Displaying a total of 230 genera (sorted alphabetically): |
Parent Level | Genus* | Taxon count | Genome count | 16S rRNA Refseq count |
Aerococcaceae | Abiotrophia | 1 | 1 | 1 |
Absconditabacteria (SR1) [F-1] | Absconditabacteria (SR1) [G-1] | 3 | 1 | 3 |
Absconditabacteria (SR1) [F-2] | Absconditabacteria (SR1) [G-2] | 0 | 0 | 0 |
Absconditabacteria (SR1) [F-3] | Absconditabacteria (SR1) [G-3] | 0 | 0 | 0 |
Alcaligenaceae | Achromobacter | 1 | 5 | 1 |
Commamonadaceae | Acidovorax | 1 | 1 | 1 |
Commamonadaceae | Acidovorax | 1 | 1 | 1 |
Commamonadaceae | Acidovorax | 1 | 1 | 1 |
Moraxellaceae | Acinetobacter | 6 | 11 | 6 |
Actinomycetaceae | Actinomyces | 30 | 37 | 45 |
Aerococcaceae | Aerococcus | 1 | 1 | 1 |
Bradyrhizobiaceae | Afipia | 2 | 1 | 2 |
Pasteurellaceae | Aggregatibacter | 9 | 42 | 12 |
Rhizobiaceae | Agrobacterium | 1 | 6 | 1 |
Carnobacteriaceae | Alloiococcus | 1 | 1 | 1 |
Prevotellaceae | Alloprevotella | 7 | 4 | 11 |
Bifidobacteriaceae | Alloscardovia | 1 | 2 | 2 |
Peptoniphilaceae | Anaerococcus | 7 | 4 | 11 |
Veillonellaceae | Anaeroglobus | 1 | 1 | 1 |
Anaerolineaceae | Anaerolinea | 0 | 0 | 0 |
Anaerolineaceae | Anaerolineae [G-1] | 1 | 3 | 1 |
Bacillaceae | Anoxybacillus | 1 | 1 | 1 |
Actinomycetaceae | Arcanobacterium | 1 | 1 | 1 |
Intrasporangiaceae | Arsenicicoccus | 1 | 1 | 2 |
Oscillatoriales | Arthrospira | 1 | 1 | 2 |
Coriobacteriaceae | Atopobium | 7 | 9 | 8 |
Bacillaceae | Bacillus | 3 | 21 | 4 |
Bacteroidaceae | Bacteroidaceae [G-1] | 1 | 1 | 1 |
Bacteroidales [F-2] | Bacteroidales [G-2] | 1 | 1 | 2 |
Bacteroidaceae | Bacteroides | 3 | 7 | 4 |
Bacteroidetes [F-1] | Bacteroidetes [G-3] | 6 | 0 | 7 |
Bacteroidetes [F-1] | Bacteroidetes [G-4] | 1 | 0 | 1 |
Bacteroidetes [F-1] | Bacteroidetes [G-5] | 3 | 0 | 3 |
Bacteroidetes [F-2] | Bacteroidetes [G-6] | 1 | 0 | 1 |
Bacteroidetes [F-1] | Bacteroidetes [G-7] | 1 | 0 | 1 |
Bartonellaceae | Bartonella | 1 | 1 | 1 |
Bdellovibrionaceae | Bdellovibrio | 1 | 0 | 1 |
Flavobacteriaceae | Bergeyella | 7 | 0 | 8 |
Bifidobacteriaceae | Bifidobacteriaceae [G-2] | 1 | 0 | 1 |
Bifidobacteriaceae | Bifidobacterium | 6 | 39 | 7 |
Alcaligenaceae | Bordetella | 1 | 2 | 1 |
Bradyrhizobiaceae | Bosea | 1 | 0 | 1 |
Bradyrhizobiaceae | Bradyrhizobium | 1 | 2 | 1 |
Brevibacteriaceae | Brevibacterium | 1 | 0 | 2 |
Caulobacteraceae | Brevundimonas | 1 | 2 | 1 |
