"gene_id","gene_start","gene_stop","gene_length","gene_nuc_seq","pI","net_charge","mol_wt","gene_prot_seq","defline","comment","definition","cellular_location","blast_summary","interpro_summary","cogs_summary","blocks_summary","ProDom","gene_id_lmd","gene_start_lmd","gene_stop_lmd","gene_length_lmd","gene_nuc_seq_lmd","pI_lmd","net_charge_lmd","mol_wt_lmd","gene_prot_seq_lmd","defline_lmd","comment_lmd","definition_lmd","blast_summary_lmd","cogs_summary_lmd","blocks_summary_lmd","ProDom_lmd","revisit","revisit_lmd","paralog","paralog_lmd","pdb_hit_lmd","pdb_hit","bgene_id","bgene_id_lmd","pfam_summary","pfam_summary_lmd","gi","gi_lmd","case1","case2","case1_lmd","case2_lmd","mol_id","mol_id_lmd","island_id","genbank_locus_tag" "PG0001","1","1419","1419","ATGAACTACCACTCGACCAATGTAAATGAAATATGGGACGCGTGTCTTCGCATCCTTCAGGATATTGTGGATGAGCGAGCATACCGTACATGGTTCTTGCCTATCATACCGGTATCTATCGAGGGCGATACGCTTACCTTACAAGTGCCGAGTCAGTTCTTCTGTGAGTTTTTGGAGGGCAATTTCGTAGAGCAGCTGCGTACGGTGTTGGGGCGTGTTATAGGTCCCAACGCATCATTACAGTATAATGCCCTTGTAGACAACAGTTCGCCCAAATATCCCGGCACGGTGACATTGGCCGGTTGTGCCGACGGTGGACAGGCAGCCGAACAGTTCGATGTCAATTTGCTACACAGGCACATGCCCAATGCAGCCACCCATAGCGAAGCACAGGATTTCGACACGCAGCTCAATAGCAGGCTCAATTTCCGCAACTTCTACCAGAGCGAATGCAACTATGTAGCTCGCTCAGTGGCTGAAGCCATCGCCGCCAGCCCGGGCAATACGCCGATGAATCCATTCTTTATATATGGAGCTTCCGGTGTGGGCAAGACGCACTTGTGCCATGCCTTGGGCCTTCGTGTCAGAGAGATGCACCCCCGGTTGAAAGTACTATACGTATCGAGTCATTTGTTCGAGATGCAGTTCACTACGGCAGCCCGTATGGGGACGATCAATGACTTCATCGCATTCTACCAGCAAGTGGATGTACTGATCATCGATGACATCCAATGGTTGATCGGCAAGAAGAAAACGCAATTAGCTTTCTTCCAAGTGTTCAATCACCTCTATATGCTTGGCAAACAGATAGTCTTGACGTCGGACAAACCTCCTGTAGACCTTAACGGGATGGAGGAGCGGTTGGTCACTCGTATGGCCGGTGCTACCTGTGTCAAGATAGAACGTCCGGATTTGAAGTTGCGTCGTGAGATACTCCAGCAGCGTACGCTTCAAAGCGGTGTCCGGCTGGACGAATCGGTGCTGAACTTTATCGCCGAAAATGTCTGCGACAATGTTCGTGAACTGGAAGGCACCCTCGTATCCTTGATCACAAATTCGGTGGTTGTAGGTAAGGAAATCGACCTGACCTTTGCCAAACGGATTGTCCGCCAAGCTGTCAGACTGGAGAAAAAGGAAGTCACCATCGAGTGCATCCAGCAGGCAGTCAGCAGAGTATTTCAGGTGCAGATAGAGCAGATGAAAAGCAAGAGTCGGAAGCAGGATATCGTACAGGCTCGTCAGGTGGTCATGTTCCTCTCCAAAAAACACACGGCTCAGTCCTTGTCGGCTATCGGCGAACTGATGGGAGGACGTAACCATGCCACCGTACTCCACGGCTGTCGCTGTGTGACGAACGAGATGGAGATGAATGCCTCATTCCGTTCATCGGTAGAACGTGCCGAACAGTTGATCGCCAAT","7.40","2.44","53352","MNYHSTNVNEIWDACLRILQDIVDERAYRTWFLPIIPVSIEGDTLTLQVPSQFFCEFLEGNFVEQLRTVLGRVIGPNASLQYNALVDNSSPKYPGTVTLAGCADGGQAAEQFDVNLLHRHMPNAATHSEAQDFDTQLNSRLNFRNFYQSECNYVARSVAEAIAASPGNTPMNPFFIYGASGVGKTHLCHALGLRVREMHPRLKVLYVSSHLFEMQFTTAARMGTINDFIAFYQQVDVLIIDDIQWLIGKKKTQLAFFQVFNHLYMLGKQIVLTSDKPPVDLNGMEERLVTRMAGATCVKIERPDLKLRREILQQRTLQSGVRLDESVLNFIAENVCDNVRELEGTLVSLITNSVVVGKEIDLTFAKRIVRQAVRLEKKEVTIECIQQAVSRVFQVQIEQMKSKSRKQDIVQARQVVMFLSKKHTAQSLSAIGELMGGRNHATVLHGCRCVTNEMEMNASFRSSVERAEQLIAN","1 1419","Predicted dnaK protein is PG1069. For polIII sequences, see PG1615, PG0031, PG0831, PG1245, PG1614.TIGR ID: PG0001","chromosomal replication initiator protein DNAA","Cytoplasm","Numerous hits to chromosomal replication proteins; e.g. residues11-448 are 33% similar to dnaA protein (IQECDA) of E. coli; residues 7-461 are 32% similar to chromosomal replication protein (dnaA) (U32780) of Haemophilus influenzae, residues 10-461 are 31% similar to dnaA protein (X14791)of Pseudomonas putida.This sequence is orthologous to CT250, CT275 and to BT2143.","
InterPro
IPR001957
Family
Bacterial chromosomal replication initiator protein, DnaA
PR00051\"[171-191]T\"[203-217]T\"[235-249]T\"[269-296]T\"[431-450]TDNAA
TIGR00362\"[5-471]TDnaA
PS01008\"[431-450]TDNAA
InterPro
IPR003593
Domain
AAA+ ATPase, core
SM00382\"[170-374]TAAA
InterPro
IPR010921
Domain
Trp repressor/replication initiator
SSF48295\"[367-473]TTrp_repress_rep
InterPro
IPR013159
Domain
Chromosomal replication initiator, DnaA C-terminal
PF08299\"[381-450]TBac_DnaA_C
SM00760\"[381-450]TBac_DnaA_C
InterPro
IPR013317
Domain
Chromosomal replication initiator, DnaA
PF00308\"[137-356]TBac_DnaA
noIPR
unintegrated
unintegrated
G3DSA:1.10.1750.10\"[368-471]TG3DSA:1.10.1750.10
G3DSA:3.40.50.300\"[134-302]TG3DSA:3.40.50.300
SSF52540\"[135-350]TSSF52540


","BeTs to 12 clades of COG0593COG name: ATPase involved in DNA replication initiationFunctional Class: LThe phylogenetic pattern of COG0593 is -----qvcEbrHujgpolINXNumber of proteins in this genome belonging to this COG is 1","***** IPB001957 (Bacterial chromosomal replication initiator protein, DnaA) with a combined E-value of 3.6e-54. IPB001957A 171-188 IPB001957B 228-274 IPB001957C 323-349 IPB001957D 399-450","Residues 281-448 are 37% similar to a (REPLICATION PROTEIN INITIATOR CHROMOSOMAL) protein domain (PD002151) which is seen in DNAA_PSEPU.Residues 143-278 are 42% similar to a (PROTEIN ATP-BINDING REPLICATION INITIATOR) protein domain (PD002717) which is seen in DNAA_HAEIN.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Fri Dec 7 14:39:56 2001","Mon Sep 15 10:26:10 2003","Wed Dec 10 16:42:21 2003","Fri Dec 7 14:39:56 2001","Wed Mar 28 09:13:17 2001","Wed Mar 28 09:13:17 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Wed Mar 8 10:20:26 MST 2000","Wed Mar 28 09:13:17 2001","-54% similar to PDB:1L8Q CRYSTAL STRUCTURE OF DNA REPLICATION INITIATION FACTOR (E_value = 1.3E_44);-54% similar to PDB:2HCB Structure of AMPPCP-bound DnaA from Aquifex aeolicus (E_value = 1.3E_44);-67% similar to PDB:1J1V Crystal structure of DnaA domainIV complexed with DnaAbox DNA (E_value = 9.1E_11);-51% similar to PDB:1BBT METHODS USED IN THE STRUCTURE DETERMINATION OF FOOT AND MOUTH DISEASE VIRUS (E_value = 9.1E_11);-51% similar to PDB:1FOD STRUCTURE OF A MAJOR IMMUNOGENIC SITE ON FOOT-AND-MOUTH DISEASE VIRUS (E_value = 9.1E_11);","","","Residues 137 to 450 (E-value = 7.3e-105) place PG0001 in the Bac_DnaA family which is described as Bacterial dnaA protein (PF00308)","Wed Mar 28 09:13:17 2001","34539881","","","Ohmori,H., Kimura,M., Nagata,T. and Sakakibara,Y.Structural analysis of the dnaA and dnaN genes of Escherichia coliGene 28 (2), 159-170 (1984)PubMed: 6234204","","Fri Dec 7 14:39:56 2001","1","","","PG0001" "PG0002","1435","2004","570","ATGATCCATCCCACAGCGATAGTAGAAGACGGTTGTGTGCTTGGTCAGGGTACACGCGTATGGCACTTCTCTCACTTGATGTGCGGAGCCGAGGTCGGAGAGAATTGCAACATCGGGCAGAATGTCGTTATAATGCCGGAGGTACGACTGGGGCGAGGCTGTAAGGTGCAGAACAACGTTTCTCTGTATAGTGGTGTCATATGCGAAGATTACGTATTCCTCGGACCGAGTTGTGTATTTACCAACGTGATCAATCCTCGCGCCTTTATTGAAAGAAAATCCGAATACCGCCCCACTCATTTGCACGAAGGCGTCTCCATCGGAGCCAATGCCACTATTCTTTGTGGTATTACGATAGGGGCTTATGCCATGGTAGGTGCAGGAACCGTGGTGATTAGGGATGTACCGCCCTATGCCTTGGTAGTGGGCAATCCTGCTCGCCGGATCGGTTGGGTAAGCCGCGCCGGTCACCGCTTGTCGTTCGATGACAAGGGGATGGCCGTCTGTCCTGAAACGGGCGAACGATATAGAGAGGTCGAAGAAACGGGTACAATAGAACCGGTATCGGAC","6.20","-2.94","20574","MIHPTAIVEDGCVLGQGTRVWHFSHLMCGAEVGENCNIGQNVVIMPEVRLGRGCKVQNNVSLYSGVICEDYVFLGPSCVFTNVINPRAFIERKSEYRPTHLHEGVSIGANATILCGITIGAYAMVGAGTVVIRDVPPYALVVGNPARRIGWVSRAGHRLSFDDKGMAVCPETGERYREVEETGTIEPVSD","1435 2004","Serine-O-acetyltransferases are associated with EC 2.3.1.30.TIGR ID: PG0002","acetyltransferase/hexapeptide transferase","Cytoplasm","Numerous hits to acetyl transferases and serine-O-transferases; e.g. residues 2-165 are 57% similar to an acetyltransferase (AJ248286) of Pyrococcus abyssi, residues 3-155 are 54% similar to WbpD (U50396) of Pseudomonas aeruginosa, residues 2-149 are 33% similar to 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase-related protein (AE001799) of Thermotoga maritima.","
InterPro
IPR001451
Repeat
Bacterial transferase hexapeptide repeat
PF00132\"[5-22]T\"[29-46]T\"[47-64]T\"[65-82]T\"[98-115]T\"[116-133]THexapep
PS00101\"[107-135]THEXAPEP_TRANSFERASES
InterPro
IPR011004
Domain
Trimeric LpxA-like
SSF51161\"[1-185]TTrimer_LpxA_like
noIPR
unintegrated
unintegrated
G3DSA:2.160.10.10\"[2-150]TG3DSA:2.160.10.10
PTHR23416\"[111-149]TPTHR23416
PTHR23416:SF2\"[111-149]TPTHR23416:SF2


","BeTs to 4 clades of COG0110COG name: Acetyltransferases (the isoleucine patch superfamily)Functional Class: RThe phylogenetic pattern of COG0110 is -Mt-y-vCEBR-------in-Number of proteins in this genome belonging to this COG is 1","***** IPB001451 (Bacterial transferase hexapeptide repeat) with a combined E-value of 2.3e-10. IPB001451A 32-51 IPB001451B 125-135 IPB001451A 26-45 IPB001451A 2-21 IPB001451A 113-132 IPB001451A 107-126 IPB001451B 32-42 IPB001451B 50-60","Residues 2-56 are 49% similar to a (ACYLTRANSFERASE TRANSFERASE) protein domain (PD004893) which is seen in LPXA_BRUAB.Residues 25-149 are 60% similar to a (TRANSFERASE ACYLTRANSFERASE PROTEIN REPEAT BIOSYNTHESIS) protein domain (PD000343) which is seen in Q45377_BBBBB.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Fri Jun 15 11:27:37 MDT 2001","Fri Jun 15 11:27:37 MDT 2001","Tue Nov 28 14:27:25 MST 2000","Mon May 21 16:15:51 MDT 2001","Mon May 21 16:15:51 MDT 2001","Mon May 21 16:15:51 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Wed Mar 8 10:20:53 MST 2000","Mon May 21 16:15:51 MDT 2001","-50% similar to PDB:2IC7 Crystal Structure of Maltose Transacetylase from Geobacillus kaustophilus (E_value = 1.3E_10);","","","No significant hits to the Pfam 11.0 database","Mon May 21 16:15:51 MDT 2001","34539882","","","","","","1","","","PG0002" "PG0003","3028","2012","1017","ATGACTACCAAGGGGAGGAATACCACCGTCGATGTCCTGCGAGTTCTGGCAGGATTGATGGTAATCGGCATCCATACTTCGGGAGAATACGTTCTCGAAGGAGTGGCTGAGGGTGCAAACTTTATAGCCGGTCTATGCTGGGAGGCGGTCGTGCAGCCGGCCGTTCCTATATTCGTCATTATCAGCGGGGCTTTTGTCTTGGGACGCAATGAGACGTGGGGAGATTTCTATCGGAAACGAATACCGCGACTGCTGGTACTACTCGCTTTTTGGCTTCCGTTCTATTGGCTGTGGCTGTGGCTCAAGGGCGATGATATAGGTTCCTATCTTGCCGGCTTTTGGCAGGGACGCTCATTCGTTCATCTGTGGTATGTGGTGATGCTGCTGGGACTTTATGCAGTCGTTCCTCTGCTCAACGAAATAATTCGCAGGTGCGAAGCCGATGGAGAGAAGGCTGCTCGTAAACGACTTTGGACTCTCTCTACCATATTGCTACTGCTGGGGATATTGTCCAACACCTACGATTACATACTCGGTTACAACCGCTTTTTCCCTTTTCTTTGGCCGGATTATTTGGGATATTTCCTTGTGGGTTATACCCTGAAGAGCCATGCTCCGCAGCGTTCTTTACCGGCTCTTTCCTTGTACGGACTCTCTACGATTTCTCTTTTCTTCGCAAGTCGGTACGCTTTCGAGCACGGCGAAGGGCTATACTTCTACCGTAATCTCTCTCCTTTGATTGTTCTTTCTGCTATCAGTCTCTTCGCGTTCTTCGTTTCTTGGGGAGGATGTGGAGGAAAATTGGCGCGGATCGGGAAAATGCAGGGGGATATTTTAGGAATCTACTTAGTACACATCGCTGTGCTGAACGTGGTGACAAAAATACTTGTACTGACCACCCCCAGCCTGATGCAATGCGCATGGCTCAACATACCGATCCGTGTAGGATTGGTTTTCTTCGTTTCTTGGGGAGTTGTGCGGCTGATGAAGCGGTTGCCGATATGCCGCTATTTGGTC","10.30","12.96","38374","MTTKGRNTTVDVLRVLAGLMVIGIHTSGEYVLEGVAEGANFIAGLCWEAVVQPAVPIFVIISGAFVLGRNETWGDFYRKRIPRLLVLLAFWLPFYWLWLWLKGDDIGSYLAGFWQGRSFVHLWYVVMLLGLYAVVPLLNEIIRRCEADGEKAARKRLWTLSTILLLLGILSNTYDYILGYNRFFPFLWPDYLGYFLVGYTLKSHAPQRSLPALSLYGLSTISLFFASRYAFEHGEGLYFYRNLSPLIVLSAISLFAFFVSWGGCGGKLARIGKMQGDILGIYLVHIAVLNVVTKILVLTTPSLMQCAWLNIPIRVGLVFFVSWGVVRLMKRLPICRYLV","3187 2012 [Bad Olap 4 146 0]","TIGR ID: PG0003","probable transmembrane protein","Inner membrane, Cytoplasm","Two very weak hits using gapped BLAST. One hit to transmembrane protein. Residues 3-296 are 21% similar to transmembrane protein (AJ006986) of Streptococcus pneumoniae. One hit to unknown protein. Residues 6-141 are 29% similar to AE006301 of Lactococcus lactis.","
InterPro
IPR002656
Domain
Acyltransferase 3
PF01757\"[7-336]TAcyl_transf_3


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Tue Jun 12 13:26:30 MDT 2001","","Tue Jun 12 13:26:30 MDT 2001","Tue Jun 12 13:26:30 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Tue Jun 12 13:26:30 MDT 2001","Tue Jun 12 13:26:30 MDT 2001","","","Tue Nov 28 15:20:15 MST 2000","Tue Jun 12 13:48:48 MDT 2001","Tue Nov 28 15:20:15 MST 2000","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Wed Mar 8 10:21:52 MST 2000","Mon May 21 16:17:20 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 7 to 336 (E-value = 6.9e-06) place PG0003 in the Acyl_transf_3 family which is described as Acyltransferase family (PF01757)","Mon May 21 16:17:20 MDT 2001","34539883","","","","","","1","","","PG0003" "PG0004","3108","3809","702","ATGAATAAGAAAAGACTCGTCGTCTTGAGTGGCGCAGGCATGAGTGCCGAAAGCGGCATATCGACTTTTCGTGATGCCAACGGATTGTGGGAGAATTATCCCGTCGAGGATGTGGCCTCTATCGATGGGTTTAGGCGCAATCCTGCCCTCGTTCTCAAGTTCTACAATGCACGCCGACGCGACTATGCCGGTTGCAAACCGAATGCAGGCCATATTGGTTTGGCGGAAATGGAGAAGGAGTATGATGTAAGAATCATCACGCAGAATGTGGATGATCTGCACGAGAGAGCAGGCAGCACACACGTCATTCATCTGCACGGAGAGTTGATGAAGAACAGATCTGTGGCCACAGACAGTGTGCTCTATCCCGTAGACCCGACCAATCCCGATCTGCATGTAGGAGATCTGGCACCCGACGGCTGTCAGCTACGGCCGTTTATTGTGTGGTTTGGAGAAGCTGTTCCGATGATAGAGCCGGCCATCGAAGAGGTAACACAGGCAGACATTCTCGTTGTCATCGGCACCTCTCTCAACGTTTATCCGGCTGCCGGACTGTTGAATTATGCTCCTCGCAACTGCCCCATCTATCTGATCGATCCAAAGCCTGTGCGCAGCACCTCCCGGCAAGACATTCGGTATATCCATGCTCCTGCCACGGAAGGCGTAAGGATGTTGCGGCAAGAACTCCGTGATATAGATCGC","6.20","-3.45","26088","MNKKRLVVLSGAGMSAESGISTFRDANGLWENYPVEDVASIDGFRRNPALVLKFYNARRRDYAGCKPNAGHIGLAEMEKEYDVRIITQNVDDLHERAGSTHVIHLHGELMKNRSVATDSVLYPVDPTNPDLHVGDLAPDGCQLRPFIVWFGEAVPMIEPAIEEVTQADILVVIGTSLNVYPAAGLLNYAPRNCPIYLIDPKPVRSTSRQDIRYIHAPATEGVRMLRQELRDIDR","3042 3809 [Shorter 3 146 99]","TIGR ID: PG0004","probable phosphoribosyltransferase transcriptional regulator","Cytoplasm","Numerous hits to transcriptional regulatory proteins and hypothetical proteins; e.g. residues 4-185 are 45% similar to transcriptional regulatory protein Sir2 family (AE000987) of Archaeoglobus fulgidus, residues 2-183 are 39% similar to transcriptional regulatory protein Sir2 (AJ248286) of Pyrococcus abyssi, residues 4-229 are 51% similar to putative protein (AE001545) of Helicobacter pylori J99.Residues 4-189 are 46% similar to a probable nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) of Vibrio cholerae (AE004229). See also U89687 od Salmonella.","
InterPro
IPR003000
Family
Silent information regulator protein Sir2
PTHR11085\"[11-229]TSIR2
PF02146\"[11-181]TSIR2
PS50305\"[1-234]TSIRTUIN
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.1220\"[1-229]TG3DSA:3.40.50.1220
SSF52467\"[3-229]TSSF52467


","BeTs to 9 clades of COG0846COG name: Putative NaMN:DMB phosphoribosyltransferase (CobB)/SIR2 transcriptional regulatorFunctional Class: HThe phylogenetic pattern of COG0846 is A--kYqv-ebr-uj-------Number of proteins in this genome belonging to this COG is 1","***** BP02659 (PROTEIN SIR2 TRANSCRIPTION R) with a combined E-value of 6.6e-15. BP02659A 5-21 BP02659C 67-116 BP02659D 141-158 BP02659E 169-203","Residues 33-202 are 56% similar to a (PROTEIN SIR2 TRANSCRIPTION REGULATION REPRESSOR) protein domain (PD002659) which is seen in Q9ZAB8_BBBBB.","","Tue Jun 12 13:34:21 MDT 2001","","Tue Jun 12 13:34:21 MDT 2001","Tue Jun 12 13:34:21 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Tue Jun 12 13:34:21 MDT 2001","Tue Jun 12 13:34:21 MDT 2001","","","Wed Jun 6 15:44:53 MDT 2001","Tue Jun 12 13:43:10 MDT 2001","Mon Feb 5 13:40:29 MST 2001","Mon May 21 16:22:43 MDT 2001","Mon May 21 16:22:43 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Wed Mar 8 10:26:34 MST 2000","Mon May 21 16:22:43 MDT 2001","-66% similar to PDB:1S5P Structure and substrate binding properties of cobB, a Sir2 homolog protein deacetylase from Eschericia coli. (E_value = 1.5E_41);-61% similar to PDB:1ICI CRYSTAL STRUCTURE OF A SIR2 HOMOLOG-NAD COMPLEX (E_value = 3.0E_34);-61% similar to PDB:1M2G Sir2 homologue-ADP ribose complex (E_value = 3.0E_34);-61% similar to PDB:1M2H Sir2 homologue S24A mutant-ADP ribose complex (E_value = 6.7E_34);-61% similar to PDB:1M2J Sir2 homologue H80N mutant-ADP ribose complex (E_value = 1.9E_33);","","","Residues 11 to 181 (E-value = 1.5e-58) place PG0004 in the SIR2 family which is described as Sir2 family (PF02146)","Mon May 21 16:22:43 MDT 2001","34539884","","","","","","1","","","PG0004" "PG0005","5041","3890","1152","ATGAAAGTATTTCTCGAAGCCTTTCTCCTACAATATCTCCTGACCCTCTACATCGCATACCGAGGAGGACAGGCCCTACCGCAAAAGAGCCTTTGGCGCAAAGGTTTTCACCTTCTGATGGGTGTAGTATTCACCCTGTATCTAATAGGGTTTGCCGGCAACAGGGTTTTGCCCGATGCCGTGATGAGCTGCATTATGTCTGTCACAGGCTTCTGGTTTGTCATGTCCATTTATGCCATGTTTGCCATGGTGATCGTAGAGATTGCCCGTGTCGTGGACAAGCGTTTCCTGCACAGATTCGACAGGCTGTCCGAAAGAGTGCAGGCTCGCATCCGATTGGGGCTGTTCGTTCTCATAGGTTTGTCCTCGGCTTTACTCGTGATACATGGACTGAATATCGTGCGCTATCCCGTTGTAAAGCATATGGACATTCGTCTGGACAGACCTGCCATAGATGGAAGGCAGTCCATGAAAGTAGCCCTGCTCACGGATATTCATATTAGCGAAACGGTGACGGCCGGCCATATCCGCGAGATGGTGGAGAGGACTTTGGCCGAACGTCCGGATATTGTTCTGATCGGTGGGGATATGATCGACTATCATGGCAGGTATGCTCGTCGGGACAGCATCACGGAGTATATGCGCCGCCTACAGGATGAGACTCCCATGGGGGCTTACTATGTACTGGGCAATCATGAATATAGGGCGGACGAAGTAGAGAAGCGCGAGTGGTTCCGTTCGATTGGCCATCTGGTGATCGATCAGGTTGTCACCCCGGGCAATGCATTCTATCTGATAGGACGGGACGATAGCACGAATGTATTCCGTGCTCCGCTGCACAAGCTTATGCCACATGTCGATACCACTAAGGCCTCTATCCTGCTCGATCACCAGCCGCACAAGCTCGACAGCGTGGCGATGACCGGTGTGGACTTGGCTCTGTACGGGCACACGCACAACGGACAGATCTGGCCGTTTACGATTTTGACCCAACTGGCTTTTGAAAAATCATGGGGCTATCTTCGCAAAGGGCATACGCAGTTCTATGTCAGTTCAGGAGTAGGAGCGGCCGGACCGGCTATTCGTGTTTTCACGGAGAGTGAGATCGTCATTCTGAATGTTCGGTTTGCCTCCGAAAACAAACCGGTTCAT","10.10","10.05","43763","MKVFLEAFLLQYLLTLYIAYRGGQALPQKSLWRKGFHLLMGVVFTLYLIGFAGNRVLPDAVMSCIMSVTGFWFVMSIYAMFAMVIVEIARVVDKRFLHRFDRLSERVQARIRLGLFVLIGLSSALLVIHGLNIVRYPVVKHMDIRLDRPAIDGRQSMKVALLTDIHISETVTAGHIREMVERTLAERPDIVLIGGDMIDYHGRYARRDSITEYMRRLQDETPMGAYYVLGNHEYRADEVEKREWFRSIGHLVIDQVVTPGNAFYLIGRDDSTNVFRAPLHKLMPHVDTTKASILLDHQPHKLDSVAMTGVDLALYGHTHNGQIWPFTILTQLAFEKSWGYLRKGHTQFYVSSGVGAAGPAIRVFTESEIVILNVRFASENKPVH","5041 3890","TIGR ID: PG0005","integral membrane protein; phosphoesterase/phosphohydrolase","Inner membrane, Cytoplasm","Several hits in gapped BLAST to integral membrane proteins, some of which are identified as phosphoesterases. (EC 3.1.-.-). Residues 73-374 are 28% similar to a hypothetical protein of Helicobacter (AE001473).","
InterPro
IPR004843
Domain
Metallophosphoesterase
PF00149\"[157-321]TMetallophos
InterPro
IPR011156
Family
Membrane-bound phosphoesterase HP1044
PIRSF000888\"[1-378]TPesterase_HP1044
noIPR
unintegrated
unintegrated
G3DSA:3.60.21.10\"[157-325]TG3DSA:3.60.21.10
SSF56300\"[157-375]TSSF56300


","BeTs to 7 clades of COG1408COG name: Predicted phosphohydrolasesFunctional Class: RThe phylogenetic pattern of COG1408 is --t--q--eBr-uj----in-Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 275-374 are 42% similar to a (PROTEIN CONSERVED INTERGENIC REGION) protein domain (PD007404) which is seen in Q9ZM43_BBBBB.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Nov 28 15:52:40 MST 2000","Tue Nov 28 15:52:40 MST 2000","Mon May 21 16:27:53 MDT 2001","","Mon May 21 16:27:53 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Wed Mar 8 11:45:14 MST 2000","Mon May 21 16:27:53 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 157 to 321 (E-value = 2.2e-13) place PG0005 in the Metallophos family which is described as Calcineurin-like phosphoesterase (PF00149)","Mon May 21 16:27:53 MDT 2001","34539885","","","","","","1","","","PG0005" "PG0006","6422","5097","1326","TTGTTTCACTATGCTCTGCCGGCGGTGGTGGGTACAGCAGTCAATTCGCTATACAACATCGTAGACCGCATCTTCATCGGGAACGGGGTGAGCGAATATGCCTTGTCGGGCTTGGCTATCACCTTCCCAATCCTGATCTTCCTGATGGCCTTCGGTATGCTGGTAGGGGCCGGTGCGTCCGTGAGGGTCTCTATCCTGCTGGGGAGAAAAGACATAAAGGAGGCCGAACACACACTGGCCAATGCCATCTTCCTGACCTTCTTCACACAAGCCCTGACCATTATCCCCTGCTATATTTTCATGGAGCCGCTGCTTCGGCTGTTCGGAGCCAGCGAACGTACGTTGCCGTATGCCATGGAATACCTCCAATACGTGGTTCCTGCCAATATTTTCTCAGCTCTGAGCTTCGGCTACAATGCTATCATGAGAGCTTCGGGCTATCCGCGCAAAGCCATGATTACGATGATCATCGGGGCTATGACGAACGTGGTGCTGGACTACATCTTCATCTATCCGTTGGGGATGGGGATAAGCGGAGCCGCCATAGCGACTGTCGTCTCCATGATAGTATGTTCGGTCTACGTCCTTTCGCACTTTTTCCGTAAGGACAGTATCGTACGTTTCCACCGCTCGGCTTTCCGCCTGTCCCTGCCGGTGATCGGCGGCATAACGGCTATAGGGGTAGCACCCTTCGCCATGCACCTTACGGGCAGTCTGGTCAATATCATCATGAATCGTTCTTTCGTATCCTACGGCGAGACAGCAGATGCTACCGACTTGGCCATCGGAGCATTCGGGATTATCAATGGCTATGCCATGCTCTTTTTCATGATTATCATCGGTGTGGCTCAGGGGATGCAGCCGATCGTAGGTTTCAACTACGGGGCTAAAAATCCGGGACGGGTGAAGTCGGCCTATCGCTACAGTTGTGGCGTCAATCTACTGGTCAGCTTTCTCGGTTTTGCTCTGGCTATGCTTATGCCGAGGACAATCGTGAGTCTATTCACCAATAGCGAACAGATGATAGAGCTATCTGCTTCGGCTCTTCGCACGGCCTTGATCGGGCTTTCTCTGGTCGGCTTTCAAGTTACCACGACGCAATTCTTCCAAAGCATCGGCTTCAGCCATAAGGCTATTTTCCTGAGCCTAACGCGCCAGATCATCTTCCTGATTCCCTGTTTGCTGATTATCCCCCGATTCATGGGGTTGGACGGCGTGTGGTGGAGTCTGCCGATCAGCGATCTGGCCTCGGTCGTTTTGTCTTTTGTGCTAATTACCATACAGATGAAGCATTTCAATCAATCGAAAAAAACTACTTTCGCGGAG","10.20","11.49","48303","LFHYALPAVVGTAVNSLYNIVDRIFIGNGVSEYALSGLAITFPILIFLMAFGMLVGAGASVRVSILLGRKDIKEAEHTLANAIFLTFFTQALTIIPCYIFMEPLLRLFGASERTLPYAMEYLQYVVPANIFSALSFGYNAIMRASGYPRKAMITMIIGAMTNVVLDYIFIYPLGMGISGAAIATVVSMIVCSVYVLSHFFRKDSIVRFHRSAFRLSLPVIGGITAIGVAPFAMHLTGSLVNIIMNRSFVSYGETADATDLAIGAFGIINGYAMLFFMIIIGVAQGMQPIVGFNYGAKNPGRVKSAYRYSCGVNLLVSFLGFALAMLMPRTIVSLFTNSEQMIELSASALRTALIGLSLVGFQVTTTQFFQSIGFSHKAIFLSLTRQIIFLIPCLLIIPRFMGLDGVWWSLPISDLASVVLSFVLITIQMKHFNQSKKTTFAE","6473 5097","TIGR ID: PG0006","probable integral membrane protein","Inner membrane, Cytoplasm","Numerous significant hits in gapped BLAST to conserved hypothetical proteins e.g., residues 2-430 are 23% similar to AE001538 of Helicobacter pylori; residues 7-436 are 27% similar to MJ0709 of Methanococcus jannaschii; residues 2-430 are 24% similar to AE000624 of Helicobacter pylori; residues 5-434 are 27% similar to AE001810 of Thermotoga maritima.This sequence is similar to BT2121.","
InterPro
IPR002528
Family
Multi antimicrobial extrusion protein MatE
PTHR11206\"[21-437]TMULTIDRUG RESISTANCE PUMP
PF01554\"[7-168]T\"[230-395]TMatE
TIGR00797\"[7-407]TmatE: MATE efflux family protein
InterPro
IPR015522
Family
Na+ driven multidrug efflux pump
PTHR11206:SF6\"[21-437]TNA+ DRIVEN MULTIDRUG EFFLUX PUMP
noIPR
unintegrated
unintegrated
signalp\"[1-16]?signal-peptide
tmhmm\"[5-25]?\"[39-59]?\"[80-100]?\"[124-142]?\"[152-170]?\"[180-200]?\"[215-235]?\"[271-291]?\"[312-332]?\"[346-364]?\"[379-401]?\"[407-427]?transmembrane_regions


","BeTs to 14 clades of COG0534COG name: Probable cation efflux pump (multidrug resistance protein)Functional Class: RThe phylogenetic pattern of COG0534 is amtKYqVCEBrhUJgpOl---Number of proteins in this genome belonging to this COG is 4","No significant hit to the Blocks database.","Residues 262-430 are 22% similar to a (PROTEIN CONSERVED INTEGRAL MEMBRANE) protein domain (PD114832) which is seen in O25796_HELPY.Residues 100-243 are 26% similar to a (PROTEIN TRANSMEMBRANE MVIN MEMBRANE TRANSPORTER) protein domain (PD001019) which is seen in Q9ZK32_BBBBB.","","Tue Jun 12 14:12:38 MDT 2001","","Tue Jun 12 14:12:38 MDT 2001","Tue Jun 12 14:12:38 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Tue Jun 12 14:12:38 MDT 2001","Tue Jun 12 14:12:38 MDT 2001","","","Fri Dec 1 16:07:53 MST 2000","Wed Dec 10 14:43:34 2003","Fri Mar 23 08:32:16 MST 2001","","Wed Dec 10 14:43:34 2003","yes","Fri Feb 20 15:41:32 MST 1998","Residues 6-439 are 28% similar to PG1265, a conserved hypothetical protein (probable integral membrane protein). Residues 6-439 are 28% similar to PG0742,a conserved hypothetical membrane protein, and residues 1-415 are 19% similar to PG0577, a DNA damage-inducible protein. Residues 1-343 are 20% similar to PG1432, a DNA damage-inducible protein.","Tue Jun 12 14:42:16 MDT 2001","Fri Mar 23 08:32:16 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 7 to 168 (E-value = 1.9e-27) place PG0006 in the MatE family which is described as MatE (PF01554)Residues 230 to 395 (E-value = 3.6e-14) place PG0006 in the MatE family which is described as MatE (PF01554)","Wed Dec 10 14:43:34 2003","34539886","","","","","","1","","","PG0006" "PG0007","8113","7178","936","CTGCTTGGCTTTAGCCGTCAGGCCTTTTATAAACGTCATCTCAACGATTTAGCTAGGCACGAGGAGGATGTCCTATGCAGTAGTATCATCCAATATTGTTGGCACTTAAGACAAGCAGAGCACCTACCTCAAGCCGGCTTCCGAGAGCTCATGGTGCTTTGTCAGCAATACTTCGGCCCCAAGTTCACGCTTGGGCGCGATCGCTTTTGCGCCCTACTCAGACGCCATGGTATGATGCTGCGCAAACGGTCTGTGCGCCCTCGGACAACCAACTCTCGGCATAGGCTCTACAAGTATGAAGACCTGCTCAATACAGAGCCTAAGTTTGTGCCTCAAAGACCTGGGGAACTCCTTGTAGCAGACATCACCTACGTGGCTTACCAAGATGGGTTTGCCTATCTCTCCCTACTGACCGATGCCTATAGTCGCTGTATCGTAGGGTATTGCTTACATCCGACCCTGGAAGTTGAAGGCTGTTTGAATGCTCTGCATCAAGCCTTTGCTTTCTACGATCAACATCAAATTGATACGACCAATATGATTCATCATAGCGACCGAGGCATTCAGTATGCCGGTAAGAGTTACACCGATCTGTTGCATGGGCGAGGCTGGCGCATCAGTATGACTCAGACGGGAGATCCTCTGCATAATGCATTGGCCGAGCGGATGAACAATACGCTCAAGAACTCATGGCACATCTCCTCTTCGAAACAATCTTTTGATCAAGCACTCCTTTCTGTAGACCGAGCCGTGCGCATGTACAACGAGGCGCGTCCACATCAAGCTCTAAGGGCGAAAACGCCTATGCAAGTCATTACACCGGAGTCTGAAAATCCGTTACTGGCAAGGATCGAACATTGGCCGGAGATTGCCCCCGAGCTATACCGAAGAATGAATGTCAGACAAAAAGCTAACTTTGCTCGTGTCAACCGAAAT","10.00","14.52","36460","LLGFSRQAFYKRHLNDLARHEEDVLCSSIIQYCWHLRQAEHLPQAGFRELMVLCQQYFGPKFTLGRDRFCALLRRHGMMLRKRSVRPRTTNSRHRLYKYEDLLNTEPKFVPQRPGELLVADITYVAYQDGFAYLSLLTDAYSRCIVGYCLHPTLEVEGCLNALHQAFAFYDQHQIDTTNMIHHSDRGIQYAGKSYTDLLHGRGWRISMTQTGDPLHNALAERMNNTLKNSWHISSSKQSFDQALLSVDRAVRMYNEARPHQALRAKTPMQVITPESENPLLARIEHWPEIAPELYRRMNVRQKANFARVNRN","7963 7178","One of eleven ISPg5 elements in the genome (see Paralogs). Califano et al. report considerable strain diversity of these: \"When a recombinant plasmid containing much of ISPg5 was used in Southern analysis of several P. gingivalis strains, including clinical isolates, diversity among strains was apparent. This suggests that ISPg5 and other IS elements may contribute to strain diversity and can be used for strain fingerprinting.\" (Infect. Immun. 68 (9), 5247-5253 (2000)).Member of the IS3 family of insertion elements. See PG0008 for associated ORF.TIGR ID: PG0008","ISPg5 transposase","Cytoplasm","PG0007 is equivalent to the previously reported gb|AAF69128.1| in GenBANK.Numerous significant hits in gapped BLAST to transposase proteins; e.g. residues 91-213 are 55% similar to transposase homolog (U67062) of Bacteriodes thetaiotaomicrom, residues 64-268 are (33%) similar to InsB (AF153317) of Shigella dysenteriae, residues 64-268 are 33% similar to Hp1 (AF081284) of E.coli.","
InterPro
IPR001584
Domain
Integrase, catalytic core
PF00665\"[110-273]Trve
PS50994\"[110-276]TINTEGRASE
noIPR
unintegrated
unintegrated
G3DSA:3.30.420.10\"[113-231]Tno description


","No hit to the COGs database.","***** PF01836 (Transposase) with a combined E-value of 6.4e-22. PF01836B 103-154 PF01836C 181-190 PF01836D 215-222 PF01836E 253-272","No significant hit to the ProDom database.","","Tue Jun 12 14:43:06 MDT 2001","Wed Mar 8 09:14:38 MST 2000","Tue Jun 12 14:43:06 MDT 2001","Tue Jun 12 14:43:06 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Tue Jun 12 14:43:06 MDT 2001","Tue Jun 12 14:43:06 MDT 2001","","Tue Jun 12 14:50:03 MDT 2001","Fri Feb 9 15:41:55 MST 2001","Tue Jun 12 14:50:03 MDT 2001","Thu Nov 16 10:14:45 MST 2000","Fri Feb 9 15:41:55 MST 2001","","yes","Fri Feb 20 15:41:32 MST 1998","PG0007 is paralogously related to PG1861, PG1491, PG0391, PG0418, PG1436, PG1796, PG0034, PG0533, PG1247 and PG0841, all ORFs associated with ISPg5-related transposases.","Wed Mar 28 14:44:18 MST 2001","Fri Feb 9 15:41:55 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 110 to 273 (E-value = 2.9e-29) place PG0007 in the rve family which is described as Integrase core domain (PF00665)","Wed Mar 28 14:44:18 MST 2001","34539888","","Califano,J.V., Kitten,T., Lewis,J.P., Macrina,F.L.,Fleischmann,R.D., Fraser,C.M., Duncan,M.J. and Dewhirst,F.E.Characterization of Porphyromonas gingivalis insertion sequence-like element ISPg5. Infect. Immun. 68 (9), 5247-5253 (2000). PubMed: 10948151.","","Wed May 30 16:54:34 MDT 2001","","1","","1","PG0008" "PG0008","8556","8170","387","TTGGGCGGGATGCAACCAGTATCCATTATGGGCAAACATTTAAACAACTTTGAACGCCTTAGCATCCTTGAGGATTACCTCTCGGGGTCAGATAGCAAAGTAGCCATTGAGCAGAAATATGGTCTAAGTCATGGTCTCATTCGCTCTTGGCTTAGTAAATTTGGACTCGAAGATAAAGTTCATCCGGTCCCAATGAAAGTGTCCCAATCCCCCCAGAGTGAGCTACCCCTGAACGAAAAAGAAGAGTTAGAGCAGCTACGTAAAGAAAATCGTGTCCTCAAGAGTCGTCTCAAGCGAGAAGAACTAGGGCATCAAGCCTACAAGCTACTTGTAGAGTTGGCAGAAGAAACCTACGGCATTCAGATACGAAAAAACTCCGAAGCCAAG","9.00","1.96","14755","LGGMQPVSIMGKHLNNFERLSILEDYLSGSDSKVAIEQKYGLSHGLIRSWLSKFGLEDKVHPVPMKVSQSPQSELPLNEKEELEQLRKENRVLKSRLKREELGHQAYKLLVELAEETYGIQIRKNSEAK","8556 8170","See PG0007 for associated transposase.Member of the IS3 family of insertion elements.TIGR ID: PG0009","ISPg5-related orf-1","Cytoplasm","PG0008 is equivalent to the previously reported gb|AAF69127.1 in GenBANK.Otherwise, no significant hits in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Wed Mar 8 09:30:18 MST 2000","Wed Mar 8 09:30:18 MST 2000","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Fri Feb 9 15:49:48 MST 2001","Fri Feb 9 15:44:24 MST 2001","Fri Feb 9 15:49:48 MST 2001","Thu Nov 16 10:11:28 MST 2000","","","yes","Fri Feb 20 15:41:32 MST 1998","PG0008 is paralogously related to PG1862, PG1797, PG1490, PG1437, PG0033, PG0532, PG0392, PG1246, PG0840 and PG0419, all ORFs associated with ISPg5-related transposases. ","Tue Dec 19 15:39:11 MST 2000","Fri Feb 9 15:44:24 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed May 30 17:11:43 MDT 2001","34539889","","Califano,J.V., Kitten,T., Lewis,J.P., Macrina,F.L.,Fleischmann,R.D., Fraser,C.M., Duncan,M.J. and Dewhirst,F.E.Characterization of Porphyromonas gingivalis insertionsequence-like element ISPg5. Infect. Immun. 68 (9), 5247-5253 (2000). PubMed: 10948151.","","Wed May 30 17:11:43 MDT 2001","","1","","1","PG0009" "PG0009","8915","11491","2577","ATGGCATACGACTTTACACAAACATTCCGCAACAGCCTGGAGTACAGCTATCAGGAAGCAACCCGTCTCGGCGTCGTAGCCGTGACGCAAGATATGCTCGTACTCGGTATCATTCGCGACGGAGACAATGGCGCGATCGACATCATGCGGCACTATGGGATCAACTTGTACGAACTCAAACGGTTGATCGAGTTGGAAGCCATCGCCGAGAGTTTGCCTGCTTCGCCTGAGGGATCGCCCATCTTCACCCCTTCGGCTCGGGAGGCTATCGATGATGCCACAGACATCTGTGCCGACATGGAGGACGAGGCCGTCAGCCCGGTCCATCTGTTGCTGAGTATCCTCAACTCGACACAGGAGAGCTTAGTACAAAAGATATTTATGAAACAAGGTATAAAATACGACACCATCCTGTCGGATTACTTCGGACAGCGCAACCCCTCCGAAGGGAAGTCTCCCTCCGAAATGGAGATCCTCGACGGGTACCAAGACAACGACTTCGACGACGAAGAGGACGAATCCTCTCCGCCTTCCGGGAATAGCGGGACAGGCGGAGGCTCCGGCGACGCCCCCGAACAGAATACCGGCGGAGGCGATACTACCACCACGACACGGAGTGGAGGCGACACGCCTGCACTGGACACCTTCGGCACCGACATCACTGCCATGGCGGCAGCAGGCAAGCTCGACCCGGTAGTGGGTCGGGAGCAGGAGATCGAAAGGGTGATACAGATACTCAGCCGGCGCAAAAAGAACAATCCGGTGCTCATCGGCGAACCCGGTGTAGGCAAGAGTGCCATCGTGGAAGGACTGGCCGAACGCATCGTGAACAGGAAGGTGAGCCGTATTCTTTTCGACAAGCGGATCATCAGCCTCGATTTGGCTCAGATGGTAGCCGGCACCAAATATCGCGGACAGTTCGAAGAGCGGTTGAAAGCCGTGCTCGATGAGCTGAAGAAGAATCCGCAGATCATCCTCTTCATCGACGAGATACATACCATCGTGGGAGCAGGCTCTGCAGCCGGATCGATGGATACGGCCAATATGCTCAAACCCGCTCTTGCCCGTGGACAGGTACAGTGCATCGGAGCCACTACGCTGGATGAGTATCGTAAGAACATAGAAAAGGACGGAGCACTCGAACGCCGCTTCCAGAAGGTGCCGATAGCCCCCTCGACTGCAGAAGAAACGCTGACCATCCTGCAAAACATCAAAGAGAAATACGAGGACTATCACGGTGTACGCTATACGGACGAAGCGATCAAAGCGGCAGTGGAACTGACCGATCGCTATGTATCCGATCGTTTCTTCCCAGATAAGGCGATAGATGCCATGGACGAGGCCGGCGCGAGCGTCCATATCACCAATGTGGTGGCTCCGAAAGAAATCGAGATACTGGAGGCCGAATTGGCATCGGTGCGAGAGAACAAGCTCTCGGCCGTAAAGGCTCAGAACTACGAACTGGCTGCCTCCTTCCGCGATCAGGAGCGGCGCACTCAGCAGCAGATAGCGGAAGAGAAGAAAAAATGGGAAGAGCAGATGTCCAAGCACCGCGAGACGGTGGACGAGAATGTAGTGGCGCATGTAGTGGCGTTGATGACAGGCGTTCCGGCTGAGCGGCTGAGCACGGGCGAAGGCGAACGTCTGCGCACGATGGCAGATGATCTCAAGACCAAAGTAGTAGGTCAGGACACAGCCATCGAAAAGATGGTGCATGCCATCCAGCGCAATCGTCTGGGACTTCGCAATGAAAAGAAACCGATCGGTTCTTTCCTTTTCCTCGGCCCCACGGGGGTAGGCAAGACCTATTTGGCCAAGAAGCTCGCCGAATACCTGTTCGAGGATGAGAATGCCATGATCAGGGTGGATATGAGCGAGTATATGGAGAAGTTCTCCGTTTCGCGTCTCGTGGGTGCCCCTCCGGGATATGTGGGCTATGAAGAAGGCGGCCAACTGACGGAGCGCGTAAGACGCAAACCCTATTCCGTGGTTCTCTTGGATGAGATCGAAAAGGCGCATGCCGATGTCTTCAATCTGCTCTTACAGGTGATGGACGAAGGTCAGCTGACCGACAGTCTGGGACGGCGCGTGAATTTCAAGAACACCGTGATCATCATCACCTCCAACGTGGGTACACGCCAGCTCAAAGACTTCGGGCAGGGTATCGGGTTCCGTTCGGAAAAAGACGAGGAAGCGAACAAGGAGCATAGCCGTTCCGTGATCCAAAAAGCTCTGAACAAGACGTTCAGCCCCGAATTTCTCAACCGTTTGGACGATATCATCCTCTTCGACCAACTGGGCAAGACGGAGATTCGCCGGATGGTGGACATAGAGCTTAAAGCCGTCTTGGCGCGCATCCATCGTGCCGGATACGACCTCGTCCTTACCGATGAAGCCAAGGATGTGATAGCGACGAAGGGATACGACCTCCAATACGGAGCACGACCGCTCAAGCGCACACTCCAGAACGAAGTGGAGGATCGCCTCACGGATCTTATCCTCTCCGGACAGATCGAGAAAGGGCAGACGCTTACGCTCTCTGCTCGCGATGGCGAGATCATCGTACAAGAACAAGCA","4.80","-31.30","95422","MAYDFTQTFRNSLEYSYQEATRLGVVAVTQDMLVLGIIRDGDNGAIDIMRHYGINLYELKRLIELEAIAESLPASPEGSPIFTPSAREAIDDATDICADMEDEAVSPVHLLLSILNSTQESLVQKIFMKQGIKYDTILSDYFGQRNPSEGKSPSEMEILDGYQDNDFDDEEDESSPPSGNSGTGGGSGDAPEQNTGGGDTTTTTRSGGDTPALDTFGTDITAMAAAGKLDPVVGREQEIERVIQILSRRKKNNPVLIGEPGVGKSAIVEGLAERIVNRKVSRILFDKRIISLDLAQMVAGTKYRGQFEERLKAVLDELKKNPQIILFIDEIHTIVGAGSAAGSMDTANMLKPALARGQVQCIGATTLDEYRKNIEKDGALERRFQKVPIAPSTAEETLTILQNIKEKYEDYHGVRYTDEAIKAAVELTDRYVSDRFFPDKAIDAMDEAGASVHITNVVAPKEIEILEAELASVRENKLSAVKAQNYELAASFRDQERRTQQQIAEEKKKWEEQMSKHRETVDENVVAHVVALMTGVPAERLSTGEGERLRTMADDLKTKVVGQDTAIEKMVHAIQRNRLGLRNEKKPIGSFLFLGPTGVGKTYLAKKLAEYLFEDENAMIRVDMSEYMEKFSVSRLVGAPPGYVGYEEGGQLTERVRRKPYSVVLLDEIEKAHADVFNLLLQVMDEGQLTDSLGRRVNFKNTVIIITSNVGTRQLKDFGQGIGFRSEKDEEANKEHSRSVIQKALNKTFSPEFLNRLDDIILFDQLGKTEIRRMVDIELKAVLARIHRAGYDLVLTDEAKDVIATKGYDLQYGARPLKRTLQNEVEDRLTDLILSGQIEKGQTLTLSARDGEIIVQEQA","8915 11491","The proteolytic subunit of the CLP protease is PG0384.TIGR ID: PG0010","CLP protease ATP-binding subunit (CLPA/CLPB/CLPC)","Cytoplasm","Numerous significant hits in gapped BLAST to ATP-dependent Clpprotease proteins; e.g. residues 5-859 are 44% similar to the protein in Bacillus subtilis (D26185), residues 15-854 are 44% similar to HEMOLYSIN B of Brachyspira hyodysenteriae (X73140), residues 5-855 are 43% similar to AtClpC of Arabidopsis thaliana (AB022324), residues 211-850 are 55% similar to ATP-dependent Clp protease of Aquifex aeolicus (AE000733).This sequence is similar to BT0898.","
InterPro
IPR001270
Family
Chaperonin clpA/B
PR00300\"[591-609]T\"[636-654]T\"[665-683]T\"[698-712]TCLPPROTEASEA
PS00871\"[621-639]TCLPAB_2
InterPro
IPR001943
Domain
UvrB/UvrC protein
PF02151\"[467-502]TUVR
PS50151\"[467-502]TUVR
InterPro
IPR003593
Domain
AAA+ ATPase, core
SM00382\"[250-390]T\"[587-767]TAAA
InterPro
IPR003959
Domain
AAA ATPase, core
PF00004\"[253-407]TAAA
InterPro
IPR004176
Domain
Clp, N-terminal
PF02861\"[16-68]T\"[93-146]TClp_N
InterPro
IPR013093
Domain
ATPase AAA-2
PF07724\"[586-760]TAAA_2
noIPR
unintegrated
unintegrated
G3DSA:1.10.1780.10\"[4-149]TG3DSA:1.10.1780.10
G3DSA:1.10.8.60\"[766-855]TG3DSA:1.10.8.60
G3DSA:3.40.50.300\"[209-402]T\"[539-765]TG3DSA:3.40.50.300
PTHR11638\"[1-151]T\"[196-688]TPTHR11638
PTHR11638:SF19\"[1-151]T\"[196-688]TPTHR11638:SF19
SSF81923\"[3-143]TSSF81923


","BeTs to 14 clades of COG0542COG name: ATPases with chaperone activity, ATP-binding domainFunctional Class: OThe phylogenetic pattern of COG0542 is --t-YQVCEBRhUJgpOLINxNumber of proteins in this genome belonging to this COG is 2","***** IPB001270 (Chaperonins clpA/B) with a combined E-value of 1.4e-222. IPB001270A 238-270 IPB001270B 275-323 IPB001270C 324-338 IPB001270D 364-412 IPB001270E 521-575 IPB001270F 598-635 IPB001270G 636-671 IPB001270H 678-712 IPB001270I 749-763 IPB001270J 807-821 IPB001270G 635-670***** IPB001939 (AAA-protein (ATPases associated with various cellular activities)) with a combined E-value of 4.6e-06. IPB001939A 557-577 IPB001939B 588-609","Residues 440-518 are 43% similar to a (ATP-DEPENDENT CLP PROTEASE PROTEASE) protein domain (PD171497) which is seen in O67325_AQUAE.Residues 361-404 are 65% similar to a (PROTEASE PROTEIN HEAT SHOCK ATP-BINDING CHAPERONE REPEAT) protein domain (PD001382) which is seen in O84288_CHLTR.Residues 216-360 are 64% similar to a (PROTEASE ATP-DEPENDENT CLPC CLP SUBUNIT A CLPA ATPASE) protein domain (PD187342) which is seen in Q9Z8A6_BBBBB.Residues 405-516 are 35% similar to a (PROTEIN COILED COIL REPEAT FILAMENT HEPTAD PATTERN CHAIN) protein domain (PD000002) which is seen in Q9ZEA9_RICPR.Residues 440-503 are 43% similar to a (PROTEASE ATP-BINDING CHAPERONE REPEAT PROTEIN HEAT SHOCK) protein domain (PD005402) which is seen in MECB_BACSU.Residues 521-843 are 71% similar to a (PROTEIN ATP-BINDING PROTEASE SUBUNIT REGULATORY HOMOLOG) protein domain (PD000092) which is seen in O67325_AQUAE.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Tue Mar 26 11:10:08 2002","Wed Mar 22 12:52:13 MST 2000","Thu Dec 4 09:59:25 2003","Tue Mar 26 11:10:08 2002","Fri Mar 2 13:37:07 MST 2001","Fri Mar 2 13:37:07 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 4-858 are 38% similar to PG1000.","Fri Mar 10 11:27:02 MST 2000","Fri Jun 4 15:36:22 2004","-67% similar to PDB:1QVR Crystal Structure Analysis of ClpB (E_value = 1.2E_176);-61% similar to PDB:1KSF Crystal Structure of ClpA, an HSP100 chaperone and regulator of ClpAP protease: Structural basis of differences in Function of the Two AAA+ ATPase domains (E_value = 1.5E_131);-61% similar to PDB:1R6B High resolution crystal structure of ClpA (E_value = 1.5E_131);-80% similar to PDB:1JBK Crystal Structure of the First Nucelotide Binding Domain of ClpB (E_value = 1.6E_64);","","","Residues 253 to 450 (E-value = 1e-11) place PG0009 in the AAA family which is described as ATPase family associated with various cellular activities (AAA) (PF00004)Residues 590 to 806 (E-value = 9.4e-05) place PG0009 in the AAA family which is described as ATPase family associated with various cellular activities (AAA) (PF00004)","Thu Dec 4 09:59:25 2003","34539890","","","","","","1","","1","PG0010" "PG0010","11634","14642","3009","ATGAAACGATTTCTTTTCTCCGCCATCACAATACTCTCTCTCTCGGTGCTGTACACAGCTACGGCACCGGCCCGCACGAACATGGGTGCCATGCATGCCCAGCAGTCCAAAGACTATCCCTTTCTCCTCTTCGGGGGAGTCGAGAGCAAAGATGTCAAACGCTGGGTTGACGACCGCATGAAGGCTATGAGCACGGAGGAAAAAGTAGGCCAGCTGCTCATGCCGATCGTCTATCCCTCTTTACAGGAAGAAAAAGTAAAGCAAGCCGAACAGCTGGTGCGCACCTGCCACATCGGGGGCATACTCTTCCAAAAGGGTACACTCTCGGAGCAATACACGATGACTCGCCGCTTGCAGGAAGCAGCCGGCACCCCTCTCCTCATAGCACTGGACGGTGAGTGGGGTTTGCACATGCGTCTGAAAGATGCCCCACGCTTCCCTCGCAATATGGGCTTGGGACACCAAAAAGACAATCAGCTCCTCTACAACTATGGTCGGGAGGTAGCGCGCCAATGCCGGCTGATGGGGATTCATATCAATTTTGCTCCGGTGCTGGACGTGAACAACAATCCGAAGAACCCTGTTATCGGCACGCGCAGCTTCGGCGACAACCCACGCCGAGTAGCAGAAAGAGGGATTGCCTATGCACAAGGATTGGAGGACGGAGGAGTGATGGCCGTGGCCAAGCATTTCCCCGGACACGGCAATACCACAGAGGACTCGCACAAGACCTTGCCCACGGTCTTTGCCTCCCGAGAGGAATTGGAGAATACTGAATTGTTCCCCTTCAAGGAGTTTTTCCGAGCCGGCCTCAGCGGAGTGATGACCGCTCACCTCAATGTTCCGGCTTTGGAAGCAAAGAAAAATACGCCCTCCTCCCTCAGTCATGCCATCTGCACCGATCTGCTTCGGCAGGAAATGGGTTTCAAGGGGCTGATCTTTACGGACGGACTGGCCATGCAGGGAGTACAGACAGCCGGTTCTCAACCGATCTCCGTCCGTGCCATATTGGCCGGCAATGACATCCTCCTCGGTCCGGTGGACCCGGTCAAGACTTTCTCCGAGGTGCTGGCCGCAGTGGAAGACAGAACGATAAGCAAAGAATTGCTGGACGAGAAATGTCGCAAAATTCTGGCCTTCAAGTATGCGCTCATCATTTGTAAGGGAATATCCAAGGAGCTACCGGCAGAGGAAGTGGTACGACAGGTAAACAGCCGTGAAGCGGAACGGATGTCGGAAGATCTTTGGCAGGCATCCATTACGATTCTCAAAAACAAGAAGCACTTCCTCCCCCTCTCGGAGGGAAACCGTATTGCATGCGTCAATCTAGATGGTGCAGCCTCCAATACTTTTACACAAGAGCTGGGGCTTACGAGCAAGGACTGCTATTCCTATGCCAAGGGCAGCAACAGTACACGTACACAAGAGTTGCTCTCCAAACTCAAGGGGTACGATGCTGTGATCGTCACAGTTCGACATACACAGCCGGACTGGGCAGGAACGTTTCTCCACCGGCTGACGGAACAAAACCACACTGCCATCGTCTTCTTCACATCGCCCTATGTAGCCGATAGGATTCCGGCGGCTATGGACAAAGCTCGGGCTATAGTCGTGGCATATGAAAACGTAAAGGAGGCTGCTCGAATGGCAGCCTACAAGATTCGGGACAGAGTTGTGGTATCCTCGGGCGGTGGGATCCCGGTCGTTCAGGAAGAGGAGGACACTGATCCGACAGCGAACATGATGCCGCCGACCGAATTGTCGTCCGGCCTCATCCCGATGCCGGCGGTAGACCGCATAGCGAAAGAAGCCCTAAGGCAAGGGGCTTTCCCCGGTTGTCGTATCCTCGCTGTCCATCGAGACAAGGTGGTATATGACAAAAGCTTCGGCACTCTCGACGGATCGGCACGTGGAGGCAAGGTGTCTTCTTCCACCATCTACGACTTGGCATCCGTCACCAAGGTCGTAGCCACTACTCCGGCTGTGATGCTATTGGTTCAGGATGGAAAATTGAAGCTCTCCGACCGGCTCGGAACGCTATTGCCTCGTTTTGCCCGAACAGACCTCAAAGACATCACCGTACAGCAGCTTCTACTTCATGAAGCAGGCCTTCGGCCATCGATCAATTTCTACGAATCTCTGATAGACAGTAGCAGTTTGGACGGCAAGTTGCTCTCTCCCCGGCGGAGTTCGGGATGGGTTCGAGTAGATACCAATATGTGGGGCAATCCATTCTTCGGATTTCGCTCCGATTTGGTTTCCGGGCAATTTCGGCCGGACTATCCGTTTCGTTTTTCTTCCAATCTGTATCTATCGAAAGAGGTCAAAGAAATTGTCCTCAATACCATCGCTTCTACCCCTCGCAATGGAGTCGGACGCTACAAGTATTCGGATCTGGGGTTTATCCTGCTACAGCAAATTGTGGAAAAAGTATCGGGCAAGAGCTTGAACGTCTTTGTCGAAGAACGTATATTCCGCCCCATCGGAGCCGGTTCGCTCGGTTATCTTCCACTCGATAAATATTCCGTTTCGCGCATTGCACCGGCACAGAACGACAAATTTCTACGTAAAAGCATCGTCCGCGGTACCGTGGACGACGAAGCTGCTGCATGCCTCGGAGGTATATCGGGCAATGCAGGTGTTTTCGGCACTGCGGAGGACGTTGCCCGTGTACTGGACATGTTCATTCATGAAGGCACTTACAAAGGCCACAGAATCATCGATCAAAAGATCTTCCGACTGTTCATAACGACTCATGGCAAGGGCAACAGGCGTTGTCTCGGATTTGACAAAGGCCGGGCGAGTATGGCAGAATCGGCGTCAGGCTCCACCTACGGGCACACAGGGTTTACCGGCACATGCGTTTGGGTCGATCCCGAGAACGAACTTATCTTTGTATTCCTTTCCAATCGGACTTACCCCAATCGGCTGAACAAGACACTGATGACGGCAAGCATACGCCCCAGACTGCATCAAGCAATATACGAGGCTTTGGGAATAGCGGAGCAA","9.70","21.62","110824","MKRFLFSAITILSLSVLYTATAPARTNMGAMHAQQSKDYPFLLFGGVESKDVKRWVDDRMKAMSTEEKVGQLLMPIVYPSLQEEKVKQAEQLVRTCHIGGILFQKGTLSEQYTMTRRLQEAAGTPLLIALDGEWGLHMRLKDAPRFPRNMGLGHQKDNQLLYNYGREVARQCRLMGIHINFAPVLDVNNNPKNPVIGTRSFGDNPRRVAERGIAYAQGLEDGGVMAVAKHFPGHGNTTEDSHKTLPTVFASREELENTELFPFKEFFRAGLSGVMTAHLNVPALEAKKNTPSSLSHAICTDLLRQEMGFKGLIFTDGLAMQGVQTAGSQPISVRAILAGNDILLGPVDPVKTFSEVLAAVEDRTISKELLDEKCRKILAFKYALIICKGISKELPAEEVVRQVNSREAERMSEDLWQASITILKNKKHFLPLSEGNRIACVNLDGAASNTFTQELGLTSKDCYSYAKGSNSTRTQELLSKLKGYDAVIVTVRHTQPDWAGTFLHRLTEQNHTAIVFFTSPYVADRIPAAMDKARAIVVAYENVKEAARMAAYKIRDRVVVSSGGGIPVVQEEEDTDPTANMMPPTELSSGLIPMPAVDRIAKEALRQGAFPGCRILAVHRDKVVYDKSFGTLDGSARGGKVSSSTIYDLASVTKVVATTPAVMLLVQDGKLKLSDRLGTLLPRFARTDLKDITVQQLLLHEAGLRPSINFYESLIDSSSLDGKLLSPRRSSGWVRVDTNMWGNPFFGFRSDLVSGQFRPDYPFRFSSNLYLSKEVKEIVLNTIASTPRNGVGRYKYSDLGFILLQQIVEKVSGKSLNVFVEERIFRPIGAGSLGYLPLDKYSVSRIAPAQNDKFLRKSIVRGTVDDEAAACLGGISGNAGVFGTAEDVARVLDMFIHEGTYKGHRIIDQKIFRLFITTHGKGNRRCLGFDKGRASMAESASGSTYGHTGFTGTCVWVDPENELIFVFLSNRTYPNRLNKTLMTASIRPRLHQAIYEALGIAEQ","11634 14642","PG0010 may be regarded as a fused protein: the N-terminal half is similar to beta-hexosamidase A precursors, the C-terminal half to beta-lactamases. Have a stopped and start codon been missed or is this truly a fused protein?TIGR ID: PG0011","beta-N-acetylglucosaminidase; beta lactamase","Cytoplasm, Periplasm","Numerous significant hits in gapped BLAST to beta-glucosidase proteins; e.g. residues 57-583 are 32% similar to beta-N-Acetylglucosaminidase of Streptomyces thermoviolaceus (AB008771), residues 45-583 are 31% similar to beta-N-acetylglucosaminidase of Streptomyces coelicolor(AL136519), residues 67-384 are 36% similar to beta-glucosidase of Synechocystis sp(D90914).The C-terminal half has the following similarity: residues 577-973 are 27% similar to residues 52-426 of the E.coli beta-lactamase precursor (D90873).This sequence is similar to BT2439.","
InterPro
IPR001466
Family
Beta-lactamase
PF00144\"[597-990]TBeta-lactamase
InterPro
IPR001764
Domain
Glycoside hydrolase, family 3, N-terminal
PR00133\"[121-137]T\"[146-165]T\"[224-240]T\"[302-320]TGLHYDRLASE3
PF00933\"[121-345]TGlyco_hydro_3
PS00775\"[302-319]TGLYCOSYL_HYDROL_F3
InterPro
IPR012338
Domain
Penicillin-binding protein, transpeptidase fold
SSF56601\"[595-998]TPBP_transp_fold
noIPR
unintegrated
unintegrated
G3DSA:3.20.20.300\"[51-384]TG3DSA:3.20.20.300
G3DSA:3.40.710.10\"[596-978]TG3DSA:3.40.710.10
PTHR22935\"[597-720]T\"[782-909]TPTHR22935
PTHR22935:SF10\"[597-720]T\"[782-909]TPTHR22935:SF10
SSF51445\"[49-419]TSSF51445
SSF52279\"[420-564]TSSF52279


","BeTs to 6 clades of COG1472COG name: Beta-glucosidase-related glycosidasesFunctional Class: GThe phylogenetic pattern of COG1472 is ------VcEbRh----O---xNumber of proteins in this genome belonging to this COG is 1","***** IPB001764 (Glycosyl hydrolase family 3) with a combined E-value of 2.9e-12. IPB001764A 223-237 IPB001764B 302-317 IPB001764C 408-431","Residues 311-444 are 33% similar to a (HYDROLASE GLYCOSIDASE BETA-GLUCOSIDASE PRECURSOR) protein domain (PD001660) which is seen in O82840_STRTL.Residues 63-309 are 38% similar to a (HYDROLASE GLYCOSIDASE BETA-GLUCOSIDASE CELLOBIASE) protein domain (PD001132) which is seen in O82840_STRTL.Residues 812-910 are 28% similar to a (YBBE PROTEIN YBZA UCPA-AMIA INTERGENIC REGION PRECURSOR) protein domain (PD022660) which is seen in O05213_BACSU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Wed Dec 17 11:00:05 2003","Mon Apr 23 14:38:48 2001","Wed Dec 17 11:00:05 2003","Mon Feb 5 14:36:55 MST 2001","Mon Apr 23 14:38:48 2001","Mon Apr 23 14:38:48 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Fri Mar 10 16:35:45 MST 2000","Mon Apr 23 14:38:48 2001","-53% similar to PDB:1TR9 Structure of beta-hexosaminidase from Vibrio cholerae (E_value = 4.8E_23);-53% similar to PDB:1Y65 Crystal structure of beta-hexosaminidase from Vibrio cholerae in complex with N-acetyl-D-glucosamine to a resolution of 1.85 (E_value = 4.8E_23);-43% similar to PDB:1EX1 BETA-D-GLUCAN EXOHYDROLASE FROM BARLEY (E_value = 2.3E_17);-43% similar to PDB:1IEQ CRYSTAL STRUCTURE OF BARLEY BETA-D-GLUCAN GLUCOHYDROLASE ISOENZYME EXO1 (E_value = 2.3E_17);-43% similar to PDB:1IEV CRYSTAL STRUCTURE OF BARLEY BETA-D-GLUCAN GLUCOHYDROLASE ISOENZYME EXO1 IN COMPLEX WITH CYCLOHEXITOL (E_value = 2.3E_17);","","","Residues 121 to 345 (E-value = 1.4e-52) place PG0010 in the Glyco_hydro_3 family which is described as Glycosyl hydrolase family 3 N terminal domain (PF00933)Residues 597 to 989 (E-value = 6.7e-40) place PG0010 in the Beta-lactamase family which is described as Beta-lactamase (PF00144)","Wed Dec 17 11:00:05 2003","34539891","","","","","","1","","1","PG0011" "PG0011","14693","15718","1026","ATGATTTTTGGACATGGAGATGAAGGCATTACACCCTTATCAAGCGAAATAGTCAATTTCAGTACCACTGTCTGGACAGATGGCGATAAAGATCATCTGGAGAAACATCTGGTAGAAAACCTCAACTGTATTCGGCACTACCCCGAGCCGGATGCCGGTACGCTCAGGCAGATGCTTGCCAAGCGGAACAGCGTGGACAATAACGCCATACTTGTAACCAACGGACCCACGGCGGCCTTCTACCAAATAGCACAGGCTTTCAGAGGGAGCCGAAGCCTCATAGCCATTCCTTCTTTTGCCGAATATGAGGATGCTTGTCGGATGTACGAGCACGAAGTCTGCTTCTATCCTTCTAATGAGGACATAGGCGAGGCTGATTTTTCCAATATGGATTTCTGCTGGCTTTGTAACCCGAACAATCCCGATGGCAGACTGCTGCAGCGGACAGAGATCCTGCGTCTGCTCAACGATCATCCTGACACGACATTCGTCCTCGACCAGTCCTATGTATCGTTTACGACCGAGGAAGTGATTCGTCCGGCCGACATCAAAGGACGGAAAAACCTTGTCATGGTCTATTCTTTCAGTCATGCCTATGGGATACCGGGGCTTCGCATCGGCTATATCGTAGCCAATAAAGATTTTATGAAGCGTGTGGCGGCTTTCAGTACGCCGTGGGCGGTAAACGCACTGGCTATAGAGGCTGCCAAATTCATCCTTATCCATCCTGCACAATTCACTCTGCCGATCCGCAAGTGGCAACGCAATACGGTAGATTTTATCACAGCCCTGAATCGCCTCGATGGTGTAGAAGTACATCCCTCAGGCACCACGTTCTTCCTCCTTCGCCTCAAGAAAGGAACAGCGGCCGAACTGAAAAAATATATGCTGGAGGAATATAATATGCTGATTCGGGATGCTTCCAATTTCCGTGGTCTCGATGAATCCTACGTCCGAATCACCACGCAGCGACCTGCTCAGAACCAGCTTTTCATCAAAGCTCTGGAGACATTCCTCGAGAAATAC","6.30","-4.05","39011","MIFGHGDEGITPLSSEIVNFSTTVWTDGDKDHLEKHLVENLNCIRHYPEPDAGTLRQMLAKRNSVDNNAILVTNGPTAAFYQIAQAFRGSRSLIAIPSFAEYEDACRMYEHEVCFYPSNEDIGEADFSNMDFCWLCNPNNPDGRLLQRTEILRLLNDHPDTTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSHAYGIPGLRIGYIVANKDFMKRVAAFSTPWAVNALAIEAAKFILIHPAQFTLPIRKWQRNTVDFITALNRLDGVEVHPSGTTFFLLRLKKGTAAELKKYMLEEYNMLIRDASNFRGLDESYVRITTQRPAQNQLFIKALETFLEKY","14693 15718","TIGR ID: PG0012","histidinol-phosphate aminotransferase","Cytoplasm","Numerous significant hits in gapped BLAST to histidinol-phosphate aminotransferase proteins; e.g. residues 17-339 are 27% similar to histidinol-phosphate aminotransferase of Synechocystis sp.(D90906), residues 67-336 are 27% similar to histidinol-phosphate aminotransferase (hisC) of Pyrococcus abyssi (AJ248283), resisdues 64-335 are 26% similar to 328aa long hypothetical histidinol-phosphate aminotransferase of Pyrococcus horikoshii (AP000002), residues 7-335 are 25% similar to histidinol-phosphate aminotransferase (hisC-2) Archaeoglobus fulgidus(AE000963).","
InterPro
IPR004839
Domain
Aminotransferase, class I and II
PF00155\"[47-335]TAminotran_1_2
InterPro
IPR015421
Domain
Pyridoxal phosphate-dependent transferase, major region, subdomain 1
G3DSA:3.40.640.10\"[29-240]TPyrdxlP-dep_Trfase_major_sub1
InterPro
IPR015424
Domain
Pyridoxal phosphate-dependent transferase, major region
SSF53383\"[15-338]TPyrdxlP-dep_Trfase_major
noIPR
unintegrated
unintegrated
PTHR11751\"[31-342]TPTHR11751
PTHR11751:SF3\"[31-342]TPTHR11751:SF3


","BeTs to 11 clades of COG0079COG name: Histidinol-phosphate aminotransferaseFunctional Class: EThe phylogenetic pattern of COG0079 is AmtkyqvCebRH---------Number of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","Residues 47-282 are 26% similar to a (PYRIDOXAL PHOSPHATE AMINOTRANSFERASE TRANSFERASE PROTEIN) protein domain (PD000087) which is seen in HIS8_METJA.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Mar 22 11:44:27 MST 2000","Wed Mar 22 11:45:14 MST 2000","Tue Jan 2 16:03:21 MST 2001","Tue Apr 18 09:31:56 MDT 2000","Mon Apr 23 14:50:30 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1-337 are 39% similar to PG1037.","Mon Mar 20 11:32:31 MST 2000","Mon Apr 23 14:50:30 2001","-50% similar to PDB:1LC5 Crystal Structure of L-Threonine-O-3-phosphate Decarboxylase from S. enterica in its apo state (E_value = 2.1E_35);-50% similar to PDB:1LC7 Crystal Structure of L-Threonine-O-3-phosphate Decarboxylase from S. enterica complexed with a substrate (E_value = 2.1E_35);-50% similar to PDB:1LC8 Crystal Structure of L-Threonine-O-3-phosphate Decarboxylase from S. enterica complexed with its reaction intermediate (E_value = 2.1E_35);-50% similar to PDB:1LKC Crystal Structure of L-Threonine-O-3-Phosphate Decarboxylase from Salmonella enterica (E_value = 2.1E_35);-44% similar to PDB:1H1C HISTIDINOL-PHOSPHATE AMINOTRANSFERASE (HISC) FROM THERMOTOGA MARITIMA (E_value = 7.0E_15);","","","Residues 56 to 339 (E-value = 5.5e-05) place PG0011 in the Aminotran_1_2 family which is described as Aminotransferase class I and II (PF00155)","Mon Apr 23 14:50:30 2001","34539892","","","","","","1","","1","PG0012" "PG0012","15731","16498","768","ATGCTGCAGATCAGTCTCTGTCCTTCTCCTGTACTCTATCCATATTACAAGACGGAGCAAGAAGAGTACACGGTTGTTATCGTGGATATCTTCCGTGCCGGTACCACCATCACAACGGCACTGATGAACGGTGCCGTAGGCATCATCCCGATTGCAACCGTTGAGGAGGCGGAAATCTATGCCGGGAACGGGTTCCTCGTAGGAGGCGAGCGAGGAACGAAGCGATTGCCTTTCGCTCATTTCGGCAATGCTCCCGAAGAGTACACTCGCCAGGCGGTAGAGGGGAAACAGCTCGTACTATCGACGACCAACGGTACCCGCGCTGCCGACATAGTTGCCGGAGCCTTGCACGTTATTATCGGGGCTTTTATCAATCTGGAAGCTGTCGCTCGCTATTGTATCGCCAAGCAGAAGCCGGTCATGGTACTGGCTTCGGGCTGGCAAAACAGGATGAGTACGGAGGATTGTCTGTTCGCCGGTGCTTTGGCTGCTACGATTGTCCGGCTTGGAGAGGAGGTCATTTGCGAAGACGGAGCGTCAGTTTTCCAAGAACTCTGGGGTAACTACAATACGCATGAGAAGCTGATGGCCTACCTGAACGGTCGCGATCATTACGAACGCCTGCGCGCCAATAAATTGGAAAGAAGTGTTCCCTATTGCACTTCACTCAATCTCACAGAAATTGTTCCCGAACTGACCTTCAAAATTTCTGCCGCATCAACGGATTGCCCGGCTAACCGACTCTTCTTACCCGTCACTCCACCTTTC","5.20","-5.31","28042","MLQISLCPSPVLYPYYKTEQEEYTVVIVDIFRAGTTITTALMNGAVGIIPIATVEEAEIYAGNGFLVGGERGTKRLPFAHFGNAPEEYTRQAVEGKQLVLSTTNGTRAADIVAGALHVIIGAFINLEAVARYCIAKQKPVMVLASGWQNRMSTEDCLFAGALAATIVRLGEEVICEDGASVFQELWGNYNTHEKLMAYLNGRDHYERLRANKLERSVPYCTSLNLTEIVPELTFKISAASTDCPANRLFLPVTPPF","15731 16498","TIGR ID: PG0013","2-phosphosulfolactate phosphatase","Cytoplasm","A few significant hits in gapped BLAST to conserved proteins; e.g. residues 24-232 are 35% similar to a conserved hypothetical protein of Thermotoga maritima (AE001747), residues 26-248 are 30% similar to a conserved hypothetical protein of Deinococcus radiodurans (AE001985), residues 26-166 are 39% similar to a conserved protein of Methanobacterium thermoautotrophicum (AE000887).","
InterPro
IPR005238
Family
2-phosphosulfolactate phosphatase
PF04029\"[3-239]T2-ph_phosp
noIPR
unintegrated
unintegrated
G3DSA:3.90.1560.10\"[12-232]TG3DSA:3.90.1560.10


","BeTs to 5 clades of COG2045COG name: Uncharacterized ACRFunctional Class: SThe phylogenetic pattern of COG2045 is -mt---vc-b-----------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 26-230 are 32% similar to a (PROTEIN YITC CONSERVED MJ1140) protein domain (PD017220) which is seen in P73849_SYNY3.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Jul 25 12:41:14 2008","Mon Dec 4 10:39:50 MST 2000","Fri Jul 25 12:39:41 2008","","Fri Jul 25 12:39:41 2008","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Mon Mar 20 11:46:49 MST 2000","Fri Jul 25 12:39:41 2008","-55% similar to PDB:1VR0 Crystal structure of putative 2-phosphosulfolactate phosphatase (15026306) from Clostridium acetobutylicum at 2.6 A resolution (E_value = 4.8E_28);-56% similar to PDB:1NV8 N5-glutamine methyltransferase, HemK (E_value = 4.8E_28);-56% similar to PDB:1NV9 HemK, apo structure (E_value = 4.8E_28);-56% similar to PDB:1SG9 Crystal structure of hypothetical protein HEMK (E_value = 4.8E_28);-56% similar to PDB:1VQ1 Crystal structure of N5-glutamine methyltransferase, HemK(EC 2.1.1.-) (TM0488) from Thermotoga maritima at 2.80 A resolution (E_value = 4.8E_28);","","","Residues 3 to 239 (E-value = 1.6e-41) place PG0012 in the 2-ph_phosp family which is described as 2-phosphosulpholactate phosphatase (PF04029)","","34539893","","","","","","1","","1","PG0013" "PG0013","17087","18433","1347","ATGAAGAAAAGCGGCAATATCATCGTGGTCGATGATAACAAACATGTACTGACGGCTTTGAAATTGCTCCTGACGGGGAGTTTCGAGACCGTGACGCTCCTACCTTCCCCCAAGACACTGCTTTCCACGATCGTAGAGGTGCATCCGGATGTACTCCTGCTGGATATGAATTTTTCTACCGGCATCAATACGGGTAATGAAGGATTATATTGGCTGGATCAGGTCCGTAGCCGTTTCCCTGACCTCCCTGTGGTACTCTTTACCGCTTATGCGGACATTCGTCTGGCAGTGGAAGCCTTGAAGCGTGGAGCAAGCGATTTCGTAGTCAAGCCGTGGAACAACACCGAGCTGTTGGAGTCGCTTCGCATGGCGATGAATAAGGCCGCAAGCACTCAAGTGACGGCTACACCTAAAGAAGGCGATTCGGTATTTCTCAGCAAAAGCAAGGCCATGTGTGAGGTGTTGGAGCTGGCTGGTCGTATCGGCGATACTGCAGCCCATGTCCTCATTACGGGTGAGAATGGTACCGGCAAGGGCGTTTTAGCCGAGTATATCCATGCCCGTTCTCCTCGTAGCCGGCAGCCGATGCTGACTGTGGATATGGGAGCTTTGAGCGAGACGCTGTTCGAGAGCGAACTGTTCGGCCATGTGAAAGGAGCCTTTACCGATGCCAAAAGCGATCGCGCCGGCAAGTTCGAGACGGCGTCCGGCGGCACGATCTTCATGGACGAGATTGGCAATCTGAGCCTTGCCTTGCAAGCCAAGTTGTTGGCTGTACTACAGCAAAAAGTGGTGACCCGTGTGGGCAGCAATACACCGATCCCTGTGGATGTTCGTGTCATCTCTGCCACGAATAGCGATTTGCCCCTCTCCGTGGCAGAAGGCCGGTTTCGAGAAGATTTGCTTTATCGTCTCAATACGATTCATATCGAGATGCCGCCGCTACGTCGTCGCAGGGAAGATATAGTGCCGATGGCCGTATTCTTCCTGCATCGTTATGCACGACAGTATGGAAAAGAGGTGCCGGAATTGACTCCCGAAGCAGAGGCCCTACTCTCCGATTATCCGTGGCCGGGCAATGTGCGTGAGCTTCAGCATTGCATAGAGAAGGCTGTGATCCTTAGCCGTAGCAGTAGCCTTTCTGCTGCGGATCTGTCGTTGCCGAAGTCGGTCGATGCACATCCGACTGCTACCGGTGTAGCAAGCACTCCTCAGACGTTGGATGAAATGGAAAAGACCGCTATCGAGCAAGCCTTGGCACGAAACGGCAGCAACCTTTCGAATGTGGCAAGGGAATTAGGCATCAGCCGCCAGACTCTGTATAATAAGATGAAACGCTACGGGCTG","7.00","0.00","49172","MKKSGNIIVVDDNKHVLTALKLLLTGSFETVTLLPSPKTLLSTIVEVHPDVLLLDMNFSTGINTGNEGLYWLDQVRSRFPDLPVVLFTAYADIRLAVEALKRGASDFVVKPWNNTELLESLRMAMNKAASTQVTATPKEGDSVFLSKSKAMCEVLELAGRIGDTAAHVLITGENGTGKGVLAEYIHARSPRSRQPMLTVDMGALSETLFESELFGHVKGAFTDAKSDRAGKFETASGGTIFMDEIGNLSLALQAKLLAVLQQKVVTRVGSNTPIPVDVRVISATNSDLPLSVAEGRFREDLLYRLNTIHIEMPPLRRRREDIVPMAVFFLHRYARQYGKEVPELTPEAEALLSDYPWPGNVRELQHCIEKAVILSRSSSLSAADLSLPKSVDAHPTATGVASTPQTLDEMEKTAIEQALARNGSNLSNVARELGISRQTLYNKMKRYGL","17087 18433","TIGR ID: PG0016","nitrogen assimilation regulatory protein NR-I (ntrC)","Cytoplasm","Numerous significant hits in gapped BLAST to transcriptional regulatory proteins related to nitrogen metabolism; e.g. residues 6-446 are 39% similar to the transcriptional regulatory protein HYDG of Escherichia coli (U00006). Residues 5-449 are 35% similar to FrgC of Myxococcus xanthus (AF204400), residues 6-449 are 35% similar to the transcriptional regulator (NtrC family) of Aquifex aeolicus (AE000724).This sequence is similar to BT0690.","
InterPro
IPR001789
Domain
Response regulator receiver
PD000039\"[6-125]TResponse_reg
PF00072\"[5-122]TResponse_reg
SM00448\"[5-121]TREC
PS50110\"[6-125]TRESPONSE_REGULATORY
InterPro
IPR002078
Domain
RNA polymerase sigma factor 54, interaction
PF00158\"[144-365]TSigma54_activat
PS00676\"[230-245]TSIGMA54_INTERACT_2
PS00688\"[357-366]TSIGMA54_INTERACT_3
PS50045\"[144-373]TSIGMA54_INTERACT_4
InterPro
IPR002197
Domain
Helix-turn-helix, Fis-type
PR01590\"[413-430]T\"[430-449]THTHFIS
PF02954\"[407-447]THTH_8
InterPro
IPR003593
Domain
AAA+ ATPase, core
SM00382\"[164-307]TAAA
InterPro
IPR009057
Domain
Homeodomain-like
SSF46689\"[357-449]THomeodomain_like
InterPro
IPR011006
Domain
CheY-like
SSF52172\"[2-189]TCheY_like
noIPR
unintegrated
unintegrated
G3DSA:1.10.1680.10\"[407-449]TG3DSA:1.10.1680.10
G3DSA:1.10.8.60\"[317-392]TG3DSA:1.10.8.60
G3DSA:3.40.50.2300\"[7-129]TG3DSA:3.40.50.2300
G3DSA:3.40.50.300\"[144-316]TG3DSA:3.40.50.300
PTHR23283\"[6-130]TPTHR23283
SSF52540\"[143-385]TSSF52540


","BeTs to 7 clades of COG2204COG name: AAA superfamily ATPases with N-terminal receiver domainFunctional Class: TThe phylogenetic pattern of COG2204 is -----Q--E---uj--olinxNumber of proteins in this genome belonging to this COG is 2","***** IPB002078 (Sigma-54 transcription factor family) with a combined E-value of 1.6e-61. IPB002078A 168-202 IPB002078B 221-270 IPB002078C 295-322 IPB002078D 357-366","Residues 7-117 are 32% similar to a (PROTEIN SENSORY TRANSDUCTION) protein domain (PD000039) which is seen in ATOC_ECOLI.Residues 145-372 are 27% similar to a (NITROGEN ASSIMILATION REGULATORY PROTEIN) protein domain (PD082887) which is seen in P74210_SYNY3.Residues 145-373 are 48% similar to a (PROTEIN ATP-BINDING PROTEASE SUBUNIT REGULATORY HOMOLOG) protein domain (PD000092) which is seen in HYDG_ECOLI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Thu Dec 4 10:35:47 2003","Mon Dec 4 10:58:31 MST 2000","Wed Dec 3 08:54:08 2003","Tue Jan 2 16:04:52 MST 2001","Wed Mar 28 14:49:38 MST 2001","Wed Mar 28 14:49:38 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1-449 are 42% similar to PG0675, two-component sensor system regulatory subunit. Residues 128-386 and 397-449 are 40% and 45% similar respectively to PG0136, a nitrogen assimilation regulatory protein.","Mon Apr 2 15:58:12 MDT 2001","Wed Mar 28 14:49:38 MST 2001","-57% similar to PDB:1NY5 Crystal structure of sigm54 activator (AAA+ ATPase) in the inactive state (E_value = 1.2E_65);-60% similar to PDB:1OJL CRYSTAL STRUCTURE OF A SIGMA54-ACTIVATOR SUGGESTS THE MECHANISM FOR THE CONFORMATIONAL SWITCH NECESSARY FOR SIGMA54 BINDING (E_value = 4.3E_63);-64% similar to PDB:1NY6 Crystal structure of sigm54 activator (AAA+ ATPase) in the active state (E_value = 1.6E_54);-58% similar to PDB:2BJW PSPF AAA DOMAIN (E_value = 1.4E_42);-58% similar to PDB:2C96 STRUCTURAL BASIS OF THE NUCLEOTIDE DRIVEN CONFORMATIONAL CHANGES IN THE AAA DOMAIN OF TRANSCRIPTION ACTIVATOR PSPF (E_value = 1.4E_42);","","","Residues 5 to 129 (E-value = 2e-18) place PG0013 in the Response_reg family which is described as Response regulator receiver domain (PF00072)Residues 145 to 365 (E-value = 2.8e-112) place PG0013 in the Sigma54_activat family which is described as Sigma-54 interaction domain (PF00158)Residues 407 to 447 (E-value = 3.7e-16) place PG0013 in the HTH_8 family which is described as Bacterial regulatory protein, Fis family (PF02954)","Wed Dec 3 08:54:08 2003","34539894","","","","","","1","","1","PG0016" "PG0014","18447","19781","1335","ATGGGAAGACGGAAGACCGGCAGTTTCGGCTTGCATCTGTTATTTACCATCGTCATGGCGGTGGTGGGTACTTGGTCGGCAGCTGCAGGACATTATGCCATCACTGTTTTTGCAGCCGGACTCGTTATCTTTTCCGCCTTGCGGTTGCGTTTACTTTATCGGCGCCATCTTCAAGATCTTTCCCTGCTCTTGAATGCTATCGAGAATGGCGATTATTCCGTGCGCTTTTCCGAAATGGGAGGCAATGTCTCGCATCGAACATTCAACCGCACGCTTAATCGTATCAAGGAGATCCTCAGCCGTTCTCGTGATGAGGCTATAGCCGGCGAGCAGTTTCTCGTACATGTATTGGAACAGATTCCTGTCGGCATCATGATGGTTGCTCCGGAAGGATATGTCTATTCTACCAATACAGTGCTGTTGCGCCTCCTCGGTTTACCCGTTATCACACACCTCGATCAGCTCAGACGTGTGTCGCCGGACATGCCTCGACTGTTTCGTTCGGCGGCTACCGATTCAGGTATTCATATCAAGCTTACTACGGAGCGGGAAGAGCAGGAGGTGAGCCTCCGCTTCTCTTCGTTCCGCATCAGGGGGAAGATATACCATATATATACGCTGTCGAATATCGGCAAGGAGCTTGACGCTCGCGAGACAGAGTCGTGGATTCGGCTCATTCGGGTGATGACGCACGAGATCATGAACTCGATAGCCCCCATTACTTCGATATGCGATACCCTCTTGGACAATTTGCAAAGCTCTGCGGACGAGGAGATGCTGTCTACCGGATTGGATACCATTCGTAGTACCGGAGTGGGGCTGTTATCCTTTGTACAGGACTACCGTAAGTTTACGGCAGTTCCTCCTCCCGAGAAGGAGGACATTGCTTTACATGCTTTTCTTTCGGGGATATTGCGCCTGCAAGAAGAGCTTCTGTCCTCCAACGATATAAAGGTGGATATTGAAGAAATACCCGTGGAGCTGACTGTCCCGGCCGACCGCCGGCAATTGACTTCGGTACTGATAAACCTCGTCAAAAATGCTGCCGAGGCGGAATATCCTGCCGATACGGAGAAACGACTTTTGCGTATTCGTGTCGAGGAACGTCTCGATTCGTTGGATGAACACAGACTACTCCTTCATGTGGAGAACAATGGCACTCCTATTCCTCAAGAGGTGTTCGACAATATGTTTGTTCCTTTCTATACGACCAAAACCGGAGGTAGCGGCATCGGTCTGAGCCTTTCCCGTTATATCATTCGTCTGCATGGGGGAAATTTGCTTGCGAGGCGTACAGCCGATGGTTTCACCTCTTTCGTTATTGAACTGCCGCTC","6.70","-1.88","50052","MGRRKTGSFGLHLLFTIVMAVVGTWSAAAGHYAITVFAAGLVIFSALRLRLLYRRHLQDLSLLLNAIENGDYSVRFSEMGGNVSHRTFNRTLNRIKEILSRSRDEAIAGEQFLVHVLEQIPVGIMMVAPEGYVYSTNTVLLRLLGLPVITHLDQLRRVSPDMPRLFRSAATDSGIHIKLTTEREEQEVSLRFSSFRIRGKIYHIYTLSNIGKELDARETESWIRLIRVMTHEIMNSIAPITSICDTLLDNLQSSADEEMLSTGLDTIRSTGVGLLSFVQDYRKFTAVPPPEKEDIALHAFLSGILRLQEELLSSNDIKVDIEEIPVELTVPADRRQLTSVLINLVKNAAEAEYPADTEKRLLRIRVEERLDSLDEHRLLLHVENNGTPIPQEVFDNMFVPFYTTKTGGSGIGLSLSRYIIRLHGGNLLARRTADGFTSFVIELPL","18447 19781","TIGR ID: PG0017","two-component sensor histidine kinase","Inner membrane, Cytoplasm","Numerous significiant hits in gapped BLAST to histidine kinase sensor proteins; e.g. residues 66-435 are 26% similar to the nitrogen regulation protein NtrY of Neisseria meningitidis (AE002370), residues 116-441 are 27% similar to the 2-component regulatory system-sensor histidine kinase in Chlamydia trachomatis (AE001320), residues 76-444 are 26% similar to the sensor histidine kinase in Thermotoga maritima (AE001790).","
InterPro
IPR003594
Domain
ATP-binding region, ATPase-like
G3DSA:3.30.565.10\"[288-445]TATP_bd_ATPase
PF02518\"[332-445]THATPase_c
SM00387\"[332-445]THATPase_c
SSF55874\"[292-444]TATP_bd_ATPase
InterPro
IPR003661
Domain
Histidine kinase A, N-terminal
SM00388\"[221-290]THisKA
InterPro
IPR004358
Domain
Histidine kinase related protein, C-terminal
PR00344\"[378-392]T\"[396-406]T\"[407-425]T\"[431-444]TBCTRLSENSOR
InterPro
IPR005467
Domain
Histidine kinase
PS50109\"[228-445]THIS_KIN
noIPR
unintegrated
unintegrated
PTHR23283\"[115-445]TPTHR23283
PTHR23283:SF24\"[115-445]TPTHR23283:SF24
SSF55785\"[109-204]TSSF55785


","BeTs to 12 clades of COG0642COG name: Sensory transduction histidine kinasesFunctional Class: TThe phylogenetic pattern of COG0642 is AMT-YQVCEBRHUJ--O-inXNumber of proteins in this genome belonging to this COG is 6","No significant hit to the Blocks database.","Residues 314-444 are 35% similar to a (KINASE PROTEIN SENSORY TRANSDUCTION HISTIDINE SENSOR) protein domain (PD000064) which is seen in Q50903_MYXXA.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Mon Dec 4 11:00:28 MST 2000","Mon Dec 4 11:20:55 MST 2000","Tue Jan 2 16:06:16 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 64-444 are 25% similar to PG0674 and residues 213-444 are 22% similar to PG0045.","Mon Dec 4 11:20:55 MST 2000","","-46% similar to PDB:2C2A STRUCTURE OF THE ENTIRE CYTOPLASMIC PORTION OF A SENSOR HISTIDINE KINASE PROTEIN (E_value = 2.9E_11);-54% similar to PDB:1R62 Crystal structure of the C-terminal Domain of the Two-Component System Transmitter Protein NRII (NtrB) (E_value = 7.1E_10);","","","Residues 332 to 445 (E-value = 1.6e-21) place PG0014 in the HATPase_c family which is described as Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (PF02518)","","34539895","","","","","","1","","1","PG0017" "PG0015","19788","22031","2244","ATGAGAAAACCGATCGTCCGCTTTTTGCTATCGTTCTTTTGGCTTCTCGGAGTCTGCGCTTCTCATATGGTGGGGCAGTCATTACCTTCTGTATCGAAGGAAATACGGGAGCTGAGCAATAGAACGGAGCAGCAGACCTCCCTGTCTGACAGAAAAGAATCCGAAGCTTTTGCCTTGGAAACGGTCAGAATGATTTCCGACAGAACGCTTTACCTCTTCCGTTTGGCTGAAGGCCGTAGTTGGGAGGCTGATGTTCGAGGTCGATCGTGGGCTTCTCGTGTGCTGCCGATAGTGCATCGGCTCAAACACGGTGGTATTCCGTGGAAGCAGTATCTCTCGTCGGATTCTTTGTGTATGGAAGCTCGGCTATATGGAAAATACGACTCGGTAACCGGGGCATATAGAAGGGGTGTTGTTTCTTTTCGATCGGATATTCCTCAGCGAAACAAAGTTGATGACCTTACGGCTTTGGCTCTGTTGGGAGAGAATGTATATGCCGAAGAGTTCGATTTTGGCAACCGGCAAATTTTTCCCAATCCTATTCGACGAGAGGCCGAAGCATTTTATACCTATCGTTTGGATAGCCTGTACGAAAAAGACGGCATAACATACCGTCGTATCGCATTTCGTGGATTGAGCGGTCTGAATCACGGGACGGTAACGATAGATGCCACACATGGACAGCTTGCGATATTGGAAATGCGAGTCATGATGAAAGGGGTGATCACAGAATCCTATAGGGTCGAATTGGGAGAAGTAGAACCCGGTCTTTTCCTCCCGATCGGACTTTCTGTCGTCATCGACCGCAATCGTCTTTGGGCTTCGCTCCATAATGGCTATTCTGCTTCAATCTCATATCCAGGAGAGCAGCTCGATAAGACCGTGCTCCCCGTCTATACGCCTACGGATAGCAGTCGCTACCGCTTGCCGGACGAATTGCCGGTCGCTCCTGTTTGGGCTGTTCGCAGCAGCTTTGGGAGGGAGGATAGCTCGACGTATTGGAAAAATGTGGTTGTCGGTCGAGATCATACCCTGCATCAGCATGTACCTTGGCATCGCGCATTGGCTTGGGGACACAAGTATCGGATCGGTGAGCGTTGGCGATTAGGCAATGAGGGATTGGTGTGGGCTTTGTTCTATTATAATTATGCCGATCATCTTTGGCTGGGGCAGTCTCTGACGGCTATTTACGATATGGCTCCCGGAATCCGTTGGGAGATAAAGCCCGGCCTTTATTATGTTACCAAACGACGCAAAGCCGTTTGGACTCTCGACAGCAAACTGTACTATTCTCCTCCGCAAAGAGGGCTTTTGCAATTATCCGCAGGACATCGCTCTTTCGATTTGTACAGCACGCGCGAAAGAATAGACCAACTGACCGATCTGATGATGGAGCTGCTCAACGGACAAGGCCCGACAACTCGCTACGATGATAAATTTGTCCGTCTGACCAATAGTATCGACCTATTGCCCAAACTCAATGTGGAGACAAGCGTGATGCTGGCCGAGCGCAATCCTTTGCCGCATGGAGAGACGTGGAGTCTCTTCGGTGGCAGTATTACCGATATTCTGAATATCAGCAATGCCGATCCCGATCTTCCTCGCATAGTTCCTCATCACCGATTGCTGGAAGTACGAGCTAAGATGACATTCAATCCGCGTCCTTATTACCGTTATACGGCGGATGGATTTCTCATTCGTGAGGGTGAGGGCATACGTGCTCCGCTCCTTTCTCTCTCTTATCGCGGAGCTTTCGGGATGGGGCGTAAGTCCGATGCACGTTTCCACCACCTCGATTTGAGCATACAGCAGCGGCTTGTCTTTTCACCGGCATCGTCACTGTTCTATCAATTGAATGTCGGAGGTTATTTCGATCGGTCGGTTATCTATCCGAGCGAGTACTTTTTTCTGAAAGGGGGTAATGCTTTTTGGCGATTCGGCGATAGCATGGAAGCTGCTTTCCAGACACTGCCTCCCTATACGGCTACAGCCGACAAACACCTTATCCTTCAAACCAGCTACCGAGCTTCGCGCCTGCTGGTCAATTTCCTGCCTTTCGTTTTCTTAAAGACCAACGACGAGGCCTTACATTTCAAAGCCCGGTGGGATATGGTATCGAGAAAACCCTATCTGGAGATGGGTTATTCAGAGAGTATCGGTACGCTGATGCAAGTCGGAGTATTCTATGGTGGCTACAATTTCTTTTATGAAAGAGGAGTTGCCATCCGATTTACATTCAACATG","10.20","18.78","86179","MRKPIVRFLLSFFWLLGVCASHMVGQSLPSVSKEIRELSNRTEQQTSLSDRKESEAFALETVRMISDRTLYLFRLAEGRSWEADVRGRSWASRVLPIVHRLKHGGIPWKQYLSSDSLCMEARLYGKYDSVTGAYRRGVVSFRSDIPQRNKVDDLTALALLGENVYAEEFDFGNRQIFPNPIRREAEAFYTYRLDSLYEKDGITYRRIAFRGLSGLNHGTVTIDATHGQLAILEMRVMMKGVITESYRVELGEVEPGLFLPIGLSVVIDRNRLWASLHNGYSASISYPGEQLDKTVLPVYTPTDSSRYRLPDELPVAPVWAVRSSFGREDSSTYWKNVVVGRDHTLHQHVPWHRALAWGHKYRIGERWRLGNEGLVWALFYYNYADHLWLGQSLTAIYDMAPGIRWEIKPGLYYVTKRRKAVWTLDSKLYYSPPQRGLLQLSAGHRSFDLYSTRERIDQLTDLMMELLNGQGPTTRYDDKFVRLTNSIDLLPKLNVETSVMLAERNPLPHGETWSLFGGSITDILNISNADPDLPRIVPHHRLLEVRAKMTFNPRPYYRYTADGFLIREGEGIRAPLLSLSYRGAFGMGRKSDARFHHLDLSIQQRLVFSPASSLFYQLNVGGYFDRSVIYPSEYFFLKGGNAFWRFGDSMEAAFQTLPPYTATADKHLILQTSYRASRLLVNFLPFVFLKTNDEALHFKARWDMVSRKPYLEMGYSESIGTLMQVGVFYGGYNFFYERGVAIRFTFNM","19788 22031","TIGR ID: PG0018","conserved hypothetical protein","Outer membrane, Cytoplasm","No significant hits in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-20]?signal-peptide
tmhmm\"[5-25]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Mon Feb 28 10:16:39 2005","Mon Mar 20 16:35:57 MST 2000","Mon Nov 13 13:05:32 MST 2000","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 134-747 are 30% similar to PG0981, a hypothetical protein.","Mon Dec 4 11:26:18 MST 2000","Mon Feb 28 10:16:39 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34539896","","","","","","1","","1","PG0018" "PG0016","22180","23334","1155","ATGAGTACAAATATAAGCCTATTCGCCCAAGTTATCCGCCTGTTGCCTCGTCCGTTGATTAAGAAGCTCTCTACAGAGTTTCAAGTAGACAAACATAGCAAACACTTCACAGGGTGGCAACACTTAGTGAGCATGATTTTCAGCCAATTCTCAAGCTGTATCTCCTTACGCGAGATTAGTAATGGCTTACGCTCAGCCACAGGTAACCTCAACCACTTAGGCATATGCACAGCACCCTCTAAGTCCAATTTATCTTATCAGAACGAGCACCGTACCTCAGACTTCTTTCGAGCGTGCTATTATGCCTTGCTAGATTATTTCGGACAGCAGGGTATGGGGCAAGGGCGTAAGTTTCGTTTTAAGCAACCCGTCAAGCTTCTAGACTCTACGACCATTACCCTTTGCCTTGCCCTATACGATTGGGCTAAATACACACATACGAAGGGAGCTGTTAAGCTTCATACACTCTTAGACTTCAAGACTCTGTTGCCTGAATATGTGCATATTAGTGATGGTAAAGGACATGATGGCAAGATGGCCAATTCTATTCCTATCCCAGCAGGAAGTATCGTCGTGGCTGACCGTGGCTATGCTGATACCGCCTTGCTCAATAGTTGGGACAGCACCCAAGTGAGTTTTGTAGTACGCCACCCAAGGTCCTTAAAATATGAGGTTATTCAAGAGTTGGAACTCCCAGAACATGGGCATCAGCAAATACTAGTAGATCAGAGAGTACGGCTCACAGGCGTTCAGACGCAAGGCAAGTACACTAAGCCATTGAGGCATATTGCCCTCTACAACGAGCAACATGGCGATGTCGTTGAGTTATTGACCAACATAGACACCCTTGCAGCAAGTAGTATAGCCTTGCTGTATCGTTCAAGATGGCTTATCGAGATTTTCTTTCGGAATTTGAAGCAACGCCTCAGCATGAAGGCCTTTCTTGGAACAACGCGCAATGCCGTAGAGGTGCAAATATGGACGGCTCTTATTACAATGCTTTTGATGGTCTATCTCAAGAGTATCGCCAAATATCGGTGGTGCTTGTCTAATCTTGTCTCTTCGCTAAGAATCAACACATTTACCAAGATGGATCTGATGCAATGGCTTAATGAGCCGTTTACGCCTCCGCCAGAGCCCGAAAATCAGCTCTTT","10.20","16.13","44057","MSTNISLFAQVIRLLPRPLIKKLSTEFQVDKHSKHFTGWQHLVSMIFSQFSSCISLREISNGLRSATGNLNHLGICTAPSKSNLSYQNEHRTSDFFRACYYALLDYFGQQGMGQGRKFRFKQPVKLLDSTTITLCLALYDWAKYTHTKGAVKLHTLLDFKTLLPEYVHISDGKGHDGKMANSIPIPAGSIVVADRGYADTALLNSWDSTQVSFVVRHPRSLKYEVIQELELPEHGHQQILVDQRVRLTGVQTQGKYTKPLRHIALYNEQHGDVVELLTNIDTLAASSIALLYRSRWLIEIFFRNLKQRLSMKAFLGTTRNAVEVQIWTALITMLLMVYLKSIAKYRWCLSNLVSSLRINTFTKMDLMQWLNEPFTPPPEPENQLF","22180 23334","Member of the IS5 family of IS elements.TIGR ID: PG0019. Reported by Chen et al., 2004, to be highly divergent in ATCC 33277.","ISPg4 transposase","Inner membrane, Cytoplasm","PG0016 is equivalent to the previously sequenced AF148127 in GenBANK. Numerous significant hits in gapped BLAST to transposase proteins; e.g.residues 20-337 are 27% similar to the IS4Bsu1 transposase in Bacillus subtilis (AB031551).","
InterPro
IPR002559
Domain
Transposase, IS4-like
PF01609\"[124-335]TTransposase_11
InterPro
IPR012337
Domain
Polynucleotidyl transferase, Ribonuclease H fold
SSF53098\"[185-350]TRNaseH_fold


","No hit to the COGs database.","***** PF01609 (Transposase (IS4 family)) with a combined E-value of 1.4e-08. PF01609B 288-309","Residues 271-336 are 45% similar to a (TRANSPOSASE PUTATIVE PLASMID ELEMENT) protein domain (PD003301) which is seen in Y4ZB_RHISN.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Tue Feb 22 13:38:38 2005","Fri Feb 9 08:44:16 MST 2001","Fri Feb 9 08:44:16 MST 2001","Mon Dec 4 11:32:48 MST 2000","Tue Feb 22 13:38:38 2005","Tue Feb 22 13:38:38 2005","yes","Fri Feb 20 15:41:32 MST 1998","PG0016 is paralogously related to PG1461, PG1114, PG1920, PG0043, PG1447, PG0868, PG0445, PG0205, PG0162, all predicted ISPg4 elements.","Fri Feb 9 08:44:16 MST 2001","Tue Feb 22 13:38:38 2005","No significant hits to the PDB database (E-value < E-10).","","","Residues 124 to 335 (E-value = 6.9e-43) place PG0016 in the Transposase_11 family which is described as Transposase DDE domain (PF01609)","","34539897","","Sawada,K., Kokeguchi,S., Hongyo,H., Sawada,S., Miyamoto,M.,Maeda,H., Nishimura,F., Takashiba,S. and Murayama,Y.Identification by subtractive hybridization of a novel insertionsequence specific for virulent strains of porphyromonas gingivalis. Infect. Immun. 67 (11), 5621-5625 (1999)Chen T, Hosogi Y, Nishikawa K, Abbey K, Fleischmann RD, Walling J, Duncan MJ.Comparative whole-genome analysis of virulent and avirulent strains of Porphyromonas gingivalis.J Bacteriol. 2004 Aug;186(16):5473-9.PMID: 15292149","Nagai,T., Phan Tran,L.S., Inatsu,Y. and Itoh,Y.A new IS4 family insertion sequence, IS4Bsu1, responsible forgenetic instability of poly-gamma-glutamic acid production inbacillus subtilis. J. Bacteriol. 182 (9), 2387-2392 (2000)","Tue Feb 22 13:38:38 2005","Fri Feb 9 08:46:47 MST 2001","1","","1","PG0019" "PG0017","23522","24223","702","ATGAAGTACAAAAAACTGCTTTTCGATCTTATTGACTACCTCGATGCATTTGAAAGTTTGCACGACGGAGGCTCGCACGAACCCGAAATAAAAGACTTTGCCGACTTTTTAAGTTGGCGCTGTGGCAAAAAGAAGAAACAGGAGGAAGAAGTTGTCTCTGTCACCCGGGAACGAGCAGCAGGAGCTAAGAACATAGCGCGAGGGGTCAGCCTCCTCCATCGTTATTCCCGTTTTTATATCAAGAAAGCTCTGACGGAATCTCCATTACAGACCGAAGACGAATATACCTATCTGGTCAGCCTGATGAACGGTGAGAGCATGACCAAGACAGAGCTGAACAACCTCAATGCCATGGAAAAAACATCCGGCGCAGAAGTCATGCGTCGTCTGCTGAAAGCTAATCTGATCGAGCAGAGACCGGATGAGGAGGATCGCAGAAGTATGCGTGTCTCCATTACCCCTGAGGGAAGAAAGGTACTGGTCAATCTCTTTCCCAACCTGCGCCTTTGTGCCGAGACACTCGTTTCCGCCCTGTCGGACGAACAGCTGACCGCCTTCGATCATCTGCTCTGGTTGCTATGCGAATGCCACAACGAGATGTTCACCGGCAAACATGATGCCGAGTTGACGGATTTGCATGCGGAGACCTGTGGATTGAAGCAATCGGCAGGGGGAGCTTTGTCCAAGCGACTATACCGCCGC","6.90","-0.53","26805","MKYKKLLFDLIDYLDAFESLHDGGSHEPEIKDFADFLSWRCGKKKKQEEEVVSVTRERAAGAKNIARGVSLLHRYSRFYIKKALTESPLQTEDEYTYLVSLMNGESMTKTELNNLNAMEKTSGAEVMRRLLKANLIEQRPDEEDRRSMRVSITPEGRKVLVNLFPNLRLCAETLVSALSDEQLTAFDHLLWLLCECHNEMFTGKHDAELTDLHAETCGLKQSAGGALSKRLYRR","23522 24223","TIGR ID: PG0020","possible transcriptional regulator, MarR family","Cytoplasm","Two weak hits in gapped BLAST to transcriptional regulator proteins: residues 105-189 are 34% similar to a transcriptional regulator, MarR family, in Deinococcus radiodurans (AE001965); residues 98-195 are 30% similar to a putative marR-family transcriptonal regulator of Streptomyces coelicolor A3(2) (AL133423).","
InterPro
IPR000835
Family
Bacterial regulatory protein, MarR
PF01047\"[90-159]TMarR
SM00347\"[82-183]THTH_MARR
PS50995\"[65-195]THTH_MARR_2
InterPro
IPR011991
Domain
Winged helix repressor DNA-binding
G3DSA:1.10.10.10\"[90-163]TWing_hlx_DNA_bd
noIPR
unintegrated
unintegrated
SSF46785\"[63-207]TSSF46785


","BeTs to 5 clades of COG1846COG name: Transcriptional regulators, MarR/EmrR familyFunctional Class: KThe phylogenetic pattern of COG1846 is amtk--V-EBR----------Number of proteins in this genome belonging to this COG is 2","***** IPB000835 (Bacterial regulatory protein, MarR family) with a combined E-value of 4.3e-08. IPB000835 123-156","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Mon Dec 4 13:32:11 MST 2000","Mon Dec 4 13:32:11 MST 2000","Tue Apr 24 12:51:54 MDT 2001","Tue Apr 24 12:51:54 MDT 2001","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Mon Mar 20 16:52:37 MST 2000","Tue Apr 24 12:51:54 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 90 to 193 (E-value = 4.1e-09) place PG0017 in the MarR family which is described as MarR family (PF01047)","Tue Apr 24 12:51:54 MDT 2001","34539898","","","","","","1","","","PG0020" "PG0018","25213","24215","999","ATGAAAATAGGTGCCATAGACCTCGGGGTAGAGCCTTTGCTACTCGCTCCGATGGAGGATGTGACGGATGTAGCCTTCCGGATCATGTGCAAGCAGTTCGGTGCCGATCTGGTTTATTCCGAATTTCTCAGTGCCGATGCCCTGATTCGTCAAGTAGCCGGCACATTCCGAAAAATGGCCATAGATGAATCGGAACGCCCGATGGCTGTACAGATATACGGACGGGATGTGGCTTCGATGGTAGAGGCTGCCCGACTATGCGAATCGGCCGGTCCGAATCTGATCGATCTGAACTTCGGATGTCCGGTCAAACGGGTAGCAGGGAAAGGTGCCGGCAGCGGAATGCTCCGCAATATCCCACTTATGATAGAGATAACGCGTGAGGTAGTCAAGGCGGTGAAGTTGCCGGTAACGGTGAAAACGCGGCTTGGCTGGGACAATGACAGCAAGATCATAGTAGACCTGGCCGAACAGCTCCAAGACTGTGGCATTGCAGCCCTGACCATACATGGTCGTACACGCGCCCAAATGTACACGGGGACGGCTGACTGGACGCTGATCGGAGAAGTGAAGAACAATCCGAGAATGCAAATCCCCATTATCGGAAACGGAGACGTGACCACTCCGCAAGAAGCCCGACGAGCCTTTGACGTATATGGCGTGGATGCCGTAATGGTAGGCAGGGCTTCTATCGGACAACCATGGATATTCGAGGATATGAAGCATTTCCTTCGTACGGGAGAAACGTTGCCTTCGCGTCCGTTTTCCTATTATATGGACATACTCCGCCGTCAGACGTTGAACAACATCCGAAAACTGGACGAACGGCGAGGTATCCTCCATACACGCAGACATATTGCAGCCAGCCCCATATTCAAAGGGATTCCAAACTTCAAACCCATGCGCGTGGCCATGCTTCGTGCCACGACACAGGAGGAGCTTTTCGCTCTTATGGACGAGGTGGAGAAGATGATAGGATCGGCTGATTCAGCGGCGGTA","8.20","2.79","36928","MKIGAIDLGVEPLLLAPMEDVTDVAFRIMCKQFGADLVYSEFLSADALIRQVAGTFRKMAIDESERPMAVQIYGRDVASMVEAARLCESAGPNLIDLNFGCPVKRVAGKGAGSGMLRNIPLMIEITREVVKAVKLPVTVKTRLGWDNDSKIIVDLAEQLQDCGIAALTIHGRTRAQMYTGTADWTLIGEVKNNPRMQIPIIGNGDVTTPQEARRAFDVYGVDAVMVGRASIGQPWIFEDMKHFLRTGETLPSRPFSYYMDILRRQTLNNIRKLDERRGILHTRRHIAASPIFKGIPNFKPMRVAMLRATTQEELFALMDEVEKMIGSADSAAV","25267 24215","TIGR ID: PG0021","conserved hypothetical protein (NIFR3-like protein)","Cytoplasm, Inner membrane","Numerous significant hits in gapped BLAST to yhdG homologs; e.g. residues 1-287 are 40% similar to the yhdG homolog in Proteus vulgaris (AF040379), residues 12-286 are 40% similar to the nifR3 protein in Neisseria meningitidis (AE002491), and residues 1-287 are 40% similar to the yhdG homolog in Serratia marcescens (AF040378).This sequence is similar to BT3073.","
InterPro
IPR001269
Family
Dihydrouridine synthase, DuS
PIRSF006621\"[1-332]TDus
PF01207\"[14-322]TDus
PS01136\"[95-113]TUPF0034
InterPro
IPR004652
Family
Dihydrouridine synthase TIM-barrel protein nifR3
TIGR00737\"[3-326]TnifR3_yhdG
InterPro
IPR013785
Domain
Aldolase-type TIM barrel
G3DSA:3.20.20.70\"[12-252]TAldolase_TIM
noIPR
unintegrated
unintegrated
PTHR11082\"[40-331]TPTHR11082
PTHR11082:SF9\"[40-331]TPTHR11082:SF9
SSF51395\"[11-326]TSSF51395


","BeTs to 12 clades of COG0042COG name: Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 familyFunctional Class: RThe phylogenetic pattern of COG0042 is amt-YqvCEBrHuj--OlinxNumber of proteins in this genome belonging to this COG is 1","***** IPB001269 (Uncharacterized protein family UPF0034) with a combined E-value of 9.6e-69. IPB001269A 16-29 IPB001269B 35-45 IPB001269C 84-116 IPB001269D 136-146 IPB001269E 163-187 IPB001269F 198-237","Residues 145-235 are 52% similar to a (PROTEIN OXIDOREDUCTASE FLAVOPROTEIN INTERGENIC REGION) protein domain (PD002067) which is seen in YACF_BACSU.Residues 135-237 are 31% similar to a (HYPOTHETICAL 48.1 KD PROTEIN) protein domain (PD113056) which is seen in YMI0_YEAST.Residues 135-263 are 31% similar to a (HYPOTHETICAL 69.8 KD PROTEIN) protein domain (PD100826) which is seen in YL01_YEAST.Residues 12-133 are 44% similar to a (PROTEIN INTERGENIC REGION PUTATIVE) protein domain (PD002197) which is seen in NIR3_AZOBR.","","Tue Jun 12 14:50:47 MDT 2001","","Tue Jun 12 14:50:47 MDT 2001","Tue Jun 12 14:50:47 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Tue Jun 12 14:50:47 MDT 2001","Tue Jun 12 14:50:47 MDT 2001","","","Fri Mar 9 14:42:21 MST 2001","Fri Dec 19 10:51:18 2003","Tue Jun 12 14:50:47 MDT 2001","Fri Dec 19 10:51:18 2003","Fri Dec 19 10:51:18 2003","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Mon Mar 20 16:57:31 MST 2000","Fri Mar 9 14:42:21 MST 2001","-56% similar to PDB:1VHN Crystal structure of a putative flavin oxidoreductase with flavin (E_value = 7.1E_41);","","","Residues 14 to 322 (E-value = 1e-102) place PG0018 in the Dus family which is described as Dihydrouridine synthase (Dus) (PF01207)","Fri Mar 9 14:42:21 MST 2001","34539899","","","","","","1","","","PG0021" "PG0019","26886","25213","1674","ATGATCGGATCATATTTCAGGCCGAAGCTGCTCGATGTTTTCCACGGGTACAACCGTGAGCGTTTCATGGCCGACCTCATGGCCGGCGTTATCGTCGGCATCGTAGCTTTACCCTTGGCCATTGCCTTCGGTATAGCCAGTGGTGTATCTCCGGAAACAGGTCTTATCACGGCCATTATAGGCGGTTTCATCGTATCGCTTCTGGGTGGTTCATCCGTCCAAATCGGTGGCCCGACAGGTGCTTTCATCGTTATCGTCTACGGCATCATTCATAAGTACGGCATCGAGGGTCTTACGATTGCCACGATCATAGCAGGTATCTTGCTTCTCGTAATGGGTGTTCTTCGTCTGGGCACGCTGATCAAGTTTATCCCCTACCCTATAGTAGTGGGATTCACGGCAGGGATCGCCCTCACGATCTTCTCTACCCAAATGAATGACCTCTTCGGCCTCGGTATTACGGATATGCCCGGTGATTTCCTTGGCAAATGGGGAGCTTATTTTACCAACTTCAAGTCAGTAAACCTTTGGGCTTTCGGGATGGGTCTGCTTAGTATTGTCATCATTATGCTGAGTCCGAGATTCACCAAGAAGATACCCGGTTCGCTCATTGCTATCATCTTGATGACCGTAGCAGCCTATTTACTTCGGTTGCAGGGTATCGGCGAGTTCGAAACCATCGGCGACCGCTTCACTATTTCCGCTCAACTGCCCAAACCAACGGGGGTAACACTCAGCCTCGAAACGATTCGCCAACTTTTTCCTCCGGCTTTTACCATCGCCCTGTTGGGAGCTATCGAATCTCTGCTGTCAGCCAGCGTAGCCGATGGTGTGATAGGGGAAAAGCACAACAGCAATACCGAGCTTATCGCTCAGGGTGCGGCCAATATAGTGGTTCCGTTCTTCGGTGGTATTCCCGTCACCGGAGCCATAGCGCGTACGATGACCAACATCAACAACGGCGGACGCTCTCCCATTGCAGGGATCATACACGCCTTCGTGTTACTGCTGATCCTGCTGTTCCTCGGGCCTCTGACGGCATACATCCCGATGGCTTGTTTGGCCGGAGTACTGATCATAGTATCCTACAATATGAGCGGATGGCGTTCGGTGGCCAATATCGGTCGCGGCCCTCGCAGCGATAGCCTCGTCATGCTGGTTACTTTCTTGCTTACCGTCATCCTCGACTTGACCGTTGCCATAGAGATAGGACTGCTTTTGGCCATCCTGCTCTTTATGAAGCGCGTTACGGAGAATACGCGTATCACCGTTGCCACAGGCAGGCTCGACCTGACACAAACCGGCGAGATCGCCCACCACGACGAAGTGCTCGACATTCCGAAGGGCGTAGAGGTATATGAAATCGAAGGGCCTTTCTTCTTTGGTATCGCGAACAGATTCGAAGAGATCATGAACACATTGGGCGACCATCCCGATGTTCGGATTATCAGAATGCGGCATGTGCCGTTTATGGATTCGACAGGGATGCACAATCTGGAAAACCTGATCAAAATGAGCCGGAAAGAAGGGGTCAGCATCGTCCTCTCCGGTGTGCGCAAGGACGTCCACGAAGAACTTGCCACTGCAGGCATCGTAGAGCTATTGGGAGAGGAAAACGTATGTGCCGATATTCAAGCGGCTCTGCGACAGGCACAAGCCATAGCCCAAGGAGCA","6.50","-2.66","59659","MIGSYFRPKLLDVFHGYNRERFMADLMAGVIVGIVALPLAIAFGIASGVSPETGLITAIIGGFIVSLLGGSSVQIGGPTGAFIVIVYGIIHKYGIEGLTIATIIAGILLLVMGVLRLGTLIKFIPYPIVVGFTAGIALTIFSTQMNDLFGLGITDMPGDFLGKWGAYFTNFKSVNLWAFGMGLLSIVIIMLSPRFTKKIPGSLIAIILMTVAAYLLRLQGIGEFETIGDRFTISAQLPKPTGVTLSLETIRQLFPPAFTIALLGAIESLLSASVADGVIGEKHNSNTELIAQGAANIVVPFFGGIPVTGAIARTMTNINNGGRSPIAGIIHAFVLLLILLFLGPLTAYIPMACLAGVLIIVSYNMSGWRSVANIGRGPRSDSLVMLVTFLLTVILDLTVAIEIGLLLAILLFMKRVTENTRITVATGRLDLTQTGEIAHHDEVLDIPKGVEVYEIEGPFFFGIANRFEEIMNTLGDHPDVRIIRMRHVPFMDSTGMHNLENLIKMSRKEGVSIVLSGVRKDVHEELATAGIVELLGEENVCADIQAALRQAQAIAQGA","26931 25213","In contrast to CT856, this protein has no predicted transmembrane spanning domains.TIGR ID: PG0022","sulfate transporter","Inner membrane, Cytoplasm","Numerous significant hits in gapped BLAST to hypothetical proteins and sulfate transporters; e.g. residues 6-554 are 40% similar to a sulfate transporter in Chlamydophila pneumoniae (AE001682), residues 8-554 are 40% similar to a sulfate transporter in Chlamydia trachomatis (AE001358), residues 14-539 are 40% similar to a hypothetical protein in Bacillus subtilis (Z94043).This protein is similar to CT856, a predicted sulphate transporter protein, and to BT3181.","
InterPro
IPR001902
Family
Sulphate anion transporter
TIGR00815\"[8-547]TsulP
InterPro
IPR002645
Domain
Sulfate transporter/antisigma-factor antagonist STAS
G3DSA:3.30.750.24\"[438-554]TSTAS
PF01740\"[441-547]TSTAS
PS50801\"[440-551]TSTAS
SSF52091\"[439-552]TSTAS
InterPro
IPR011547
Domain
Sulphate transporter
PF00916\"[112-416]TSulfate_transp
noIPR
unintegrated
unintegrated
PTHR11814\"[17-557]TPTHR11814
PTHR11814:SF6\"[17-557]TPTHR11814:SF6
SSF103473\"[98-200]TSSF103473


","BeTs to 8 clades of COG0659COG name: Sulfate permease and related transporters (MFS superfamily)Functional Class: PThe phylogenetic pattern of COG0659 is ----Yq-CeBR-uj----in-Number of proteins in this genome belonging to this COG is 1","***** IPB001902 (Sulfate transporter) with a combined E-value of 4.4e-38. IPB001902B 37-87 IPB001902C 100-151 IPB001902D 269-321***** PF01740 (SpoIIAA family) with a combined E-value of 1.1e-06. PF01740B 481-531","Residues 175-325 are 46% similar to a (SULFATE PROTEIN TRANSPORTER TRANSPORT) protein domain (PD001255) which is seen in O06984_BACSU.Residues 20-145 are 50% similar to a (SULFATE PROTEIN TRANSPORTER TRANSPORT) protein domain (PD001121) which is seen in O06984_BACSU.Residues 445-540 are 35% similar to a (PROTEIN SULFATE TRANSPORTER) protein domain (PD155176) which is seen in Q9Z6P5_BBBBB.","","Tue Jun 12 14:56:51 MDT 2001","","Tue Jun 12 14:56:51 MDT 2001","Tue Jun 12 14:56:51 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Tue Jun 12 14:56:51 MDT 2001","Tue Jun 12 14:56:51 MDT 2001","","Fri Dec 19 10:58:54 2003","Mon Apr 10 14:40:50 MDT 2000","Fri Dec 19 10:58:54 2003","Wed Mar 28 14:55:49 MST 2001","Fri Dec 19 10:58:54 2003","Fri Dec 19 10:58:54 2003","yes","Fri Feb 20 15:41:32 MST 1998","Residues 93-421 are 23% similar to PG0835, a conserved hypothetical protein (possible sulfate permease).","Tue Jun 12 15:02:46 MDT 2001","Tue Jul 13 14:09:37 2004","No significant hits to the PDB database (E-value < E-10).","","","Residues 23 to 403 (E-value = 4.2e-05) place PG0019 in the Xan_ur_permease family which is described as Permease family (PF00860)Residues 112 to 416 (E-value = 1.5e-83) place PG0019 in the Sulfate_transp family which is described as Sulfate transporter family (PF00916)Residues 441 to 547 (E-value = 1.3e-15) place PG0019 in the STAS family which is described as STAS domain (PF01740)","Fri Dec 19 10:58:54 2003","34539900","","","","","","1","","","PG0022" "PG0019.1","26921","27160","240","TTGCACGCCACAAAGGTAGGGATTTACTCACTGAGACAAAGCTTTTTACCCGATTCAGAGCGGAATGCCTACAGTCTGATCTTCGACATTTGCAGTCTGTTAGCTATATGTAGTCCGGAAGCAGTACTTCGTTTTTTTGATTCGATAATGCCGGATACAATCACCATCCCATCTGAAAATATTTCACGAAAATACAGACCAGAAAAGTTTTCAACAACGAAGAAGAGTTTGGAATCATTC","","","9118","LHATKVGIYSLRQSFLPDSERNAYSLIFDICSLLAICSPEAVLRFFDSIMPDTITIPSENISRKYRPEKFSTTKKSLESF","26921 27160","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No significant hits in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Apr 17 18:17:02 MDT 2000","","","","Mon Feb 26 16:48:30 MST 2001","","Mon Apr 24 13:05:27 MDT 2000","","Tue Dec 5 10:24:03 MST 2000","Tue Dec 5 10:24:03 MST 2000","Tue Dec 5 10:24:03 MST 2000","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Tue Dec 5 10:24:03 MST 2000","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG0020","27872","28525","654","ATGAAAACGATTGCGAACGAGTCTTTTCTTCTTGATACAAAAGTCCCCGAACCTACTCTGAGGCGTCTTCCCTGGTATTTGTCTTACGTCCAGCTTTTGCATGCGGATGGATGCGAGTCGGTGTCTTCCACGCGGATCGCTCGTGCCGTAGGAGTGGATGCTTCGCTCGTGGCCAAGGATCTCTCCTATGTATCGGTGGATGGGCGTACACGGGTAGGGTACCGGGTGGCGGACATGGTGGCTGTGCTGAACGACTTTCTGGGCTTTACGCACCACCACCGTGCTTTCCTCTTCGGGGTGGGAAGTCTGGGTGCTGCTTTGTTGCAGGACTCGGGTTTGCGCCACTTCGGGTTGGAGATTGCCGCCGGGTTCGATGTGAATCCGGATATTGTGGACACTAATATCAATGGCATCCCCGTTTACCATAAGAGCCGGGTTGCGGAGTTGTGCGCTCGAGAGCGTGTGGATATAGGTATTCTTACCGTTCCGATACGGGCGGCACAGTCGATGGCCGATGAGATGATAGCAGCAGGGATCAAGGCTATTTGGAATTTTACCCCTTGGCGCATCAGTGTACCCGAAGGCGTGGTCGTACAGAATACGTCGATGTATGCCCAGTTGGCTGTGATGTTCAATCGGATGAAATCGCTACCT","7.60","1.34","23916","MKTIANESFLLDTKVPEPTLRRLPWYLSYVQLLHADGCESVSSTRIARAVGVDASLVAKDLSYVSVDGRTRVGYRVADMVAVLNDFLGFTHHHRAFLFGVGSLGAALLQDSGLRHFGLEIAAGFDVNPDIVDTNINGIPVYHKSRVAELCARERVDIGILTVPIRAAQSMADEMIAAGIKAIWNFTPWRISVPEGVVVQNTSMYAQLAVMFNRMKSLP","27872 28525 [Shorter 25 109 53]","TIGR ID: PG0024","conserved hypothetical protein (possible DNA binding protein)","Cytoplasm","Numerous hits in gapped BLAST to conserved hypothetical proteins; e.g. residues 15-210 are 35% similar to a DNA-binding protein in Streptomyces coelicolor (AL079345), residues 13-207 are 34% similar to the ydiH protein in Bacillus subtilis (D88802), residues 13-218 are 33% similar to the YdiH in Bacillus halodurans (AB013375).","
InterPro
IPR003781
Domain
CoA-binding
PF02629\"[88-192]TCoA_binding
InterPro
IPR009718
Domain
Rex DNA-binding, C-terminal
PF06971\"[13-62]TPut_DNA-bind_N
InterPro
IPR011991
Domain
Winged helix repressor DNA-binding
G3DSA:1.10.10.10\"[13-85]TWing_hlx_DNA_bd
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.720\"[86-216]TG3DSA:3.40.50.720
SSF46785\"[16-89]TSSF46785
SSF51735\"[94-217]TSSF51735


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 13-207 are 34% similar to a (PROTEIN YDIH) protein domain (PD112016) which is seen in O05521_BACSU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Dec 5 10:29:22 MST 2000","Tue Dec 5 10:29:22 MST 2000","Tue Dec 5 10:29:22 MST 2000","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Mon Mar 20 17:08:22 MST 2000","","-49% similar to PDB:1XCB X-ray Structure of a Rex-Family Repressor/NADH Complex from Thermus Aquaticus (E_value = 9.6E_24);-49% similar to PDB:2DT5 Crystal Structure of TTHA1657 (AT-rich DNA-binding protein) from Thermus thermophilus HB8 (E_value = 1.6E_23);-35% similar to PDB:1DJ9 CRYSTAL STRUCTURE OF 8-AMINO-7-OXONANOATE SYNTHASE (OR 7-KETO-8AMINIPELARGONATE OR KAPA SYNTHASE) COMPLEXED WITH PLP AND THE PRODUCT 8(S)-AMINO-7-OXONANONOATE (OR KAPA). THE ENZYME OF BIOTIN BIOSYNTHETIC PATHWAY. (E_value = 1.6E_23);-35% similar to PDB:1DJE CRYSTAL STRUCTURE OF THE PLP-BOUND FORM OF 8-AMINO-7-OXONANOATE SYNTHASE (E_value = 1.6E_23);-48% similar to PDB:1Y81 Conserved hypothetical protein Pfu-723267-001 from Pyrococcus furiosus (E_value = 1.6E_23);","","","Residues 183 to 214 (E-value = 1.4e-12) place PG0020 in the Put_DNA-bind_C family which is described as Putative DNA-binding protein C-terminus (PF06971)","","34539901","","","","","","1","","","PG0024" "PG0021","28597","29253","657","ATGAAGATAATTGCTGTCGGCATGAACTATGGTGCGCATGTCAGCGAAATGCGACGTGCGGACATCCTTCCCGTTGCTCCCTGTCCGGATGGAGGGGGAGCCGATTTTTGTGTGGAGGAACCTGTGCTTTTCCTCAAGGCCGACTCCTTGTTGCGCGAAGGGCATCCCCTTTTCTATCCGGATTTTTCTCAGGAGATCCACTATGAGACGGAGCTGGTGGTTCGTATAGATCGTATCGGCAAGTGCATAGCCGAACGTTTTGCTCACCGCTATTACAGTGAGGTTACTGTCGGTATAGACTTCACGGCTCGTGACCTCCAGCGTCGTGCCAAAGCCAAGGGGTTGCCCTGGGCAACGGCCAAAGCTTTCGACAACTCCGCTGCCGTAGGGCGGTGGGTGAAAAAAGACTCGCTCCGGCACGGTGTGCAGGAATTGGGCCTGCGATTGGATATAGACGGACGCACGGTGCAGCAGGGCAATACACGGGATATGCTCTTTTCCGTAGATCGTTTGATCGCTTATGCCAGTCGTTTCTTCACACTTCGTATGGGGGATCTTATCTTTACAGGGACTCCGGCAGGGGTAGGCCCCATTGCTATCGGGCAGCACCTCGAAGCCTATCTCGAAGAGCAAAAACTGCTCGACATATCCATCAAA","7.10","0.31","24482","MKIIAVGMNYGAHVSEMRRADILPVAPCPDGGGADFCVEEPVLFLKADSLLREGHPLFYPDFSQEIHYETELVVRIDRIGKCIAERFAHRYYSEVTVGIDFTARDLQRRAKAKGLPWATAKAFDNSAAVGRWVKKDSLRHGVQELGLRLDIDGRTVQQGNTRDMLFSVDRLIAYASRFFTLRMGDLIFTGTPAGVGPIAIGQHLEAYLEEQKLLDISIK","28417 29253 [Bad Olap 24 109 0]","TIGR ID: PG0025","isomerase/hydrolase protein","Cytoplasm","Numerous significant hits in gapped BLAST to isomerase proteins; e.g. residues 2-213 are 36% similar to a putative isomerase in Escherichia coli (AE000216), residues 2-206 are 39% similar to an isomerase-like protein in Arabidopsis thaliana (Z97340), residues 2-209 are 36% similar to a 230aa long hypothetical 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase in Pyrococcus horikoshii (AP000003).","
InterPro
IPR002529
Domain
Fumarylacetoacetate (FAA) hydrolase
PF01557\"[30-200]TFAA_hydrolase
noIPR
unintegrated
unintegrated
G3DSA:3.90.850.10\"[2-214]TG3DSA:3.90.850.10
PTHR11820\"[2-19]T\"[39-219]TPTHR11820
PTHR11820:SF7\"[2-19]T\"[39-219]TPTHR11820:SF7
SSF56529\"[1-219]TSSF56529


","BeTs to 9 clades of COG0179COG name: 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway)Functional Class: RThe phylogenetic pattern of COG0179 is Amtky--cEbR----------Number of proteins in this genome belonging to this COG is 1","***** PF01557 (Fumarylacetoacetate (FAA) hydrolase family) with a combined E-value of 7.7e-18. PF01557B 83-117 PF01557C 180-194","Residues 39-204 are 39% similar to a (ISOMERASE PROTEIN 7-DIOATE 2-HYDROXYHEPTA-2 4-DIENE-1) protein domain (PD002459) which is seen in P76004_ECOLI.","","Tue Jun 12 15:03:52 MDT 2001","","Tue Jun 12 15:06:43 MDT 2001","Tue Jun 12 15:06:43 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Tue Jun 12 15:06:43 MDT 2001","Tue Jun 12 15:06:43 MDT 2001","","","Tue Dec 5 10:35:54 MST 2000","Tue Jun 12 15:09:30 MDT 2001","Mon May 21 16:34:44 MDT 2001","Mon May 21 16:34:44 MDT 2001","Mon May 21 16:34:44 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Mon Mar 20 17:12:17 MST 2000","Mon May 21 16:34:44 MDT 2001","-53% similar to PDB:1SAW X-ray structure of homo sapiens protein FLJ36880 (E_value = 9.6E_32);-49% similar to PDB:1NR9 Crystal Structure of Escherichia coli 1262 (APC5008), Putative Isomerase (E_value = 6.2E_31);-51% similar to PDB:2DFU Crystal structure of the 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase from Thermus Thermophilus HB8 (E_value = 1.3E_25);-45% similar to PDB:1NKQ Crystal Structure of Yeast Hypothetical Protein YNQ8_YEAST (E_value = 1.2E_18);-47% similar to PDB:1GTT CRYSTAL STRUCTURE OF HPCE (E_value = 2.1E_18);","","","Residues 30 to 200 (E-value = 3.1e-34) place PG0021 in the FAA_hydrolase family which is described as Fumarylacetoacetate (FAA) hydrolase family (PF01557)","Mon May 21 16:34:44 MDT 2001","34539902","","","","","","1","","","PG0025" "PG0022","29374","32742","3369","ATGGCTTCGGGACATTGGGTCAAGATACGTGTCGATGCAAGTGGAGTGTATCGCCTTACGGACGAACAGCTCCGTGCCAATGGCTTCTCCGATCCGTCCAAGGTAGGTGTGTTCGGTTATGGTGGAGGGGTGCTTCCCGAAGATCTGAGCCGGATCACGACAGACGATTTGCCTCCGGTACCGGTACTCCGTCAGGGCAATGCGCTGTATTTCTATGCCGTGGGCCCGGTGACATGGTTCTACAATCCGGCCAAAACCACCATGGAGCATACGGTGAATACATACAGTACGCATGGCTACTACTTCCTGTCGGATGCTGCCGGAGCACCTTTGCAGATGTCCCAATATACGGGTGGAGGTGCGTCGGCCGAGGCTTTGATCGACTACTACGATGAGCTGATGCTCCATGAACAGGAATTGTATTCGCCCAAAGAATCGGGACGAGATCTGTATGGCGAGTCTTTCAGTGCAGTCAATACGCGTACGGTCAAGTTCCCTTTGAGGGGCAACACCCGCTCGTCTGGCGAACTCGGTACCGTATTCTCATACATAGCCAAGGCCAGATCGGCCGGTGGCGGCCGTGAGATGTCGCTCTCGGCGAATGGCATTCTGATCTTCAGCGATCCTTTTTCCATGACATCGAATGAAGTCTCCAATTCCTATTTGGCCGGCAAGAAGCGTCGTCTCTATCACAGTACGCCGATGAACAGCTTGGTCAATGAGTTGCGCTTGGACGCGAACTATAGCATGACAGGAGATGCGGTCAATCTGGATTTCATAGAGGTGGCTACACAGAACGACCTCCGGTACGATGGCGCACCCATGCATATCAGGCGGTTTTCCAATTTGCCCGTTTTGGGGGGCGAGTCCTGCCGGTTCGTTATCAGTGAGGTGCCGGAGTCTCTGGTGGTTTTGCAGGCCAATTCTTCCCTGACAGCATCGCTTGTTCCCGTTAAGACTGTCGGGGATAAGACCATTGAGTTCGTGGCTCCGCCGAAGGGTCAGGATCGTAGGACTATCAATACGTTTTATGCCGTGGACTTGTCACAGGCTTCTGCTCCGGAGATCCTCGGAGCGGTACCCAATCAAAACCTGCATGGAGAGGAAATCCCTGATCTGATCATTGTCTCTACTCAGGCGCTCCTCCTTGAGGCTGATCGACTGGCCACCTATCGTAGAGAGAAAAACGGGCTGAAGGTTTTGGTCGTGTTGCAGGAACAGGTGTTCAACGAGTTTTCGGGTGGAACTCCCGATGCTACAGCATACCGCCTCTTTGCCAAAATGTTCTACGACAGATGGAAGGCAAATGCACCTGTGGGAGAGACCTTCCCGATGCAAATGCTTCTCTTCGGTGATGGGGCTCATGACAACAGGAAGGTCTCCGTAGCTTGGCAGAAACCGTATCTCCAACAAACGGAGTTCTTGCTGACATTCCAAGCCGTCAATTCGACGAACGTAAACAGTTATGTGACGGATGATTACTTCGGCTTGCTGGATGATCAGCCGGCCTCGGTCAATATCGGTTGGCGCAATTATAATATGGCTGTAGGGCGATTCCCCGTACGTACTCCGGCCGAAGCTCGCATCGCAGTGGACAAGACCATCCGATATGAGGAGGATCGAGAGAGTGGTGCCTGGCGTATTCGTGCCTGTTTTGCGGCAGACAACGGGGACAAGCACGCAACCGAGACTTCCCGTTTGATCGATACCGTCAAGCGTTATGCTCCTGCCATCATGCCGGTACGCGCCTTTCAGGACGTATATCCGCATGTCATCGAGAACGGGTTGCACAGCATTCCGGGTGCAAAGAAAAAGATGCTGGAAACCCTTCAGTCGGGTATTATCCTGCTTAATTATGCTGGTCATGGCGGTCCTGCCGGATGGTCGGACGAGCATTTGCTGACGCTCAACGATATACACAAATTCAATTATAAGCATATGCCCATTTGGATTACTGCCACGTGCGACTTTGCCAACTATGACAGTCAGACGACCTCGGCAGGGGAGGAGGTTTTCCTCCATGAGAAGAGTGGCACTCCGATCATGTTCTCGACTACGCGTGTCGTTTACAATACGCAGAATGAGAAGATCAATGGTTTTATGCTTCGGCGTATGTTCGAGAAAGCTAAGGATGGGCGTTATCGTACGATGGGCGAGATTATCCGATCGGCCAAACAGGGGATGCTCAGTACTGTTTTCCCCGATTCGATCAACCAGTTGAGTTTCTTTCTGATGGGTGATCCGTCCGTGCGTATGAATCTTCCTACCCACAAAGTGCAATTGACCGCAATCAACGGGCAGGATCCCGAAGGGCAGTATGGAACTATTATGCTCAAGTCTTTGGAACGGGTAGCTCTGAAGGGTAAGGTAACCGATGAAAAGGGGACATTCGACGAGACATTCAGTGGCAAGGTTTTCCTGACCGTCTTCGATGGCAGAAAGAAAATGACAGCTTTGGAAGAGGAGGGAAACGATCTCTCTCTTGTATATTATGACTATCCTAACGTGATGTATGCCGGTATTGCCGAGGTGAAAGACGGACTCTTCGAAACTTCGTTTATCGTACCCAAGGATGTGAACTATTCCGAGCACGAAGGCCGGATCAATCTTTATGCTTATAACGAGAGCACAAAGGCGGAAGCCATGGGGGTAGACTTCTCCATCAGAGTCCAACCGGGTATTCCTGATGAGGTAACGGAAGATAATACACCGCCTGAAATCATAAGCTGCTTCCTCAATGACAGTACATTCCGATCGGGAGATGAGGTTAATCCTACTCCTCTGTTTATGGCCGAAGTATTCGACTTGAATGGAATCAATATCACGGGTAGCGGAGTAGGGCATGATATTACGCTTTGTATCGATGGCCGTGCCGACCTGACCTACAACCTCAATGCATATTTCACAAGTTCGGCTACGGATGCAGGTGTGGGCACTATTCTCTTCATGATACCGGCTTTGGCCGAAGGAGATCATACTGCCCGACTGACGGTTTGGGACATTTTCAATAATGCCGTCCATCATGACTTTTCATTCAGAGTGGTAGATGGCATTGCTCCGGATGTGGCTGATGTGATTCTATTCCCGAATCCGGTACGCGAGAGTGCTACGTTCCGAATCTTCCACAATCGCCCCGGAAGCGATTTGAACGTGGCCGTGGAGATCTATGACTTCACCGGTCGTCTTGTGAACAGTTTGCCAGTCAAGACCTATTCGTCTTCCTACGGAGAACCTATAGAGATCAAGTGGGATCTGACCTCCAAATACGGAGTGAAGATCGGAAACGGATTCTACCTCTATCGTTGTGTGGTGAACTCTCCCGGAGGACAGACGGCCTCCATGGCCAAGAAAATGATCGTGGTAGGACAA","5.30","-23.63","124502","MASGHWVKIRVDASGVYRLTDEQLRANGFSDPSKVGVFGYGGGVLPEDLSRITTDDLPPVPVLRQGNALYFYAVGPVTWFYNPAKTTMEHTVNTYSTHGYYFLSDAAGAPLQMSQYTGGGASAEALIDYYDELMLHEQELYSPKESGRDLYGESFSAVNTRTVKFPLRGNTRSSGELGTVFSYIAKARSAGGGREMSLSANGILIFSDPFSMTSNEVSNSYLAGKKRRLYHSTPMNSLVNELRLDANYSMTGDAVNLDFIEVATQNDLRYDGAPMHIRRFSNLPVLGGESCRFVISEVPESLVVLQANSSLTASLVPVKTVGDKTIEFVAPPKGQDRRTINTFYAVDLSQASAPEILGAVPNQNLHGEEIPDLIIVSTQALLLEADRLATYRREKNGLKVLVVLQEQVFNEFSGGTPDATAYRLFAKMFYDRWKANAPVGETFPMQMLLFGDGAHDNRKVSVAWQKPYLQQTEFLLTFQAVNSTNVNSYVTDDYFGLLDDQPASVNIGWRNYNMAVGRFPVRTPAEARIAVDKTIRYEEDRESGAWRIRACFAADNGDKHATETSRLIDTVKRYAPAIMPVRAFQDVYPHVIENGLHSIPGAKKKMLETLQSGIILLNYAGHGGPAGWSDEHLLTLNDIHKFNYKHMPIWITATCDFANYDSQTTSAGEEVFLHEKSGTPIMFSTTRVVYNTQNEKINGFMLRRMFEKAKDGRYRTMGEIIRSAKQGMLSTVFPDSINQLSFFLMGDPSVRMNLPTHKVQLTAINGQDPEGQYGTIMLKSLERVALKGKVTDEKGTFDETFSGKVFLTVFDGRKKMTALEEEGNDLSLVYYDYPNVMYAGIAEVKDGLFETSFIVPKDVNYSEHEGRINLYAYNESTKAEAMGVDFSIRVQPGIPDEVTEDNTPPEIISCFLNDSTFRSGDEVNPTPLFMAEVFDLNGINITGSGVGHDITLCIDGRADLTYNLNAYFTSSATDAGVGTILFMIPALAEGDHTARLTVWDIFNNAVHHDFSFRVVDGIAPDVADVILFPNPVRESATFRIFHNRPGSDLNVAVEIYDFTGRLVNSLPVKTYSSSYGEPIEIKWDLTSKYGVKIGNGFYLYRCVVNSPGGQTASMAKKMIVVGQ","29269 32742","TIGR ID: PG0026","conserved hypothetical protein","Outer membrane, Cytoplasm, Extracellular","Numerous significant hits by the C-terminal residues in gapped BLAST to gingipain precursor proteins; e.g. residues 496-763 are 23% similar to residues 316-585 of CPG1_PORGI. No significant hits involving the N-terminal ~500 amino acids nor to the ~300 C-terminal amino acids.","
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.1460\"[524-754]TG3DSA:3.40.50.1460
SSF52129\"[362-756]TSSF52129


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Tue Jun 12 15:11:05 MDT 2001","","Tue Jun 12 15:11:05 MDT 2001","Tue Jun 12 15:11:05 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Tue Jun 12 15:11:05 MDT 2001","Tue Jun 12 15:11:05 MDT 2001","","","Fri Sep 10 16:50:03 2004","Tue Jun 12 15:15:36 MDT 2001","Tue Dec 5 10:39:32 MST 2000","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 496-763 are 23% similar to the same domains (residues 318-587) in PG0461, gingipain R2, and in PG1768, gingipain R1.","Tue Jun 12 15:15:36 MDT 2001","Fri Sep 10 16:50:03 2004","-40% similar to PDB:1CVR CRYSTAL STRUCTURE OF THE ARG SPECIFIC CYSTEINE PROTEINASE GINGIPAIN R (RGPB) (E_value = 8.9E_10);-45% similar to PDB:2GZA Crystal structure of the VirB11 ATPase from the Brucella Suis type IV secretion system in complex with sulphate (E_value = 8.9E_10);-44% similar to PDB:1CM5 CRYSTAL STRUCTURE OF C418A,C419A MUTANT OF PFL FROM E.COLI (E_value = 8.9E_10);-44% similar to PDB:1H16 PYRUVATE FORMATE-LYASE (E.COLI) IN COMPLEX WITH PYRUVATE AND COA (E_value = 8.9E_10);-44% similar to PDB:1H17 PYRUVATE FORMATE-LYASE (E.COLI) IN COMPLEX WITH COA AND THE SUBSTRATE ANALOG OXAMATE (E_value = 8.9E_10);","","","No significant hits to the Pfam 11.0 database","Sun Jun 24 12:12:32 MDT 2001","34539903","","Check:Proteases/Hemagglutinin AnalysisZhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Tue Mar 1 08:44:48 2005","","1","","","PG0026" "PG0023","32821","33993","1173","ATGATTATCAAGAAAATGCTGAAAAATAAATTGGCCCCCTTGGCCATACTGTTCCTTTTTGCTCCAAAGGCTATGAAGGCTCAGGAGCAACTGAATGTGGTACACACCTCTGTGCCATCGCTGAATATCAGTCCGGATGCACGTGCGGCCGGTATGGGGGATATAGGTGTGGCAACGACGCCGGATGCGTATTCACAGTATTGGAATCCGAGTAAATATGCTTTCATGGATACGAAAGCCGGTATTAGCTTCTCATATACACCCTGGCTGTCCAAGCTGGTCAATGATATTGCCCTGATGCAGATGACCGGTTTCTACAAATTGGGAACAGACGAGAATCAGGCTATTAGTGCTTCTCTGCGTTATTTCACATTAGGAAAGTTGGAGACTTTCGACGAATTGGGCGAATCCATGGGAGAGGCCCATCCCAATGAATTTGCTGTCGATTTGGGCTATAGCCGCCAGTTGTCGGAGAACTTCTCCATGGCTGTTGCACTGCGTTACATCCGCTCAGACCAAAGCACTCACAACACCGGAGAGAATCAGGCCGGAAATGCCTTTGCGGCGGATATAGCCGGTTATTTGCAGAAGTATGTGCTACTGGGTAATGCGGAGAGCTTGTGGTCGTTGGGTTTCAACGTAAAGAATATCGGAACGAAGATCTCCTATGACGGAGGTGTCACGAGTTTTTTCATCCCTACTTCGTTGAATCTCGGGACGGGGCTGTTGTATCCGATCGATGACTATAACAGCATCAATTTCAACCTTGAACTTAGCAAGCTGCTTGTACCCACTCCTCCTATCATGGATCAAAACGATCAGGCCGGGTATGAGGCTGCACTCAAGAAATATCAGGAAACTTCTTCGATCAGCGGTATATTCTCTTCTTTCGGTGATGCGCCGGGAGGACTCAAGGAAGAATTCCGTGAGATTACATGGGGACTTGGGGCTGAATATAGCTATGACGATAAATTTTTTGTTCGTGCCGGATATTCATACCTGCACCCCACCAAAGGCAATTTGCAGTACTTCACGGCCGGTGCCGGCTTCAAAATGAACATATTCCGTATCGATGCTTCCTACCTGTTGTCTACGATCCAGAGTAATCCGTTGGATCAGACTCTGCGGTTTACGCTTGCTTTCGATATGGATGGATTGCGCAATTTGTTCCAC","5.10","-6.78","43255","MIIKKMLKNKLAPLAILFLFAPKAMKAQEQLNVVHTSVPSLNISPDARAAGMGDIGVATTPDAYSQYWNPSKYAFMDTKAGISFSYTPWLSKLVNDIALMQMTGFYKLGTDENQAISASLRYFTLGKLETFDELGESMGEAHPNEFAVDLGYSRQLSENFSMAVALRYIRSDQSTHNTGENQAGNAFAADIAGYLQKYVLLGNAESLWSLGFNVKNIGTKISYDGGVTSFFIPTSLNLGTGLLYPIDDYNSINFNLELSKLLVPTPPIMDQNDQAGYEAALKKYQETSSISGIFSSFGDAPGGLKEEFREITWGLGAEYSYDDKFFVRAGYSYLHPTKGNLQYFTAGAGFKMNIFRIDASYLLSTIQSNPLDQTLRFTLAFDMDGLRNLFH","32821 33993","Veith et al. (2002) identified this protein by two-dimensional gel electrophoresis and peptide mass fingerprinting of outer membranes prepared from strain W50. They present the following results: This protein is strongly predicted by PSORT to be located in the outer membrane. The presence of few Cys residues support this conclusion. The peptide mass data indicate that the mature N-terminus of this protein is pyroglutamate.TIGR ID: PG0027","probable integral outer membrane protein P40","Outer membrane, Extracellular","No significant hits in gapped BLAST.","
noIPR
unintegrated
unintegrated
SSF56925\"[204-352]TSSF56925


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Thu Feb 7 17:37:02 2002","Mon Feb 11 12:26:27 2002","Mon Mar 20 17:19:43 MST 2000","Wed Dec 13 11:14:09 MST 2000","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Mon Mar 20 17:19:43 MST 2000","Thu Feb 7 17:37:02 2002","-64% similar to PDB:1MYR MYROSINASE FROM SINAPIS ALBA (E_value = );-42% similar to PDB:2BHM CRYSTAL STRUCTURE OF VIRB8 FROM BRUCELLA SUIS (E_value = );","","","No significant hits to the Pfam 11.0 database","Thu Feb 7 17:37:02 2002","34539904","","Veith,P., Talbo,G., Slakeski,N., Dashper,S., Moore,C.,Paolini,R., Reynolds,E., Major outer membrane proteins and proteolytic processing of RgpA, and Kgp of Porphyromonas gingivalis W50, Biochem J. 2002 (in press).","","Thu Feb 7 17:37:02 2002","","1","","","PG0027" "PG0024","34003","34488","486","ATGAAGAAGCCTTTTCGAATAGGATTCGGTTTCGATGTACACCGCTTGTCCGAAGGTTATCCTTTGTGGATGGGCGGTGTTCGTCTGGAACATTCCAAGGGCTTGGAGGGACATTCCGATGCCGATGTGCTCATTCATGCTATTTGTGATGCCCTGCTGGGTGCTGCCGCTTTGCGTGATATCGGCTATCACTTTCCTCCTTCGGATCCTCAATATAAGGGGATCGATAGTAAGATCCTGTTGGCTCGCGTTATGGAATTGGTGCGTTCACAGGGTTATGAATTGGGTAATATCGATGCTACTATTGCGGCGGAACAGCCCAAACTGAATCCACATATACCGGATATGCAGCGTGTCTTGGCTGAGGTGATACAGGTGGAGGTGTCGGATATTTCACTGAAAGCCACAACGACGGAGAAACTTGGCTTCACAGGACGAGAGGAAGGCATTTCCGCCTATGCCGTGGCCTTGCTCATTGCTGCCGTC","5.90","-3.61","17635","MKKPFRIGFGFDVHRLSEGYPLWMGGVRLEHSKGLEGHSDADVLIHAICDALLGAAALRDIGYHFPPSDPQYKGIDSKILLARVMELVRSQGYELGNIDATIAAEQPKLNPHIPDMQRVLAEVIQVEVSDISLKATTTEKLGFTGREEGISAYAVALLIAAV","34003 34488","TIGR ID: PG0028","2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase","Cytoplasm","Numerous significant hits in gapped BLAST; e.g.residues 6-158 are 68% similar to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase in Bacteroides thetaiotaomicron VPI-5482 (gi|29349292|ref|NP_812795.1), residues 5-159 are 63% similar to (gi|23957793|gb|AAN40806.1) IspF in Synechocystis sp., residues 6-158 are 54% similar to (gi|7531255|sp|Q47956) 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (MECPS) in Haemophilus ducreyi, residues 6-159 are 50% similar to (AE002501) YgbB/YacN family protein in Neisseria meningitidis.","
InterPro
IPR003526
Domain
MECDP-synthase
PF02542\"[5-161]TYgbB
TIGR00151\"[6-160]TispF
PS01350\"[39-54]TISPF
SSF69765\"[5-159]TYgbB_synth
InterPro
IPR010925
Family
2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
PIRSF005911\"[5-162]TMECDP_synth
noIPR
unintegrated
unintegrated
G3DSA:3.30.1330.50\"[5-156]TG3DSA:3.30.1330.50


","BeTs to 10 clades of COG0245COG name: Putative enzyme of deoxyxylulose pathway (terpenoid biosynthesis), YgbB familyFunctional Class: RThe phylogenetic pattern of COG0245 is -----qvcebrhujgp-lin-Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 6-158 are 56% similar to a (PROTEIN YGBB INTERGENIC REGION) protein domain (PD006214) which is seen in YACN_BACSU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Apr 22 14:40:02 2003","Tue Apr 22 14:40:02 2003","Tue Nov 18 15:52:10 2003","Mon Feb 12 22:41:19 MST 2001","Mon Feb 12 22:16:29 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Mon Mar 20 17:22:32 MST 2000","Mon Feb 12 22:16:29 MST 2001","-74% similar to PDB:1T0A Crystal Structure of 2C-Methyl-D-Erythritol-2,4-cyclodiphosphate Synthase from Shewanella Oneidensis (E_value = 6.9E_46);-71% similar to PDB:1GX1 STRUCTURE OF 2C-METHYL-D-ERYTHRITOL-2,4-CYCLODIPHOSPHATE SYNTHASE (E_value = 2.2E_44);-71% similar to PDB:1H47 STRUCTURES OF MECP SYNTHASE IN COMPLEX WITH (I) CMP AND (II) CMP AND PRODUCT (E_value = 2.2E_44);-71% similar to PDB:1H48 THE STRUCTURE OF 2C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE IN COMPLEX WITH CMP AND PRODUCT (E_value = 2.2E_44);-71% similar to PDB:1JY8 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (IspF) (E_value = 2.2E_44);","","","Residues 5 to 161 (E-value = 7.1e-88) place PG0024 in the YgbB family which is described as YgbB family (PF02542)","Tue Apr 22 13:56:42 2003","34539905","","","Xu,J., Bjursell,M.K., Himrod,J., Deng,S., Carmichael,L.K.,Chiang,H.C., Hooper,L.V. and Gordon,J.I.A Genomic View of the Human-Bacteroides thetaiotaomicron SymbiosisScience 299 (5615), 2074-2076 (2003)PUBMED 12663928","","Tue Nov 18 15:52:10 2003","1","","","PG0028" "PG0025","35295","34597","699","TTGCTAAATTTACAATTATGTTGCACTTATACATGGGATCTGCACTCGAAAAAAACTGAACTTCAGAACGCCATTCAAGGTTTTCATCCTATATTTAGAAATTCGTTGCATTTGATAATGGAATGTGCACCGATCACTCAATCCGACCAGACAACAGACATGCGCAAAAAAAAGACTATCGAAATACAGCGACTCAAAACAGAAGAATATCACGAAAGCCCCAAGCTACCTATCAGGATCATACTGGATGATATACGTAGTATGAACAATGTCGGGTCAGTCTTTAGAACGGCCGATGCTTTTCGGTTAGAAGGGCTATGCTTGTGCGGAATCACAGCTCGGCCACCTCATCCCGACATACACAAGACAGCTTTAGGAGCCGAGGACAGTGTGAAATGGGAGTATTTCTCTTCGGTAGTGGATGCAATAGAAGAATTGAAAGCAAAAGGATATAGTATCTGTGCGATAGAACAGGCGGAAGGAAGCCTATCCTTGGAAAATTTCTCCCCCTCAAAAGGCACACGCTACGCCCTTATCTTTGGCAATGAAGTAAAAGGAGTACGACAGGAAGCCATCGACCTCTGTGACCTCTGCTTAGAGATACCCCAGTTCGGCACGAAGCATTCGCTCAATGTAAGTGTCACAGCGGGAATCGTCATCTGGCAACTGGTCAAGCCGCTACTTCCCCTCCTGAAAAAA","7.10","0.31","26208","LLNLQLCCTYTWDLHSKKTELQNAIQGFHPIFRNSLHLIMECAPITQSDQTTDMRKKKTIEIQRLKTEEYHESPKLPIRIILDDIRSMNNVGSVFRTADAFRLEGLCLCGITARPPHPDIHKTALGAEDSVKWEYFSSVVDAIEELKAKGYSICAIEQAEGSLSLENFSPSKGTRYALIFGNEVKGVRQEAIDLCDLCLEIPQFGTKHSLNVSVTAGIVIWQLVKPLLPLLKK","35295 34597","TIGR ID: PG0029","RNA methylase SpoU family","Cytoplasm","Numerous significant hits in gapped BLAST to methyltransferase proteins; e.g. residues 77-220 are 32% similar to the RNA methyltransferase, TrmH family in Neisseria meningitidis (AE002444); residues 52-221 are 27% similar to the spoU protein in Borrelia burgdorferi; residues 80-220 are 30% similar to the OBP33pep-like protein in Arabidopsis thaliana (Z97339).","
InterPro
IPR001537
Domain
tRNA/rRNA methyltransferase, SpoU
PD001243\"[77-212]TQ8A2Z0_BACTN_Q8A2Z0;
PF00588\"[77-221]TSpoU_methylase
noIPR
unintegrated
unintegrated
G3DSA:3.40.1280.10\"[56-227]Tno description
PTHR12029\"[54-228]TRNA METHYLTRANSFERASE
PTHR12029:SF6\"[54-228]Tgb def: TRNA/rRNA methyltransferase


","BeTs to 14 clades of COG0566COG name: rRNA methylasesFunctional Class: JThe phylogenetic pattern of COG0566 is a---YQvCEBRHujgpOLinxNumber of proteins in this genome belonging to this COG is 3","***** PF00588 (SpoU rRNA Methylase family) with a combined E-value of 1.4e-11. PF00588A 80-98 PF00588B 201-226","Residues 80-222 are 27% similar to a (PROTEIN METHYLTRANSFERASE TRANSFERASE TRNA/RRNA RRNA) protein domain (PD001243) which is seen in YACO_BACSU.","","","","","","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","","","","","Wed Dec 13 11:17:51 MST 2000","Wed Dec 13 11:17:51 MST 2000","Wed Dec 13 11:17:51 MST 2000","Fri Mar 9 15:35:57 MST 2001","Fri Mar 9 15:35:57 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 44-225 are 28% similar to PG1610,rRNA/tRNA methyltransferase. Residues 78-219 are 25% similar to PG0672, rRNA methylase; RNA methyltransferase.","Wed Mar 28 14:59:10 MST 2001","Fri Mar 9 15:35:57 MST 2001","-50% similar to PDB:1V2X TrmH (E_value = 2.1E_11);-52% similar to PDB:1ZJR Crystal Structure of A. aeolicus TrmH/SpoU tRNA modifying enzyme (E_value = 7.9E_11);-59% similar to PDB:2HA8 Methyltransferase Domain of Human TAR (HIV-1) RNA binding protein 1 (E_value = 2.3E_10);","","","Residues 77 to 221 (E-value = 3e-18) place PG0025 in the SpoU_methylase family which is described as SpoU rRNA Methylase family (PF00588)","Fri Mar 9 15:35:57 MST 2001","","","","","","","1","","","PG0029" "PG0026","35986","36459","474","ATGCTCCGTAAAACTCTTTCCACTCCTTATGATATAATTCCCCGATCGGATTTCTCTGCCGATGTGCTCCGTCTGGAAGGTGCCGCCATCGAGGCAGCCCGGTCGGCATATGCACCTTATAGTCGCTTTTCGGTGGGAGCGGCTGTTTTGCTCGACAATGGGGAGATCCTTTCAGGCAGCAATCAGGAGAATGCAGCCTATCCGTCCGGACTATGTGCCGAGCGTACGGTGCTTTTCTATGCCGGAGCCAGATATCCGGAGGCAGCCGTGAGAGAGATGGTGCTCGTGGCTTTTTCCGCTTCGGGACGTGTGCCGCTGATTACGCCGTGCGGGGCTTGCCGTCAGGTGATGCTGGAGGTTTGTAGTCGCCATCGTCCTTTTCCCATCTTGATGGTCGGGGAAGAGGAGGCTGTCAGAGTGTCGGATGTGCGTCTGCTGCTGCCCTTTTCTTTCGACGGTAGCGACTTGGAACGA","5.10","-2.95","17175","MLRKTLSTPYDIIPRSDFSADVLRLEGAAIEAARSAYAPYSRFSVGAAVLLDNGEILSGSNQENAAYPSGLCAERTVLFYAGARYPEAAVREMVLVAFSASGRVPLITPCGACRQVMLEVCSRHRPFPILMVGEEEAVRVSDVRLLLPFSFDGSDLER","35914 36459","TIGR ID: PG0030","cytidine deaminase","Cytoplasm","Numerous significant hits in gapped BLAST to cytidine deaminaseproteins; e.g. residues 31-144 are 41% similar to CDD_MOUSE;residues 23-156 are 40% similar to the cytidine deaminase ofBacillus caldolyticus (AJ237979).","
InterPro
IPR002125
Domain
CMP/dCMP deaminase, zinc-binding
PF00383\"[19-131]TdCMP_cyt_deam_1
PS00903\"[72-117]?CYT_DCMP_DEAMINASES
InterPro
IPR006262
Family
Cytidine deaminase, homotetrameric
PIRSF001250\"[21-157]TCyd_deaminase
PTHR11644:SF2\"[28-157]TCyt_deam_tetra
TIGR01354\"[23-156]Tcyt_deam_tetra
noIPR
unintegrated
unintegrated
G3DSA:3.40.140.10\"[12-157]TG3DSA:3.40.140.10
PTHR11644\"[28-157]TPTHR11644
SSF53927\"[22-157]TSSF53927