Listeriaceae | Brochothrix | 1 | 1 | 1 |
Erysipelotrichaceae | Bulleidia | 1 | 2 | 1 |
Burkholderiaceae | Burkholderia | 1 | 2 | 1 |
Lachnospiraceae [XIV] | Butyrivibrio | 3 | 0 | 3 |
Caldilineaceae | Caldilinea | 0 | 0 | 0 |
Campylobacteraceae | Campylobacter | 8 | 18 | 10 |
Saccharibacteria (TM7) [F-1] | Candidatus Saccharimonas | 0 | 0 | 0 |
Flavobacteriaceae | Capnocytophaga | 22 | 20 | 33 |
Cardiobacteriaceae | Cardiobacterium | 2 | 2 | 3 |
Lachnospiraceae [XIV] | Catonella | 3 | 1 | 4 |
Caulobacteraceae | Caulobacter | 1 | 0 | 1 |
Selenomonadaceae | Centipeda | 1 | 1 | 1 |
Chlamydiaceae | Chlamydophila | 1 | 5 | 1 |
Chlorobiaceae | Chlorobium | 0 | 0 | 0 |
Clostridiales [F-1] | Clostridiales [F-1][G-1] | 1 | 0 | 1 |
Clostridiales [F-1] | Clostridiales [F-1][G-2] | 1 | 0 | 1 |
Clostridiales [F-3] | Clostridiales [F-3][G-1] | 1 | 1 | 1 |
Comamonadaceae | Comamonas | 1 | 4 | 1 |
Corynebacteriaceae | Corynebacterium | 27 | 128 | 35 |
Enterobacteriaceae | Cronobacter | 1 | 5 | 1 |
Eggerthellaceae | Cryptobacterium | 1 | 1 | 1 |
Burkholderiaceae | Cupriavidus | 1 | 1 | 1 |
Propionibacteriaceae | Cutibacterium | 4 | 18 | 5 |
Phyllobacteriaceae | Defluvibacter | 1 | 0 | 1 |
Comamonadaceae | Delftia | 1 | 4 | 2 |
Dermabacteraceae | Dermabacter | 1 | 2 | 1 |
Desulfobulbaceae | Desulfobulbus | 1 | 2 | 1 |
Desulfomicrobiaceae | Desulfomicrobium | 1 | 1 | 1 |
Desulfovibrionaceae | Desulfovibrio | 2 | 1 | 2 |
Veillonellaceae | Dialister | 4 | 3 | 5 |
Dietziaceae | Dietzia | 1 | 2 | 1 |
Carnobacteriaceae | Dolosigranulum | 1 | 1 | 1 |
Eggerthellaceae | Eggerthella | 1 | 1 | 1 |
Erysipelotrichaceae | Eggerthia | 1 | 2 | 1 |
Neisseriaceae | Eikenella | 2 | 2 | 3 |
Rhodospirillales [F-1] | Enhydrobacter | 1 | 1 | 1 |
Enterobacteriaceae | Enterobacter | 2 | 3 | 2 |
Enterococcaceae | Enterococcus | 5 | 17 | 5 |
Erysipelotrichaceae | Erysipelothrix | 1 | 1 | 1 |
Erysipelotrichaceae | Erysipelotrichaceae [G-1] | 2 | 0 | 2 |
Erythrobacteraceae | Erythromicrobium | 1 | 0 | 1 |
Enterobacteriaceae | Escherichia | 1 | 52 | 1 |
Eubacteriaceae [XV] | Eubacterium | 1 | 1 | 1 |
Ruminococcaceae | Fastidiosipila | 1 | 1 | 1 |
Peptostreptococcaceae [XI] | Filifactor | 1 | 1 | 1 |
Peptoniphilaceae | Finegoldia | 1 | 6 | 2 |
Chitinophagaceae | Flavitalea | 1 | 0 | 1 |
Synergistaceae | Fretibacterium | 6 | 1 | 11 |
Fusobacteriaceae | Fusobacterium | 14 | 44 | 21 |
Bifidobacteriaceae | Gardnerella | 1 | 8 | 1 |
Gemellaceae | Gemella | 5 | 6 | 6 |
| Gemmiger | | | |
Gracilibacteria (GN02) [F-1] | Gracilibacteria (GN02) [G-1] | 2 | 0 | 2 |
Gracilibacteria (GN02) [F-2] | Gracilibacteria (GN02) [G-2] | 1 | 0 | 1 |
Gracilibacteria (GN02) [F-1] | Gracilibacteria (GN02) [G-3] | 0 | 0 | 0 |
Gracilibacteria (GN02) [F-1] | Gracilibacteria (GN02) [G-4] | 0 | 0 | 0 |
Carnobacteriaceae | Granulicatella | 2 | 2 | 4 |
Rhodobacteraceae | Haematobacter | 1 | 1 | 1 |
Pasteurellaceae | Haemophilus | 12 | 52 | 21 |
Helicobacteraceae | Helicobacter | 1 | 12 | 1 |
Ignavibacteriaceae | Ignavibacterium | 0 | 0 | 0 |
Intrasporangiaceae | Janibacter | 1 | 1 | 1 |
Staphylococcaceae | Jeotgalicoccus | 1 | 0 | 1 |
Lachnospiraceae [XIV] | Johnsonella | 2 | 1 | 2 |
Dethiosulfovibrionaceae | Jonquetella | 1 | 3 | 1 |
Neisseriaceae | Kingella | 6 | 4 | 9 |
Enterobacteriaceae | Klebsiella | 2 | 7 | 4 |
Enterobacteriaceae | Kluyvera | 1 | 1 | 2 |
Micrococcaceae | Kocuria | 3 | 2 | 3 |
Dermacoccaceae | Kytococcus | 1 | 1 | 1 |
Lachnospiraceae [XIV] | Lachnoanaerobaculum | 6 | 5 | 9 |
Lachnospiraceae [XIV] | Lachnospiraceae [G-10] | 1 | 0 | 1 |
Lachnospiraceae [XIV] | Lachnospiraceae [G-2] | 2 | 1 | 2 |
Lachnospiraceae [XIV] | Lachnospiraceae [G-3] | 1 | 0 | 1 |
Lachnospiraceae [XIV] | Lachnospiraceae [G-7] | 2 | 0 | 2 |
Lachnospiraceae [XIV] | Lachnospiraceae [G-8] | 1 | 1 | 2 |
Lachnospiraceae [XIV] | Lachnospiraceae [G-9] | 1 | 0 | 1 |
Lactobacillaceae | Lactobacillus | 26 | 119 | 27 |
Streptococcaceae | Lactococcus | 1 | 13 | 2 |
Burkholderiaceae | Lautropia | 1 | 1 | 2 |
Corynebacteriales [F-1] | Lawsonella | 1 | 1 | 2 |
Comamonadaceae | Leptothrix | 2 | 0 | 2 |
Leptotrichiaceae | Leptotrichia | 21 | 15 | 23 |
Leptotrichiaceae | Leptotrichiaceae [G-1] | 0 | 0 | 0 |
Listeriaceae | Listeria | 1 | 23 | 1 |
Bacillaceae | Lysinibacillus | 1 | 2 | 1 |
Veillonellaceae | Megasphaera | 3 | 1 | 5 |
Melioribacteraceae | Melioribacter | 0 | 0 | 0 |
Rhizobiaceae | Mesorhizobium | 1 | 3 | 1 |
Methanobacteriaceae | Methanobrevibacter | 1 | 3 | 3 |
Alphaproteobacteria [F-1] | Micavibrio | 1 | 1 | 1 |
Microbacteriaceae | Microbacterium | 2 | 2 | 2 |
Micrococcaceae | Micrococcus | 1 | 1 | 1 |
Selenomonadaceae | Mitsuokella | 3 | 2 | 5 |
Actinomycetaceae | Mobiluncus | 1 | 4 | 1 |
Peptostreptococcaceae [XI] | Mogibacterium | 5 | 3 | 5 |