","BeTs to 7 clades of COG0295COG name: Cytidine deaminaseFunctional Class: FThe phylogenetic pattern of COG0295 is ----y-v-ebrh--gpo----Number of proteins in this genome belonging to this COG is 1","***** BP03466 (CYTIDINE DEAMINASE HYDROLASE ZINC AMINOHYDROLA) with a combined E-value of 2.7e-24. BP03466A 36-47 BP03466B 59-85 BP03466C 108-120 BP03466D 142-156","Residues 31-151 are 42% similar to a (DEAMINASE CYTIDINE HYDROLASE ZINC) protein domain (PD003466) which is seen in CDD_HUMAN.","","Tue Jun 12 15:17:44 MDT 2001","","Tue Jun 12 15:17:55 MDT 2001","Tue Jun 12 15:17:55 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Tue Jun 12 15:17:55 MDT 2001","Tue Jun 12 15:17:55 MDT 2001","","","Mon Apr 3 17:50:23 MDT 2000","Tue Jun 12 15:20:20 MDT 2001","Wed Dec 13 11:19:55 MST 2000","Wed Mar 31 18:42:39 2004","Wed Mar 31 18:42:39 2004","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Mon Apr 3 17:50:23 MDT 2000","Mon Apr 23 15:06:55 2001","-58% similar to PDB:1ZAB Crystal Structure of Mouse Cytidine Deaminase Complexed with 3-Deazauridine (E_value = 2.8E_20);-58% similar to PDB:2FR5 Crystal Structure of Mouse Cytidine Deaminase Complexed with Tetrahydrouridine (E_value = 2.8E_20);-58% similar to PDB:2FR6 Crystal Structure of Mouse Cytidine Deaminase Complexed with Cytidine (E_value = 2.8E_20);-56% similar to PDB:1MQ0 Crystal Structure of Human Cytidine Deaminase (E_value = 1.1E_19);-58% similar to PDB:2D30 Crystal Structure of Cytidine Deaminase Cdd-2 (BA4525) from Bacillus Anthracis at 2.40A Resolution (E_value = 1.2E_18);","","","Residues 20 to 131 (E-value = 6.9e-10) place PG0026 in the dCMP_cyt_deam family which is described as Cytidine and deoxycytidylate deaminase zinc-binding region (PF00383)","Mon Apr 23 15:06:55 2001","34539906","","","","","","1","","","PG0030" "PG0026.1","36526","36786","261","GTGTGTTTTATTTTCCACACAGTGTTTTTCAGGCACTTATATTGCTTTCAGATGGCTTTTTATCTACATATGAAGCCCAATGACTTAGAAGCCGCCCCTTCTTCCCGATCATTATGCAGCCGGAGAATCACAAAAGAGTATGATTTACAGCTACTCGTTATTTTTATGGTATGTTCGCTTAGATCGAACTGGCGTTATATCTCGTACCCGAATGGTTTACACGCCAAAATTTTTGCGCTTGTGGTCGCTGAAAACATGGCG","","","10268","VCFIFHTVFFRHLYCFQMAFYLHMKPNDLEAAPSSRSLCSRRITKEYDLQLLVIFMVCSLRSNWRYISYPNGLHAKIFALVVAENMA","","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No significant hits in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-19]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Wed Dec 13 11:32:55 MST 2000","Wed Dec 13 11:32:55 MST 2000","Wed Dec 13 11:27:46 MST 2000","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1-65 are 98% similar to residues 1-65 of PG1228.1, a hypothetical protein.","Wed Dec 13 11:32:55 MST 2000","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG0027","37669","36998","672","GTGCAGATTGCTCGCGAAGAAACCAGAAAAAGCGGTGCCAATATCCTGTACGTGATCAATCACCAACGACCCTCTATCTTCGGCAGCTCCATGCATCAGATAGGCGGGCTTATGCTCTTGTCAGATTCTGTCGTGAGGAACGAGGGAGAAGGTTATCCCGACTCGCTCCTGTACGATTCGGGTCAAAGGGGGAAAATCGGCTCTCGGATCAAGGCACCCGTACACGACCTTTCATTCCATTTCGGCCCCTCTACCATCACGAATCGGACAAAAGGGCTGTCTTATTCGGAGCAGCAGCTGGAGAAAAAGCTAAGCAACGGACTTTCGTTCGTACTCCAATATAAATGTCACCCGAAAGGGAACCTCTACGGATTCGGTCTGATCGCCTCTCGATATGAAGCCGACATCACTAAGAAAATCGAATACCAGGGTATCGGATTCGCCAATCGATTGGACTATATCGCTCCCTTATTCAGCATGAGTACTGCTCTTTCGGAGCGGTGGTTCCTTGGGATGAGTTTCGGAAAAGATGGGAGTCAATCGGTTCGACTTCACTATCGGTTTGCACGTTTACCTGTAGATCGGGATCTATCCGCAGTCGGCTGTGTACGGAAAAAATCGCCGCACACAGACGATTGCCGTCTTACAGTGTCACCTCTTTATAGACCTTCA","10.40","11.53","25069","VQIAREETRKSGANILYVINHQRPSIFGSSMHQIGGLMLLSDSVVRNEGEGYPDSLLYDSGQRGKIGSRIKAPVHDLSFHFGPSTITNRTKGLSYSEQQLEKKLSNGLSFVLQYKCHPKGNLYGFGLIASRYEADITKKIEYQGIGFANRLDYIAPLFSMSTALSERWFLGMSFGKDGSQSVRLHYRFARLPVDRDLSAVGCVRKKSPHTDDCRLTVSPLYRPS","37669 36998","TIGR ID: PG0031","hypothetical protein","Outer membrane, Extracellular","No hits to gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Mon Dec 18 10:44:03 MST 2000","Fri Apr 7 10:30:46 MDT 2000","Mon Dec 18 10:44:03 MST 2000","","","yes","Fri Feb 20 15:41:32 MST 1998","PG0027 is paralogously related to PG1530, a hypothetical protein. Residues 1-175 are 97% similar to PG1530.","Mon Dec 18 10:44:03 MST 2000","Wed Mar 28 15:02:04 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Mar 28 15:02:04 MST 2001","34539907","","","","","","1","","","PG0031" "PG0028","40302","37720","2583","ATGATTAGCAAGAACACCTTCCGAACATTTCTCCTATGGTTGATCCCGATATCCATAACCTTCCAAACCCAAGCGGCACATACCATTTCGGCCGACACACTCCATCTCGACAAGGGCTGGGAATTCAGCCGGCATGATAGCACGGCATGGCTGCCGGCCACAGTGCCCGGAGTCGTGCAGTACGACCTTATCCGTCATGGTTTGCTGCCCGATCCCAACTACAGACTTCAGGAGGAACAGGCACAATGGCCGGAAGAGCACGACTGGGATTATCGGCTGCTCTTCTCCCTCACGGAACAGCAACTCCGAAGCCTACGAGCCATCCTTATGGCAGAAGGACTGGACACCTATGCCACCGTATTCCTCAATGGGAAAAAGATAATGGAGAGCCACAATATGTTTGTCGGCAGAGAAGCGGATATAACCGGTCTACTGCGAAAAAGCGGAAACGAACTGCTGATCCGCTTCCGCTCACCCATGAAGGAAGTACGCCCTCTGAGACAGCGCGATGGTTTCGACTACCCTGCAGACAACGATCACCACAACGAAAAGCTAAGTGTATATACTCGAAAAGCACCCTACCACTATGGTTGGGACTGGGGGCCTCGACTGGTAACCACAGGTGTTTGGCGACCTGTCGGCATACGTTTCGAAGGGGCAGTAGCCTTCGCATCGAAACCGGAAGTCACCTACACGCTGACAAAAGATGCTCAGGTAAACTGTCTCTTTCCTCTCTCTTGGAACGAGCAGAACGACCGCTCTGTCCGTTTGGTTGTGGAGCTGTACAGCCCGAACGGACGGAAAGTGCACAGCGAAGAGCTGACGGCAGGCTATGGGCAACCTTCCTGTCGCACCTCTTTCACCGTATTATCCCCCGATCGGTGGATGCCCAATGGGATAGGCCTGCCCCTGATGTACACACTCGTTGCCCGTCTTCAGGACAAAGACGGTACCACATGGCAGACCTACCGAACCCAAATAGGATTCCGAACCGTGGAATTCGTCCGTGAAGAGGATACCCACGGGCGCAGCTTCTTCTTCCGCATCAACGGAAAGCCGCTATACATGAAGGGAGCCAACTATATCCCCGGCACCATGATGCTGTCCGCACGCACGGAGGAGTATTGGCAGGAGCTTTTCCGCTCTGTCTCGGAAGCGAATATGAATATGCTGCGCGTATGGGGAGGCGGTATATACGAGGACGAACGTTTCTATGAGTTGGCGGATGCGAACGGGATTCTCATCTGGCAAGATTTCGCTTTTGCTTGCACTCCCTATCCGGGCGACAAGGAATTCCTTCGGAATGTGAGAGAAGAGGCCGATTACAACATCCGTCGATTGCGCGAACATCCGTCTTTGGCTCTCTGGTGCGGCAACAATGAAATACGAGAAGGCCTCAAATACTGGGGATGGCAAAAACGCTCCGACCGATCCACCTATCAGAAGTTTCTCACGGACTACGACAAGCTGTTTTGCCGACTTCTGCCGGAGCGTGTGGCAGCATTGGATCCCACACGCGCCTATGTAGAGACATCCCCCGACACGGCTAACTGGGGACGCCCAGCCACTTTGGTCTGGGGTGACAGCCACTACTGGGGAGTATGGTACGGACGCGAACCATTCGGCATCCTGCGAGAGAGGATCCCGCGCTTCATGAGCGAATTCGGATTTGAAAGTTTCCCCGAAAGAAAAACGTTGGAGAGCTTTGCATGGCCGGAGGACATGCAGCTCGACTCCCCCGTCATGAAAGCCAGACAGAAGAGCAGCGTGGGCAATGAGATTATACTCGAATATATGCGGCGAGACTATCCCGAGCCAAAGGACTTCGATGATTTCGTATTCAAATCGCTCATCATGCAGGGGCAAGGTATGCGCATCGGATTAGAAGCCCAACGAGCGGCCAAACCCTACTGCATGGGTAGCCTCTACTGGCAACTCAACGATGCATGGCCGGCCATCTCATGGTCCGGCATAGACTACTACGGGAACTGGAAACCGTTGCACTATCAGGTACGCAGAGCTTTCGAACCCGTTATCATCGTTCCAGATGCCGAACGGCGCACGATCAGCATCGTATCGGATGCTCCCGAAGCCAAAGGAGAGGATCGGATGGCACTGCGCATCGAGCCGATCAGCTTCGAGGGGAAACGCTATCCGACTTTTTGGGTGAGGAATATCGAAGTAGACAACGAACACCCCACCGTCCTGCCATTCCCGATCGAACAATGGCTGCCACAGGAATTGCAGCGAACGAACCTGCTTCGCCTGTCGCTTGTGGAGGATGTGGGAGAAGCATACGGCGAAGTCTGGGCCTCCACGCTGTATTATCATCATTCGCCCAAGGATTTGCTACTACCTGTGGCTCCTCCTATCTCGCAAGAGCTTCGCCGGACAGGCCTGAGGACTTGGGAGCTGACAGTGCGGTCACCCTATTTGGTGAAGGATCTATTTGTGGAAACGGATGCACTCGGAGCGCGATTCTCCGACAATGCTTTCGATTTGCTCCCGAACGAAGAGCGCAGACTAATAATCACGCTGCCCACCGATAGTACGGAAGACCCGGCTATTCGTCTGCGACACTTA","6.20","-8.84","100495","MISKNTFRTFLLWLIPISITFQTQAAHTISADTLHLDKGWEFSRHDSTAWLPATVPGVVQYDLIRHGLLPDPNYRLQEEQAQWPEEHDWDYRLLFSLTEQQLRSLRAILMAEGLDTYATVFLNGKKIMESHNMFVGREADITGLLRKSGNELLIRFRSPMKEVRPLRQRDGFDYPADNDHHNEKLSVYTRKAPYHYGWDWGPRLVTTGVWRPVGIRFEGAVAFASKPEVTYTLTKDAQVNCLFPLSWNEQNDRSVRLVVELYSPNGRKVHSEELTAGYGQPSCRTSFTVLSPDRWMPNGIGLPLMYTLVARLQDKDGTTWQTYRTQIGFRTVEFVREEDTHGRSFFFRINGKPLYMKGANYIPGTMMLSARTEEYWQELFRSVSEANMNMLRVWGGGIYEDERFYELADANGILIWQDFAFACTPYPGDKEFLRNVREEADYNIRRLREHPSLALWCGNNEIREGLKYWGWQKRSDRSTYQKFLTDYDKLFCRLLPERVAALDPTRAYVETSPDTANWGRPATLVWGDSHYWGVWYGREPFGILRERIPRFMSEFGFESFPERKTLESFAWPEDMQLDSPVMKARQKSSVGNEIILEYMRRDYPEPKDFDDFVFKSLIMQGQGMRIGLEAQRAAKPYCMGSLYWQLNDAWPAISWSGIDYYGNWKPLHYQVRRAFEPVIIVPDAERRTISIVSDAPEAKGEDRMALRIEPISFEGKRYPTFWVRNIEVDNEHPTVLPFPIEQWLPQELQRTNLLRLSLVEDVGEAYGEVWASTLYYHHSPKDLLLPVAPPISQELRRTGLRTWELTVRSPYLVKDLFVETDALGARFSDNAFDLLPNEERRLIITLPTDSTEDPAIRLRHL","40302 37720","TIGR ID: PG0032","beta-mannosidase (mannanase)","Periplasm, Cytoplasm","Numerous significant hits in gapped BLAST to beta-mannosidase e.g. residues 34-717 are 35% similar to the predicted beta-mannosidase, of Thermotoga maritima ((AE001806) and residues 32-845 are 30% similar to the putative beta-mannosidase of Streptomyces coelicolor (AL031514).","
InterPro
IPR006102
Domain
Glycoside hydrolase family 2, immunoglobulin-like beta-sandwich
PF00703\"[226-330]TGlyco_hydro_2
SSF49303\"[222-330]TGlyco_hydro_2Ig
InterPro
IPR006104
Domain
Glycoside hydrolase family 2, carbohydrate-binding
PF02837\"[112-155]TGlyco_hydro_2_N
InterPro
IPR008979
Domain
Galactose-binding like
SSF49785\"[10-220]TGal_bind_like
InterPro
IPR013781
Domain
Glycoside hydrolase, catalytic core
G3DSA:3.20.20.80\"[347-588]TGlyco_hydro_cat
noIPR
unintegrated
unintegrated
G3DSA:2.60.120.260\"[34-155]TG3DSA:2.60.120.260
PTHR10066\"[356-852]TPTHR10066
PTHR10066:SF12\"[356-852]TPTHR10066:SF12
SSF51445\"[339-676]TSSF51445


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 34-337 are 26% similar to a (BETA-MANNOSIDASE PRECURSOR MANNANASE MANNASE HYDROLASE) protein domain (PD018561) which is seen in MANB_CAEEL.Residues 494-675 are 38% similar to a (BETA-MANNOSIDASE PRECURSOR MANNANASE MANNASE HYDROLASE) protein domain (PD018562) which is seen in O86597_STRCO.Residues 347-461 are 53% similar to a (BETA-MANNOSIDASE PRECURSOR MANNANASE MANNASE HYDROLASE) protein domain (PD014562) which is seen in MANB_BOVIN.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Dec 19 09:32:34 MST 2000","Mon Dec 18 10:47:12 MST 2000","Mon Dec 18 10:47:12 MST 2000","","Mon Apr 23 15:16:10 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 196-477 are 22% similar to PG0598, a predicted beta-galactosidase.","Tue Dec 19 14:08:47 MST 2000","Mon Apr 23 15:16:10 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Apr 23 15:16:10 2001","34539908","","","","","","1","","","PG0032" "PG0029","41630","40335","1296","ATGGATTTGTACTGGCTAATCATCATCGTCGCAATAGTTGCCGGACTCGTCGTATGGCTCTTCCATCGCAGGCACAACACTGAGACAGATAGGCTGACAGCACAACTGGAGGCTGCCACTGAGAAGCTGGCGGATCTGCAAGAGGAGCAGAAAGAAGCCATCCGTATTCGTACCGAACTGGAGACACGCTTGCAGGCAACCACTTCCGAATTGGAACGCGAATGGAAACGCTCCGGACAAATATCCGAAGAGATGCAAGCACTCTTCAAGGCCACGGCATCGGAGATCCTCGAAGACAAGACACGGAAGCTTTCCGGAATGAACGAAGAGCGCATCGGTGAAATACTCAAACCGCTGAGTGAACACATCAAGCTATTCGAAGAAAAAGTCGAAAAGAGCTATAATGAAGAAGCGCGCGAACGTTTCTCTCTCGCCAAAGAGCTACAAAAGCTCATCGAACAGAACAGCCGACTCAGCGATGATGCCAACAACCTGACCCGTGCACTCAAAGGCGACCCCAAAGTACAGGGCGACTGGGGCGAAATGATCCTCGAAAACCTGCTCCGACGCAGCGGCTTGACCGAAGGAGAAGAGTTCTTCATCCAAGAGACCCTGACCAATGATGAAGGGCGTACCCTCCTCCACGATGAGACGGGCAGACGGATGCGTCCCGATGTGATCGTTCGCTACCCGAACGGTCAGGAGGTGATCATCGACAGCAAGGTATCCCTTACGGCCTATGCCTCCTTCGTTGCCTCTGAGGATGAAGCCGAGCGCAAACGACTGCTGGGGGAGCACATCGCCAGCATCAGCCGGCATATAGAGGAACTGGCAAGCAAAAGTTATCAGGACTATTGCGACAAAGCTCCCGAATTTGTGATGCTCTTCATCCCGAACGAACCGGCTTATACGCTGGCTCTGCGAGAAAAACCCACCTTATGGGATCAGGCCTACAACAAACGCGTGCTGCTCATGAATCCGACCAACCTGATCGCAGCTTTGCGGATGGCTCTGGATCTATGGCAGCGCGACCGGCAAGTGAAAAATGTGCAGCGAATCGTAGAGCAAGCCAACGGGCTGTACGATAAGTTCTGCACTTTCGCAGAGACACTCATTCGTGCCGAGGAACAAGCCCAAAATACGGTTGCCACGCTTGCCAAAGCCCGCGGTCAATTGGTCGAAGGCCGTAGCAACATCGTCGGGCGTATCGAAAAGATGCGCAGCCTCGGACTTTCGCCCAAAAAGAATGTACCGGCATCGTTCCGTCCTGAGACGGAGGAGTTGCCGGGAAACGAA","5.20","-10.57","49674","MDLYWLIIIVAIVAGLVVWLFHRRHNTETDRLTAQLEAATEKLADLQEEQKEAIRIRTELETRLQATTSELEREWKRSGQISEEMQALFKATASEILEDKTRKLSGMNEERIGEILKPLSEHIKLFEEKVEKSYNEEARERFSLAKELQKLIEQNSRLSDDANNLTRALKGDPKVQGDWGEMILENLLRRSGLTEGEEFFIQETLTNDEGRTLLHDETGRRMRPDVIVRYPNGQEVIIDSKVSLTAYASFVASEDEAERKRLLGEHIASISRHIEELASKSYQDYCDKAPEFVMLFIPNEPAYTLALREKPTLWDQAYNKRVLLMNPTNLIAALRMALDLWQRDRQVKNVQRIVEQANGLYDKFCTFAETLIRAEEQAQNTVATLAKARGQLVEGRSNIVGRIEKMRSLGLSPKKNVPASFRPETEELPGNE","41705 40335","TIGR ID: PG0033","conserved hypothetical protein","Cytoplasm, Inner membrane","Numerous significant hits in gapped BLAST to conserved hypothetical proteins; e.g., residues 38-417 are 38% similar to a conserved hypothetical protein from Neisseria meningitidis (gi: 7227312), residues 19-421 are 35% similar to a conserved hypothetical protein (AE004535) from Pseudomonas aeruginosa, residues 9-417 are 32% similar to hypothetical protein (AE005614) from Escherichia coli (gi: 421110).This protein is similar to CT825, a conserved hypothetical protein from Chlamydia trachomatis.","
InterPro
IPR003798
Domain
RmuC
PF02646\"[109-420]TRmuC


","BeTs to 3 clades of COG1322COG name: Uncharacterized BCR, YigN familyFunctional Class: SThe phylogenetic pattern of COG1322 is --------e--h------inxNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 89-417 are 36% similar to a (PROTEIN YIGN FAMILY UDP-UBIE INTERGENIC REGION PRECURSOR) protein domain (PD041459) which is seen in YIGN_ECOLI.","","Tue Jun 12 15:21:05 MDT 2001","","Tue Jun 12 15:21:05 MDT 2001","Tue Jun 12 15:21:05 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Tue Jun 12 15:21:05 MDT 2001","Tue Jun 12 15:21:05 MDT 2001","","","Thu Mar 30 16:21:27 MST 2000","Tue Jun 12 15:40:23 MDT 2001","Tue Jun 12 15:21:05 MDT 2001","","Tue Jun 12 15:21:05 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Fri Apr 7 13:02:52 MDT 2000","Tue Jun 12 15:21:05 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 109 to 420 (E-value = 6.2e-88) place PG0029 in the RmuC family which is described as RmuC family (PF02646)","Tue Jun 12 15:21:05 MDT 2001","34539909","","","","","","1","","","PG0033" "PG0030","42639","42328","312","ATGGCACTGCAAATTACAGATGCAACATTTGACGGCTTGGTAGCTGAAGGCAAGCCGATGGTAGTGGATTTCTGGGCTACATGGTGCGGTCCTTGCCGCATGGTAGGTCCGATCATCGACGAGCTGGCTGCGGAATATGAAGGACGCGCTATCATAGGAAAAGTGGATGTGGATGCAAATACGGAATTGCCCATGAAGTATGGCGTGCGTAATATCCCCACCATTTTGTTCATCAAGAACGGCGAAGTGGTAAAGAAGCTCGTGGGTGCTCAGTCCAAAGACGTATTCAAGAAAGAATTGGATGCCTTGTTT","4.70","-3.10","11416","MALQITDATFDGLVAEGKPMVVDFWATWCGPCRMVGPIIDELAAEYEGRAIIGKVDVDANTELPMKYGVRNIPTILFIKNGEVVKKLVGAQSKDVFKKELDALF","thioredoxin","Thioredoxin (TRX) is involved in several redoxreactions. See Rockey et al. Microbiol. 142:945(1996). See CT099. From Prosite PDOC00172: Thioredoxins are small proteins of approximatelyone hundred amino-acid residues which participatein various redox reactions via the reversibleoxidation of an active center disulfide bond. Theyexist in either a reduced form or an oxidized formwhere the two cysteine residues are linked in anintramolecular disulfide bond. Thioredoxin ispresent in prokaryotes and eukaryotes and thesequence around the redox-active disulfide bond iswell conserved. Bacteriophage T4 also encodes fora thioredoxin but its primary structure is nothomologous to bacterial, plant and vertebratethioredoxins. TIGR ID: PG0034","thioredoxin","Cytoplasm, Periplasm","Numerous significant hits in gapped BLAST to thioredoxin proteins; e.g. residues 3-103 are 51% similar to the thioredoxin (trxA) of Helicobacter pylori 26695 (AE000594), residues 3-101 are 50% similar to the thioredoxin of Staphylococcus aureus (AJ223480), residues 3-102 are 50% similar to the thioredoxin of Escherichia coli (K02845).This sequence is similar to CT539 of Chlamydia trachomatis.","
InterPro
IPR005746
Family
Thioredoxin
TIGR01068\"[5-104]Tthioredoxin
InterPro
IPR006662
Domain
Thioredoxin-related
PR00421\"[20-28]T\"[28-37]T\"[68-79]TTHIOREDOXIN
PS00194\"[21-39]TTHIOREDOXIN
InterPro
IPR012335
Domain
Thioredoxin fold
G3DSA:3.40.30.10\"[3-104]TThioredoxin_fold
InterPro
IPR012336
Domain
Thioredoxin-like fold
SSF52833\"[1-104]TIPR012336
InterPro
IPR013766
Domain
Thioredoxin domain
PF00085\"[1-103]TThioredoxin
InterPro
IPR015467
Domain
Thioredoxin family
PTHR10438\"[18-104]TTrx
noIPR
unintegrated
unintegrated
PTHR10438:SF13\"[18-104]TPTHR10438:SF13


","BeTs to 15 clades of COG0526COG name: Thiol-disulfide isomerase and thioredoxinsFunctional Class: O,CThe phylogenetic pattern of COG0526 is AMTkYQVCEBRHUJgpoLINXNumber of proteins in this genome belonging to this COG is 7","***** IPB000063 (Thioredoxin family) with a combined E-value of 3.4e-10. IPB000063 21-33","Residues 3-69 are 55% similar to a (REDOX-ACTIVE CENTER PROTEIN ISOMERASE PRECURSOR) protein domain (PD000175) which is seen in Q9ZEH4_STAAU.Residues 5-90 are 31% similar to a (PROTEIN THIOREDOXIN PUTATIVE INTERGENIC) protein domain (PD012637) which is seen in Q9ZPH2_ARATH.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","Wed Mar 22 14:58:27 MST 2000","Wed Mar 22 14:58:27 MST 2000","Wed Mar 22 14:58:27 MST 2000","Tue Dec 19 14:01:03 MST 2000","Tue Dec 19 14:01:03 MST 2000","Wed Mar 28 15:07:35 MST 2001","Wed Mar 28 15:07:35 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 18-78 are 49% similar to PG0246, thioredoxin. Residues 14-348 are 33% similar to PG1431, cytochrome c biogenesis protein and residues 14-362 are 31% similar to PG0966, a probable cytochrome c biogenesis protein.","Wed Mar 28 15:07:35 MST 2001","Wed Mar 28 15:07:35 MST 2001","-69% similar to PDB:1ZZY Crystal Structure of Thioredoxin Mutant L7V (E_value = 1.4E_24);-70% similar to PDB:2FCH Crystal Structure of Thioredoxin Mutant G74S (E_value = 1.4E_24);-69% similar to PDB:1SKR T7 DNA Polymerase Complexed To DNA Primer/Template and ddATP (E_value = 1.9E_24);-69% similar to PDB:1SKS Binary 3' complex of T7 DNA polymerase with a DNA primer/template containing a cis-syn thymine dimer on the template (E_value = 1.9E_24);-69% similar to PDB:1SKW Binary 3' complex of T7 DNA polymerase with a DNA primer/template containing a disordered cis-syn thymine dimer on the template (E_value = 1.9E_24);","","","Residues 1 to 104 (E-value = 1.9e-38) place PG0030 in the Thioredoxin family which is described as Thioredoxin (PF00085)","Wed Mar 28 15:07:35 MST 2001","34539910","","","","","","1","","","PG0034" "PG0031","46374","42691","3684","ATGGAACCCTTCGTACACCTGCACGTACACTCCCAATTCTCTCTGCTTGACGGACAGGCCGCTATCAATGACTTGGTGGACAAAGCCATTGCCGACGGTATGCCGGGTATTGCTCTGACCGATCATGGAGCCATGTTCGGCATCAAGGAGTTTTACAACTATGTGGAGAAGAAGAACAGCGGGCACAATGCGACATTGAAGGACTGTAGGCGCGAACTGGATCAACTGAACGACTCGAAGAGTGCCGACATGCTGACCGATGAAGAGCGCAACCGCATTGTCAAGTTGCAGCAGAAGATAGAGGAGACCAAAAAACTCCTCTTCAAACCTATCCTTGGGTGTGAGGCATATTGTGCTCGACGTACGCGATTCGACAAGGATAACCAGATACCGGATCCGTATCATCCCAGACGCTCCATCGATGCCAGCGGTTGGCACTTGATCCTGCTGGCAAAAAACTTGCGAGGGTACAAGAATCTGATCAAAATGGTCAGCTATTCATGGACAGAAGGACAGTACTACCGTCCGCGTATCGACAAGGAGCTTTTGCAGAAGTATCATGAAGGTATCATTGTCTCTTCGGCCTGCCTGGGAGGAGAGATACCACAGCATATCATGGCAGGAGAGATTGCCAAGGCTGAGGAGGCCATCCTCTGGTTCAAAGAGCTTTTTGGGGACGATTACTATTTGGAGATTCAGCGACACGAGACGCATAATCCACTCGGCAATCAGGATGTTTTCCCCCAGCAACAGCGCGTAAATCGCGTCATACTGGAGCTTGGCAAGAAGTTGGGCGTCAAAGTTATTGCGACGAACGATGTCCATTTCTGCAATGAAGAAGATGCTGAGGCGCACGACCGTCTGATCTGTCTGAGCACAGGGAAGGATCTGGACGATCCGAACAGGATGCGCTATACCAAGCAGGAATGGATGAAGACTACGGCAGAGATGAGCGCCATATTCGAGGATCTACCTGAGACTCTTTCCAACACATTAGAAATACTTGACAAGGTAGAGTTATACAGCATCGACAACAAAGCCCTGATGCCGGACTTTCCTATCCCCCCCGAATATAAAGACGATGATGACTACCTGCGTTTCCTTACCTACGAAGGGGCCAGGCGCAAGTATGGAGAGGATCTTTCCGATGAGATAAAAGAGCGTATCGACTTTGAACTGGAAACCATCAAAGGAATGGGGTTCCCCGGCTACTTCCTTATTGTACAGGATTTCATTGCAGCCGCACGAAGTATGGGCGTCTCTGTCGGACCCGGCCGAGGATCGGCAGCCGGTTCGGCGGTAGCTTACTGTTTGGGGATCACGGATATCGATCCGATCAAGTACCATTTGCTTTTCGAGCGTTTTCTCAATCCGGATCGTATCTCCATGCCCGATATAGACGTCGACTTCGATGATGACGGGCGTGCCGAAATACTCCGCTGGGTGACGGAAAAATACGGCAAGGAGAGAGTGGCCCACATCATCACCTACGGTACGATGGCCACAAAGAGTTCTATTAAGGATGTGGCTCGCGTACAGAGGCTGCCCTTACTCGAAAGCAATCGTTTAGCCAAGCTCGTACCAGACAAAATTCCCGGAGAGAAGAAAGTCAATCTGAAGAAAGCAATCGAATTTGTTCCAGAGCTGAAGCAAGCATCGCTAAGCTCCGATAAGGTAATGCGCGATACCCTGAAATACGCCCAAATGCTGGAGGGGAATGTGCGCAATACAGGTGTGCATGCCTGCGGTATCATCATTGGGAAAACGGATATCAGCGATGTCGTTCCGGTCAGTACGGCTCCCGACAAAGACACGAAGGAGGAGCTGCTGGTCACACAATACGAAGGCTCTGTCATCGAACAGACGGGACTGATCAAAATGGACTTCCTCGGGCTGAAAACGCTCTCGATCATCAAAGAAGCTTTGGTCAACATAAAGCGGCGCCATGGCATTGACTTGAATATAGACACGATCCCTCTCGACGATCCTCTTACATATAAGCTATACAGCGATGGACGTACCATAGGTACTTTCCAATTCGAATCCGGTGGGATGCAAAAGTATCTTAGGGAGCTACAGCCCTCTGCTTTCGAGGACTTGATAGCGATGAATGCTCTCTATCGTCCCGGTCCGATGGACTATATCCCTTCTTTTATCGCACGCAAGCATGGGCGTGAGCCTATCGATTACGACCTGCCTGAGATGGAAGAATATCTCAAAGAAACTTATGGTGTGACGGTGTATCAGGAGCAAGTCATGCTTCTGAGTCGCAAGCTTGCCGGTTTTACCCGAGGCCAGAGCGATGAGCTTCGTAAGGCTATGGGCAAAAAACTCATCGAAAAGATGAATGTTCTGAAGGTGAAGTTTCTCGAGGGGGGGAATAAGAATGGACATCCGGAAGAAGTTCTGGAAAAGATCTGGACAGACTGGGAGAAGTTCGCCAGCTATGCTTTCAACAAGAGTCATGCCACCTGCTACAGTTGGGTAGCCTACCAAACGGCTTACCTGAAAGCAAACTATCCTGCTGAATATATGGCAGGAGCATTGAGCCGAAACCTGAATAACATCACGGAAATAACCAAGCTCATGGATGAGTGCAAGTCCATGAAGATCGGCGTATTGGTACCGGATGTGAACGAGTCCGAAATGAAATTCTCAGTAAATGCCAATGGGGATATTCGGTTCGGTCTCAGCGCTGTAAAGGGTGTAGGATCGGGAGCCGTGGAGCAGATCATTGCCGAACGCGAAGCCAACGGGCTATATAAGGACATCTTCGACTTTGTGGAGCGGATCAATCTCTCTGCCTGCAATCGCAAGACGATGGAGAGTCTGGCCTTGGCCGGTGCTTTCGACAGCTTCGCTCTATCCCGGGAGGAATATATGGCTCCTCCTCTGACAGGAAGAGAGGAGTCATACATACAAGCACTTATGCGCTATGGGTCCGTAGTACAAGAGGAGAAGCACAGCCAGAGCAATTCCCTCTTCGGAGAGGAAGAAGATCTGATGATTCCTCGTCCGCAGCCATCTCCCACCGAGCCATGGAACGACTTGGAAAGGCTCAATAAAGAACGTGAACTCGTAGGGCTCTACCTTAGTTCCAATCCAATGGCTCAGTACCAAGTCATTCTCGATCACTATTGCAATACCCATGCAGCCGATTTGACCGATCCGGATTCCTTGGTCGGGAAAAATTTGGTTTTGGCCGGTATTGTTACCAAGGCTTTTCAGGGAATCTCTCGCTCGAATAATCCGTACTCAAAGATTACGTTAGAGGATCTGTCCGGCACGGGCGAAATACCTCTTTTCGGACAGGCTCATGTAAACTTCGGCAATTATTGCAAGGAGGGGCTGTATCTCCTCATTCGCGCATCCGTTCAGCCTCATAAGTGGAAAGAGGGTGAAATGGAATTGGTCGTGACCTCAATCGAACTGCTACCTCAAGTGGCCGATACATTGATCAAAAAGATGACGATCCTACTGCCGGCATCGAAGATCGACAATGAGCTGATCGAAATGCTGTCTGACGAATTGACAAACAATTCGGGGAAAACGATGTTATTTATCAAAGTGTATGACCATACGGAGACTTTCGATGTCGAACTGGCACAGCAGAAATCGCTGATCAAAGTGTCCCCCGAACTGGTGAATAGATTGAAGACTTATGAGATTAACTTTGCACTTGAA","5.20","-32.17","139199","MEPFVHLHVHSQFSLLDGQAAINDLVDKAIADGMPGIALTDHGAMFGIKEFYNYVEKKNSGHNATLKDCRRELDQLNDSKSADMLTDEERNRIVKLQQKIEETKKLLFKPILGCEAYCARRTRFDKDNQIPDPYHPRRSIDASGWHLILLAKNLRGYKNLIKMVSYSWTEGQYYRPRIDKELLQKYHEGIIVSSACLGGEIPQHIMAGEIAKAEEAILWFKELFGDDYYLEIQRHETHNPLGNQDVFPQQQRVNRVILELGKKLGVKVIATNDVHFCNEEDAEAHDRLICLSTGKDLDDPNRMRYTKQEWMKTTAEMSAIFEDLPETLSNTLEILDKVELYSIDNKALMPDFPIPPEYKDDDDYLRFLTYEGARRKYGEDLSDEIKERIDFELETIKGMGFPGYFLIVQDFIAAARSMGVSVGPGRGSAAGSAVAYCLGITDIDPIKYHLLFERFLNPDRISMPDIDVDFDDDGRAEILRWVTEKYGKERVAHIITYGTMATKSSIKDVARVQRLPLLESNRLAKLVPDKIPGEKKVNLKKAIEFVPELKQASLSSDKVMRDTLKYAQMLEGNVRNTGVHACGIIIGKTDISDVVPVSTAPDKDTKEELLVTQYEGSVIEQTGLIKMDFLGLKTLSIIKEALVNIKRRHGIDLNIDTIPLDDPLTYKLYSDGRTIGTFQFESGGMQKYLRELQPSAFEDLIAMNALYRPGPMDYIPSFIARKHGREPIDYDLPEMEEYLKETYGVTVYQEQVMLLSRKLAGFTRGQSDELRKAMGKKLIEKMNVLKVKFLEGGNKNGHPEEVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPAEYMAGALSRNLNNITEITKLMDECKSMKIGVLVPDVNESEMKFSVNANGDIRFGLSAVKGVGSGAVEQIIAEREANGLYKDIFDFVERINLSACNRKTMESLALAGAFDSFALSREEYMAPPLTGREESYIQALMRYGSVVQEEKHSQSNSLFGEEEDLMIPRPQPSPTEPWNDLERLNKERELVGLYLSSNPMAQYQVILDHYCNTHAADLTDPDSLVGKNLVLAGIVTKAFQGISRSNNPYSKITLEDLSGTGEIPLFGQAHVNFGNYCKEGLYLLIRASVQPHKWKEGEMELVVTSIELLPQVADTLIKKMTILLPASKIDNELIEMLSDELTNNSGKTMLFIKVYDHTETFDVELAQQKSLIKVSPELVNRLKTYEINFALE","DNA polymerase III alpha chain","The alpha chain is responsible for the polymeraseactivity of the multichain enzyme. Other subunits -- PG1614, PG1615, PG1245 -- perform 3' to 5' exonucleolytic activity.For other pol III subunit sequences see PG0831, PG1614, PG1615, and PG1245.TIGR ID: PG0035","DNA polymerase III alpha subunit","Cytoplasm","Numerous significant hits in gapped BLAST to DNA polymerase III; e.g. residues 4-1201 are 39% similar to DNA polymerase III, alpha chain of Borrelia burgdorferi (AE001159) , residues 4-1190 are 36% similar to the DNA polymerase III of Thermus aquaticus (AF062920), residues 4-1180 are 36% similar to the DNA polymerase III alpha subunit of Aquifex aeolicus (AE000718).This sequence is similar to CT545 and BT2230.","
InterPro
IPR001610
Repeat
PAC motif
SM00086\"[1106-1148]TPAC
InterPro
IPR003141
Domain
Polymerase and histidinol phosphatase, N-terminal
SM00481\"[5-120]TPOLIIIAc
InterPro
IPR004013
Domain
PHP, C-terminal
PF02811\"[5-278]TPHP
InterPro
IPR004365
Domain
Nucleic acid binding, OB-fold, tRNA/helicase-type
PF01336\"[1065-1145]TtRNA_anti
InterPro
IPR004805
Family
DNA polymerase III, alpha subunit
TIGR00594\"[4-1102]Tpolc
InterPro
IPR011708
Domain
Bacterial DNA polymerase III, alpha subunit
PF07733\"[309-797]TDNA_pol3_alpha
noIPR
unintegrated
unintegrated
SSF89550\"[3-324]TSSF89550


","BeTs to 12 clades of COG0587COG name: DNA-dependent DNA polymerase III alpha chainFunctional Class: LThe phylogenetic pattern of COG0587 is -----qvCeBRhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** BP01693 (DNA POLYMERASE PROTEIN III ALP) with a combined E-value of 2.3e-19. BP01693 422-465","Residues 454-807 are 47% similar to a (DNA POLYMERASE III ALPHA) protein domain (PD004180) which is seen in DP3A_BORBU.Residues 813-1191 are 32% similar to a (DNA POLYMERASE III ALPHA) protein domain (PD004426) which is seen in DP3A_HAEIN.Residues 145-415 are 46% similar to a (DNA POLYMERASE ALPHA III) protein domain (PD003212) which is seen in DP3A_BORBU.Residues 423-453 are 83% similar to a (DNA III POLYMERASE ALPHA) protein domain (PD005473) which is seen in DP3A_BACSU.Residues 4-57 are 55% similar to a (DNA POLYMERASE ALPHA PROTEIN) protein domain (PD001693) which is seen in DP3A_BORBU.","","Tue Jun 12 15:45:18 MDT 2001","","Tue Jun 12 15:45:18 MDT 2001","Tue Jun 12 15:45:18 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Tue Jun 12 15:45:18 MDT 2001","Tue Jun 12 15:45:18 MDT 2001","Wed Mar 22 15:09:27 MST 2000","Fri Jun 11 10:28:33 2004","Wed May 23 16:49:23 MDT 2001","Wed Dec 10 16:59:36 2003","Tue Mar 26 15:05:39 2002","Tue Mar 26 15:05:39 2002","Tue Mar 26 15:05:39 2002","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Mon Apr 10 10:44:33 MDT 2000","Wed May 23 16:49:23 MDT 2001","-56% similar to PDB:2HPI Eubacterial and Eukaryotic Replicative DNA Polymerases are not Homologous: X-ray Structure of DNA Polymerase III (E_value = );-56% similar to PDB:2HPM Eubacterial and Eukaryotic Replicative DNA Polymerases are not Homologous: X-ray Structure of DNA Polymerase III (E_value = );-60% similar to PDB:2HNH Crystal structure of the catalytic alpha subunit of E. coli replicative DNA polymerase III (E_value = 1.1E_167);-60% similar to PDB:2HQA Crystal structure of the catalytic alpha subunit of E. Coli replicative DNA polymerase III (E_value = 1.1E_167);","","","Residues 5 to 66 (E-value = 4.7e-22) place PG0031 in the PHP_N family which is described as PHP domain N-terminal region (PF02231)Residues 143 to 283 (E-value = 3.6e-31) place PG0031 in the PHP_C family which is described as PHP domain C-terminal region (PF02811)","Wed Dec 10 16:59:36 2003","34539911","","","","","","1","","","PG0035" "PG0032","46659","47021","363","ATGGATTTTATTAAAATCGTTAACGAAGAGTTCAAATCAGGGAAAGAACATCCCAAGTTTAACAGCGGTGACACCATCACTGTTGAATATCGTATCAAGGAGGGTAACAAGGAGCGTATCCAGAAGTATCGCGGTGTAGTAATACGCATCAGCGGCCACGGCGACAAGAAGCGATTCACTGTTCGCAAAATATCGGACGGTATCGGTGTAGAGCGTATTTTCCCGATCGAAAGCCCTTTCATCGAAAACATTACCGTTGAGAAGTATGGTAAGGTACGTCGAGCCAAACTATATTACCTGCGTGGCCTTACAGGCAAGAAAGCCCGTATCAAAGAGCGTCGCGTAGCTCTTTCTTCTAAAGAC","11.00","14.47","14072","MDFIKIVNEEFKSGKEHPKFNSGDTITVEYRIKEGNKERIQKYRGVVIRISGHGDKKRFTVRKISDGIGVERIFPIESPFIENITVEKYGKVRRAKLYYLRGLTGKKARIKERRVALSSKD","46659 47021","TIGR ID: PG0037","50S ribosomal protein L19","Cytoplasm","Numerous significant hits in gapped BLAST to ribosomal protein L19 sequences; e.g. residues 2-117 are 53% similar to the ribosomal protein L19 of Aquifex aeolicus (AE000765), residues 15-121 are 56% similar to the ribosomal protein L19 of Deinococcus radiodurans (AE001931), residues 18-114 are 59% similar to the ribosomal protein L19 of Streptococcus thermophilus (U88973).","
InterPro
IPR001857
Family
Ribosomal protein L19
PD002979\"[23-101]TRibosomal_L19
PR00061\"[4-33]T\"[34-63]T\"[88-113]TRIBOSOMALL19
PTHR15680\"[9-115]TRibosomal_L19
PF01245\"[1-114]TRibosomal_L19
TIGR01024\"[1-114]TrplS_bact
PS01015\"[86-101]TRIBOSOMAL_L19


","BeTs to 12 clades of COG0335COG name: Ribosomal protein L19Functional Class: JThe phylogenetic pattern of COG0335 is ----yqvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB001857 (Ribosomal protein L19) with a combined E-value of 2.7e-43. IPB001857A 18-63 IPB001857B 74-112","Residues 4-112 are 56% similar to a (PROTEIN RIBOSOMAL L19 50S) protein domain (PD002979) which is seen in RL19_AQUAE.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Mar 21 16:39:49 MST 2000","Tue Dec 19 15:21:58 MST 2000","Tue Dec 19 15:21:58 MST 2000","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Mon Apr 10 10:48:54 MDT 2000","","-72% similar to PDB:1NKW Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans (E_value = 1.9E_27);-72% similar to PDB:1NWX COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH ABT-773 (E_value = 1.9E_27);-72% similar to PDB:1NWY COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN (E_value = 1.9E_27);-72% similar to PDB:1PNU Crystal Structure of a Streptomycin Dependent Ribosome from Escherichia Coli, 50S Subunit of 70S Ribosome. THIS FILE, 1PNU, CONTAINS ONLY MOLECULES OF THE 50S RIBOSOMAL SUBUNIT. THE 30S SUBUNIT, MRNA, P-SITE TRNA, AND A-SITE TRNA ARE IN THE PDB FILE 1PNS. (E_value = 1.9E_27);-72% similar to PDB:1PNY Crystal Structure of the Wild Type Ribosome from E. Coli, 50S Subunit of 70S Ribosome. THIS FILE, 1PNY, CONTAINS ONLY MOLECULES OF THE 50S RIBOSOMAL SUBUNIT. THE 30S SUBUNIT IS IN THE PDB FILE 1PNX. (E_value = 1.9E_27);","","","Residues 1 to 114 (E-value = 6.6e-42) place PG0032 in the Ribosomal_L19 family which is described as Ribosomal protein L19 (PF01245)","","34539912","","","","","","1","","","PG0037" "PG0033","48074","48460","387","TTGGGCGGGATGCAACCAGTATCCATTATGGGCAAACATTTAAACAACTTTGAACGCCTTAGCATCCTTGAGGATTACCTCTCGGGGTCAGATAGCAAAGTAGCCATTGAGCAGAAATATGGTCTAAGTCATGGTCTCATTCGCTCTTGGCTTAGTAAATTTGGACTCGAAGATAAAGTTCATCCAGTCCCAATGAAAGTGTCCCAATCCCCCCAGAGTGAGCTACCCCTGAACGAAAAAGAAGAGTTAGAGCAGCTACGTAAAGAAAATCGTGTCCTCAAGAGTCGTCTCAAGCGAGAAGAACTAGGGCATCAAGCCTACAAGCTACTTGTAGAGTTGGCAGAAGAAACCTACGGCATTCAGATACGAAAAAACTCCGAAGCCAAG","9.00","1.96","14755","LGGMQPVSIMGKHLNNFERLSILEDYLSGSDSKVAIEQKYGLSHGLIRSWLSKFGLEDKVHPVPMKVSQSPQSELPLNEKEELEQLRKENRVLKSRLKREELGHQAYKLLVELAEETYGIQIRKNSEAK","48074 48460","See PG0034 for associated transposase.Member of the IS3 family of insertion elements.TIGR ID: PG0040","ISPg5-related orf-1","Cytoplasm","PG0033 is equivalent to the previously reported gb|AAF69127.1 in GenBANK.Otherwise, no significant hits in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Fri Feb 9 17:20:35 MST 2001","Fri Feb 9 17:20:35 MST 2001","Fri Feb 9 17:20:35 MST 2001","Tue Dec 19 15:25:11 MST 2000","","","yes","Fri Feb 20 15:41:32 MST 1998","PG0033 is paralogously related to PG1862, PG1797, PG1490, PG1437, PG0008, PG0532, PG0392, PG1246, PG0840 and PG0419, all ORFs associated with ISPg5 transposases. ","Wed Mar 28 15:09:58 MST 2001","Fri Feb 9 17:20:35 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Mar 28 15:09:58 MST 2001","34539914","","Califano,J.V., Kitten,T., Lewis,J.P., Macrina,F.L.,Fleischmann,R.D., Fraser,C.M., Duncan,M.J. and Dewhirst,F.E.Characterization of Porphyromonas gingivalis insertionsequence-like element ISPg5.Infect. Immun. 68 (9), 5247-5253 (2000)20407340","","Fri Feb 9 17:20:35 MST 2001","","1","","20","PG0040" "PG0034","48517","49452","936","CTGCTTGGCTTTAGCCGTCAGGCCTTTTATAAACGTCATCTCAACGATTTAGCTAGGCACGAGGAGGATGTCCTATGCAGTAGTATCATCCAATATTGTTGGCACTTAAGACAAGCAGAGCACCTACCTCAAGCCGGCTTCCGAGAGCTCATGGTGCTTTGTCAGCAATACTTCGGCCCCAAGTTCACGCTTGGGCGCGATCGCTTTTGCGCCCTACTCAGACGCCATGGTATGATGCTGCGCAAACGGTCTGTGCGCCCTCGGACAACCAACTCTCGGCATAGGCTCTACAAGTATGAAGACCTGCTCAATACAGAGCCTAAGTTTGTGCCTCAAAGACCTGGGGAACTCCTTGTAGCAGACATCACCTACGTGGCTTACCAAGATGGGTTTGCCTATCTCTCCCTACTGACCGATGCCTATAGTCGCTGTATCGTAGGGTATTGCTTACATCCTACCCTAGAGGTTGAAGGCTGTTTGAATGCTCTACATCAAGCCTTTGCTTTCTACGATCAGCATCAAATTGATACGAGCAATATGATTCATCATAGCGACCGAGGCATTCAGTATGCCGGTAAGAGCTACACCGATCTGTTGCATGGGCGAGGCTGGCGCATCAGCATGACTCAGACGGGAGATCCTCTGCATAATGCATTGGCTGAGCGGATGAACAATACGCTCAAGAACTCGTGGCACATCTCCTCTTCGAAGCAGTCTTTTGATCAAGCACTCCTTTCTGTAGAACAAGCCGTGCGCATGTACAACGAGGCGCGTCCACATCAAGCTCTAGGGGCGAAAACGCCTATGCAAGTCATTGCGCCAGAGTCTAAAAATCCGTTACTAACGAGGAGGGAGCATGGGCCAGAGATTGCCCCCGAGCTATACCGAAGGATGAATGTCAGACAAAGAGCTAACTTTGCTCGTGTCAACCGAAAT","10.20","15.52","36274","LLGFSRQAFYKRHLNDLARHEEDVLCSSIIQYCWHLRQAEHLPQAGFRELMVLCQQYFGPKFTLGRDRFCALLRRHGMMLRKRSVRPRTTNSRHRLYKYEDLLNTEPKFVPQRPGELLVADITYVAYQDGFAYLSLLTDAYSRCIVGYCLHPTLEVEGCLNALHQAFAFYDQHQIDTSNMIHHSDRGIQYAGKSYTDLLHGRGWRISMTQTGDPLHNALAERMNNTLKNSWHISSSKQSFDQALLSVEQAVRMYNEARPHQALGAKTPMQVIAPESKNPLLTRREHGPEIAPELYRRMNVRQRANFARVNRN","48667 49452","One of eleven ISPg5 elements in the genome (see Paralogs). Califano et al. report considerable strain diversity of these (Infect. Immun. 68 (9), 5247-5253 (2000)).Member of the IS3 family of insertion elements. See PG0033 for associated ORF.TIGR ID: PG0041","ISPg5 transposase","Cytoplasm","PG0034 is equivalent to the previously reported gb|AAF69128.1| in GenBANK.Numerous significant hits in gapped BLAST to transposase protein; e.g. residues 91-213 are 56% similar to (U67062) transposase homolog of Bacteroides thetaiotaomicron, residues 64-287 are 32% similar to (AF153317) InsB of Shigella dysenteriae, residues 64-268 are 33% similar to (AF081284) Hp1 of Escherichia coli.","
InterPro
IPR001584
Domain
Integrase, catalytic core
PF00665\"[110-273]Trve
PS50994\"[110-276]TINTEGRASE
noIPR
unintegrated
unintegrated
G3DSA:3.30.420.10\"[113-281]Tno description


","No hit to the COGs database.","***** PF01836 (Transposase) with a combined E-value of 4.3e-23. PF01836B 103-154 PF01836C 181-190 PF01836D 215-222 PF01836E 253-272","No significant hit to the ProDom database.","","Tue Jun 12 15:51:47 MDT 2001","","Tue Jun 12 15:51:47 MDT 2001","Tue Jun 12 15:51:47 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Tue Jun 12 15:51:47 MDT 2001","Tue Jun 12 15:51:47 MDT 2001","","Tue Nov 18 15:52:49 2003","Fri Feb 9 16:17:51 MST 2001","Tue Jun 12 15:55:41 MDT 2001","Thu Nov 16 10:49:22 MST 2000","Tue Nov 18 15:52:49 2003","","yes","Fri Feb 20 15:41:32 MST 1998","PG0034 is paralogously related to PG1861, PG1491, PG0391, PG0418, PG1436, PG1796, PG0007, PG0533, PG1247 and PG0841, all ORFs associated with ISPg5 transposases. ","Wed Mar 28 15:11:29 MST 2001","Fri Feb 9 16:17:51 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 110 to 273 (E-value = 8.3e-31) place PG0034 in the rve family which is described as Integrase core domain (PF00665)","Tue Nov 18 15:52:49 2003","34539915","","Califano,J.V., Kitten,T., Lewis,J.P., Macrina,F.L., Fleischmann,R.D., Fraser,C.M.,Duncan,M.J. and Dewhirst,F.E. Characterization of Porphyromonas gingivalis insertionsequence-like element.ISPg5 Infect. Immun. 68 (9), 5247-5253 (2000)","Xu,J., Bjursell,M.K., Himrod,J., Deng,S., Carmichael,L.K.,Chiang,H.C., Hooper,L.V. and Gordon,J.I.A Genomic View of the Human-Bacteroides thetaiotaomicron SymbiosisScience 299 (5615), 2074-2076 (2003)PUBMED 12663928","Thu Nov 16 10:49:22 MST 2000","Tue Nov 18 15:52:49 2003","1","","20","PG0041" "PG0035","49769","51046","1278","ATGAAAAAAGACAGCGTAATTTTCGATCTGATCGAAAAAGAACATCAGCGCCAGCTCAAAGGCATCGAGCTGATCGCATCGGAAAACTTTGTAAGCGAACAAGTTATGCAGGCTATGGGTAGCTGTATGACCAATAAGTATGCCGAAGGTTATCCCGGCAAACGCTATTACGGTGGTTGTGAAGTGGTAGACCAAAGCGAGCAAATCGCCATCGACCGTATCAAACAACTCTACGGAGCCGAATGGGCCAACGTACAGCCTCACTCCGGAGCACAGGCCAATATGGCCGTTCTTCTGGCTTGCCTCGAAGCAGGCGATACGTTCATGGGACTGAACCTCGAACACGGCGGCCACCTATCGCACGGCTCACTCGTCAATAGCTCGGGTATCCTCTACCGTCCCATCGGCTACAATCTGAGCGAAGAGACGGGAATGGTGGATTACGACCACATGGAGAAAATGGCCATCGAGCACAAACCCAAGCTGATCATCGGCGGTGGTTCGGCCTATTCTCGTGAGTGGGACTACAAGCGTATGCGTGAGATCGCTGACAAGGTGGGTGCCTTGTTGATGATCGATATGGCACACCCTGCCGGTCTGATCGCTGCCGGTCTGCTGGAGAACCCCGTGAAGTATGCTCATATCGTTACTTCTACGACTCACAAGACACTGCGTGGCCCCCGTGGCGGTATCATCCTTATGGGCAAGGACTTCGACAATCCTTGGGGCAAGAAAACCCCGAAGGGCGAGATCAAGAAGATGAGCGCACTCCTCGACTCTGCCGTATTCCCCGGTGTACAGGGTGGTCCGCTCGAGCACGTTATAGCTGCTAAGGCTGTAGCTTTCGGAGAAGCACTGGATCCTTCGTTCAAGGAATACCAAACGCAGGTGAAAAAGAATGCTGCCGTTTTGGCTCAGGCTTTCATGGACAAAGGCTATAAAGTGATTTCCGGTGGTACGGACAACCACAGTATGCTGATCGATCTTCGTCCGAAGTTCCCCGAACTGACAGGTAAAGTGGCAGAGAAAGCCCTCGTGGCAGCGGATATTACCGTCAATAAGAACATGGTACCGTTCGATTCTCGCTCTGCATTCCAGACATCGGGCTTCCGCGTGGGTACTCCGGCCATCACCACTCGTGGCGTAAAAGAAGATAAGATGGGCTATATCGTGGAGTTGATAGACCGTGTGCTCTCCGCACCGGAGGACGAAGCCGTAATAGCATCGGTTCGTACCGAAGTCAACCGGATGATGGCCGATTATCCTCTCTTTGCTTGG","6.80","-1.22","46663","MKKDSVIFDLIEKEHQRQLKGIELIASENFVSEQVMQAMGSCMTNKYAEGYPGKRYYGGCEVVDQSEQIAIDRIKQLYGAEWANVQPHSGAQANMAVLLACLEAGDTFMGLNLEHGGHLSHGSLVNSSGILYRPIGYNLSEETGMVDYDHMEKMAIEHKPKLIIGGGSAYSREWDYKRMREIADKVGALLMIDMAHPAGLIAAGLLENPVKYAHIVTSTTHKTLRGPRGGIILMGKDFDNPWGKKTPKGEIKKMSALLDSAVFPGVQGGPLEHVIAAKAVAFGEALDPSFKEYQTQVKKNAAVLAQAFMDKGYKVISGGTDNHSMLIDLRPKFPELTGKVAEKALVAADITVNKNMVPFDSRSAFQTSGFRVGTPAITTRGVKEDKMGYIVELIDRVLSAPEDEAVIASVRTEVNRMMADYPLFAW","49769 51046","TIGR ID: PG0042","serine hydroxymethyltransferase","Cytoplasm","Numerous significant hits in gapped BLAST to serine hydroxymethyltransferase; e.g. residues 1-424 are 57% similar to (AE000692) serine hydroxymethyl transferase of Aquifex aeolicus, residues 4-424 are 56% similar to (AE001743) serine hydroxymethyltransferase of Thermotoga maritima, residues 4-425 are 57% similar to (J01620) serine hydroxymethyltransferase of Escherichia coli.This sequence is similar to BT0738.","
InterPro
IPR001085
Family
Glycine hydroxymethyltransferase
PIRSF000412\"[1-426]TSHMT
PTHR11680\"[2-426]TGly_HO-Metrfase
PF00464\"[1-394]TSHMT
PS00096\"[214-230]TSHMT
InterPro
IPR015421
Domain
Pyridoxal phosphate-dependent transferase, major region, subdomain 1
G3DSA:3.40.640.10\"[29-295]TPyrdxlP-dep_Trfase_major_sub1
InterPro
IPR015424
Domain
Pyridoxal phosphate-dependent transferase, major region
SSF53383\"[2-424]TPyrdxlP-dep_Trfase_major


","BeTs to 17 clades of COG0112COG name: Glycine hydroxymethyltransferaseFunctional Class: EThe phylogenetic pattern of COG0112 is amtkYqvcebRhujgpolinxNumber of proteins in this genome belonging to this COG is 2","***** IPB001085 (Serine hydroxymethyltransferase (SHMT)) with a combined E-value of 6.2e-147. IPB001085A 22-74 IPB001085B 93-118 IPB001085C 143-174 IPB001085D 175-218 IPB001085E 257-293 IPB001085F 328-360 IPB001085G 367-387","Residues 4-387 are 59% similar to a (HYDROXYMETHYLTRANSFERASE SERINE TRANSFERASE METHYLASE) protein domain (PD001547) which is seen in GLYA_AQUAE.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Mar 22 14:21:56 MST 2000","Wed Dec 3 09:07:49 2003","Tue Jan 2 16:19:34 MST 2001","Mon May 21 17:53:31 MDT 2001","Mon May 21 17:53:31 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Mon Apr 10 12:18:42 MDT 2000","Mon May 21 17:53:31 MDT 2001","-72% similar to PDB:1DFO CRYSTAL STRUCTURE AT 2.4 ANGSTROM RESOLUTION OF E. COLI SERINE HYDROXYMETHYLTRANSFERASE IN COMPLEX WITH GLYCINE AND 5-FORMYL TETRAHYDROFOLATE (E_value = 5.0E_130);-72% similar to PDB:1EQB X-RAY CRYSTAL STRUCTURE AT 2.7 ANGSTROMS RESOLUTION OF TERNARY COMPLEX BETWEEN THE Y65F MUTANT OF E-COLI SERINE HYDROXYMETHYLTRANSFERASE, GLYCINE AND 5-FORMYL TETRAHYDROFOLATE (E_value = 1.5E_129);-69% similar to PDB:1KKJ Crystal Structure of Serine Hydroxymethyltransferase from B.stearothermophilus (E_value = 1.7E_125);-69% similar to PDB:1KKP Crystal Structure of Serine Hydroxymethyltransferase complexed with Serine (E_value = 1.7E_125);-69% similar to PDB:1KL1 Crystal Structure of Serine Hydroxymethyltransferase Complexed with Glycine (E_value = 1.7E_125);","","","Residues 1 to 394 (E-value = 5.2e-233) place PG0035 in the SHMT family which is described as Serine hydroxymethyltransferase (PF00464)","Mon May 21 17:53:31 MDT 2001","34539916","","","","","","1","","20","PG0042" "PG0036","51206","53536","2331","ATGAAACGACTGACTTTCGGAGCATGCATTTGCTGCCTCCTGTCTCTTATGGCCTGCTCACAGAAAGCAAAGCAGGTGCAAATCCCCGAATACGACAAGGGTATAAACATCATTCCCTTGCCGATGCAGCTGACCGAATCGGACGACAGCTTTGAGGTCGATGATAAGACCACTATCTGCGTATCTGCCGAAGAGCTAAAGCCTATCGCTAAACTTCTTGCCGACAAGCTAAGAGCATCAGCCGACCTCTCTCTCCAGATAGAGATAGGCGAGGAGCCTTCGGGGAATGCTATTTACATCGGTGTCGATACGGCTCTTCCTCTTAAAGAAGAGGGTTATATGCTCCGATCCGATAAGCGTGGTGTCAGTATCATCGGCAAATCTGCCCATGGTGCTTTCTACGGTATGCAGACTTTGCTCCAGCTCCTTCCTGCCGAAGTGGAATCTTCGAATGAGGTACTGCTCCCCATGACGGTGCCCGGCGTCGAGATCAAGGACGAACCGGCATTCGGCTATCGTGGCTTTATGCTGGATGTATGCCGTCATTTCCTTTCGGTGGAGGACATCAAGAAGCATATCGACATCATGGCCATGTTCAAGATCAATCGTTTCCATTGGCACCTGACAGAGGATCAGGCATGGCGTATCGAAATCAAGAAATACCCACGACTGACCGAAGTGGGGTCTACAAGGACGGAAGGGGACGGTACGCAGTACTCCGGTTTCTACACGCAGGAGCAAGTACGGGATATTGTACAATACGCATCGGATCGTTTCATTACGGTGATTCCCGAGATCGAAATGCCCGGACATGCCATGGCTGCCCTCGCTGCTTATCCGCAGTTGGCTTGCTTCCCACGCGAATTCAAGCCACGGATTATCTGGGGAGTGGAGCAGGATGTTTATTGTGCCGGTAAGGACAGCGTCTTCCGTTTTATCTCTGATGTTATCGACGAGGTAGCACCCCTTTTCCCCGGCACATACTTCCATATCGGAGGGGACGAATGCCCTAAAGATCGATGGAAGGCTTGTTCGCTTTGTCAGAAGCGTATGCGTGACAATGGGTTGAAAGACGAACACGAGCTGCAGAGTTATTTCATCAAACAAGCTGAAAAGGTCTTACAAAAGCACGGCAAGAGACTGATCGGTTGGGATGAAATCCTCGAAGGCGGGCTTGCACCTTCTGCCACCGTTATGAGCTGGCGTGGAGAGGATGGTGGCATCGCAGCGGCTAATATGAATCACGATGTGATCATGACTCCGGGTAGCGGAGGTCTCTACTTGGATCATTATCAGGGAGATCCGACCGTCGAGCCTGTTGCCATCGGAGGTTATGCTCCATTGGAGCAAGTGTATGCTTACAATCCTTTGCCGAAAGAATTGCCGGCCGATAAGCATCGCTACGTGCTCGGAGCACAGGCCAATCTGTGGGCAGAATACCTCTATACTTCCGAACGATACGACTATCAGGCCTATCCAAGGCTACTGGCTGTGGCAGAGCTTACCTGGACACCGTTGGCCAAGAAAGATTTTGCCGATTTCTGTCGCCGTTTGGATAATGCCTGCGTTCGTCTGGACATGCATGGTATCAATTACCACATTCCGCTGCCCGAACAACCGGGTGGCTCTTCCGACTTTATAGCCTTTACGGACAAGGCTAAGCTGACCTTCACGACATCGCGTCCGATGAAAATGGTCTATACGCTGGACGAAACCGAACCGACCCTCACATCGACTCCTTACACGGTCCCTCTTGAATTTGCACAAACGGGCCTTCTGAAGATTCGTACCGTCACGGCCGGTGGGAAGATGAGTCCCGTACGCCGCATTCGTGTGGAGAAACAACCCTTCAATATGTCAATGGAAGTACCGGCACCGAAACCCGGACTGACCATTCGTACGGCTTACGGTGACTTATATGATGTGCCTGATCTGCAGCAGGTAGCCTCATGGGAAGTAGGGACCGTTAGCTCTTTGGAGGAAATCATGCACGGGAAAGAGAAGATAACTTCTCCTGAAGTACTGGAGCGCAGAGTTGTAGAGGCTACCGGTTATGTGCTTATTCCGGAGGATGGGGTATATGAGTTCTCTACGGAAAACAACGAGTTTTGGATTGATAATGTGAAGCTGATCGACAATGTGGGCGAAGTAAAGAAATTCTCCCGTCGCAATAGCAGTCGTGCCCTTCAGAAAGGCTACCATCCGATCAAGACGATATGGGTCGGAGCCATACAAGGTGGCTGGCCTACTTATTGGAACTACAGCAGGGTAATGATACGGCTCAAGGGAGAAGAAAAGTTCAAGCCGATCTCGTCCGATATGCTCTTTCAA","5.60","-14.67","87656","MKRLTFGACICCLLSLMACSQKAKQVQIPEYDKGINIIPLPMQLTESDDSFEVDDKTTICVSAEELKPIAKLLADKLRASADLSLQIEIGEEPSGNAIYIGVDTALPLKEEGYMLRSDKRGVSIIGKSAHGAFYGMQTLLQLLPAEVESSNEVLLPMTVPGVEIKDEPAFGYRGFMLDVCRHFLSVEDIKKHIDIMAMFKINRFHWHLTEDQAWRIEIKKYPRLTEVGSTRTEGDGTQYSGFYTQEQVRDIVQYASDRFITVIPEIEMPGHAMAALAAYPQLACFPREFKPRIIWGVEQDVYCAGKDSVFRFISDVIDEVAPLFPGTYFHIGGDECPKDRWKACSLCQKRMRDNGLKDEHELQSYFIKQAEKVLQKHGKRLIGWDEILEGGLAPSATVMSWRGEDGGIAAANMNHDVIMTPGSGGLYLDHYQGDPTVEPVAIGGYAPLEQVYAYNPLPKELPADKHRYVLGAQANLWAEYLYTSERYDYQAYPRLLAVAELTWTPLAKKDFADFCRRLDNACVRLDMHGINYHIPLPEQPGGSSDFIAFTDKAKLTFTTSRPMKMVYTLDETEPTLTSTPYTVPLEFAQTGLLKIRTVTAGGKMSPVRRIRVEKQPFNMSMEVPAPKPGLTIRTAYGDLYDVPDLQQVASWEVGTVSSLEEIMHGKEKITSPEVLERRVVEATGYVLIPEDGVYEFSTENNEFWIDNVKLIDNVGEVKKFSRRNSSRALQKGYHPIKTIWVGAIQGGWPTYWNYSRVMIRLKGEEKFKPISSDMLFQ","51170 53536","TIGR ID: PG0043","beta-N-acetylglucosaminidase","Cytoplasm, Outer membrane, Periplasm, Extracellular","PG0036 is equivalent to the previously reported sp|P49008|HEXA_PORGI in GenBANK, a beta-N-acetylhexosaminidase.Numerous significant hits in gapped BLAST to beta-N-acetylglucosaminidase protein; e.g. residues 37-531 are 39% similar to (AF072374) beta-N-acetylglucosaminidase of Pseudoalteromonas, residues 36-540 are 41% similar to (AL138851) putative sugar hydrolase of Streptomyces coelicolor, residues 27-499 are 35% similar to (U41417) beta-N-acetylhexosaminidase of Vibrio furnissii].This sequence is similar to BT1051.","
InterPro
IPR001540
Family
Glycoside hydrolase, family 20
PR00738\"[122-142]T\"[164-181]T\"[193-214]T\"[254-271]T\"[302-320]T\"[324-337]T\"[469-485]T\"[487-504]TGLHYDRLASE20
PF00728\"[170-506]TGlyco_hydro_20
InterPro
IPR011658
Domain
PA14
PF07691\"[626-766]TPA14
InterPro
IPR013145
Domain
PA14-related
SM00758\"[626-765]TPA14
InterPro
IPR013781
Domain
Glycoside hydrolase, catalytic core
G3DSA:3.20.20.80\"[168-534]TGlyco_hydro_cat
noIPR
unintegrated
unintegrated
G3DSA:3.30.379.10\"[33-166]TG3DSA:3.30.379.10
PTHR22600\"[112-724]TPTHR22600
PS51257\"[1-19]TPROKAR_LIPOPROTEIN
SSF51445\"[170-520]TSSF51445
SSF55545\"[24-169]TSSF55545
SSF56988\"[683-737]TSSF56988


","No hit to the COGs database.","***** PR00738 (Glycosyl hydrolase family 20 signature) with a combined E-value of 4.4e-81. PR00738A 122-142 PR00738B 164-181 PR00738C 193-214 PR00738D 254-271 PR00738E 302-320 PR00738F 324-337 PR00738G 469-485 PR00738H 487-504","Residues 1-135 are identical to a (BETA-HEXOSAMINIDASE PRECURSOR EC 3.2.1.52) protein domain (PD138810) which is seen in HEXA_PORGI.Residues 307-503 are 27% similar to a (HYDROLASE GLYCOSIDASE CHITOBIASE) protein domain (PD018185) which is seen in HEX_VIBVU.Residues 532-777 are 99% similar to a (BETA-HEXOSAMINIDASE PRECURSOR EC 3.2.1.52) protein domain (PD138814) which is seen in HEXA_PORGI.","","Tue Jun 12 15:56:41 MDT 2001","","Tue Jun 12 15:56:46 MDT 2001","Tue Jun 12 15:56:46 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Tue Jun 12 15:56:46 MDT 2001","Tue Jun 12 15:56:46 MDT 2001","","","Mon Apr 10 15:48:54 MDT 2000","Thu Dec 4 10:30:54 2003","Mon Apr 23 17:21:11 2001","Thu Dec 4 10:30:54 2003","Thu Dec 4 10:30:54 2003","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Mon Apr 10 12:38:08 MDT 2000","Mon Apr 23 17:21:11 2001","-47% similar to PDB:1HP4 CRYSTAL STRUCTURE OF STREPTOMYCES PLICATUS BETA-N-ACETYLHEXOSAMINIDASE (E_value = 7.3E_64);-47% similar to PDB:1HP5 STREPTOMYCES PLICATUS BETA-N-ACETYLHEXOSAMINIDASE COMPLEXED WITH INTERMEDIATE ANALOUGE NAG-THIAZOLINE (E_value = 7.3E_64);-47% similar to PDB:1JAK Streptomyces plicatus beta-N-acetylhexosaminidase in Complex with (2R,3R,4S,5R)-2-acetamido-3,4-dihydroxy-5-hydroxymethyl-piperidinium chloride (IFG) (E_value = 7.3E_64);-47% similar to PDB:1M01 Wildtype Streptomyces plicatus beta-hexosaminidase in complex with product (GlcNAc) (E_value = 7.3E_64);-47% similar to PDB:1M04 Mutant Streptomyces plicatus beta-hexosaminidase (D313N) in complex with product (GlcNAc) (E_value = 2.8E_63);","","","Residues 170 to 507 (E-value = 7.5e-63) place PG0036 in the Glyco_hydro_20 family which is described as Glycosyl hydrolase family 20, catalytic domain (PF00728)","Mon Apr 23 17:21:11 2001","34539917","","","","","","1","","20","PG0043" "PG0037","53945","54199","255","ATGGTGCGAGAATCTTTTCGTTCTCAGGCGAGATTTTTTCAACTCCCGAACCAAAATAAAAATTTTCTCAGACCACGTTTTTCAGAACTGAAATACACCGGATTTTTCAGTACACGTCAATCATTCGGAAGCGAAAAAGGCAGTCTGAATGAAAGAATGCGCCAGATTGTCAGTTCCGGACCCTGTGGCATCGGATTTGTCGTTCCTTTCGACGGAATAGAAACAAACAAAACATTAACAGATAATAATACACTA","10.90","4.94","9743","MVRESFRSQARFFQLPNQNKNFLRPRFSELKYTGFFSTRQSFGSEKGSLNERMRQIVSSGPCGIGFVVPFDGIETNKTLTDNNTL","53945 54199 [Shorter 49 136 97]","TIGR ID: PG0044","hypothetical protein","Periplasm, Cytoplasm","No significant hits in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Jan 2 14:37:26 MST 2001","Mon Apr 17 10:15:07 MDT 2000","Tue Dec 19 17:04:23 MST 2000","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1-55 are 54% similar to residues 1-58 of PG0086.1.","Thu Feb 8 10:25:44 MST 2001","","-65% similar to PDB:2AI4 Hypothetical protein SO1698 from Shewanella oneidensis. (E_value = );","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","20","PG0044" "PG0038","54199","56250","2052","ATGAGTAAGAAAGGAACAATCGGGGTAACGAGCGACAATATATTCCCCGTCATCAAAAAATTCCTGTACAGCGACCATGAGATATTCCTGCGTGAGATCGTCTCCAATGCCGTGGATGCTACGCAGAAGCTGAAAACGCTTACATCCGTCGGCGAATTCAAAGGCGAGACGGGTGACCTCCGCGTAACGGTCAGCGTGGATGAAGTGGCACGCACGATCACGGTCAGCGACCGCGGCGTAGGGATGACCGAAGAGGAGGTGGAGAAGTACATCAATCAGATTGCTTTCTCCAGTGCGGAAGAGTTTCTTGAAAAGTACAAAGACGACAAGGCCGCCATTATCGGCCACTTCGGACTCGGATTTTACTCGGCTTTCATGGTGTCCGAGCGAGTGGACGTGATCACGCGCTCTTTCCGAGAAGATGCTACGGCGGTGAAATGGAGCTGCGACGGATCGCCCGAATACACGCTCGAACCTGCGGACAAGGCTGACCGTGGCACCGACATCGTGATGCACATCGATGAGGAGAATAGCGAGTTCCTCAAAAAAGAAAAGATAGAGGGGCTCCTCGGCAAATACTGTAAGTTCCTTACCGTGCCGATCATTTTCGGCAAGAAGCAGGAATGGAAAGACGGCAAGATGCAAGATACGGACGAGGACAATCAGATCAACGACACACATCCTGCCTGGACCAAAAAGCCTGCCGACCTCAAGGACGAAGACTATAAGGAATTTTACCGTTCGCTCTATCCCATGTCCGAAGAGCCTCTCTTCTGGATCCACCTCAATGTGGACTATCCGTTCAATCTGACAGGTATCCTCTATTTCCCGAAGATCAAAAACAACTTGGATCTGCAGCGCAACAAGATTCAGCTCTACTGCAATCAGGTTTACGTCACCGATGAAGTACAGGGTATCGTGCCGGACTTCCTCACCCTCCTGCACGGGGTCATCGATTCGCCGGATATTCCCCTCAACGTATCGCGCTCCTATCTGCAGAGCGATGCCAATGTGAAGAAGATCTCGTCTCATATCACCAAGAAGGTGGCAGACCGTCTGGAAGAAATTTTCAAAAACGACCGCCCCACATTCGAGGAGAAATGGGATAGTCTGAAGCTCTTCGTCGAATACGGTATGCTGACGGATGAGAAGTTCTATGAGCGTGCAGCCAAATTCTTCCTTTTCACCGATATGGACGGACACAAGTACACGTTCGACGAATACCGAACGCTCGTCGAAGGTGTACAGACGGATAAGGACGGACAGGTAGTGTATCTCTATGCTACGGACAAGCATGGACAGTACAGCCACGTGAAACGTGCATCCGACAAAGGCTACAGCGTGATGCTGTTGGATGGTCAGTTGGATCCGCATATCGTGAGCCTGCTGGAGCAAAAGTTGGAGAAGACACACTTTGTCCGTGTCGATAGCGATACGATCAACAATCTGATCCGCAAGGAGGAAAGAGCCGAAGTGAAACTGTCCGATACGGAGCGCGCCACTCTCGTGAAGCTGTTCGAAGCACGCCTGCCACGGGACGAGAAGAAGCACTTCAATGTAGCTTTCGAATCGCTCGGAGCCGAAGGTGAAGCCATCCTTATCACACAAGCCGAATTCATGCGCCGTATGCGCGATATGGCACAGCTGCAGCCGGGAATGAGCTTCTACGGCGAACTCCCCGATTCGTACAATCTGGTACTTAATACCGATCATCCGCTCATCGACAGGGTACTCTCCGGTGAGAAAGAATCGGTAGAGCCTTCGCTCACAGAGCTTAGAGCGAAAATCGCCGAGCTGAAAGCGGAAGAGGCCAAGCTGCTCGATGAGGAAAAAGGGAAGAAACCGGAGGAAATCCCTGTTGCCACGAAGGAAGCCAAGGAGAACAACGCCGTCGAACAGGCCAAAACCGAAGGCAGTATCAACGATCAACTGACCAAATATGCTCAGGACAACGAGCTGATAGGTCAGCTCATCGACTTGGCTCTGCTCGGAAGCGGATTGCTGACGGGAGAGGCTTTGGCCGAATTCATTCGTCGCAGCCAGCGTCTTCTC","4.90","-28.65","78212","MSKKGTIGVTSDNIFPVIKKFLYSDHEIFLREIVSNAVDATQKLKTLTSVGEFKGETGDLRVTVSVDEVARTITVSDRGVGMTEEEVEKYINQIAFSSAEEFLEKYKDDKAAIIGHFGLGFYSAFMVSERVDVITRSFREDATAVKWSCDGSPEYTLEPADKADRGTDIVMHIDEENSEFLKKEKIEGLLGKYCKFLTVPIIFGKKQEWKDGKMQDTDEDNQINDTHPAWTKKPADLKDEDYKEFYRSLYPMSEEPLFWIHLNVDYPFNLTGILYFPKIKNNLDLQRNKIQLYCNQVYVTDEVQGIVPDFLTLLHGVIDSPDIPLNVSRSYLQSDANVKKISSHITKKVADRLEEIFKNDRPTFEEKWDSLKLFVEYGMLTDEKFYERAAKFFLFTDMDGHKYTFDEYRTLVEGVQTDKDGQVVYLYATDKHGQYSHVKRASDKGYSVMLLDGQLDPHIVSLLEQKLEKTHFVRVDSDTINNLIRKEERAEVKLSDTERATLVKLFEARLPRDEKKHFNVAFESLGAEGEAILITQAEFMRRMRDMAQLQPGMSFYGELPDSYNLVLNTDHPLIDRVLSGEKESVEPSLTELRAKIAELKAEEAKLLDEEKGKKPEEIPVATKEAKENNAVEQAKTEGSINDQLTKYAQDNELIGQLIDLALLGSGLLTGEALAEFIRRSQRLL","54199 56250 [Shadowed by 49]","Lopatin et al. (2000) report that the P.g. Hsp90 cross-reacts with human Hsp90. A 68 kDa polypeptide is located in cytosolic fractions.TIGR ID: PG0045","heat shock protein, HSP90 family","Cytoplasm","Numerous significant hits in gapped BLAST to heat shock proteins; e.g. residues 3-579 are 36% similar to the heat shock protein of Synechocystis sp (D90917); residues 22-584 are 31% similar to the heat shock protein HtpG of Escherichia coli (U82664); residues 22-465 are 33% similar to the high temperature protein G of Actinobacillus actinomycetemcomitans (U26968).This sequence is similar to BT0897.","
InterPro
IPR001404
Family
Heat shock protein Hsp90
PR00775\"[24-46]T\"[72-89]T\"[90-107]T\"[114-136]T\"[165-182]T\"[183-201]THEATSHOCK90
PTHR11528\"[4-652]THsp90
PF00183\"[179-642]THSP90
PS00298\"[23-32]NHSP90
InterPro
IPR003594
Domain
ATP-binding region, ATPase-like
G3DSA:3.30.565.10\"[2-219]TATP_bd_ATPase
PF02518\"[25-176]THATPase_c
SM00387\"[25-177]THATPase_c
SSF55874\"[1-209]TATP_bd_ATPase
noIPR
unintegrated
unintegrated
PTHR11528:SF25\"[4-652]TPTHR11528:SF25
SSF54211\"[225-478]TSSF54211


","BeTs to 9 clades of COG0326COG name: Molecular chaperone, HSP90 familyFunctional Class: OThe phylogenetic pattern of COG0326 is ----Y--cebrhuj--ol--xNumber of proteins in this genome belonging to this COG is 1","***** IPB001404 (Heat shock hsp90 proteins family) with a combined E-value of 1.3e-74. IPB001404A 3-47 IPB001404B 64-108 IPB001404C 108-151 IPB001404D 164-197 IPB001404E 208-262 IPB001404F 285-316 IPB001404G 320-356 IPB001404I 436-478 IPB001404J 541-594","Residues 427-579 are 25% similar to a (HEAT SHOCK PROTEIN CHAPERONE ATP-BINDING HSP) protein domain (PD000904) which is seen in P74702_SYNY3.Residues 11-201 are 49% similar to a (HEAT SHOCK PROTEIN CHAPERONE) protein domain (PD000898) which is seen in P74702_SYNY3.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Thu Dec 4 09:50:06 2003","Tue Jan 2 14:40:43 MST 2001","Thu Dec 4 09:50:06 2003","Wed Dec 20 11:47:58 2000","Mon Apr 23 15:41:05 2001","Mon Apr 23 15:41:05 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Mon Apr 17 10:26:52 MDT 2000","Mon Apr 23 15:41:05 2001","-49% similar to PDB:2IOP Crystal Structure of Full-length HtpG, the Escherichia coli Hsp90, Bound to ADP (E_value = 9.4E_68);-49% similar to PDB:2IOQ Crystal Structure of full-length HTPG, the Escherichia coli HSP90 (E_value = 9.4E_68);-51% similar to PDB:1Y4S Conformation rearrangement of heat shock protein 90 upon ADP binding (E_value = 8.0E_67);-51% similar to PDB:1Y4U Conformation rearrangement of heat shock protein 90 upon ADP binding (E_value = 8.0E_67);-47% similar to PDB:2CG9 CRYSTAL STRUCTURE OF AN HSP90-SBA1 CLOSED CHAPERONE COMPLEX (E_value = 3.2E_47);","","","Residues 25 to 176 (E-value = 7.6e-13) place PG0038 in the HATPase_c family which is described as Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (PF02518)Residues 179 to 642 (E-value = 1e-08) place PG0038 in the HSP90 family which is described as Hsp90 protein (PF00183)","Thu Dec 4 09:50:06 2003","34539918","","Lopatin DE, Combs A, Sweier DG, Fenno JC, Dhamija S.Characterization of heat-inducible expression and cloning of HtpG (Hsp90 homologue) of Porphyromonas gingivalis. Infect Immun. 2000 Apr;68(4):1980-7.PMID: 10722592Lopatin DE, Jaramillo E, Edwards CA, Van Poperin N, Combs A, Shelburne CE.Cellular localization of a Hsp90 homologue in Porphyromonas gingivalis.FEMS Microbiol Lett. 1999 Dec 1;181(1):9-16.PMID: 10564783","","Thu Dec 4 09:50:06 2003","","1","","20","PG0045" "PG0040","57290","56439","852","ATGAAAGCAGTTTTGATTCGCAGCCTCAGTGGTCTGGTCTATATGGCCCTGATCATCCTTCCCGTCGTACTAAGGGAACCGGCTTTGTTCTTAGCGGTTTTTGCCGTTTTCATCGTGTTGGGACTGCGGGAATTCGCCTCGCTGGTCAATCTGAATCGCACACGTCCCCTTCGGGCATTCATGGACGGACTTTTCGGTGCCTTCCTCTTTGCGGCCATCTTCCTATACGGCAGTGACCGAATGGATGTCACGATATTTATCCCGTATATCTTCTATGTCCTCTACACTATGGTGCGCAGTCTATATTCGGATCGCCATAAGGCCGGATCGGACAATAGCCGCACTTTCATGGGGCATCTGTATATAGCGGCAACGCTTGGTTTGGGTAGTCTTCTGCTCGTGCCCGAAAGTATCGGCAGGGAGTTGGCAGTAGGAGAAGTGGCAGACTTCACGCCTCACTACTTCCTCTTCGTTTTTGTGCTGATATGGCTGAATGATACAGGAGCTTTTATTGCAGGTTCCCTCTTTGGCAAGCATACACTCTTCAAGGTCATATCACCCAAGAAAACATGGGAGGGCTTTATCGGAGGGCTGCTGTTCACTGTGGCAGGTGCATTGCTGGCAGGCCACTATTCCGGTTCGGCCAAGCATCCGATGGAGCTGGTCTTCTTTGCTCTACTGGTAACGGCCATGGCCACTTGGGGCGATCTGTATGAGTCCAATCTCAAACGCAATGCAGGAGTGAAGGATTCCGGCCATATCATTCCCGGACATGGAGGTATACTGGACCGGCTGGACAGTGCTCTCTTCGTATTCCCGGCCGTCTATCTTTTCATTCTGATCTTCGGATTG","9.90","4.92","31292","MKAVLIRSLSGLVYMALIILPVVLREPALFLAVFAVFIVLGLREFASLVNLNRTRPLRAFMDGLFGAFLFAAIFLYGSDRMDVTIFIPYIFYVLYTMVRSLYSDRHKAGSDNSRTFMGHLYIAATLGLGSLLLVPESIGRELAVGEVADFTPHYFLFVFVLIWLNDTGAFIAGSLFGKHTLFKVISPKKTWEGFIGGLLFTVAGALLAGHYSGSAKHPMELVFFALLVTAMATWGDLYESNLKRNAGVKDSGHIIPGHGGILDRLDSALFVFPAVYLFILIFGL","57290 56439","TIGR ID: PG0046","phosphatidate cytidylytransferase (CDP diglyceride synthetase) (CDP-diglyceride pyrophosphorylase) (CDP-diacylglycerol synthase) (CDS) CTP:phosphatidate cytidylyltransferase) (CDP-DAG synthase) (CDP-DG synthetase)","Inner membrane, Cytoplasm","Numerous significant hits in gapped BLAST to phosphatidate cytidylyltransferase protein; e.g. residues 154-282 are 44% similar to (U70214) phosphatidate cytidylyltransferase of Escherichia coli, residues 7-280 are 29% similar to (U32773) CDP-diglyceride synthetase (cdsA) of Haemophilus influenzae Rd, residues 154-282 are 43% similar to (Z99112) phosphatidate cytidylyltransferase (CDP-diglyceride synthase) of Bacillus subtilis.","
InterPro
IPR000374
Family
Phosphatidate cytidylyltransferase
PF01148\"[5-282]TCTP_transf_1
PS01315\"[240-266]TCDS
noIPR
unintegrated
unintegrated
PD002096\"[224-261]TPD002096
PTHR13773\"[155-208]TPTHR13773


","BeTs to 16 clades of COG0575COG name: CDP-diglyceride synthetaseFunctional Class: IThe phylogenetic pattern of COG0575 is amtkyqvcEbrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB000374 (Phosphatidate cytidylyltransferase) with a combined E-value of 2e-37. IPB000374A 151-192 IPB000374B 229-272","Residues 154-281 are 43% similar to a (PHOSPHATIDATE CYTIDYLYLTRANSFERASE SYNTHASE) protein domain (PD002096) which is seen in CDSA_ECOLI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Mar 9 15:45:49 MST 2001","Mon Apr 17 10:42:06 MDT 2000","Tue Jan 2 16:20:35 MST 2001","Fri Mar 9 15:45:49 MST 2001","Fri Mar 9 15:45:49 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Mon Apr 17 10:42:06 MDT 2000","Fri Mar 9 15:45:49 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 5 to 282 (E-value = 4.1e-57) place PG0040 in the CTP_transf_1 family which is described as Cytidylyltransferase family (PF01148)","Fri Mar 9 15:45:49 MST 2001","34539919","","","","","","1","","20","PG0046" "PG0041","59340","57322","2019","ATGGCGAACAATGGGAATAACAAGAAACCCGGAAAACCGATGCGTTTCAACCCGATATGGCTCTATGCCCCTGTATTTCTGATATTGGCCACCCTCTTCTTTGTCGATCGGGATATTACATCCCAGAAAGAACTCAGCTGGAATGAGTTTCAGAATATCGCCAAAAAGCAAGCCTTTACGGACATCGTAGTCAATCGGAAAGAGAACACTCTCAAGGCGAGGGTCGATCCGGCCAAGGTCGATTCGGTATTCAAGAAAGGCGACATCCCGTCCTTTCAGGACAGAGGAAATATCTCAGACTACTATATCAACACGCAAATTCCGTCGGTAGACAAATTCTCCGACTTCTACGACCAAAACCAAATTACGGCTAAGGTGAAGTATGAAGACAGCAAGTTCAGCTTCACCTCTATCCTCATTACATGGGGCCCACTCATCCTTTTGCTCGTTTTCTGGTTTTGGATGATGCGCCGAATGAGCGGCGGTGGAGGAGGAAGTGGCGGTGGAGGCGGCGTCTTCAACGTAGGCAAATCCAAAGCCAAGCTCTATGACAAGACCAATATCCACGTTACATTCAGCGATGTAGCAGGTCTGCATGAAGCCAAGCAGGAAGTGGAAGAGATCGTTCACTTCCTCAAGAATCCATCCAAATACACCGAACTGGGAGGAAAGATCCCTAAAGGAGCTTTGCTCGTAGGACCTCCGGGAACGGGTAAGACTCTTCTGGCCAAGGCAGTAGCCGGAGAGGCGCACGTTCCTTTCTTCTCTTTGTCCGGTTCGGACTTCGTAGAGATGTTTGTCGGCGTAGGAGCCTCTCGTGTTCGCGACCTTTTCAGACAAGCCAAGGAAAAAGCCCCGTGTATCATCTTCATCGACGAGATCGACGCCGTAGGGCGTGCTCGCGGCAAGGGCAACAACTTCTCCGGCAATGATGAGCGTGAGAATACACTCAACCAGTTGCTTACCGAAATGGATGGCTTCGGCTCCAATAGCGGTGTGATCATTCTGGCTGCTACCAACCGTGCCGATGTGCTGGATAGTGCCTTGCTGCGTGCCGGACGTTTCGACCGCCAGATCTATGTAGATCTTCCCGACCTGAATGACCGCAAAGAGATCTTCCTTGTACACCTTAAACCGTTGAAGACCGACAAAAGTGTAGATGTGGAATTCCTGTCGCGCCAAACACCCGGCTTCTCCGGAGCAGACATTGCCAACGTTTGCAACGAAGCGGCGTTGATCGCCGCGCGAAGCAATAAAAACTTCGTAGACAAGGAAGACTTCATGAATGCCGTGGATCGGATCGTAGGCGGATTGGAGAAAAAGAACAAAATCACCACAGAGGAGGAGCGTCGCAGCATCGCCATCCACGAAGCCGGACACGCTACTATCAGTTGGATGCTACGCTATGCCAATCCTCTCGTCAAAGTCACTATCGTACCGCGAGGCAAGGCACTCGGTGCCGCCTGGTATCTGCCGGAAGAGCGTCAGATCACGACAACGGAGGCTCTGCAGGATCAGCTTTGCGCCCTTTTGGGTGGACGTGCCGCCGAAGATCTCTTCCTCGGACGTGTATCGACCGGTGCAGCCAATGACTTGGAGCGCGTTACGAAGTTGGCTTACGCCATGGTTACCTATTATGGCATGAGCGACAAGCTGCCCAACATCAACTACTACGAAATGCAAAACGACGGCTGGAATCTGACAAAGCCGTACAGTGATACTACCGCCGAGGTTATCGATGCCGAAGTAAACAGAATAATATCCGAACAATACGAGCGCGCCAAAAGCATTCTGCGCGAGCATGAAGCCGGGCACCACGAACTGGCAGATCTGTTGCTCAAGCGCGAAGTGATTCTGGCTGATGACGTAGAGCGTATATTCGGCAAACGCCCCTGGGCTTCGCGTACAGAAGAATTGCTTGGGCTGAATGCACCGGCTACCGCCACAGAAGAGACAACAGCGGATGCCGAAGCACCCATTCCCGTTGAGGGAGAAGAGAAGACGGAAGAACATCCCGAA","5.80","-8.41","74780","MANNGNNKKPGKPMRFNPIWLYAPVFLILATLFFVDRDITSQKELSWNEFQNIAKKQAFTDIVVNRKENTLKARVDPAKVDSVFKKGDIPSFQDRGNISDYYINTQIPSVDKFSDFYDQNQITAKVKYEDSKFSFTSILITWGPLILLLVFWFWMMRRMSGGGGGSGGGGGVFNVGKSKAKLYDKTNIHVTFSDVAGLHEAKQEVEEIVHFLKNPSKYTELGGKIPKGALLVGPPGTGKTLLAKAVAGEAHVPFFSLSGSDFVEMFVGVGASRVRDLFRQAKEKAPCIIFIDEIDAVGRARGKGNNFSGNDERENTLNQLLTEMDGFGSNSGVIILAATNRADVLDSALLRAGRFDRQIYVDLPDLNDRKEIFLVHLKPLKTDKSVDVEFLSRQTPGFSGADIANVCNEAALIAARSNKNFVDKEDFMNAVDRIVGGLEKKNKITTEEERRSIAIHEAGHATISWMLRYANPLVKVTIVPRGKALGAAWYLPEERQITTTEALQDQLCALLGGRAAEDLFLGRVSTGAANDLERVTKLAYAMVTYYGMSDKLPNINYYEMQNDGWNLTKPYSDTTAEVIDAEVNRIISEQYERAKSILREHEAGHHELADLLLKREVILADDVERIFGKRPWASRTEELLGLNAPATATEETTADAEAPIPVEGEEKTEEHPE","59340 57322","The FtsH homolog of B.subtilis apparently functions as an ATP-dependent zinc metalloprotease involved in the degradation of sigma-32. It is an integral membrane protein. FtsH is a member of the AAA family of ATPases and belongs to the M41 peptidase family (zinc metalloproteases). This sequence contains the MAxxxST motif associated with antigenic mimicry to a heart muscle-specific alpha myosin heavy chain sequence, and implicated in autoimmune myocarditis. See Bachmaier et al., Science, vol 283: Chlamydia Infections and Heart Disease Linked Through Antigenic Mimicry. NEW VALUE: The FtsH homolog of B.subtilis apparently functions as an ATP-dependent zinc metalloprotease involved in the degradation of sigma-32. It is an integral membrane protein. FtsH is a member of the AAA family of ATPases and belongs to the M41 peptidase family (zinc metalloproteases). TIGR ID: PG0047","ATPase/cell division protein/ATP-dependent zinc metallopeptidase","Cytoplasm, Inner membrane, Extracellular","In gapped BLAST there are many significant hits to a variety of proteins: a putative AAA-type ATPase from Arabidopsis thaliana (gi: 3461848), an ATPase family gene from Homo sapiens (gi: 5802970), a FtsH2 homolog from Cyanidioschyzon merolae (gi: 6539504), FtsH from Neisseria meningitidis (gi: 7226031), B. subtilis (gi: 585159), H. influenzae (gi: 2492507).This protein is similar to CT841, a predicted FtsH-related ATPase, and to BT4007.","
InterPro
IPR000642
Domain
Peptidase M41
PF01434\"[423-626]TPeptidase_M41
InterPro
IPR003593
Domain
AAA+ ATPase, core
SM00382\"[225-365]TAAA
InterPro
IPR003959
Domain
AAA ATPase, core
PF00004\"[228-416]TAAA
InterPro
IPR003960
Domain
AAA ATPase, subdomain
PS00674\"[333-351]TAAA
InterPro
IPR005936
Domain
Peptidase M41, FtsH
TIGR01241\"[134-628]TFtsH_fam
InterPro
IPR011546
Domain
Peptidase M41, FtsH extracellular
PF06480\"[43-202]TFtsH_ext
noIPR
unintegrated
unintegrated
G3DSA:1.10.8.60\"[364-432]TG3DSA:1.10.8.60
G3DSA:3.40.50.300\"[178-361]TG3DSA:3.40.50.300
PTHR23076\"[14-617]TPTHR23076
PTHR23076:SF11\"[14-617]TPTHR23076:SF11
SSF52540\"[172-562]TSSF52540


","BeTs to 13 clades of COG0465COG name: ATP-dependent Zn proteasesFunctional Class: OThe phylogenetic pattern of COG0465 is ----YqvCeBrHUJgpoLinxNumber of proteins in this genome belonging to this COG is 1","***** IPB001939 (AAA-protein (ATPases associated with various cellular activities)) with a combined E-value of 8.3e-77. IPB001939A 192-212 IPB001939B 226-247 IPB001939C 268-301 IPB001939D 319-365","Residues 227-374 are 31% similar to a (F54B3.3 PROTEIN) protein domain (PD094582) which is seen in Q20748_CAEEL.Residues 225-435 are 27% similar to a (CELL DIVISION PROTEIN, PUTATIVE) protein domain (PD185276) which is seen in O83350_TREPA.Residues 427-602 are 49% similar to a (PROTEIN CELL DIVISION ZINC METALLOPROTEASE HOMOLOG) protein domain (PD002293) which is seen in O81076_ARATH.Residues 297-346 are 66% similar to a (CELL DIVISION PROTEIN FTSH) protein domain (PD194210) which is seen in FTH2_HAEIN.Residues 306-372 are 49% similar to a (PROTEIN CELL DIVISION ATP-BINDING) protein domain (PD094491) which is seen in FTSH_CHLVU.Residues 172-408 are 64% similar to a (PROTEIN ATP-BINDING PROTEASE SUBUNIT REGULATORY HOMOLOG) protein domain (PD000092) which is seen in FTSH_HELFE.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Mon Jan 5 09:40:01 2004","Wed May 23 17:07:14 MDT 2001","Mon Jan 5 09:40:01 2004","Tue Jan 2 16:21:29 MST 2001","Wed Mar 28 15:14:55 MST 2001","Wed Mar 28 15:14:55 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 193-299 are 34% similar to PG0382, an ATP-dependent ClpX-related protease.","Wed Mar 28 15:14:55 MST 2001","Tue Jul 17 14:37:27 2007","-72% similar to PDB:2CE7 EDTA TREATED (E_value = 2.8E_125);-72% similar to PDB:2CEA WILDTYPE (E_value = 2.8E_125);-68% similar to PDB:2DHR Whole cytosolic region of ATP-dependent metalloprotease FtsH (G399L) (E_value = 8.0E_120);-79% similar to PDB:1LV7 Crystal Structure of the AAA domain of FtsH (E_value = 3.9E_90);-75% similar to PDB:1IY2 Crystal structure of the FtsH ATPase domain from Thermus thermophilus (E_value = 1.3E_82);","","","Residues 43 to 202 (E-value = 2.4e-32) place PG0041 in the FtsH_ext family which is described as FtsH Extracellular (PF06480)Residues 228 to 416 (E-value = 7e-94) place PG0041 in the AAA family which is described as ATPase family associated with various cellular activities (AAA) (PF00004)Residues 422 to 626 (E-value = 8e-95) place PG0041 in the Peptidase_M41 family which is described as Peptidase family M41 (PF01434)","Mon Jan 5 09:40:01 2004","34539920","","","Akiyama, Y., T. Yoshihisa, K. Ito 1995. FtsH, a membrane-bound ATPase, forms a complex in the cytoplasmic membrane of Escherichia coli. J.Biol.Chem. 270:23485-23490. PubMed: 7559511.Akiyama, Y., A. Kihara, H. Tokuda, K. Ito 1996. FtsH (HflB) is an ATP-dependent protease selectively acting on SecY and some other membrane proteins. J.Biol.Chem. 271:31196-31201. PubMed: 8940120.","","Tue Jul 17 14:37:27 2007","1","","20","PG0047" "PG0042","60647","59547","1101","ATGAGTTTGCAATGCGGTATCGTCGGCCTGCCCAATGTGGGGAAATCGACTCTTTTTAATTGTTTGTCCAATGCCAAGGCACAGTCTGCCAATTTCCCCTTCTGTACCATTGATCCGAACGTCGGTGTAATCACAGTGCCTGATGAGCGACTGAATATCCTGGCCGATCTGTGCAAACCCCAACGGCTGATCCCAACCACGGTAGAGATCGTAGATATTGCCGGTCTTGTCAAAGGCGCCAGCAAGGGCGAAGGGTTAGGGAATAAATTCCTGGCCAATATCCGTGAAACGGATGCGATACTCCACGTGCTCCGATGCTTCGATGATGACAATATCACACACGTGGACGGATCCGTAGATCCTGTACGCGACAAAGAAATCATCGACACCGAGCTACAACTGAAAGACCTTGAAACGATAGAGAGTCGCATACAGAAAGTCCAAAAGCAGGCACAAACAGGGGGCGACAAACAAGCCAAGCTGGCTTATCAAGTGCTCTCGAAATTCAAAGAAGCTCTTGACGAAGGCAGGAATGCTCGCAGCGTCAGTTTCGACACCAAAGACGAACAGCAAATAGCACGCGAACTCTTTCTCCTGACGGCCAAACCGGTCATGTACGTTTGCAATGTGGACGAAGCTTCTGCTCTTAGTGGCAACAAATATGTGGAAGCCGTTCGCGAAGCAGTCAAAAACGAAGATGCAGAAATCCTCGTCGTAGCAGCCAAGATAGAGAGCGAGATCGCCGAACTGGAGACATACGAAGAGCGGCAAATGTTCCTCGAAGAGATCGGTCTGAAAGAATCCGGCGTGAGCCGTCTGATCAAAGCCGCTTATCACTTGCTGAATCTTCAAACCTACTTTACGGCCGGGAGCGATGAGGTAAGGGCTTGGACATTCCTCCGCGGAAGCAAAGCACCTCAGTGTGCCGGTATCATCCACACCGATTTTGAAAAAGGGTTTATCCGTGCCGAGGTCATCAAGTACAATGACTTTGTCAGTCTTGGCAGCGAACAAGCCGTGAAAGAAGCCGGTAAGATGAGTGTTGAGGGAAAAGAATATGTTGTGCAGGATGGCGACATCATGCATTTCCGCTTCAATGTC","4.90","-13.09","40615","MSLQCGIVGLPNVGKSTLFNCLSNAKAQSANFPFCTIDPNVGVITVPDERLNILADLCKPQRLIPTTVEIVDIAGLVKGASKGEGLGNKFLANIRETDAILHVLRCFDDDNITHVDGSVDPVRDKEIIDTELQLKDLETIESRIQKVQKQAQTGGDKQAKLAYQVLSKFKEALDEGRNARSVSFDTKDEQQIARELFLLTAKPVMYVCNVDEASALSGNKYVEAVREAVKNEDAEILVVAAKIESEIAELETYEERQMFLEEIGLKESGVSRLIKAAYHLLNLQTYFTAGSDEVRAWTFLRGSKAPQCAGIIHTDFEKGFIRAEVIKYNDFVSLGSEQAVKEAGKMSVEGKEYVVQDGDIMHFRFNV","60647 59547","TIGR ID: PG0048","conserved GTP-binding protein","Cytoplasm","Numerous significant hits in gapped BLAST to conserved GTP-binding protein; e.g. residues 1-367 are 59% similar to (AE002533) GTP-binding protein, putative of Neisseria meningitidis, residues 1-367 are 57% similar to U32723) conserved hypothetical GTP-binding protein of Haemophilus influenzae Rd, residues 1-367 are 56% similar to (AE000219) putative GTP-binding protein of Escherichia coli.This sequence is similar to CT092 and BT3116.","
InterPro
IPR000583
Domain
Glutamine amidotransferase, class-II
PS00443\"[1-9]?GATASE_TYPE_II
InterPro
IPR002917
Domain
GTP-binding protein, HSR1-related
PF01926\"[3-138]TMMR_HSR1
InterPro
IPR004396
Family
Conserved hypothetical protein 92
TIGR00092\"[1-367]TCHP92
InterPro
IPR006073
Domain
GTP1/OBG
PR00326\"[5-25]T\"[26-44]T\"[70-85]T\"[87-105]TGTP1OBG
InterPro
IPR012675
Domain
Beta-grasp fold, ferredoxin-type
G3DSA:3.10.20.30\"[283-367]TFerredoxin_fold
InterPro
IPR012676
Domain
TGS-like
SSF81271\"[283-367]TTGS-like
InterPro
IPR013029
Domain
Protein of unknown function DUF933
PF06071\"[283-366]TDUF933
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[1-282]TG3DSA:3.40.50.300
PTHR23305\"[1-367]TPTHR23305
PTHR23305:SF4\"[1-367]TPTHR23305:SF4
SSF52540\"[1-282]TSSF52540


","BeTs to 17 clades of COG0012COG name: Predicted GTPaseFunctional Class: RThe phylogenetic pattern of COG0012 is amtkYqvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB000765 (GTP1/OBG family) with a combined E-value of 1.6e-15. IPB000765C 74-95","Residues 180-367 are 61% similar to a (PROTEIN GTP-BINDING PROBABLE INTERGENIC REGION PUTATIVE) protein domain (PD004355) which is seen in YYAF_BACSU.Residues 3-43 are 80% similar to a (PROTEIN GTP-BINDING INTERGENIC REGION HOMOLOG ERA IRON) protein domain (PD000414) which is seen in P73886_SYNY3.Residues 66-168 are 66% similar to a (PROTEIN GTP-BINDING INTERGENIC REGION) protein domain (PD001145) which is seen in YCHF_ECOLI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Mar 22 12:07:07 MST 2000","Fri Dec 19 10:54:21 2003","Wed Mar 28 15:18:04 MST 2001","Wed Mar 28 15:18:04 MST 2001","Wed Mar 28 15:18:04 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1-143 are 35% similar to PG0711, GTP-binding protein.","Wed Mar 28 15:18:04 MST 2001","Wed Mar 28 15:18:04 MST 2001","-74% similar to PDB:1JAL YCHF PROTEIN (HI0393) (E_value = 2.8E_118);-67% similar to PDB:2DBY Crystal structure of the GTP-binding protein YchF in complexed with GDP (E_value = 3.1E_93);-67% similar to PDB:2DWQ Thermus thermophilus YchF GTP-binding protein (E_value = 3.1E_93);-59% similar to PDB:1NI3 Structure of the Schizosaccharomyces pombe YchF GTPase (E_value = 2.7E_73);-56% similar to PDB:1WXQ Crystal Structure of GTP binding protein from Pyrococcus horikoshii OT3 (E_value = 1.1E_18);","","","Residues 124 to 367 (E-value = 5.6e-148) place PG0042 in the DUF933 family which is described as Protein of unknown function (DUF933) (PF06071)","Wed Mar 28 15:18:04 MST 2001","34539921","","","","","","1","","20","PG0048" "PG0043","61056","62210","1155","ATGAGTACAAATATAAGCCTATTCGCCCAAGTTATCCGCCTGTTGCCTCGTCCGTTGATTAAGAAGCTCTCTACAGAGTTTCAAGTAAACAAACATAGCAAACACTTCACAGGGTGGCAACACTTAGTGAGCATGATTTTCAGCCAATTCTCAAGCTGTATCTCCTTACGCGAGATTAGTAATGGCTTACGCTCAGCCACAGGTAACCTCAACCACTTAGGCATATGCACAGCACCCTCTAAGTCCAATTTATCTTATCAGAACGAGCACCGTACCTCAGACTTCTTTCGAGCGTGCTATTATGCCTTGCTAGATTATTTCGGACAGCAGGGTATGGGGCAAGGGCGTAAGTTTCGTTTTAAGCAACCCGTCAAGCTyCTAGACTCTACGACCATTACCCTTTGCCTTGCCCTATACGATTGGGCTAAATACACACATACGAAAGGAGCTGTTAAGCTTCATACACTCTTAGACTTCAAGACTCTATTGCCTGAATATGTGCATATTAGTGATGGTAAAGGACATGATGGCAAGATGGCCAATTCTATTCCTATCCCAGCAGGAAGTATCGTCGTGGCTGACCGTGGCTATGCTGATACCGCCTTGCTCAATAGTTGGGACAGCACCCAAGTGAGTTTTGTAGTACGCCACCCAAGGTCCTTAAAATATGAGGTTATTCAAGAGTTGGAACTCCCAGAACATGGGCATCAGCAAATACTCGTAGATCAGAGAGTACGGCTCACAGGCGTTCAGACGCAAGGCAAGTACACTAAGCCATTGAGGCATATTGCCCTCTACAACGAGCAACATGGCGATGTCGTTGAGTTATTGACCAACATAGACACCCTTGCAGCAAGTAGTATAGCCTTGCTGTATCGTTCAAGATGGCTTATCGAGATTTTCTTTCGGAATTTGAAGCAACGCCTCAGCATGAAGGCCTTTCTTGGAACAACGCGCAATGCCGTAGAGGTGCAAATATGGACCGCTCTTATTACAATGCTTTTGATGGTCTATCTCAAGAGTATCGCCAAATATCGGTGGTGCTTGTCTAATCTTGTCTCTTCGCTAAGAATCAACACATTTACCAAGATGGATCTGATGCAATGGCTTAATGAGCCGTTTACGCCTCCGCCAGAGCCCGAAAATCAGCTCTTT","10.30","17.13","96974","MSTNISLFAQVIRLLPRPLIKKLSTEFQVNKHSKHFTGWQHLVSMIFSQFSSCISLREISNGLRSATGNLNHLGICTAPSKSNLSYQNEHRTSDFFRACYYALLDYFGQQGMGQGRKFRFKQPVKLLDSTTITLCLALYDWAKYTHTKGAVKLHTLLDFKTLLPEYVHISDGKGHDGKMANSIPIPAGSIVVADRGYADTALLNSWDSTQVSFVVRHPRSLKYEVIQELELPEHGHQQILVDQRVRLTGVQTQGKYTKPLRHIALYNEQHGDVVELLTNIDTLAASSIALLYRSRWLIEIFFRNLKQRLSMKAFLGTTRNAVEVQIWTALITMLLMVYLKSIAKYRWCLSNLVSSLRINTFTKMDLMQWLNEPFTPPPEPENQLF","61056 62210","Member of the IS5 family of IS elements.TIGR ID: PG0050. Reported by Chen et al., 2004, to be highly divergent in ATCC 33277.","ISPg4 transposase","Inner membrane, Cytoplasm","PG0043 is essentially identical to a previously sequenced P.gingivalis protein in GenBank, AAD38020.Several significant hits to transposase proteins in gapped BLAST; e.g. residues 20-337 are 27% similar to dbjBAA92234.1 transposase of Bacillus subtilis, residues 78-336 are 28% similar to spP55729Y4ZB_RHISN putative transposase Y4ZB of Rhizobium sp. NGR234, residues 116-339 are 29% similar to gbAAD45719.1AF160811_8 transposase of Bacillus stearothermophilus.","
InterPro
IPR002559
Domain
Transposase, IS4-like
PF01609\"[124-335]TTransposase_11
InterPro
IPR012337
Domain
Polynucleotidyl transferase, Ribonuclease H fold
SSF53098\"[185-350]TRNaseH_fold


","No hit to the COGs database.","***** PF01609 (Transposase (IS4 family)) with a combined E-value of 1.4e-08. PF01609B 288-309","Residues 271-336 are 45% similar to a (TRANSPOSASE PUTATIVE PLASMID ELEMENT) protein domain (PD003301) which is seen in Y4ZB_RHISN.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","Fri Feb 2 10:12:44 MST 2001","Fri Feb 2 10:12:44 MST 2001","","Tue Feb 22 13:39:46 2005","Mon Feb 12 16:59:37 MST 2001","Tue Feb 22 13:39:46 2005","Mon Dec 4 11:48:48 MST 2000","Fri Feb 9 16:02:35 MST 2001","Fri Feb 9 16:02:35 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG0043 is paralogously related to PG0016, PG0162, PG0205, PG0445, PG0868, PG1114, PG1461, PG1447 and PG1920, all predicted ISPg4-related transposases.","Mon Feb 12 16:59:37 MST 2001","Fri Feb 9 16:02:35 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 124 to 335 (E-value = 6.9e-43) place PG0043 in the Transposase_11 family which is described as Transposase DDE domain (PF01609)","Tue Mar 27 09:31:11 MST 2001","34539923","","Chen T, Hosogi Y, Nishikawa K, Abbey K, Fleischmann RD, Walling J, Duncan MJ.Comparative whole-genome analysis of virulent and avirulent strains of Porphyromonas gingivalis.J Bacteriol. 2004 Aug;186(16):5473-9.PMID: 15292149","","Tue Feb 22 13:39:46 2005","","1","","20","PG0050" "PG0044","62502","63278","777","ATGGAAGAGGTATCTCCCGACCACAGCACCATCAGTCGATTTCGTTCGGCACTGACAGAGTTGGGGCTCATGGACAAACTATTGGCGCAGTTTAACAAACAACTTTCCCGCCATCACATTTCGGTCAGGGAAGGGGTGCTTGTCGATGCAAGCCTTGTGGAGACGCCGCATAAACCCAACGGAAGCATTACGATTGAAGTCGCAGACGACAGAGAAGACAATCGGAGCGAGGCGGAAAAAGAGGCAGAGGAGGATTATCAAAAACAGGTTGTCCGTCAGCGTAAAGGGACGGATGAAGAAGCCCGTTGGGTTTACAAACAAAAGCGTTATCACTACGGATACAAAAAGCATTGTCTGACCAATGTTCAAGGCATTGTTCAAAAGGTGATAACGACTGCAGCGAACCGCAGTGACACGAAGGAGTTTATTGCGCTATTGCAGGGTGCAAACATACCTCAAGGCACAGCCGTCTTCGCGGACAAAGGATATGCTTGCGGGGAAAATCGTTCCTACCTGCAAACCCATCACCTTCAAGACGGCATCATGCACAAGGCACAACGCAACAGGGCATTGACCGAGGAAGAGAAGCAACGAAACAAAGCAATCAGTCGGATACGGAGCACCATCGAACGCACCTTTGGCAGTATTCGCCGGTGGTTTCATGGCGGACGATGTCGATACCGGGGACTTGCCAAGACCCATACTCAAAACATTCTTGAAAGCATCGCCTTTAATTTATACAGGACCCCGGGGATAATTATGTCCTCATCTCTAGGA","10.20","11.52","29641","MEEVSPDHSTISRFRSALTELGLMDKLLAQFNKQLSRHHISVREGVLVDASLVETPHKPNGSITIEVADDREDNRSEAEKEAEEDYQKQVVRQRKGTDEEARWVYKQKRYHYGYKKHCLTNVQGIVQKVITTAANRSDTKEFIALLQGANIPQGTAVFADKGYACGENRSYLQTHHLQDGIMHKAQRNRALTEEEKQRNKAISRIRSTIERTFGSIRRWFHGGRCRYRGLAKTHTQNILESIAFNLYRTPGIIMSSSLG","62502 63278","Member of the IS5 family of elements. Reproduces the middle and C-terminal domains of full-length ISPg1 elements (e.g. PG1662).TIGR ID: PG0051. Reported by Chen et al., 2004, to be highly divergent in ATCC 33277.","ISPg1 transposase fragment (IS1106-related transposase)","Cytoplasm","PG0044 is equivalent to the previously sequenced AJ130872 and AB015879 in GenBANK. Residues 6-248 are 34% similar to the IS1106 sequence of N.meningitidis (AE002488).","
InterPro
IPR002559
Domain
Transposase, IS4-like
PF01609\"[45-246]TTransposase_11


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 201-259 are 96% similar to a (TRANSPOSASE ORF7 INSERTION SEQUENCE IS1126-LIKE GENE) protein domain (PD187845) which is seen in Q9ZA61_PORGI.Residues 55-200 are 97% similar to a (TRANSPOSASE PLASMID PROTEIN ELEMENT) protein domain (PD004652) which is seen in Q9ZAD0_PORGI.Residues 8-54 are identical to a (TRANSPOSASE ORF7 INSERTION SEQUENCE) protein domain (PD187846) which is seen in Q9ZA61_PORGI.","","","","","","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","","","","Tue Feb 22 13:40:41 2005","Fri Feb 16 12:04:19 MST 2001","Thu Dec 21 14:51:21 MST 2000","Thu Dec 21 14:21:33 MST 2000","","Tue Feb 22 13:40:41 2005","yes","Fri Feb 20 15:41:32 MST 1998","PG0044 is virtually identical to PG1087, PG0763, PG1755, PG0686, PG0756, PG1798, PG1230, PG1919, PG1184, PG0689, PG1215, PG1665, PG0839, PG1895, all ISPg1 fragments that reproduce the middle and C-terminal residues of PG1267, PG0169, PG1050, PG1062, PG0740, PG0918, PG1662, PG1422, PG0420, PG0499, PG1099.Also, partial similarities to PG0732, PG0842, PG0883, PG1231, PG0730, PG1159, PG1608. ","Fri Feb 16 12:04:19 MST 2001","Wed Feb 14 11:36:47 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 45 to 246 (E-value = 2e-40) place PG0044 in the Transposase_11 family which is described as Transposase DDE domain (PF01609)","Tue Jun 12 16:04:23 MDT 2001","","","Hanley,S.A., Aduse-Opoku,J. and Curtis,M.A.A 55-kilodalton immunodominant antigen of Porphyromonas gingivalisW50 has arisen via horizontal gene transferInfect. Immun. 67 (3), 1157-1171 (1999)Maley,J. and Roberts,I.S.Characterisation of IS1126 from Porphyromonas gingivalis W83: a new member of the IS4 family of insertion sequence elementsMicrobiol. Lett. 123 (1-2), 219-224 (1994)Shibata,Y., Hayakawa,M., Takiguchi,H., Shiroza,T. and Abiko,Y.Determination and characterization of the hemagglutinin-associatedshort motifs found in Porphyromonas gingivalis multiple geneproducts. J. Biol. Chem. 274 (8), 5012-5020 (1999)Chen T, Hosogi Y, Nishikawa K, Abbey K, Fleischmann RD, Walling J, Duncan MJ.Comparative whole-genome analysis of virulent and avirulent strains of Porphyromonas gingivalis.J Bacteriol. 2004 Aug;186(16):5473-9.PMID: 15292149","Knight,A.I., Ni,H., Cartwright,K.A. and McFadden,J.J.Identification and characterization of a novel insertion sequence, IS1106, downstream of the porA gene in B15 Neisseria meningitidis.Mol. Microbiol. 6 (11), 1565-1573 (1992)","Tue Feb 22 13:40:41 2005","Wed Feb 14 11:36:47 MST 2001","1","","20","PG0051" "PG0045","63559","64743","1185","ATGAGCTGGAGCGGTAATCAAACATTCTTCGAGCGAAGCCGCATCATGATGCGCGTTACCTTTATTTTCGCCGCCATGGTCATTGCTCTCCTTACGTTGTTTGCTTCGGACAGACTGATCGATAAGATGGCCGGCGAGGAAAGACAGAAAATCGAGCTATGGGCACAGGCTACCAAGATCGTGGCCTCCGACGATGAAGCCGTTCTGGCCAAAGACCTTGTTTTGCAGATTATCCAATCCAACAATAGCATCCCCGTCATCCTGTGCGATCCCAAAGACTCTATTATTTCGTACAACAACATCGACATTCCGGCCGGCAAACCTGCACTGCCCTACCTCCAAAAGAAGCTTCGTTATTTCAAGGAAGGGTATCCTCCTATCCGAATAGAAATAGAGGCCCGTCGGCCACAATTCCTCTATTATTCCGACAGCCAAACCCTACGGCGACTGTTGGTATTGCCTTATATAGCTCTGAGCGTGATATTTATCTTCCTCGGTATTTCCATCATGGCCTTGCTGGCTGAGCGCAGATCCGAACAGAATCGTGTATGGAACGGACTCTCCAAAGAGACTGCCCATCAGCTTGGCACGCCCATATCCAGCCTGATGGCATGGGTGGAACTCCTCAAGGCATCGGAAGAGGATCCATCTATCACCAATGAGATGGAAAAGGATATAGACCGACTGCGTATGATAGCCGAACGATTCCAAAAGGTAGGCTCGGAACCCAAGACGGAAGTGCAGGATGTCCGTCCGGCTTTGGGCAGCACAGCGGACTACATGCGCTACCGCGTATCGCGACAAGTGGACATAGAATTGAGGATGCCGAATGAGGTCATCGGCATAGCACTTTCGGCACCGCTGTTCAGTTGGGTGATCGAAAATATGATCAAAAATGCCGTCGATGCCATGAGCGGTAAAGGAAAGATCACGATCGAACTTAAGGAGAAAGGCTCGTATGCAGTAATAGATATTACCGACACGGGCAAAGGGATCCCCAAGGGGAAAATGCGCGATATATTCCGTCCGGGCTATTCCACGAAGACCAGAGGTTGGGGTTTGGGCTTGTCTCTGGCAAAGCGAATCATAGAGAAATATCACAAAGGGAAAATAAGCGTAAAGCAATCGGAGCCGGGTATTGGCACTACTTTCCGTATTCTGCTGCCGAAACAGACCGATCTGCCA","10.20","10.46","44692","MSWSGNQTFFERSRIMMRVTFIFAAMVIALLTLFASDRLIDKMAGEERQKIELWAQATKIVASDDEAVLAKDLVLQIIQSNNSIPVILCDPKDSIISYNNIDIPAGKPALPYLQKKLRYFKEGYPPIRIEIEARRPQFLYYSDSQTLRRLLVLPYIALSVIFIFLGISIMALLAERRSEQNRVWNGLSKETAHQLGTPISSLMAWVELLKASEEDPSITNEMEKDIDRLRMIAERFQKVGSEPKTEVQDVRPALGSTADYMRYRVSRQVDIELRMPNEVIGIALSAPLFSWVIENMIKNAVDAMSGKGKITIELKEKGSYAVIDITDTGKGIPKGKMRDIFRPGYSTKTRGWGLGLSLAKRIIEKYHKGKISVKQSEPGIGTTFRILLPKQTDLP","63559 64743","TIGR ID: PG0052","histidine kinase sensor protein","Inner membrane, Cytoplasm","Numerous significant hits in gapped BLAST to sensor proteins; e.g. residues 145-389 are 27% similar to the two-component sensor histidine kinase of Bacillus subtilis (Z99111); residues 192-389 are 30% similar to the sensor protein AtoS for response regulator AtoC of Escherichia coli (AE000311); residues 174-389 are 31% similar to the Salmonella typhimurium sensor protein of Salmonella typhimurium LT2 (AF170176).","
InterPro
IPR003594
Domain
ATP-binding region, ATPase-like
G3DSA:3.30.565.10\"[241-389]TATP_bd_ATPase
PF02518\"[284-391]THATPase_c
SM00387\"[284-392]THATPase_c
SSF55874\"[245-389]TATP_bd_ATPase
InterPro
IPR003661
Domain
Histidine kinase A, N-terminal
PF00512\"[183-242]THisKA
SM00388\"[183-242]THisKA
InterPro
IPR004358
Domain
Histidine kinase related protein, C-terminal
PR00344\"[321-335]T\"[339-349]T\"[350-368]T\"[376-389]TBCTRLSENSOR
InterPro
IPR005467
Domain
Histidine kinase
PS50109\"[190-392]THIS_KIN
InterPro
IPR009082
Domain
Histidine kinase, homodimeric
SSF47384\"[173-241]THis_kin_homodim
noIPR
unintegrated
unintegrated
PTHR23283\"[173-393]TPTHR23283
PTHR23283:SF24\"[173-393]TPTHR23283:SF24


","BeTs to 13 clades of COG0642COG name: Sensory transduction histidine kinasesFunctional Class: TThe phylogenetic pattern of COG0642 is AMT-YQVCEBRHUJ--O-inXNumber of proteins in this genome belonging to this COG is 6","No significant hit to the Blocks database.","Residues 292-389 are 42% similar to a (KINASE PROTEIN SENSORY TRANSDUCTION HISTIDINE SENSOR) protein domain (PD000064) which is seen in KINC_BACSU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Jan 2 14:45:27 MST 2001","Tue Jan 2 14:45:27 MST 2001","Tue Jan 2 14:45:27 MST 2001","","Mon May 21 16:36:36 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 155-391 are 26% similar to PG1571, residues 175-389 are 22% similar to PG0014 and residues 109-368 are 23% similar to PG1255.","Mon Apr 17 12:02:17 MDT 2000","Mon May 21 16:36:36 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 284 to 391 (E-value = 1.9e-24) place PG0045 in the HATPase_c family which is described as Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (PF02518)","Mon May 21 16:36:36 MDT 2001","34539924","","","","","","1","","","PG0052" "PG0046","65205","66956","1752","ATGAATTACAACTGGAATTTGGAGCCGTTTACCGCAGAGGAACGTTCCCTCGGGACAATATTCTGTCGGGAGCTAAGGCTCGCGCCCGTAGTGGGGTGCCTATTGGCACGCAGGGGAATAGCTTCCGTAGAGGAAGCTAAGCGTTTCTTTCGCCCAAGATTGGAGGATCTCCACGATCCTTTCCTGATGAAGGATATGGACAAGGCTGTAGCTCGCCTGAACAGGGCAGTAGGGCGAAAGGAAAAAATCATGATTTACGGTGACTATGATGTAGACGGTACCACGGCAGTGGCACTCGTCTATAAGTATTTGCGCGCCACGGGCTGCTCCGAAACCCAATTGGATTACTACATTCCGGATCGGTACGATGAGGGTTATGGTATCTCTTATCGAGGAATTGATTTGGCTCACTCTCTCGGAACGAAACTGATAATCGTACTCGACTGTGGTATCAAAGCCGTCGAAAAGGTGGCATACGCCAAGTCGCTTGACATTGATTTTATTATCTGCGACCATCACAATCCGGATGAAACGCTACCTGATGCCGTTGCGGTGCTGGATGCCAAAAGAGCTGACAATACGTATCCTTACGAACATCTCTCCGGCTGTGGAGTCGGGTTCAAGTTTATGCAAGCCTATGCTCGGAGCAACAATTTGCCCGAATCCAAGCTCCTTCCTTTGCTCGACCTCGTGGCTGTCAGTATAGCTTCGGATATTGTCCCTATCATGGGAGAGAACCGCATACTCGCCTATTACGGACTGCGCCAACTTAATAAACGCCCTTGTCTCGGCTTGCAGGCTATAATAGATGTATGCGGTCTGAAGAAGCGAAGGATAGATATGAACGACATCGTCTTCAAGATCGGGCCTCGGATCAATGCTTCAGGTCGTATGATGAATGGGGGTAAGGCTGTGGAACTACTACTCTCTCAGGATGCTGTGGAAGCTCAAAGCCGAACGGCCAATATAGACGAATACAACGACCAACGCCGTGAGCTCGACAAGGATGTGACGGAACAGGCCATCGATATTTTGGGCGAGCTATCCGATGTGGACAAGAAGATCCTCGTTATCTACCGGCCGGAATGGCACAAGGGCGTTATCGGCATAGTGGCCAGCAGGATGACCGAACGCTATTCGCGCCCGACGATCGTGATGACTAAGAGCGGTGATTTCATTTCAGGCTCGGCTCGATCCGTAGGAGGGTTCGATGTGTACAAAGCCATCGAACATTGCAAGGACTTGCTGGTCAATTTCGGAGGGCATCCTTTTGCCTCCGGTCTGACGATCAAAGAAGAGAATCTGGAAACCTTCCGAAAGATGATTACGGACTATGCCGAAGAGGCTGTATCGCCGGAACTATTGGTGCCACAAATAGATGTAGATGCCGAAATATCCATCGAAGAGGTCAATTACAAACTTCTCGACAACCTCAAGCGGATGGGGCCATTCGGCCCGGAAAACTCCAAGCCGGTCTTTATATCCCGACAACTGTATGATGCCGGTGGTAGCAGGGCTGTAGGAAAAGCTTCCGAACACCTGAAGATAGATGTGAGAGTGGGATCGGGCGAACGCCATCCGGTGAGTGGGATTGCGTTTAATCAGGCCGGTCATTGCGATGAGATCAAAAACGGCTCATTTCGTCTTTGCTACACGATAGAAGAGAACGAATTCAACGGCAACAAATCATTGCAACTATTGGTGCGCGATATTAAGCCCGAAGAAGAATCTGCTATTAACGGAAAAACAAGA","5.90","-7.81","65314","MNYNWNLEPFTAEERSLGTIFCRELRLAPVVGCLLARRGIASVEEAKRFFRPRLEDLHDPFLMKDMDKAVARLNRAVGRKEKIMIYGDYDVDGTTAVALVYKYLRATGCSETQLDYYIPDRYDEGYGISYRGIDLAHSLGTKLIIVLDCGIKAVEKVAYAKSLDIDFIICDHHNPDETLPDAVAVLDAKRADNTYPYEHLSGCGVGFKFMQAYARSNNLPESKLLPLLDLVAVSIASDIVPIMGENRILAYYGLRQLNKRPCLGLQAIIDVCGLKKRRIDMNDIVFKIGPRINASGRMMNGGKAVELLLSQDAVEAQSRTANIDEYNDQRRELDKDVTEQAIDILGELSDVDKKILVIYRPEWHKGVIGIVASRMTERYSRPTIVMTKSGDFISGSARSVGGFDVYKAIEHCKDLLVNFGGHPFASGLTIKEENLETFRKMITDYAEEAVSPELLVPQIDVDAEISIEEVNYKLLDNLKRMGPFGPENSKPVFISRQLYDAGGSRAVGKASEHLKIDVRVGSGERHPVSGIAFNQAGHCDEIKNGSFRLCYTIEENEFNGNKSLQLLVRDIKPEEESAINGKTR","65205 66956","TIGR ID: PG0054","single-strand DNA-specific exonuclease","Cytoplasm","Numerous significant hit in gapped BLAST to single-strand DNA-specific exonuclease protein; e.g. residues 24-575 are 33% similar to (Z99118) single-strand DNA-specific exonuclease of Bacillus subtilis, residues 17-576 are 30% similar to (AE002180) single-stranded-DNA-specific exonuclease RecJ of Chlamydophila pneumoniae, residues 27-573 are 32% similar to(U28375) single-stranded DNA-specific exonuclease of Escherichia coli.This sequence is similar to BT3939.","
InterPro
IPR001667
Domain
Phosphoesterase, RecJ-like
PF01368\"[76-236]TDHH
InterPro
IPR003156
Domain
Phosphoesterase, DHHA1
PF02272\"[380-444]TDHHA1
InterPro
IPR004610
Family
Bacterial RecJ exonuclease
TIGR00644\"[27-571]TrecJ
noIPR
unintegrated
unintegrated
SSF64182\"[57-461]TSSF64182


","BeTs to 12 clades of COG0608COG name: Single-stranded DNA-specific exonucleaseFunctional Class: LThe phylogenetic pattern of COG0608 is AMTk-qvceB-hUJ--olinxNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 231-334 are 38% similar to a (EXONUCLEASE RECJ) protein domain (PD007759) which is seen in RECJ_HAEIN.Residues 337-515 are 31% similar to a (EXONUCLEASE RECJ PROTEIN) protein domain (PD009926) which is seen in O32044_BACSU.Residues 66-212 are 42% similar to a (PROTEIN EXONUCLEASE RECJ) protein domain (PD003186) which is seen in O32044_BACSU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Mar 22 14:43:55 MST 2000","Sat Jan 3 10:26:34 2004","Tue Jan 2 16:24:53 MST 2001","","Sat Jan 3 10:26:34 2004","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Mon Apr 17 12:08:41 MDT 2000","Sat Jan 3 10:26:34 2004","-48% similar to PDB:1IR6 Crystal structure of exonuclease RecJ bound to manganese (E_value = 5.3E_48);","","","Residues 76 to 236 (E-value = 5.2e-41) place PG0046 in the DHH family which is described as DHH family (PF01368)Residues 380 to 444 (E-value = 4.7e-14) place PG0046 in the DHHA1 family which is described as DHHA1 domain (PF02272)","Sat Jan 3 10:26:34 2004","34539926","","","","","","1","","","PG0054" "PG0047","66956","68008","1053","ATGAAAAAAACGCTCACGATGAATCTGGGAGGCAAGGTCTTCCACATCGACGAGGATGCCTATAACCTGCTGGAGGAGTATCTGCACAATTTAGCCTCACATTTCGATCGGGAGAACCATACGGATTGTAAGACGATCGAGGAATTCGAAGCCTACTTGTCCGACATGATGGTGGTGCGTTTGCATAGCGAACACGCCGTAATAAGTATCGGCCTGATTCGTGAAGTCATAGAAAAGATCAATACGGGAGAGCACTTTTCTTCCAATGAAGACAGTACGACTGCCGGATATTCTGCAGGGGCCGGTTACAGTCAGAAGGAGAGAGAAACTTCAGGCTATCGATACATGTCCGGGGAGGCTCCGAAGCGGAAGTTTTATCGCGACATGGATCATGCCGTTTTGTGTGGCGTGTGTAGCGGTATTGCTGCATATACGAGATGGAATGTGAATGCTATCCGTGTGATAGTCGTGTTGATGACGATTTTGGCTTCTCCGCTCTTTTGGATGATCATTATCGGTTATTTGGCCGTTTGGATGATAGCTCCACCGGCTATAACTGCTTCTCAGAAATTGGAGATGTATGGCGAGCCGATCACGGTAGAGAATATCGGTAAGCGAGTTGCTGCCGATGTCGATACCGGCCTTCACCGCAGGAATGCTTCTGTACTGAACACGCTGGGGTGTGTACTCAAAGGACTGTTCGTCCTCGTAGGAATAGGTCTTATCCTTGCTGTCGTTTTCGGTCTTTTCGGCCTTATATTAGAGCTGTTTGCAGACGGTTACGTGGCACATGCTCCTTTGACTTCGGACTGGATTTCTATTCCTTCTTGGATGATACTCTGTGCCACGATCTCCGTATTTATTATAGTAGCCGTCCCGGTTATGGCCATCGTTTTCAGACATCAAGGGCAGGGGAGAAACGGGATTATTCCTGCAGGTCTCAAATGGCTGGGCTTGACCATTTGGCTTGCTGCCGCTGTCCTATTGGCCGTAGTCTTCATATTGATAACCCGTGAACTGGGTTTGAATTTCTTCCTCCATCGCCATTCAGTA","6.80","-1.10","38872","MKKTLTMNLGGKVFHIDEDAYNLLEEYLHNLASHFDRENHTDCKTIEEFEAYLSDMMVVRLHSEHAVISIGLIREVIEKINTGEHFSSNEDSTTAGYSAGAGYSQKERETSGYRYMSGEAPKRKFYRDMDHAVLCGVCSGIAAYTRWNVNAIRVIVVLMTILASPLFWMIIIGYLAVWMIAPPAITASQKLEMYGEPITVENIGKRVAADVDTGLHRRNASVLNTLGCVLKGLFVLVGIGLILAVVFGLFGLILELFADGYVAHAPLTSDWISIPSWMILCATISVFIIVAVPVMAIVFRHQGQGRNGIIPAGLKWLGLTIWLAAAVLLAVVFILITRELGLNFFLHRHSV","66956 68008","TIGR ID: PG0055","possible stress-related transcriptional regulator","Inner membrane, Cytoplasm","No significant hits in gapped BLAST.","
InterPro
IPR007168
Domain
PspC
PF04024\"[122-186]TPspC


","BeTs to 3 clades of COG1983COG name: Putative stress-responsive transcriptional regulator PspCFunctional Class: K,TThe phylogenetic pattern of COG1983 is ---k--v-eb-----------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Jan 2 14:48:02 MST 2001","Tue Jan 2 14:48:02 MST 2001","Tue Jan 2 14:48:02 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon May 21 16:40:56 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 122 to 186 (E-value = 1.7e-08) place PG0047 in the PspC family which is described as PspC domain (PF04024)","Mon May 21 16:40:56 MDT 2001","34539927","","","","","","1","","","PG0055" "PG0048","68142","69839","1698","ATGAGCGATAATTGTCATTTGACTGAGAAATCATTTCGAAGTGTTGTCCTCCCGAAGGATTCCGTCCTGACTTTATTTTTCCGAATTTGTCTCCGAAACTGGTATTGGATACTCCTTTCTATTGTCCTTTTCGCCGGATGGGGTGTGGTGAAGTATAAGAGGGCCGGCATGGCTCCCAGCACCTATTTTACGACCGTAATGGCACGATTCCCCGAAGGCGTTCAGAGAGCATGCTCCGGTGGGTTGAATCCAAACTACAATGTATATGATAATTATACGCCTCGTTGGGAAGGTATTTCTGTATTAGATCAGAATTCTATTTTCAATGGTCTTTGTGCTACAAGTCTCGTAGAAAGAGTGGGAGAGAAAATACAGTACGATGTGAATTATTATCTCCCGGGCAAAGTGACCAATCATGATTTTTACGATCATACACCCATTCATTTGATCTTTTCGCCGGAAAGTGCACTTAGTTCTTTCACTGTAAAGATGAAGGTGGAAAAAGAGCATGCTACGATTCTCTCTTTGAAAGGAAAGCATGATGGAGAGAAAGTAAGCATAAAGGATATTCGGCTTCCTTATGGTATTTCTGTGGCTACTCCGATCGGGGAACTTAGGGTGGAGAAAACGCCACGATTCGACTATGAAACTTCGAAAAAAGAATTTTTTTCTAAGCCTATCATAATAGTTACTAAAGAATCAAAGGATAAGGCGCGAGTGCTTTACGATTCGGGGCTTAGAACCGAGGAGTTCAAGGGCCGGATAGAAATGAGGATAACGATAAAGAGATCTTTAGGCTTTGCCAGAGACTTTCTAGACGGAATTATAGAAGAATTCGATATCCAGTCTCGCGAGAAATATCGTCAAGAGGTCGAAGAAAAAATCGCTTTAGCGGAAAAAAGTCTAAGCGATCTTCAAAAGTCAGAGGGTCCTGTATCCGATTCTACTCTTGTCTCTTTGGGAATCACAGAAAAGGAGAGGAATGCTGACAGTGAAGCTCTACGGAAGAAGCTGGTGTCTATGATTAATGAATACAAAGTGGACCTTTTGACTGCTGATGCATCTTCGAGCCTGATTGTGTTGGACAAGACGAAGTCTGTTCCAGTGTCGAAGAAAGACTTATTGATCTTGATTATCAATTTGGTTATGGGGTTGTTTTTTCCCATGATTATCTTCTTTGTCTATATCATTCTTCGTAATCTCATATTGGTACCTTCGGAACTTGGAGAAAAAGCACTCAAGCGTATATTAGCTCTATTGAATGGAAATAAGAAGAGAGCAGCCACGATGCAACGGGACATCGACTTGCTTCGTCTCAATCTGACTGAATACTTACCGGATTCGGCTTCCTCTTGTATTATTCTGACAGGCATGAGCGGTAACGAACAGACCGAGAGGATCGCGACGGAATTGGTAAGTTCATTCGAGAAAAAGGGAAAGAATTTCCAAATTCTCCACCTTGAAGAATCGGACGCTGCACTCAAAGAGATGACTGCTTTGCGTGAAAAGGGTATATCTGTTTTCGCTATTGCTCCGAGTGTAGTACGTAGTGCTTTGGCTGTTGAAGTTAGCTTTGGGGCGGATGTTTCCTTGTTGTTGGCTGAAAGTATGCACTCGAAGAGAAATGATAAAGACGAAGTTGAAGCATTTATCTGCCAAAGCCGCTGTCCTGCTTTTGTGCTATGGTTGGATAGGTAT","8.10","4.65","63997","MSDNCHLTEKSFRSVVLPKDSVLTLFFRICLRNWYWILLSIVLFAGWGVVKYKRAGMAPSTYFTTVMARFPEGVQRACSGGLNPNYNVYDNYTPRWEGISVLDQNSIFNGLCATSLVERVGEKIQYDVNYYLPGKVTNHDFYDHTPIHLIFSPESALSSFTVKMKVEKEHATILSLKGKHDGEKVSIKDIRLPYGISVATPIGELRVEKTPRFDYETSKKEFFSKPIIIVTKESKDKARVLYDSGLRTEEFKGRIEMRITIKRSLGFARDFLDGIIEEFDIQSREKYRQEVEEKIALAEKSLSDLQKSEGPVSDSTLVSLGITEKERNADSEALRKKLVSMINEYKVDLLTADASSSLIVLDKTKSVPVSKKDLLILIINLVMGLFFPMIIFFVYIILRNLILVPSELGEKALKRILALLNGNKKRAATMQRDIDLLRLNLTEYLPDSASSCIILTGMSGNEQTERIATELVSSFEKKGKNFQILHLEESDAALKEMTALREKGISVFAIAPSVVRSALAVEVSFGADVSLLLAESMHSKRNDKDEVEAFICQSRCPAFVLWLDRY","68142 69839","TIGR ID: PG0056","conserved hypothetical protein","Inner membrane, Outer membrane, Cytoplasm","Matches weakly in gapped BLAST to gi:29348271 from Bacteroides thetaiotaomicron VPI-5482.","
noIPR
unintegrated
unintegrated
signalp\"[1-52]?signal-peptide
tmhmm\"[32-50]?\"[374-396]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Mar 1 08:50:07 2005","Tue Mar 1 08:55:40 2005","Tue Jan 2 14:50:18 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs in P.gingivalis.","Tue Jan 2 14:50:18 MST 2001","Tue Mar 1 08:50:07 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34539928","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Tue Mar 1 08:55:40 2005","","1","","","PG0056" "PG0049","69875","71056","1182","ATGGGTATTATCCGGAGCATATTAGACACCGATCTATATAAATTCACCACCGGCTATGCCTATGCCAAGCTATTCCCCAGAGCTTATGGCGAATTTCGCTTCATAGACCGTAATCGGCAGGGCTTTACGGAAGAATTTGCGGAGCTGGTGCGAGGTGAAATACGAGCGATGGCTGCTCTGTCTTTGACTCGTGATGAAAAAGAGTTTCTCCAACGAGAGCTTCCTTATCTTCCACCGATATATATCGATTTTCTCGATGGCTTCCGTTTCGATCCGGAAGAAGTTACAGTATCGATAGACGCACAAGGCCACTTGGATATACGAGCGCAAGGCCTTCTCTACCGAGTGACACTTTGGGAGACGCCTATCCTTGCCGTCATCAGCGAGCTGTACTATCGTTTTATTGGAGCCGAGCCGGATTGGAAACAAGTAGAAGAGGTAACTCGATCTAAAGGGGAGCTGATGCGAGAGCATCGAGCTACGTTCTCGATATTCGGTATGCGGCGGCGTTTCTCCCTTGAAGTGGAAGACCGTGTGACGGATATTCTCAAGCAGTATGCAGGTGAGAGTCTCTTTGGTACGAGCAACGTACACCTTGCCCATAAGCATGGGCTACGTGTTTCCGGCACACATCCACACGAATGGATACAATTCCATGGAGCTATTTACGGCTATAAGATGGCCAATTATGTAGCCATGGAGGATTGGATCAATGTCTATGACGGTGATCTTGGCACTGTGCTGACCGATACGTACACGACTGATGTCTTCATGCGCAATTTCAGTAAGAAGCATGCCATGCTCTTTACCAGTCTGAGACATGACAGTGGTGATCCCGAGATATTCATAGAAAAAGCAGTGCGACGATACGAAGAGCTGCGAGTGGATCCCAAAATCAAGTACATTATATTCTCTGACAGCCTCACTCCTCAGCGAGCTATAGAGATTCAAAAGTTGTGCGCCGGCAGGATTAAGGCCAGCTTTGGAATCGGTACCAATCTGACCAATGATGTGGGGGGGGGCGTAGAGCCGTTGAATATCGTAATGAAGCTCTGGAAGTGCAAGATGACGGCGAAAGACGACTGGCACTACTGTGTAAAGCTGAGCGACGTCGATGGTAAGCATACGGGAGAGCCGGAAGAAATCCTTTTGGCGATGAATACACTGGGTATCAAACCGAAA","6.50","-3.22","45457","MGIIRSILDTDLYKFTTGYAYAKLFPRAYGEFRFIDRNRQGFTEEFAELVRGEIRAMAALSLTRDEKEFLQRELPYLPPIYIDFLDGFRFDPEEVTVSIDAQGHLDIRAQGLLYRVTLWETPILAVISELYYRFIGAEPDWKQVEEVTRSKGELMREHRATFSIFGMRRRFSLEVEDRVTDILKQYAGESLFGTSNVHLAHKHGLRVSGTHPHEWIQFHGAIYGYKMANYVAMEDWINVYDGDLGTVLTDTYTTDVFMRNFSKKHAMLFTSLRHDSGDPEIFIEKAVRRYEELRVDPKIKYIIFSDSLTPQRAIEIQKLCAGRIKASFGIGTNLTNDVGGGVEPLNIVMKLWKCKMTAKDDWHYCVKLSDVDGKHTGEPEEILLAMNTLGIKPK","69875 71056","TIGR ID: PG0057","nicotinate phosphoribosyltransferase","Cytoplasm","Several hits in gapped BLAST to nicotinate phosphoribosyltransferase sequences, e.g. residues 3-374 are 38% similar to the enzyme from P.aeruginosa (strain PAO1)(AE004905).This sequence is similar to BT1913.","
InterPro
IPR006406
Family
Nicotinate phosphoribosyltransferase
PIRSF000484\"[2-394]TNAPRT
TIGR01514\"[3-393]TNAPRTase
InterPro
IPR007229
Family
Nicotinate phosphoribosyltransferase and related
PTHR11098:SF1\"[3-380]TNAPRTase
PF04095\"[162-393]TNAPRTase
noIPR
unintegrated
unintegrated
G3DSA:3.20.140.10\"[2-393]TG3DSA:3.20.140.10
PTHR11098\"[3-380]TPTHR11098
SSF54675\"[2-137]T\"[138-390]TSSF54675


","BeTs to 6 clades of COG1488COG name: Nicotinic acid phosphoribosyltransferaseFunctional Class: HThe phylogenetic pattern of COG1488 is a--kyqvcebR---gpol---Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 3-374 are 39% similar to a (NICOTINATE PHOSPHORIBOSYLTRANSFERASE) protein domain (PD025025) which is seen in PNCB_ECOLI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Jan 2 14:55:06 MST 2001","Tue Dec 9 16:23:14 2003","Tue Jan 2 14:55:06 MST 2001","","Mon Apr 23 16:24:30 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Apr 23 16:24:30 2001","-55% similar to PDB:1YIR Crystal Structure of a Nicotinate Phosphoribosyltransferase (E_value = 1.1E_59);-52% similar to PDB:1VLP Crystal structure of nicotinate phosphoribosyltransferase (yor209c) from Saccharomyces cerevisiae at 1.75 A resolution (E_value = 2.5E_51);-46% similar to PDB:1YBE Crystal Structure of a Nicotinate phosphoribosyltransferase (E_value = 2.5E_35);","","","Residues 5 to 393 (E-value = 4.5e-81) place PG0049 in the NAPRTase family which is described as Nicotinate phosphoribosyltransferase (NAPRTase) family (PF04095)","Mon Apr 23 16:24:30 2001","34539929","","","","","","1","","","PG0057" "PG0050","71059","71649","591","ATGCTGACGGGACTATTCTTCGGATCTTTCAATCCGATGCATATCGGTCATTTGGCACTGGCCAATTATCTGACAGAATACACTCCGATCGGACAGTTGTGGTTCGTACCAAGCCCGTTGAACCCTCTAAAAAATACCCAAGAGCTGCTCCCGTACGATCTGCGTTGCGAGCTGATAGAGCAAGCCATTCGTAAGGATATCCGTTTTCAAGTTCTGCGCATTGAAGAGCTGCTCCCTTCTCCTCACTACACGATACGGACGCTTCGTGCTCTCTCCATGCTGTATCCTCATCATCGGTTCGCCCTCCTGATCGGGGCGGACAACTGGCAGAGCTTCGATCGATGGAAGGATCATCATCGGCTGATGGCCAAATACGAGCTAATCATATACCCTCGGTTCGGCTATGAAGTAGACGATACGACGCTTCCGACCGGATGTCGATACATACATGATGCCCCGCGAATAGAAATCTCCTCTACCCAAATCAGGACAAGCATATTGGAAGGAAAAGATCTACGCTATTGGCTACCTCTCCCTGAGTCTCAGGACGTCATAGCATCTGCCCTGCAAAGTTGTCTGTCACCAAAACGC","7.60","1.78","23036","MLTGLFFGSFNPMHIGHLALANYLTEYTPIGQLWFVPSPLNPLKNTQELLPYDLRCELIEQAIRKDIRFQVLRIEELLPSPHYTIRTLRALSMLYPHHRFALLIGADNWQSFDRWKDHHRLMAKYELIIYPRFGYEVDDTTLPTGCRYIHDAPRIEISSTQIRTSILEGKDLRYWLPLPESQDVIASALQSCLSPKR","71059 71649","TIGR ID: PG0058","nicotinate-nucleotide adenylyltransferase (deamido-NAD(+) pyrophosphorylase) (deamido-NAD(+) diphosphorylase) (nicotinate mononucleotide adenylyltransferase) (NAMN adenylyltransferase)","Cytoplasm","Several hits in gapped BLAST to predicted nicotinate-nucleotide adenyltransferases, e.g. residues 4-177 are 29% similar to the enzyme from B.subtilis (Z99117). Residues 1-177 are 27% similar to NADD_BORBU.","
InterPro
IPR004820
Domain
Cytidylyltransferase
PF01467\"[5-165]TCTP_transf_2
InterPro
IPR004821
Domain
Cytidyltransferase-related
TIGR00125\"[3-68]Tcyt_tran_rel
InterPro
IPR005248
Family
Probable nicotinate-nucleotide adenylyltransferase
PTHR12039\"[1-177]TNAMN_adtrnsfrase
TIGR00482\"[5-190]TNAMN_adtrnsfrase
InterPro
IPR014729
Domain
Rossmann-like alpha/beta/alpha sandwich fold
G3DSA:3.40.50.620\"[2-177]TRossmann-like_a/b/a_fold
noIPR
unintegrated
unintegrated
SSF52374\"[1-177]TSSF52374


","BeTs to 11 clades of COG1057COG name: Predicted nucleotidyltransferasesFunctional Class: RThe phylogenetic pattern of COG1057 is ----Yqvcebr-ujgpol---Number of proteins in this genome belonging to this COG is 1","***** PR01020 (Lipopolysaccharide core biosynthesis protein signature) with a combined E-value of 5.3e-06. PR01020A 2-20 PR01020C 54-78","Residues 5-134 are 29% similar to a (PROTEIN CONSERVED INTERGENIC REGION) protein domain (PD009578) which is seen in O66452_AQUAE.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Mon Mar 12 11:13:43 MST 2001","Wed Jan 3 14:27:28 MST 2001","Mon Apr 23 16:43:37 2001","Mon Mar 12 11:13:43 MST 2001","Mon Mar 12 11:13:43 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Mar 12 11:13:43 MST 2001","-49% similar to PDB:1KAM Structure of Bacillus subtilis Nicotinic Acid Mononucleotide Adenylyl Transferase (E_value = 3.0E_18);-49% similar to PDB:1KAQ Structure of Bacillus subtilis Nicotinic Acid Mononucleotide Adenylyl Transferase (E_value = 3.0E_18);-48% similar to PDB:2H29 Crystal structure of Nicotinic acid mononucleotide Adenylyltransferase from Staphylococcus aureus: product bound form 1 (E_value = 3.5E_11);-48% similar to PDB:2H2A Crystal structure of Nicotinic acid mononucleotide adenylyltransferase from Staphylococcus aureus: product bound form 2 (E_value = 3.5E_11);","","","Residues 5 to 165 (E-value = 1.3e-27) place PG0050 in the CTP_transf_2 family which is described as Cytidylyltransferase (PF01467)","Mon Mar 12 11:13:43 MST 2001","34539930","","","","","","1","","","PG0058" "PG0051","71666","72046","381","ATGGAAGAAGAAAGAATGGTCACGCTCGTCTGCCTGCAAAGCAATGCTTTGGCAGAAGAACTCCAACGAATGCTTGCCGAGACAGGCATCACGGCCTATTTGCGTAATGAATACACCAACCGTATCATAGGCCCTATGTGCGATGTCGGCGGTGTGAGAATTGAATTGGCCGAAAGCGACCTCGAGGCTGCTCGTATTGTTTTGGCGGAGTCCGGATTGCCATTGGCAGAACCGGAGCAGACCCCAGTAGGGCGTATCAGCCGATGGGCAGACAACTTGCCTCTCCTGCGCAATCGTCCTTTGGAACAACGGTTATGGATCATTACGGGACTGCTCCTGGTCTTTCTCGGACTGCTTTCCATCATACTCTATCTCTTAAGC","4.50","-6.09","14229","MEEERMVTLVCLQSNALAEELQRMLAETGITAYLRNEYTNRIIGPMCDVGGVRIELAESDLEAARIVLAESGLPLAEPEQTPVGRISRWADNLPLLRNRPLEQRLWIITGLLLVFLGLLSIILYLLS","71666 72046","TIGR ID: PG0059","hypothetical protein","Cytoplasm, Inner membrane","No significant hits in gapped BLAST.","
noIPR
unintegrated
unintegrated
tmhmm\"[106-126]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Jan 10 13:03:16 MST 2001","Wed Jan 10 13:03:16 MST 2001","Wed Jan 10 13:03:16 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34539931","","","","","","1","","","PG0059" "PG0052","72285","73820","1536","ATGTATCATTGTTCTCGTAAGTCTCTCACCTTTTTTCTTGCCTTGCTATTTTGTGTTATGGTTCTTTTTAGCTGTGGCACCAAGCGAAAACTGCCTTCACAAGTCCACGCCGATTATCCCAAGCGGGAGTTCCGTGCAGCTTGGATCCAAACCGTCTATCAGGGAGAATACGCTCGTCTCTCTCCTGCCGAAGCACGTCGTCTGCTGATCGGGAGGTTGGATAAACTCAAAGAAGCCGGCTGTAATGCGATCATTTTCCAGATCAGGCCCGAGAGCGATGCCTGGTACGAATCCGCTATAGAGCCGTGGAGCCGTTTCCTGACAGGCCGACAGGGACAAGCCCCTACGCCTTTTTGGGATCCACTGGCTTTTATGGTCAGCGAATGTCACAAGCGAGGGATGGAACTGCATGCGTGGATCAATCCATACAGGGCCTCGACTTCGGGAACAGCAGGGCTTGCTCCCAACCATCCCTACCACCGTTATCCGCAATGGTTTGTCACCTACAACAACCAACTCTATTATGATCCCGGCGTGCCGGATTGTAGGGCCTATATCTGCCGTATTGTGCGAGATATTACGATGCGATATGACATCGATGCCATTCACATGGATGATTACTTCTATCCATATCCGGTAGCCGGTGCGGCTTTTCCCGATGACGACAGTTTTCGACGATACGGACAGGGATATACCTTTCAAACGAAGGGGGACTGGAGACGCGAGAATGTAAACAAGCTGGTGCATGAGATCAAACAGACCATACTGCAGTCAAAACCGTGGGTTCGTTTCGGAATCAGTCCCTTCGGCATATATCGGAACAAACGCACCTCCCCCTCCGGTAGCGAGACGGCCGGACTTCAGAACTATGATGACCTCTATGCCGATGTGCTACTGTGGCAAAAAAGAGGATGGATCGACTATGTTATCCCCCAAATCTATTGGGAGATCGGACACAAAGCCGCGGACTATGCCACGTTAGCTGAGTGGTGGGGGCGCAATTCTGTAGGAGCTGCGCATCTCTACTTCGGGCAAGATGTCAAACGAACGATGACCGCCCGACAACTGGCTTCCAAGATGCGGATGCAGCGATCCGTAGCAGTGGGGCATGCTCTTTGGCCGGCAGGCGAGGTAGTGAACAATACCGAAGGAGTGGCAGACAGCTTGCGTAGCCGTTACCACCGCTATCCCGCACTTATACCTGCTTATACGGCTATGCACCGACAGGCTCCTCCGAAAGTGAAAGGACTGCATGCCGCTTGGTTGCCATCAGGTTTTCACCTGATTTGGCTTGCTGAAAAGGATGAATCCGACCCTGTCAAAGCTTCCTACTTCGTGGTCTATGCCTTCCGTCATGGCATGAAGAAAACGATCCAACAAGCTGAAAACATTTGGGTGATTACTCCCGAAAACAGCATTCGCCTTCCCGACTCCCATGCTTCAGCCGATTATACTTATTGGGTGACGGCCGTAGATCGCTTCCACAACGAGAGCAAACCGGCCAAGCTGAAAGTCAAAGCCCGATACAAACGCCCC","10.20","23.02","59301","MYHCSRKSLTFFLALLFCVMVLFSCGTKRKLPSQVHADYPKREFRAAWIQTVYQGEYARLSPAEARRLLIGRLDKLKEAGCNAIIFQIRPESDAWYESAIEPWSRFLTGRQGQAPTPFWDPLAFMVSECHKRGMELHAWINPYRASTSGTAGLAPNHPYHRYPQWFVTYNNQLYYDPGVPDCRAYICRIVRDITMRYDIDAIHMDDYFYPYPVAGAAFPDDDSFRRYGQGYTFQTKGDWRRENVNKLVHEIKQTILQSKPWVRFGISPFGIYRNKRTSPSGSETAGLQNYDDLYADVLLWQKRGWIDYVIPQIYWEIGHKAADYATLAEWWGRNSVGAAHLYFGQDVKRTMTARQLASKMRMQRSVAVGHALWPAGEVVNNTEGVADSLRSRYHRYPALIPAYTAMHRQAPPKVKGLHAAWLPSGFHLIWLAEKDESDPVKASYFVVYAFRHGMKKTIQQAENIWVITPENSIRLPDSHASADYTYWVTAVDRFHNESKPAKLKVKARYKRP","72285 73820","TIGR ID: PG0061","YngK-related conserved hypothetical protein","Periplasm, Inner membrane, Cytoplasm","A few hits in gapped BLAST to conserved hypothetical proteins, e.g. residues 4-506 are 53% similar to the uncharacterized yngK protein of B.subtilis (gb|AAF08799.1|AF184956_6). Residues 45-401 are 57% similar to a conserved hypothetical protein of S.coelicolor (AL031541).This sequence is similar to BT1737.","
InterPro
IPR003790
Family
Protein of unknown function DUF187
PF02638\"[4-411]TDUF187
InterPro
IPR006050
Domain
DNA photolyase, N-terminal
SSF52425\"[327-454]TDNA_photolyase_N
InterPro
IPR008957
Domain
Fibronectin, type III-like fold
SSF49265\"[408-509]TFN_III-like
noIPR
unintegrated
unintegrated
PS51257\"[1-25]TPROKAR_LIPOPROTEIN
SSF51445\"[36-205]TSSF51445


","BeTs to 3 clades of COG1649COG name: Uncharacterized BCRFunctional Class: SThe phylogenetic pattern of COG1649 is -------Ceb-----------Number of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","Residues 122-314 are 52% similar to a (PROTEIN OF SECTION YNGK) protein domain (PD024118) which is seen in O35015_BACSU.Residues 42-115 are 44% similar to a (PROTEIN OF SECTION YNGK FROM BASES THE COMPLETE GENOME) protein domain (PD042721) which is seen in O35015_BACSU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Jan 10 13:10:40 MST 2001","Mon Dec 8 15:59:48 2003","Wed Mar 28 15:21:55 MST 2001","","Mon Mar 12 11:22:31 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 14-315 are 30% similar to PG0435, a conserved hypothetical protein.","Wed Mar 28 15:21:55 MST 2001","Mon Mar 12 11:22:31 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 4 to 411 (E-value = 2.6e-73) place PG0052 in the DUF187 family which is described as Uncharacterized BCR, COG1649 (PF02638)","Mon Mar 12 11:22:31 MST 2001","34539933","","","","","Wed Mar 28 15:21:55 MST 2001","1","","","PG0061" "PG0053","73828","75867","2040","ATGCCTCGTCGCAAGACAAAAAAGAGAGAGGAGGGCCTGTCCGCAATCGACCTTGCCAATGAGGAGATGGGCTATGTGCTCAGCCTGATCGAACGCACAGACCAAAGCCTCTTCCTGACCGGCAAGGCCGGAACGGGTAAGTCCACACTGCTTCGGCATATCTGTGCTACGACGCATAAGAAGTTTGTCGTGCTTGCGCCTACCGGCCTTGCGGCACTGAATGTCGGAGGGCAGACGCTCCACTCGTTTTTCAAACTGCCTCTTCGCCCGATTCCGCCGAACGATCCCGATTTGAGTACTCGTGACAGACGGGTGTTCGATGTGTTTCGCTACACGAACGAACACAAGAAACTGATCCGAAGTCTCGATCTGATTATCATAGACGAGGTGTCCATGGTTCGAGCGGATGTCATCGACGCCATCGATAAGCTCCTCGGTATATACAGAGGCCGGCAAGAAAGGCCTTTCGGCGGTGTGCAGATGTTGTTCGTGGGAGATCTTTATCAGCTTGAACCTGTGGTAACGGCAGATGATGCCGACATACTGAAACGATTTTATCCCAACCCCTTCTTTTTCTCTTCCGAGGCACTGCGAGCAACCCCTCCCGTCACAGTGGAGCTGACCAAGGTGTATCGACAGACAGAGCAAGCATTCGTGCAGATACTCGATCGAATCCGATCGGGCAGGCTTACCGAACAGGATCTTCAGGACATCAATAAATGTGTCAATCGCCATTACGAGCCGCCGAAGGACGAACCGGTCATCACACTTGCCACCAAACGCCGGCACGTGAGTTACATCAATGAGCGGCAATTGGAACAGCTGCAGGGCGACCCCGTCACCCTGTACGGCACTATCGAAGGCGATTTTCCCTCCTCATCCTTGCCGACAGAGGAGGAACTTACACTGAAGCAGGATGCTCAGGTGATATTCGTCTCCAACGACAAAGATCGTCGATGGGTCAATGGAACACTCGGCATAGTAGCCGGTTTCGATCAGGAGAGTGAAACGATAGATGTATGTCTCAGCACCGGAGAAGTTGTAACGGTGGAACCATGCATCTGGGACAATAAACGCTTCTCCTATAATGAGCAAGCCAATAAAGTGGAGGAGGAAGTACTGGGAAGATTCGTTCAGTATCCGCTCAAATTGGCTTGGGCGATCACGGTACACAAGAGCCAGGGACTGACGTTCGATCGTGTGATCATCGATTTCTCGGAAGGCACCTTTGCCGGCGGTCAGGCCTATGTAGCTCTCAGCCGGTGTCGTTCGCTCGAAGGTATGGTGCTGCGTGCACCGCTTGCCGGTCGGGATGTGATCGTCCGTCGTGAGATCATCGATTTTTATTCGCGAGCCAATGATTTGGAGATCATCAATGGCTCACTCCTGCGTGCCGAAGCAGAACGCGAGTATGCACAAGCCCTCCGACTGTGGAATGCTCGCCATTATACGGAAGCCATCGGTGCCTTTTCGCAGGCATTAGCGAGGAAGAACGAATTGGACGACCCGCTCTTTCGTCGCCTGCTGGTGAGTAAGCTGTTCGAAATGGAGTACGCACGCCGTCGCGAGGAAGAGCTGCGTCGCGAGTTGGCCGAGCAACGCGAGGTTATGCGTCGGCTGGCCAAAGAATATGTGCTGATGGGCAATGACTGTATCACAGAGGCTCATGATGCCCATGCTGCTATTCGCTGCTACGACAAGGCCCTTACGCTCTACCCCGACTATGTGGAAGCCTTAGTCAGGAAAGGCAAGACATTAGCCGGGCTGAATGAGATAACCACTTCCCTCTCCACCTTGAACCAAGCCATAGCCATTGCTCCGATGGACTTTACTGCCAGATTCACATTGGGACAAGTCTTGGAGAAATTCGCTTACTATGAAGAAGCCCTCGATGCGTACCGACAAGCTGATGGACTCAACTCCCAAAGTCGCTCATTGCTCAAACGGCTCATTGCCCTCTGCGAGGAGCTGGACGAAGAAGACGAAGCCAATCTCTACCGAATCCGCCTACGCAAAAACCGAGATCAGACCGGACATAAA","6.20","-5.63","77679","MPRRKTKKREEGLSAIDLANEEMGYVLSLIERTDQSLFLTGKAGTGKSTLLRHICATTHKKFVVLAPTGLAALNVGGQTLHSFFKLPLRPIPPNDPDLSTRDRRVFDVFRYTNEHKKLIRSLDLIIIDEVSMVRADVIDAIDKLLGIYRGRQERPFGGVQMLFVGDLYQLEPVVTADDADILKRFYPNPFFFSSEALRATPPVTVELTKVYRQTEQAFVQILDRIRSGRLTEQDLQDINKCVNRHYEPPKDEPVITLATKRRHVSYINERQLEQLQGDPVTLYGTIEGDFPSSSLPTEEELTLKQDAQVIFVSNDKDRRWVNGTLGIVAGFDQESETIDVCLSTGEVVTVEPCIWDNKRFSYNEQANKVEEEVLGRFVQYPLKLAWAITVHKSQGLTFDRVIIDFSEGTFAGGQAYVALSRCRSLEGMVLRAPLAGRDVIVRREIIDFYSRANDLEIINGSLLRAEAEREYAQALRLWNARHYTEAIGAFSQALARKNELDDPLFRRLLVSKLFEMEYARRREEELRRELAEQREVMRRLAKEYVLMGNDCITEAHDAHAAIRCYDKALTLYPDYVEALVRKGKTLAGLNEITTSLSTLNQAIAIAPMDFTARFTLGQVLEKFAYYEEALDAYRQADGLNSQSRSLLKRLIALCEELDEEDEANLYRIRLRKNRDQTGHK","73828 75867","TIGR ID: PG0062","helicase-related protein","Cytoplasm","Several hits in gapped BLAST to helicases and helicase homologs in eukaryotes: residues 4-466 are 46% similar to residues 296-792 of RRM3/PIF1 helicase homolog in yeast (AF074944).This sequence is similar to BT4130.","
InterPro
IPR001440
Repeat
Tetratricopeptide TPR_1
PF00515\"[541-575]T\"[576-609]TTPR_1
InterPro
IPR003593
Domain
AAA+ ATPase, core
SM00382\"[33-341]TAAA
InterPro
IPR011990
Domain
Tetratricopeptide-like helical
G3DSA:1.25.40.10\"[466-679]TTPR-like_helical
InterPro
IPR013026
Domain
Tetratricopeptide region
SM00028\"[541-575]T\"[576-609]T\"[610-643]TTPR
PS50005\"[542-575]T\"[576-609]T\"[610-643]TTPR
PS50293\"[541-643]TTPR_REGION
noIPR
unintegrated
unintegrated
PTHR23274\"[1-479]TPTHR23274
SSF48452\"[465-663]TSSF48452
SSF52540\"[30-421]TSSF52540


","BeTs to 5 clades of COG0507COG name: ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I memberFunctional Class: LThe phylogenetic pattern of COG0507 is -m--Y---ebrh----o-IN-Number of proteins in this genome belonging to this COG is 3","No significant hit to the Blocks database.","Residues 18-170 are 32% similar to a (PROTEIN HELICASE T2L5.8 T13P21.15 PUTATIVE C11G6.2) protein domain (PD092153) which is seen in Q17908_CAEEL.Residues 20-173 are 36% similar to a (HELICASE PROTEIN ATP-BINDING DNA DNA-BINDING) protein domain (PD000627) which is seen in O74239_SCHPO.Residues 301-425 are 37% similar to a (PROTEIN HELICASE PIF1 ATP-BINDING) protein domain (PD008646) which is seen in O61299_CAEEL.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Jan 10 13:35:17 MST 2001","Mon Jan 5 11:01:26 2004","Wed Mar 28 15:23:54 MST 2001","","Wed Mar 28 15:23:54 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 25-462 are 43% similar to PG1787, a helicase-related protein. ","Wed Mar 28 15:23:54 MST 2001","Wed Mar 28 15:23:54 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Mar 28 15:23:54 MST 2001","34539934","","","","","","1","","","PG0062" "PG0054","77146","75971","1176","ATGAAAGCAATCTTCATAAGCATATTGGCCTTTTTGGTGACTGCTCCCGTTTGGGCACAAAACGGCATGAATGATGTACTGCATGCCATCGAAGAGAACAATACCGCGTTGAAAGCTCTTCGAGAGAGCACAGATGCAGAAAAACTGAACAACCGCACCGGAATATTCCTGTCCAATCCGGAAGTGGAGGTCGGCTACCTATGGGGAAACCCTGCGGAAATCGGCAATCGGACGGACTTCAGCATTACGCAGAGTGTCGATATTCCTACTATCACGGGTATGAAGAGTCGTGCAGCCAAGATGCAAGACAAACTCTTGGACTGGCGATACAAAACGGATCGCATGAACATCCTGCTGGAGGCCAAGACTTGCTGTATCGAATTGATATACAACAAAGCCCTTTTGCTCGAATTGGAGCGTCGGCTCCGACATGCCCGCACCATTGCCGAAGGGTACGAAGCGCGCCTCAAAGCCGGTGATACCAACCAGTTGGAATACAACAAGATCAAGCTGAACCTCGCCTCCGTCGAAGGTGAAATATCCCGCGTGCAGGTGGATCGAAAGGCTCTGCTCGTCCGGCTCGAGCGGTTGAACGGAGGCAAAGAGATCGCATTCGACGAAAGCCGCTATACGGAGATCGTGCTACCGCAGTCTTTCTCTGTATGGTTCGATCAGGTAGCGGAAAAGAATCCGCAGTTGGCATATGCCCGAGAAGAGGTGGCCGCAAGCAAGCAGCAGGTAGCATTGAGCCGAGCAGCAGGATTGCCGGTTTTCTCTGCCGGCTATGTAAGCGAGAAAGTCGGGAGCGAAAGGTTTCAGGGAGTATCTTTCGGAATATCCGTGCCTCTGTGGGAAAACAAAAACCGCGTCAAACAAGCGAAAGCTTCGGTCAGAGCCGCAGAAATGCGTGAGACGGACAGTCGGCAGCAGCTATACAGCGAGCTTCAGCTCCTGTACGAACGTGCCGCCGGGCTAAAGACCACGGCGGAAAATTATCGCAGACTGCTGACGACCTCCGACAATGCCGACCTGCTCAAGAAAGCATTGGATGCAGGAGAGATCTCCTTGCTGGACTATATCGTCGAAATGGGACTCTACTACGATACCGTCAGTCGGGCGATGGAAGCCGAACGCGACTATCAACAGGCATTTGCCGAACTCTCAGCAGTCGATTTG","5.50","-3.57","44183","MKAIFISILAFLVTAPVWAQNGMNDVLHAIEENNTALKALRESTDAEKLNNRTGIFLSNPEVEVGYLWGNPAEIGNRTDFSITQSVDIPTITGMKSRAAKMQDKLLDWRYKTDRMNILLEAKTCCIELIYNKALLLELERRLRHARTIAEGYEARLKAGDTNQLEYNKIKLNLASVEGEISRVQVDRKALLVRLERLNGGKEIAFDESRYTEIVLPQSFSVWFDQVAEKNPQLAYAREEVAASKQQVALSRAAGLPVFSAGYVSEKVGSERFQGVSFGISVPLWENKNRVKQAKASVRAAEMRETDSRQQLYSELQLLYERAAGLKTTAENYRRLLTTSDNADLLKKALDAGEISLLDYIVEMGLYYDTVSRAMEAERDYQQAFAELSAVDL","77146 75971","TIGR ID: PG0063","possible alkaline protease secretion protein","Outer membrane, Cytoplasm, Periplasm","No strong hits in gapped BLAST, however PGoo54 is weakly related to APRF_PSEAE. When APRF_PSEAE is blasted against the Porgi genome, several weak hits are observed to PG proteins, in particular PG0054, PG1455, PG0611 and PG0083 (see paralogs). Residues 22-387 are 36% similar to APRF_PSEAE.","
InterPro
IPR003423
Family
Outer membrane efflux protein
PF02321\"[23-199]T\"[219-392]TOEP
noIPR
unintegrated
unintegrated
SSF56954\"[21-387]TSSF56954


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Jan 18 15:00:29 MST 2001","Thu Jan 18 15:00:29 MST 2001","Thu Jan 18 14:41:03 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis. Very weak similarity is noted to PG1455, PG0611 and PG0083, all of which in turn are weakly related to the alkaline protease secretion protein APRF (See BLAST).","Thu Jan 18 14:52:04 MST 2001","Mon Apr 23 17:07:43 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 219 to 392 (E-value = 4.4e-08) place PG0054 in the OEP family which is described as Outer membrane efflux protein (PF02321)","Mon Apr 23 17:07:43 2001","34539935","","","","","","1","","","PG0063" "PG0055","80283","77167","3117","ATGCTGAACAAGATCATTCGGTTCTCTCTGAACAACCGGCTGACCATATTGGTAGCATCCGTACTGCTGATGCTGGTCGGCACCTATACGGCCTCCAATATGGAGGTGGACGTATTCCCTGACTTGAACGCTCCTACCGTCGTAGTGATGACGGAGGCTACCGGTATGGCACCCGAGGAAGTGGAACGCCTCGTAACCTTCCCCGTCGAGACGGCCGTCAATGGAGCTACCGACGTGCGTCGCGTGCGCTCGTCTTCCACTACGGGCTTCTCTATCGTTTGGGTGGAATTCGACTGGGGGACGGATATTTATCGTGCTCGTCAGATCGTGTCGGAAAAGCTGGCCGTGGTCGGTGCCGATCTGCCGGACAATGTGGGCAAACCTACGCTCGGCCCCCAATCCTCCATCCTCGGCGAAGTCATGATTATCGGACTTACGGCCGACAGCACCTCTCTCCAAGACCTCCGTACTTTGGCCGACTGGACGATCCGTCCGCGCTTGCTCTCGATCGGAGGTGTGGCACAGGTGACAGTACTCGGAGGCGACATCAAGGAATATCAGATACTGCTCAATCCCGAAAGGATGAAGCACTACGGTATCACGCTGGCCGAAGTACGTGCTGCCGTCGACCAAATGAACCGCAATGCATCGGGTGGCGTACTGTATGAATACGGCAACGAATATATCATTTGCGGACTCCTCTCCACGAACGATGCTGCCGCATTGGGTAAGACACTGGTAAAAAGTCTCGATGATATTCCCATCATGCTCGAAAGCGTGGCAGAGGTAAGGGTGGGCAATAAGGCACCGAAGTTGGGCCTTGCTTCCGAGCGAGGACAATCTGCCGTACTCGTGACCATCACCAAACAGCCGGCGACGAGTACACTGGAGCTGACCGAAAGGTTGGATCGCTCTCTGGCCGATCTGCAAAAGGCTCTCCCCTCCGATGTGAAAGTGAGTACAGACATATTCCGTCAAGAGCGTTTCATCGAAAATTCTATCAGCAACGTACGAAAAGCTCTGTACGAAGGAGGCATATTCGTCGTCATCGTATTATTCATTTTCCTGATGAATGCTCGTGCCACGATCATTTCGCTGGTCACCATTCCCCTTTCGCTGGTTGCATCCTTTTTGACACTCAAACTGATGGGACTGACCATCAATACGATGAGTCTCGGAGGTATGGCTATCGCCATCGGTTCGCTGGTGGACGATGCCATCGTGGACGTGGAGAATGTATACAAACGCCTGCGCGAAAACCGTATGAAGCCTCGCGAAGAACAGGACACGGTGCTCAACGTCATATTCGAAGCCTCCAAGGAGGTGCGTATGCCGATCCTTAACTCCACCTTTATCATTATCGCCAGCTTCGTACCGCTGTTTTTCCTCTCCGGTATGGAGGGACGTATGCTGGTTCCGCTTGGGATCGCCTTTATCATTGCCCTTCTGGCATCTACCATTGTAGCCCTTACGCTTACCCCCGTACTCTGTAGCTATTTGCTGGCTAAGAGAAAGAAAGATGATTCGCCGGAAAAGGAACCCATCGTGGCCAAGAAACTGAAAGGCTGGTACGGACAGGCCCTGCAGTGGTCTCTTGGCAACACGAAAAAAGTATTGCTTATGACCGGTGGTGTACTGGTGGCTGCACTTATCGTCTTCTTCACCCTCGGACGCAGTTTTCTGCCTCCATTCAACGAAGGGTCGTTCACCATCAACGTAAGCACTCTACCGGGCATATCGCTGGAGGAAAGCGACAGAATGGGGCGTATGGCAGAAGAAATCCTGCTTTCAGTCCCCGAAGTACAGACCGTGGGGCGTAAGACGGGACGCGCCGAACTGGACGAGCACGCACTGGGAGTCAATGTGTCGGAAATAGAGGTGCCCTTCGTCCTCAAGGATCGTTCCAAAGACGAAGTCCTTGCTGACATTCGCGAGAAGCTCAAAGTGCTGCCGGGTGTGAATATCGAAATAGGCCAGCCCATTTCGCACCGCATCGATGCCATGCTCTCGGGTACGCGCGCCAATATCGCCATCAAACTATTCGGTCCGGATCTGAACCGGCTGTTTGCAATCGGGAATCAGATCAAGACTTCCGTTCACGATGTGAAGGGAGTGGCGGATCTGAATGTGGAGCAGCAGGTGGAGCGACCGCAACTCAAGATCGTACCGAAGCGTGAGATGCTGGCCAAATACGGACTCACACCGGCGAGTTTTGCCGAAATAGTCAATGTGATGCTTGCAGGAGAAGTGGTTTCGCAGGTGTACGAAGGCAATCGTTCGTTCGATCTTTCTCTGAAGGTGAACGATGAAAGCCGCGAGAGCGCAGACCGCATCCGAGATCTCATCATAGACGCCGGCGGACGGAAGATACCCTTCGCTTATGTGGCCGATATAGTGTCGGCTTCGGGGCCGAATACGATCAACCGCGAGAACGTTTCCCGAAAAATAGTCGTTTCAGCCAATGTGGCCGGTCGAGACCTGCGCAGCGTTGTCAATGATATTCAGGAAAGGATCGATGCCGATATTACGCTTCCCGAGGGCTATCATATCGAGTATGGAGGGCAGTTCGAAAGCGAACAGGCAGCATCGCGCACCCTTCTCGTCACCTCCGTTTTTTTCATTTTGGTGATCTTCCTGCTGCTTTTCAATCAGTTCCGAAGTCTCTCTCAATCGGCGGTCAGCCTGCTCAACCTGCCTTTGGCTCTTATCGGAGGTGTCTTTGCCATCTTCTTCACAGGTGGGATTATCAGTATTCCGGCCATCATCGGCTTTATCTCCCTGTTCGGAATAGCCACGCGCAACGGTATGCTGCTCATTTCGCGTTACAACGATTTGCAGCAAGCAGGCCTTTCACCATACGAAAGTGTCCTGCGAGGTTCGCTGGATCGTCTGAATCCGATCCTGATGACAGCCCTTACATCCGGGCTCGCTCTTATACCGCTGGCACTGGGGGGCGAACTTCCGGGCAACGAGATCCAGAGTCCGATGGCGAAGGTCATACTCGGGGGATTGTTTTCCTCCACCATTCTCAACGCTTTTATCGTTCCGATTATGTATCTGCTGACCGACAAAAGCTATCGAGAAAGGACGTTTCGAAATCGACAACTAACAATCGAA","5.70","-5.78","113485","MLNKIIRFSLNNRLTILVASVLLMLVGTYTASNMEVDVFPDLNAPTVVVMTEATGMAPEEVERLVTFPVETAVNGATDVRRVRSSSTTGFSIVWVEFDWGTDIYRARQIVSEKLAVVGADLPDNVGKPTLGPQSSILGEVMIIGLTADSTSLQDLRTLADWTIRPRLLSIGGVAQVTVLGGDIKEYQILLNPERMKHYGITLAEVRAAVDQMNRNASGGVLYEYGNEYIICGLLSTNDAAALGKTLVKSLDDIPIMLESVAEVRVGNKAPKLGLASERGQSAVLVTITKQPATSTLELTERLDRSLADLQKALPSDVKVSTDIFRQERFIENSISNVRKALYEGGIFVVIVLFIFLMNARATIISLVTIPLSLVASFLTLKLMGLTINTMSLGGMAIAIGSLVDDAIVDVENVYKRLRENRMKPREEQDTVLNVIFEASKEVRMPILNSTFIIIASFVPLFFLSGMEGRMLVPLGIAFIIALLASTIVALTLTPVLCSYLLAKRKKDDSPEKEPIVAKKLKGWYGQALQWSLGNTKKVLLMTGGVLVAALIVFFTLGRSFLPPFNEGSFTINVSTLPGISLEESDRMGRMAEEILLSVPEVQTVGRKTGRAELDEHALGVNVSEIEVPFVLKDRSKDEVLADIREKLKVLPGVNIEIGQPISHRIDAMLSGTRANIAIKLFGPDLNRLFAIGNQIKTSVHDVKGVADLNVEQQVERPQLKIVPKREMLAKYGLTPASFAEIVNVMLAGEVVSQVYEGNRSFDLSLKVNDESRESADRIRDLIIDAGGRKIPFAYVADIVSASGPNTINRENVSRKIVVSANVAGRDLRSVVNDIQERIDADITLPEGYHIEYGGQFESEQAASRTLLVTSVFFILVIFLLLFNQFRSLSQSAVSLLNLPLALIGGVFAIFFTGGIISIPAIIGFISLFGIATRNGMLLISRYNDLQQAGLSPYESVLRGSLDRLNPILMTALTSGLALIPLALGGELPGNEIQSPMAKVILGGLFSSTILNAFIVPIMYLLTDKSYRERTFRNRQLTIE","80283 77167","TIGR ID: PG0064","cation efflux protein","Inner membrane, Cytoplasm","Numerous hits in gapped BLAST to cation efflux proteins, e.g. residues 1-1019 are 59% similar to the protein in Synechocystis (D64005).This sequence is similar to BT2039.","
InterPro
IPR001036
Family
Acriflavin resistance protein
PR00702\"[12-36]T\"[40-58]T\"[333-356]T\"[360-381]T\"[388-412]T\"[551-568]TACRIFLAVINRP
PF00873\"[5-1023]TACR_tran
InterPro
IPR004763
Family
Heavy metal efflux pump CzcA
TIGR00914\"[1-1039]T2A0601
noIPR
unintegrated
unintegrated
SSF82693\"[42-130]T\"[136-326]T\"[564-660]TSSF82693
SSF82714\"[184-268]T\"[717-803]TSSF82714
SSF82866\"[292-502]T\"[798-1029]TSSF82866


","BeTs to 8 clades of COG0841COG name: Cation efflux system proteinFunctional Class: PThe phylogenetic pattern of COG0841 is -----QvCEb-hUJ--o---xNumber of proteins in this genome belonging to this COG is 2","***** PR00702 (Acriflavin resistance protein family signature) with a combined E-value of 1.3e-36. PR00702A 12-36 PR00702B 40-58 PR00702C 333-356 PR00702D 360-381 PR00702E 388-412 PR00702F 449-472 PR00702G 474-497 PR00702H 551-568","Residues 619-850 are 40% similar to a (PROTEIN TRANSMEMBRANE EFFLUX TRANSPORT) protein domain (PD001911) which is seen in Q55935_SYNY3.Residues 403-501 are 34% similar to a (PROTEIN CATION EFFLUX SYSTEM) protein domain (PD007644) which is seen in O25622_HELPY.Residues 351-561 are 30% similar to a (PROTEIN MITOCHONDRION TRANSMEMBRANE OXIDOREDUCTASE NAD) protein domain (PD000148) which is seen in O51165_BORBU.Residues 930-1019 are 46% similar to a (PROTEIN TRANSMEMBRANE MEMBRANE PUTATIVE TRANSPORT INNER) protein domain (PD000801) which is seen in Q55935_SYNY3.Residues 513-613 are 34% similar to a (PROTEIN EFFLUX CATION SYSTEM) protein domain (PD002079) which is seen in Q9ZKN2_BBBBB.Residues 1-248 are 39% similar to a (PROTEIN TRANSMEMBRANE EFFLUX TRANSPORT) protein domain (PD001810) which is seen in Q55935_SYNY3.Residues 251-343 are 38% similar to a (PROTEIN TRANSMEMBRANE EFFLUX TRANSPORT) protein domain (PD002081) which is seen in Q55935_SYNY3.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Jan 19 09:03:49 MST 2001","Wed Dec 10 14:22:16 2003","Wed Mar 28 15:25:58 MST 2001","Wed Mar 28 15:25:58 MST 2001","Wed Mar 28 15:25:58 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 5-1019 are 25% similar to PG0493, a predicted cation efflux protein.","Wed Mar 28 15:25:58 MST 2001","Wed Mar 28 15:25:58 MST 2001","-42% similar to PDB:1IWG Crystal structure of Bacterial Multidrug Efflux transporter AcrB (E_value = 1.2E_61);-42% similar to PDB:1OY6 Structural Basis of the Multiple Binding Capacity of the AcrB Multidrug Efflux Pump (E_value = 1.2E_61);-42% similar to PDB:1OY8 Structural Basis of Multiple Drug Binding Capacity of the AcrB Multidrug Efflux Pump (E_value = 1.2E_61);-42% similar to PDB:1OY9 Structural Basis of Multiple Drug Binding Capacity of the AcrB Multidrug Efflux Pump (E_value = 1.2E_61);-42% similar to PDB:1OYD Structural Basis of Multiple Binding Capacity of the AcrB multidrug Efflux Pump (E_value = 1.2E_61);","","","Residues 5 to 1023 (E-value = 9.5e-285) place PG0055 in the ACR_tran family which is described as AcrB/AcrD/AcrF family (PF00873)","Wed Mar 28 15:25:58 MST 2001","34539936","","","","","","1","","","PG0064" "PG0056","81277","80306","972","TTGCAGGTAGAGGAAGTGGCACCTGCCTCTTTCAACTATGTGATCAAAACAAGCGGACAGATCCTCTCCGCCCAAGGCGATGAAGCCACCATAGCAGCTACGGCCAACGGCATCGTTTCGTTTGCCGGTTCGGCCTTTACAGAAGGAGCCTCCGTACGAGCAGGAGAGTGCATCGTACGCATCTCTGCCAAAAATCTGCCGGATGGAGATCCCGTAACCAAGGCAAAGATCGCTTACGAATCGGCTCAAAAGGAACACCGGCGGGCTGAAAAGCTGGTAAAAGATCAGATCATTTCGAACAAGGAATACGAACAGACTTGCAGGGACTATCAGACAGCCAAGACCATATACGAAGCCCAAGCATCCGGCACCGGTGCGGGAGGGGTCAGCGTGGCGTCTCCTATGAGCGGATATATCAAAAACCGCATGGTCAACCAGGGCGAATACGTATCCGTAGGCCAACCCATAGCCACCGTGTCACAAAACCGCCGGTTGCAGCTACGGGCGGAGGTATCGGAGAGCCATTTCAAGAATGTCCGCAATGTCTCCGGTGCCAACTTCCAGACTTCATACGACAACAAGCTCTACGAGCTGTCCGATCTGAACGGAAGGCTGCTCTCGTTCGGGCGTGCATCCACACAGTCATCCTACATCCCCGTTACATTCGAATTCGACAATGTGGGCGATGTCGTACCCGGCTCTTTCGTCACTGTGTATCTGCTCTCCAATACTCAGGAAGAAGTTCTCTCCGTTCCCGTATCGGCCATTACCGAAGAGCAGGGATTGCACTTCGTCTATCTGCGGTTGGCCGAAGAGGAGTATCAGAAACAAGAGGTTACCCTCGGGCAGAGCAACGGACGTCGTGTGCGAATCCTGTCCGGACTGAAAGCCGGAGACAATGTTGTGACTCATGGAGTATATCAGGTGAAACTGGCCGCTACTTCGTCCGTAATGCCTGAAGGTCATACTCAC","6.30","-2.63","35115","LQVEEVAPASFNYVIKTSGQILSAQGDEATIAATANGIVSFAGSAFTEGASVRAGECIVRISAKNLPDGDPVTKAKIAYESAQKEHRRAEKLVKDQIISNKEYEQTCRDYQTAKTIYEAQASGTGAGGVSVASPMSGYIKNRMVNQGEYVSVGQPIATVSQNRRLQLRAEVSESHFKNVRNVSGANFQTSYDNKLYELSDLNGRLLSFGRASTQSSYIPVTFEFDNVGDVVPGSFVTVYLLSNTQEEVLSVPVSAITEEQGLHFVYLRLAEEEYQKQEVTLGQSNGRRVRILSGLKAGDNVVTHGVYQVKLAATSSVMPEGHTH","81553 80306","TIGR ID: PG0065","conserved hypothetical protein (possible membrane fusion protein) (possible cation efflux membrane fusion protein)","Outer membrane, Inner membrane, Extracellular","Several weak hits in gapped BLAST to hypothetical proteins, putative membrane proteins, and metal cation efflux membrane proteins, e.g. residues 46-318 are 25% similar to (AP002560) putative membrane protein of E. coli, residues 46-318 are 25% similar to (P76397) hypothetical protein of E. coli,residues 10-322 are 24% similar to the metal cation efflux membrane protein, czcB protein, from Pseudomonas aeruginosa (AE004679).This sequence is similar to BT2038.","
InterPro
IPR006143
Family
Secretion protein HlyD
TIGR01730\"[3-318]TRND_mfp: efflux transporter, RND family, MF


","BeTs to 7 clades of COG0845COG name: Membrane permeases, predicted cation efflux pumpsFunctional Class: RThe phylogenetic pattern of COG0845 is -----QvCEB-hUJ--ol--xNumber of proteins in this genome belonging to this COG is 6","No significant hit to the Blocks database.","Residues 137-306 are 27% similar to a (PROTEIN MEMBRANE RESISTANCE PRECURSOR) protein domain (PD000988) which is seen in YEGM_ECOLI.","","Tue Jun 12 16:05:17 MDT 2001","","Tue Jun 12 16:05:17 MDT 2001","Tue Jun 12 16:05:17 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Tue Jun 12 16:05:17 MDT 2001","Tue Jun 12 16:05:17 MDT 2001","","Tue Jun 12 16:16:50 MDT 2001","Tue Jun 12 16:16:50 MDT 2001","Wed Dec 10 14:20:27 2003","Tue Jan 7 13:58:54 2003","","Tue Jan 7 13:58:54 2003","yes","Fri Feb 20 15:41:32 MST 1998","Residues 22-3069 are 22% similar to PG0492, a cation efflux membrane fusion protein. Residues 131-302 are 24%) similar to PG0257, membrane permease. Residues 1-303 are 18% similar to PG0612, possible membrane permease. Residues 27-301 are 25% similar to PG1454, putative periplasmic protein.","Tue Jun 12 16:16:50 MDT 2001","Wed Mar 28 15:30:10 MST 2001","-42% similar to PDB:1T5E The structure of MexA (E_value = 9.6E_11);-42% similar to PDB:1VF7 Crystal structure of the membrane fusion protein, MexA of the multidrug transporter (E_value = 9.6E_11);","","","No significant hits to the Pfam 11.0 database","Tue Jan 7 13:58:54 2003","34539937","","","","","","1","","","PG0065" "PG0057","82439","82023","417","GTGAGAAAGAAGCTCTCCATATTCTTCATAGGCTTGGCCTCCCTTGTCGTGCTGATCATCGGTATTATGCCCCATCATCATCACAACAAAGGTATGGCATGTCTCATGGCAAAACATTGTCATGAGAACGCCCCTGCGGACAAAGAGCACACTCATAGCGAACCGACCTGCGTAGCCAAAACCTTCTACCTGTCCGGTGCGGAACTTCGACTCAAGCACAGATATTCTCTCTGCGAAGAGTGCCACGATCCCCATCACATCCATGTATTCCCTATTCTCTTTGCCGTAGCCGATCTATTGCTACACCCGACCGATGATCTTTCGGCCGATCCCGAATACGGAGAATATCTCGTCTTTTATACACCCTCCGAAGCAAGACCATCCCATGGCTTGCGAGCCCCTCCTTTCATCTTTTCC","7.10","0.36","15683","VRKKLSIFFIGLASLVVLIIGIMPHHHHNKGMACLMAKHCHENAPADKEHTHSEPTCVAKTFYLSGAELRLKHRYSLCEECHDPHHIHVFPILFAVADLLLHPTDDLSADPEYGEYLVFYTPSEARPSHGLRAPPFIFS","82439 82023","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm, Inner membrane","No significant hits in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-21]?signal-peptide
tmhmm\"[5-25]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Jan 19 09:26:02 MST 2001","Fri Jan 19 09:26:02 MST 2001","Fri Jan 19 09:26:02 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 13 14:55:19 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Feb 13 14:55:19 MST 2001","","","","","","","1","","","" "PG0058","84025","82514","1512","ATGATCGGGATATTCACTGGAGCACGCATCAAGGAGCTTGACCGCTACACGATAGAGCACGAGCCTGTCTCTTCGATCGATTTAGTCGAACGAGCAGCCGCCACATGGGTGTATGAATTCGAACGTCTCTACACCCAGCAGCGCCGGATCGTAGTCTTCGCCGGCCCTGGCAATAATGGAGCGGATGCCCTGTGTGCAGCCCGTATTCTGGGCGAAAACGGCTATTCGGTGGATGCCTTTCTCTTCAATGTCAGCGGATCGCTCAGCCCCGAATGCAACGAATGCAGGGTACGCCTGTTGGAGACTTCGGGGATCAGGCTGACCGAGGTGGTGGACAACTTCATTCCGCCGGAACTTTCCAGCCAGACCATAGTGGTGGACGGTCTTTTCGGCGTGGGACTGAATCGTCCTCTACAGGGCGGATTTGCCAAGGTCGTGGAGTTCCTCAACCAATCCGGAGCAGAGATCGTATCAATAGACATCCCTTCGGGGCTGTTCGAAGAGGATAACTTCGGCAATAATCCGAATGCCATCATCAGAGCCACACACACCCTTACGTTCGAATATCCCAAACTATCCTTCCTCTTCTCCGAAAACGCCGACTATGTAGGCAAGTGGAAAGTCCTGAATATCGGTCTGAGCGTCGAAGGAAAGCAAACGATCAAGACAGAGTATTTCCTCAATACCGATTTCGATATATCCGGCATCATCCGGCAACGCCCTCGTTTTGCGCACAAAGGAACGTTCGGCCATGCTCTGCTCATAGCGGGAAGTCGGGGCAAGATGGGAGCGGCTTGTCTGGCTGCAAAGGCTTGTCTCCGAAGCGGTATCGGTCTATTAACTACCCATATACCCGCCTGTGGCGAGGCTGTCATGCAGACCGCCGTGCCGGAGGCCATGGTACATGCCGATGAAAAGACGGATATAGTCTGCGACTATTCCTCTCCGCTGGTTTTTCAGGCTGTAGGTATCGGCCCCGGCATAGGACGGGCAGAAGGCACAGTCCTTTTGGTCGAAAAGATACTTTCCACTCCTAACGGCCCCTTGGTGCTTGATGCCGATGCCTTGAACATCATTGCAGAAAACCGCAGTTGGCTCGATCGTCTGCCTATCAACAGCATCCTCACACCTCACTCGCGAGAACTGGAACGGCTGACCACCCATTGCAATACGGACTATGAACGGCTGCGCCAAGCCCGATTCCTCGCCTGTCATCATCATGTCTATGTAGTCCTGAAAGGAGCATTCAGTGCAACCTGTATGCCCGGCGGCATGGTCGTATTCAACAATACGGGCAACCCCGGCATGGCGACAGGAGGAAGCGGCGATGTCCTCATGGGCATCATTACCGGCCTATTGGGGTCAGGCTATCTTCCTGCTTCAGCCTGTGTCCTCGGCAATTATATCCACGGTTTGGCCGGAGACATCTATGCCGGACGCTATAGTCAGGAGAGTCTGATAGCATCGGATATTATCGACAATCTGGGTACAGCGTTCAGACAAGTTCGCGAT","5.70","-9.60","54421","MIGIFTGARIKELDRYTIEHEPVSSIDLVERAAATWVYEFERLYTQQRRIVVFAGPGNNGADALCAARILGENGYSVDAFLFNVSGSLSPECNECRVRLLETSGIRLTEVVDNFIPPELSSQTIVVDGLFGVGLNRPLQGGFAKVVEFLNQSGAEIVSIDIPSGLFEEDNFGNNPNAIIRATHTLTFEYPKLSFLFSENADYVGKWKVLNIGLSVEGKQTIKTEYFLNTDFDISGIIRQRPRFAHKGTFGHALLIAGSRGKMGAACLAAKACLRSGIGLLTTHIPACGEAVMQTAVPEAMVHADEKTDIVCDYSSPLVFQAVGIGPGIGRAEGTVLLVEKILSTPNGPLVLDADALNIIAENRSWLDRLPINSILTPHSRELERLTTHCNTDYERLRQARFLACHHHVYVVLKGAFSATCMPGGMVVFNNTGNPGMATGGSGDVLMGIITGLLGSGYLPASACVLGNYIHGLAGDIYAGRYSQESLIASDIIDNLGTAFRQVRD","84052 82514","TIGR ID: PG0069","conserved hypothetical protein (possible sugar kinase)","Cytoplasm","Numerous hits in gapped BLAST to conserved hypothetical proteins, e.g. residues 4-502 are 31% similar to AE000736 of Aquifex aeolicus, residues 10-504 are 32% similar to the protein from Thermotoga maritima (AE001756).This sequence is similar to BT4383.","
InterPro
IPR000631
Domain
Carbohydrate kinase
PF01256\"[252-497]TCarb_kinase
TIGR00196\"[225-501]TyjeF_cterm
InterPro
IPR004443
Domain
YjeF-related protein, N-terminal
PF03853\"[21-193]TYjeF_N
TIGR00197\"[3-215]TyjeF_nterm
noIPR
unintegrated
unintegrated
G3DSA:3.40.1190.20\"[223-503]TG3DSA:3.40.1190.20
G3DSA:3.40.50.10260\"[4-210]TG3DSA:3.40.50.10260
PTHR12592\"[4-504]TPTHR12592
SSF53613\"[224-503]TSSF53613
SSF64153\"[2-251]TSSF64153


","BeTs to 12 clades of COG0063COG name: Predicted sugar kinaseFunctional Class: GThe phylogenetic pattern of COG0063 is amtkyqvcebr-uj-------Number of proteins in this genome belonging to this COG is 1","***** IPB000631 (Uncharacterized protein family UPF0031) with a combined E-value of 1.3e-09. IPB000631B 374-385 IPB000631C 439-449","Residues 4-211 are 31% similar to a (PROTEIN INTERGENIC REGION CONSERVED) protein domain (PD005835) which is seen in O67377_AQUAE.Residues 240-453 are 35% similar to a (PROTEIN INTERGENIC REGION CONSERVED) protein domain (PD005102) which is seen in YE33_SYNY3.","","Tue Jun 12 16:17:07 MDT 2001","","Tue Jun 12 16:20:33 MDT 2001","Tue Jun 12 16:20:33 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Tue Jun 12 16:20:33 MDT 2001","Tue Jun 12 16:20:33 MDT 2001","","","Mon Jan 5 14:32:36 2004","Mon Jan 5 14:32:36 2004","Tue Jun 12 16:17:07 MDT 2001","Mon Jan 5 14:32:36 2004","Mon Jan 5 14:32:36 2004","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Jun 12 16:17:07 MDT 2001","-49% similar to PDB:2AX3 Crystal structure of hypothetical protein (tm0922) from THERMOTOGA MARITIMA at 2.27 A resolution (E_value = 3.7E_58);-49% similar to PDB:1KYH Structural Genomics, Hypothetical protein in SIGY-CYDD intergenic region (E_value = 1.7E_26);","","","Residues 21 to 193 (E-value = 4.4e-31) place PG0058 in the YjeF_N family which is described as YjeF-related protein N-terminus (PF03853)Residues 252 to 497 (E-value = 8.5e-41) place PG0058 in the Carb_kinase family which is described as Carbohydrate kinase (PF01256)","Mon Jan 5 14:32:36 2004","34539940","","","","","","1","","","PG0069" "PG0059","84824","84033","792","ATGATGTCAGAGACAAAAATCAGTCCGTTGGCATGGGTGGATCCGCATGCCGAGATAGGAGTAGGTGTTGAGATAGGTCCATTTGCCGTCGTGGAAGCCGGAGCTAAGATTGGTGATGGTTCCATTTTGCATCCTCATGCTGTGGTTCGTTATGGATCGACGCTCGGTAAGGGTTGCGAAATCCATCCGAATGCAGTAATCGGAGGAGTACCGCAGGATCTGAAGTTCCAAGGTGAAGATACCACTGCTATCCTCGGCGATTATACCATCGTACGCGAATGTGCTACCGTCAATAGAGGCACCGCCTCTCGTGGCACTACCGTAGTGGGCAGTCATTGTCTGCTGATGGCTTATAGTCATATAGCCCATGACTGCGTATTGGGCGATCATATCATTGTCGGCAATGCTTCACAGATAGCCGGCGAAGTAGAAATAGACGACCATGCCATCATCAGCGGCGGAGTGTTGATACACCAGTTCGTACGCATCTCTCAGCATGTGATGATCCAAGGTGGCTCCCGCCTCTCGAAGGACATCCCTCCGTATGTACTGGTGGGACGGGATCCTCTCGTTTATTGCGGAATCAACATCGTAGGTCTGCGCCGCCGAAATTTCACCAACGAGCAGATTTTCCTGATCAATGATATTTACCGCACACTTTACCAAAGAGGACTGAATAATTCCGATGCGATCGATATTATCCAGCAGGAGTACGCCGATTGTCATGAGAAGGAACTTATATTAGACTTTATCAAGTCTTCCAAACGCGGCATTGTCCGCGGAACCATGGAG","6.20","-5.39","28649","MMSETKISPLAWVDPHAEIGVGVEIGPFAVVEAGAKIGDGSILHPHAVVRYGSTLGKGCEIHPNAVIGGVPQDLKFQGEDTTAILGDYTIVRECATVNRGTASRGTTVVGSHCLLMAYSHIAHDCVLGDHIIVGNASQIAGEVEIDDHAIISGGVLIHQFVRISQHVMIQGGSRLSKDIPPYVLVGRDPLVYCGINIVGLRRRNFTNEQIFLINDIYRTLYQRGLNNSDAIDIIQQEYADCHEKELILDFIKSSKRGIVRGTME","","In E.coli, LPXA is involved in the first stepof lipid A biosynthesis; lipid A is anendotoxin that anchors LPS to the outermembrane. An Xray crystallographic structureis known for this molecule.TIGR ID: PG0070","UDP-N-acetylglucosamine acyltransferase","Cytoplasm","Numerous hits in gapped BLAST to acyl carrier protiens, e.g. residues 6-260 are 60% similar to LPXA_AQUAE (AE000698).This sequence is similar to CT531 of Chlamydia trachomatis.","
InterPro
IPR001451
Repeat
Bacterial transferase hexapeptide repeat
PF00132\"[16-33]T\"[34-51]T\"[52-69]T\"[82-99]T\"[106-123]T\"[130-147]T\"[148-165]THexapep
InterPro
IPR010137
Family
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase
PIRSF000456\"[4-261]TUDP-GlcNAc_acltr
TIGR01852\"[7-259]Tlipid_A_lpxA
InterPro
IPR011004
Domain
Trimeric LpxA-like
SSF51161\"[5-260]TTrimer_LpxA_like
noIPR
unintegrated
unintegrated
G3DSA:2.160.10.10\"[4-195]TG3DSA:2.160.10.10


","BeTs to 6 clades of COG1043COG name: Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acyltransferaseFunctional Class: MThe phylogenetic pattern of COG1043 is -----q-ce--huj----inxNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 194-260 are 44% similar to a (ACYLTRANSFERASE TRANSFERASE) protein domain (PD007405) which is seen in LPXA_AQUAE.Residues 5-91 are 41% similar to a (ACYLTRANSFERASE TRANSFERASE) protein domain (PD004893) which is seen in Q9ZJL7_BBBBB.Residues 92-184 are 45% similar to a (TRANSFERASE ACYLTRANSFERASE PROTEIN REPEAT BIOSYNTHESIS) protein domain (PD000343) which is seen in LPXA_AQUAE.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","Wed Mar 28 15:32:25 MST 2001","Tue Jan 7 13:59:16 2003","Wed Mar 22 14:44:43 MST 2000","Fri Jan 19 09:37:52 MST 2001","Tue Jan 7 13:59:16 2003","","Thu Feb 22 18:27:48 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 7-179 are 25% similar to PG0061, a predicted UDP-3-O-(R-3-hydoxymyristoyl)-glucosamine-N-acyltransferase.","Wed Mar 28 15:32:25 MST 2001","Thu Feb 22 18:27:48 MST 2001","-58% similar to PDB:1LXA UDP N-ACETYLGLUCOSAMINE ACYLTRANSFERASE (E_value = 3.3E_48);-58% similar to PDB:2AQ9 Structure of E. coli LpxA with a bound peptide that is competitive with acyl-ACP (E_value = 3.3E_48);-57% similar to PDB:1J2Z Crystal structure of UDP-N-acetylglucosamine acyltransferase (E_value = 7.2E_43);-45% similar to PDB:2IU8 CHLAMYDIA TRACHOMATIS LPXD WITH 25MM UDPGLCNAC (COMPLEX I) (E_value = 4.1E_14);-45% similar to PDB:2IU9 CHLAMYDIA TRACHOMATIS LPXD WITH 100MM UDPGLCNAC (COMPLEX II) (E_value = 4.1E_14);","","","No significant hits to the Pfam 11.0 database","Wed Mar 28 15:32:25 MST 2001","34539941","","","","","","1","","","PG0070" "PG0060","86209","84824","1386","ATGCAAAAACAACAAACACTGAAAGATAAGTTCTGTCTGCAAGGCAAAGGCCTACACACCGGACTGGATATTCATATTACTTTCTGTCCTGCTCCGGAGGAATCCGGATATAAAATCAAGCGTGTCGATCTGGAGGGACAACCCGTTATAGACGCCATCGCAGACAATGTGCACAGTACTCGTCGCGGTACGGTGCTGAAAAAAGGCGAAGTTTCCGTCAGCACGATAGAACACGCCATGGCAGCTCTCTATGCCCTTGGCGTAGACAACTGCTTGATCGAGGTGGATGCACCCGAATTTCCCATCTTGGATGGTAGCGCGGAACCCTATGTGAGCGAAATCAAGCGCGTCGGCTTGGTGGAACAGGAAACACCACGCGATTATTATATAATAAAAAAACGCATGGAGGTGTCCGATCCGGAAAGCAATTCGAAGTTGATCCTGCTGCCGGATGACGAATTTACAGTAGATGTACACATCGCTTTCCCCAGCAAGGTGCTTAGCAATCAATTCGCTTCTTTGGAAACATTGTCGGATTTCGAAGAGCAGATTGCAGGTGCTCGCACCTTTGTTTTCGTACGGGAGGTGCAGATGCTTCTGGAGGCCAATCTGATCAAAGGCGGCGATTTGGACAATGCTTTGGTGATCTACGACGAGCCATTGGCACAAGATCGACTCGATGCCCTTAGTGATATGATGGGAGTGGAGCGGAAGCAGGTCAATGAATTGGGGTACATCAACAACAAGCCTCTAATCTACGACAATGAACCGGCACGCCACAAGCTCCTCGACGTATTGGGCGATCTGGCTTTGATCGGAAAATATATTCGCGGACGCATTATTGCCACCTGTCCGGGGCACAGCATCAACAACAAGATGGCGCGCCTGATTCGCAAAGAAATCAAACAGAACGAAGCACAGGCCCCTGTCTACAATCCGAACAAAGAGCCGATCATGGACATCAATCGGATCAAAGAGCTTCTACCCCACCGCTATCCGTTCCTATTGGTCGATAAGATCATCGAAGTAGGGCCGGACTATATAGTCGGAGTAAAGAGCGTTTCCGGCAACGAACCATTTTTCCCCGGTCACTTCCCTGGTGAGCCTGTGATGCCGGGAGTCCTGCAAGTAGAGGCAATGGCGCAGGTGGGAGGGCTCTTGGTACTCAATACCCTGACCGAGCCTTCGAGCTACTCCACATACTTCCTTATGATCGACAAAGTGAAATTCCGCCGTAAAGTGGTACCCGGCGACACTTTGGTGTTCAAGCTCAGAATGATTTCCGAGATACGCAGAGGAGTCGCTAATATGCGCGGCTTAGCTTTCGTAGGAGAGCAGTTAGCCTGTGAAGCTGAATTTATGGCACAGATAATCCAGAATAAAGAA","5.40","-10.02","51680","MQKQQTLKDKFCLQGKGLHTGLDIHITFCPAPEESGYKIKRVDLEGQPVIDAIADNVHSTRRGTVLKKGEVSVSTIEHAMAALYALGVDNCLIEVDAPEFPILDGSAEPYVSEIKRVGLVEQETPRDYYIIKKRMEVSDPESNSKLILLPDDEFTVDVHIAFPSKVLSNQFASLETLSDFEEQIAGARTFVFVREVQMLLEANLIKGGDLDNALVIYDEPLAQDRLDALSDMMGVERKQVNELGYINNKPLIYDNEPARHKLLDVLGDLALIGKYIRGRIIATCPGHSINNKMARLIRKEIKQNEAQAPVYNPNKEPIMDINRIKELLPHRYPFLLVDKIIEVGPDYIVGVKSVSGNEPFFPGHFPGEPVMPGVLQVEAMAQVGGLLVLNTLTEPSSYSTYFLMIDKVKFRRKVVPGDTLVFKLRMISEIRRGVANMRGLAFVGEQLACEAEFMAQIIQNKE","(3R)-hydroxymyristoyl-acp-dehydratase","Results of gapped BLAST showed similarity to the first 300 amino acids or to the last 140 amino acids. There was no complete match to the whole protein sequence. This may be a fused protein in comparison with other genomes, or a stop/start codon may have been missed.In E.coli, the (3R)-hydroxymyristoyl-ACPdehydratase is involved in lipid Abiosynthesis. See Mohan et al., J.Biol.Chem.269:32896 (1994).TIGR ID: PG0071","UDP-3-O-acyl-GlcNAc deacetylase/(3R)-hydroxymyristoyl-acp-dehydratase","Cytoplasm","Numerous hits in gapped BLAST to UDP-3-O-acyl-N-acetylglucosamine deacetylase sequences (N-terminal) and to beta-hydroxyacyl-ACP dehydratases (C-terminal, see comments), e.g. residues 1-297 are 36% similar to the enzyme from Pseudomonas aeruginosa (U67855), residues 1-297 are 32% similar to (AE003920) of Xylella fastidiosa. Residues 319-454 are 52% similar to (AC007168) putative beta-hydroxyacyl-ACP dehydratase of Arabidopsis thaliana.This sequence is similar to CT532, CT533 and BT4206.","
InterPro
IPR004463
Family
UDP-3-0-acyl N-acetylglucosamine deacetylase
PD011499\"[3-132]TLipid_A_LpxC
PF03331\"[1-302]TLpxC
TIGR00325\"[1-328]TlpxC
InterPro
IPR010084
Domain
Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ
TIGR01750\"[319-457]TfabZ
InterPro
IPR013114
Domain
Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ
PF07977\"[328-452]TFabA
noIPR
unintegrated
unintegrated
G3DSA:3.10.129.10\"[320-462]TG3DSA:3.10.129.10
G3DSA:3.30.1700.10\"[128-305]TG3DSA:3.30.1700.10
G3DSA:3.30.230.20\"[2-126]TG3DSA:3.30.230.20
SSF54211\"[2-125]T\"[135-316]TSSF54211
SSF54637\"[318-462]TSSF54637


","BeTs to 6 clades of COG0774COG name: UDP-3-0-acyl-N-acetylglucosamine deacetylaseFunctional Class: MThe phylogenetic pattern of COG0774 is -----q-ce--huj----inxNumber of proteins in this genome belonging to this COG is 1","***** PF01377 (Thioester dehydrase) with a combined E-value of 9.3e-43. PF01377A 329-340 PF01377B 348-387 PF01377C 404-446","Residues 6-297 are 35% similar to a (DEACETYLASE UDP-3-O-3-HYDROXYMYRISTOYL) protein domain (PD011499) which is seen in P97050_PSEAE.Residues 318-443 are 40% similar to a (PROTEIN DEHYDRATASE CARRIER) protein domain (PD005671) which is seen in O97376_TOXGO.","","Tue Jun 12 16:22:50 MDT 2001","","Tue Jun 12 16:22:50 MDT 2001","Tue Jun 12 16:22:50 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Tue Jun 12 16:22:50 MDT 2001","Tue Jun 12 16:22:50 MDT 2001","Wed Mar 22 14:48:06 MST 2000","Tue Jan 7 14:21:19 2003","Wed Mar 22 14:51:13 MST 2000","Mon Jan 5 11:09:44 2004","Tue Jan 7 14:21:19 2003","Tue Jan 7 14:21:19 2003","Tue Jan 7 14:21:19 2003","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Apr 19 16:34:18 MDT 2001","-49% similar to PDB:2IER Crystal Structure of Aquifex aeolicus LpxC Complexed with Uridine 5'-Diphosphate (E_value = 1.4E_27);-49% similar to PDB:2IES Crystal Structure of Aquifex aeolicus LpxC Complexed with Pyrophosphate (E_value = 1.4E_27);-49% similar to PDB:2J65 STRUCTURE OF LPXC FROM AQUIFEX AEOLICUS IN COMPLEX WITH UDP (E_value = 1.4E_27);-49% similar to PDB:2O3Z X-ray crystal structure of LpxC complexed with 3-heptyloxybenzoate (E_value = 1.4E_27);-49% similar to PDB:1P42 Crystal structure of Aquifex aeolicus LpxC Deacetylase (Zinc-Inhibited Form) (E_value = 1.8E_27);","","","Residues 1 to 302 (E-value = 1.1e-63) place PG0060 in the LpxC family which is described as UDP-3-O-acyl N-acetylglycosamine deacetylase (PF03331)Residues 362 to 451 (E-value = 3.7e-16) place PG0060 in the 4HBT family which is described as Thioesterase superfamily (PF03061)","Mon Jan 5 11:09:44 2004","34539942","","","","","","1","","","PG0071" "PG0061","87237","86191","1047","ATGGAATTTACAGCCCAACAGATAGCTGACTACCTCCACGGTTCTGTGGAGGGCAATCCCAAGGTGCGACTGCACGACTTTGCCAAGATAGAGGAAGGTCGTAGTGGCTGTCTCTCGTTTTTAGCCAATGCTAAGTACGAACACTATTTGTACCAAACACAATCCGATGCAGTACTCGTCAATCAGGACTTCGAACCGCGCGAATCGGTGAAGACGACCCTGATACGAGTTCCCAATGCCTATACAGCATTGGCGCAACTAATGCAGTTGGTGGACAGCATGAAGCCCCAAAGGAAGGGAGTCGATTCCACGGCTTTCGTTCATCCATCGGTGATACTGCCGGATGATTGCTATGTAGGAGCTTTTGCCTACGTGTCGGAAGGGGCATCGCTGGGTACAGGCTGTAGCTTGTATCCGCATGTTTATGTAGGTAGCGGTGTGTCTGTTGGAGAGGGGACGATCCTCTACCCCCATGTGACGGTCTATGATGGCTGTTCCATCGGTTCGCGTTGCGTGATTCATTCGGGAGCCGTTATCGGAGCGGATGGATTCGGTTTTGCTCCGAATGCCGAAGGCTACAGCAAGATTCCGCAACTGGGGAACGTTATCATTGAAGATGATGTCGAAATCGGTGCCAACACTTGTATCGACAGGGCTGTTATGGATTCAACGATCATACATCGCGGAGTAAAGCTAGACAACCTTGTACAGATTGCTCACAACTGTTCTGTCGGAAGTCACACGGTTTTTGCTGCCCAAGTCGGCATGGCCGGTTCGTCCCATGTGGGCGAATGGTGCCAGTTCGGAGGGCAGGTGGGTTTGTCCGGGCACATCAAAGTGGGAGACAGGGTCAGTTTAGGAGGACAGACCGGCTTGTTGAGCAACGTCAAATCCGGTTCCACGCTTCTCGGTTCGCCCGGGATGCCGCTACGGGATATGCTGCGAGCATCGGTCATCTTTCCCAAACTCCCGGATATGAGCCTTCGCATCGAACAGCTGGAAAAAGAAATATCAGAACTAAAAGAAATATGCAAAAACAACAAACAC","6.20","-6.29","37390","MEFTAQQIADYLHGSVEGNPKVRLHDFAKIEEGRSGCLSFLANAKYEHYLYQTQSDAVLVNQDFEPRESVKTTLIRVPNAYTALAQLMQLVDSMKPQRKGVDSTAFVHPSVILPDDCYVGAFAYVSEGASLGTGCSLYPHVYVGSGVSVGEGTILYPHVTVYDGCSIGSRCVIHSGAVIGADGFGFAPNAEGYSKIPQLGNVIIEDDVEIGANTCIDRAVMDSTIIHRGVKLDNLVQIAHNCSVGSHTVFAAQVGMAGSSHVGEWCQFGGQVGLSGHIKVGDRVSLGGQTGLLSNVKSGSTLLGSPGMPLRDMLRASVIFPKLPDMSLRIEQLEKEISELKEICKNNKH","87237 86191 [Shorter 81 406 99]","TIGR ID: PG0072","UDP-3-O-(R-3-hydoxymyristoyl)-glucosamine-N-acyltransferase","Cytoplasm","Numerous hits in gapped BLAST to UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferases, e.g. residues 3-342 are 54% similar to the enzyme from N.meningiditis (AL162752).This sequence is orthologous to CT243 and BT4207.","
InterPro
IPR001451
Repeat
Bacterial transferase hexapeptide repeat
PF00132\"[110-127]T\"[128-145]T\"[146-163]T\"[164-181]T\"[201-218]T\"[223-240]T\"[241-258]T\"[259-276]T\"[277-294]THexapep
InterPro
IPR007691
Family
UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD
PF04613\"[20-91]TLpxD
TIGR01853\"[7-330]Tlipid_A_lpxD
InterPro
IPR011004
Domain
Trimeric LpxA-like
SSF51161\"[39-292]TTrimer_LpxA_like
noIPR
unintegrated
unintegrated
G3DSA:2.160.10.10\"[116-312]TG3DSA:2.160.10.10


","BeTs to 6 clades of COG1044COG name: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferaseFunctional Class: MThe phylogenetic pattern of COG1044 is -----q-ce--huj----inxNumber of proteins in this genome belonging to this COG is 1","***** IPB001451 (Bacterial transferase hexapeptide repeat) with a combined E-value of 8.3e-07. IPB001451A 161-180 IPB001451B 210-220","Residues 183-218 are 66% similar to a (ACYLTRANSFERASE TRANSFERASE) protein domain (PD088500) which is seen in Q44630_BRUAB.Residues 200-309 are 47% similar to a (TRANSFERASE ACYLTRANSFERASE PROTEIN REPEAT BIOSYNTHESIS) protein domain (PD000343) which is seen in Q9Z8N6_BBBBB.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Mar 22 11:19:47 MST 2000","Mon Jan 5 11:11:06 2004","Tue Jan 2 16:28:07 MST 2001","Thu Feb 15 11:41:34 MST 2001","Thu Feb 15 11:41:34 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 119-296 share 25% identity with PG0059, UDP-N-acetylglucosamine acyltransferase.","Mon Apr 2 16:09:11 MDT 2001","Thu Feb 15 11:41:34 MST 2001","-55% similar to PDB:2IU8 CHLAMYDIA TRACHOMATIS LPXD WITH 25MM UDPGLCNAC (COMPLEX I) (E_value = 1.7E_53);-55% similar to PDB:2IU9 CHLAMYDIA TRACHOMATIS LPXD WITH 100MM UDPGLCNAC (COMPLEX II) (E_value = 1.7E_53);-55% similar to PDB:2IUA C. TRACHOMATIS LPXD (E_value = 1.7E_53);-42% similar to PDB:1LXA UDP N-ACETYLGLUCOSAMINE ACYLTRANSFERASE (E_value = 2.1E_11);-42% similar to PDB:2AQ9 Structure of E. coli LpxA with a bound peptide that is competitive with acyl-ACP (E_value = 2.1E_11);","","","Residues 3 to 103 (E-value = 5.8e-07) place PG0061 in the LpxD family which is described as UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD (PF04613)","Mon Apr 2 16:09:11 MDT 2001","34539943","","","","","","1","","","PG0072" "PG0062","88160","87333","828","ATGACAACGAAAGAACTTTTTGACCGGATTTGCCGGAAACGCTCGTTTCTCTGTGTCGGGTTGGATACCGATGTGAAGAAAATACCGCCGCATTTACTGAATGAAGATGATCCTATTTTGGCTTTCAACAAAGCCATCATCGATGCTACGGCAGAATACTGTGTGGCTTTCAAGCCCAACATGGCTTTCTATGAGAGCATGGGGAGCTTCGGAGCTCACTCTTTTGAAAAAACGATCGAATACATTCGAGAGCGATACCCCGATCAATTTATCATAGCCGATGCCAAGCGTGGAGATATCGGCAATACGAGTGATATGTATGCCCGTTCGTTCTTCGAGCATCTCAAGGTGGATGCCCTCACCGTTTCTCCTTATATGGGAGAGGACAGCATCAGCCCTTTCCTGAGTTATGCAGGCAAGTTCACGGTGCTTCTGGCACTGACCTCGAACAAAGGTTCGCAAGACTTTCAAATGATGCGCGATGCCGATGGAGAATACCTTTTCGAACGCGTTATTCGTATCAGCCAGACGTGGGATAATGCCGGTCAACTGATGTATGTGGTGGGGGCTACGCAGGCCTCCATGCTGAAAGATATTCGCGAGATCGTGCCGGACGCTTTCTTGCTTGTCCCCGGCGTAGGTGCTCAGGGTGGAAGTCTGGAAGATGTGGCCGAGTACGGCATGAATGCTCATTGCGGTCTGCTCGTCAATGCTTCGCGCAGTATCATCTATGCGGATAATACGGAGGGGTTTGCTGCTAAAGCTGCCGGAGAAGCAGCCGCCATGCAGCGTCAGATGGAAATTGCTCTTCGGGCAAAAGCCCTGATC","4.90","-8.21","30558","MTTKELFDRICRKRSFLCVGLDTDVKKIPPHLLNEDDPILAFNKAIIDATAEYCVAFKPNMAFYESMGSFGAHSFEKTIEYIRERYPDQFIIADAKRGDIGNTSDMYARSFFEHLKVDALTVSPYMGEDSISPFLSYAGKFTVLLALTSNKGSQDFQMMRDADGEYLFERVIRISQTWDNAGQLMYVVGATQASMLKDIREIVPDAFLLVPGVGAQGGSLEDVAEYGMNAHCGLLVNASRSIIYADNTEGFAAKAAGEAAAMQRQMEIALRAKALI","88160 87333","TIGR ID: PG0073","orotidine 5' phosphate decarboxylase","Cytoplasm","Several hits in gapped BLAST to orotidine 5' phosphate decarboxlase proteins, e.g. residues 13-245 are 56% similar to the enzyme from Leishmania mexicana (AB029444).This sequence is similar to BT4209.","
InterPro
IPR001754
Domain
Orotidine 5'-phosphate decarboxylase, core
PF00215\"[15-255]TOMPdecase
InterPro
IPR011060
Domain
Ribulose-phosphate binding barrel
SSF51366\"[25-270]TRibP_bind_barrel
InterPro
IPR011995
Domain
Orotidine 5'-phosphate decarboxylase, subfamily 2, core
TIGR02127\"[3-256]TpyrF_sub2
InterPro
IPR013785
Domain
Aldolase-type TIM barrel
G3DSA:3.20.20.70\"[45-259]TAldolase_TIM


","BeTs to 4 clades of COG0284COG name: Orotidine-5'-phosphate decarboxylaseFunctional Class: FThe phylogenetic pattern of COG0284 is amtkyqvceb-huj-------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 13-99 are 35% similar to a (OMPDCASE-OPRTASE) protein domain (PD204977) which is seen in O76139_TRYCR.Residues 13-245 are 34% similar to a (DECARBOXYLASE OMP PYRIMIDINE BIOSYNTHESIS) protein domain (PD017607) which is seen in DCOP_MYCTU.Residues 100-245 are 45% similar to a (DECARBOXYLASE OROTIDINE PYRIMIDINE BIOSYNTHESIS) protein domain (PD001042) which is seen in O76139_TRYCR.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Mon Jan 5 11:12:59 2004","Mon Jan 5 11:12:59 2004","Mon Jan 5 11:12:59 2004","","Mon Apr 23 17:34:56 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Apr 23 17:34:56 2001","-47% similar to PDB:2GUU crystal structure of Plasmodium vivax orotidine 5-monophosphate decarboxylase with 6-aza-UMP bound (E_value = 3.2E_20);-47% similar to PDB:2FFC Crystal Structure of Plasmodium Vivax Orotidine-Monophosphate-Decarboxyl UMP Bound (E_value = 4.1E_20);-48% similar to PDB:2AQW Structure of putative orotidine-monophosphate-decarboxylase from Plasmodium yoelii (PY01515) (E_value = 6.0E_19);-47% similar to PDB:2FDS Crystal Structure of Plasmodium Berghei Orotidine 5'-monophosphate Decarboxylase (ortholog of Plasmodium falciparum PF10_0225) (E_value = 6.0E_19);-47% similar to PDB:2F84 Crystal Structure of an orotidine-5'-monophosphate decarboxylase homolog from P.falciparum (E_value = 3.3E_17);","","","Residues 15 to 255 (E-value = 1.4e-36) place PG0062 in the OMPdecase family which is described as Orotidine 5'-phosphate decarboxylase / HUMPS family (PF00215)","Mon Jan 5 11:12:59 2004","34539944","","","","","","1","","","PG0073" "PG0063","89262","88180","1083","ATGTCAGAGAATAACCTATTAGACCGATTGGATGGCTTGGAGAGCCGTTTCGAAGAGATTTCCACGCTTATCACGGATCCGGCCGTAATCGCGGACATGAAGCGTTTCACGAAGTTGAGCAAGGAGTATCGCGATCTGGAAAAGATCCATACGGCCGGGCGCGACTATCGCAATCTGCTCGCCAACATCGAGGAAGCAAAGCATACCATGGCCAAAGAGAGCGACGAGGAGTTGCGCGAGATGGCTCGCGAGATGCTGGCCGAGGCTAACGAACGCTTGCCCATTTTGGAGGAGGAGATCAAGATGCTACTCATTCCGGCCAATCCGGAGGATGACAAGAATGCCATCGTGGAAATTCGCGGAGGAACGGGGGGCGATGAGGCTGCACTTTTTGCCGGCGACCTCTACCGCATGTACGTCAAGTATTGCGAGAGCAAAGGCTGGCAGGTGGAGGTCACCGACCTGAGCGAAGGAGCTACGGGTGGTTACAAAGAGATCGTCTTCTCGGTCAAGGGGGAAGGAGTGTATGGTATCCTGAAATATGAGAGCGGTGTGCACCGTGTCCAGCGCGTACCTGCGACCGAGACACAGGGGCGCATACATACCTCGGCAGCTACCGTGGCTGTCTTGCCCGAAGCCGAAGAAGTGGACGTGGAGATCAATCCGGCAGACATCGAGATGCAGACGTCCCGTTCAGGCGGTGCCGGAGGTCAGAATGTAAACAAGGTGGAGACTAAGGTGCAGCTTACGCACAAGCCTACGGGTATGGTGGTGGTTTGCCAGCAGGCTCGTTCGCAGATTGCCAACCGCGAACTGGCTATGCAAATGCTGCGCTCCAAGCTCTACGACATAGAGCTGTCCAAGCATAACGAAGCTATTGCAGCCCGACGCAAGACGATGGTATCGACCGGCGACCGTTCGGCCAAGATTCGTACCTACAACTATCCGCAAGGACGGGTGACGGATCACCGCATCAATATGACGGTCTACAACCTGTCGGCCGTAATGGACGGTGAGGTACAGCCTTTTATCGATGCCTTGATAATAGCAGAAAATGTTGAGCGGATGAAAGAAGCCGCCTTA","5.00","-12.36","40356","MSENNLLDRLDGLESRFEEISTLITDPAVIADMKRFTKLSKEYRDLEKIHTAGRDYRNLLANIEEAKHTMAKESDEELREMAREMLAEANERLPILEEEIKMLLIPANPEDDKNAIVEIRGGTGGDEAALFAGDLYRMYVKYCESKGWQVEVTDLSEGATGGYKEIVFSVKGEGVYGILKYESGVHRVQRVPATETQGRIHTSAATVAVLPEAEEVDVEINPADIEMQTSRSGGAGGQNVNKVETKVQLTHKPTGMVVVCQQARSQIANRELAMQMLRSKLYDIELSKHNEAIAARRKTMVSTGDRSAKIRTYNYPQGRVTDHRINMTVYNLSAVMDGEVQPFIDALIIAENVERMKEAAL","89262 88180","TIGR ID: PG0074","peptide chain release factor","Cytoplasm","Numerous hits in gapped BLAST to peptide chain release sequences, e.g. residues 5-348 are 72% similar to RF1_PSEAE (AE004880). This sequence is similar to CT023 and BT4210.","
InterPro
IPR000352
Domain
Class I peptide chain release factor
PF00472\"[211-324]TRF-1
PS00745\"[231-247]TRF_PROK_I
InterPro
IPR004373
Family
Peptide chain release factor 1
PTHR11075:SF9\"[1-361]TPrfA
TIGR00019\"[1-360]TprfA
InterPro
IPR005139
Domain
PCRF
PF03462\"[69-182]TPCRF
InterPro
IPR012086
Family
Protein chain release factor, RF-1/RF-2
PIRSF003056\"[6-361]TRelease_factor
noIPR
unintegrated
unintegrated
PIRSF500105\"[6-361]TPrfA
PTHR11075\"[1-361]TPTHR11075
SSF75620\"[29-360]TSSF75620


","BeTs to 13 clades of COG0216COG name: Protein chain release factor AFunctional Class: JThe phylogenetic pattern of COG0216 is ----YqvcEbrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB000352 (Class I peptide chain release factor) with a combined E-value of 2.8e-109. IPB000352A 117-152 IPB000352B 162-212 IPB000352C 224-270 IPB000352D 297-324 IPB000352D 310-337","Residues 248-350 are 56% similar to a (PEPTIDE CHAIN FACTOR RELEASE) protein domain (PD002191) which is seen in RF1_TREPA.Residues 98-152 are 65% similar to a (PEPTIDE CHAIN FACTOR RELEASE) protein domain (PD088320) which is seen in RF1_BACSU.Residues 6-96 are 31% similar to a (PEPTIDE CHAIN FACTOR RELEASE) protein domain (PD004306) which is seen in RF1_BACSU.Residues 161-247 are 67% similar to a (PEPTIDE CHAIN FACTOR RELEASE) protein domain (PD002273) which is seen in RF1_SYNY3.Residues 202-307 are 35% similar to a (CHROMOSOME XII COSMID 8003) protein domain (PD092301) which is seen in Q05863_YEAST.Residues 1-97 are 31% similar to a (PROTEIN COILED COIL REPEAT FILAMENT HEPTAD PATTERN) protein domain (PD000002) which is seen in RF1_AQUAE.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Mar 21 16:22:19 MST 2000","Mon Jan 5 11:14:18 2004","Mon Apr 2 16:12:01 MDT 2001","Mon Apr 2 16:12:01 MDT 2001","Mon Apr 2 16:12:01 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 84-349 share 39% identity with PG1027, a peptide chain release factor.","Mon Apr 2 16:12:01 MDT 2001","Mon Apr 2 16:12:01 MDT 2001","-72% similar to PDB:2B3T Molecular basis for bacterial class 1 release factor methylation by PrmC (E_value = 1.2E_97);-68% similar to PDB:1ZBT Crystal structure of Peptide chain release factor 1 (RF-1) (SMU.1085) from Streptococcus mutans at 2.34 A resolution (E_value = 4.7E_94);-67% similar to PDB:2B64 30S ribosomal subunit, tRNAs, mRNA and release factor RF1 from a crystal structure of the whole ribosomal complex. This file contains the 30S subunit, tRNAs, mRNA and release factor RF1 from a crystal structure of the whole ribosomal complex\". The entire crystal structure contains one 70S ribosome, tRNAs, mRNA and release factor RF1 and is described in remark 400. (E_value = 8.3E_91);-65% similar to PDB:1RQ0 Crystal structure of peptide releasing factor 1 (E_value = 1.9E_82);-65% similar to PDB:2FVO Docking of the modified RF1 X-ray structure into the Low Resolution Cryo-EM map of E.coli 70S Ribosome bound with RF1 (E_value = 1.9E_82);","","","Residues 69 to 182 (E-value = 2.5e-59) place PG0063 in the PCRF family which is described as PCRF domain (PF03462)Residues 213 to 324 (E-value = 4.8e-62) place PG0063 in the RF-1 family which is described as Peptidyl-tRNA hydrolase domain (PF00472)","Mon Jan 5 11:14:18 2004","34539945","","","","","","1","","","PG0074" "PG0064","90528","89290","1239","ATGGCGAATATATACCCCAAGAGGGCGATATACTGCGCTTGCGCTAAAACAAGAAAACAAAGACGAAGCAGCTATATGTCTAACGAACGCTATAACCTGCGCGGAGTGTCGGCCTCGAAAGAGGATGTGCATGCCGCCATCAAGAATGTGGACAAGGGTATTTTCCCTCAGGCATTCTGCAAGATTATTCCGGATATTCTCGGGGGCGATCCTGACTATTGCAATATCATGCATGCCGACGGGGCCGGCACCAAAAGCTCGCTTGCATACGTTTACTGGCGCGAGACGGGAGACCTCTCCGTATGGAAAGGAATTGCACAGGATGCGCTGATCATGAATATAGACGATCTGCTGTGCGTCGGTGCCGTGGATAATATACTTGTGTCCTCGACCATCGGCCGGAACAAACGGCTGATACCGGGCGAAGTGGTATCGGCTATTATCAACGGCACGGAAGAACTCCTGGCCGATCTGCGTCGCATGGGTGTGAATGCCTATGCCACGGGGGGTGAAACGGCTGATGTGGGCGATCTCGTCAGGACTATCATCGTGGACAGTACGGTGACTTGCCGGATGAAGCGATCGGATGTGATAGACAATGCCCGTATCAAGGCCGGCGACGTTATCGTCGGGTTAGCCTCATTCGGACAAGCTTCCTACGAGGAACAGTACAACGGCGGTATGGGGAGCAACGGACTGACCTCTGCTCGCCACGACGTTTTTGCCCACTATCTGGCAGAGAAGTATCCGGAGAGTTTCGATCCCTCGGTGCCGGACGATTTGGTCTATAGCGGCAGCATGAAGCTGACCGATGCCATAGCCGGATTGGGGCTGGACGCAGGCAAGCTCGTGCTCTCGCCCACACGTACCTACGCCCCTGTGGTCAAGGCCATACTGGACGAAATGAGTCGTCGCATTCATGGCATGGTACACTGCTCCGGCGGTGCGCAGACCAAGGTGATGCACTTCGTCAAGAATAAGCGCGTGGTCAAGGACAACTTCTTCCCGACACCTCCTCTCTTTGAGCTGATACAGCGCGAAAGCCTAACTGAGTGGTCGGAGATGTACAAGGTCTTCAACATGGGACATCGTCTCGAAGTGTATCTGTCCGAAGAGAATGCCTCGCACGTGATCGAAATATCCGAGAGCTTCGGTATTCCGGCGCGCATCGTCGGTCGTGTGGAAGAAGCTCCGACCAACGAATTGATCCTCCAAACGCCCTATGGCGAGATCCGATAC","6.40","-3.14","45467","MANIYPKRAIYCACAKTRKQRRSSYMSNERYNLRGVSASKEDVHAAIKNVDKGIFPQAFCKIIPDILGGDPDYCNIMHADGAGTKSSLAYVYWRETGDLSVWKGIAQDALIMNIDDLLCVGAVDNILVSSTIGRNKRLIPGEVVSAIINGTEELLADLRRMGVNAYATGGETADVGDLVRTIIVDSTVTCRMKRSDVIDNARIKAGDVIVGLASFGQASYEEQYNGGMGSNGLTSARHDVFAHYLAEKYPESFDPSVPDDLVYSGSMKLTDAIAGLGLDAGKLVLSPTRTYAPVVKAILDEMSRRIHGMVHCSGGAQTKVMHFVKNKRVVKDNFFPTPPLFELIQRESLTEWSEMYKVFNMGHRLEVYLSEENASHVIEISESFGIPARIVGRVEEAPTNELILQTPYGEIRY","90528 89290","TIGR ID: PG0075","phosphoribosyl-aminoimidazole synthetase (AIRS)","Cytoplasm","Several hits in gapped BLAST to phosphoribosylaminoimidazole synthetase sequences, e.g. residues 72-397 are 44% similar to the enzyme from Methanococcus jannaschii (U67476).This sequence is similar to BT4211.","
InterPro
IPR010918
Domain
AIR synthase related protein, C-terminal
PF02769\"[256-405]TAIRS_C
noIPR
unintegrated
unintegrated
G3DSA:3.90.650.10\"[199-406]TG3DSA:3.90.650.10
PTHR10520\"[30-245]T\"[271-405]TPTHR10520
PTHR10520:SF4\"[30-245]T\"[271-405]TPTHR10520:SF4
SSF55326\"[29-198]TSSF55326
SSF56042\"[199-406]TSSF56042


","BeTs to 11 clades of COG0150COG name: Phosphoribosylaminoimidazol (AIR) synthetase PurMFunctional Class: FThe phylogenetic pattern of COG0150 is amtkyqvcebrh---------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 277-397 are 31% similar to a (LIGASE SYNTHETASE PURINE PROTEIN) protein domain (PD002449) which is seen in PUR5_METJA.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Jan 19 12:44:19 MST 2001","Mon Jan 5 11:15:53 2004","Fri Apr 20 12:22:33 MDT 2001","","Fri Apr 20 12:22:33 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Apr 20 12:22:33 MDT 2001","-44% similar to PDB:2BTU CRYSTAL STRUCTURE OF PHOSPHORIBOSYLFORMYLGLYCINAMIDINE CYCLO-LIGASE FROM BACILLUS ANTHRACIS AT 2.3A RESOLUTION. (E_value = 1.2E_14);","","","No significant hits to the Pfam 11.0 database","Fri Apr 20 12:22:33 MDT 2001","34539946","","","","","","1","","","PG0075" "PG0065","91423","90485","939","ATGAGAGCAAACATTTGGCAGATACTTTCCGTTTCGGTTCTCTTTTTCTTCGGGACAGCGATCGGACAGGCTCAGAGTCGAAACCGTACATACGAGGCTTATGTGAAACAGTACGCCGACGAAGCTATCCGACAGATGAGCCGCTACAATATACCGGCAAGCATCACCATAGCACAGGCTTTGGTGGAGACAGGAGCCGGAGCCAGTACACTGGCCAGCGTACACAACAATCACTTCGGGATCAAATGCCACAAATCGTGGACGGGCAAGCGCACCTATCGTACCGACGATGCGCCGAACGAATGCTTCCGCAGCTATTCGGCCGCTCGCGAATCGTATGAAGATCATTCCCGATTTCTGCTCCAACCACGCTATCGTCCCCTGTTCAAACTCGACAGAGAAGACTATCGGGGCTGGGCTACGGGGTTGCAACGCTGTGGCTATGCCACCAATCGGGGCTATGCCAATCTGCTGATCAAGATGGTGGAGCTGTATGAGCTATATGCTTTGGATCGCGAGAAGTACCCCTCATGGTTCCACAAGTCTTACCCCGGGTCCAACAAAAAATCCCATCAAACGACCAAGCAGAAGCAGAGCGGACTCAAGCACGAAGCTTACTTCAGCTACGGACTGCTCTACATCATAGCCAAGCAAGGCGATACCTTCGATTCTTTGGCCGAAGAGTTCGACATGAGAGCCTCCAAACTGGCCAAATACAACGATGCTCCCGTGGATTTCCCGATCGAAAAGGGCGATGTGATCTATCTGGAGAAAAAGCACGCATGCTCCATCTCCAAACACACACAGCACGTAGTGCGTGTGGGCGATTCGATGCACAGTATCTCCCAACGCTATGGCATCCGGATGAAGAACCTCTACAAGCTCAACGACAAGGATGGCGAATATATACCCCAAGAGGGCGATATACTGCGCTTGCGC","10.10","14.46","36201","MRANIWQILSVSVLFFFGTAIGQAQSRNRTYEAYVKQYADEAIRQMSRYNIPASITIAQALVETGAGASTLASVHNNHFGIKCHKSWTGKRTYRTDDAPNECFRSYSAARESYEDHSRFLLQPRYRPLFKLDREDYRGWATGLQRCGYATNRGYANLLIKMVELYELYALDREKYPSWFHKSYPGSNKKSHQTTKQKQSGLKHEAYFSYGLLYIIAKQGDTFDSLAEEFDMRASKLAKYNDAPVDFPIEKGDVIYLEKKHACSISKHTQHVVRVGDSMHSISQRYGIRMKNLYKLNDKDGEYIPQEGDILRLR","91450 90485","TIGR ID: PG0076","conserved hypothetical protein","Periplasm, Outer membrane, Extracellular","One strong hit in gapped BLAST to hemagglutinin and some weak hits to conserved hypothetical proteins and possible flagellar proteins. Residues 8-298 are 44% similar to a hemagglutinin from Prevotella intermedia (AF017417). Residues 32-171 are 32% similar to the N-acetylmuramoyl-L-alanine amidase homolog yubE from Bacillus subtilis (Z99119). Residues 35-166 are 34% similar to the polar FlgJ flagellar homolog from Vibrio parahaemolyticus (U12817).","
InterPro
IPR002482
Domain
Peptidoglycan-binding LysM
PF01476\"[214-257]T\"[270-313]TLysM
SM00257\"[213-257]T\"[269-313]TLysM
InterPro
IPR002901
Domain
Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase
PF01832\"[38-167]TGlucosaminidase
noIPR
unintegrated
unintegrated
SSF54106\"[210-259]T\"[266-312]TSSF54106


","BeTs to 3 clades of COG1705COG name: Flagellar biosynthesis protein FlgJ, probable N-acetylmuramidaseFunctional Class: NThe phylogenetic pattern of COG1705 is ------v-eb-----------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 213-298 are 42% similar to a (HEMAGGLUTININ) protein domain (PD113116) which is seen in O30793_PREIN.Residues 48-171 are 60% similar to a (PROTEIN PRECURSOR FLAGELLAR FLAGELLA) protein domain (PD007611) which is seen in O30793_PREIN.","","Tue Jun 12 16:32:28 MDT 2001","","Tue Jun 12 16:32:28 MDT 2001","Tue Jun 12 16:32:28 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Tue Jun 12 16:32:28 MDT 2001","Tue Jun 12 16:32:28 MDT 2001","","","Fri Jan 19 10:18:10 MST 2001","Tue Jun 12 16:39:29 MDT 2001","Tue Jun 12 16:32:28 MDT 2001","","Tue Jun 12 16:32:28 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Jun 12 16:32:28 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 38 to 167 (E-value = 7.2e-37) place PG0065 in the Amidase_4 family which is described as Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase (PF01832)Residues 270 to 313 (E-value = 5.1e-07) place PG0065 in the LysM family which is described as LysM domain (PF01476)","Tue Jun 12 16:32:28 MDT 2001","34539947","","","","","","1","","","PG0076" "PG0066","92354","91659","696","ATGGGACAACCACCAAAAAGAGAAATAGAACGACTAAAACGTGAAAAGCGAGAAGCAAAAGCCGCAAGAAAACGCAAAGAGAATACCCGGGACATAATAGTTCGATTCCTGATCGTTTGTGAAGGACAAAAGACGGAACCCAACTATTTTAAGGCTTTGATTGACAACCACTACTCGGAAGTTCGTGAGGCAGAGATTAGGGGACAAGGTTGTTCTACTTGTGCATTAGTCGAACGAGCCAAAGAGATTCGGGATAATCTCGAAAAAGAGCGTGAATTAGGCTTTGATCGGATTTGGGTTGTCTTTGATAAAGACGATTTTGATGATTTTAATCAAGCTATCGACCTTGCAAAGAGCTATGGTTTCGGATGCGCTTGGACAAACGAAGCTTTTGAATTGTGGTTCCTTCTCCATTTCCAATATCTGGATGTACCTATCAGCCGTGATGCTTACATTTCCAAACTTGAAAACTTGATACAAAAGCGACTTAATGATAATTCTTTCCGATACAATAAGAATGATCCCTCCTTTTACAACATATTGAAAGACCATGGAGATGGAATTTTAGCAAAGCGATATGCCGAAAAACTTCGCTTGAAACACAAGGATAAAGATTATGCTAATCACAACCCCTGTACAAGGGTCGATCTATTGGTTGAGGAATTGGAAAATCCCCTGTCCGTATTAAAGAACAAA","8.10","2.99","27462","MGQPPKREIERLKREKREAKAARKRKENTRDIIVRFLIVCEGQKTEPNYFKALIDNHYSEVREAEIRGQGCSTCALVERAKEIRDNLEKERELGFDRIWVVFDKDDFDDFNQAIDLAKSYGFGCAWTNEAFELWFLLHFQYLDVPISRDAYISKLENLIQKRLNDNSFRYNKNDPSFYNILKDHGDGILAKRYAEKLRLKHKDKDYANHNPCTRVDLLVEELENPLSVLKNK","92354 91659","TIGR ID: PG0078","conserved hypothetical protein","Cytoplasm","Its nearest neighbor in the NR database is gi:34762670 from Fusobacterium nucleatum subsp. vincentii ATCC 49256.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Mar 1 09:34:48 2005","Tue Mar 1 09:34:48 2005","Fri Jan 19 12:46:24 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 1 09:34:48 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34539948","","","","","","1","","","PG0078" "PG0067","93628","92330","1299","ATGTTGGTCAACTTCACTTTTAAGAATTTCCGCTCATTCAGAGATGAAAAAACTTTGAGCATGGAAGCTTCTGCCATCAAAGAACTTTCCAAATCTGTCATTAGGAAAGGAGCTTACAAACTCCTTCCGGCAGCCGTTTTATACGGAGCCAATTCAAGTGGAAAAAGCAATGCTCTTTTTGCTTTGGCCAAAATGCGTAGCATCGTATTGGATTCGGTAAAATTGAACCCTCAGGATACTCTTCGTTTCGACCCGTTTATGTTGGATCGGGAATCTGCCCAAAAACCAACTTCTTTTGAAATACAATTTTTGAAAGACGGTGTAAAATACAGATATGGTTTCGAGTATGATAAAACCCGTATCATTAGTGAGTGGCTATATGAAAAGCAAGAAAAGGAGAGGGAGTTCAATTTGTTTCTTCGTGCCGGAAGCGAGTTCGAAATATCCAAGAAGCGATTTCCGGAAGGTGATAGCAAAGCAGATGCTACGCCCGGGAATAGACTTTTTGTGTCCTTGTGTGCGCAGCTAAATGGAAAGAAATCATCTTCTATTTTGGACTGGTTTCAGCACTGCAATCTTATTTCGGTTGTAGAAAAACAGGGTTATGAAGGCTTTACCCTGAAAATGCTCAAAGAAAATCCGGAAGGATGTAATGAAGCCAAAGACTTCTTCCGTCGCACGCAGTTAGGATTCAAAGACTTGATCGTCACAGAGCAACCTCTTTCGAACGATGTACTCAAGGAAGTACCGGATGAATTGAAAGAATTCATATTGAAAGAATTCGATGGCCGAAGCGTATTAGAAATCAAAACTTCTCATTGGGTATATGACCAAGACGGTAATCAGGTCGAGGAAAAAATTTTCGCCAAGGATGAAATGGAATCGGAAGGAACCAAGAAAGTCATAGAGCTTTCAGGCCCTTTATTCGACACATTGAAAGAAGGTTCTGTTTTGCTGATAGACGAATTAGATGCCAAACTCCACCCCCTTTTGACCAGAAGTATTCTGAAGTTGTTTATGTCTCCGGAGACAAATCCCAATGGAGCACAGTTGATCTTTAATACTCACGACACAAATCTGCTGAAGGGCGATTATTTACGCCGTGATCAAATCTGGTTCACGGAAAAAGACAGGACAGAATCCTCCGATCTTTATTCATTGATAGAGTTTCGAGATGCAGAAGGAGTAAAAGTTCGTAAAGATCGGAGTTTTCAAAACGACTATATTAACGGACGTTATGGAGCTATCCCGTTCATTTTTTCAAGTGTAGAGCCATGGGACAACCACCAAAAAGAGAAA","5.90","-3.88","50017","MLVNFTFKNFRSFRDEKTLSMEASAIKELSKSVIRKGAYKLLPAAVLYGANSSGKSNALFALAKMRSIVLDSVKLNPQDTLRFDPFMLDRESAQKPTSFEIQFLKDGVKYRYGFEYDKTRIISEWLYEKQEKEREFNLFLRAGSEFEISKKRFPEGDSKADATPGNRLFVSLCAQLNGKKSSSILDWFQHCNLISVVEKQGYEGFTLKMLKENPEGCNEAKDFFRRTQLGFKDLIVTEQPLSNDVLKEVPDELKEFILKEFDGRSVLEIKTSHWVYDQDGNQVEEKIFAKDEMESEGTKKVIELSGPLFDTLKEGSVLLIDELDAKLHPLLTRSILKLFMSPETNPNGAQLIFNTHDTNLLKGDYLRRDQIWFTEKDRTESSDLYSLIEFRDAEGVKVRKDRSFQNDYINGRYGAIPFIFSSVEPWDNHQKEK","93628 92330","TIGR ID: PG0079","possible abortive phage resistance protein","Cytoplasm","A single hit in gapped BLAST to an abortive phage resistance protein from Lactococcus lactis (U94520): residues 1-417 are 45% similar to this protein.","
noIPR
unintegrated
unintegrated
SSF52540\"[2-362]TSSF52540


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 1-417 are 28% similar to a (ABORTIVE PHAGE RESISTANCE PROTEIN) protein domain (PD141879) which is seen in O06042_BBBBB.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Jan 19 12:50:07 MST 2001","Fri Jan 19 12:50:07 MST 2001","Fri Jan 19 12:50:07 MST 2001","","Mon May 21 16:48:08 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon May 21 16:48:08 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon May 21 16:48:08 MDT 2001","34539949","","","","","","1","","","PG0079" "PG0068","93922","93662","261","TTGCTATTCCTAAAAACGTGGCGCGAAAAAATTTCCGCTCTCGCGCGAGATTTTTTCAAAACCCGAACCAAAACGAAAAAATTTTGGCGCGACTTTTTCAAGATTGCGGCGCGACTTTCCGGCGATTTCCGGCTCGAGATTTGTTGTTCTTCTTTTGTCTACAATCTTTCTTATGGTGTATCTTTTGCTCCCTGCAAAGAACGCAAGGCCGCTATTTGTGAGATTTTTTCTCGTTTTTCTTGCTTTTCCGGGCTTGTTAGA","10.70","10.74","10239","LLFLKTWREKISALARDFFKTRTKTKKFWRDFFKIAARLSGDFRLEICCSSFVYNLSYGVSFAPCKERKAAICEIFSRFSCFSGLVR","93922 93662","Both PG0068 and PG0478 are extremely short but conserved. Correct punctuation?TIGR ID: PG0080","conserved hypothetical protein","Periplasm, Cytoplasm","No significant hits to gapped BLAST.","
InterPro
IPR012456
Family
Protein of unknown function DUF1661
PF07877\"[14-44]TDUF1661


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Fri Jan 19 13:00:04 MST 2001","Fri Jan 19 12:58:39 MST 2001","Fri Jan 19 12:58:39 MST 2001","Fri Jan 19 12:53:46 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1-44 are 68% similar to PG0478, a conserved hypothetical protein.","Wed Mar 28 15:43:59 MST 2001","Wed Mar 28 15:43:59 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Mar 28 15:43:59 MST 2001","34539950","","","","","","1","","","PG0080" "PG0069","93945","96119","2175","ATGCAGAGCGAGGAGAGATGGCTGCAATGCTTTTGTATTGTTCGTCAAGGAGTAAAACCGCGCAAGAGGTTTTGTTCCTTCTTCCTGTGGCGCGTCGGAGCGGAGGAGACCGCGAGGGGGCTTTTGGCAGAGGGAGAAGTATCGGTCGAAAACAGTATTTTTGTGGCCAAAGCACCTATATTTCTTAGGGTTATGAGAAAGAACCGTTTCGGCCGATTGCAGCTTGCCGTCGTGGCAGCTGTCATTATAGGCTTGTGGATGCTCTCGGCATGTGCCAATATGGGTACGCCGGAGGGGGGGCCTTATGATGTGACGCCCCCGCGTTTGCTCAAGGCTACGCCGGCAATGGGTAGCACGAAGCAAACAGGCAATAAGATCTCCCTCCTATTCGATGAAGCTATCCAGATATTGAAACAAAACGAGACGGTGATCGTCTCGCCACCACAGATCAAACAGCCGAAAATATCCGTCTATGGCCGCATGCTGACCATCGAGCTGCGCGACAATCTTCGCGACAGTACCACCTATACGATCGACTTTACCAACGGTTTGGCCGACAACAACGAAGGGAATATCCTGGAAAACTTCTGCTATGCTTTTTCCACCGGCGATGTACTTGATTCGATGCAGATCGGCGGCCGGGTGATCGATGCCCTGACGTTGGAGCCGGTGGCAGGTGTCTTGGTCGGCATTCACGATTCGGAAGCGGATACGGCTTTCACGAAGACTCCTTTCCTGCGTACTACACTGACGGGAGAGGACGGCTCCTTCACGTTGAAAAATCTCCACGACGGCCGCTACAAAGTCTTTGCCCTTCAGGACGCCGATCGCGACTACGCCTATAGCCAGTTGTCCGAAGGCGTTGCTTTTTCTCCGGATTGGTACCGTACCGAGGTGGCAGATGATGCCTTGCCTTCGGATACACTCTTGGCCAATGCCGATACCCTTATGCCGGTGGATTCGGCAATGGCGGAAAAAGGGAAAACATCCACTCTCCAGGAAACACCGGCCGAATCGGCGGCAGCGAATACATCGCTTCGGCAACAGCCTGTCCGGTATCGCCCCGACAACGTTCTGCTCCGATTCTACACCTCCGACTTCCGGCGGGAATATCTATCCAAGAAAAGTCGTCCCGATTCCGTACAAGTGTCTCTACTATTCAACACAAGACCTGATACCATTCCGGCACTGCACCTGCTGGGAGAGCAAAAGGGAAAAAACTGGTATTCGGCTATCAGAAAAGGTGAGAAAGAGATCGTCTACTGGCTGACGGATAAAGAGATCTATAGCCGAGACACTTTGGCCTTTTCGGTCACTTACCCCAAAAGCGACTCGCTCAACATTCCACGGCCACAGACGGACACCTTGCGGATGGCCAAGCCGAAAGTATCCGTACAGCGCCGTCCGAAAGGCGAAGCAGCAGCCTCTGCTCCTCTTATGAATATATCCATCAAGAATAGTAGCAGCATAGCATCGGGTACTCCGGGCGATACCATCAGTATCATAGCATCCCAACCGTTGGCTCTCGTGGATACGGCAGGCGTTTCCGTAGCACGGCAAGCGGATAGCTTGTGGCGCGATGTCCCGTTCAAGCTCCGTCCCGATTCGCTCAATCCGCTGAAGTTCTTCGTCGATGCCGGCTGGCAGATGGGGCAGAGCTACCGCGTACGGATCGACTCGGCCGTCTGGCGAAGCGTGTACGACCGGTGGAACGCCCCCGTGGAGCAGGTGTTTTCGTTCCTTCCGGAGGAGGATCTCAGCAGCCTGTTACTGAAGTTGTCGGGAGAGGCTGACAGTACTGCCGTAGTGGAACTGCTGAATAAGGGTGGAGAGCCCGTAGCGACAAAGAAAGCAGAACGGGGAGAAGTCCTCTTCCCGTACCTCAAGCCCGATGTCTACTATGCACGCCTGTTTCTCGATGAGAATGGCAACGGTCGCTGGGATGCCGGCAATTACCCAACAAAGCAGCCCGAATGGGTGTTCTACTACCGCCAATCGTTTACCCTCAGGAAGAACTGGCAGCAGGCCGAAGACTGGGTAGTCACTCGTGAGCAGTATGCCGATCAGAAACCGGAAGCTATCCGAAAGGTAAAACCCGCAGAGAAGCAAAAGCGCGACCTCAACAGGGAATACGAGGAGCGAATGGCTCGCAGATCGAAGAAAAAGAGTAAGAAG","9.40","8.56","81642","MQSEERWLQCFCIVRQGVKPRKRFCSFFLWRVGAEETARGLLAEGEVSVENSIFVAKAPIFLRVMRKNRFGRLQLAVVAAVIIGLWMLSACANMGTPEGGPYDVTPPRLLKATPAMGSTKQTGNKISLLFDEAIQILKQNETVIVSPPQIKQPKISVYGRMLTIELRDNLRDSTTYTIDFTNGLADNNEGNILENFCYAFSTGDVLDSMQIGGRVIDALTLEPVAGVLVGIHDSEADTAFTKTPFLRTTLTGEDGSFTLKNLHDGRYKVFALQDADRDYAYSQLSEGVAFSPDWYRTEVADDALPSDTLLANADTLMPVDSAMAEKGKTSTLQETPAESAAANTSLRQQPVRYRPDNVLLRFYTSDFRREYLSKKSRPDSVQVSLLFNTRPDTIPALHLLGEQKGKNWYSAIRKGEKEIVYWLTDKEIYSRDTLAFSVTYPKSDSLNIPRPQTDTLRMAKPKVSVQRRPKGEAAASAPLMNISIKNSSSIASGTPGDTISIIASQPLALVDTAGVSVARQADSLWRDVPFKLRPDSLNPLKFFVDAGWQMGQSYRVRIDSAVWRSVYDRWNAPVEQVFSFLPEEDLSSLLLKLSGEADSTAVVELLNKGGEPVATKKAERGEVLFPYLKPDVYYARLFLDENGNGRWDAGNYPTKQPEWVFYYRQSFTLRKNWQQAEDWVVTREQYADQKPEAIRKVKPAEKQKRDLNREYEERMARRSKKKSKK","93945 96119","TIGR ID: PG0081","conserved hypothetical protein","Outer membrane, Periplasm","Matches in gapped BLAST to gi:29348750 from Bacteroides thetaiotaomicron VPI-5482.","
InterPro
IPR008969
Domain
Carboxypeptidase regulatory region
SSF49464\"[210-271]TCarboxypepD_reg


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Mon Dec 22 10:37:49 2003","Tue Mar 1 09:51:46 2005","Tue Jan 30 13:45:26 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Dec 22 10:37:49 2003","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34539951","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Tue Mar 1 09:51:46 2005","","1","","","PG0081" "PG0070","96184","97083","900","ATGAAGCAAAGATTTTCGACTATCGGCATACCGCTCATATTCGTTTTGGGAGTATTGCTGTCGGGTTGTTACGGATTCGATCCGATCAAGGATAAACAAAACAAGCTGAAGGAAGAACTCAATAACGGAGGCAGCGAGACTTCGCCGACTCCTCCGGAGGGACAGTCGGTATTCGATGTCCGTTTTTCTTTCGAGAAGTGGTCGGACACAACTCCTGCCCTGCCGTTGGGAGAGGGGGGATTTTCCTCCTCTTTTTGGGCTTCTGCCAGCAATGAGGGATTTAAGGCTATGCCCAATCCCACACTGCCGTACCCGGTCACACTCGCTGACGAAGGTTATCAGGGTCGTTGCGTGCGGATGCTTACCCGACCCGGGATCAAGGTATACGGCATGGGTAGTTATCTGGTGGCGGCATCGCTTTTTTCCGGTAAGGTCGATGTATCGAAACTGATCTCTGCCCCATTGGAAGCCACTTACTTCGGGCACAGAGTACGCCAGCGTCCGATTCGGCTGCGAGGTTACTATCGATACAAGGCCGGAAGCAAATATATCGATGGCAGCATAGGGCCGGATGCCGTGCTGGAAGGCAAAGACCAATGCACGATCGCCGGCGTATTCTATGAAGTAACTGAAGATACGCCCTACTTGAATGGCAAGAACCTCTATACTGCACCGTCCATCGTATCTATTGCCAAAGTGATAGCAAATGATACGGATGGGTGGCAGCCGTTCGATCTCACGTTCCGATCCGTTGGCAATAAAGTCGTGGACTTGGCCAACAAGCAGTACCGCTTGGCTCTGGTCTTTTCGTCTTCATCGCGTGGAGACGAGTATATCGGCTCCGTGGATAGCGAACTGCTTGTCGATGAAGTAACCCTTACGCTGACTACTTTACCCGAA","5.60","-1.89","32843","MKQRFSTIGIPLIFVLGVLLSGCYGFDPIKDKQNKLKEELNNGGSETSPTPPEGQSVFDVRFSFEKWSDTTPALPLGEGGFSSSFWASASNEGFKAMPNPTLPYPVTLADEGYQGRCVRMLTRPGIKVYGMGSYLVAASLFSGKVDVSKLISAPLEATYFGHRVRQRPIRLRGYYRYKAGSKYIDGSIGPDAVLEGKDQCTIAGVFYEVTEDTPYLNGKNLYTAPSIVSIAKVIANDTDGWQPFDLTFRSVGNKVVDLANKQYRLALVFSSSSRGDEYIGSVDSELLVDEVTLTLTTLPE","96184 97083","TIGR ID: PG0082","conserved hypothetical protein","Outer membrane, Periplasm","Its nearest neighbor in the NR database is gi:29347491 from Bacteroides thetaiotaomicron VPI-5482.","
noIPR
unintegrated
unintegrated
PS51257\"[1-23]TPROKAR_LIPOPROTEIN


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Mar 1 09:53:53 2005","Tue Mar 1 09:55:53 2005","Tue Jan 30 13:47:54 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 1 09:53:53 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34539952","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Tue Mar 1 09:55:53 2005","","1","","","PG0082" "PG0071","97092","97874","783","ATGAACCGGCGATATTTTCTTTTGAATGCTTGCTTTTGGAGCCTCTGCTTCATCCTGTCGGCTCAGGAGTCGAACGCTTCTGTCCGGCCGTCGCTTTGGGAGTTTTCCAGCAGAGTGGGTATGCATGTGGGAGCATCCACACCGGTACCCGTACCCCAAGCCATGGAGCACGTCTACGCGTGGTATCCGCGACTGAATCCGATGGTGCAACTGAGTGCTTCGCGTCGTTTGCTTGCCGGCAGTCCGTGGGCTGTGAACGTGGGTATAGCCGTAGAGAAAAAAGGCATGGAAGCTACTACACGAGTGAAAGATATGAAAGTAGCTATCGTGTCGGACTCGCCTTATGCCGGCAACCCTGATGAAGAATATCCGGGACTATTCACCGGCGACAACAATACGGAGATACGCCTGGGCTACCTGACGATACCCGTACAGGCGGAATACAATATGCTCAAGGACAGGCTGAAGCTGCGCGGAGGTCTCTATACGTCCCTGCTGCTGGAGAGTTCCTTCCGCGTGATCATCGACGGTACGATGGTCTATGACGATCCCAAGCTGGGAACAGCGCAGATGGATCTGCGCGAACTGAACTTCTCGGACAAGATAAAGGGAGCGGATTTCGGTGTCATAATAGGAGCCGACTATTATTTCGCGCGACAGATAGGTGCGTTTGCCGATGTCACATTCGGCCTGATCCCTCTGACGGGTACACACTTCAAGGCTATTCCTTACCGGATGTATAACGTCTTCGCACGTATCGGATTTTCCTACAGACTCAATTAC","9.10","3.63","29320","MNRRYFLLNACFWSLCFILSAQESNASVRPSLWEFSSRVGMHVGASTPVPVPQAMEHVYAWYPRLNPMVQLSASRRLLAGSPWAVNVGIAVEKKGMEATTRVKDMKVAIVSDSPYAGNPDEEYPGLFTGDNNTEIRLGYLTIPVQAEYNMLKDRLKLRGGLYTSLLLESSFRVIIDGTMVYDDPKLGTAQMDLRELNFSDKIKGADFGVIIGADYYFARQIGAFADVTFGLIPLTGTHFKAIPYRMYNVFARIGFSYRLNY","97092 97874","TIGR ID: PG0083","hypothetical protein","Inner membrane, Cytoplasm","No signnificant hits in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-26]?signal-peptide
tmhmm\"[5-23]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Jan 30 13:50:10 MST 2001","Tue Jan 30 13:50:10 MST 2001","Tue Jan 30 13:50:10 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34539953","","","","","","1","","","PG0083" "PG0072","97972","99168","1197","ATGGAATCGATAACCCAAATATATCGCATCGGCTACGGTCCGAGCAGTAGCCACACGATTGGCCCACGTCGGGCTGCTGAGATGTTTCTCGATCGGAACCCCCGGGCGACCTCTTTCCGTGTTACGCTATACGGCAGCCTTGCTGCCACGGGCAAAGGACACCTCACGGATGCAGCTATCCTTGCCGTCTTGGAAGCAAAGGCTCCGACCGAAATCGTTTGGAAACCGGAGATCTTCCAAAATTTTCACCCCAACGGCATGCTCTTCGAGAGCTTCGACAAAGAGGGCAAGCAGCTCGACGACTGGCTCATCTATAGCATCGGCGGCGGAGTCTTGGCCAACGAACACTTCAACGAACAGCGAGGTCGCGAGGTATATCCGCTCAGCAAGATGGCAGATATTCTCGACGAACTGAACAGGCGCGGCCTAAGCTATTGGGAGTATGTGGAAGAAAACGAAGATCCCGATATATGGGACTATTTGGCTGAGGTCTGGTCGGTAATGCGGAGCGCCATTCAGGAGGGGCTCGATGCTGAGGGGGTGCTGCCGGGTGGACTGGGCGTTCGCCGGAAGGCAGCCAGCTATCTGATTCGTGCGCAGGGGTATTCGCCGGGTGTACGAAGCCGAGGCAATGTATATGCCTATGCTTTGGCTGTGAGCGAACAGAATGCATCGGGTGGCAAGATCGTAACGGCGCCGACATGTGGGTCGTGCGGCGTTGTACCGGCGGTACTCCACCACCTCCAACAGACTCGTGACTTCAGCGATAAGCGCATATTGCGTGCACTGGCTACGGCCGGCCTTTTTGCTAATGTGGTACGCACCAATGCTTCTATTTCGGGTGCAGAAGTCGGCTGTCAGGGCGAAGTGGGAGTGGCTTGTGCCATGGGAGCGGCAGCCAGCAGCCAGCTATTCGGGGGTACCCTGTCCCAAATCGAATATGCTGCAGAGATGGCTTTGGAGCATCACCTCGGACTGACCTGCGACCCTGTATGCGGATTGGTGCAGGTACCTTGTATCGAACGAAATGCCTTTGCGGCAGCACGAGCTTTGGATGCCAATACTTATGCCAATTTCAGCGATGGCAGACACCGCATTTCGTTCGATCAGGTCGTGGAAGTGATGCGTCAGACGGGCAAGGATTTGCCGAGTCTATATAAGGAAACCTCTCAGGGTGGATTGGCCATAGTACACTGC","5.90","-6.95","43271","MESITQIYRIGYGPSSSHTIGPRRAAEMFLDRNPRATSFRVTLYGSLAATGKGHLTDAAILAVLEAKAPTEIVWKPEIFQNFHPNGMLFESFDKEGKQLDDWLIYSIGGGVLANEHFNEQRGREVYPLSKMADILDELNRRGLSYWEYVEENEDPDIWDYLAEVWSVMRSAIQEGLDAEGVLPGGLGVRRKAASYLIRAQGYSPGVRSRGNVYAYALAVSEQNASGGKIVTAPTCGSCGVVPAVLHHLQQTRDFSDKRILRALATAGLFANVVRTNASISGAEVGCQGEVGVACAMGAAASSQLFGGTLSQIEYAAEMALEHHLGLTCDPVCGLVQVPCIERNAFAAARALDANTYANFSDGRHRISFDQVVEVMRQTGKDLPSLYKETSQGGLAIVHC","97972 99168","TIGR ID: PG0084","L-serine dehydratase","Cytoplasm","Many hits in gapped BLAST to L-serine dehydratase sequences, e.g. residues 3-396 are 41% similar to the enzyme from P.aeruginosa (AE004671). Residues 1-395 are 40% similar to the enzyme from N. meningitidis (AE002378).This sequence is similar to BT4678.","
InterPro
IPR005130
Domain
Serine dehydratase alpha chain
PF03313\"[129-397]TSDH_alpha
InterPro
IPR005131
Domain
Serine dehydratase beta chain
PF03315\"[3-120]TSDH_beta


","BeTs to 4 clades of COG1760COG name: L-serine deaminaseFunctional Class: EThe phylogenetic pattern of COG1760 is --------EBrhuj-------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 142-396 are 46% similar to a (L-SERINE DEHYDRATASE DEAMINASE SDH LYASE IRON-SULFUR) protein domain (PD008627) which is seen in SDHL_STRCO.Residues 1-73 are 49% similar to a (L-SERINE DEHYDRATASE DEAMINASE SDH LYASE IRON-SULFUR) protein domain (PD009440) which is seen in SDHX_ECOLI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Jan 30 13:56:54 MST 2001","Mon Jan 5 15:23:42 2004","Mon Apr 23 17:45:12 2001","","Mon Apr 23 17:45:12 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Apr 23 17:45:12 2001","-45% similar to PDB:2IQQ The Crystal Structure of Iron, Sulfur-Dependent L-serine dehydratase from Legionella pneumophila subsp. pneumophila (E_value = 2.2E_15);-45% similar to PDB:2IAF Crystal structure of a fragment (residues 11 to 161) of L-serine dehydratase from Legionella pneumophila (E_value = 2.4E_14);-44% similar to PDB:1PCI PROCARICAIN (E_value = 2.4E_14);-63% similar to PDB:1O6B Crystal structure of phosphopantetheine adenylyltransferase with ADP (E_value = 2.4E_14);-41% similar to PDB:2D6F Crystal structure of Glu-tRNA(Gln) amidotransferase in the complex with tRNA(Gln) (E_value = 2.4E_14);","","","Residues 3 to 120 (E-value = 8.2e-15) place PG0072 in the SDH_beta family which is described as Serine dehydratase beta chain (PF03315)Residues 129 to 397 (E-value = 4.9e-105) place PG0072 in the SDH_alpha family which is described as Serine dehydratase alpha chain (PF03313)","Mon Jan 5 15:23:42 2004","34539954","","","","","","1","","","PG0084" "PG0073","99312","100613","1302","ATGGATCGTGAATGGACCTTCAAGATACCTTATCTGGGATCACGCCCCACGCATTGGGCTATCAAGCATTTGCCCGAAGGATTTACATTCGATTCCCACGAAGGAATTATTCGCGGTAAGGCTTCTTCTCGCATCGTATTCGAATTTGAAATATCAGCAGCCAACGAATCGGGTGCCGACAGTTGCATTTGGCAGGTGGAAGTGAGTCGGTATAATGGATTGGCTCCCGTTATGGGTTGGAGTACACGTTGGCTGAAGGAGAAAGAAATAAACGAGCAGACTATTTTGGATGTGGCCGATGCGATGCAAAGTAAAGGACTGGTTGCAGCCGGATATAACCATATCATCATAGAAAGCCACTGGCAAACGTCCGTACGTGATAGCGACGGGAGAATTAAGGCGGATCCTTTACGTTTCCCCAATGGGATCAAACATTTGGCCGATGAACTGCATCGTCGCGGTATGCGGCTCGGCCTTTCCTCCAATGCATCTCCTCTTAACGTTCATGGCTTGAGTGGTAGTTTTGAGAAAGAGGCGATAGATGCCGCCACATTCTCCGAGTGGGGTGTGGATTTTATCAAATACGACTACTGCTGTTCACCGCCTATATCCATCGTTGCGCAGCAACGGTATGGTGCCATGGGGCGCGCACTTGCGGCAACGGGACGTCCTCCGTTCTTCTCCGTATGCGAATGGGGTGAATTGATGCCCTGGTCTTGGGGCATAACGGTGCGTGCCGGCAGTTGGCGTACCTCTTTCGACATTCAAGACAAGTGGAAAGCTGGTCGATATTCTAAACGCGACAATGGTATTTGGGATGCAGCAATGATCAATTTGCGCTACGCTCAGCATGCCAATCGTGGCCGCGCGATCTCCGATCCGGATCTGCTATTGATAGGAAGCCCCTCCAACGGTTGTACAGCGGAAGAATACCATGCACAAATGCAAATGTGGGCGATGATGCGCGCTCCGCTGGTCTTTGCTGCCGATCCGCGCTCCGTATCGGCGGAGGCGGTAGCACTGCTGACGCATCCCGATCTGATTGCAGTCGATCAGGATGCTTCTTTCCGTAATATCGTGGAGGAACGTCGTGCTGACGGTACACATTTGTGGACACGTCAGCTGACGAAAGGAACGGCCGTCTTGGTTGTGAATGCAGGAGAAAGCCCGACGACAACGAGCATCGCTTCACGCCCCGACTCATCATCTGCGTGGGACGTATCGCGAGCTGCTTATGTGCCGCCGAGTGACTTGGGACGAATCGTCCTGTCGCCGCACGCAGCCCGACTGTTTGTTTTCGAA","6.80","-1.08","48256","MDREWTFKIPYLGSRPTHWAIKHLPEGFTFDSHEGIIRGKASSRIVFEFEISAANESGADSCIWQVEVSRYNGLAPVMGWSTRWLKEKEINEQTILDVADAMQSKGLVAAGYNHIIIESHWQTSVRDSDGRIKADPLRFPNGIKHLADELHRRGMRLGLSSNASPLNVHGLSGSFEKEAIDAATFSEWGVDFIKYDYCCSPPISIVAQQRYGAMGRALAATGRPPFFSVCEWGELMPWSWGITVRAGSWRTSFDIQDKWKAGRYSKRDNGIWDAAMINLRYAQHANRGRAISDPDLLLIGSPSNGCTAEEYHAQMQMWAMMRAPLVFAADPRSVSAEAVALLTHPDLIAVDQDASFRNIVEERRADGTHLWTRQLTKGTAVLVVNAGESPTTTSIASRPDSSSAWDVSRAAYVPPSDLGRIVLSPHAARLFVFE","99171 100613","Most hits are to eukaryotic and plant sequences. No hits to the first 30 amino acids, and only one protein hit contains a region similar to the amino acid residues 30-60. (start = 99312, stop = 100613). Is this the right start coordinate?TIGR ID: PG0085","alpha-galactosidase","Cytoplasm, Periplasm","Several hits in gapped BLAST to alpha-galactosidase sequences, in particular to plant enzymes, e.g. residues 72-407 are 36% similar to residues 64-382 of a putative alpha-galactosidase from Arabadopsis (AL163763). Residues 74-387 are 36% similar to the enzyme from S.coelicolor (AL110470).","
InterPro
IPR000111
Family
Glycoside hydrolase, clan GH-D
PD002572\"[172-355]TGlyco_hydro_GHD
PF02065\"[77-387]TMelibiase
InterPro
IPR002241
Family
Glycoside hydrolase, family 27
PR00740\"[106-121]T\"[147-168]T\"[181-198]T\"[210-228]T\"[309-330]TGLHYDRLASE27
InterPro
IPR013785
Domain
Aldolase-type TIM barrel
G3DSA:3.20.20.70\"[68-355]TAldolase_TIM
noIPR
unintegrated
unintegrated
PTHR11452\"[70-388]TPTHR11452
SSF51445\"[68-354]TSSF51445


","No hit to the COGs database.","***** IPB000111 (Alpha-galactosidase) with a combined E-value of 1.1e-24. IPB000111B 111-121 IPB000111C 126-168 IPB000111D 178-200","Residues 73-432 are 33% similar to a (ALPHA-GALACTOSIDASE HYDROLASE GLYCOSIDASE PRECURSOR) protein domain (PD002572) which is seen in AGAL_CYATE.","","Tue Jun 12 16:40:16 MDT 2001","","Tue Jun 12 16:40:16 MDT 2001","Tue Jun 12 16:40:16 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Tue Jun 12 16:40:16 MDT 2001","Tue Jun 12 16:40:16 MDT 2001","","Tue Jun 12 16:48:41 MDT 2001","Tue Jan 30 14:31:51 MST 2001","Tue Jun 12 16:48:41 MDT 2001","Tue Jan 30 13:58:49 MST 2001","Mon Apr 23 17:55:52 2001","Mon Apr 23 17:55:52 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Apr 23 17:55:52 2001","-54% similar to PDB:1UAS Crystal structure of rice alpha-galactosidase (E_value = 1.3E_45);-51% similar to PDB:1R46 Structure of human alpha-galactosidase (E_value = 3.6E_43);-51% similar to PDB:1R47 Structure of human alpha-galactosidase (E_value = 3.6E_43);-49% similar to PDB:1KTB The Structure of alpha-N-Acetylgalactosaminidase (E_value = 2.5E_36);-49% similar to PDB:1KTC The Structure of alpha-N-Acetylgalactosaminidase (E_value = 2.5E_36);","","","Residues 77 to 387 (E-value = 2.8e-06) place PG0073 in the Melibiase family which is described as Melibiase (PF02065)","Mon Apr 23 17:55:52 2001","34539955","","","","","","1","","","PG0085" "PG0074","102449","100638","1812","ATGAAAACATTTGAAGAATTAGGCATTGCCAAACCGTTTTTGAAAGCAATTGCCGAATTGGGCTTCGAACAGCCCATGCCTGTGCAGGAAGAAGTAATACCCTATCTCCTCGGAGAGGACATCGACCTGATCGCTTTGGCACAGACCGGCACAGGCAAGACTGCCGCTTTCGGCCTTCCGCTGCTCCAGAAAATTGATTTGTCGGGAGGACGACCGCAGGCTTTGGTACTCTGCCCGACTCGCGAACTGTGTCTACAGATAGCAGACGACTTGAACAGCTATTCCAAGTATTTGTCCGATGTGCACATCCTACCCGTTTACGGAGGTACGCCTATAGATGCGCAGATCAGAGCCTTGCGCCGTGGTGTGCAAATCGTCGTGGCAACGCCCGGCCGTCTCCTCGACCTGATGCGCCGTGAGGCCGTCAGCCTGTCGGACATTCATACGGTAGTATTGGATGAAGCGGATGAAATGCTCAATATGGGCTTTGCAGAAGATCTGGAGCAAATCCTCGCAGATATTCCATCCGAACGCCATCTGCTATTGTTTTCGGCTACGATGCCCAAAGAGATCTCCAAGATCGCCACTTCGTACATGAAGGACCCCAAGGAAATTGTTATCGGCAATAAGAATGAGGGCAATGCCAATATCAAGCATCTATACTACATGGTCTCGGCGCGCCATAAATATCTTGCGCTAAAGCGAATTGCCGACTACTATCCCAATATCTATGGTATTGTTTTCTGTCGCACCCGTAAGGAAACGCAGGAGATTGCCGATCAACTGATTCAAGACGGCTATAACGCGGATTCTCTTCATGGCGATCTCAGTCAGGCTCAGCGCGACTATGTGATGCAGAAGTTTCGCGTCCGCAACCTTCAACTGCTCGTTGCCACCGATGTGGCTGCCCGCGGATTGGATGTGAACGATCTGACCCATGTGATTCACTTCGGTCTTCCCGATGATGTAGAGAGCTACACCCACCGCAGCGGTCGTACAGCTCGTGCAGGGAAAACAGGTCTTTCGATCGCCATCTGCCATGTCAAGGAGAAAGGCAAAATCAAGAATATAGAGCGCACGATGCAGAAGCAGATCGAACGTGCACGCATCCCTTCCGGAGCAGAGATATGCGAAAAGCAACTGTTCAATCTGGCCGATCGTATAGAACGTGTGGATATAGAGAACACAACGGCCATCGACTCTGTCTTGAACGAAGTGAACAAGAAGCTCGAATGGATTGAAAAAGACGAATTGATTCGTCGGGTAATGGCATTGGAGTTCAATCGCATGCTCGACTATTACCAACGTGCCGAAGACGTGGAAGAAGTGGTCGAGAGAAAAAAAGACGAGGTTTCGGGAGATCGTAAAAACCGAAAACGAGGAGCCGGCGAAGCAGAAGAAGGGATGACCCGTCTGTTCATCAATTTTGGCAAGATGGATCAAATGTTTCCCAACCGACTGATCGAGCTGATCAACCGTTGTATCCCGGGGCGTGTCAATATCGGACGGATCGACCTGATGCCCCGATTCGCTTTCTTCGATGTAGACGAGTTCGAAGCCAAGAACGTAGTAGAAACCCTCAATCGGTACGAAGTGGATGGTCGCCGCATCCATGTAGAGTATGCGGATACCAAGAAAGACTATGCCGGGGGGAAAAAAGGCGGAGATAAGAACTTTTCCGCTCGTCGCAAAGATTTCGACGGGCGACGTAGTGAAAATCCCACTTCACGCAAAAACAAAGGTCGCAAAGAGAAACCGACGGAAGGACGTTTCTACGACAAGTTCGACTCCAAACAGCGCAAGCGTCGGAAG","8.40","6.44","68984","MKTFEELGIAKPFLKAIAELGFEQPMPVQEEVIPYLLGEDIDLIALAQTGTGKTAAFGLPLLQKIDLSGGRPQALVLCPTRELCLQIADDLNSYSKYLSDVHILPVYGGTPIDAQIRALRRGVQIVVATPGRLLDLMRREAVSLSDIHTVVLDEADEMLNMGFAEDLEQILADIPSERHLLLFSATMPKEISKIATSYMKDPKEIVIGNKNEGNANIKHLYYMVSARHKYLALKRIADYYPNIYGIVFCRTRKETQEIADQLIQDGYNADSLHGDLSQAQRDYVMQKFRVRNLQLLVATDVAARGLDVNDLTHVIHFGLPDDVESYTHRSGRTARAGKTGLSIAICHVKEKGKIKNIERTMQKQIERARIPSGAEICEKQLFNLADRIERVDIENTTAIDSVLNEVNKKLEWIEKDELIRRVMALEFNRMLDYYQRAEDVEEVVERKKDEVSGDRKNRKRGAGEAEEGMTRLFINFGKMDQMFPNRLIELINRCIPGRVNIGRIDLMPRFAFFDVDEFEAKNVVETLNRYEVDGRRIHVEYADTKKDYAGGKKGGDKNFSARRKDFDGRRSENPTSRKNKGRKEKPTEGRFYDKFDSKQRKRRK","102449 100638","TIGR ID: PG0086","DEAD BOX-related helicase","Cytoplasm","Numerous hits in gapped BLAST to DEAD Box family sequences, e.g. residues 1-542 are 39% similar to the helicase from B halodurans (AP001515).This sequence is similar to BT3303.","
InterPro
IPR000629
Domain
ATP-dependent helicase, DEAD-box
PS00039\"[151-159]TDEAD_ATP_HELICASE
InterPro
IPR001650
Domain
Helicase, C-terminal
PF00271\"[261-337]THelicase_C
SM00490\"[256-337]THELICc
PS51194\"[235-385]THELICASE_CTER
InterPro
IPR005580
Domain
DbpA, RNA-binding
PF03880\"[457-543]TDbpA
InterPro
IPR011545
Domain
DEAD/DEAH box helicase, N-terminal
PF00270\"[26-194]TDEAD
InterPro
IPR014001
Domain
DEAD-like helicases, N-terminal
SM00487\"[21-220]TDEXDc
InterPro
IPR014014
Domain
DEAD-box RNA helicase Q motif
PS51195\"[2-30]TQ_MOTIF
InterPro
IPR014021
Domain
Helicase superfamily 1 and 2 ATP-binding
PS51192\"[34-205]THELICASE_ATP_BIND_1
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[1-207]T\"[214-377]TG3DSA:3.40.50.300
PTHR10967\"[1-487]TPTHR10967
PTHR10967:SF51\"[1-487]TPTHR10967:SF51
SSF54928\"[516-545]TSSF54928


","BeTs to 13 clades of COG0513COG name: Superfamily II DNA and RNA helicasesFunctional Class: L,K,JThe phylogenetic pattern of COG0513 is amTkYq-CEBRHujGPol--xNumber of proteins in this genome belonging to this COG is 2","***** IPB000629 (ATP-dependent helicase, DEAD-box subfamily) with a combined E-value of 2.2e-70. IPB000629A 22-60 IPB000629B 75-87 IPB000629C 147-170 IPB000629D 179-207 IPB000629E 295-345","Residues 12-104 are 49% similar to a (HELICASE ATP-BINDING RNA-BINDING PROTEIN RNA) protein domain (PD000085) which is seen in DEAD_KLEPN.Residues 217-355 are 43% similar to a (HELICASE PROTEIN POLYPROTEIN ATP-BINDING RNA RNA-BINDING) protein domain (PD000033) which is seen in Y669_METJA.Residues 106-207 are 52% similar to a (HELICASE ATP-BINDING RNA-BINDING RNA PROTEIN) protein domain (PD000276) which is seen in P96614_BACSU.Residues 245-328 are 30% similar to a (PROTEIN ORF PUTATIVE KINASE) protein domain (PD000146) which is seen in O97290_PLAFA.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Feb 2 11:42:28 MST 2001","Mon Dec 22 10:32:20 2003","Mon Apr 2 16:17:33 MDT 2001","Mon Apr 2 16:17:33 MDT 2001","Mon Apr 2 16:17:33 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG0074 is similar to PG1835, PG0381 and PG1597, all sequences with predicted helicase activity. Residues 4-390 are 35% similar to PG1835, residues 21-362 are 23% similar to PG0381 and residues 21-345 are 22% similar to PG1597.","Mon Apr 2 16:17:33 MDT 2001","Mon Apr 2 16:17:33 MDT 2001","-68% similar to PDB:1HV8 CRYSTAL STRUCTURE OF A DEAD BOX PROTEIN FROM THE HYPERTHERMOPHILE METHANOCOCCUS JANNASCHII (E_value = 2.9E_81);-58% similar to PDB:1FUU YEAST INITIATION FACTOR 4A (E_value = 3.3E_61);-57% similar to PDB:2HXY Crystal structure of human apo-eIF4AIII (E_value = 8.2E_60);-57% similar to PDB:2HYI Structure of the human exon junction complex with a trapped DEAD-box helicase bound to RNA (E_value = 8.2E_60);-57% similar to PDB:2J0Q THE CRYSTAL STRUCTURE OF THE EXON JUNCTION COMPLEX AT 3.2 A RESOLUTION (E_value = 8.2E_60);","","","Residues 15 to 220 (E-value = 1.6e-75) place PG0074 in the DEAD family which is described as DEAD/DEAH box helicase (PF00270)Residues 261 to 337 (E-value = 1.3e-32) place PG0074 in the Helicase_C family which is described as Helicase conserved C-terminal domain (PF00271)Residues 457 to 543 (E-value = 2.4e-09) place PG0074 in the DbpA family which is described as DbpA RNA binding domain (PF03880)","Mon Dec 22 10:32:20 2003","34539956","","","","","","1","","","PG0086" "PG0076","103215","102598","618","ATGAAGGCAGAAATACACAATCGAACCATCTCCGAAATACTGGCACATGAAGCTGAAGCCATCCGTACCATCCCTGCAGACAACGACTATAAGGCGGCTATCGACCTCATTGTTCGTCAAGTGCATGGCTCTAACGGTCGGCTGATAACTTCGGGTATGGGCAAGGCCGGACAGATTGCTGCCAACATAGCCACGACTTTCAGTTCCACCGGTACTCCCGCATACTTCCTTCACCCGAGCGAAGCCCAGCATGGCGATTTGGGTTTGGTGCGTAGCGGTGATATTATGCTTCTGATCAGCAATTCGGGGCGAACGCGCGAAGTACTGGAGTTGGTAGAGCTGACCAAACGCTTGGTTCCCGATACGAAATTCATCCTCATTACAGGCAACCCCGAGAGCCAGCTTGCGGCGGAGGTGGATGTCTGCCTGGCCACCGGCAATCCGGCCGAAGTATGTCCTTTGGGAATGACTCCGACTACCAGTACGACGGTGATGACAGTGATCGGCGATGTTCTGGTCGTAGGTACGATGCAGGAGATCGGCTTCGGCTTCGAGGATTATGCACGTCGCCATCACGGCGGTTATCTTGGCGACAGAAGTCGCGAAATATGTGGGCGA","5.90","-4.46","22086","MKAEIHNRTISEILAHEAEAIRTIPADNDYKAAIDLIVRQVHGSNGRLITSGMGKAGQIAANIATTFSSTGTPAYFLHPSEAQHGDLGLVRSGDIMLLISNSGRTREVLELVELTKRLVPDTKFILITGNPESQLAAEVDVCLATGNPAEVCPLGMTPTTSTTVMTVIGDVLVVGTMQEIGFGFEDYARRHHGGYLGDRSREICGR","103236 102598 [Bad Olap 99 624 99]","TIGR ID: PG0087From InterPro: IPR001347 Sugar isomerase (SIS)The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.","SIS domain protein","Cytoplasm","This sequence corresponds to gi:34396268 in Genbank.Its nearest neighbor in the NR database is gi:29340621 from Bacteroides thetaiotaomicron VPI-5482.","
InterPro
IPR001347
Domain
Sugar isomerase (SIS)
PF01380\"[47-176]TSIS
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.10490\"[4-191]TG3DSA:3.40.50.10490
SSF53697\"[4-199]TSSF53697


","BeTs to 10 clades of COG0794COG name: Predicted sugar phosphate aminotransferases involved in capsule formationFunctional Class: MThe phylogenetic pattern of COG0794 is amTk-q-cEb-huj----inxNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 71-152 are 46% similar to a (PROTEIN AMINOTRANSFERASE) protein domain (PD000868) which is seen in YRBH_ECOLI.","","Tue Jun 12 16:49:18 MDT 2001","","Tue Jun 12 16:49:18 MDT 2001","Tue Jun 12 16:49:18 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Tue Jun 12 16:49:18 MDT 2001","Tue Jun 12 16:49:18 MDT 2001","","Wed Mar 16 08:30:32 2005","Wed Mar 16 08:30:32 2005","Wed Mar 16 08:30:32 2005","Mon Apr 23 18:33:10 2001","Wed Apr 19 09:33:59 MDT 2000","Wed Mar 16 08:30:32 2005","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Wed Apr 19 09:33:59 MDT 2000","Mon Apr 23 18:33:10 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 39 to 175 (E-value = 3.1e-21) place PG0076 in the SIS family which is described as SIS domain (PF01380)","Mon Apr 23 18:33:10 2001","34539957","","","Bateman A.The SIS domain: a phosphosugar-binding domain.Trends Biochem Sci. 1999 Mar;24(3):94-5.PMID: 10203754","","Wed Mar 16 08:30:32 2005","1","","","PG0087" "PG0077","103415","104629","1215","ATGGATTATCAACTATACACGCTGCCGAGCGGTTTGCATGTGGTATATAAACCGCATGCGGGCGAAGTTACATACGCCGGCTTTGCCATAGGCGTCGGCACACGCCACGAAAGCTCGCGGCATCATGGATTGGCTCATCTGACGGAACACATGCTCTTCAAAGGCACCAGCCTGCGCAATAGCCTTCAGATCATTCGTCGCATGGAAGAGGTCGGTGCCGAGCTTAATGCTTTCACCGAGAAAGAATCCACCTATGTGTACTGCATCTTTCCGAAAGCGCACTTCAACCGTGCCACCAATCTCCTTTTCGATATTGTACAGCATAGCCGATTCCCGGAAGAAGAATTGACCAAAGAGAAAACCGTTGTTATCGACGAAATCGATTCTTATCGAGACAATCCCTCGGAACTTATATTCGACGAATTCGAGAATATCCTTTTCCGTCATCATCCTCTCGGACATAACATTCTCGGCACAGAGGCTTCTGTATCACGCATCACGGGACAAATAGGTCGTAACTTCCTCCGTCGCCACTACCGGCCGGACAATATGATCTTCTTCCTGGCCGGAGAAGCAGACCTGTCCGATTGGCCCCTTAATCCGGCCGAGAAGGTCTCCATCCGTAATACCGATGGTACTCCTCTCCATACCCTCAGAGAAGGCTTTCTGCCGCGTACCATCAGACGGCACAAGGATACCTACCAGCATCACATCCTCATGGGCGGTCCGGCGTATTCGCTCCACGACGACAGACGCATTCCGCTAAGTCTGCTTAATAATATCCTCGGAGGGCCGGGTATGAACTCCCGGCTCAATCTCTCACTGCGTGAAGAGCATGGCTATGTCTATAACGTAGAGAGCAATTACACGCCCTATTCCGATACGGGAGTCTTCAATATCTACCTCGGCTGCGCTCCCCGATATGCGGAAGCAGCCATGGAGCTTGTCAGAAAAGAGTTGCGCTATTTGATCGAACACCCTCTTTCTCCGATAGAACTGGAATCTGCCAAGCGACAGTTCAAAGGGCAGCTCATCGTGTCGGCTGACAATAAGGAGTCCACATTCCTTTCATTGGGCAAGAGTATGCTCCTCTATGGCAAATACGATCCCCTTTCGGATATTTTCCATCGTATCGATGCCATTACCTCCGATCGGCTCCGTGAGATTGCGGCCGAAGTGCTGAATCCTGACAGCATGCTTACACTGATTTATTGT","6.70","-3.06","46392","MDYQLYTLPSGLHVVYKPHAGEVTYAGFAIGVGTRHESSRHHGLAHLTEHMLFKGTSLRNSLQIIRRMEEVGAELNAFTEKESTYVYCIFPKAHFNRATNLLFDIVQHSRFPEEELTKEKTVVIDEIDSYRDNPSELIFDEFENILFRHHPLGHNILGTEASVSRITGQIGRNFLRRHYRPDNMIFFLAGEADLSDWPLNPAEKVSIRNTDGTPLHTLREGFLPRTIRRHKDTYQHHILMGGPAYSLHDDRRIPLSLLNNILGGPGMNSRLNLSLREEHGYVYNVESNYTPYSDTGVFNIYLGCAPRYAEAAMELVRKELRYLIEHPLSPIELESAKRQFKGQLIVSADNKESTFLSLGKSMLLYGKYDPLSDIFHRIDAITSDRLREIAAEVLNPDSMLTLIYC","103415 104629","Zinc protease requires divalent cations for activity. In Bacillus subtilis, this protein belongs to the peptidase family M16, also known as the insulinase family (gi: 1176567).TIGR ID: PG0088","hypothetical zinc protease","Cytoplasm, Extracellular","Numerous hits with gapped blast to putative zinc proteases: i.e., residues 6-403 of PG0077 are 33% similar to residues 5-401 of YmxG, a hypothetical zinc protease from B. subtilis (gi: 1176567).This protein is similar to CT806, a predicted insulinase family/protease III, and to BT3308.","
InterPro
IPR007863
Domain
Peptidase M16, C-terminal
PF05193\"[165-340]TPeptidase_M16_C
InterPro
IPR011765
Domain
Peptidase M16, N-terminal
PF00675\"[13-160]TPeptidase_M16
noIPR
unintegrated
unintegrated
G3DSA:3.30.830.10\"[2-197]T\"[222-394]TG3DSA:3.30.830.10
PTHR11851\"[28-397]TPTHR11851
SSF63411\"[1-191]T\"[216-404]TSSF63411


","BeTs to 10 clades of COG0612COG name: Predicted Zn-dependent peptidasesFunctional Class: RThe phylogenetic pattern of COG0612 is ----YQvCEBrhUJ--o---xNumber of proteins in this genome belonging to this COG is 2","***** IPB001431 (Insulinase family (Peptidase family M16)) with a combined E-value of 1.3e-15. IPB001431A 43-56 IPB001431B 76-90 IPB001431C 178-190","Residues 231-403 are 32% similar to a (PROTEASE PROCESSING PROTEIN PEPTIDASE PRECURSOR) protein domain (PD001445) which is seen in O86835_STRCO.Residues 6-190 are 37% similar to a (PROTEASE PROTEIN METALLOPROTEASE) protein domain (PD000718) which is seen in YMXG_BACSU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Mon Dec 22 10:33:45 2003","Wed Mar 29 16:09:36 MST 2000","Mon Dec 22 10:33:45 2003","Wed Dec 20 16:00:44 MST 2000","Mon May 21 16:49:10 MDT 2001","Mon May 21 16:49:10 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Wed Dec 20 16:26:09 MST 2000","Mon May 21 16:49:10 MDT 2001","-46% similar to PDB:1HR6 YEAST MITOCHONDRIAL PROCESSING PEPTIDASE (E_value = 2.1E_29);-46% similar to PDB:1HR7 YEAST MITOCHONDRIAL PROCESSING PEPTIDASE BETA-E73Q MUTANT (E_value = 4.7E_29);-46% similar to PDB:1HR8 YEAST MITOCHONDRIAL PROCESSING PEPTIDASE BETA-E73Q MUTANT COMPLEXED WITH CYTOCHROME C OXIDASE IV SIGNAL PEPTIDE (E_value = 4.7E_29);-46% similar to PDB:1HR9 YEAST MITOCHONDRIAL PROCESSING PEPTIDASE BETA-E73Q MUTANT COMPLEXED WITH MALATE DEHYDROGENASE SIGNAL PEPTIDE (E_value = 4.7E_29);-44% similar to PDB:1BCC CYTOCHROME BC1 COMPLEX FROM CHICKEN (E_value = 9.1E_25);","","","Residues 13 to 160 (E-value = 1.7e-30) place PG0077 in the Peptidase_M16 family which is described as Insulinase (Peptidase family M16) (PF00675)Residues 165 to 340 (E-value = 1.3e-32) place PG0077 in the Peptidase_M16_C family which is described as Peptidase M16 inactive domain (PF05193)","Mon Dec 22 10:33:45 2003","34539958","","","Chen,N.Y., Jiang,S.Q., Klein,D.A. and Paulus,H. 1993. Organization and nucleotide sequence of the Bacillus subtilis diaminopimelate operon, a cluster of genes encoding the first three enzymes of diaminopimelate synthesis and dipicolinate synthase. J. Biol. Chem. 268 (13): 9448-9465. PubMed: 8098035.","","Fri Apr 7 10:37:11 MDT 2000","1","","","PG0088" "PG0078","104781","105065","285","TTGATGCAAACTCATCTTAACGAGCCCTTTGCAAAAAGAGAAGGTTATCAAGAAGTATCTTTTCGGTATCGTTTTTGCTCACCTATAGAGCGTGTCGCACAAGTCATGGAGGAGAGAGGTATTCATATCTATAACGACACTGAAAAACAGTCAATTGACAATGAAATCTCCAGGAAAATGCTGTGCGACAGTCTTATCTATCGGTTTAACAGCTCGCACGGAATCTCCCACTCCCCGAACCTGCCATCCGACACAGAGCTGATGGCATCTTCCATCAATAGACCA","6.50","-1.14","11076","LMQTHLNEPFAKREGYQEVSFRYRFCSPIERVAQVMEERGIHIYNDTEKQSIDNEISRKMLCDSLIYRFNSSHGISHSPNLPSDTELMASSINRP","104781 105065","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm, Periplasm","No significant hit in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Feb 6 15:29:10 MST 2001","Tue Feb 6 15:29:10 MST 2001","Tue Feb 6 15:16:44 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","PG0078 is paralogous to PG1250, a hypothetical: residues 6-95 are 74% similar to PG1250.","Tue Feb 6 15:26:04 MST 2001","Wed Mar 28 15:46:07 MST 2001","-66% similar to PDB:1DMW CRYSTAL STRUCTURE OF DOUBLE TRUNCATED HUMAN PHENYLALANINE HYDROXYLASE WITH BOUND 7,8-DIHYDRO-L-BIOPTERIN (E_value = );-66% similar to PDB:1J8T Catalytic Domain of Human Phenylalanine Hydroxylase Fe(II) (E_value = );-66% similar to PDB:1J8U Catalytic Domain of Human Phenylalanine Hydroxylase Fe(II) in Complex with Tetrahydrobiopterin (E_value = );-66% similar to PDB:1KW0 Catalytic Domain of Human Phenylalanine Hydroxylase (Fe(II)) in Complex with Tetrahydrobiopterin and Thienylalanine (E_value = );-66% similar to PDB:1LRM Crystal structure of binary complex of the catalytic domain of human phenylalanine hydroxylase with dihydrobiopterin (BH2) (E_value = );","","","No significant hits to the Pfam 11.0 database","Wed Mar 28 15:46:07 MST 2001","","","","","","","1","","","" "PG0079","105664","106140","477","ATGAAAAAGATTCTTGAAGTAACGGGTTTGAAAGAGCAGCAAGTTGCTCCCGTAGTGAAAGGTTTGTCCGGTTTGTTGGCCGACCTCCAAGTGTATTACTCCAACCTTCGCGGGTTCCACTGGAATATCCGTGGCGCAGAGTTCTTCGTTCTGCATGAGCAGTACGAGAAGATGTACGATGACCTCGCAGGGAAAATCGACGAGGTAGCTGAGCGTATCCTCCAACTTGGTGGCAAGCCTGAGAACCGCTTCAGCGAGTACCTGAAAGTAGCAGAAGTGAAGGAAGAGCACGAACTCGTTTGCGCTGCAAGTACGCTGAAGAATGTGACCGATACGCTGCAGATCATCATGGCGAAGGAGCGTGCCATCGCAGAAGTTGCCGGTGAGGCAGGCGATGAGGTAACGGTGGATTTGATGATCGGTTTCCTCTCCGAGCAAGAGAAGCTCGTTTGGATGCTGTCTGCCTACGCTGCCAAG","4.80","-7.32","17849","MKKILEVTGLKEQQVAPVVKGLSGLLADLQVYYSNLRGFHWNIRGAEFFVLHEQYEKMYDDLAGKIDEVAERILQLGGKPENRFSEYLKVAEVKEEHELVCAASTLKNVTDTLQIIMAKERAIAEVAGEAGDEVTVDLMIGFLSEQEKLVWMLSAYAAK","105664 106140","TIGR ID: PG0090","DNA-binding stress protein (Dps family)","Cytoplasm","PG0079 is identical to the previously sequenced dbj|BAA76886.1| in GenBANK, a predicted Dps gene. Several hits to other Dps family sequences, e.g. residues 9-156 are 47% similar to gb|AAF93316.1| from V. cholerae. ","
InterPro
IPR002177
Family
DNA-binding protein Dps
PD149803\"[31-95]TDPS
PR01346\"[40-56]T\"[64-80]T\"[135-153]THELNAPAPROT
PIRSF005900\"[8-158]TDps
PS00818\"[40-56]TDPS_1
PS00819\"[66-80]TDPS_2
InterPro
IPR008331
Family
Ferritin and Dps
PF00210\"[15-156]TFerritin
InterPro
IPR009078
Family
Ferritin/ribonucleotide reductase-like
SSF47240\"[1-156]TFerritin/RR_like
InterPro
IPR012347
Family
Ferritin-related
G3DSA:1.20.1260.10\"[2-157]TFerritin_rel


","BeTs to 7 clades of COG0783COG name: Starvation-inducible DNA-binding protein DpsFunctional Class: LThe phylogenetic pattern of COG0783 is -------ceB-huj--ol--xNumber of proteins in this genome belonging to this COG is 1","***** IPB002177 (Dps protein family) with a combined E-value of 3.9e-46. IPB002177A 22-62 IPB002177B 63-77 IPB002177C 132-157","Residues 22-155 are 44% similar to a (PROTEIN DNA-BINDING DNA HEME) protein domain (PD149803) which is seen in YD49_HAEIN.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Feb 6 15:37:33 MST 2001","Tue Feb 6 15:37:33 MST 2001","Tue Mar 13 08:35:28 MST 2001","Tue Mar 13 08:35:28 MST 2001","Tue Mar 13 08:35:28 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 13 08:35:28 MST 2001","-63% similar to PDB:1JI5 Dlp-1 from bacillus anthracis (E_value = 1.4E_24);-57% similar to PDB:1JIG Dlp-2 from Bacillus anthracis (E_value = 8.8E_22);-57% similar to PDB:1N1Q Crystal structure of a Dps protein from Bacillus brevis (E_value = 1.5E_21);-58% similar to PDB:2D5K Crystal structure of Dps from Staphylococcus aureus (E_value = 3.3E_21);-58% similar to PDB:1JI4 NAP protein from helicobacter pylori (E_value = 9.1E_19);","","","Residues 15 to 158 (E-value = 1.4e-21) place PG0079 in the Ferritin family which is described as Ferritin-like domain (PF00210)","Tue Mar 13 08:35:28 MST 2001","34539959","","Nakayama,K. and Ratnayake,D.B. 1999. Molecular cloning and characterization of Porphyromonas gingivalis Dps-encoding gene. Published Only in DataBase. In press.","","Tue Mar 13 08:35:28 MST 2001","","1","","","PG0090" "PG0080","107490","106276","1215","ATGTTCTCAGACCTCTTTGCCATATGGAGGTACGAGCTGTGCAAGACGTTCAGAGACATGGGTATGGTCATCTTTTTCATCATAGTACCCCTCCTGTACCCACTCCTCTACAGCTATATATACAGCCACGAAGTGGTACGCGATGTGCCGGCCATGGTGGTGGACAGATCGAACTCGACACTGAGCCGCGAATACCTGCGAAGGGTAGATGCCACACCCGAAGTAAGCATCGTAGGACACTGCACCGATATGGAAGAGGCCAAGGAGCAAATCCGCAGGCGCAATGCCTATGGCATCATCTACGTTCCGGAGGATTTCTCCGAACATCTCAATACCGGCAGGAAGGCCCATATCTCTCTTTACTGCGATATGAGCGGATTGCTCTACTACAAAAGCCTGCTCATTGCCAATACACTGGTTTCGCTGGAGATGAACAAAGAGATCAAGATAGCGCGCAGCGTAGGAGCTACCGAGCGTCAGGGAGAGATCATCTCTTACCCCATCGACTATGAAGACGTGGCACTGTATAACCCGACCGTCGGTTTCGCTTCCTTCCTGCTACCTGCCGTACTCATCCTGATCATACAGCAGACGCTCCTGCTCGGCATAGGACTCTCGGCCGGTACGGCGCGTGAGAGGAATAAGTTTCACGACCTCGTACCTACCGATATCAGCCACTACTCCGGCGCACTCCGTATCGTCTTTGGCAAGGGGCTGGCCTATCTGACCATCTACGTGCCGGTACTATGCTACACGCTGGTCATCGTACCACGCATGTTCGGCTTTATCCAGCTGGCAGAAGCCATGGATCTGATTCTCTTTGCCCTGCCCTATCTGCTGGCTTGTATCTTCTTCGCCATGTCGCTCTCTGTCGTGGTACGTCATCGGGAAAGCTGTATGATGATCTTCGTCTTTACTTCCGTACCGCTCCTTTTTATCTCCGGAGTGTCGTGGCCCGGGGCATCCATACCGGAGGGTTGGCGCATTGTCTCTCATCTCTTCCCATCCACATTCGGCATCAATGGATACATCAAAATCAAGTCCATGGGGGCCAATCTGCGAGAGGTCAATAGCGAGTACATGGCTCTTTGGCTACACACGATCCTCTACTTCCTGACTACCTGCGCCATCTACTACCGTCAGGTACGTAAGAACCGTCGCCACATTCGCGAAGCCGACTCTCTCATTGCACAAGGCAACAAAGAAGTCCTCGAA","7.70","3.09","46199","MFSDLFAIWRYELCKTFRDMGMVIFFIIVPLLYPLLYSYIYSHEVVRDVPAMVVDRSNSTLSREYLRRVDATPEVSIVGHCTDMEEAKEQIRRRNAYGIIYVPEDFSEHLNTGRKAHISLYCDMSGLLYYKSLLIANTLVSLEMNKEIKIARSVGATERQGEIISYPIDYEDVALYNPTVGFASFLLPAVLILIIQQTLLLGIGLSAGTARERNKFHDLVPTDISHYSGALRIVFGKGLAYLTIYVPVLCYTLVIVPRMFGFIQLAEAMDLILFALPYLLACIFFAMSLSVVVRHRESCMMIFVFTSVPLLFISGVSWPGASIPEGWRIVSHLFPSTFGINGYIKIKSMGANLREVNSEYMALWLHTILYFLTTCAIYYRQVRKNRRHIREADSLIAQGNKEVLE","107547 106276","TIGR ID: PG0091","conserved hypothetical protein","Inner membrane, Cytoplasm","Several hits in gapped BLAST to conserved hypothetical proteins, e.g. residues 41-383 are 28% similar to (AE004761) from P.aeruginosa, residues 5-370 are 26% similar to (AE004238) conserved hypothetical protein Vibrio cholerae.This sequence is similar to BT3902.","
InterPro
IPR013525
Domain
ABC-2 type transporter
PF01061\"[128-348]TABC2_membrane


","BeTs to 6 clades of COG0842COG name: Predicted integral membrane proteinFunctional Class: SThe phylogenetic pattern of COG0842 is A-TK--VcEBR-UJ-------Number of proteins in this genome belonging to this COG is 2","***** IPB000412 (ABC 2 transport system integral membrane protein) with a combined E-value of 8.2e-07. IPB000412 309-344","Residues 44-372 are 23% similar to a (PROTEIN CONSERVED INTEGRAL MEMBRANE PUTATIVE) protein domain (PD041787) which is seen in Q9ZJD3_BBBBB.","","Tue Jun 12 16:54:11 MDT 2001","","Tue Jun 12 16:54:15 MDT 2001","Tue Jun 12 16:54:15 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Tue Jun 12 16:54:15 MDT 2001","Tue Jun 12 16:54:15 MDT 2001","","","Tue Feb 6 15:44:38 MST 2001","Sat Jan 3 10:05:40 2004","Wed Mar 28 15:49:39 MST 2001","Sat Jan 3 10:05:40 2004","Sat Jan 3 10:05:40 2004","yes","Fri Feb 20 15:41:32 MST 1998","Residues 5-372 share 22% similarity with PG0081, a conserved hypothetical protein.","Tue Jun 12 16:57:13 MDT 2001","Wed Mar 28 15:49:39 MST 2001","-44% similar to PDB:1EPW CRYSTAL STRUCTURE OF CLOSTRIDIUM NEUROTOXIN TYPE B (E_value = );-44% similar to PDB:1F31 CRYSTAL STRUCTURE OF CLOSTRIDIUM BOTULINUM NEUROTOXIN B COMPLEXED WITH A TRISACCHARIDE (E_value = );-44% similar to PDB:1G9A CRYSTAL STRUCTURE OF CLOSTRIDIUM BOTULINUM NEUROTOXIN B COMPLEXED WITH AN INHIBITOR (EXPERIMENT 3) (E_value = );-44% similar to PDB:1G9B CRYSTAL STRUCTURE OF CLOSTRIDIUM BOTULINUM NEUROTOXIN B COMPLEXED WITH AN INHIBITOR (EXPERIMENT 1) (E_value = );-44% similar to PDB:1G9C CRYSTAL STRUCTURE OF CLOSTRIDIUM BOTULINUM NEUROTOXIN B COMPLEXED WITH AN INHIBITOR (EXPERIMENT 4) (E_value = );","","","No significant hits to the Pfam 11.0 database","Wed Mar 28 15:49:39 MST 2001","34539960","","","","","","1","","","PG0091" "PG0081","108688","107552","1137","ATGCGTAGAGAGGTGCGACAACTGACGAGTCGCGTCCTCTTCCTCTTCTGCATGGTGATAGCTCCTGTCTTTTGCTGTCTCTTCTTCCCCTCCATCATGGATATGGGGTTGCCGCAGAACCTGCCTGCGGGTATTGTGGATCTCGATCGTACACAGACGTCGCGCACCATAGCACGCCACCTCAATTCGATGGAGCAAACCCAAATCGTCAAACAGTTCGAAAGCGTGCGTGAGGCTCGGCTGGCAGTACAGCGAGGCGAGATATACGGTTACTACTATATACCCGAGGGAATGACACGGGATGCCTACGCACAGAAGCAGCCCAAGCTCTCCTTCTATACCAACTATGCCTATATGGTGGGTGGCTCGCTCCTCTTCAGGGACAACAAGATGATCAGCGAACTGGTAGCCGGTGCAGCCGCTCGTTCGCAACTTTATGCCCGAGGAGCCACCGAAAGCCAGGCCATGGACTGGCTACAGCCGATCGTTATCGACACGCACCCCATAGGCAATCCGTGGCTCAACTACTCCATCTACCTGAGCAATATCATGATACCCGGCGTACTGGGTCTGCTCATCTTCATGGTCACAGTGTGTAGCATAGCCATGGAGATCAAGAGATCGACAGCTCGAGAATGGATGGAGACGGCCGGCGGCAGTATGTCCATCGCCCTTTTGGGCAAGCTGCTACCCCAAACCGTGGCATTCATGCTCATCGGCACCTTTATAGACGTATATCTGTATGGCTTCCTCTCCTACCCGATCAATGGCGGATTCTTGCCGATGCTGATAGTCATGTATCTCTTCATCCTCGCTTGTCAGGGTTTTGGCGTACTGATGTTCGTCACCCTCCCGACGATGAGATTGGGACTTAGCTTTGCTTCCCTATGGGGCATTATCTCTTTCTCCATATGCGGAGCCTCGTTTCCCGCTCTCGGTATGCCGACTGTCATGCAGTCCGCCAGCGCGCTATTTCCGTTGAGGCACTACTATCTCTCTTATGTGACAAGTGCCCTTGATGGATTTTCCCTGAAATATGCTTGGACCAATATCCTCGCTTTCGTCATCTTCGCATTGCTGCCGCTACTGCTCCTTCGCCGGCTCAAGCACATACTCCTAACCTACAAATACGTCTCT","9.80","9.67","42624","MRREVRQLTSRVLFLFCMVIAPVFCCLFFPSIMDMGLPQNLPAGIVDLDRTQTSRTIARHLNSMEQTQIVKQFESVREARLAVQRGEIYGYYYIPEGMTRDAYAQKQPKLSFYTNYAYMVGGSLLFRDNKMISELVAGAAARSQLYARGATESQAMDWLQPIVIDTHPIGNPWLNYSIYLSNIMIPGVLGLLIFMVTVCSIAMEIKRSTAREWMETAGGSMSIALLGKLLPQTVAFMLIGTFIDVYLYGFLSYPINGGFLPMLIVMYLFILACQGFGVLMFVTLPTMRLGLSFASLWGIISFSICGASFPALGMPTVMQSASALFPLRHYYLSYVTSALDGFSLKYAWTNILAFVIFALLPLLLLRRLKHILLTYKYVS","108730 107552","TIGR ID: PG0092","conserved hypothetical protein","Inner membrane, Cytoplasm","A few hits in gapped BLAST to conserved hypothetical proteins, e.g. residues 17-330 are 26% similar to gb|AAF94762.1 from V. cholerae.This sequence is similar to BT3903.","
InterPro
IPR013525
Domain
ABC-2 type transporter
PF01061\"[134-339]TABC2_membrane


","BeTs to 7 clades of COG0842COG name: Predicted integral membrane proteinFunctional Class: SThe phylogenetic pattern of COG0842 is A-TK--VcEBR-UJ-------Number of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","Residues 8-338 are 21% similar to a (PROTEIN CONSERVED INTEGRAL MEMBRANE PUTATIVE) protein domain (PD041787) which is seen in O26021_HELPY.","","Tue Jun 12 16:54:29 MDT 2001","","Tue Jun 12 16:54:29 MDT 2001","Tue Jun 12 16:54:29 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Tue Jun 12 16:54:29 MDT 2001","Tue Jun 12 16:54:29 MDT 2001","","","Wed Feb 7 15:25:54 MST 2001","Sat Jan 3 10:07:27 2004","Mon Apr 2 16:21:36 MDT 2001","","Sat Jan 3 10:07:27 2004","yes","Fri Feb 20 15:41:32 MST 1998","Residues 19-363 share 22% similarity with PG0080, a conserved hypothetical protein.","Tue Jun 12 16:59:05 MDT 2001","Mon Apr 2 16:21:36 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Apr 2 16:21:36 MDT 2001","34539961","","","","","","1","","","PG0092" "PG0082","109728","108736","993","ATGACGGACAACAAACAACGTAATATCGTATTCCCGGCGTTTCTCCTCTTGCTGGGAGTCATCGCAGTGGTGACGATCGTTGGTTTTTTCATGCTCAGACCGGCCGAGGAGATTATCCAAGGACAGATAGAAGTGACCGAATACCGAGTGTCCAGCAAAGTGCCCGGGCGCATCAAGGAACTTAGGGTATCCGAGGGACAGCAGGTGCAGGCCGGCGATACCCTCGCTGTCATCGAAGCCCCCGACGTAGCGGCTAAGATGGAGCAGGCAAAGGCTGCCGAAGCAGCTGCACAGGCTCAGAACGCCAAGGCTCTCAAAGGAGCACGCAGCGAACAGATACAGGCAGCCTATGAGATGTGGCAGAAAGCTCAGGCCGGCGTAGCCATAGCGACCAAGACACACCAGCGCGTGCAGAACCTCTATGACCAGGGAGTGGTACCGGCTCAGAAGTTGGACGAAGCCACTGCCCAGCGCGATGCGGCCATCGCTACGCAAAAAGCGGCCGAAGCCCAGTACAATATGGCTCGCAACGGTGCCGAACGCGAAGACAAGCTGGCAGCTTCTGCCCTCGTCGATAGAGCGAGAGGAGCCGTCGCCGAGGTGGAGTCGTACATCAACGAAACCTACCTCATCGCCCCACGGGCAGGCGAAGTGTCGGAGATATTCCCCAAAGCCGGCGAACTCGTAGGTACCGGCGCACCTATCATGAATATCGCCGAGATGGGCGATATGTGGGCCAGCTTTGCCGTTCGTGAGGATTTCCTCAGCAGCATGACCATGGGAGCCGTTCTGGAGACTGTGGTGCCGGCTCTGAATGAAGAAAAAGTACGCTTCAAGATCACATTCATCAAGAACATGGGTACCTATGCTGCCTGGAAAGCGACCAAGACAACAGGGCAGTACGACCTGAAGACCTTCGAGGTAAAGGCCACCCTTGCGGATAAAGACAAGGCACAAAAGCTACGCCCGGGTATGTCCGTGATCATACGCAAG","8.90","1.27","36000","MTDNKQRNIVFPAFLLLLGVIAVVTIVGFFMLRPAEEIIQGQIEVTEYRVSSKVPGRIKELRVSEGQQVQAGDTLAVIEAPDVAAKMEQAKAAEAAAQAQNAKALKGARSEQIQAAYEMWQKAQAGVAIATKTHQRVQNLYDQGVVPAQKLDEATAQRDAAIATQKAAEAQYNMARNGAEREDKLAASALVDRARGAVAEVESYINETYLIAPRAGEVSEIFPKAGELVGTGAPIMNIAEMGDMWASFAVREDFLSSMTMGAVLETVVPALNEEKVRFKITFIKNMGTYAAWKATKTTGQYDLKTFEVKATLADKDKAQKLRPGMSVIIRK","109728 108736","Ross, et al.(2001) select PG0082 as one of fifteen vaccine candidate antigens, based on in vitro and in vivo laboratory studies of 120 candidates screened by bioinformatics techniques from the whole W50 genome. TIGR ID: PG0093","conserved hypothetical protein (36 kDa antigen)","Inner membrane, Periplasm, Cytoplasm","PG0082 is identical to the previously sequenced gb|AAD39494.1 in GenBANK, a predicted 36 kDa antigen. Several hits in gapped BLAST to conserved hypothetical proteins, e.g. residues 15-330 are 38% similar to gb|AAF94761.1| from V.cholerae.This sequence is similar to BT3904.","
InterPro
IPR000089
Domain
Biotin/lipoyl attachment
PF00364\"[50-78]TBiotin_lipoyl
InterPro
IPR011053
Domain
Single hybrid motif
SSF51230\"[33-120]THybrid_motif
noIPR
unintegrated
unintegrated
SSF111369\"[163-330]TSSF111369


","BeTs to 5 clades of COG0845COG name: Membrane permeases, predicted cation efflux pumpsFunctional Class: RThe phylogenetic pattern of COG0845 is -----QvCEB-hUJ--ol--xNumber of proteins in this genome belonging to this COG is 6","***** IPB002215 (HlyD family secretion protein) with a combined E-value of 2.6e-07. IPB002215A 44-80 IPB002215B 209-243","Residues 139-329 are 36% similar to a (ANTIGEN TRANSMEMBRANE PUTATIVE) protein domain (PD107678) which is seen in Q9ZJD1_BBBBB.Residues 41-138 are 32% similar to a (PROTEIN MEMBRANE TRANSMEMBRANE INNER) protein domain (PD001100) which is seen in AN36_HELPY.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Wed Nov 7 14:12:11 2001","Tue Feb 6 15:54:47 MST 2001","Sat Jan 3 10:09:18 2004","Wed Nov 7 14:10:06 2001","Wed Nov 7 14:10:06 2001","Wed Nov 7 14:10:06 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Nov 7 14:10:06 2001","-57% similar to PDB:1O78 BIOTIN CARBOXYL CARRIER DOMAIN OF TRANSCARBOXYLASE (1.3S) [10-48] DELETION MUTANT (E_value = );-64% similar to PDB:2D5D Structure of Biotin Carboxyl Carrier Protein (74Val start) from Pyrococcus horikoshi OT3 Ligand Free Form II (E_value = );-64% similar to PDB:2EVB Structure of Biotin Carboxyl Carrier Protein (74Val start) from Pyrococcus horikoshi OT3 Ligand Free Form I (E_value = );-48% similar to PDB:1LAB THREE-DIMENSIONAL STRUCTURE OF THE LIPOYL DOMAIN FROM BACILLUS STEAROTHERMOPHILUS PYRUVATE DEHYDROGENASE MULTIENZYME COMPLEX (E_value = );-48% similar to PDB:1LAC THREE-DIMENSIONAL STRUCTURE OF THE LIPOYL DOMAIN FROM BACILLUS STEAROTHERMOPHILUS PYRUVATE DEHYDROGENASE MULTIENZYME COMPLEX (E_value = );","","","No significant hits to the Pfam 11.0 database","Wed Nov 7 14:10:06 2001","34539962","","Ross BC, Czajkowski L, Hocking D, Margetts M, Webb E, Rothel L, Patterson M, Agius C, Camuglia S, Reynolds E, Littlejohn T, Gaeta B, Ng A, Kuczek ES, Mattick JS, Gearing D, Barr IG, Identification of vaccine candidate antigens from a genomic analysis of Porphyromonas gingivalis, Vaccine 2001 Jul 20;19(30): 4135-42, PMID: 11457538.","","Wed Nov 7 14:12:11 2001","","1","","","PG0093" "PG0083","111283","109781","1503","ATGAAACGATTGATTATCGCAGGCGTTTTGGCATGCGCCTTGTGGCCGGTATATGGACAGAGAGTACTGAGCGTGAACGAATGCCGGCGCCTTGCCCTCGAACACAACAGAGACTTGGCCATAAGCCGCGAAAAGATAAATGCGGCCACCAGTACTCGCAAAGCCGCTTTCACCAGCTACCTGCCCGAGCTCTCGGCCACCGGTACTTACCTGCACAACCAGAAGGAAGTATCGCTATTGAGCGACGAGCAGAAGCACAAGCTCCAGAATCTCGGCACCGACCTTGTCACAGCCATAGGGCAGAATCCCTACATCACGACGGCTATTCAGTCCATCCTTGCCCAGCATCCCGATTTGGCTCCCCTTATCGGATCCATGATGCCGCAGATAGCCACCCAGACGAGTCAGGGGCTTAACGCCTTCGGTACACACCTCGTCGATGCCGTGCGCACCGATACCCGCAATGTCTATGCCGGTGTGCTGACCCTGACCCAACCGCTGTATGTAGGCGGCAAGATATATGCCTACAACCGCATCACGCGCTATGCCGAAGAGATAGCACACTGGCAGCACAAGACCGGACAGCAGGATGTGATCCTCGCTACCGACCAGGCCTATTGGCAAGTGGTTTCTTTGGCCAATAAGCACCGCCTTGCCGAGAGCTATCTGGAGTTGCTGACGAAGCTCGACAACGATGTCCAGAAGCTCATCAAGGAGGGATTGGCTACCCGTGCCGACGGTCTCAACGTATCGGTAAAGGTGAACGAAGCGGAGATGACGCTCGCTAAGGTAGAGGATGGGCTTAGCCTCTCGCGCATGCTTCTGTGCCAAACGATAGGACTGCCCCTCGACGAGACGATCACCCTCGCAGACGAAGGGCAAGAGGAGTTGCCGACGACCATCGTTCCGGCAGAGACCGACCTGCAATACACCCTCGACAACCGTCCCGAACTCAAGAGTCTCGCCCTGTTAGAGCAAATCTCCAAACAGAAGATACGGCTTACACGATCGGAATATCTGCCATCGCTCGCCTTCGTTGCCAACTATTTAGTGACTAATCCGTCCTCTTTCAATGGTTTCGAGAATAAATTCGGAGGTATGTGGAATGTGGGTGTGATGCTCAAAGTTCCTATCTGGCACTGGGGGCAGGGCACGCATAAGGTAAGAGCGGCCAAAGCCGAGGCACGCATCGCAGCCCAACAACTTGCCAAAGCACGCGAAAGCATCGAGCTACAGCTCTCCCAAAGCGTCCTGAAAGTACGGGAGGCAGACAAACGACTTGTCATGGCCACGAAGAACATGGAGAAAGCCGAAGAGAACCTGCGCTATGCCAATGTAGGTTTCCGCGAAGGCGTAATAACGGCCTCCAACGTACTGGAAGCTCAGACGGCATGGTTGTCGGCCCGGTCTGCAAAGATCGATGCACAGATCGACGTGAAACTGACCGAACTGATGCTGCGCAAGGCTTCGGGACACCTCTCCCCGGAAGAAGTCGTTTCGGAA","7.70","2.55","55598","MKRLIIAGVLACALWPVYGQRVLSVNECRRLALEHNRDLAISREKINAATSTRKAAFTSYLPELSATGTYLHNQKEVSLLSDEQKHKLQNLGTDLVTAIGQNPYITTAIQSILAQHPDLAPLIGSMMPQIATQTSQGLNAFGTHLVDAVRTDTRNVYAGVLTLTQPLYVGGKIYAYNRITRYAEEIAHWQHKTGQQDVILATDQAYWQVVSLANKHRLAESYLELLTKLDNDVQKLIKEGLATRADGLNVSVKVNEAEMTLAKVEDGLSLSRMLLCQTIGLPLDETITLADEGQEELPTTIVPAETDLQYTLDNRPELKSLALLEQISKQKIRLTRSEYLPSLAFVANYLVTNPSSFNGFENKFGGMWNVGVMLKVPIWHWGQGTHKVRAAKAEARIAAQQLAKARESIELQLSQSVLKVREADKRLVMATKNMEKAEENLRYANVGFREGVITASNVLEAQTAWLSARSAKIDAQIDVKLTELMLRKASGHLSPEEVVSE","111283 109781","TIGR ID: PG0094","conserved hypothetical protein (possible alkaline secretion protease)","Outer membrane, Cytoplasm","Several weak hits in gapped BLAST to hypothetical proteins, possible lipases, alkaline proteases: residues 22-462 are 39% similar to jhp1382 from Helicobacter pylori (AE001560). Residues 98-469 are 38% similar to APRF_PSEAE, an alkaline secretion protease.This sequence is similar to BT3905.","
InterPro
IPR003423
Family
Outer membrane efflux protein
PF02321\"[105-280]T\"[305-491]TOEP
noIPR
unintegrated
unintegrated
SSF56954\"[23-496]TSSF56954