Mollicutes [F-1] | Mollicutes [G-1] | 1 | 0 | 1 |
Mollicutes [F-2] | Mollicutes [G-2] | 1 | 0 | 1 |
Moraxellaceae | Moraxella | 5 | 16 | 9 |
Mycobacteriaceae | Mycobacterium | 3 | 11 | 3 |
Mycoplasmataceae | Mycoplasma | 9 | 17 | 9 |
| Negativicoccus | | | |
Neisseriaceae | Neisseria | 20 | 36 | 24 |
Neisseriaceae | Neisseriaceae [G-1] | 1 | 0 | 1 |
Neisseriaceae | Neisseriaceae [G-1] | 1 | 0 | 1 |
Sphingomonadaceae | Novosphingobium | 1 | 1 | 1 |
Brucellaceae | Ochrobactrum | 1 | 2 | 1 |
Atopobiaceae | Olsenella | 5 | 5 | 5 |
Lachnospiraceae [XIV] | Oribacterium | 5 | 5 | 11 |
Comamonadaceae | Ottowia | 1 | 1 | 2 |
Paenibacillaceae | Paenibacillus | 3 | 3 | 3 |
Rhodobacteraceae | Paracoccus | 1 | 1 | 1 |
Bifidobacteriaceae | Parascardovia | 1 | 3 | 1 |
Peptoniphilaceae | Parvimonas | 3 | 3 | 6 |
Sphingobacteriaceae | Pedobacter | 3 | 0 | 3 |
Actinomycetaceae | Peptidiphaga | 2 | 2 | 3 |
Peptococcaceae | Peptococcus | 2 | 0 | 3 |
Peptoniphilaceae | Peptoniphilaceae [G-1] | 1 | 1 | 2 |
Peptoniphilaceae | Peptoniphilaceae [G-2] | 1 | 0 | 1 |
Peptoniphilaceae | Peptoniphilaceae [G-3] | 1 | 1 | 1 |
Peptoniphilaceae | Peptoniphilus | 7 | 10 | 8 |
Peptostreptococcaceae [XI] | Peptostreptococcaceae [XI][G-1] | 3 | 3 | 3 |
Peptostreptococcaceae [XI] | Peptostreptococcaceae [XI][G-2] | 1 | 0 | 1 |
Peptostreptococcaceae [XI] | Peptostreptococcaceae [XI][G-3] | 2 | 0 | 2 |
Peptostreptococcaceae [XI] | Peptostreptococcaceae [XI][G-4] | 2 | 0 | 2 |
Peptostreptococcaceae [XI] | Peptostreptococcaceae [XI][G-5] | 2 | 1 | 2 |
Peptostreptococcaceae [XI] | Peptostreptococcaceae [XI][G-6] | 2 | 2 | 2 |
Peptostreptococcaceae [XI] | Peptostreptococcaceae [XI][G-7] | 4 | 1 | 6 |
Peptostreptococcaceae [XI] | Peptostreptococcaceae [XI][G-8] | 1 | 0 | 1 |
Peptostreptococcaceae [XI] | Peptostreptococcaceae [XI][G-9] | 1 | 1 | 1 |
Peptostreptococcaceae [XI] | Peptostreptococcus | 2 | 4 | 3 |
Sphingomonadaceae | Porphyrobacter | 1 | 1 | 1 |
Porphyromonadaceae | Porphyromonas | 12 | 28 | 22 |
Prevotellaceae | Prevotella | 51 | 73 | 75 |
Propionibacteriaceae | Propionibacteriaceae [G-1] | 1 | 0 | 1 |
Propionibacteriaceae | Propionibacteriaceae [G-2] | 1 | 1 | 1 |
Propionibacteriaceae | Propionibacterium | 1 | 2 | 2 |
Enterobacteriaceae | Proteus | 1 | 5 | 1 |
Pseudomonadaceae | Pseudomonas | 7 | 30 | 7 |
Propionibacteriaceae | Pseudopropionibacterium | 2 | 2 | 2 |