","BeTs to 4 clades of COG1538COG name: Putative outer membrane proteinFunctional Class: SThe phylogenetic pattern of COG1538 is -----Q-c----uj------xNumber of proteins in this genome belonging to this COG is 4","No significant hit to the Blocks database.","Residues 23-462 are 22% similar to a (PROTEIN LIPASE-LIKE PUTATIVE) protein domain (PD143779) which is seen in Q9ZJD0_BBBBB.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Jan 18 15:23:58 MST 2001","Sat Jan 3 10:11:03 2004","Mon Apr 2 16:31:28 MDT 2001","","Mon Apr 2 16:31:28 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG0083 show weak similarity to PG1455, PG0490, PG0611, PG0259, all of which are weakly related to APRF_PSEAE, an alkaline protease secretion protein. See BLAST Summary.","Mon Apr 2 16:31:28 MDT 2001","Mon Apr 2 16:31:28 MDT 2001","-42% similar to PDB:2B78 A putative sam-dependent methyltransferase from Streptococcus mutans (E_value = );-42% similar to PDB:1A2Q SUBTILISIN BPN' MUTANT 7186 (E_value = );-42% similar to PDB:1LW6 Crystal Structure of the Complex of Subtilisin BPN' with Chymotrypsin Inhibitor 2 at 1.5 Angstrom Resolution (E_value = );-42% similar to PDB:1S02 EFFECTS OF ENGINEERED SALT BRIDGES ON THE STABILITY OF SUBTILISIN BPN' (E_value = );-42% similar to PDB:1SBN REFINED CRYSTAL STRUCTURES OF SUBTILISIN NOVO IN COMPLEX WITH WILD-TYPE AND TWO MUTANT EGLINS. COMPARISON WITH OTHER SERINE PROTEINASE INHIBITOR COMPLEXES (E_value = );","","","Residues 305 to 491 (E-value = 1.5e-25) place PG0083 in the OEP family which is described as Outer membrane efflux protein (PF02321)","Mon Apr 2 16:31:28 MDT 2001","34539963","","","","","","1","","","PG0094" "PG0084","114853","112181","2673","ATGGCAAAGCCTGTGGTAGAAACGCCTTTGATGCGCCAATACTTTCAGATCAAGCAAAAACACCCTGATGCTATCCTGCTCTTCAGGGTGGGAGATTTCTACGAAACATTTTCGGAGGATGCCATCGTGGCTTCCGAGATCCTGGGGATAACGCTGACACGGCGTGCCAACGGAGCTGCCCAGTTTGTCGAATTGGCCGGCTTTCCTCATCATGCGTTGGATACCTATCTGCCCAAATTGGTACGAGCCGGCAAGCGCGTGGCCATATGCGACCAACTGGAAGATCCGAAAAAGACCAAAACGCTGGTCAAACGCGGTATTACCGAACTGGTCACTCCCGGCGTATCGACCAACGACAATGTACTCTCTCATAAGGAGAACAATTTCCTTGCAGCCGTCTCCTGCGGCAAAGAGGTCTTCGGTATTTCTCTTCTGGACATATCCACCGGCGAATTTATGGCCGGACAAGGCAATGCCGACTATGTGGAAAAACTCCTGACCAACTACCGCCCGAAGGAAATCCTCGTGGAACGGTCGGAGCGGTCTCGCTTCAACGACCTCTTCCACTGGAGCGGATTTATCTTCGATATGGAAGACTGGGCTTTCTCCTCGGAGAACAATCGACTACGCGTACTCAAGCACTTTGACCTGAAAAGCCTCAAAGGTTTCGGGCTGGAAGAGCTTTCGATGGCAGTAACGGCAGCCGGAGCCGTACTGAACTATCTCGATCTGACACAGCACCATCAGCTACAACACATCACATCGCTGAGCCGACTGGATGAAAACCGGTATGTACGCTTGGATAAGTTCACCGTCCGAAGCCTTGAATTGCTTAGCCCGATGAACGAGGGAGGCAAGAGTCTGCTCGACATCATCGACCATACGATAACGCCTATGGGAGCAAGGCGTATACGACAGTGGATCGTATTCCCACTCAAGGACCCTGCACGCATACAAGCCCGACAGCGAGTGGTGGAGTTTTTCTTCCGACATCCTGAAGAGCGAGCCATCATTGCCGAACATCTGACAGAGATAGGCGACTTGGAACGTTTGGTGACGAAAGGCGCCATGGGACGCATTTCTCCGCGAGAAATGGTACAACTACGTGTCGCCCTGCAAGCACTCGAACCGATCAAGGAAGTATGTACCCATGCAGACGAAGAGAATCTGCGCACACTGGGGGGAAAGTTGGAGCTGTGCAAGGAACTACGCGACAAGATATTGCGTGAGGTGATGCCCGATGCTCCGGCCGCTCTCGGTCGCGGCCCCGTCATCGCACATGGCGTCGATGCCACGCTCGACGAACTGCGTGCACTGGCATACAGCGGCAAAGACTATCTGATCAAGCTACAGCAGCAGGAGATAGAGCGAACGGGAATACCCAGTCTCAAAGTAGCTTATAACAATGTGTTCGGCTACTATATCGAAGTCCGCAACACGCACAAGGACAAGGTACCGGCCGAGTGGATCCGCAAGCAAACACTCGTCAGTGCCGAACGGTATATTACGGAAGAGCTGAAAGAGTACGAAGCAAAAATACTCGGAGCCGAAGAGAAAATAGCAGCCCTCGAAGGACAGCTGTACGCCTTGCTTGTAGCCGAACTGCAGCGATACGTGGCACCTCTCCAACAGGACAGTCAAGCGGTGGCTTCTCTGGATTGTCTCCTCTCCTTTGCCGAGTCGGCACGCCGCTACAGATTTATCTGCCCTGTAGTGGACGAGAGCTTTACCATCGACATCAAAGCGGGCCGCCACCCCGTCATCGAACAGCAGCTACCGGCCGATGAACCTTATATCGCCAACGATATTTATTTGGACACAGACCGCCAGCAAGTCATCATCGTCACCGGCCCCAATATGAGCGGCAAGTCCGCCCTGCTCAGGCAGACGGCCCTTATCTCTCTGATGGCACAGATAGGCTCTTTCGTACCGGCCGAAAGTGCACGTATCGGCATGGTGGACAGCATTTTCACGCGGGTGGGAGCTTCGGACAACATCTCCATGGGCGAATCCACTTTCATGGTCGAAATGCAAGAAGCTTCCAATATTCTGAACAATCTCACGCCACGCAGTCTGGTACTGTTCGACGAATTAGGACGGGGTACCAGCACCTATGACGGCATCTCCATAGCCTGGTCTATCGTGGAGTACATCCATGACAATCCCAAGGCACACCCCCGGACTCTCTTCGCCACACATTATCACGAACTGAACGAGCTGGAAGGGCAACTCGATCGGGTACACAACTTCAATGTATCGGCTCGCGAAGTGGACGGCAAGATGCTCTTCCTTCGCAAATTGGAGCCGGGCGGCAGTGCACACAGCTTCGGTATTCAAGTAGCCCGTCTCGGCGGTATGCCACACCATATCGTACAGCGAGCCACAGACATCCTGCATCGTCTCGAACAAGAAAGGGAGAAAATAGAGGAAGAGGAGCCAAAAACCAAAGACACCAAACGAGGCCCTTCCGAAAAGGTGAAAAATGCGTCGCCCACGCTTCCTCGGGACGAAAAAGGCAGGAGCATCGACGGTTATCAGCTTAGCTTCTTTCAGCTCGATGATCCCGTCTTGTCCCAAATCAGAGAGGAGATCCTCGATCTGAACATCGACAACCTCACCCCCTTGGAGGCCCTCAATAAGCTGAACGACATCAAACGAATCCTCCGCGGATAC","6.20","-11.14","100676","MAKPVVETPLMRQYFQIKQKHPDAILLFRVGDFYETFSEDAIVASEILGITLTRRANGAAQFVELAGFPHHALDTYLPKLVRAGKRVAICDQLEDPKKTKTLVKRGITELVTPGVSTNDNVLSHKENNFLAAVSCGKEVFGISLLDISTGEFMAGQGNADYVEKLLTNYRPKEILVERSERSRFNDLFHWSGFIFDMEDWAFSSENNRLRVLKHFDLKSLKGFGLEELSMAVTAAGAVLNYLDLTQHHQLQHITSLSRLDENRYVRLDKFTVRSLELLSPMNEGGKSLLDIIDHTITPMGARRIRQWIVFPLKDPARIQARQRVVEFFFRHPEERAIIAEHLTEIGDLERLVTKGAMGRISPREMVQLRVALQALEPIKEVCTHADEENLRTLGGKLELCKELRDKILREVMPDAPAALGRGPVIAHGVDATLDELRALAYSGKDYLIKLQQQEIERTGIPSLKVAYNNVFGYYIEVRNTHKDKVPAEWIRKQTLVSAERYITEELKEYEAKILGAEEKIAALEGQLYALLVAELQRYVAPLQQDSQAVASLDCLLSFAESARRYRFICPVVDESFTIDIKAGRHPVIEQQLPADEPYIANDIYLDTDRQQVIIVTGPNMSGKSALLRQTALISLMAQIGSFVPAESARIGMVDSIFTRVGASDNISMGESTFMVEMQEASNILNNLTPRSLVLFDELGRGTSTYDGISIAWSIVEYIHDNPKAHPRTLFATHYHELNELEGQLDRVHNFNVSAREVDGKMLFLRKLEPGGSAHSFGIQVARLGGMPHHIVQRATDILHRLEQEREKIEEEEPKTKDTKRGPSEKVKNASPTLPRDEKGRSIDGYQLSFFQLDDPVLSQIREEILDLNIDNLTPLEALNKLNDIKRILRGY","114853 112181","The MutS protein is responsible for repair of mismatched bases.It does this in part through an ATPase domain.TIGR ID: PG0095","DNA mismatch repair protein","Cytoplasm","Several hits in gapped BLAST to DNA mismatch repair proteins, e.g. residues 8-845 are 37% similar to the mutS enzyme from E.coli (embCAB43497.1).This protein is similar to CT792, a predicted mismatch repair protein, and to BT3121.","
InterPro
IPR000432
Domain
DNA mismatch repair protein MutS, C-terminal
PD001263\"[660-751]TMutS_C
PF00488\"[567-804]TMutS_V
SM00534\"[610-799]TMUTSac
PS00486\"[691-707]TDNA_MISMATCH_REPAIR_2
InterPro
IPR005748
Family
MutS 1 protein
TIGR01070\"[7-886]TmutS1
InterPro
IPR007695
Domain
DNA mismatch repair protein MutS, N-terminal
PF01624\"[8-120]TMutS_I
InterPro
IPR007696
Domain
MutS III
PF05192\"[262-564]TMutS_III
SM00533\"[283-591]TMUTSd
InterPro
IPR007860
Domain
MutS II
PF05188\"[128-254]TMutS_II
InterPro
IPR007861
Domain
MutS IV
PF05190\"[428-519]TMutS_IV
noIPR
unintegrated
unintegrated
G3DSA:1.10.1420.10\"[262-449]TG3DSA:1.10.1420.10
G3DSA:3.30.420.110\"[128-256]TG3DSA:3.30.420.110
G3DSA:3.40.1170.10\"[7-113]TG3DSA:3.40.1170.10
G3DSA:3.40.50.300\"[567-804]TG3DSA:3.40.50.300
PTHR11361\"[615-825]TPTHR11361
PTHR11361:SF34\"[615-825]TPTHR11361:SF34
SSF48334\"[268-566]TSSF48334
SSF52540\"[567-805]TSSF52540
SSF53150\"[114-267]TSSF53150
SSF55271\"[8-113]TSSF55271


","BeTs to 10 clades of COG0249COG name: MutS-like ATPases involved in mismatch repair, family 2Functional Class: LThe phylogenetic pattern of COG0249 is ----Yqvceb-h----olinxNumber of proteins in this genome belonging to this COG is 2","***** IPB000432 (DNA mismatch repair protein MutS family) with a combined E-value of 5e-80. IPB000432A 297-321 IPB000432B 614-645 IPB000432C 654-702 IPB000432D 728-738 IPB000432E 761-794","Residues 550-794 are 50% similar to a (PROTEIN DNA REPAIR ATP-BINDING DNA-BINDING MISMATCH MUTS) protein domain (PD001263) which is seen in MUTS_SYNY3.Residues 8-188 are 45% similar to a (REPAIR DNA PROTEIN MISMATCH) protein domain (PD136848) which is seen in MUTS_THEMA.Residues 230-547 are 35% similar to a (PROTEIN REPAIR DNA ATP-BINDING DNA-BINDING MISMATCH MUTS) protein domain (PD002590) which is seen in MUTS_THEMA.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Fri Dec 19 10:55:50 2003","Wed Mar 29 15:31:53 MST 2000","Tue Jul 17 14:39:11 2007","Wed Apr 4 11:34:26 MDT 2001","Wed Apr 4 11:34:26 MDT 2001","Wed Apr 4 11:34:26 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 291-796 are 21% similar to residues 24-528 of PG0350, a predicted MUS2 enzyme. Residues 340-738 are 23% similar to residues 37-395 of PG0954.","Wed Apr 4 11:34:26 MDT 2001","Tue Jul 17 14:39:11 2007","-60% similar to PDB:1E3M THE CRYSTAL STRUCTURE OF E. COLI MUTS BINDING TO DNA WITH A G:T MISMATCH (E_value = 1.8E_159);-60% similar to PDB:1OH5 THE CRYSTAL STRUCTURE OF E. COLI MUTS BINDING TO DNA WITH A C:A MISMATCH (E_value = 1.8E_159);-60% similar to PDB:1OH6 THE CRYSTAL STRUCTURE OF E. COLI MUTS BINDING TO DNA WITH AN A:A MISMATCH (E_value = 1.8E_159);-60% similar to PDB:1OH7 THE CRYSTAL STRUCTURE OF E. COLI MUTS BINDING TO DNA WITH A G:G MISMATCH (E_value = 1.8E_159);-60% similar to PDB:1OH8 THE CRYSTAL STRUCTURE OF E. COLI MUTS BINDING TO DNA WITH AN UNPAIRED THYMIDINE (E_value = 1.8E_159);","","","Residues 8 to 120 (E-value = 8.4e-59) place PG0084 in the MutS_I family which is described as MutS domain I (PF01624)Residues 128 to 254 (E-value = 4.9e-22) place PG0084 in the MutS_II family which is described as MutS domain II (PF05188)Residues 262 to 564 (E-value = 2.3e-107) place PG0084 in the MutS_III family which is described as MutS domain III (PF05192)Residues 428 to 519 (E-value = 8.4e-35) place PG0084 in the MutS_IV family which is described as MutS family domain IV (PF05190)Residues 567 to 804 (E-value = 9.1e-139) place PG0084 in the MutS_V family which is described as MutS domain V (PF00488)","Fri Dec 19 10:55:50 2003","34539964","","","LeClerc JE, Li B, Payne WL, Cebula TA. 1996. High mutation frequencies among Escherichia coli and Salmonella pathogens. Science 274(5290): 1208-11. PubMed: 8895473.Schlensog,V. and Bock,A. 1991. The Escherichia coli fdv gene probably encodes mutS and is located at minute 58.8 adjacent to the hyc-hyp gene cluster. J. Bacteriol. 173 (23): 7414-7415. PubMed: 1938937.","","Tue Jul 17 14:39:11 2007","1","","","PG0095" "PG0085","115838","115149","690","ATGAAACGCTGGGGCAATATGGCCCGCGTCTTCACCAAGTTAGGAAAGGAAATCACCATCGCTGCCAAAGAAGGCGGCCCCGACGTGGAGACCAATCCGCGTCTGCGTATCCTCGTGCAGACAGCCAAGAAGGAGAACATGCCGAAGGAGAACGTGGAACGCGCCATCAAAAAAGCTACCTCCAAAGACTATACGGACTACAAAGAGATGAACTATGAGGGCTATGGTCCTTACGGCATCGCGATCTTCGTGGAGACAGCTACGGACAATACCACACGTACCGTGGCCAATGTACGCAGCTACTTCAACAAACATGGCGGATCGCTCGGTACTTCCGGCAGCTTGGAATTCCTCTTCCAGCACAAATGCGTATTTCACATCGTCAAGAAAGACGATATGGATCTCGAAAGCCTTGAACTCGAACTGATAGACTACGGTGTGGACGAACTGGAAGAGGACGAAAACGAGATCATTCTCTACGGTGACTTTTCGGAGAACTCCAACATCCAGAAATATCTGGAAGATGCAGGCTATGAGATCGCTTCGGCCGAATTCGTCCGCATACCCAACGATACGAAAGAGGTAACCGCCGAGCAGCGCGAACAGATCGAGAAGCTCATCGAGCGAATCGAAGAAGACGAAGACGTGCAAAACGTCTTCCACAATATGAAGGAAGAGGAGGGCGAGGAA","4.40","-20.04","26441","MKRWGNMARVFTKLGKEITIAAKEGGPDVETNPRLRILVQTAKKENMPKENVERAIKKATSKDYTDYKEMNYEGYGPYGIAIFVETATDNTTRTVANVRSYFNKHGGSLGTSGSLEFLFQHKCVFHIVKKDDMDLESLELELIDYGVDELEEDENEIILYGDFSENSNIQKYLEDAGYEIASAEFVRIPNDTKEVTAEQREQIEKLIERIEEDEDVQNVFHNMKEEEGEE","115874 115149","TIGR ID: PG0097","conserved hypothetical protein (YEBC-related)","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 7-224 are 49% similar to gb|AAF60954.1|AF104936_2 unknown of Riemerella anatipestifer, residues 2-224 are 44% similar to gb|AAD05730.1| putative of Helicobacter pylori J99, residues 3-223 are 45% similar to emb|CAB73426.1| hypothetical protein of Campylobacter jejuni.","
InterPro
IPR002876
Family
Protein of unknown function DUF28
PD004323\"[1-222]TY097_PORGI_Q7MXR6;
PTHR12532\"[1-224]TUNCHARACTERIZED
PF01709\"[1-224]TDUF28
TIGR01033\"[1-224]TTIGR01033: conserved hypothetical protein T
InterPro
IPR003308
Domain
Integrase, N-terminal zinc-binding
G3DSA:1.10.10.200\"[4-67]Tno description
noIPR
unintegrated
unintegrated
G3DSA:3.30.1270.10\"[67-224]Tno description


","BeTs to 13 clades of COG0217COG name: Uncharacterized ACR, YebC familyFunctional Class: SThe phylogenetic pattern of COG0217 is ----yqvcEBrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** PF01709 (Domain of unknown function) with a combined E-value of 1.2e-52. PF01709B 25-56 PF01709C 63-109 PF01709E 196-223","Residues 9-222 are 38% similar to a (PROTEIN INTERGENIC REGION RUVC-ASPS) protein domain (PD004323) which is seen in YEBC_CLOHI.","","Tue Jun 12 16:57:48 MDT 2001","","Tue Jun 12 16:57:48 MDT 2001","Tue Jun 12 16:57:48 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Tue Jun 12 16:57:48 MDT 2001","Tue Jun 12 16:57:48 MDT 2001","","","Wed Mar 22 15:07:46 MST 2000","Tue Jun 12 17:02:02 MDT 2001","Tue Mar 27 09:49:18 MST 2001","Tue Mar 27 09:49:18 MST 2001","Tue Mar 27 09:49:18 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 27 09:49:18 MST 2001","-57% similar to PDB:1MW7 X-RAY STRUCTURE OF Y162_HELPY NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET PR6 (E_value = 5.2E_39);-52% similar to PDB:1LFP Crystal Structure of a Conserved Hypothetical Protein Aq1575 from Aquifex Aeolicus (E_value = 8.0E_32);-52% similar to PDB:1KON CRYSTAL STRUCTURE OF E.COLI YEBC (E_value = 1.5E_30);","","","Residues 1 to 224 (E-value = 8.6e-98) place PG0085 in the DUF28 family which is described as Domain of unknown function DUF28 (PF01709)","Tue Mar 27 09:49:18 MST 2001","161579534","","","","","","1","","","PG0097" "PG0086","118376","115920","2457","ATGAATATCTCATACAAATGGCTCTTGGAGTACCTGCCCTGCACCCTCTCTCCGCAAGAGATAGCCGACACGCTCACTTCCATCGGTCTGGAGACCGGCGGTGTAGAAGAGATCGAAACGATTCGGGGAGGCTTGCGAGGTTTGGTCATCGGCCATGTTCTGACTTGTGAGGAACACCCGAATTCGGATCATTTGCATATCACCACGGTAGATGTGGGGGCGGATGCGCCTTTGCAAATCGTCTGCGGTGCGCCCAATGTGGCTGCAGGACAAAAGGTGGTAGTGGCAACGGTGGGCACCACGCTCTATCACGGAGAAGAAGAGTTTGCCATCAAGAAATCCAAGATTCGCGGAGTGGAGAGTTTCGGAATGATTTGCTCCGAAGTGGAAATCGGTGTAGGCTCGTCGAATGACGGGACTATCGTCCTGCCGAGCGATGCGCCCGTGGGGATGCCTGCCGCCGAGTACTACCATGTAGAAAGCGATTATTGCATAGAAGTGGACATTACGCCCAACCGCGTGGATGCCACTTCGCACTATGGTGTGGCACGCGACTTGGCGGCCAGCCTGAAACGTAATGGTGTACCTGCGGAACTCAAACTGCCGGAGGTAAACCTGCCGACGGACATCATCGACAGTCGAATAGAAGTGAAAGTGGCAGATGCTACGGCCTGCCCACGCTATCAGGGATTGGTGATCAGAGATATTACGGTAGGAGAAAGCCCCGAATGGCTGCGCAACAGGTTGCAGGCGATCGGCCTGCGTCCGATCAATAACATCGTGGATATTACGAATTACGTCCTTCATGAATTTGGCCAACCCCTTCATGCTTTTGATTTGGCTTTTATCAAGGGAGACCGAGTTCATGTGCAGACAGTGGCCGAGGGTACTCCGTTCGTCACACTGGATGGAGTGGAGCGTAAGCTGACGGCCGAGGATCTGATGATATGCGATTCGAACGGCGATCCCATGTGTGTGGCGGGCGTTTTCGGTGGTCTTCACTCCGGTGTAACGGAAAAGACAACAGATATATTCCTCGAGAGTGCCAATTTCAACCCGACGATGGTACGCCGTACGGCTCGCCGATTGGGTCTCAATACGGACAGTTCTTTCCGCTTTGAGCGCGGATTGGATCCGGAGCGCACGGATTGGGCATTGCGTCGTGCTGCTTCGCTTATATTAGAGATTGCAGGAGGCCATCTCGGTGGGATGACAGATGTTTATTCCAATCCTCTGAAACCGCACCTAATCAGTTTGTCTTTCGAGAAAGTGAACAGCGTGATAGGCAGAACGATAGAGCCTGAGATGGTGAGGAGCATCCTCAACAGCCTTGAGATTCGTATCAGCAAAGAAGAAGACGGGGTCATGACGTTGGAAGTGCCACGCTATCGTACGGATGTGACCCGCGATGTGGATGTGATCGAAGAGATCATGCGCATCTATGGCTACAACCAAGTGGAGCTGACGGGCTATATCCGTGCCAGCCTGGGACACGAGACAGAAACAGATCGTCGCTACAAATGGCAGACAGTCGTATCCGAACAATTGGTCGGAGCCGGTTTCAATGAGATACTCAACAATTCGCTTACGGCCGGTTCTTATTACGAAGGTCTTAAGAGCCATCCGAGAGAGATGGCAGTGGAGCTGATGAATCCGCTGAGTCAGGAGCTTAACTGCATGAGGCAGACTCTGCTATTCGGAGGATTGGAGACGCTCAGCCACAACCTCCGTCGTAAGCATCTCTCCCTCTATCTCTTTGAATGGGGTAAATGCTATCGCTTCCATGCCGCAAAGCGCACGGACGAGACTCCCCTTGCGGCCTATGCAGAGGACGATCGCCTCGGCATTTGGATATGCGGACAACGGGTGCACAATAGCTGGGCACACCCCGAAGAACCGACTTCGGTATTTGAACTGAAAGCTGTGGTAGAACAGGTACTTTGCCGCGTAGGGATCGAAACCGGAGCTTATACGCTGAAGACAGCTGACAATGATCTGTACGCATCTGCCATGGAGGTCAAGACTCGTTCGGGCAAACTGTTGGGTACATTCGGAACGGTATCAACGGAACTGATCAAACGCTTCGAAATCGAGCAACCCGTTTACTTTGCCGAATTGCTTTGGGATGCCCTCATGAGCGAATCGGCCCGATACAAATTGGAGGCACGCGATCTGCCTCGCTTCCCCGAAGTAAAGAGGGATCTGGCATTGCTTTTGGACAAGGCTGTTTCCTTTGCCGAAATAGAATCACTGGCTCGTGGCTGTGAGAAGAAACTGCTGCGCAGGGTGGAACTATTCGATGTGTACGAGGGAAAGAACCTGCCTGCCGGAAAGAAGAGTTATGCAGTGAGCTTCTTCCTGCGCAATGATGAGAAGACGCTTAACGACAAACAGATAGAGGCTATCATGGCTAAGATACGGACGACTCTGGAGCAAAAGCTCGGTGCGCAACTCCGC","5.30","-22.68","91266","MNISYKWLLEYLPCTLSPQEIADTLTSIGLETGGVEEIETIRGGLRGLVIGHVLTCEEHPNSDHLHITTVDVGADAPLQIVCGAPNVAAGQKVVVATVGTTLYHGEEEFAIKKSKIRGVESFGMICSEVEIGVGSSNDGTIVLPSDAPVGMPAAEYYHVESDYCIEVDITPNRVDATSHYGVARDLAASLKRNGVPAELKLPEVNLPTDIIDSRIEVKVADATACPRYQGLVIRDITVGESPEWLRNRLQAIGLRPINNIVDITNYVLHEFGQPLHAFDLAFIKGDRVHVQTVAEGTPFVTLDGVERKLTAEDLMICDSNGDPMCVAGVFGGLHSGVTEKTTDIFLESANFNPTMVRRTARRLGLNTDSSFRFERGLDPERTDWALRRAASLILEIAGGHLGGMTDVYSNPLKPHLISLSFEKVNSVIGRTIEPEMVRSILNSLEIRISKEEDGVMTLEVPRYRTDVTRDVDVIEEIMRIYGYNQVELTGYIRASLGHETETDRRYKWQTVVSEQLVGAGFNEILNNSLTAGSYYEGLKSHPREMAVELMNPLSQELNCMRQTLLFGGLETLSHNLRRKHLSLYLFEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQRVHNSWAHPEEPTSVFELKAVVEQVLCRVGIETGAYTLKTADNDLYASAMEVKTRSGKLLGTFGTVSTELIKRFEIEQPVYFAELLWDALMSESARYKLEARDLPRFPEVKRDLALLLDKAVSFAEIESLARGCEKKLLRRVELFDVYEGKNLPAGKKSYAVSFFLRNDEKTLNDKQIEAIMAKIRTTLEQKLGAQLR","phenylalanyl-tRNA synthetase beta subunit","The phenylalanyl-tRNA synthetase is typically a heteroteramericmolecule consisting of two alpha and two beta chains.TIGR ID: PG0099 The alpha subunit is PG1545.","phenylalanyl-tRNA synthetase beta subunit","Cytoplasm","Numerous significant hits in gapped BLAST to phenylalanyl-tRNA synthetase beta subunit; e.g. residues 1-819 are 36% similar to Z75208 of B. subtilis, residues 1-819 are 36% similar to AE004702 of Pseudomonas aeruginosa, residues 1-819 are 34% similar to AP001517 of Bacillus halodurans.This sequence is also orthologous to CT475 and to BT0626.","
InterPro
IPR002547
Domain
t-RNA-binding region
PF01588\"[48-152]TtRNA_bind
PS50886\"[42-154]TTRBD
InterPro
IPR004532
Family
Bacterial phenylalanyl-tRNA synthetase, beta subunit
TIGR00472\"[1-819]TpheT_bact
InterPro
IPR005121
Domain
Ferredoxin-fold anticodon-binding
G3DSA:3.30.70.380\"[728-813]TFdx_AntiC_bd
PF03147\"[726-819]TFDX-ACB
SSF54991\"[720-819]TFdx_AntiC_bd
InterPro
IPR005146
Domain
B3/4
PF03483\"[224-398]TB3_4
InterPro
IPR005147
Domain
tRNA synthetase, B5
G3DSA:3.30.56.20\"[414-488]TB5
PF03484\"[414-483]TB5
InterPro
IPR009061
Domain
Putative DNA binding
SSF46955\"[413-487]TPutativ_DNA_bind
InterPro
IPR012340
Domain
Nucleic acid-binding, OB-fold
G3DSA:2.40.50.140\"[41-160]TOB_NA_bd_sub
noIPR
unintegrated
unintegrated
G3DSA:3.30.930.10\"[503-709]TG3DSA:3.30.930.10
G3DSA:3.50.40.10\"[202-413]TG3DSA:3.50.40.10
PTHR10947\"[1-819]TPTHR10947
SSF50249\"[38-187]TNucleic_acid_OB
SSF55681\"[479-712]TSSF55681
SSF56037\"[206-412]TSSF56037


","BeTs to 17 clades of COG0072COG name: Phenylalanyl-tRNA synthetase beta subunitFunctional Class: JThe phylogenetic pattern of COG0072 is amtkYqvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 2","***** PF01588 (Putative tRNA binding domain) with a combined E-value of 3.4e-08. PF01588A 62-73 PF01588B 110-127***** DM01195 (METHIONINE--TRNA LIGASE) with a combined E-value of 3.6e-06. DM01195A 57-65 DM01195B 110-127","Residues 155-260 are 34% similar to a (PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN) protein domain (PD217334) which is seen in SYFB_RICPR.Residues 165-706 are 35% similar to a (SYNTHETASE PHENYLALANYL-TRNA AMINOACYL-TRNA BETA CHAIN) protein domain (PD003388) which is seen in O67620_AQUAE.Residues 1-147 are 35% similar to a (SYNTHETASE PHENYLALANYL-TRNA BETA) protein domain (PD009777) which is seen in SYFB_MYCTU.Residues 725-819 are 40% similar to a (SYNTHETASE AMINOACYL-TRNA) protein domain (PD006935) which is seen in SYFB_BACSU.Residues 49-150 are 49% similar to a (SYNTHETASE AMINOACYL-TRNA PROTEIN LIGASE BIOSYNTHESIS) protein domain (PD002123) which is seen in SYFB_ECOLI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","Wed Mar 22 10:05:17 MST 2000","Tue Mar 26 15:09:06 2002","Wed Mar 22 10:05:17 MST 2000","Tue Dec 2 17:22:42 2003","Tue Mar 26 15:09:06 2002","Tue Jun 5 16:42:15 MDT 2001","Tue Jun 5 16:42:15 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Jun 5 16:42:15 MDT 2001","-48% similar to PDB:1B70 PHENYLALANYL TRNA SYNTHETASE COMPLEXED WITH PHENYLALANINE (E_value = 1.5E_91);-48% similar to PDB:1B7Y PHENYLALANYL TRNA SYNTHETASE COMPLEXED WITH PHENYLALANINYL-ADENYLATE (E_value = 1.5E_91);-48% similar to PDB:1EIY THE CRYSTAL STRUCTURE OF PHENYLALANYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH COGNATE TRNAPHE (E_value = 1.5E_91);-48% similar to PDB:1JJC Crystal structure at 2.6A resolution of phenylalanyl-tRNA synthetase complexed with phenylalanyl-adenylate in the presence of manganese (E_value = 1.5E_91);-48% similar to PDB:1PYS PHENYLALANYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS (E_value = 1.5E_91);","","","Residues 48 to 152 (E-value = 1.3e-26) place PG0086 in the tRNA_bind family which is described as Putative tRNA binding domain (PF01588)Residues 162 to 307 (E-value = 1.7e-50) place PG0086 in the B3_4 family which is described as B3/4 domain (PF03483)Residues 414 to 483 (E-value = 1.7e-18) place PG0086 in the B5 family which is described as tRNA synthetase B5 domain (PF03484)Residues 726 to 819 (E-value = 3.9e-28) place PG0086 in the FDX-ACB family which is described as Ferredoxin-fold anticodon binding domain (PF03147)","Tue Dec 2 17:22:42 2003","34539967","","","","","","1","","","PG0099" "PG0088","119278","118856","423","ATGTCAATGATCGCTGTCTTTTTATCCCCTATCCTCCCACCTCACGGCACAGAGCCGATCAAGCAGCGGACAGTGGGTGCAAAAGTAAAACCTTTTTCCGAATCGGCAAAATCAATCGGCTCTTTTTTCAGGGCTGACGCTCAAGAAAAAGCTCGTCGCCTGATCCTCCCCCTAAAAAAAGAATCCCGACGCGCTCGGCGGAACAATTCCTCTATCAATCGGGCAGCAATCGCTTTTGCGGTCACAAAAGTACGCCTTTTTTCTTTACAGACAAATCTTTCAAAATCTTTTTTCAACCGGTTCGACAAAAAAAACAGCCCCCGAAGAAAAGGACTCCCTCCCAAGAAAGAAGACAAAAGGGAGCGGATATATAATATGTTCGCGCGCGTAAGAACAATTAAAAAGACCGCAAACGAAAAGAAA","12.20","26.23","16201","MSMIAVFLSPILPPHGTEPIKQRTVGAKVKPFSESAKSIGSFFRADAQEKARRLILPLKKESRRARRNNSSINRAAIAFAVTKVRLFSLQTNLSKSFFNRFDKKNSPRRKGLPPKKEDKRERIYNMFARVRTIKKTANEKK","119278 118856 [Shorter 117 280 99]","NO TIGR ID corresponds to this gene.","hypothetical protein","Periplasm","No significant hits in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Wed Mar 8 16:13:35 MST 2000","Wed Mar 8 16:13:35 MST 2000","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Feb 8 10:33:10 MST 2001","Thu Feb 8 10:33:10 MST 2001","Thu Feb 8 10:33:10 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","PG0088 is identical to PG1459 another hypothetical protein, over 141 aa residues. It is nearly identitical to PG1119 and PG1814, also hypothetical proteins.","Wed Mar 28 15:59:56 MST 2001","Wed Mar 28 15:59:56 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Mar 28 15:59:56 MST 2001","","","","","","","1","","","" "PG0091","125481","127505","2025","ATGATAGTCTGTATTGCCGAAAAGCCCAGTGTGGGGCGTGAGATCGCTGCTGTACTCGGTGCCACCAAAGCCTATAAAGGCTATATGGAGGGCAACGGTTATCAGGTGACATGGACTTTCGGACATCTCTGTGCCCTCAAAGAACCTCACGACTATGCACCCGAATGGAAGCGATGGAGTATCAGTTCTCTACCGATGATACCACTGCGATTTGGCATCAAACTCATCGATAGCGATAGTATTCGGGAGCAATTCGGCACCATCGAAAGGCTTGTCCATGAAGCGGATATGGTCGTGAACTGCGGTGATGCCGGACAGGAGGGAGAGCTGATCCAGCGTTGGGTATTGCAGAAAACGGGCTGCACATGTCCCGTGCGGCGACTTTGGATATCTTCTCTTACTGAGGAGTCTATCCGTGAAGGCTTTGCGAGGCTGCGCGACAGCGAAGAATTTCATTCCCTATATGAGGCCGGACTGGCTCGTGCCATAGGCGACTGGCTATTGGGTATGAACGCTACGCGTCTTTATACGCTCCGCTTCGGGGGCAACCGACAGGTACTTTCCATCGGACGTGTACAGACTCCGACTCTCGCCCTTATTGTCAGGAGACAGCACGAGATCGAGCACTTCACCCCTGAAGTCTACTGGGAGGTGAAGACCATCTACCGCGATACGGTGTTCAATGCCACCAAGGGACGCTTTTCCTCGATCGAGGATGCTCGTCGGGAAGTGGAGGTCGTAGCTGGCAGCCCATTTGCTGTTACCTCCGTGGCTACGAAGAAAGGTCGGGAGCTGCCGCCTCGACTTTTCGACCTCACCGGCCTACAGGTAGAATGCAATAAGAGGTTTGCCATGACGGCCGATGCTACGCTACGCACCATCCAATCGCTGTATGAGAAGAAGATCACCACCTATCCGCGCGTGGATACCACCTATCTGAGCGACGATGTATTCGAAAAAGTGCCGAATATCCTCCAAGGACTCTCCGACTATACCCTGCTCACAGCTCCACTTCGAAGTAGCAAACTAAAAAAAAGCAAGAAGGTATTCGACAATAGCAAGATCACTGACCACCATGCCATCATTCCCACCGGTCAGCCATCCCATGGTATGTCGGAGGATGAGCGACGTGTATTCGATCTGGTGGCCCGCCGATTTATAGCCGTTTTCTATCCGGACTGCATATTCAGCCAGACCACGGTCTTGGGACAAGCAGCTAAGGTAGAGTTCAAAACCACGGGGAAACAGATACTGGAGCCCGGCTGGCGCACTGTCTTCACCGATCCGCAGACGGACGATGATGGAGAGAACAAGGACGAGGAGAAAAAACTGCCAATATTCTCCGAGGGCGAAAGTGGAGTACACACCCCCGAGGTGCAGGAGAAAACGACACAGCCGCCCAAATTCTATACCGAAGCTACACTCCTGCGTGCCATGGAGACGGCCGGCAAGTCGGTCAAGGACGAAGAGCTCCGCGATGCCCTCAAAGAAAATGGCATCGGCCGGCCGTCTACGCGAGCAGCCATCATTGAGACTCTCTTCAAGCGCAACTACATTTATAAAGAGAAGAAGAATCTCAAAGCTACTCCTACGGGTATGTCTTTGATAGCGACGATCGACTATGACCTGCTCAAGAGTGCCGAGCTGACCGGCCAATGGGAATACAAGCTTCGTCGCATCGAGCGAGGCGACTATTCAGCAGCCGATTTTATCAATGAATTGAAAGTACTCCTGACCCATCTGATTCCTAATGTACTCAAGAGCAACTCTTCCGTACTCCTGTCAGAGCCGATACCTGCTGCTTCGCCTGCTCCCGGCAAAAAGAAAAAGGCTGATAAACCCATGCAGAAGCAGCTCGATCTCACCTGTCCGGTATGTGGCAAGGGAATCATTGTCCGCGGTCGGGAAGCTTTCGGTTGCAATGCCTTTCGCGAAGGCTGCACCTTCCGACTTCCATACTCTGAGTATCCTGCATCTCTGTCCGACAACGAATTGGTTGATCTCCTTTCTTCGCAAAAAGGACAC","8.20","7.45","75978","MIVCIAEKPSVGREIAAVLGATKAYKGYMEGNGYQVTWTFGHLCALKEPHDYAPEWKRWSISSLPMIPLRFGIKLIDSDSIREQFGTIERLVHEADMVVNCGDAGQEGELIQRWVLQKTGCTCPVRRLWISSLTEESIREGFARLRDSEEFHSLYEAGLARAIGDWLLGMNATRLYTLRFGGNRQVLSIGRVQTPTLALIVRRQHEIEHFTPEVYWEVKTIYRDTVFNATKGRFSSIEDARREVEVVAGSPFAVTSVATKKGRELPPRLFDLTGLQVECNKRFAMTADATLRTIQSLYEKKITTYPRVDTTYLSDDVFEKVPNILQGLSDYTLLTAPLRSSKLKKSKKVFDNSKITDHHAIIPTGQPSHGMSEDERRVFDLVARRFIAVFYPDCIFSQTTVLGQAAKVEFKTTGKQILEPGWRTVFTDPQTDDDGENKDEEKKLPIFSEGESGVHTPEVQEKTTQPPKFYTEATLLRAMETAGKSVKDEELRDALKENGIGRPSTRAAIIETLFKRNYIYKEKKNLKATPTGMSLIATIDYDLLKSAELTGQWEYKLRRIERGDYSAADFINELKVLLTHLIPNVLKSNSSVLLSEPIPAASPAPGKKKKADKPMQKQLDLTCPVCGKGIIVRGREAFGCNAFREGCTFRLPYSEYPASLSDNELVDLLSSQKGH","125436 127505","TIGR ID: PG0104","DNA topoisomerase III","Cytoplasm","Numerous hits in gapped BLAST to DNA topoisomerase III sequences, e.g. residues 3-640 are 33% similar to emb|CAB12233.1| DNA topoisomerase III of Bacillus subtilis, residues 5-649 are 34% similar to gb|AAF72351.1|AF192329_12 DNA topoisomerase III-like protein of Enterococcus faecalis, residues 2-672 are 34% similar to dbj|BAB07106.1| DNA topoisomerase III of Bacillus halodurans.This sequence is similar to BT2089.","
InterPro
IPR000380
Family
DNA topoisomerase, type IA
PR00417\"[98-111]T\"[187-205]T\"[300-309]T\"[378-394]T\"[499-513]TPRTPISMRASEI
PTHR11390\"[21-480]T\"[497-574]TTopo_IA
InterPro
IPR003601
Domain
DNA topoisomerase, type IA, domain 2
SM00436\"[124-217]TTOP1Bc
InterPro
IPR003602
Domain
DNA topoisomerase, type IA, DNA-binding
SM00437\"[258-536]TTOP1Ac
InterPro
IPR005738
Family
DNA topoisomerase III, bacterial-type
TIGR01056\"[1-673]TtopB
InterPro
IPR006154
Domain
Toprim subdomain
SM00493\"[1-124]TTOPRIM
InterPro
IPR006171
Domain
TOPRIM
PF01751\"[1-131]TToprim
InterPro
IPR013497
Domain
DNA topoisomerase, type IA, central
PF01131\"[147-542]TTopoisom_bac
InterPro
IPR013824
Domain
DNA topoisomerase, type IA, central region, subdomain 1
G3DSA:1.10.460.10\"[153-218]T\"[458-587]TTopo_IA_cen_sub1
InterPro
IPR013826
Domain
DNA topoisomerase, type IA, central region, subdomain 3
G3DSA:1.10.290.10\"[268-392]TTopo_IA_cen_sub3
InterPro
IPR014396
Family
DNA topoisomerase IA
PIRSF001508\"[1-674]TTopA
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.140\"[1-152]TG3DSA:3.40.50.140
SSF56712\"[1-588]TSSF56712


","BeTs to 17 clades of COG0550COG name: Topoisomerase IAFunctional Class: LThe phylogenetic pattern of COG0550 is amtkyqvcEBrHUJgpolinxNumber of proteins in this genome belonging to this COG is 3","***** IPB000380 (Prokaryotic DNA topoisomerase I) with a combined E-value of 1.7e-58. IPB000380A 17-46 IPB000380B 98-115 IPB000380C 148-184 IPB000380D 187-218 IPB000380E 269-296 IPB000380F 301-310 IPB000380G 352-364 IPB000380H 378-394 IPB000380I 483-519","Residues 371-582 are 35% similar to a (TOPOISOMERASE ISOMERASE DNA ENZYME DNA-BINDING I) protein domain (PD001411) which is seen in Q60149_STRPY.Residues 3-179 are 43% similar to a (TOPOISOMERASE ISOMERASE DNA ENZYME DNA-BINDING I) protein domain (PD001285) which is seen in P96583_BACSU.Residues 239-309 are 41% similar to a (TOPOISOMERASE ISOMERASE DNA ENZYME I DNA-BINDING) protein domain (PD001593) which is seen in O87222_BBBBB.Residues 183-364 are 26% similar to a (DNA TOPOISOMERASE I EC) protein domain (PD112610) which is seen in TOP1_BACAN.","","Tue Jun 12 16:59:48 MDT 2001","","Tue Jun 12 16:59:48 MDT 2001","Tue Jun 12 16:59:48 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Tue Jun 12 16:59:48 MDT 2001","Tue Jun 12 16:59:48 MDT 2001","","","Thu Feb 15 11:08:45 MST 2001","Wed Dec 10 14:35:45 2003","Fri Mar 23 09:44:14 MST 2001","Wed Dec 10 14:35:45 2003","Wed Dec 10 14:35:45 2003","yes","Fri Feb 20 15:41:32 MST 1998","Residues 5-669 are 34% similar to PG1310, a predicted DNA topoisomerase III and residues 27-570 are 26% similar to PG0680, DNA topoisomerase I.","Tue Jun 12 17:06:27 MDT 2001","Thu Feb 15 11:08:45 MST 2001","-52% similar to PDB:1D6M CRYSTAL STRUCTURE OF E. COLI DNA TOPOISOMERASE III (E_value = 2.4E_84);-52% similar to PDB:1I7D NONCOVALENT COMPLEX OF E.COLI DNA TOPOISOMERASE III WITH AN 8-BASE SINGLE-STRANDED DNA OLIGONUCLEOTIDE (E_value = 7.1E_84);-40% similar to PDB:2GAI Structure of Full Length Topoisomerase I from Thermotoga maritima in triclinic crystal form (E_value = 5.2E_26);-40% similar to PDB:2GAJ Structure of Full Length Topoisomerase I from Thermotoga maritima in monoclinic crystal form (E_value = 5.2E_26);-40% similar to PDB:1CY0 COMPLEX OF E.COLI DNA TOPOISOMERASE I WITH 3'-5'-ADENOSINE DIPHOSPHATE (E_value = 9.1E_23);","","","Residues 1 to 131 (E-value = 3.1e-16) place PG0091 in the Toprim family which is described as Toprim domain (PF01751)Residues 147 to 542 (E-value = 7.1e-103) place PG0091 in the Topoisom_bac family which is described as DNA topoisomerase (PF01131)","Wed Dec 10 14:35:45 2003","34539972","","","","","","1","","","PG0104" "PG0092","128286","128525","240","TTGTGCTCCTCCAATCATCGCCTTGCTCCCCGTGTATGCACCTTGTGTGCCACGCTGTGCCGTCTGATTCACATTACGTCCATACGAGCCGATACCTCCTCCGGCTCCAATAATCTATCCGGCTACCGTCGGTACACAGTAGCAGCCAACAATACCAATGAGGAGAAACTCGCTCGAATGAAGCCGCAAAACCAATATAATGCGTCGACCCCGGGGGTAGCCTGTCAGGGCGATCGCGTT","9.70","6.22","8724","LCSSNHRLAPRVCTLCATLCRLIHITSIRADTSSGSNNLSGYRRYTVAANNTNEEKLARMKPQNQYNASTPGVACQGDRV","128286 128525","NO TIGR ID corresponds to this gene.","hypothetical protein","Periplasm, Extracellular","No significant hit found in gapped BLAST with E value less than e-04.","
noIPR
unintegrated
unintegrated
signalp\"[1-30]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Feb 15 11:19:37 MST 2001","","Thu Feb 15 11:19:37 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","PG0092 is paralogous to PG1105, also a hypothetical. Residues 1-66 are 92% similar to PG1105.","Thu Feb 15 11:19:37 MST 2001","Thu Feb 15 11:19:37 MST 2001","-56% similar to PDB:1OF5 CRYSTAL STRUCTURE OF MEX67-MTR2 (E_value = );","","","No significant hits to the Pfam 11.0 database","Wed Mar 28 15:54:07 MST 2001","","","","","","","1","","","" "PG0093","128858","129991","1134","GTGGGGTATGTTATTGAAGATATTGTTGTGATGTGTAAATTTCAGGGATGGGCAGAAGAGATGATTCTTTTTCTGTTGCTTTTATTTGCGACCTCAATCCTTTCTTACATTGCTTTGCGTCGATTGTCTCGTATGGTGTATGCTCAAAGTGTTTTTGATCAAGAAAATGAAAGAACGGTACATAAAGGGGCTATACCCAGGTTAGGTGGTGTCATATTCTTTCCTGTAATAACATTGACAGTATCCCTTTTCTTAGCAATAAATAGTGTGCTAAGGATATCCATACACTTTCCTTTAGAAGAATTCTATGATCTTCTGTTCCTGTTGCCTGCGATGATTTTACTATACGCTATCGGTGTGATAGATGACTTGGTCGGACTATCTTATCGGCAAAAGTTCAAAGCTCAAATTCTCTCTTCCTCTATTTTGTTCTTATCGGGAGTCAGTCTTTCCGGTTTAGATGGTTTGTTATTCATAGAAGAGTTGCCTAAGATCTTACAATATCCGATAGTGGTGTTCTTTTTCCTCATGGTAATCAATAGTATAAATCTAATTGATGGAATCGATGGATTGGCTACAAGTCTGGTGCTTCTGGGGATGTTATTTTATATACCATTCTTTATCTATGTCAATATGTATTTATATGTAATAATCTGTGTGTCTGTTATTGGTTGCTTGGGAGCTTTTCTTCGGATGAATCTTTATGGTACAACTGAGAAGCGAACAAAGATTTTCATGGGAGATACGGGATCTTTAACTTTAGGCCTTCTTTTGAGCTTTATGGCCTTACGCTTGCTTACCCCCATTGCAAATACTGCTTTACCTCTTCCATATGTAGTAGCTCCGCTACTTATTCCTTGTTTCGATTTATTCCATGTTTTTGTATTGAGAATTTTATCAAAGAAAAATCCTTTTAAACCTGATAAGAGTCATATTCATCATAGACTTATGGCTTTGGGGTTGACGCAGAGACAAACACTGGTTGTCATATTACTATACTCTATCGCGTTCTCTTTGTTTAATATCTTTGGGTACCCATTTTTTAATATCAATGTGCTGCTTCTGCTGGATATCGTCATATGGATCACATCCAATATGCTTATAGCCAATCTTTCGCGCAAAAGGGGATGTGTC","8.90","6.20","42681","VGYVIEDIVVMCKFQGWAEEMILFLLLLFATSILSYIALRRLSRMVYAQSVFDQENERTVHKGAIPRLGGVIFFPVITLTVSLFLAINSVLRISIHFPLEEFYDLLFLLPAMILLYAIGVIDDLVGLSYRQKFKAQILSSSILFLSGVSLSGLDGLLFIEELPKILQYPIVVFFFLMVINSINLIDGIDGLATSLVLLGMLFYIPFFIYVNMYLYVIICVSVIGCLGAFLRMNLYGTTEKRTKIFMGDTGSLTLGLLLSFMALRLLTPIANTALPLPYVVAPLLIPCFDLFHVFVLRILSKKNPFKPDKSHIHHRLMALGLTQRQTLVVILLYSIAFSLFNIFGYPFFNINVLLLLDIVIWITSNMLIANLSRKRGCV","128858 129991","TIGR ID: PG0106","probable glycosyltransferase","Inner membrane, Cytoplasm","A hit in gapped BLAST to a putative undecaprenyl-phosphate N-acetyl-glucosaminyl transferase from Lactobacillus delbrueckii(AF320250). Residues 42-342 are 29% similar to this protein. A weaker hit observed to the teichoic acid linkage unit synthesis, tagO, of Bacillus subtilis: residues 19-339 are 26% similar to this protein. See also the llm protien of Staphylococcus aureus (D21131).This sequence is similar to Smu0223 a predicted rgpG sequence.","
InterPro
IPR000715
Family
Glycosyl transferase, family 4
PTHR22926\"[40-375]TPHOSPHO-N-ACETYLMURAMOYL-PENTAPEPTIDE-TRANSFERASE
PF00953\"[105-271]TGlycos_transf_4
InterPro
IPR003524
Family
Phospho-N-acetylmuramoyl-pentapeptide transferase
PS01348\"[180-191]TMRAY_2
noIPR
unintegrated
unintegrated
PTHR22926:SF2\"[40-375]TGLYCOSYL TRANSFERASE
signalp\"[1-48]?signal-peptide
tmhmm\"[21-39]?\"[71-91]?\"[106-126]?\"[165-185]?\"[190-209]?\"[215-235]?\"[250-270]?\"[276-296]?\"[320-340]?\"[346-368]?transmembrane_regions


","BeTs to 12 clades of COG0472COG name: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferaseFunctional Class: MThe phylogenetic pattern of COG0472 is -mTkyQVCEBRHUJ--olinXNumber of proteins in this genome belonging to this COG is 2","***** PF00953 (Glycosyl transferase) with a combined E-value of 5.5e-16. PF00953A 109-135 PF00953B 180-191 PF00953C 232-264","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed May 2 12:02:54 MDT 2001","Tue Aug 3 10:14:39 2004","Wed Mar 28 16:11:55 MST 2001","Thu Feb 15 11:39:38 MST 2001","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 23-302 are 24% similar to PG0519, a predicted phospho-N-acetylmuramoyl pentapeptide transferase.","Wed Mar 28 16:11:55 MST 2001","Thu Feb 15 11:39:38 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 105 to 271 (E-value = 1.3e-16) place PG0093 in the Glycos_transf_4 family which is described as Glycosyl transferase (PF00953)","Wed Mar 28 16:11:55 MST 2001","34539973","","","","","","1","","2","PG0106" "PG0094","130241","131446","1206","ATGAGAAAAGCTTGTTTCATGGGCCTGGGGTATATAGGTCTGCCAACGGCAATTGTAACTGCCAAAAGTGGAATAGAAGTATTAGGGGTAGATATAAACACCAATATCGTTGCAAAAACCAATTCAGGAAAATTGCACTTTGTGGAAGCAGGTATGGAAGATCTTTTACAGGAAGTTATACAAAAAGAAACATTCCGTGCTTCTACAACACCGGAGGATAGCGATGTTTATCTGGTTGTGGTGCCTACACCCTTCAAGGCCAATCATGAGCCGGACATTACATGTGTAGAGGCTGCAACAAGATCAATACTTCCCTTGCTCAAGAAGGGCGATTTATTTATTATCGAATCTACCTCTCCGATAGGAACAACAGAGCAGATGGCTGATCTAATCTATCGAGAGCGTCCCGAACTTAAAGACCAATTATATATGGCTTACTGTCCGGAACGTATCCTTCCCGGTAATGTTATTTATGAACTGGAGCACAACGATCGGGTCATCGGGGGCTTAAGCGCAGAAGCGACCGAACGGGCAAAAGAGTTCTATGCTCATTTTGTTAAAGGAACCTTGCATGGAACTAATGCTCGTACAGCAGAACTCTGCAAGCTTACAGAGAATGCTAGCCGAGATGTACAGATCGCGTTTGCCAACGAACTTTCTTTCATTTGTGACAAAGCCGGAATCAATGTGTGGGAACTTATCGAACTGGCCAATAAGCATCCAAGGGTGAATATTCTTCAGCCCGGTAGTGGAGTAGGGGGGCATTGTATTGCGGTGGATCCGTATTTTATCTCTTCGGCTTTCCCTCTGGAGAGTAAACTGATTGCCGGTGCTCGTGAAATCAATAACTACAAGGCTTTTTGGTGTGCCGAGAAAATAAGTAAGGCTATTCAAGACTTTGAGATACGACATGGCCATACTCCAGTAGTAGCTATGATGGGACTGGCCTTTAAACCGGACATCGATGATCTCAGGGAGTCGCCTGCAAAATACATTGCCACTCGAGTAATGCAGGGGTTGAACAAAGCCGAGATCTTGATTGTAGAACCCAACATTTCGAAGCATAATACTTTCAAGCTAACGGACTACCGTGATGCTTATGAGCAGGCAGACATTGTAGCTTTCTTAACGGCTCATACTCCTTTCAAATTCCTCGAATACCGAACCGACAAAGTCATCCTCGACTTCTGTGGTGTCTTCAAAAAA","6.00","-6.70","44779","MRKACFMGLGYIGLPTAIVTAKSGIEVLGVDINTNIVAKTNSGKLHFVEAGMEDLLQEVIQKETFRASTTPEDSDVYLVVVPTPFKANHEPDITCVEAATRSILPLLKKGDLFIIESTSPIGTTEQMADLIYRERPELKDQLYMAYCPERILPGNVIYELEHNDRVIGGLSAEATERAKEFYAHFVKGTLHGTNARTAELCKLTENASRDVQIAFANELSFICDKAGINVWELIELANKHPRVNILQPGSGVGGHCIAVDPYFISSAFPLESKLIAGAREINNYKAFWCAEKISKAIQDFEIRHGHTPVVAMMGLAFKPDIDDLRESPAKYIATRVMQGLNKAEILIVEPNISKHNTFKLTDYRDAYEQADIVAFLTAHTPFKFLEYRTDKVILDFCGVFKK","130241 131446","TIGR ID: PG0108","UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase","Cytoplasm","Numerous hits in gapped BLAST to UDP-ManNAc dehydrogenase sequences, e.g. residues 4-402 are 69% similar to the protein from Bacteroides fragili (gb|AAD56735.1). Residues 7-385 are 50% similar to the enzyme from E. coli (gb|AAG58982.1).This sequence is similar to BT2945.","
InterPro
IPR001732
Domain
UDP-glucose/GDP-mannose dehydrogenase, N-terminal
PF03721\"[2-187]TUDPG_MGDP_dh_N
InterPro
IPR008927
Domain
6-phosphogluconate dehydrogenase, C-terminal-like
SSF48179\"[195-285]T6DGDH_C_like
InterPro
IPR014026
Domain
UDP-glucose/GDP-mannose dehydrogenase, dimerisation
PF00984\"[195-285]TUDPG_MGDP_dh
InterPro
IPR014027
Domain
UDP-glucose/GDP-mannose dehydrogenase, C-terminal
PF03720\"[311-402]TUDPG_MGDP_dh_C
InterPro
IPR014028
Domain
UDP-glucose/GDP-mannose dehydrogenase, dimerisation and substrate-binding
PTHR11374\"[155-402]TUDPG_MGDP_DH_Creg
InterPro
IPR014360
Family
UDP-glucose/GDP-mannose dehydrogenase
PIRSF000124\"[1-401]TUDPglc_GDPman_dh
InterPro
IPR014687
Family
UDP-N-acetyl-D-mannosaminuronate dehydrogenase
PIRSF500136\"[2-402]TUDP_ManNAc_DH
noIPR
unintegrated
unintegrated
G3DSA:1.10.8.220\"[195-278]TG3DSA:1.10.8.220
G3DSA:3.40.50.1870\"[290-400]TG3DSA:3.40.50.1870
G3DSA:3.40.50.720\"[2-193]TG3DSA:3.40.50.720
PTHR11374:SF4\"[155-402]TPTHR11374:SF4
SSF51735\"[2-201]TSSF51735
SSF52413\"[302-402]TSSF52413


","BeTs to 4 clades of COG0677COG name: UDP-N-acetyl-D-mannosaminuronate dehydrogenaseFunctional Class: MThe phylogenetic pattern of COG0677 is -mtK----e------------Number of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","Residues 256-385 are 39% similar to a (DEHYDROGENASE OXIDOREDUCTASE NAD UDP-GLUCOSE) protein domain (PD001281) which is seen in WECC_ECOLI.Residues 148-255 are 65% similar to a (DEHYDROGENASE OXIDOREDUCTASE NAD UDP-GLUCOSE) protein domain (PD001282) which is seen in EPSD_BURSO.Residues 7-125 are 52% similar to a (DEHYDROGENASE OXIDOREDUCTASE NAD UDP-GLUCOSE) protein domain (PD001278) which is seen in WECC_ECOLI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Feb 15 11:46:15 MST 2001","Fri Dec 19 10:35:55 2003","Fri May 23 14:16:05 2003","","Thu Feb 15 11:42:00 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 3-327 are 32% similar to PG1125 and residues 7-387 are 24% similar to PG1026. Both PG1125 and PG1026 are associated with polysaccharide biosynthesis. ","Wed Apr 4 11:36:57 MDT 2001","Thu Feb 15 11:42:00 MST 2001","-44% similar to PDB:2O3J Structure of Caenorhabditis Elegans UDP-Glucose Dehydrogenase (E_value = 1.5E_24);-46% similar to PDB:1MFZ Partially refined 2.8 A Crystal structure of GDP-mannose dehydrogenase from P. aeruginosa (E_value = 2.5E_22);-46% similar to PDB:1MUU 2.0 A crystal structure of GDP-mannose dehydrogenase (E_value = 2.5E_22);-46% similar to PDB:1MV8 1.55 A crystal structure of a ternary complex of GDP-mannose dehydrogenase from Psuedomonas aeruginosa (E_value = 2.5E_22);-55% similar to PDB:2P0V Crystal structure of BT3781 protein from Bacteroides thetaiotaomicron, Northeast Structural Genomics Target BtR58 (E_value = 2.5E_22);","","","Residues 2 to 187 (E-value = 9.9e-60) place PG0094 in the UDPG_MGDP_dh_N family which is described as UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain (PF03721)Residues 195 to 285 (E-value = 4.7e-36) place PG0094 in the UDPG_MGDP_dh family which is described as UDP-glucose/GDP-mannose dehydrogenase family, central domain (PF00984)Residues 311 to 402 (E-value = 3.8e-13) place PG0094 in the UDPG_MGDP_dh_C family which is described as UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain (PF03720)","Fri Dec 19 10:35:55 2003","34539974","","","","","","1","","2","PG0108" "PG0095","131471","132691","1221","ATGAGAGGCTATTTAGGTTATATTCTCTGCTTCACGATTTACTTTGTCTTGCACTACATTGAAGGATTCCCTCCAGTGTTTGGTATGCCTATTGCACAGTTATGGAAGCTTCCATTACTAGCCTACCTTTTATTCCTATCAATACAGAGTAAAAGGAGGAAATACGCATTAGAAAAGAGTAGTTATTGGATGGCTCTACAGAGTAGCCTAAACATTGAATCGATTCTCAATCCGATCTATTCTGTTACACATGGTATGAAGCAATTACCTCTCGCTCTCTTTTTTCGTTTTTGGTTGGTTAAATTCTCTAATCGAGTTGATCGGCTCGAATTCTTCCTTTATACCTTAGCCCAATTTGTACTTCTTGCATCACTTTTAGTACTTGTGGGGATTGTATCTCCAGTGGAAGACTTTTTATCTGCTGATGCTTTTGGAATTGAGGGGGCAGTTTATTATTCTGGAATTTTTGGAGCTCCTCATGCGGCATCCTCCTACTTCGCCGCATCAATCCTCGTTCTAACAAACGGATTTAGACTGAATAAATTTAGGACGTCATTTCAGAAGGGTTTCAATGCTTCTCTGATTGTAGTAGGATTAATTTCTGTTTTTCAGGCCTATGTCCGTACAGGCTGGTTGATGCTTCTTGTTGCTCTGGTTATTCTAATGCTTCCTCGTAAAATTACTATTCATCACTTGGTTAAATTTTCATTTTTGATAGGCTTAGTTGGTGTTGCTCTTGTTTATTTCTATAATACCAACGAGCAGTTTCAGGCAAGGATAACTGGGCGCAATGTGCATACTAATGCTTCTGCAGAAGGAATGGATTTAAAAGGATCTGGACGTACTTCTTTTTGGGTGAATGGGATAGAAGGATGGAGTGAGGGTAATATTTATGAATTTCTGTTGGGACAGGGGTATACTCAAGTTGTTGAGCGTAATTTTCAGAAGACTGGCATGCGAGTTTTCTCACACAATCAGTTTGTGAACGCTCTTGCTGAGCATGGGTTTATTGGTCTTGTTTTGTTGTTGCTGTTTTATCTATCAATCTACCGCTTAATTCGTGCAAATAGGTTTTCTCCGTATTACCACTTGAGCCTTTCTTTATTTTGGTCAGCCGTATTATTCTCTTTTTTTCAGAATGAGATGTATTTTGATTACGCTGTAATTTTTTCTTTAGCTCTTGTATTGCTTGTTACTAGTAGTCATCGCATTAAGAATGTT","10.50","15.35","46473","MRGYLGYILCFTIYFVLHYIEGFPPVFGMPIAQLWKLPLLAYLLFLSIQSKRRKYALEKSSYWMALQSSLNIESILNPIYSVTHGMKQLPLALFFRFWLVKFSNRVDRLEFFLYTLAQFVLLASLLVLVGIVSPVEDFLSADAFGIEGAVYYSGIFGAPHAASSYFAASILVLTNGFRLNKFRTSFQKGFNASLIVVGLISVFQAYVRTGWLMLLVALVILMLPRKITIHHLVKFSFLIGLVGVALVYFYNTNEQFQARITGRNVHTNASAEGMDLKGSGRTSFWVNGIEGWSEGNIYEFLLGQGYTQVVERNFQKTGMRVFSHNQFVNALAEHGFIGLVLLLLFYLSIYRLIRANRFSPYYHLSLSLFWSAVLFSFFQNEMYFDYAVIFSLALVLLVTSSHRIKNV","131471 132691","TIGR ID: PG0109","conserved hypothetical protein","Inner membrane, Cytoplasm","Matches in gapped BLAST to gi:24473746 from Streptococcus thermophilus.","
noIPR
unintegrated
unintegrated
signalp\"[1-22]?signal-peptide
tmhmm\"[5-25]?\"[31-49]?\"[111-131]?\"[150-170]?\"[185-203]?\"[209-227]?\"[232-252]?\"[328-348]?\"[358-378]?\"[384-404]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Mar 1 10:00:03 2005","Tue Mar 1 10:00:03 2005","Thu Feb 15 11:58:06 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 15 11:58:06 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34539975","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Tue Mar 1 10:00:03 2005","","1","","2","PG0109" "PG0096","132731","133768","1038","ATGTATCAATTGCTTTTTATCGGGGGCTTAGGAGCTGCCCATGAATTTGGAGGAGAATTGACTAAAAATAAATTCCTAACGAAAAGGCTTAGGGACTTTGTTGACAAACTAATTATAGTTGATACCTATCGGAGTCGTTCTAAGCCTTGGCGATTGTGGAAATTGCCTTTTATCTTATTAATAAATCCCAATACTCCCATAATTTTCTCAACTAGTTATGGCAATGTGTATTGGTTGCACCGTATTTTGAAAGTTGTCTTTCCTAAGCGTAAGATTGTTCTTTGGGTAATAGGGGGGGATCTTCATTTAGAAGTTGAGAAGGGAAGATACCGAGTTGATGTTTTGAAAAGTTTGCAATATCTTTTGGTCGAAGGGCAAGCAATGAAAGATGCTTTGTGTGGGCAAGGTGTAGAGAATGTAAAAGTTATGCCTAACTTCAAGGACATATCTCTGTTTTCTCCCTTGCATTGTCATACTCCCTATACTCCATCCAAGGTGTTGCGTCTTGTCTTTTTCTCTCGTATCATGCCTGATAAAGGTTGTGATTTGATTTTGGATTTAGCTCATAAATTGAATGAGAGAGGCTACAAGGATAAATTTGTCATTGACTTTTACGGCCCTATAGCTCCCGATTATAGCAAGAGGTTTAGCTCTATACTTGATACGTTACCCAATGTACACTACCAGGGAACCCTTGATTTACTATCTGGGGCTGGATATGTTACACTGGCATCTTATCATCTGACTCTATTCCCAACCTTTTGGTCTGGAGAGGGTTTCCCAGGAGTCATTGTGGACTCTTTCATCTCAGGTTTGCCTATATTGGCCTCTGATTGGGGGCTAAACAAGGAACTTGTGGATAAAGAAACCGGCTTTGTCGTACCGGCTCACAACACGACTGACATGCTATCGATTGTATCAGATGTCATAAATGGAGGGATCGACTTAGAACCATTGGCACAAACTGCTCGACAACGAGCGACGAACTATGACGTTAATCATTTGATTACAAATGACCTAATAGTAGAAATTTTTAAG","8.70","5.27","39196","MYQLLFIGGLGAAHEFGGELTKNKFLTKRLRDFVDKLIIVDTYRSRSKPWRLWKLPFILLINPNTPIIFSTSYGNVYWLHRILKVVFPKRKIVLWVIGGDLHLEVEKGRYRVDVLKSLQYLLVEGQAMKDALCGQGVENVKVMPNFKDISLFSPLHCHTPYTPSKVLRLVFFSRIMPDKGCDLILDLAHKLNERGYKDKFVIDFYGPIAPDYSKRFSSILDTLPNVHYQGTLDLLSGAGYVTLASYHLTLFPTFWSGEGFPGVIVDSFISGLPILASDWGLNKELVDKETGFVVPAHNTTDMLSIVSDVINGGIDLEPLAQTARQRATNYDVNHLITNDLIVEIFK","132716 133768","Results from gapped BLAST revealed no significant hits to the first 110 amino acids.TIGR ID: PG0110. Reported by Chen et al., 2004, to be highly divergent in ATCC 33277.","conserved hypothetical protein (possible transferase)","Inner membrane, Cytoplasm","Two weak hits in gapped BLAST: residues 151-296 are 28% similar to residues 288-423 of a probable glycosyl transferase from Pseudomonas aeruginosa (AE004568). Residues 138-311 are 26% similar to a predicted transmembrane protein from Streptococcus pneumoniae (AJ006986).","
InterPro
IPR001296
Domain
Glycosyl transferase, group 1
PF00534\"[243-326]TGlycos_transf_1
noIPR
unintegrated
unintegrated
PTHR12526\"[138-345]TPTHR12526
PTHR12526:SF7\"[138-345]TPTHR12526:SF7
SSF53756\"[1-337]TSSF53756


","BeTs to 11 clades of COG0438COG name: Glycosyltransferases IFunctional Class: MThe phylogenetic pattern of COG0438 is AMTKYQVCEBRhUj--o---XNumber of proteins in this genome belonging to this COG is 9","***** PF00534 (Glycosyl transferases group 1) with a combined E-value of 1.7e-06. PF00534B 251-286","No significant hit to the ProDom database.","","Tue Jun 12 17:02:45 MDT 2001","","Tue Jun 12 17:02:45 MDT 2001","Tue Jun 12 17:02:45 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Tue Jun 12 17:02:45 MDT 2001","Tue Jun 12 17:02:45 MDT 2001","","Tue Feb 22 13:42:17 2005","Thu Feb 15 12:03:38 MST 2001","Tue Jun 12 17:22:04 MDT 2001","Tue Jun 12 17:02:45 MDT 2001","Tue Feb 22 13:42:17 2005","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 15 12:03:38 MST 2001","-46% similar to PDB:1NM8 Structure of Human Carnitine Acetyltransferase: Molecular Basis for Fatty Acyl Transfer (E_value = );-46% similar to PDB:1S5O Structural and Mutational Characterization of L-carnitine Binding to Human carnitine Acetyltransferase (E_value = );-42% similar to PDB:2GCJ Crystal Structure of the Pob3 middle domain (E_value = );-42% similar to PDB:2GCL Structure of the Pob3 Middle domain (E_value = );-48% similar to PDB:2OUV crystal structure of pde10a2 mutant of D564N (E_value = );","","","Residues 153 to 326 (E-value = 1.2e-06) place PG0096 in the Glycos_transf_1 family which is described as Glycosyl transferases group 1 (PF00534)","Tue Jun 12 17:02:45 MDT 2001","34539976","","Chen T, Hosogi Y, Nishikawa K, Abbey K, Fleischmann RD, Walling J, Duncan MJ.Comparative whole-genome analysis of virulent and avirulent strains of Porphyromonas gingivalis.J Bacteriol. 2004 Aug;186(16):5473-9.PMID: 15292149","","Tue Feb 22 13:42:17 2005","","1","","2","PG0110" "PG0097","133820","135085","1266","ATGCTTAATAATGCCTCCTACCGTCTAAAATACTGGCTTAGAAAAGCAGTTAAATGGATGCCTGCCTATAGAAAAACTTATAGGGAAGCACATGTAGTATCATCACGAGAGCAACAAGAGCATCTGTTTTGGGAATTGCTCAAGTATGTTATTGTACATGTCCCTTACTACAGAGATTATCAAAAGTTCCTCGGAGGGAATGTTCAAATTGAAGATTTACCTATAGTCAAAAAGGAAGATGTAGCCAAGGATGCTTTAAGTTTTGTTTCCGATGAGTTTAATCCAGAGAAACTCTTACGAGTATCTACTGGAGGTACTACAGGTACATCAACCAATATCTATACCTCATGGTTGGATGGGGTGCGTCAGACGGCTTATATTGATGCTGCAATAGATCTAGGGCGTGTTTCTAATCCTATTATTTGCACTCTAAGGGAGCATGACCTTAAGGCAACGGAGAAGTATCGTTTTTGGGGAAATCGTTTGATGCTATCGCCCTCCAATATGAATAAGGATAGCTTGGAATATTATGTTGATCTTATGCGGAGGTATAGGGTGAATATATTACATTGCTATCCTTCGTCATTGATGGTGCTTTGCAAATTGCTCCAAAATACTCAGGTTAATCTTGATATTGAGGCTATTTTAGTTAGTTCAGAAATAGTTTCTTCAGAGCTAAAGCATATTGTTAGAGAAGTATTCCCTAGAGCTACTTTTATCAATGTATATGCACAAACAGAAAATGTTGCACGAGGTATTAGTTTGAATGCAGCACCTTTTGAGTTCTTGTCTTGTAAGTATTTAGTAGAGTTTTTAGACACGGGAGAGAGAAGGGATGGTAATATCATTGCCGAAATTGTGGGAACAAATCTGGAGAAGAAGAGTATGCCTTTGATAAGGTTTGCGACTGGTGATTATGCTGTCCTAAATCAGAGAGGTGAGGTTATTGATATCCTAGGCCGTACAAGTGAGTATCTGATTGATAAGTTTGGTAATCCGATTCCTTGTATTGTTACTAATAGACCTCATACTCTTGATAATGTACTTTTAGCTCAGTACTACCAAGAGAAGATAGGAGAGTTTGAATATCGTGTCATGGTGAATGAGAATTTCAATAGTAATGATATTCGTGCTATAGAAGAAGATATTAAGCTGAATTTTGGAGATGGGCTGTTCGCAAGGGTCGTTGTTGTGACACAAATGGAGAAAACCTCCAGAGGTAAACATCGTAAACTTGTTCAGAGACTAGATTTAAGTTTGTATTTA","8.10","3.72","48848","MLNNASYRLKYWLRKAVKWMPAYRKTYREAHVVSSREQQEHLFWELLKYVIVHVPYYRDYQKFLGGNVQIEDLPIVKKEDVAKDALSFVSDEFNPEKLLRVSTGGTTGTSTNIYTSWLDGVRQTAYIDAAIDLGRVSNPIICTLREHDLKATEKYRFWGNRLMLSPSNMNKDSLEYYVDLMRRYRVNILHCYPSSLMVLCKLLQNTQVNLDIEAILVSSEIVSSELKHIVREVFPRATFINVYAQTENVARGISLNAAPFEFLSCKYLVEFLDTGERRDGNIIAEIVGTNLEKKSMPLIRFATGDYAVLNQRGEVIDILGRTSEYLIDKFGNPIPCIVTNRPHTLDNVLLAQYYQEKIGEFEYRVMVNENFNSNDIRAIEEDIKLNFGDGLFARVVVVTQMEKTSRGKHRKLVQRLDLSLYL","133814 135085","TIGR ID: PG0111. Reported by Chen et al., 2004, to be highly divergent in ATCC 33277.","possible CAPK protein","Cytoplasm","Few weak hits in gapped BLAST to the predicted capK protein. Residues 53-413 are 24% similar to residues 70-439 of the V.cholerae protein (AE004175). Residues 37-410 are 23% similar to capK protein from Staphylococcus aureus (gbAAA64650.1). Also one very weak hit to IAA-lysine synthetase from Pseudomonas syringae (M35373).","
InterPro
IPR000873
Domain
AMP-dependent synthetase and ligase
PF00501\"[175-248]TAMP-binding
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.980\"[94-266]TG3DSA:3.40.50.980
SSF56801\"[103-415]TSSF56801


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 177-314 are 24% similar to a (INDOLEACETATE--LYSINE LIGASE EC 6.3.2.20) protein domain (PD138702) which is seen in IAAL_PSESS.Residues 37-416 are 21% similar to a (CAPK PROTEIN) protein domain (PD141484) which is seen in CAPK_STAAU.","","Tue Jun 12 17:07:26 MDT 2001","","Tue Jun 12 17:07:26 MDT 2001","Tue Jun 12 17:07:26 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Tue Jun 12 17:07:26 MDT 2001","Tue Jun 12 17:07:26 MDT 2001","","Tue Feb 22 13:43:12 2005","Thu Feb 15 12:08:58 MST 2001","Tue Feb 22 13:43:12 2005","Thu Feb 15 12:08:58 MST 2001","","Tue Feb 22 13:43:12 2005","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 15 12:08:58 MST 2001","-48% similar to PDB:1N05 Crystal Structure of Schizosaccharomyces pombe Riboflavin Kinase Reveals a Novel ATP and Riboflavin Binding Fold (E_value = );-48% similar to PDB:1N06 Crystal Structure of Schizosaccharomyces pombe Riboflavin Kinase Reveals a Novel ATP and Riboflavin Binding Fold (E_value = );-48% similar to PDB:1N07 Crystal Structure of Schizosaccharomyces pombe Riboflavin Kinase Reveals a Novel ATP and Riboflavin Binding Fold (E_value = );-48% similar to PDB:1N08 Crystal Structure of Schizosaccharomyces pombe Riboflavin Kinase Reveals a Novel ATP and Riboflavin Binding Fold (E_value = );-53% similar to PDB:2FC9 Solution structure of the RRM_1 domain of NCL protein (E_value = );","","","No significant hits to the Pfam 11.0 database","Mon May 21 16:50:47 MDT 2001","34539977","","Chen T, Hosogi Y, Nishikawa K, Abbey K, Fleischmann RD, Walling J, Duncan MJ.Comparative whole-genome analysis of virulent and avirulent strains of Porphyromonas gingivalis.J Bacteriol. 2004 Aug;186(16):5473-9.PMID: 15292149","","Tue Feb 22 13:43:12 2005","","1","","2","PG0111" "PG0098","135230","136027","798","TTGGCTCTTTCGGAGTTTCGAAATATGGTAGAGATTCCTCGAAGCAAGGAGATTGAAGTTGAAGTTATACAAGATACTCTCGAGCCTCATACTCCTGATTCGATCTTCTCTAATAATTGGATTTCCTTTCATGAAGATGGTACGGTCGTAACCTATCCAATGTTTGCAGTCAATAGACGGGCAGAGCGTCGGGAGGAGATTATACAATGTCTACAAGAAAGAGGACTACTTGTTAAGAGACGCATAGATTATTCCGAAGCTGAGATTGCTCAAGTCTTTCTCGAAGGAACTGGTAGTATGGTACTAGATCGCAAGTATCGACGTGCTTATGCCTGTCTCTCCGCTCGGACAAATAAGGAGTTATTCCTTCGTTTCTGTAATGATCTAGGGTACAAACCAATCTGTTTTGATGCCGTACATCCTGTCGGCGAGGGTATGTTGCCGATCTATCACACCAATGTTATGATGGCTATTGGGACTGCCTATGCAGTGATTTGTTTGGAGAGCATCACAAACCTAGAGCAAAGGGCTAGGGTTGTACAAGAACTTGAGACGACAGGACACGAGATTGTTGAGATTTCTTTTGAGCAGATGAATCAGTTTGCGGGTAATATGCTTGAGGTAAAGGCTAAAGATGGTCGTTTGTATCTATGTATGTCTCAGTCGGCTTATGATGCTCTTTCTGTGGAAGACAGAACTAGACTGGCCAAGCATACAACACTCCTTTCTGCTCCAATCCCAACCATTGAAACATTGGGTGGTGGGAGCGTGCGTTGTATGATGGCAGAACTCTTTAAC","5.20","-7.87","30228","LALSEFRNMVEIPRSKEIEVEVIQDTLEPHTPDSIFSNNWISFHEDGTVVTYPMFAVNRRAERREEIIQCLQERGLLVKRRIDYSEAEIAQVFLEGTGSMVLDRKYRRAYACLSARTNKELFLRFCNDLGYKPICFDAVHPVGEGMLPIYHTNVMMAIGTAYAVICLESITNLEQRARVVQELETTGHEIVEISFEQMNQFAGNMLEVKAKDGRLYLCMSQSAYDALSVEDRTRLAKHTTLLSAPIPTIETLGGGSVRCMMAELFN","135230 136027","TIGR ID: PG0112. Reported by Chen et al., 2004, to be highly divergent in ATCC 33277.","conserved hypothetical protein","Cytoplasm","A single hit in gapped BLAST to a hypothetical protein from V.cholerae, gbAAF96890.1. Residues 2-265 are 43% similar to this protein.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","","","","Tue Feb 22 13:44:00 2005","Tue Feb 20 14:54:15 MST 2001","Tue Feb 22 13:44:00 2005","Tue Feb 20 14:43:30 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 2-265 are 46% similar to PG1121, a conserved hypothetical protein.","Wed Apr 4 11:38:31 MDT 2001","Tue Feb 20 14:43:30 MST 2001","-42% similar to PDB:2B64 30S ribosomal subunit, tRNAs, mRNA and release factor RF1 from a crystal structure of the whole ribosomal complex. This file contains the 30S subunit, tRNAs, mRNA and release factor RF1 from a crystal structure of the whole ribosomal complex\". The entire crystal structure contains one 70S ribosome, tRNAs, mRNA and release factor RF1 and is described in remark 400. (E_value = );-63% similar to PDB:1DGJ CRYSTAL STRUCTURE OF THE ALDEHYDE OXIDOREDUCTASE FROM DESULFOVIBRIO DESULFURICANS ATCC 27774 (E_value = );-44% similar to PDB:1JWK Murine Inducible Nitric Oxide Synthase Oxygenase Dimer (Delta 65) with W457A Mutation at Tetrahydrobiopterin Binding Site (E_value = );-39% similar to PDB:1XX1 Structural basis for ion-coordination and the catalytic mechanism of sphingomyelinases D (E_value = );-39% similar to PDB:2F9R Crystal structure of the inactive state of the Smase I, a sphingomyelinase D from Loxosceles laeta venom (E_value = );","","","No significant hits to the Pfam 11.0 database","Wed Apr 4 11:38:31 MDT 2001","","","Chen T, Hosogi Y, Nishikawa K, Abbey K, Fleischmann RD, Walling J, Duncan MJ.Comparative whole-genome analysis of virulent and avirulent strains of Porphyromonas gingivalis.J Bacteriol. 2004 Aug;186(16):5473-9.PMID: 15292149","","Tue Feb 22 13:44:00 2005","","1","","2","PG0112" "PG0099","136065","136919","855","ATGTTCCTAAAGAAACTTTCAAGAATGTTACTGTCTTCCAAGGCTCGAGCTTCATTAAAACGTTGGAAGCGCAAGCTTCAGGGTATCGGTAAGGGTACCACCTCGTTGGAAGATCTGAGAAAAGTCCTCGTCGAAGAGCTTGGTGTCCGTCCAGGAGATAGACTGATTGTTACCTCTGGTTTTGGATACTTAGGAGCAGAGGGGTATTCTCCAGAAGATGTTGTTTGTCTATTACAATCTTTGGTTACAGACGAAGGGTTGATTATGATGCCTTATTATCCACCAAAGAATTCGCACGAATGGGCTAGTGAAGGTGAGGTATTTGATATGAATCATACTAAGTCTGGGATGGGAGTCTTAACGAATGTCTTTGCCCAGGCAGCAGGTGTTTATATGAGTGTTCATCCAACTAAGGCTGTTTGTGTCTGGGGGAAGGATGCCGAGCAGATTGTACAAGGGCATGAGTGTACAGAAACTCCGTATGCTCACAATTCCCCGTATGGTAAGGTGCTACAACTTGGGTCTAAATCTATAGGCCTTGGTGTTGGTAATGCCCCTATGTTTCATGTATTTGAAGATACGTGGGATTCTCCTCGTTCTCGCTATTATCAAGAGCAGCCATATCTGTTGAATGTAATTCTAAAGGATGGTAGTAAAACAGAGGTAAGTACGATGGTTCATCGAGCTGATATGGTAGATAGTGCAACGCCTATTTCGGAGTACATCAGGAATTTGAATGCTCCGACATATCGTAGAATAAAATTTGGCAAATCTTTTGTCTGGATTGCAGATAATACAGAACTCTCTGAGATTACCAAAAGACGATTTGAAGCTGGTCAGAATAGATTCAAGAGA","9.70","7.55","32037","MFLKKLSRMLLSSKARASLKRWKRKLQGIGKGTTSLEDLRKVLVEELGVRPGDRLIVTSGFGYLGAEGYSPEDVVCLLQSLVTDEGLIMMPYYPPKNSHEWASEGEVFDMNHTKSGMGVLTNVFAQAAGVYMSVHPTKAVCVWGKDAEQIVQGHECTETPYAHNSPYGKVLQLGSKSIGLGVGNAPMFHVFEDTWDSPRSRYYQEQPYLLNVILKDGSKTEVSTMVHRADMVDSATPISEYIRNLNAPTYRRIKFGKSFVWIADNTELSEITKRRFEAGQNRFKR","136065 136919","TIGR ID: PG0113. Reported by Chen et al., 2004, to be highly divergent in ATCC 33277.","possible aminoglycoside N3-acetyltransferase (AAC3)","Periplasm, Cytoplasm","Weak hits in gapped BLAST to aminoglycoside N3-acetyltransferase sequences (EC 2.3.1.81), e.g., residues 44-192 are 27% similar to this sequence.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Tue Feb 22 13:44:48 2005","Tue Feb 20 15:24:21 MST 2001","Tue Feb 20 15:24:21 MST 2001","Tue Feb 20 15:24:21 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 20 15:24:21 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Apr 24 13:05:00 MDT 2001","34539978","","Chen T, Hosogi Y, Nishikawa K, Abbey K, Fleischmann RD, Walling J, Duncan MJ.Comparative whole-genome analysis of virulent and avirulent strains of Porphyromonas gingivalis.J Bacteriol. 2004 Aug;186(16):5473-9.PMID: 15292149","","Tue Feb 22 13:44:48 2005","","1","","2","PG0113" "PG0100","136919","138055","1137","ATGAAGCAGATACTATGCACACTGGACTATGAGCTGTATGGCAATGGTACAGGTGATGTCTTCGAACATATCATCAAGCCAACCGAAGAGCTACTGGCTATAGCTCGGCGACACGGTATTAAGTACACGATTTTCTTTGAGGTGGTGGAGTTTTGGTACCTCAAAAGGGAGTGGGAGCGAGGAAATAAAATGGGATATACAGAGGATCCTATCTCCGCCATGGAGCAACAACTTCGAGAGGCTTATTTGCAGGGGCATGATGTGCAGTTGCATCTGCATCCGCAGTGGATTGGTGCTGTGCATCAAGATGGTCAATGGAGACTCGATCTCTCAAATTGGTGTCTTGGTCGCTATCAAGGTAAGGGGGAATACTCTTTGCTAAGTCTACTCAAGCGAGGTAAAGAAACGATAGAGGAGATTATTCGCCCTGTCGATCCGCACTACAGCTGTATTGCTCTACGGGCAGGTGGATATAATGCTCAGCCGTCCGAGGAGATTGTCCGAGCGATGCGACAAGTCGGTCTCAAAGTAGATAGCTCTATTTACCCAGGAGGCTTTGAGACGGGTGCGCTATCCAATTACGATTACAGCTCCGTAGCTCCCGATTTAGGACATTGGTATGTGGAGGATCGGCTCGAATACTCGGCTCATGGAGCAACAGACATTCTGGAGTTACCCATTGTCGCTTTCCCAATTCGTCGCTTGCAGAAGTATCTGTCATTGGATCGGATTAAGGCACTCTTCCAAAATCGTAAGTCCGCGGCAGATACTTATTCCGCCAAAACGGCCAACAAAGGGGGGATTTGGGGCAAGATAAGTTACTTTGTAGAGCTTGAATGGCAAACATGGGATTTCTGCCTATTTTCCAAAAATCTGCATCGTCGATTCTTGAAACGTGTTGAGAGCCAACGGGGGCGCAAGGAGTTTGTTCTGGTTGGCCACCCGAAGAGCTTCGTCTCCGGGGAGAGTTTTAATTATCTTATCGGGCAACTTAAAAGCAGCTATCAGTTCTTGAGCATGACAGAGTTGTATGATCAGAGGCTAAAGATAGGCACAAAGAAAGGCGTCAAGGATACTCATAAGCCCGAAACACCTGCCCCAGAAGGACCATCTCCAGAGGGACCTGAAGCTGGTTTG","7.60","2.73","43526","MKQILCTLDYELYGNGTGDVFEHIIKPTEELLAIARRHGIKYTIFFEVVEFWYLKREWERGNKMGYTEDPISAMEQQLREAYLQGHDVQLHLHPQWIGAVHQDGQWRLDLSNWCLGRYQGKGEYSLLSLLKRGKETIEEIIRPVDPHYSCIALRAGGYNAQPSEEIVRAMRQVGLKVDSSIYPGGFETGALSNYDYSSVAPDLGHWYVEDRLEYSAHGATDILELPIVAFPIRRLQKYLSLDRIKALFQNRKSAADTYSAKTANKGGIWGKISYFVELEWQTWDFCLFSKNLHRRFLKRVESQRGRKEFVLVGHPKSFVSGESFNYLIGQLKSSYQFLSMTELYDQRLKIGTKKGVKDTHKPETPAPEGPSPEGPEAGL","136919 138055","TIGR ID: PG0114. Reported by Chen et al., 2004, to be highly divergent in ATCC 33277.","conserved hypothetical protein","Cytoplasm","This protein shows 33% similarity over ~200 residues to Magnetococcus sp. MC-1 (gi22999591) and 24% similarity over the entire sequence to Cytophaga hutchinsonii (gi23134905).","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Tue Feb 22 13:45:23 2005","Fri Sep 10 16:09:36 2004","Tue Feb 22 13:45:23 2005","Tue Feb 20 15:25:18 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 20 15:25:18 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Feb 20 15:25:18 MST 2001","34539979","","Chen T, Hosogi Y, Nishikawa K, Abbey K, Fleischmann RD, Walling J, Duncan MJ.Comparative whole-genome analysis of virulent and avirulent strains of Porphyromonas gingivalis.J Bacteriol. 2004 Aug;186(16):5473-9.PMID: 15292149","","Tue Feb 22 13:45:23 2005","","1","","2","PG0114" "PG0100.1","138178","138612","435","ATGCTTAATGCAATTTATTTTTACCGATTGTCTCATTGGCTTTATCGTCATCATATCCCGATATTGCCAAAGTTAATCACATTGCTCATCTTCCTCATTTATAATAGCAAGATACCTCCTCAAGCTAAGATAGGCAAAGGATCTAAGTTCGGTTATGGAGGGATAAGTGTTGTGGTACATCATGACTCGGTGATAGGAGAAAATTGTAGTATTGGTCACGTTGTTACTATAGGAGGAGGTAATTCGAAGTATCCAGGAGTCCCTGTTATAGGAAATAATGTCCAGATTAGCCGAGGAAGTGTGGTTTTTGGCGGGATAACCATTGGTAATAACGTTGTTATAGGAGCCAATACAGTAGTTAATTTTCCTGTCCCAGACAATGCTGTTGTTGTTGGCAATCCTGGTCGTATTGTGCATATTAAGGAAAGTACATGT","10.50","8.56","15493","MLNAIYFYRLSHWLYRHHIPILPKLITLLIFLIYNSKIPPQAKIGKGSKFGYGGISVVVHHDSVIGENCSIGHVVTIGGGNSKYPGVPVIGNNVQISRGSVVFGGITIGNNVVIGANTVVNFPVPDNAVVVGNPGRIVHIKESTC","","TIGR ID: PG0115","serine-O-acetyltransferase","Cytoplasm, Periplasm, Inner membrane","Numerous weak hits in gapped BLAST to serine-O-acetyltransferase sequences, e.g., residues 5-138 are 47% similar to the enzyme from V.cholerae (gb|AAF94085.1|). Residues 8-142 are 36% similar to the enzyme from Spinacia oleracea (dbj|BAA13634.1).","
InterPro
IPR001451
Repeat
Bacterial transferase hexapeptide repeat
PF00132\"[35-52]T\"[62-79]T\"[87-104]T\"[105-122]THexapep
InterPro
IPR011004
Domain
Trimeric LpxA-like
SSF51161\"[3-138]TTrimer_LpxA_like
noIPR
unintegrated
unintegrated
G3DSA:2.160.10.10\"[37-138]TG3DSA:2.160.10.10
PTHR23416\"[90-142]TPTHR23416
PTHR23416:SF7\"[90-142]TPTHR23416:SF7


","BeTs to 6 clades of COG1045COG name: Serine acetyltransferaseFunctional Class: EThe phylogenetic pattern of COG1045 is ------vcebrhuj-------Number of proteins in this genome belonging to this COG is 1","***** IPB001451 (Bacterial transferase hexapeptide repeat) with a combined E-value of 3.9e-07. IPB001451A 59-78 IPB001451B 114-124 IPB001451A 71-90 IPB001451A 108-127 IPB001451A 96-115 IPB001451B 65-75","Residues 3-138 are 30% similar to a (TRANSFERASE ACYLTRANSFERASE PROTEIN REPEAT BIOSYNTHESIS) protein domain (PD000343) which is seen in O86162_SYNP8.","","Tue Jun 12 17:27:28 MDT 2001","","Tue Jun 12 17:27:31 MDT 2001","Tue Jun 12 17:27:31 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Tue Jun 12 17:27:31 MDT 2001","Tue Jun 12 17:27:31 MDT 2001","","","Tue Feb 20 15:47:23 MST 2001","Tue Jun 12 17:32:08 MDT 2001","Tue Apr 24 13:14:19 MDT 2001","Tue Feb 20 15:47:23 MST 2001","Tue Feb 20 15:47:23 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Apr 24 13:14:19 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Apr 24 13:14:19 MDT 2001","34539980","","","","","","1","","2","PG0115" "PG0101","138609","139829","1221","ATGTTAGCATCATTCCTCAAACTTAAAACCTATTGTGAACAAGAAGGCTTCAAAGGTTGGGATCCGTACGATGGATTGAACTCCAAGGTCTTTCGAGCCTTACCACTGCTCAAGCAATCAGCACTGTGCCGTCTGATCGTTATTCAGGGATTTAAACGTAGCCCAATCAATCTGCGACGTCTCGCCTTAGTACCCAAGGAGTATAATGCTAAGGGAATTGGCCTTTTTCTCCAAGGTTATTGCAATCTCTATCGTTTAGTAGAGCGTAACCCTCAGCTAACTAAGGAACTTGGTTCTCGGGAGGAGCTTTTGGAACAGGTCAAGAAGCTCGCCGATTTGCTTCTGGAGCTTCGTTCTCCTGGTGACTATAGTGGGGCTTGCTGGGGGTACAATTTTGATTGGCAAGCGCGCAGACTTTTCCTTTTCCCTAAATATACGCCGACGGTTGTGGCTACGAATTTCTGCGCTACGGCTCTGATGGAGGCGTATGAGGTTACACGCCAACAGGAGTATCTTGATGTTGCTCTCTCGGCGGCTCAATTTGTGATTAAGGATCTACATCGTACTGCTTATAGAGATGGCTTCCTGTTTTCGTATAGCCCCTTGGATGGCAACGATACGGTCTTTAATGCTTCTCTGCTTGGAGCGCGTCTCTTGAGCTATTGCTACCATTATACCAAAGACGAAGCGTATCGCACGCTTGCGCGCCAAACGATCTCAGCTTGCTGTGCTGCACAAGCCGAAGATGGTTCGTGGGTCTATGGGATGCTACCCGTGCAGTCATGGATTGATAGCTTCCATACCGGCTACAATTTGGATGCACTGATTGCCTATCAAGAGCTAACGGGGGACATTTCCTTTGCCGAGAATATAGAGCGTGGGTTGTCGTATTACTTAGAGCATTTCTTCGAGGCAGATGGTATGCCCAAGTATTATCACGATCGTACTTATCCAATCGACATTCATTGTCCTGGTCAGCTCTTCGTGTCGCTAGCTAGACTTCATCGCTATGACGAACATCGTGAATTGGTGGATCGGGTTATGGCTTGGACTATTAGCAGTATGCAGGATAAGAAGGGCTATTTTTACTATCAAATGAAGCCTGGCCTTAGCTCTAAGATTCCCTATATGAGGTGGAGCAATGCCTTTATGTTTTGTGCAATGTCTTATTATTTAATCAACTATAAAGAAATATCTGGTGGAGACTTCTCGAACGACCAA","7.10","0.47","47094","MLASFLKLKTYCEQEGFKGWDPYDGLNSKVFRALPLLKQSALCRLIVIQGFKRSPINLRRLALVPKEYNAKGIGLFLQGYCNLYRLVERNPQLTKELGSREELLEQVKKLADLLLELRSPGDYSGACWGYNFDWQARRLFLFPKYTPTVVATNFCATALMEAYEVTRQQEYLDVALSAAQFVIKDLHRTAYRDGFLFSYSPLDGNDTVFNASLLGARLLSYCYHYTKDEAYRTLARQTISACCAAQAEDGSWVYGMLPVQSWIDSFHTGYNLDALIAYQELTGDISFAENIERGLSYYLEHFFEADGMPKYYHDRTYPIDIHCPGQLFVSLARLHRYDEHRELVDRVMAWTISSMQDKKGYFYYQMKPGLSSKIPYMRWSNAFMFCAMSYYLINYKEISGGDFSNDQ","138609 139829","TIGR ID: PG0116","conserved hypothetical protein","Cytoplasm","One significant hit in gapped BLAST to a hypothetical protein from V.cholerae (gb|AAF94088.1). Residues 15-392 are 38% similar to this protein..","
InterPro
IPR008928
Domain
Six-hairpin glycosidase-like
SSF48208\"[28-314]TGlyco_trans_6hp


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Feb 20 15:55:28 MST 2001","Tue Feb 20 15:55:28 MST 2001","Tue Feb 20 15:55:28 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 20 15:55:28 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Feb 20 15:55:28 MST 2001","34539981","","","","","","1","","2","PG0116" "PG0102","139807","141342","1536","GTGGAGACTTCTCGAACGACCAATAGTGCAAAAAATAGTATAATCTCACTTTTGTTTTATGGGCTTCTTATTATTTTAACTTTCTTCTCACGTAGAGTTTTTATTGATGCCTTAGGTGCCGAACTCCTAGGACTCAATACTACAATTACTAATCTCTTAGGCCTTCTCAACTTGTCTGAGATGGGGATAGCTACGGCTATATCATTTACATTATATAAGCCGATTGCAGAGAATGATCGAGAGACAATACGAGAGATTGTTTCCGTTCAGGGGTGGGTTTATTTTATTGTTGCCTCTATTGTTATGCTTGGGGGCATTGTCATGATATTTTTTATCCCCCAGATCTTTGCAGATACTGCATTGCCATTGTCGTATGCTTATTCTACTTTTATCGTTTTTCTATTTTCTTCTTTGCTCGGATACTTCTTTAACTATAAACAAATCATGCATTCTGCCTCGCAGAAGGAGTATAAGAATGTATTGATTGTTAAGCTACTTCTTGCGATTAAGATAATCGCGCAGATAATAGCTCTGCGCTTTTTATCTTTAGGCTATCAAAGCTGGTTGATTTTAGAGGTGATTTTTTCCATCATGACTACACTTTTAATTAGTTATAGCATAAAGAGAGAGTACTCATGGCTTCGGGTTTCAATATTCGAGGGGCGTAGATTAACAGCTAAATATGCAATCATTTTTACCAAGGTTAAGCAGTTGTTTTTTCATAAAATTGGAGGATTCGTCCTATCTCAGGCTAGTCCTTTGGTTGTATTTGCATTTACTTCCTTGTCTTTAGTTGCTATATATGGCAATTATATGCTCGTTTTCTCGGGAATTACAACGCTTATTGCTGCCTCTTTTGGAGGGATTATGCCTGTAATTGGTAATATGATCGTAGAGAATGATAAAGAGAAAGAGAGAAAAGTGTTTGGAGAATACATGGTATTAAAGATGCTCTTAGGCGCTTCTTTTACTCATTGTTTATTTGTTGGAGGAAAGGTGTTCATGACACTTTGGATGGGCGAAGATTTTTTGCTCCCCGACTTCTCTTTTTACCTCTTACTTGCTATTGGTTATATTAACTTTACCCGTCCCTATGATACTTTTTTAGTCCCATACGGACTCGTAGAAGATATATGGGCTCCTATCGTAGAAGCTGGACTAAATTTAGGATTATCTATGCTATTGGGTTATTATTTCTCTCTACCTGGAATTTTAATTGGTATATTGATTAGTCTCATAGTGATTGTTTTAGGCTGGAAAGGATGTTTCTTGGCGACCAAAGGGCTACAGATGGCTCCAATATCTTTGATTGGTCGTTATTTAGGCTATACTGTTTTGTTTATTGGTCTATCCTTTGCGTTGGTTACTTTAGCTACCCAATTATCTTGGATATTTACCTTGAGACAGACTTTCGTAGATTGGGCTATCGAGATGCTTCTACAGTTTTTGTCTTTTTTGCTATTTGCGCTCCTAGTGTTAGTAGGATTTGATTCCAATACAAAGAACTTAATACGAAGAATATTCAGTTATTTAAGA","10.10","9.63","57689","VETSRTTNSAKNSIISLLFYGLLIILTFFSRRVFIDALGAELLGLNTTITNLLGLLNLSEMGIATAISFTLYKPIAENDRETIREIVSVQGWVYFIVASIVMLGGIVMIFFIPQIFADTALPLSYAYSTFIVFLFSSLLGYFFNYKQIMHSASQKEYKNVLIVKLLLAIKIIAQIIALRFLSLGYQSWLILEVIFSIMTTLLISYSIKREYSWLRVSIFEGRRLTAKYAIIFTKVKQLFFHKIGGFVLSQASPLVVFAFTSLSLVAIYGNYMLVFSGITTLIAASFGGIMPVIGNMIVENDKEKERKVFGEYMVLKMLLGASFTHCLFVGGKVFMTLWMGEDFLLPDFSFYLLLAIGYINFTRPYDTFLVPYGLVEDIWAPIVEAGLNLGLSMLLGYYFSLPGILIGILISLIVIVLGWKGCFLATKGLQMAPISLIGRYLGYTVLFIGLSFALVTLATQLSWIFTLRQTFVDWAIEMLLQFLSFLLFALLVLVGFDSNTKNLIRRIFSYLR","139807 141342","TIGR ID: PG0117. Reported by Chen et al., 2004, to be highly divergent in ATCC 33277.","conserved hypothetical protein (possible flippase)","Inner membrane, Cytoplasm","A few hits in gapped BLAST. Residues 1-456 are 37% similar to a predicted flippase from B. fragilis (AF048749). Residues 5-398 are 25% similar to a hypothetical protein from Salmonella choleraesuis (M84642).","
noIPR
unintegrated
unintegrated
signalp\"[1-35]?signal-peptide
tmhmm\"[15-35]?\"[54-72]?\"[93-113]?\"[123-145]?\"[160-182]?\"[188-208]?\"[246-268]?\"[274-294]?\"[309-329]?\"[343-361]?\"[371-393]?\"[399-419]?\"[440-465]?\"[471-493]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 15-303 are 26% similar to a (PROTEIN PUTATIVE O-ANTIGEN TRANSPORTER) protein domain (PD043236) which is seen in Q01431_BBBBB.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Tue Feb 22 13:46:04 2005","Tue Feb 20 16:01:12 MST 2001","Tue Feb 20 16:01:12 MST 2001","Tue Feb 20 16:01:12 MST 2001","","Tue Feb 20 16:01:12 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 4-512 share 47% identity with PG0813, conserved hypothetical protein.","Mon Apr 2 16:34:12 MDT 2001","Tue Feb 20 16:01:12 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Apr 2 16:34:12 MDT 2001","34539982","","Chen T, Hosogi Y, Nishikawa K, Abbey K, Fleischmann RD, Walling J, Duncan MJ.Comparative whole-genome analysis of virulent and avirulent strains of Porphyromonas gingivalis.J Bacteriol. 2004 Aug;186(16):5473-9.PMID: 15292149","","Tue Feb 22 13:46:04 2005","","1","","2","PG0117" "PG0103","141349","142401","1053","ATGATTATCCCTATGAACAACAAGCATCCTTTACCCACTCCACTAGTATCTATTATTATTCCGGTTTATAATGTAGAGAAGTATCTATATAGGTGTGTAAAAAGTATTCTGTCGCAAGATTATTATGACTATGAGATAATATTAGTAGATGATGGGTCTACTGATGGTAGCGGAATGATTTGCGATGAATTGACAGAACAGCATGGCCACATAAGCGTTATTCATAAGCCTAACGGAGGCCAGGGTAGTGCTAGAAATGCAGGATTAAATCATGCTAAAGGGAAATATATTTGGTTTATAGATTCCGATGATTATATCTCGCCCCATTCTCTTTCAGTTATTATGAGCCAAATTACGCAAGGGGATTTTGATGCGTTATTTTTCCCTTATATAAAGAGTAATGGTAATATCTTGATCGGAGAGGCTGTTGGGAAATACCATGCTGGGGTATACAGAGGCCAACAACTTTTGCTTGAAGGATTGGTCAATATGTCGATGTGTACGATTGTAAGTCTAAGATCTCGATGGATTGACAATCGAATATTCTTTAGGGAAGATATTCATTTCGAAGACTTTGAGATTAACCCAAGAGTATTAAAATTTCTCGAGAGAGCCATTTTTCTAGATTCCAATATAATACCTTATATCTATTATACTAGATTGGGTAGTACGATGAACCAATTGGATCCCCAAAAAAGAATGAGGCAAACAGAAGATTTCCTCCGTATCGAAAAGTCTTGGAAGGAATGGTTCAACCTAGATTCTCCAGAGCCTAATAGCTATGATATGCTCATGCTAAGAACAGGGACCAATATGCTCCATCGTAACCTGCTGAACTTTGTAAGAAACTCAAACTTCTCGATATCTACCAAGCTCAAGCTGTATGCTCAGTACAGAAAAAAGGGTGTATTTTCCTGGTTTTATAACGGATATAGAAGAGATCCCTATGTAGGGTGCACTTCTGTGAGAGTCTTTTGGAATACAATAGGACGTTCTTATATCTTATTTTCTTTGTTCTCCATTGTGGAAGAGATCTGGAAGAAGATTAGAAAA","9.10","6.98","41057","MIIPMNNKHPLPTPLVSIIIPVYNVEKYLYRCVKSILSQDYYDYEIILVDDGSTDGSGMICDELTEQHGHISVIHKPNGGQGSARNAGLNHAKGKYIWFIDSDDYISPHSLSVIMSQITQGDFDALFFPYIKSNGNILIGEAVGKYHAGVYRGQQLLLEGLVNMSMCTIVSLRSRWIDNRIFFREDIHFEDFEINPRVLKFLERAIFLDSNIIPYIYYTRLGSTMNQLDPQKRMRQTEDFLRIEKSWKEWFNLDSPEPNSYDMLMLRTGTNMLHRNLLNFVRNSNFSISTKLKLYAQYRKKGVFSWFYNGYRRDPYVGCTSVRVFWNTIGRSYILFSLFSIVEEIWKKIRK","141349 142401","TIGR ID: PG0118. Reported by Chen et al., 2004, to be highly divergent in ATCC 33277.","glycosyltransferase","Cytoplasm","Numerous hits in gapped BLAST to glycosyltransferases, e.g. residues 15-227 are 36% similar to the N-acetylglucosaminyltransferase from Streptococcus agalactiae (dbjBAA33749.1) and to the EpsI protein from Streptococcus thermophilus (U40830).","
InterPro
IPR001173
Domain
Glycosyl transferase, family 2
PF00535\"[17-182]TGlycos_transf_2
noIPR
unintegrated
unintegrated
G3DSA:3.90.550.10\"[14-234]TG3DSA:3.90.550.10
PTHR22916\"[22-351]TPTHR22916
SSF53448\"[14-259]TSSF53448


","BeTs to 14 clades of COG0463COG name: Glycosyltransferases involved in cell wall biogenesisFunctional Class: MThe phylogenetic pattern of COG0463 is AMTKYQVCEBRHujGPo---XNumber of proteins in this genome belonging to this COG is 8","***** PF00535 (Glycosyl transferases) with a combined E-value of 5.5e-12. PF00535A 45-55 PF00535B 94-103","Residues 15-86 are 59% similar to a (PROTEIN TRANSFERASE GLYCOSYLTRANSFERASE PUTATIVE) protein domain (PD000196) which is seen in O87182_STRAG.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Tue Feb 22 13:46:47 2005","Wed Feb 21 09:14:08 MST 2001","Tue Feb 22 13:46:47 2005","Thu Mar 29 18:37:27 MST 2001","Wed Feb 21 09:11:39 MST 2001","Wed Feb 21 09:11:39 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG0103 shows similarity to four glycosyl transferases: residues 12-143 are 32% similar to PG1637, residues 16-124 are 28% similar to PG0285, residues 14-111 are 32% similar to PG0676, and residues 13-152 are 29% similar to PG0309.","Thu Mar 29 18:37:27 MST 2001","Wed Feb 21 09:11:39 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 17 to 182 (E-value = 1.2e-43) place PG0103 in the Glycos_transf_2 family which is described as Glycosyl transferase (PF00535)","Thu Mar 29 18:37:27 MST 2001","34539983","","Chen T, Hosogi Y, Nishikawa K, Abbey K, Fleischmann RD, Walling J, Duncan MJ.Comparative whole-genome analysis of virulent and avirulent strains of Porphyromonas gingivalis.J Bacteriol. 2004 Aug;186(16):5473-9.PMID: 15292149","","Tue Feb 22 13:46:47 2005","","1","","2","PG0118" "PG0104","142440","143135","696","ATGCAGCAGATATTATTAGGGGGAGTGGAGGTATATCCCTTTACTTCAGCGGAAGAGCTTATCAGCTATGTATCAGGACATCCTGCCATTTTGGTGGCAATCAATGCAGAGAAAATCCTGCATGCTACAGACGAACTAAAAGCCATTTATAATCGCAATCTCGGCTATTCGGACGGAGCAGGTGCTGTGCTTGCTCTCAAAAAGAAGGGCCATCAGAATGCTTGTAAAATAGCCGGTTGCGAGCTTTGGCTTAAGATTATCGAGCGATACAGCCGAGAGAAAAGTTTTTACCTCGTGGGAGGCAAGCCGGAAGTTATTGAAGAGACAATTCAAAAGCTTAGAAAGGATTTCCCCCGGATAAATATAGTAGGATACCGAGATGGCTATCTTAAGGGTAACGATGATGAAGTCCTGATTGAAGATATTGCTGCTAAAAAGCCCGATGTGGTCTTTGTGGCCATGGGGTCTCCCAAGCAAGAACTGCTGATGGAGCGTATGCAAAGGGTACACCCTAACGCTATCTATCAAGGATTGGGCGGTAGTTTCGATGTATATACGGGGCGCGTAGAGCGTGCTCCGGAGTGGTGGATTCGCCACAATCTGGAGTTTGCCTATCGCCTTATCAAGCAGCCCAGTCGCATCAAGCGTCAGATACATTTAGTACGATTCCTGTTTAGAGTATTAACCAATAGAATA","10.10","8.35","26525","MQQILLGGVEVYPFTSAEELISYVSGHPAILVAINAEKILHATDELKAIYNRNLGYSDGAGAVLALKKKGHQNACKIAGCELWLKIIERYSREKSFYLVGGKPEVIEETIQKLRKDFPRINIVGYRDGYLKGNDDEVLIEDIAAKKPDVVFVAMGSPKQELLMERMQRVHPNAIYQGLGGSFDVYTGRVERAPEWWIRHNLEFAYRLIKQPSRIKRQIHLVRFLFRVLTNRI","142440 143135","TIGR ID: PG0119","UDP-N-acetyl-D-mannosaminuronic acid transferase","Cytoplasm","Several hits in gapped BLAST to UDP-N-acetyl-D-mannosaminuronic acid transferases, e.g., residues 31-224 are 46% similar to the enzyme from S.typhimurium (gb|AAF33458.1). Residues 2-228 are 34% similar to the enzyme from S.pneumoniae (AF094575).","
InterPro
IPR004629
Family
Glycosyl transferase WecB/TagA/CpsF
PF03808\"[47-217]TGlyco_tran_WecB
TIGR00696\"[47-223]TwecB_tagA_cpsF


","BeTs to 5 clades of COG1922COG name: Teichoic acid biosynthesis proteinsFunctional Class: MThe phylogenetic pattern of COG1922 is ------vCeb-------l---Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 31-224 are 46% similar to a (TRANSFERASE ACID) protein domain (PD007627) which is seen in WECG_ECOLI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Apr 24 13:30:42 MDT 2001","Wed Feb 21 09:22:04 MST 2001","Tue Apr 24 13:30:42 MDT 2001","","Wed Feb 21 09:22:04 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Feb 21 09:22:04 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 47 to 217 (E-value = 1.8e-57) place PG0104 in the Glyco_tran_WecB family which is described as Glycosyl transferase WecB/TagA/CpsF family (PF03808)","Tue Apr 24 13:30:42 MDT 2001","34539984","","","","","","1","","2","PG0119" "PG0105","143144","144301","1158","ATGAAAAAAGTGATGTTGGTCTTCGGGACGAGACCCGAAGCGATCAAGATGGCTCCGCTGGTGAAGGAATTTCAAGCGAGAGCAAGTGAGTTTGATACCATTGTCTGTGTGACGGGTCAGCATAGAGAGATGCTCAAGCAAGTGCTGGAGCTATTTGATATCAAGCCCGATTATGACTTGGAGATCATGAAGGAGGGGCAGGATCTCTATGACGTAACTACACGTGTGCTGTTGGGTATGCGTGAAGTACTCAAGAAGACAAAGCCCGATGTAGTACTCGTACACGGCGATACGACTACAAGTACTGCCGCTGCATTGGCTGCTTTCTATCAACAGATTCCGGTAGGACATGTGGAGGCAGGGCTTCGCACGCACAACATTTACAGCCCATGGCCGGAAGAGATGAACCGTCAGCTCACCGGTAGGATGGCTACCTATCACTTTGCTCCTACGGAATTGAGTCGGGACAATTTACTTGCAGAAGGGATTGCTACAGATCGTATATTTATTACAGGAAATACAGTAATCGATGCTCTACAACAAGTCGTTACACGAGTTAAGGGTAATGCCGATTTGCGAAATCAAGTGTCTCGAAAGCTACTTCAATTTGGATATGATGTGAATCGTTTAGAGGCTGGGCGTAGACTTGTTCTTATCACAGGGCATCGCAGAGAAAACTTTGGCGAAGGATTCCTTAATATCTGCCGTGCTATTCAAACTCTTAGCAAGCGTTTCCCGGAGGTAGACTTTGTTTATCCCATGCACCTTAACCCCAATGTGCGTAAGCCTATTCGCGAGATCTTCGGCGATAACCTTGGAGGCTTGGATAATCTCTTTTTTATTGAGCCGCTGGAGTATTTGCAGTTTGTTACGCTCATGGATCGTTCGTCCATTGTTCTGACTGATAGTGGAGGTATTCAGGAAGAAGCTCCAGGGTTAGGCAAACCTGTATTGGTAATGCGAGATACTACGGAGCGTCCCGAAGCGGTGAAAGCAGGAACCGTGAAACTTGTAGGGACAGATTATAATCAAATCGTCGACAATGTCGAAAAACTACTGACAGACAACGCCGCATATGCCGAAATGAGCAGAGCCAATAATCCGTACGGTGACGGAAAAGCATGCTCATATATAGCGGATGCTCTTACTCGATGCATT","6.40","-2.47","43344","MKKVMLVFGTRPEAIKMAPLVKEFQARASEFDTIVCVTGQHREMLKQVLELFDIKPDYDLEIMKEGQDLYDVTTRVLLGMREVLKKTKPDVVLVHGDTTTSTAAALAAFYQQIPVGHVEAGLRTHNIYSPWPEEMNRQLTGRMATYHFAPTELSRDNLLAEGIATDRIFITGNTVIDALQQVVTRVKGNADLRNQVSRKLLQFGYDVNRLEAGRRLVLITGHRRENFGEGFLNICRAIQTLSKRFPEVDFVYPMHLNPNVRKPIREIFGDNLGGLDNLFFIEPLEYLQFVTLMDRSSIVLTDSGGIQEEAPGLGKPVLVMRDTTERPEAVKAGTVKLVGTDYNQIVDNVEKLLTDNAAYAEMSRANNPYGDGKACSYIADALTRCI","143144 144301","TIGR ID: PG0120","UDP-N-acetylglucosamine 2-epimerase (UDP-GlcNAc 2-epimerase)","Cytoplasm","Numerous hits in gapped BLAST to acetylglucosamine epimerases, e.g. residues 1-382 are 69% similar to the UDP-GlcNAc 2-epimerase from Bacteroides fragilis (AF125164). This sequence is similar to BT0601.","
InterPro
IPR003331
Family
UDP-N-acetylglucosamine 2-epimerase
PTHR18964:SF2\"[27-382]TEpimerase_2
PF02350\"[22-383]TEpimerase_2
TIGR00236\"[2-386]TwecB
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.2000\"[3-226]TG3DSA:3.40.50.2000
PTHR18964\"[27-382]TPTHR18964
SSF53756\"[1-382]TSSF53756


","BeTs to 8 clades of COG0381COG name: UDP-N-acetylglucosamine 2-epimeraseFunctional Class: MThe phylogenetic pattern of COG0381 is -mtk--Vceb----------xNumber of proteins in this genome belonging to this COG is 1","***** BP03764 (2-EPIMERASE PROTEIN UDP-N-ACETYLGLUCOSAMINE ISOMERASE) with a combined E-value of 1.6e-132. BP03764A 3-35 BP03764B 41-68 BP03764C 104-138 BP03764D 140-174 BP03764F 254-301 BP03764G 302-328 BP03764H 344-380 BP03764F 250-297","Residues 1-44 are 70% similar to a (2-EPIMERASE UDP-N-ACETYLGLUCOSAMINE) protein domain (PD003764) which is seen in Q9ZFT1_STRPN.Residues 56-382 are 56% similar to a (2-EPIMERASE UDP-N-ACETYLGLUCOSAMINE) protein domain (PD004092) which is seen in EPSC_BURSO.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Mon May 14 19:15:31 MDT 2001","Tue Dec 2 17:03:37 2003","Tue Apr 24 13:39:23 MDT 2001","Wed Feb 21 11:38:57 MST 2001","Wed Feb 21 11:38:57 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Feb 21 11:38:57 MST 2001","-72% similar to PDB:1F6D THE STRUCTURE OF UDP-N-ACETYLGLUCOSAMINE 2-EPIMERASE FROM E. COLI. (E_value = 7.8E_119);-72% similar to PDB:1VGV Crystal structure of UDP-N-acetylglucosamine_2 epimerase (E_value = 7.8E_119);-66% similar to PDB:1O6C Crystal structure of UDP-N-acetylglucosamine 2-epimerase (E_value = 1.5E_101);-58% similar to PDB:1V4V Crystal Structure Of UDP-N-Acetylglucosamine 2-Epimerase From Thermus Thermophilus HB8 (E_value = 2.7E_71);","","","Residues 22 to 383 (E-value = 2.8e-170) place PG0105 in the Epimerase_2 family which is described as UDP-N-acetylglucosamine 2-epimerase (PF02350)","Tue Apr 24 13:39:23 MDT 2001","34539985","","","","","","1","","2","PG0120" "PG0106","144608","144871","264","ATGAACAAGACAGATTTTATTGCAGCTGTAGCTGAAAAGGCCAACCTCACAAAGGCTGATGCCCAGAGAGCAGTAAATGCATTTGCAGAAGTTGTAACAGAACAGATGAATGCCGGAGAGAAAATCGCTCTCATCGGATTCGGTACTTTCTCAGTGAGCGAGCGTGCTGCTCGCAAAGGCATTAATCCTAAGACGAAAAAATCTATTTCTATCCCTGCCCGTAAGGTTGTTCGTTTCAAACCGGGCTCTACTTTGGAACTTAAG","11.00","7.98","9461","MNKTDFIAAVAEKANLTKADAQRAVNAFAEVVTEQMNAGEKIALIGFGTFSVSERAARKGINPKTKKSISIPARKVVRFKPGSTLELK","144608 144871","TIGR ID: PG0121","DNA-binding protein (HU-related)","Cytoplasm, Periplasm","Numerous significant hits to DNA-binding protein in gapped BLAST; e.g. residues 1-86 are 54% similar to dbj|BAA07273.1| DNA binding protein HU of Bacillus stearothermophilus, residues 1-86 are 54% similar to dbj|BAB05028.1| non-specific DNA-binding protein II (HB) (HU) of Bacillus halodurans, residues 1-86 are 51% similar to pir||DNZRH3 DNA-binding protein of Rhizobium leguminosarum.","
InterPro
IPR000119
Family
Histone-like bacterial DNA-binding protein
PD000945\"[9-85]TBac_DNAbind
PR01727\"[40-55]T\"[58-71]T\"[74-88]TDNABINDINGHU
G3DSA:4.10.520.10\"[1-85]THist_DNA_bd_bac
PF00216\"[1-88]TBac_DNA_binding
SM00411\"[1-88]TBHL
PS00045\"[46-65]?HISTONE_LIKE
InterPro
IPR010992
Family
IHF-like DNA-binding
SSF47729\"[1-86]TIHF_like_DNA_bnd


","BeTs to 11 clades of COG0776COG name: Histone-like DNA-binding proteinFunctional Class: LThe phylogenetic pattern of COG0776 is -----QvcEBrHujgpolinXNumber of proteins in this genome belonging to this COG is 3","***** IPB000119 (Bacterial histone-like DNA-binding protein) with a combined E-value of 5.4e-22. IPB000119 39-88","Residues 2-86 are 54% similar to a (DNA-BINDING DNA PROTEIN CONDENSATION FACTOR INTEGRATION) protein domain (PD000945) which is seen in DBH_BACST.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Feb 21 11:44:20 MST 2001","Tue Feb 20 12:36:45 MST 2001","Tue Feb 20 12:36:45 MST 2001","Tue Feb 20 12:36:45 MST 2001","Tue Feb 20 12:36:45 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1-81 are 32% similar to PG1111, a predicted histone-like DNA binding protein, IHFA, IHFB, or DBH. ","Tue Feb 20 12:36:45 MST 2001","Tue Feb 20 12:36:45 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 1 to 88 (E-value = 1.2e-36) place PG0106 in the Bac_DNA_binding family which is described as Bacterial DNA-binding protein (PF00216)","Tue Apr 24 13:44:42 MDT 2001","34539986","","","","","","1","","","PG0121" "PG0107","145127","145642","516","ATGACGCTTACGGCGCAAAAGAATAGTTGGTGGGTGGGTGCCCATGCCGGACGCGAGTACTTCAACAACACAAGTGAGGATATGAAGAAAGGATGGAATACCGGAGTAGTCCTGCGCTACTATTTCTCCGATCGAATATATTCTTTGGCTACACTCAATTATGGATTCGCTTCTTCTTTATCCCCTTCCGGCTATTTCGATGAGCTTGGTAACAGTCCCAATGCGCGCTTCAGACGCCATAGTATTTTGCCGGCAGTGGGATTAGGGTATGAATTTTTCCAAGGCGATTTTTATTCCTGTTATGCTCAAGGCGGTGTCGGATACGGAATGGAATACAACTCAGTATCCTATCCACAGGAGTATGACGTTTCTGTAAAGCGTTTTGGCTGGTTGGCAGAGTTGGGTGGCGATTATTTCCTTCGCGACAATTTGTCACTTGGTATCTCCGTTGCACACCTGCGAGTGGGATGGAGAAACAATTGGACGGCCAACGTTAAGTTGTCGATTTGTCTTCTT","8.10","1.61","19489","MTLTAQKNSWWVGAHAGREYFNNTSEDMKKGWNTGVVLRYYFSDRIYSLATLNYGFASSLSPSGYFDELGNSPNARFRRHSILPAVGLGYEFFQGDFYSCYAQGGVGYGMEYNSVSYPQEYDVSVKRFGWLAELGGDYFLRDNLSLGISVAHLRVGWRNNWTANVKLSICLL","145070 145642","TIGR ID: PG0123","hypothetical protein","Outer membrane, Extracellular","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
SSF56925\"[4-171]TSSF56925


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Tue Jun 12 17:28:07 MDT 2001","","Tue Jun 12 17:28:07 MDT 2001","Tue Jun 12 17:28:07 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Tue Jun 12 17:28:07 MDT 2001","Tue Jun 12 17:28:07 MDT 2001","","","Fri Feb 16 10:18:25 MST 2001","","Fri Feb 16 10:18:25 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Feb 16 10:18:25 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Jun 12 17:28:07 MDT 2001","34539987","","","","","","1","","","PG0123" "PG0108","146324","145707","618","ATGGCCGAAGATTCCTACCTCACGATCAGTGCTCCCTCGGAAGCACAGTACACGGAGAAACGCAGCCGCTTCCTGGCTTTCGCCTATCCTGTAAAGTCGGAAGAGGAGGCCCTGTCGCTTGTGGCCGATCTGCGTCGCCGCTACTTCGATGCACGCCATGTATGCTGGGCATACAAGCTGGGAGCCAAAGGCGAACGCACACGATCCAATGACGACGGAGAGCCATCGGGGACTGCCGGCAAACCCATCCTCGGGCAGATCACCTCATTGGGGCTTACGCAGGTATTCGTCGCAGTAGTGCGCTACTTCGGAGGTGTCAAGCTGGGCACGAGCGGTCTTATCGTTGCTTATCGCGAAGCGGCTCGCGAAGCCCTCGAAGCAGCCGACCGGAAGGAAGAGATCCTGTATGAAGAACTGACTATCGCCTTCGAATATCCTTTGCTGGGAGAAGTGATGCGACTGGTGAAAGATGCCGGAGCCTCCATCCGCTCGCAGGATTTTGTCGAGAATTGCAGGCTTACCGTCAGCCTTCGCGGCAACGATGCCGCCATCCTGCGAGATCGCCTCTCAGCCATCTACGGCGTCGCCCTCGTCCAAGACGAAGATTTTCTCAACGGT","5.00","-4.84","22784","MAEDSYLTISAPSEAQYTEKRSRFLAFAYPVKSEEEALSLVADLRRRYFDARHVCWAYKLGAKGERTRSNDDGEPSGTAGKPILGQITSLGLTQVFVAVVRYFGGVKLGTSGLIVAYREAAREALEAADRKEEILYEELTIAFEYPLLGEVMRLVKDAGASIRSQDFVENCRLTVSLRGNDAAILRDRLSAIYGVALVQDEDFLNG","146324 145707","TIGR ID: PG0124","conserved hypothetical protein","Cytoplasm","Several hits in gapped BLAST to bacterial hypothetical proteins, e.g., residues 5-177 are 42% similar to a hypothetical from N.meningiditis (AL162752) and 34% similar to a hypothetical from C. histolyticum (AB014075).","
InterPro
IPR001498
Domain
Protein of unknown function UPF0029, N-terminal
PTHR16301\"[18-153]TUPF0029
PF01205\"[19-126]TUPF0029
InterPro
IPR009022
Domain
Elongation factor G, III and V
SSF54980\"[135-189]TEFG_III_V
noIPR
unintegrated
unintegrated
G3DSA:3.30.230.30\"[5-134]TG3DSA:3.30.230.30
SSF54211\"[2-134]TSSF54211


","BeTs to 6 clades of COG1739COG name: Uncharacterized ACR, YigZ/UPF0029 familyFunctional Class:  SThe phylogenetic pattern of COG1739 is ----Y-v-eb-huj--o----Number of proteins in this genome belonging to this COG is 1","***** IPB001498 (Uncharacterized protein family UPF0029) with a combined E-value of 1e-13. IPB001498 82-122","Residues 20-109 are 44% similar to a (PROTEIN INTERGENIC REGION PROLINE) protein domain (PD006754) which is seen in Q9ZNK1_CLOHI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Feb 21 12:42:15 MST 2001","Wed Feb 21 12:42:15 MST 2001","Wed Feb 21 12:42:15 MST 2001","Wed Feb 21 12:42:15 MST 2001","Wed Feb 21 12:42:15 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Feb 21 12:42:15 MST 2001","-66% similar to PDB:2CVE Crystal structure of a conserved hypothetical protein TT1547 from thermus thermophilus HB8 (E_value = 2.2E_19);-47% similar to PDB:1VI7 Crystal structure of an hypothetical protein (E_value = 7.2E_18);-50% similar to PDB:1R5B Crystal structure analysis of sup35 (E_value = 7.2E_18);-50% similar to PDB:1R5N Crystal Structure Analysis of sup35 complexed with GDP (E_value = 7.2E_18);-50% similar to PDB:1R5O crystal structure analysis of sup35 complexed with GMPPNP (E_value = 7.2E_18);","","","Residues 19 to 126 (E-value = 6.6e-49) place PG0108 in the UPF0029 family which is described as Uncharacterized protein family UPF0029 (PF01205)","Wed Feb 21 12:42:15 MST 2001","34539988","","","","","","1","","","PG0124" "PG0109","146876","146331","546","ATGATCATAGCAAGGGAAAAACGGCGCAACAATATCGCCGAGTACGTCCTCTACATGTGGCAGATAGAGGATCTTATACGTGCCAACGAACTGGATATGCAGCGGCTTCGCGCCACTGTAATTGCCCAATACCGGCAAGATACGGAGACGACCGCCGAGATAGACCGCTGGTATGCCGAGCTGGTGGAGATGATGCTGACCGAGGGCGTTCGCGAGCAGGGGCATATCAATATCGTCCGCATAGCCATCATGCAAATGGAAGAGATACACTCACGACTGATGGCGGACCCCAAAGAGATGATTTATCAAGGACTCTACTATCAGGTGCTCCCTGCCATCGTACAGCTTAGAGCCAAGAGTGCAGGGAGCAATACGGGAGAGATAGAGACTTGCCTGACTGCCATATACGGTCTGCTGACCCTGCGCTTGCAGAAAAAGGAAGTGAGCGAAGAGACGCTCGCCAGTATCAAACAAATGAGTACGCTCCTCTCCGTCCTGTCCGAAAAGTTTGCCGCCCGGGAGGAAGGTACAGATGAGGCTCTCCTT","4.90","-6.55","21016","MIIAREKRRNNIAEYVLYMWQIEDLIRANELDMQRLRATVIAQYRQDTETTAEIDRWYAELVEMMLTEGVREQGHINIVRIAIMQMEEIHSRLMADPKEMIYQGLYYQVLPAIVQLRAKSAGSNTGEIETCLTAIYGLLTLRLQKKEVSEETLASIKQMSTLLSVLSEKFAAREEGTDEALL","146876 146331 [Delay by 81 142 82 0]","TIGR ID: PG0125","conserved hypothetical protein","Cytoplasm","Its nearest neighbor in the NR database is gi:29347141 from Bacteroides thetaiotaomicron VPI-5482.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Mar 1 10:04:25 2005","Tue Mar 1 10:04:25 2005","Wed Feb 21 12:43:23 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Feb 21 12:43:23 MST 2001","-48% similar to PDB:1DKY THE SUBSTRATE BINDING DOMAIN OF DNAK IN COMPLEX WITH A SUBSTRATE PEPTIDE, DETERMINED FROM TYPE 2 NATIVE CRYSTALS (E_value = );-48% similar to PDB:1DKZ THE SUBSTRATE BINDING DOMAIN OF DNAK IN COMPLEX WITH A SUBSTRATE PEPTIDE, DETERMINED FROM TYPE 1 NATIVE CRYSTALS (E_value = );-48% similar to PDB:1DKX THE SUBSTRATE BINDING DOMAIN OF DNAK IN COMPLEX WITH A SUBSTRATE PEPTIDE, DETERMINED FROM TYPE 1 SELENOMETHIONYL CRYSTALS (E_value = );-50% similar to PDB:1ZCD Crystal structure of the Na+/H+ antiporter NhaA (E_value = );-51% similar to PDB:1BPR NMR STRUCTURE OF THE SUBSTRATE BINDING DOMAIN OF DNAK, MINIMIZED AVERAGE STRUCTURE (E_value = );","","","No significant hits to the Pfam 11.0 database","Wed Feb 21 12:43:23 MST 2001","34539989","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Tue Mar 1 10:05:51 2005","","1","","","PG0125" "PG0110","148108","146876","1233","ATGAGACAGCATTTATCTCTATTTCCTTTTATCTTGTTTCTGCTTCTTGCCTTCTCTTATGTCGGTTGCAGAACAGTCCGACAAACACCTAAGCAGTCGGAACGGTACGTCGTAGTCCTGTCTTTGGACGGCTTCCGACCGGACTATACCGATCGGGCACGTACACCGGCGTTGGATCGGATGGCACAGGAGGGATTGAGCGGGTCGCTCCAACCATGCTTCCCCTCGCTTACATTTCCCAATCATTACAGCATGGCTACGGGGCTTTACCCCGATCATCACGGTATCGTAGCCAATGAGTTTGTGGATTCGCTACTGGGCATCTTTCGTATATCCGACCGAAAAGCCGTGGAGACCCCCGGATTTTGGGGCGGCGAGCCGGTTTGGAATACGGCCGCACGCCAAGGCATCCGTACCGGTGTCTACTTTTGGGTAGGATCCGAAACGGCTGTGAACGGAAATCGGCCGTGGCGGTGGAAAAAATTCTCCTCCACCGTTCCGTTTCGTGACCGTGCCGACTCCGTCATCGCGTGGCTCGGACTGCCCGAAAAGGAGCGACCGCGCTTGCTCATGTGGTACATCGAGGAGCCGGATATGATCGGACACAGCCAAACGCCCGAAAGCCCGCTGACACTGGCAATGGTAGAGCGGTTGGACAGTGTGGTCGGCTATTTCCGCAAGCGGTTGGACTCTCTGCCCATAGCCGCACAGACCGACTTCATCATAGTATCCGATCACGGTATGGCCACGTACGAAAATGAGAAATGTGTCAATCTGTCGCATTATCTGCCTGCGGACAGTTTCCTCTACATGGCCACCGGGGCCTTCACCCACTTGTACCCGAAGCCCTCCTATACCGAGCGAGCCTATGAGATCCTGCGGGCCATTCCACATATATCGGTTTACCGCAAGGGGGAGGTGCCCAAGCGTTTGCGCTGTGGCACCAATCCTCGTTTGGGCGAACTGGTCGTGATTCCGGACATAGGCTCCACCGTCTTTTTCGCAATAAATGAAGACGTTCGTCCGGGAGCGGCACATGGCTATGACAACCAAGCACCGGAAATGCGGGCTTTACTCCGGGCTGTCGGACCCGATTTCCGTCCGGGCAGTAGGGTGGAAAACCTGCCGAATATCACCATCTATCCGCTCATATGCAGGCTGTTGGGTATAGAGCCTGCACCCAACGATGCGGACGAAACGTTGCTGAACGGCCTGATCCGAGACAAACGACCA","7.80","3.19","46448","MRQHLSLFPFILFLLLAFSYVGCRTVRQTPKQSERYVVVLSLDGFRPDYTDRARTPALDRMAQEGLSGSLQPCFPSLTFPNHYSMATGLYPDHHGIVANEFVDSLLGIFRISDRKAVETPGFWGGEPVWNTAARQGIRTGVYFWVGSETAVNGNRPWRWKKFSSTVPFRDRADSVIAWLGLPEKERPRLLMWYIEEPDMIGHSQTPESPLTLAMVERLDSVVGYFRKRLDSLPIAAQTDFIIVSDHGMATYENEKCVNLSHYLPADSFLYMATGAFTHLYPKPSYTERAYEILRAIPHISVYRKGEVPKRLRCGTNPRLGELVVIPDIGSTVFFAINEDVRPGAAHGYDNQAPEMRALLRAVGPDFRPGSRVENLPNITIYPLICRLLGIEPAPNDADETLLNGLIRDKRP","148141 146876 [Bad Olap 143 122 1]","Similarities strongly biased towards eukaryotic and plant enzymes.TIGR ID: PG0126","alkaline phosphodiesterase (eukaryotic)","Inner membrane, Cytoplasm, Periplasm","Several hits in gapped BLAST to phosphodiesterases, e.g. residues 37-407 are 33% similar to the ectonucleotide pyrophosphatase/phosphodiesterase 3 in humans (gb|AAC51813.1) and are 32% similar to the alkaline phosphodiesterase in rats (gb|AAB61535.1). ","
InterPro
IPR001952
Family
Alkaline phosphatase
G3DSA:3.40.720.10\"[37-262]TAlk_phosphtse
InterPro
IPR002591
Family
Type I phosphodiesterase/nucleotide pyrophosphatase
PF01663\"[35-349]TPhosphodiest
noIPR
unintegrated
unintegrated
PTHR10151\"[58-396]TPTHR10151
SSF53649\"[20-389]TSSF53649


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 37-332 are 36% similar to a (PHOSPHODIESTERASE PROTEIN I HYDROLASE ALKALINE) protein domain (PD003227) which is seen in O69013_ZYMMO.Residues 346-396 are 47% similar to a (PHOSPHODIESTERASE I PROTEIN HYDROLASE) protein domain (PD006427) which is seen in O14638_HUMAN.","","Tue Jun 12 17:32:49 MDT 2001","","Tue Jun 12 17:32:49 MDT 2001","Tue Jun 12 17:32:49 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Tue Jun 12 17:32:49 MDT 2001","Tue Jun 12 17:32:49 MDT 2001","","Wed Feb 21 12:52:23 MST 2001","Wed Feb 21 12:52:23 MST 2001","Tue Jun 12 17:36:05 MDT 2001","Wed Feb 21 12:52:23 MST 2001","","Wed Feb 21 12:52:23 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Feb 21 12:52:23 MST 2001","-49% similar to PDB:2GSN Structure of Xac Nucleotide Pyrophosphatase/Phosphodiesterase (E_value = 4.3E_62);-49% similar to PDB:2GSO Structure of Xac Nucleotide Pyrophosphatase/Phosphodiesterase in Complex with Vanadate (E_value = 4.3E_62);-49% similar to PDB:2GSU Structure of Xac Nucleotide Pyrophosphatase/Phosphodiesterase in Complex with AMP (E_value = 4.3E_62);","","","Residues 35 to 390 (E-value = 2.3e-79) place PG0110 in the Phosphodiest family which is described as Type I phosphodiesterase / nucleotide pyrophosphatase (PF01663)","Mon May 21 16:52:08 MDT 2001","34539990","","","","","","1","","","PG0126" "PG0111","148325","148020","306","ATGACATTTTCCCGACCGAAAAGCCGTGGAGACCCCCGGATTTTGGAGAGGTTGGAAGGGTCGGCTGTGGGTATTCCTGTGATTTTTTACTCCCGATGGTATGGTTTCACTCCCGACGACACGCTGAAAATCATCGGCTCAAAAACCGATCTGCTTACAGTAATGAAAGAGGAATCCCTTACCTTTGACGGCATCAAATCGAAAGATTTTTATAAAAATGAGACAGCATTTATCTCTATTTCCTTTTATCTTGTTTCTGCTTCTTGCCTTCTCTTATGTCGGTTGCAGAACAGTCCGACAAACACC","8.60","1.89","11522","MTFSRPKSRGDPRILERLEGSAVGIPVIFYSRWYGFTPDDTLKIIGSKTDLLTVMKEESLTFDGIKSKDFYKNETAFISISFYLVSASCLLLCRLQNSPTNT","148325 148020 [Shorter 142 122 98]","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
noIPR
unintegrated
unintegrated
tmhmm\"[75-95]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Feb 21 12:54:05 MST 2001","","Wed Feb 21 12:54:05 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Feb 21 12:54:05 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Feb 21 12:54:05 MST 2001","","","","","","","1","","","" "PG0112","148690","149724","1035","ATGGCAGATCGTAGAAGAACCGATGACAATAAGGGTGCGAGAGAGGTGGTATTGCTGCTGAATATCGGCTCGCCGGACAGCCCTGAGGAGAAGGACGTGGCGCGCTACCTCAATTCTTTTCTGACCGACAGGAGGATCATCACCTTGCCTTTTCTCCTGAGACAGTTACTCGTGAGAGGTATCATCACTCCTTTCAGAAAGAAAAGTTCGGCACAAAAATATCGGACCGTTTGGGACGAAAGCACCCGGTCTTTCCCCCTCATATCGCATACGAAAGCCATAGCCCGGGCACTGGCACATACGGGCAGAGAAGTCCATGTAGCCATGCGCTACGGCAAGCCGGCTGTGGCCGATGTGCTGAAGGAGCTGCCACACGGCCGAAGCCTCGTCGTCCTCCCGCTCTTCCCACACTACGCCATGAGCAGCTACGAGACGGCCGTGGAGCATTGCAAGGCCGAAATCCGCCGCCTTTGTCCGAATCTTTCCTTCCGCGTCGTGCAGCCTTTCTACGCACACGAAGCCTATATTCGTGTCCTTGCCGATAACATCAGACCCTATCTGACGAAGCCTTTCGACAAGCTCATTCTTTCCTATCACGGCATTCCCCGCGATCATTTGGACAAGACCACCCGACAGGCTTTGAATCTCCGGCATCCCGAAGGATGCTGCACGGAGGAGGATCCTACGGCAAACGTCTGCTACCGCTATCAGACTTACAGGACGACGGCTCTCATCCGCGAGGCACTTGGCTTGGCCGAGGAGCAGGTGGAGCAGGTGTTCCAGTCACGTGTAGGCCATACCGAATGGCTGCGCCCCTATTTGATCGAACGACTGTCCGCTTGGCCGCAAGAGGAAACAAAACGTATCCTCATAGCCTGCCCCTCCTTCGTGTGCGACTGTCTGGAGAGCCTCGAAGAAGTAGCCGATCACGGACAAAGCATTTTCAAAAAAGCAGGAGGTGCGGATTTCACTTACATCCCCTGTCTCAATAGCGGGGCGAATTGGATCGATGCTCTCCGAAACATTTTAGAGGAA","8.20","6.48","39548","MADRRRTDDNKGAREVVLLLNIGSPDSPEEKDVARYLNSFLTDRRIITLPFLLRQLLVRGIITPFRKKSSAQKYRTVWDESTRSFPLISHTKAIARALAHTGREVHVAMRYGKPAVADVLKELPHGRSLVVLPLFPHYAMSSYETAVEHCKAEIRRLCPNLSFRVVQPFYAHEAYIRVLADNIRPYLTKPFDKLILSYHGIPRDHLDKTTRQALNLRHPEGCCTEEDPTANVCYRYQTYRTTALIREALGLAEEQVEQVFQSRVGHTEWLRPYLIERLSAWPQEETKRILIACPSFVCDCLESLEEVADHGQSIFKKAGGADFTYIPCLNSGANWIDALRNILEE","ferrochelatase","MD pathway protoporphyrin + Fe(2+) = protoheme + 2 H(+). Pathway: last step in protoheme biosynthesis.Roper et al. (2000) assign a role in cobalamin biosynthesis to this protein. See in this regard PG193 (cbiC), PG0192 (cbiET), PG0191 (cbiGF), PG0190 (cbiJD), PG1040 (cbiA), PG1038 (cbiP), PG1037 (cobD), PG1036 (cobD/cbiB), PG0631 (cobU), PG0632 (cobT), PG0633 (cobS), PG0434 (hemN/F), PG0438 (cbiL), PG0602 (cbiK), PG0193 (cbiH).TIGR ID: PG0127","ferrochelatase","Cytoplasm","This sequence is orthologous to CT485.Numerous significant hits in gapped BLAST to ferrochelatases; e.g. residues 17-344 are 36% similar to AF314196 of Pseudomonas fluorescens, residues 17-339 are 37% similar to AE004879 of Pseudomonas aeruginosa, residues 14-345 are 36% similar to AL162754 of N. meningitidis.","
InterPro
IPR001015
Family
Ferrochelatase
PD002792\"[19-345]TFerrochelatase
PTHR11108\"[17-207]T\"[234-345]TFerrochelatase
PF00762\"[14-345]TFerrochelatase
TIGR00109\"[10-344]ThemH
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.1400\"[11-218]TG3DSA:3.40.50.1400
SSF53800\"[11-345]TSSF53800


","BeTs to 8 clades of COG0276COG name: Protoheme ferro-lyase (ferrochelatase)Functional Class: HThe phylogenetic pattern of COG0276 is ----yq-cebrhuj----inxNumber of proteins in this genome belonging to this COG is 1","***** IPB001015 (Ferrochelatase) with a combined E-value of 5.1e-19. IPB001015A 16-35 IPB001015B 194-207 IPB001015C 260-276 IPB001015D 289-310","Residues 17-330 are 35% similar to a (FERROCHELATASE HEME BIOSYNTHESIS LYASE) protein domain (PD002792) which is seen in HEMZ_ECOLI.","","Tue Jun 12 17:33:57 MDT 2001","","Tue Jun 12 17:37:33 MDT 2001","Tue Jun 12 17:37:33 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Tue Jun 12 17:37:33 MDT 2001","Tue Jun 12 17:37:33 MDT 2001","Wed Mar 22 10:12:34 MST 2000","Mon Jun 4 14:08:38 MDT 2001","Wed Mar 22 10:12:34 MST 2000","Tue Jun 12 17:39:42 MDT 2001","Mon Mar 12 13:49:22 MST 2001","Wed Feb 21 12:57:16 MST 2001","Wed Feb 21 12:57:16 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Feb 21 12:57:16 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 14 to 345 (E-value = 1.4e-54) place PG0112 in the Ferrochelatase family which is described as Ferrochelatase (PF00762)","Mon Mar 12 13:49:22 MST 2001","34539991","","Roper JM, Raux E, Brindley AA, Schubert HL, Gharbia SE, Shah HN, Warren MJ. The enigma ofcobalamin (Vitamin B12) biosynthesis in Porphyromonas gingivalis. Identification and characterization of a functional corrin pathway. J Biol Chem. 2000 Dec 22;275(51):40316-23. PMID: 11007789","","Mon Jun 4 14:08:38 MDT 2001","","1","","3","PG0127" "PG0113","149734","150705","972","ATGCTCAGTTATCATACCGATATACCGACAGACCTGCCCCTCCTGAGGCAAGCCGTCGAAGCCATCCGCCGGGAAGAATCCGGCGGTGCCGTACCCGACTCCGATCGGCCGAGGGTGATATACGAGGCGCGCAACCGGCTTTACGCCATCCGTACCGCACAGGGAGAGCAGGTGGTGAAGAGCTTCCGGATCCCTATTGCCATTCAGCGCGTGGTCTACTCATTCTTCCGCCCCTCGAAGGCTGCTCGCTCTTATCGCAACGCCATACGGCTGGGGCGATGCGGCATCGGCACTCCGCGACCGTCGGGCTATGCCATCGAACGCGAAAAAGGGCTTCTGTGCAGGAGCTACTACGTCTGCGAAAGCATGCACGACTGTCGGGATATTCGTCTCTCCATGCAGGGAGTGGAAGGAGGCGAGGCCTTGCTCCGTGCGCTGGCCGGATTCATCGCCCGAATGCACCGAGCAGGCATTCATCACATTGATTTATCGCCGGGCAACGTACTGTATCGGACAGACGAGAAAGGCGAGTATTCGTTCTACCTCATAGACCTGAACCGGATGAAGTTCTACGACAAGCCGATTGTGGGGCGGAAAGCCTATGCCAACTTTGCACGTCTGAGCTTTTGTCCGGCAGTGAGCAAGCAGCTTGCCGAATATTATGCAGAGGCACAGGGCTTGAATACGGACGGAGTGGTCCAAGGGGTACAAAGCGAATCGGATCGGTTCTTCCGCAGCAAAGTCCGCAAGTATGCTCGCAAGGCATTGGTGCGCGAACAAAAGCGAATGAGCCGCTCCGCTTTCCGTCGGGCATATATCCGCTATCGCTCGGTACGCCTTATCCGAAAACTCACGGGCTGCACCCGTCTCTTCCGTATCGAGAACGATCTGTACACATCCTATCTTGAAGTGGGCGACCTGCGCCATACACTGAAAAGAGCCGAAGGATATTCCTCGCCGAAAAACGTTCAA","10.90","27.17","37307","MLSYHTDIPTDLPLLRQAVEAIRREESGGAVPDSDRPRVIYEARNRLYAIRTAQGEQVVKSFRIPIAIQRVVYSFFRPSKAARSYRNAIRLGRCGIGTPRPSGYAIEREKGLLCRSYYVCESMHDCRDIRLSMQGVEGGEALLRALAGFIARMHRAGIHHIDLSPGNVLYRTDEKGEYSFYLIDLNRMKFYDKPIVGRKAYANFARLSFCPAVSKQLAEYYAEAQGLNTDGVVQGVQSESDRFFRSKVRKYARKALVREQKRMSRSAFRRAYIRYRSVRLIRKLTGCTRLFRIENDLYTSYLEVGDLRHTLKRAEGYSSPKNVQ","149734 150705","TIGR ID: PG0128","hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR008266
Active_site
Tyrosine protein kinase, active site
PS00109\"[158-170]?PROTEIN_KINASE_TYR
InterPro
IPR010440
Family
Lipopolysaccharide kinase
PF06293\"[32-221]TKdo
InterPro
IPR011009
Domain
Protein kinase-like
SSF56112\"[20-192]TKinase_like


","BeTs to 6 clades of COG0515COG name: Serine/threonine protein kinasesFunctional Class:  TThe phylogenetic pattern of COG0515 is amtkYq-C-BR---gp-lIN-Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Feb 21 13:02:16 MST 2001","","Wed Feb 21 13:02:16 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Feb 21 13:02:16 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 32 to 221 (E-value = 7.7e-09) place PG0113 in the Kdo family which is described as Lipopolysaccharide kinase (Kdo/WaaP) family (PF06293)","Wed Feb 21 13:02:16 MST 2001","34539992","","","","","","1","","3","PG0128" "PG0114","150725","151846","1122","ATGAATCGTATAGCTTTTGATGCCAAGAGAATCACATCCAACGCCACCGGGCTGGGCAATTACAGCCGCTTCGTGGTCGAAGCCTTGGCCGCCTTTCACTCCGAACACCGCTACTACCTCTGTTCTCCCGGGAAGGGCAATCCGGCTCTGTACTCCGCCTTGCAGCAACGCGAGGGTATAGAATGGCTGCTTCCCGAAGGGCGACGTATGGGAGGAACGTTTTGGCGCAACTTCGGCGTGGTGCCTCGACTGCAAAAAGAGGGCATCGATCTCTTCCACGGTCTGAGCCACGAATTGCCACTCGGTATATACGGCAAGGGTATCGCCACGGTGGTAACGATCCACGACTTGATCTTCATTCGCTATCCGCACTATTATAAGCCTGTGGACAGGCTGCTGTATCGGCTCAAATACGGCCATGCTGCCCGTTGTGCCGACAGGGTGATAGCGATAAGCGAGCAGACCAAGCGCGATGTGATGGAGTTTTTCCACGTGCCTGCCGATCGGATCGATGTCGTCTATCAGGGTTGTTCGCCGGCCTTCGGACAGGCTACCGAGGAGGATGAGTCGAGAGCGAGGGAGCGATATGCTTTGCCTGAGCGTTACCTGCTCTATGTGGGAAGCATCGAGACGAGGAAGAACCTCCGACTGGCCGTGGAGGCTTTGGCACATTGCCGTGACCGACATATTCGGCTCGTCGCCGTAGGGAAGCGTACGCCATACTGTGCGGAGGTGCAGCAGTGTGCAGAGCGATCAGGTGTGGCAGACCGGCTCGTCATGCTGCACGATGTCCCATTTGCTTTCCTGCCGGGCATCTATCGCGGAGCAGAGGTATTCGTCTATCCTTCGCGCTTCGAGGGATTCGGTATCCCGATTGTCGAAGCCTTGGCTTCGGGCGTGCCGGTCGTTGCGGCCACGGGTTCGTGTCTGGAAGAAGCCGGAGGCCCTTCGTCCCTGTACACCGACCCCGACGATGCGGAAATGATGGCATCCATGCTGGACAGCATCCTCTCCGACAGCTCTCTCCGCGAGAAGATGATAGCCGACGGGCGTACCTATATAGAGCGTTTCTCACCCGAAGCCGTAGCCCGATCCCTGATGCATGTGTACGACAAGGTCTTG","7.30","1.58","41979","MNRIAFDAKRITSNATGLGNYSRFVVEALAAFHSEHRYYLCSPGKGNPALYSALQQREGIEWLLPEGRRMGGTFWRNFGVVPRLQKEGIDLFHGLSHELPLGIYGKGIATVVTIHDLIFIRYPHYYKPVDRLLYRLKYGHAARCADRVIAISEQTKRDVMEFFHVPADRIDVVYQGCSPAFGQATEEDESRARERYALPERYLLYVGSIETRKNLRLAVEALAHCRDRHIRLVAVGKRTPYCAEVQQCAERSGVADRLVMLHDVPFAFLPGIYRGAEVFVYPSRFEGFGIPIVEALASGVPVVAATGSCLEEAGGPSSLYTDPDDAEMMASMLDSILSDSSLREKMIADGRTYIERFSPEAVARSLMHVYDKVL","150725 151846","TIGR ID: PG0129","mannosyltransferase","Cytoplasm","Numerous hits in gapped BLAST to mannosyltransferases, e.g. residues 3-323 are 30% similar to the enzyme from Brucella melitensis (AF047478). Residues 91-370 are 30% similar to mannosyltransferase B from Klebsiella pneumoniae (gb|AAF04384.1).","
InterPro
IPR001296
Domain
Glycosyl transferase, group 1
PF00534\"[187-353]TGlycos_transf_1
noIPR
unintegrated
unintegrated
PTHR12526\"[3-373]TPTHR12526
PTHR12526:SF29\"[3-373]TPTHR12526:SF29
SSF53756\"[1-374]TSSF53756


","BeTs to 13 clades of COG0438COG name: Glycosyltransferases IFunctional Class: MThe phylogenetic pattern of COG0438 is AMTKYQVCEBRhUj--o---XNumber of proteins in this genome belonging to this COG is 9","***** PF00534 (Glycosyl transferases group 1) with a combined E-value of 3.3e-10. PF00534B 279-314","Residues 91-221 are 33% similar to a (MANNOSYLTRANSFERASE TRANSFERASE) protein domain (PD007672) which is seen in O30191_ARCFU.Residues 264-327 are 48% similar to a (TRANSFERASE PROTEIN GLYCOSYLTRANSFERASE SYNTHASE) protein domain (PD000172) which is seen in Q47594_ECOLI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Feb 21 13:27:48 MST 2001","Wed Feb 21 13:27:48 MST 2001","Mon Apr 2 11:20:33 MDT 2001","Wed Feb 21 13:08:39 MST 2001","Wed Feb 21 13:08:39 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG0114 show similarity to PG1469, PG1180 and PG1029. Residues 90-373 are 23% similar to PG1469, a probable hexosyltransferase. ","Mon Apr 2 11:20:33 MDT 2001","Wed Feb 21 13:08:39 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 187 to 353 (E-value = 4e-23) place PG0114 in the Glycos_transf_1 family which is described as Glycosyl transferases group 1 (PF00534)","Mon Apr 2 11:20:33 MDT 2001","34539993","","","","","","1","","3","PG0129" "PG0115","152758","152015","744","ATGAAAAGAATAGTATTGATTCGCCACGGCGAAAGCTTGTGGAACAAGGAAAATCGCTTTACGGGATGGACAGATGTGGATTTGTCCGAAAAAGGTATTGAAGAAGCCAAGAAAGCCGGCGAGCTCATGAAGAAAGAAGGCTTTCAGTTTACCAAAGCCTATACTTCCTATCTCAAACGTGCCGTCAAGACCCTGAACGGTGTCCTCGATGTAATGGACTTGGATTGGATACCGGTGGAGAAGACCTGGCGTCTGAACGAGAAGCACTACGGCATGCTGCAAGGCCTCAACAAGGCCGAGACTGCCGAGAAGTACGGAGACGAACAGGTACTCATCTGGCGTCGCAGCTACGACGTCCCCCCCACGCCTATGGAGAAAGAGGATCCGCGCTCTCCGTTCATGGATCCGCGCTACAAAGGTGTGTGCGAGAAAGACCTGCCACTGACAGAAGCTCTCTGCGACACGGTAAATCGTATCCTCCCCTATTGGAACGAGACCATATTCCCCACGCTCAAGGAGCATGACGAGGTATTGGTAGCAGCTCACGGCAACAGTCTGCGTGGTATCATCAAGGTGCTGAAAAACATTTCGGACGAAGACATCATCAGCCTGAACCTCCCGACAGCCGTGCCTTACGTTTTTGAATTTGACGACAATCTCCGTCTGGTGAAGGACTATTTCCTCGGCGATCCAGAAGAGATCAAAAAGCTGATGGAGGCAGTAGCCAATCAGGGCAAGAAGAAA","5.90","-3.11","28723","MKRIVLIRHGESLWNKENRFTGWTDVDLSEKGIEEAKKAGELMKKEGFQFTKAYTSYLKRAVKTLNGVLDVMDLDWIPVEKTWRLNEKHYGMLQGLNKAETAEKYGDEQVLIWRRSYDVPPTPMEKEDPRSPFMDPRYKGVCEKDLPLTEALCDTVNRILPYWNETIFPTLKEHDEVLVAAHGNSLRGIIKVLKNISDEDIISLNLPTAVPYVFEFDDNLRLVKDYFLGDPEEIKKLMEAVANQGKKK","152758 152015","TIGR ID: PG0130","phosphoglycerate mutase","Cytoplasm","Several hits in gapped BLAST to phosphoglycerate mutase sequences, e.g. residues 3-248 are 58% similar to PGM1_ECOLI ( gb|AAG55084.1).","
InterPro
IPR001345
Active_site
Phosphoglycerate/bisphosphoglycerate mutase
PS00175\"[6-15]TPG_MUTASE
InterPro
IPR005952
Family
Phosphoglycerate mutase 1
PTHR11931\"[1-248]TPhosphogly_mut1
TIGR01258\"[2-246]Tpgm_1
InterPro
IPR013078
Domain
Phosphoglycerate mutase
PF00300\"[3-189]TPGAM
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.1240\"[3-248]TG3DSA:3.40.50.1240
PIRSF001490\"[2-246]TDPGAM
SSF53254\"[1-246]TSSF53254


","BeTs to 6 clades of COG0588COG name: Phosphoglycerate mutase 1Functional Class: GThe phylogenetic pattern of COG0588 is ----Y---e-rh----olin-Number of proteins in this genome belonging to this COG is 1","***** IPB001345 (Phosphoglycerate mutase family) with a combined E-value of 2e-57. IPB001345A 4-36 IPB001345B 53-65 IPB001345C 76-108 IPB001345D 154-199","Residues 93-230 are 57% similar to a (MUTASE PHOSPHOGLYCERATE PGAM) protein domain (PD003480) which is seen in PMG1_ECOLI.Residues 77-125 are 42% similar to a (PHOSPHOGLYCERATE MUTASE PHOSPHOGLYCEROMUTASE PGAM MPGM) protein domain (PD033397) which is seen in PMG2_YEAST.Residues 3-91 are 59% similar to a (PROTEIN MUTASE PHOSPHOGLYCERATE) protein domain (PD000730) which is seen in PMG1_ECOLI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Mar 22 11:50:46 MST 2000","Wed Feb 21 13:46:36 MST 2001","Tue Jan 2 16:31:35 MST 2001","Wed Feb 21 13:42:21 MST 2001","Wed Feb 21 13:42:21 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Feb 21 13:42:21 MST 2001","-74% similar to PDB:1E58 E.COLI COFACTOR-DEPENDENT PHOSPHOGLYCERATE MUTASE (E_value = 1.3E_83);-74% similar to PDB:1E59 E.COLI COFACTOR-DEPENDENT PHOSPHOGLYCERATE MUTASE COMPLEXED WITH VANADATE (E_value = 1.3E_83);-72% similar to PDB:1XQ9 Structure of Phosphoglycerate Mutase from Plasmodium falciparum at 2.6 Resolution (E_value = 7.0E_77);-69% similar to PDB:1YFK Crystal structure of human B type phosphoglycerate mutase (E_value = 4.7E_73);-69% similar to PDB:1YJX Crystal structure of human B type phosphoglycerate mutase (E_value = 4.7E_73);","","","Residues 2 to 226 (E-value = 2.4e-114) place PG0115 in the PGAM family which is described as Phosphoglycerate mutase family (PF00300)","Fri Mar 9 15:19:54 MST 2001","34539994","","","","","","1","","3","PG0130" "PG0116","153019","153111","93","TTGGGCGTGGAGAACCGACGATTTTACGAACGCGATGTGAGCAAAGTGTCGATGATGACCTCTGAGGCAGTAGCCCCTCGGGGAGGGAGCAAA","10.50","1.98","3440","LGVENRRFYERDVSKVSMMTSEAVAPRGGSK","152812 153111 [Shorter 151 67 97]","TIGR ID: PG0132","hypothetical protein","Periplasm, Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Tue Jun 12 17:37:03 MDT 2001","","Tue Jun 12 17:37:03 MDT 2001","Tue Jun 12 17:37:03 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Tue Jun 12 17:37:03 MDT 2001","Tue Jun 12 17:37:03 MDT 2001","","","Wed Feb 21 13:47:55 MST 2001","","Wed Feb 21 13:47:55 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Feb 21 13:47:55 MST 2001","-63% similar to PDB:1VZQ COMPLEX OF THROMBIN WITH DESIGNED INHIBITOR 7165 (E_value = );-63% similar to PDB:1A2C STRUCTURE OF THROMBIN INHIBITED BY AERUGINOSIN298-A FROM A BLUE-GREEN ALGA (E_value = );-63% similar to PDB:1A3B COMPLEX OF HUMAN ALPHA-THROMBIN WITH THE BIFUNCTIONAL BORONATE INHIBITOR BOROLOG1 (E_value = );-63% similar to PDB:1A3E COMPLEX OF HUMAN ALPHA-THROMBIN WITH THE BIFUNCTIONAL BORONATE INHIBITOR BOROLOG2 (E_value = );-63% similar to PDB:1A46 THROMBIN COMPLEXED WITH HIRUGEN AND A BETA-STRAND MIMETIC INHIBITOR (E_value = );","","","No significant hits to the Pfam 11.0 database","Tue Jun 12 17:37:03 MDT 2001","34539995","","","","","","1","","3","PG0132" "PG0117","154352","153045","1308","ATGAGCCTACTACGTCGATTCTCTTCTCGCCTTTATGCCCTCGCTCCCAAACGGATGCAGTATATCATCACAGAGGGAAAACGACGCCTGCGCCGCCTAACGGTAGAGCCTCGGCTCATTTGCGAAGCACAGCAGCGCAACGATGAGCTAAAAAAGAAACTATGCGGCAAGGAAACCATCAATGTCGTATTCCTTGCCGTGTACGATTCCATGTGGAAATACGATGCCCTGTTTGCTGCCATGCTCCGGCATCCGCGTGTTCGGCCTGTACTCATCGTTTGTCCTGCGGACAATCTGCCGGCCGGCGAACGGGGCGAACTCCTGCAAAAGACGCTTGCTCACTTTCAGGCCAAAGGCTTCGATCCGCAACCGGCTTGTCGGGACAATGGAGAGGTGAGAGACATTCGGGCTGAATTTGCACCGGATTACATTTTCTATACCACACCTTACGACATCCAGTTGCCTCCGCCCCTTCGCCAGAGGACCTTTCCCGATATACTCACCTGCTACAGCCTCTATGGCTATCCCCTCGAAGAATATCCTGACTGGTACGACCTCCTGTTTCACAATCTTCTGGGGTACTACTTTTTGGTTTCGGAAGAAGACCTTCGCATCTACTCGCGACTCTCTCGCGTGAGGGGATGCAACGGAGTGGTCAGCGGAGCACCTTTGTTCGATGCTTTCTCCTCCGAAATGAGGAGTCGAACGGAAAAAAATAATGAGGAGCTACCCCTCGTAATCATCGCTCCGCACCATTCGATAGAGCCTTGGGGATATAGCCTGTCCAATTTTCTCGATTATGCGGATACCTTCCTCCGACTGGCACGGAAGTACGAAGGCCGATTGCGCTTTGCTTTCAAACCACATCCGATACTCAAGACCAAACTCTATGCTCCGGAATCGTGGGGACGCGAACGAACAGATCAGTACTACCGGGAATGGGCAGATATGCCTCATGCCGAATTGGCCGAAGGAGCTTATGTCGATCTCTTTTGTCGCTCTTCGGCTCTCGTACATGATTGCAGTGCTTTCACCGTGGAATATCAGATCGTGGGGCGTCCGGCCCTCTTTATGCGGAAGAACGGACGCCTTCCTCACGGGCTCAACCGAGCTGCCCAAGAGGCCTTCGCGTTGCATGATATGGCAGATTCTGCGGAAGACATCGATTCGTTTCTCCAAAAGATAGCAGAGCGCAGACCCGATCCAGTAGCCGATAGGCGTCGGGTCTTCATCCGGGACTATTTGCTCCCTCCCCGAGGGGCTACTGCCTCAGAGGTCATCATCGACACTTTGCTCACATCGCGTTCG","8.20","6.06","50599","MSLLRRFSSRLYALAPKRMQYIITEGKRRLRRLTVEPRLICEAQQRNDELKKKLCGKETINVVFLAVYDSMWKYDALFAAMLRHPRVRPVLIVCPADNLPAGERGELLQKTLAHFQAKGFDPQPACRDNGEVRDIRAEFAPDYIFYTTPYDIQLPPPLRQRTFPDILTCYSLYGYPLEEYPDWYDLLFHNLLGYYFLVSEEDLRIYSRLSRVRGCNGVVSGAPLFDAFSSEMRSRTEKNNEELPLVIIAPHHSIEPWGYSLSNFLDYADTFLRLARKYEGRLRFAFKPHPILKTKLYAPESWGRERTDQYYREWADMPHAELAEGAYVDLFCRSSALVHDCSAFTVEYQIVGRPALFMRKNGRLPHGLNRAAQEAFALHDMADSAEDIDSFLQKIAERRPDPVADRRRVFIRDYLLPPRGATASEVIIDTLLTSRS","154352 153045 [Bad Olap 150 67 2]","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No hit found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Feb 16 10:20:12 MST 2001","","Fri Feb 16 10:20:12 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Feb 16 10:20:12 MST 2001","-48% similar to PDB:1Z63 Sulfolobus solfataricus SWI2/SNF2 ATPase core in complex with dsDNA (E_value = );-48% similar to PDB:1Z6A Sulfolobus solfataricus SWI2/SNF2 ATPase core domain (E_value = );","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","3","" "PG0118","155854","154352","1503","ATGGGGATTGTCGAACGCCAGAGTATCAAAGGAACCCTCGTCAGCTATGCAGGTGCTTTCATCGGCTTCCTGACCACTTTCCTTATTATCACCGAATTTCTTACCCCCAAGGAAGTCGGTCTGACCCGTAATATCGTCGAAGCCGCTACGCTGATCAGCAGTTTTGCGCTCCTCGGGCTTAATTCCTCTGCTTTCCGATTCTATCCCTACTTCCATAGTGAGAGCGGAGAAGCCTCCCCCGATGGAGTTCGAGACAATGGTTACTTCTACTACATGATGGCGATAGCCCTTATCGGAGGAGTACTTATGACCCTTTTGATGCTGCTGGCCAAAGGTCCCTTCGTGACCATGTTCAGTCGCAATAGCCCCGAACTGGTGGACTTTTACTATAGTATCGTCCCCTTGTTCGTCTTCATGCTCTTTTGGTCTGTCTTCGAACTCTACGCCACACAACTGATGCGAATAGCCGTGCCCAAGCTGATCCGCGAGGTAGTGCTCAGGCTGATGCTGATCGTCGTTTATCTGCTCTATGCCTTTCGATGGGTCAGTCTGGAAGTTTTCATCGCCATATTTATTGCAGCCTATGCCGCATGTATGCTCTTGCTGTTGGCTTATATCCGGCGAATCGGCAAGGTCAATCTCCGTCACAATCGGGGCTTTCTGACACCGGAGCTGAAGCGCAATTTTCTCCGCTACACCCTCTTCTATGTCGTAGCCAGTATAGGCAGCAAGCTCAGCAGCCGCTTGGATCTCTTCATGGTCAGCTCTCTGGACAAGGGCGGATTGGATTCGGGTGGTATTTTCTCTATTGCTTTCTATATGGTAGCCGTGGTGGAAATACCCTCCAGATCCCTGCTCAGCGTCTCTTCTCCCTTGATGGCCGACGCCATGAAACGGAACGATCTGGTCAAAGCCGACGAACTCTTCAAGCGCGTCTCGCTGCATCAGCTTCTTTCCGGTGGCCTTATCTTCTTGCTTATTTGGTTCAATATCGACAGCATCTTCTCCATCCTCCCGAACGGTCACCTCTATGCCGCCGGCAAATATGTCGTTTTCTATTTGGGAATCGCTAAGATGATCGAAATCACGCTGAACTACGGCAATCCGATCGTGAGCTGTTCCAAGTATTATCACTGGAATCTTTACTATACTTTCCTCGTCACCATTCTGGCCGTGCTCACCAATCTGTGGCTGATCCCTGTTTTGGGAATCAACGGAGCGGCCATTGCCACGCTCCTGACCACGCTGCTGAGCTATGGCGTACAGCAGTTTATGATCAGCCGGAAGCTGCATGCTTCGCCCTTTTCTCCGGCCCTCTTCCGTCTGTTGGCTCTCTTCGCCCTCCTTTTTGGTGCCAATGCCTTGATACCTCATGTCGATTCTCCCTGGCTCGATATACCCCTTCGTTCCATCCCCATCGGAGTAGGGGCACTTGTGGCAGTCTATGCCATGCGCCTGTCTCCCGAGTTCAATAGAGCCATAGACAAATATCTCCGTCGCCGA","10.50","16.59","56313","MGIVERQSIKGTLVSYAGAFIGFLTTFLIITEFLTPKEVGLTRNIVEAATLISSFALLGLNSSAFRFYPYFHSESGEASPDGVRDNGYFYYMMAIALIGGVLMTLLMLLAKGPFVTMFSRNSPELVDFYYSIVPLFVFMLFWSVFELYATQLMRIAVPKLIREVVLRLMLIVVYLLYAFRWVSLEVFIAIFIAAYAACMLLLLAYIRRIGKVNLRHNRGFLTPELKRNFLRYTLFYVVASIGSKLSSRLDLFMVSSLDKGGLDSGGIFSIAFYMVAVVEIPSRSLLSVSSPLMADAMKRNDLVKADELFKRVSLHQLLSGGLIFLLIWFNIDSIFSILPNGHLYAAGKYVVFYLGIAKMIEITLNYGNPIVSCSKYYHWNLYYTFLVTILAVLTNLWLIPVLGINGAAIATLLTTLLSYGVQQFMISRKLHASPFSPALFRLLALFALLFGANALIPHVDSPWLDIPLRSIPIGVGALVAVYAMRLSPEFNRAIDKYLRRR","155854 154352 [Shorter 154 1374 99]","TIGR ID: PG0133","conserved hypothetical protein; possible transporter","Inner membrane, Cytoplasm","Its nearest neighbor in the NR database is gi:23137525 from Cytophaga hutchinsonii.","
InterPro
IPR002797
Family
Polysaccharide biosynthesis protein
PF01943\"[4-297]TPolysacc_synt


","BeTs to 3 clades of COG2244COG name: Membrane protein involved in the export of O-antigen and teichoic acid, RfbX familyFunctional Class: RThe phylogenetic pattern of COG2244 is aMTK-Qv-EB-----------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Mar 1 10:11:21 2005","Tue Mar 1 10:11:21 2005","Fri Feb 16 10:22:07 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Feb 16 10:22:07 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Fri Mar 9 14:28:13 MST 2001","34539996","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Tue Mar 1 10:11:21 2005","","1","","3","PG0133" "PG0119","157225","155876","1350","ATGGACTTCACGAAAGAATATCTTCACAATCTTCGCGAGATCATCGACCAAAAGCGCGATGCAGATGCTCTCGACCTGATGAGCAAGCTCCACCCCGAGGATATTGCGGCTCTCTATGACGAGCTGGATCTGGACGAGGCTGTCTACCTCTACCTCCTGCTCGATGGAGAAAAGGCCGGTCTCGTACTCTTGGAGCTGGATGAAGATGAGCGAAACAAGGTCCTCGAAAGGATTCCTTCCGAGACCATCGCCGGAAAATTTGTCGGCAACATGGAGACCGACGATGCGGCCGAGCTGATTCGTGAGCTGGACGAAGACCAGCAAGACGAGATTCTCAGTCAGGTGACCGATATAGAGCAGGCCGGAGATATTATCGATCTGCTCAAGTACGAAGACGATACAGCCGGTAGCCTCATGGGTACCGAGATGATAATCGTCAATGAGAACTGGAGTATGCCCAAGTGTATCGAAGAGATGCGTATGCAGGCAGAGGATGTGGACGAGATATACTACGTCTATGTCATCGACGATGAAGAACGGCTCAAAGGAGTGCTGCCGCTGAAGAAACTGATCACCAGCCCTTCCGCTTCCAAGATCAAGTATGTGATGAAGACCGAGCCTATTTCCGTCAAAGACAATGACCCGATCGAAGAAGTCGCGGAGAAGATAGAGAAGTACGACCTCGTGGCTCTGCCGGTAGTGGACAGTATCGGTCGTTTGGTAGGCCGGATCACTATCGACGATGTGATCGACGAAATTCGCGAACAGCACGAGCGCGACTATCAGCTTGCATCGGGTATTTCGCAAGATATAGAAGCATCGGATAAGGTCTATATGCAGACCGCAGCACGCCTGCCGTGGCTTCTCATCGGCATGGCGGGAGGATTGGCCAACTCCATCCTCTTGGGAGGATTCGATTCCCTCTTTGCCGCCAATCCCAAGATGGCCCTCTTCATTCCGCTCATTGGCGGCACAGGCGGCAATGTGGGCATCCAGTCTTCGGCCATCGTGGTACAGGGGCTGGCAAACAATAGTCTGAAGCAGGCCAAACTCTGGAGTCTCATAGCCAAGGAAGTCGTCGTAGCCCTGATCAATGCCTCTATCATCAGCCTTGTCGTCTTCCTGTTCAACTACTTTTTCCTCGGTGACGTCCTCGTCATGTCTGCCGTCTCCATCAGCCTCTTTTCCGTCGTATTGTTCGCCAGCATATTCGGCACCATGGTACCGATGCTGCTGGATCGATTGAAGATAGACCCGGCCATAGCCACCGGCCCCTTTATCACCATTACGAACGACCTCATCGGGATGATGATCTATATGCTTGTGGCCACGCTGCTTGCTCAGGCCTTG","4.10","-40.26","49870","MDFTKEYLHNLREIIDQKRDADALDLMSKLHPEDIAALYDELDLDEAVYLYLLLDGEKAGLVLLELDEDERNKVLERIPSETIAGKFVGNMETDDAAELIRELDEDQQDEILSQVTDIEQAGDIIDLLKYEDDTAGSLMGTEMIIVNENWSMPKCIEEMRMQAEDVDEIYYVYVIDDEERLKGVLPLKKLITSPSASKIKYVMKTEPISVKDNDPIEEVAEKIEKYDLVALPVVDSIGRLVGRITIDDVIDEIREQHERDYQLASGISQDIEASDKVYMQTAARLPWLLIGMAGGLANSILLGGFDSLFAANPKMALFIPLIGGTGGNVGIQSSAIVVQGLANNSLKQAKLWSLIAKEVVVALINASIISLVVFLFNYFFLGDVLVMSAVSISLFSVVLFASIFGTMVPMLLDRLKIDPAIATGPFITITNDLIGMMIYMLVATLLAQAL","157225 155876 [Shadowed by 154]","TIGR ID: PG0134","Mg2+ transport protein MgtE (CBS domain)","Cytoplasm, Inner membrane","Several hits in gapppeed BLAST to Mg+2 transporter sequences, e.g. residues 11-444 are 31% similar to the transporter in Bacillus halodurans (AP001508). This sequence is orthologous to CT194 and to BT4042.","
InterPro
IPR000644
Domain
Cystathionine-beta-synthase
PF00571\"[137-254]TCBS
SM00116\"[142-195]T\"[206-254]TCBS
InterPro
IPR001807
Family
Chloride channel, voltage gated
PTHR11689\"[194-258]TCl-channel_volt
InterPro
IPR006667
Domain
MgtE integral membrane region
PF01769\"[318-443]TMgtE
InterPro
IPR006668
Domain
MgtE intracellular region
PF03448\"[5-135]TMgtE_N
InterPro
IPR006669
Family
Divalent cation transporter
TIGR00400\"[2-450]TmgtE
InterPro
IPR011002
Family
Flagellar motor switch protein FliG-like
SSF48029\"[31-140]TFliG_like
noIPR
unintegrated
unintegrated
PTHR11689:SF20\"[194-258]TPTHR11689:SF20
SSF54631\"[129-191]T\"[193-270]TSSF54631


","BeTs to 9 clades of COG2239COG name: Mg/Co/Ni transporter MgtE (contains CBS domain)Functional Class: PThe phylogenetic pattern of COG2239 is --t---vc-br-----olinxNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 270-446 are 35% similar to a (MGTE PROTEIN TRANSPORTER MG2+) protein domain (PD006806) which is seen in Q45121_BACFI.Residues 11-136 are 31% similar to a (YKOK PROTEIN MG2+ TRANSPORTER) protein domain (PD155298) which is seen in Q9Z9P9_BBBBB.Residues 139-226 are 36% similar to a (PROTEIN CBS DOMAIN DEHYDROGENASE REPEAT) protein domain (PD000251) which is seen in Q45121_BACFI.Residues 146-266 are 28% similar to a (PROTEIN MG2+ TRANSPORTER) protein domain (PD096712) which is seen in O06312_MYCTU.Residues 6-260 are 25% similar to a (MAGNESIUM TRANSPORTER MGTE) protein domain (PD213388) which is seen in Q9ZCX0_RICPR.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Apr 17 12:52:16 MDT 2001","Mon Jan 5 09:51:46 2004","Tue Apr 17 12:52:16 MDT 2001","","Wed Feb 21 13:55:45 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Feb 21 13:55:45 MST 2001","-55% similar to PDB:2OUX Crystal structure of the soluble part of a magnesium transporter (E_value = 4.2E_34);","","","Residues 5 to 135 (E-value = 3.5e-25) place PG0119 in the MgtE_N family which is described as MgtE intracellular domain (PF03448)Residues 201 to 254 (E-value = 1.3e-12) place PG0119 in the CBS family which is described as CBS domain (PF00571)Residues 318 to 443 (E-value = 2.4e-30) place PG0119 in the MgtE family which is described as Divalent cation transporter (PF01769)","Mon Jan 5 09:51:46 2004","34539997","","","","","","1","","3","PG0134" "PG0120","154481","157276","2796","ATGAGGTATCAAGGCATTGGCACCAAAAAGGAGGGCGAAGAGAGCCAACAGACGGAAGAGGGCCGGAGAAAAGGGCGAAGCATGCAGCTTCCGGCTGATCATAAACTGCTGTACGCCATAGCTCAGCAGCGTGGTCAGGAGCGTGGCAATGGCCGCTCCGTTGATTCCCAAAACAGGGATCAGCCACAGATTGGTGAGCACGGCCAGAATGGTGACGAGGAAAGTATAGTAAAGATTCCAGTGATAATACTTGGAACAGCTCACGATCGGATTGCCGTAGTTCAGCGTGATTTCGATCATCTTAGCGATTCCCAAATAGAAAACGACATATTTGCCGGCGGCATAGAGGTGACCGTTCGGGAGGATGGAGAAGATGCTGTCGATATTGAACCAAATAAGCAAGAAGATAAGGCCACCGGAAAGAAGCTGATGCAGCGAGACGCGCTTGAAGAGTTCGTCGGCTTTGACCAGATCGTTCCGTTTCATGGCGTCGGCCATCAAGGGAGAAGAGACGCTGAGCAGGGATCTGGAGGGTATTTCCACCACGGCTACCATATAGAAAGCAATAGAGAAAATACCACCCGAATCCAATCCGCCCTTGTCCAGAGAGCTGACCATGAAGAGATCCAAGCGGCTGCTGAGCTTGCTGCCTATACTGGCTACGACATAGAAGAGGGTGTAGCGGAGAAAATTGCGCTTCAGCTCCGGTGTCAGAAAGCCCCGATTGTGACGGAGATTGACCTTGCCGATTCGCCGGATATAAGCCAACAGCAAGAGCATACATGCGGCATAGGCTGCAATAAATATGGCGATGAAAACTTCCAGACTGACCCATCGAAAGGCATAGAGCAGATAAACGACGATCAGCATCAGCCTGAGCACTACCTCGCGGATCAGCTTGGGCACGGCTATTCGCATCAGTTGTGTGGCGTAGAGTTCGAAGACAGACCAAAAGAGCATGAAGACGAACAAGGGGACGATACTATAGTAAAAGTCCACCAGTTCGGGGCTATTGCGACTGAACATGGTCACGAAGGGACCTTTGGCCAGCAGCATCAAAAGGGTCATAAGTACTCCTCCGATAAGGGCTATCGCCATCATGTAGTAGAAGTAACCATTGTCTCGAACTCCATCGGGGGAGGCTTCTCCGCTCTCACTATGGAAGTAGGGATAGAATCGGAAAGCAGAGGAATTAAGCCCGAGGAGCGCAAAACTGCTGATCAGCGTAGCGGCTTCGACGATATTACGGGTCAGACCGACTTCCTTGGGGGTAAGAAATTCGGTGATAATAAGGAAAGTGGTCAGGAAGCCGATGAAAGCACCTGCATAGCTGACGAGGGTTCCTTTGATACTCTGGCGTTCGACAATCCCCATAGCTCGTCCCGTCCGAAATTACAAGGCCTGAGCAAGCAGCGTGGCCACAAGCATATAGATCATCATCCCGATGAGGTCGTTCGTAATGGTGATAAAGGGGCCGGTGGCTATGGCCGGGTCTATCTTCAATCGATCCAGCAGCATCGGTACCATGGTGCCGAATATGCTGGCGAACAATACGACGGAAAAGAGGCTGATGGAGACGGCAGACATGACGAGGACGTCACCGAGGAAAAAGTAGTTGAACAGGAAGACGACAAGGCTGATGATAGAGGCATTGATCAGGGCTACGACGACTTCCTTGGCTATGAGACTCCAGAGTTTGGCCTGCTTCAGACTATTGTTTGCCAGCCCCTGTACCACGATGGCCGAAGACTGGATGCCCACATTGCCGCCTGTGCCGCCAATGAGCGGAATGAAGAGGGCCATCTTGGGATTGGCGGCAAAGAGGGAATCGAATCCTCCCAAGAGGATGGAGTTGGCCAATCCTCCCGCCATGCCGATGAGAAGCCACGGCAGGCGTGCTGCGGTCTGCATATAGACCTTATCCGATGCTTCTATATCTTGCGAAATACCCGATGCAAGCTGATAGTCGCGCTCGTGCTGTTCGCGAATTTCGTCGATCACATCGTCGATAGTGATCCGGCCTACCAAACGACCGATACTGTCCACTACCGGCAGAGCCACGAGGTCGTACTTCTCTATCTTCTCCGCGACTTCTTCGATCGGGTCATTGTCTTTGACGGAAATAGGCTCGGTCTTCATCACATACTTGATCTTGGAAGCGGAAGGGCTGGTGATCAGTTTCTTCAGCGGCAGCACTCCTTTGAGCCGTTCTTCATCGTCGATGACATAGACGTAGTATATCTCGTCCACATCCTCTGCCTGCATACGCATCTCTTCGATACACTTGGGCATACTCCAGTTCTCATTGACGATTATCATCTCGGTACCCATGAGGCTACCGGCTGTATCGTCTTCGTACTTGAGCAGATCGATAATATCTCCGGCCTGCTCTATATCGGTCACCTGACTGAGAATCTCGTCTTGCTGGTCTTCGTCCAGCTCACGAATCAGCTCGGCCGCATCGTCGGTCTCCATGTTGCCGACAAATTTTCCGGCGATGGTCTCGGAAGGAATCCTTTCGAGGACCTTGTTTCGCTCATCTTCATCCAGCTCCAAGAGTACGAGACCGGCCTTTTCTCCATCGAGCAGGAGGTAGAGGTAGACAGCCTCGTCCAGATCCAGCTCGTCATAGAGAGCCGCAATATCCTCGGGGTGGAGCTTGCTCATCAGGTCGAGAGCATCTGCATCGCGCTTTTGGTCGATGATCTCGCGAAGATTGTGAAGATATTCTTTCGTGAAGTCCATAAGAATTCGTTAATCAGGGGGGATGAAAATGCTATTGCTGCAACAGGAGTG","4.80","-67.00","103957","MRYQGIGTKKEGEESQQTEEGRRKGRSMQLPADHKLLYAIAQQRGQERGNGRSVDSQNRDQPQIGEHGQNGDEESIVKIPVIILGTAHDRIAVVQRDFDHLSDSQIENDIFAGGIEVTVREDGEDAVDIEPNKQEDKATGKKLMQRDALEEFVGFDQIVPFHGVGHQGRRDAEQGSGGYFHHGYHIESNRENTTRIQSALVQRADHEEIQAAAELAAYTGYDIEEGVAEKIALQLRCQKAPIVTEIDLADSPDISQQQEHTCGIGCNKYGDENFQTDPSKGIEQINDDQHQPEHYLADQLGHGYSHQLCGVEFEDRPKEHEDEQGDDTIVKVHQFGAIATEHGHEGTFGQQHQKGHKYSSDKGYRHHVVEVTIVSNSIGGGFSALTMEVGIESESRGIKPEERKTADQRSGFDDITGQTDFLGGKKFGDNKESGQEADESTCIADEGSFDTLAFDNPHSSSRPKLQGLSKQRGHKHIDHHPDEVVRNGDKGAGGYGRVYLQSIQQHRYHGAEYAGEQYDGKEADGDGRHDEDVTEEKVVEQEDDKADDRGIDQGYDDFLGYETPEFGLLQTIVCQPLYHDGRRLDAHIAACAANERNEEGHLGIGGKEGIESSQEDGVGQSSRHADEKPRQACCGLHIDLIRCFYILRNTRCKLIVALVLFANFVDHIVDSDPAYQTTDTVHYRQSHEVVLLYLLRDFFDRVIVFDGNRLGLHHILDLGSGRAGDQFLQRQHSFEPFFIVDDIDVVYLVHILCLHTHLFDTLGHTPVLIDDYHLGTHEATGCIVFVLEQIDNISGLLYIGHLTENLVLLVFVQLTNQLGRIVGLHVADKFSGDGLGRNPFEDLVSLIFIQLQEYETGLFSIEQEVEVDSLVQIQLVIESRNILGVELAHQVESICIALLVDDLAKIVKIFFREVHKNSLIRGDENAIAATGV","154481 157276 [Bad Olap 152 1374 0]","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Feb 21 13:56:54 MST 2001","","Wed Feb 21 13:56:54 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Feb 21 13:56:54 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Feb 21 13:56:54 MST 2001","","","","","","","1","","3","" "PG0121","158033","157260","774","ATGATGCGAGTAAAAGCCAAGAAGGCACTGGGGCAACACTTCCTTCGCGATCTGAGTATTGCAGAGCGAATAGCCGACACCCTTTCCGAGCATAAAGCATTGCCTGTACTGGAGATCGGGCCGGGTATGGGAGTGCTTACGCAGTTCTTACTTCGCAAGGGGCATGATGTTCGCGTCATAGAGATCGACGGTGAGTCCGTCAGCTATTTGCGAGAAGAGTTTCCCGAACTTTCCGATCGGATCATAGAGGGCGATTTTCTGCACTATCCTTTGTCGGAGCTGTTCCCCGGAGGACGACAATACTGCCTGATAGGCAATTATCCCTACAATATCTCCAGCCAGATTTTCTTCCGCCTGTTGGACGTTCGCGAGCAGATTCCCTGTTGTTCGGGGATGCTGCAGCGCGAAGTGGCTATGCGACTTGCATCGCCTCCCGGGAAAAAAGATTACGGCATATTGAGCGTGTTATTGCAGCTTTGGTACAATATCGAATACCTCTTCACCGTAGACGCTTCCGTTTTCGACCCCCCGCCCAAAGTGCAGAGCGGTGTAATACGTCTGACACGCAATGACCGCAAGGAACTTCCATGTAGCGAGAAAGCCTTGAAAACAGTGGTGAAAACAGCTTTCGGACAGCGTCGGAAAACGCTTAGGAACTCTCTTCGCGGTATCTTGCCGGCCGGTTTTGATCGTTTCGACGAACCCGTTTTCTCGAAGCGACCGGAGCAGTTGTCTCCGGATGATTTCATCGCACTTACACTCCTGTTGCAGCAA","8.50","3.78","29397","MMRVKAKKALGQHFLRDLSIAERIADTLSEHKALPVLEIGPGMGVLTQFLLRKGHDVRVIEIDGESVSYLREEFPELSDRIIEGDFLHYPLSELFPGGRQYCLIGNYPYNISSQIFFRLLDVREQIPCCSGMLQREVAMRLASPPGKKDYGILSVLLQLWYNIEYLFTVDASVFDPPPKVQSGVIRLTRNDRKELPCSEKALKTVVKTAFGQRRKTLRNSLRGILPAGFDRFDEPVFSKRPEQLSPDDFIALTLLLQQ","158033 157260","TIGR ID: PG0135","dimethyladenosine transferase","Cytoplasm","Significant hits to dimethyladenosine transferase proteins; e.g. residues 4-256 are 34% similar to dimethyladenosine transferase(P43038) of Mycoplasma capricolum, residues 1-253 are 34% similar to dimethyladenosine transferase (AE002424) of Neisseria meningitidis, residues 5-257 are 34% similar to dimethyladenosine transferase (AE001308) of Chlamydia trachomatis.Residues 9-178 are 27% similar to ErmAM [Shuttle vector pHS17],(gb|AAF34637.1|).","
InterPro
IPR001737
Family
Ribosomal RNA adenine methylase transferase
PTHR11727\"[1-257]TRRNA_meth_trans
PF00398\"[3-258]TRrnaAD
SM00650\"[20-191]TrADc
PS01131\"[36-63]TRRNA_A_DIMETH
InterPro
IPR011530
Family
RRNA 16S rRNA dimethylase
TIGR00755\"[4-256]TksgA
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.150\"[12-193]TG3DSA:3.40.50.150
PIRSF000392\"[2-258]TKsgA
SSF53335\"[12-258]TSSF53335


","BeTs to 17 clades of COG0030COG name: Dimethyladenosine transferase (rRNA methylation)Functional Class: JThe phylogenetic pattern of COG0030 is amtkyqvcebRhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB001737 (Ribosomal RNA adenine dimethylase) with a combined E-value of 1.1e-24. IPB001737A 21-66 IPB001737B 103-116 IPB001737C 169-190","Residues 132-252 are 40% similar to a (TRANSFERASE METHYLTRANSFERASE RRNA RESISTANCE PROTEIN) protein domain (PD000922) which is seen in Q9Z6K0_BBBBB.Residues 11-94 are 39% similar to a (TRANSFERASE METHYLTRANSFERASE PROTEIN RRNA RESISTANCE) protein domain (PD000786) which is seen in KSGA_MYCCA.Residues 13-187 are 29% similar to a (PROTEIN ORF PUTATIVE KINASE) protein domain (PD000146) which is seen in O51536_BORBU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Mar 22 10:21:08 MST 2000","Tue Dec 12 13:43:05 MST 2000","Wed May 23 13:39:13 MDT 2001","Wed May 23 13:39:13 MDT 2001","Wed May 23 13:39:13 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Fri Apr 7 10:32:09 MDT 2000","Wed May 23 13:39:13 MDT 2001","-53% similar to PDB:1QYR 2.1 Angstrom Crystal structure of KsgA: A Universally Conserved Adenosine Dimethyltransferase (E_value = 1.8E_27);-49% similar to PDB:1ZQ9 Crystal structure of human Dimethyladenosine transferase (E_value = 1.3E_20);-50% similar to PDB:2H1R Crystal structure of a dimethyladenosine transferase from Plasmodium falciparum (E_value = 2.9E_17);-48% similar to PDB:1YUB SOLUTION STRUCTURE OF AN RRNA METHYLTRANSFERASE (ERMAM) THAT CONFERS MACROLIDE-LINCOSAMIDE-STREPTOGRAMIN ANTIBIOTIC RESISTANCE, NMR, MINIMIZED AVERAGE STRUCTURE (E_value = 5.9E_10);","","","Residues 3 to 258 (E-value = 1.2e-45) place PG0121 in the RrnaAD family which is described as Ribosomal RNA adenine dimethylase (PF00398)","Wed May 23 13:39:13 MDT 2001","34539998","","","van Buul CP, van Knippenberg PH. Nucleotide sequence of the ksgA gene of Escherichia coli: comparison of methyltransferases effecting dimethylation of adenosine in ribosomal RNA. Gene 1985;38(1-3):65-72. PubMed: 3905517 ","","Fri Apr 7 10:32:09 MDT 2000","1","","3","PG0135" "PG0122","158164","159210","1047","ATGACTAATAATATAGGGCAAGAAATAATGCCCGCGGATAAGTCTGACAGATGGAAATCAGTAGCTAAGGTCATTATTCCTCTCGCCATAGGCGGTCTGCTCCTCTGGTTGGTGTACCGCAAAATGGATTTCTCCGCCATTGGCAAGATCGTCCGCGACGGTGTCAATTACTACATCATAGCTTTCTCTCTCTTGTTCGGATTGGCCGCCAACTGTATACGCGGCCTGCGCTGGCAACTCCTCATAGAACCTTTGGCTTCTCCTCATCCACGGAAAATCAATGCCATTCTGACTACTTTGGGCAATTACACGGTCAATATGGCTCTGCCCCGTGCCGGAGAATTTTGGCGATGCGCGGAAGAAAGCCGCTACGAGAAAATACCTTTCCCCCAACTCCTCGGTACGCTTTTTATGGACAGGATCATGGACTTGGTGATGGTCGGACTTATCACATTGAGTATCATGATGGGCTTTCAAGGGTTTTTCTCCGCTTTTTTCGCTCGCAATCCACAACTGACACAAGGCTTTTTCACCATTTTCAGTTCCATCTGGCTATACGTTGTTGTTGTAGGTATCGGGCTACTTTTCTTCTTGCTCTATAAATACCTCTCACACGTAGGCCCCATTCGCAAAGTAGCAGCACTCATCGGTAGGATACTGGAGGGGCTTCGGTCTATCTGGCATATGGAGCACAAGTGGCTCTTCATCTTATATTCCATCCTCTTGTGGGTAGGATATTTCTTTTACTTCTACACCACATTCTTTGCTTTCGACTTTACACGATCGTTGGGGATGGGAGTGGGGTTGATCAGCTTCGCCATGAGCAGCATAGCCGTAGCCGTACCCGTACAGGGGGGCGTAGGGCCGTGGCACTTCATGGTTATTGCTACTCTTGTGGCTTTCGGCGTGACGAAAGAAGATGCCGGAGCGTTTGCCTTGGTGGTACACACGACTCAAACCGTTTGGACTACGGCCGCCGGGTTCGTGGCTATCGGCTTGCTTCCTTTTGTCAATAAGAAATACGATCGCATAAAACAGTCAAACAAT","10.60","13.34","39313","MTNNIGQEIMPADKSDRWKSVAKVIIPLAIGGLLLWLVYRKMDFSAIGKIVRDGVNYYIIAFSLLFGLAANCIRGLRWQLLIEPLASPHPRKINAILTTLGNYTVNMALPRAGEFWRCAEESRYEKIPFPQLLGTLFMDRIMDLVMVGLITLSIMMGFQGFFSAFFARNPQLTQGFFTIFSSIWLYVVVVGIGLLFFLLYKYLSHVGPIRKVAALIGRILEGLRSIWHMEHKWLFILYSILLWVGYFFYFYTTFFAFDFTRSLGMGVGLISFAMSSIAVAVPVQGGVGPWHFMVIATLVAFGVTKEDAGAFALVVHTTQTVWTTAAGFVAIGLLPFVNKKYDRIKQSNN","158164 159210","TIGR ID: PG0136","conserved hypothetical protein; possible dolichol-P-glucose synthetase","Inner membrane, Cytoplasm","Matches in gapped BLAST to gi:53712072 from Bacteroides fragilis YCH46.","
InterPro
IPR006741
Family
Accessory gene regulator B
SM00793\"[156-342]Tno description
noIPR
unintegrated
unintegrated
signalp\"[1-40]?signal-peptide
tmhmm\"[21-39]?\"[55-73]?\"[144-166]?\"[180-200]?\"[233-251]?\"[261-281]?\"[286-304]?\"[318-338]?transmembrane_regions


","BeTs to 3 clades of COG0392COG name: Predicted integral membrane proteinFunctional Class: RThe phylogenetic pattern of COG0392 is AMTk-QVce-----gp-----Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Mar 1 10:25:29 2005","Tue Mar 1 10:25:29 2005","Fri Sep 10 18:00:15 2004","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Feb 21 14:04:17 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Feb 21 14:04:17 MST 2001","34539999","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","Kuwahara T, Yamashita A, Hirakawa H, Nakayama H, Toh H, Okada N, Kuhara S, Hattori M, Hayashi T, Ohnishi Y.Genomic analysis of Bacteroides fragilis reveals extensive DNA inversions regulating cell surface adaptation.Proc Natl Acad Sci U S A. 2004 Oct;101(41):14919-24.PMID: 15466707","Tue Mar 1 10:25:29 2005","Tue Mar 1 10:25:29 2005","1","","3","PG0136" "PG0123","159244","160695","1452","ATGTCAACAGAGATCAAAACCCTCAAACCACAAGCTGTCTGGGAGTACTTCTACGACCTGACACAAATACCCCGACCTACCGGACAGATGGACGAGGTGACCAAGTACGTATTCGACTTCGGTAAGAGGCTTGGTTTGGAGACCGAGCAGGACGAGGTGGGCAATGTCATCATTCGCAAGCCGGCCACACCGGGCATGGAAAACAAACCGATCGTGACCCTCCAATCGCACTTGGATATGGTGCCTCAAAAGAATTCGGACATCGATCATGATTTCACCAAAGACCCCATCGATGCATATATCGACGGAGAGTGGGTGAAAGCTCGAGGCACTACTCTGGGAGCCGATAACGGTATCGGAGTGGCTTATGCCATGGCGGCTATGGCAGACCCAATGCTCAAACATGGTCCGCTGGAAGCTCTTTTCACTATTAATGAAGAAGTGGGAATGGACGGTGCCAATGGTCTCAAGCCCGGGTTCTCTCGTGGTGACATCCTGCTCAATATAGATTCGGAGGAAGAAGGCAAGCTCTTCGTAGGCTGTGCGGGAGGTATTGATGTCAATGTCACGCTCGAATATAAGGAGGAAGAGCTGGTTTCGGACGAAGAAATAGGCGTAAAGATATCTTTGACAGGACTCAAAGGCGGACATTCGGGTGTCGATATTCACCTCGGACGTGCCAATGCCAATAAACTGATGTTCAGATTCTTGAAAGAGGCTGTAGGATTCTATGGTGCTCGCTTGGCATGGGTAGAGGGAGGATCGCTCCGCAATGCTATTCCGCGCGAAGCGTTTGCCGTTATCACCATTCAGGAAGAAGAGGCCGAAGCTGTCTGGGAACTGGTATCCGACTACCAGGATTTGTTCCGTAAGGAATTCAGCGGCATAGAGGAAAACATCAAGTTCGAGGCAAGTCGTATCGAATGTCCCCGAATGATTATTCCCGAAGAGATCCAAGACTGTCTGATCAATGCCGTGGAAGCCTGCGTCAATGGCCCGCAGTCCATGCTCCAAGATTTCCCCGGTACGGTAGAGTCATCATCCAATCTGGCGTTGATCACGGCTAAGGAAGGGTCAATCTCCGTACGTTTCCTGGTGCGTAGCTCTTCCGAATCGCACAAGATGTGGGTAGCATCGGCCATCGAGAGCGTTTTCTCATTGGCAGGAGCACGAGTGGAATTCGACGCCTCGTACAACGGCTGGCAACCTAATATCCAGTCGCACATTCTCGAAGTGATGAGCAAAGTCTTCGAAGAGTATTACGGCCAAAAGCCCGAAGTACAGGTGATGCATGCCGGTCTGGAATGCGGTATCATCCAAGGCGTAATGCCGGATATGGACATGATCTCGGTAGGTCCCGAACTCCAATCGCCACACTCTCCGGACGAAAGGATTCATATCGAATCCGTAGCTCGCACATGGGAAGTACTGGTAAAAGTACTGGAGCGAGTG","4.50","-32.76","53557","MSTEIKTLKPQAVWEYFYDLTQIPRPTGQMDEVTKYVFDFGKRLGLETEQDEVGNVIIRKPATPGMENKPIVTLQSHLDMVPQKNSDIDHDFTKDPIDAYIDGEWVKARGTTLGADNGIGVAYAMAAMADPMLKHGPLEALFTINEEVGMDGANGLKPGFSRGDILLNIDSEEEGKLFVGCAGGIDVNVTLEYKEEELVSDEEIGVKISLTGLKGGHSGVDIHLGRANANKLMFRFLKEAVGFYGARLAWVEGGSLRNAIPREAFAVITIQEEEAEAVWELVSDYQDLFRKEFSGIEENIKFEASRIECPRMIIPEEIQDCLINAVEACVNGPQSMLQDFPGTVESSSNLALITAKEGSISVRFLVRSSSESHKMWVASAIESVFSLAGARVEFDASYNGWQPNIQSHILEVMSKVFEEYYGQKPEVQVMHAGLECGIIQGVMPDMDMISVGPELQSPHSPDERIHIESVARTWEVLVKVLERV","159244 160695","TIGR ID: PG0137","aminoacyl-histidine dipeptidase (peptidase d)","Cytoplasm","Several hits in gapped BLAST to aminoacyl-histidine dipeptidase (pepD) sequences, e.g., residues 3-484 are 44% similar to the enzyme from E.coli (gb|AAG54562.1).This sequence is similar to BT4045.","
InterPro
IPR001160
Family
Peptidase M20C, Xaa-His dipeptidase
PR00934\"[81-100]T\"[102-120]T\"[136-153]T\"[160-178]T\"[208-225]T\"[253-272]T\"[365-383]T\"[430-446]T\"[452-474]TXHISDIPTASE
PIRSF016599\"[2-484]TXaa-His_dipept
TIGR01893\"[8-484]Taa-his-dipept
InterPro
IPR002933
Family
Peptidase M20
PF01546\"[73-483]TPeptidase_M20
InterPro
IPR011650
Domain
Peptidase M20, dimerisation
PF07687\"[208-297]TM20_dimer
noIPR
unintegrated
unintegrated
G3DSA:3.40.630.10\"[8-482]TG3DSA:3.40.630.10
PTHR11014\"[8-305]T\"[397-484]TPTHR11014
PTHR11014:SF2\"[8-305]T\"[397-484]TPTHR11014:SF2
SSF53187\"[8-484]TSSF53187
SSF55031\"[214-312]TSSF55031


","BeTs to 3 clades of COG2195COG name: Di- and tripeptidasesFunctional Class: EThe phylogenetic pattern of COG2195 is --------EB-H----o----Number of proteins in this genome belonging to this COG is 2","***** PR00934 (X-His dipeptidase (M25) signature) with a combined E-value of 2.4e-86. PR00934A 81-100 PR00934B 102-120 PR00934C 136-153 PR00934D 160-178 PR00934E 208-225 PR00934F 253-272 PR00934G 365-383 PR00934H 430-446 PR00934I 452-474","Residues 20-147 are 60% similar to a (PROTEIN HYDROLASE DESUCCINYLASE) protein domain (PD001449) which is seen in PEPD_ECOLI.Residues 149-484 are 38% similar to a (AMINOACYL-HISTIDINE DIPEPTIDASE XAA-HIS X-HIS) protein domain (PD024579) which is seen in PEPD_ECOLI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Apr 24 17:42:01 MDT 2001","Mon Jan 5 09:53:07 2004","Wed Apr 4 11:39:48 MDT 2001","Wed Feb 21 14:11:43 MST 2001","Wed Feb 21 14:11:43 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 5-484 are 43% similar to residues 3-482 of PG0489, also a predicted pepD sequence. The segment, residues 42-149, are 34% similar to residues 51-185 of PG0407, aminotripeptidase/peptidase T.","Wed Apr 4 11:44:19 MDT 2001","Wed Feb 21 14:11:43 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 17 to 484 (E-value = 2.1e-35) place PG0123 in the Peptidase_M20 family which is described as Peptidase family M20/M25/M40 (PF01546)","Wed Apr 4 11:39:48 MDT 2001","34540000","","","","","","1","","3","PG0137" "PG0124","160813","161691","879","ATGAAAGCATTTGTATTCCCCGGTCAGGGAGCACAGTTCGTAGGAATGGGAAAAGACCTGTACGAACAGAACCCCGAGGCCAAAGCATATTTTGAAAAAGCCAATGAGATATTAGGCTTTCGCATTACGGACATCCTCTTCAACGGCACGGCAGAGGAGCTGAAACAAACCAAAGTGACCCAGCCGGCGATCTTCCTCCACTCGGTGATTCTGGCCAAGACGATGGGCGAAGACTTCCGTCCCGATATGGTGGCAGGCCATTCGCTCGGAGAGTTTTCGGCATTGGTTGCAGCAGGTGCCATGACCTTCGAAGATGGTCTTCGTCTCGTATCGAAACGTGCCATGGCCATGCAGAAAGCATGCGAAGTACGCCCCTCGACTATGGCGGCTGTACTGGGTCTGCCTGATGAAAAGGTGGAAGAAATCTGTGCCCAAGTGACCGATGAAGTTGTCGTACCGGCCAACTACAACTGCCCGGGACAGATCGTTATATCCGGTTCGGTAGAAGGAGTGGACAGAGCTTGCGAACTGCTCAAGGAAGCCGGAGCCAAGCGTGCTCTTAAGCTCGCTGTCGGTGGAGCATTCCATTCCCCTCTGATGGAACCGGCTCGTGAAGAGCTGGCAAAAGCCATCGAGGAGACTACGATCAGTCAGCCGATCTGCCCCATCTATCAGAACGTAACGGCTTCTGCCGTCACCGATCCGGCAGAGATTAAAAAGAACCTGATAGCACAGCTGACGGCACCGGTTCGCTGGACACAGAGTGTGCTGAATATGACAGCCGATGGTGCCGACCACTTTATGGAGTTAGGCCCCGGAAATGTATTGCAGGGTTTGGTGAAGAAAATTGCTCCTGAAGCGACAACGGAAGGACGTCAG","5.00","-8.25","31466","MKAFVFPGQGAQFVGMGKDLYEQNPEAKAYFEKANEILGFRITDILFNGTAEELKQTKVTQPAIFLHSVILAKTMGEDFRPDMVAGHSLGEFSALVAAGAMTFEDGLRLVSKRAMAMQKACEVRPSTMAAVLGLPDEKVEEICAQVTDEVVVPANYNCPGQIVISGSVEGVDRACELLKEAGAKRALKLAVGGAFHSPLMEPAREELAKAIEETTISQPICPIYQNVTASAVTDPAEIKKNLIAQLTAPVRWTQSVLNMTADGADHFMELGPGNVLQGLVKKIAPEATTEGRQ","160765 161691","TIGR ID: PG0138","malonyl CoA-acyl carrier protein transacetylase","Cytoplasm","Numerous significant hits in gapped BLAST to malonyl-CoA acyl carrier protein tranacetylase sequences, e.g. residues 3-283 are 48% similar to FABD_BACSU (gi|7404378) of B. subtilis and 46% similar to the enzyme from B.halodurans (gi|10175112). This sequence is orthologous to CT238 and to BT0789.","
InterPro
IPR001227
Domain
Acyl transferase region
G3DSA:3.40.366.10\"[3-286]TAc_transferase_reg
InterPro
IPR004410
Family
Malonyl CoA-acyl carrier protein transacylase
TIGR00128\"[1-287]TfabD
InterPro
IPR014043
Domain
Acyl transferase
PF00698\"[3-210]TAcyl_transf_1
noIPR
unintegrated
unintegrated
PTHR10982\"[3-287]TPTHR10982
PTHR10982:SF4\"[3-287]TPTHR10982:SF4
SSF52151\"[1-287]TSSF52151
SSF55048\"[124-192]TSSF55048


","BeTs to 10 clades of COG0331COG name: (acyl-carrier-protein) S-malonyltransferaseFunctional Class: IThe phylogenetic pattern of COG0331 is ----YqvceBRhuj----inxNumber of proteins in this genome belonging to this COG is 1","***** PF00698 (Acyl transferase domain) with a combined E-value of 3.4e-08. PF00698B 4-17","Residues 4-281 are 48% similar to a (SYNTHASE TRANSFERASE POLYKETIDE PROTEIN ACID FATTY) protein domain (PD000287) which is seen in O34463_BACSU.","","Tue Jun 12 17:41:02 MDT 2001","","Tue Jun 12 17:41:02 MDT 2001","Tue Jun 12 17:41:02 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Tue Jun 12 17:41:02 MDT 2001","Tue Jun 12 17:41:02 MDT 2001","","","Wed Mar 22 11:09:47 MST 2000","Wed Dec 3 09:20:54 2003","Tue Jun 12 17:41:02 MDT 2001","Wed Dec 3 09:20:54 2003","Wed Dec 3 09:20:54 2003","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Feb 21 15:47:27 MST 2001","-58% similar to PDB:1MLA THE ESCHERICHIA COLI MALONYL-COA:ACYL CARRIER PROTEIN TRANSACYLASE AT 1.5-ANGSTROMS RESOLUTION. CRYSTAL STRUCTURE OF A FATTY ACID SYNTHASE COMPONENT (E_value = 7.0E_58);-58% similar to PDB:2G1H Structure of E.coli FabD complexed with glycerol (E_value = 7.0E_58);-58% similar to PDB:2G2O Structure of E.coli FabD complexed with sulfate (E_value = 7.0E_58);-58% similar to PDB:2G2Y Structure of E.coli FabD complexed with malonate (E_value = 7.0E_58);-58% similar to PDB:2G2Z Structure of E.coli FabD complexed with malonyl-CoA (E_value = 7.0E_58);","","","Residues 3 to 293 (E-value = 1.6e-26) place PG0124 in the Acyl_transf_1 family which is described as Acyl transferase domain (PF00698)","Tue Jun 12 17:41:02 MDT 2001","34540001","","","","","","1","","3","PG0138" "PG0125","163231","161879","1353","ATGCTCCGGATGAAATACTGTCTCCTCCCTGCCCTCATTGCCTTTCTGGCCTTTCTGCCGGTCCGATCGTCCTATGCCATAGGTCGTTACACTCCGGCAGACTCTACCCAAGAGCTTCGCGATGCAGCCCGTCGCCTCCTGCCCTCTTCTTCCTTGGACAAGGATTTGGAGAGACTCCTCCGCACTTGGCATAAAGGATATTCCACCAAGACAAAACGTGGCGAGCGTCCGTGCATCAATTCCGATACGGGTCCTTATACATCGGACTCCGTGTACATCCGGCGACTTTCCGCCCTGCCATCGGCTGTACCCATACAATTCAACCCTGCCGTCAAGCAGTGCATCAAGCTCTACACCGAGGAACGTCGTCGCCTTGTCCGCTATATGCTCTCGCTCGCCGACCTGTATTTCCCTCAGATCGAAGAGACACTCGACCGTCATAACCTCCCGATCGAGCTGAAGTACCTGACCATCGTGGAGTCGGCTCTCAACCCTACGGCAGTATCGCCGGCCGGAGCAGCCGGTATCTGGCAGTTCATGCTGGCTACGGGCAAGATATACGGACTCACTATAAACAGCCTCGTCGACGAACGGCTGGATCTGCAGAAAAGTACAGAGGCTGCCTGCCGCTACTTCAAGGACATGTACGACCTCTATCGCGACTGGCTCCTCTGCATCGCGGCTTATAACTGCGGACTCGGCAATGTGAACAAAGCCATCCGAATGTCCGGTGGCAAGACCGACTTCTGGGAGATCTATCCCTACCTTCCTCGCGAAACGCGGAACTACATCCCGCTCTTCATCGGTGCGTACTATGCCATGCACTACCATATCGAACATGAGATCTGTGCCGGAGAGACCGGCGTTCCTTTGGCTACGGATACGATTATGCTGTCCCGACAAGTATCTTTCGATCGCATTCGTCTATTGTCCGGTGTGAGCAACGACGAATTGCAACTGCTCAACCCTCAATACAAAAGGGGGATCATCCCCGGTAATACCCAGCTGTGCCGACTACGCCTTCCCGTCGCTTCCATCAAGAAATTGGACAAGGTTCGCGATTCGCTTTATTCCCCCGACTTGGAGGCTTCGGTATCGGATTTCCCTGAGCAAGGCGGACAACACTCGGGAGGATCGGGACGAACCGCCATCTTCCATAATGTCAAGCAAGGTGAGACGCTCTTGTCCATCGCCAAACGTTATGGCACTACGGTAGCAGCCATTAAGAGGGCAAACGGCTTGAAGTCCTCCTCCGTCAAGCCCGGTCAGAGGCTGCAAATCACTAAAAGTTCGGCTTCCGGCACCAAGAAAAAGAGCAAGTACAGTGCCAAGCGAAAGTCCCGCAGGAGGAAA","10.50","28.32","50877","MLRMKYCLLPALIAFLAFLPVRSSYAIGRYTPADSTQELRDAARRLLPSSSLDKDLERLLRTWHKGYSTKTKRGERPCINSDTGPYTSDSVYIRRLSALPSAVPIQFNPAVKQCIKLYTEERRRLVRYMLSLADLYFPQIEETLDRHNLPIELKYLTIVESALNPTAVSPAGAAGIWQFMLATGKIYGLTINSLVDERLDLQKSTEAACRYFKDMYDLYRDWLLCIAAYNCGLGNVNKAIRMSGGKTDFWEIYPYLPRETRNYIPLFIGAYYAMHYHIEHEICAGETGVPLATDTIMLSRQVSFDRIRLLSGVSNDELQLLNPQYKRGIIPGNTQLCRLRLPVASIKKLDKVRDSLYSPDLEASVSDFPEQGGQHSGGSGRTAIFHNVKQGETLLSIAKRYGTTVAAIKRANGLKSSSVKPGQRLQITKSSASGTKKKSKYSAKRKSRRRK","163231 161879 [Shorter 162 903 99]","TIGR ID: PG0139","membrane-bound lytic murein transglycosylase D precursor (regulatory protein DNIR)","Outer membrane, Periplasm, Extracellular","Several hits in gapped BLAST to membrane-bound lytic murein transglycosylase D proteins, e.g. residues 105-427 are 30% similar to the protein from P. aeruginosa (gbAAG05201.1). Residues 133-427 are 33% similar to MLTD_ECOLI (gbAAC73316.1).","
InterPro
IPR000189
Active_site
Prokaryotic transglycosylase, active site
PS00922\"[156-184]?TRANSGLYCOSYLASE
InterPro
IPR002482
Domain
Peptidoglycan-binding LysM
PF01476\"[386-428]TLysM
SM00257\"[385-428]TLysM
InterPro
IPR008258
Domain
Lytic transglycosylase, catalytic
PF01464\"[137-253]TSLT
noIPR
unintegrated
unintegrated
G3DSA:1.10.530.10\"[136-282]TG3DSA:1.10.530.10
G3DSA:3.10.350.10\"[382-430]TG3DSA:3.10.350.10
PTHR21666\"[74-237]TPTHR21666
PTHR21666:SF10\"[74-237]TPTHR21666:SF10
SSF53955\"[134-294]TSSF53955
SSF54106\"[382-430]TSSF54106


","BeTs to 7 clades of COG0741COG name: Soluble lytic murein transglycosylase and related regulatory proteinsFunctional Class: MThe phylogenetic pattern of COG0741 is -----QVcEB-HUJ--oL--xNumber of proteins in this genome belonging to this COG is 1","***** IPB000189 (SLT domain) with a combined E-value of 4e-06. IPB000189A 160-184","Residues 135-232 are 50% similar to a (PROTEIN TRANSGLYCOSYLASE LYTIC MUREIN PRECURSOR) protein domain (PD003175) which is seen in O67414_AQUAE.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Apr 24 17:54:12 MDT 2001","Fri Jul 25 14:28:40 2008","Tue Apr 24 17:50:55 MDT 2001","Wed Feb 21 15:57:03 MST 2001","Wed Feb 21 15:57:03 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Jul 25 14:28:40 2008","No significant hits to the PDB database (E-value < E-10).","","","Residues 137 to 253 (E-value = 1.7e-24) place PG0125 in the SLT family which is described as Transglycosylase SLT domain (PF01464)Residues 386 to 428 (E-value = 2.8e-16) place PG0125 in the LysM family which is described as LysM domain (PF01476)","Fri Jul 25 14:28:40 2008","34540002","","","","","","1","","3","PG0139" "PG0127","163948","163244","705","ATGTCCGGAAGTCGTTGGAGAATTGTCGTTTTGTTCCTCTGCCTTTGTCTTTCTCAGGCAGCGGCACAGAGCGTCGTCCCCGACAGTATCGGGCGGCCGGCGGCGAGTGCGGCCGATTCGGCGGCCACGAAGCTCCCCGATACGCTCCGAGTGCAGACGCTTTCCCCGCCGGCCTCTACAGCATCCTCCCGAGACCTCCGGACAGCCAAGGCGTGGAAACCCAATCCCACCCGTGCACTCCTCTACTCGGCCCTCCTGCCGGGGTCGGGTCAGATCTACAATCGCAAGTACTGGAAGCTGCCGATCGTATGGGGCGCATTCACCGGATGCACTTATGCCATCCTGTGGAACAACAAGACGTACACCGAGTATCGCAAAGCCTATGCCGACTTCATGGGCGGCGATCCGTCGCAAACGGCCTGGCACAACTTCCTCCCCTACGGAGCCGATCCTGCCGATTATGTCAATAGCGAGCAGCTCAAAGCTCGTCTCAAGCGCGGCACGGAGTACTACCGTCGCAACAGGGATTTGAGTATCATCATTACCCTCGGTGTCTACTTCCTGACGATGTTGGATGCCTATGTGGATGCCGAATTGTTCGATTTCAACATCTCTCCCGACCTCTCTTTTCATTTCAGTCCGATGGTGGGCACAGACGATAAGTCCGGCTTTTTCCGTTATGGAGTTAGCTGCGGTTTCACTTTT","9.60","6.28","26229","MSGSRWRIVVLFLCLCLSQAAAQSVVPDSIGRPAASAADSAATKLPDTLRVQTLSPPASTASSRDLRTAKAWKPNPTRALLYSALLPGSGQIYNRKYWKLPIVWGAFTGCTYAILWNNKTYTEYRKAYADFMGGDPSQTAWHNFLPYGADPADYVNSEQLKARLKRGTEYYRRNRDLSIIITLGVYFLTMLDAYVDAELFDFNISPDLSFHFSPMVGTDDKSGFFRYGVSCGFTF","163948 163244 [Shadowed by 162]","TIGR ID: PG0140","conserved hypothetical protein","Outer membrane, Extracellular","Its nearest neighbor in the NR database is gi:29349408 from Bacteroides thetaiotaomicron VPI-5482.","
noIPR
unintegrated
unintegrated
signalp\"[1-22]?signal-peptide
tmhmm\"[9-27]?\"[97-117]?\"[177-195]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Sep 10 15:48:21 2004","Tue Mar 1 10:29:51 2005","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Sep 10 15:48:21 2004","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540003","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Tue Mar 1 10:31:00 2005","","1","","3","PG0140" "PG0128","164837","163971","867","ATGAAGCATACGAAGAAAACGCTCGGTCGTGGCCTGGACTCCCTCCTCGATGCGGAGGTCATAGGGTCTTCTTCCATCAGCGAAGTGGCCATCAGCGATATATACCCCAATCCCGATCAACCGCGCCGGACTTTCGAGGAGGAGTCCCTGAAAGAACTGGCCGCTTCGCTCCGTTCGATAGGATTGGTACAGCCCATCACACTACTGAAGAAGTCCGCCGGCGACTATATGATCATCTCCGGAGAACGCCGCTGGCGTGCGGCCCGAATGGCCGGTATGACCACCCTGCCGGCATACATCAAGACGGAAGAGGACGAACATGTGATGGAGATGGCACTGATCGAAAACATCCAGCGCGAAGACCTCAACGCCATCGAAATCTCTCTGGCCTACCAGAAGCTCATAGAGACGTACGACCTCACACAGGAGGAACTCAGCACCCGAGTGGGCAAGAAGCGCACCACGATCAGCAACTACCTGCGCCTCCTCAAGCTCCCGGGCGAGATACAGATAGGTCTGACCCAGAAGAAAATAGATATGGGGCATGCCCGCGCCTTGCTCAGTATCCCCGATCCCGAGCATCAGCTTGCCCTCTATGCCGAGATCATCAGGCAGGGACTGAGTGTACGTGCCGTCGAAAGTCTGGCGGCGCACTACCGCGAAGAAGGTGCCGATTCGCCCGCCAAGCAGAAGAAAACCAAGCAGTCCCTGCCGGAAGAATACCGCCTGCTCACGGGGCAGTTGTCCCGATTCTTCCGGACGAAAGTCAAGCTCGACTGCGACGCCAAGGGCAAAGGCAAGCTGACCATTCCCTTCGCATCGGAAGAAGAGCTGGAGCGAATCATGGCCCTGCTCGAGCGTATCCGC","8.40","2.19","32636","MKHTKKTLGRGLDSLLDAEVIGSSSISEVAISDIYPNPDQPRRTFEEESLKELAASLRSIGLVQPITLLKKSAGDYMIISGERRWRAARMAGMTTLPAYIKTEEDEHVMEMALIENIQREDLNAIEISLAYQKLIETYDLTQEELSTRVGKKRTTISNYLRLLKLPGEIQIGLTQKKIDMGHARALLSIPDPEHQLALYAEIIRQGLSVRAVESLAAHYREEGADSPAKQKKTKQSLPEEYRLLTGQLSRFFRTKVKLDCDAKGKGKLTIPFASEEELERIMALLERIR","164837 163971","TIGR ID: PG0141","chromosome partitioning protein (stage O sporulation protein, SPOJ)","Cytoplasm","Numerous hits in gapped BLAST to chromosome partitioning proteins, e.g. residues 5-282 are 38% similar to this protein in C.burnetii (Y10436). Residues 6-285 are 36% similar to SPOJ_BACSU (D26185).","
InterPro
IPR003115
Domain
ParB-like nuclease
PF02195\"[27-117]TParBc
SM00470\"[27-117]TParB
InterPro
IPR004437
Family
ParB-like partition protein
TIGR00180\"[22-203]TparB_part
noIPR
unintegrated
unintegrated
SSF109709\"[109-221]TSSF109709
SSF110849\"[26-119]TSSF110849


","BeTs to 10 clades of COG1475COG name: Predicted transcriptional regulatorsFunctional Class:  KThe phylogenetic pattern of COG1475 is amtK-Q--eBr-uj--OlinxNumber of proteins in this genome belonging to this COG is 1","***** BP02248 (PROTEIN PLASMID REPB REPRESSOR DNA-BINDING REPLICATION) with a combined E-value of 3.6e-19. BP02248A 48-69 BP02248B 75-99 BP02248C 115-128","Residues 28-109 are 40% similar to a (PROTEIN PLASMID REPB DNA-BINDING) protein domain (PD002248) which is seen in Q50201_MYCLE.Residues 112-285 are 39% similar to a (PROTEIN PLASMID CHROMOSOME PARTITIONING) protein domain (PD006237) which is seen in O07327_STRCO.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Feb 21 16:19:22 MST 2001","Wed Feb 21 16:19:22 MST 2001","Wed Feb 21 16:13:43 MST 2001","Wed Feb 21 16:13:43 MST 2001","Wed Feb 21 16:13:43 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Feb 21 16:13:43 MST 2001","-61% similar to PDB:1VZ0 CHROMOSOME SEGREGATION PROTEIN SPO0J FROM THERMUS THERMOPHILUS (E_value = 3.2E_39);","","","Residues 27 to 117 (E-value = 2.9e-33) place PG0128 in the ParBc family which is described as ParB-like nuclease domain (PF02195)","Wed Feb 21 16:13:43 MST 2001","34540004","Wed Feb 21 16:19:22 MST 2001","","","","","1","","3","PG0141" "PG0129","165621","164848","774","ATGGGTAAAATAATCGCTCTGGCCAATCAGAAAGGCGGTGTAGGCAAGACTACAACGACTATCAATCTGGCAGCTTCGCTCGCTACCTTGGAGAAGAAAGTATTGGTGGTCGACGCCGATCCGCAAGCCAATGCTTCCTCCGGATTGGGCGTGGACATCGCCTCCCTGCAGAACACCGTATACGAATGTCTCGTGTGCAATCTGCCGGTGGCCGAAGCTGTGCAGCCGACTCCCGTGGAGGGGCTGGACATTATCCCTTCGCATATCGATCTGGTCGGTGCAGAGATCGAGATGCTCAACCTGCCGGAGCGCGAGAAAGTGATGCTCCGTCTGCTGCGCGGCATAGCCGATCGGTACGACTACGTCCTCATCGACTGCTCCCCCTCGCTGGGCCTTATCACGGTCAACGCCCTCGTGGCGGCGCATTCCGTCATCATCCCCGTGCAGTGCGAATACTTCGCTCTCGAAGGGATCAGCAAGCTGCTCAATACGATCCGTATCATCAAAAGCAAGCTCAATCCCACACTGGAGATAGAGGGTTTCCTGCTGACCATGTACGACAGCCGCCTGCGGCTGGCCAATCAGATATACGAAGAGGTCAAGAAGCACTTCCGCGAGCTGGTCTTCGATACGGTCATCCAGCGCAACATCAAACTAAGCGAGGCCCCCAGCCACGGTATTCCGGCACTGCTCTACGATGCCGATAGCCGCGGAGCGGTCAATCATATGCAGCTGGCGGCCGAGCTGATCAAAAAGCACAAACAGAAAGGAGCC","6.50","-1.74","28115","MGKIIALANQKGGVGKTTTTINLAASLATLEKKVLVVDADPQANASSGLGVDIASLQNTVYECLVCNLPVAEAVQPTPVEGLDIIPSHIDLVGAEIEMLNLPEREKVMLRLLRGIADRYDYVLIDCSPSLGLITVNALVAAHSVIIPVQCEYFALEGISKLLNTIRIIKSKLNPTLEIEGFLLTMYDSRLRLANQIYEEVKKHFRELVFDTVIQRNIKLSEAPSHGIPALLYDADSRGAVNHMQLAAELIKKHKQKGA","165621 164848","It was noted that MinD, the cell division inhibitor in E. coli, is homologous to the ParA family (Motallebi-Veshareh et al., 1990. PubMed: 2149583.TIGR ID: PG0142","SpoOJ regulator (chromosome partitioning ATPase)","Cytoplasm","Numerous significant hits to SOJ-related proteins from, e.g., B. subtilis (gi: 586852), Rickettsia prowazekii (gi: 7444234), Streptomyces coelicolor A3(2) (gi: 2826875), among others.This protein is similar to pCT05, a predicted plasmid virulence factor, and CT582, both from Chlamydia trachomatis. See also BT4002.","
InterPro
IPR000392
Family
NifH/frxC
PR00091\"[9-22]T\"[31-46]TNITROGNASEII
InterPro
IPR002586
Domain
Cobyrinic acid a,c-diamide synthase
PF01656\"[5-221]TCbiA
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[1-249]TG3DSA:3.40.50.300
PTHR23264\"[4-38]TPTHR23264
PTHR23264:SF1\"[4-38]TPTHR23264:SF1
SSF52540\"[2-254]TSSF52540


","BeTs to 12 clades of COG1192COG name: ATPases involved in chromosome partitioningFunctional Class: DThe phylogenetic pattern of COG1192 is -mtk-q-C-BR-UJgpOlinXNumber of proteins in this genome belonging to this COG is 1","***** IPB000392 (NifH/frxC family) with a combined E-value of 1e-25. IPB000392A 10-48 IPB000392C 136-177 IPB000392D 216-252***** DM01756 (1 kw MIND INHIBITOR DIVISION CONTROL) with a combined E-value of 3.9e-25. DM01756A 22-36 DM01756B 119-161***** IPB000808 (Mrp family) with a combined E-value of 2.6e-12. IPB000808A 1-39","Residues 3-249 are 56% similar to a (PROTEIN ATP-BINDING PLASMID REDUCTASE) protein domain (PD000159) which is seen in SOJ_BACSU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Tue Jul 17 14:40:40 2007","Wed Mar 22 15:31:44 MST 2000","Mon Jan 5 09:38:30 2004","Wed Dec 20 16:01:53 MST 2000","Mon Jan 5 09:38:30 2004","Mon Jan 5 09:38:30 2004","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Wed Dec 20 16:33:36 MST 2000","Tue Jul 17 14:40:40 2007","-65% similar to PDB:1WCV STRUCTURE OF THE BACTERIAL CHROMOSOME SEGREGATION PROTEIN SOJ (E_value = 1.5E_53);-65% similar to PDB:2BEJ STRUCTURE OF THE BACTERIAL CHROMOSOME SEGREGATION PROTEIN SOJ (E_value = 1.5E_53);-64% similar to PDB:2BEK STRUCTURE OF THE BACTERIAL CHROMOSOME SEGREGATION PROTEIN SOJ (E_value = 1.3E_52);-50% similar to PDB:1G3Q CRYSTAL STRUCTURE ANALYSIS OF PYROCOCCUS FURIOSUS CELL DIVISION ATPASE MIND (E_value = 1.8E_22);-50% similar to PDB:1G3R CRYSTAL STRUCTURE ANALYSIS OF PYROCOCCUS FURIOSUS CELL DIVISION ATPASE MIND (E_value = 1.8E_22);","","","Residues 84 to 195 (E-value = 2.8e-37) place PG0129 in the ParA family which is described as ParA family ATPase (PF00991)","Wed Mar 22 15:31:44 MST 2000","34540005","","","Ireton,K., Gunther,N.W. IV. and Grossman,A.D. 1994. spo0J is required for normal chromosome segregation as well as the initiation of sporulation in Bacillus subtilis. J. Bacteriol. 176 (17), 5320-5329. PubMed: 8071208.","","Tue Jul 17 14:40:40 2007","1","","3","PG0142" "PG0130","166715","165840","876","ATGAAAGTAGCACTCATTCAGCAAGCCAACACGGCGGACGTCTGCTCGAACCGGGAGCGGCTGGCAGCGAAGATCCGCGAAGCCGCCCGACGCGGTGCCGAGCTGGTCGTACTCCCGGAACTGCACAACGGGCTTTATTTCTGCCAGACGGAAGACGTGCAGGTGTTCGACCGGGCAGAGACCATCCCGGGACCGAGTACCGATTTCTTCGGCACCATCGCCCGCGAAGCCGGCGTCGTGCTGGTGCTCTCCCTCTTCGAGAAGCGCGCTCCCGGGCTTTACCACAATACGGCCGTCGTGCTGGAGCGGGACGGCACTATCGCAGGGAAGTATCGCAAGATGCACATCCCCGATGACCCTGCCTATTACGAAAAGTTCTATTTCACACCCGGCGACTTGGGCTTTACCCCCATCCCGACGTCCGTCGGATGCCTCGGCGTACTGGTTTGCTGGGATCAGTGGTATCCCGAAGCGGCGCGACTGATGGCCATGCAGGGTGCCGATATACTCATTTACCCCACGGCCATCGGTACCGAGAGTACGGACCTGCCTGCCGAGCAGCTCCGCCAACGTCAGGCGTGGCAGATCGTACAGCGCGGACATGCCGTGGCCAACGGTATTCCCGTGGTGGCGGTGAACAGGGTCGGCCACGAGGCAGACCCTTCAGGCCGCACCGGTGGCATCACGTTCTGGGGCTCCGGATTCGTAGCCGGACCGCAGGGCGAACTGCTGGCCGAGCTGAGCGCAACGGAAGAGGCGGTGGAGGTAGTGGATATAGATCCCTCCCGAACCGAGCAGGTGCGCCGCTGGTGGCCGTTCTTCCGGGATCGGCGGATCGACGCTTTCTCCGGCCTTACGGAGCGTTTCCTTCGCGGC","5.30","-5.97","32338","MKVALIQQANTADVCSNRERLAAKIREAARRGAELVVLPELHNGLYFCQTEDVQVFDRAETIPGPSTDFFGTIAREAGVVLVLSLFEKRAPGLYHNTAVVLERDGTIAGKYRKMHIPDDPAYYEKFYFTPGDLGFTPIPTSVGCLGVLVCWDQWYPEAARLMAMQGADILIYPTAIGTESTDLPAEQLRQRQAWQIVQRGHAVANGIPVVAVNRVGHEADPSGRTGGITFWGSGFVAGPQGELLAELSATEEAVEVVDIDPSRTEQVRRWWPFFRDRRIDAFSGLTERFLRG","166715 165840","TIGR ID: PG0143","hydrolase/beta-alanine synthase","Cytoplasm","Several hits in gapped BLAST to hydrolase and beta-alanine synthase sequences. Residues 1-290 are 58% similar to a beta-alanine synthase sequence from Xylella fastidiosa (AE004053) and to a probable hydrolase from Campylobacter jejuni (AL139076).This sequence is similar to BT0875.","
InterPro
IPR003010
Domain
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
G3DSA:3.60.110.10\"[3-288]TNtlse/CNhydtse
PF00795\"[2-175]TCN_hydrolase
PS50263\"[1-283]TCN_HYDROLASE
SSF56317\"[1-288]TNtlse/CNhydtse
noIPR
unintegrated
unintegrated
PIRSF001253\"[1-290]TNitrilase
PTHR23088\"[85-291]TPTHR23088


","BeTs to 11 clades of COG0388COG name: Predicted amidohydrolaseFunctional Class: RThe phylogenetic pattern of COG0388 is A-tkYQVCEBR-UJ-------Number of proteins in this genome belonging to this COG is 2","***** IPB000132 (Nitrilase / cyanide hydratase family) with a combined E-value of 5.7e-10. IPB000132A 1-43 IPB000132B 54-104 IPB000132C 115-169 IPB000132E 232-247***** IPB001110 (Uncharacterized protein family UPF0012) with a combined E-value of 7.5e-08. IPB001110A 111-119 IPB001110B 144-167 IPB001110C 193-209 IPB001110D 232-241","Residues 1-241 are 56% similar to a (PROTEIN HYDROLASE NITRILASE ALIPHATIC AMIDASE PUTATIVE) protein domain (PD000957) which is seen in Q9ZL86_BBBBB.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Feb 22 14:31:50 MST 2001","Wed Dec 3 09:46:46 2003","Mon May 21 16:53:08 MDT 2001","Thu Feb 22 14:31:50 MST 2001","Thu Feb 22 14:31:50 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 22 14:31:50 MST 2001","-51% similar to PDB:1J31 Crystal Structure of Hypothetical Protein PH0642 from Pyrococcus horikoshii (E_value = 2.9E_27);-44% similar to PDB:1F89 Crystal structure of Saccharomyces cerevisiae Nit3, a member of branch 10 of the nitrilase superfamily (E_value = 3.4E_20);-47% similar to PDB:1ERZ CRYSTAL STRUCTURE OF N-CARBAMYL-D-AMINO ACID AMIDOHYDROLASE WITH A NOVEL CATALYTIC FRAMEWORK COMMON TO AMIDOHYDROLASES (E_value = 2.4E_18);-40% similar to PDB:1FO6 CRYSTAL STRUCTURE ANALYSIS OF N-CARBAMoYL-D-AMINO-ACID AMIDOHYDROLASE (E_value = 4.2E_18);-40% similar to PDB:2GGK The mutant A302C of Agrobacterium radiobacter N-carbamoyl-D-amino-acid amidohydrolase (E_value = 9.3E_18);","","","Residues 2 to 175 (E-value = 1.5e-61) place PG0130 in the CN_hydrolase family which is described as Carbon-nitrogen hydrolase (PF00795)","Mon May 21 16:53:08 MDT 2001","34540006","","","","","","1","","3","PG0143" "PG0131","167758","166736","1023","ATGACAAAGAGACTATTCCTGCCCGAATGGGCACCGCAAGAGGCCGTACAATTGACCTGGCCTCACGACCGAACCGACTGGGCTTATATGCTCGACGAGGTGGAAACCTGCTTCGTCCGCATAGCCACCGCCATACTCCGCCACGAGCGACTGATAGTCGTTTGCCCCGATCGCAAGCGGGTGTTCGGCCTGCTGCCTCCCGAGCTGCACCACCGGCTCTACTGCTTCGAGCTGCCCTCGAACGATACATGGGCGCGCGACCACGGAGGCATTTCCCTCCTCGCCGACGGCCGTCCGATGATAGCCGACTTCGCCTTCAACGGCTGGGGCATGAAGTTTGCCGCCCATCACGACAACCTCATCACGAGACGGCTCCACGCCCTGGGCCTGTTCGCCGAAGGAGTTACCCTGGACAATCGCCTCGCCTTCGTCCTCGAAGGAGGAGCACTGGAGACGGATGGCGAAGGTACTTTGCTGACCACGGACAGCTGCCTCTTCGAGCCGAACCGCAATGCCGGCCTGAGCCGCACGGCCATTATCGACACGCTGAAAGAGAGCCTCGGCGTCAGCCGCGTACTCTCCCTCCGCCACGGAGCCTTGGCCGGCGACGACACCGACGGGCACATCGACACGTTGGCGCGGTTCGTCGACACCCGTACCATCGTCTATGTCCGCTCGGAAGATCCCTCGGACGAGCACTACTCCGACCTCACGGCCATGGAGCAGGAGCTGAAGGAGCTGCGCCGCCCGGACGGACAGCCGTACCGGCTCGTGCCGCTGCCCATGGCGGAAGCTCTGTACGACGGAGCGGACAGGCTGCCCGCCACCTATGCCAACTTCCTCATCATCAACGGGGCAGTACTCGTGCCCACCTACGATTCGCACCTCGATGCCGTCGCCCTCTCGGTGATGCAGGGGCTGTTTCCCGATAGAGAGGTCATCGGCATCGACTGCCGTCCGCTCGTCAAGCAGCATGGCAGTCTCCACTGCGTCACGATGCAGTACCCCCAAGGATTCATACGC","5.40","-11.89","38286","MTKRLFLPEWAPQEAVQLTWPHDRTDWAYMLDEVETCFVRIATAILRHERLIVVCPDRKRVFGLLPPELHHRLYCFELPSNDTWARDHGGISLLADGRPMIADFAFNGWGMKFAAHHDNLITRRLHALGLFAEGVTLDNRLAFVLEGGALETDGEGTLLTTDSCLFEPNRNAGLSRTAIIDTLKESLGVSRVLSLRHGALAGDDTDGHIDTLARFVDTRTIVYVRSEDPSDEHYSDLTAMEQELKELRRPDGQPYRLVPLPMAEALYDGADRLPATYANFLIINGAVLVPTYDSHLDAVALSVMQGLFPDREVIGIDCRPLVKQHGSLHCVTMQYPQGFIR","167794 166736","TIGR ID: PG0144","conserved hypothetical protein","Cytoplasm","Several hits in gapped BLAST to conserved hypothetical proteins, e.g., residues 6-340 are 46% similar to an conserved hypothetical protein from Xylella fastidiosa (gb|AAF85241.1). Residues 7-334 are 43% similar to a conserved hypothetical from H.pylori (gb|AAD07122.1).","
InterPro
IPR007466
Family
Porphyromonas-type peptidyl-arginine deiminase
PF04371\"[4-336]TPAD_porph
noIPR
unintegrated
unintegrated
G3DSA:3.75.10.10\"[8-336]TG3DSA:3.75.10.10
SSF55909\"[5-340]TSSF55909


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 7-334 are 40% similar to a (PROTEIN PUTATIVE A638R) protein domain (PD041198) which is seen in O24890_HELPY.","","Tue Jun 12 17:41:47 MDT 2001","","Tue Jun 12 17:41:47 MDT 2001","Tue Jun 12 17:41:47 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Tue Jun 12 17:41:47 MDT 2001","Tue Jun 12 17:41:47 MDT 2001","","","Thu Feb 22 14:36:44 MST 2001","Tue Jun 12 17:47:04 MDT 2001","Thu Feb 22 14:36:44 MST 2001","","Thu Feb 22 14:36:44 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 22 14:36:44 MST 2001","-95% similar to PDB:1ZBR Crystal Structure of the Putative Arginine Deiminase from Porphyromonas gingivalis, Northeast Structural Genomics Target PgR3 (E_value = );-57% similar to PDB:2CMU CRYSTAL STRUCTURE OF A PUTATIVE PEPTIDYL-ARGININE DEIMINASE (E_value = 1.1E_65);-52% similar to PDB:1XKN Crystal Structure of the Putative Peptidyl-arginine Deiminase from Chlorobium tepidum, NESG Target CtR21 (E_value = 4.4E_54);-44% similar to PDB:2EWO X-ray structure of putative agmatine deiminase Q8DW17, Northeast Structural Genomics target SmR6. (E_value = 8.4E_29);-44% similar to PDB:2JER AGMATINE DEIMINASE OF ENTEROCOCCUS FAECALIS CATALYZING ITS REACTION. (E_value = 4.2E_28);","","","Residues 4 to 336 (E-value = 2.3e-131) place PG0131 in the PAD_porph family which is described as Porphyromonas-type peptidyl-arginine deiminase (PF04371)","Tue Jun 12 17:41:47 MDT 2001","34540007","","","","","","1","","3","PG0144" "PG0132","168495","168112","384","ATGTACATCGTACTGACTATTCTCATCCTGCTCATATCGCTCTTCCTTATTCTGGTCGTAGTGGTACAGAACTCCAAAGGGGGCGGCTTGGCAGCCGGCTTCGCATCCAGCAATCAGATCATGGGCGTCCGCAAGACTACCGATTTCCTCGAGAAGGCCACTTGGTGGTCGGCCGGTATCATTGCCGTTCTGGCCATCGTTTCTACTCACTTCCTCCACACGGGAAAGGTCGATGAGAGCCAAAACGTCCTGAAGGAAACCCTGGACAAGAAGGTGAAGGAAGAAAAGAACTCTGCAGTGATCAACTTCGGTGGAGATGCCGCTGCTACGGAATCTGCCCGGCCCGCGACCGGAGAGGCCACTCCCGAGGAGGGGCAGGCACAA","5.80","-1.53","13584","MYIVLTILILLISLFLILVVVVQNSKGGGLAAGFASSNQIMGVRKTTDFLEKATWWSAGIIAVLAIVSTHFLHTGKVDESQNVLKETLDKKVKEEKNSAVINFGGDAAATESARPATGEATPEEGQAQ","168495 168112 [Shadowed by 171]","NO TIGR ID corresponds to this gene.","hypothetical protein","Inner membrane, Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR004692
Family
Preprotein translocase SecG subunit
PF03840\"[2-73]TSecG
TIGR00810\"[2-72]TsecG: preprotein translocase, SecG subunit
noIPR
unintegrated
unintegrated
signalp\"[1-27]?signal-peptide
tmhmm\"[5-25]?\"[53-73]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Feb 22 14:38:01 MST 2001","","Thu Feb 22 14:38:01 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 22 14:38:01 MST 2001","-50% similar to PDB:2O3A Crystal structure of a protein AF_0751 from Archaeoglobus fulgidus (E_value = );-50% similar to PDB:176L PROTEIN FLEXIBILITY AND ADAPTABILITY SEEN IN 25 CRYSTAL FORMS OF T4 LYSOZYME (E_value = );-52% similar to PDB:1Z45 Crystal structure of the gal10 fusion protein galactose mutarotase/UDP-galactose 4-epimerase from Saccharomyces cerevisiae complexed with NAD, UDP-glucose, and galactose (E_value = );-51% similar to PDB:1TZT T. maritima NusB, P21 (E_value = );-51% similar to PDB:1TZU T. maritima NusB, P212121 (E_value = );","","","Residues 2 to 73 (E-value = 1.8e-08) place PG0132 in the SecG family which is described as Preprotein translocase SecG subunit (PF03840)","Thu Feb 22 14:38:01 MST 2001","","","","","","","1","","3","" "PG0133","167971","168546","576","TTGAGCCTTGTCCCGGGGCGTGCGGCGAGCGGCACCCTGCCAAACAAAACGTCTTTGCCCTCAAGCCTCGGCTCAAAGACAAAGACGTCTGTCGATCCCCGTATCTCCTGCAAGGGATATGGAAGGGGCCGGTCCTCCTTATTGTGCCTGCCCCTCCTCGGGAGTGGCCTCTCCGGTCGCGGGCCGGGCAGATTCCGTAGCAGCGGCATCTCCACCGAAGTTGATCACTGCAGAGTTCTTTTCTTCCTTCACCTTCTTGTCCAGGGTTTCCTTCAGGACGTTTTGGCTCTCATCGACCTTTCCCGTGTGGAGGAAGTGAGTAGAAACGATGGCCAGAACGGCAATGATACCGGCCGACCACCAAGTGGCCTTCTCGAGGAAATCGGTAGTCTTGCGGACGCCCATGATCTGATTGCTGGATGCGAAGCCGGCTGCCAAGCCGCCCCCTTTGGAGTTCTGTACCACTACGACCAGAATAAGGAAGAGCGATATGAGCAGGATGAGAATAGTCAGTACGATGTACATCTTTATATTTTGTTTTTGTCGTTAATAATCAACTTTTCTAAGAATCGAATT","6.70","-1.04","20792","LSLVPGRAASGTLPNKTSLPSSLGSKTKTSVDPRISCKGYGRGRSSLLCLPLLGSGLSGRGPGRFRSSGISTEVDHCRVLFFLHLLVQGFLQDVLALIDLSRVEEVSRNDGQNGNDTGRPPSGLLEEIGSLADAHDLIAGCEAGCQAAPFGVLYHYDQNKEERYEQDENSQYDVHLYILFLSLIINFSKNRI","167971 168546","TIGR ID: PG0145","hypothetical protein","Outer membrane, Cytoplasm","No hit found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","","","Thu Feb 22 14:39:06 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 22 14:39:06 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Feb 22 14:39:06 MST 2001","34540008","","","","","","1","","3","PG0145" "PG0134","169205","168501","705","ATGACGACTAACGATCTGTACGCCTACATGGAGCACCCCTCGCGGCTTTCGGCTGACACGCTGCCCGAGATGAAAGCCCTGTACGAGGCCTATCCCTACTGCTCCACCTTCGTCTTCCTATACCTATATAATATGTATGTGGTGCAGGACGTGCGCTATGCTTCGGAGCTGCGCCGGCTGGCACCCTATCTGCCGGACAGGCGCAAGCTGTACCTGCTCGTGGAGCAATATACGCATCCGGAGCAGCTGCAACCCGCCTCGGCCGAAAAGGAGCCGGACGCCTTCTCGCTCATCGATGACTTCCTCGACGAAATGACCCGAAGCGGAGCCGACCTGCCTTCGGAGATTTCTTACGGAGGAGCGAGCGGTATCCCCTCGGCTTCGGACTACTTCGCCGCCACGTCACCGGCCGATCAGGCCGAACCGTCCCGCAGCATGCCGGTCTTGTCCGTGCAGGCAGCCGGCACACCGGCCGAGAGCGCACCTCCGGCAGCGAAAGATCCGGCCCCGATCGCCCCGGCGGACGAGCTGGACGAAGGGCTCTTCACCGAGACCCTCGCACGTATATACATCAAGCAGGGACGTTACGATAAGGCACTGAGGATAATAAAGACCATCAGTTTGAATTATCCGGAAAAAAACCTTTACTTTGCGGATCAAATTCGATTCTTAGAAAAGTTGATTATTAACGACAAAAACAAAATA","4.50","-10.55","26433","MTTNDLYAYMEHPSRLSADTLPEMKALYEAYPYCSTFVFLYLYNMYVVQDVRYASELRRLAPYLPDRRKLYLLVEQYTHPEQLQPASAEKEPDAFSLIDDFLDEMTRSGADLPSEISYGGASGIPSASDYFAATSPADQAEPSRSMPVLSVQAAGTPAESAPPAAKDPAPIAPADELDEGLFTETLARIYIKQGRYDKALRIIKTISLNYPEKNLYFADQIRFLEKLIINDKNKI","169205 168501","TIGR ID: PG0146","conserved hypothetical protein","Periplasm, Cytoplasm","Its nearest neighbor in the NR database is gi:29349785 from Bacteroides thetaiotaomicron VPI-5482.","
noIPR
unintegrated
unintegrated
tmhmm\"[30-48]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Mar 1 10:34:02 2005","Tue Mar 1 10:34:02 2005","Thu Feb 22 14:40:04 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 22 14:40:04 MST 2001","-58% similar to PDB:1CNE STRUCTURAL STUDIES ON CORN NITRATE REDUCTASE: REFINED STRUCTURE OF THE CYTOCHROME B REDUCTASE FRAGMENT AT 2.5 ANGSTROMS, ITS ADP COMPLEX AND AN ACTIVE SITE MUTANT AND MODELING OF THE CYTOCHROME B DOMAIN (E_value = );-58% similar to PDB:1CNF STRUCTURAL STUDIES ON CORN NITRATE REDUCTASE: REFINED STRUCTURE OF THE CYTOCHROME B REDUCTASE FRAGMENT AT 2.5 ANGSTROMS, ITS ADP COMPLEX AND AN ACTIVE SITE MUTANT AND MODELING OF THE CYTOCHROME B DOMAIN (E_value = );-48% similar to PDB:1D8Y CRYSTAL STRUCTURE OF THE COMPLEX OF DNA POLYMERASE I KLENOW FRAGMENT WITH DNA (E_value = );-58% similar to PDB:2CND STRUCTURAL STUDIES ON CORN NITRATE REDUCTASE: REFINED STRUCTURE OF THE CYTOCHROME B REDUCTASE FRAGMENT AT 2.5 ANGSTROMS, ITS ADP COMPLEX AND AN ACTIVE SITE MUTANT AND MODELING OF THE CYTOCHROME B DOMAIN (E_value = );-48% similar to PDB:1KLN DNA POLYMERASE I KLENOW FRAGMENT (E.C.2.7.7.7) MUTANT/DNA COMPLEX (E_value = );","","","No significant hits to the Pfam 11.0 database","Thu Feb 22 14:40:04 MST 2001","34540009","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Tue Mar 1 10:35:38 2005","","1","","3","PG0146" "PG0135","169757","169221","537","ATGGACTGGAATAGAACCCTCGGGCGATACAGCCTTTCCGCTCTTGCGGCGGTGCTTATCGTCCTGCTGACCTGCTCGGCATGCAGCATCTCCTACAGCTTCAACGGAGGTGCTCTGGACTATAGCCGCATCAAAACGCTTTATATGCCGGATGTGACCAATCAGGCCACCCGCGTATATCCCCCGTTGGCGCAGACTATGACCGAAGCCCTCCAAAACCATTTTACGCGCCGTACCAAGCTCGAAATGGCACGAACCAACGATGCCGACATGATCATCGAGGTGGTCATCACTAATTACGACTTCGCTCCCCTCGCCGTACAGGACAACGATCTGGCCGCACGCACCAAGGTAACCTTATCCATACAGGTGCACTACGAGAACAAGGCCCTCCCCGAACAGAACTTCGATCGGGACTTTACGTCTTCCACGGACTTCGACAGCAGCGAGCAGCTGGTGGACGTACAAGACGCCCTGCTGGCCAATATGGTCGACGACTTGGTGAAGCAGGTGTATAACGCTACGGTAGAGAACTGG","4.40","-8.62","20173","MDWNRTLGRYSLSALAAVLIVLLTCSACSISYSFNGGALDYSRIKTLYMPDVTNQATRVYPPLAQTMTEALQNHFTRRTKLEMARTNDADMIIEVVITNYDFAPLAVQDNDLAARTKVTLSIQVHYENKALPEQNFDRDFTSSTDFDSSEQLVDVQDALLANMVDDLVKQVYNATVENW","169757 169221","TIGR ID: PG0147","hypothetical protein","Outer membrane, Periplasm, Cytoplasm","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-27]?signal-peptide
tmhmm\"[15-35]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","","","Thu Feb 22 14:42:19 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 22 14:42:19 MST 2001","-47% similar to PDB:1O7D THE STRUCTURE OF THE BOVINE LYSOSOMAL A-MANNOSIDASE SUGGESTS A NOVEL MECHANISM FOR LOW PH ACTIVATION (E_value = );-62% similar to PDB:1H54 MALTOSE PHOSPHORYLASE FROM LACTOBACILLUS BREVIS (E_value = );-54% similar to PDB:1SXJ Crystal Structure of the Eukaryotic Clamp Loader (Replication Factor C, RFC) Bound to the DNA Sliding Clamp (Proliferating Cell Nuclear Antigen, PCNA) (E_value = );","","","No significant hits to the Pfam 11.0 database","Thu Feb 22 14:42:19 MST 2001","34540010","","","","","","1","","3","PG0147" "PG0136","170997","169747","1251","ATGAGCACCAATATAGATGTACAACAGATCAAACAGCGTTTCGGCATCATCGGTAGCAGTCCGCTGATGGAACATGCCATACGAGTGGCAGCACAGGTGGCTCCTACCGACATGTCCGTCCTCGTGACGGGGGAGAGCGGTTCGGGGAAAGAGTTCTTCCCACAGATAATCCACTACTACAGCGCCCGGAAACATCATAGCTACATTGCAGTCAATTGCGGAGCCATCCCCGAAGGAACCATCGATTCCGAGCTGTTCGGACACCGCAAAGGTTCCTTTACCGGAGCCGTATCGGATCGCAAGGGGTACTTCGAAGAAGCATCCGGCGGCACGATCTTTCTGGACGAAGTGGGCGAACTGCCTTTGCCCACGCAGGCGAGGCTGCTGAGGGTGCTGGAGACGGGCGAGTTCATCCCCGTAGGAGCCAGCCAGTCGCAGAAGACGGATGTCCGTATCGTAGCGGCGACGAATGTGAACCTCAAGGAGGCGGTAGCGAACGGGAAGTTCCGGGAAGACCTCTTCTTCCGGCTCAATACGGTACCGATCGAGGTGCCTGCGCTGCGTATGCGACCGGACGACGTGCCCTTGCTTTTTCGCCGATTCGCCGCCGACAGCGCCGAGAAGTATCGGATGCCTCCGCTGCGCCTATCGGACGAAGCCCGTACCATATTAATGCGTTACCGCTGGCCCGGCAATGTGCGAGAGCTGCGCAATATAACCGACAGGCTGAGCATCCTGGAGGAGGAGCGGACGGTATCGGCAGAGACCATCACTCGCTACCTGGACGCTGAGGGGATGCAAGACCTCCACCCCGTCGTGATCCGACGGAACGAAACGACCGAAGCGGACAAACAAATCCCCCATTACGAGCGCGAAATCATCTACCAGGTGCTATACGATATGAAGAAAGAGATAGCCGATTTGAAGGGGATGATGAACCGCCTGGCGCACCACGAACAGCCCTCATGGCCTGTAGGGTCGGACGTCTGGGGCAACGACGACAAGCGCACCGCAGATCCGAAGTGGGGCGTCAGCACGCACAAGGCCCCCATCGCGAACGCGGCAGAACCCGTGGAGCCGATACAGGAAGCCAGCGAATACACCGAGGATCCGGTTTCGCTGGAGGAGGTAGAGAAGAAAATGATTTCCCTTGCATTGGAACGCCACGGCGGAAGGCGCAAGCAGACAGCCGAGGAACTGAAGATTTCGGAGCGGACACTATACCGTAAAATCAAGGAGTATGGACTGGAA","6.20","-5.34","47219","MSTNIDVQQIKQRFGIIGSSPLMEHAIRVAAQVAPTDMSVLVTGESGSGKEFFPQIIHYYSARKHHSYIAVNCGAIPEGTIDSELFGHRKGSFTGAVSDRKGYFEEASGGTIFLDEVGELPLPTQARLLRVLETGEFIPVGASQSQKTDVRIVAATNVNLKEAVANGKFREDLFFRLNTVPIEVPALRMRPDDVPLLFRRFAADSAEKYRMPPLRLSDEARTILMRYRWPGNVRELRNITDRLSILEEERTVSAETITRYLDAEGMQDLHPVVIRRNETTEADKQIPHYEREIIYQVLYDMKKEIADLKGMMNRLAHHEQPSWPVGSDVWGNDDKRTADPKWGVSTHKAPIANAAEPVEPIQEASEYTEDPVSLEEVEKKMISLALERHGGRRKQTAEELKISERTLYRKIKEYGLE","171003 169747","TIGR ID: PG0148","nitrogen assimilation regulatory protein (immunoreactive 47 kD antigen PG120)","Cytoplasm","PG0136 corresponds to the previously sequenced gb|AAD33938.1, described as an immunoreactive 47 kD antigen. Numerous significant hits in gapped BLAST to nitrogen assimilation regulatory protein ntrC sequences. Residues 16-257 are 49% similar to NTRC_BRASR (gb|AAA26239.1) of Bradyrhizobium sp., residues 6-257 are 46% similar to ntrC of Azospirillum brasilense.This sequence is similar to BT4375.","
InterPro
IPR002078
Domain
RNA polymerase sigma factor 54, interaction
PF00158\"[16-237]TSigma54_activat
PS00675\"[40-53]TSIGMA54_INTERACT_1
PS00676\"[102-117]TSIGMA54_INTERACT_2
PS00688\"[229-238]TSIGMA54_INTERACT_3
PS50045\"[16-245]TSIGMA54_INTERACT_4
InterPro
IPR002197
Domain
Helix-turn-helix, Fis-type
PR01590\"[380-397]T\"[397-417]THTHFIS
PF02954\"[374-414]THTH_8
InterPro
IPR003593
Domain
AAA+ ATPase, core
SM00382\"[36-179]TAAA
InterPro
IPR009057
Domain
Homeodomain-like
SSF46689\"[358-417]THomeodomain_like
InterPro
IPR014443
Family
Sigma54-dependent transcriptional activator constitutively active
PIRSF006505\"[10-417]TTxn_actv_cns_act
noIPR
unintegrated
unintegrated
G3DSA:1.10.1680.10\"[374-417]TG3DSA:1.10.1680.10
G3DSA:1.10.8.60\"[189-264]TG3DSA:1.10.8.60
G3DSA:3.40.50.300\"[14-188]TG3DSA:3.40.50.300
SSF52540\"[15-261]TSSF52540


","BeTs to 5 clades of COG1221COG name: NtrC family transcriptional regulators, ATPase domainFunctional Class: OThe phylogenetic pattern of COG1221 is -----QvcEB-h-----l---Number of proteins in this genome belonging to this COG is 1","***** IPB002078 (Sigma-54 transcription factor family) with a combined E-value of 1.7e-74. IPB002078A 40-74 IPB002078B 93-142 IPB002078C 167-194 IPB002078D 229-238","Residues 16-241 are 23% similar to a (PHOSPHOGLYCERATE TRANSPORT SYSTEM) protein domain (PD087393) which is seen in PGTA_SALTY.Residues 16-257 are 24% similar to a (NITROGEN ASSIMILATION REGULATORY PROTEIN) protein domain (PD082887) which is seen in P74210_SYNY3.Residues 17-257 are 49% similar to a (PROTEIN ATP-BINDING PROTEASE SUBUNIT REGULATORY HOMOLOG) protein domain (PD000092) which is seen in NTRC_BRASR.","","Tue Jun 12 17:45:18 MDT 2001","","Tue Jun 12 17:45:18 MDT 2001","Tue Jun 12 17:45:18 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Tue Jun 12 17:45:18 MDT 2001","Tue Jun 12 17:45:18 MDT 2001","","","Fri Apr 6 17:51:42 MDT 2001","Mon Jan 5 14:29:02 2004","Thu Dec 21 13:30:42 2000","Mon Jan 5 14:29:02 2004","Mon Jan 5 14:29:02 2004","yes","Fri Feb 20 15:41:32 MST 1998","PG0136 is similar to PG0675, a predicted two-component sensor system regulatory subunit, and to PG0013, a predicted nitrogen assimilation regulatory protein NR-I. Residues 16-279 are 43%, and residues 370-416 are 31%, similar to PG0675. Residues 17-258 are 42%, and residues 364-416 are 45%, similar to PG0013.","Tue Jun 12 17:53:48 MDT 2001","Thu Feb 22 14:51:42 MST 2001","-67% similar to PDB:1OJL CRYSTAL STRUCTURE OF A SIGMA54-ACTIVATOR SUGGESTS THE MECHANISM FOR THE CONFORMATIONAL SWITCH NECESSARY FOR SIGMA54 BINDING (E_value = 9.4E_57);-65% similar to PDB:1NY5 Crystal structure of sigm54 activator (AAA+ ATPase) in the inactive state (E_value = 5.7E_54);-65% similar to PDB:1NY6 Crystal structure of sigm54 activator (AAA+ ATPase) in the active state (E_value = 5.7E_54);-59% similar to PDB:2BJW PSPF AAA DOMAIN (E_value = 1.0E_47);-59% similar to PDB:2C96 STRUCTURAL BASIS OF THE NUCLEOTIDE DRIVEN CONFORMATIONAL CHANGES IN THE AAA DOMAIN OF TRANSCRIPTION ACTIVATOR PSPF (E_value = 1.0E_47);","","","Residues 16 to 237 (E-value = 3.1e-131) place PG0136 in the Sigma54_activat family which is described as Sigma-54 interaction domain (PF00158)Residues 374 to 414 (E-value = 1.5e-16) place PG0136 in the HTH_8 family which is described as Bacterial regulatory protein, Fis family (PF02954)","Mon Jan 5 14:29:02 2004","34540011","","Ross,B., Barr,I., Patterson,M., Agius,C., Rothel,L.,Margetts,M.,Hocking,D. and Webb,E.Porphyromonas gingivalis polypeptides and nucleic acidsPatent: Australia (AU 98/01023)-PCT 10-DEC-1998; CSL Ltd; 45 Poplar Road; R&D; Parkville, Victoria; Australia;","","Thu Feb 22 14:51:42 MST 2001","","1","","3","PG0148" "PG0137","172293","171028","1266","ATGATACAACAGGAACTTTGGATTGCACAGTTGGCTACGGCTTCAGGTGTCGATGTATCGACCTCGAACGAACTATGGTCTCATTACTGTCGTTTGATGGGGCAGTTCCTCACCAAAGGAGACGCTGTACGGCAAGATGGTATCGGCTTGTGGCAGGCTGTAAAAGCGGATGAATATGTAGGAATCCGTCCGGACGGCTCACGTGTGCTGGTACCGCCGAGGATAGAACTCCGGCTGACGTCTTCGGGTGCCTCGGCCATCCGAGAGACGATCCCTCATGCTCTTATAGACTTGGTGCCTTACACGGAGGAAGTCGTGATGCGCTGGTGGAAGGCTATCCCCGAACTGCTTTCGGAGCTTCTCCGAAGAGGACACCCCGTATCCTGGTCGCAGTTCGGACGCTTCGAGCCGGTGAAAGAAGGCGATGCTCTGACAGGATACCGCTTCATCGCAGAAGGAGAGTTGTCGGAGTTGCTCAACAGACCTTTCTCCATGTTCCCCCAAGTCGATTTGTTGCCGACCGGAGAGATACCCGATACCATTACCCAACCGCTTGTCGAAGAAGGGGTTTCGTTCGTTTCATTGCACGAAGAGAGCCAAGAGGAAGTCGCAGAGCCTCAAGAGATCCCCGTCCCAGCCGAAAGCGATACCGATACATCGGTACAGACGGAAGATGATATACTTCCTACACCTGCCGAGGAGAAAGCCTTGACGGAGGAGCCGCTTCCCGATACGGAGGAGGTATCACAGCCGGCAGCGGAGGAGCCTTTCGTCCCGATCGAAGAGCCGGCAGAGAAGAAAGCAAGGAAGCGAAAGAGAGCGAGGACGACCGCTATTGTCTTCTTAGCAGTCCTGATACTGGGTGCTACTGCGGCATACTTGCTACTGTATCGGATGCCTGTCCTCTCGACAAAAGAGCCGGCCCGACAAGAACCTTCCGGCCGGATGTCTTCACCCGTGGATACGATCGCCAAGACGGTCGATACGGTAAAGACCGTACCTGCCGCGACGGATCTCGGCCGGATCGTTATCCGCAAAGGGGACATTTTAGCCCGTATCGCCTTGGAGAAGTATGGCGACCGCGTATTCTGGGTCTATATATATGAAGAGAACAAAGAGAAAATCGCAGATCCCAACAACATTCCTTTGGGTACGGAGCTGGTACTTCCTTTACCTGAGAAGTATGGGATAGATGCGGCCGATACGGCTTCGTTGAGAAGAGCTTTGGCTCTTCAGTTCCGAATAGGAATGGCGAAAGAACGGCAG","4.60","-20.02","46976","MIQQELWIAQLATASGVDVSTSNELWSHYCRLMGQFLTKGDAVRQDGIGLWQAVKADEYVGIRPDGSRVLVPPRIELRLTSSGASAIRETIPHALIDLVPYTEEVVMRWWKAIPELLSELLRRGHPVSWSQFGRFEPVKEGDALTGYRFIAEGELSELLNRPFSMFPQVDLLPTGEIPDTITQPLVEEGVSFVSLHEESQEEVAEPQEIPVPAESDTDTSVQTEDDILPTPAEEKALTEEPLPDTEEVSQPAAEEPFVPIEEPAEKKARKRKRARTTAIVFLAVLILGATAAYLLLYRMPVLSTKEPARQEPSGRMSSPVDTIAKTVDTVKTVPAATDLGRIVIRKGDILARIALEKYGDRVFWVYIYEENKEKIADPNNIPLGTELVLPLPEKYGIDAADTASLRRALALQFRIGMAKERQ","172293 171028","TIGR ID: PG0149","hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR010992
Family
IHF-like DNA-binding
SSF47729\"[1-64]T\"[85-160]TIHF_like_DNA_bnd


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Feb 22 14:52:52 MST 2001","","Thu Feb 22 14:52:52 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 22 14:52:52 MST 2001","-47% similar to PDB:1UIM Crystal Structure of Threonine Synthase from Thermus Thermophilus HB8, Orthorhombic Crystal Form (E_value = );-47% similar to PDB:1UIN Crystal Structure of Threonine Synthase from Thermus Thermophilus HB8, Trigonal Crystal Form (E_value = );-47% similar to PDB:1V7C Crystal structure of threonine synthase from thermus thermophilus hb8 in complex with a substrate analogue (E_value = );-44% similar to PDB:2IUO SITE DIRECTED MUTAGENESIS OF KEY RESIDUES INVOLVED IN THE CATALYTIC MECHANISM OF CYANASE (E_value = );","","","No significant hits to the Pfam 11.0 database","Thu Feb 22 14:52:52 MST 2001","34540012","","","","","","1","","3","PG0149" "PG0138","173634","172333","1302","ATGAGAAGAAACAGAGTAGACGTCATTACGCTTGGGTGCTCCAAGAATCTGGTGGACAGCGAGGTGCTGATGCGCCAGTTCCTGTCCAACGGCTATACCGTGCATCACGATCCGGCTTCGGTATGCGGCGAGATCGTGGTGGTGAATACCTGCGGATTCATAGGCGATGCACAGGAGGAGTCTGTCAATACCATTCTGGAGATGGTGGAGGCGAAGAAGGCCGGACGTATCGGCAGCCTGTACGTAATGGGCTGCTTGAGCGAGCGGTTTCGGGAAGACCTGAAGAAGGAGATACCCGAAGTGGATGCTTACTACGGCAAATTCGACTGGAAGCAACTCATTTCTCATTTGGGGAAGTCTTATTATGCCGAGGCAGAGAACAGGCGCAAACTGACCACTCCGCGGCATTATGCCTATCTGAAAATATCCGAGGGCTGCGATCGCAGCTGTTCGTACTGCGCCATACCGATTATCACCGGCCGGCATCGGTCGCGCCCGATGGAGGACTTAGTCGAAGAGGTACGGATGCTCGTAAAGCATGGGACTCGGGAGTTCCAACTGATTGCTCAGGATCTTACCTTCTACGGCCTCGACCTGTACGGTGCTAACCGTCTGGCAGAACTGACAGCACGTTTGTCCGACATCAAAGGGGTCGAGTGGCTTCGACTGCATTATGCTTATCCGGCACAGTTTCCTCTGGATCTCTTGCCTGTGATGCGTGAGCGGCCTAACGTCTGCAAATACCTCGACATGGCTTTGCAGCACATTAGCGATCCGATGCTCGGACGGATGCGCAGGCGCATTACCAAGGCGGAGACCTACGAACTGATCGAAAGGATCCGAACGGAAGTACCCGGCATCCATCTGCGTACTACGCTCATGACCGGTCACCCGGGCGAGACGGAGAGAGACTTCGAGGAGTTGCTGCAGTTCGTGCGTGACATCCGGTTCGAACGGTTGGGAGCATTCACCTATTCGCACGAGAGCGGCACCTACTGCGACAAGAACTATCAAGACGATATACCCGAATCCGTCAAACAGGAACGTCTTGGCGAACTGATGGCCGTGCAGGAACGTATATCCGCCGCTCATAACGAGGCGAAGATCGGCAGCCGCCTGCATGTGGTCATAGACCGTGCGGAAGATGGCTTCTATGTGGGGCGTACGGAATACGACTCTCCTGAGGTCGATCCCGAGGTACTGATCCCGTTCGTCTCCGGTCAGGAGTTGAATCCCGGGCGGTTTTATATGGCGGAAGTGACCGGTGCAGAGCCTTTCGATCTCTATGCACGTATAGTGGAC","5.80","-9.24","49903","MRRNRVDVITLGCSKNLVDSEVLMRQFLSNGYTVHHDPASVCGEIVVVNTCGFIGDAQEESVNTILEMVEAKKAGRIGSLYVMGCLSERFREDLKKEIPEVDAYYGKFDWKQLISHLGKSYYAEAENRRKLTTPRHYAYLKISEGCDRSCSYCAIPIITGRHRSRPMEDLVEEVRMLVKHGTREFQLIAQDLTFYGLDLYGANRLAELTARLSDIKGVEWLRLHYAYPAQFPLDLLPVMRERPNVCKYLDMALQHISDPMLGRMRRRITKAETYELIERIRTEVPGIHLRTTLMTGHPGETERDFEELLQFVRDIRFERLGAFTYSHESGTYCDKNYQDDIPESVKQERLGELMAVQERISAAHNEAKIGSRLHVVIDRAEDGFYVGRTEYDSPEVDPEVLIPFVSGQELNPGRFYMAEVTGAEPFDLYARIVD","173634 172333","TIGR ID: PG0150","conserved hypothetical protein","Cytoplasm","Several hits in gapped BLAST to conserved hypothetical proteins, e.g., residues 5-431 are 42% similar to an uncharacterized protein from Aquifex aeolicus (gb|AAC06982.1|).This sequence is similar to BT0913.","
InterPro
IPR002792
Domain
Deoxyribonuclease/rho motif-related TRAM
PS50926\"[366-434]TTRAM
InterPro
IPR005839
Family
Protein of unknown function UPF0004
PTHR11918\"[5-378]TUPF0004
TIGR00089\"[5-430]TUPF0004
PS01278\"[140-160]TUPF0004
InterPro
IPR005840
Family
Conserved hypothetical protein 1125
TIGR01125\"[5-430]TCHP1125
InterPro
IPR006638
Domain
Elongator protein 3/MiaB/NifB
SM00729\"[136-355]TElp3
InterPro
IPR007197
Domain
Radical SAM
PF04055\"[140-312]TRadical_SAM
InterPro
IPR013785
Domain
Aldolase-type TIM barrel
G3DSA:3.20.20.70\"[143-346]TAldolase_TIM
InterPro
IPR013848
Domain
Protein of unknown function UPF0004, N-terminal
PF00919\"[5-106]TUPF0004
noIPR
unintegrated
unintegrated
SSF102114\"[99-433]TSSF102114


","BeTs to 14 clades of COG0621COG name: Fe-S oxidoreductases family 1Functional Class: CThe phylogenetic pattern of COG0621 is amtk-QVCEBrhUJ---L-NXNumber of proteins in this genome belonging to this COG is 3","***** IPB001861 (Uncharacterized protein family UPF0004) with a combined E-value of 3.9e-70. IPB001861A 10-26 IPB001861B 43-53 IPB001861C 71-94 IPB001861D 138-183 IPB001861E 184-195 IPB001861F 208-237 IPB001861G 249-268 IPB001861H 289-326","Residues 5-431 are 42% similar to a (PROTEIN BIOSYNTHESIS OXIDASE COPROPORPHYRINOGEN III) protein domain (PD000690) which is seen in Y849_AQUAE.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Feb 22 14:57:58 MST 2001","Thu Dec 4 10:20:48 2003","Mon Apr 2 11:30:37 MDT 2001","Thu Feb 22 14:57:58 MST 2001","Thu Feb 22 14:57:58 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG0138 is similar to two conserved hypothetical proteins: residues 2-434 share 27% identity with PG0904residues 9-390 share 26% identity with PG1942.","Mon Apr 2 16:37:11 MDT 2001","Thu Feb 22 14:57:58 MST 2001","-42% similar to PDB:1OLT COPROPORPHYRINOGEN III OXIDASE (HEMN) FROM ESCHERICHIA COLI IS A RADICAL SAM ENZYME. (E_value = );-49% similar to PDB:1P6G Real space refined coordinates of the 30S subunit fitted into the low resolution cryo-EM map of the EF-G.GTP state of E. coli 70S ribosome (E_value = );-49% similar to PDB:1P87 Real space refined coordinates of the 30S subunit fitted into the low resolution cryo-EM map of the initiation-like state of E. coli 70S ribosome (E_value = );-49% similar to PDB:1VS5 Crystal structure of the bacterial ribosome from escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution. this file contains the 30s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes and is described in remark 400. (E_value = );-49% similar to PDB:1VS7 Crystal structure of the bacterial ribosome from escherichia coli in complex with the antibiotic kasugamyin at 3.5a resolution. this file contains the 30s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes and is described in remark 400. (E_value = );","","","Residues 5 to 106 (E-value = 9.1e-26) place PG0138 in the UPF0004 family which is described as Uncharacterized protein family UPF0004 (PF00919)Residues 140 to 312 (E-value = 8.1e-24) place PG0138 in the Radical_SAM family which is described as Radical SAM superfamily (PF04055)","Thu Dec 4 10:20:48 2003","34540013","","","","","","1","","3","PG0150" "PG0139","174584","173634","951","ATGGGATTATTCGGATTATTCTCGAAAAAGAAAAAAGAGACTTTGGACGAAGGCCTGTCCAAGACCAAAGAAAACGTATTCGCCAAGATCACCCGTGCCGTAGCCGGTAAGAGCAAAGTGGACGATGAGGTCTTGGACGAATTGGAAAACGTGCTGGTGACTTCGGATGTGGGTGTCGATACCACATTGAAGATCATCAAACGTATAGAGGAACGAGTGGCTCGCGACAAATATGTTTCCACCTCCGAGCTGACGACTATCCTCCGTCAAGAGATCGCCTCGCTGCTCACGGAGAACGGATCGGCCGATGGCGACAGCTTCGACCTACCCTCCGGTACCAAACCTTATGTGATCATGGTAGTGGGCGTAAACGGCGTAGGCAAGACCACTACCATCGGCAAGCTGGCACATCGCTTTCGTCAGGCCGGCAAGAGCGTCGTGCTCGGGGCTGCCGATACCTTCCGTGCTGCGGCCGTAGAGCAGTTGGAGATCTGGTCCGAGCGAGTAGGAGTGCCTATCATCAAGCAGCAGATGGGTAGCGATCCGGCTTCGGTGGCTTATGACACAGTCAGTTCGGCCGTGGCTAACGGCGTCGATGTCGTGATCATCGATACAGCCGGACGTCTGCACAATAAGGTCAATCTGATGAACGAGCTGACGAAGATCAAGCGTGTGATGCAGAAGGTAGTGCCCGACGCTCCGCATGAGATTTTATTGGTATTGGACGGATCCACCGGTCAGAATGCTTTCGAACAGGCAAGGCAGTTCACCGCAGCGACTGAAGTGAATGCCCTCGCCGTGACCAAGCTCGACGGGACAGCTAAGGGAGGTGTGGTGATCGGCATATCCGATCAGTTCAAGATACCGGTGAAGTACATTGGCTTGGGTGAGGGCATAGACGACCTGCAGATCTTCCGTAAGAAGGAATTCGTGGACTCTCTCTTTGGCGAA","5.90","-2.26","34167","MGLFGLFSKKKKETLDEGLSKTKENVFAKITRAVAGKSKVDDEVLDELENVLVTSDVGVDTTLKIIKRIEERVARDKYVSTSELTTILRQEIASLLTENGSADGDSFDLPSGTKPYVIMVVGVNGVGKTTTIGKLAHRFRQAGKSVVLGAADTFRAAAVEQLEIWSERVGVPIIKQQMGSDPASVAYDTVSSAVANGVDVVIIDTAGRLHNKVNLMNELTKIKRVMQKVVPDAPHEILLVLDGSTGQNAFEQARQFTAATEVNALAVTKLDGTAKGGVVIGISDQFKIPVKYIGLGEGIDDLQIFRKKEFVDSLFGE","174584 173634","An X-ray crystallographic structure is available (see PubMed: 9002525). The FtsY protein in E. coli appears to be involved in reception and insertion of proteins at the cytoplasmic membrane. TIGR ID: PG0151","signal recognition particle","Inner membrane, Cytoplasm","Many significant hits to predicted cell division proteins from, e.g., Bacillus subtilis (gi: 2633967), Haemophilus influenzae (gi: 1169764), Escherichia coli (gi: 120576), among others.This protein is similar to CT820, a predicted signal recognition particle, and to BT0914.","
InterPro
IPR000897
Domain
GTP-binding signal recognition particle SRP54, GTPase
PD000819\"[134-208]TSRP54
PF00448\"[114-316]TSRP54
PS00300\"[289-302]TSRP54
InterPro
IPR003593
Domain
AAA+ ATPase, core
SM00382\"[114-315]TAAA
InterPro
IPR004390
Family
Cell division transporter substrate-binding protein FtsY
TIGR00064\"[39-315]TftsY
InterPro
IPR013822
Domain
GTP-binding signal recognition particle SRP54, helical bundle
G3DSA:1.20.120.140\"[17-101]TSRP54_helical
PF02881\"[15-97]TSRP54_N
SSF47364\"[9-90]TSRP54
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[108-316]TG3DSA:3.40.50.300
PTHR11564\"[88-317]TPTHR11564
PTHR11564:SF6\"[88-317]TPTHR11564:SF6
SSF52540\"[113-316]TSSF52540


","BeTs to 16 clades of COG0552COG name: Signal recognition particle GTPase FtsYFunctional Class: NThe phylogenetic pattern of COG0552 is amtkyqvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB000897 (SRP54-type protein, GTP-binding domain) with a combined E-value of 1.4e-65. IPB000897A 117-155 IPB000897B 199-222 IPB000897C 234-276","Residues 42-314 are 48% similar to a (PROTEIN SIGNAL RECOGNITION PARTICLE GTP-BINDING) protein domain (PD000819) which is seen in FTSY_HAEIN.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Tue Jan 7 14:21:45 2003","Mon Apr 10 10:49:59 MDT 2000","Thu Dec 4 10:22:38 2003","Tue Jan 7 14:21:45 2003","Thu Feb 22 15:01:12 MST 2001","Thu Feb 22 15:01:12 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 24-31 are 30% similar to PG0996, a predicted signal recognition particle GTPase protein.","Mon Apr 2 11:41:56 MDT 2001","Thu Feb 22 15:01:12 MST 2001","-64% similar to PDB:1FTS SIGNAL RECOGNITION PARTICLE RECEPTOR FROM E. COLI (E_value = 7.5E_69);-62% similar to PDB:1VMA Crystal structure of Cell division protein ftsY (TM0570) from Thermotoga maritima at 1.60 A resolution (E_value = 1.3E_68);-57% similar to PDB:1OKK HOMO-HETERODIMERIC COMPLEX OF THE SRP GTPASES (E_value = 3.4E_53);-56% similar to PDB:1RJ9 Structure of the heterodimer of the conserved GTPase domains of the Signal Recognition Particle (Ffh) and Its Receptor (FtsY) (E_value = 2.9E_52);-57% similar to PDB:2CNW GDPALF4 COMPLEX OF THE SRP GTPASES FFH AND FTSY (E_value = 8.4E_52);","","","Residues 15 to 97 (E-value = 1.7e-13) place PG0139 in the SRP54_N family which is described as SRP54-type protein, helical bundle domain (PF02881)Residues 114 to 316 (E-value = 7.5e-119) place PG0139 in the SRP54 family which is described as SRP54-type protein, GTPase domain (PF00448)","Thu Dec 4 10:22:38 2003","34540014","","","Luirink,J., ten Hagen-Jongman,C.M., van der Weijden,C.C., Oudega,B., High,S., Dobberstein,B. and Kusters,R. 1994. An alternative protein targeting pathway in Escherichia coli: studies on the role of FtsY. EMBO J. 13 (10): 2289-2296. PubMed: 8194520.Gill,D.R. and Salmond,G.P. 1990. The identification of the Escherichia coli ftsY gene product: an unusual protein. Mol. Microbiol. 4 (4): 575-583. PubMed: 2161989.","","Mon Apr 10 10:49:59 MDT 2000","1","","3","PG0151" "PG0140","175747","174614","1134","ATGGCAAAATACCACGACATAGCATCTCCGGCCTACATACTGGAAGAAGATCTGCTAAGGCGCAATCTATCCCTGATTGCGTCCGTAGCCGACCGTACCGGCGTGGAGATCATCCTCGCTTTCAAGGCCTATGCCCTCTGGCGTACCTTCCCGATCATCAGGGAATACGTACCCCACAGTACGGCCAGCTCTGTATGGGAAGCCCGCCTTGCCTTCGAAGAGATGGGGGCACCGGCTCATACATTCAGTCCGGCTTATACGCCGGAGGAGTTTCCGGAGATACTGCGTTATAGCAGTCACGTCACATTCAACTCTCTCAGCCAGTACTACCTGCTTTCGCCCATGGTGAAGAACGTAGGCGTATCGCTCGGACTCAGAATCAACCCCGAATACTCGGCCGTGGAGACCGCGCTCTACAATCCTTGTGCACCGGGTTCGCGATTCGGTGTATCGGCTTCCGAATTGGGCGACACCCTGCCGGAGGGTATCGAGGGTCTGCACTTCCATACGCTTTGCGAGAGCACCGGCTACGAACTGGAGAAGACCCTCAAGATCATTGAGGATCGCTTCGCTTCCGTGCTGGAGCAAGCGCATTGGCTCAATATGGGCGGCGGCCACCTGATGACCCGTCGGGACTATGACGTGGAGCACCTTGTGCAGGTGCTGAACGACTTCTCCCGCCGCCATCCCCATCTGCATCTTATCATGGAGCCGGGCAGTGCTTTCGGCTGGCAGACGGGGTTTCTCAAGAGCACGGTGGTGGACATCGTAGAGCATCAAGGCATTGCCACTGCTATCGTGGATGTGTCCTTCACCTGCCACATGCCGGACTGTCTGGAGATGCCTTACAAACCCGTCATTCGTGGAGCGCATCAGGAGCCGGTACCCGGCCTGCCCACATACAGGATAGGCGGATGCAGCTGTCTGAGCGGCGACTTCATCGGTGACTGGAGTTTCGATCGGCCGTTGCAGGTGGGCGATGAACTGATATTCGAGGACATGCTCCACTACACGACGGTGAAGACGACCATGTTCAACGGTGCACGCCATCCGGACATCGTACTGCTGCGCACCGACGGGAAGAAAGAGGTGTTGCGCCGGTTCGATTATGAGGATTACAAGAACAGAATGAAC","5.70","-12.16","42724","MAKYHDIASPAYILEEDLLRRNLSLIASVADRTGVEIILAFKAYALWRTFPIIREYVPHSTASSVWEARLAFEEMGAPAHTFSPAYTPEEFPEILRYSSHVTFNSLSQYYLLSPMVKNVGVSLGLRINPEYSAVETALYNPCAPGSRFGVSASELGDTLPEGIEGLHFHTLCESTGYELEKTLKIIEDRFASVLEQAHWLNMGGGHLMTRRDYDVEHLVQVLNDFSRRHPHLHLIMEPGSAFGWQTGFLKSTVVDIVEHQGIATAIVDVSFTCHMPDCLEMPYKPVIRGAHQEPVPGLPTYRIGGCSCLSGDFIGDWSFDRPLQVGDELIFEDMLHYTTVKTTMFNGARHPDIVLLRTDGKKEVLRRFDYEDYKNRMN","175747 174614","TIGR ID: PG0152","carboxynorspermidine decarboxylase","Cytoplasm","Several hits in gapped BLAST to carboxynorspermidine decarboxylase sequences, e.g., residues 7-377 are 54% similar to the enzyme from Synechocistis (dbj|BAA17602.1).This sequence is similar to BT0674.","
InterPro
IPR000183
Domain
Orn/DAP/Arg decarboxylase 2
PF00278\"[248-356]TOrn_DAP_Arg_deC
InterPro
IPR005730
Family
Carboxynorspermidine decarboxylase
TIGR01047\"[7-377]TnspC
InterPro
IPR009006
Domain
Alanine racemase/group IV decarboxylase, C-terminal
SSF50621\"[214-370]TRacem_decarbox_C
noIPR
unintegrated
unintegrated
G3DSA:2.40.37.10\"[204-372]TG3DSA:2.40.37.10
PTHR11482\"[121-367]TPTHR11482
SSF51419\"[15-247]TSSF51419


","BeTs to 6 clades of COG0019COG name: Diaminopimelate decarboxylaseFunctional Class: EThe phylogenetic pattern of COG0019 is amt-yQVCebrhUJ-------Number of proteins in this genome belonging to this COG is 2","***** IPB000183 (Orn/DAP/Arg decarboxylases family 2) with a combined E-value of 6.9e-06. IPB000183E 192-211 IPB000183F 232-250 IPB000183G 299-312 IPB000183H 326-346","Residues 7-377 are 54% similar to a (CARBOXYNORSPERMIDINE DECARBOXYLASE NSPC PROTEIN PUTATIVE) protein domain (PD024911) which is seen in P73562_SYNY3.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Feb 22 15:06:56 MST 2001","Tue Dec 2 17:40:55 2003","Tue Apr 24 18:07:33 MDT 2001","Thu Feb 22 15:06:56 MST 2001","Thu Feb 22 15:06:56 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 22 15:06:56 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Apr 24 18:07:33 MDT 2001","34540015","","","","","","1","","3","PG0152" "PG0141","177520","175760","1761","ATGTACAGAACAAATACCTGTGGCGAGTTGCGCCTTTCTCATCTGCAACAAACCGTTACCCTCTGCGGTTGGGTACAGCGCGTGCGCCGCATGGGCGGCATGACCTTTGTAGATCTGCGCGACCGTTACGGTACTACGCAGTTGGTTTTCAACCGTGATTCGGCACCTGCCGAACTATGCGACCGCGCCGAAGACTTGGGACGTGAGTGGGTGATCCGTGCCACGGGCACCGTCATGGAGCGCTCCAGCAAAAATCCGAATATCCCCACCGGCGATATAGAGATAGCAGTCGGAGAAATGGATGTGCTGAACCGCTCCGAAGTGCCGCCTTTCACCATCGAAGACGAGACCGACGGAGGCGATGACCTCCGCATGAAATATCGCTACCTCGACCTGCGCCGCCACTGCGTGCGCTCCAATATGGAACTGCGCCACCGGATGGCTCTGGAGGTGAGGAAGTATCTCGACGGCGAGGGATTCCTCGAAGTAGAGACCCCCATGCTGATCAAGTCCACGCCGGAGGGTGCCCGCGACTTTGTCGTACCCTCTCGGATGAATCCCGGCCAGTTCTACGCTCTCCCCCAGTCGCCTCAGACCTTCAAGCAGCTACTGATGGTAAGCGGCTTCGATCGCTATTTCCAGATCGTGAAGTGCTTCCGCGACGAAGACCTCCGCGCCGACCGCCAGCCTGAGTTTACGCAGATCGACTGCGAAATGAGCTTCGTGGAGCAAGAGGATGTGCTGTCCACCTTCGAGGGTATGGCCAAGCACCTCTTCCGTACCATCCGTCACGTGGAGATTTCGGAAGCCTTCCCCCGTATGACGTGGCACGACGCCATGAAGTACTACGGATCGGACAAGCCCGATACGCGCTTCGATATGCGTTTCGTAGAGCTGATGGATGTGCTGAAAGGCCACGGCTTCAGCGTATTTGACTCCGCAGCTTACATCGGAGGCATCTGTGCCAAGGGAGCTGGCTCTTACACCCGCAAGCAGCTCGATGCTCTGACGGACTTCGTGAAGCGTCCGCAGGTGGGAGCCAAAGGGATGGTATACGCCCGTGTGGAATCGGACGGCAGCGTCAAGAGCAGCGTGGACAAATTCTACACACAAGAGACGCTCCAAGAGCTTCGCCGGACGATGGAGGCAGAACCGGGCGACCTGATTCTGATCCTCAGCGGAGACGACCTCATGAAGACGCGCAAGCAACTGTGCGAACTTCGCCTCGAAGTGGGCTCTCAGCTCGGTCTGCGCGACAAGAATAAATTCTCCTGCCTCTGGGTCGTGGACTTCCCCCTCTTCGAATGGGACGAGGAAACGAAGCGATTCTACGCCATGCACCACCCCTTCACCAGTCCGAAGCCGGAGGACATCCCTCTGCTCGATACCGATCCAGGTGCCGTGCGTGCCAATGCCTACGATATGGTGATCAACGGTGTCGAAGTCGGAGGTGGTTCCATTCGTATTCACGACAGTGCCCTGCAGCAGAAAATGTTCGAGTTGCTCGGCTTTACGCCGGAGAAAGCACAGGAGCAGTTCGGCTTCCTGATGAACGCCTTCAAGTACGGAGCACCTCCTCACGGCGGATTGGCTTACGGCTTAGACCGCTGGGTATCGCTCTTCGCCGGTTTGGACAGCATCCGCGACTGCATCGCCTTCCCGAAGAACAATGCCGGTCGGGATGTCATGATCGACGCCCCCTCTGTCATTGATGAGGCACAGCTCCAAGAGCTGTTCTTGGAACTGATACCGAATGAGAAC","5.10","-16.75","66991","MYRTNTCGELRLSHLQQTVTLCGWVQRVRRMGGMTFVDLRDRYGTTQLVFNRDSAPAELCDRAEDLGREWVIRATGTVMERSSKNPNIPTGDIEIAVGEMDVLNRSEVPPFTIEDETDGGDDLRMKYRYLDLRRHCVRSNMELRHRMALEVRKYLDGEGFLEVETPMLIKSTPEGARDFVVPSRMNPGQFYALPQSPQTFKQLLMVSGFDRYFQIVKCFRDEDLRADRQPEFTQIDCEMSFVEQEDVLSTFEGMAKHLFRTIRHVEISEAFPRMTWHDAMKYYGSDKPDTRFDMRFVELMDVLKGHGFSVFDSAAYIGGICAKGAGSYTRKQLDALTDFVKRPQVGAKGMVYARVESDGSVKSSVDKFYTQETLQELRRTMEAEPGDLILILSGDDLMKTRKQLCELRLEVGSQLGLRDKNKFSCLWVVDFPLFEWDEETKRFYAMHHPFTSPKPEDIPLLDTDPGAVRANAYDMVINGVEVGGGSIRIHDSALQQKMFELLGFTPEKAQEQFGFLMNAFKYGAPPHGGLAYGLDRWVSLFAGLDSIRDCIAFPKNNAGRDVMIDAPSVIDEAQLQELFLELIPNEN","aspartyl-tRNA synthetase","Aspartyl-tRNA synthetase is believed to be ahomodimer and cytoplasmic. Through similarity, itbelongs to class-II aminoacyl-tRNA synthetases.Reaction: ATP + l-aspartate + tRNA(asp) = AMP +pyrophosphate + l-aspartyl-tRNA(asp). *Notice the gene order: aspS-mip-spoU-trxATIGR ID: PG0153","aspartyl-tRNA synthetase","Cytoplasm","Numerous hits in gapped BLAST to aspartyl-tRNA syntheases, e.g. residues 3-583 are 52% similar to the enzyme from B.halodurans (gi10173868).This sequence is similar to CT542 and to BT0872.","
InterPro
IPR002312
Family
Aspartyl-tRNA synthetase, class IIb
PR01042\"[193-205]T\"[210-223]T\"[473-489]T\"[517-531]TTRNASYNTHASP
InterPro
IPR004115
Domain
GAD
PF02938\"[311-404]TGAD
InterPro
IPR004364
Domain
tRNA synthetase, class II (D, K and N)
PF00152\"[120-558]TtRNA-synt_2
InterPro
IPR004365
Domain
Nucleic acid binding, OB-fold, tRNA/helicase-type
PF01336\"[19-103]TtRNA_anti
InterPro
IPR004524
Family
Aspartyl-tRNA synthetase bacterial/mitochondrial type
PTHR22594:SF5\"[90-585]TAspS_bac
TIGR00459\"[1-586]TaspS_bact
InterPro
IPR006195
Domain
Aminoacyl-transfer RNA synthetase, class II
PS50862\"[141-567]TAA_TRNA_LIGASE_II
InterPro
IPR012340
Domain
Nucleic acid-binding, OB-fold
G3DSA:2.40.50.140\"[1-109]TOB_NA_bd_sub
noIPR
unintegrated
unintegrated
G3DSA:3.30.930.10\"[134-585]TG3DSA:3.30.930.10
PTHR22594\"[90-585]TPTHR22594
SSF50249\"[1-107]TNucleic_acid_OB
SSF55261\"[292-418]TSSF55261
SSF55681\"[98-585]TSSF55681


","BeTs to 13 clades of COG0173COG name: Aspartyl-tRNA synthetaseFunctional Class: JThe phylogenetic pattern of COG0173 is ----yqvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** PR01042 (Aspartyl-tRNA synthetase signature) with a combined E-value of 3.2e-33. PR01042A 193-205 PR01042B 210-223 PR01042C 473-489 PR01042D 517-531***** PR00982 (Lysyl-tRNA synthetase signature) with a combined E-value of 4e-08. PR00982A 156-166 PR00982C 201-214 PR00982D 219-236","Residues 29-177 are 45% similar to a (SYNTHETASE AMINOACYL-TRNA PROTEIN LIGASE BIOSYNTHESIS) protein domain (PD002022) which is seen in SYD_THETH.Residues 407-525 are 61% similar to a (SYNTHETASE PROTEIN LIGASE ASPARTATE--TRNA) protein domain (PD006889) which is seen in SYD_THETH.Residues 245-368 are 43% similar to a (SYNTHETASE PROTEIN LIGASE ASPARTATE--TRNA) protein domain (PD037346) which is seen in SYD_BACSU.Residues 178-244 are 83% similar to a (SYNTHETASE AMINOACYL-TRNA PROTEIN LIGASE BIOSYNTHESIS) protein domain (PD000871) which is seen in SYD_AQUAE.Residues 245-384 are 26% similar to a (PROTEIN ORF PUTATIVE KINASE) protein domain (PD000146) which is seen in SYD_BORBU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","Wed Mar 22 15:03:59 MST 2000","Wed Dec 3 09:42:46 2003","Wed Mar 22 15:03:59 MST 2000","Wed Jul 30 12:56:42 2008","Mon Apr 2 11:45:14 MDT 2001","Thu Feb 22 15:09:35 MST 2001","Thu Feb 22 15:09:35 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 16-258 are 25% similar to PG1205, a predicted lysyl-tRNA synthetase.","Mon Apr 2 11:45:14 MDT 2001","Wed Jul 30 12:56:42 2008","-65% similar to PDB:1EFW CRYSTAL STRUCTURE OF ASPARTYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED TO TRNAASP FROM ESCHERICHIA COLI (E_value = 2.5E_154);-65% similar to PDB:1G51 ASPARTYL TRNA SYNTHETASE FROM THERMUS THERMOPHILUS AT 2.4 A RESOLUTION (E_value = 2.5E_154);-65% similar to PDB:1L0W Aspartyl-tRNA synthetase-1 from space-grown crystals (E_value = 2.5E_154);-63% similar to PDB:1C0A CRYSTAL STRUCTURE OF THE E. COLI ASPARTYL-TRNA SYNTHETASE : TRNAASP : ASPARTYL-ADENYLATE COMPLEX (E_value = 1.8E_144);-63% similar to PDB:1EQR CRYSTAL STRUCTURE OF FREE ASPARTYL-TRNA SYNTHETASE FROM ESCHERICHIA COLI (E_value = 1.8E_144);","","","Residues 19 to 103 (E-value = 4.8e-22) place PG0141 in the tRNA_anti family which is described as OB-fold nucleic acid binding domain (PF01336)Residues 120 to 558 (E-value = 2.8e-12) place PG0141 in the tRNA-synt_2 family which is described as tRNA synthetases class II (D, K and N) (PF00152)Residues 311 to 404 (E-value = 6.1e-18) place PG0141 in the GAD family which is described as GAD domain (PF02938)","Wed Dec 3 09:42:46 2003","34540016","","","","","","1","","3","PG0153" "PG0142","178943","177954","990","ATGACTCCCGATCCTCTGTATATGCGCCGTGCCATCGAATTAGCACAGAATGCCGAAGGGTTCACCTCTCCCAATCCGCTTGTCGGAGCAGTCCTTGTGGCTCATGGGCGTATCATCGGTGAGGGCTACCACCACTGTGCCGGCATGCCCCATGCCGAAGTCATCGCCATAAACTCTGTGCGAGACAGGGCTTTGCTCAGAGAAAGTACCCTCTATGTCAGTCTGGAGCCTTGCTCTCATTATGGCAAAACGCCTCCCTGTGCCGAGCTGATCCTTCGGGAGGGCATCCCTCATGTAGTGGTGGCCATGCTCGATCCTTTCCCATCCGTTTCAGGAAGAGGCATCAAGATGTTGCGTGACGCAGGCGTATCGGTCCAAGTGGGACTACTTGCAGAGGAAGCCGAGGAGCTGAATCGGCATTTCCTCACAGCCCAACGGCAACACCGTCCCTATGTCACACTCAAATGGGCAGAGAGTAGCGACGGATTCATTGACGCACTGCGCGACGATGCCTCCACCCCTCCTGTCAGGCTGAGTACACCTCTGACCACACGCTTTGTGCACCATAGACGAATGATACACGATGCCATATTGGTGGGGTTCCGTACCGCTCTTTTGGACAATCCCTCTCTGACGGTTCGGCATTGGTACGGCCGAAATCCGCTACGTGTGGTCACAGATCGCCATCTGGCTCTCCCACGCCACCTCACCCTCTTCGATGGCAGTGTGCCCACACTGGTCTTTACCGAAAAAGAACAACCCTCCGGCTATCCCTCCGCTGTCTCTTTCGTTCGGATCGATCCCTCCCGCCCTCCCGTGGAGCAGATGCTGGCCGAACTGCACGCTCGCGGCATACAGTCGCTGTTAGTGGAGGGAGGTGCCTGTATACTCCGATCTTTCATAGACAGCGGTCTGTACGATGATGTACGTATCGAACACAGCACCATTATCTTAAACGAGGGAGTTCGTGCTCCTCACCTTCCCTCTTAC","7.10","0.91","36604","MTPDPLYMRRAIELAQNAEGFTSPNPLVGAVLVAHGRIIGEGYHHCAGMPHAEVIAINSVRDRALLRESTLYVSLEPCSHYGKTPPCAELILREGIPHVVVAMLDPFPSVSGRGIKMLRDAGVSVQVGLLAEEAEELNRHFLTAQRQHRPYVTLKWAESSDGFIDALRDDASTPPVRLSTPLTTRFVHHRRMIHDAILVGFRTALLDNPSLTVRHWYGRNPLRVVTDRHLALPRHLTLFDGSVPTLVFTEKEQPSGYPSAVSFVRIDPSRPPVEQMLAELHARGIQSLLVEGGACILRSFIDSGLYDDVRIEHSTIILNEGVRAPHLPSY","178943 177954","TIGR ID: PG0155","riboflavin-specific deaminase","Cytoplasm","Several hits in gapped BLAST to riboflavin deaminase sequences, e.g. residues 4-309 are 45% similar to the enzyme from B.halodurans (gi10174171).","
InterPro
IPR002125
Domain
CMP/dCMP deaminase, zinc-binding
PF00383\"[1-103]TdCMP_cyt_deam_1
PS00903\"[51-91]?CYT_DCMP_DEAMINASES
InterPro
IPR002734
Domain
Bacterial bifunctional deaminase-reductase, C-terminal
PF01872\"[150-327]TRibD_C
InterPro
IPR004794
Family
Riboflavin biosynthesis protein RibD
PTHR11079:SF10\"[4-311]TEubact_ribD
TIGR00326\"[8-322]Teubact_ribD
noIPR
unintegrated
unintegrated
G3DSA:3.40.140.10\"[2-147]TG3DSA:3.40.140.10
PTHR11079\"[4-311]TPTHR11079
SSF53597\"[150-323]TSSF53597
SSF53927\"[1-155]TSSF53927


","BeTs to 8 clades of COG0117COG name: Pyrimidine deaminase, riboflavin biosynthesisFunctional Class: HThe phylogenetic pattern of COG0117 is ----yqvcebrhuj----in-Number of proteins in this genome belonging to this COG is 1","***** PF01872 (RibD C-terminal domain) with a combined E-value of 9.9e-22. PF01872A 173-214 PF01872B 280-320","Residues 51-102 are 53% similar to a (PROTEIN DEAMINASE HYDROLASE ZINC) protein domain (PD001793) which is seen in RIBD_AQUAE.Residues 7-48 are 59% similar to a (RIBOFLAVIN DEAMINASE BIOSYNTHESIS PROTEIN RIBD) protein domain (PD009434) which is seen in RIBD_ACTPL.Residues 105-233 are 39% similar to a (RIBOFLAVIN BIOSYNTHESIS REDUCTASE PROTEIN DEAMINASE RIBD) protein domain (PD004302) which is seen in RIBD_AQUAE.Residues 7-125 are 33% similar to a (PROTEIN RIBOFLAVIN BIOSYNTHESIS HYDROLASE) protein domain (PD037656) which is seen in P87241_SCHPO.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Mar 22 11:59:12 MST 2000","Wed Jul 23 12:20:27 2008","Mon Apr 2 12:08:47 MDT 2001","Thu Feb 22 15:26:07 MST 2001","Thu Feb 22 15:26:07 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 2-146 are 32% simialr to PG0666, a predicted cytosine deaminase.","Mon Apr 2 12:08:47 MDT 2001","Wed Jul 23 12:20:27 2008","-59% similar to PDB:2HXV Crystal structure of Diaminohydroxyphosphoribosylaminopyrimidine deaminase/ 5-amino-6-(5-phosphoribosylamino)uracil reductase (TM1828) from Thermotoga maritima at 1.80 A resolution (E_value = 3.1E_57);-56% similar to PDB:2B3Z Crystal structure of a bifunctional deaminase and reductase involved in riboflavin biosynthesis (E_value = 1.0E_55);-56% similar to PDB:2D5N Crystal structure of a bifunctional deaminase and reductase involved in riboflavin biosynthesis (E_value = 1.0E_55);-51% similar to PDB:2G6V The crystal structure of ribD from Escherichia coli (E_value = 3.3E_46);-51% similar to PDB:2O7P The crystal structure of RibD from Escherichia coli in complex with the oxidised NADP+ cofactor in the active site of the reductase domain (E_value = 3.3E_46);","","","Residues 2 to 103 (E-value = 1.2e-31) place PG0142 in the dCMP_cyt_deam family which is described as Cytidine and deoxycytidylate deaminase zinc-binding region (PF00383)Residues 150 to 327 (E-value = 9.7e-22) place PG0142 in the RibD_C family which is described as RibD C-terminal domain (PF01872)","Wed Jul 23 12:20:27 2008","34540017","","","","","","1","","3","PG0155" "PG0143","178968","179846","879","ATGATTACGCTTAACGAAGCTCAACAGCGAATCGAATCGACACTGAACGGTCGATACGACAAGGATGAATTGCGCAGCATCATGCGAGGGCTACTGACCGAAGCAACCGGCCTAAGCCGCTCCGCACTTTTGCTTGCAGACAAAGATACGCTTTTATCGACCGAAGCATCGCAAGCTCTATCTCGCTATCTGGATCGTATGAAGACAGGAATTCCGCTACAGTATGCCGTGGGACATGCGCCTTTCTTCGGGTATGAATTTGCGGTAAATCCTTCTGTGCTGATTCCCCGTCCTGAGACGGAGGAACTGGTGGAGTTGATCCTGCGAAAGGAGAGGCCTGCGGCGGCTTCGCTTTGTCTGCTCGATGTCGGCACGGGCAGCGGATGTCTGGCCATCACATTGGCACGAGAACTTCGAGCCAAAGTATGGGCGATGGATATTTCACCCGATGCTTTAGCTACGGCTCGTACCAATGTCGGAGAAGACGACCGGATATTTTTCTTCGAGGGCGATATTCTTTCTCCCGATAATCGTTGGGACGTACTCCCCCCCGTGGACATTATCGTCAGCAATCCTCCGTACATCATGCCTGCGGAAAGTGCCGATATGGCGTATCATGTGCTGGGACATGAACCGGCCTTGGCTCTCTTTGCGCCCGAGGAGGATCCTCTCCTTTTCTACAAAGCCATTGCCAACCTTTCCGGCAGCGGTAAACTACGCTCCGGCGGACGGCTTTATGTGGAGCTGAATCCGCTGCTGGCCGAAGCCACATGCGAAGTATTTTCGGCCAAAGTGGGATGGTGTGAAGTCCGATTGCACACGGACCTCTCCGGCAAGAGCCGTTTTCTCTCGGCAAAATATTTACCCGCTAACAAAGCA","5.00","-8.21","32154","MITLNEAQQRIESTLNGRYDKDELRSIMRGLLTEATGLSRSALLLADKDTLLSTEASQALSRYLDRMKTGIPLQYAVGHAPFFGYEFAVNPSVLIPRPETEELVELILRKERPAAASLCLLDVGTGSGCLAITLARELRAKVWAMDISPDALATARTNVGEDDRIFFFEGDILSPDNRWDVLPPVDIIVSNPPYIMPAESADMAYHVLGHEPALALFAPEEDPLLFYKAIANLSGSGKLRSGGRLYVELNPLLAEATCEVFSAKVGWCEVRLHTDLSGKSRFLSAKYLPANKA","178950 179846","MD function: was thought to be involved in the oxidation of protoporphyrinogen into protoporphyrin IX. Similarity: belongs to the HEMK family of modification methylases.TIGR ID: PG0156","protoporphyrinogen oxidase (HEMK protein homolog)","Cytoplasm","PG0143 is equivalent to the previously sequenced AB037921 in GenBANK, predicted to be a protoporphyrinogen oxidase. Furthermore, residues 31-228 are 42% similar to HEMK_BACSU (Z99122) of B. subtilis, residues 42-242 are 38% similar to (AP001519) protoporphyrinogen oxidase of Bacillus halodurans.This sequence is similar to CT024.","
InterPro
IPR002052
Domain
N-6 Adenine-specific DNA methylase
PS00092\"[188-194]?N6_MTASE
InterPro
IPR004556
Family
Modification methylase HemK
TIGR00536\"[2-291]ThemK_fam
InterPro
IPR013217
Domain
Methyltransferase type 12
PF08242\"[121-245]TMethyltransf_12
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.150\"[80-284]TG3DSA:3.40.50.150
PTHR18895\"[98-287]TPTHR18895
PTHR18895:SF7\"[98-287]TPTHR18895:SF7
SSF53335\"[2-273]TSSF53335


","BeTs to 16 clades of COG0500COG name: SAM-dependent methyltransferasesFunctional Class: RThe phylogenetic pattern of COG0500 is AMTKYQVCEBRHUJgPOLINXNumber of proteins in this genome belonging to this COG is 7","No significant hit to the Blocks database.","Residues 31-137 are 44% similar to a (PROTEIN METHYLTRANSFERASE TRANSFERASE) protein domain (PD001640) which is seen in HEMK_BACSU.","","Tue Jun 12 17:48:25 MDT 2001","","Tue Jun 12 17:48:25 MDT 2001","Tue Jun 12 17:48:25 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Tue Jun 12 17:48:25 MDT 2001","Tue Jun 12 17:48:25 MDT 2001","","Tue Mar 13 09:34:44 MST 2001","Fri Feb 23 10:22:22 MST 2001","Tue Jun 12 18:10:01 MDT 2001","Tue Mar 13 09:23:39 MST 2001","","Fri Feb 23 10:22:22 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 121-216 are 37% similar to residues 46-147 of PG0983, a probable methylase.","Tue Jun 12 18:10:01 MDT 2001","Fri Feb 23 10:22:22 MST 2001","-53% similar to PDB:1NV8 N5-glutamine methyltransferase, HemK (E_value = 7.3E_23);-53% similar to PDB:1NV9 HemK, apo structure (E_value = 7.3E_23);-53% similar to PDB:1SG9 Crystal structure of hypothetical protein HEMK (E_value = 7.3E_23);-53% similar to PDB:1VQ1 Crystal structure of N5-glutamine methyltransferase, HemK(EC 2.1.1.-) (TM0488) from Thermotoga maritima at 2.80 A resolution (E_value = 7.3E_23);-49% similar to PDB:1T43 Crystal Structure Analysis of E.coli Protein (N5)-Glutamine Methyltransferase (HemK) (E_value = 2.5E_15);","","","No significant hits to the Pfam 11.0 database","Tue Mar 13 09:23:39 MST 2001","34540018","","Akifusa,S., Ansai,T., Takehara,T. and Kusaba,A., Cloning of hemK gene coding for possible protoporphyrinogen oxidasefrom P. gingivalis, Published Only in DataBase (2000) In press.","","Tue Apr 17 10:24:38 MDT 2001","","1","","3","PG0156" "PG0144","179846","180328","483","ATGAAGACAGAGGAGGAACTACTGAATCGGATGCAAGCCTACTGCGCCCGTACGGAACATTGCAGATCAGAAGTGGCAGCCAAACTGCGACAGGCAGGGACAGACGAGCTAATGATAGAGCGGCTGCTGCAGCGGCTTGTGGAAGATCGGTTCATTGATGAGGATCGTTTTGCCCGTGCTTATGCTCGTGACAAATACCGATTCAATGGCTGGGGTCCCAAGCGCATCGCTTTGGAACTGGTCAAACGGCATATTCCGGATTCGATCATCGGTTCGACCTTATTGGATTTGGAGGAGGGAGAAGATAAGATAGAGGATAACCTGCCGCGTCTCTTGGAGCGCAAACTTCGAAGCATAAAGGATACGGACGATCGCGGTCGTCTGCACCGCTTGGTGCGCTGGGCTGTGGGACGAGGATTCGAATACGAACAGGTGATGAGGGAGGCATCACGCCTCCTCCGCAAAGGGTrTGAGGAAGACAGC","7.40","0.64","38617","MKTEEELLNRMQAYCARTEHCRSEVAAKLRQAGTDELMIERLLQRLVEDRFIDEDRFARAYARDKYRFNGWGPKRIALELVKRHIPDSIIGSTLLDLEEGEDKIEDNLPRLLERKLRSIKDTDDRGRLHRLVRWAVGRGFEYEQVMREASRLLRKGXEEDS","179846 180328","TIGR ID: PG0157","hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR003783
Family
Regulatory protein RecX
PF02631\"[29-150]TRecX


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 12-160 are 29% similar to a (PROTEIN REGULATORY RECX YFHG) protein domain (PD013331) which is seen in RECX_STRCO.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","Fri Feb 2 10:30:50 2001","Tue Feb 6 12:59:37 MST 2001","","","Fri Feb 23 10:23:18 MST 2001","","Fri Feb 2 10:30:50 2001","","Mon Feb 12 17:01:33 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Feb 12 17:01:33 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Fri Feb 23 10:23:18 MST 2001","34540019","","","","","","1","","3","PG0157" "PG0145","180315","181052","738","RTGAGGAAGACAGCTAACGGTACGGGCCGGCATATCCGATTGCTGATTCGTAAGGTGTTGGATCTGTTTTTCCCTCGCTATTGTCCTGTATGCGACAGCTTGCTCGCCGAGACGGAGATCGGGGTCTGTCCTCGTTGCATGGTGAGAATGCCACGGTATATCGAAGGGATGCAATATGGATTAGATCGTCTGAATGGGGATGTTTATATCGACGCGCTGTACAGCCTTTTTATTTTCAAAGAGGACGGGGGTGTAAGGCCTATGATACACGCACTAAAATATGGAGGATACAGTGAGATCGGCGAAATGCTCGGACGAATGGCCGGCCGATCCTATCCTTTCCTGTCCAAGGATTACGATCTGATAGTGCCGGTTCCTTTACACCCACGCAAACAACGTAAGCGTGGCTACAATCAGGCACTCCTCATCGCACAAGGATTAAGTCGCGTAACGGGAATACCTGTTCAAGAAGGTTTGCGCAGAAAGGTATATACGGACAGTCAGACCGGACAGTCCTATTCGGAACGAAAGTCAGCCATGAAAGGGAAGTTTGCCCTCTCCCCGAATACGCGCGTGGCCGGTATCCGTGTTCTTTTGGTGGACGATGTGCTGACTACCGGGGCTACGGTACAAGCTGCGGCCGAGCCATTGGCAGAAGCCTTTGCGGCCAAGATCGGTGTATTGGTGGCAGCCGTTACCAAGCGTCCCTCGAATTGGTCTCATTATTCTGATGAGCGA","10.50","13.77","27330","XRKTANGTGRHIRLLIRKVLDLFFPRYCPVCDSLLAETEIGVCPRCMVRMPRYIEGMQYGLDRLNGDVYIDALYSLFIFKEDGGVRPMIHALKYGGYSEIGEMLGRMAGRSYPFLSKDYDLIVPVPLHPRKQRKRGYNQALLIAQGLSRVTGIPVQEGLRRKVYTDSQTGQSYSERKSAMKGKFALSPNTRVAGIRVLLVDDVLTTGATVQAAAEPLAEAFAAKIGVLVAAVTKRPSNWSHYSDER","180315 181052","TIGR ID: PG0158","possible competence protein F (phosphoribosyl transferase)","Cytoplasm","A few hits in gapped BLAST to competence proteins and hypothetical proteins in bacteria. Residues 19-207 are 35% similar to a probable competence protein, ComF, in Deinococcus radiodurans (gbAAF10957.1). Residues 43-236 are 28% similar to a probable phosphoribosyl transferase in Pseudomonas aeruginosa (gbAAG03878.).","
InterPro
IPR000836
Domain
Phosphoribosyltransferase
PF00156\"[90-245]TPribosyltran
InterPro
IPR002375
Family
Purine/pyrimidine phosphoribosyl transferase
PS00103\"[197-209]TPUR_PYR_PR_TRANSFER


","No hit to the COGs database.","***** IPB002375 (Purine/pyrimidine phosphoribosyl transferase) with a combined E-value of 3.6e-07. IPB002375B 194-209","Residues 17-191 are 26% similar to a (HYPOTHETICAL 25.6 KD PROTEIN) protein domain (PD101210) which is seen in Q55603_SYNY3.","","","","","Tue Aug 17 12:52:06 2004","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","Tue Aug 17 12:52:06 2004","Tue Feb 6 13:10:49 MST 2001","","","Tue Apr 24 18:24:55 MDT 2001","Tue Aug 17 12:52:06 2004","Tue Feb 6 13:10:49 MST 2001","Fri Feb 23 10:30:37 MST 2001","Fri Feb 23 10:30:37 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Feb 23 10:30:37 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Apr 24 18:24:14 MDT 2001","34540020","","","","","","1","","3","PG0158" "PG0146","183254","181188","2067","ATGAACAAGACAATCAAGTTTCTTTGCCTTGCGCCGGCAGTAATCGGCGCATTGATGCTGACCGGCTGCAATGGCAATAAGGGTCAGACTAACGATACTGACAGGAAGCGCGAACCGGTACCGGCCATCGACCTCAGTGCCATGGATACATCCGTACGCCCGCAGGACGACTTTTATCGCTACTGCAACGGCAATTGGATGAAAAACAATCCTCTCAAACCTGCTTATAGTCGCTACGGCTCATTCGACATCCTGCACGACAGCACCCTCGAGCGTGTACACCTGATTGTGGACAACCTTGCAGCAGGACAGCATGAAGTCGGCACTAATGAGTATCGTATAGCTACGCTCTATCGTCAAGCTATGGATAGCATCAAACGGAATAAAGACGGAGCAGCCCCTCTGAAGGAAGATCTTCAGAAGATCGAAGCCATTGCGGACAGAGCTGCTATGGTGAAGTATGCCGCTGCTAAGGACAATATGGGTGGAAGCACATTCTTCGGATCGTACGTTTATGCCGACGCCAAGAATAGCGAGATGAACATCTTCCATATCACCCAGACCGGCTTGGCTCTTGACAATCGAGACTACTATCTCAAGCAGGATGCCAAGTCTCAGCAAATACGCGAGGCGTATGTAGCTTATCTGAACAAAATTGCTAAGCTGGCCGGCTACGACGATGAAGCAGCTACCCGTATTGCCAAGAACGCCATGAAGATGGAAACCGAACTGGCACAAATCTGCTACAGCAAAGAAGAACTACGCGATACCCATCGTAACTACAATAAGATGGCAGTGAAGGAGTTTACGAATAAGTACCAAGGCTTTGATTGGACTACTTACCTCGCCGATCGTCAGCTCACCACCCTCGAAGAGTGGGATGTGGAGCAACTCGATTTCTTCAAGAAGTTCGACTCTTGGTTTGCCAAAGCCGATCTGAACGAAATGAGGGACTATCTCCTCGCCGGCACGATCAGCGGTGCAGCAAGCTATCTGAGCGATGACTTCGAGCAAGCTCGTTTCGACTTTTTCGGTAAGACGCTGAGTGGAACCACCGAAATGCATCCTCGCTGGAAACGTTCCGTAGGTATGGTAAGCAGCTTTCTGGGCGAAGCACTGGGCGAAGTTTATGTAAAGCAATACTTCCCACCCGAAGCAAAAGAGCGCATGCTCAAACTCGTCAAGAACCTGCAAACGGCCCTCGGAGAGCGTATCAACATGCTTACATGGATGGGCGACTCCACGAAGATGAAAGCTCAGGAAAAACTCAATTCCTTCATCATCAAGATCGGTTATCCCGACAAGTGGAAAGACTATTCCAAGATGGAAATCAAGGGAGACAGCTATTATGCCGATATCAAACGCGCCAGCAAATGGATGCATGACGACAATATGGCTGACCTCGGCAAGACTGTAGATCGCGAGCGTTGGCTGATGAATCCTCAGGATGTCAATGCCTACTACAATCCGACCACAAACGAAATTTGTTTTCCTGCAGCCATCCTCCAACCGCCTTTCTTCAACATGGATGCAGACGATGCTGTCAATTATGGCGGTATCGGCGTAGTGATCGGACACGAGATGACGCATGGATTCGACGATCAAGGCCGCAACTTCGACAAAGACGGCAATATGATCAACTGGTGGACTGCTGAAGATGCTCAGAAGTTCGAGACCACAGCCCGAAAACTGGCCGATCAGTTCAGCGAGATCTACGTAGCCGATGGTGTTCGTGCCAATGGTAATATGACACTTGGCGAGAACATCGCAGATCAGGGCGGTCTCCTCATCTCTTATCTGGCTTTCCGCAATGCTGCCAAGGGTGAGGTAATGGAAGAAATCGACGGATTCACTCCCGACCAGCGTTTCTTTATCGGTTATGCCCGTCTATGGGGACAAAATATTCGTCCGGAAGAGGTTCTCCGTCTCACACAGATCGATGTGCACAGTTTGGGTGAGCTGCGCGTCAATCAAGCACTGCGCAATATCGAAGCTTTCTACGAAGCTTTCAATATACAGCCTACTGATAAGATGTATTTGGAACCCGAAAAGCGTGTAGTCGTTTGG","5.30","-12.75","78828","MNKTIKFLCLAPAVIGALMLTGCNGNKGQTNDTDRKREPVPAIDLSAMDTSVRPQDDFYRYCNGNWMKNNPLKPAYSRYGSFDILHDSTLERVHLIVDNLAAGQHEVGTNEYRIATLYRQAMDSIKRNKDGAAPLKEDLQKIEAIADRAAMVKYAAAKDNMGGSTFFGSYVYADAKNSEMNIFHITQTGLALDNRDYYLKQDAKSQQIREAYVAYLNKIAKLAGYDDEAATRIAKNAMKMETELAQICYSKEELRDTHRNYNKMAVKEFTNKYQGFDWTTYLADRQLTTLEEWDVEQLDFFKKFDSWFAKADLNEMRDYLLAGTISGAASYLSDDFEQARFDFFGKTLSGTTEMHPRWKRSVGMVSSFLGEALGEVYVKQYFPPEAKERMLKLVKNLQTALGERINMLTWMGDSTKMKAQEKLNSFIIKIGYPDKWKDYSKMEIKGDSYYADIKRASKWMHDDNMADLGKTVDRERWLMNPQDVNAYYNPTTNEICFPAAILQPPFFNMDADDAVNYGGIGVVIGHEMTHGFDDQGRNFDKDGNMINWWTAEDAQKFETTARKLADQFSEIYVADGVRANGNMTLGENIADQGGLLISYLAFRNAAKGEVMEEIDGFTPDQRFFIGYARLWGQNIRPEEVLRLTQIDVHSLGELRVNQALRNIEAFYEAFNIQPTDKMYLEPEKRVVVW","183254 181188","TIGR ID: PG0159","endothelin converting enzyme/neprilysin (PepO)","Cytoplasm, Outer membrane, Periplasm, Extracellular","PG0146 is equivalent to the previously sequenced dbj|BAA24495, a predicted PepO protein. Numerous hits in gapped BLAST to metallopeptidases, specifically endothelin converting enzyme/neprilysin. Residues 6-689 are 36% similar to the matallopeptidase from Xylella fastidiosa (gb|AAF83386).This sequence is similar to BT3811.","
InterPro
IPR000718
Family
Peptidase M13, neprilysin
PR00786\"[477-489]T\"[495-507]T\"[516-532]T\"[587-598]TNEPRILYSIN
PTHR11733\"[40-689]TPeptidase_M13
PF01431\"[485-686]TPeptidase_M13
InterPro
IPR006025
Binding_site
Peptidase M, neutral zinc metallopeptidases, zinc-binding site
PS00142\"[523-532]?ZINC_PROTEASE
InterPro
IPR008753
Domain
Peptidase M13
PF05649\"[53-433]TPeptidase_M13_N
noIPR
unintegrated
unintegrated
G3DSA:3.40.390.10\"[351-689]TG3DSA:3.40.390.10
PTHR11733:SF18\"[40-689]TPTHR11733:SF18
PS51257\"[1-23]TPROKAR_LIPOPROTEIN
SSF55486\"[30-689]TSSF55486


","No hit to the COGs database.","***** PR00786 (Neprilysin metalloprotease (M13) family signature) with a combined E-value of 1.3e-37. PR00786A 477-489 PR00786B 495-507 PR00786C 516-532 PR00786D 587-598","Residues 205-318 are 99% similar to a (PEPO) protein domain (PD217128) which is seen in O50642_PORGI.Residues 1-43 are identical to a (PEPO) protein domain (PD142967) which is seen in O50642_PORGI.Residues 44-204 are identical to a (ZINC METALLOPROTEASE PROTEIN HYDROLASE) protein domain (PD002031) which is seen in O50642_PORGI.Residues 633-689 are 98% similar to a (METALLOPROTEASE ZINC ENDOPEPTIDASE O) protein domain (PD011850) which is seen in O50642_PORGI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Feb 23 10:40:13 MST 2001","Fri Dec 26 13:49:57 2003","Fri Feb 23 10:40:13 MST 2001","Fri Feb 23 10:40:13 MST 2001","Fri Feb 23 10:40:13 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Feb 23 10:40:13 MST 2001","-49% similar to PDB:1DMT STRUCTURE OF HUMAN NEUTRAL ENDOPEPTIDASE COMPLEXED WITH PHOSPHORAMIDON (E_value = 3.4E_89);-49% similar to PDB:1R1H STRUCTURAL ANALYSIS OF NEPRILYSIN WITH VARIOUS SPECIFIC AND POTENT INHIBITORS (E_value = 3.4E_89);-49% similar to PDB:1R1I STRUCTURAL ANALYSIS OF NEPRILYSIN WITH VARIOUS SPECIFIC AND POTENT INHIBITORS (E_value = 3.4E_89);-49% similar to PDB:1R1J STRUCTURAL ANALYSIS OF NEPRILYSIN WITH VARIOUS SPECIFIC AND POTENT INHIBITORS (E_value = 3.4E_89);-49% similar to PDB:1Y8J Crystal Structure of human NEP complexed with an imidazo[4,5-c]pyridine inhibitor (E_value = 3.4E_89);","","","Residues 53 to 433 (E-value = 2.6e-190) place PG0146 in the Peptidase_M13_N family which is described as Peptidase family M13 (PF05649)Residues 485 to 686 (E-value = 1.1e-107) place PG0146 in the Peptidase_M13 family which is described as Peptidase family M13 (PF01431)","Fri Dec 26 13:49:57 2003","34540021","","Awano,S., Ansai,T., Mochizuki,H., Yu,W., Tanzawa,K., Turner,A.J.and Takehara,T.Sequencing, expression and biochemical characterization of thePorphyromonas gingivalis pepO gene encoding a protein homologous to human endothelin-converting enzymeFEBS Lett. 460 (1), 139-144 (1999)PubMed: 10571076","","Tue Apr 24 18:30:47 MDT 2001","","1","","","PG0159" "PG0147","184175","183276","900","ATGAAACCCACACTTTTTGTTTTGGCTGCGGGTATGGGCAGCCGCTATGGTAGTCTCAAGCAATTGGACGGCATAGGCCCCGGTGGCGATACGATCATGGACTATTCCGTCTATGATGCCATTCGTGCCGGATTCGGTCGGCTGGTCTTCGTAATCCGTCATTCATTCGAGAAAGAATTCCGAGAAAAAATTCTGACCAAGTACGAAGGCCGTATCCCTGTCGAACTGGTTTTTCAGGAATTGGATCGCTTGCCGGAAGGATTCTCCTGTCCGGAAGGGCGCGAGAAACCTTGGGGAACGAATCACGCCGTTCTGATGGGACGAGATGCGATTCGCGAACCTTTTGCCGTCATCAATGCGGATGATTTCTATGGACGCAATGGTTTTGAAGTTCTGGCTCGTAAGCTCATGACTTTGGAGGGTAAGCAAGGCGAATACTGCATGGTCGGCTACCGTGTGGGTAATACCCTGAGCGAAAGCGGTGGCGTTTCGCGTGGAGTATGCCAGGTAGATGAAAAACATTTGCTTACCGGTGTGGTGGAGCGTACCGGCATCGAGCGCACAGACGGTACTATCTCATTCCGAGATGAGACCGGAAAGATATGTACGCTGGCAGAGGATGCACCCGTTTCGATGAATATGTGGGGATTCACTCCTGACTACTTCGACTATTCGGAAGAACTGTTCATCAACTTCCTGAATGCTCATGGGCAGGAGCCGAAGAGCGAGTTCTTCATTCCCTTCGTTGTGAACGATCTTATTCGCAGCGGTCGAGCTTCGGTGGAAGTGCTGGATACGACAGCCCGATGGTTCGGTGTCACTTATTCGGACGATCGCCCCGGTGTCGTAGCCAAACTACGCGAACTAACGGAAGCCGGAGAATACCCAACGAAATTGTTT","4.90","-9.20","33614","MKPTLFVLAAGMGSRYGSLKQLDGIGPGGDTIMDYSVYDAIRAGFGRLVFVIRHSFEKEFREKILTKYEGRIPVELVFQELDRLPEGFSCPEGREKPWGTNHAVLMGRDAIREPFAVINADDFYGRNGFEVLARKLMTLEGKQGEYCMVGYRVGNTLSESGGVSRGVCQVDEKHLLTGVVERTGIERTDGTISFRDETGKICTLAEDAPVSMNMWGFTPDYFDYSEELFINFLNAHGQEPKSEFFIPFVVNDLIRSGRASVEVLDTTARWFGVTYSDDRPGVVAKLRELTEAGEYPTKLF","184175 183276","TIGR ID: PG0160","conserved hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04 other than a strong match to BT3808.","
noIPR
unintegrated
unintegrated
G3DSA:3.90.550.10\"[6-279]TG3DSA:3.90.550.10
SSF53448\"[1-287]TSSF53448


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Dec 26 13:46:02 2003","Fri Dec 26 13:46:02 2003","Fri Feb 23 10:59:42 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Feb 23 10:59:42 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Fri Feb 23 10:59:42 MST 2001","34540022","","","","","","1","","","PG0160" "PG0148","185176","184598","579","ATGAGCAGTTTCCACAAGCTGACTGATGATGAATTGGTCAGCCTTTATACAGAAGGATGCGATGAGGCTTTCGATGTCATACTGTCCCGGTATGATGCTGTAGTTCATACTTACATCCGTTTTTCCGTGAGCGATGCCGATTTGGCGGAGGATATTTTTCAGGACACTTTTATCAAGGTGATCCATACGCTTCGTCGCGGACAATACATCCCCACCGGCAAGTTCAAAGCTTGGCTGCTACGCCTTGCGCACAACCTCGTGATGGATCACTACCGCCGGGTCAGAGGGGAAGGAGCCAGATTGCAGTCTTTCGATGATGACGACGCCGCTCCTGTCGAAAAGGTGGCGGACAGCAATCTGACGGCGGAAGAACAACTGATCGAACTGGCTACTATCGAAGAGCTGGAACAGTACCTGAGCGTCCTGCCCGAAGTGCAGCAGGAAGTAGTGAGAATGCGCTACTGGGAGGACATGAGCTTCCGAGAGATTGCAGATGCTACCGGAGTAAGCATCAATACGGCACTCGGCCGAATGCGATATGCGCTGATCAATCTGCGCAAAATGATGGGCATGTCGGCT","4.70","-10.83","22191","MSSFHKLTDDELVSLYTEGCDEAFDVILSRYDAVVHTYIRFSVSDADLAEDIFQDTFIKVIHTLRRGQYIPTGKFKAWLLRLAHNLVMDHYRRVRGEGARLQSFDDDDAAPVEKVADSNLTAEEQLIELATIEELEQYLSVLPEVQQEVVRMRYWEDMSFREIADATGVSINTALGRMRYALINLRKMMGMSA","185176 184598","TIGR ID: PG0162","possible RNA polymerase sigma factor/ECF subfamily (sigma-70)","Cytoplasm","Several weak hits to sigma-70 factors in gapped BLAST, e.g. residues 8-189 are 29% similar to a probable sigma-70 factor in Pseudomonas aeruginosa (gb|AAG06284). Residues 23-189 are 30% similar to the SigG protein from Synechococcus (gb|AAD42769).","
InterPro
IPR007627
Domain
RNA polymerase sigma-70 region 2
PF04542\"[27-97]TSigma70_r2
InterPro
IPR013249
Domain
RNA polymerase sigma factor 70, region 4 type 2
PF08281\"[132-173]TSigma70_r4_2
InterPro
IPR013324
Domain
RNA polymerase sigma factor, regions 3 and 4
SSF88659\"[101-189]TSigma_r3_r4
InterPro
IPR013325
Domain
RNA polymerase sigma factor, region 2
SSF88946\"[1-114]TSigma_r2
InterPro
IPR014284
Domain
RNA polymerase sigma-70
TIGR02937\"[22-189]Tsigma70-ECF
noIPR
unintegrated
unintegrated
G3DSA:1.10.1740.10\"[11-99]TG3DSA:1.10.1740.10


","BeTs to 6 clades of COG1595COG name: Specialized sigma subunits of RNA polymeraseFunctional Class: KThe phylogenetic pattern of COG1595 is ------VCEBRH-----l---Number of proteins in this genome belonging to this COG is 6","***** IPB000838 (Sigma factor, ECF subfamily) with a combined E-value of 3.8e-14. IPB000838A 53-89 IPB000838B 139-185","Residues 32-186 are 28% similar to a (FACTOR SIGMA RNA POLYMERASE) protein domain (PD001205) which is seen in O87834_STRCO.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Feb 23 11:09:23 MST 2001","Fri Feb 23 11:06:07 MST 2001","Mon Apr 2 12:14:22 MDT 2001","Fri Feb 23 11:06:07 MST 2001","Fri Feb 23 11:06:07 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 6-189 are 27% similar to PG1449, a predicted sigma-70 factor. Residues 44-189 are 23% similar to PG1595 and PG1158, both predicted RNA polymerase sigma factors.","Mon Apr 2 12:19:06 MDT 2001","Fri Feb 23 11:06:07 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 27 to 97 (E-value = 5e-10) place PG0148 in the Sigma70_r2 family which is described as Sigma-70 region 2 (PF04542)Residues 138 to 187 (E-value = 4.8e-09) place PG0148 in the Sigma70_r4 family which is described as Sigma-70, region 4 (PF04545)","Mon Apr 2 12:14:22 MDT 2001","34540024","","","","","","1","","","PG0162" "PG0150","186975","185329","1647","ATGGCAAAGAGTGCACTACATCTGGCGCGGATGTCCTACCAGCCTAAAATGCCTGCATCTCTGCAGGGAGCAGTGAAGATAATAGAAGGAAAAGCTACGGAGGCGGTTTCGGACAAAGAAGAGATTGCTGCTATTTTTCCCCGCACATACGGCTTGCCGCTTATTTCTTTCGCACCTGGAGGAGAGCGGACGGAGTATCCTCCTACGAATGTGGGGGTTATCCTTTCGGGCGGACAGGCTCCGGGTGGACACAATGTGATAGCCGGTCTGTTCGATGAGATGAAGCTGCTCAACCCCGATAGCCGGCTCTTCGGATTTCTTATGGGACCGGATGGCCTGATCGAGCATAAGTATCGCGAACTGACTGCTGAGGTAATAGATGAATACCGCAATACGGGGGGCTTCGACATGATCGGATCCGGACGTACCAAGCTGGACAAGCCCGAACAGTTCGAAGCCGGACTGGAGATATTGCGAGAGTTGGACATCAAGGCATTGGTCATCATCGGTGGCGACGACTCCAACACCAACGCCTGCATCCTGGCCGAGTACTATGCCTCGATCGATGCCGGAATACAAGTGATCGGCTGTCCGAAGACGATCGACGGCGACTTGAAAAACAAACAGATAGAAACCTCCTTCGGCTTCGACACGGCCGCCAAAGTCTATAGCGAACTGATCGGTAATATCCAGCGCGATTGCAATTCGGCCCGGAAGTACTGGCACTTCATCAAGCTGATGGGGCGTTCGGCATCTCATATTACACTGGAGTGCGCCCTCCAGACCCACCCCAATATCTGTATCGTATCCGAAGAGGTGGAGGCCAACAATTACTATCTGGACGATGTGGTGACCTATATCGCCGAGACCGTGGTGCGTCGGTCGGAGGCAGGAATGAACTTCGGGACGGTACTGATTCCGGAGGGGTTGATCGAATTCCTGCCGGCCATGAAGAGGTTGATCAAGGAGCTGAACGAGTTTCTCTCCCAAAATGATGCCGAATTCAAGCTCATCAAACGTTCGGCACAGAGACAGTATATCAAGAACAAACTCAGTCCCGAGAATTCGCGCCTGTACGACAGCTTGCCGGTGGATGTGGCTCGACAGTTGATTGCCGATCGCGACCCTCACGGCAATGTGCAGGTTTCGCTCATTGCCACCGAGAAGCTCTTGGCAGACATGACGGCTCAGAAGCTGGCCGAATGGGCGGAAGAAGGACGATTTCAGGGGCGGTTCAGTACGCTTACCCACTTCTTCGGCTACGAAGGACGCTGTGCCATGCCCTCCAACTTCGATGCCAACTACTGCTACTGTCTCGGACGTGCAGCTTCTATCCTGATCGCAGCGGGAAAGACGGGCTACATGGCTGCGATCAAGAATACGGCAGATCCTGTATCCGAATGGGAAGCCGGCGGCGTGCCCATGACGATGATGATGAATATGGAGCGTCGGAGCGGAAAAATGAAGCCCGTGATTCGAAAAGCATTGGTGGATATGGATGGTGAACCGTACCGAGCATTGCGCGAGATGCGTCGCGAATGGGCGTTGAGCACCGAGTACGTTTACCCCGGCCCGATACAGTTCTTCGGCCCCGAACATGTATGCGATAGCCCCACGATGACACTCCGCTTGGAAAAGAACGATCGC","5.50","-9.20","61075","MAKSALHLARMSYQPKMPASLQGAVKIIEGKATEAVSDKEEIAAIFPRTYGLPLISFAPGGERTEYPPTNVGVILSGGQAPGGHNVIAGLFDEMKLLNPDSRLFGFLMGPDGLIEHKYRELTAEVIDEYRNTGGFDMIGSGRTKLDKPEQFEAGLEILRELDIKALVIIGGDDSNTNACILAEYYASIDAGIQVIGCPKTIDGDLKNKQIETSFGFDTAAKVYSELIGNIQRDCNSARKYWHFIKLMGRSASHITLECALQTHPNICIVSEEVEANNYYLDDVVTYIAETVVRRSEAGMNFGTVLIPEGLIEFLPAMKRLIKELNEFLSQNDAEFKLIKRSAQRQYIKNKLSPENSRLYDSLPVDVARQLIADRDPHGNVQVSLIATEKLLADMTAQKLAEWAEEGRFQGRFSTLTHFFGYEGRCAMPSNFDANYCYCLGRAASILIAAGKTGYMAAIKNTADPVSEWEAGGVPMTMMMNMERRSGKMKPVIRKALVDMDGEPYRALREMRREWALSTEYVYPGPIQFFGPEHVCDSPTMTLRLEKNDR","186975 185329 [Shorter 193 1629 99]","Probable beta subunit. Alpha subunit remains to be identified.TIGR ID: PG0163","phosphofructokinase; pyrophosphate-fructose 6-phosphate 1-phosphotransferase (probable beta subunit)","Cytoplasm","PG0150 is equivalent to the previously sequenced dbjBAB16715, a predicted phosphofructokinase. Residues 4-546 are 57% similar to the enzyme from Spirochaeta thermophila (gbAAG37271).This sequence is orthologous to CT205, CT207 and to BT0307.","
InterPro
IPR000023
Family
Phosphofructokinase
PD000707\"[192-254]TPpfruckinase
PR00476\"[73-92]T\"[162-178]T\"[195-212]T\"[236-252]T\"[298-310]TPHFRCTKINASE
PTHR13697\"[192-544]TPpfruckinase
PF00365\"[70-339]TPFK
InterPro
IPR011183
Family
Pyrophosphate-dependent phosphofructokinase PfpB
PIRSF005677\"[3-546]TPPi_PFK_PfpB
TIGR02477\"[6-546]TPFKA_PPi
noIPR
unintegrated
unintegrated
G3DSA:1.10.10.480\"[314-385]TG3DSA:1.10.10.480
G3DSA:3.40.50.450\"[1-293]T\"[425-494]TG3DSA:3.40.50.450
SSF53784\"[4-546]TSSF53784