Eubacteriaceae [XV] | Pseudoramibacter | 1 | 1 | 1 |
Dethiosulfovibrionaceae | Pyramidobacter | 1 | 4 | 3 |
Burkholderiaceae | Ralstonia | 2 | 4 | 2 |
Rhodobacteraceae | Rhodobacter | 1 | 7 | 1 |
Rhodocyclaceae | Rhodocyclus | 1 | 0 | 1 |
Acetobacteraceae | Roseomonas | 1 | 1 | 1 |
Acetobacteraceae | Roseomonas | 1 | 1 | 1 |
Micrococcaceae | Rothia | 3 | 7 | 4 |
Ruminococcaceae | Ruminococcaceae [G-1] | 1 | 0 | 1 |
Ruminococcaceae | Ruminococcaceae [G-2] | 1 | 0 | 1 |
Ruminococcaceae | Ruminococcaceae [G-3] | 2 | 0 | 2 |
Saccharibacteria (TM7) [F-1] | Saccharibacteria (TM7) [G-1] | 9 | 6 | 9 |
Saccharibacteria (TM7) [F-1] | Saccharibacteria (TM7) [G-2] | 1 | 0 | 1 |
Saccharibacteria (TM7) [F-1] | Saccharibacteria (TM7) [G-3] | 1 | 0 | 1 |
Saccharibacteria (TM7) [F-1] | Saccharibacteria (TM7) [G-4] | 1 | 0 | 1 |
Saccharibacteria (TM7) [F-2] | Saccharibacteria (TM7) [G-5] | 1 | 0 | 2 |
Saccharibacteria (TM7) [F-1] | Saccharibacteria (TM7) [G-6] | 1 | 0 | 1 |
Saccharibacteria (TM7) [F-1] | Saccharibacteria (TM7) [G-7] | 1 | 0 | 1 |
Saccharibacteria (TM7) [F-1] | Saccharibacteria (TM7) [G-8] | 1 | 1 | 1 |
Sanguibacteraceae | Sanguibacter | 1 | 1 | 1 |
Bifidobacteriaceae | Scardovia | 2 | 2 | 3 |
Comamonadaceae | Schlegelella | 2 | 0 | 2 |
Chitinophagaceae | Segetibacter | 1 | 0 | 2 |
Selenomonadaceae | Selenomonas | 25 | 16 | 39 |
Yersiniaceae | Serratia | 1 | 1 | 1 |
Lachnospiraceae [XIV] | Shuttleworthia | 1 | 1 | 1 |
Neisseriaceae | Simonsiella | 1 | 1 | 1 |
Coriobacteriaceae | Slackia | 1 | 1 | 2 |
Leptotrichiaceae | Sneathia | 2 | 2 | 2 |
Erysipelotrichaceae | Solobacterium | 1 | 3 | 1 |
Sphingomonadaceae | Sphingomonas | 3 | 1 | 3 |
Staphylococcaceae | Staphylococcus | 13 | 66 | 14 |
Xanthomonadaceae | Stenotrophomonas | 2 | 8 | 2 |
Lachnospiraceae [XIV] | Stomatobaculum | 4 | 1 | 4 |
Streptococcaceae | Streptococcus | 37 | 187 | 49 |
Syntrophomonadaceae [VIII] | Syntrophomonadaceae [VIII][G-1] | 1 | 0 | 1 |
Porphyromonadaceae | Tannerella | 4 | 13 | 4 |
Pasteurellaceae | Terrahaemophilus | 0 | 0 | 0 |
Spirochaetaceae | Treponema | 50 | 35 | 64 |
Corynebacteriaceae | Turicella | 1 | 1 | 1 |
Comamonadaceae | Variovorax | 1 | 3 | 1 |
Veillonellaceae | Veillonella | 7 | 13 | 16 |
Veillonellaceae | Veillonellaceae [G-1] | 9 | 0 | 12 |
WPS-2 [F-1] | WPS-2 [G-1] | 0 | 0 | 0 |
Enterobacteriaceae | Yersinia | 1 | 25 | 1 |