","BeTs to 11 clades of COG0205COG name: 6-phosphofructokinaseFunctional Class: GThe phylogenetic pattern of COG0205 is ----YqVCebrh--gpOLIN-Number of proteins in this genome belonging to this COG is 1","***** IPB000023 (Phosphofructokinase) with a combined E-value of 3.6e-46. IPB000023A 78-94 IPB000023B 140-177 IPB000023C 221-274 IPB000023D 420-451","Residues 78-331 are 61% similar to a (TRANSFERASE 6-PHOSPHOFRUCTOKINASE KINASE) protein domain (PD000707) which is seen in O83553_TREPA.Residues 486-552 are 59% similar to a (1-PHOSPHOTRANSFERASE TRANSFERASE SUBUNIT 6-PHOSPHATE) protein domain (PD006557) which is seen in O83553_TREPA.Residues 349-485 are 51% similar to a (1-PHOSPHOTRANSFERASE SUBUNIT TRANSFERASE 6-PHOSPHATE) protein domain (PD007748) which is seen in O83553_TREPA.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Tue Dec 2 16:07:16 2003","Tue Apr 17 12:54:51 MDT 2001","Thu Jul 24 13:47:34 2008","Mon Mar 12 14:18:37 MST 2001","Fri Feb 23 11:29:09 MST 2001","Fri Feb 23 11:29:09 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Jul 24 13:47:34 2008","-68% similar to PDB:1KZH Structure of a pyrophosphate-dependent phosphofructokinase from the Lyme disease spirochete Borrelia burgdorferi (E_value = 1.3E_160);-68% similar to PDB:2F48 Crystal Structure of A Novel Fructose 1,6-Bisphosphate and AlF3 containing Pyrophosphate-dependent Phosphofructo-1-kinase Complex from Borrelia burgdorferi (E_value = 1.3E_160);-45% similar to PDB:1MTO X-ray Crystal structure of a Phosphofructokinase mutant from Bacillus stearothermophilus bound with frutose-6-phosphate (E_value = 4.2E_15);-46% similar to PDB:1PFK CRYSTAL STRUCTURE OF THE COMPLEX OF PHOSPHOFRUCTOKINASE FROM ESCHERICHIA COLI WITH ITS REACTION PRODUCTS (E_value = 9.4E_15);-46% similar to PDB:2PFK THE CRYSTAL STRUCTURE OF UNLIGANDED PHOSPHOFRUCTOKINASE FROM ESCHERICHIA COLI (E_value = 9.4E_15);","","","Residues 70 to 339 (E-value = 1.2e-08) place PG0150 in the PFK family which is described as Phosphofructokinase (PF00365)","Mon Mar 12 14:18:37 MST 2001","34540025","","Arimoto,T., Ansai,T. and Takehara,T. 2000. Cloning,expression and characterization of phosphofructokinase in Porphyromonas gingivalis. Published Only in DataBase.","","Mon Mar 12 14:18:37 MST 2001","","1","","","PG0163" "PG0151","187310","187903","594","GTGGCGTTCACCCTCACTCGCCCTTTGCCGTATACCGTCTTGACGTCAAATGGAATCTCTACGTATGCGGCATCCATATCGGGTACTTGCCTGATGATGGCATCGAATTCGATCGGACTGTCCGAACCGTTACCTACAGAAGAGGGAGCTTCAGTCTTCGGCAAAGTCTTCTTCATCCCAGTCGAACGAATCGAACGAGTACGGCAGATCGGGCATCTCTTCGCTAAACTGCTCCAGCTCTCGCCTGTCCTTTTTGGTCGGACGACCGGTGCCCTTGGCTCTGTCCACAAAGCCCGAAATGCGTTGCATTTCGAGTATCTCATACTCTTCGGGCGGAGTGATATTTTCCAGAAAGTCCTTCACCAGCTTGGCACCCATCCGATTCTGAGCCAAAGCCAGAATACGAAAGGAATAGGTCACCGGTGGCTTCCTTACCTGAATGACGTCGCCCACACGTACCATACGCGAAGGCTTGGCTTGCAGCCCGTTCACAGTTACTCGGCTTTTCTTGCAGGCATCCGTGGCTATCGTTCGTGTCTTGAAGATACGCGTAGCCCACATCCAACGGTCTATCCTTACCTCTTCCATCTCCTT","10.60","10.53","22059","VAFTLTRPLPYTVLTSNGISTYAASISGTCLMMASNSIGLSEPLPTEEGASVFGKVFFIPVERIERVRQIGHLFAKLLQLSPVLFGRTTGALGSVHKARNALHFEYLILFGRSDIFQKVLHQLGTHPILSQSQNTKGIGHRWLPYLNDVAHTYHTRRLGLQPVHSYSAFLAGIRGYRSCLEDTRSPHPTVYPYLFHLL","187310 187903 [Bad Olap 197 441 0]","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No hit found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","","","Fri Feb 23 11:35:41 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Feb 23 11:35:41 MST 2001","-40% similar to PDB:1GII HUMAN CYCLIN DEPENDENT KINASE 2 COMPLEXED WITH THE CDK4 INHIBITOR (E_value = );-40% similar to PDB:1GIJ HUMAN CYCLIN DEPENDENT KINASE 2 COMPLEXED WITH THE CDK4 INHIBITOR (E_value = );-56% similar to PDB:1UFL Crystal Structure of TT1020 from Thermus thermophilus HB8 (E_value = );-56% similar to PDB:1V3R Crystal structure of TT1020 from Thermus thermophilus HB8 (E_value = );-56% similar to PDB:1V3S Crystal structure of TT1020 from Thermus thermophilus HB8 (E_value = );","","","No significant hits to the Pfam 11.0 database","Fri Feb 23 11:35:41 MST 2001","","","","","","","1","","","" "PG0152","187897","187463","435","ATGGAAGAGGTAAGGATAGACCGTTGGATGTGGGCTACGCGTATCTTCAAGACACGAACGATAGCCACGGATGCCTGCAAGAAAAGCCGAGTAACTGTGAACGGGCTGCAAGCCAAGCCTTCGCGTATGGTACGTGTGGGCGACGTCATTCAGGTAAGGAAGCCACCGGTGACCTATTCCTTTCGTATTCTGGCTTTGGCTCAGAATCGGATGGGTGCCAAGCTGGTGAAGGACTTTCTGGAAAATATCACTCCGCCCGAAGAGTATGAGATACTCGAAATGCAACGCATTTCGGGCTTTGTGGACAGAGCCAAGGGCACCGGTCGTCCGACCAAAAAGGACAGGCGAGAGCTGGAGCAGTTTAGCGAAGAGATGCCCGATCTGCCGTACTCGTTCGATTCGTTCGACTGGGATGAAGAAGACTTTGCCGAAGAC","5.50","-1.04","16995","MEEVRIDRWMWATRIFKTRTIATDACKKSRVTVNGLQAKPSRMVRVGDVIQVRKPPVTYSFRILALAQNRMGAKLVKDFLENITPPEEYEILEMQRISGFVDRAKGTGRPTKKDRRELEQFSEEMPDLPYSFDSFDWDEEDFAED","187945 187463 [Shorter 196 441 99]","TIGR ID: PG0165","conserved hypothetical protein (possible heat shock protein)","Cytoplasm","Numerous weak hits in gapped BLAST to hypothetical proteins and heat shock protein 15 homologs. Residues 2-120 are 37% similar to a hypothetical protein from Streptomyces coelicolor (AL109732). Residues 2-120 are 35% similar to a probable heat shock protein from Pseudomonas aeruginosa (gb|AAG08580).","
InterPro
IPR002942
Domain
RNA-binding S4
PF01479\"[4-50]TS4
SM00363\"[4-68]TS4
PS50889\"[4-64]TS4
noIPR
unintegrated
unintegrated
G3DSA:3.10.290.10\"[2-95]TG3DSA:3.10.290.10
SSF55174\"[1-103]TSSF55174


","BeTs to 4 clades of COG1188COG name: Predicted small RNA-binding protein (S4 paralog)Functional Class: JThe phylogenetic pattern of COG1188 is ------v-eb-huj-------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 3-124 are 31% similar to a (REGION PROTEIN ORF3 UPSTREAM) protein domain (PD021159) which is seen in YRFH_HAEIN.Residues 4-69 are 34% similar to a (PROTEIN CONSERVED PUTATIVE MFD-DIVIC INTERGENIC REGION) protein domain (PD028612) which is seen in Q9ZIM1_LISMO.","","Tue Jun 12 18:05:23 MDT 2001","","Tue Jun 12 18:05:23 MDT 2001","Tue Jun 12 18:05:23 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Tue Jun 12 18:05:23 MDT 2001","Tue Jun 12 18:05:23 MDT 2001","","","Fri Feb 23 11:43:28 MST 2001","Tue Jun 12 18:13:14 MDT 2001","Tue Jun 12 18:05:23 MDT 2001","","Fri Feb 23 11:43:28 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Feb 23 11:43:28 MST 2001","-53% similar to PDB:1DM9 HEAT SHOCK PROTEIN 15 KD (E_value = 7.4E_11);-57% similar to PDB:1AOP SULFITE REDUCTASE STRUCTURE AT 1.6 ANGSTROM RESOLUTION (E_value = 7.4E_11);-57% similar to PDB:2AOP SULFITE REDUCTASE: REDUCED WITH CRII EDTA, SIROHEME FEII, [4FE-4S] +1, PHOSPHATE BOUND (E_value = 7.4E_11);-47% similar to PDB:2FRN Crystal structure of protein PH0793 from Pyrococcus horikoshii (E_value = 7.4E_11);-57% similar to PDB:2GEP SULFITE REDUCTASE HEMOPROTEIN, OXIDIZED, SIROHEME FEIII [4FE-4S] +2,SULFITE COMPLEX (E_value = 7.4E_11);","","","Residues 4 to 50 (E-value = 9.4e-08) place PG0152 in the S4 family which is described as S4 domain (PF01479)","Tue Jun 12 18:05:23 MDT 2001","34540027","","","","","","1","","","PG0165" "PG0153","188460","187906","555","ATGAAATACCTGATCGTCGGCCTTGGCAATATCGGCGGAGAGTACAACGGCACTCGCCATAATGTGGGTTTCCGGATGGTGAATGCTCTGGCCGAAGACGGTGGAGTGCAGTTCGTGGAAGCTCGTTACGGAGCGATAGCGCGTATGCGTGTGAAGAATGCGGAGCTGATCCTGCTGAAACCAAATACATATATGAATCTGAGTGGCAATGCCGTTCGCTACTGGATGCAACAGGAGAATATCCCTCGCGAACAGGTGCTTGTCCTTGTGGACGATTTGGCTTTGCCTTTCGGCACTTTGCGGCTGAAACCCAAGGGAAGCGATGCGGGGCATAACGGGCTGAAGAACATTGCCGAGGTGATGGGATCGATCGATTATGCCCGTCTGCGTTTCGGCTTGGGCGACGAGTTTTCCAAAGGAAGGCAGGTGGACTTCGTCCTCGGCCGTTTTACCCCCGAAGAAGAGGAGAAGCTGCCGGAGCTGACCAAGCATGCCGTGGAGATCATCAAGAGTTTTTGCCTGGCCGGTATCCAAAGGACGATGAACCGGTACAAC","9.70","3.67","20748","MKYLIVGLGNIGGEYNGTRHNVGFRMVNALAEDGGVQFVEARYGAIARMRVKNAELILLKPNTYMNLSGNAVRYWMQQENIPREQVLVLVDDLALPFGTLRLKPKGSDAGHNGLKNIAEVMGSIDYARLRFGLGDEFSKGRQVDFVLGRFTPEEEEKLPELTKHAVEIIKSFCLAGIQRTMNRYN","188460 187906","PTH appears to promote the hydrolysis of peptide chains from tRNAs, perhaps as peptidyl-tRNAs exit ribosomes. The natural substrate for peptidyl-tRNA hydrolase may be peptidyl-tRNAs that drop off the ribosome during translation. This protein is probably a cytoplasmically-located monomer.TIGR ID: PG0166","peptidyl-tRNA hydrolase (stage V sporulation protein C)","Cytoplasm","Numerous hits in gapped BLAST to peptidyl-tRNA hydrolases, e.g. residues 4-185 are 37% similar to the enzyme from B. halodurans (dbjBAB03787.1).This protein is similar to CT800, a predicted peptidyl-tRNA hydrolase from Chlamydia trachomatis.","
InterPro
IPR001328
Family
Peptidyl-tRNA hydrolase
PD005324\"[67-133]TPeptRNAhydrolase
G3DSA:3.40.50.1470\"[4-185]TPept_tRNA_hydro
PTHR17224\"[1-185]TPept_tRNA_hydro
PF01195\"[4-185]TPept_tRNA_hydro
TIGR00447\"[1-185]Tpth
PS01195\"[15-28]TPEPT_TRNA_HYDROL_1
PS01196\"[107-117]TPEPT_TRNA_HYDROL_2
SSF53178\"[1-185]TPept_tRNA_hydro


","BeTs to 13 clades of COG0193COG name: Peptidyl-tRNA hydrolaseFunctional Class: JThe phylogenetic pattern of COG0193 is ----yqvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB001328 (Peptidyl-tRNA hydrolase) with a combined E-value of 4.6e-48. IPB001328A 4-27 IPB001328B 58-69 IPB001328C 86-122 IPB001328D 126-134 IPB001328E 145-165","Residues 4-185 are 34% similar to a (HYDROLASE PEPTIDYL-TRNA PTH PROTEIN) protein domain (PD005324) which is seen in SP5C_BACSU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Tue Jul 17 14:41:44 2007","Fri Feb 23 11:51:31 MST 2001","Tue Jul 17 14:41:44 2007","Tue Jul 17 14:41:44 2007","Fri Feb 23 11:51:31 MST 2001","Fri Feb 23 11:51:31 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Thu Apr 6 17:27:24 MDT 2000","Tue Jul 17 14:41:44 2007","-51% similar to PDB:1RYM Structure of the Group II Intron Splicing Factor CRS2 (E_value = 6.6E_25);-52% similar to PDB:1RYN Structure of the Chloroplast Group II Intron Splicing Factor CRS2 (E_value = 8.6E_25);-52% similar to PDB:1RYB Crystal Structure of the Chloroplast Group II Intron Splicing Factor CRS2 (E_value = 1.5E_24);-55% similar to PDB:2PTH PEPTIDYL-TRNA HYDROLASE FROM ESCHERICHIA COLI (E_value = 4.4E_21);-45% similar to PDB:1D5N CRYSTAL STRUCTURE OF E. COLI MNSOD AT 100K (E_value = 4.4E_21);","","","Residues 4 to 185 (E-value = 3.8e-61) place PG0153 in the Pept_tRNA_hydro family which is described as Peptidyl-tRNA hydrolase (PF01195)","Fri Feb 23 11:51:31 MST 2001","34540028","","","De La Vega FM, Galindo JM, Old IG, Guarneros G. 1996. Microbial genes homologous to the peptidyl-tRNA hydrolase-encoding gene of Escherichia coli. Gene 169(1):97-100. PubMed: 8635758. ","","Tue Jul 17 14:41:44 2007","1","","","PG0166" "PG0154","189180","188605","576","ATGAAAACATTTCAACTGACCGGTACTCCTCGTGCCGAATTCGGAAAGAAGGCTGCCAAAGCCATTCGCAAAGAAGATCAGATCCCTGCCGTTCTCTATGGCGGAAAAGGGGAAGGCGTAAACTTTATCGTATCGCAGGATGCCGTACGCAATCTGATCTACTCACCTGAGATCTTCCTCGTGGAGCTGACCGTAGAAGGCAGTGGCTCATACAAGGCTATCCTGAAGGAAATACAATTCCATCCGGTGACAGACCGCATCATCCACATCGACTTCCTGCAGGTAACGGACGAAAAGCCCGTGGTAATGGAAGTGCCTGTAGTTCTCACCGGACACGCAGAAGGCGTGAAGGCTGGGGGTAAGTTGAGCTTGGAAATGCGTAAGCTCAAGGTGAAAGCTCTCTACAGCGAGATCCCCGAGAAGCTGGATATCGACGTTTCCGACTTGCAGCTCGGCAAGACGATACAGGTGGGCGAACTTCACTTCGAAGGTCTGACCCTGATGAATGCAAAGAACGCCGTGGTATGTGCTGTGAAGCTGACTCGTGCAGCTCGTGGTGCAGCCGTGAAGAAACAG","9.80","4.92","20982","MKTFQLTGTPRAEFGKKAAKAIRKEDQIPAVLYGGKGEGVNFIVSQDAVRNLIYSPEIFLVELTVEGSGSYKAILKEIQFHPVTDRIIHIDFLQVTDEKPVVMEVPVVLTGHAEGVKAGGKLSLEMRKLKVKALYSEIPEKLDIDVSDLQLGKTIQVGELHFEGLTLMNAKNAVVCAVKLTRAARGAAVKKQ","189207 188605","In B.subtilis, the Ctc protein is expressed as enzymes of the TCA cycle are repressed (at the end of the exponential growth phase). It is also induced by heat shock, salt stress as well as glucose and oxygen deprivation. In Bacillus subtilis, the ctc gene is controlled by sigma-B, known to be induced by environmental challenges known to elicit a general stress response, i.e., heat shock (see Boylan et. al., 1993).TIGR ID: PG0167","50S ribosomal protein L25/general stress protein","Cytoplasm","Several hits in gapped BLAST to 50S ribosomal protein L25 sequences, e.g. residues 5-178 are 29% similar to the protein from Rickettsia prowazekii (AJ235272), 6-157 are 34% similar to the protein from Bacillus halodurans.This protein is similar to CT799, a predicted general stress protein from Chlamydia trachomatis.","
InterPro
IPR001021
Family
Ribosomal protein L25
PD012503\"[11-95]TRibosomal_L25
PF01386\"[6-92]TRibosomal_L25p
TIGR00731\"[6-180]Tctc_TL5
InterPro
IPR011035
Domain
Ribosomal protein L25-like
SSF50715\"[2-189]TRibosomal_L25rel
noIPR
unintegrated
unintegrated
G3DSA:2.170.120.20\"[97-189]TG3DSA:2.170.120.20
G3DSA:2.40.240.10\"[3-95]TG3DSA:2.40.240.10


","BeTs to 11 clades of COG1825COG name: Ribosomal protein L25 (general stress protein Ctc)Functional Class: JThe phylogenetic pattern of COG1825 is -----qvcebrhuj--olinxNumber of proteins in this genome belonging to this COG is 1","***** PF01386 (Ribosomal L25p family) with a combined E-value of 5.3e-09. PF01386A 10-21 PF01386B 61-92","Residues 5-93 are 31% similar to a (PROTEIN RIBOSOMAL L25 GENERAL) protein domain (PD012503) which is seen in RL25_RICPR.","","Tue Jun 12 18:10:59 MDT 2001","","Tue Jun 12 18:10:59 MDT 2001","Tue Jun 12 18:10:59 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Tue Jun 12 18:10:59 MDT 2001","Tue Jun 12 18:10:59 MDT 2001","","Tue Jul 17 14:42:53 2007","Fri Feb 23 11:57:37 MST 2001","Tue Jun 12 18:16:53 MDT 2001","Tue Apr 24 18:57:55 MDT 2001","Tue Jul 17 14:42:53 2007","Tue Jul 17 14:42:53 2007","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Thu Apr 6 16:52:31 MDT 2000","Tue Jul 17 14:42:53 2007","-48% similar to PDB:1NKW Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans (E_value = 1.6E_13);-48% similar to PDB:1SM1 COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN (E_value = 1.6E_13);-48% similar to PDB:1YL3 Crystal structure of 70S ribosome with thrS operator and tRNAs. Large subunit. The coordinates for the small subunit are in the pdb entry 1YL4. (E_value = 1.6E_13);-48% similar to PDB:2B66 50S ribosomal subunit from a crystal structure of release factor RF1, tRNAs and mRNA bound to the ribosome. This file contains the 50S subunit from a crystal structure of release factor RF1, tRNAs and mRNA bound to the ribosome and is described in remark 400 (E_value = 1.6E_13);-48% similar to PDB:2B9N 50S ribosomal subunit from a crystal structure of release factor RF2, tRNAs and mRNA bound to the ribosome. This file contains the 50S subunit from a crystal structure of release factor RF1, tRNAs and mRNA bound to the ribosome and is described in remark 400. (E_value = 1.6E_13);","","","Residues 6 to 92 (E-value = 8.3e-15) place PG0154 in the Ribosomal_L25p family which is described as Ribosomal L25p family (PF01386)","Tue Apr 24 18:57:55 MDT 2001","34540029","","","Volker U, Engelmann S, Maul B, Riethdorf S, Volker A, Schmid R, Mach H, Hecker M. 1994. Analysis of the induction of general stress proteins of Bacillus subtilis. Microbiology 140(Pt 4): 741-52. PubMed: 8012595.Boylan SA, Redfield AR, Brody MS, Price CW. 1993. Stress-induced activation of the sigma B transcription factor of Bacillus subtilis. Journal of Bacteriology 175(24): 7931-7937. PubMed: 8253681.","","Tue Jul 17 14:42:53 2007","1","","","PG0167" "PG0155","189608","189351","258","TTGCTGCTTTTTTCCTCCGATTCGGACTTATTTTCTTTTGATCCGCCCTCGCCCTCTTCGAGTTTTTACGTTCCAAAAAATTGTTTCAGACGGAACGAAAAAACGTGGCGCGAGAATTTTTCACTTCCCGCGCCGGAAGAAAAAAGTTCTCAAACCAAAACGAAAAATTTATGGTTCCATTTTTCCGGAAAACACGAACGGCAATTCGTCCGTTTTACGCTCGAAAAAATCATTTGCTCTTTCTCGGCAAATAAACTT","9.90","4.37","10124","LLLFSSDSDLFSFDPPSPSSSFYVPKNCFRRNEKTWRENFSLPAPEEKSSQTKTKNLWFHFSGKHERQFVRFTLEKIICSFSANKL","189608 189351","NO TIGR ID corresponds to this gene.","hypothetical protein","Periplasm, Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Feb 23 11:58:59 MST 2001","","Fri Feb 23 11:58:59 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Feb 23 11:58:59 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Fri Feb 23 11:58:59 MST 2001","","","","","","","1","","","" "PG0156","189792","191831","2040","ATGGATAGACAATTCAAGCGAACTCTTATTACTACGGCCCTCCCGTATGCCAACGGGCCTGTACATATCGGACACTTGGCCGGTGTCTACGTTCCGGCCGATATATATGCACGCTATCTGCGATTGCGTGGCAGAGACTGCCTGCTGATCGGCGGTTCGGACGAACACGGTGTACCCATCGCCCTGAAAGCCAAAGCCGAGGGATGCACTCCGCAGGAGGTGGTAGACCGATACCACGAACTGATCAAGCGTTCGTTCGAGGGGCTGGGTATCTCTTTCGACATATACTCACGTACCACAAGCGACATACATCGTCGTACGGCAAGTGAGTTTTTCAAGACCCTGTATGAAAAGGGTGAGTTCGTGGAGCAGACGAGTGAGCAGTATTATGACGAAGAAGCCAAGCAATTCCTGGCCGATCGTTATATCATCGGTACCTGTCCGCACTGTAGCAATGATCGGGCTTACGGCGACCAGTGCGAAGCCTGCGGCACCTCACTCAATGCTACCGATCTGATCGATCCGCGGAGTACGATCTCGGGTAGTGCTCCCGTGCTGCGCGAGACGAAACACTGGTATCTACCTCTGGACAAGCATGAGCCTTTCCTGAAAGAGTGGATCCTTGATGGACATAAGGAGTGGAAGAGCAACGTCTACGGCCAGTGCAAGAGTTGGCTGGATATGGGGCTGCAACCCCGTGCCGTGAGCCGCGATTTGGACTGGGGTATCCCCGTGCCGGTGGAGGGTGCCGAAGGAAAAGTATTGTATGTCTGGTTCGATGCTCCGATAGGCTATATCTCCAATACCAAAGAGCTGTGTCCCGATAGTTGGGAGACGTGGTGGAAGTCGGAAGATACCCGTCTTGTTCATTTTATCGGTAAGGATAATATCGTATTCCACTGTATCGTTTTCCCGGCCATGCTCCGTGCCGAAGGTTCGTTTATCCTGCCTGACAATGTGCCTGCCAACGAGTTTCTCAACCTCGAAGGAGATAAGATTTCCACCAGTCGGAACTGGGCCGTCTGGCTGCATGAATACCTCGAAGAGTTCCCGGGCAAGCAGGATGTACTGCGCTATGTGCTCACGGCCAACGCTCCTGAGACGAAGGACAACGACTTCACGTGGCGCGACTTTCAGGCTCGCAACAACAATGAACTGGTAGCCATATTCGGCAATTTCGTGAACCGGGCATTGGTCCTTACTCATAAATACTTCGATGGAGCTGTCCCGCCCAAAGGCGAGCTGACGGATTGCGACAGCCGCACGATAGAGGAGTTTGCAGCCGTGAAGCAGGCCTTGGAGCATCAGTTGGATACGTTCCACTTCCGCGAAGCACTGAAAGAAGCGATGAATCTGGCACGTATAGGCAATAAATATCTGGCCGATACGGAACCTTGGAAGCTGGCAAAAACGGATATGAACCGTGTGGCTACGATCCTCAATCTGTCTCTGCAGATAACGGCCAATCTGGCTATCGCCTTCGAACCGTTCCTGCCTTTCTCCTCGGCAAAACTCATGTCGATGCTCTCCACCGACTGTCCTTTCGGCTGGGATCGTTTGGGTAGTACGGATCTCTTACCCGAAGGACACGTCTTGGGCAATCCCGAATTGCTCTTCGAAAAGCTGGAGGACAGTGTGATAGATGCACAGATTCAGAAATTGCAGGATACCAAGCTGGCCAACGAAAAGGCTGCCCATCAGGCTGCTCCGATAGCCGAAGACATTGCATTCGAGGACTTTCTCAAGCTGGACATCCGTGTGGGCACCGTGCTGGAGTGTGAGAAAGTGCCCAAAGCGGACAAGCTCTTGCGTTTTCGTATCGATGATGGTCTGAGTGGCCGGACGATCGTTTCGGGTATTGCCAAACACTATGCTCCGGAAGAGCTGGTAGGCAAGCAGGTATGCTTTATCGCCAATTTGCCGCCGCGCAAGCTGAAAGGTATCGAGTCCGAGGGCATGATTCTTTCGGCAGAGGATGCGGATGGTTCGCTCAGGGTCATTATGCCGGCGGCTGAAGTTGCTGCAGGTAGTCAGGTGAAA","5.20","-21.20","76605","MDRQFKRTLITTALPYANGPVHIGHLAGVYVPADIYARYLRLRGRDCLLIGGSDEHGVPIALKAKAEGCTPQEVVDRYHELIKRSFEGLGISFDIYSRTTSDIHRRTASEFFKTLYEKGEFVEQTSEQYYDEEAKQFLADRYIIGTCPHCSNDRAYGDQCEACGTSLNATDLIDPRSTISGSAPVLRETKHWYLPLDKHEPFLKEWILDGHKEWKSNVYGQCKSWLDMGLQPRAVSRDLDWGIPVPVEGAEGKVLYVWFDAPIGYISNTKELCPDSWETWWKSEDTRLVHFIGKDNIVFHCIVFPAMLRAEGSFILPDNVPANEFLNLEGDKISTSRNWAVWLHEYLEEFPGKQDVLRYVLTANAPETKDNDFTWRDFQARNNNELVAIFGNFVNRALVLTHKYFDGAVPPKGELTDCDSRTIEEFAAVKQALEHQLDTFHFREALKEAMNLARIGNKYLADTEPWKLAKTDMNRVATILNLSLQITANLAIAFEPFLPFSSAKLMSMLSTDCPFGWDRLGSTDLLPEGHVLGNPELLFEKLEDSVIDAQIQKLQDTKLANEKAAHQAAPIAEDIAFEDFLKLDIRVGTVLECEKVPKADKLLRFRIDDGLSGRTIVSGIAKHYAPEELVGKQVCFIANLPPRKLKGIESEGMILSAEDADGSLRVIMPAAEVAAGSQVK","189792 191831","TIGR ID: PG0170","methionyl-tRNA synthetase","Cytoplasm","Numerous hits in gapped BLAST to met-tRNA synthetase sequences, e.g. residues 7-680 are 43% similar to the enzyme from Pyrococcus horikoshii (AP000004) and 40% similar to the enzyme from Methanococcus jannaschii (gb|AAB99269.).This sequence is similar to BT2933.","
InterPro
IPR001412
Family
Aminoacyl-tRNA synthetase, class I
PS00178\"[15-26]TAA_TRNA_LIGASE_I
InterPro
IPR002304
Domain
Methionyl-tRNA synthetase, class Ia
TIGR00398\"[8-543]TmetG
InterPro
IPR002547
Domain
t-RNA-binding region
PF01588\"[585-678]TtRNA_bind
PS50886\"[579-680]TTRBD
InterPro
IPR004495
Domain
Methionyl-tRNA synthetase, beta subunit, C-terminal
TIGR00399\"[548-680]TmetG_C_term
InterPro
IPR008224
Family
Methionyl-tRNA synthetase, dimer-forming
PIRSF001528\"[6-680]TMetRS_dimerising
InterPro
IPR009080
Domain
Aminoacyl-tRNA synthetase, class 1a, anticodon-binding
SSF47323\"[387-593]TtRNAsyn_1a_bind
InterPro
IPR012340
Domain
Nucleic acid-binding, OB-fold
G3DSA:2.40.50.140\"[578-679]TOB_NA_bd_sub
InterPro
IPR014729
Domain
Rossmann-like alpha/beta/alpha sandwich fold
G3DSA:3.40.50.620\"[6-389]TRossmann-like_a/b/a_fold
InterPro
IPR014758
Domain
Methionyl-tRNA synthetase, class Ia, N-terminal
PR01041\"[10-23]T\"[43-57]T\"[91-102]T\"[255-266]T\"[290-305]T\"[385-396]TTRNASYNTHMET
InterPro
IPR015413
Domain
tRNA synthetase class I (M)
PF09334\"[8-398]TtRNA-synt_1g
noIPR
unintegrated
unintegrated
G3DSA:1.10.730.10\"[390-512]TG3DSA:1.10.730.10
PTHR11946\"[12-567]TPTHR11946
PTHR11946:SF1\"[12-567]TPTHR11946:SF1
SSF50249\"[575-679]TNucleic_acid_OB
SSF52374\"[5-386]TSSF52374
SSF57770\"[143-177]TSSF57770


","BeTs to 17 clades of COG0143COG name: Methionyl-tRNA synthetaseFunctional Class:� JThe phylogenetic pattern of COG0143 is amtkYqvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** PR01041 (Methionyl-tRNA synthetase signature) with a combined E-value of 4.9e-44. PR01041A 10-23 PR01041B 43-57 PR01041C 91-102 PR01041D 255-266 PR01041E 290-305 PR01041F 385-396***** PF01588 (Putative tRNA binding domain) with a combined E-value of 1.1e-13. PF01588A 599-610 PF01588B 639-656***** DM01195 (METHIONINE--TRNA LIGASE) with a combined E-value of 7.9e-09. DM01195A 621-629 DM01195B 639-656","Residues 319-398 are 40% similar to a (SYNTHETASE METHIONYL-TRNA AMINOACYL-TRNA LIGASE) protein domain (PD187472) which is seen in O13634_SCHPO.Residues 86-148 are 41% similar to a (METHIONYL-TRNA SYNTHETASE) protein domain (PD006341) which is seen in SYM_ARCFU.Residues 324-470 are 49% similar to a (SYNTHETASE AMINOACYL-TRNA PROTEIN LIGASE BIOSYNTHESIS) protein domain (PD000476) which is seen in SYM_METTH.Residues 91-305 are 50% similar to a (SYNTHETASE AMINOACYL-TRNA LIGASE PROTEIN BIOSYNTHESIS) protein domain (PD000647) which is seen in SYM_BORBU.Residues 6-378 are 29% similar to a (PUTATIVE TRNA SYNTHETASE AMINOACYL-TRNA) protein domain (PD217233) which is seen in Q9ZBH7_STRCO.Residues 9-83 are 61% similar to a (SYNTHETASE AMINOACYL-TRNA LIGASE PROTEIN BIOSYNTHESIS) protein domain (PD000389) which is seen in O58721_PYRHO.Residues 403-553 are 31% similar to a (SYNTHETASE METHIONYL-TRNA AMINOACYL-TRNA LIGASE) protein domain (PD013784) which is seen in SYM_HUMAN.Residues 578-679 are 52% similar to a (SYNTHETASE AMINOACYL-TRNA PROTEIN LIGASE BIOSYNTHESIS) protein domain (PD002123) which is seen in SYM_THEMA.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Mar 21 16:45:10 MST 2000","Fri Dec 19 10:34:09 2003","Fri Dec 19 10:34:09 2003","Fri Feb 23 12:06:57 MST 2001","Fri Feb 23 12:06:57 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG0156 is weakly similar to PG0717, a predicted leucyl-tRNA synthetase. Residues 2-94 are 30% similar to PG0717.","Fri Feb 23 12:06:57 MST 2001","Fri Feb 23 12:06:57 MST 2001","-61% similar to PDB:1RQG Methionyl-tRNA synthetase from Pyrococcus abyssi (E_value = 5.3E_172);-52% similar to PDB:1F4L CRYSTAL STRUCTURE OF THE E.COLI METHIONYL-TRNA SYNTHETASE COMPLEXED WITH METHIONINE (E_value = 1.0E_82);-53% similar to PDB:1P7P Methionyl-tRNA synthetase from Escherichia coli complexed with methionine phosphonate (E_value = 1.3E_82);-53% similar to PDB:1PFU METHIONYL-TRNA SYNTHETASE FROM ESCHERICHIA COLI COMPLEXED WITH METHIONINE PHOSPHINATE (E_value = 1.3E_82);-53% similar to PDB:1PFV METHIONYL-TRNA SYNTHETASE FROM ESCHERICHIA COLI COMPLEXED WITH DIFLUOROMETHIONINE (E_value = 1.3E_82);","","","Residues 2 to 374 (E-value = 7.5e-08) place PG0156 in the tRNA-synt_1 family which is described as tRNA synthetases class I (I, L, M and V) (PF00133)Residues 585 to 678 (E-value = 5.9e-44) place PG0156 in the tRNA_bind family which is described as Putative tRNA binding domain (PF01588)","Fri Dec 19 10:34:09 2003","34540030","","","","","","1","","","PG0170" "PG0157","191864","193633","1770","ATGAAGAAGAGACTTTTCGGTTTGCTGTCCGTCCTGCTTCCGCTGGCGACGTTTCTCCTCGGTGGATGTGCAAGCAGGCAGGAGCATTCGCTTCGTATTATCCACACTACGGATCTTCACGGGAATGTATTCCCCACTGATTTCAAAGCTTTAAGACCGACTTCGGGTGGAATGTCGCGCTTGGCTTCCTTTCTGAAAGCTGCCCGGTCGGACAGATCGGAGTTGCTGCTCTTCGATGGTGGCGACGTATTGCAGGGCGATCCTACGGCCTACTATTATAACTACATGGACACGACGGGTACTCATCTCTTCTCCCGTGCGATGAACTACTTGCGCTATGACGCCGCCATACCGGGCAATCACGACATCGAGACCGGCCATGCCGTCTATGACAAATGGGTAGCCGGCTGCGACTTCCCTTTCTTGGCGGCGAACGCTATCGACACCGAGACCGGCAAGCCATATTGGGCTCCTTATAAGGTCTTCGATCGGAACGGGCTGAGGGTGGCTCTGTTGGGCTTTATAACTCCAGCTATTCCTGAGTGGCTGCCGCAAAGTCTGTGGACGGGAATGCGATTCGACGATATAATCGAATCGGCCAAGTACTGGGTACCGTTTGTGATCCAAAAGGAAAAACCTGATTTTGTTGTATGCGTACTGCATTCCGGCAGGGAGAATGACAATTCGAACTATCTCGAAGATGCCGGTATGACTCTCGCTCGTGAAGTGGCAGGCATAGATGTACTATTGCTGGGACATGATCATCAGGAGTACAGCCGGAGGGTGAAAGGAGCAGAAGCCGACTCCGTTCTCGTACTGAATCCGGCCAATCATTTGGACAAAGTGTCCGATGTGCGACTCAGTCTCGCTCGCAAAGGAGACAAGGTACTGCATAAAAGAGTGGAAGGTGGCTTGACGGACATATCGCGGCTTACTCCCGATTCAGCCTTTATGGCGCATTTCTCCTCCGATGAAGCTGCCGTTCGCCGGTTTGTGAACGAGCCTATGTGTGTTTCTTCCACCGAAATAAGTTCTGCAGACGCTCTGTTCGGCCCGTCTCCTTTCATGGATCTGATTCATCATGTGATGCTGAGCGAGTCCGGCGCGGATATATCATTTGCAGCTCCTCTCTCCATCAATACGGATTTGCCGGCGGATTCGATCTATATGTACCACATGTTCGCCATCTATCCGTACGAGAATTTTCTTTGCACGATGCAAATGACAGGCCGCGAAATATGTGACTATTTGGAGTTTTCCTATTCCCGATGGGTGGCGGATCCGACTCGGCAGAATGGTCATCTCATCCTGCTGAAAAAGGATGTCGTTGCTTCCGACCGTTTCAAAACGATGTATCCTTCCTTTAATTACAGTGCGGCGGGAGGACTGCGCTATACCGTAGACGTGACCAAACCGATAGGGGAGAGGGTGCTCATCACGGGAGTGAGGGACAAGATGTCCGGCCAAGGGGTATACAAGCCCTTTGTACTTGATAGTGTATACACGGTGGCCCTCAATTCTTATCGAGCCAATGGTGGGGGCGGACTGATGACGGAAGGAGCCGGTATTGCACCCGAAGAATTGCATTCTCGTCTCAAGAACTCTACAGCCGTGGATATTCGGCAAGCTCTGATTCGCTATGTGCGCCGCACGGGTAGGGTAGAAGTGCCTTCTGTCTGCGATTGGCAATTTGTGCCGACCGGATCGGTCAAGGAAGCCATCGCACGCGACCGAAAGTTTCTCTTCGATAAGAGAAAAAAGATTACTCGA","7.20","1.80","65924","MKKRLFGLLSVLLPLATFLLGGCASRQEHSLRIIHTTDLHGNVFPTDFKALRPTSGGMSRLASFLKAARSDRSELLLFDGGDVLQGDPTAYYYNYMDTTGTHLFSRAMNYLRYDAAIPGNHDIETGHAVYDKWVAGCDFPFLAANAIDTETGKPYWAPYKVFDRNGLRVALLGFITPAIPEWLPQSLWTGMRFDDIIESAKYWVPFVIQKEKPDFVVCVLHSGRENDNSNYLEDAGMTLAREVAGIDVLLLGHDHQEYSRRVKGAEADSVLVLNPANHLDKVSDVRLSLARKGDKVLHKRVEGGLTDISRLTPDSAFMAHFSSDEAAVRRFVNEPMCVSSTEISSADALFGPSPFMDLIHHVMLSESGADISFAAPLSINTDLPADSIYMYHMFAIYPYENFLCTMQMTGREICDYLEFSYSRWVADPTRQNGHLILLKKDVVASDRFKTMYPSFNYSAAGGLRYTVDVTKPIGERVLITGVRDKMSGQGVYKPFVLDSVYTVALNSYRANGGGGLMTEGAGIAPEELHSRLKNSTAVDIRQALIRYVRRTGRVEVPSVCDWQFVPTGSVKEAIARDRKFLFDKRKKITR","191855 193633","TIGR ID: PG0171","probable 2',3'-cyclic-nucleotide 2'-phosphodiesterase","Periplasm, Cytoplasm, Outer membrane","Several hits in gapped BLAST to 2',3'-cyclic-nucleotide 2'-phosphodiesterase sequences. Residues 27-514 are 28% similar to the enzyme from Streptomyces coelicolor (AL109732). Residues 8-566 are 25% similar to the enzyme from B.subtilis (Z99108).This sequence is similar to BT1236.","
InterPro
IPR004843
Domain
Metallophosphoesterase
PF00149\"[31-257]TMetallophos
InterPro
IPR006146
Domain
5'-Nucleotidase, N-terminal
PS00785\"[31-43]?5_NUCLEOTIDASE_1
InterPro
IPR006179
Family
5'-Nucleotidase and apyrase
PR01607\"[29-47]T\"[211-228]T\"[239-262]T\"[387-410]T\"[494-513]TAPYRASEFAMLY
PTHR11575\"[8-424]T\"[449-590]T5_nucleotidase
InterPro
IPR008334
Domain
5'-Nucleotidase, C-terminal
G3DSA:3.90.780.10\"[350-568]T5'-Nucleotdase_C
PF02872\"[335-521]T5_nucleotid_C
SSF55816\"[335-568]T5'-Nucleotdase_C
noIPR
unintegrated
unintegrated
G3DSA:3.60.21.10\"[27-334]TG3DSA:3.60.21.10
PTHR11575:SF6\"[8-424]T\"[449-590]TPTHR11575:SF6
PS51257\"[1-23]TPROKAR_LIPOPROTEIN
SSF56300\"[27-334]TSSF56300


","BeTs to 9 clades of COG0737COG name: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterasesFunctional Class: FThe phylogenetic pattern of COG0737 is a-t-yqvCEB-Huj---l---Number of proteins in this genome belonging to this COG is 1","***** IPB002224 (5'-Nucleotidase) with a combined E-value of 1.1e-11. IPB002224A 31-41 IPB002224B 111-125 IPB002224C 137-146 IPB002224D 200-227***** BP01739 (PROTEIN EXONUCLEASE DNA REPAIR) with a combined E-value of 3.4e-06. BP01739A 32-42 BP01739C 117-125 BP01739D 246-256","Residues 31-544 are 26% similar to a (PRECURSOR HYDROLASE SIGNAL 5'-NUCLEOTIDASE PROTEIN) protein domain (PD002576) which is seen in O34313_BACSU.","","Tue Jun 12 18:13:56 MDT 2001","","Tue Jun 12 18:13:56 MDT 2001","Tue Jun 12 18:13:56 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Tue Jun 12 18:13:56 MDT 2001","Tue Jun 12 18:13:56 MDT 2001","","","Fri Jul 25 12:42:53 2008","Fri Jul 25 12:42:53 2008","Fri Jul 25 12:42:53 2008","Fri Jul 25 12:42:53 2008","Fri Jul 25 12:42:53 2008","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Jul 25 12:42:53 2008","-38% similar to PDB:1HO5 5'-NUCLEOTIDASE (E. COLI) IN COMPLEX WITH ADENOSINE AND PHOSPHATE (E_value = 1.7E_17);-39% similar to PDB:1HP1 5'-NUCLEOTIDASE (OPEN FORM) COMPLEX WITH ATP (E_value = 1.7E_17);-38% similar to PDB:1HPU 5'-NUCLEOTIDASE (CLOSED FORM), COMPLEX WITH AMPCP (E_value = 1.7E_17);-38% similar to PDB:1USH 5'-NUCLEOTIDASE FROM E. COLI (E_value = 1.7E_17);-38% similar to PDB:2USH 5'-NUCLEOTIDASE FROM E. COLI (E_value = 1.7E_17);","","","Residues 31 to 257 (E-value = 1.2e-14) place PG0157 in the Metallophos family which is described as Calcineurin-like phosphoesterase (PF00149)Residues 335 to 521 (E-value = 4.9e-16) place PG0157 in the 5_nucleotid_C family which is described as 5'-nucleotidase, C-terminal domain (PF02872)","Fri Jul 25 12:42:53 2008","34540031","","","","","","1","","","PG0171" "PG0158","193633","194412","780","ATGACGCTGTGGATGGCTGTGGCCCTGCTTGTGCTGATTGCAGGCATGGCTTTTATGACGTTATGGAAACCGAAAGATCCATGGCAGGCCGACAACCTGCCGCCAGAAGGCTCTTCGGATCAATTCCGTCGCAAGGGGATTATCGATGCCGATGCCTCGTCTTTGTTGGTGCCTGTGCCTGCCGCTGTGGATAGCCTGCCTTGTTTTCTCGTTATCGATACGGAGACGACCGGATTGCCTGCCGATGAAACGCAGTTTATTTCCGGAGTAGATGCACCGGCACCCGTATCGGTTGGTTGGCAGCTGCTGGACTTTCGTTTCAGATGTATAGAGGAAGTCGTTTGCCGGCTGTCTACCGACGAACCGGTATCACCCGAGGCTGCAGCTTTGCACGGCATCACGGATGCTTCGCTACACGGCGATGATCCGCATGAGGTTTACGCACGTTTGCTTGGGGCTGTATCGAAAGCAAAAGTACTGTCTGCCCACAATCTGGCCTTTCACCGTTCCGTTCTGGTCTATGATATGAGACGGAGGGGATTCGATCCGTCTCCCTTGTTCTCCCTTGATGATTATTGTACAATGGAGGCGGGAGTCGATTTTACTCATCTGTACGGAAGCTGTGGAACATGGAAGCTGCCACGTCTGACCGAGCTGTTCGGTGTCCTCTATTTCGGATTGCCGGGCGTTAGAACGACCTACCGCGAGAAGGTGCGGAACGATATACGTCTCGTGGCAGCATGTTTGCATCGGATGAATCCGACCACACCGTCTTTAGAG","5.20","-7.60","28663","MTLWMAVALLVLIAGMAFMTLWKPKDPWQADNLPPEGSSDQFRRKGIIDADASSLLVPVPAAVDSLPCFLVIDTETTGLPADETQFISGVDAPAPVSVGWQLLDFRFRCIEEVVCRLSTDEPVSPEAAALHGITDASLHGDDPHEVYARLLGAVSKAKVLSAHNLAFHRSVLVYDMRRRGFDPSPLFSLDDYCTMEAGVDFTHLYGSCGTWKLPRLTELFGVLYFGLPGVRTTYREKVRNDIRLVAACLHRMNPTTPSLE","193633 194412","TIGR ID: PG0172","conserved hypothetical protein (possible exonuclease)","Cytoplasm","In gapped BLAST residues 70-224 show 30% similarity to ref|NP_077611, an exonuclease from Ectocarpus siliculosus virus. There are also weak hits to DNA pol III epsilon chain sequences.","
InterPro
IPR012337
Domain
Polynucleotidyl transferase, Ribonuclease H fold
SSF53098\"[68-226]TRNaseH_fold
InterPro
IPR013520
Domain
Exonuclease, RNase T and DNA polymerase III
PF00929\"[69-237]TExonuc_X-T
noIPR
unintegrated
unintegrated
G3DSA:3.30.420.10\"[69-227]TG3DSA:3.30.420.10


","BeTs to 6 clades of COG0847COG name: DNA polymerase III epsilon subunit (3'-5' exonuclease)Functional Class: LThe phylogenetic pattern of COG0847 is a---YQvcEbRHuj---lINxNumber of proteins in this genome belonging to this COG is 3","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Apr 25 13:58:18 MDT 2001","Wed Apr 25 13:58:18 MDT 2001","Wed Apr 25 13:58:18 MDT 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Feb 23 12:14:49 MST 2001","-43% similar to PDB:1J53 Structure of the N-terminal Exonuclease Domain of the Epsilon Subunit of E.coli DNA Polymerase III at pH 8.5 (E_value = );-43% similar to PDB:1J54 Structure of the N-terminal exonuclease domain of the epsilon subunit of E.coli DNA polymerase III at pH 5.8 (E_value = );-43% similar to PDB:2GUI Structure and Funciton of Cyclized Versions of the Proofreading Exonuclease Subunit of E. coli DNA Polymerase III (E_value = );-43% similar to PDB:2IDO Structure of the E. coli Pol III epsilon-Hot proofreading complex (E_value = );-45% similar to PDB:2P1J Crystal structure of a polC-type DNA polymerase III exonuclease domain from Thermotoga maritima (E_value = );","","","Residues 69 to 237 (E-value = 5.7e-05) place PG0158 in the Exonuc_X-T family which is described as Exonuclease (PF00929)","Wed Apr 25 13:58:18 MDT 2001","34540032","","","","","","1","","","PG0172" "PG0159","194831","194481","351","ATGAAGAAGTTGATGGCTGCCATCAGGGAATTGGAATCCAATCTTTTGGATTCCGCCGGATGCGATCTCAATCAGGCCATGCTCCTGTGCGTGATAGCCGATGATTCGCTATCAGCGACCGAAATAGCCTCGCAAATAGGCGTATTGCCGGCCCAAAACTCCAAGTTGCTTGCAGCTGCAGAAGACAGAGGATGGGTCATGCGCAGGCTGGGACATGACGACAAGCGAAAGATTTATTTCAATCTGACGGAAGAAGGTCGAAGGCAATTGGAAAAGGTAAAAGCACTGAACATCGATGTGCCGGATCTGATCCGACCCATATTGGATTCATCCGAGGACAAGAGGAGGGAG","5.30","-1.86","13118","MKKLMAAIRELESNLLDSAGCDLNQAMLLCVIADDSLSATEIASQIGVLPAQNSKLLAAAEDRGWVMRRLGHDDKRKIYFNLTEEGRRQLEKVKALNIDVPDLIRPILDSSEDKRRE","194858 194481","TIGR ID: PG0173","hypothetical protein","Cytoplasm, Periplasm","No significant hit found in gapped BLAST with E value less than e-04. Subthreshold hits to numerous, but short, transcriptional regulatory sequences of the MarR family.","
InterPro
IPR000835
Family
Bacterial regulatory protein, MarR
PF01047\"[21-89]TMarR
PS50995\"[1-117]THTH_MARR_2
InterPro
IPR011991
Domain
Winged helix repressor DNA-binding
G3DSA:1.10.10.10\"[24-93]TWing_hlx_DNA_bd
noIPR
unintegrated
unintegrated
SSF46785\"[1-112]TSSF46785


","BeTs to 3 clades of COG1846COG name: Transcriptional regulators, MarR/EmrR familyFunctional Class: KThe phylogenetic pattern of COG1846 is amtk--V-EBR----------Number of proteins in this genome belonging to this COG is 2","***** IPB000835 (Bacterial regulatory protein, MarR family) with a combined E-value of 7.4e-08. IPB000835 53-86","No significant hit to the ProDom database.","","Tue Jun 12 18:17:33 MDT 2001","","Tue Jun 12 18:17:33 MDT 2001","Tue Jun 12 18:17:33 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Tue Jun 12 18:17:33 MDT 2001","Tue Jun 12 18:17:33 MDT 2001","","","Tue Jun 12 18:22:37 MDT 2001","Tue Jun 12 18:22:37 MDT 2001","Wed Apr 25 14:05:59 MDT 2001","Fri Feb 23 12:20:08 MST 2001","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Feb 23 12:20:08 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Apr 25 14:05:59 MDT 2001","34540033","","","","","","1","","","PG0173" "PG0160","197718","194905","2814","TTGGTTCGGGAAGCAAAAAATTTACGCGCGAGAACGAAAAAAATCTCGCTCCACATTTGCAGGAAACACGCACCGCAATCGGAGGATTTTCGGTGCGTATTTCTGAGACAGCAGGTTATTGACCGGGACATCGAAGCAATGGCCAAACCTTATGATTTCTATATCGTTTGGAAACTGTCCTACAATCACGTCTTTACCATACATCCAAGGCATACCATCTTAGAGCTGCCACCTGTCTATCCCGACACCGCTCTCGTTCCGTTCTTCATTATGCGTTTTTCATTTTTCGACCATATGATTTCCTGTGAATATATTTTCCACAGGAAATTGTTTGTATGTTTGCACCGGAAAAACAAACAAAAACAGAAATCAAATATGAGATACGTAATCGTAGGCGGAGTCGCCGGAGGAGCTACAGCAGCAGCCAGACTAAGGAGAATAGACGAAAAAGCAGAAATCATCTTGTTCGAGAAAGGACAGAATATATCGTATGCCAACTGCGGCCTGCCGTATTATATAGGTGGGGTAATCAAAGAGAGAGAAAATCTTTTCGTGCAGACACCCGAAAAATTCGGCCGACTGCTGAACTTGGATGTTCGGGTACAGAGTGAGGTGCTGTCCATCGATCGCTCCGACAAACAGATAAGAGTGCGCGAAGCCAATGGTAGAGAATATAGTGAGCACTATGACAAATTGCTGCTTTCCCCCGGAGCCTTGCCTTTTGTCCCTCCACTGCCGGGGGTAGATAGCCCGGGAGTATTCACGCTACGCAACGTAGAGGATACGGATGCCATTAAAAGTTATTTGGACACCCACAAGGTGAAACGTGCCATCGTGGTGGGAGGTGGATTTATCGGCTTGGAAATGGCCGAGAATCTACATGCCCGAGGCATTGCTGTCAATGTCATCGAGATGGCTCCACAGGTAATGGCACCGGTGGATTTCTCGATGGCAACGATCGTTCATGCCCACCTGCAAGAAAAAGGTATTGGTCTCTATCTGGGCAAAGCGGTGAAAAGTATTGAAAAACGGGGAGAAGTATTGACTGCTTCGCTTGACTCGGGCGAAAAAATCGAGGCCGAACTCATCCTTCTGTCTATCGGAGTGCGTCCGAATACGAAGCTGGCAGCTGATGCACAGTTGGCTATCGGACCGGCACGCGGAATCCGAGTGAATGAATACCTGCAGACATCCGATCCGGACATCTATGCCATCGGAGACGCCATCGAATACCCACACCCTCTTACCGGAAAGCCGTGGACCAATTTCCTGGCAGGGCCGGCCAATCGGCAAGGGCGCATCGTAGCGGATAATATGCATGGACAAACATTGCGGAGTTATGAAGGAGCCATAGGAACAGCTATTGCCAAGATTTTCGATCTCACGGTTGCAGCTACAGGTTTGCCGGCAAAGGCTCTCAAGCGCGAAGGCCTTCCCTATGAGTCAGTGACGGTACAGCCCAACAGCCACGCCGGCTATTATCCCAATGCCTACCCGCTTACGCTTAAAATCACCTTCCACCCAGAGAGCGGTATGCTCTACGGTGCTCAGTGTGTAGGCATAGAAGGCGTGGACAAGCGAATAGACTCCATCGCTCAAATCATCAAGCGCAAAGGCGGAATCGCCGATCTGATGCAAACGGAGCAAGCCTATGCACCTCCATTCTCTTCGGCCAAGGATCCGGTAGCTTTGGCAGGATATGTGGCCGACAATATCATTACAGGTCGTATGAAACCTCTGCATTGGCGCGAAATGAAAGAGGTCGATCCCAATCGAGTAACCCTTATAGATGCTCGTCCCAGACAGGCCTACGAAGTAGAGCATATCCCGGGAGCAATCAGCATGCCGGTGGAGGAAATAAGGGCACGCATAGGGGAAATTCCTCACGACAAACCGATCTATGTATATTGCGCCGTGGGGATGAGGGGGTATTTCGCCTCGAACATCCTGAGACAATGTGGTTTCTCAAATGTGCGAAACCTGATCGGTGGCTATCGCTTGTATTCTACCATAACGGCAGACTACAGTTCTGCCGGCCAACCTGCCACCGCCCAACTTCCTGCAAAGGATAGTCCTTCTTCCCATACACAGGTACCGGAGGTGGATGCCTGTGGCATGTCCTGTCCGGGGCCGATCCTCAAGCTCAAACAATCCATTGACCAAATAGCTGTAGGAGAGCAGCTCTGCATCCTGGCTACCGACCCCGGATTTGCTCGTGATGCTCAAGCCTGGTGCGACACGACCGGACACAATCTGATCCGGCAGGAGACCATAAAGGGCAAATACAAAGTGACCATCGAAAAGACTGCTTGCAAGGAGGAAGGCACCTGCGTGAACGAGACTCCATCCAAAGGCAAGACATTCATTCTCTTCAGCGATGATCTGGACAAGGCTTTGGCCACATTCGTATTGGCCAACGGAGCAGCAGCGATGGGACAGCCGGTGACTATATTCTTTACTTTCTGGGGGTTGAATGCCATCAAAAAGCCTCACGCCGTCAAAGCGAAGAAAGACATTTGGGGCAAGATGTTCGGTATGATGCTTCCGAAGAACAGCAAAGGGTTAGGACTGTCCAAAATGAACATGTTCGGCTTGGGAGCGAAGATGATGCGTATGGTCATGAAGGAAAAGCATGTGGACTCACTGGAGAGCATGCGTAAACAAGCGTTGGAAAACGGTGTAGAGTTTATAGCCTGTCAGATGTCCATGGATGTAATGGGGATCAATCGGGAAGAATTGCTCGACGAGGTAAGTATCGGTGGAGTTGCCACCTATATGAATAGAGCAGAAGAGGCCAACATCAATCTATTCATC","8.80","18.15","103906","LVREAKNLRARTKKISLHICRKHAPQSEDFRCVFLRQQVIDRDIEAMAKPYDFYIVWKLSYNHVFTIHPRHTILELPPVYPDTALVPFFIMRFSFFDHMISCEYIFHRKLFVCLHRKNKQKQKSNMRYVIVGGVAGGATAAARLRRIDEKAEIILFEKGQNISYANCGLPYYIGGVIKERENLFVQTPEKFGRLLNLDVRVQSEVLSIDRSDKQIRVREANGREYSEHYDKLLLSPGALPFVPPLPGVDSPGVFTLRNVEDTDAIKSYLDTHKVKRAIVVGGGFIGLEMAENLHARGIAVNVIEMAPQVMAPVDFSMATIVHAHLQEKGIGLYLGKAVKSIEKRGEVLTASLDSGEKIEAELILLSIGVRPNTKLAADAQLAIGPARGIRVNEYLQTSDPDIYAIGDAIEYPHPLTGKPWTNFLAGPANRQGRIVADNMHGQTLRSYEGAIGTAIAKIFDLTVAATGLPAKALKREGLPYESVTVQPNSHAGYYPNAYPLTLKITFHPESGMLYGAQCVGIEGVDKRIDSIAQIIKRKGGIADLMQTEQAYAPPFSSAKDPVALAGYVADNIITGRMKPLHWREMKEVDPNRVTLIDARPRQAYEVEHIPGAISMPVEEIRARIGEIPHDKPIYVYCAVGMRGYFASNILRQCGFSNVRNLIGGYRLYSTITADYSSAGQPATAQLPAKDSPSSHTQVPEVDACGMSCPGPILKLKQSIDQIAVGEQLCILATDPGFARDAQAWCDTTGHNLIRQETIKGKYKVTIEKTACKEEGTCVNETPSKGKTFILFSDDLDKALATFVLANGAAAMGQPVTIFFTFWGLNAIKKPHAVKAKKDIWGKMFGMMLPKNSKGLGLSKMNMFGLGAKMMRMVMKEKHVDSLESMRKQALENGVEFIACQMSMDVMGINREELLDEVSIGGVATYMNRAEEANINLFI","197718 194905","TIGR ID: PG0174","NADH oxidase/peroxidase","Cytoplasm","Numerous hits in gapped BLAST to NADH oxidases, e.g. residues 127-668 are 48% similar to the enzyme from V.cholerae (gb|AAF96545).This sequence is similar to BT2434.","
InterPro
IPR001100
Family
Pyridine nucleotide-disulphide oxidoreductase, class I
PR00411\"[127-149]T\"[276-301]T\"[361-375]T\"[402-409]TPNDRDTASEI
InterPro
IPR001327
Domain
Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region
PD000139\"[237-314]TQ7MXK3_PORGI_Q7MXK3;
PF00070\"[276-368]TPyr_redox
InterPro
IPR001455
Family
SirA-like
PF01206\"[699-768]TSirA
PS01148\"[701-725]TUPF0033
InterPro
IPR001763
Domain
Rhodanese-like
PF00581\"[578-671]TRhodanese
SM00450\"[578-674]TRHOD
PS50206\"[589-673]TRHODANESE_3
InterPro
IPR004099
Domain
Pyridine nucleotide-disulphide oxidoreductase dimerisation region
G3DSA:3.30.390.30\"[461-569]Tno description
PF02852\"[453-563]TPyr_redox_dim
InterPro
IPR012456
Family
Protein of unknown function DUF1661
PF07877\"[1-31]TDUF1661
InterPro
IPR013027
Domain
FAD-dependent pyridine nucleotide-disulphide oxidoreductase
PR00368\"[127-149]T\"[232-241]T\"[276-301]T\"[361-375]T\"[402-409]TFADPNR
PF07992\"[127-413]TPyr_redox_2
noIPR
unintegrated
unintegrated
G3DSA:3.30.110.40\"[700-770]Tno description
G3DSA:3.40.250.10\"[577-669]Tno description
G3DSA:3.50.50.60\"[118-259]T\"[272-442]Tno description
PTHR22912\"[129-573]TDISULFIDE OXIDOREDUCTASE
PTHR22912:SF2\"[129-573]TNADH OXIDASE-RELATED


","BeTs to 10 clades of COG0446COG name: Uncharacterized NAD(FAD)-dependent dehydrogenasesFunctional Class: RThe phylogenetic pattern of COG0446 is AmtKyQVCE-R---gpol---Number of proteins in this genome belonging to this COG is 2","***** IPB001455 (Uncharacterized protein family UPF0033) with a combined E-value of 4.5e-07. IPB001455 698-730","Residues 196-565 are 36% similar to a (OXIDOREDUCTASE FLAVOPROTEIN FAD REDUCTASE REDOX-ACTIVE) protein domain (PD000139) which is seen in NAOX_METJA.Residues 701-769 are 42% similar to a (PROTEIN INTERGENIC REGION CONSERVED) protein domain (PD004783) which is seen in O54608_AAAAA.Residues 783-938 are 48% similar to a (PROTEIN SIMILAR BACILLUS SUBTILIS YRKE PLASMID) protein domain (PD021993) which is seen in YRKE_BACSU.Residues 613-664 are 50% similar to a (PROTEIN INTERGENIC REGION SHOCK) protein domain (PD002503) which is seen in O29847_ARCFU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Feb 23 12:30:06 MST 2001","Wed Dec 17 10:58:04 2003","Mon Apr 2 12:23:54 MDT 2001","Fri Feb 23 12:30:06 MST 2001","Fri Feb 23 12:30:06 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 232-480 are 31% similar to residues 137-364 of PG0721, a predicted pyruvate dehydrogenase component.","Mon Apr 2 12:23:54 MDT 2001","Fri Feb 23 12:30:06 MST 2001","-56% similar to PDB:1YQZ Structure of Coenzyme A-Disulfide Reductase from Staphylococcus aureus refined at 1.54 Angstrom resolution (E_value = 3.6E_65);-51% similar to PDB:1NHR AN L40C MUTATION CONVERTS THE CYSTEINE-SULFENIC ACID REDOX CENTRE IN ENTEROCOCCAL NADH PEROXIDASE TO A DISULFIDE (E_value = 5.4E_45);-51% similar to PDB:1JOA NADH PEROXIDASE WITH CYSTEINE-SULFENIC ACID (E_value = 7.1E_45);-51% similar to PDB:1NPX STRUCTURE OF NADH PEROXIDASE FROM STREPTOCOCCUS FAECALIS 10C1 REFINED AT 2.16 ANGSTROMS RESOLUTION (E_value = 7.1E_45);-51% similar to PDB:2NPX NADH BINDING SITE AND CATALYSIS OF NADH PEROXIDASE (E_value = 7.1E_45);","","","Residues 127 to 418 (E-value = 1.1e-74) place PG0160 in the Pyr_redox family which is described as Pyridine nucleotide-disulphide oxidoreductase (PF00070)Residues 453 to 563 (E-value = 1.9e-12) place PG0160 in the Pyr_redox_dim family which is described as Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain (PF02852)Residues 578 to 671 (E-value = 1e-15) place PG0160 in the Rhodanese family which is described as Rhodanese-like domain (PF00581)Residues 699 to 768 (E-value = 7e-08) place PG0160 in the UPF0033 family which is described as Uncharacterized protein family UPF0033 (PF01206)","Wed Dec 17 10:58:04 2003","34540034","","","","","","1","","","PG0174" "PG0161","198748","199098","351","ATGAAGTTAAACAAAATGTTTTTGGTCGGAGCATTGCTCTCATTGGGCTTTGCTTCTTGTAGTAAAGAGGGCAATGGGCCCGATCCGGACAATGCGGCGAAGTCGTATATGTCTATGACATTGTCCATGCCTATGGGAAGTGCTCGTGCGGGTGACGGACAGGATCAAGCTAACCCTGACTACCATTATGTAGGAGAGTGGGCAGGAAAAGACAAAATTGAGAAAGTGAGCATCTACATGGTGCCTCAGGGTGGCCCTGGGCTTGTGGAGAGTGCTGAAGATCTTGATTTTGGTACATATTATGAAAATCCTACTATAGATCCTGCAACCCACAATGCCATTTTGAAACAT","4.70","-5.34","12558","MKLNKMFLVGALLSLGFASCSKEGNGPDPDNAAKSYMSMTLSMPMGSARAGDGQDQANPDYHYVGEWAGKDKIEKVSIYMVPQGGPGLVESAEDLDFGTYYENPTIDPATHNAILKH","198679 199098","TIGR ID: PG0176","Pg-II fimbriae c","Periplasm","This sequence corresponds to gi:47826535 in Genbank.This sequence corresponds to gi:22255321 in Genbank.This sequence corresponds to gi:22255316 in Genbank.","
noIPR
unintegrated
unintegrated
PS51257\"[1-20]TPROKAR_LIPOPROTEIN
signalp\"[1-18]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 1-116 are identical to a (PRECURSOR SIGNAL CELL SURFACE PROTEIN PGA67 A FIMBRILLIN) protein domain (PD025415) which is seen in Q51819_PORGI.","","Tue Jun 12 18:21:14 MDT 2001","","Tue Jun 12 18:21:14 MDT 2001","Tue Jun 12 18:21:14 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Tue Jun 12 18:21:14 MDT 2001","Tue Jun 12 18:21:14 MDT 2001","","Fri Mar 18 10:34:46 2005","Fri Mar 18 10:34:46 2005","Fri Mar 18 10:34:46 2005","Fri Feb 23 13:26:09 MST 2001","","Sun Jun 24 14:19:00 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Feb 23 13:26:09 MST 2001","-42% similar to PDB:1KBV NITRITE-SOAKED CRYSTAL STRUCTURE OF THE SOLUBLE DOMAIN OF ANIA FROM NEISSERIA GONORRHOEAE (E_value = );-42% similar to PDB:1KBW CRYSTAL STRUCTURE OF THE SOLUBLE DOMAIN OF ANIA FROM NEISSERIA GONORRHOEAE (E_value = );-45% similar to PDB:2AC1 Crystal structure of a cell-wall invertase from Arabidopsis thaliana (E_value = );-50% similar to PDB:1Z2I CRYSTAL STRUCTURE OF Agrobacterium tumefaciens MALATE DEHYDROGENASE, NEW YORK STRUCTURAL GENOMICS CONSORTIUM (E_value = );-44% similar to PDB:1ZC0 Crystal structure of human hematopoietic tyrosine phosphatase (HePTP) catalytic domain (E_value = );","","","No significant hits to the Pfam 11.0 database","Sun Jun 24 14:19:00 MDT 2001","","","See Fimbrillins","","Fri Mar 18 10:34:46 2005","","1","","","PG0176" "PG0162","199227","200381","1155","ATGAGTACAAATATAAGCCTATTCGCCCAAGTTATCCGCCTGTTGCCTCGTCCATTGATTAAGAAGCTCTCTACAGAGTTTCAGGTAGACAAGCACAGCAAGCATTTCACCTCATGGCAGCACTTAGTGAGCATGATTTTCAGCCAATTCTCAAGCTGTATCTCCTTACGCGAGATTAGTAATGGCTTACGCTCAGCCACAGGTAACCTCAACCACTTAGGCATATGCACAGCACCCTCTAAGTCCAATTTATCTTATCAGAACGAGCACCGTACCTCAGACTTCTTTCGAGCGTGCTATTATGCCTTGCTAGATTATTTCGGACAGCAGGGTATGGGGCAAGGGCGTAAGTTTCGTTTTAAGCAACCCGTCAAGCTTCTAGACTCTACGACCATTACCCTTTGCCTTGCCCTATACGATTGGGCTAAATACACACATACGAAGGGAGCTGTTAAGCTTCATACACTCTTAGACTTCAAGACTCTGTTGCCTGAATATGTGCATATTAGTGATGGTAAAGGACATGATGGCAAGATGGCCAATTCTATTCCTATCCCAGCAGGAAGTATCGTCGTGGCTGACCGTGGCTATGCTGATACCGCCTTGCTCAATAGTTGGGACAGCACCCAAGTGAGTTTTGTAGTACGCCACCCAAGGTCCTTAAAATATGAGGTTATTCAAGAGTTGGAACTCCCAGAACATGGGCATCAGCAAATACTCGTAGATCAGAGAGTACGGCTCACAGGCGTTCAGACGCAAGGCAAGTACACTAAGCCATTGAGGCATATTGCCCTCTACAACGAGCAACATGGCGATGTCGTTGAGTTATTGACCAACATAGACACCCTTGCAGCAAGTAGTATAGCCTTGCTGTATCGTTCAAGATGGCTTATCGAGATTTTCTTTCGGAATTTGAAGCAACGCCTCAGCATGAAGGCCTTTCTTGGAACAACGCGCAATGCCGTAGAGGTGCAAATATGGACGGCTCTTATTACAATGCTTTTGATGGTCTATCTCAAGAGTATCGCCAAATATCGGTGGTGCTTGTCTAATCTTGTCTCTTCGCTAAGAATCAACACATTTACCAAGATGGATCTGATGCAATGGCTTAATGAGCCGTTTACGCCTCCGCCAGAGCCCGAAAATCAGCTCTTT","10.20","16.13","44087","MSTNISLFAQVIRLLPRPLIKKLSTEFQVDKHSKHFTSWQHLVSMIFSQFSSCISLREISNGLRSATGNLNHLGICTAPSKSNLSYQNEHRTSDFFRACYYALLDYFGQQGMGQGRKFRFKQPVKLLDSTTITLCLALYDWAKYTHTKGAVKLHTLLDFKTLLPEYVHISDGKGHDGKMANSIPIPAGSIVVADRGYADTALLNSWDSTQVSFVVRHPRSLKYEVIQELELPEHGHQQILVDQRVRLTGVQTQGKYTKPLRHIALYNEQHGDVVELLTNIDTLAASSIALLYRSRWLIEIFFRNLKQRLSMKAFLGTTRNAVEVQIWTALITMLLMVYLKSIAKYRWCLSNLVSSLRINTFTKMDLMQWLNEPFTPPPEPENQLF","199200 200381","Member of the IS5 family of IS elements.TIGR ID: PG0177","ISPg4 transposase","Inner membrane, Cytoplasm","PG0162 is equivalent to the previously sequenced AF148127 transposase in GenBANK. Limited hits to IS4-related transposases of P. gingivalis and other pathogens in gapped BLAST. Residues 20-337 are 27% similar to the transposase of B. subtilis (AB031551).","
InterPro
IPR002559
Domain
Transposase, IS4-like
PF01609\"[124-335]TTransposase_11
InterPro
IPR012337
Domain
Polynucleotidyl transferase, Ribonuclease H fold
SSF53098\"[185-350]TRNaseH_fold


","No hit to the COGs database.","***** PF01609 (Transposase (IS4 family)) with a combined E-value of 1.4e-08. PF01609B 288-309","Residues 271-336 are 45% similar to a (TRANSPOSASE PUTATIVE PLASMID ELEMENT) protein domain (PD003301) which is seen in Y4ZB_RHISN.","","Tue Jun 12 18:23:45 MDT 2001","","Tue Jun 12 18:23:45 MDT 2001","Tue Jun 12 18:23:45 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Tue Jun 12 18:23:45 MDT 2001","Tue Jun 12 18:23:45 MDT 2001","","Fri Feb 9 09:21:27 MST 2001","Fri Feb 9 09:18:13 MST 2001","Tue Jun 12 18:31:22 MDT 2001","Mon Dec 4 11:36:32 MST 2000","Tue Jun 12 18:23:45 MDT 2001","Tue Jun 12 18:23:45 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG0162 is paralogously related to PG1461, PG1114, PG1920, PG0043, PG1447, PG0868, PG0445, PG0205, and PG0016, all predicted ISPg4-related transposases.","Fri Feb 9 09:18:13 MST 2001","Tue Jun 12 18:23:45 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 124 to 335 (E-value = 6.9e-43) place PG0162 in the Transposase_11 family which is described as Transposase DDE domain (PF01609)","Tue Jun 12 18:23:45 MDT 2001","34540035","","Sawada,K., Kokeguchi,S., Hongyo,H., Sawada,S., Miyamoto,M.,Maeda,H., Nishimura,F., Takashiba,S. and Murayama,Y.Identification by subtractive hybridization of a novel insertionsequence specific for virulent strains of porphyromonas gingivalis. Infect. Immun. 67 (11), 5621-5625 (1999)","Nagai,T., Phan Tran,L.S., Inatsu,Y. and Itoh,Y.A new IS4 family insertion sequence, IS4Bsu1, responsible forgenetic instability of poly-gamma-glutamic acid production inbacillus subtilis. J. Bacteriol. 182 (9), 2387-2392 (2000)","Fri Feb 9 09:21:27 MST 2001","Fri Feb 9 09:21:27 MST 2001","1","","4","PG0177" "PG0163","200458","201840","1383","ATGCCTCAAGAAGAAACTTTTAGGACACTAATGATTTTGAAACCCAAAAAAGGCATCAAGGTTAATTCTGCAGTCGGCAAGACGGTTAAAGTATATGTGGTGCTCAATGACATCGCAGGCAAGGCAAAAGCCCTTTTGGCAAATGTTAATGCAGCAGACTTTGATGCTAAATTCAAAGAGGTAATCGAACTGTCTACTCAGGCTCAAGCTTTAGGTACGGTAGCCGATGGCCCAAATCCTGCTACGGCGGCTGGAAAGATTGCCAAAAAGAATGGTACTACTGATGAGACAATCATGATGACCTGTTTGCAGCCTTCTGATGCTTTGACTATCGAAGCTGCTGTATCCGAGGCCAATGCTATCGCAGGGATTAAGAATCAGGCCAAGGTTACGGTGGAGCGTTCTGTAGCACGTGCGATGGTTTCAACGAAAGCCCAGAGCTATGAAATTAAAGCTACTACTCAAATTGGTAGTATTGCTGCTGGTGATGTTTTGGCTACCATTACGGATATCAGATGGGTTGTTGCTCAAGGAGAACGTCGCCAATACCTAAGCAAGAAAAGAGGAACTGTTCCAGAAAATACTTGGGTTACTCCGGGCTCTGGTTTCGTTCCTACTAGCAGCACTTTCCATACAAATGCTACCGAGTATTATGATTATGCCGGTCTGTGGGAAGATCATAATACAAATGAGGCCGTAATCAGTGGAACTCAAGTGCCGACTTTGGCTGATTATCAGCTCCAGGACGTGACTGGCGAATTGGCAAATGCCCTTTCAGGGAAATTCCTGCTGCCTAATACCCATAAGTCAGGTGCTAATGCTGCTTCGTCAGACTATAAGAGAGGTAATACTGCCTATGTATTGGTTCGTGCGAAGTTTACTCCCAAGAAAGAAGCCTTTATCGATAGAGGTAAAACTTATTCAGATAATACTGCAGTTCCTGAATATGTAGCAGGTGAAGATTTCTTCGTTGGTGAGAATGGCCAGTTCTATGTGTCTATGAAATCCGTTACAGACCCCAAGGTAGGTGGTGTAGCTGGTATGAAGGCACACAAATATGTGAAAGGCAAAGTACTGTACTATGCTTGGTTGAATCCCAGTACTACTTCTCCCGATTCATGGTGGAATTCTCCCGTTGTGCGCAACAATATCTACCATATCCACATCAAGAGCATCAAGAAGTTGGGCTTCAACTGGAATCCTTTGGTGCCGGATCCGGATCCTAACAATCCGGAAAATCCGAATAACCCTGACCCGAATCCGGATGAGCCGGGTACTCCTGTTCCTACAGATCCGGAGAACCCCTTACCTGATCAGGATACGTTCATGTCGGTTGAGGTTACAGTTTTGCCTTGGAAAGTTCATTCCTATGAGGTTGATCTC","6.70","-1.34","50074","MPQEETFRTLMILKPKKGIKVNSAVGKTVKVYVVLNDIAGKAKALLANVNAADFDAKFKEVIELSTQAQALGTVADGPNPATAAGKIAKKNGTTDETIMMTCLQPSDALTIEAAVSEANAIAGIKNQAKVTVERSVARAMVSTKAQSYEIKATTQIGSIAAGDVLATITDIRWVVAQGERRQYLSKKRGTVPENTWVTPGSGFVPTSSTFHTNATEYYDYAGLWEDHNTNEAVISGTQVPTLADYQLQDVTGELANALSGKFLLPNTHKSGANAASSDYKRGNTAYVLVRAKFTPKKEAFIDRGKTYSDNTAVPEYVAGEDFFVGENGQFYVSMKSVTDPKVGGVAGMKAHKYVKGKVLYYAWLNPSTTSPDSWWNSPVVRNNIYHIHIKSIKKLGFNWNPLVPDPDPNNPENPNNPDPNPDEPGTPVPTDPENPLPDQDTFMSVEVTVLPWKVHSYEVDL","200458 201840","The following comment was kindly provided by Richard J. Lamont, Professor, University of Florida.PG0163 is clearly the Hamada minor fimA. Chung et al. (2000, and note correction in Infection and Immunity, 2001, 69 (12) 7964) provide evidence that PG0163 binds to the SspB protein of S.gordonii. TIGR ID: PG0178","Mfa1 protein, 67 kDa fimbrillin","Periplasm, Extracellular","This sequence corresponds to gi:22255314 in Genbank.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Thu Mar 17 15:39:09 2005","Thu Mar 17 15:55:51 2005","Thu Mar 17 13:38:02 2005","Fri Feb 23 13:52:37 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Feb 23 13:52:37 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Apr 25 14:22:38 MDT 2001","","","See Fimbrillins
Park Y, Simionato MR, Sekiya K, Murakami Y, James D, Chen W, Hackett M, Yoshimura F, Demuth DR, Lamont RJ.The short fimbriae of Porphyromonas gingivalis and their role in coadhesion with Streptococcus gordonii.In pressOshikawa M, Sugano N, Koshi R, Ikeda K, Ito K.Differential gene induction in macrophage-like human cells by two types of Porphyromonas gingivalis: a microarray study.J Oral Sci. 2004 Mar;46(1):9-14.PMID: 15141718Chung WO, Demuth DR, Lamont RJ.Identification of a Porphyromonas gingivalis receptor for the Streptococcus gordonii SspB protein.Infect Immun. 2000 Dec;68(12):6758-62.PMID: 11083792Hongyo H, Kokeguchi S, Kurihara H, Miyamoto M, Maeda H, Takashiba S, Murayama Y.Comparative study of two outer membrane protein genes from Porphyromonas gingivalis.Microbios. 1998;95(381):91-100.PMID: 9871998Hongyo H, Kurihara H, Kokeguchi S, Miyamoto M, Maeda H, Hayakawa M, Abiko Y, Takashiba S, Murayama Y.Molecular cloning and characterization of the gene encoding 53 kD outer membrane protein of Porphyromonas gingivalis.Microbios. 1997;92(370):47-57.PMID: 9569663Hamada N, Sojar HT, Cho MI, Genco RJ.Isolation and characterization of a minor fimbria from Porphyromonas gingivalis.Infect Immun. 1996 Nov;64(11):4788-94.PMID: 8890240Ogawa T, Yasuda K, Yamada K, Mori H, Ochiai K, Hasegawa M.Immunochemical characterisation and epitope mapping of a novel fimbrial protein (Pg-II fimbria) of Porphyromonas gingivalis.FEMS Immunol Med Microbiol. 1995 Jun;11(3):247-55.PMID: 7581276Kokeguchi S, Miyamoto M, Ohyama H, Hongyo H, Takigawa M, Kurihara H, Murayama Y, Kato K.Biochemical properties of the major outer membrane proteins of Porphyromonas gingivalis.Microbios. 1994;77(313):247-52.PMID: 8208139","","Thu Mar 17 15:59:28 2005","","1","","4","PG0178" "PG0164","201923","202894","972","ATGAACAAACGGAAGCATATGGATATTCGCAGACTTATTATTTCTTTGCCGGCAATAATGGCCCTGTGGGGTGGCTTGGCTTCGTGCGATAAGATGATTTATGACAATTACGATGATTGTCCTCGAGGAGTATATGTCAACTTCTATTCTCAGACTGAGTGTGCCGAAAATCCTTCTTATCCTGCGGAAGTTGCCCGATTGAACGTTTATGCTTTCGATAAGGATGGTATCCTTCGCAGTGCCAATGTGTTTGAGGATGTCCAGTTGTCAGCTGCAAAAGAATGGCTGATCCCTTTGGAGAAAGACGGCTTATATACGATTTTTGCTTGGGGTAACATCGACGACCACTATAATATAGGTGAAATAAAAATTGGTGAGACGACCAAGCAGCAGGTTTTGATGCGCTTGAAGCAGGATGGTAAATGGGCGACCAATATAGATGGGACGACCCTTTGGTATGCGACGAGTCCTGTCGTTGAGCTGAAGAATATGGAAGATGGGGCGGATCAGTATATCCATACAAGAGCCAATCTTCGAGAGTATACCAATCGTGTGACGGTGAGTGTAGATAGTCTGCCTCATCCCGAAAATTATGAAATAAAATTGGCCTCGAGCAATGGCTCCTATCGCTTCGATGGTACTGTTGCAAAAGCTGATTCTACTTATTATCCCGGCGAAACCAAAGTAGTAGGTGATAGCACATGCCGGGCTTTCTTTACGACACTCAAACTGGAGAGTGGGCATGAAAATACCCTTTCCGTGACACATAAGCCGACCGGAAGAGAGATATTCCGTACAGACCTTGTAGGTGCTATTCTTTCGAGTCAGTATGCCCAAAATATCAACTTACGCTGTATCAATGACTTCGATATAAGGTTGGTGGCACATCATTGCAACTGCCCTGACGATACTTATGTCGTTGTTCAAATCTGGATCAACGGCTGGTTGATACATAGTTACGAAATAGAACTT","5.30","-9.15","36848","MNKRKHMDIRRLIISLPAIMALWGGLASCDKMIYDNYDDCPRGVYVNFYSQTECAENPSYPAEVARLNVYAFDKDGILRSANVFEDVQLSAAKEWLIPLEKDGLYTIFAWGNIDDHYNIGEIKIGETTKQQVLMRLKQDGKWATNIDGTTLWYATSPVVELKNMEDGADQYIHTRANLREYTNRVTVSVDSLPHPENYEIKLASSNGSYRFDGTVAKADSTYYPGETKVVGDSTCRAFFTTLKLESGHENTLSVTHKPTGREIFRTDLVGAILSSQYAQNINLRCINDFDIRLVAHHCNCPDDTYVVVQIWINGWLIHSYEIEL","201923 202894","MD ORF 1 downstream gene from FimA.TIGR ID: PG0179","conserved hypothetical protein","Cytoplasm","Its nearest neighbor in the NR database is gi:29346472 from Bacteroides thetaiotaomicron VPI-5482","
InterPro
IPR014941
Family
Protein of unknown function DUF1812
PF08842\"[26-321]TDUF1812
noIPR
unintegrated
unintegrated
PS51257\"[1-29]TPROKAR_LIPOPROTEIN


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Tue Mar 1 11:22:18 2005","Tue Mar 1 11:22:18 2005","Tue Mar 1 11:25:02 2005","Fri Feb 23 15:14:49 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Feb 23 15:14:49 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Mar 13 09:49:14 MST 2001","34540036","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Tue Mar 1 11:25:02 2005","","1","","4","PG0179" "PG0165","203195","204532","1338","ATGATGCAGCTTAAAAAGAGATACTTTGCACTTATCCTATTGCTTTTCCTTTGGAGCGGATGCGATAGAGGAGTTGATCCACAGCCGGATCCTTTACAGCCGGATGTTTATCTACTCGTTAACGCGAGAGCAGCACATACGAATGGCGAGGAATCCATCAATATGGATGCCGAGGATTTTGAAGATCGTGTACACAGTCTCGCTATGTTGGTGTTCGATAGCAATACAGGAGAAAAAGTTGCCGAACATTTTTCTTCCTCCATAGGGAGCGGTACTTCTACCTATGTCTTTACTGTGAAATTAAAACCCGGACAGCGCGATTTCTTTTTCGTGGCAAATTTTCCTGGTATGCAGACTGCCATGGCTTCGATCGTGAACAAATCCGATATGAATCACTTTATGCAGGTCCTCAGATATTTGGACCCTATTCATTATCTCAAAGCAACCAATGATAATGGATTCCCCATGTCGAGAATGTATTCCAATCAGACGGTTACGATCGGGGGAACCATCACTCAGCCTTTACCATTCAAGCCGGACGGAGAAAACAATGTGAAGTTGCAGCGTGTGGTTGCAAAGTTGGATGTGAATATCGTGGAAGGAGTGGAAAATCTGCAGAAGATTGAACTTTGTAATGCTAATGTCCACTATAGATTGGTGCCCAATCAGTCAGAGCCTATTCAGTTTTACGGCCCGGTAGAACTAAGGCGAGTAGGTACCACGAACCAATGGCTTGGCTATATGCCGGAGGCGATCGTAGAATCAACAAAGTGGTGGGGGAATACCGGCAATGCTGAGAATAAGCCGATCAACTTCTTCCGCCTGACAACTCGCGGTGGACTTGTATATGACGTGCCGATTATTACGCACGAAGGTGCTATTCCGGGAGGGCAGTACTTACCTTTTGCCAAAGGCTTATTGGCGGATAAGCCGAGTTATACGGTTTATAGGAATCGTCATTACATATATCGTATCAAGACGCTGCCGGATAAGATAGAAGTGAAGTATTCTATTTGCGATTGGAATATAGTAACCAACGATACTTATATGGGCTATGGCTACAACGTGGGAGTCGATGAGCAAGGCAATGTCACCATTACTAATACGATGCAGAATTGTGATCCCCATGTTGTGAGACTCGTTGCTAAAAATGGTGCTTACTTTGGCTCCCAGCCTACCGATACTTCGGTTGAGTTTGCTGAGTTAGCCAACGGTGCTTCGCAAACATTCAAAGTAAATAAAGATGCTGTGGCGGTCGGTTCTGCTTATCTGGAGGTTTATTACAACCCGGATCCGAATGCAACAGGGGTCGTTCCGGATAAAGTTTTTATCAAGAAA","6.40","-3.00","50002","MMQLKKRYFALILLLFLWSGCDRGVDPQPDPLQPDVYLLVNARAAHTNGEESINMDAEDFEDRVHSLAMLVFDSNTGEKVAEHFSSSIGSGTSTYVFTVKLKPGQRDFFFVANFPGMQTAMASIVNKSDMNHFMQVLRYLDPIHYLKATNDNGFPMSRMYSNQTVTIGGTITQPLPFKPDGENNVKLQRVVAKLDVNIVEGVENLQKIELCNANVHYRLVPNQSEPIQFYGPVELRRVGTTNQWLGYMPEAIVESTKWWGNTGNAENKPINFFRLTTRGGLVYDVPIITHEGAIPGGQYLPFAKGLLADKPSYTVYRNRHYIYRIKTLPDKIEVKYSICDWNIVTNDTYMGYGYNVGVDEQGNVTITNTMQNCDPHVVRLVAKNGAYFGSQPTDTSVEFAELANGASQTFKVNKDAVAVGSAYLEVYYNPDPNATGVVPDKVFIKK","203195 204532","TIGR ID: PG0180","lipoprotein","Periplasm, Inner membrane","This sequence corresponds to gi:34396348 in Genbank.","
noIPR
unintegrated
unintegrated
PS51257\"[1-21]TPROKAR_LIPOPROTEIN


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Mar 1 11:28:46 2005","Tue Mar 1 11:28:46 2005","Fri Feb 23 15:16:29 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Feb 23 15:16:29 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Fri Feb 23 15:16:29 MST 2001","34540037","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Tue Mar 1 11:29:04 2005","","1","","4","PG0180" "PG0166","204544","205542","999","ATGAAAAAGTATTTGTTATATGCCTCGTTGCTAACGAGTGTTTTGCTCTTTTCCTGTTCAAAGAACAATCCTAACGAGCCGGTGGAAGACAGATCCATCGAAATTTCTATAAGGGTAGATGATTTCACCAAAACGGGTGAGGCAGTACGCTATGAAAGGAATCAAGGAAGTGCTGCCGAAAGGCTCATTACCAATCTTTACCTCTTGTTGTTCGATCAGTCAGGGGCGAATCCGGCGAAATACTATATTACCGGTAACACTTTCACCGGAGGGACCTGGCTTCCTGACGATATGAAGGTGAAGTTGGATATGACACAATCCGAGGCCGGAGAGCGCAAAGTATATGTCGTAGCCAATGTTGATAATGCGGTTAAAACGGCTCTTGATGCTGTCGCTAACGAAAGCGATTTGCAGACTGTAAAGAGGACGACTGCAATGCCGTGGTCGACCGATATAGCCTCTCCTTTCCTGATGTCCGGAAACAAGACACACGACTTCTTGGCCAATCGTCTTTTGGACAATGTGCCCCTTGTGCGTGCCATTGCCAAGGTGGAGCTGAATATCTCGCTGAGTGAGAAATTTCAGATTGTGCCGATAATTGTCAATGGTAGTTTGAGTGAGTTCAAGTTCAGATACGTAAACTTCGACAAGGAGACCTACGTAGTGAAGCCAACGACCAAGCCGGACAATCTCATTAGTTCTGCTAATGGTGTTTGGCCTCAGATTACAGATTGGACTGTATGGGGTGCTTCCTTAAATACTTCTCCTGCTCCGGATGCGGGCACAGGTTATACATTGGATGCAAATGGCAAGGTAACGGCACTACGGATTGTTACCTATCTGAATGAGCGCGATAGCAAAGGGGCTACGGTAGAGGTCGCATTGCCTCGTGTGGATGATGGCACCCTTCCTCCTCCGGAATTCGGTCCGGAGCTTTATCGTTTGCCTTTGCCGGACAAGATCCTGCGCAATCATTGGTACAAGTATGAAGTCGAGATT","5.20","-4.55","37126","MKKYLLYASLLTSVLLFSCSKNNPNEPVEDRSIEISIRVDDFTKTGEAVRYERNQGSAAERLITNLYLLLFDQSGANPAKYYITGNTFTGGTWLPDDMKVKLDMTQSEAGERKVYVVANVDNAVKTALDAVANESDLQTVKRTTAMPWSTDIASPFLMSGNKTHDFLANRLLDNVPLVRAIAKVELNISLSEKFQIVPIIVNGSLSEFKFRYVNFDKETYVVKPTTKPDNLISSANGVWPQITDWTVWGASLNTSPAPDAGTGYTLDANGKVTALRIVTYLNERDSKGATVEVALPRVDDGTLPPPEFGPELYRLPLPDKILRNHWYKYEVEI","204544 205542","TIGR ID: PG0181","immunoreactive 32 kDa antigen","Outer membrane, Periplasm","PG0166 is equivalent to the previously sequenced gb|AAD51071, a predicted immunoreactive 32kD antigen. No other similarities in gapped BLAST. ","
noIPR
unintegrated
unintegrated
PS51257\"[1-19]TPROKAR_LIPOPROTEIN


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Feb 23 15:23:48 MST 2001","Fri Feb 23 15:23:48 MST 2001","Fri Feb 23 15:23:48 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 5-188 are 24% similar to PG1867, a hypothetical protein.","Mon Apr 2 12:29:46 MDT 2001","Fri Feb 23 15:23:48 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Apr 2 12:29:46 MDT 2001","34540038","","Ross,B.C., Barr,I., Patterson,M., Agius,C., Rothel,L., Margetts,M.,Hocking,D. and Webb,E.Porphyromonas gingivalis polypeptides and nucleic acidsPatent: Australia (AU 98/01023)-PCT 10-DEC-1998; CSL Ltd; 45 Poplar Road; R&D; Parkville, Victoria; Australia;","","Fri Feb 23 15:23:48 MST 2001","","1","","4","PG0181" "PG0167","205692","209369","3678","ATGATGAAACGATATACAATAATTCTTGCAGTTTTTCTTTTATTCTGCACGGTATTTACCTTTCAAATAAAAGCTCGCCCTTATGAAAGATTTGCAGATGTAGAGAAGCCTTGGATTCAGAAACATTCAATGGATTCTAAATTGGTGCCTGCAAATAAGGGTAACTTAATTCAAGCTGAAATTGTATACCAATCTGTTTCTGAACATAGTGACTTAGTTATTTCACCTGTGAACGAAATAAGGCCTGCAAATCGTTTCCCTTCGCATAGGAAGTCTTTTTTTGCAGAAAATCTACGGGCATCTCCCCCCGTAGTTCCCGTTGCCGTCGACAAGTATGCGGTACCGGTTGCCAATCCAATGGATCCTGAAAATCCCAATGCCTGGGATGTGACGCTAAAAATCACTACTAAAGCGGTAACAGTACCTGTCGATGTGGTGATGGTTATCGACCAGTCTTCGTCAATGGGAGGGCAAAACATTGCCAGATTAAAGTCTGCCATTGCATCGGGACAGCGTTTTGTGAAAAAAATGTTGCCTAAGGGGACGGCTACAGAAGGGGTGCGTATCGCTCTTGTGAGTTATGACCATGAGCCTCATCGCTTATCTGATTTTACCAAAGACACTGCTTTTCTCTGTCAAAAAATCCGGGCTTTGACTCCTATTTGGGGAACACATACCCAGGGGGGGCTTAAAATGGCGAGAAACATTATGGCCACTTCTACTGCTGTGGATAAGCATATCATATTGATGTCTGACGGGTTAGCGACGGAGCAGTATCCTGTTAAAAATGTAACTACTGCAGACTTCATTGGCAAAACTGGAAATGCGAATGATCCCATTGATTTGGTTATACAAGGAGCAATTAATTTCCCTACAAATTATGTTTCCAACAATCCATCTACACCTCTTACCCCAAATTATCCAACTCATTCTTCTAAAGTTGGACGGAGAAATCTGCCGGAATCCAAATTCGATTATAGTAATCTGAGTGCAAGGATTACTTTTGATGGTGTTGCTGGCGCATTGGTCTATGAACCGAGGTTTCCTCATCCCTATTATTATTATTTCCCTTGTAACGCTGCTATCAATGAGGCTCAGTTTGCGAAAAACTCTGGTTATACAATCCATACTATTGGCTATGACCTGGGAGATTTTGCCTTGGCCAACAATTCGTTGAAACTAACCGCTACAGACGAGAATCACTTCTTTACGGCGACACCGGCCAATTTAGCTGCAGCGTTTGATAATATTGCCCAAACTATTAATATAGGTATACAGAGGGGGGAGGTGACGGACTTTGTAGCTCCTGGTTTCATCGTTAAAAATCTGACGCAATCGGGAGATGTTACTCATTTGCTAAATGTTTCAAATGGAACGGTGCACTATGATGTCTCTACTAAAAAACTGACATGGACTACTGGTACTATCCTGAGCTCATCAGAAGCTACCATAACTTATCGTATTTATGCCGATTTGGATTATATACAGAACAATGATATTCCGGTAAATACTACTTCTGCTATCGGCCCGGATCTTGGTGGATTCGATACCAATACCGAGGCAAAATTGACCTATACCAATTCCAATGGCGAACCGAATCAGCAGTTAATTTTCCCACGTCCGACGGTTAAGTTAGGTTATGGTGTTATTAAGCGGCACTATGTATTGGTAAATAAAGACGGTCAACCCATACAGGCAAATGGAACAGTTGTCAGTTCCCTAAGCGAGGCTCATGTTCTACAGTCACAAGATTTCTTTTTGCCCTCAGGTGGAGGTCATATTGTTCCCAAATGGATAAAGTTGGACAAAACGACCGAAGCATTACAGTACTATTCCGTACCGCCGACTAACACGGTCATCACTACTGCCGATGGTAAACGTTATCGTTTTGTCGAAGTCCCAGGCTCCACGCCGAATCCGGGCCAAATCGGTATCAGTTGGAAAAAACCGGCAGGAAACGCTTACTTCGCTTACAAGCTCCTCAATTATTGGATGGGAGGAACAACAGACCAACAGAGTGAATGGGATGTGACGTCCAATTGGACAGGAGCCCAAGTACCGCTCACAGGAGAAGATGTAGAGTTTGCAACGACAGAAAATTTCGGTTCTCCGGCGGTAGCCGATTTGCATGTCCCGACAACCAACCCCAAAATTATCGGTAACCTTATCAATAATTCCGACAAGGATTTAGTTGTTACCACAAGCAGTCAATTGACGATCAACGGCGTGGTTGAGGATAACAATCCGAATGTCGGTACGATCGTCGTGAAGTCGTCGAAAGACAATCCTACGGGGACATTGCTTTTTGCCAATCCGGGCTATAATCAAAATGTAGGGGGGACCGTCGAGTTTTACAATCAGGGATATGATTGTGCCGATTGTGGTATGTATCGCAGGAGCTGGCAGTATTTCGGTATCCCTGTCAATGAATCAGGTTTTCCAATTAATGATGTGGGCGGAAACGAGACCGTCAACCAATGGGTTGAGCCTTTCAATGGCGATAAGTGGCGGCCAGCACCTTATGCACCTGATACAGAGCTTCAAAAATTCAAGGGCTACCAGATCACGAATGACGTGCAGGCACAGCCTACGGGAGTTTACAGCTTCAAGGGTATGATTTGTGTGTGCGATGCCTTCCTGAATCTGACACGCACGTCCGGTGTCAACTACTCGGGCGCCAACTTGATCGGCAACTCATACACTGGAGCCATCGACATCAAGCAGGGTATTGTCTTCCCGCCGGAAGTCGAGCAGACGGTGTATCTGTTCAACACGGGAACACGCGACCAGTGGCGTAAGCTTAATGGAAGCACGGTTTCAGGCTATCGAGCCGGTCAGTACCTCTCTGTACCTAAGAATACAGCGGGTCAGGACAATCTTCCGGATCGTATTCCATCGATGCATTCCTTCTTGGTGAAGATGCAGAACGGAGCGTCTTGTACGTTGCAGATCTTGTACGATAAGCTGCTCAAGAACACGACTGTAAACAACGGTAATGGTACGCAGATCACATGGCGATCCGGCAACTCCGGATCGGCGAATATGCCGTCACTTGTGATGGATGTTCTTGGTAACGAGTCGGCCGACCGTTTGTGGATCTTTACCGATGGGGGTCTTTCTTTCGGATTCGACAACGGCTGGGATGGTCGCAAGCTGACTGAAAAAGGTTTGTCACAACTTTATGCGATGTCTGACATCGGTAATGATAAATTCCAGGTTGCAGGGGTTCCGGAGTTGAATAACCTGCTGATCGGCTTCGATGCGGATAAGGATGGTCAATACACGTTGGAGTTTGCTCTTTCGGATCATTTTGCGAAAGGGGCTGTTTACCTGCACGATCTTCAGTCAGGAGCCAAACACCGTATTACGAATTCTACGTCGTATTCATTCGATGCCAAGCGGGGAGATTCCGGGGCTCGTTTCCGCTTGTCATATGGATGTGATGAGAACGTAGATGATTCGCATGTCGTGAGTACAAATGGCCGTGAAATTATAATTCTGAATCAAGATGCTCTTGACTGCACTGTAACCTTATTCACAATAGAAGGTAAGCTTCTTCGCCGCTTGAAAGTATTAGCTGGTCATAGAGAAGTCATGAAAGTGCAGACCGGAGGGGCCTATATTGTGCATCTTCAAAATGCTTTCACTAATGATGTGCATAAGGTGCTTGTTGAGTAT","6.60","-5.38","134650","MMKRYTIILAVFLLFCTVFTFQIKARPYERFADVEKPWIQKHSMDSKLVPANKGNLIQAEIVYQSVSEHSDLVISPVNEIRPANRFPSHRKSFFAENLRASPPVVPVAVDKYAVPVANPMDPENPNAWDVTLKITTKAVTVPVDVVMVIDQSSSMGGQNIARLKSAIASGQRFVKKMLPKGTATEGVRIALVSYDHEPHRLSDFTKDTAFLCQKIRALTPIWGTHTQGGLKMARNIMATSTAVDKHIILMSDGLATEQYPVKNVTTADFIGKTGNANDPIDLVIQGAINFPTNYVSNNPSTPLTPNYPTHSSKVGRRNLPESKFDYSNLSARITFDGVAGALVYEPRFPHPYYYYFPCNAAINEAQFAKNSGYTIHTIGYDLGDFALANNSLKLTATDENHFFTATPANLAAAFDNIAQTINIGIQRGEVTDFVAPGFIVKNLTQSGDVTHLLNVSNGTVHYDVSTKKLTWTTGTILSSSEATITYRIYADLDYIQNNDIPVNTTSAIGPDLGGFDTNTEAKLTYTNSNGEPNQQLIFPRPTVKLGYGVIKRHYVLVNKDGQPIQANGTVVSSLSEAHVLQSQDFFLPSGGGHIVPKWIKLDKTTEALQYYSVPPTNTVITTADGKRYRFVEVPGSTPNPGQIGISWKKPAGNAYFAYKLLNYWMGGTTDQQSEWDVTSNWTGAQVPLTGEDVEFATTENFGSPAVADLHVPTTNPKIIGNLINNSDKDLVVTTSSQLTINGVVEDNNPNVGTIVVKSSKDNPTGTLLFANPGYNQNVGGTVEFYNQGYDCADCGMYRRSWQYFGIPVNESGFPINDVGGNETVNQWVEPFNGDKWRPAPYAPDTELQKFKGYQITNDVQAQPTGVYSFKGMICVCDAFLNLTRTSGVNYSGANLIGNSYTGAIDIKQGIVFPPEVEQTVYLFNTGTRDQWRKLNGSTVSGYRAGQYLSVPKNTAGQDNLPDRIPSMHSFLVKMQNGASCTLQILYDKLLKNTTVNNGNGTQITWRSGNSGSANMPSLVMDVLGNESADRLWIFTDGGLSFGFDNGWDGRKLTEKGLSQLYAMSDIGNDKFQVAGVPELNNLLIGFDADKDGQYTLEFALSDHFAKGAVYLHDLQSGAKHRITNSTSYSFDAKRGDSGARFRLSYGCDENVDDSHVVSTNGREIIILNQDALDCTVTLFTIEGKLLRRLKVLAGHREVMKVQTGGAYIVHLQNAFTNDVHKVLVEY","205626 209369","TIGR ID: PG0182","conserved hypothetical protein; Rsa related","Extracellular, Periplasm","No significant hit found in gapped BLAST with E value less than e-04.Subsequently matches found to CHU0839, CHU0838, CHU0834, CHU0837 and CHU0835.","
InterPro
IPR002035
Domain
von Willebrand factor, type A
PF00092\"[144-264]TVWA
SM00327\"[142-418]TVWA
PS50234\"[144-267]TVWFA
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.410\"[141-257]TG3DSA:3.40.50.410
SSF53300\"[138-421]TSSF53300


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Tue Jun 12 18:28:33 MDT 2001","","Tue Jun 12 18:28:33 MDT 2001","Tue Jun 12 18:28:33 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Tue Jun 12 18:28:33 MDT 2001","Tue Jun 12 18:28:33 MDT 2001","","","Tue Jul 6 12:58:36 2004","Tue Jul 6 13:00:34 2004","Fri Feb 23 15:31:22 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","PG0167 is paralogous to PG0168, a hypothetical. Residues 662-1224 are 78% similar to residues 1631-2209 of PG0168.","Wed Jun 13 07:58:53 MDT 2001","Fri Feb 23 15:31:22 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 144 to 333 (E-value = 3.9e-07) place PG0167 in the VWA family which is described as von Willebrand factor type A domain (PF00092)","Tue Jun 12 18:28:33 MDT 2001","34540039","","","","","","1","","4","PG0182" "PG0168","209569","216180","6612","ATGAAAACATCTGAAAGAATATTAAGTTATTTCTTCCTCTTATGTGCTGTATTCAGTCTGGGCTCATGCGAAGGACTTTATGCACAGGTAACTTTCCCAAATTATTCGCCTACGGCGGCTTCGTCCATTGCTGTATGTTCTGGAGAAGAGACATTGATCATTGACTTTACTGTAGTCCAGGAGGATTCGAATGGTATCAAAGTTAATGTGAAACTTGCCGACGGTGTCGAGTATGTGGTCGGAACGGCTGTCGTAAGTGTTACACAGGGCAATGCAGTGACGGTGGCGGAAACCAATGTTTCTAATCCGAACGAACCTGTATTTACGGTAAAATCGGCGGATGGAAACAATGTGGTAGAGCTTGGAACCATCGTTAAGCTGACGATTAAGAGGAGAGCTGTCTGTACCGCATGGAGCAATGCCATTAATGCTGCCGAAACGGGTTTTGTCTTCAAAGACAAGGTAACGGTGACTATCGGCGATCATAGTGATAGCAAGGAATCAAACTCCTATTCGGTAAACTATCCGAACCTGACGATCAAACAGCCTGCGCCGCAAGTGAACAAGCAGATTGGGGAGACCATCGTACGAGAGTTTTCTATAACCAATGGTTCTCAGAACCCGACCCAGACAGTTTATCTTTCGATAGAGTATCCCGATGAAGCCTACCTCACAGGGGTGGGGGCGATGACGCTTCAGGCTAAACTGGGTGCTTCCGGCACCTATGCCGATCTTACTCCTACCGTCACTAACGGTAAGGTCCGCATCTATACACTTTCGGGTTCCAGTTTGGGGCCTGATCATCTCTTGACCAACGGCGAGATCATCTATCTGAAAGAAACATTTAAGCTGAAAACTTGTGCACCGGTTACGGTCTATAGGGTAGGTTGGGGTTGTAGCATAGATAGCCAGTGTGAGATAAAAACTACCGCTGCTACAATTACTATGGCAGCTGGTGCGGCTAATATCACGGGATATTCAGTTACTGGTCCTGATTATCGTTCTCCAACTTTTTCTCTTTGCCAACCGTTTGAGTTGACTATTAAGTTCTCAAATTCCGGTGCTGGTGGCTCTATGGGGGCAGCATTCAATATCAATACTATTGGTAGAAACGACTATTATAGACCAAGAGGGTTTGTTTTACACGAATTTATTGATGTCAAAGTAAACGGTAAGCCGGTAACGAATTTCAAAACCGATGGCTCAGAGCTCGACCTTCGTTTTGATGGACAGTTTACAGAAGATCCTGACGGACCGGGGGTTGGTTTGGATGATGTTGACGGTGACGGATTTTATGATGATCTTCCTGTCGGAGCTACTATTACGATTACTGTAACGGTGCGGCTAAAGTGTGATCAGTTTACGGCATGCAACAACGCTCCAAATGATTTGTCCGATAGGGGCTTGATTCTTAAAACACTATATCAGACATCTTGTGATAGAACCTCATGGATAGATCCCAACACGTGGTTCAATCTTTCTAGTACTCATTTGTATTTGTCTCGTGAGTCGGTACAAGATGCCTCTCACATGCCTACTGTAATAGAGAAGGATACGCCTTTCGACCTGAAGATAATGACTTCCTACTATTCCATCCTCAGCTCATATAATAATATATGGTACGCCAATCCCAATACGCGGTATGTGGTAGAAATAGTATTCCCGCAAGGTATGACTATGCCTCCCAAATCGGATATAGAATGGACCAATATAAAAAATCATCCGATAGACGGGTCCTTAGTTTTCACTCCACCGATTAACCTCCCTGATGCAAATATCACGACATCAGGAAACACAATGACTATCGTTTCGCCCAGCCAAGAAAGAGGTTTTGTAACCCTCCATGGTGTGAAATACGACTGTACAAATAATCACGAAATGGTTGTGGAGTATAAGATTAGAGAGGTATTCAACTACCTTCACTTCCCTGATTGTCTTTGCCCGGTAGGTCCTATTATGTGTAACACGGCAAAGCGTTATGTTTTGGGCTGCGATCCTCCCTGCGGTAGAGGTGCGGAAACTTCGGTGCCTAAGATAGAACGTGCCGACAATTCGTTGGGCTGGACGGATTATACGATGCGGACCCGTCAATCTCGTAGCAATATATCGGCTTACGACTTGGCTAAAGCCCTATATATGGACGAAGTCAACATTACAGCGACTTCTATCCAGCATGGTACTGCTTCGTCTTTGGGCGCCCGTTTTGTTTTGGCTACGGGTGTCGATCGAGTAGAAACGCTTACTCCTCTTTCGGCCGATATTAAGATCTTCCGTGATGGGGTTCAGATTGTATCGGTAGATGGATATACGACATTCCGTTCAATACGCCGAAATAATAATGCAGAGCAGGTGATCGACTGGGATTTTACTTCAATCCTTCCTGCTGGTGGATTGCTTGATAGAGACAAAGTGGATGTTGTTACCCGTTATCGGGTAACATCCCAGAATGCTCATAGAGTAGATACGCAAGTCGGTAGGGAGTGGTTCTTCTACAACTCTACCGCCAATGTGTCACCGATATGGGATGAAGCCAATCCGTTAACTTGTCTCATACTTGTGCCCGAGATATACATCATGGGTACTTTTGTTGTAAACGGTACCGATCCACATGTCATTTCACAATGTACTCCAACAGATCTGGGACGCGTTGCTAACCACTACGCCCGTCGTTTCGGCTCTGGTGCATTTGAATATGCCAATGAATATCGTCCTGGTGTAAAGATTAGAAATATCTATCTGAAAGTACCGAAGTCCTACACGCTGAATAGGGTGGAGTATAGCAATCACCGTAACCATAGTTCGTTAGGTACAACCATGCCTTTCGAGGAAATAAATCATACAGATGTGACTTCACAGGGTGAATATAACATCTATAAGTATCAACTTGCAGACAACGAAAAGGCGCACTTCAATATTACAGTAAAAAATGCCTATGGAGCAGCTCTTAAAGTAAATGTATCTCCCACTTGTGCGTCGTCTGCTGTAGCAACTAATTATGATAAAATTTCATACTATGTCGATTACATTGACTATTACTATTATGCAGCAACGCAGCCAACAGTACCTAATAGCCTTGACATAGTAGCCGATCAATCGGCTGGCAGCAACGGAATCTACAGTGTTTCCGCCCTCAATGTTTACAACAGGCCTATCCTTTATACTAACAAACCTTCTATTGCGCTCGTCAATCAGTCAGGTGAGGTAGAGCTTGTGGGTAAAACGGGAGAGTGGAAGCTGCGTATCAGCAACCCATCGAGTGCAACGGCTCCCTATGTTTGGTTGGCATTGCCTACAACATCGGGGCTGACCATCGAAAAAGTAACTGATGCGGCAGGTACTGAAATGGCGTTTACAACTTATTCTGGTGGCAAGATGTATCGTTTGTCGGAAGCTGGTGTTCCAGTAGGTTCTGCGCTTGACTATACCATTCACTTTACCTATTCTGGTTGCTCTCCTATCGCTTTGAAGGCGATGGGGGGCTGGAACTGTAGTGCATATCCCCTTAGTTTGGATGAGTATGTTTGCAGTTCGCAGGTGATCGATCTCAAGCTCAAGCCACTGCCAGCTGCCATGGAGCTTACTGAGATAGCTGTTCCAGATCCTACAGCTGCTGCTACATTGTGTAGTACATTGGAATATATTTACAGCATTCAATCGACAGATAATGCGAACGTTTATAGTCCTACTTTCAGCATCTTCCCCGAAGAGGGATTGGTGGTGACACCGAATCAGGTACAGGTGGAATATCCTGCCGGTTCCGGTAATTGGGCTGCACTCAATGTGGTCAATAATTCCGTCAATCTGTTGCAGCATCCTGCATTGACTACCATAGGCTATCTCAAGGGCCTGAAAGAGGGGGAATCCAACGACAATCAACGTAAAATTTTGGTGAAGTTCTACATAAAGACCGAGTGTTCGTTCGTATCTGGCAAGAACTTCCGTGTAAGAGCTGACGGCCGTAATGCTTGTAATCAGAATGCCAAGGGATCGGGTCTTGCCATAAGTACGCCTCCAATTAGAATAAATGGAGCTATAGAGCCCTACACGACTTCTGCTTCTACGCAGCTTGTTACGACCACAACATCACAATCGGACTGTAAAGCTCCCAAAAGAGTAAAAGTGGTGCAAACGGTCGTAGGTGGAGAAACTACCCCCAAGGCATATTTGGAAATCACGCTGCCGTTGGGCTTTAAGTATGTGACGGGTTCTTATGCTCCGGACAATACGCATCCGGGAGGAGTCAATGCCTCACCTGCCGGAACGGAAGAAGTCACTTTGACCGCGAACGGTGAAGACAAGATTAAGATAAATGTCAAGGCCGGTCTGACGTCAGGTCAATCGTTTGCTTATACACTCGAAATGAAGGAAGACGATGATAATGTGCCGGCTTGTGGCAATCATACCATCGAAATTGTCAATGTTGAGGAGATTGAAGGTTTGTGGTGTGAAGGCGTTCAGTGTGCAGAAACTTTGGTCGTCACGGGTGCCAACAAGTTTGAATTTGAGCTTGATAAGCCTTACTTGGATATTACGGTTATTTCAGCAGTATCGACTTTCAGTGGTGGTAAGGAAAATCTTACAATTGAGTATAAGGTAAGCAATACATCGACCACCCAGCCTCTGAAACCGGGAGCGGTTGTAACGCTGTTCAGCGATAAGGATAACAATCAAGTCTTCTCCGGCGGAGATGTTGCTGTTGCAACACAGGAGTTGGTCGCAGAAATAACTAATACCACACCTCTTACGCAGATAATGAAGGTAAAAGGAGTGAGCTCTTCCCATACGGGCAATTTGGTTCTTACGATACTGCCCAAAGACGGTTGCTACTGTGAGATCAAATCCCCTATGGTCACGTTAAACCATCTTCCTTCGAATTACTGGATCGGAGGAACTGTAGGTAAGCCTAACGAATGGAAAGAGCCGAACAACTGGACCAATGACCAAGTTCCCGATGCGGCAGAGGATGTTGAATTCGCCACTGAGGTGAATAACCCGACTGATCCGAATAATCCGAAGTCGGGTCCTGCGAAGGAGAACCTGCATCTGGACGATATACACCAGAATGGCACAGCCGGTCGCGTTATCGGCAACCTGATCAATGACTCTGACAAAGATCTGGTAATCACAACGGGCAATCAATTGACGATCAACGGCGTGGTTGAGGATAACAATCCGAATGTCGGTACGATCGTCGTGAAGTCGTCGAAAGACAATCCTACGGGGACGTTGCTTTTCGCCAATCCGGGCAATAATCAAAATGTAGGGGGGACTGTCGAGTTTTACAATCAGGGATATGATTGTGCCGATTGTGGTATGTATCGCAGGAGCTGGCAGTATTTCGGTATCCCTGTCAATGAATCAGATTTTCCATATGATCATGTTGATGGAAACGCGACCGTCAACCAATGGGTTGAGCCTTTCAATGGCGATAAGTGGCGGCCTGCACCTTATGCACCTGATACAAAGCTTCAGAAATTCAAGGGCTATCAGATCACGAATGACGTGCAGGCACAGCCTACGGGAGTTTACAGCTTCAAGGGTACGCTTTGTGTGTGCGATGCCTTCCTGAACCTGACACGCACGTCCGGTGTCAACTACTCGGGCGCCAACTTGATCGGCAACTCATACACTGGAGCTATCGACATCAAGCAAGGTATTGTCTTCCCGCCGGAAGTCGAGCAGACGGTGTATCTGTTCAACACGGGAACACGCGACCAGTGGCGTAAGCTTAATGGAAGCACGGTTTCAGGCTATCGAGCCGGTCAGTACCTCTCTGTACCTAAGAATACAGCGGGTCAGGACAATCTTCCGGATCGTATTCCATCGATGCATTCCTTCTTGGTGAAGATGCAGAACGGAGCCTCTTGTACGTTGCAGATCTTGTACGATAAGCTGCTCAAGAACACGACTGTAAACAACGGTAATGGTACGCAGATCACATGGCGATCCGGCAACTCCGGATCGGCGAATATGCCGTCACTTGTGATGGATGTTCTTGGTAATGAGTCGGCCGACCGTTTGTGGATCTTTACCGATGGGGGTCTTTCGTTCGGATTCGACAACGGCTGGGATGGTCGCAAGCTGACTGAAAAAGGTTTGTCACAACTTTATGCGATGTCTGACATCGGTAATGATAAATTCCAGGTTGCAGGGGTTCCGGAGTTGAATAACCTGCTGATCGGCTTCGATGCGGATAAGGATGGTCAATACACGTTGGAGTTTGCTCTTTCGGATCATTTTGCGAAAGGCGGAGTTTTCCTTGAGGATCTTAGCCGTGGAGTTACACGGCGAGTAGTCGACGGCGGTTCGTATTCATTCGATGCCAAGCGAGGAGACTCCGGGGCTCGTTTCCGTCTCTCTTATGACGAAGAGTGGGTTGAATCGGCAGAGGTTTCTGTTTTGGTTGGTACGGCCGGGAAGCGAATCGTTATCACGAATAACAGTGAGCATGCCTGTCAGGCCAATGTTTATACAACTGACGGAAAACTTCTGATTCGATTGGACGTAAAACCCGGAAGTAAGTCTATGACGGAACCATTGGTCGATGGAGTCTACGTTGTCAGTCTGCAAAGTCCTGCCACGAGTAGCAATGTAAGGAAAGTTGTAGTCAAC","5.00","-49.61","240123","MKTSERILSYFFLLCAVFSLGSCEGLYAQVTFPNYSPTAASSIAVCSGEETLIIDFTVVQEDSNGIKVNVKLADGVEYVVGTAVVSVTQGNAVTVAETNVSNPNEPVFTVKSADGNNVVELGTIVKLTIKRRAVCTAWSNAINAAETGFVFKDKVTVTIGDHSDSKESNSYSVNYPNLTIKQPAPQVNKQIGETIVREFSITNGSQNPTQTVYLSIEYPDEAYLTGVGAMTLQAKLGASGTYADLTPTVTNGKVRIYTLSGSSLGPDHLLTNGEIIYLKETFKLKTCAPVTVYRVGWGCSIDSQCEIKTTAATITMAAGAANITGYSVTGPDYRSPTFSLCQPFELTIKFSNSGAGGSMGAAFNINTIGRNDYYRPRGFVLHEFIDVKVNGKPVTNFKTDGSELDLRFDGQFTEDPDGPGVGLDDVDGDGFYDDLPVGATITITVTVRLKCDQFTACNNAPNDLSDRGLILKTLYQTSCDRTSWIDPNTWFNLSSTHLYLSRESVQDASHMPTVIEKDTPFDLKIMTSYYSILSSYNNIWYANPNTRYVVEIVFPQGMTMPPKSDIEWTNIKNHPIDGSLVFTPPINLPDANITTSGNTMTIVSPSQERGFVTLHGVKYDCTNNHEMVVEYKIREVFNYLHFPDCLCPVGPIMCNTAKRYVLGCDPPCGRGAETSVPKIERADNSLGWTDYTMRTRQSRSNISAYDLAKALYMDEVNITATSIQHGTASSLGARFVLATGVDRVETLTPLSADIKIFRDGVQIVSVDGYTTFRSIRRNNNAEQVIDWDFTSILPAGGLLDRDKVDVVTRYRVTSQNAHRVDTQVGREWFFYNSTANVSPIWDEANPLTCLILVPEIYIMGTFVVNGTDPHVISQCTPTDLGRVANHYARRFGSGAFEYANEYRPGVKIRNIYLKVPKSYTLNRVEYSNHRNHSSLGTTMPFEEINHTDVTSQGEYNIYKYQLADNEKAHFNITVKNAYGAALKVNVSPTCASSAVATNYDKISYYVDYIDYYYYAATQPTVPNSLDIVADQSAGSNGIYSVSALNVYNRPILYTNKPSIALVNQSGEVELVGKTGEWKLRISNPSSATAPYVWLALPTTSGLTIEKVTDAAGTEMAFTTYSGGKMYRLSEAGVPVGSALDYTIHFTYSGCSPIALKAMGGWNCSAYPLSLDEYVCSSQVIDLKLKPLPAAMELTEIAVPDPTAAATLCSTLEYIYSIQSTDNANVYSPTFSIFPEEGLVVTPNQVQVEYPAGSGNWAALNVVNNSVNLLQHPALTTIGYLKGLKEGESNDNQRKILVKFYIKTECSFVSGKNFRVRADGRNACNQNAKGSGLAISTPPIRINGAIEPYTTSASTQLVTTTTSQSDCKAPKRVKVVQTVVGGETTPKAYLEITLPLGFKYVTGSYAPDNTHPGGVNASPAGTEEVTLTANGEDKIKINVKAGLTSGQSFAYTLEMKEDDDNVPACGNHTIEIVNVEEIEGLWCEGVQCAETLVVTGANKFEFELDKPYLDITVISAVSTFSGGKENLTIEYKVSNTSTTQPLKPGAVVTLFSDKDNNQVFSGGDVAVATQELVAEITNTTPLTQIMKVKGVSSSHTGNLVLTILPKDGCYCEIKSPMVTLNHLPSNYWIGGTVGKPNEWKEPNNWTNDQVPDAAEDVEFATEVNNPTDPNNPKSGPAKENLHLDDIHQNGTAGRVIGNLINDSDKDLVITTGNQLTINGVVEDNNPNVGTIVVKSSKDNPTGTLLFANPGNNQNVGGTVEFYNQGYDCADCGMYRRSWQYFGIPVNESDFPYDHVDGNATVNQWVEPFNGDKWRPAPYAPDTKLQKFKGYQITNDVQAQPTGVYSFKGTLCVCDAFLNLTRTSGVNYSGANLIGNSYTGAIDIKQGIVFPPEVEQTVYLFNTGTRDQWRKLNGSTVSGYRAGQYLSVPKNTAGQDNLPDRIPSMHSFLVKMQNGASCTLQILYDKLLKNTTVNNGNGTQITWRSGNSGSANMPSLVMDVLGNESADRLWIFTDGGLSFGFDNGWDGRKLTEKGLSQLYAMSDIGNDKFQVAGVPELNNLLIGFDADKDGQYTLEFALSDHFAKGGVFLEDLSRGVTRRVVDGGSYSFDAKRGDSGARFRLSYDEEWVESAEVSVLVGTAGKRIVITNNSEHACQANVYTTDGKLLIRLDVKPGSKSMTEPLVDGVYVVSLQSPATSSNVRKVVVN","209551 216180","TIGR ID: PG0183","conserved hypothetical protein; Rsa/SAP related","Extracellular, Periplasm","No significant hit found in gapped BLAST with E value less than e-04.Subsequently sequence similarity was found to ","
noIPR
unintegrated
unintegrated
PS51257\"[1-23]TPROKAR_LIPOPROTEIN


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Wed Jun 13 07:57:17 MDT 2001","","Wed Jun 13 07:57:17 MDT 2001","Wed Jun 13 07:57:17 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Jun 13 07:57:17 MDT 2001","Wed Jun 13 07:57:17 MDT 2001","","","Tue Jul 6 12:54:46 2004","Tue Jul 6 12:54:46 2004","Fri Feb 23 15:38:12 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","PG0168 is paralogous to PG0167, a hypothetical. Residues 165-2203 are 78% similar to residues 684-1246 of PG0167.","Wed Jun 13 08:01:52 MDT 2001","Fri Feb 23 15:38:12 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Jun 13 07:57:17 MDT 2001","34540040","","","","","","1","","4","PG0183" "PG0169","216542","217624","1083","ATGGCATACCAATCCAAGAATACCGATGAGCATGTAACATTTGCAGACGCACTCCTTTCAAAGCGTTATCGCAAAGCACAAAACGACTTCCTCAATCAGGTTGACAGGCTTATCGATTGGCGTCCGATCAGGACGCTGATCAACAAGAAATACACCAAGCGACAAAATGCCATCGGCGCCCCGGCTTATGACGTGATTCTCTTATTCAAGATGTTGCTTTTGGAGACATGGTACAACCTCAGTGATTGTGCTTTGGAGGAGCGCATCAATGATTCAATCACCTTTTCCCGATTCTTGGGGCTGAAGATGGAAGAGGTTTCTCCCGACCACAGTACCATCAGTCGATTTCGTTCGGCACTGACAGAGTTGGGTCTCATGGACAAACTATTGGCGCAGTTTAACAAACAACTTTCCCGCCATCACATTTCGGTCAGGGAAGGGGTGCTTGTCGATGCAAGCCTTGTGGAGACGCCGCATAAACCCAACGGAAGCATTACGATTGAAGTCGCAGACGACAGAGAAGACAATCGGAGCGAGGAGGAAAAAGAGGCAGAGGAGGATTATCAAAAACAGGTTGTCCGTCAGCGTAAAGGGACGGATGAAGAAGCCCGTTGGGTTTACAAACAAAAGCGTTATCACTACGGATACAAAAAGCATTGTCTGACCAATGTTCAAGGCATTGTTCAAAAGGTGATAACGACTGCAGCGAACCGCAGTGACACGAAGGAGTTTATTGCGCTATTGCAGGGTGCAAACATACCTCAAGGCTCAGCCGTCTTGGCGGACAAAGGATATGCTTGCGGGGAAAATCGTTCCTACCTGCAAACCCATCACCTTCAAGACGGCATCATGCACAAGGCACAACGCAACAGGGCATTGACCGAGGAAGAGAAGCAACGAAACAAAGCAATCAGTCGGATACGGAGCACCATCGAACGCACCTTTGGCAGTATTCGCCGGTGGTTTCATGGCGGACGATGTCGATACCGGGGACTTGCCAAGACCCATACTCAAAACATTCTTGAAAGCATCGCCTTTAATTTATACAGAACCCCGGGGATAATTATGTCCTCATTTGTAGGA","10.20","14.72","41742","MAYQSKNTDEHVTFADALLSKRYRKAQNDFLNQVDRLIDWRPIRTLINKKYTKRQNAIGAPAYDVILLFKMLLLETWYNLSDCALEERINDSITFSRFLGLKMEEVSPDHSTISRFRSALTELGLMDKLLAQFNKQLSRHHISVREGVLVDASLVETPHKPNGSITIEVADDREDNRSEEEKEAEEDYQKQVVRQRKGTDEEARWVYKQKRYHYGYKKHCLTNVQGIVQKVITTAANRSDTKEFIALLQGANIPQGSAVLADKGYACGENRSYLQTHHLQDGIMHKAQRNRALTEEEKQRNKAISRIRSTIERTFGSIRRWFHGGRCRYRGLAKTHTQNILESIAFNLYRTPGIIMSSFVG","216542 217624","Member of the IS5 family of elements. A full-length ISPg1 element.TIGR ID: PG0184","ISPg1 transposase (IS1106-related transposase)","Cytoplasm","PG0169 is equivalent to the previously sequenced AJ130872 in GenBANK. See also AB015879. Residues 31-350 are 34% similar to a predicted IS1106-related transposase sequence from N.meningiditis (AE002488). ","
InterPro
IPR002559
Domain
Transposase, IS4-like
PF01609\"[147-348]TTransposase_11


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 303-361 are identical to a (TRANSPOSASE ORF7 INSERTION SEQUENCE IS1126-LIKE GENE) protein domain (PD187845) which is seen in Q9ZA61_PORGI.Residues 157-302 are 87% similar to a (TRANSPOSASE PLASMID PROTEIN ELEMENT) protein domain (PD004652) which is seen in Q9ZA61_PORGI.Residues 110-156 are identical to a (TRANSPOSASE ORF7 INSERTION SEQUENCE IS1126-LIKE GENE) protein domain (PD187846) which is seen in Q9ZA61_PORGI.Residues 12-109 are identical to a (TRANSPOSASE PROTEIN INSERTION ELEMENT) protein domain (PD007264) which is seen in Q9ZAD0_PORGI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Tue Jul 13 14:14:56 2004","Mon Feb 12 15:55:00 MST 2001","Tue Jan 2 15:48:08 MST 2001","Tue Jan 2 15:48:08 MST 2001","","Mon Feb 12 15:55:00 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG0169 is virtually identical to PG1267, PG1662, PG1050, PG1062, PG0740, PG0918, PG1422, PG0420, PG0499, and PG1099, all ISPg1 transposases.Partial similarities exist to PG0732, PG0842, PG1607, PG0731, PG0884, PG1184, PG1087, PG0763, PG1755, PG0686, PG0756, PG1798, PG1230, PG1919, PG0044, PG0689, PG1215, PG1665, PG0839, PG1895, PG0883, PG11231, PG0730, PG1159 and PG1608. ","Mon Apr 2 12:35:13 MDT 2001","Mon Feb 12 15:55:00 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 147 to 348 (E-value = 2.2e-40) place PG0169 in the Transposase_11 family which is described as Transposase DDE domain (PF01609)","Mon Apr 2 12:35:13 MDT 2001","34540041","","Hanley,S.A., Aduse-Opoku,J. and Curtis,M.A.A 55-kilodalton immunodominant antigen of Porphyromonas gingivalisW50 has arisen via horizontal gene transferInfect. Immun. 67 (3), 1157-1171 (1999)Maley,J. and Roberts,I.S.Characterisation of IS1126 from Porphyromonas gingivalis W83: a new member of the IS4 family of insertion sequence elementsMicrobiol. Lett. 123 (1-2), 219-224 (1994)Shibata,Y., Hayakawa,M., Takiguchi,H., Shiroza,T. and Abiko,Y.Determination and characterization of the hemagglutinin-associatedshort motifs found in Porphyromonas gingivalis multiple geneproducts. J. Biol. Chem. 274 (8), 5012-5020 (1999)","Knight,A.I., Ni,H., Cartwright,K.A. and McFadden,J.J.Identification and characterization of a novel insertion sequence, IS1106, downstream of the porA gene in B15 Neisseria meningitidis.Mol. Microbiol. 6 (11), 1565-1573 (1992)","Mon Feb 12 15:55:00 MST 2001","Mon Feb 12 15:55:00 MST 2001","1","","4","PG0184" "PG0169.1","217652","217939","288","GTGCAAGCAGCTCCTCAAGGGGGGATTTACAACTACTTTCACTCCTTACTGCCACCCCTTTCACTCGCTCCTTTTATGCCAAGAACTCCTCTTCCCTCCACCTCCTTATTTTGCAAAGGTCTCCTTATGGGAATCCCTCCGAATCATAGTTCCCGAGGAGAAAAGAACATTACTCATTGCCGGGGATTAATACCTGCGATTTATAGCGAGTCTGCCGGCATTACAATCTTCCTCTTTAGGATCTTACATCACATGTCACGTTGCAGAAATTTCTGCATTTGTGGTTTC","","","10614","VQAAPQGGIYNYFHSLLPPLSLAPFMPRTPLPSTSLFCKGLLMGIPPNHSSRGEKNITHCRGLIPAIYSESAGITIFLFRILHHMSRCRNFCICGF","","NO TIGR ID corresponds to this gene.","hypothetical protein (ISPg1-related)","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
noIPR
unintegrated
unintegrated
tmhmm\"[64-82]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Fri Feb 23 15:52:57 MST 2001","","Fri Feb 23 15:44:21 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","PG0169.1 is similar to PG1086, PG1229, PG0838, PG0885, PG0755.1, PG1895.1, PG1100, PG0685, ISPg1-related orfs.","Fri Feb 23 15:52:57 MST 2001","Wed Apr 25 14:30:06 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Apr 25 14:30:06 MDT 2001","","","","","","","1","","4","" "PG0169.2","217932","218258","327","GTGGTTTCTAAAAACGTGGCGCGTAAACTTTTTCATTTTGGCGCGAGAAGTAAAAAAATCTCGAGCCAAAACGAAAAAAATCCTGCGCCACTTTATTCCATAAAATCGAACCGAAATCAAAGTGTTTTAGGCTCGTACTCCGGAGACAGTAGTTCACAAGCATACAGGAGAATAGCATTGATGTGGAATCAAGGTATCTCAATATTGAGAGCGTTCGATCGGTCAAAAGAAACACTCTATCTTCCAAAATTCAAATTTACATCGGTTTATTGCTGCTCCTTTTGCAAAGTGGATTTGACAAATCGTATGGTGAGCAAATTGCTTAGA","","","12447","VVSKNVARKLFHFGARSKKISSQNEKNPAPLYSIKSNRNQSVLGSYSGDSSSQAYRRIALMWNQGISILRAFDRSKETLYLPKFKFTSVYCCSFCKVDLTNRMVSKLLR","","NO TIGR ID corresponds to this gene.","hypothetical protein","Periplasm","No hit found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Fri Feb 23 15:58:04 MST 2001","","Fri Feb 23 15:58:04 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","PG0169.2 is paralogous to PG0326, PG1166.1, and PG1496.2 plus some very weak similarities. Residues 2-50 are 69% similar to PG0326, a hypothetical protein.","Fri Feb 23 16:02:07 MST 2001","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Fri Feb 23 15:58:04 MST 2001","","","","","","","1","","4","" "PG0170","218469","221519","3051","ATGAAAAGAATGACGCTATTCTTCCTTTGCTTGCTGACGAGCATTGGGTGGGCTATGGCCCAGAATAGAACCGTGAAGGGTACAGTTATCTCCTCCGAGGATAATGAGCCCCTGATCGGCGCGAATGTCGTGGTTGTCGGAAACACCACTATCGGTGCTGCAACCGACTTGGATGGCAACTTCACGCTTAGCGTGCCTGCCAATGCCAAAATGTTGAGAGTGTCCTATTCCGGTATGACTACCAAAGAGGTCGCCATCGCTAATGTGATGAAGATCGTACTGGATCCGGACTCTAAGGTTCTGGAGCAGGTAGTTGTATTGGGTTACGGTACGGGACAGAAACTCAGCACTGTTTCCGGTTCTGTGGCCAAAGTGTCCAGCGAAAAGCTCGCGGAAAAGCCCGTTGCCAATATCATGGATGCCCTCCAAGGTCAGGTAGCCGGTATGCAGGTTATGACTACATCCGGTGACCCTACTGCCGTCGCTTCTGTGGAGATCCATGGTACAGGGTCGTTGGGGGCAAGCTCTGCACCATTGTATATCGTGGATGGTATGCAAACTTCTTTGGATGTTGTGGCTACGATGAATCCGAATGATTTTGAATCTATGTCCGTTTTGAAAGATGCTTCTGCAACATCTATTTATGGAGCTCGTGCTGCAAACGGAGTCGTTTTCATTCAAACGAAGAAAGGTAAAATGAGCGAGAGAGGTCGTATTACCTTTAATGCCAGTTACGGGATTTCTCAAATCCTGAATACTAAGCCCCTTGATAATATGATGACTGGAGATGAATTGCTGGATTTTCAGGTGAAGGCAGGTTTTTGGGGGAACAATCAAACCGTTCAGAAGGTTAAAGATATGATCCTTGCCGGAGCTGAAGATtTGTATGGCAATTATGAtTCTTTGAAAGATGAGTATGGTAAGACATTGTTCCCAGTGGATTTTAATCATGATGCAGACTGGCTCAAGGCTTTGTTTAAAACAGCACCCACCAGTCAAGGTGATATTTCTTTCTCCGGAGGGTCTCAGGGAACTTCATATTATGCCTCTATAGGCTACTTCGATCAGGAAGGTATGGCTCGTGAACCGGCAAATTTTAAGCGCTATAGTGGCCGGCTCAACTTCGAAAGTCGTATCAATGAATGGCTGAAAGTTGGTGCAAATTTGTCTGGTGCGATAGCGAATAGACGATCTGCCGACTATTTTGGAAAGTATTATATGGGGTCAGGTACTTTCGGTGTGTTAACGATGCCTCGTTATTATAACCCTTTTGATGTGAATGGGGATTTAGCAGATGTCTATTACATGTATGGAGCTACCAGACCTTCTATGACAGAACCGTACTTCGCAAAAATGAGACCGTTCAGTTCCGAATCACATCAGGCCAATGTAAATGGTTTCGCCCAGATTACTCCGATCAAAGGCCTTACTTTAAAGGCACAGGCTGGTGTTGATATTACTAATACTCGCACTTCTTCTAAGAGAATGCCCAATAATCCGTATGATTCTACTCCTCTTGGGGAAAGAAGAGAAAGAGCTTATCGAGATGTTAGCAAGTCTTTTACAAATACGGCTGAATATAAGTTTTCAATTGATGAAAAACATGATCTTACAGCATTGATGGGGCATGAATATATTGAATATGAAGGGGATGTTATTGGGGCATCTTCTAAAGGATTTGAAAGTGATAAGTTGATGTTACTGAGCCAGGGAAAAACCGGAAATAGTTTGTCTTTGCCTGAACACAGAGTCGCTGAATATGCCTATTTGTCTTTCTTTAGTCGTTTTAATTACGGTTTTGACAAATGGATGTATATAGATTTCTCTGTTCGTAATGACCAATCCTCTCGATTCGGATCCAATAATAGAAGCGCGTGGTTCTATTCTGTCGGTGGAATGTTTGACATATATAATAAATTCATTCAAGAAAGTAATTGGCTCAGTGATCTTCGACTGAAAATGAGTTATGGTACAACGGGTAACTCGGAGATTGGTAATTACAACCACCAAGCACTCGTTACTGTGAACAATTATACTGAAGATGCTATGGGGCTTAGCATTTCTACAGCAGGCAATCCCGACCTCTCGTGGGAAAAGCAGTCTCAGTTCAACTTCGGTTTGGCTGCAGGGGCTTTCAATAATCGCTTATCTGCAGAGGTAGATTTCTATGTCCGCACTACGAATGATATGTTGATTGATGTCCCGATGCCTTATATCAGTGGTTTCTTCTCACAGTATCAGAATGTAGGCTCTATGAAAAATACGGGTGTAGACCTTTCTCTTAAGGGGACGATCTACCAAAATAAGGACTGGAATGTATATGCTTCTGCGAATTTCAACTACAATAGACAGGAAATAACAAAGCTTTTCTTCGGTCTCAATAAGTACATGTTGCCTAATACCGGTACTATATGGGAAATTGGGTACCCCAATTCGTTCTATATGGCTGAATATGCTGGAATCGACAAAAAAACCGGTAAGCAGTTGTGGTATGTTCCTGGTCAAGTCGATGCGGATGGTAATAAAGTTACAACAAGCCAGTACTCAGCTGACTTGGAGACACGAATTGATAAGTCTGTTACTCCTCCTATTACAGGTGGTTTCTCCTTAGGTGCTTCTTGGAAAGGACTTTCTTTAGATGCTGATTTTGCCTACATCGTTGGTAAATGGATGATCAATAATGACCGTTACTTTACAGAGAATGsAGGTGGATTGATGCAATTAAATAAAGATAAAATGCTATTGAATGCCTGGACAGAGGATAATAAAGAAACAGATGTTCCAAAATTGGGACAGTCTCCTCAGTTTGATACGCATTTGTTGGAGAATGCTTCTTTCCTGCGTTTGAAGAATCTCAAACTCACCTATGTACTCCCCAATAGTCTTTTTGCTGGGCAGAATGTGATTGGTGGAGCTCGTGTCTATTTGATGGCGCGCAATCTGTTAACTGTTACGAAGTATAAAGGCTTTGACCCTGAAGCAGGGGGGAATGTGGGAAAAAATCAATATCCTAATTCTAAGCAGTACGTTGCGGGTATTCAGTTGTCTTTC","6.40","-3.05","252010","MKRMTLFFLCLLTSIGWAMAQNRTVKGTVISSEDNEPLIGANVVVVGNTTIGAATDLDGNFTLSVPANAKMLRVSYSGMTTKEVAIANVMKIVLDPDSKVLEQVVVLGYGTGQKLSTVSGSVAKVSSEKLAEKPVANIMDALQGQVAGMQVMTTSGDPTAVASVEIHGTGSLGASSAPLYIVDGMQTSLDVVATMNPNDFESMSVLKDASATSIYGARAANGVVFIQTKKGKMSERGRITFNASYGISQILNTKPLDNMMTGDELLDFQVKAGFWGNNQTVQKVKDMILAGAEDLYGNYDSLKDEYGKTLFPVDFNHDADWLKALFKTAPTSQGDISFSGGSQGTSYYASIGYFDQEGMAREPANFKRYSGRLNFESRINEWLKVGANLSGAIANRRSADYFGKYYMGSGTFGVLTMPRYYNPFDVNGDLADVYYMYGATRPSMTEPYFAKMRPFSSESHQANVNGFAQITPIKGLTLKAQAGVDITNTRTSSKRMPNNPYDSTPLGERRERAYRDVSKSFTNTAEYKFSIDEKHDLTALMGHEYIEYEGDVIGASSKGFESDKLMLLSQGKTGNSLSLPEHRVAEYAYLSFFSRFNYGFDKWMYIDFSVRNDQSSRFGSNNRSAWFYSVGGMFDIYNKFIQESNWLSDLRLKMSYGTTGNSEIGNYNHQALVTVNNYTEDAMGLSISTAGNPDLSWEKQSQFNFGLAAGAFNNRLSAEVDFYVRTTNDMLIDVPMPYISGFFSQYQNVGSMKNTGVDLSLKGTIYQNKDWNVYASANFNYNRQEITKLFFGLNKYMLPNTGTIWEIGYPNSFYMAEYAGIDKKTGKQLWYVPGQVDADGNKVTTSQYSADLETRIDKSVTPPITGGFSLGASWKGLSLDADFAYIVGKWMINNDRYFTENXGGLMQLNKDKMLLNAWTEDNKETDVPKLGQSPQFDTHLLENASFLRLKNLKLTYVLPNSLFAGQNVIGGARVYLMARNLLTVTKYKGFDPEAGGNVGKNQYPNSKQYVAGIQLSF","218469 221519","Ross, et al.(2001) select PG0170 as one of fifteen vaccine candidate antigens, based on in vitro and in vivo laboratory studies of 120 candidates screened by bioinformatics techniques from the whole W50 genome.RagA and RagB (PG0170 & PG0171) form a temperature-regulated operon; see Bonass, 2000. RagA is a homolog of tonB-linked outer membrane receptors and ragB appears to be an immunodominant antigen.Veith et al. 2002 identified this protein by two-dimensional gel electrophoresis and peptide mass fingerprinting of outer membranes prepared from strain W50. They present the following results: Based on signal peptide sequence comparisons to PG0626, PG0627, PG1592, PG1840, PG0836, PG0023, PG1893, the mature N-terminus of this protein is predicted to be pyroglutamate.TIGR ID: PG0185","tonB-dependent outer membrane receptor","Outer membrane, Extracellular","PG0170 is essentially identical to a previously sequenced P.gingivalis, strain W50, gene in GenBank, CAA10226. This sequence is similar to BT0206, a predicted outer membrane protein, probably involved in nutrient binding.The ~150 residues from 100-250 show similarity to many putative TonB-linked domains from a variety of organisms. ","
InterPro
IPR000531
Domain
TonB-dependent receptor
PF00593\"[627-1017]TTonB_dep_Rec
InterPro
IPR012910
Domain
TonB-dependent receptor, plug
PF07715\"[114-223]TPlug
noIPR
unintegrated
unintegrated
G3DSA:2.170.130.10\"[94-228]Tno description
G3DSA:2.40.170.20\"[331-886]Tno description
signalp\"[1-20]?signal-peptide
tmhmm\"[5-25]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 159-298 are 99% similar to a (RECEPTOR ANTIGEN RAGA RECEPTOR) protein domain (PD217909) which is seen in Q9ZA60_PORGI.Residues 18-158 are identical to a (OUTER MEMBRANE RECEPTOR PROTEIN) protein domain (PD099525) which is seen in Q9ZA60_PORGI.Residues 162-232 are 48% similar to a (RECEPTOR PROTEIN OUTER MEMBRANE PRECURSOR SIGNAL TONB) protein domain (PD000492) which is seen in Q45780_BACTN.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","Tue Feb 6 13:13:03 MST 2001","Tue Feb 6 13:13:03 MST 2001","","Thu Feb 7 15:17:12 2002","Wed Apr 4 09:06:58 MDT 2001","Thu Nov 20 21:11:58 2003","Wed Dec 13 17:47:15 MST 2000","","Mon Feb 12 17:06:02 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1-249 show 26% similarity to PG0601, and residues 4-173 are 28% similar to PG1242, both predicted ton-B linked outer membrane receptors.","Mon Feb 12 17:30:06 MST 2001","Tue Jul 17 14:45:25 2007","No significant hits to the PDB database (E-value < E-10).","","","Residues 116 to 874 (E-value = 1e-05) place PG0170 in the TonB_dep_Rec family which is described as TonB dependent receptor (PF00593)","Wed Apr 4 09:06:58 MDT 2001","34540042","Thu Feb 7 17:05:19 2002","Veith,P., Talbo,G., Slakeski,N., Dashper,S., Moore,C.,Paolini,R., Reynolds,E., Major outer membrane proteins and proteolytic processing of RgpA, and Kgp of Porphyromonas gingivalis W50, Biochem J. 2002 (in press).Bonass WA, Marsh PD, Percival RS, Aduse-Opoku J, Hanley SA, Devine Nagano K, Murakami Y, Nishikawa K, Sakakibara J, Shimozato K, Yoshimura F., Characterization of RagA and RagB in Porphyromonas gingivalis: study using gene-deletion mutants., J Med Microbiol. 2007 Nov;56(Pt 11):1536-48., PMID: 17965357Imai M, Murakami Y, Nagano K, Nakamura H, Yoshimura F., Major outer membrane proteins from Porphyromonas gingivalis: strain variation, distribution, and clinical significance in periradicular lesions., Eur J Oral Sci. 2005 Oct;113(5):391-9., PMID: 16202026Ross BC, Czajkowski L, Hocking D, Margetts M, Webb E, Rothel L, Patterson M, Agius C, Camuglia S, Reynolds E, Littlejohn T, Gaeta B, Ng A, Kuczek ES, Mattick JS, Gearing D, Barr IG, Identification of vaccine candidate antigens from a genomic analysis of Porphyromonas gingivalis, Vaccine 2001 Jul 20;19(30): 4135-42, PMID: 11457538.DA, Curtis MA, Identification of ragAB as a temperature-regulated operon of Porphyromonas gingivalis W50 using differential display of randomly primed RNA, Infect Immun 2000 Jul;68(7):4012-7, PubMed: 10858216.Hanley SA, Aduse-Opoku J, Curtis MA, A 55-kilodalton immunodominant antigen of Porphyromonas gingivalis W50 has arisen via horizontal gene transfer, Infect Immun 1999 Mar;67(3):1157-71, PubMed: 10024556.Curtis MA, Hanley SA, Aduse-Opoku J.The rag locus of Porphyromonas gingivalis: a novel pathogenicity island. J Periodontal Res. 1999 Oct;34(7):400-5.PMID: 10685368.","","Mon Jul 7 13:37:43 2008","","1","","4","PG0185" "PG0171","221552","223054","1503","ATGAAAAAAATAATTTATTGGGTTGCGACAGTTTTCTTAGCAGCGAGCGTATCCTCTTGCGAGCTTGACCGCGACCCCGAAGGAAAAGATTTCCAACAGCCATATACTTCTTTCGTGCAGACGAAACAAAACAGAGATGGTCTTTACGCACTTTTGCGTAATACTGAAAATCCACGAATGCATTTTTATCAGGAACTTCAATCCGATATGTATTGCACTACCATTACTGATGGTAACTCCTTAGCTCCGTTCGTGAATTGGGATTTAGGCATACTTAACGACCATGGACGTGCTGATGAGGACGAAGTCTCCGGTATAGCTGGCTACTATTTCGTATACAATCGACTAAATCAGCAAGCGAATGCTTTTGTTAACAATACGGAAGCTGCGTTGCAGAATCAAGTGTATAAAAATTCCACCGAGATCGCCAATGCTAAGAGCTTTTTGGCGGAAGGAAAAGTTTTACAAGCATTGGCTATTTGGCGACTGATGGATCGTTTTAGCTTCCATGAAAGCGTGACAGAAGTTAATTCCGGTGCGAAAGATCTTGGCGTTATTCTGTTGAAAGAATATAATCCTGGTTATATCGGTCCCCGTGCAACGAAGGCACAATGTTATGATTACATTTTGTCACGTTTGTCTGAGGCTATTGAAGTTTTGCCCGAAAACAGGGAAAGCGTTCTTTATGTGAGCCGTGATTACGCCTATGCCCTCCGAGCAAGAATTTACCTCGCGTTGGGTGAATATGGAAAAGCTGCAGCAGATGCTAAGATGGTTGTTGATAAGTATCCTTTGATTGGTGCAGCAGATGCTTCTGAGTTTGAGAATATTTATCGATCAGATGCTAATAATCCCGAAATTATTTTTCGTGGTTTTGCTTCTGCGACTCTTGGCTCGTTTACTGCTACGACACTAAATGGTGCTGCGCCAGCAGGTAAGGATATAAAATATAATCCGAGCGCAGTCCCTTTCCAATGGGTAGTGGATCTTTATGAAAACGAAGATTTCCGCAAATCCGTATATATCGCGAAAGTTGTGAAAAAGGATAAGGGGTATTTAGTAAATAAATTCCTTGAGGACAAGGCTTATCGTGATGTTCAGGATAAGCCAAACCTTAAAGTCGGAGCTCGTTATTTTAGCGTTGCTGAGGTCTACTTAATTTTGGTAGAGTCTGCTCTTCAGACTGGAGATACCCCAACAGCCGAAAAATATCTCAAGGCTTTGAGTAAAGCTCGTGGAGCAGAAGTTTCAGTCGTTAATATGGAAGCACTGCAAGCAGAGCGTACGCGTGAGCTTATAGGTGAGGGTAGTCGTTTGCGTGATATGGTCCGCTGGAGTATCCCTAATAATCATGATGCTTTTGAGACTCAGCCTGGTTTAGAAGGTTTTGCAAATACTACTCCTTTGAAAGCTCAAGCTCCTGTAGGCTTTTATGCATATACTTGGGAGTTCCCACAGCGAGATCGACAAACTAATCCGCAGTTAATAAAGAACTGGCCGATA","5.40","-6.13","56459","MKKIIYWVATVFLAASVSSCELDRDPEGKDFQQPYTSFVQTKQNRDGLYALLRNTENPRMHFYQELQSDMYCTTITDGNSLAPFVNWDLGILNDHGRADEDEVSGIAGYYFVYNRLNQQANAFVNNTEAALQNQVYKNSTEIANAKSFLAEGKVLQALAIWRLMDRFSFHESVTEVNSGAKDLGVILLKEYNPGYIGPRATKAQCYDYILSRLSEAIEVLPENRESVLYVSRDYAYALRARIYLALGEYGKAAADAKMVVDKYPLIGAADASEFENIYRSDANNPEIIFRGFASATLGSFTATTLNGAAPAGKDIKYNPSAVPFQWVVDLYENEDFRKSVYIAKVVKKDKGYLVNKFLEDKAYRDVQDKPNLKVGARYFSVAEVYLILVESALQTGDTPTAEKYLKALSKARGAEVSVVNMEALQAERTRELIGEGSRLRDMVRWSIPNNHDAFETQPGLEGFANTTPLKAQAPVGFYAYTWEFPQRDRQTNPQLIKNWPI","221552 223054","RagA and RagB (PG0170 & PG0171) form a temperature-regulated operon; see Bonass (2000). RagA is a homolog of tonB-linked outer membrane receptors and ragB, according to Hanley et al. (1999) appears to be an immunodominant antigen.Veith et al. (2002) identified this protein by two-dimensional gel electrophoresis and peptide mass fingerprinting of outer membranes prepared from strain W50. This protein contains a putative lipoprotein signal sequence.TIGR ID: PG0186. Reported by Chen et al., 2004, to be highly divergent in ATCC 33277.","receptor antigen B","Outer membrane, Cytoplasm","PG0171 is equivalent to the previously sequenced AJ130872, a predicted receptor antigen B in P.gingivalis, strain W50. No other similarities in gapped BLAST.","
InterPro
IPR012944
Domain
RagB/SusD
PF07980\"[285-499]TSusD_RagB
noIPR
unintegrated
unintegrated
PS51257\"[1-20]TPROKAR_LIPOPROTEIN
SSF48452\"[195-432]TSSF48452


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Tue Feb 22 13:47:48 2005","Fri Feb 23 16:09:40 MST 2001","Wed Apr 25 15:12:36 MDT 2001","Fri Feb 23 16:09:40 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Jul 7 13:45:50 2008","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Apr 25 15:12:36 MDT 2001","34540043","Thu Feb 7 17:04:27 2002","Bonass WA, Marsh PD, Percival RS, Aduse-Opoku J, Hanley SA, Devine Nagano K, Murakami Y, Nishikawa K, Sakakibara J, Shimozato K, Yoshimura F., Characterization of RagA and RagB in Porphyromonas gingivalis: study using gene-deletion mutants., J Med Microbiol. 2007 Nov;56(Pt 11):1536-48., PMID: 17965357Imai M, Murakami Y, Nagano K, Nakamura H, Yoshimura F., Major outer membrane proteins from Porphyromonas gingivalis: strain variation, distribution, and clinical significance in periradicular lesions., Eur J Oral Sci. 2005 Oct;113(5):391-9., PMID: 16202026Veith,P., Talbo,G., Slakeski,N., Dashper,S., Moore,C.,Paolini,R., Reynolds,E., Major outer membrane proteins and proteolytic processing of RgpA, and Kgp of Porphyromonas gingivalis W50, Biochem J. 2002 (in press).Hanley,S.A., Aduse-Opoku,J. and Curtis,M.A.A 55-kilodalton immunodominant antigen of Porphyromonas gingivalis W50 has arisen via horizontal gene transferInfect. Immun. 67 (3), 1157-1171 (1999).PubMed: 10024556Curtis MA, Hanley SA, Aduse-Opoku J.The rag locus of Porphyromonas gingivalis: a novel pathogenicity island.J Periodontal Res. 1999 Oct;34(7):400-5.PMID: 10685368Chen T, Hosogi Y, Nishikawa K, Abbey K, Fleischmann RD, Walling J, Duncan MJ.Comparative whole-genome analysis of virulent and avirulent strains of Porphyromonas gingivalis.J Bacteriol. 2004 Aug;186(16):5473-9.PMID: 15292149","","Wed Jul 9 18:20:16 2008","","1","","4","PG0186" "PG0172","224074","225441","1368","ATGTGCAAGAAACATTTCATCCGATATCTCTTTTGGATTTTTATCTCCTTTTGCTCAGGTATAGCTTTGGTCTCTTGTAAGGAGTCCAAGTTAGATCTCGAAGACGTGAATGTGGTTGATCTGCAAATCCACCGATTCTACCTTTCTACTAAGAAGAATCCGGATTTAGAAAAAGTGTTTTTCTCTATCGATCATGCAAAAGGGACAATTGTTAATAAGAAATATATGCCTTATGGCACGGTTTTAGATTCTGTCCTAATGAATCTCGTTACGGATCTCTCTGCAAAAAAGTTGCAAGTAGCGGTTAATGATGGGGAGTATAAAGATTGGCATAATAAAGATTCGTTGTGGTTGCGCGATTGTCATACCTTGCATTTAATGGTTTTCGACGAAAGTGGCGAGAAAACGAAAAAGTATACTGTTACCCTCAATCGTTATGATTATCAACCGACTACGTTTGTTTGGCATATGCTCGATGGAGTAGCTTTACCGGATATCAATGCTTCTTTTGTCGATGTTGTAACACATGCTGACAGGGTTTATTTGGTAGCAGCCACAGGTAATAAGACGCTGTTGTATTCATCTGACAGGAAAAATCCTGTTCATTGGACTTTACTATCGTCTTCCGGCTTGTCCGGTGCATGTAGGCAGATAGCCGCGACTGAAGATGGACGCGCTTGGATTCTAACAGATTCCGGTATTTATCAAAGCGATGACTTCACAAACTGGAGTTTGCTCCCCTCTGAAGTCCCTGTGACCGCCCTGCTGGGTGCCATGGTTTGGCCACAGGGAAGTCATACACTGGCATTACTTGCTGAAAAAGATGGCTCTCTGTTCTTTGCCACCAATATCGATGGAGTCCATTCTTGGCAGGAGCAAGCTCCCGAAACTTTCCCTGTTCGCAATTTCAGTACTCAACTATATAAAGCAAACAATCATCCAATGCTCCGTTTAGTCGGCGGTGTAACGCGTACGGGTGCTCCTGCCACTTCCGTTTGGATCACGAGCAATGGAAACGATTGGTTTGGACTTGACTTGGCTGCCGGAGCCATTCCCGCATCAATGGAAAAAGGGGCTTTGGTGCAAACTCCATCGGATGGTAACTTGTACTATTATGCCACAGAACAAGCCGAAGGTATAAAGCGAGTAGCTGTGGCATATTCGACTGATAAGGGCATCACATGGAAACGTGGAGCCGCCGATATTATGTTGCCGGCCGATCCTTTCTACACAGCCGGCTATCCGTTGTCGTTCGTCTGTGCTTTTGATGATGGGGCTTACAATATATATCAGTTGGGAGGCGTTAGCTCTTCAGGAACATTCTTTTCCTCAATATGGAAGGGTATCCTGAAACTGAATGAAAACAAT","6.40","-4.38","50701","MCKKHFIRYLFWIFISFCSGIALVSCKESKLDLEDVNVVDLQIHRFYLSTKKNPDLEKVFFSIDHAKGTIVNKKYMPYGTVLDSVLMNLVTDLSAKKLQVAVNDGEYKDWHNKDSLWLRDCHTLHLMVFDESGEKTKKYTVTLNRYDYQPTTFVWHMLDGVALPDINASFVDVVTHADRVYLVAATGNKTLLYSSDRKNPVHWTLLSSSGLSGACRQIAATEDGRAWILTDSGIYQSDDFTNWSLLPSEVPVTALLGAMVWPQGSHTLALLAEKDGSLFFATNIDGVHSWQEQAPETFPVRNFSTQLYKANNHPMLRLVGGVTRTGAPATSVWITSNGNDWFGLDLAAGAIPASMEKGALVQTPSDGNLYYYATEQAEGIKRVAVAYSTDKGITWKRGAADIMLPADPFYTAGYPLSFVCAFDDGAYNIYQLGGVSSSGTFFSSIWKGILKLNENN","224074 225441","TIGR ID: PG0188","lipoprotein","Periplasm, Cytoplasm","This sequence corresponds to gi:34396355 in Genbank. ","
InterPro
IPR011040
Domain
Neuraminidase
SSF50939\"[165-454]TSialidase
noIPR
unintegrated
unintegrated
PS51257\"[1-26]TPROKAR_LIPOPROTEIN


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Mar 1 13:29:48 2005","Tue Mar 1 13:29:48 2005","Fri Feb 23 16:15:52 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Feb 23 16:15:52 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Fri Feb 23 16:15:52 MST 2001","34540044","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Tue Mar 1 13:29:48 2005","","1","","4","PG0188" "PG0173","225431","226135","705","ATGAAAACAATTAGTAAGAACCATGCGGCACGGATCTGTGCCGCCATTGCTTTGTTTGCAGTGTGTAACGGCCGGATAGCTGCTCAGGATTTTCTCTATGAAATAGGAGGAGGTTTTGGTGCTGCTCAGTATTTTGGCGATGCAAACAGAGGCTTGTTCGGTTCATCCGGAGTAGGTTTGGAGTTGGTCGGACGTTACAATTATAATTTTCGCTGGGCTTTCAGTACCATGTTGGATTGGCGTACATTGAGAGGCGATACCGATAAGTCCGGGAATGTCTTCCCCGATTTTGCTCAAGCGGATTTTAAGGTCGGCTTGACTCAGCTCCACGTTAGAAGCGAATTTAACTTTCTCCCTTATAGCGATGGCTATAAGTATCTTGGTACAGCTCGGCTGTCTCCTTATGTAGCGGCCGGGTTGTCTTTGGGTTTTGCTTCGGGTGCTAAAGGTTCGGCTTTTGCTCCCGGGATTACTGCGGGAATGGGAGTGAAGTATAAGCTTAAACCGCGGATCAATGTCGGTATCGAGTATTCTTTCACGGGGTTACTTACCGATGCTTTGGATGCGCTGACGGATAAAAGTGTTTGGCTCGAGGATCCATATAAGATCAATGACTCCTGGGTCAAAAACAAGGATGCTACAGGGGCCTTAGTGCTTAGGATTACGTATGACTTCGGCCTGCGTAAGACTTTTTGTAATAAACAA","10.00","7.33","25678","MKTISKNHAARICAAIALFAVCNGRIAAQDFLYEIGGGFGAAQYFGDANRGLFGSSGVGLELVGRYNYNFRWAFSTMLDWRTLRGDTDKSGNVFPDFAQADFKVGLTQLHVRSEFNFLPYSDGYKYLGTARLSPYVAAGLSLGFASGAKGSAFAPGITAGMGVKYKLKPRINVGIEYSFTGLLTDALDALTDKSVWLEDPYKINDSWVKNKDATGALVLRITYDFGLRKTFCNKQ","225431 226135","TIGR ID: PG0189","conserved hypothetical protein","Outer membrane, Extracellular","Its nearest neighbor in the NR database is gi:23137184 from Cytophaga hutchinsonii.","
noIPR
unintegrated
unintegrated
SSF56925\"[27-231]TSSF56925


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Mar 1 13:43:44 2005","Tue Mar 1 13:43:44 2005","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 1 13:43:44 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540045","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Tue Mar 1 13:43:44 2005","","1","","4","PG0189" "PG0174","226216","226977","762","ATGGAAGGTGATGGAGACAAGCTCCAGTCAGCAGTTATAGTGCCGAGGCATATCGCTTTGGTCATGGATGGTAATGGCCGTTGGGCAAAGATACGAGGGAAAGAGCGATGCGAAGGACATGCGGCCGGTGTGGATGCTCTGCGCGTAGCTTTGCGTGCAGCAGCCGGTTGCGGTGTGGAATATCTCACAGCCTACACCTTCAGTACGGAGAATTGGAATCGTCCGGAAGAGGAAGTCAGGGCGCTGATGGGCCTTTTCGTTACAGCTATCATGAATGAGATGCTGGACTTGATGACCAATAACATTCGCCTCTTGGCTATCGGCGATTTCAGTCGGCTCCCCGAGGATGTCCGTGAATCGTTAGAAAAGGGTATTCGAGAGACTGCCGGAAACACGGGGCTGACTTTGGTTTTGGCCCTTAGCTACAGTTCTCGCTGGGAAATGACCGATGTCATCCGTAGATTGGCTCGAAAGGTTCGGGATGGAAGTGTGGAGCCTGAAGATATAAATGTCGATTTGGTTTCTGATCATCTTTCCACCGCCGGCATTCCGGATCCGGATCTCTTCATTCGTACAGGTGGAGAGAAGCGTATCAGCAATTTTCTTATGTGGCAAATGGCCTATACGGAATTGTTTTTTACCGATACGCTTTGGCCGGACTTTGATGCCGACTGTCTGAAGGCAGCCATAGAAGAATATTCATCGAGGGAGCGTCGATTCGGCAAGACCAGCGAGCAAATCGCTCTCAGAGAAAATAAATAT","4.90","-8.40","28600","MEGDGDKLQSAVIVPRHIALVMDGNGRWAKIRGKERCEGHAAGVDALRVALRAAAGCGVEYLTAYTFSTENWNRPEEEVRALMGLFVTAIMNEMLDLMTNNIRLLAIGDFSRLPEDVRESLEKGIRETAGNTGLTLVLALSYSSRWEMTDVIRRLARKVRDGSVEPEDINVDLVSDHLSTAGIPDPDLFIRTGGEKRISNFLMWQMAYTELFFTDTLWPDFDADCLKAAIEEYSSRERRFGKTSEQIALRENKY","226216 226977","TIGR ID: PG0190","undecaprenyl diphosphate synthase","Cytoplasm","PG0174 is similar in gapped BLAST to undecaprenyl diphosphate synthase sequences, e.g., residues 13-252 are 45% similar to the enzyme in Vibrio cholerae (gb|AAF95400). Residues 16-243 are 48% similar to the enzyme in E.coli (gb|AAG54476).","
InterPro
IPR001441
Family
Di-trans-poly-cis-decaprenylcistransferase
PD003461\"[16-236]TUPP_synth
G3DSA:3.40.1180.10\"[13-250]TUPP_synth
PTHR10291\"[1-248]TUPP_synth
PF01255\"[21-242]TPrenyltransf
TIGR00055\"[14-241]TuppS
PS01066\"[187-204]TUPP_SYNTHETASE
SSF64005\"[10-237]TUPP_synth


","BeTs to 16 clades of COG0020COG name: Undecaprenyl pyrophosphate synthaseFunctional Class: IThe phylogenetic pattern of COG0020 is AmtkYqvcebRhuj--olinxNumber of proteins in this genome belonging to this COG is 1","***** IPB001441 (Undecaprenyl pyrophosphate synthetase family) with a combined E-value of 2.1e-72. IPB001441A 15-29 IPB001441B 58-85 IPB001441C 124-155 IPB001441D 178-219","Residues 21-241 are 47% similar to a (TRANSFERASE PROTEIN UNDECAPRENYL) protein domain (PD003461) which is seen in UPPS_ECOLI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri May 4 14:34:48 MDT 2001","Fri Feb 23 16:27:38 MST 2001","Fri May 4 14:34:48 MDT 2001","Fri Feb 23 16:27:38 MST 2001","Fri Feb 23 16:27:38 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Feb 23 16:27:38 MST 2001","-66% similar to PDB:1JP3 Structure of E.coli undecaprenyl pyrophosphate synthase (E_value = 4.7E_60);-66% similar to PDB:1UEH E. coli undecaprenyl pyrophosphate synthase in complex with Triton X-100, magnesium and sulfate (E_value = 4.7E_60);-66% similar to PDB:1V7U Crystal structure of Undecaprenyl Pyrophosphate Synthase with farnesyl pyrophosphate (E_value = 4.7E_60);-66% similar to PDB:1X06 Crystal structure of undecaprenyl pyrophosphate synthase in complex with Mg, IPP and Fspp (E_value = 4.7E_60);-66% similar to PDB:1X07 Crystal structure of undecaprenyl pyrophosphate synthase in complex with Mg and IPP (E_value = 4.7E_60);","","","Residues 21 to 242 (E-value = 1.8e-109) place PG0174 in the UPP_synthetase family which is described as Putative undecaprenyl diphosphate synthase (PF01255)","Fri May 4 14:34:48 MDT 2001","34540046","","","","","","1","","4","PG0190" "PG0175","226998","229670","2673","ATGTACAAAAAGATTATTGCCGTAGCAGCTCTCTTCTGCGCCAGCATAGGGATCCTGAAAGGACAGTCCTCGGATCTGACCCCTCAGGATACTATATATAGCCCTGAAATATCCTATGCCAAGCCTATTCATAAGACCATAGCATCTATTGAGATCGAGGGAATGAGGTCTTTCGATGACTTTGTCTTGCGCAATCTTTCAGGCTTGGCTGTAGGTGATGAAGTCCTGATTCCTGGAGATGCCATGTCTGCTGCCGTGAATAGAATTATGCGTCAGGGCTACTTCTCAAATGTGCGAATCATCGCGGATAAATATGTCGGCAATAAAGTCTATCTGAAAATCATTGTCACTGAACGTCCTCGCATCAGTAAGGTTACTTTTAGCGGGGTAAAGAAGTCTGAGAGAGAAGATCTTGAAATGAAAATCGGTCTTCGCGAGGGGATTCAGATGACCAGAAATAATGAAGACAAGGTCAGGCAAATCGTACAGAAGTATTTTAGTGAGAAAGGTTATCGCGATGCCAGCATACGGATAACGCAGGAACCGGATCTTTCCAAAGATGGCTTTGTCAATGTGCTTATCTCGATTGAGAAGAAAAGCAAAACCAAGGTGAATGAAATTTATTTTTCCGGCAACAAGGCCCTTAGCAATCATAAGCTAAGAATGGCGATGAAGAACACCAATGCCAAATTCAGTCTTAGAAAGCATATTCGCTCATCTTTCTTGAAACTTTTTAGTACTCATAAGTTTGTGGAAGAGAGCTACCGTGAAGATTTGGTCCGATTGATAGAGAAGTATCAGGAATATGGATATCGTGATGCTGAAATACTGACCGACAGTGTCGTGAAGGCTCCTGACGGCAAAAGAGTGGATATTTATCTCAACATCGAAGAGGGGCAGAAGTATTATATTAAGGATGTCAACTTTGTGGGCAATTCACAATATCCATCGGAGTATTTGGAACGAGTGCTCGGAATAAAATCCGGAGATGTGTACAATCAGAGACGATTGGCTAAGCGTCTCAATGAAGATGAAGATGCTGTGGGGAACCTGTACTATAACAATGGCTATATTTTTGCGTGGGTCGATCCCGTGGAAACAAATGTAGTGGGGGATTCTGTTTCGCTTGATATTCGTATAGCGGAGGGGAAGCAGGCCAATATCAATAAGGTGATCATCAAAGGAAATACTGTCGTGTACGAAGACGTAGTACGCCGAGAGCTTTACACAAAGCCCGGCCAGCTCTTTAGTCGCGAGGATATCATTAACTCTATTCGTCTCATCAATCAGCTTGGGCATTTCGATGCCGAAAAATCTATTCCCCGTCCGATTCCCAATCCCGAAACAGGAACAGTGGATATAGAGTATGATTTGGTGCCGCGTAGCAGTGACCAATTGGAGCTTTCTGTCGGTTGGAGTCAGTCCGGACTTCTGTTCCGAGGAGCCATTAAGTTCACGAACTTCTCTGTCGGCAACTTGCTCCATCCCTCGATGTATAAGAAAGGGATCATTCCGCAAGGGGATGGGCAAACACTATCACTGAGTGCTCAGACCAATGGAAAGTACTATCAGCAGTATAGTGTCACATTTATGGATCCATGGTTTGGGGGCAAGCGGCCGGATATGTTCAGCTTCAGTGCATTCTATTCCAAGACTACGGCGATTGACTCCAAGTTCTACAATAGCAATGCCGGCAACTACTATAATGCCTACTATAATAGCTACTACAACAACTATAATAGTTATTACAACGGTATGTCGAACTATACCGGCGACCTCTATACTCAGGCCAGCGATCCGGATCGTTCGCTTCAGATGTTAGGTACTTCGATCGGTTACGGTAAGCGTTTGACTTGGCCGGACAATTGGTTCCAGATTTATACTTCTCTGAACTACACCTACTATAGACTGCGAAATTGGAGCTACAATACCTTCCAAAATTTCCATCATGGCTCGGCTAATGATCTCAACTTGGAGCTGCGTCTCTCTCGTACTTCCATCGATAATCCTATTTATACCAGAAGCGGATCGGATTTCATGGTTTCTGTTGCTGCTACTCTTCCTTATTCTTTGTGGGACAATCATGACTATGCCAGCCAGAACCTCAGCGTAAGCGATCGTTACAGATTTATCGAGTATCACAAGTGGAAGTTTAGAGGACGAGTTTTTACTCCATTGCTCAATCCTGCTACGCATAAATATACACCGGTGCTCATGAGTCGAGTGGAAGGAGCAGTTCTTGGTTCGTATAATTCCAATAAGAAATCTCCTTTCGGTACTTTCTATATGGGAGGTGATGGTATGTCCAGCTATTATGGTGGCTACATGAATGAGACTATAGGTTTGCGTGGTTATAAGAACGGATCTATTGCCGGTAATAACTACGACTATGCATATGCTTATATGCGGCTTACGATGGAACTACGTTTCCCGATTCTGTTTGAAAACTCATTCAATGCGTGGCTCTTAGCTTTTGCCGAAGCAGGCAATGCGTGGCGCAGTATCGACAATTATAATCCCTTTAACCTGAAGCGATCGGCCGGTGTAGGATTGCGTGTAACGTTACCGATGGTCGGAATGCTCGGTATCGATTGGGGATATGGCTTTGACCGTCCGGACAATTCTCTACAGCGAGGAGGAAGCAATGTCCACTTTGTGCTCGGACAGGAGTTC","9.90","16.91","101865","MYKKIIAVAALFCASIGILKGQSSDLTPQDTIYSPEISYAKPIHKTIASIEIEGMRSFDDFVLRNLSGLAVGDEVLIPGDAMSAAVNRIMRQGYFSNVRIIADKYVGNKVYLKIIVTERPRISKVTFSGVKKSEREDLEMKIGLREGIQMTRNNEDKVRQIVQKYFSEKGYRDASIRITQEPDLSKDGFVNVLISIEKKSKTKVNEIYFSGNKALSNHKLRMAMKNTNAKFSLRKHIRSSFLKLFSTHKFVEESYREDLVRLIEKYQEYGYRDAEILTDSVVKAPDGKRVDIYLNIEEGQKYYIKDVNFVGNSQYPSEYLERVLGIKSGDVYNQRRLAKRLNEDEDAVGNLYYNNGYIFAWVDPVETNVVGDSVSLDIRIAEGKQANINKVIIKGNTVVYEDVVRRELYTKPGQLFSREDIINSIRLINQLGHFDAEKSIPRPIPNPETGTVDIEYDLVPRSSDQLELSVGWSQSGLLFRGAIKFTNFSVGNLLHPSMYKKGIIPQGDGQTLSLSAQTNGKYYQQYSVTFMDPWFGGKRPDMFSFSAFYSKTTAIDSKFYNSNAGNYYNAYYNSYYNNYNSYYNGMSNYTGDLYTQASDPDRSLQMLGTSIGYGKRLTWPDNWFQIYTSLNYTYYRLRNWSYNTFQNFHHGSANDLNLELRLSRTSIDNPIYTRSGSDFMVSVAATLPYSLWDNHDYASQNLSVSDRYRFIEYHKWKFRGRVFTPLLNPATHKYTPVLMSRVEGAVLGSYNSNKKSPFGTFYMGGDGMSSYYGGYMNETIGLRGYKNGSIAGNNYDYAYAYMRLTMELRFPILFENSFNAWLLAFAEAGNAWRSIDNYNPFNLKRSAGVGLRVTLPMVGMLGIDWGYGFDRPDNSLQRGGSNVHFVLGQEF","226977 229670","TIGR ID: PG0191","probable outer membrane protein (Omp85 analog)","Outer membrane, Extracellular","Numerous moderate;y significant hits in gapped BLAST to probable outer membrane proteins in bacteria, e.g. residues 46-5529 are 27% similar to a probable outer membrane protein in Pseudomonas aeruginosa (gb|AAG07036). Residues 85-535 are 26% similar to gb|AAF83856, outer membrane antigen, from Xylella fastidiosa. Resiudes 49-857 are 21% similar to (AE004297) surface antigen of Vibrio cholerae.This sequence is orthologous to CT241 and to BT3725.","
InterPro
IPR000184
Family
Bacterial surface antigen (D15)
PF01103\"[506-891]TBac_surface_Ag
InterPro
IPR010827
Repeat
Surface antigen variable number
PF07244\"[45-119]T\"[120-199]T\"[202-299]T\"[302-383]T\"[386-461]TSurf_Ag_VNR


","BeTs to 9 clades of COG0729COG name: Predicted outer membrane proteinFunctional Class: MThe phylogenetic pattern of COG0729 is -----QvcE--Huj--olinxNumber of proteins in this genome belonging to this COG is 3","***** PF01103 (Bacterial surface antigen) with a combined E-value of 2.3e-07. PF01103C 356-398 PF01103J 758-796 PF01103E 185-238","Residues 373-537 are 26% similar to a (PROTEIN OUTER MEMBRANE D15 PRECURSOR SIGNAL ANTIGEN) protein domain (PD003557) which is seen in O68454_BBBBB.Residues 31-357 are 25% similar to a (PROTEIN OUTER MEMBRANE D15) protein domain (PD005071) which is seen in Q9ZE03_RICPR.","","Wed Jun 13 07:59:38 MDT 2001","","Wed Jun 13 07:59:38 MDT 2001","Wed Jun 13 07:59:38 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Jun 13 07:59:38 MDT 2001","Wed Jun 13 07:59:38 MDT 2001","","","Wed Mar 22 11:15:24 MST 2000","Fri Dec 26 13:37:09 2003","Tue May 22 15:27:09 MDT 2001","Fri Dec 26 13:37:09 2003","Fri Dec 26 13:37:09 2003","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Feb 23 16:34:01 MST 2001","-51% similar to PDB:1RKY PPLO + Xe (E_value = );-51% similar to PDB:1W7C PPLO AT 1.23 ANGSTROMS (E_value = );-40% similar to PDB:1FEP FERRIC ENTEROBACTIN RECEPTOR (E_value = );","","","Residues 144 to 204 (E-value = 5.9e-05) place PG0175 in the Surf_Ag_VNR family which is described as Surface antigen variable number repeat (PF07244)Residues 326 to 388 (E-value = 1.2e-05) place PG0175 in the Surf_Ag_VNR family which is described as Surface antigen variable number repeat (PF07244)Residues 410 to 466 (E-value = 3.6e-07) place PG0175 in the Surf_Ag_VNR family which is described as Surface antigen variable number repeat (PF07244)Residues 466 to 891 (E-value = 5.5e-09) place PG0175 in the Bac_surface_Ag family which is described as Surface antigen (PF01103)","Fri Dec 26 13:37:09 2003","34540047","","","","","","1","","4","PG0191" "PG0176","229730","230251","522","ATGAATGGCGATATGAAACGGTTTTTGATTTTGATCGGCTTTGCACTGGCGGTAGCTTTCTCCGGTTTTTCCCAAAAGTTCGCTTTGGTAGATATGGAATATATCCTCAGGAATATTCCTGACTATGAGATGATGAACGAACAGCTGGAACAGGTGTCCAAGAAATGGCAAAATGAAATCGAAGCTCTCGAAAATGAAGCCCAATCTATGTATAAGAAGTATCAGAGCGATCTCGTATTCTTGTCTGCTGCACAGAAGAAAACCCAAGAAGAGGCTATCGTAAAGAAAGAGCAGCAAGCATCCGAGCTCAAGCGGAAGTATTTCGGCCCGGAGGGGGAGCTGTATAAGAAACGCTCCGATCTGATGAAGCCTATTCAGGATGAGATTTGGAATGCTATCAAAGAGATTGCCAAGCGTAACAACTATCAGATGGTGCTTGATAGAGGTACGTCCGGAATTATCTTTGCCAGTCCGTCTATTGACATTAGCGACCTTGTACTGAGCAAGATGGGCTTTAGCAAG","7.00","0.00","20113","MNGDMKRFLILIGFALAVAFSGFSQKFALVDMEYILRNIPDYEMMNEQLEQVSKKWQNEIEALENEAQSMYKKYQSDLVFLSAAQKKTQEEAIVKKEQQASELKRKYFGPEGELYKKRSDLMKPIQDEIWNAIKEIAKRNNYQMVLDRGTSGIIFASPSIDISDLVLSKMGFSK","229730 230251","TIGR ID: PG0192","possible outer membrane protein","Outer membrane, Cytoplasm","PG0176 is weakly similar in gapped BLAST to some outer membrane proteins in bacteria. Residues 5-147 are 27% similar to a periplasmic protein in Photorhabdus luminescens (AJ236920). Residues 5-170 are 26% similar to OMPH_YEREN (M34854). ","
InterPro
IPR005632
Family
Outer membrane chaperone Skp (OmpH)
PF03938\"[11-171]TOmpH
noIPR
unintegrated
unintegrated
G3DSA:3.30.910.20\"[22-171]TG3DSA:3.30.910.20
SSF111384\"[22-171]TSSF111384


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 26-170 are 24% similar to a (PROTEIN PRECURSOR SIGNAL OUTER) protein domain (PD010938) which is seen in OMPH_YEREN.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Mon Feb 26 17:03:43 MST 2001","Mon Feb 26 17:03:43 MST 2001","Mon Feb 26 17:03:43 MST 2001","","Mon Feb 26 17:03:43 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 5-171 are 22% similar to PG0177, a possible outer membrane protein.","Mon Apr 2 12:54:09 MDT 2001","Mon Feb 26 17:03:43 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 5 to 171 (E-value = 2.3e-27) place PG0176 in the OmpH family which is described as Outer membrane protein (OmpH-like) (PF03938)","Mon Apr 2 12:54:09 MDT 2001","34540048","","","","","","1","","4","PG0192" "PG0177","230289","230777","489","ATGAAGAAATTTTTTCTCATGCTTCTGATGGCTCTTCCTTTGAGCCTCTTGGCACAAAAGGTGGCAGTGGTAAACACTGAGGAGATCATTTCCAAAATGCCGGAACAAGTAGCTGCTACCAAACAGCTCAACGAATTGGCCGAAAAGTATCGCCTTGATCTCAAGAGTATGGACGATGAGTTTGCCAAAAAGACAGAAGAATTTGTAAAGGAAAAAGACTCTCTACTGGAGAACATCCGCAATCGTCGTCAGCAGGAACTTCAGGATATTCAAACTCGTTATCAGCAGTCATACCAAACGATGCAGGAGGATTTGCAAAAGCGCCAACAACAGCTTTTTGCTCCTATCCAACAAAAGGTGGCTGATGCCATCAAGAAAGTGGGTGACGAAGAAAACTGTGCCTACATCATGGAGGCCGGTATGATGCTTTACACCGGAGCTACTGCTATTGACTTGACCGCAAAGGTAAAAGCGAAACTCGGAATCAAG","8.40","0.96","18795","MKKFFLMLLMALPLSLLAQKVAVVNTEEIISKMPEQVAATKQLNELAEKYRLDLKSMDDEFAKKTEEFVKEKDSLLENIRNRRQQELQDIQTRYQQSYQTMQEDLQKRQQQLFAPIQQKVADAIKKVGDEENCAYIMEAGMMLYTGATAIDLTAKVKAKLGIK","230289 230777","TIGR ID: PG0193","possible outer membrane protein","Periplasm, Outer membrane, Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR005632
Family
Outer membrane chaperone Skp (OmpH)
PF03938\"[5-161]TOmpH
noIPR
unintegrated
unintegrated
G3DSA:3.30.910.20\"[16-161]TG3DSA:3.30.910.20
SSF111384\"[16-161]TSSF111384


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 20-156 are 21% similar to a (PROTEIN PRECURSOR SIGNAL OUTER) protein domain (PD010938) which is seen in OMPH_YEREN.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Mon Feb 26 16:18:10 MST 2001","","Mon Feb 26 16:18:10 MST 2001","","Mon Feb 26 16:18:10 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1-161 are 22% similar to PG0176, a possible outer membrane protein.","Mon Apr 2 12:56:33 MDT 2001","Mon Feb 26 16:18:10 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 1 to 161 (E-value = 2.5e-09) place PG0177 in the OmpH family which is described as Outer membrane protein (OmpH-like) (PF03938)","Mon Apr 2 12:56:33 MDT 2001","34540049","","","","","","1","","4","PG0193" "PG0178","231068","231967","900","ATGAAGACAAATATAGTTGATGTTTTTTGCATCATAGATGATTTCTCCAAGCTTTTTGATGAAGCAATCAAGAAAAAGACCCTCGAAGAGGCAGACAAAAAACGCAGGAATAGAAAGTTTAAGATGTCGGACAGTGAGGTCATGACCATCCTGATCCTGTTTCATCTGTCAAGATACCGAGATTTGAAAGCTTTTTATCTTCAATACATCACCTATTCTTGTCGATCCGAGTTCCCACATCTTGTCTCTTATAATCGCTTTGTGGAGCTGCAAAGCAGGGTGGGTTTCAAGCTGATAGCATTTCTCAATATGTGTTGTTTGGGTCAATGTACAGGCATCTCTTTCATCGATTCCACCCCACTGAAGGCTTGTCATATCAAACGAGCTCATGGGCATAGGACAATGAGGGGATGGGCTCAAAAAGGCAAAAGCACCATGGGTTGGTTTTATGGATTCAAACTGCATATTGTTATCAACGACAGGGGTGAAATCATCAACTATCAAATCACACCGGGCAATTGTGATGACAGAGAACCTCTGAAAGACGGAACATTCACCAAGAATCTTTTTGGCAAACTCATTGCCGATAGAGGCTACATTTCCCAAAACCTTTTTGACCGGCTCTTTGTCGATGACATCCACATGATAACCAAAATCAAAAAGAACATGAAGAACTCCCTGATGCATCTATATGACAAAGTTTTATTGAGAAAGAGAGCCCTGTTCGAAACGGTCAATGATATGCTCAAAAATGTCTGTCAGATAGAGCACACGAGACATCGCAGTGCCAACAATTTTGTCACCAACCTGATCTCCGGTATCATCGCTTACAACATCCTGCCTAAAAAGCCTGAACTCAATATTGAAATCATCAGAAACCCTAACTTTCCTATTTCCGCT","10.30","20.02","35065","MKTNIVDVFCIIDDFSKLFDEAIKKKTLEEADKKRRNRKFKMSDSEVMTILILFHLSRYRDLKAFYLQYITYSCRSEFPHLVSYNRFVELQSRVGFKLIAFLNMCCLGQCTGISFIDSTPLKACHIKRAHGHRTMRGWAQKGKSTMGWFYGFKLHIVINDRGEIINYQITPGNCDDREPLKDGTFTKNLFGKLIADRGYISQNLFDRLFVDDIHMITKIKKNMKNSLMHLYDKVLLRKRALFETVNDMLKNVCQIEHTRHRSANNFVTNLISGIIAYNILPKKPELNIEIIRNPNFPISA","231068 231967","TIGR ID: PG0194","ISPg3 (IS195) transposase","Cytoplasm","PG0178 is equivalent to the previously sequenced gb|AAC26596.1, a predicted IS195 transposase. Residues 75-286 are 52% similar to a transposase sequence from Pasteurella multocida (Y15510). ","
InterPro
IPR002559
Domain
Transposase, IS4-like
PF01609\"[113-279]TTransposase_11
noIPR
unintegrated
unintegrated
SSF50249\"[235-300]TNucleic_acid_OB


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 212-286 are 97% similar to a (PROTEASE PUTATIVE TRANSPOSASE PLASMID) protein domain (PD190030) which is seen in O87010_PORGI.Residues 135-208 are identical to a (TRANSPOSASE PLASMID PROTEIN ELEMENT) protein domain (PD004652) which is seen in O87010_PORGI.Residues 75-133 are identical to a (PROTEASE PUTATIVE TRANSPOSASE PLASMID) protein domain (PD190029) which is seen in O87010_PORGI.Residues 1-74 are 97% similar to a (PUTATIVE PROTEASE PROTEASE) protein domain (PD203593) which is seen in O87010_PORGI.Residues 116-280 are 29% similar to a (HYPOTHETICAL 20.1 KD PROTEIN) protein domain (PD207068) which is seen in Q06444_BACST.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Feb 8 16:05:42 MST 2001","Thu Feb 8 16:05:42 MST 2001","Thu Feb 8 16:05:42 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","PG0178 is identical to PG0919, PG0236, PG0178 and PG1115, predicted ISPg3 transposases. PG0178 is similar to fragments of PG1663, PG1328, PG1660, PG0273.","Thu Feb 8 16:05:42 MST 2001","","No significant hits to the PDB database (E-value < E-10).","","","Residues 113 to 279 (E-value = 3.3e-33) place PG0178 in the Transposase_11 family which is described as Transposase DDE domain (PF01609)","","34540050","","Lewis JP, Macrina FL, IS195, an insertion sequence-like element associated with protease genes in Porphyromonas gingivalis. Infect Immun 1998 Jul;66(7):3035-42, PubMed: 9632563.","Kehrenberg C, Werckenthin C, Schwarz S, Tn5706, a transposon-like element from Pasteurella multocida mediating tetracycline resistance. Antimicrob Agents Chemother 1998 Aug;42(8):2116-8, PubMed: 9687418.","Thu Feb 8 16:05:42 MST 2001","Thu Feb 8 16:05:42 MST 2001","1","","4","PG0194" "PG0179","232186","232761","576","ATGAATAAGAGTATTAAAGGCTCAAAGACAGAAAAGCATTTGCTCATGGCATTTGCCGGAGAATCGCAAGCTCGGTCGCGCTATACTTTCTTTGCAAGTGTTGCCAAGAAAGAGGGTTATGAACAAATTGCCGGAGTTTTCATGGAAACCGCTGAGCAGGAAAAAGAGCATGCCAAAAGGTTTTTCTCTTTCTTGGAAGGCGGCATGCTTGAGATAACGGCTTCTTTTCCTGCAGGAATAATCGGTTCCACGGCTGAGAACTTGCGCGCGGCGGCTGCCGGTGAAAATGAAGAGTGGACAGATCTCTATCCGGCTTTTGCTGAAACAGCCGAAGAAGAGGGATTTAAGGAGATTGCAGCCGTATTTCGTCAGATAGCAAAGGTGGAAGCCGAGCATGAACGTCGCTATCTGGCTCTTTTGGCTCATGTGGAAGATGGATCGGTCTTCGAGCGAACGGAAGAAATCGCATGGCAATGTCGCAATTGCGGCTATGTCATTACTTCCAAGAAAGCTCCGAAGCTATGTCCCGCTTGCGCTCATCCGCAGGCTTACTTCGAGCCAATGAAAACGAATTAC","5.50","-4.97","21495","MNKSIKGSKTEKHLLMAFAGESQARSRYTFFASVAKKEGYEQIAGVFMETAEQEKEHAKRFFSFLEGGMLEITASFPAGIIGSTAENLRAAAAGENEEWTDLYPAFAETAEEEGFKEIAAVFRQIAKVEAEHERRYLALLAHVEDGSVFERTEEIAWQCRNCGYVITSKKAPKLCPACAHPQAYFEPMKTNY","232000 232761","TIGR ID: PG0195","rubrerythrin","Cytoplasm","PG0179 is equivalent to the previously reported (AF333323) rubrerythrin of Porphyromonas gingivalis in GenBANK.Several hits in gapped BLAST to rubrerythrin sequences. Residues 4-192 are 62% similar to the protein in Moorella thermoacetica (gb|AAF08979) and residues 3-192 are 57% similar to RUBY_DESVH (gb|AAB20261).","
InterPro
IPR003251
Domain
Rubrerythrin
PF02915\"[12-140]TRubrerythrin
InterPro
IPR004039
Domain
Rubredoxin-type Fe(Cys)4 protein
PS50903\"[154-188]TRUBREDOXIN_LIKE
InterPro
IPR009040
Domain
Ferritin-like
PS50905\"[4-147]TFERRITIN_LIKE
InterPro
IPR012347
Family
Ferritin-related
G3DSA:1.20.1260.10\"[2-147]Tno description
noIPR
unintegrated
unintegrated
G3DSA:2.20.28.10\"[148-192]Tno description


","BeTs to 4 clades of COG1592COG name: RubrerythrinFunctional Class: CThe phylogenetic pattern of COG1592 is AmT---v--b-----------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 17-186 are 58% similar to a (RUBRERYTHRIN PROTEIN ELECTRON TRANSPORT) protein domain (PD006198) which is seen in RUBY_DESVH.","","Wed Jun 13 08:02:28 MDT 2001","","Wed Jun 13 08:02:28 MDT 2001","Wed Jun 13 08:02:28 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Jun 13 08:02:28 MDT 2001","Wed Jun 13 08:02:28 MDT 2001","","","Mon Feb 26 17:12:21 MST 2001","Wed Jun 13 13:57:20 MDT 2001","Wed Apr 25 15:39:15 MDT 2001","","Mon Feb 26 17:12:21 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Feb 26 17:12:21 MST 2001","-76% similar to PDB:1B71 RUBRERYTHRIN (E_value = 4.3E_62);-76% similar to PDB:1DVB RUBRERYTHRIN (E_value = 4.3E_62);-76% similar to PDB:1JYB Crystal structure of Rubrerythrin (E_value = 4.3E_62);-76% similar to PDB:1LKM Crystal structure of Desulfovibrio vulgaris rubrerythrin all-iron(III) form (E_value = 4.3E_62);-76% similar to PDB:1LKO Crystal structure of Desulfovibrio vulgaris rubrerythrin all-iron(II) form (E_value = 4.3E_62);","","","Residues 10 to 143 (E-value = 1.3e-60) place PG0179 in the Rubrerythrin family which is described as Rubrerythrin (PF02915)","Wed Apr 25 15:39:15 MDT 2001","34540051","","","Prickril,B.C., Kurtz,D.M. Jr., LeGall,J. and Voordouw,G.Cloning and sequencing of the gene for rubrerythrin fromDesulfovibrio vulgaris (Hildenborough)Biochemistry 30 (46), 11118-11123 (1991). PubMed: 1932032","","Mon Feb 26 17:12:21 MST 2001","1","","","PG0195" "PG0180","233043","235865","2823","ATGGAATTGAAAAGATTTTTATCACTTGGTCTTCTGCTTGTGGGATTCATTCCGATGAAGCTTTCTGCCCAACAGGCTCAGCCACTCCCTACAGATCCGGCTGTTCGTGTCGGTAAGTTGGACAACGGATTGACTTATTTCATCCGTCACAACGAGAACCCGAAAGATCGTGCGGATTTCTTTATCGCACAAAAGGTAGGTTCTATTCTTGAAGAAGATAGCCAGTCCGGTTTGGCTCACTTCTTGGAACACATGGCTTTCAACGGTACGAAGAACTTCCCCGGTAAGAACTTGATCAACTATCTCGAAACGATCGGTGTACGTTTCGGTCAGAACCTGAACGCTTCTACCGGATTCGACAAGACGGAATATACGATAATGGATGTGCCGACTACACGTCAGGGAATCATCGACTCCTGCTTGCTTATCCTGCATGATTGGAGTAACAATATTACCCTCGACGGGCATGAGATCGACGAGGAGCGCGGTGTGATCCAGGAAGAGTGGCGTGCTCGTCGCGATGCCAACCTTCGTATGTTCGAGGCTATACTTGCCAAGGCTATGCCGGGTAATAAATATGCAGAACGCATGCCCATCGGTCTGATGGACGTCGTGCTCAACTTCAAGCATGATGAGCTGCGCAACTATTATAAGAAATGGTATCGTCCCGACCTGCAAGGTCTGGTGATCGTGGGAGATATCGATGTGGACTATGTGGAGAACAAGATCAAAGAACTCTTCAAGGACGTTCCTGCTCCCGTGAATCCAGCAGAGCGTATCTATACGCCGGTAGAGGACAACGATGAGCCTATCGTAGCCATTGCTACCGATGCTGAGGCTACTACCACGCAGCTCTCCATCAGCTTCAAGAGCGACCCCACTCCTCAAGAAGTGCGAGGATCGATATTCGGACTTGTGGAAGACTATATGAAACAGGTGATCACTACAGCCGTGAATGAGCGTCTGTCCGAGATTACTCACAAGCCTAACGCTCCTTTCCTCAGTGCAGGAGCTTTCTTCTCTAACTTCATGTACATCACCCAGACTAAGGACGCATTCAATTTTGTTGCCACGGTTCGTGAGGGTGAAGCGGAGAAAGCGATGAACGCATTGGTGGCAGAGATAGAAAGCCTCCGTCAGTTCGGTATCACCAAAGGCGAATACGATCGTGCACGCACGAATGTGCTCAAGCGATACGAGAATCAATACAACGAAAGAGACAAGCGTAAGAACAATGCTTATGCCAATGAATACTCCACCTACTTCACCGATGGCGGCTATATCCCGGGTATTGAGGTGGAATATCAGACGGTGAATGCTTTTGCTCCTCAGGTTCCTCTGGAAGCATTCAATCAGGCTATTGCCCAAATGATCGATCCGGTGAAGAATGCTGTCGTTACCCTCACCGGTCCTTCAAAGGCTGAAGCCAAGATTCCGAGCGAAGCAGACTTCCTCGCTGCTTTCAAAGCTGCTCGTCAGCAGAAAGTAGAAGCCAAGAAAGACGAAGTCTCCGACCAAAAATTGATGGAGAAAGCTCCTAAGGCCGGAAAGATCGTTTCCGAGAAGAAAGATCAGAAGTTCGGTACCACGGAACTTACCCTTAGCAATGGCATCAAAGTATACCTCAAGAAGACCGATTTCAAATCAAACGAAATCCTGATGAGTGCTCTCAGCCCGGGTGGTATCCTCTCCGGAAAGCATGCTCCCAACCAATCTGTGATGAATTCGTTCATGAACGTGGGTGGCTTGGGCAACTTCGATGCTATCCAGCTGGATAAGGTGCTGACAGGTCGCTCTGCTTCCGTATCTCCCTCTTTGTCTCTGCTCAGTGAAGGTCTTTCGGGCAAAACGACTGTAGAAGATATGGAAACTTTCTTCCAGTTGATCTATCTCCAAATGACTGCTAACCGCAAGGATCCCGAAGCGTTCAAGGCCACACAGGAAAAGTTGTACAATAACTTGAAAAATCAGGAAGCCAACCCGATGGCTGCGCTTATGGACTCTATCCGTCATACCATGTACGGCGATAATCCGATGATGAAACCCATGAAAGCTGCTGACGTGGAGAAAGTAAATTACGATCAGGTAATGGCTTTCTACAATGAGCGATTCGCTGATGCCGGCGACTTTATGTTCTTCTTTATCGGTAATCTGGATGAAGCCAAGATGAAGCCATTGATCGAAACTTATCTTGCTTCATTGCCCAACCTCAAGCGTGGCGATAAGATGAATAAGGCTCAGGTACCGGCTGCCCGTTCGGGAAAGATCGATTGCAAGTTCGAGAAGGAAATGGATACTCCTTCGACTACTATATTCGATGTCGTGTCCGGAAATGTGGAATATACGCTCAAGAACAGTCTCCTGCTGGAAGTCTTCTCAGCCGTAATGGATCAGGTGTACACGGCTACCGTTCGCGAGAAGGAAGGCGGTGCATACAGTGTGGCTGCATTCGGCGGTCTCGAGCAATATCCTCAGCCCAAGGCTCTGATGCAGATCTATTTCCCCACGGATCCTGCTCGTGCCGAGGAAATGAATGCTATCGTTTTTGCTGAGTTGGAGAAGCTTGCCAAGGAGGGCCCCAATGTGGAATACTTTAAGAAGACTATCGAAAACCTGAATAAGCAGCACAAAGAAAGTCTGCGTGAGAATCGTTTCTGGCTCGAAGCCATGAAGGCGTCTTTCTTCGAAGGAAATGACTTCATCACAGACTACGAATCCGTACTGAACGGTCTTACTCCTGCTGAATTGCAAAAGTTTGCGGCAGACCTCTTGAAGCAGCAGAATCGGGTTGTTGTCATGATGGCTCCTGTTGCAAAGGCTCAA","5.20","-16.56","105653","MELKRFLSLGLLLVGFIPMKLSAQQAQPLPTDPAVRVGKLDNGLTYFIRHNENPKDRADFFIAQKVGSILEEDSQSGLAHFLEHMAFNGTKNFPGKNLINYLETIGVRFGQNLNASTGFDKTEYTIMDVPTTRQGIIDSCLLILHDWSNNITLDGHEIDEERGVIQEEWRARRDANLRMFEAILAKAMPGNKYAERMPIGLMDVVLNFKHDELRNYYKKWYRPDLQGLVIVGDIDVDYVENKIKELFKDVPAPVNPAERIYTPVEDNDEPIVAIATDAEATTTQLSISFKSDPTPQEVRGSIFGLVEDYMKQVITTAVNERLSEITHKPNAPFLSAGAFFSNFMYITQTKDAFNFVATVREGEAEKAMNALVAEIESLRQFGITKGEYDRARTNVLKRYENQYNERDKRKNNAYANEYSTYFTDGGYIPGIEVEYQTVNAFAPQVPLEAFNQAIAQMIDPVKNAVVTLTGPSKAEAKIPSEADFLAAFKAARQQKVEAKKDEVSDQKLMEKAPKAGKIVSEKKDQKFGTTELTLSNGIKVYLKKTDFKSNEILMSALSPGGILSGKHAPNQSVMNSFMNVGGLGNFDAIQLDKVLTGRSASVSPSLSLLSEGLSGKTTVEDMETFFQLIYLQMTANRKDPEAFKATQEKLYNNLKNQEANPMAALMDSIRHTMYGDNPMMKPMKAADVEKVNYDQVMAFYNERFADAGDFMFFFIGNLDEAKMKPLIETYLASLPNLKRGDKMNKAQVPAARSGKIDCKFEKEMDTPSTTIFDVVSGNVEYTLKNSLLLEVFSAVMDQVYTATVREKEGGAYSVAAFGGLEQYPQPKALMQIYFPTDPARAEEMNAIVFAELEKLAKEGPNVEYFKKTIENLNKQHKESLRENRFWLEAMKASFFEGNDFITDYESVLNGLTPAELQKFAADLLKQQNRVVVMMAPVAKAQ","233043 235865","TIGR ID: PG0196","probable zinc protease/ 106 kDa immunoreactive protein","Periplasm, Cytoplasm, Extracellular","PG0180 corresponds to the previously sequenced gb|AAD38979, a predicted 106 kDa immunoreactive protein.Numerous hits in gapped BLAST to zinc peptidase sequences, e.g. residues 38-88 are 25% similar to an enzyme from Arabidopsis thaliana (AB013392). See also PQQL_ECOLI.This sequence is similar to BT4320.","
InterPro
IPR001431
Binding_site
Peptidase M16, zinc-binding site
PS00143\"[67-90]TINSULINASE
InterPro
IPR007863
Domain
Peptidase M16, C-terminal
PF05193\"[207-395]T\"[690-872]TPeptidase_M16_C
InterPro
IPR011765
Domain
Peptidase M16, N-terminal
PF00675\"[46-168]TPeptidase_M16
noIPR
unintegrated
unintegrated
G3DSA:3.30.830.10\"[22-258]T\"[528-742]TG3DSA:3.30.830.10
PTHR11851\"[62-906]TPTHR11851
PTHR11851:SF63\"[62-906]TPTHR11851:SF63
SSF63411\"[25-263]T\"[333-492]T\"[526-737]T\"[785-941]TSSF63411


","BeTs to 10 clades of COG0612COG name: Predicted Zn-dependent peptidasesFunctional Class: RThe phylogenetic pattern of COG0612 is ----YQvCEBrhUJ--o---xNumber of proteins in this genome belonging to this COG is 2","***** IPB001431 (Insulinase family (Peptidase family M16)) with a combined E-value of 6.3e-16. IPB001431A 77-90 IPB001431B 114-128 IPB001431C 220-232","Residues 374-724 are 22% similar to a (PROTEASE ZINC PROBABLE PQQL) protein domain (PD043014) which is seen in O51486_BORBU.Residues 38-235 are 42% similar to a (PROTEASE PROTEIN METALLOPROTEASE HYDROLASE PROCESSING) protein domain (PD000718) which is seen in PQQL_ECOLI.Residues 310-734 are 20% similar to a (CHLOROPLAST PROCESSING ENZYME METALLOENDOPEPTIDASE) protein domain (PD044088) which is seen in O48870_ARATH.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Mon Feb 26 17:23:33 MST 2001","Mon Jan 5 12:28:38 2004","Wed Apr 25 15:43:57 MDT 2001","Mon Feb 26 17:19:34 MST 2001","Mon Feb 26 17:19:34 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Feb 26 17:19:34 MST 2001","-47% similar to PDB:1BE3 CYTOCHROME BC1 COMPLEX FROM BOVINE (E_value = 6.5E_14);-47% similar to PDB:1BGY CYTOCHROME BC1 COMPLEX FROM BOVINE (E_value = 6.5E_14);-47% similar to PDB:1L0L structure of bovine mitochondrial cytochrome bc1 complex with a bound fungicide famoxadone (E_value = 6.5E_14);-47% similar to PDB:1L0N native structure of bovine mitochondrial cytochrome bc1 complex (E_value = 6.5E_14);-47% similar to PDB:1NTK Crystal Structure of Mitochondrial Cytochrome bc1 in Complex with Antimycin A1 (E_value = 6.5E_14);","","","Residues 46 to 190 (E-value = 5.8e-21) place PG0180 in the Peptidase_M16 family which is described as Insulinase (Peptidase family M16) (PF00675)Residues 207 to 395 (E-value = 3.6e-28) place PG0180 in the Peptidase_M16_C family which is described as Peptidase M16 inactive domain (PF05193)Residues 690 to 872 (E-value = 2.4e-27) place PG0180 in the Peptidase_M16_C family which is described as Peptidase M16 inactive domain (PF05193)","Mon Jan 5 12:28:38 2004","34540052","","Ross,B.C., Barr,I., Patterson,M., Agius,C., Rothel,L., Margetts,M., Hocking,D. and Webb,E.Porphyromonas gingivalis polypeptides and nucleic acidsPatent: Australia (AU 98/01023)-PCT 10-DEC-1998; CSL Ltd; 45 Poplar Road; R&D; Parkville, Victoria; Australia;","","Mon Feb 26 17:23:33 MST 2001","","1","","","PG0196" "PG0181","236294","236034","261","TTGTATGAGACCATAGTATCCTCTCGTGGAAGTTCATTCTTTGTATCTCAGGGAAAGACCGGTGAGCAGGTGTATCGCTGCCAAGTAAACAGAGAGCAGTGCCCGAATACGTTGCCAATCGATAAGCATATCGACTTGGTTCGAAAATACATTCGGGCTTTCCTATATCGATTCGCTGGCATGACGTCCCTGAATGAAACCTCTTCTCGTCGGATGATTTTCCTTGTCGTGCCATCGTTTTGTGTCATTGAGATCATACCA","9.50","4.08","10036","LYETIVSSRGSSFFVSQGKTGEQVYRCQVNREQCPNTLPIDKHIDLVRKYIRAFLYRFAGMTSLNETSSRRMIFLVVPSFCVIEIIP","236294 236034","TIGR ID: PG0197","hypothetical protein","Cytoplasm","No hit found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Jul 13 14:15:56 2004","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540053","","","","","","1","","","PG0197" "PG0181.1","236760","236443","318","GTGAAAGTAGTTGTAAATCCCCCTTGCGGAGCTACTTGCACGAGCTCCTCAAGGGTGGTTATGCCTTATCCTACGGATGAGGACATAATTATCCCCGGCGTTCTGCATAAATTAAAGAAGACCTTTGCACGGCAATTGGCGTGCAAAGGTCTCTTTATATCTGTACAGACACTGAAAAATCAGTCAATTGACAATGAAATCTCCCGGAAAATGCCGTGCGACAGTCTCATCTATCGGTTTAACAGCTCGCACGGAATCTCCCACTCCCCGAACCTGCCATCCGACACAGAGCTGATGGCATCTTCCATCAATAGACCA","","","11626","VKVVVNPPCGATCTSSSRVVMPYPTDEDIIIPGVLHKLKKTFARQLACKGLFISVQTLKNQSIDNEISRKMPCDSLIYRFNSSHGISHSPNLPSDTELMASSINRP","","NO TIGR ID corresponds to this gene.","hypothetical protein","Periplasm, Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Wed Mar 7 13:34:13 MST 2001","","Mon Feb 26 17:25:48 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","PG0181.1 is paralogous to PG1250, a hypothetical protein. Residues 51-106 are 85% similar to PG1250. Similarities are also seen to PG0078, a hypothetical protein.","Wed Mar 7 13:34:13 MST 2001","Mon Feb 26 17:25:48 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Mar 7 13:34:13 MST 2001","","","","","","","1","","","" "PG0182","237022","237558","537","ATGCGTTGGTTCATACTTTGTCTCCGCAAATATGTAGACTTCAAGGGCCGTGCCCGTCGCAAAGAGTTCTGGCTCTTCACCCTGTTTTATCTCATTGCCTTGGTTATACCGCCTGCAGTAATCATCCCTATTGCTGTCATTTATCGCCATACCATCGATATAGCTCTTTGTATAAGGATATGTGTAGTCGTGGAAATACTGGTAATTTTTTCTCTGTTGCTACCGGCTTATGCCGTAACGGTCAGGCGTCTGCATGATACGAATAGAAGCGGCCTATGGGTTATTGCGTCGATTGTCCCGAGGGTTTTAGCAGAAGGTTTAGGTGTAATTTTCGGTCAGAAATGGCTCATTCAGATTGCCGAAGGAGAGTTTCCGACCTTGTTATTGATCAATATGTTCCTTCTCCTTATCGATCTGTGTGTCTCCATCCTTATTTTGGTCATGATGTGTGAAAGAGGTACAGAAGGCGAAAATCGCTTCGGTCCCGATCCGCTATCGGATGGCAGAGAAGTGCTTATGGAGCCTGAGCCGGGGAAA","8.10","2.24","20436","MRWFILCLRKYVDFKGRARRKEFWLFTLFYLIALVIPPAVIIPIAVIYRHTIDIALCIRICVVVEILVIFSLLLPAYAVTVRRLHDTNRSGLWVIASIVPRVLAEGLGVIFGQKWLIQIAEGEFPTLLLINMFLLLIDLCVSILILVMMCERGTEGENRFGPDPLSDGREVLMEPEPGK","236866 237558","TIGR ID: PG0198","conserved hypothetical protein (possible cytochrome)","Inner membrane, Cytoplasm","Several weak hits in gapped BLAST; e.g. residues 1-102 are 39% similar to gb|AAG03952.1|AE004492_11 conserved hypothetical protein of Pseudomonas aeruginosa, residues 1-164 are 30% similar to gb|AAG58237.1|AE005540_2 putative cytochrome of Escherichia coli, residues 14-163 are 33% similar to gb|AAG58236.1|AE005540_1 hypothetical protein of Escherichia coli.","
InterPro
IPR002355
Binding_site
Multicopper oxidase, copper-binding site
PS00079\"[91-111]?MULTICOPPER_OXIDASE1
InterPro
IPR008523
Family
Protein of unknown function DUF805
PF05656\"[10-166]TDUF805


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 1-100 are 35% similar to a (PROTEIN EXUR-TDCC INTERGENIC REGION TRANSMEMBRANE CNRZ) protein domain (PD031314) which is seen in YHAI_ECOLI.Residues 14-163 are 32% similar to a (HYPOTHETICAL 16.5 KD PROTEIN) protein domain (PD088968) which is seen in YIIR_ECOLI.","","Wed Jun 13 08:08:47 MDT 2001","","Wed Jun 13 08:08:47 MDT 2001","Wed Jun 13 08:08:47 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Jun 13 08:08:47 MDT 2001","Wed Jun 13 08:08:47 MDT 2001","","","Fri Apr 6 12:38:40 MDT 2001","Wed Jun 13 14:02:16 MDT 2001","Wed Mar 7 13:41:42 MST 2001","","Wed Mar 7 13:41:42 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 7 13:41:42 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 10 to 166 (E-value = 8.2e-29) place PG0182 in the DUF805 family which is described as Protein of unknown function (DUF805) (PF05656)","Wed Mar 7 13:41:42 MST 2001","34540054","","","","","","1","","","PG0198" "PG0183","238227","237517","711","ATGACCCCGTTCCGTAAGAAGTTTTCTTCACTTAATTCCTCTTATATGGTATTTCTCGACATTCATACTCATTCTGCAGCTCGCAACGATAGCGAGATCATTCGAGTTCGGAATCTACGACCGAATGAAACCATATCTCCGAATACTTTTTGCTCCATCGGCATTCATCCGTGGAGTGTACCAGAGAATTATAGCGGAGAGTTGCTTGCTGTCCGTGAAGGATTGAATCACGACGAGGTTGTTGCTCTGGGAGAATGTGGGCTGGATAAGGTGTGCAGTACACCGTATGAAAAGCAACGAAAAGCTTTCCTCGATCAAATTGATCTGAGCGAAGAGTTTGGCATGCCGGTGCTACTGCACATAGTACGAGCATGGGATGATCTTTTGGCGATCAAAAAACAGGTAAAGCCTTCACAGCCGTGGATCGTTCATGGTTTTCGGAGTAGTGAAGAACAAGCCCGGCAGCTTATTCGAGCAGGTCTGTTTCTGAGCTTCGGTTGTCGGTTCAGTCCCGAAGCACTCCGTCTGTCTTATGAATCCGGTATCGCTCTGCTGGAAACCGATGAGAACATCAAGGATATTCGGGAGTGGTATTATGAGGCAGCCGAGTGTATCGGCTGTTCTTTGCAAGAGCTTCAACGTCATACTCTTGCACTGGGGGCAGGCCTATTTCCCCGGCTCAGGCTCCATAAGCACTTCTCTGCCATCCGA","7.00","0.00","27057","MTPFRKKFSSLNSSYMVFLDIHTHSAARNDSEIIRVRNLRPNETISPNTFCSIGIHPWSVPENYSGELLAVREGLNHDEVVALGECGLDKVCSTPYEKQRKAFLDQIDLSEEFGMPVLLHIVRAWDDLLAIKKQVKPSQPWIVHGFRSSEEQARQLIRAGLFLSFGCRFSPEALRLSYESGIALLETDENIKDIREWYYEAAECIGCSLQELQRHTLALGAGLFPRLRLHKHFSAIR","238239 237517","TIGR ID: PG0199","conserved hypothetical protein","Cytoplasm","Numerous weak hits in gapped BLAST; e.g. residues 39-188 are 35% similar to gbAAF82990.1AE003872_1 conserved hypothetical protein of Xylella fastidiosa, residues 13-165 are 29% similar to gbAAC66570.1 conserved hypothetical protein of Borrelia burgdorferi, residues 46-166 are 34% similar to gbAAD35749.1AE001739_12 conserved hypothetical protein of Thermotoga maritima.","
InterPro
IPR001130
Family
TatD-related deoxyribonuclease
PTHR10060\"[47-166]TTatD_DNase
PF01026\"[16-225]TTatD_DNase
InterPro
IPR012278
Family
Mg-dependent DNase, TatD
PIRSF005902\"[18-228]TDNase_TatD
noIPR
unintegrated
unintegrated
G3DSA:3.20.20.140\"[6-229]TG3DSA:3.20.20.140
SSF51556\"[14-225]TSSF51556


","BeTs to 13 clades of COG0084COG name: Predicted hydrolases of PHP superfamilyFunctional Class: RThe phylogenetic pattern of COG0084 is -mtkYqvcEbrHujgpoLinxNumber of proteins in this genome belonging to this COG is 2","***** IPB001130 (Uncharacterized protein family UPF0006) with a combined E-value of 6.9e-15. IPB001130A 18-26 IPB001130B 52-57 IPB001130C 80-91 IPB001130D 99-122","Residues 48-165 are 31% similar to a (PROTEIN CONSERVED INTERGENIC REGION HYDROLASE PHP) protein domain (PD002155) which is seen in O51212_BORBU.","","Wed Jun 13 08:11:37 MDT 2001","","Wed Jun 13 14:04:35 MDT 2001","Wed Jun 13 14:04:35 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Jun 13 14:04:35 MDT 2001","Wed Jun 13 14:04:35 MDT 2001","","","Wed Mar 7 14:13:31 MST 2001","Tue Jul 13 14:16:55 2004","Wed Mar 7 14:13:31 MST 2001","Tue Jul 13 14:16:55 2004","Tue Jul 13 14:16:55 2004","yes","Fri Feb 20 15:41:32 MST 1998","Residues 52-157 are 29% similar to PG0704, a conserved hypothetical protein (possible PHP hydrolase).","Wed Jun 13 14:06:33 MDT 2001","Wed Mar 7 14:13:31 MST 2001","-55% similar to PDB:1J6O Crystal structure of TatD-related deoxyribonuclease (TM0667) from Thermotoga maritima at 1.8 A resolution (E_value = 1.5E_12);","","","Residues 16 to 226 (E-value = 1e-16) place PG0183 in the TatD_DNase family which is described as TatD related DNase (PF01026)","Wed Mar 7 14:13:31 MST 2001","34540055","","","","","","1","","","PG0199" "PG0183.1","238441","238214","228","ATGCGACTGATCAAGGCTTTTCTCGTGCAACTCTTACTGCTCCCCATTTTCTTCTACAAGCGGTTTATATCGCCGCTTACACCGCCTTCATGCCGGTTTACCCCCTCATGTTCGTCCTATGCCATCGAAGCCTTACGTAAATATGGCCCGGGCAAAGGACTATTGCTGAGCATCAAGCGTATTCTCCGCTGTCACCCGTGGGGTGGAAGTGGCTATGACCCCGTTCCG","0.00","0.00","8580","MRLIKAFLVQLLLLPIFFYKRFISPLTPPSCRFTPSCSSYAIEALRKYGPGKGLLLSIKRILRCHPWGGSGYDPVP","","TIGR ID: PG0200","conserved hypothetical protein","Periplasm, Cytoplasm","Numerous significant hits to conserved hypothetical prokaryotic proteins, including residues 3-76 are 58% similar to gi|14247567|dbj|BAB57957.1 in Staphylococcus aureus, residues 8-76 are 63% similar to gi|7379288|emb|CAB83842.1 in N. meningitidis and residues 10-76 are 595 similar to gi|4982027|gb|AAD36530.1|AE001797_10 in Thermotoga maritima. Lower, but still significant, similarity is shown to alpha-hemolysin proteins, in gi|1005414|gb|AAB81225.1 in Aeromonas hydrophila and gi|10175450|dbj|BAB06548 in Bacillus halodurans.","
InterPro
IPR002696
Family
Protein of unknown function DUF37
PD004225\"[12-76]TDUF37
PF01809\"[8-75]TDUF37
TIGR00278\"[12-76]TDUF37


","BeTs to 9 clades of COG0759COG name: Uncharacterized ACRFunctional Class: SThe phylogenetic pattern of COG0593 is -----qvcebrhuj--o-in-Number of proteins in this genome belonging to this COG is 1","","","Mon Jul 9 14:10:43 MDT 2001","Mon Jul 9 14:10:43 MDT 2001","Mon Jul 9 14:10:43 MDT 2001","Mon Jul 9 14:10:43 MDT 2001","Mon Jul 9 14:11:08 MDT 2001","Mon Jul 9 14:10:43 MDT 2001","Mon Jul 9 14:10:43 MDT 2001","Mon Jul 9 14:11:08 MDT 2001","Mon Jul 9 14:11:08 MDT 2001","Mon Jul 9 14:10:43 MDT 2001","Mon Jul 9 14:10:43 MDT 2001","Mon Jul 9 14:37:15 MDT 2001","Mon Jul 9 14:33:04 MDT 2001","Mon Nov 19 18:47:52 2001","Mon Jul 9 14:10:43 MDT 2001","Mon Jul 9 14:10:43 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Mon Jul 9 14:16:59 MDT 2001","Mon Jul 9 14:10:43 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 8 to 75 (E-value = 5.6e-33) place PG0183.1 in the DUF37 family which is described as Domain of unknown function DUF37 (PF01809)","Mon Jul 9 14:10:43 MDT 2001","34540056","","","","","","1","Mon Jul 9 14:10:43 MDT 2001","","PG0200" "PG0184","238860","238450","411","ATGACCTCTCCGCCTACATTCGGCCTATCCAAAAGCGAACGCCTCTATCTTCGCGATGAAATCAATACGGTCTTTGGCGAAGGCAAGGCGTTTGTCGTTTATCCTCTACGCGTAGTCTACCGTCTGGGATCGGAGCATCGAGTTGCATATTCCTCCATGCTGGTAAGCGTAGCAAAGAAAAGGTTTAGGCGAGCCGTGAAGCGCAATAGGGTCAAGCGTTTGGTCAGGGAGGCTTATCGGCTCAACAAACACCTCCTGAACGATGTCCTCCAAGAGAGACAGATCTATGCTACTATTGCATTTATGGTAGTATCGGATGAACTTCCTGACTTTCGTACAGTGGAGAGAGCGATGCAAAAGAGTCTGATCAGAATTGCCGGAAATGTACCTTCATCGGCTTTGAAAAACGAG","11.30","13.47","15844","MTSPPTFGLSKSERLYLRDEINTVFGEGKAFVVYPLRVVYRLGSEHRVAYSSMLVSVAKKRFRRAVKRNRVKRLVREAYRLNKHLLNDVLQERQIYATIAFMVVSDELPDFRTVERAMQKSLIRIAGNVPSSALKNE","238860 238450","TIGR ID: PG0201","ribonuclease P protein component","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR000100
Family
Bacterial ribonuclease P protein
PF00825\"[55-87]TRibonuclease_P
TIGR00188\"[9-87]TrnpA
PS00648\"[62-76]TRIBONUCLEASE_P
InterPro
IPR014721
Domain
Ribosomal protein S5 domain 2-type fold
G3DSA:3.30.230.10\"[4-112]TRibosomal_S5_D2-type_fold
noIPR
unintegrated
unintegrated
SSF54211\"[13-125]TSSF54211


","No hit to the COGs database.","***** IPB000100 (Bacterial ribonuclease P protein) with a combined E-value of 5.3e-11. IPB000100 57-94","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Jul 25 13:11:40 2008","","Wed Mar 7 14:17:19 MST 2001","Wed Mar 7 14:17:19 MST 2001","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Jul 25 13:11:40 2008","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Mar 7 14:17:19 MST 2001","34540057","","","","","","1","","","PG0201" "PG0185","239603","238860","744","ATGGCAGTAAAAGTAAAGAAGATACTCATTTCACAGCCACAACCCGTAGCGGGTAGGTCGCCTTATTACGATATTGCTCAGAAACATGGCTGTGAGGTCGTGTTTCGTCCTTTCATCCAAGTAGAGTCCGTCAGTGCGAGAGAATTTCGCAATCAGAAAGTGAATATTCTAGACCATTCGGCCATCATCTTCACTGCACGTACAGCTATCGACCATTTTTTCAGTTTGTGTGAAGAATTGAGAGTCACCGTACCTGAGACGATGAAGTACTTCTGCGTAAGTGAATCGGTAGCAGTGTACCTGCAGAAGCATATCGTCTATCGCAAACGGAAGATTTTTTTCGGAGCGACGGGCAAACTGGAAGATCTCCTGACGGTTATCAGCAAACATAACAAAGAAACCTACTTCGTCCCCTTGGCAGAAGAGCATAAGCATGATTTGCTGGATATGCTTACGGCCAAAAAGGTAAGTTTCAGTCCGGCCATTATGTATCGCACGGTCAGCAATGATTTCGGACCGGATGAGGCATTGGACCATGATATGATATTATTTTTCAGCCCTTCGGGTATTACGGCCTTGCTGAAAAACTTCCCCAAATTCGAGCAGGGTAAGACCAAGATCGGGGCTTTCGGCCCCACGACAGCCAAGGCCGTCGAAGAAGCAGGTCTGCGGCTCGATCTGTCTGCGCCGACCGAGCAATATCCTTCTATGGCTATGGCATTAGAGGATTACCTCAACGGGAAA","8.40","3.79","27987","MAVKVKKILISQPQPVAGRSPYYDIAQKHGCEVVFRPFIQVESVSAREFRNQKVNILDHSAIIFTARTAIDHFFSLCEELRVTVPETMKYFCVSESVAVYLQKHIVYRKRKIFFGATGKLEDLLTVISKHNKETYFVPLAEEHKHDLLDMLTAKKVSFSPAIMYRTVSNDFGPDEALDHDMILFFSPSGITALLKNFPKFEQGKTKIGAFGPTTAKAVEEAGLRLDLSAPTEQYPSMAMALEDYLNGK","239603 238860","TIGR ID: PG0202","uroporphyrinogen-III synthase","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR003754
Domain
Tetrapyrrole biosynthesis, uroporphyrinogen III synthase
PF02602\"[17-240]THEM4
SSF69618\"[5-246]THEM4_synth
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.10090\"[180-245]TG3DSA:3.40.50.10090
PTHR12390\"[180-248]TPTHR12390


","BeTs to 5 clades of COG1587COG name: Uroporphyrinogen-III synthase HemDFunctional Class: HThe phylogenetic pattern of COG1587 is amt-yq-ceBR-uj----in-Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Sep 10 13:43:48 2004","","Wed Mar 7 14:19:34 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 7 14:19:34 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Mar 7 14:19:34 MST 2001","34540058","","","","","","1","","","PG0202" "PG0186","240301","239597","705","ATGACAGGACTACCTTTTTGGACCGGACAGATCATATACGACGTATTGATCAGCCTGATACTCTTGCTATTCAGTGCCCTCGGTGTGGTCGCAACCCGTATTCCACACTTTTTCCTCCGCTTGTCCAATGCCGTTTTGTATGGTCAGGAGCGAGTCTTTCTGGTCCGTATGCCACGCTATATCAGTTATCGGCTTTTTGTCTTTATCGGCCGTATCCAAAGCACATTGTTGCTCTCGATCTGTTGTTTCCTCATATTGGACGACAAGGGGCAACTCACCGATTTCGATTTGTGGGAAAGCCTTTTTTTCTTGGCTTTGCTCTTCTTCCTGTTCTGTTTTGTCTTTTGGCTGTGGAGGATGTTTTATGCCTTGTGGTGCTATTTCTTTGCCGATCGTGAGACTAAGATGATCTGGAGAGGGGGTTATGCGTTGCTCGAATGGATGTGGGGGATGCTCCTTTTTCCCGTTGCGGTCATCTATCTTTATATGCCACAATTATATTGGCTAAGCTACTTGTTACCAGCTATTTTCGTGCTGTGGAGATTAGTGCTTATCGCTAAAACGATACGATTCTTCTCGATCAGGGAAGTAGGTTTTTTCCACCTTTCTTTGTACCTTTGTGCCCACGAAATTTTACCGTTGGTTTACTTGATTGCCTTATTGGAGTGGTCGGTAAACAATAAAGAGATAATGGCTCTATGGCAG","8.30","3.47","28189","MTGLPFWTGQIIYDVLISLILLLFSALGVVATRIPHFFLRLSNAVLYGQERVFLVRMPRYISYRLFVFIGRIQSTLLLSICCFLILDDKGQLTDFDLWESLFFLALLFFLFCFVFWLWRMFYALWCYFFADRETKMIWRGGYALLEWMWGMLLFPVAVIYLYMPQLYWLSYLLPAIFVLWRLVLIAKTIRFFSIREVGFFHLSLYLCAHEILPLVYLIALLEWSVNNKEIMALWQ","240301 239597","TIGR ID: PG0203","conserved hypothetical protein","Inner membrane, Cytoplasm","Its nearest neighbor in the NR database is gi:29348634 from Bacteroides thetaiotaomicron VPI-5482.","
noIPR
unintegrated
unintegrated
signalp\"[1-31]?signal-peptide
tmhmm\"[10-30]?\"[66-86]?\"[100-118]?\"[138-160]?\"[166-184]?\"[199-219]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Mar 1 13:52:28 2005","Tue Mar 1 13:52:28 2005","Wed Mar 7 14:20:29 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 7 14:20:29 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Mar 7 14:20:29 MST 2001","34540059","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Tue Mar 1 13:52:28 2005","","1","","","PG0203" "PG0187","240597","240355","243","TTGAGACAGGATAAATCGGAAAAACAGATGGACAGGAACAAAAGACGTAAGATACTGGCGCATGCGATTGCATCCTTGATCCTTGGATTGCTTGTCTTTTTCATTGGCCTCATCCTGATTTGGGCAGGCCTTTTGAGTAGCAAGATGGAGGCTCTCTGGATCGCTATCGGGGCCGTAGGTGCCGGCCTTATAGGAGAGCTGATTCGGAAGAAGAACAATCGCAACGACGCTTCGGGCAAATCC","11.40","8.22","8894","LRQDKSEKQMDRNKRRKILAHAIASLILGLLVFFIGLILIWAGLLSSKMEALWIAIGAVGAGLIGELIRKKNNRNDASGKS","240597 240355","TIGR ID: PG0204","hypothetical protein","Inner membrane, Extracellular","No significant hit found in gapped BLAST with E value less than e-04.","
noIPR
unintegrated
unintegrated
signalp\"[1-42]?signal-peptide
tmhmm\"[22-44]?\"[50-68]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Mar 7 14:23:55 MST 2001","","Wed Mar 7 14:23:55 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 7 14:23:55 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Mar 7 14:23:55 MST 2001","34540060","","","","","","1","","","PG0204" "PG0188","242183","240606","1578","ATGAGTGCTTACACGGAAGAAATCAACGCTCGGCGTACTTTCGCCATTATTAGTCATCCGGATGCGGGGAAAACGACTCTGACGGAAAAATTCTTGCTCTTCGGAGGCGCCATTCATGTGGCAGGAGCGGTCAAAAGCAACAAGATAAAGAAAACGGCTACCAGCGACTGGATGGAGATAGAGCGTCAGCGTGGTATATCGGTGGCAACTTCCGTCATGGGATTCAACTACAAGGACTATAAAATCAACATCCTCGATACGCCCGGTCACCAAGATTTTGCGGAAGATACTTTCCGTACGCTTACTGCTGTGGACAGTGTGATCATCGTCATCGACTGCGCCAAGGGGGTCGAGACGCAGACGCGCAAGCTGATGGAAGTTTGTCGTATGCGCAAGACTCCCGTTATCGTCTTCATCAATAAGCTGGACCGTGAGGGACAGGATCCCTTCGATCTGCTGGACGAGGTGGAGGAAGAGCTTCAGATCCGTGTGCGGCCACTCTCCTGGCCTATCGATATGGGTGCCCGATTCAAAGGCGTGTACAACATATACGAGGAGGAGCTGAATCTCTTTACCCCGGACAAGCAGCGTATCACGGAGAGCGTGGCTTTCAAGGATCTGAGTTCGCCCGAATTGGAACAATATATCGGAGACACTCAAGCTGAGAAGTTGCGTGCGGACATCGAATTGATCGATGGTGTTTATCAGCCTTTCGACAAAGAGGAATATCTGGCCGGACAGCTTGCTCCGGTGTTTTTCGGTTCGGCACTCAACAACTTCGGTGTGCAGGAGCTGCTGAACTGCTTCGTCGAGATTGCCCCTTCTCCCCAGCCGGTGGCTGCAGTGGAGAGGAAAGTGGATCCGCACGAGGAGGAATTTACGGGTTTTGTTTTCAAGATACATGCCAACATGGATCCCAACCATCGCAGCTGTATTGCTTTCGTCAAGATTTGTTCCGGTCGGTTCGAACGAAATACGAACTACAAGCATATCCGCCTCGGCAAACAGTTCCGATTCAGCAGTCCTACGGCTTTTATGGCGCAGCGCAAGGAGACGGTGGATGAAGCCTATGCCGGTGATATTATCGGTCTGCCCGATACCGGCAATTTTCAGATTGGAGATACGCTGACAGCCGGCGAAGAGCTTCATTTCCGCGGTTTGCCAAGCTTCTCGCCGGAGCTATTCAAGTACATTGAAAATCAGGATCCGATGAAAGCCAAGCAACTGGCCAAAGGGATCGACCAGCTCATGGGCGAAGGGGTGGCACAGCTATTCACCAATCAGTTCAACGGGCGCAAGATTATCGGGACCGTGGGGCAGCTACAGTTCGAAGTGATCCAATACCGTCTGCTGCATGAATACGGAGCGCAGTGTCGTTGGGAACCGATCAGCCTGTACAAAGCCTGCTGGATAGACAGTGACAAGCCGGAGGCTTTGGAGGCATTCAAGAAGCGAAAAGCGCAGTATATGGCAAAAGATATTGCCGGGCGAGATGTATATTTGGCCGACTCCGGCTATGTGCTGAATATGGCGCAGCAGGATTTCCCCGATATACGTTTCCACTTCACATCCGAATTT","5.20","-12.86","59812","MSAYTEEINARRTFAIISHPDAGKTTLTEKFLLFGGAIHVAGAVKSNKIKKTATSDWMEIERQRGISVATSVMGFNYKDYKINILDTPGHQDFAEDTFRTLTAVDSVIIVIDCAKGVETQTRKLMEVCRMRKTPVIVFINKLDREGQDPFDLLDEVEEELQIRVRPLSWPIDMGARFKGVYNIYEEELNLFTPDKQRITESVAFKDLSSPELEQYIGDTQAEKLRADIELIDGVYQPFDKEEYLAGQLAPVFFGSALNNFGVQELLNCFVEIAPSPQPVAAVERKVDPHEEEFTGFVFKIHANMDPNHRSCIAFVKICSGRFERNTNYKHIRLGKQFRFSSPTAFMAQRKETVDEAYAGDIIGLPDTGNFQIGDTLTAGEELHFRGLPSFSPELFKYIENQDPMKAKQLAKGIDQLMGEGVAQLFTNQFNGRKIIGTVGQLQFEVIQYRLLHEYGAQCRWEPISLYKACWIDSDKPEALEAFKKRKAQYMAKDIAGRDVYLADSGYVLNMAQQDFPDIRFHFTSEF","242183 240606","TIGR ID: PG0205","translation elongation factor G protein","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 6-525 are 52% similar to emb|CAB84117.1| putative peptide chain release factor 3 of Neisseria meningitidis Z2491, residues 4-252 are 51% similar to gb|AAF93825.1| peptide chain release factor 3 of Vibrio cholerae, residues 1-525 are 51% similar to pir||C82839 translation releasing factor RF-3 XF0174 [imported] of Xylella fastidiosa.This sequence is similar to BT1729.","
InterPro
IPR000795
Domain
Protein synthesis factor, GTP-binding
PR00315\"[13-26]T\"[63-71]T\"[83-93]T\"[99-110]T\"[135-144]TELONGATNFCT
PF00009\"[9-277]TGTP_EFTU
PS00301\"[56-71]TEFACTOR_GTP
InterPro
IPR004161
Domain
Translation elongation factor EFTu/EF1A, domain 2
PF03144\"[312-377]TGTP_EFTU_D2
InterPro
IPR004548
Family
Peptide chain release factor 3
TIGR00503\"[1-526]TprfC
InterPro
IPR005225
Domain
Small GTP-binding protein domain
TIGR00231\"[9-186]Tsmall_GTP
InterPro
IPR009000
Domain
Translation elongation and initiation factors/Ribosomal, beta-barrel
SSF50447\"[259-387]TTranslat_factor
InterPro
IPR009022
Domain
Elongation factor G, III and V
SSF54980\"[387-462]TEFG_III_V
noIPR
unintegrated
unintegrated
G3DSA:2.40.30.10\"[287-381]TG3DSA:2.40.30.10
G3DSA:3.40.50.300\"[6-279]TG3DSA:3.40.50.300
PTHR23115\"[2-162]T\"[235-409]TPTHR23115
PTHR23115:SF13\"[2-162]T\"[235-409]TPTHR23115:SF13
SSF52540\"[3-290]TSSF52540


","BeTs to 17 clades of COG0480COG name: Translation elongation and release factors (GTPases)Functional Class: JThe phylogenetic pattern of COG0480 is amtkYqVCEbRHujgpOLinxNumber of proteins in this genome belonging to this COG is 3","***** IPB000795 (GTP-binding elongation factor) with a combined E-value of 1e-17. IPB000795A 13-28 IPB000795B 85-116 IPB000795C 120-144***** IPB000178 (Initiation factor 2) with a combined E-value of 1.3e-06. IPB000178C 82-128","Residues 246-360 are 51% similar to a (PROTEIN GTP-BINDING FACTOR ELONGATION BIOSYNTHESIS G) protein domain (PD000509) which is seen in RF3_SYNY3.Residues 161-233 are 36% similar to a (PEPTIDE CHAIN RELEASE FACTOR) protein domain (PD013442) which is seen in RF3_SALTY.Residues 361-525 are 42% similar to a (PEPTIDE CHAIN RELEASE FACTOR) protein domain (PD013443) which is seen in RF3_HAEIN.Residues 6-66 are 68% similar to a (PROTEIN GTP-BINDING FACTOR ELONGATION BIOSYNTHESIS TU) protein domain (PD000122) which is seen in RF3_HAEIN.Residues 23-160 are 30% similar to a (PROTEIN GTP-BINDING LIPOPROTEIN PRENYLATION RAS-RELATED) protein domain (PD000015) which is seen in LEPA_TREPA.Residues 68-160 are 67% similar to a (PROTEIN GTP-BINDING FACTOR BIOSYNTHESIS ELONGATION TU) protein domain (PD000134) which is seen in O86490_STAAU.Residues 66-281 are 26% similar to a (ELONGATION FACTOR EF-G ELONGATION) protein domain (PD125682) which is seen in Q55421_SYNY3.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Jan 11 11:19:47 2001","Mon Dec 8 15:52:16 2003","Thu Jan 11 11:19:47 2001","Thu Feb 22 19:19:14 MST 2001","Thu Feb 22 19:19:14 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 3-485 are 27% similar to PG1692, a predicted elongation factor G protein. Similarities are also seen to PG0832, PG0553, PG1097, PG0353, three of which are predicted elongation factor proteins.","Mon Apr 2 12:59:06 MDT 2001","Thu Feb 22 19:19:14 MST 2001","-46% similar to PDB:1DAR ELONGATION FACTOR G IN COMPLEX WITH GDP (E_value = 1.3E_42);-46% similar to PDB:1ELO ELONGATION FACTOR G WITHOUT NUCLEOTIDE (E_value = 1.3E_42);-46% similar to PDB:1FNM STRUCTURE OF THERMUS THERMOPHILUS EF-G H573A (E_value = 1.3E_42);-46% similar to PDB:1KTV Crystal Structure of Elongation Factor G Dimer Without Nucleotide (E_value = 1.3E_42);-46% similar to PDB:1PN6 Domain-wise fitting of the crystal structure of T.thermophilus EF-G into the low resolution map of the release complex.Puromycin.EFG.GDPNP of E.coli 70S ribosome. (E_value = 1.3E_42);","","","Residues 9 to 277 (E-value = 2.1e-61) place PG0188 in the GTP_EFTU family which is described as Elongation factor Tu GTP binding domain (PF00009)","Wed Mar 7 14:30:01 MST 2001","34540061","","","","","","1","","","PG0205" "PG0189","243371","244153","783","ATGGTAAGAAATCCGGAAGAAGTACTCGAACAGACCTACAGCATGGCTGCAAGCAAATATGCCAAGACATGGTATCAGATATTTTGGTTGGGCATCATGGCCGGAGCATACATTGCTATCGGAGGCTTTTTGTCCCTGTTGGTCGGTAAAGGTTTTCCCGAGATGGCCGAAGCCAATCCGGGGTTGGCCAAACTGCTGAGTGGGGCGATGTTCCCCGTCGGCTTGATTCTTGTGGTGCTCACCGGAGCCGAGTTATTCACCAGCAATAATGCCGTACTGATTCCTGCCGCTATCAAAAGTCGCATTCCGCGTCTCTTCCCACTCAAGCTCTGGATGGTGGTCTATGTGGCCAACTTTATCGGTGCTTTCCTTTTTACCTATTTCCTTGTCCATTTGGCCGGCTTCGCCGATGCGGATCCTTGGCATAGTGCCATCGTCCATCTGTCGGAAGACAAAACCTCCCTGCCTTTTCACGTAGCATTTCTTAGGGGAATCGGTGCCAACTGGTTGGTTTGTCTGGCCGTCTGGCTGGGACTTTCGGCTCATGACTTTACGGGCAAAATGTTCGGTATCTGGTGGCCGGTGATGGCATTCGTGGCTATGGGATTCGAACACTCCATTGCCAATATGTTCTATATTCCACTCGGCATACTGCAAGGGGCCTCCGTCAGCTGGGGCAGCTTCGTGATCGACAATCTGCTGCCCGTCACCATCGGAAATATCGTCGGCGGTGCACTCTTTGTCGGCTTCTTCCACGTCCATATATTCGATAGAGGAGGAAAG","7.80","1.86","28522","MVRNPEEVLEQTYSMAASKYAKTWYQIFWLGIMAGAYIAIGGFLSLLVGKGFPEMAEANPGLAKLLSGAMFPVGLILVVLTGAELFTSNNAVLIPAAIKSRIPRLFPLKLWMVVYVANFIGAFLFTYFLVHLAGFADADPWHSAIVHLSEDKTSLPFHVAFLRGIGANWLVCLAVWLGLSAHDFTGKMFGIWWPVMAFVAMGFEHSIANMFYIPLGILQGASVSWGSFVIDNLLPVTIGNIVGGALFVGFFHVHIFDRGGK","243371 244153","TIGR ID: PG0209","probable formate dehydrogenase (formate transporter)","Inner membrane, Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 61-259 are 44% similar to gb|AAA73026.1| formate dehydrogenase of Methanobacterium formicicum, residues 61-256 are 43% similar to sp|Q50568|FDHC_METTF potential formate transporter of Methanobacterium thermoformicicum, residues 62-261 are 45% similar to gb|AAB80864.1| formate dehydrogenase of Bacillus subtilis.","
InterPro
IPR000292
Family
Formate/nitrite transporter
PF01226\"[1-261]TForm_Nir_trans
PS01005\"[79-88]?FORMATE_NITRITE_TP_1
PS01006\"[164-174]?FORMATE_NITRITE_TP_2


","BeTs to 3 clades of COG2116COG name: Formate/nitrite family of transportersFunctional Class: PThe phylogenetic pattern of COG2116 is ----y---EB-h---------Number of proteins in this genome belonging to this COG is 1","***** IPB000292 (Formate and nitrite transporters) with a combined E-value of 7.6e-63. IPB000292A 65-91 IPB000292B 111-129 IPB000292C 171-218 IPB000292D 232-253 IPB000292B 233-251","Residues 61-248 are 45% similar to a (TRANSPORT TRANSMEMBRANE TRANSPORTER FORMATE INNER) protein domain (PD006963) which is seen in FDHC_METTF.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Mar 7 14:46:03 MST 2001","Wed Mar 7 14:46:03 MST 2001","Wed Mar 7 14:46:03 MST 2001","Wed Mar 7 14:46:03 MST 2001","Wed Mar 7 14:46:03 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 7 14:46:03 MST 2001","-53% similar to PDB:2A65 Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters (E_value = );","","","Residues 1 to 261 (E-value = 1.2e-79) place PG0189 in the Form_Nir_trans family which is described as Formate/nitrite transporter (PF01226)","Wed Mar 7 14:46:03 MST 2001","34540062","","","","","","1","","","PG0209" "PG0190","246059","244254","1806","ATGATCCTACTCTTCGGCGGTACTACGGAAGGCCGTGCCGCAGCTCGCGTGCTGGATGAAGCGGGAAGTCCGTTTTTCTACTCCACCAAAGGCAATCTGCAAGAGATCCAGAGTAGCCACGGCCATCGTCTGACAGGAGCCATGACGGTTGCCGACATGGTTTCGTTTTGTCGGAAAGAAGAGATCCGACTGATCGTGGACGCCGCTCATCCTTTCGCCGAAGAATTGCACGCTTCAGTGGCAGAAGCCTCTGAACAAACAGGTATCCCCGTAGTAAGATACGAGAGACAATACCCTCCACGCGAAGAAGGTATCGTCTGGTGTGCAAACTACGATACGGCTGCCGAGCGGATGCTTGGCGATGGCGTGCAGCGTCTGCTGATGCTCACAGGAGTGAATACGATCCCCAAGCTGGCTGCTTTCTGGAAAGAGCGCACCACCTTTTGCCGCATATTGAAGCGAGACGAATCGGTTGCTTTGGCAGAGAAGAACGGCTTTCCTGCGGAGCGCATCGTTTTCTTCGAACCGCATGCGGACGAGGAGCTGATGCAAGCCGTTCGCCCCGATGCCATTATCACAAAAGAAAGCGGAGAGAGCGGTTACTTCCGAGAAAAGATAGAAGCTGCCCGACGGATGGGCATCCGTATATATGCCGTCGTACGTCCCCCTTTGCCTCCTTCATTCATTCCCGTAGGCGGGCCTGTCGGTTTGAGACGGGCGGTAGAACGCCTCGTGCCGGGATTCTTTTCACTCCGAAGCGGATTCACTACCGGCACCACAGCTACCGCTGCAGTAGTAGCAGCCATGTACCGATTGATGGGGCTTGGCTCTCTCGCCGAAGCTCCCGTAGAATTGCCTTCGGGCGAAATAGTCAGTCTGCCCATAGCGGAAATTCGAGAGGAAGAAGATGCTGTCGTATCCGCAGTCCTGAAAGATGCAGGTGATGATCCGGATGTGACCAATGGCATGGCGGTATGCGCTACGATCAGGCTCAATCCCGAACATGAGGAAGTCCGCTTCCTGCAGGGTGAAGGGGTGGGGGTAGTGACGCTCCCCGGCCTCGGTCTGGAGGTCGGAGGTCCGGCTATCAACCTCGTACCTCGACGAATGATGACAGCAGAGGTACGCCGACTCTATGCGCAGGGAGGTGTGGATATTACGATTAGCGTACCCGAAGGCCGAGAGGCTGCTACCCAGACATTCAATCCCCGACTCGGCATACGGGACGGCATCTCTATTATCGGAACATCGGGAGTCGTGAAACCTTTTTCGGCCGAAGCGTTCGTTGGTGCCATCCGTAAGCAAGTGGGTATTGCCACCGCCTTGGGAGCCAATCATATCGTCCTCAATTCGGGAGCCAAGAGTGAGCGTTATGTAAAAGGAGCCTATCCGGCACTCATTCCACAGGCCTTTGTGCAGTATGGCAATTTCGTCGGCGAATCACTCAGTTGTGTAGCTTCCTTCCCTTCTGTCCGTTCGGTAACGGTAGGAATCATGCTCGGCAAAGCAGTGAAACTCGCCGAAGGCTATCTGGATACGCACAGTAAAAAGGTAGTGATGAATCGGGATTTCCTGCACGAACTGGCTCGTCAGGCAGGTTGTTCGGAAGACATCCATGCCATAATAGACAGCCTGAATTTGGCTCGTGAGCTATGGACTATGCCGAGTGCGGAGGACAGCGATCGACTGCTACGAAAGATTGCCGAACGATCTTGGGAAACTTGCCGCCCATCGGTACCATCGGCCGAATTAGAACTCCTGCTGATCGATGAGTCCGGAGCGATTCGTTTTCGTATCGGTGGAGAA","5.70","-8.85","65221","MILLFGGTTEGRAAARVLDEAGSPFFYSTKGNLQEIQSSHGHRLTGAMTVADMVSFCRKEEIRLIVDAAHPFAEELHASVAEASEQTGIPVVRYERQYPPREEGIVWCANYDTAAERMLGDGVQRLLMLTGVNTIPKLAAFWKERTTFCRILKRDESVALAEKNGFPAERIVFFEPHADEELMQAVRPDAIITKESGESGYFREKIEAARRMGIRIYAVVRPPLPPSFIPVGGPVGLRRAVERLVPGFFSLRSGFTTGTTATAAVVAAMYRLMGLGSLAEAPVELPSGEIVSLPIAEIREEEDAVVSAVLKDAGDDPDVTNGMAVCATIRLNPEHEEVRFLQGEGVGVVTLPGLGLEVGGPAINLVPRRMMTAEVRRLYAQGGVDITISVPEGREAATQTFNPRLGIRDGISIIGTSGVVKPFSAEAFVGAIRKQVGIATALGANHIVLNSGAKSERYVKGAYPALIPQAFVQYGNFVGESLSCVASFPSVRSVTVGIMLGKAVKLAEGYLDTHSKKVVMNRDFLHELARQAGCSEDIHAIIDSLNLARELWTMPSAEDSDRLLRKIAERSWETCRPSVPSAELELLLIDESGAIRFRIGGE","246059 244254","The gapped BLAST hits tend to correspond to residues 1-230 and residues 250-580.Roper et al. (2000) assign a role in cobalamin biosynthesis to this protein, hence the gene is denoted cbiD/J. See in this regard PG193 (cbiC), PG0192 (cbiET), PG0191 (cbiGF), PG0602 (cbiK), PG1040 (cbiA), PG1038 (cbiP), PG1037 (cobD), PG1036 (cobD/cbiB), PG0631 (cobU), PG0632 (cobT), PG0633 (cobS), PG0434 (hemN/F), PG0438 (cbiL), PG0112 (hemH), PG0193 (cbiH).TIGR ID: PG0210","cobalamin biosynthesis protein","Cytoplasm, Inner membrane","Numerous significant hits to cobalamin biosynthesis protein in gapped BLAST; e.g. residues 251-569 are 30% similar to pir||T44687 cobalamin biosynthesis protein of Bacillus megaterium, residues 251-516 are 36% similar to gb|AAG06296.1|AE004717_2 cobalamin biosynthetic protein CbiD of Pseudomonas aeruginosa, residues 254-516 are 29% similar to gb|AAB98004.1| cobalamin biosynthesis protein of Methanococcus jannaschii. ","
InterPro
IPR002748
Family
Cobalamin (vitamin B12) biosynthesis CbiD
PF01888\"[257-547]TCbiD
TIGR00312\"[258-602]TcbiD
InterPro
IPR003723
Family
Cobalamin (vitamin B12) biosynthesis CobK/CbiJ, precorrin-6x reductase
PF02571\"[1-247]TCbiJ
PS51014\"[1-246]TCOBK_CBIJ
noIPR
unintegrated
unintegrated
SSF111342\"[214-528]TSSF111342


","BeTs to 3 clades of COG1903COG name: Cobalamin biosynthesis protein CbiDFunctional Class: HThe phylogenetic pattern of COG1903 is amt----c-------------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 2-224 are 29% similar to a (PRECORRIN-6X REDUCTASE OXIDOREDUCTASE) protein domain (PD009811) which is seen in O87691_BACME.Residues 251-509 are 31% similar to a (PROTEIN CBID COBALAMIN BIOSYNTHESIS) protein domain (PD014006) which is seen in O87693_BACME.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Mon Jun 4 13:37:59 MDT 2001","Wed Mar 7 15:06:56 MST 2001","Wed Mar 7 15:06:56 MST 2001","Wed Mar 7 15:06:56 MST 2001","","Wed Mar 7 15:06:56 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 7 15:06:56 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 1 to 247 (E-value = 1.7e-16) place PG0190 in the CbiJ family which is described as Precorrin-6x reductase CbiJ/CobK (PF02571)Residues 257 to 547 (E-value = 2.2e-54) place PG0190 in the CbiD family which is described as CbiD (PF01888)","Wed Mar 7 15:06:56 MST 2001","34540063","","Roper JM, Raux E, Brindley AA, Schubert HL, Gharbia SE, Shah HN, Warren MJ. The enigma of cobalamin (Vitamin B12) biosynthesis in Porphyromonas gingivalis Identification and characterization of a functional corrin pathway. J Biol Chem. 2000 Dec 22;275(51):40316-23. PMID: 11007789 ","Raux,E., Lanois,A., Warren,M.J., Rambach,A. and Thermes,C. 1998. Cobalamin (vitamin B12) biosynthesis: identification and characterization of a Bacillus megaterium cobI operon. Biochem. J. 335 (Pt 1): 159-166. PubMed: 9742225. ","Mon Jun 4 13:37:59 MDT 2001","Wed Mar 7 15:06:56 MST 2001","1","","","PG0210" "PG0191","247900","246059","1842","ATGTCGAAACCGAATCATACTGCCATAATCTGTGTATCCGCTGCCGGTCTGGCATTGGCGCGGACCATTGCATCCGAACTATCGGGAGAGAAAGAGATTTTTGCCGTCGGCGCGAATTTTACCGACTGCACGGAGGATGTTTCCTGCGTCTCTTCCATTGCGGAGCTGATGGCCGAATCTTTTGCCCGATACGATGCTTGGGTTTTCATCGGTGCCATGGGAATCTGTATAAGGAGCATCGCGCCTTATGTGGCGGACAAACATCATGATCCGGCCGTAGTGAACGTAGACAGTACAGGCAGGTACGTGGTTTCCGTTCTGAGCGGTCATATGGGTGGAGCTAACGATCTGACGCGGCTGATCGCCTCTGCCATCGGTGGCGAACCGGTGGTTACCACCCAAAGCGACCGAACAGGACTCTGGGCATTGGATACGCTGGCTTCGACCTATGGATGGAAAGCCGTTTCCAATACAGGCGACATGAATCGTCCCATTTCGCTCTTCGTGGGGGGAGCACGTACGGCATTGGTATTGGAGACTTCGGGGCGAGGAGAAGATTTTTTGGAAAGGTCTTGTCCGCCTCATGTCCGCCTTTTCTACTCATTCGATGCTGTCGATCAGGCGGAGTTCGACCTCATTTTGGTTGTTTCTGCCCGGCACTTGGAGAGCCGGTTGCCGATGATCTGCTACTATCCTCCTGCTCTTACGATCGGAGTAGGTTGTCGCAGGCTATGTGCCCCCGAAGGTATTGCGGAACACATCTTCTCCGAAATACGGCAGTCAGGTTATGCCCCCGAAGCCATCGGTCGGATAGCCACGATCGACATCAAAGCCGAAGAGCCGCTTGTGGCCGATCTCGTACATCGTCTCGGAGGGATACCGCTACATATATATACGGGACAAGACTTACAGCCGGTGGAAGTAGCCAACCCCTCGGAAAAGGTATTTGCCGTTACGGGTTGCTACGGAGTAGCCGAAGCCTCGGCACGGAAAGTAGCGGATATGGGAAGTCTTGTGATAGAGAAGCAGAAAGGGCAGCTATCGGAGGGTAACGATTTTACCTTTGCCGTGGCACAGACAGCCGACTCCACCCGTACCGGCCATATCGAAATAGTGGGAGCGGGTCCAGGCGATCCCGATCTGGTATCGGTGCGTGGCAGACAGTTCTTGGAAAAGGCCGATCTGATTCTCTATGCCGGCAGCCTTGTCCCTCGCGAACTGACCGCTTGTGCCAAAGCCGGTGCCACGGTCAGAAGTTCGGCTGCGATGAATCTGCAAGAACAGTTCGAGATCATGTCGGACTTTTACCGCCGAGGCAAATTAGTGGTACGCCTGCATACGGGCGATCCCTGCATCTACGGTGCTATCCAAGAGCAAATGGCACTCTTCGACCACTACGGCATGCGCTATCATATCACGCCGGGTATCTCCTCGTTTCAAGCTGCAGCCGCAGCTCTGCGCTCACAGTTTACCATTCCCGAACGTACACAAACCATTATCCTCACCCGTGGCGAAGGGCGCACTCCCATGCCGGAGAAAGAGAAGCTCCATCTGCTGGCACAGTCCCAAAGCACCATGTGTATCTTCCTTAGTGCCGGCATCGTGGACGATGTACAGCGCGAACTGATGATGCACTACTCTCCCGACACGCCTGTAGCGGCCTGCTATCGACTGACCTGGCCGGATGAAAAAATCTTCCGAGGTACGCTCCGGCATTTGGCAGAAATCGTAAAAGGGAACAACCTGACCCTGACAACGATGATAGTCGTGGGAGAAGCCATAGACAATCGGGAAGGGCTGTCACGGTTGTATGCCGACGAATTCAAACACCTCTTCCGCACA","5.90","-11.47","66689","MSKPNHTAIICVSAAGLALARTIASELSGEKEIFAVGANFTDCTEDVSCVSSIAELMAESFARYDAWVFIGAMGICIRSIAPYVADKHHDPAVVNVDSTGRYVVSVLSGHMGGANDLTRLIASAIGGEPVVTTQSDRTGLWALDTLASTYGWKAVSNTGDMNRPISLFVGGARTALVLETSGRGEDFLERSCPPHVRLFYSFDAVDQAEFDLILVVSARHLESRLPMICYYPPALTIGVGCRRLCAPEGIAEHIFSEIRQSGYAPEAIGRIATIDIKAEEPLVADLVHRLGGIPLHIYTGQDLQPVEVANPSEKVFAVTGCYGVAEASARKVADMGSLVIEKQKGQLSEGNDFTFAVAQTADSTRTGHIEIVGAGPGDPDLVSVRGRQFLEKADLILYAGSLVPRELTACAKAGATVRSSAAMNLQEQFEIMSDFYRRGKLVVRLHTGDPCIYGAIQEQMALFDHYGMRYHITPGISSFQAAAAALRSQFTIPERTQTIILTRGEGRTPMPEKEKLHLLAQSQSTMCIFLSAGIVDDVQRELMMHYSPDTPVAACYRLTWPDEKIFRGTLRHLAEIVKGNNLTLTTMIVVGEAIDNREGLSRLYADEFKHLFRT","247900 246059","Roper et al. (2000) assign a role in cobalamin biosynthesis to this protein, hence the gene is denoted cbiG/F. See in this regard PG193 (cbiC), PG0192 (cbiET), PG0602 (cbiK), PG0190 (cbiJD), PG1040(cbiA), PG1038 (cbiP), PG1037 (cobD), PG1036 (cobD/cbiB), PG0631(cobU), PG0632 (cobT), PG0633 (cobS), PG0434 (hemN/F), PG0438 (cbiL), PG0112 (hemH), PG0193 (cbiH).TIGR ID: PG0211","precorrin methylase","Cytoplasm","Numerous significant hits to precorrin methylase proteins in gapped BLAST; e.g. residues 371-613 are 50% similar to gb|AAB99599.1| cobalamin biosynthesis precorrin-3 methylase of Methanococcus jannaschii, residues 372-613 are 47% similar to gb|AAB85108.1| precorrin-3 methylase of Methanothermobacter thermautotrophicus, residues 371-613 are 48% similar to emb|CAA04314.1| precorrin-4 methylase of Bacillus megaterium, residues 8-344 are 28% similar to pir||T44691 precorrin methylase homolog of Bacillus megaterium.","
InterPro
IPR000878
Domain
Tetrapyrrole methylase
PF00590\"[368-574]TTP_methylase
SSF53790\"[359-596]TCor/por_Metransf
InterPro
IPR002750
Domain
Cobalamin (vitamin B12) biosynthesis CbiG, core
PF01890\"[75-359]TCbiG
InterPro
IPR003043
Domain
Uroporphiryn-III C-methyltransferase
PS00840\"[442-475]TSUMT_2
InterPro
IPR006362
Domain
Cobalamin (vitamin B12) biosynthesis CobM/CbiF, precorrin-4 C11-methyltransferase, core
TIGR01465\"[369-613]TcobM_cbiF
InterPro
IPR012205
Family
Cobalamin (vitamin B12) biosynthesis, bifunctional CbiG and CbiF/CbiH
PIRSF036523\"[1-608]TCbiG_prcrn_met
InterPro
IPR014776
Domain
Tetrapyrrole methylase, subdomain 2
G3DSA:3.30.950.10\"[477-596]T4pyrrole_Mease_sub2
InterPro
IPR014777
Domain
Tetrapyrrole methylase, subdomain 1
G3DSA:3.40.1010.10\"[347-476]T4pyrrole_Mease_sub1
noIPR
unintegrated
unintegrated
PTHR21091\"[411-604]TPTHR21091
PTHR21091:SF17\"[411-604]TPTHR21091:SF17


","BeTs to 9 clades of COG0007COG name: Uroporphyrinogen-III methylaseFunctional Class: HThe phylogenetic pattern of COG0007 is AMT-yq-CeBR----------Number of proteins in this genome belonging to this COG is 1","***** IPB000878 (Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase) with a combined E-value of 2.7e-33. IPB000878A 369-398 IPB000878B 448-491 IPB000878C 549-570","Residues 371-450 are 55% similar to a (METHYLTRANSFERASE METHYLASE TRANSFERASE III) protein domain (PD001537) which is seen in O87696_BACME.Residues 61-136 are 55% similar to a (PROTEIN CBIG COBALAMIN BIOSYNTHESIS) protein domain (PD013167) which is seen in CBIG_SALTY.Residues 453-595 are 51% similar to a (METHYLTRANSFERASE METHYLASE TRANSFERASE III) protein domain (PD001478) which is seen in Q58973_METJA.Residues 235-329 are 35% similar to a (PROTEIN COBALAMIN BIOSYNTHESIS CBIG) protein domain (PD010994) which is seen in COBE_PSEDE.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Mon Jun 4 13:36:01 MDT 2001","Wed Mar 7 15:34:55 MST 2001","Wed Mar 7 15:23:13 MST 2001","Wed Mar 7 15:23:13 MST 2001","Wed Mar 7 15:23:13 MST 2001","Wed Mar 7 15:23:13 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 7 15:23:13 MST 2001","-69% similar to PDB:1CBF THE X-RAY STRUCTURE OF A COBALAMIN BIOSYNTHETIC ENZYME, COBALT PRECORRIN-4 METHYLTRANSFERASE, CBIF (E_value = 3.0E_57);-69% similar to PDB:2CBF THE X-RAY STRUCTURE OF A COBALAMIN BIOSYNTHETIC ENZYME, COBALT PRECORRIN-4 METHYLTRANSFERASE, CBIF, FROM BACILLUS MEGATERIUM, WITH THE HIS-TAG CLEAVED OFF (E_value = 3.0E_57);-48% similar to PDB:1PJQ Structure and function of CysG, the multifunctional methyltransferase/dehydrogenase/ferrochelatase for siroheme synthesis (E_value = 5.7E_16);-48% similar to PDB:1PJS The co-crystal structure of CysG, the multifunctional methyltransferase/dehydrogenase/ferrochelatase for siroheme synthesis, in complex with it NAD cofactor (E_value = 5.7E_16);-48% similar to PDB:1PJT The structure of the Ser128Ala point-mutant variant of CysG, the multifunctional methyltransferase/dehydrogenase/ferrochelatase for siroheme synthesis (E_value = 5.7E_16);","","","Residues 75 to 359 (E-value = 2.1e-36) place PG0191 in the CbiG family which is described as CbiG (PF01890)Residues 368 to 574 (E-value = 1.3e-39) place PG0191 in the TP_methylase family which is described as Tetrapyrrole (Corrin/Porphyrin) Methylases (PF00590)","Wed Mar 7 15:23:13 MST 2001","34540064","","Roper JM, Raux E, Brindley AA, Schubert HL, Gharbia SE, Shah HN, Warren MJ. The enigma of cobalamin (Vitamin B12) biosynthesis in Porphyromonas gingivalis Identification and characterization of a functional corrin pathway. J Biol Chem. 2000 Dec 22;275(51):40316-23. PMID: 11007789 ","Raux,E., Lanois,A., Warren,M.J., Rambach,A. and Thermes,C. 1998. Cobalamin (vitamin B12) biosynthesis: identification andcharacterization of a Bacillus megaterium cobI operon. Biochem. J. 335 (Pt 1): 159-166. PubMed: 9742225.","Mon Jun 4 13:36:01 MDT 2001","Wed Mar 7 15:34:55 MST 2001","1","","","PG0211" "PG0192","249155","247917","1239","ATGTGTGAAGCTACTTACGGAGGAGCTTCTCCTCAGATACGGCGACAGCGATTCGTCATACTCGGGATGAGCGATGACCCTCATCCTTTCTTCCCTCCTGCGGCTATGACAGCTATTGCTTCCGGCAAGATATTCAGCGGAGGCAAACGGCATCATGAGATCGTGCGCGGACTACTCCCTGCGGATGCCGAGTGGATAGATATTACAGTACCGCTGGATGATGTATTTGCCCGTTATCGGGAGTATGAGGAGATAGTTGTTTTCGCTTCGGGGGATCCGCTTTTCTTCGGCTTTGCCAATACGGTGATGAATCGGCTACCCGATGCCGTGGTTACGGTCTATCCCACGTTCAACAGCTTGCAGATGCTTGCTCATGCTCTTCGTATGCCGTACCACGATATGCGGATCGTATCGCTTACGGGCAGGCCATGGCATGAGTTCGACCGTGCACTGATCGAGCGGGCAGAGAAGATCGGCATTCTGACCGACCACGAGCATACCCCCTCCGCTATCGCAATGCGAATGCTCGATTACGGCTATGAGGACTATACCATGTCCGTAGGTACTCGGATGGGAAACCCCCAAGAGCAATGCTTGGACACGTTCTCCCTGCGAGAGGCAGCCGATCGCGACTTCGAACGCCCCAACTGCGTGATACTCTCGGCTACTCGGCCATTCGTTTGCAGTCGTGCTCCGCTCGGACTGTCCGAAAGTGCTTTCATGCCGCTCAACGGGCGAACGAAGATGATTACGAAGATGCCGTTCCGACTCGTTTCGCTCAGTTGTCTCGAACTGCACCGAGCCTCATCCTTTTGGGATATAGGTTTTTGTACGGGATCCGTTTCCATCGAAGCCAAATTGAACTTTCCTCATTTGCATATCACTGCGTTTGAGATCCGTCCCGAAGGTGCCGAACTGATGCCCGTGAACAGCCGCCGCTTCGGTGCACCCGGCATAGCGTACCGGATCGGAGATTTTATGGAGGAGGATATTTCTTCCCTCGCTCCGCCCGATGCCGTTTTTATCGGCGGTCACGGAGGCCGTCTTGTAGAAATGATCGCTAAGGTGCACAGTGTTATGACAAAAGGCGGCCTGCTGGTATTCAACTCCGTATCGGAAGAGAGTCGGCACCTCTTCCTCACCGGAATAGAAGCCTGTGGGATGGAGCTGCTCTCATCCATCCGACTGACGGCTGACGGCAACAATCCTATCGACATACTCCAAGCAAGAAAAAAAGAA","6.30","-5.93","45994","MCEATYGGASPQIRRQRFVILGMSDDPHPFFPPAAMTAIASGKIFSGGKRHHEIVRGLLPADAEWIDITVPLDDVFARYREYEEIVVFASGDPLFFGFANTVMNRLPDAVVTVYPTFNSLQMLAHALRMPYHDMRIVSLTGRPWHEFDRALIERAEKIGILTDHEHTPSAIAMRMLDYGYEDYTMSVGTRMGNPQEQCLDTFSLREAADRDFERPNCVILSATRPFVCSRAPLGLSESAFMPLNGRTKMITKMPFRLVSLSCLELHRASSFWDIGFCTGSVSIEAKLNFPHLHITAFEIRPEGAELMPVNSRRFGAPGIAYRIGDFMEEDISSLAPPDAVFIGGHGGRLVEMIAKVHSVMTKGGLLVFNSVSEESRHLFLTGIEACGMELLSSIRLTADGNNPIDILQARKKE","249203 247917","Roper et al. (2000) assign a role in cobalamin biosynthesis to this protein, hence the gene is denoted cbiE. See in this regard PG193 (cbiC), PG0602 (cbiK), PG0191 (cbiGF), PG0190 (cbiJD), PG1040(cbiA), PG1038 (cbiP), PG1037 (cobD), PG1036 (cobD/cbiB), PG0631(cobU), PG0632 (cobT), PG0633 (cobS), PG0434 (hemN/F), PG0438 (cbiL), PG0112 (hemH), PG0193 (cbiH).TIGR ID: PG0212","precorrin-6Y methylase (precorrin-6 methyltransferase) (precorrin-6Y C5,15-methyltransferase)","Cytoplasm","Numerous significant hits to precorrin methylase (precorrin methyltransferase) in gapped BLAST; e.g. residues 20-413 are 30% similar to pir||T44688 precorrin-6Y methylase of Bacillus megaterium, residues 34-380 are 31% similar to dbj|BAA10641.1| precorrin-6y methylase of Synechocystis sp., residues 4-380 are 26% similar to pir||G36145 precorrin-6y-dependent methyltransferase of Pseudomonas sp.","
InterPro
IPR000878
Domain
Tetrapyrrole methylase
SSF53790\"[8-226]TCor/por_Metransf
InterPro
IPR006365
Family
Cobalamin (vitamin B12) biosynthesis CobL, precorrin-6Y C5,15-methyltransferase
PIRSF036428\"[17-413]TCobL
InterPro
IPR012818
Domain
Cobalamin (vitamin B12) biosynthesis CbiE, precorrin-6Y methyltransferase, core
TIGR02467\"[20-218]TCbiE
InterPro
IPR014008
Domain
Cobalamin (vitamin B12) biosynthesis CbiT, precorrin-6Y methyltransferase_core
TIGR02469\"[249-372]TCbiT
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.150\"[234-407]TG3DSA:3.40.50.150
SSF53335\"[185-411]TSSF53335


","BeTs to 4 clades of COG2241COG name: Precorrin-6B methylase 1 CobL1/CbiEFunctional Class: HThe phylogenetic pattern of COG2241 is amt----c--r----------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 95-220 are 31% similar to a (PRECORRIN-6Y METHYLTRANSFERASE METHYLASE) protein domain (PD106664) which is seen in O87694_BACME.","","Wed Jun 13 13:58:41 MDT 2001","","Wed Jun 13 13:58:41 MDT 2001","Wed Jun 13 13:58:41 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Jun 13 13:58:41 MDT 2001","Wed Jun 13 13:58:41 MDT 2001","","Mon Jun 4 13:33:37 MDT 2001","Wed Mar 7 16:11:19 MST 2001","Wed Jun 13 14:13:53 MDT 2001","Wed Mar 7 16:11:19 MST 2001","","Wed Mar 7 16:11:19 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 7 16:11:19 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Mar 7 16:11:19 MST 2001","34540065","","Roper JM, Raux E, Brindley AA, Schubert HL, Gharbia SE, Shah HN, Warren MJ. The enigma of cobalamin (Vitamin B12) biosynthesis in Porphyromonas gingivalis. Identification and characterization of a functional corrin pathway. J Biol Chem. 2000 Dec 22;275(51):40316-23. PMID: 11007789","Raux,E., Lanois,A., Warren,M.J., Rambach,A. and Thermes,C. 1998. Cobalamin (vitamin B12) biosynthesis: identification and characterization of a Bacillus megaterium cobI operon. Biochem. J. 335 (Pt 1): 159-166. PubMed: 9742225.Blanche,F., Famechon,A., Thibaut,D., Debussche,L., Cameron,B. andCrouzet,J. 1992. Biosynthesis of vitamin B12 in Pseudomonas denitrificans: the biosynthetic sequence from precorrin-6y to precorrin-8x is catalyzed by the cobL gene product. J. Bacteriol. 174 (3): 1050-1052. PubMed: 1732195.","Mon Jun 4 13:33:37 MDT 2001","Mon Jun 4 13:33:37 MDT 2001","1","","","PG0212" "PG0193","250554","249151","1404","ATGAATCGAGCACGAATCATCGTAGCCGGCATCGGTCCGGGAGGAGCATCGGATATTACTCCTGCAGTGCTATCGGCTATCGGCCGGTCCGACGTAGTCGTCGGCTATAAATACTATTTCCGTTTTATCGAACCTTATCTCCGTCCGGATACCCACTGCGTGGATACCGGCATGAAGAAGGAGCGGCAGCGTGCCGAGGAAGCATTCGGGTATGCCCTCAGCGGCAAGACGGTCTGCGTGATCAGCTCCGGCGATGCCGGCATCTACGGTATGGCTCCTCTTATATATGAAATGAAACGAGCCAAAGGCGTGGAGATGGACATCGAAGTGCTGCCCGGTATCAGTGCTTTTCAGAAAGCGGCTTCGCTGCTGGGTGCTCCCATCGGTCACGACCTCTGCCTGATCTCGCTGAGCGATCTGATGACCCCTTGGCCGATCATCGAAAAGCGCATAGTGGCAGCAGCCTCCGCGGACTTCGTCACAGCTATATACAATCCTAAGAGCGAGGGCCGATACTGGCAGCTCTATCGTTTCGTAGAGATCTTCATGCAGTATCGTTCGGCCGATACGCCCGTCGGACTTGTCCGTCAGGCAGGCCGGGAAGAGGAGCAGGTGACGGTGACGACTCTCGGCGAATTCGATCCCGAAGTGGTGGATATGTTCACTGTCGTACTCGTAGGCAATTCGCAGTCGTACTGCTACGAAGGGCACTTTATCACCCCTCGCGGCTACTACCCCGAAGAAGAGATCGAAGCCAAAGGTATCGGGCAGGAGATTATGATCAAGAGTTTCCGCACGATCGAGAAAGAGCTGCACCGTCAGGATTGGCCTTTAGACCACAAGTGGGCTTTGCTCCATGCCATTCATACCACAGCGGACTTCGACATGGAGAATATCCTCTACACGGATGCCGGTGCGGTGGCTTCTCTGTATGAAATGATCGAAGCCGGACGGCTGCGCACGATTGTCACAGATGTGACCATGGTTACCTCCGGTATTCGCAAGGGGGCACTGGAGCGTCTGGGTGTGGAGGCCAAATGCTATCTGCATGATCCGCGCGTGGCAGAACTGGCCGCTCGTCACGGCATCACCCGAACGCAGGCAGGCATACGCCTGGCCGTGGAGGAGCACCCCGATGCTCTTTTCGCCTTCGGCAATGCACCCACAGCCTTACAGGAACTGGCCGATCTGATCCGTCGAGGCAAAGCCTCTCCGGCCGGGATCATTGCGGCACCGGTCGGATTCGTCCACGTACAGGAATCCAAACATGCCGTGAAGCCGTTCCGCTCCATTCCGAAGATTATCGTCGAAGGCCGTAAAGGCGGCAGCAATCTGGCTGCCACGCTGGTCAATGCCATACTCTGCTATAACGATGCCGAACAACTCAGACCGGGGCGCGATGTG","6.40","-4.35","51508","MNRARIIVAGIGPGGASDITPAVLSAIGRSDVVVGYKYYFRFIEPYLRPDTHCVDTGMKKERQRAEEAFGYALSGKTVCVISSGDAGIYGMAPLIYEMKRAKGVEMDIEVLPGISAFQKAASLLGAPIGHDLCLISLSDLMTPWPIIEKRIVAAASADFVTAIYNPKSEGRYWQLYRFVEIFMQYRSADTPVGLVRQAGREEEQVTVTTLGEFDPEVVDMFTVVLVGNSQSYCYEGHFITPRGYYPEEEIEAKGIGQEIMIKSFRTIEKELHRQDWPLDHKWALLHAIHTTADFDMENILYTDAGAVASLYEMIEAGRLRTIVTDVTMVTSGIRKGALERLGVEAKCYLHDPRVAELAARHGITRTQAGIRLAVEEHPDALFAFGNAPTALQELADLIRRGKASPAGIIAAPVGFVHVQESKHAVKPFRSIPKIIVEGRKGGSNLAATLVNAILCYNDAEQLRPGRDV","250668 249151","Roper et al. (2000) assign a role in cobalamin biosynthesis to this protein, hence the gene is denoted cbiH. See in this regard PG0602 (cbiK), PG0192 (cbiET), PG0191 (cbiGF), PG0190 (cbiJD), PG1040 (cbiA), PG1038 (cbiP), PG1037 (cobD), PG1036 (cobD/cbiB), PG0631 (cobU), PG0632 (cobT), PG0633 (cobS), PG0434 (hemN/F), PG0438 (cbiL), PG0112 (hemH).While PG0193 was found to be similar to a similar sized protein from A. fulgidus (see BLAST summary), all other hits were to the N-terminal (~1-250aa) or C-terminal half (~250-450aa).TIGR ID: PG0213","probable cobalamin biosynthesis precorrin-3 methylase (precorrin-3 methyltransferase) (precorrin-3B C17-methyltransferase) (precorrin-8X methylmutase)","Cytoplasm","Numerous significant hits to precorrin methylase (precorrin methyltransferase) proteins in gapped BLAST; e.g. residues 2-458 are 34% similar to gb|AAB90518.1| cobalamin biosynthesis precorrin-3 methylase of Archaeoglobus fulgidus, residues 3-244 are 50% similar to emb|CAA04307.1| precorrin-3 methylase of Bacillus megaterium, residues 8-244 are 48% similar to gb|AAA27260.1| precorrin methylase of Salmonella typhimurium.","
InterPro
IPR000878
Domain
Tetrapyrrole methylase
PF00590\"[5-214]TTP_methylase
SSF53790\"[4-242]TCor/por_Metransf
InterPro
IPR003722
Domain
Cobalamin (vitamin B12) biosynthesis CobH/CbiC, precorrin-8X methylmutase, core
PD006871\"[303-447]TPcmt
G3DSA:3.40.50.10230\"[238-454]TCbl_synth_CobH/CbiC_core
PF02570\"[256-458]TCbiC
InterPro
IPR006363
Domain
Cobalamin (vitamin B12) biosynthesis CobJ/CibH, precorrin-3B C17-methyltransferase, core
TIGR01466\"[6-245]TcobJ_cbiH
InterPro
IPR014422
Family
Cobalamin (vitamin B12) biosynthesis, bifunctional CbiH and CbiC
PIRSF004874\"[1-468]TPrcrn_mtase_isom
InterPro
IPR014777
Domain
Tetrapyrrole methylase, subdomain 1
G3DSA:3.40.1010.10\"[4-114]T4pyrrole_Mease_sub1
noIPR
unintegrated
unintegrated
PTHR21091\"[54-257]TPTHR21091
PTHR21091:SF14\"[54-257]TPTHR21091:SF14
SSF63965\"[257-462]TCbiC


","BeTs to 5 clades of COG1010COG name: Precorrin-3B methylase CobJ/CbiHFunctional Class: HThe phylogenetic pattern of COG1010 is amt----c--r----------Number of proteins in this genome belonging to this COG is 1","***** IPB000878 (Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase) with a combined E-value of 3.2e-23. IPB000878A 6-35 IPB000878B 86-129 IPB000878C 189-210","Residues 97-228 are 52% similar to a (METHYLTRANSFERASE METHYLASE TRANSFERASE III) protein domain (PD001478) which is seen in CBIH_SALTY.Residues 280-453 are 42% similar to a (ISOMERASE PRECORRIN PRECORRIN-8X) protein domain (PD006871) which is seen in CBIC_SALTY.Residues 106-243 are 45% similar to a (METHYLTRANSFERASE PRECORRIN-3 METHYLASE TRANSFERASE) protein domain (PD008457) which is seen in COBJ_ARCFU.Residues 6-96 are 48% similar to a (METHYLTRANSFERASE METHYLASE TRANSFERASE) protein domain (PD002072) which is seen in O87689_BACME.","","Wed Jun 13 14:03:12 MDT 2001","","Wed Jun 13 14:03:12 MDT 2001","Wed Jun 13 14:03:12 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Jun 13 14:03:12 MDT 2001","Wed Jun 13 14:03:12 MDT 2001","","Wed Jun 13 14:20:11 MDT 2001","Wed Mar 7 16:47:57 MST 2001","Wed Jun 13 14:20:11 MDT 2001","Wed Mar 7 16:39:47 MST 2001","Wed Mar 7 16:39:47 MST 2001","Wed Mar 7 16:39:47 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 7 16:39:47 MST 2001","-52% similar to PDB:2AFR The Crystal Structure of Putative Precorrin Isomerase CbiC in Cobalamin Biosynthesis (E_value = 1.9E_24);-52% similar to PDB:2AFV The Crystal Structure of Putative Precorrin Isomerase CbiC in Cobalamin Biosynthesis (E_value = 1.9E_24);-56% similar to PDB:1OU0 precorrin-8X methylmutase related protein (E_value = 7.3E_21);-53% similar to PDB:1V9C Crystal Analysis of Precorrin-8x Methyl Mutase from Thermus Thermophilus (E_value = 9.6E_21);-47% similar to PDB:1F2V CRYSTAL STRUCTURE ANALYSIS OF PRECORRIN-8X METHYLMUTASE OF AEROBIC VITAMIN B12 SYNTHESIS (E_value = 1.8E_19);","","","Residues 5 to 214 (E-value = 1.7e-39) place PG0193 in the TP_methylase family which is described as Tetrapyrrole (Corrin/Porphyrin) Methylases (PF00590)Residues 256 to 458 (E-value = 9e-43) place PG0193 in the CbiC family which is described as Precorrin-8X methylmutase (PF02570)","Wed Mar 7 16:39:47 MST 2001","34540066","","Roper JM, Raux E, Brindley AA, Schubert HL, Gharbia SE, Shah HN, Warren MJ. The enigma of cobalamin (Vitamin B12) biosynthesis in Porphyromonas gingivalis. Identification and characterization of a functional corrin pathway. J Biol Chem. 2000 Dec 22;275(51):40316-23. PMID: 11007789","Raux,E., Lanois,A., Warren,M.J., Rambach,A. and Thermes,C. 1998. Cobalamin (vitamin B12) biosynthesis: identification andcharacterization of a Bacillus megaterium cobI operon. Biochem. J. 335 (Pt 1): 159-166. PubMed: 9742225.","Mon Jun 4 12:40:20 MDT 2001","Wed Mar 7 16:47:57 MST 2001","1","","","PG0213" "PG0194","251103","251600","498","ATGGAAGTAGAAGCATTCGCCCATAGCGTAGCCCCTTTGGCCCCTCGACTCAAACGAGTGGCATATAGCATCCTCGACGACGAGGAAGCTGCGGCCGACGTGTCGCAAGAGGCTCTGATGCGTCTGTGGATCAACCGAGAGCGGCTGGGCGGATACGACAGCATCGAAGCAGTGGCTGTGACCACTGCTCGGCGAATAGCCTTGGATATGCTCCGCAAAGAAGGACGGATGGAACCGCTACCGGACGATCTGCCTTTCTCCGATCATGCCCCTACACCCCAAGGTGTACTGGAGCAATCCGAGACCATGCGTCTGGTGGAAGCTGCTATCGAAGCACTGCCTCCGTTGCAGCGAATGACTTTCCGGCTGAAAGAGATCGAAGGCTACGAAAGCGAGGTAATCGCCCGGCTCGTAGGCGTGAAAGTCGAAGCCGTTTATACCAACTTGAGCCGCGCCCGACGCGCACTGCGTACAGCACTGGCTCTCCAACTCAAACGA","5.50","-2.51","18623","MEVEAFAHSVAPLAPRLKRVAYSILDDEEAAADVSQEALMRLWINRERLGGYDSIEAVAVTTARRIALDMLRKEGRMEPLPDDLPFSDHAPTPQGVLEQSETMRLVEAAIEALPPLQRMTFRLKEIEGYESEVIARLVGVKVEAVYTNLSRARRALRTALALQLKR","251070 251600 [Shorter 252 373 99]","TIGR ID: PG0214","conserved hypothetical protein (probable RNA polymerase sigma-70 factor)","Cytoplasm","Numerous weak hits in gapped BLAST; e.g. residues 14-161 are 32% similar to gb|AAC45221.1| extracytoplasmic function alternative sigma factor of Mycobacterium smegmatis, residues 14-161 are 31% similar to gb|AAC45219.1| extracytoplasmic function alternative sigma factor of Mycobacterium avium, residues 14-160 are 30% similar to emb|CAC31457.1| ECF subfamily sigma subunit of Mycobacterium leprae.","
InterPro
IPR007627
Domain
RNA polymerase sigma-70 region 2
PF04542\"[9-77]TSigma70_r2
InterPro
IPR013249
Domain
RNA polymerase sigma factor 70, region 4 type 2
PF08281\"[103-156]TSigma70_r4_2
InterPro
IPR013324
Domain
RNA polymerase sigma factor, regions 3 and 4
SSF88659\"[71-160]TSigma_r3_r4
InterPro
IPR013325
Domain
RNA polymerase sigma factor, region 2
SSF88946\"[3-95]TSigma_r2
InterPro
IPR014284
Domain
RNA polymerase sigma-70
TIGR02937\"[4-160]Tsigma70-ECF
noIPR
unintegrated
unintegrated
G3DSA:1.10.1740.10\"[4-76]TG3DSA:1.10.1740.10


","BeTs to 6 clades of COG1595COG name: Specialized sigma subunits of RNA polymeraseFunctional Class: KThe phylogenetic pattern of COG1595 is ------VCEBRH-----l---Number of proteins in this genome belonging to this COG is 6","***** IPB000838 (Sigma factor, ECF subfamily) with a combined E-value of 8.1e-16. IPB000838A 33-69 IPB000838B 110-156","Residues 19-145 are 31% similar to a (FACTOR SIGMA RNA POLYMERASE) protein domain (PD001205) which is seen in O05767_MYCSM.","","Wed Jun 13 14:20:40 MDT 2001","","Wed Jun 13 14:20:40 MDT 2001","Wed Jun 13 14:20:40 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Jun 13 14:20:40 MDT 2001","Wed Jun 13 14:20:40 MDT 2001","","","Fri Apr 6 12:51:22 MDT 2001","Wed Jun 13 14:24:18 MDT 2001","Wed Mar 7 16:59:17 MST 2001","Wed Mar 7 16:59:17 MST 2001","Wed Mar 7 16:59:17 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 9-156 are 27% similar to PG1449, a predicted RNA polymerase sigma factor ECF subfamily (sigma-70). ","Wed Jun 13 14:24:18 MDT 2001","Wed Mar 7 16:59:17 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 9 to 77 (E-value = 1.2e-11) place PG0194 in the Sigma70_r2 family which is described as Sigma-70 region 2 (PF04542)Residues 109 to 158 (E-value = 2.5e-05) place PG0194 in the Sigma70_r4 family which is described as Sigma-70, region 4 (PF04545)","Wed Mar 7 16:59:17 MST 2001","34540067","","","Wu,Q.L., Kong,D., Lam,K. and Husson,R.N. 1997. A mycobacterial extracytoplasmic function sigma factor involved in survival following stress. J. Bacteriol. 179 (9): 2922-2929. PubMed: 9139909.","","Tue Mar 13 13:11:49 MST 2001","1","","","PG0214" "PG0195","251600","252085","486","ATGATGAAACGAATAGGGTTCAACAAAAAAGCTGTTCCGACCGAAGCGGAAATCGGCCAATTGTTAGATAAGTACTTCGACGGGCTTACCTCCGGAGCAGAAGAGGATCGCCTGCGTCGCTATTTTGCTACGGCCAAGCTGCCCGAGCAGTGGGAGCACTTGCGCCCCCTCTTCGGTTATGTCAGTTGCAGGCGTGCCGTGGATGGGCGTTTCCTTTCCTACACTCGGAAACTTGCTACCCGCAACTTGCTCTCAAGACGTATCCTGTGGAGTGTAGGAGGAGCCTCCGTAGCAGCAGCCATCGCTCTGACGATCGCTCTCCGATCGCCTCATGTGGCGGATCAGCCACTGCCGACTACGGGTTCCTTCGCCGTGGTGAACGGCGAGCGTGTGAACGATCCCGATCTGGTGCGACTGTATGCACAGGAAGCCTTCGATGCTGTATCCATCGATAGGGAGGAGTTGGCACAGGAGCTTTTCGACCTT","8.40","1.43","18170","MMKRIGFNKKAVPTEAEIGQLLDKYFDGLTSGAEEDRLRRYFATAKLPEQWEHLRPLFGYVSCRRAVDGRFLSYTRKLATRNLLSRRILWSVGGASVAAAIALTIALRSPHVADQPLPTTGSFAVVNGERVNDPDLVRLYAQEAFDAVSIDREELAQELFDL","251228 252085 [Bad Olap 251 373 0]","TIGR ID: PG0215","conserved hypothetical protein","Cytoplasm","Its nearest neighbor in the NR database is gi:29345735 from Bacteroides thetaiotaomicron VPI-5482.","
noIPR
unintegrated
unintegrated
tmhmm\"[88-108]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Wed Jun 13 14:15:12 MDT 2001","","Wed Jun 13 14:15:12 MDT 2001","Wed Jun 13 14:15:12 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Jun 13 14:15:12 MDT 2001","Wed Jun 13 14:15:12 MDT 2001","","","Tue Mar 1 13:59:48 2005","Tue Mar 1 13:59:48 2005","Wed Mar 7 17:00:41 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 7 17:00:41 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Mar 7 17:00:41 MST 2001","34540068","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Tue Mar 1 14:01:13 2005","","1","","","PG0215" "PG0196","252096","252593","498","ATGAGCGAATACATAAATCAGAACAAAACAGTATCAGCAATAAATACGATGAAACAGTACAAACTATATCTGTTCACCCTGCTCCTGTGCCTGACGGCTCTTGCTTCGGCATACGGACAGAGTTCGGCGCAGCCCCATGTACAAGGGGTATTCGACCACTACGGCCGAGCCAAAGATGTGACGATGGTGGTGATGAACCGTGAGATGTTGGTCGAATACGACATCCATCTGTACAAGAGCCTGACCATGCGCGATCCGGGCAAACGCCTGCAGAAGATACAGGCTGCGGTATCCGCTGATCGAAAGTCTGCCAAGAGTATCAAGGAAGTGATAGACTCCGGTATCCTGACTTCGGGCTACTATGAATTGCCTCCGGCCAACGGTCTGAACCGATATGTACTCTATCGCTACAATCCTAAACGCGGTATCACACTCATCTACATCGAGGGTAAGATCGGTTCCGAGGATCTGGTATCGCTCCTGATGCAAAACAAGAAT","10.20","7.66","18792","MSEYINQNKTVSAINTMKQYKLYLFTLLLCLTALASAYGQSSAQPHVQGVFDHYGRAKDVTMVVMNREMLVEYDIHLYKSLTMRDPGKRLQKIQAAVSADRKSAKSIKEVIDSGILTSGYYELPPANGLNRYVLYRYNPKRGITLIYIEGKIGSEDLVSLLMQNKN","252096 252593","TIGR ID: PG0216","hypothetical protein","Periplasm, Extracellular","No significant hit found in gapped BLAST with E value less than e-04.","
noIPR
unintegrated
unintegrated
signalp\"[1-43]?signal-peptide
tmhmm\"[21-39]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Mar 7 17:02:05 MST 2001","","Wed Mar 7 17:02:05 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 7 17:02:05 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Mar 7 17:02:05 MST 2001","34540069","","","","","","1","","","PG0216" "PG0197","252630","253520","891","ATGAAAAAAGCATTTCTCTTAGGCCTCGCCGGTATCTTCTTCGCCCAAACGGCTATTGCCGGCAATGCCGCGCAAGGAGTTCCCGACACGACTGTCCGAATCGAGGACAAAGTACTCGTCATCAACGAAACCGAGGACGACATCGACATCATGCTCTATCGTTACAATCCCGACGGCACGCGCGGACGCAGCGAACAAGTATTCAAAGGAGTATATCTCAAAGGGAGGAGCATCGAACAGCGTTTCCGCAATACGATCTTCGATGTACCTCTGAATCTTACGAGAAGCAACAAGTGCTCCGGCGACAAACGTATTCGTTCCATTGGATCGGGTTCTTTCAAACTCGGATTCGTGAACCTGACAGGTTATGCAGGCGAGCATATCAATGCCAGCTCTTCGCTTCGATATACGCTCGGTTTGATGAGCGTCTCGTACCGACTCAATGACTGGCTGGTGATAGCTCCCAATCTGGACATCGAGTTCAACTCCATTCACTTGAAGAACAATTATTCATTTCAGGATGTCGAGGGGCTTACCCAAGTACTCCCGGCTGCGGAAGGAGTCACTTACGACAACAGCCGACTGCACATCACCTATATGAACGTCGCCGTACCGTTTATGATGAAGAAGTGCCGCAGCTCCTTTTCTCTCTATGCCGCTCCGGTGCTGAAGTTCAAGACGGCTTCCAGCTCTAAGGTGTGGTTGCCGGACAACAAGAGTCACCAGAAACACGGTCGCGATCTGAACCTGAATCCTATCGTCCTCGAAGCTCGTGTCGGTATCAATTACAGTGCTTTCAATCTCTATGGTTCTTATACGCTTACGCCCCTGTTCCGCAGTGGAAAAGGACCTGATACACGCATGTTCGCCATCGGCTTCGGCTTTGGTTTC","10.30","11.11","33133","MKKAFLLGLAGIFFAQTAIAGNAAQGVPDTTVRIEDKVLVINETEDDIDIMLYRYNPDGTRGRSEQVFKGVYLKGRSIEQRFRNTIFDVPLNLTRSNKCSGDKRIRSIGSGSFKLGFVNLTGYAGEHINASSSLRYTLGLMSVSYRLNDWLVIAPNLDIEFNSIHLKNNYSFQDVEGLTQVLPAAEGVTYDNSRLHITYMNVAVPFMMKKCRSSFSLYAAPVLKFKTASSSKVWLPDNKSHQKHGRDLNLNPIVLEARVGINYSAFNLYGSYTLTPLFRSGKGPDTRMFAIGFGFGF","252630 253520 [Shorter 257 119 99]","TIGR ID: PG0217","hypothetical protein","Outer membrane, Cytoplasm","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-20]?signal-peptide
tmhmm\"[5-25]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Mar 7 17:06:14 MST 2001","","Wed Mar 7 17:06:14 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1-292 are 31% similar to PG0198, a hypothetical protein.","Wed Mar 7 17:06:14 MST 2001","Wed Mar 7 17:06:14 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Mar 7 17:06:14 MST 2001","34540070","","","","","","1","","","PG0217" "PG0198","253435","254391","957","ATGGTTCTTATACGCTTACGCCCCTGTTCCGCAGTGGAAAAGGACCTGATACACGCATGTTCGCCATCGGCTTCGGCTTTGGTTTCTAAAAACGAAAAAGCAATGAAACGTTTCTTTTTGACCACCGCTATACTGCTGTCCTCCGTGCTTGCCTCTTACGCCGACAGCCTTCCTTCGGCCGTTCGCGATACGGTGATTCGTGCCGGGGAGAAAACCATTATGATCAAGGATGGTGAGGACGATTTCGAGGTAATTATACAGGAGTCCATGCCTTCCGGAGATACGATCCGAAACGAAAAGATATTCAGAGGTGTCTATCGCAATGGTCGCAGCATCGAACAACGCTTTCGGAATACTTTGATCAATCGGCCGAACAGGGATAAGGAAATGCCCGTTTGGGGTACCTACGGTTTCGGCTCTTTCGAATGGGGTGAGTTGAAGGTCGATGACTCTCATTCCGACATAGGTCGGAGTCATTCCTACCGTGTTTCGATTCAGATCTTCGGAGACATCTACCGTCTGAACAAGTATCTGGTGCTTACTTATGCCCTCGGTTGGGATGCCGACATTTACCGCATCACCGACTCCAAAACGCTGAAGAATATCGACGGAGTGACTACCGTAGTGGACGTGCCCGGCCGAGCCGAATGTACACTCACTGCTGCATATCTGAAAGCCATGCCGGCATTGGCATTCAATGGGGTCCGTTCTAACTTGACTGTTTATATAGCTCCTGTATTGAGAGCCAAAGTATATTCTGCTGCTACGACCGATGGCCCCGATGGCCGGCTGGAAAAGTTGAGGAGGGTCAAACTGAACACCTTCTCGGTCGAAGCCCGTGCCGGTATCAACTATCGCAACGCAGGGATTTTCTTCACCTACTCGCTGACACCGCTTTTCCGAAGCGGCAAAGGCCCCAAGCTCCATCCTTACACAATCGGTTTGTCCTTGAGCTTG","10.30","11.83","35583","MVLIRLRPCSAVEKDLIHACSPSASALVSKNEKAMKRFFLTTAILLSSVLASYADSLPSAVRDTVIRAGEKTIMIKDGEDDFEVIIQESMPSGDTIRNEKIFRGVYRNGRSIEQRFRNTLINRPNRDKEMPVWGTYGFGSFEWGELKVDDSHSDIGRSHSYRVSIQIFGDIYRLNKYLVLTYALGWDADIYRITDSKTLKNIDGVTTVVDVPGRAECTLTAAYLKAMPALAFNGVRSNLTVYIAPVLRAKVYSAATTDGPDGRLEKLRRVKLNTFSVEARAGINYRNAGIFFTYSLTPLFRSGKGPKLHPYTIGLSLSL","253402 254391 [Bad Olap 255 119 0]","TIGR ID: PG0218","conserved hypothetical protein","Outer membrane, Cytoplasm","Its nearest neighbor in the NR database is gi:29345733 from Bacteroides thetaiotaomicron VPI-5482.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Wed Jun 13 14:21:22 MDT 2001","","Wed Jun 13 14:21:22 MDT 2001","Wed Jun 13 14:21:22 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Jun 13 14:21:22 MDT 2001","Wed Jun 13 14:21:22 MDT 2001","","","Tue Mar 1 14:04:26 2005","Tue Mar 1 14:04:26 2005","Wed Mar 7 17:08:31 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 35-314 are 31% similar to PG0197, a hypothetical protein.","Wed Jun 13 14:27:38 MDT 2001","Wed Mar 7 17:08:31 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Mar 7 17:08:31 MST 2001","34540071","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Tue Mar 1 14:06:02 2005","","1","","","PG0218" "PG0198.2","254587","254955","369","GTGTCCTGGAAAAAATTGTCAGCAAAGTTGTCGATATTTTCATTTGCTTTTTCTCCAATCAAAGATTCTACTGCTGCACCTGCAATTCCTCCCGTGATTGTCCCAAGACCCGGAATTACACTTCCTATAGCAGCCCCTATAGCCGCTCCTTTTCCTTTTTTCAATGTATTGCGCGCTAGCTTACTGCCAAAGCTTCTTTTGGGCTTTCCGACAGTTGCTACTCCACATACGGGGCATCTACATGCTTTACTACTCATTTCTTGTCGCTGTTTTATTTATTCTTGTATTTTTTCAATCTCTCTTTACGCTCTTTTTTTTTTTTTCTTTATAAATCTGATAAGCTCTTGCTGCTATCATAGCGGCAACTGT","","","13388","VSWKKLSAKLSIFSFAFSPIKDSTAAPAIPPVIVPRPGITLPIAAPIAAPFPFFNVLRASLLPKLLLGFPTVATPHTGHLHALLLISCRCFIYSCIFSISLYALFFFFFINLISSCCYHSGNC","","NO TIGR ID corresponds to this gene.","hypothetical protein","Inner membrane, Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
noIPR
unintegrated
unintegrated
tmhmm\"[90-110]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","","","Wed Mar 7 17:15:51 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 7 17:15:51 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Mar 7 17:15:51 MST 2001","","","","","","","1","","","" "PG0199","255648","255103","546","ATGGGAGAAGACAAATTACTAAAGCTGGCATTCAAACTGGTTAAGTTGATGGACAAGGCCGCGGATGAAGTTCTGCCGGGAAAAATTGTCGGGATAGTGAAAACCCACAGCAAACTGGCCGTCGGATCTGCATTTATCCCTGTTCCGGGAGCAGACCTTGCAGCCGGAGCAGCAAGTATATGGGGCATGTATATCCGTATCAACAAAGCCATTGACCTTCCTTTCAAAGAGAACATAATCAAAAGCATCGGCTCCGGAGTTGCGACCAATTTAGCCGGCTACATCGTAGTTTCCGGAGTAGGAGGACTTTTGAAGTTCGTGCCGGGTCTCGGCTCTTTGGGCGGAGGGATAATCATGGCAACGGCTATGTACGCCTGCACTCTTACTTCCGGATATATCTATCTGAAAGCTCTCTGCGCACTAATAGAAAAGAAAGGAATCAATGTCTCTGGCGAGGAACTCAAAAAACAGGTAACGAGCATCCTTGAGAACAACAAGGAAGAGATCAAGACTTTCATCAATGAAGCAAAGGAAGGATATAAAAAG","10.10","7.14","19173","MGEDKLLKLAFKLVKLMDKAADEVLPGKIVGIVKTHSKLAVGSAFIPVPGADLAAGAASIWGMYIRINKAIDLPFKENIIKSIGSGVATNLAGYIVVSGVGGLLKFVPGLGSLGGGIIMATAMYACTLTSGYIYLKALCALIEKKGINVSGEELKKQVTSILENNKEEIKTFINEAKEGYKK","255648 255103","TIGR ID: PG0219","hypothetical protein","Cytoplasm, Inner membrane","One weak hit in gapped BLAST; e.g. residues 32-171 are 31% similar to gb|AAD06248.1| putative of Helicobacter pylori J99.","
noIPR
unintegrated
unintegrated
tmhmm\"[45-65]?\"[86-108]?\"[114-134]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 32-171 are 31% similar to a (PUTATIVE) protein domain (PD216362) which is seen in Q9ZL99_BBBBB.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Mar 7 17:19:20 MST 2001","Wed Mar 7 17:19:20 MST 2001","Wed Mar 7 17:19:20 MST 2001","","Wed Mar 7 17:19:20 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 7 17:19:20 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Mar 7 17:19:20 MST 2001","34540072","","","","","","1","","","PG0219" "PG0200","256470","256006","465","ATGCTGAACCTGTCAGTCAAGAGCCGTCTCATGAAGATCGGCAAGCACAAGGACAAGACCATGTACTATGCCCAAGTGGACAAACCCCGAGTAATCGAGTACGAGGACGTCATCAAAGACATTGCCGAGATGTCCTCCCTGACCACAGGCGATGTGCGCAACGCCATCGACCGACTCGCCTACTACCTCCAGCGCGAACTCACCGAGGGCAATACCGTCAGACTCGGACAGATCGGCACCTTCCGCGTGTCCGTTCCTTCCAAGTATGTGGAAACGGAGAAAGAGGTGAATGCCTCCATCCTCAAAAAGCCCAGAATCCGTTTCTATATCAATAACACGCTCTCAGCCGTAGCTGACAATATCCGTTTGGCTGTCTACCGCAACGGTCAGAAAGTAGATGACACCACCTCTCCCTCCACTCCGAGCGAAGGCGGCGGCGAACAAACCGGCGGAAGCGGCGGCCTC","10.10","4.24","17233","MLNLSVKSRLMKIGKHKDKTMYYAQVDKPRVIEYEDVIKDIAEMSSLTTGDVRNAIDRLAYYLQRELTEGNTVRLGQIGTFRVSVPSKYVETEKEVNASILKKPRIRFYINNTLSAVADNIRLAVYRNGQKVDDTTSPSTPSEGGGEQTGGSGGL","256470 256006","TIGR ID: PG0222","hypothetical protein","Outer membrane, Periplasm","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR005902
Family
Putative DNA-binding protein, HU-related
TIGR01201\"[1-155]THU_rel
InterPro
IPR010992
Family
IHF-like DNA-binding
SSF47729\"[31-124]TIHF_like_DNA_bnd


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Mon Mar 5 09:33:45 MST 2001","","Mon Mar 5 09:33:45 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1-150 are 54% similar to PG1221, a hypothetical protein. Similarities are also seen to PG0306, PG1781, PG0502, PG1124, PG0511, PG1882, PG0764, PG0830, many of which are conserved hypothetical proteins.","Mon Mar 5 09:33:45 MST 2001","Mon Mar 5 09:33:45 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Mar 5 09:33:45 MST 2001","34540074","","","","","","1","","","PG0222" "PG0201","257700","257212","489","ATGCTGGACTTTGCTGCCATAGATTTCGAGACGGCCAATGCCGAGCGGACGAGCGTCTGCAGCGTGGGCATCATCGTTGTACGAGGTGGCCAGATCGTACACCGTTATTACAGCCTGATTCGTCCCGAACCGGACTATTACAATTACCACAATACACGCGTACACGGACTGACCGCTGCCGACACCGAGTCGGCACGGATCTTTCCGGACGTGTGGGCCGAAGTGGAGCCTCTGATCGCAGGGCTTCCGCTCGTGGCACACAACAAGCCGTTCGACGAAGGTTGCCTCAAGGCGGTATTCAGGATGTACCGAATGGACTACCCCGACTACCCATTCTTCTGCACGCTCCAGGCAGCACGCCGCCAACTGCGACACCTCAGCGATCATCGTCTGCCCACCGTAGCCCAATGCTGTGGATACACATTGGCACAACACCACCAAGCCCTGGCAGATGCAGAAGCCTGTGCCGCCATCGCCCTGAAGCTCTTG","6.70","-1.37","18352","MLDFAAIDFETANAERTSVCSVGIIVVRGGQIVHRYYSLIRPEPDYYNYHNTRVHGLTAADTESARIFPDVWAEVEPLIAGLPLVAHNKPFDEGCLKAVFRMYRMDYPDYPFFCTLQAARRQLRHLSDHRLPTVAQCCGYTLAQHHQALADAEACAAIALKLL","257700 257212 [Shorter 262 277 98]","TIGR ID: PG0223","DNA polymerase III, epsilon chain","Cytoplasm","One weak hit in gapped BLAST; e.g. residues 38-146 are 34% similar to pirH70794 probable dnaQ protein of Mycobacterium tuberculosis (strain H37RV).","
InterPro
IPR012337
Domain
Polynucleotidyl transferase, Ribonuclease H fold
SSF53098\"[3-163]TRNaseH_fold
InterPro
IPR013520
Domain
Exonuclease, RNase T and DNA polymerase III
PF00929\"[4-159]TExonuc_X-T
noIPR
unintegrated
unintegrated
G3DSA:3.30.420.10\"[2-163]TG3DSA:3.30.420.10


","BeTs to 6 clades of COG0847COG name: DNA polymerase III epsilon subunit (3'-5' exonuclease)Functional Class: LThe phylogenetic pattern of COG0847 is a---YQvcEbRHuj---lINxNumber of proteins in this genome belonging to this COG is 3","***** PF00929 (Exonuclease) with a combined E-value of 8e-06. PF00929A 5-15 PF00929B 84-99 PF00929C 146-159","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Mon Apr 5 13:51:54 2004","Mon Apr 5 13:46:21 2004","Mon Apr 5 13:51:54 2004","Thu Mar 8 08:27:17 MST 2001","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Apr 5 13:46:21 2004","No significant hits to the PDB database (E-value < E-10).","","","Residues 4 to 159 (E-value = 2.4e-17) place PG0201 in the Exonuc_X-T family which is described as Exonuclease (PF00929)","Thu Mar 8 08:27:17 MST 2001","34540075","","","","","","1","","","PG0223" "PG0202","257203","256940","264","TTGCCATGGGAAACTTCATGCCCCTCTTTATCCACCGGGTGTTACAAGCGTTTCCATAATATAAAATCGTTAATCTTATACAGGTCGGAAAAAGAGTTCGATCGTCTGAATATATTTTCTAACTTTGGCACTCTCTCAATTACATTTATCATCGGGAACCATGTATCGGGACATAGAAGCAAAGAAAACCACCTTCGCGGACGACTGCATACCAAGTCGTTCTTTGCGCTTTTTCCGTTTGAAATCCTCTCAAATCCTTACTAC","10.30","6.09","10311","LPWETSCPSLSTGCYKRFHNIKSLILYRSEKEFDRLNIFSNFGTLSITFIIGNHVSGHRSKENHLRGRLHTKSFFALFPFEILSNPYY","257203 256940 [Bad Olap 261 277 0]","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No hit found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","","","Thu Mar 8 08:28:46 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 8 08:28:46 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Mar 8 08:28:46 MST 2001","","","","","","","1","","","" "PG0204","258342","257707","636","ATGGATTTTTTAGACAAAGTATTACAAGATTTGAGCCTTATCGACCTGAAAGAGATCATAGGCTCCTTCGTGATTCTATTCGTGGCAATCGATATTATCGGTGCTATTCCGGTAGTACTCAGCCTCAAGGACAGAGGCCAGTCCTTCCATAGCGGCAAGGCCACCACTTTTTCCTGCGTCATGATGCTCGCTTTCCTCTTCATCGGAGAGCCTATGCTGAACTTCTTCGGCGTGGACGTCTCTTCCTTCGGCGTGGCAGGGGCTATCGTCCTCTTCGTGATGGCCGTGGAGATGGTATTCGGTGTGCAGATATTCAAGGACGACGGGCCTGCCGGCAGTGCCACCATCGTACCGCTGGTATTCCCTCTCTTTGCAGGGGCAGCAACCTTTACCACCATCCTCACGCTGCGTGCCGACGGTATAGCGATGACCAACATTGCCATTGCCATCCTTATCAACGTGGCTATGATCTACCTCATGCTCCGTTTCGTAAACCAGCTGGAGCGTTTCTTCGGTAAGGGCGGTATATACATCCTGCGCAAGTTCTTCGGTGTCATTCTGCTTGCCATCTCGGTGAAGTTCTTCACCGGCAATATCGTCAAGATCATCGAGACGATGAACGAAGCCTTGCAGAAG","5.90","-0.82","23065","MDFLDKVLQDLSLIDLKEIIGSFVILFVAIDIIGAIPVVLSLKDRGQSFHSGKATTFSCVMMLAFLFIGEPMLNFFGVDVSSFGVAGAIVLFVMAVEMVFGVQIFKDDGPAGSATIVPLVFPLFAGAATFTTILTLRADGIAMTNIAIAILINVAMIYLMLRFVNQLERFFGKGGIYILRKFFGVILLAISVKFFTGNIVKIIETMNEALQK","258342 257707 [Shorter 263 558 99]","TIGR ID: PG0224","conserved hypothetical protein (probable integral membrane protein)","Inner membrane, Cytoplasm","A few significant hits and numerous weak hits in gapped BLAST; e.g. residues 22-205 are 30% similar to gb|AAC65944.1| conserved hypothetical integral membrane protein of Treponema pallidum, residues 16-199 are 27% similar to gb|AAG58540.1|AE005567_1 orf, hypothetical protein of Escherichia coli O157:H7, residues 13-192 are 27% similar to dbj|BAA81513.1| 199aa long hypothetical protein of Aeropyrum pernix. ","
InterPro
IPR002771
Family
Multiple antibiotic resistance (MarC)-related proteins
PF01914\"[16-203]TMarC


","BeTs to 8 clades of COG2095COG name: Integral membrane proteins of the MarC familyFunctional Class: SThe phylogenetic pattern of COG2095 is aM-K-q--Eb-------lIN-Number of proteins in this genome belonging to this COG is 1","***** PF01914 (Uncharacterised protein family) with a combined E-value of 6.2e-17. PF01914A 69-99 PF01914B 104-131 PF01914C 167-199","Residues 22-199 are 28% similar to a (PROTEIN TRANSMEMBRANE INTERGENIC REGION) protein domain (PD006289) which is seen in YG77_METJA.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Mar 8 08:40:57 MST 2001","Thu Mar 8 08:40:57 MST 2001","Thu Mar 8 08:40:57 MST 2001","Thu Mar 8 08:40:57 MST 2001","Thu Mar 8 08:40:57 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 8 08:40:57 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 16 to 203 (E-value = 1e-13) place PG0204 in the MarC family which is described as MarC family integral membrane protein (PF01914)","Thu Mar 8 08:40:57 MST 2001","34540076","","","","","","1","","","PG0224" "PG0205","259732","258578","1155","ATGAGTACAAATATAAGCCTATTCGCCCAAGTTATCCGCCTGTTGCCTCGTCCATTGATTAAGAAGCTCTCTACAGAGTTTCAGGTAGACAAGCACAGCAAGCATTTCACCTCATGGCAGCACTTAGTGAGCATGATTTTCAGCCAATTCTCAAGCTGTATCTCCTTACGCGAGATTAGTAATGGCTTACGCTCAGCCACAGGTAACCTCAACCACTTAGGCATATGCACAGCACCCTCTAAGTCCAATTTATCTTATCAGAACGAGCACCGTACCTCAGACTTCTTTCGAGCGTGCTATTATGCCTTGCTAGATTATTTCGGACAGCAGGGTATGGGGCAAGGGCGTAAGTTTCGTTTTAAGCAACCCGTCAAGCTTCTAGACTCTACGACCATTACCCTTTGCCTTGCCCTATACGATTGGGCTAAATACACACATACGAAGGGAGCTGTTAAGCTTCATACACTCTTAGACTTCAAGACTCTGTTGCCTGAATATGTGCATATTAGTGATGGTAAAGGACATGATGGCAAGATGGCCAATTCTATTCCTATCCCAGCAGGAAGTATCGTCGTGGCTGACCGTGGCTATGCTGATACCGCCTTGCTCAATAGTTGGGACAGCACCCAAGTGAGTTTTGTAGTACGCCACCCAAGGTCCTTAAAATATGAGGTTATTCAAGAGTTGGAACTCCCAGAACATGGGCATCAGCAAATACTCGTAGATCAGAGAGTACGGCTCACAGGCGTTCAGACGCAAGGCAAGTACACTAAGCCATTGAGGCATATTGCCCTCTACAACGAGCAACATGGCGATGTCGTTGAGTTATTGACCAACATAGACACCCTTGCAGCAAGTAGTATAGCCTTGCTGTATCGTTCAAGATGGCTTATCGAGATTTTCTTTCGGAATTTGAAGCAACGCCTCAGCATGAAGGCCTTTCTTGGAACAACGCGCAATGCCGTAGAGGTGCAAATATGGACGGCTCTTATTACAATGCTTTTGATGGTCTATCTCAAGAGTATCGCCAAATATCGGTGGTGCTTGTCTAATCTTGTCTCTTCGCTAAGAATCAACACATTTACCAAGATGGATCTGATGCAATGGCTTAATGAGCCGTTTACGCCTCCGCCAGAGCCCGAAAATCAGCTCTTT","10.20","16.13","44087","MSTNISLFAQVIRLLPRPLIKKLSTEFQVDKHSKHFTSWQHLVSMIFSQFSSCISLREISNGLRSATGNLNHLGICTAPSKSNLSYQNEHRTSDFFRACYYALLDYFGQQGMGQGRKFRFKQPVKLLDSTTITLCLALYDWAKYTHTKGAVKLHTLLDFKTLLPEYVHISDGKGHDGKMANSIPIPAGSIVVADRGYADTALLNSWDSTQVSFVVRHPRSLKYEVIQELELPEHGHQQILVDQRVRLTGVQTQGKYTKPLRHIALYNEQHGDVVELLTNIDTLAASSIALLYRSRWLIEIFFRNLKQRLSMKAFLGTTRNAVEVQIWTALITMLLMVYLKSIAKYRWCLSNLVSSLRINTFTKMDLMQWLNEPFTPPPEPENQLF","259759 258578","Member of the IS5 family of IS elements.TIGR ID: PG0225","ISPg4 transposase","Inner membrane, Cytoplasm","PG0205 is equivalent to the previously sequenced AF148127 transposase of Porphyromonas gingivalis in GenBANK. See also AB009361, AB003149. Residues 20-337 are 27% similar to a transposase from B.subtilis (AB031551).","
InterPro
IPR002559
Domain
Transposase, IS4-like
PF01609\"[124-335]TTransposase_11
InterPro
IPR012337
Domain
Polynucleotidyl transferase, Ribonuclease H fold
SSF53098\"[185-350]TRNaseH_fold


","No hit to the COGs database.","***** PF01609 (Transposase (IS4 family)) with a combined E-value of 1.4e-08. PF01609B 288-309","Residues 271-336 are 45% similar to a (TRANSPOSASE PUTATIVE PLASMID ELEMENT) protein domain (PD003301) which is seen in Y4ZB_RHISN.","","Wed Jun 13 14:25:30 MDT 2001","Mon Mar 6 13:42:11 MST 2000","Wed Jun 13 14:25:30 MDT 2001","Wed Jun 13 14:25:30 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Jun 13 14:25:30 MDT 2001","Wed Jun 13 14:25:30 MDT 2001","","Fri Feb 9 09:12:39 MST 2001","Fri Feb 9 09:09:43 MST 2001","Wed Jun 13 14:44:18 MDT 2001","Mon Dec 4 11:42:07 MST 2000","Wed Jun 13 14:25:30 MDT 2001","Wed Jun 13 14:25:30 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG0205 is paralogously related to PG1461, PG1114, PG1920, PG0043, PG1447, PG0868, PG0445, PG0162, and PG0016, all predicted ISPg4-related transposases.","Fri Feb 9 09:09:43 MST 2001","Wed Jun 13 14:25:30 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 124 to 335 (E-value = 6.9e-43) place PG0205 in the Transposase_11 family which is described as Transposase DDE domain (PF01609)","Wed Jun 13 14:25:30 MDT 2001","34540077","","Sawada,K., Kokeguchi,S., Hongyo,H., Sawada,S., Miyamoto,M.,Maeda,H., Nishimura,F., Takashiba,S. and Murayama,Y.Identification by subtractive hybridization of a novel insertionsequence specific for virulent strains of porphyromonas gingivalis. Infect. Immun. 67 (11), 5621-5625 (1999)","Nagai,T., Phan Tran,L.S., Inatsu,Y. and Itoh,Y.A new IS4 family insertion sequence, IS4Bsu1, responsible forgenetic instability of poly-gamma-glutamic acid production inbacillus subtilis. J. Bacteriol. 182 (9), 2387-2392 (2000)","Fri Feb 9 09:12:39 MST 2001","Fri Feb 9 09:12:39 MST 2001","1","","","PG0225" "PG0206","262621","259931","2691","ATGAAAGAGAACAAACTATTCCGTATCGGGATACTTGCCATCGTTGCCCTCTTGCTCACAGGATGCAAGGGGAGCGATACGCATTTTATCACCGATGCAGACTTCCGCAAACAGGTGCAAGAAGATCTGAGAGTAAAACGCGAAGCTCTATCCGAAGGCAATCTCTTCGAAGTGCTGGAGCGCGATTCGCTCCGTACCGAAGAGCGCGAAGCACTGGAGTTCCTGTATGCCTACATGACTCTGCCGGACATCGTGGACTACTCGGGCGACTTCTACTTGCAGAATGTACGCGAGAGCTTCCGCGCAAGAGAAGAAATGTCGTGGGGTAAGGAAGTGCCCGAACTGCTCTTCCGCCACTTCGTGCTGCCCATACGCGTGAACAATGAGAACCTCGACAGCAGCCGCATGGTGTTCTATGCCGAGCTGAAAGAGCGAGTAAAAGGTATGAGCATGAAAGAAGCCGCTCTGGAGGTGAACCACTGGTGCCACGAGAAAGCTACATACAGCCCCAGCGACCCACGCACTCGCTCTCCGCTTGCAACGGTGAAGAATGCTCTCGGACGTTGCGGTGAGGAGTCCACCTTCACGGTGGCTGCCCTGCGCTCGGTAGGTATTCCTGCCAGACAGGTCTATACGCCGCGCTGGGCACATACGGACGACAACCACGCATGGGTGGAGGTATGGGTAGATGGCAAATGGTACTTCATCGGAGCCTGCGAACCTGCAGCCGAGCTGAACGATGCATGGTTCAACAGCTCCGTTGTCCGCGCCATGCTGACGCATACGCGGGTCTTCGGTCGTTACGAAGGTCCGGAAGAGAAGTTGTTCCGCACGGCCAACTACACGGAGATCAACTGTATCGACAACTATGCCCCGACGGAAATGATCGAAGTCAAAGTCACCGACCGCTCCGGTGCTGTGGTGGAAGGGGCCGATATTCGTTTCTGCATCTACAACTATTCGGAGTTCTATCCCGTGGTGACGAAGCAATCCGATGCTCAAGGACTGGCTTCCCTGCGTGTAGGCAAAGGCGACATGCTCATTTGGGCAGCCAAGGACGGACTCTTCGGTTATGCCCTGTCCAAGGCCGACGATCGCAAACCGCTGGCCATCGCACTGGACAACTTCGAAGCACAGCCCGAATGGGCCGATTTCAAAATCGTACCACCTGCAGGAGATCCCATCCCTACTACCTGCTCTCCACAGCAGATCAGCACGAACGACGCCCGTCTCCTGCGTGAGGATTCCATTCGGGCAGCCTATGAAGCCACATTCGCCACAGCCGAGCAGTCTGCAGCACTGGCTGCCGAATTGGGTGTGGATGCGCCTGCGCTGACAGGCATCTTGCAAACGAGCCGCGGCAACCATGCCGACATCGAAGGTTTCCTACGCTCCGTAGAAGCCGGAAAAGCACGCCAAAGAGCAATGGATCTGCTACAGACCGTTTCGCCCAAGGACCTGACCGACACGCCGGAGTCGCTCCTCAAAGTAATCTTCCGCGACATGGCCGAGCCGGCTCCCGAAGCGGCAAGCGGTGAAGCGTACCGGCACCACCTGCGCTATGTGGCATCGCCTCGTATCTATACGGAGATGCTCAGCTCATTCGTCCCTACACTCCGCAGCATCCTCACCGCCAAAGAGCAGGAAGCCATGCGCCAAGATCCGGCCGAACTGGTTCGCTGGGTAAGCTCGAACATCCGTCTGGACACCCTCTACAACACACAGTACACCACCATCACTCCGGTCGGTGTATGGCGAGCCAAACGAGCAGACCTCCGCTCGATGGGGATCTTCTTCGTAGCCATGGCGCGCACACTCGGCATACCGGCCCGGTACGACGAGGTGACGGGCAAGATCCAATACAGCAAGGAACTGATGCCGCTGCGTTGGAGCGACGTGAATCTGCGCGAGAGCAAGACCGCCCTCAAGGAGCAGGGTTCGCTCGCATTGGATTATTCGCCGACAGCATTGGCCCCCAATCCCAACTACTACAGCCGCTTCACAGTGGCCGAGCTACAACCTTCGGGCATCATCCGCACGCTCTATTATGATGAAAATGAACCGACTGACCTGAAGACGCTCTTCGACCGCCCCAAGGAAATGAATGCAGGTCATTATTTCCTCGTTACCGGTACGCGTATGGCCAGTGGCAGCGTATTGTGCCGGATGAGGAAGTTCACGGTAGAAGCCGGTAAGACTGCTCGCCAACCGCTCGAACTGCTACACGATTCGACCGACATTCAGGTGATCGGCTCCATCAATGCCGAACAGCTCTACCACGATCTCTCCCATGCAGAAGACCGCTCGCTCCTCTCTACCACAGGACGCGGCTACTTCGCGATGGCCATACTCGGAGCCGGTCAGGAGCCTACCAACCATGCTCTGAAAGATTTGGAGAAGGTGAAAGCCGACTTCGAGCAGTGGGGGCGCAAGCTGATCCTCCTCTTCCCCGATGCCGACGGACACAAGCGTTACAAACCGGCAGACTTCCCCTCCCTGCCCGAGACAGCCGTATTCGGACTGGATATTCAAGGCCGCAATGCCGCCATGATACGGGAGGCTGCGAACCTGCCTGATGCGACCAATCTGCCGATCGTCATCATCGCCGACTCATTCGGTCGTGTCGTATTCGTCCGTCAAGGCTATACGATCGGTCTGGGCGAGCAGATGATGCAAGTAATCCACCGCCTC","5.80","-13.17","100872","MKENKLFRIGILAIVALLLTGCKGSDTHFITDADFRKQVQEDLRVKREALSEGNLFEVLERDSLRTEEREALEFLYAYMTLPDIVDYSGDFYLQNVRESFRAREEMSWGKEVPELLFRHFVLPIRVNNENLDSSRMVFYAELKERVKGMSMKEAALEVNHWCHEKATYSPSDPRTRSPLATVKNALGRCGEESTFTVAALRSVGIPARQVYTPRWAHTDDNHAWVEVWVDGKWYFIGACEPAAELNDAWFNSSVVRAMLTHTRVFGRYEGPEEKLFRTANYTEINCIDNYAPTEMIEVKVTDRSGAVVEGADIRFCIYNYSEFYPVVTKQSDAQGLASLRVGKGDMLIWAAKDGLFGYALSKADDRKPLAIALDNFEAQPEWADFKIVPPAGDPIPTTCSPQQISTNDARLLREDSIRAAYEATFATAEQSAALAAELGVDAPALTGILQTSRGNHADIEGFLRSVEAGKARQRAMDLLQTVSPKDLTDTPESLLKVIFRDMAEPAPEAASGEAYRHHLRYVASPRIYTEMLSSFVPTLRSILTAKEQEAMRQDPAELVRWVSSNIRLDTLYNTQYTTITPVGVWRAKRADLRSMGIFFVAMARTLGIPARYDEVTGKIQYSKELMPLRWSDVNLRESKTALKEQGSLALDYSPTALAPNPNYYSRFTVAELQPSGIIRTLYYDENEPTDLKTLFDRPKEMNAGHYFLVTGTRMASGSVLCRMRKFTVEAGKTARQPLELLHDSTDIQVIGSINAEQLYHDLSHAEDRSLLSTTGRGYFAMAILGAGQEPTNHALKDLEKVKADFEQWGRKLILLFPDADGHKRYKPADFPSLPETAVFGLDIQGRNAAMIREAANLPDATNLPIVIIADSFGRVVFVRQGYTIGLGEQMMQVIHRL","262768 259931","TIGR ID: PG0226","conserved hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04 with exception of a strong match to BT4412.","
InterPro
IPR002931
Domain
Transglutaminase-like
PF01841\"[184-239]TTransglut_core
noIPR
unintegrated
unintegrated
PS51257\"[1-22]TPROKAR_LIPOPROTEIN
SSF54001\"[78-284]TSSF54001


","BeTs to 4 clades of COG1305COG name: Transglutaminase-like enzymes, putative cysteine proteasesFunctional Class: EThe phylogenetic pattern of COG1305 is a-Tk-QvC-bRh---------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Wed Jun 13 14:28:33 MDT 2001","","Wed Jun 13 14:28:33 MDT 2001","Wed Jun 13 14:28:33 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Jun 13 14:28:33 MDT 2001","Wed Jun 13 14:28:33 MDT 2001","","","Mon Jan 5 14:36:15 2004","Mon Jan 5 14:36:15 2004","Thu Mar 8 08:43:04 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 8 08:43:04 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 184 to 239 (E-value = 1.1e-05) place PG0206 in the Transglut_core family which is described as Transglutaminase-like superfamily (PF01841)","Thu Mar 8 08:43:04 MST 2001","34540078","","","","","","1","","","PG0226" "PG0207","264068","262686","1383","ATGGCTAAGGAGAAAACGATCTACGTCTGCCGTTCGTGCGGAACCAAATACGCCAAATGGCAAGGCAACTGCAATGCCTGTGGAGAGTGGAACTGCATTGATGAGGAGAAGGTGCCGGCACCGGCATCGGGCAAGCATGCAGCCAAGAGTTTTATGCCTCGGGAGCAGGACAACCGGCCAAGACTCTTACAGGATGTGGAGTCCGGCGATGAAGAGCGTATTCGCCTCGGCGATGAAGAGTTCGACCGCGTACTGGGTGGAGGAATTGTCAAAGGAGCATTTGTCCTGCTTGGCGGCGAGCCGGGAATCGGTAAGTCCACGCTTATCCTCCAGACGGTGCTGCGTCTGCCGCAGTTGCGCACGCTCTATGTGTCGGGCGAAGAAAGTGCCCGACAACTGAAGATGCGCGCCGAACGACTGGGGCAAGCCATGAATGGGTGCTACGTATACTGCGAAACGAATATAGAGAGGATACTCTCCCGTGCAGAAGAACTCACACCCGATCTCCTCGTGATAGACTCTATACAGACGGTCTATACCGAGGAAATGGAAAGCTCGGCCGGCAGCGTGGGGCAGATCCGCGAATGTGCCGCCTTACTGCTCAAATACTGCAAGACTACGGGTATCCCCGTCATCGTCATCGGACACATCACCAAAGAAGGTAGCATAGCCGGACCGAAGGTGCTGGAGCATATAGTGGATACGGTGCTTCTCTTCGACGGGGATAAGCATCATCTCTACCGGATACTCCGAGGACAGAAGAACCGCTATGGCAGTACTTCCGAGCTGGGGATATACGAGATGCGGCAGGACGGTCTGCGTGGCGTGGAGAATCCGAGCGAACATCTCATCACACGCAATAGGGAAGACCTCAGTGGCATAGCCATAGCCGTAGCGATGGAGGGCATTCGCCCGATACTCATCGAAGCGCAGGCTTTGGTCAGCTCGGCCATTTATGCCAATCCGCAGCGTTCGGCCACGGGCTTCGATATTCGGCGGATGAACATGCTCTTAGCCGTACTGGAGAAACGTGCCGGCTTCAAGCTCATACAGAAGGATGTGTTTCTGAACATTGCCGGAGGTATCAAAATAGCCGATCCGGCTACGGATCTGGCCGTTATCTCGGCAGTGCTGGCGTCGAGTCTGGACATCGTTATCCCGCCGGCCGTATGCATGACGGGCGAGGTCGGACTCTCCGGAGAGATACGTCCCGTGAGCCGCATCGAGCAGCGCATAACGGAAGCGCGTCGCATAGGGTTCAAAGAGATATTGGTACCGGCCGATAATTTCCGGCAGGAGGATGCCGGCCGCTTCGGTATTCGGCTCGTGCCGGTCAGAAAGGTGGAGGAAGCCTTCCGCCATCTGTTCTCGAAAGGAAGAGAA","7.30","1.26","50893","MAKEKTIYVCRSCGTKYAKWQGNCNACGEWNCIDEEKVPAPASGKHAAKSFMPREQDNRPRLLQDVESGDEERIRLGDEEFDRVLGGGIVKGAFVLLGGEPGIGKSTLILQTVLRLPQLRTLYVSGEESARQLKMRAERLGQAMNGCYVYCETNIERILSRAEELTPDLLVIDSIQTVYTEEMESSAGSVGQIRECAALLLKYCKTTGIPVIVIGHITKEGSIAGPKVLEHIVDTVLLFDGDKHHLYRILRGQKNRYGSTSELGIYEMRQDGLRGVENPSEHLITRNREDLSGIAIAVAMEGIRPILIEAQALVSSAIYANPQRSATGFDIRRMNMLLAVLEKRAGFKLIQKDVFLNIAGGIKIADPATDLAVISAVLASSLDIVIPPAVCMTGEVGLSGEIRPVSRIEQRITEARRIGFKEILVPADNFRQEDAGRFGIRLVPVRKVEEAFRHLFSKGRE","264068 262686","TIGR ID: PG0227","radA-related DNA repair protein (sms)","Cytoplasm","This sequence is similar to CT298 and to BT2306.Numerous significant hits to DNA repair protein in gapped BLAST; e.g. residues 1-453 are 48% similar to emb|CAB11863.1| DNA repair protein homolog of Bacillus subtilis, residues 1-429 are 46% similar to dbj|BAB03823.1| DNA repair protein of Bacillus halodurans, residues 1-429 are 46% similar to gb|AAK06162.1|AE006436_11 DNA repair protein of Lactococcus lactis subsp. lactis.","
InterPro
IPR001984
Family
Peptidase S16, Lon protease
PR00830\"[99-118]T\"[392-411]T\"[415-433]TENDOLAPTASE
InterPro
IPR003593
Domain
AAA+ ATPase, core
SM00382\"[91-243]TAAA
InterPro
IPR004504
Family
DNA repair protein RadA
PR01874\"[10-34]T\"[83-111]T\"[123-140]T\"[173-197]T\"[212-240]T\"[247-273]T\"[321-344]TDNAREPAIRADA
TIGR00416\"[1-452]Tsms
InterPro
IPR008269
Domain
Peptidase S16, lon C-terminal
PF05362\"[307-458]TLon_C
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[54-274]TG3DSA:3.40.50.300
PTHR10046\"[371-456]TPTHR10046
SSF52540\"[54-278]TSSF52540
SSF54211\"[292-460]TSSF54211
SSF57716\"[4-62]TSSF57716


","BeTs to 10 clades of COG1066COG name: Predicted ATP-dependent serine protease (Sms family)Functional Class: OThe phylogenetic pattern of COG1066 is -----Qvcebrhuj---linxNumber of proteins in this genome belonging to this COG is 1","***** IPB001984 (ATP-dependent serine proteases, Lon family) with a combined E-value of 7.7e-09. IPB001984I 370-424","Residues 73-265 are 50% similar to a (PROTEIN DNA ATP-BINDING DNA-BINDING RECOMBINATION DAMAGE) protein domain (PD000229) which is seen in RADA_SYNY3.Residues 335-453 are 46% similar to a (PROTEASE ATP-BINDING HYDROLASE SERINE PROTEIN) protein domain (PD001169) which is seen in RADA_BACSU.Residues 266-334 are 50% similar to a (PROTEIN DNA REPAIR RADA) protein domain (PD007508) which is seen in RADA_SYNY3.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Apr 11 15:45:44 2002","Wed Dec 17 10:19:08 2003","Thu Apr 11 15:45:44 2002","Thu Mar 8 08:51:19 MST 2001","Thu Mar 8 08:51:19 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 8 08:51:19 MST 2001","-54% similar to PDB:1Z0B Crystal Structure of A. fulgidus Lon proteolytic domain E506A mutant (E_value = 4.0E_11);-54% similar to PDB:1Z0C Crystal Structure of A. fulgidus Lon proteolytic domain D508A mutant (E_value = 1.5E_10);-54% similar to PDB:1Z0E Crystal Structure of A. fulgidus Lon proteolytic domain (E_value = 1.5E_10);-54% similar to PDB:1Z0G Crystal Structure of A. fulgidus Lon proteolytic domain (E_value = 1.5E_10);-54% similar to PDB:1Z0T Crystal Structure of A. fulgidus Lon proteolytic domain (E_value = 1.5E_10);","","","No significant hits to the Pfam 11.0 database","Thu Mar 8 08:51:19 MST 2001","34540079","","","","","","1","","","PG0227" "PG0208","265040","264117","924","ATGATGAAGATACTACCACACGTTACCAACGAAACGGCTCCCTTGCGCACTGTCGTACTGGGGTTGCCGGATTCGACCGGCGGAGCACCTGCTCTCGCCGACACCTACGATGCCAAGAGTTATGAATCCGTGTTACGGGGCACTTATCCTTCGGACGAGGATATCAAGATAGAAATGGATGCCGTACTCGATGTACTGGTGCGTCATGGCATAGAGGTGCTCCGTCCCGAGCCGATAGCAAACTACAACCAGATATTTGCCCGCGATGTGGCTTTTGCCATCGATGACAAACTCTTCGTATCGAACCTGATAGCCGATCGTGCCCGCGAGTCCGAAGCCTTTTCGCCCATTTGGGATTGTGTCGGAGAGAGCCATCTGGTACGCCTTAGCGAAGATATTCATGCCGAAGGCGGAGACATCCTGTTATATGACGATATTCTTTTCATAGGCACCTACCTTCAGAAGGATTATCCTTCCTTCAAGACGGCCCGAACCAATGCACGGGCTGTAGACTTCTTCCGCGAATTTTTCCCACACAAGACCATCATACCGATAGAGCTGATCAAGCACGACACCGATCCCATGCGCTCGGTGCTCCACCTCGACTGCGCTTTCCAACCCGTAGGCCGCAGCCGCGCCATAGTCTACCGCCAAGGATTCCTGCACTCTGAGAGCTTCGGCCTGATCACAGAGATATTCGGTGGCCGGGACAACCTGTTCGAGATTACACCCGAGGAAGCCTATATGATGAATACCAATATATTCTCTATCAGTCCCGACACGGTGATAAGCGAACAGAACTTCGTACGCCTGAACAACCACCTGCGTGAGGCATGGGGGATGACCGTAGAGGAAGTACCCTACGCCGAGATCTCCAAGCAGGGTGGACTGCTCCGCTGCTCCACGATGCCGTTGGTTCGCGAA","4.70","-15.95","34788","MMKILPHVTNETAPLRTVVLGLPDSTGGAPALADTYDAKSYESVLRGTYPSDEDIKIEMDAVLDVLVRHGIEVLRPEPIANYNQIFARDVAFAIDDKLFVSNLIADRARESEAFSPIWDCVGESHLVRLSEDIHAEGGDILLYDDILFIGTYLQKDYPSFKTARTNARAVDFFREFFPHKTIIPIELIKHDTDPMRSVLHLDCAFQPVGRSRAIVYRQGFLHSESFGLITEIFGGRDNLFEITPEEAYMMNTNIFSISPDTVISEQNFVRLNNHLREAWGMTVEEVPYAEISKQGGLLRCSTMPLVRE","265055 264117","TIGR ID: PG0228","conserved hypothetical protein","Cytoplasm","Two significant hits in gapped BLAST; e.g. residues 52-308 are 31% similar to dbjBAB05498.1 BH1779~unknown conserved protein of Bacillus halodurans, residues 62-264 are 28% similar to pirC69856 conserved hypothetical protein ykgA of Bacillus subtilis.","
InterPro
IPR003198
Domain
Amidinotransferase
PF02274\"[10-307]TAmidinotransf
noIPR
unintegrated
unintegrated
G3DSA:3.75.10.10\"[13-305]TG3DSA:3.75.10.10
PTHR12737\"[83-264]TPTHR12737
PTHR12737:SF2\"[83-264]TPTHR12737:SF2
SSF55909\"[4-308]TSSF55909


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 132-264 are 30% similar to a (YKGA) protein domain (PD085177) which is seen in O34497_BACSU.","","Wed Jun 13 14:48:23 MDT 2001","","Wed Jun 13 14:48:23 MDT 2001","Wed Jun 13 14:48:23 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Jun 13 14:48:23 MDT 2001","Wed Jun 13 14:48:23 MDT 2001","","","Thu Mar 8 08:57:47 MST 2001","Tue Jul 13 14:33:21 2004","Thu Mar 8 08:57:47 MST 2001","","Tue Jul 13 14:33:21 2004","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Jul 13 14:33:21 2004","No significant hits to the PDB database (E-value < E-10).","","","Residues 10 to 307 (E-value = 3.5e-11) place PG0208 in the Amidinotransf family which is described as Amidinotransferase (PF02274)","Thu Mar 8 08:57:47 MST 2001","34540080","","","","","","1","","","PG0228" "PG0208.1","265190","265480","291","ATGAAAAGAGCTTCCTACTGTCGGAAGATTACGAGCCAAAAACGGTCGGATTGCGGTGCGTGTTTTGGCGAAAACACGCGCGAGAAATTTTTCGTTTTGGTTCCAAAAATTTTTACTTCTCGCGCCACAACGAAAAAATTTTCGCGCCACGTCTTTTCCAACCGTATTCCGGCTTTTTCTCGAACGACAAAAGAGAAAAGGTGTCTATGTGCCATCGGTAACTTCGGACACGTGGCGGATGCCTCATCGAGTAGGCCAAAAATGCCTACCTTTGGGGCAGTTGTAAAAACT","","","10898","MKRASYCRKITSQKRSDCGACFGENTREKFFVLVPKIFTSRATTKKFSRHVFSNRIPAFSRTTKEKRCLCAIGNFGHVADASSSRPKMPTFGAVVKT","","NO TIGR ID corresponds to this gene.","hypothetical protein","Periplasm, Cytoplasm","No hit found in gapped BLAST.","
InterPro
IPR012456
Family
Protein of unknown function DUF1661
PF07877\"[33-67]TDUF1661


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Thu Mar 8 09:02:34 MST 2001","","Thu Mar 8 09:02:34 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 16-51 are 61% similar to PG1694.1, a hypothetical protein. Similarities are also seen to PG0713.1 and PG1870, hypothetical proteins.","Thu Mar 8 09:02:34 MST 2001","Thu Mar 8 09:02:34 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Mar 8 09:02:34 MST 2001","","","","","","","1","","","" "PG0209","265512","266171","660","ATGAAATTCTTTATCGACACAGCTAATTTGGATCAGATTCGCGAGGCGAACGACATGGGTGTCTTGGACGGCGTTACTACCAATCCGTCTCTGATGGCGAAAGAGGGTATTAGTGGGAAAGACAATTGCATGAGGCACTACTTGGCCATCTGTGAGATTGTCGATGGAGATGTGAGTGCCGAAGTGATAGCTACGGACTACGAAGGTATGATTCGCGAGGGCGAGGAGTTGGCCGCTCTGCATCCGCAGATCGTGGTTAAGGTGCCTTGCACGGCCGAAGGTATCAAGGCTATCAAATACTTCAGCGATAAGGGCATTCGTACCAACTGTACGCTCATCTTTACCGTAGGCCAGGCCCTGCTCGCCGCCAAAGCCGGAGCTTCGTATGTGTCGCCGTTCGTCGGCCGATTGGATGACATCGCCAGCGATGGCATCAAGCTGGTGGAGAATATCGTAGCTATGTTCGGATTCTATCGCTACGAGACGGAGGTACTTGCTGCCAGCATCCGCCATACGCAGCACATTATTCAGTGCCTCGAAGCCGGTGCCGATGTGGCTACTTGCCCGCTCAACGCCATCAAGGGTCTGCTCAAGCACCCTCTTACGGATAGTGGATTGAAGGCTTTCTTGGAAGATCATCGACGAGTAAACGAAGGCAAA","5.20","-6.84","23876","MKFFIDTANLDQIREANDMGVLDGVTTNPSLMAKEGISGKDNCMRHYLAICEIVDGDVSAEVIATDYEGMIREGEELAALHPQIVVKVPCTAEGIKAIKYFSDKGIRTNCTLIFTVGQALLAAKAGASYVSPFVGRLDDIASDGIKLVENIVAMFGFYRYETEVLAASIRHTQHIIQCLEAGADVATCPLNAIKGLLKHPLTDSGLKAFLEDHRRVNEGK","265512 266171 [Shorter 273 639 99]","TIGR ID: PG0230","transaldolase","Cytoplasm","This sequence is similar to CT313.Numerous significant hits to transaldolase (pentose phosphate) proteins in gapped BLAST; e.g. residues 1-212 are 55% similar to dbj|BAB07504.1| transaldolase (pentose phosphate) of Bacillus halodurans, residues 1-218 are 49% similar to gb|AAD35383.1|AE001711_6 transaldolase-related protein of Thermotoga maritima, residues 1-212 are 53% similar to gb|AAB98962.1| transaldolase of Methanococcus jannaschii.","
InterPro
IPR001585
Family
Transaldolase
PTHR10683\"[1-218]TTransaldolase
PF00923\"[2-220]TTransaldolase
PS00958\"[84-101]TTRANSALDOLASE_2
PS01054\"[24-32]TTRANSALDOLASE_1
InterPro
IPR004731
Family
Transaldolase C
TIGR00875\"[1-217]TtalC
InterPro
IPR013785
Domain
Aldolase-type TIM barrel
G3DSA:3.20.20.70\"[1-215]TAldolase_TIM
noIPR
unintegrated
unintegrated
PTHR10683:SF1\"[1-218]TPTHR10683:SF1
SSF51569\"[1-215]TSSF51569


","BeTs to 10 clades of COG0176COG name: TransaldolaseFunctional Class: GThe phylogenetic pattern of COG0176 is -m--YqvcEbrhuj----in-Number of proteins in this genome belonging to this COG is 1","***** IPB001585 (Transaldolase) with a combined E-value of 1.8e-37. IPB001585A 17-34 IPB001585B 54-77 IPB001585C 83-113 IPB001585D 142-170 IPB001585E 195-216","Residues 104-198 are 53% similar to a (TRANSFERASE TRANSALDOLASE PENTOSE SHUNT PROTEIN) protein domain (PD003884) which is seen in O66520_AQUAE.Residues 1-98 are 53% similar to a (TRANSALDOLASE-LIKE PROTEIN TRANSFERASE) protein domain (PD009608) which is seen in TAL_METJA.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Mar 22 15:47:47 MST 2000","Thu Mar 8 09:23:15 MST 2001","Thu Mar 8 09:04:47 MST 2001","Thu Mar 8 09:04:47 MST 2001","Thu Mar 8 09:04:47 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 8 09:04:47 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 2 to 220 (E-value = 4e-64) place PG0209 in the Transaldolase family which is described as Transaldolase (PF00923)","Thu Mar 8 09:04:47 MST 2001","34540082","","","","","","1","","","PG0230" "PG0211","266171","267466","1296","ATGATCCCTCGCTTTTTCCGGAAATATTCTATCGCATTAGCCTGCATCAGCGGGCTAATGTCGTTTTCGGCCTATACCGGTTGCCAAGTTGCAGGGGTAGCGCATTCGTCGAGGAGTGAGGAAGTCGGGAGTCAGACTGCTCATTCGGAGCAGGAGATTTCGGTCGCAACCCCAAGAGAGGAGGTACGGGTAGTTGTCGGTGCAGAGAGGACAGAGCTGCTCCTGCCTCTTCTCAGAGACAAGCGTGTGGCACTGGTGGCTAATGCTACGAGCGTGGTGGGGACGGAGCGGGAACATCTTCTTGACAATCTGCTTCGGCAGGGAGTCAATGTCGTCAAGATCTTAGGGCCTGAACACGGCTTCCGTGGAGATGCCGATGCCGGGGCAACGGTCAAGGATGAACGGGATGTCAGGACGGGAATCCCTATCGTTTCGCTCTACGGCAAAAACAAGAAACCTACTCCTCGAATGTTGGCCGACGTCGATGTGCTGCTATTCGATATGCAGGATGTCGGGACTCGCTTCTTTACTTATATCAGTACGCTGCACTATGTGATGGAGGCTTGTGCCGAGGAGCAGAAAAAGCTGATCGTTACTGATCGGCCGAACCCGAACGACTACGTGGATGGTCCCATCTTACAAGATGATTGCCGTTCGTTTGTCGGAGTGGATCCGCTGCCTATTCTTCATGGACTGACGATAGGAGAGCTGGCCAATATGATCAACGGCGAGGGCTGGCTGGGTAAGAAGGAGATGAAGTGCGATCTGACTGTAGTTCCGATGTCGGGTTGGAAGCATGGACAGGAGTACGCCTTGCCGGTGAAGCCGAGCCCCAATCTCCCTACAGCGAATGCCATAGCCTGGTATCCTTCGCTCTGTCTGTTCGAGGCTACGATCATGAGTGTCGGGCGAGGGACCGATTTCCCGTTTGAGGTCTTGGGTTATCCCAAGAAAGTATTCGGCTCTTTCGTTTTCGTTCCACGACCTATTCGCGGTATGGATAGCAATCCACTCTATAAAGGAAGACACTGTTACGGTGTCGATCTCCGAGGCGAAAAAGCTCCACGGGGTCTGTCTCTTCAGTTGCTGATCCGTTATTACCAGACTGCTCGACGGGAGGGCATTAAGTTTGTGAACAGGAAACAGATGTTCAATCTTTTGGCAGGAACGAAAGAATTGGCACAGCAGATCGAAAAAGGCCGGACAGAAGAGCAGATCCGAGCCTCTTGGCAATCGGATCTCGACAAGTACCACAAATTGCGGAAGAAGTATCTGCTTTATCCCACACCGACCGAA","8.70","7.86","48339","MIPRFFRKYSIALACISGLMSFSAYTGCQVAGVAHSSRSEEVGSQTAHSEQEISVATPREEVRVVVGAERTELLLPLLRDKRVALVANATSVVGTEREHLLDNLLRQGVNVVKILGPEHGFRGDADAGATVKDERDVRTGIPIVSLYGKNKKPTPRMLADVDVLLFDMQDVGTRFFTYISTLHYVMEACAEEQKKLIVTDRPNPNDYVDGPILQDDCRSFVGVDPLPILHGLTIGELANMINGEGWLGKKEMKCDLTVVPMSGWKHGQEYALPVKPSPNLPTANAIAWYPSLCLFEATIMSVGRGTDFPFEVLGYPKKVFGSFVFVPRPIRGMDSNPLYKGRHCYGVDLRGEKAPRGLSLQLLIRYYQTARREGIKFVNRKQMFNLLAGTKELAQQIEKGRTEEQIRASWQSDLDKYHKLRKKYLLYPTPTE","Conserved hypothetical protein","TIGR ID: PG0231","conserved hypothetical protein","Outer membrane, Cytoplasm","Five significant hits using gapped BLAST including: residues 43-427 are 38% similar to gb|AAA64352.1| (L19954) hypothetical protein ybbC in B.subtilis, residues 77-427 are 38% similar to an unknown conserved in B.halodurans and residues 64-316 are 33% similar to gb|AAC68208.1| (AE001331) hypothetical protein (CT605) in C. trachomatis.This seqeunce is similar to BT2135.","
InterPro
IPR008302
Family
Uncharacterised conserved protein UCP016719
PIRSF016719\"[44-428]TUCP016719
PF07075\"[64-427]TDUF1343


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 78-349 are 42% similar to a (PROTEIN CT605 FEUA-SIGW INTERGENC REGION PRECURSOR ORF2) protein domain (PD156303) which is seen in YBBC_BACSU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","Wed Mar 22 16:36:36 MST 2000","","Wed Apr 4 17:57:01 MDT 2001","Wed Dec 10 16:40:15 2003","Wed Apr 4 17:46:46 MDT 2001","","Wed Apr 4 17:46:46 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Apr 4 17:46:46 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 64 to 427 (E-value = 1.8e-135) place PG0211 in the DUF1343 family which is described as Protein of unknown function (DUF1343) (PF07075)","Wed Apr 4 17:46:46 MDT 2001","34540083","","","","","","1","","","PG0231" "PG0212","270013","267551","2463","ATGAAGAAAAAGAATTTTTTGCTTCTTGGCATTTTCGTTGCTTTGCTGACTTTCATCGGCAGCATGCAGGCACAACAGGCCAAAGATTATTTCAACTTTGACGAACGGGGCGAGGCCTACTTCTCATTCAAAGTGCCTGATAGGGCCGTTCTACAAGAGCTGGCTCTGATCATGTCCATCGACGAGTTTGACCCCGTAACCAATGAAGCCATTGCCTATGCCAGCGAAGAGGAGTTCGAGGCATTCCTGCGCTATGGGCTCAAGCCTACATTCTTGACTCCTCCATCCATGCAGCGCGCTGTCGAGATGTTCGACTACCGCTCAGGAGAAAAATACGAATGGAATGCTTACCCCACCTATGAAGCCTATATCAGCATGATGGAAGAGTTCCAAACAAAGTATCCATCACTTTGTACTACTTCCGTCATTGGCAAGTCCGTAAAGGATCGTAAACTGATGATTTGCAAGCTGACGTCCTCTGCCAATACAGGGAAAAAGCCTCGCGTGCTCTATACTTCTACGATGCACGGAGACGAAACGACCGGATATGTGGTACTGCTCCGACTCATAGACCATCTGCTGTCGAACTACGAATCCGATCCGAGGATTAAGAACATTCTGGATAAAACGGAAGTATGGATCTGCCCTTTGACCAATCCGGACGGAGCATACAGAGCCGGAAACCACACCGTACAAGGAGCTACTCGCTACAATGCCAACAATGTCGATTTGAACCGTAACTTCAAGGATGATGTAGCCGGTGATCACCCCGATGGAAAACCTTGGCAGCCGGAGGCAACTGCATTCATGGATTTGGAAGGAAACACCTCTTTCGTGCTCGGTGCCAATATACATGGAGGAACAGAGGTGGTGAACTATCCATGGGATAATAAAAAAGAAAGACATGCAGACGATGAGTGGTACAAACTGATCAGTCGCAACTACGCAGCCGCTTGTCAGAGTATTTCCGCCAGCTACATGACCTCCGAAACCAATTCGGGAATCATCAACGGTTCAGACTGGTATGTAATTCGCGGAAGTCGTCAGGACAATGCAAATTATTTCCATCGTCTGCGAGAAATTACCCTTGAAATCAGCAACACGAAGTTGGTGCCGGCCTCTCAACTTCCAAAGTATTGGAATCTGAACAAAGAATCTCTGCTTGCTCTGATCGAAGAATCCTTATACGGCATCCATGGTACAGTGACTTCCGCTGCGAACGGACAGCCTCTCAAATGCCAGATCTTGATAGAAAACCATGACAAGCGCAACTCCGATGTTTACTCCGATGCTACCACAGGCTACTACGTACGTCCTATCAAAGCCGGCACTTATACGGTGAAATACAAAGCCGAGGGTTATCCTGAGGCAACTCGTACCATTACGATCAAGGACAAAGAAACCGTCATCATGGACATTGCATTGGGCAACTCGGTTCCTCTGCCTGTACCCGATTTCACAGCTTCTCCTATGACCATCTCAGTAGGCGAAAGCGTCCAATTCCAAGATCAAACGACAAATAACCCCACGAATTGGGAGTGGACGTTCGAAGGCGGACAGCCTGCCATGAGTACAGAGCAGAATCCGCTCGTATCCTATAGTCATCCCGGTCAGTACGACGTTACGCTCAAAGTGTGGAATGCAAGTGGTTCCAACACGATTACGAAAGAAAAATTCATCACTGTCAATGCCGTTATGCCTGTAGCTGAATTCGTCGGTACCCCGACGGAAATAGAAGAGGGCCAGACGGTATCTTTCCAAAACCAATCCACCAATGCCACCAACTACGTATGGATATTCGATGGCGGCACTCCCGCTACCAGTGAAGACGAAAACCCGACTGTGCTTTACAGCAAAGCCGGCCAATACGATGTCACGCTCAAGGCGATCAGTGCTTCCGGTGAAACGGTGAAGACGAAAGAAAAATACATCACTGTCAAGAAAGCTCCGGTCCCTGCTCCGGTAGCCGACTTCGAAGGAACACCTCGAAAAGTAAAGAAAGGCGAGACAGTTACTTTCAAAGACTTGTCTACGAACAATCCGACTTCATGGCTTTGGGTGTTCGAAGGCGGCTCTCCTGCCACCAGCACGGAGCAAAACCCGGTGGTCACCTACAATGAAACAGGCAAGTACGATGTCCAGCTGACTGCCACCAACGAGGGCGGAAGCAATGTGAAGAAAGCAGAAGACTACATTGAGGTTATCCTCGATGACAGTGTCGAGGACATAGTGGCACAGACGGGTATCGTCATTCGTCCGCAAAACGGAACGAAGCAGATCCTCATAGAAGCCAACGCTGCTATCAAAGCGATCGTTCTCTATGACATCAATGGACGGGTCGTACTCAAAACTACTCCGAATCAGCTCCGCTCGACCGTAGATCTTTCCATCCTGCCCGAAGGAATCTACACCATCAATATCAAAACGGAAAAATCCGCTCGCACGGAAAAGATCCATATCGGG","5.00","-19.50","91513","MKKKNFLLLGIFVALLTFIGSMQAQQAKDYFNFDERGEAYFSFKVPDRAVLQELALIMSIDEFDPVTNEAIAYASEEEFEAFLRYGLKPTFLTPPSMQRAVEMFDYRSGEKYEWNAYPTYEAYISMMEEFQTKYPSLCTTSVIGKSVKDRKLMICKLTSSANTGKKPRVLYTSTMHGDETTGYVVLLRLIDHLLSNYESDPRIKNILDKTEVWICPLTNPDGAYRAGNHTVQGATRYNANNVDLNRNFKDDVAGDHPDGKPWQPEATAFMDLEGNTSFVLGANIHGGTEVVNYPWDNKKERHADDEWYKLISRNYAAACQSISASYMTSETNSGIINGSDWYVIRGSRQDNANYFHRLREITLEISNTKLVPASQLPKYWNLNKESLLALIEESLYGIHGTVTSAANGQPLKCQILIENHDKRNSDVYSDATTGYYVRPIKAGTYTVKYKAEGYPEATRTITIKDKETVIMDIALGNSVPLPVPDFTASPMTISVGESVQFQDQTTNNPTNWEWTFEGGQPAMSTEQNPLVSYSHPGQYDVTLKVWNASGSNTITKEKFITVNAVMPVAEFVGTPTEIEEGQTVSFQNQSTNATNYVWIFDGGTPATSEDENPTVLYSKAGQYDVTLKAISASGETVKTKEKYITVKKAPVPAPVADFEGTPRKVKKGETVTFKDLSTNNPTSWLWVFEGGSPATSTEQNPVVTYNETGKYDVQLTATNEGGSNVKKAEDYIEVILDDSVEDIVAQTGIVIRPQNGTKQILIEANAAIKAIVLYDINGRVVLKTTPNQLRSTVDLSILPEGIYTINIKTEKSARTEKIHIG","270109 267551","Ross, et al.(2001) select PG0212 as one of fifteen vaccine candidate antigens, based on in vitro and in vivo laboratory studies of 120 candidates screened by bioinformatics techniques from the whole W50 genome.TIGR ID: PG0232","carboxypeptidase D/immunoreactive 92 kDa antigen PG21","Extracellular, Outer membrane","PG0212 is identical to a previously sequenced P.gingivalis protein in Genbank, AAD38980. Numerous significant hits to eukaryotic carboxypeptidase proteins in gapped BLAST; e.g. residues 117-482, 120-478, 117-293, 102-445 are 33%, 32%, 32%, 20% similar (respectively) to fragments (residues 35-412, 471-841, 1228-1403, 845-1195) of gbAAC36548.1 carboxypeptidase D of Aplysia californica, residues 128-510, 167-526, 107-496 are 32%, 29%, 23% similar (respectively) to fragments (residues 498-880, 67-482, 901-1283) of gbAAB96915.1 carboxypeptidase D of Anas platyrhynchos, residues 96-478, 135-490, 75-464 are 31%, 29%, 23% similar (respectively) to fragments (residues 500-882, 66-480, 903-1285) of gbAAA78903.1 carboxypeptidase of Anas sp.","
InterPro
IPR000601
Domain
PKD
PF00801\"[486-562]T\"[571-646]T\"[658-732]TPKD
SM00089\"[483-563]T\"[568-647]T\"[655-735]TPKD
PS50093\"[482-562]T\"[588-651]T\"[654-725]TPKD
SSF49299\"[479-562]T\"[564-646]T\"[651-741]TPKD
InterPro
IPR000834
Family
Peptidase M14, carboxypeptidase A
PR00765\"[143-155]T\"[167-181]T\"[241-249]T\"[282-295]TCRBOXYPTASEA
PF00246\"[123-386]TPeptidase_M14
SM00631\"[117-368]TZn_pept
PS00133\"[285-295]?CARBOXYPEPT_ZN_2
InterPro
IPR013784
Domain
Carbohydrate-binding-like fold
SSF49452\"[389-478]TCBD_4
noIPR
unintegrated
unintegrated
G3DSA:2.60.40.1120\"[397-478]TG3DSA:2.60.40.1120
G3DSA:2.60.40.670\"[481-563]T\"[564-653]T\"[654-741]TG3DSA:2.60.40.670
G3DSA:3.40.630.10\"[117-396]TG3DSA:3.40.630.10
PTHR11532\"[98-481]TPTHR11532
SSF53187\"[109-405]TSSF53187


","No hit to the COGs database.","***** IPB000834 (Zinc carboxypeptidases, carboxypeptidase A metalloprotease (M14) family) with a combined E-value of 4.7e-20. IPB000834A 117-157 IPB000834B 166-186 IPB000834C 197-242 IPB000834F 285-297 IPB000834D 239-248","Residues 512-562 are 49% similar to a (PROTEIN PROTEASE PRECURSOR SIGNAL) protein domain (PD002468) which is seen in O26812_METTH.Residues 505-734 are 35% similar to a (PROTEIN PRECURSOR GLYCOPROTEIN SIGNAL) protein domain (PD000651) which is seen in Q50244_METMA.Residues 247-475 are 32% similar to a (CARBOXYPEPTIDASE PRECURSOR SIGNAL D E HYDROLASE ZINC) protein domain (PD001916) which is seen in O77063_APLCA.Residues 166-222 are 42% similar to a (CARBOXYPEPTIDASE PRECURSOR SIGNAL HYDROLASE ZINC ZYMOGEN) protein domain (PD001729) which is seen in CBPS_STRCP.","","Wed Jun 13 14:49:07 MDT 2001","","Wed Jun 13 14:49:07 MDT 2001","Wed Jun 13 14:49:07 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Jun 13 14:49:07 MDT 2001","Wed Jun 13 14:49:07 MDT 2001","","Wed Nov 7 14:29:44 2001","Wed Apr 25 16:45:43 MDT 2001","Tue Jul 13 14:34:11 2004","Thu Mar 8 09:54:57 MST 2001","Wed Nov 7 14:29:02 2001","Wed Nov 7 14:29:02 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Jul 13 14:34:11 2004","-49% similar to PDB:1H8L DUCK CARBOXYPEPTIDASE D DOMAIN II IN COMPLEX WITH GEMSA (E_value = 7.2E_46);-49% similar to PDB:1QMU DUCK CARBOXYPEPTIDASE D DOMAIN II (E_value = 7.2E_46);-46% similar to PDB:1UWY CRYSTAL STRUCTURE OF HUMAN CARBOXYPEPTIDASE M (E_value = 7.7E_40);-43% similar to PDB:2BOA HUMAN PROCARBOXYPEPTIDASE A4. (E_value = 1.5E_14);-44% similar to PDB:2BO9 HUMAN CARBOXYPEPTIDASE A4 IN COMPLEX WITH HUMAN LATEXIN. (E_value = 7.3E_14);","","","Residues 115 to 298 (E-value = 3e-31) place PG0212 in the Zn_carbOpept family which is described as Zinc carboxypeptidase (PF00246)Residues 313 to 419 (E-value = 6.4e-46) place PG0212 in the DUF857 family which is described as Domain of unknown function (DUF857) (PF05885)Residues 486 to 562 (E-value = 1.9e-24) place PG0212 in the PKD family which is described as PKD domain (PF00801)Residues 571 to 646 (E-value = 1.7e-18) place PG0212 in the PKD family which is described as PKD domain (PF00801)Residues 658 to 732 (E-value = 1.1e-21) place PG0212 in the PKD family which is described as PKD domain (PF00801)","Tue Jul 13 14:34:11 2004","34540084","Thu Mar 8 09:54:57 MST 2001","Ross BC, Czajkowski L, Hocking D, Margetts M, Webb E, Rothel L, Patterson M, Agius C, Camuglia S, Reynolds E, Littlejohn T, Gaeta B, Ng A, Kuczek ES, Mattick JS, Gearing D, Barr IG, Identification of vaccine candidate antigens from a genomic analysis of Porphyromonas gingivalis, Vaccine 2001 Jul 20;19(30): 4135-42, PMID: 11457538.Ross,B.C., Barr,I., Patterson,M., Agius,C., Rothel,L., Margetts,M., Hocking,D. and Webb,E. Porphyromonas gingivalis polypeptides and nucleic acids. Patent: Australia (AU 98/01023)-PCT 10-DEC-1998; CSL Ltd; 45 Poplar Road; R&D; Parkville, Victoria; Australia.","","Wed Nov 7 14:29:02 2001","","1","","","PG0232" "PG0212.1","270220","270471","252","ATGTTCCCAAAAGGAGATTGTTGCATGGGAGTTTCATTGAGCTCTTTTGCTGCAGAGCAGATTCTTAGTGTCTTCGGGAAAGGTCAAACCTTCGGTATATGGACACAGCAAGCAAACAGAAATTTCATCAAGTTTCCATTAGAGAAGTACTCCTTTCCTCGTCAAATCAATGCTTGTACCGATAGGCGAGAAATAAGGAATGATTGTCGGCTGATTCTTGCTTCCTGCACGATGCAGGACGCGATTGTCAGC","","","9485","MFPKGDCCMGVSLSSFAAEQILSVFGKGQTFGIWTQQANRNFIKFPLEKYSFPRQINACTDRREIRNDCRLILASCTMQDAIVS","","NO TIGR ID corresponds to this gene.","hypothetical protein","Periplasm, Cytoplasm","No hit found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","","","Thu Mar 8 09:56:13 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 8 09:56:13 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Mar 8 09:56:13 MST 2001","","","","","","","1","","","" "PG0213","271474","270854","621","ATGAAAAGAATGCTGCTGCTTCTCGTTGTATTATTATATGGAATTGCAGGCCGATTGGCTGCACAAGACGTTATCAGACCATGGTCATTGCAGGTCGGAGCGGGATACTCCGATACGGAGAACATCCCGGGAGGATTCACCTATGGTTTCTATTTGGGAAAGCGTATGGGGAGCTTTCTGGAAGTGGGGCTGTCCATGTACAACTCCACACGTCAAACAGCCAACAATGCAGACTCCTTTGCATCGAACGAAGGAGACGGATCTTTTCAGGTAAATATGTCTTCTCCGAATGAGAAGTGGTCATTCTTCGATGCAGGCAGTGCCAACTGCTATATGATCGTCGTCGGAGTCAATCCTCTCCATCTGTTTTGGCAGAATAGCCGGCACAATTTGTTTCTGGCAGTACAAGCCGGCCTGTCCAATAAGCACAATATTCATTTCATCTATGGAGACAAGGGAGCCAAAGTCAGTATCTACACCAATTCGAATACCTACATCGGTTACGGAGCACGTGTAGCCTACGAATATCAAATTCATAAAAACGTGGGGGCGGGTGCCGCTGTAATGTACGACCACGGCAATAAGATGCTTACGGCCATGGCCACGCTCTCCACTCATTTT","9.60","4.62","22780","MKRMLLLLVVLLYGIAGRLAAQDVIRPWSLQVGAGYSDTENIPGGFTYGFYLGKRMGSFLEVGLSMYNSTRQTANNADSFASNEGDGSFQVNMSSPNEKWSFFDAGSANCYMIVVGVNPLHLFWQNSRHNLFLAVQAGLSNKHNIHFIYGDKGAKVSIYTNSNTYIGYGARVAYEYQIHKNVGAGAAVMYDHGNKMLTAMATLSTHF","271474 270854","TIGR ID: PG0234","immunoreactive 23kD antigen PG66","Outer membrane, Extracellular","PG0523 is identical to a previously sequenced P.gingivalis, strain W50, protein in Genbank, AAD51074. No other hits in gapped BLAST were found.","
noIPR
unintegrated
unintegrated
signalp\"[1-20]?signal-peptide
tmhmm\"[5-25]?\"[102-122]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Mar 8 10:21:52 MST 2001","Wed Apr 25 16:53:36 MDT 2001","Thu Mar 8 10:21:52 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 112-207 are 45% similar to PG1425, a predicted immunoreactive 23kD antigen PG66 homolog.","Thu Mar 8 10:27:39 MST 2001","Thu Mar 8 10:21:52 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Mar 8 10:21:52 MST 2001","34540085","Thu Mar 8 10:21:52 MST 2001","Ross,B.C., Barr,I., Patterson,M., Agius,C., Rothel,L., Margetts,M., Hocking,D. and Webb,E. Porphyromonas gingivalis polypeptides and nucleic acids. Patent: Australia (AU 98/01023)-PCT 10-DEC-1998; CSL Ltd; 45 Poplar Road; R&D; Parkville, Victoria; Australia.","","Thu Mar 8 10:21:52 MST 2001","","1","","","PG0234" "PG0214","271769","273289","1521","ATGAAAGAGGCCCTACGTAAGCTGGAAACGGCTGTGTATGCTATCAGCAGCCTGTATGTGGACAGTGTGGACAACAACAAGCTGACCGAATATGCCATTCGAGGGGTCTTGAGCGAATTGGACCCTCACTCTGTTTATTCCGATGCAGAGGAGACAAAGAGCGAATTGGAGCCTCTAAATGCCGGATTCGACGGTATAGGCGTGCAGTTCAATATGCTCACGGATACGGTCTATGTGGTACAGGTGATTGCCGGAGGCCCTTCGGAAAAGGCCGGATTGTTGGCCGGTGATCGCATTGTATCAGTGGATGATACTGTCATTGCAGGAATCAAGATGAAGACCAATGACGTGATGAAACGCTTGCGTGGTCCGCGAGGAAGCAAGGTCAAACTCGGCGTATGGCGGGGGAACGACAGACTCAATATCACCGTCAAGCGAGGCCTTGTCCCTGTTCATAGCCGCGAGGCCTGCTATATGGTCGACGAACGTACAGGGTATATCAGACTGAGTAGATTTTCGCGCACTACCTACGATGAGTTTGCCGAGGGCATAGCTCTTTTGCGAGGACGTGGTATGCAGCAGTTGGTGCTTGATCTGAGATTCAATGGTGGCGGTATACTTGATCAGGCTGTGGAGATGGCCGGAACTTTTCTACCCGAAGGAAGTACGGTACTGACCGTCAGAAACAATCGTATGCCACGGATCAGTGAGCGCATGGAGGCTACGAGCAATAACCTCCTCCCGAAGGACTTGCCTTTGGTCGTTCTCGTCAATGAGTTTTCGGCTTCAGCCAGCGAGATATTGGCCGGGGCCATACAAGATTGGGACAGAGGAGTCGTTATCGGACGGCGTACTTTCGGCAAAGGACTGGTACAGCGTCCATTGCCCTTTCAGGATGGTTCGATGATCCGGCTGACTATCGCCCGCTATTATACGCCTTCGGGACGTAGCATCCAGAAACCTTATGCAAAAGGGAATTTCAAAGCATACGAACAGGAATTGATCGGTCGCTTCAAACACGGCGAATCCATCCACAGCGACAGCATCCGTTTCCCCGATTCTCTTCGCTACAAGACTCTCGTCACGGGGCGCACCGTTTATGGTGGGGGAGGCATTATGCCGGATCTTTTCATCCCAACGGATACGGCCTTGTTCAACAAGCTGCATCGCGAGCTGCTGAACAAGGGTATCTTTAATCGGGCTGTACTCAAATATGTGGATGCACATCGTCAGAAGCTGCGCCAACGCTTCCCCGACAGACAGTCATACGCCACGTTTAGCATTCCCGAAGAACTGACTGAAAGCCTGAAAGCATTTGCCGAAGCTGAGAAAATCACATGGAGCACCGAACTTTTTGCTCAAGCCGAAGAGCTTATCAAGTGTCAGCTCCATGCCTATATCGCACGTGATATTCTGGGGGAGAACGACTTCTTCTATTTCTTCAATCGCATGGATAAGGAATATATAAAAGCACTCGATCTCCTCAATGATCCCGACGAATACAAACGTCTCCTCGGAAAG","9.50","6.64","57128","MKEALRKLETAVYAISSLYVDSVDNNKLTEYAIRGVLSELDPHSVYSDAEETKSELEPLNAGFDGIGVQFNMLTDTVYVVQVIAGGPSEKAGLLAGDRIVSVDDTVIAGIKMKTNDVMKRLRGPRGSKVKLGVWRGNDRLNITVKRGLVPVHSREACYMVDERTGYIRLSRFSRTTYDEFAEGIALLRGRGMQQLVLDLRFNGGGILDQAVEMAGTFLPEGSTVLTVRNNRMPRISERMEATSNNLLPKDLPLVVLVNEFSASASEILAGAIQDWDRGVVIGRRTFGKGLVQRPLPFQDGSMIRLTIARYYTPSGRSIQKPYAKGNFKAYEQELIGRFKHGESIHSDSIRFPDSLRYKTLVTGRTVYGGGGIMPDLFIPTDTALFNKLHRELLNKGIFNRAVLKYVDAHRQKLRQRFPDRQSYATFSIPEELTESLKAFAEAEKITWSTELFAQAEELIKCQLHAYIARDILGENDFFYFFNRMDKEYIKALDLLNDPDEYKRLLGK","271691 273289","No significant hits in gapped BLAST to the C-terminal ~150 amino acids of this protein. Possible stop coordinate error?TIGR ID: PG0235","carboxyl-terminal protease","Cytoplasm, Periplasm, Extracellular","Numerous significant hits to carboxy-terminal protease proteins in gapped BLAST; e.g. residues 3-319 are 41% similar to gbAAF85501.1AE004076_6 carboxyl-terminal protease of Xylella fastidiosa, residues 19-319 are 39% similar to gbAAD04178.1 carboxy-terminal protease of Bartonella quintana, residues 2-318 are 35% similar to dbjBAB07318.1 carboxy-terminal processing protease of Bacillus halodurans.This sequence is similar to BT3035.","
InterPro
IPR001478
Domain
PDZ/DHR/GLGF
PF00595\"[53-134]TPDZ
SM00228\"[64-137]TPDZ
PS50106\"[53-137]TPDZ
SSF50156\"[60-150]TPDZ
InterPro
IPR004447
Family
Peptidase S41A, C-terminal protease
TIGR00225\"[16-350]Tprc
InterPro
IPR005151
Domain
Peptidase S41
PF03572\"[163-329]TPeptidase_S41
SM00245\"[137-321]TTSPc
noIPR
unintegrated
unintegrated
G3DSA:2.30.42.10\"[49-137]TG3DSA:2.30.42.10
G3DSA:3.90.226.10\"[140-320]TG3DSA:3.90.226.10
PTHR22939\"[77-261]TPTHR22939
PTHR22939:SF10\"[77-261]TPTHR22939:SF10
SSF52096\"[1-387]TSSF52096


","BeTs to 10 clades of COG0793COG name: Periplasmic proteaseFunctional Class: MThe phylogenetic pattern of COG0793 is -----qvCeB-huj--olinxNumber of proteins in this genome belonging to this COG is 4","No significant hit to the Blocks database.","Residues 163-318 are 40% similar to a (PROTEASE CARBOXYL-TERMINAL PRECURSOR) protein domain (PD004132) which is seen in O30968_NOSPU.","","Wed Jun 13 14:51:23 MDT 2001","","Wed Jun 13 14:51:23 MDT 2001","Wed Jun 13 14:51:23 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Jun 13 14:51:23 MDT 2001","Wed Jun 13 14:51:23 MDT 2001","","Fri Dec 19 10:41:35 2003","Thu Mar 8 10:40:26 MST 2001","Fri Jul 25 15:14:06 2008","Thu Mar 8 10:40:26 MST 2001","","Fri Dec 19 10:41:35 2003","yes","Fri Feb 20 15:41:32 MST 1998","Residues 8-497 are 40% similar to PG1617, a predicted carboxyl-terminal proteinase. Similarites are also seen to PG0942, a probable tail-specific protease.","Wed Jun 13 15:02:18 MDT 2001","Fri Jul 25 15:14:06 2008","-47% similar to PDB:1FC6 PHOTOSYSTEM II D1 C-TERMINAL PROCESSING PROTEASE (E_value = 8.0E_29);-47% similar to PDB:1FC7 PHOTOSYSTEM II D1 C-TERMINAL PROCESSING PROTEASE (E_value = 8.0E_29);-47% similar to PDB:1FC9 PHOTOSYSTEM II D1 C-TERMINAL PROCESSING PROTEASE (E_value = 8.0E_29);-47% similar to PDB:1FCF PHOTOSYSTEM II D1 C-TERMINAL PROCESSING PROTEASE (E_value = 8.0E_29);","","","Residues 53 to 134 (E-value = 7.8e-06) place PG0214 in the PDZ family which is described as PDZ domain (Also known as DHR or GLGF) (PF00595)Residues 161 to 324 (E-value = 2.9e-67) place PG0214 in the Peptidase_S41 family which is described as Peptidase family S41B (PF03572)","Fri Dec 19 10:41:35 2003","34540086","","","","","","1","","","PG0235" "PG0215","273364","274881","1518","ATGAAAGAGATAAGTAGATTGACAGCTGTCATATTACTCGCTGTGGGCTTCGTACTTGCCAATGGCAGCTGTTCGGATGACTTCGACAAATATGCCGAGTCTCCGGAAGATCGTGCCGAATTTTCTGCCGATACCATCAAGTTCGATACCCTTTTCAGCCGAGTCAGTTCTTCCACTCGGACATTCATGGTATACAACCGGCTCAATCGTTCGCTACGTCTGAGCGAAGTGGAGCTGGTGGGAGGCAAAAACCGTGGCTACCGTGTGAATGTGGACGGACATGTAGGCACCAAGTTTTCCGATCTGACCATTCTTCCGAAGGATAGTATGTTCATCTTCGTCGAAGCTACTTTTCCTGAAGGGGAGAGCGATGATCCGGTCGAGGTTAAAGACTCTCTCCGTTTCCTTATCAATGGACGTACGGACTATGTCCTGTTGCAGGGTTTTCGTCAGAATGTAGACGAAGTGACCGCTTTGGTTATCGATCGGGATACGATATTTGGAGCACAACGTCCCACCTTGCTTCTCGACAGCCTTGTCGTTCAGCAGGGTGCTACCCTTACTTTACCTGCCGGATGCCGTCTGCTGATGGCCAATAAGGCCCACATCAAGGTTCGGGGTCGCCTAATGGCGGAGGGCAATCCGGCCAAGCGAGTGATGATAGAGAATCTGCGCCACGATCTCCTCGTACAGGATGTACCTTATACCCTCGTTCCCGGACAGTGGGGCGGTATTCTTTTCTCTGAAGAGAGTCGTGGCAATGAACTTCGTTATACTACTATCCGCAACGGTCGATGGGGAATCATTGCCGAAGGCGGTAAGGATGTCACCACCCCAAAATTGCTTTTGGAGGGCTGTATGGTCACCAATACGAAAGGCTCCGGTCTGGCTGCTTCCGGTGGCTATATCCGTATTCTCAACAGTGAGATCAGCAATACCCTCGGCTATACTGTAGCCCTCTTCGGCAGCGTATGCGAATTGACCCAAAGCACTGTTTGCAATTTCTATAGATGGGACAACCGCCAAGGGGAAGCCTTGCGCTACGTGACGGCATTCGCTCCCGATGTGGCAGGCGGATCCTATACTCCCTCATCGGACAGTCGTTTGATTTTGTCCAACAGTATTGTCGATGGCAGTCGGTCTGTGGTCAAACAGGGAGATAAAGAGAGTGGAGGAGAAATCAGTCTGTCCGACGGTTCACCGTCCGATAATGAAGCCTCGGTACTTGCACGCCTTACGATACGCAACAGCTATGTACGTGCCCGTTCGAGCATCCTCAATGTCGGATATAATGTGATGGAGGCCGACAAGAACAACCCGGCCGACAGTATCTATTATAGTGTAGGGTACGACTTGATCAAAAAGAAGTACAACTTCCGCTACGACTATCATCCTCTGCCCAATGCCCCATTCGTAGGGAAAGCCGATCCTGCTATCATAGCGTTGTTCCCCCATGACTTGACCGGAGAACCCCGCCGGACAGCTACCGTGGGGGCTTTCGAAGTAAAGCCCCGTCCT","6.70","-0.99","55659","MKEISRLTAVILLAVGFVLANGSCSDDFDKYAESPEDRAEFSADTIKFDTLFSRVSSSTRTFMVYNRLNRSLRLSEVELVGGKNRGYRVNVDGHVGTKFSDLTILPKDSMFIFVEATFPEGESDDPVEVKDSLRFLINGRTDYVLLQGFRQNVDEVTALVIDRDTIFGAQRPTLLLDSLVVQQGATLTLPAGCRLLMANKAHIKVRGRLMAEGNPAKRVMIENLRHDLLVQDVPYTLVPGQWGGILFSEESRGNELRYTTIRNGRWGIIAEGGKDVTTPKLLLEGCMVTNTKGSGLAASGGYIRILNSEISNTLGYTVALFGSVCELTQSTVCNFYRWDNRQGEALRYVTAFAPDVAGGSYTPSSDSRLILSNSIVDGSRSVVKQGDKESGGEISLSDGSPSDNEASVLARLTIRNSYVRARSSILNVGYNVMEADKNNPADSIYYSVGYDLIKKKYNFRYDYHPLPNAPFVGKADPAIIALFPHDLTGEPRRTATVGAFEVKPRP","273364 274881","TIGR ID: PG0236","conserved hypothetical protein","Outer membrane, Cytoplasm","No hit found in gapped BLAST.","
InterPro
IPR006626
Repeat
Parallel beta-helix repeat
SM00710\"[251-272]T\"[278-299]T\"[300-322]TPbH1
InterPro
IPR011050
Domain
Pectin lyase fold/virulence factor
SSF51126\"[176-447]TPectin_lyas_like


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Sep 10 17:56:20 2004","","Thu Mar 8 10:42:26 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 8 10:42:26 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Mar 8 10:42:26 MST 2001","34540087","","","","","","1","","","PG0236" "PG0216","274918","275583","666","ATGAAAGAGGTACGAATCGAAGCCGGATGGAAAAAGGTTTTACAGGAAGAATTCGATAAATTTTATTTCGAAAAGCTGACCGACTTTGTGCGTGAAGAGTATCGGCAGAGTCCGATTTACCCCCCGGCCCGATTTATTTTTCGGGCATTTGACACTTGCCCTTTCGACCGCGTCAAAGTCGTTATTCTTGGACAAGATCCCTATCATGAACCCGGGCAAGCCGAAGGGTTGGCTTTCTCAGTGCCGACCGGTATACCCATTCCTCCCAGTTTACGCAATATCTGCGAAGAGATTCGTACCGATACCGGACAGCCGGCTCATATAGATGGAGGAAGTCTTTTGCCGTGGGTAGAGCAAGGAGTATTACTGCTCAATGCCACGCTTACTGTTCGTGCAAGTCAGGCCGGTAGCCACCAAGGGCATGGATGGGAGACCTTTACGGATGCGGCCATAGAAGCCTTGGCCAAGCGTAGAGAACACCTTGTCTTTCTCCTCTGGGGAAGTTATGCCCGCCGAAAATCAGCCATGATCGATCCTCGCTGTCATCTCATTCTCGAAGCACCTCATCCTTCGCCACTCTCAGCACATCGCGGTTTTTTTGGCTGCAAGCATTTCAGCCGAACCAACGCATATCTCCGCCAGCACGGCATAGCCCCGATCGTTTGG","7.90","3.22","25233","MKEVRIEAGWKKVLQEEFDKFYFEKLTDFVREEYRQSPIYPPARFIFRAFDTCPFDRVKVVILGQDPYHEPGQAEGLAFSVPTGIPIPPSLRNICEEIRTDTGQPAHIDGGSLLPWVEQGVLLLNATLTVRASQAGSHQGHGWETFTDAAIEALAKRREHLVFLLWGSYARRKSAMIDPRCHLILEAPHPSPLSAHRGFFGCKHFSRTNAYLRQHGIAPIVW","274918 275583","TIGR ID: PG0237","uracil-DNA glycosylase","Cytoplasm","Numerous significant hits to uracil-DNA glycosylase proteins in gapped BLAST; e.g. residues 4-222 are 55% similar to gb|AAG04139.1|AE004510_3 uracil-DNA glycosylase of Pseudomonas aeruginosa, residues 10-222 are 58% similar to gb|AAF41604.1| uracil-DNA glycosylase of Neisseria meningitidis MC58, residues 10-222 are 55% similar to emb|CAB85708.1| uracil-DNA glycosylase of Gadus morhua.","
InterPro
IPR002043
Family
Uracil-DNA glycosylase
PTHR11264\"[23-222]TUDNA_glycsylse
TIGR00628\"[7-217]Tung
PS00130\"[59-68]TU_DNA_GLYCOSYLASE
InterPro
IPR003249
Family
Uracil-DNA glycosylase, not poxvirus
PD001589\"[6-222]TU_glycsylse_notp
InterPro
IPR005122
Family
Uracil-DNA glycosylase superfamily
PF03167\"[51-213]TUDG
noIPR
unintegrated
unintegrated
G3DSA:3.40.470.10\"[4-222]TG3DSA:3.40.470.10
SSF52141\"[8-222]TUDNA_glycsylseSF


","BeTs to 8 clades of COG0692COG name: Uracil DNA glycosylaseFunctional Class: LThe phylogenetic pattern of COG0692 is ----y---ebrhujgpo-in-Number of proteins in this genome belonging to this COG is 1","***** IPB002043 (Uracil-DNA glycosylase) with a combined E-value of 2.5e-53. IPB002043A 59-69 IPB002043B 116-143 IPB002043C 160-170 IPB002043D 182-193 IPB002043E 199-222","Residues 39-222 are 59% similar to a (GLYCOSYLASE URACIL-DNA DNA UDG) protein domain (PD001589) which is seen in UNG_HAEIN.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Mar 8 10:58:48 MST 2001","Thu Mar 8 10:58:48 MST 2001","Thu Mar 8 10:58:48 MST 2001","Thu Mar 8 10:58:48 MST 2001","Thu Mar 8 10:58:48 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 8 10:58:48 MST 2001","-67% similar to PDB:1OKB CRYSTAL STRUCTURE OF URACIL-DNA GLYCOSYLASE FROM ATLANTIC COD (GADUS MORHUA) (E_value = 2.2E_63);-64% similar to PDB:1AKZ HUMAN URACIL-DNA GLYCOSYLASE (E_value = 1.6E_61);-64% similar to PDB:1EMH CRYSTAL STRUCTURE OF HUMAN URACIL-DNA GLYCOSYLASE BOUND TO UNCLEAVED SUBSTRATE-CONTAINING DNA (E_value = 1.6E_61);-64% similar to PDB:1EMJ URACIL-DNA GLYCOSYLASE BOUND TO DNA CONTAINING A 4'-THIO-2'DEOXYURIDINE ANALOG PRODUCT (E_value = 1.6E_61);-64% similar to PDB:1Q3F Uracil DNA glycosylase bound to a cationic 1-aza-2'-deoxyribose-contianing DNA (E_value = 1.6E_61);","","","Residues 53 to 213 (E-value = 1.7e-71) place PG0216 in the UDG family which is described as Uracil DNA glycosylase superfamily (PF03167)","Thu Mar 8 10:58:48 MST 2001","34540088","","","Haug,T., Skorpen,F., Kvaloy,K., Eftedal,I., Lund,H. and Krokan,H.E. 1996. Human uracil-DNA glycosylase gene: sequence organization, methylation pattern, and mapping to chromosome 12q23-q24.1. Genomics 36 (3): 408-416. PubMed: 8884263.Nilsen,H., Otterlei,M., Haug,T., Solum,K., Nagelhus,T.A.,Skorpen,F. and Krokan,H.E. 1997. Nuclear and mitochondrial uracil-DNA glycosylases are generated by alternative splicing and transcription from different positions in the UNG gene. Nucleic Acids Res. 25 (4): 750-755. PubMed: 9016624.","","Thu Mar 8 10:58:48 MST 2001","1","","","PG0237" "PG0217","276136","275759","378","TTGTTTTATAGCCATTCGGAACATACGCCGAAAGGGGGTCGAGCTACGCCCTACAGCGACTCGGGCTACGCCGTAGAGCGTACCGAGCTGCGCTCTACGGCTCAGCTCGGCCACCTCTACGGCTCCCGGAGCGGAACTCTACGGCTCGGCTCGCTACGCTGTAGAGCGTACCTCGCCGAGCTCTACAGCGTAGCTCGAAGAGCTGTACGGGATAGCCCGTTATCCTCTACGGTGTACCGCCATCTGCCTTGTGGTATAGCCCATCTTCCTGTACGGACTGCAACATTCGGTCAAAAAAGCAATCCGAATTTCAATGTTGGTTCGATCCGGGCAGAAGCAGGATTGCCCCCTATACAATTGCCTGAACGGAATAACCTA","10.90","9.09","13823","LFYSHSEHTPKGGRATPYSDSGYAVERTELRSTAQLGHLYGSRSGTLRLGSLRCRAYLAELYSVARRAVRDSPLSSTVYRHLPCGIAHLPVRTATFGQKSNPNFNVGSIRAEAGLPPIQLPERNNL","276190 275759","TIGR ID: PG0238","hypothetical protein","Cytoplasm, Extracellular","No hit found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Wed Jun 13 14:53:25 MDT 2001","","Wed Jun 13 14:53:25 MDT 2001","Wed Jun 13 14:53:25 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Jun 13 14:53:25 MDT 2001","Wed Jun 13 14:53:25 MDT 2001","","","","","Thu Mar 8 11:01:19 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 8 11:01:19 MST 2001","-49% similar to PDB:1WCG APHID MYROSINASE (E_value = );-59% similar to PDB:2C4M STARCH PHOSPHORYLASE: STRUCTURAL STUDIES EXPLAIN OXYANION-DEPENDENT KINETIC STABILITY AND REGULATORY CONTROL. (E_value = );","","","No significant hits to the Pfam 11.0 database","Thu Mar 8 11:01:19 MST 2001","","","","","","","1","","","PG0238" "PG0218","277183","276488","696","ATGATAAAACATCTTTTTATCGATCTTGACGATACGCTTTGGGACACTTATCATAATAATAAGAGTAGCCTCGAAGAGTTGTATCATACACATGCCTGGGATAGATATTTCGACTCGTTCGAAACTTTCTTCAGTATATATTTGCCTCACAATGAAGCCCTTTGGTCTGAGTATCGGTATGGGCAAATCGATAAGCCGACCCTTACTTTGGAGCGTTTCAGAAGACCTTTCACCGGATATCTCACTTTGTCTGATGAACAAATACTAGCATGGAATGCAGAGTTTCTGTCCATTACCGGGCGGAAAACTCGACTTTGCCCTCATGCTCTGGAAGTGATGGAGTATCTGCACCGTTACTACAAGGTTTATATCCTTAGCAACGGCTTTCGAGAAATCCAGCATGCCAAACTGACCAATAGTGGTTTGGCACCCTATATTGACCGAGTGATTCTATCCGAAGATGCGGGTATCAACAAGCCAAACAAAAAGATATTCGACTTCGCACTCGTCAAAGCCAAAGCCAGAAAGACGGAAAGCATCATGATAGGAGATAGCTGGGAAGCCGATATAGTCGGGGCGGCCAATGCCGGTCTGGCATCTGTCTGGTATAACCCGAACAGACATATCTTACCTGATGACGGTGTACGAGCACCCATGCATATTATTTCCTCTTTGTCCGAGCTGATGCAGATATTC","6.50","-2.64","27070","MIKHLFIDLDDTLWDTYHNNKSSLEELYHTHAWDRYFDSFETFFSIYLPHNEALWSEYRYGQIDKPTLTLERFRRPFTGYLTLSDEQILAWNAEFLSITGRKTRLCPHALEVMEYLHRYYKVYILSNGFREIQHAKLTNSGLAPYIDRVILSEDAGINKPNKKIFDFALVKAKARKTESIMIGDSWEADIVGAANAGLASVWYNPNRHILPDDGVRAPMHIISSLSELMQIF","277306 276488","TIGR ID: PG0240","conserved hypothetical protein (possible phosphatase or hydrolase)","Cytoplasm","Several significant hits and numerous weak hits in gapped BLAST; e.g. residues 5-231 are 30% similar to gb|AAG59554.1|AE005668_9 putative phosphatase of Escherichia coli O157:H7, residues 41-231 are 33% similar to gb|AAF96509.1| conserved hypothetical protein of Vibrio cholerae, residues 5-231 are 27% similar to pir||E69814 conserved hypothetical protein of Bacillus subtilis. ","
InterPro
IPR005833
Family
Haloacid dehydrogenase/epoxide hydrolase
PR00413\"[2-13]T\"[115-128]T\"[146-162]T\"[192-205]THADHALOGNASE
InterPro
IPR005834
Domain
Haloacid dehalogenase-like hydrolase
PF00702\"[2-206]THydrolase
InterPro
IPR006439
Family
HAD-superfamily hydrolase, subfamily IA, variant 1
TIGR01549\"[58-197]THAD-SF-IA-v1
InterPro
IPR011951
Family
HAD-superfamily hydrolase, subfamily IA, YjjG/YfnB
TIGR02254\"[2-232]TYjjG/YfnB
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.1000\"[105-232]TG3DSA:3.40.50.1000
PTHR12725\"[1-231]TPTHR12725
PTHR12725:SF4\"[1-231]TPTHR12725:SF4
SSF56784\"[1-230]TSSF56784


","BeTs to 7 clades of COG1011COG name: Predicted hydrolases of the HAD superfamilyFunctional Class: RThe phylogenetic pattern of COG1011 is -mtKY-V-EB---j--o----Number of proteins in this genome belonging to this COG is 3","No significant hit to the Blocks database.","Residues 120-201 are 35% similar to a (HYDROLASE DEHALOGENASE ACID 2-HALOALKANOIC L-2-HALOACID) protein domain (PD003038) which is seen in P95933_SULSO.Residues 154-228 are 46% similar to a (PROTEIN PHOSPHATASE LONG PHOSPHOGLYCOLATE) protein domain (PD000816) which is seen in YJJG_ECOLI.","","Wed Jun 13 15:03:29 MDT 2001","","Wed Jun 13 15:03:29 MDT 2001","Wed Jun 13 15:03:29 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Jun 13 15:03:29 MDT 2001","Wed Jun 13 15:03:29 MDT 2001","","","Fri Apr 6 13:45:12 MDT 2001","Wed Jun 13 16:17:30 MDT 2001","Thu Mar 8 11:13:14 MST 2001","","Thu Mar 8 11:13:14 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 8 11:13:14 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 2 to 206 (E-value = 2.4e-21) place PG0218 in the Hydrolase family which is described as haloacid dehalogenase-like hydrolase (PF00702)","Thu Mar 8 11:13:14 MST 2001","34540089","","","","","","1","","","PG0240" "PG0219","278304","277453","852","ATGAAGAAGAAACTGTTTATCGCCACAGCGCTAACTCTTGCCTTGGTATCATGTGGAAAAAACTCCAGTGCCTATAAAGAGCTGAAAATGCAGTATGACTCTATTGCAGCAGTAAACAGCCAACACGAATCCGAATTGGCAGAGATGGACTCCATTATCAGTGGAGTTCTGACCAACTTCCAAGAAATCTCTGCCATGGAAGGCATGATCAATCTCAATCCTCTGAGCGGAGATATTCGTGCCAGCCAGCGCGATCGTATCAATGACAATATGAGACTGATCAACGAAAAGCTCCAAGCCAACCGCAAGAGCATCGACGATCTGACCGAAAAGCTCCAAAAGAGCGGACGTGAGAACAGCCGCCTGATGAAGACTTTGACACAGTTGCGCCAGCAACTCGAAGCAAAAACTCAGGAAGTAAACCAGCTGCGTGAAGAATTGGAGCGCAAGAATATCGCCATCGGCATGCTTGACTCCACAGTTATCTCACAGGGAGCGCAACTTGAGAGCAGTGCAAGAGAAAATGCGACTTTGGCAGAACAGAATGCTCGTCAGGATCGCGAACTCAATACTGTGCGCTATTGTATAGGAACAAGCAGCGACCTCAAAGAAATGAATATCGTTCGTCGTGGTCAGGTATTGACCGAAGGGCATAACGATACATACTTCACGAAGGCCGATATGCGCAACCTGAAAGTGATCCCGCTCATGGCCAAGAAAGCTAATGTGCTGACCAGCCATCCTGCATCATCATACGAATTGATTCGCGGCACAGACAAGATGCTCACCCTTCGTATCAAGGATCCCCAGGCTTTCTGGAAAAACTCCAAAATGCTCGTTATCCAAACCAAT","9.90","6.64","32083","MKKKLFIATALTLALVSCGKNSSAYKELKMQYDSIAAVNSQHESELAEMDSIISGVLTNFQEISAMEGMINLNPLSGDIRASQRDRINDNMRLINEKLQANRKSIDDLTEKLQKSGRENSRLMKTLTQLRQQLEAKTQEVNQLREELERKNIAIGMLDSTVISQGAQLESSARENATLAEQNARQDRELNTVRYCIGTSSDLKEMNIVRRGQVLTEGHNDTYFTKADMRNLKVIPLMAKKANVLTSHPASSYELIRGTDKMLTLRIKDPQAFWKNSKMLVIQTN","278337 277453","TIGR ID: PG0241","conserved hypothetical protein; possible lipoprotein","Periplasm, Outer membrane, Extracellular","Its nearest neighbor in the NR database is gi:53711952 from Bacteroides fragilis YCH46.","
noIPR
unintegrated
unintegrated
PS51257\"[1-18]TPROKAR_LIPOPROTEIN


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Wed Jun 13 15:03:48 MDT 2001","","Wed Jun 13 15:03:48 MDT 2001","Wed Jun 13 15:03:48 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Jun 13 15:03:48 MDT 2001","Wed Jun 13 15:03:48 MDT 2001","","","Tue Mar 1 14:28:33 2005","Tue Mar 1 14:25:52 2005","Thu Mar 8 11:23:28 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 1 14:25:52 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Mar 8 11:23:28 MST 2001","34540090","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Tue Mar 1 14:27:02 2005","","1","","","PG0241" "PG0220","279050","278352","699","ATGGAAGGACGTTTGACAGTCGTGCCGACTCCTATCGGCAATTTGGAGGATATTACCTTGAGAGCCTTGAAGGTACTGCGCGAAGCAGACCTGATTTTGGCAGAGGACACGCGTACCAGCAGTGTATTGCTCCACCATTACGACATTCACTGTCCGCTCCAGAGCCATCATAAATTCAACGAACATCGTACGGCCAAGTCATTGGCCGAACGGATATCCGGAGGTGAACGCATAGCTTTGATCTCCGACGCCGGAACTCCCGGGATCAGCGACCCCGGTTTTTTGCTTGTCAGAGCATGTGCCGAGTTGGGTGTAGTGGTAGAATGTCTGCCCGGACCCACAGCATTGATTCCGGCTTTGGTAGCAAGCGGACTCCCTGCCGACAGGTTTGTTTTCGAAGGTTTTCTGCCTGTCAAGAAAGGCCGCCAAACTCGAATGAAAGAATTGGCCGAAGAGCTCCGGACGATGATATTTTATGAGTCGCCCCATCGGGTGCTCAGGACTCTGACCCAATTTGTGGAGACTTTCGGTCTCGATCGACCAGCTGCTGCATGCCGGGAGCTGAGCAAACTCCACGAAGAGGTGATCCGCGGAACACTCGCGGAATTACTGGCTCACTTCGAAAACCACCCTCCAAGGGGAGAATTCGTTCTCATCGTGGGTGGAGCCGCCCCGAAAGGGAGAAAAGAAGAGAAGCAA","7.00","0.00","25688","MEGRLTVVPTPIGNLEDITLRALKVLREADLILAEDTRTSSVLLHHYDIHCPLQSHHKFNEHRTAKSLAERISGGERIALISDAGTPGISDPGFLLVRACAELGVVVECLPGPTALIPALVASGLPADRFVFEGFLPVKKGRQTRMKELAEELRTMIFYESPHRVLRTLTQFVETFGLDRPAAACRELSKLHEEVIRGTLAELLAHFENHPPRGEFVLIVGGAAPKGRKEEKQ","279050 278352","TIGR ID: PG0242","conserved hypothetical protein","Cytoplasm","Numerous significant hits to hypothetical and conserved hypothetical proteins in gapped BLAST; e.g. residues 3-228 are 50% similar to dbj|BAA18113.1| hypothetical protein of Synechocystis sp., residues 3-222 are 48% similar to gb|AAD35791.1|AE001742_6 conserved hypothetical protein of Thermotoga maritima, residues 3-229 are 51% similar to gb|AAG07810.1|AE004857_1 conserved hypothetical protein of Pseudomonas aeruginosa.","
InterPro
IPR000878
Domain
Tetrapyrrole methylase
PF00590\"[4-204]TTP_methylase
SSF53790\"[1-226]TCor/por_Metransf
InterPro
IPR008189
Family
Protein of unknown function UPF0011
PIRSF005917\"[2-233]TMtase_YraL
TIGR00096\"[4-231]TUPF0011
PS01296\"[82-93]TUPF0011
InterPro
IPR014776
Domain
Tetrapyrrole methylase, subdomain 2
G3DSA:3.30.950.10\"[114-226]T4pyrrole_Mease_sub2
InterPro
IPR014777
Domain
Tetrapyrrole methylase, subdomain 1
G3DSA:3.40.1010.10\"[3-113]T4pyrrole_Mease_sub1
noIPR
unintegrated
unintegrated
PTHR21091\"[45-233]TPTHR21091
PTHR21091:SF18\"[45-233]TPTHR21091:SF18


","BeTs to 12 clades of COG0313COG name: Predicted methyltransferasesFunctional Class: RThe phylogenetic pattern of COG0313 is -----qvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 2","***** IPB000578 (Uncharacterized protein family UPF0011) with a combined E-value of 3.8e-58. IPB000578A 5-49 IPB000578B 80-97 IPB000578C 119-168 IPB000578D 184-194***** IPB000878 (Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase) with a combined E-value of 5e-30. IPB000878A 5-34 IPB000878B 85-128 IPB000878C 179-200","Residues 3-219 are 50% similar to a (PROTEIN INTERGENIC REGION MG056) protein domain (PD007098) which is seen in Y818_SYNY3.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Mar 8 11:33:50 MST 2001","Thu Mar 8 11:33:50 MST 2001","Thu Mar 8 11:33:50 MST 2001","Thu Mar 8 11:33:50 MST 2001","Thu Mar 8 11:33:50 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 5-164 are 28% similar to PG0396, a conserved hypothetical protein (possible methyltransferase); SAM-dependent.","Thu Mar 8 11:33:50 MST 2001","Thu Mar 8 11:33:50 MST 2001","-53% similar to PDB:1WYZ X-Ray structure of the putative methyltransferase from Bacteroides thetaiotaomicron VPI-5482 at the resolution 2.5 A. Norteast Structural Genomics Consortium target Btr28 (E_value = 2.2E_13);","","","Residues 4 to 204 (E-value = 9.9e-39) place PG0220 in the TP_methylase family which is described as Tetrapyrrole (Corrin/Porphyrin) Methylases (PF00590)","Thu Mar 8 11:33:50 MST 2001","34540091","","","","","","1","","","PG0242" "PG0221","279542","279069","474","ATGAATCCGGCAAATGATGCTGATATTTTTGATGTGCTAACGCACTTGGAACGTCTCTTCGGCGATAGAGAGAAACTCTCGGAATTGACTCCAAATGAGGCGATTGAGATTTTTGACAGGCTGAGTCGTATCAACGGTATGCTTATTCGTGAAGCGTCAAGACAAAAGGAGCAAACGAAGCAGCCCGTTGTGCTAACGGAAATAACACCTCAAGAGGGGAAACAAGAGGAGAGACCCTCTCCTGCAGGCTTCGATTTGCAGAAGATAGTCTCTACGTTGGATTTTTTTCGCTTTAGACGGGAGTTGTTTCAAGACGATGACAAGCTTATGCGAGACATCTCTGCCCATCTCGGATTGCTGTCGTCAGCGGCTGAAGCTATGATCTATTTGCATCAGCGGATGCAATGGGAGGCAGAGGATCCGGTGGTAAATGACTTTGCGGAAGTAGTGTCGGATTTCTTCCGTAGAAGGAAC","4.70","-8.27","18424","MNPANDADIFDVLTHLERLFGDREKLSELTPNEAIEIFDRLSRINGMLIREASRQKEQTKQPVVLTEITPQEGKQEERPSPAGFDLQKIVSTLDFFRFRRELFQDDDKLMRDISAHLGLLSSAAEAMIYLHQRMQWEAEDPVVNDFAEVVSDFFRRRN","279542 279069","TIGR ID: PG0243","hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Mar 1 14:54:27 MST 2001","","Thu Mar 1 14:54:27 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 14:54:27 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Mar 8 11:34:57 MST 2001","34540092","","","","","","1","","","PG0243" "PG0222","280975","279866","1110","ATGAAAGAAGAAAAATTAGTGACCCTGGCTATTCATTCCTATGAGAAAGCCCAGATACTGAAGTCTCTCCTCGAAACTGAGGGTATAGAAGCGTATCTTCATAATGTGAATCAGATACAACCCGTTATCTCTGCCGGCGTTCGGGTGAGGATCAAAGAGACCGATCTACCTCGTGCTCTCAGTATTATAGAGGATAACAAATGGGATCAGGAGGATCCCAAGAAACGAGCGAAAAATACGGAGGAATATGTGCTCATCCCTGTGGACTTCAGCGAATATACGATGAAGATATGCGAACTGGGCTTCAACTTTGCAGCCCGTCGCGGACTTCGGGTCGTATTGATGCACGTCTATATCAGTCCATTTTTCTCCACACCTCTTACGGTGGGCGATACGGCTGTGTTCCAGCTCAGCAATGAAGTCAGCCTGCGCAAAGAATACCAGCGTGTACAACGTCTGATGAACAAGCTCAAGAAAGAGCTGCGTGAAAGGATAACGCGAGAGGAACTTCCCGAAATATCTTTCTCCTCTGTCCTTTTGGACGGTGCTCCGGAAGATGTAATCCTTAGTTACTGCAAGCGACACAGACCCGTAATGATCGTGATGGGGACGCGAGGCAAATCGCGCAAGGATTCGGATCTGATCGGAAGCGTTGCAGCCGAAGTAATAGATTCGAGCAAGGTACCTGTGTTGGTTATTCCGGAAGAAGTGCCGTTCAGCGATTTGAATCAGGCCAAGCATGTAGCAGTGGCTACGAGCTTCGACCAACGCGATCTGGTGCTCTTCGATGCCATGATGAAGCTGCTGGACAAGAACAACCCTTCGTACAGCATCTTCAATATCTCAGTGGGCACACCGGAATGGAACCAAGTGCAACTCAAAGCCATCAGGGAGTATCATGCGCATCACTATCCCGATGCCACGATCAAAGTGAGCATGCTGGACGAAGGAGACTTCTCACTCGCTTTGGAAAAATTCATTCGTCAGGAAAAGGTGGATATGATTGTGGTCAATACTTATCGAAGGAATTTCTTCGCTCGCTTCTTTAATCCGAGTATGGCACGACGAATGCTCTTCCATGCCGGAACACCGCTTTTGGTAATGCACAAT","8.20","3.34","42535","MKEEKLVTLAIHSYEKAQILKSLLETEGIEAYLHNVNQIQPVISAGVRVRIKETDLPRALSIIEDNKWDQEDPKKRAKNTEEYVLIPVDFSEYTMKICELGFNFAARRGLRVVLMHVYISPFFSTPLTVGDTAVFQLSNEVSLRKEYQRVQRLMNKLKKELRERITREELPEISFSSVLLDGAPEDVILSYCKRHRPVMIVMGTRGKSRKDSDLIGSVAAEVIDSSKVPVLVIPEEVPFSDLNQAKHVAVATSFDQRDLVLFDAMMKLLDKNNPSYSIFNISVGTPEWNQVQLKAIREYHAHHYPDATIKVSMLDEGDFSLALEKFIRQEKVDMIVVNTYRRNFFARFFNPSMARRMLFHAGTPLLVMHN","280975 279866","TIGR ID: PG0245From InterPro: IPR006016UspAThe universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general \"stress endurance\" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschi MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.","universal stress protein, UspA","Cytoplasm","This sequence corresponds to gi:34396404 in Genbank.Its nearest neighbor in the NR database is gi:53713704 from Bacteroides fragilis YCH46.","
InterPro
IPR006015
Family
Universal stress protein (Usp)
PR01438\"[81-99]T\"[194-206]T\"[212-234]TUNVRSLSTRESS
InterPro
IPR006016
Domain
UspA
PF00582\"[84-234]T\"[314-369]TUsp
InterPro
IPR014729
Domain
Rossmann-like alpha/beta/alpha sandwich fold
G3DSA:3.40.50.620\"[84-233]T\"[244-369]TRossmann-like_a/b/a_fold
noIPR
unintegrated
unintegrated
SSF52402\"[84-234]T\"[246-369]TSSF52402


","BeTs to 9 clades of COG0589COG name: Universal stress protein UspA and related nucleotide-binding proteinsFunctional Class: TThe phylogenetic pattern of COG0589 is AMTK-Q-CEBRH--------xNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Tue Apr 5 10:26:54 2005","Tue Apr 5 10:26:54 2005","Tue Apr 5 10:26:54 2005","Thu Mar 8 11:42:59 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Apr 5 10:26:54 2005","No significant hits to the PDB database (E-value < E-10).","","","Residues 81 to 234 (E-value = 1.4e-12) place PG0222 in the Usp family which is described as Universal stress protein family (PF00582)","Thu Mar 8 11:42:59 MST 2001","34540093","","","Imlay JA.Pathways of oxidative damage.Annu Rev Microbiol. 2003;57:395-418.PMID: 14527285O'Toole R, Williams HD.Universal stress proteins and Mycobacterium tuberculosis.Res Microbiol. 154(6):387-92.PMID: 12892844Kvint K, Nachin L, Diez A, Nyström T.The bacterial universal stress protein: function and regulation.Curr Opin Microbiol. 2003 Apr;6(2):140-5.PMID: 12732303Gustavsson N, Diez A, Nyström T.The universal stress protein paralogues of Escherichia coli are co-ordinately regulated and co-operate in the defence against DNA damage.Mol Microbiol. 2002 Jan;43(1):107-17.PMID: 11849540Sousa MC, McKay DB.Structure of the universal stress protein of Haemophilus influenzae.Structure (Camb). 2001 Dec;9(12):1135-41.PMID: 11738040Freestone P, Nyström T, Trinei M, Norris V.The universal stress protein, UspA, of Escherichia coli is phosphorylated in response to stasis.J Mol Biol. 1997 Dec;274(3):318-24.PMID: 9405142Farewell A, Diez AA, DiRusso CC, Nyström T.Role of the Escherichia coli FadR regulator in stasis survival and growth phase-dependent expression of the uspA, fad, and fab genes.J Bacteriol. 1996 Nov;178(22):6443-50.PMID: 8932299","","Tue Apr 5 10:26:54 2005","1","","","PG0245" "PG0223","281331","281143","189","ATGCAACGCATTGCCGATGAGTTGGGGCTGCGAGTGGAAACCGTACGCAACTATTTCGGCGGTGCCAATTTCAGAGAAGGTCGTAGCTGCGGTGTTCATATCGAAGCAGGACCGGAAGGAGGTATTGTTGAGTTGGATGACACAACTATCTTAGAGAGGGCTTTGTCTATGCTGGGCGAAGCCAATGCA","4.40","-4.82","6789","MQRIADELGLRVETVRNYFGGANFREGRSCGVHIEAGPEGGIVELDDTTILERALSMLGEANA","281394 281143 [Shorter 290 113 99]","TIGR ID: PG0246","stationary-phase-upregulated protein, UstA","Cytoplasm","Its nearest neighbor in the NR database is gi:29346312 from Bacteroides thetaiotaomicron VPI-5482.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Wed Jun 13 15:04:47 MDT 2001","","Wed Jun 13 15:04:47 MDT 2001","Wed Jun 13 15:04:47 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Jun 13 15:04:47 MDT 2001","Wed Jun 13 15:04:47 MDT 2001","","","Tue Apr 5 09:03:30 2005","Tue Mar 1 14:31:01 2005","Thu Mar 1 14:53:23 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 14:53:23 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Mar 8 11:44:17 MST 2001","34540094","","Kikuchi Y, Ohara N, Sato K, Yoshimura M, Yukitake H, Sakai E, Shoji M, Naito M, Nakayama K.Novel stationary-phase-upregulated protein of Porphyromonas gingivalis influences production of superoxide dismutase, thiol peroxidase and thioredoxin.Microbiology. 2005 Mar;151(Pt 3):841-53.PMID: 15758230Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Tue Apr 5 09:03:30 2005","","1","","","PG0246" "PG0224","281354","281593","240","TTGATTCTTCTCAGTTCATTGAATGTGATTGTCTTAGTCATGGGAATAATTTCGTCTTTTTTTGTGGTTCAACAATCAGTTTGTTATTCTGCCCCTAACTTAGACATATTATTTGACAATACCAAAACTCAGGAGCTTCTATCCGCTCTTTATCCTGCAAAGGCTTGGCTTTGCCTCCGAGGGGAAAAAGCCGAAAAAAAGACGATGGATAAACGCTTGTGCTGTGAAAAAGGGAATACC","8.20","1.79","8908","LILLSSLNVIVLVMGIISSFFVVQQSVCYSAPNLDILFDNTKTQELLSALYPAKAWLCLRGEKAEKKTMDKRLCCEKGNT","281282 281593 [Bad Olap 289 113 0]","TIGR ID: PG0247","hypothetical protein","Periplasm, Inner membrane, Cytoplasm","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-25]?signal-peptide
tmhmm\"[9-29]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Wed Jun 13 16:18:15 MDT 2001","","Wed Jun 13 16:18:15 MDT 2001","Wed Jun 13 16:18:15 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Jun 13 16:18:15 MDT 2001","Wed Jun 13 16:18:15 MDT 2001","","","","","Thu Mar 8 11:45:28 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 8 11:45:28 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Mar 8 11:45:28 MST 2001","","","","","","","1","","","PG0247" "PG0225","281932","281603","330","ATGAGTGACTGGAAGAACAGACTGGGGGTCATGTACAGTACGAATCCCGATTTCCAATACGAACATGAAGATAGCGAAGAGGTAGCTGAGACGCTTCCTCCGGAGAAACAACGTCTGCGTATCACGCTGGATCGGAAGCAGCGTCGGGGCAAAGAGGTCACCCTTGTGAGCGGACACGTCGGTTCCGCCGACGATCTGACTGATCTGTCGCGCCTGCTCAAGCAGCGATGCGGAGTGGGAGGAGCAGCCAAAGACGGAGAAATAATCATCCAAGGCAATCAGGTCGAAAAGGTGAAAGAGATACTACGAAGTTTGCACTATGGTGTGAAG","7.60","0.67","12447","MSDWKNRLGVMYSTNPDFQYEHEDSEEVAETLPPEKQRLRITLDRKQRRGKEVTLVSGHVGSADDLTDLSRLLKQRCGVGGAAKDGEIIIQGNQVEKVKEILRSLHYGVK","281932 281603","TIGR ID: PG0248","translation initiation factor SUI1","Cytoplasm","Numerous weak hits in gapped BLAST; e.g. residues 11-110 are 36% similar to dbj|BAA10487.1| hypothetical protein of Synechocystis sp., residues 28-107 are 37% similar to gb|AAB84511.1| ribosomal protein SUI1 of Methanothermobacter thermautotrophicus, residues 27-107 are 39% similar to dbj|BAA80629.1| 101aa long hypothetical protein translation factor SUI1 of Aeropyrum pernix.","
InterPro
IPR001950
Domain
Translation initiation factor SUI1
PF01253\"[33-110]TSUI1
PS50296\"[46-106]TSUI1
SSF55159\"[34-110]TTIF_SUI1
noIPR
unintegrated
unintegrated
G3DSA:3.30.780.10\"[34-110]TG3DSA:3.30.780.10


","BeTs to 7 clades of COG0023COG name: Translation initiation factor (SUI1)Functional Class: JThe phylogenetic pattern of COG0023 is amtkY--ce--h---------Number of proteins in this genome belonging to this COG is 1","***** IPB001950 (Translation initiation factor SUI1) with a combined E-value of 1.8e-07. IPB001950A 40-54 IPB001950B 67-81 IPB001950C 87-106","Residues 25-110 are 43% similar to a (PROTEIN TRANSLATION BIOSYNTHESIS REGULATION FACTOR SUI1) protein domain (PD006070) which is seen in Y546_SYNY3.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Apr 6 13:55:59 MDT 2001","Thu Mar 8 11:53:30 MST 2001","Thu Mar 8 11:53:30 MST 2001","Thu Mar 8 11:53:30 MST 2001","Thu Mar 8 11:53:30 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 8 11:53:30 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 33 to 110 (E-value = 1.8e-13) place PG0225 in the SUI1 family which is described as Translation initiation factor SUI1 (PF01253)","Thu Mar 8 11:53:30 MST 2001","34540095","","","","","","1","","","PG0248" "PG0226","283888","282032","1857","ATGAAGAAGGAAATCAAATTCAGTCTGATGTACCGCGACATGTGGCAGTCGTCAGGCAAGTACCAACCACGAAAAGATCAATTGGAACGCATAGCTCCCGTTATTGTGGAGATGGGTTGCTTTGCGCGAGTGGAAACGAACGGAGGTGCATTCGAGCAGGTGAATCTCCTGTATGGGGAGAACCCCAACAAAGCAGTGCGCGCTTTCACCAAACCGCTCAACGAAGCGGGTATTCAGACCCACATGCTGGACCGCGGACTCAACGGACTTCGTATGTTCCCCGTACCGGCTGATGTGCGCCGGCTGATGTACAAGGTGAAGAAAGCACAGGGCGTGGACATCACACGTATATTCGATGGCCTGAATGATGCTCGCAATATCATTCCATCCATCAAATATGCACTGGAAGCCGGCATGATCCCACAGGCTACGCTTTGTATCACGTTCTCTCCCGTACACACGGTGGAGTACTACTCCAATCTGGCCGATGAGCTGATCGCAGCAGGGGCACCGGAGATCTGCCTGAAAGATATGGCCGGTATCGGTCGTCCTCATTTCCTCGGTCAGCTGGTGAAATCCATCAAGACCAAGCACCCCGATGTAATCATCGAATATCACGGCCACTCAGGTCCCGGCTTCTCTGTCGCTTCCATGCTGGAGGTTTGCGAGAATGGGGCTGACATCATCGACGTAGCTATGGAGCCTATCTCTTGGGGTAAGGTGCATCCGGATGTGATCACCATCCAGCAGATGCTCAAGGATGCCGGCTTCAAAGTGCCGGAGATCAATATGGATGCCTACATGAAAGCTCGAAGCCTGACACAGGAGTTTATAGACGACTTCTTGGGCTATTTCATGGATCCGTCGAACAAAGAGACGAGCTCGCTGCTCGTGGGATGCGGTCTCCCCGGCGGTATGATGGGATCCATGATGGCCGACCTGAAAGGGGTACATGCAGGTATCAATATGTTCCTCAAAGGAAAGGGCGAGCCGGAGATGACCATCGATCAGCTACTGGTACGTCTCTTCCAAGAGGTAGAGTATGTATGGCCGCGCCTTGGCTATCCTCCTTTGGTAACTCCTTTCAGCCAGTATGTGAAGAATGTTGCCCTGATGAACGTGTACAACATGATACGGGGCGAAGGGCGTTGGCAAGCCATCGACCAGAACACATGGGGTATGATCCTCGGCAAATCGGGCCGTTTGCCCGGCAAACTCGATCCGGAGATCATCGCTTTGGCAAAAGAGAAGGGAATGGAATTTTCGGATGCCGATCCTCAGCAATTTTATCCTGATGCCTTGGACGAATTTCGCAAGGAAATGGATCAGAACGGTTGGGAGTATGGCCCAGACGACGAAGAGCTATTCGAGCTTGCCATGCACGACCGTCAATATCGCGACTACAAGAGCGGCGTAGCCAAGGAGCGCTTCAATGCCGATCTGGACAAAGCCAAAGCCGATCGCATGGCTAAGCAGGGATATAGCGACGAAGACATCAAAAAAGCTAAGCGTGCCGGATGTGATCCGATCGTGGCACCCTGCTCCGGACGACTCTATTGGGAAATCGATACGGAAGAGCAATCCATCGCTCCGGCTATCGGTGCCGAATATCGTACCGGCCAGCCTTTCTGCTACATCGAAAACCAATTTGGCTATATCGAGAAAGTCTATTGTACATTCACCGGCCGTATTACGGAGGTAGTAGCACAAGGCACTGTGGTGAAAAAAGGCGATGAGATAGCTTATCTGCGCACAGCTGAAAAGGAGATCATGTGGGAGGGTGCGAATGAGCATATCGTTCGTGTCGAGACCATGCCTGAGCCGCGCAAGCGCATTACCAAGTCGGCCCAAAAGAAC","5.60","-9.95","69739","MKKEIKFSLMYRDMWQSSGKYQPRKDQLERIAPVIVEMGCFARVETNGGAFEQVNLLYGENPNKAVRAFTKPLNEAGIQTHMLDRGLNGLRMFPVPADVRRLMYKVKKAQGVDITRIFDGLNDARNIIPSIKYALEAGMIPQATLCITFSPVHTVEYYSNLADELIAAGAPEICLKDMAGIGRPHFLGQLVKSIKTKHPDVIIEYHGHSGPGFSVASMLEVCENGADIIDVAMEPISWGKVHPDVITIQQMLKDAGFKVPEINMDAYMKARSLTQEFIDDFLGYFMDPSNKETSSLLVGCGLPGGMMGSMMADLKGVHAGINMFLKGKGEPEMTIDQLLVRLFQEVEYVWPRLGYPPLVTPFSQYVKNVALMNVYNMIRGEGRWQAIDQNTWGMILGKSGRLPGKLDPEIIALAKEKGMEFSDADPQQFYPDALDEFRKEMDQNGWEYGPDDEELFELAMHDRQYRDYKSGVAKERFNADLDKAKADRMAKQGYSDEDIKKAKRAGCDPIVAPCSGRLYWEIDTEEQSIAPAIGAEYRTGQPFCYIENQFGYIEKVYCTFTGRITEVVAQGTVVKKGDEIAYLRTAEKEIMWEGANEHIVRVETMPEPRKRITKSAQKN","283888 282032","The beta subunit is PG1406.TIGR ID: PG0249","probable oxaloacetate decarboxylase alpha subunit (pyruvate carboxylase, C-terminal domain)","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 31-460 are 32% similar to gb|AAB89994.1| oxaloacetate decarboxylase, subunit alpha of Archaeoglobus fulgidus, residues 3-445 are 31% similar to gb|AAC07497.1| oxaloacetate decarboxylase alpha chain of Aquifex aeolicus, residues 41-441 are 32% similar to pir||H72415 methylmalonyl-CoA carboxyltransferase 5S chain homolog of Thermotoga maritima (strain MSB8). This sequence is similar to BT1196.","
InterPro
IPR000891
Domain
Pyruvate carboxyltransferase
PF00682\"[111-233]THMGL-like
PS50991\"[4-268]TPYR_CT
InterPro
IPR013785
Domain
Aldolase-type TIM barrel
G3DSA:3.20.20.70\"[11-278]TAldolase_TIM
noIPR
unintegrated
unintegrated
PTHR18866\"[1-323]T\"[344-583]TPTHR18866
PTHR18866:SF1\"[1-323]T\"[344-583]TPTHR18866:SF1
SSF51569\"[1-306]TSSF51569
SSF89000\"[302-490]TSSF89000


","BeTs to 10 clades of COG1038COG name: Pyruvate carboxylase, C-terminal domain/oxaloacetate decarboxylase, alpha subunitFunctional Class: EThe phylogenetic pattern of COG1038 is amtkYQv--br------l---Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 31-460 are 31% similar to a (PYRUVATE CARBOXYLASE BIOTIN LIGASE) protein domain (PD002904) which is seen in O29016_ARCFU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Tue Mar 26 15:13:52 2002","Fri Apr 6 14:01:22 MDT 2001","Thu Dec 4 11:47:12 2003","Tue Mar 26 15:13:52 2002","","Thu Mar 8 12:12:40 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 8 12:12:40 MST 2001","-46% similar to PDB:1RQB Propionibacterium shermanii transcarboxylase 5S subunit (E_value = 2.9E_36);-46% similar to PDB:1RQE Propionibacterium shermanii transcarboxylase 5S subunit bound to oxaloacetate (E_value = 2.9E_36);-46% similar to PDB:1RQH Propionibacterium shermanii transcarboxylase 5S subunit bound to pyruvic acid (E_value = 2.9E_36);-46% similar to PDB:1RR2 Propionibacterium shermanii transcarboxylase 5S subunit bound to 2-ketobutyric acid (E_value = 2.9E_36);-46% similar to PDB:1S3H Propionibacterium shermanii transcarboxylase 5S subunit A59T (E_value = 8.5E_36);","","","Residues 12 to 280 (E-value = 3.7e-06) place PG0226 in the HMGL-like family which is described as HMGL-like (PF00682)","Thu Mar 8 12:12:40 MST 2001","34540096","","","","","","1","","","PG0249" "PG0227","284190","284474","285","TTGTTTTTTGGTGCCGAAAGACGGAGAATTGCCGAGCCTAAAATCTCAAAAACTCGAACCACAAGGAAAATCTTTACGCGCGAGATTTTTTTGCTTTTGGCTCGAGTTTTATTTTTTTCTCGAACCATCTTTTTTCGATCCGCAATTATGCTTTTTCATGCTCCGCAACCGCTCGGAAAGCAATTCCTGCTACCTGTCGAGAAAGGCTTCGACAGCAGAGGCCGTGGTGCATACCGGCTCCCTTATGTAATAATAGGTATGCCTCATGTAATTCTTTCATCGATA","12.20","12.46","11038","LFFGAERRRIAEPKISKTRTTRKIFTREIFLLLARVLFFSRTIFFRSAIMLFHAPQPLGKQFLLPVEKGFDSRGRGAYRLPYVIIGMPHVILSSI","284190 284474","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-42]?signal-peptide
tmhmm\"[29-49]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG0228","284747","285202","456","ATGATAGACAGAGAACAAATCGTTCGGATCGTTTCGGATTATTTGTCCACCGGGGAGACTTTCCTCGTGGAGGTGGCGATACATCCGGGCAACAGGATCCTCGTAGAGCTGGATAGCGCACAAGGAGTTTGCATAGATGAGTGCGTAGCACTGAGCCGGCACATCGAATCCCAAGTGGATCGGGACATAGAAGACTACGAACTGGAAGTAGGCTCGACCGGGCTGACGTCTCCTCTGAAAGTGATGCGCCAGTGGGAGAACTGCATTGATAGCGAGCTGTCCGTACTGCTAACCAATGGGATGAAGGAAACCGGTCGCCTTATTACTGTCGCTCCCGAAGCTATCAAGCTGGAAGTGGTACGCATGGTGAAGCCGGAAGGAGCCAAGCGCAAAAAGCCTGAAACTCAAGAGTTGACAATAGTCATGGCCGACATCAAACAGGCCGTGCGTATCATA","4.70","-7.65","17002","MIDREQIVRIVSDYLSTGETFLVEVAIHPGNRILVELDSAQGVCIDECVALSRHIESQVDRDIEDYELEVGSTGLTSPLKVMRQWENCIDSELSVLLTNGMKETGRLITVAPEAIKLEVVRMVKPEGAKRKKPETQELTIVMADIKQAVRII","284747 285202","TIGR ID: PG0253","conserved hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR003728
Family
Protein of unknown function DUF150
PF02576\"[22-150]TDUF150
noIPR
unintegrated
unintegrated
SSF75420\"[4-76]TSSF75420


","BeTs to 7 clades of COG0779COG name: Uncharacterized BCR, YhbC familyFunctional Class:  SThe phylogenetic pattern of COG0779 is -----qvcebrhuj--ol--xNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Mar 1 14:51:31 MST 2001","","Thu Mar 1 14:51:31 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 14:51:31 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 10 to 150 (E-value = 8.6e-07) place PG0228 in the DUF150 family which is described as Uncharacterised BCR, YhbC family COG0779 (PF02576)","Thu Mar 1 14:51:31 MST 2001","34540098","","","","","","1","","","PG0253" "PG0229","285252","286583","1332","ATGGCCAAGAAGCAAGAGACGATCAGCATGATAGAATCGCTGGCAGAATTCAAAGAGCTGAAAAACATTGACAAAGAGACGATGATCAACGTCCTGGAGGATTCCTTCCGGAACGTTCTGGCAAAAATCTTCGGATCGGACGACAACTTCGACGTAATCATCAATCCGGAGAAAGGCGACTTCGAAATATGGCGCACCCGTCAGGTAGTAGAGGACGGTGCCGTAGAGGACGAAAGTCGCGAAGTGTCTCTGTCGGATGCTCACGAGATCGACCCCGAGGCGGAGGTCGGTGAGGAAGTAACGGACTCCGTGAACTTCGCTTCATTCGGTCGCCGTGCCATTCTCAATCTTCGCCAAGCTCTCTCCAGCAAGATTATGGAGCTTCAGAAGGAAAACCTGTTCAATACATTCACGGAACGTATCGGGCAGCTCATTTCGGCTGAAGTATATCAGGTATGGAAGCGTGAGGCTCTGCTTATCGACGACGACGGCAACGAACTCCTGATGCCGAAGAGCGAGCAGATCCCAAGCGACTTTTTCCGCAAAGGTGAGACCGTTCACGCCGTTGTGGAGCGCGTGGAGAACGCCAACAACAATCCCAAGATCATCGTATCGCGTACAAGCGGAGAGTTCCTCAAGAGGCTTTTCGAGCTGAATGTACCGGAGATTGCCGATGGCCTGATCACCATCCGCTGCGTAGCCCGTATCCCGGGAGAGAGGGCCAAGATGGCCGTAGAGTCTTACGACGATCGTATCGACCCCGTAGGAGCCTGTGTGGGTATGAACGGTTCGCGCATACGAGGTATCGTGCGCGAACTGAGAGGCGAGAATATCGACGTTACGCAGTACACGACGAACACCGCCCTCTTCATCCAGCGGGCACTCAGCCCTGCACGTATATCTTCGATTCGCCTGCTCGAAGCAGAGCATAAGGCCGAAGTATTCCTGCGCCCCGAAGAAGTGCCTTTGGCCATCGGAAAGAATGCCTCGAATATCAAGCTGGCATCGGGGCTGACGGGTTATCAGATCGAAGTGTTCCGTGACATAGACGATATGGACGAAGAAGACATCTATCTGGACGAATTCAACGACGAGATCGACCAGTGGATCATCGACCTGTTCAAGAATATCGGTTGCAATACGGCCAAGAGCGTGCTCAGCAAGAACAGAGAAGATCTGATCAAAGAGACGGATTTGGAAGACTCCACCATAGACTATGTACTCGGAGTCCTGAGTGCCGAATTTGCCGATGAGGATCAGGTGACTGATAATCAAAGTACCGATTCGGATGATTTGGACAATTTCTCTGCCGAAGACGATCTGAAGCAAGAG","4.20","-42.33","50208","MAKKQETISMIESLAEFKELKNIDKETMINVLEDSFRNVLAKIFGSDDNFDVIINPEKGDFEIWRTRQVVEDGAVEDESREVSLSDAHEIDPEAEVGEEVTDSVNFASFGRRAILNLRQALSSKIMELQKENLFNTFTERIGQLISAEVYQVWKREALLIDDDGNELLMPKSEQIPSDFFRKGETVHAVVERVENANNNPKIIVSRTSGEFLKRLFELNVPEIADGLITIRCVARIPGERAKMAVESYDDRIDPVGACVGMNGSRIRGIVRELRGENIDVTQYTTNTALFIQRALSPARISSIRLLEAEHKAEVFLRPEEVPLAIGKNASNIKLASGLTGYQIEVFRDIDDMDEEDIYLDEFNDEIDQWIIDLFKNIGCNTAKSVLSKNREDLIKETDLEDSTIDYVLGVLSAEFADEDQVTDNQSTDSDDLDNFSAEDDLKQE","285252 286583","TIGR ID: PG0254","N utilization substance protein A (NusA) (transcription termination-antitermination factor) (transcriptional terminator)","Cytoplasm","This sequence is similar to CT097 and to BT3403.Numerous significant hits in gapped BLAST to N utilization substance protein A (NusA); e.g. residues 8-345 are 38% similar to AE001815 of Thermotoga maritima, residues 2-353 are 34% similar to AP003006 of Mesorhizobium loti, residues 6-353 are 32% similar to AE002021 of Deinococcus radiodurans.","
InterPro
IPR003029
Domain
RNA binding S1
SM00316\"[140-207]TS1
InterPro
IPR004087
Domain
KH
SM00322\"[237-303]T\"[308-375]TKH
InterPro
IPR009019
Domain
KH, prokaryotic type
G3DSA:3.30.300.20\"[221-299]TKH_prok
SSF54814\"[207-285]T\"[286-351]TKH_prok
InterPro
IPR010213
Domain
Transcription termination factor NusA
TIGR01953\"[6-350]TNusA
InterPro
IPR012340
Domain
Nucleic acid-binding, OB-fold
G3DSA:2.40.50.140\"[158-220]TOB_NA_bd_sub
InterPro
IPR013735
Domain
NusA N-terminal
PF08529\"[19-132]TNusA_N
noIPR
unintegrated
unintegrated
G3DSA:3.30.1480.10\"[6-141]TG3DSA:3.30.1480.10
PTHR22648\"[1-439]TPTHR22648
SSF50249\"[138-206]TNucleic_acid_OB
SSF69705\"[6-133]TSSF69705


","BeTs to 15 clades of COG0195COG name: Transcription terminator NusAFunctional Class: KThe phylogenetic pattern of COG0195 is amTK-qvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 255-345 are 46% similar to a (PROTEIN TRANSCRIPTION NUSA TERMINATION) protein domain (PD002633) which is seen in P72688_SYNY3.Residues 21-98 are 32% similar to a (NUSA TRANSCRIPTION ANTITERMINATION FACTOR N UTILIZATION) protein domain (PD114530) which is seen in O07364_CHLTR.Residues 75-254 are 32% similar to a (PROTEIN SUBSTANCE A TRANSCRIPTION) protein domain (PD004993) which is seen in NUSA_THETH.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Jun 5 17:19:31 MDT 2001","Mon Dec 22 10:50:44 2003","Tue Jun 5 17:19:31 MDT 2001","","Tue Jun 5 17:19:31 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Jun 5 17:19:31 MDT 2001","-60% similar to PDB:1HH2 CRYSTAL STRUCTURE OF NUSA FROM THERMOTOGA MARITIMA (E_value = 9.8E_60);-60% similar to PDB:1L2F Crystal structure of NusA from Thermotoga maritima: a structure-based role of the N-terminal domain (E_value = 9.8E_60);-52% similar to PDB:1K0R Crystal Structure of Mycobacterium tuberculosis NusA (E_value = 5.4E_34);-55% similar to PDB:2ASB Structure of a Mycobacterium tuberculosis NusA-RNA complex (E_value = 1.1E_29);-55% similar to PDB:2ATW Structure of a Mycobacterium tuberculosis NusA-RNA complex (E_value = 1.1E_29);","","","No significant hits to the Pfam 11.0 database","Tue Jun 5 17:19:31 MDT 2001","34540099","","","","","","1","","","PG0254" "PG0230","286682","289618","2937","ATGTCAATAAAATTATTCAGCTTAGCTAAAGAGTTAAATGTAGGAGTAGGCTCCCTCGCCGGCTTTCTTCGGAAAAAAGGTTTCGATGTGGAGGACAACAATCCCAATGTTCGCATTGAGAATGAAGAGTTCGATCTGCTGCTGACCGAATTTGGCAAGTCGCTGCCCAAGGGTGAGGCCGAGCGCATTCGCAAGAAATTCGTCAAGCAAAAGCAAGGCACTCCTGCATCTGCTCCGTCCGCCAAAGAGGAAACCGCGGGAATGGCAGCGAAAGAAGCTCAGGTAATAGCTACGGAAGTGCCTCAAGACATGCGACCTCGCTTTACGATCAAAGGGAAAGTAGAGACCGAAAAGCCGGCTGAACCGGTTCCTTCGCCCAAGGACAAGGAGCCTGACACCGTGCGTGAGGACAAACCCGCAAGAGAAACTGCACCTGTAAAAGAGGAAACAAAGGTCGTCCCCGTCAAGGAAGATAAGCCCAAGGAAGAAAAACCAAAGCAAGAAGAGCCTAAACGGGAGGAACCCAAACCGGAGGAGCCTGTACAGGCGGCTCCCGTTGCCAAGCCGGTCGAAAAACCTGTGGATAAACCACAGCAACCGGTCATGACACAGAAACCTCAAGAAGCTGAAACACCTCCTCCGGCTCAAGAGATGGAGAAAAAAGAAGACACCGAAGAAGTTTTCCGTCTGAAGACCAACACGCAGGAGCCACAAGTGAAGGTGGTCGGAAAGATAGACCTCTCCTCGATCAATTCATCCACGCGTCCCAAAAAAAAGACGAAGGAAGACCGCCAGCGCGAGCAGAACGATGCCGATGGCAAGAAGAAACGCAAGCGCATCAACAAAGCTGCCGTAGATGTCAAGAAAGAGGCGGCAAAGGTGAGCGGAGAGCAGGGCAAACGTAATGCCGGAGGAGGAAACCATTCGTCCGGCAATAAGAACAACAACCGTCCGGCTCAGCAGCAGTCCAACGCTTCCGGAGGCCGCAAGAACAACAAGCGTCAGTCTCTCCCACCCAAGGTGGAGATCTCGGACGAAGATGTACAGAGACAAGTAAAAGAGACGCTGGCACGCCTCACGACGAAAAAAACAAGTACCACGCTCGGGCGTGGAGCCAAATACAGGAAGGACAAGCGTGATGCGGCTTCCCGTGCAGCTCAGGATGCCATGGAGCTGAACAGCGAAGAGCAGCACACACTGAAGCTGACCGAATTCGTTACCGTAAGTGACCTGTCCAATATGATGGACGTCCCCGTGAACGAAGTCATCGCCACTTGCATGAGTATCGGTATGATGGTCGGTATCAATCAGCGTCTCGATGCCGAAACGATCAATATCGTAGCTGAAGAATTTGGCTTCAAGACGGAGTTTGTCAGCGCGGATTTGGTAGAAGCCATTGCCCCCGAAGAGGATAATGAGGAAGACCTCGTTGCGCGTCCTCCGATCGTTACGGTCATGGGACACGTAGACCACGGTAAGACTTCGCTACTGGACCGCATTAGGAATACGAATGTGATCGAAGGGGAAGCAGGGGGTATCACCCAGCACATCGGAGCCTATGGTCTGAAACTTCCCAGTGGCCGCCGTATTACATTTTTGGATACGCCGGGACACGAAGCCTTTACGGCTATGCGTGCCCGTGGTGCGAAGATTACGGATATTGCCATCATTATCGTTGCTGCTGACGACGATGTGATGCCACAGACAGTCGAAGCCATCAATCATGCTTCAGCGGCAGGTGTGCCGATGGTATTCGCCATCAATAAGATAGACAAACCGGCTGCCAATCCCGAAAGGATCAAAGAGCAGCTTGCAAACATGAACTACCTCGTTGAGGACTGGGGTGGCAAATATCAAAGTCAGGAGATCTCGGCCAAGAAAGGCATCAACATCACCGAATTGCTGGAGAAGGTTCTGCTCGAAGCGGATATCTTAGAGCTGAAAGCCAATCCTAACCGCCGTGCCATCGGTTCGATCATCGAGTCTTCTCTGGACAAGGGAAGAGGTTATGTCTCCACTGTCATGGTACAGAACGGTACGCTCAATATGGGCGATGTGGTTCTGGCCGGTACCTGTCACGGACGCATCAAAGCCATGTTCAACGAACGGAATCAGCGCGTGAAGCAGGCAGGACCGTCCGAACCGGTACTAATCCTCGGTCTGAACGGCGCGCCGGCTGCCGGTGATACTTTCAATGTATTGGAGACGGAGCAGGAGGCTCGCGAAATAGCTAACCGCCGAGAGCAACTCCAGCGTGAGCAGGGATTGCGTACACACAAGATACTCACGCTCGAAGACATCAGCCGTCGCCGTGCAATCGGCAACTTCCAAGAGCTGAACCTCATTGTCAAGGGGGACGTGGACGGCTCGGTAGAAGCTTTGTCCGATTCGCTCATCCGTCTGTCTACAGAAGAAATCCAAGTCAATGTCATCCACAAAGCTGTGGGGCAGATTTCCGAATCGGATGTGGTGCTCGCAGCAGCTTCATCTGCTATTATCATCGGATTCCAGGTTCGTCCCAGCGTGGCTGCCCGCAAGCAAGCGGAAACCGATGGCGTAGAGATCCGTACCTATTCTATTATCTACGACACGATCGAAGACATCAAGTCTGCCATGGAGGGCATGCTTTCGCCTGAGATTCGCGAAGAGGTTACCGGCTCTCTGGAAGTATTGCAGACCTTTAAGATCAGTAAGGTCGGTACGATCGCCGGTTGTATGGTCAAGGAAGGTAAGGTCAAGCGAACAAGCAAGGTTCGTCTCATACGCGACGGTATAGTGATCCACACCGGAGAGCTTGGCTCTCTGAAACGATTCAAGGACGATGCCAAGGAAGTGGTGGCCGGACTCGAATGCGGTCTTAATCTGGCTCACTCGAACGACATCCAAGATGGTGATATAATCGAAGCTTTCGACGAGATCGAAATCAAAAAGACTCTC","6.50","-4.13","107532","MSIKLFSLAKELNVGVGSLAGFLRKKGFDVEDNNPNVRIENEEFDLLLTEFGKSLPKGEAERIRKKFVKQKQGTPASAPSAKEETAGMAAKEAQVIATEVPQDMRPRFTIKGKVETEKPAEPVPSPKDKEPDTVREDKPARETAPVKEETKVVPVKEDKPKEEKPKQEEPKREEPKPEEPVQAAPVAKPVEKPVDKPQQPVMTQKPQEAETPPPAQEMEKKEDTEEVFRLKTNTQEPQVKVVGKIDLSSINSSTRPKKKTKEDRQREQNDADGKKKRKRINKAAVDVKKEAAKVSGEQGKRNAGGGNHSSGNKNNNRPAQQQSNASGGRKNNKRQSLPPKVEISDEDVQRQVKETLARLTTKKTSTTLGRGAKYRKDKRDAASRAAQDAMELNSEEQHTLKLTEFVTVSDLSNMMDVPVNEVIATCMSIGMMVGINQRLDAETINIVAEEFGFKTEFVSADLVEAIAPEEDNEEDLVARPPIVTVMGHVDHGKTSLLDRIRNTNVIEGEAGGITQHIGAYGLKLPSGRRITFLDTPGHEAFTAMRARGAKITDIAIIIVAADDDVMPQTVEAINHASAAGVPMVFAINKIDKPAANPERIKEQLANMNYLVEDWGGKYQSQEISAKKGINITELLEKVLLEADILELKANPNRRAIGSIIESSLDKGRGYVSTVMVQNGTLNMGDVVLAGTCHGRIKAMFNERNQRVKQAGPSEPVLILGLNGAPAAGDTFNVLETEQEAREIANRREQLQREQGLRTHKILTLEDISRRRAIGNFQELNLIVKGDVDGSVEALSDSLIRLSTEEIQVNVIHKAVGQISESDVVLAAASSAIIIGFQVRPSVAARKQAETDGVEIRTYSIIYDTIEDIKSAMEGMLSPEIREEVTGSLEVLQTFKISKVGTIAGCMVKEGKVKRTSKVRLIRDGIVIHTGELGSLKRFKDDAKEVVAGLECGLNLAHSNDIQDGDIIEAFDEIEIKKTL","286682 289618","TIGR ID: PG0255","translation initiation factor IF-2","Cytoplasm","Gapped BLAST with a low complexity filter shows numerous hits from residues 400-979 to translation initiation factors, IF-2.This sequence is similar to CT096 and to BT3404.","
InterPro
IPR000178
Family
Initiation factor 2
PD186100\"[603-706]TIF2
TIGR00487\"[395-979]TIF-2
PS01176\"[930-952]TIF2
InterPro
IPR000795
Domain
Protein synthesis factor, GTP-binding
PF00009\"[478-646]TGTP_EFTU
InterPro
IPR004161
Domain
Translation elongation factor EFTu/EF1A, domain 2
PF03144\"[669-732]T\"[900-968]TGTP_EFTU_D2
InterPro
IPR005225
Domain
Small GTP-binding protein domain
TIGR00231\"[478-640]Tsmall_GTP
InterPro
IPR006847
Domain
Translation initiation factor IF-2, N-terminal
PF04760\"[403-454]TIF2_N
InterPro
IPR009000
Domain
Translation elongation and initiation factors/Ribosomal, beta-barrel
SSF50447\"[651-735]T\"[880-978]TTranslat_factor
InterPro
IPR015760
Domain
Translation initiation factor 2 related
PTHR23115:SF41\"[147-242]T\"[273-742]T\"[869-891]TaIF-2
noIPR
unintegrated
unintegrated
G3DSA:2.40.30.10\"[880-978]TG3DSA:2.40.30.10
G3DSA:3.40.50.10050\"[779-858]TG3DSA:3.40.50.10050
G3DSA:3.40.50.300\"[477-663]TG3DSA:3.40.50.300
PTHR23115\"[147-242]T\"[273-742]T\"[869-891]TPTHR23115
SSF52156\"[755-886]TSSF52156
SSF52540\"[457-654]TSSF52540


","BeTs to 17 clades of COG0532COG name: Translation initiation factor 2 (GTPase)Functional Class: JThe phylogenetic pattern of COG0532 is aMtKYqvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB000178 (Initiation factor 2) with a combined E-value of 2.9e-212. IPB000178B 479-520 IPB000178C 530-576 IPB000178D 598-651 IPB000178E 679-729 IPB000178F 777-820 IPB000178G 822-876 IPB000178H 919-965***** IPB000795 (GTP-binding elongation factor) with a combined E-value of 3.6e-24. IPB000795A 482-497 IPB000795B 533-564 IPB000795C 568-592 IPB000795A 502-517","Residues 406-481 are 36% similar to a (INITIATION FACTOR PROTEIN IF-2) protein domain (PD004037) which is seen in IF2_BORBU.Residues 479-530 are 69% similar to a (INITIATION FACTOR PROTEIN TRANSLATION BIOSYNTHESIS) protein domain (PD035124) which is seen in O93625_HALHA.Residues 876-970 are 62% similar to a (INITIATION FACTOR PROTEIN IF-2 BIOSYNTHESIS GTP-BINDING) protein domain (PD186100) which is seen in IF2_BACST.Residues 646-870 are 47% similar to a (INITIATION FACTOR PROTEIN BIOSYNTHESIS GTP-BINDING IF-2) protein domain (PD002098) which is seen in IF2_BACST.Residues 482-639 are 61% similar to a (PROTEIN GTP-BINDING LIPOPROTEIN PRENYLATION RAS-RELATED) protein domain (PD000015) which is seen in Q9ZF20_STRAG.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Mar 22 12:14:27 MST 2000","Mon Dec 22 10:52:17 2003","Mon Mar 12 16:22:15 MST 2001","Mon Mar 12 16:22:15 MST 2001","Mon Mar 12 16:22:15 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 485-910 are 22% similar to PG1097, a GTP-binding protein (possible membrane protein) and residues 483-751 are 25% similar to PG0553, a GTP-binding elongation factor family protein, while residues 483-687 are 29% similar to PG0353, elongation factor Tu.","Mon Mar 12 16:22:15 MST 2001","Mon Mar 12 16:22:15 MST 2001","-69% similar to PDB:1ZO1 IF2, IF1, and tRNA fitted to cryo-EM data OF E. COLI 70S initiation complex (E_value = 8.5E_142);-77% similar to PDB:1D1N SOLUTION STRUCTURE OF THE FMET-TRNAFMET BINDING DOMAIN OF BECILLUS STEAROTHERMOPHILLUS TRANSLATION INITIATION FACTOR IF2 (E_value = 2.4E_27);-41% similar to PDB:1G7R X-RAY STRUCTURE OF TRANSLATION INITIATION FACTOR IF2/EIF5B (E_value = 2.5E_24);-41% similar to PDB:1G7S X-RAY STRUCTURE OF TRANSLATION INITIATION FACTOR IF2/EIF5B COMPLEXED WITH GDP (E_value = 2.5E_24);-41% similar to PDB:1G7T X-RAY STRUCTURE OF TRANSLATION INITIATION FACTOR IF2/EIF5B COMPLEXED WITH GDPNP (E_value = 2.5E_24);","","","Residues 403 to 454 (E-value = 4e-13) place PG0230 in the IF2_N family which is described as Translation initiation factor IF-2, N-terminal region (PF04760)Residues 478 to 646 (E-value = 3.1e-47) place PG0230 in the GTP_EFTU family which is described as Elongation factor Tu GTP binding domain (PF00009)Residues 669 to 732 (E-value = 6.6e-10) place PG0230 in the GTP_EFTU_D2 family which is described as Elongation factor Tu domain 2 (PF03144)Residues 900 to 968 (E-value = 2.1e-08) place PG0230 in the GTP_EFTU_D2 family which is described as Elongation factor Tu domain 2 (PF03144)","Mon Dec 22 10:52:17 2003","34540100","","","","","","1","","","PG0255" "PG0231","289649","290137","489","ATGAACGCGATCGATTTAGCCATACTGATAATTTTGGCGATAGGATTACTGAAAGGCCTGTTTGATGGTATCATCAAACAGGCAGTTTCACTTATAGCCATAGTCGTTGCCACGTATGGTTGTGCCTTACTTGCCGTTCCCATAGAGACGTGGATCGGACCTTTTTTCGGCCTTTCACGAGGCGTGGCTCATACTTTTGCTTTGATCGTTGGGTTCTTGGCTATTTTGATTATCATCCCGATGGTCGGCAATAAGGTCTCGAAAATCGTTGGCAAGACTCCTATCGGCATTCTCAATCACTTGGCCGGCGGAATAGTCGGGATAGGTATAGCAGCTATTCTGATGAGCTATCTTTTCCTGATTGCCGACAATGTTTTTTCAAGAGACGAAGCGGACAGTGACAATCCGTCCCTTCGCAATACTTCGATGCTGTATGACCATGTAAAAAACATAGTCCCAACTTTTAGCCCCCATCGGCTGTTTATGAAT","8.40","1.89","17366","MNAIDLAILIILAIGLLKGLFDGIIKQAVSLIAIVVATYGCALLAVPIETWIGPFFGLSRGVAHTFALIVGFLAILIIIPMVGNKVSKIVGKTPIGILNHLAGGIVGIGIAAILMSYLFLIADNVFSRDEADSDNPSLRNTSMLYDHVKNIVPTFSPHRLFMN","289649 290137","TIGR ID: PG0256","possible CvpA family protein","Inner membrane, Cytoplasm","This sequence corresponds to gi:34396412 in Genbank.","
InterPro
IPR003825
Family
Colicin V production protein
PF02674\"[3-161]TColicin_V


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Mar 1 14:39:25 2005","Tue Mar 1 14:39:25 2005","Thu Mar 1 14:49:01 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 14:49:01 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Mar 1 14:49:01 MST 2001","34540101","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Tue Mar 1 14:39:25 2005","","1","","","PG0256" "PG0232","290174","291616","1443","ATGCAAGAGAACAATAATATATTGGATGAGGTTACAGGCAGTGAATATAAATACGGCTTCGTAACCGACATCGAAACAGAAACTATAGGACGCGGACTTTCCGAAGATACAGTTCGTCTCATATCTGCGAAGAAGGAAGAGCCGGAATGGCTTCTCGAATTCCGCCTGAATGCCTATAGGCACTGGCTCTCTATGAAAGAGCCCGACTGGGCACACCTCAATATTCCACCGATAGACTACCAAGATATTATCTATTATGCAGCTCCGAAAAAGAAAAAGGGGCCCAAGAGTTTGGACGAAGTGGATCCCGAACTACTGAAGACATTCGACAAGCTCGGCATTCCACTCGAAGAGCAGAAGATTTTGAGTGGAATGGCTGTGGATGCAGTGATGGACAGTGTATCAGTGAAAACAACTTTCAAAGAAAAACTGGCAGAGAAAGGAATCATCTTCTGTTCTTTCAGCGAGGCTGTGAAGGATTTCCCCGATTTGGTCAAGAAATATCTGGGTACAGTCGTTAGCAGTAAGGACAACTTCTTTGCAGCTCTCAACTCTGCCGTATTTAGCGACGGCTCCTTTGTGTATATCCCCAAAGGCGTCAGATGTCCGATGGAGCTTTCTACTTATTTCCGAATCAATGCAGCCAATACAGGACAGTTCGAACGAACGCTGATCGTTGCCGATGAGGATTCTTATGTGAGCTATCTTGAAGGCTGTACGGCTCCCCAGCGGGATGAAAATCAACTTCATGCTGCAATCGTGGAGATCATTGCCGAGACCAATGCGGAAGTCAAGTATTCTACGGTACAGAATTGGTATCCCGGAGACAAAGAGGGTAAAGGCGGTATCTACAACTTCGTGACCAAGCGAGGTGTCTGCAAAGGCGACAATTCAAAAATATCTTGGACGCAGGTCGAGACAGGTTCTGCCATCACATGGAAATATCCCAGCTGTGTCCTGCGTGGCGACAATTCGATAGCGGAGTTTTACTCCGTTGCTGTTACCAATAATTTCCAGCAGGCAGATACGGGTACGAAGATGATCCATCTCGGCAAAAATACCCGTAGCCGTATCGTATCGAAAGGTATATCGGCCGGTTCAAGTCAGAACAGCTACCGAGGATTGGTCAAGATCTCCAAGAATGCGGTCAATGCTCGTAACCATTCGCAATGCGACAGTCTACTGCTTAGCGATCACTGCGGTGCTCATACATACCCTTATGCGGATGTCCAAAACGATACGGCTATCATCGAGCATGAAGCTACGACATCCAAGATCAGTGAAGAGCAGATATTCTACTGCAACCAAAGAGGAATCGGTACGGAAGAGGCCGTAGGGCTGATCGTCAACGGTTATGCCAAAGAAGTGATGAATAAACTGCTTATGGAATTTGCCGTAGAGGCACAGAAACTACTTAGTATCTCTCTCGAAGGATCGGTGGGA","5.20","-11.40","53495","MQENNNILDEVTGSEYKYGFVTDIETETIGRGLSEDTVRLISAKKEEPEWLLEFRLNAYRHWLSMKEPDWAHLNIPPIDYQDIIYYAAPKKKKGPKSLDEVDPELLKTFDKLGIPLEEQKILSGMAVDAVMDSVSVKTTFKEKLAEKGIIFCSFSEAVKDFPDLVKKYLGTVVSSKDNFFAALNSAVFSDGSFVYIPKGVRCPMELSTYFRINAANTGQFERTLIVADEDSYVSYLEGCTAPQRDENQLHAAIVEIIAETNAEVKYSTVQNWYPGDKEGKGGIYNFVTKRGVCKGDNSKISWTQVETGSAITWKYPSCVLRGDNSIAEFYSVAVTNNFQQADTGTKMIHLGKNTRSRIVSKGISAGSSQNSYRGLVKISKNAVNARNHSQCDSLLLSDHCGAHTYPYADVQNDTAIIEHEATTSKISEEQIFYCNQRGIGTEEAVGLIVNGYAKEVMNKLLMEFAVEAQKLLSISLEGSVG","290174 291616","PG0478 is another possible subunit of ABC transporter.TIGR ID: PG0257","ABC transporter subunit","Outer membrane, Cytoplasm","Gapped BLAST shows numerous high similarity hits including residues 5-481 show 70% similarity to ref|NP_043219, a ABC transporter subunit in Cyanophora paradoxa, residues 40481 show 70% similarity to sp|Q55790, an ABC transporter subunit in Synechocystis sp. and residues 3-491 show 67% similarity to gb|AAF84285, an ABC transporter membrane protein in Xylella fastidiosa.This sequence is similar to BT3406.","
InterPro
IPR000825
Family
SufBD
PF01458\"[212-452]TUPF0051
InterPro
IPR010231
Family
FeS assembly protein SufB
TIGR01980\"[14-472]TsufB
noIPR
unintegrated
unintegrated
SSF101960\"[35-479]TSSF101960


","BeTs to 11 clades of COG0719COG name: Predicted membrane components of an uncharacterized iron-regulated ABC-type transporter SufBFunctional Class: RThe phylogenetic pattern of COG0719 is amtK--VCEBR------LIN-Number of proteins in this genome belonging to this COG is 2","***** PF01458 (Uncharacterized protein family (UPF0051)) with a combined E-value of 8.5e-68. PF01458A 31-56 PF01458B 176-187 PF01458C 312-336 PF01458D 395-449","Residues 179-478 are 75% similar to a (PROTEIN ABC TRANSPORTER YCF24) protein domain (PD003219) which is seen in YC24_CYAPA.Residues 31-178 are 59% similar to a (PROTEIN YCF24 CHLOROPLAST ABC) protein domain (PD005891) which is seen in YC24_CYAPA.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Tue Mar 26 15:19:36 2002","Mon Mar 12 17:43:32 MST 2001","Mon Dec 22 10:53:55 2003","Tue Mar 26 15:18:10 2002","Mon Mar 12 17:32:32 MST 2001","Mon Mar 12 17:32:32 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 147-463 show 21% similarity to PG0235, a conserved hypothetical protein (possible ABC transporter-related membrane protein).","Mon Mar 12 17:32:32 MST 2001","Mon Mar 12 17:32:32 MST 2001","-46% similar to PDB:1VH4 Crystal structure of a stabilizer of iron transporter (E_value = 3.8E_12);-48% similar to PDB:1LJR GLUTATHIONE TRANSFERASE (HGST T2-2) FROM HUMAN (E_value = 3.8E_12);-48% similar to PDB:2LJR GLUTATHIONE TRANSFERASE APO-FORM FROM HUMAN (E_value = 3.8E_12);-48% similar to PDB:3LJR GLUTATHIONE TRANSFERASE (THETA CLASS) FROM HUMAN IN COMPLEX WITH THE GLUTATHIONE CONJUGATE OF 1-MENAPHTHYL SULFATE (E_value = 3.8E_12);","","","Residues 212 to 452 (E-value = 7.7e-139) place PG0232 in the UPF0051 family which is described as Uncharacterized protein family (UPF0051) (PF01458)","Mon Mar 12 17:32:32 MST 2001","34540102","","","","","","1","","","PG0257" "PG0233","291659","292408","750","ATGCTTAAGATAAAGAACCTCCACGCCACAGTACAGGGCAAAGAGATATTGAAAGGAATCAATCTGGAGATCAATGCCGGAGAGATTCATGCTATCATGGGGCCGAACGGATCGGGGAAAAGTACGCTCTCTTCCGTTTTGGTGGGACATCCCTCCTTTGAAGTCACGGAAGGAGAGGTGACATTCAATGGAATCGACCTGCTCGAACTCGAACCGGAAGAACGTGCACACCTCGGACTCTTTCTCAGTTTCCAATATCCGGTCGAGATCCCGGGCGTCAGCATGGTGAATTTCATGAGGGCAGCTGTCAATGAACATAGGAAAGCGATCGGAGCAGAACCCGTATCGGCAAGCGACTTCCTCAAGATGATGCGAGAGAAGCGTGCCATTGTGGAGCTGGACAACAAATTGGCCAGCCGTTCTGTGAACGAAGGCTTCTCCGGTGGAGAAAAAAAGAGGAACGAAATCTTCCAAATGGCTATGCTCGAACCCAAGCTGGCTATTTTGGACGAAACCGATAGCGGGCTCGATATCGACGCTCTCCGCATCGTAGCAGGCGGGGTAAACCGACTCCGCTCTCCGGAGAATGCTGCTATTGTGATCACACACTATCAGCGTTTGCTCGAGTACATCAAGCCGGACTTCGTACACGTCCTTTACAAGGGGCGCATCGTCAAGTCGGGAGGAGCCGAGCTGGCTCTCACGCTCGAAGAAAAAGGCTACGACTGGATCAAGGAAGAGATAGGAGAA","5.50","-6.29","27580","MLKIKNLHATVQGKEILKGINLEINAGEIHAIMGPNGSGKSTLSSVLVGHPSFEVTEGEVTFNGIDLLELEPEERAHLGLFLSFQYPVEIPGVSMVNFMRAAVNEHRKAIGAEPVSASDFLKMMREKRAIVELDNKLASRSVNEGFSGGEKKRNEIFQMAMLEPKLAILDETDSGLDIDALRIVAGGVNRLRSPENAAIVITHYQRLLEYIKPDFVHVLYKGRIVKSGGAELALTLEEKGYDWIKEEIGE","291659 292408 [Shadowed by 304]","See ABC Transporters Analysis.TIGR ID: PG0258","ABC transporter ATPase","Cytoplasm, Inner membrane","Numerous significant hits to ABC transporter proteins in gapped BLAST; e.g. residues 1-248 are 64% similar to gb|AAF84284.1|AE003977_7 ABC transporter ATP-binding protein of Xylella fastidiosa, residues 1-246 are 63% similar to gb|AAA81249.1| ABC transporter subunit of Cyanophora paradoxa, residues 1-248 are 62% similar to dbj|BAA10543.1| ABC transporter subunit of Synechocystis sp.This sequence is similar to BT3407.","
InterPro
IPR003439
Domain
ABC transporter related
PD000006\"[147-184]TABC_transporter
PF00005\"[27-222]TABC_tran
PS50893\"[2-246]TABC_TRANSPORTER_2
InterPro
IPR003593
Domain
AAA+ ATPase, core
SM00382\"[26-223]TAAA
InterPro
IPR010230
Family
FeS assembly ATPase SufC
PTHR19222:SF6\"[2-236]TSufC
TIGR01978\"[2-244]TsufC
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[1-231]TG3DSA:3.40.50.300
PTHR19222\"[2-236]TPTHR19222
SSF52540\"[2-231]TSSF52540


","BeTs to 11 clades of COG0396COG name: Iron-regulated ABC transporter ATPase subunit SufCFunctional Class: RThe phylogenetic pattern of COG0396 is amtK--Vcebr------lin-Number of proteins in this genome belonging to this COG is 1","***** IPB001617 (ABC transporters family) with a combined E-value of 2.1e-09. IPB001617A 32-47 IPB001617B 147-158","Residues 72-145 are 45% similar to a (TRANSPORTER ATP-BINDING ATP-DEPENDENT) protein domain (PD006006) which is seen in ABCX_ODOSI.Residues 17-70 are 68% similar to a (ATP-BINDING TRANSPORT PROTEIN TRANSPORTER ABC) protein domain (PD000005) which is seen in ABCX_CYAPA.Residues 146-185 are 90% similar to a (ATP-BINDING TRANSPORT PROTEIN TRANSPORTER ABC) protein domain (PD000006) which is seen in ABCX_CYAPA.Residues 189-246 are 67% similar to a (TRANSPORTER ATP-BINDING ATP-DEPENDENT) protein domain (PD005991) which is seen in Y075_SYNY3.Residues 146-188 are 79% similar to a (PROBABLE ATP-DEPENDENT TRANSPORTER YCF16) protein domain (PD195750) which is seen in ABCX_GUITH.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Mon Dec 22 10:55:26 2003","Tue Dec 12 10:34:28 MST 2000","Mon Dec 22 10:55:26 2003","Wed Mar 14 14:30:13 MST 2001","Wed Mar 14 14:30:13 MST 2001","Wed Mar 14 14:30:13 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG0233 shows 21-28% similarity to the following genes: PG0254 ABC transporter/ATP-binding proteinPG0566 ABC transporter proteinPG0618 ABC transport component, ATPase componentPG0844 ABC transporter protein PG0903 ABC transporter, ATP binding proteinPG0921 oligopeptide ABC transporter PG1048 ABC transporter, ATP-binding proteinPG1049 ABC transporter proteinPG1211 ABC transporter (exact function unknown) PG1451 ABC transporter protein, ATP-binding protein PG1477 ABC transporter ATPase PG1497 ABC transporter protein, MSD-NBD fusion proteinPG1533 ABC transporter PG1917 cell-division ATP-binding protein PG1929 ABC transporter protein,NBD-NBD fusion protein ","Wed Mar 14 14:31:29 MST 2001","Wed Mar 14 14:30:13 MST 2001","-77% similar to PDB:2D3W Crystal Structure of Escherichia coli SufC, an ATPase compenent of the SUF iron-sulfur cluster assembly machinery (E_value = 2.8E_81);-75% similar to PDB:2D2E Crystal structure of atypical cytoplasmic ABC-ATPase SufC from Thermus thermophilus HB8 (E_value = 9.3E_77);-75% similar to PDB:2D2F Crystal structure of atypical cytoplasmic ABC-ATPase SufC from Thermus thermophilus HB8 (E_value = 9.3E_77);-50% similar to PDB:1GAJ CRYSTAL STRUCTURE OF A NUCLEOTIDE-FREE ATP-BINDING CASSETTE FROM AN ABC TRANSPORTER (E_value = 8.8E_19);-49% similar to PDB:1G6H CRYSTAL STRUCTURE OF THE ADP CONFORMATION OF MJ1267, AN ATP-BINDING CASSETTE OF AN ABC TRANSPORTER (E_value = 3.3E_18);","","","Residues 27 to 222 (E-value = 4.9e-31) place PG0233 in the ABC_tran family which is described as ABC transporter (PF00005)","Wed Mar 14 14:30:13 MST 2001","34540103","","","","","","1","","","PG0258" "PG0235","292418","293758","1341","ATGAAGGTAGAAGAACAATATCTGCAACTCTTCCGAGAGAATCGCGAAGCAATAGACAGCCACTCCCCACGGGTACTCAATGAGCAACGGGAGAAGGCGTCGATGGCTTTCGCCTCGAAGGGGTTGCCTCGGTATGGCACTGAGAACTATCAGCGTACCGATTTGTCTGAACTATTCGGTTATGACTACGGAGTAAACCTGAATCGTGTCAATTTCCCAATCAGACAGAAAGAAGCTTTTCATTGTACGTTGCCGGATTTGGACACGGATCTTTGCTACATTGTCAATGATGCATACGATAACGAATGGAGTCGCGTATCCGAATTGCCGGAAGGAGCATTTGTCGGCAGTCTGAGCGATTTTGCCCTCAGCCATCCGGAGATAGCAGCTCGTTATTATGCTCAAGCCGCTGCACCCGATCACGATGGCATCATTGCATTCAGCACGATGTTTGCTCAAGATGGATTCATCATATATCTGCCGGATGGTGCTGTACTGAAGAATCCGATCCAGCTCGTACAACTGCTCAGAGCCGACATGGAGATTCTCGCCAATCGTCGGTTACTCATCATCTTGGGAAAAGATGCCGAAGCCTCTCTGCTGATATGCGAACACACGCTGGATACGCATTCTTTCCTCGTAACGGAAGTCGTGGAGATATTCGCTGCGGAGAACAGTCGATTCGCCTTGTACGATCTTGAAGAAAGCAGCAAGAATACCAAACGTATAGCATCGGTTCATGTACGTCAAGCCGAGAATTCGAATGTGACGATCAACTGCATGACGATTCACAACGGTCTGACACGCAACAACTACTACTGCCATCTTGAAGGAGAAGGGGCTGATCTGACCTTGGGCGGAATGGCTATTGCCGAAGGGAAACAGCATGTCGATAACTACAGCAGGATAGAGCATCTCGTTCCCAACTGCCAAAGCAATGAACTCTTCAAATACATTCTCAGCCGGCAGGCGCAGGGAGCTTTCTCCGGACGAATCTATGTGGCGAAAGGGGCACAGAAAACGGCAGCTTATCAGAACAATCGCAACCTCCTTCTGGATGATACGGCTCGCATGTACTCCAAGCCGCAGTTGGAGATCTATGCCGATGATGTGAAGTGTTCGCATGGTATGACTACGGGGCAGCTGGACGACGACGCTCTCTTCTATCTGCGTCAGCGCGGCATTCCTCTGGCTGAAGCCAAGACTATGCTTAGCGTGGCCTTTACCGATGATGTAGTCAAGCTGGTTCATATCGAGCAGCTTCGTGAACGTCTGCGCGACATTATCGAACATCGGTTCCGCGGAGGCTGCATGCGGTGTGGCTCCTGCAATATCTGCTAC","5.50","-12.11","50601","MKVEEQYLQLFRENREAIDSHSPRVLNEQREKASMAFASKGLPRYGTENYQRTDLSELFGYDYGVNLNRVNFPIRQKEAFHCTLPDLDTDLCYIVNDAYDNEWSRVSELPEGAFVGSLSDFALSHPEIAARYYAQAAAPDHDGIIAFSTMFAQDGFIIYLPDGAVLKNPIQLVQLLRADMEILANRRLLIILGKDAEASLLICEHTLDTHSFLVTEVVEIFAAENSRFALYDLEESSKNTKRIASVHVRQAENSNVTINCMTIHNGLTRNNYYCHLEGEGADLTLGGMAIAEGKQHVDNYSRIEHLVPNCQSNELFKYILSRQAQGAFSGRIYVAKGAQKTAAYQNNRNLLLDDTARMYSKPQLEIYADDVKCSHGMTTGQLDDDALFYLRQRGIPLAEAKTMLSVAFTDDVVKLVHIEQLRERLRDIIEHRFRGGCMRCGSCNICY","292418 293758","TIGR ID: PG0259","conserved hypothetical protein (possible ABC transporter related membrane protein)","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 5-432 are 28% similar to dbj|BAA10544.1| hypothetical protein of Synechocystis sp., residues 152-434 are 31% similar to emb|CAC17127.1| SufD protein of Pectobacterium chrysanthemi, residues 84-416 are 28% similar to gb|AAF84283.1|AE003977_6 ABC transporter membrane protein of Xylella fastidiosa.This sequence is similar to BT3408.","
InterPro
IPR000825
Family
SufBD
PF01458\"[177-408]TUPF0051
InterPro
IPR011542
Family
FeS assembly protein SufD
TIGR01981\"[42-425]TsufD
noIPR
unintegrated
unintegrated
SSF101960\"[10-436]TSSF101960


","BeTs to 10 clades of COG0719COG name: Predicted membrane components of an uncharacterized iron-regulated ABC-type transporter SufBFunctional Class: RThe phylogenetic pattern of COG0719 is amtK--VCEBR------LIN-Number of proteins in this genome belonging to this COG is 2","***** PF01458 (Uncharacterized protein family (UPF0051)) with a combined E-value of 5.9e-19. PF01458D 358-412","Residues 282-425 are 40% similar to a (PROTEIN ABC TRANSPORTER YCF24) protein domain (PD003219) which is seen in YNHC_ECOLI.Residues 11-309 are 22% similar to a (HYPOTHETICAL 50.0 KD PROTEIN) protein domain (PD131362) which is seen in Y076_SYNY3.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Mar 22 11:19:41 MST 2000","Mon Dec 22 10:57:05 2003","Wed Mar 14 14:43:40 MST 2001","Wed Mar 14 14:43:40 MST 2001","Wed Mar 14 14:43:40 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 111-419 of PG0235 show 21% similarity to PG0232, an ABC transporter subunit.","Wed Mar 14 14:43:40 MST 2001","Wed Mar 14 14:43:40 MST 2001","-51% similar to PDB:1VH4 Crystal structure of a stabilizer of iron transporter (E_value = 1.4E_29);","","","Residues 177 to 408 (E-value = 6.4e-40) place PG0235 in the UPF0051 family which is described as Uncharacterized protein family (UPF0051) (PF01458)","Wed Mar 14 14:43:40 MST 2001","34540104","","","","","","1","","","PG0259" "PG0236","294854","293955","900","ATGAAGACAAATATAGTTGATGTTTTTTGCATCATAGATGATTTCTCCAAGCTTTTTGATGAAGCAATCAAGAAAAAGACCCTCGAAGAGGCAGACAAAAAACGCAGGAATAGAAAGTTTAAGATGTCGGACAGTGAGGTCATGACCATCCTGATCCTGTTTCATCTGTCAAGATACCGAGATTTGAAAGCTTTTTATCTTCAATACATCACCTATTCTTGTCGATCCGAGTTCCCACATCTTGTCTCTTATAATCGCTTTGTGGAGCTGCAAAGCAGGGTGGGTTTCAAGCTGATAGCATTTCTCAATATGTGTTGTTTGGGTCAATGTACAGGCATCTCTTTCATCGATTCCACCCCACTGAAGGCTTGTCATATCAAACGAGCTCATGGGCATAGGACAATGAGGGGATGGGCTCAAAAAGGCAAAAGCACCATGGGTTGGTTTTATGGATTCAAACTGCATATTGTTATCAACGACAGGGGTGAAATCATCAACTATCAAATCACACCGGGCAATTGTGATGACAGAGAACCTCTGAAAGACGGAACATTCACCAAGAATCTTTTTGGCAAACTCATTGCCGATAGAGGCTACATTTCCCAAAACCTTTTTGACCGGCTCTTTGTCGATGACATCCACATGATAACCAAAATCAAAAAGAACATGAAGAACTCCCTGATGCATCTATATGACAAAGTTTTATTGAGAAAGAGAGCCCTGTTCGAAACGGTCAATGATATGCTCAAAAATGTCTGTCAGATAGAGCACACGAGACATCGCAGTGTCAACAATTTTGTCACCAACCTGATCTCCGGTATCATCGCTTACAACATCCTGCCTAAAAAGCCTGAACTCAATATTGAAATCATCAGAAACCCTAACTTTCCTATTTCCGCT","10.30","20.02","35093","MKTNIVDVFCIIDDFSKLFDEAIKKKTLEEADKKRRNRKFKMSDSEVMTILILFHLSRYRDLKAFYLQYITYSCRSEFPHLVSYNRFVELQSRVGFKLIAFLNMCCLGQCTGISFIDSTPLKACHIKRAHGHRTMRGWAQKGKSTMGWFYGFKLHIVINDRGEIINYQITPGNCDDREPLKDGTFTKNLFGKLIADRGYISQNLFDRLFVDDIHMITKIKKNMKNSLMHLYDKVLLRKRALFETVNDMLKNVCQIEHTRHRSVNNFVTNLISGIIAYNILPKKPELNIEIIRNPNFPISA","294854 293955","TIGR ID: PG0261","ISPg3 (IS195) transposase","Cytoplasm","PG0236 is equivalent to the previously sequenced gb|AAC26596.1, a predicted IS195 transposase. Residues 75-286 are 52% similar to a transposase sequence from Pasteurella multocida (Y15510). ","
InterPro
IPR002559
Domain
Transposase, IS4-like
PF01609\"[113-279]TTransposase_11
InterPro
IPR012337
Domain
Polynucleotidyl transferase, Ribonuclease H fold
SSF53098\"[193-280]TRNaseH_fold


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 212-286 are 98% similar to a (PROTEASE PUTATIVE TRANSPOSASE PLASMID) protein domain (PD190030) which is seen in O87010_PORGI.Residues 135-208 are identical to a (TRANSPOSASE PLASMID PROTEIN ELEMENT) protein domain (PD004652) which is seen in O87010_PORGI.Residues 75-133 are identical to a (PROTEASE PUTATIVE TRANSPOSASE PLASMID) protein domain (PD190029) which is seen in O87010_PORGI.Residues 1-74 are 97% similar to a (PUTATIVE PROTEASE PROTEASE) protein domain (PD203593) which is seen in O87010_PORGI.Residues 116-280 are 29% similar to a (HYPOTHETICAL 20.1 KD PROTEIN) protein domain (PD207068) which is seen in Q06444_BACST.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Feb 8 15:55:01 MST 2001","Thu Feb 8 16:02:05 MST 2001","Thu Feb 8 15:55:01 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","PG0236 is identical to PG0178, PG0718, PG0919 and PG1115, all predicted ISPg3 transposases. It is similar to fragments of PG1663, PG1328, PG1660, PG0273.","Thu Feb 8 15:59:44 MST 2001","","No significant hits to the PDB database (E-value < E-10).","","","Residues 113 to 279 (E-value = 2e-33) place PG0236 in the Transposase_11 family which is described as Transposase DDE domain (PF01609)","","34540105","","Lewis JP, Macrina FL, IS195, an insertion sequence-like element associated with protease genes in Porphyromonas gingivalis. Infect Immun 1998 Jul;66(7):3035-42, PubMed: 9632563.","Kehrenberg C, Werckenthin C, Schwarz S, Tn5706, a transposon-like element from Pasteurella multocida mediating tetracycline resistance. Antimicrob Agents Chemother 1998 Aug;42(8):2116-8, PubMed: 9687418.","Thu Feb 8 15:59:44 MST 2001","Thu Feb 8 15:59:44 MST 2001","1","","21","PG0261" "PG0237","295803","297092","1290","ATGAACTTTGTAGAAGAACTGCGTTGGCGGGGTATGATCCACGATATTATGCCCGGTACAGAGGAACACTTGAACAAGGGTATGACCTCGGCATACGTAGGCATTGACCCCACGGCTGATTCGTTGCACATCGGCCACCTCGTGGGTGTGATGATGCTGCGCCATTTCCAGCGTGCCGGCCATCGGCCCATCGCTCTTATAGGTGGTGCTACGGGAATGATAGGGGATCCTTCGATGAAGTCGGCCGAACGAGTTCTCTTGGACGAAGCCACTCTTCGGCATAATCAGGACTGCATCAAGCAGCAACTGGCCAAGTTCCTCGATTTCGATAGCGATGCACCCAATGCCGCAAAGCTCGTGAACAATTACGATTGGATGAAGGACTATTCTTTCCTCGGTTTCATTCGGGACATCGGCAAGCATATTACCGTCAATTATATGATGGCAAAGGATTCTGTGAAGAAACGCCTTAGTGCCGAGAGCAGCACCGGTCTGTCCTTTACGGAATTTTCCTACCAGCTTCTGCAAGGCTACGACTATCTCTATCTATATCGGAATGAGGGCTGCCGCTTGCAGATGGGCGGTTCGGATCAGTGGGGCAACATTACCACCGGAACGGAGCTTATCAGACGCAAGGACGGAGGAGAGGCCTTTGCCCTTACTTGTCCGCTTATTACCAAAGCCGACGGTGGCAAGTTTGGAAAAACGGAGAGCGGCAACATCTGGCTCGATCCTGCCAGAACTTCTCCTTATGCCTTCTACCAGTTCTGGCTCAATGTGAGCGATGCCGATGCCGAAAAGTATATCAAGATCTTCACGGGACTGAATCAGGACGAGATAGCAGAACTGGCAAGTCGTCAGGCCGAGGCTCCGCATCTACGCCCCTTGCAGAAGAGATTGGCAGAAGAGATCACCGTCATGGTACACAGTCGTGAAGCCTACGATGCTGCTGTCGAAGCCAGCGAGATCCTCTTTGGCAAGAGTACGACAGAGCAATTGCGCAAGCTTGACGAGGCCACTCTCCTCGATGTCTTTGCCGGTGTGCCGCAGTATCATGTGGAGCGCAGCAGGATAGCCACAGGAATTTCATTGGTCGATTTGCTGGCCGATGCTACCGATATATTCCCGTCCAAAGGTGAATTGCGCAAGACGGTGAAAGCCGGCGGAGTGAGCCTGAACAAAGAGAAAGTAGCCGATGCGGAACAAACGGTAGGAGAGGACGACCTCTTGTCCGACCGCTATCTGCTGGCGCAAAAAGGCAAGAAAAGCTATTACCTGATCATCGTGGAG","5.90","-7.46","48045","MNFVEELRWRGMIHDIMPGTEEHLNKGMTSAYVGIDPTADSLHIGHLVGVMMLRHFQRAGHRPIALIGGATGMIGDPSMKSAERVLLDEATLRHNQDCIKQQLAKFLDFDSDAPNAAKLVNNYDWMKDYSFLGFIRDIGKHITVNYMMAKDSVKKRLSAESSTGLSFTEFSYQLLQGYDYLYLYRNEGCRLQMGGSDQWGNITTGTELIRRKDGGEAFALTCPLITKADGGKFGKTESGNIWLDPARTSPYAFYQFWLNVSDADAEKYIKIFTGLNQDEIAELASRQAEAPHLRPLQKRLAEEITVMVHSREAYDAAVEASEILFGKSTTEQLRKLDEATLLDVFAGVPQYHVERSRIATGISLVDLLADATDIFPSKGELRKTVKAGGVSLNKEKVADAEQTVGEDDLLSDRYLLAQKGKKSYYLIIVE","295803 297092","TIGR ID: PG0263","tyrosyl-tRNA synthetase","Cytoplasm","This sequence is orthologous to CT062.Numerous significant hits in gapped BLAST to tyrosyl-tRNA synthetase; e.g. residues 1-427 are 49% similar to SYBSYF of Bacillus stearothermophilus, residues 1-427 are 49% similar to M13148 of Bacillus caldotenax, residues 2-427 are 46% similar to AF008220 of Bacillus subtilis.This sequence is similar to BT3230.","
InterPro
IPR001412
Family
Aminoacyl-tRNA synthetase, class I
PS00178\"[37-47]TAA_TRNA_LIGASE_I
InterPro
IPR002305
Domain
Aminoacyl-tRNA synthetase, class Ib
PF00579\"[24-326]TtRNA-synt_1b
InterPro
IPR002307
Family
Tyrosyl-tRNA synthetase, class Ib
PR01040\"[41-63]T\"[164-179]T\"[185-207]T\"[218-230]TTRNASYNTHTYR
PTHR11766\"[1-430]TTyr_tRNA-synt_1b
TIGR00234\"[1-430]TtyrS
InterPro
IPR002942
Domain
RNA-binding S4
SM00363\"[363-421]TS4
PS50889\"[362-430]TS4
InterPro
IPR014729
Domain
Rossmann-like alpha/beta/alpha sandwich fold
G3DSA:3.40.50.620\"[2-224]TRossmann-like_a/b/a_fold
noIPR
unintegrated
unintegrated
G3DSA:1.10.240.10\"[225-331]TG3DSA:1.10.240.10
G3DSA:3.10.290.10\"[346-429]TG3DSA:3.10.290.10
SSF52374\"[1-321]TSSF52374
SSF55174\"[323-430]TSSF55174


","BeTs to 16 clades of COG0162COG name: Tyrosyl-tRNA synthetaseFunctional Class: JThe phylogenetic pattern of COG0162 is amtkYqvCeBrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** PR01040 (Tyrosyl-tRNA synthetase signature) with a combined E-value of 2.7e-41. PR01040A 41-63 PR01040B 164-179 PR01040C 185-207 PR01040D 218-230","Residues 6-325 are 53% similar to a (SYNTHETASE AMINOACYL-TRNA TYROSYL-TRNA) protein domain (PD005447) which is seen in SYY_BACST.Residues 43-240 are 32% similar to a (SYNTHETASE AMINOACYL-TRNA LIGASE PROTEIN BIOSYNTHESIS) protein domain (PD001451) which is seen in SYY_HAEIN.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Mar 22 10:15:17 MST 2000","Mon Dec 22 10:08:35 2003","Mon May 21 17:36:12 MDT 2001","Mon May 21 17:36:12 MDT 2001","Mon May 21 17:36:12 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Jul 30 12:38:56 2008","-63% similar to PDB:2TS1 STRUCTURE OF TYROSYL-T/RNA SYNTHETASE REFINED AT 2.3 ANGSTROMS RESOLUTION. INTERACTION OF THE ENZYME WITH THE TYROSYL ADENYLATE INTERMEDIATE (E_value = 2.5E_105);-63% similar to PDB:3TS1 STRUCTURE OF TYROSYL-T/RNA SYNTHETASE REFINED AT 2.3 ANGSTROMS RESOLUTION. INTERACTION OF THE ENZYME WITH THE TYROSYL ADENYLATE INTERMEDIATE (E_value = 2.5E_105);-62% similar to PDB:1JII Crystal structure of S. aureus TyrRS in complex with SB-219383 (E_value = 2.7E_99);-62% similar to PDB:1JIJ Crystal structure of S. aureus TyrRS in complex with SB-239629 (E_value = 2.7E_99);-62% similar to PDB:1JIK Crystal structure of S. aureus TyrRS in complex with SB-243545 (E_value = 2.7E_99);","","","Residues 24 to 326 (E-value = 2.8e-107) place PG0237 in the tRNA-synt_1b family which is described as tRNA synthetases class I (W and Y) (PF00579)","Mon May 21 17:36:12 MDT 2001","34540106","","","","","","1","","21","PG0263" "PG0238","297115","298179","1065","ATGAAACTATCCATCGTTATTGTCAATTATCGTGTTCCGTATTTCTTGGAACAGTGCCTTCTCTCCGTGCGAAAGTCTGCCCAAGGGATTGATACGGAAGTGTGGGTCGTAGACAATAATTCGGGGGATGGTTCGGTAGAATATCTTCAAAGTCGTTTCCCCGAAGTTCATTTTGTAGCTAACGAGGAGAATGTAGGTTTCTCTCGCGCCAACAATCAGGCTATCCGTCTCAGTAAGGGGCAATACGTACTCTTGCTCAATCCCGATACCCTTATCGGAGAGAGTACGCTGCGTACAGTGGTGGACTTTATGGATTCGAAGCCTAATGCAGGCGGACTGGGCGTAAAAATGCTCAATGGTCATGGCCGCTTTTTGCCGGAGAGTAAGCGAGGGTTTCCTTCTCCATGGGTGTCTTTCTGTAAGTTGTCCGGGCTTAACCGGCTCTTTCCTCATTCGTCTCGTTTCAATCGCTATCACCTCAGTTATCTCAGCCGTGACGAGGTGCACAAAGTAGAGGTACTGTCCGGTGCTTTTATGCTGATGCGTCGGGAGGCATTGGATAAGGTCGGGTTGCTCGACGAGCGTTTTTTTATGTATGGTGAGGATATCGACCTCTCTTATCGCTTGATATTGGGCGGATACGACAACTACTACTATCCGACTCCTATTCTTCATTACAAAGGAGAAAGTTCGTCGGTCTCCGATGTTAAATATCTTCGTTCGTTCTATGGGGCGATGGGTTTGTTTTTCGATAAATACTATAGAAACAGGATGAATCCACTGCTTCATGGACTGATCAATGTCGTCATCAAAGCACGTACAGCTCTTGCCTTGATGCTTCGCAGTCTGAGGAAGGTTCCGGCGGCAGAGAAACCTGCCAAAATATTCTATTGGCATCCTTCTGAGGGAGAGGCTGCTATATCTGCCTATCACGACCGCAGCCATATCCTGATCAATACCGATGAGGTGACTTGTGATCGCCTGCTTCTGACTATGGAGAAACTGGCTGATAGGAAGCATACTTTCCATCTGACGAATGACACCACGAAAAGGGTGATCTCACCT","9.80","9.76","40626","MKLSIVIVNYRVPYFLEQCLLSVRKSAQGIDTEVWVVDNNSGDGSVEYLQSRFPEVHFVANEENVGFSRANNQAIRLSKGQYVLLLNPDTLIGESTLRTVVDFMDSKPNAGGLGVKMLNGHGRFLPESKRGFPSPWVSFCKLSGLNRLFPHSSRFNRYHLSYLSRDEVHKVEVLSGAFMLMRREALDKVGLLDERFFMYGEDIDLSYRLILGGYDNYYYPTPILHYKGESSSVSDVKYLRSFYGAMGLFFDKYYRNRMNPLLHGLINVVIKARTALALMLRSLRKVPAAEKPAKIFYWHPSEGEAAISAYHDRSHILINTDEVTCDRLLLTMEKLADRKHTFHLTNDTTKRVISP","297115 298179","TIGR ID: PG0264","glycosyltransferase","Cytoplasm, Inner membrane","Residues 16-243 of PG0238 are 27% similar to a previously sequenced P.gingivalis protein in Genbank, AAC44337.Numerous significant hits to transferase proteins in gapped BLAST; e.g. residues 3-273 are 29% similar to embCAB65190.1 putative glycosyl transferase of Legionella pneumophila, residues 3-261 are 31% similar to gbAAF04376.1AF187551_1 dTDP-Rha:a-D-GlcNAc-diphosphoryl polyprenol, a-3-L-rhamnosyl transferase of Mycobacterium smegmatis, residues 3-295 are 30% similar to embCAC30261.1 putative dTDP-rhamnosyl transferase of Mycobacterium leprae.","
InterPro
IPR001173
Domain
Glycosyl transferase, family 2
PF00535\"[4-190]TGlycos_transf_2
noIPR
unintegrated
unintegrated
G3DSA:3.90.550.10\"[1-234]TG3DSA:3.90.550.10
PTHR22916\"[9-156]T\"[182-281]TPTHR22916
SSF53448\"[2-234]TSSF53448


","BeTs to 6 clades of COG1216COG name: Predicted glycosyltransferasesFunctional Class: RThe phylogenetic pattern of COG1216 is A-Tk----e-R----------Number of proteins in this genome belonging to this COG is 3","No significant hit to the Blocks database.","Residues 16-125 are 29% similar to a (TRANSFERASE PUTATIVE RHAMNOSYL GLYCOSYL) protein domain (PD016086) which is seen in O69127_BURPS.Residues 3-126 are 31% similar to a (GLYCOSYL TRANSFERASE TRANSFERASE) protein domain (PD097313) which is seen in P74817_BBBBB.Residues 174-249 are 38% similar to a (TRANSFERASE PROTEIN PUTATIVE GLYCOSYL) protein domain (PD002440) which is seen in P96870_MYCTU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Apr 26 13:15:24 MDT 2001","Tue Jul 13 14:35:17 2004","Thu Mar 8 12:36:58 MST 2001","","Thu Mar 8 12:36:58 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 36-253 are 32% similar to PG1022, a probable rhamnosyl transferase. Similarities are also seen to PG1944, a predicted glycosyl tranferase.","Thu Mar 8 12:36:58 MST 2001","Tue Jul 13 14:35:17 2004","No significant hits to the PDB database (E-value < E-10).","","","Residues 4 to 190 (E-value = 1.7e-29) place PG0238 in the Glycos_transf_2 family which is described as Glycosyl transferase (PF00535)","Thu Mar 8 12:36:58 MST 2001","34540107","","","","","","1","","21","PG0264" "PG0238.1","298334","298594","261","TTGAATTGCGAGGCAATCTGTATCAAGTCAAAAAGAGACCTTTGCAAAATCAAGAAGTATCTTTTCGGTATCGTTTTCACCCGTAGAGCGTGTCGCACAAGTCATAGAGGAGCTGAGGTATTCATACCTATAACGACACAGAAAAACAGTCAATTGACAATGAAATCTCCCGGAAAATGCCGTGCGACAGTCTCATCTATCGGTTTAACAGCTCGCACGGAACCTCCCACTCCCCGAACCTGCCATCCGGCAGAGAGCAGA","","","9690","LNCEAICIKSKRDLCKIKKYLFGIVFTRRACRTSHRGAEVFIPITTQKNSQLTMKSPGKCRATVSSIGLTARTEPPTPRTCHPAESR","","NO TIGR ID corresponds to this gene.","hypothetical protein","Periplasm, Cytoplasm","No hit found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","21","" "PG0239","299240","301030","1791","ATGTCCATCCTGCAAAAATTGGAGAATAGTGCTGCAGCAGCAGTGAAAGCCCTTTACGGAACAGATCCTATGGAAGGGCAGATTCAATTACAAAAGACCAAGCGCGAATTCAAAGGACACCTGACTTTGGTGGTTTTCCCTTTTGTCAAGATGTCTCGAAAAAGTCCCGAAGCGACTGCCACGGAAATAGGAGAATGGTTGCTTGCAAACGAGTCGGCAGTATCTGCCATCGAAGTGGTAAAGGGCTTTCTCAATCTGACCATTGCTCCGAGGGTATGGTTGGAGCTGCTGAACGAGATCCGAGCGGATATCAACTTCGGACATAAGGTCGCTACAGAGGATAGCCCGCTGGTAATGGTGGAGTATTCTTCTCCGAATACCAATAAGCCGTTACACCTTGGACACGTACGTAACAACCTATTGGGTTATAGTCTTTCCGAGATCATGAAAGCCAATGGCTATCGTGTGGTGAAGACTAATATCGTAAATGACCGAGGCATTCATATCTGTAAGTCCATGCTCGCTTGGCAAAAGTGGGGAGATGGTGTGACGCCGGAGAAGGCCGGTAAGAAAGGCGATCATCTGATCGGAGACTTCTATGTCCTTTTCGATAAGCACTACAAAGCCGAACTCAATTCCCTTATGGCTGAAGGTAAGAGCAAAGAAGAAGCCGAAGCCGCAAGCACCCTCATGGCTGAAGCTCGTGAGATGCTACGATTGTGGGAGGCAGGAGACGAAAAGGTCGTCGATCTCTGGCGTACTATGAATCAGTGGGTATACGACGGATTCGATGCCACATACAAGATGATGGGTGTAGACTTCGACAAGATATACTATGAATCCGAGACCTATCTCGTCGGCAAGGAAGAAGTGCTGAGGGGTTTGGAGGAAGGCTTGTTTGTCAAGCATTCCGATGGTTCTGTATGGGCGGATCTGACAAAGGATGGCTTGGATGAAAAATTGCTTTTGCGTGCCGATGGCACATCGGTGTACATGACGCAGGATATAGGTACGGCCAAGATGCGTTTCAATGACTATCCCATCAACCGCATGATCTATGTAGTCGGCAACGAGCAGAACTATCACTTCCAAGTCCTGTCCATCCTGTTGGATCGTCTTGGATTTGAGTTTGGTAAAGGGTTGGTACACTTCAGCTACGGTATGGTGGAGTTACCCGAAGGGAAGATGAAAAGTCGCGAAGGTACAGTCGTTGATGCAGATGATCTGATGGATGAAATGATCAGAACGGCTGCCGAGATAGCCGCCGAAGCCGGCAAGGCGGCAGAAATGGATGAAGAGGAATCCCGTGAGGTTGCACGCATCGTAGGCTTGGGGTCTCTCAAGTATTTCATCCTCAAAGTAGATCCGCGTAAGAACATGACTTTCAACCCGAAAGAATCCATTGATTTCAATGGTAATACGGGTTCTTTTGTCCAGTACACTTATGCACGTATTCGTTCGCTGATGCGGCGAGCAGAGGCTGCGGGCTATGACATTCCATCTCAGCTGCCTACGGATCTTCCGCTGAGCGAGAAGGAGGAGGCTCTGATTCAAAAAGTGAGCGAATATGCTGAGGTTGTCAGTGAAGCCGGTCACTCTTATAGCCCCGCTCTTATAGCAAACTATATATACGATTTGGTGAAGGAGTACAACCAGTTCTATCATGATTTTTCGGTGCTCAAGGAGGAAGATGAGCGTATCCGTGCATTCCGTCTCGCTCTTTCCGAGGTCGTAGCTCTTACGATGCGGAAAGGTTTCGCTCTCCTCGGCATCGAAATGCCCGAAAGGATG","5.10","-18.07","67485","MSILQKLENSAAAAVKALYGTDPMEGQIQLQKTKREFKGHLTLVVFPFVKMSRKSPEATATEIGEWLLANESAVSAIEVVKGFLNLTIAPRVWLELLNEIRADINFGHKVATEDSPLVMVEYSSPNTNKPLHLGHVRNNLLGYSLSEIMKANGYRVVKTNIVNDRGIHICKSMLAWQKWGDGVTPEKAGKKGDHLIGDFYVLFDKHYKAELNSLMAEGKSKEEAEAASTLMAEAREMLRLWEAGDEKVVDLWRTMNQWVYDGFDATYKMMGVDFDKIYYESETYLVGKEEVLRGLEEGLFVKHSDGSVWADLTKDGLDEKLLLRADGTSVYMTQDIGTAKMRFNDYPINRMIYVVGNEQNYHFQVLSILLDRLGFEFGKGLVHFSYGMVELPEGKMKSREGTVVDADDLMDEMIRTAAEIAAEAGKAAEMDEEESREVARIVGLGSLKYFILKVDPRKNMTFNPKESIDFNGNTGSFVQYTYARIRSLMRRAEAAGYDIPSQLPTDLPLSEKEEALIQKVSEYAEVVSEAGHSYSPALIANYIYDLVKEYNQFYHDFSVLKEEDERIRAFRLALSEVVALTMRKGFALLGIEMPERM","299240 301030","TIGR ID: PG0267","arginyl-tRNA synthetase (arginine-tRNA ligase)","Cytoplasm","Numerous significant hits to arginyl-tRNA synthetase (arginine--tRNA ligase) in gapped BLAST; e.g. residues 9-597 are 39% similar to gb|AAC65797.1| arginyl-tRNA synthetase of Treponema pallidum, residues 28-591 are 35% similar to gb|AAC66956.1| arginyl-tRNA synthetase of Borrelia burgdorferi, residues 30-597 are 28% similar to dbj|BAB04553.1| arginine-tRNA ligase of Bacillus halodurans.This sequence is similar to BT2829.","
InterPro
IPR001278
Family
Arginyl-tRNA synthetase, class Ic
PR01038\"[117-132]T\"[132-148]T\"[156-169]T\"[321-342]TTRNASYNTHARG
PTHR11956\"[25-206]T\"[224-597]TArg_tRNA-synt_1c
PF00750\"[95-464]TtRNA-synt_1d
TIGR00456\"[3-597]TargS
InterPro
IPR001412
Family
Aminoacyl-tRNA synthetase, class I
PS00178\"[125-136]TAA_TRNA_LIGASE_I
InterPro
IPR005148
Domain
Arginyl tRNA synthetase, N-terminal
PF03485\"[1-88]TArg_tRNA_synt_N
InterPro
IPR008909
Domain
DALR anticodon binding
PF05746\"[478-597]TDALR_1
InterPro
IPR009080
Domain
Aminoacyl-tRNA synthetase, class 1a, anticodon-binding
SSF47323\"[473-597]TtRNAsyn_1a_bind
InterPro
IPR014729
Domain
Rossmann-like alpha/beta/alpha sandwich fold
G3DSA:3.40.50.620\"[109-471]TRossmann-like_a/b/a_fold
noIPR
unintegrated
unintegrated
G3DSA:1.10.730.10\"[472-597]TG3DSA:1.10.730.10
G3DSA:3.30.1360.70\"[6-106]TG3DSA:3.30.1360.70
SSF52374\"[109-472]TSSF52374
SSF55190\"[6-102]TSSF55190


","BeTs to 17 clades of COG0018COG name: Arginyl-tRNA synthetaseFunctional Class: JThe phylogenetic pattern of COG0018 is amtkYqvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 126-375 are 49% similar to a (SYNTHETASE ARGINYL-TRNA AMINOACYL-TRNA) protein domain (PD002803) which is seen in SYR_TREPA.Residues 381-470 are 43% similar to a (SYNTHETASE ARGINYL-TRNA AMINOACYL-TRNA) protein domain (PD186188) which is seen in SYR_TREPA.Residues 472-597 are 36% similar to a (SYNTHETASE ARGINYL-TRNA AMINOACYL-TRNA) protein domain (PD186118) which is seen in O59147_PYRHO.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Mar 27 10:31:21 MST 2001","Fri Dec 19 10:18:09 2003","Tue Mar 27 10:31:21 MST 2001","","Tue Mar 27 10:31:21 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 27 10:31:21 MST 2001","-49% similar to PDB:1BS2 YEAST ARGINYL-TRNA SYNTHETASE (E_value = 5.3E_51);-49% similar to PDB:1F7U CRYSTAL STRUCTURE OF THE ARGINYL-TRNA SYNTHETASE COMPLEXED WITH THE TRNA(ARG) AND L-ARG (E_value = 5.3E_51);-49% similar to PDB:1F7V CRYSTAL STRUCTURE OF YEAST ARGINYL-TRNA SYNTHETASE COMPLEXED WITH THE TRNAARG (E_value = 5.3E_51);-43% similar to PDB:1IQ0 THERMUS THERMOPHILUS ARGINYL-TRNA SYNTHETASE (E_value = 1.1E_37);-56% similar to PDB:1H3N LEUCYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH A SULPHAMOYL ANALOGUE OF LEUCYL-ADENYLATE (E_value = 1.1E_37);","","","Residues 1 to 88 (E-value = 1.4e-07) place PG0239 in the Arg_tRNA_synt_N family which is described as Arginyl tRNA synthetase N terminal domain (PF03485)Residues 95 to 464 (E-value = 2.8e-35) place PG0239 in the tRNA-synt_1d family which is described as tRNA synthetases class I (R) (PF00750)Residues 478 to 597 (E-value = 6.6e-43) place PG0239 in the tRNA-synt_1d_C family which is described as DALR anticodon binding domain (PF05746)","Fri Dec 19 10:18:09 2003","34540109","","","","","","1","","21","PG0267" "PG0240","301038","302120","1083","ATGGATGTAGCAGCATTGGTGTCGGGAGGAGTGGACAGCTCCGTAGTCGTTCATCGTCTTTGCGAGGAAGGATATAAGCCTGCTATCTTCTACATCCGGATAGGAATGGAAGATAAGGATGGTTATATAGATTGTCCGGCAGAAGAGGATATAGAACTGACGACACTGATTGCACGTCGCTATGGATGCCCCTTCGAGGTCGTCGATCTCCACAAAGAGTATTGGGAGCGTGTGGTCAGCTATACGGTGGAAACTGTTCGCCGGGGATTGACGCCCAATCCCGATATGATGTGCAACAAGCTGATCAAATTCGGTTGTTTCGAAGAGCGTTGGGGCTACCAATTCGATCGAATCGCCACAGGACATTATGCCACAACCGATCTCCTGAATGGAAAGACTTATCTGTCTACAGCTAAAGATCCTGTCAAAGACCAAACGGATTTTTTGGCGCAGATCAACTTCGCTCAAATATCCAAACTCATGTTCCCCATTGGCCATCTATTGAAGTCCGAAGTACGTGCTATCGCCAATGCTGCCGGACTGCCGAGTGCCAAAAGAAAAGACAGTCAGGGTATTTGCTTTCTTGGAAAGATAGACTACAATGACTTCATAGAACGTTATTTGGGAAAGAAGGAAGGCCGGATAATCGAACTGGAAACAGGGAAAGTAATAGGCCGACATCAGGGTTACTGGTTTCATACGATAGGGCAACGCAAAGGGTTGGGACTCAGTGGAGGGCCTTGGTTCGTAGTCAAGAAAGATATCAAACGTAATATCATCCTCGTTAGCAGAGGGTACGACCCTGATGCCCAATATGGCAAGACGATAGAGATGGAGACTTTCGACTTCATCACTGAGGATGCTTATGAAGCAGGGTATTGGAATCGGGAGGATGCTACACCCGTGACATTCAAGATTCGGCACACACCCGAATTCACGCGCGGATTGCTTTATAAGGGCGAAAAAGGTTATCGCCTTGAGAGCGAAGAGCGAATCCAGGGTATTGCCCCCGGGCAATATTGCGTGATCTACGATGAAGATCACCATCTTTGCTACGGAAGCGGTATGATCACGAAAGGGAGA","6.60","-2.18","41150","MDVAALVSGGVDSSVVVHRLCEEGYKPAIFYIRIGMEDKDGYIDCPAEEDIELTTLIARRYGCPFEVVDLHKEYWERVVSYTVETVRRGLTPNPDMMCNKLIKFGCFEERWGYQFDRIATGHYATTDLLNGKTYLSTAKDPVKDQTDFLAQINFAQISKLMFPIGHLLKSEVRAIANAAGLPSAKRKDSQGICFLGKIDYNDFIERYLGKKEGRIIELETGKVIGRHQGYWFHTIGQRKGLGLSGGPWFVVKKDIKRNIILVSRGYDPDAQYGKTIEMETFDFITEDAYEAGYWNREDATPVTFKIRHTPEFTRGLLYKGEKGYRLESEERIQGIAPGQYCVIYDEDHHLCYGSGMITKGR","301038 302120","TIGR ID: PG0268","probable tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase, TrmU.","Cytoplasm","This sequence is orthologous to CT287 as well as to BT0155.Numerous significant hits in gapped BLAST to tRNA methyltransferases; e.g. residues 1-359 are 43% similar to probable tRNA methyltransferase AE001169 of Borrelia burgdorferi, residues 7-357 are 39% similar to tRNA methyltransferase AP001511 of Bacillus halodurans, residues 7-357 are 37% similar to tRNA methyltransferase AE004691 of Pseudomonas aeruginosa.","
InterPro
IPR004506
Family
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
PTHR11933\"[16-357]TTrmU_mtfrase
PF03054\"[1-357]TtRNA_Me_trans
TIGR00420\"[1-357]TtrmU
InterPro
IPR014729
Domain
Rossmann-like alpha/beta/alpha sandwich fold
G3DSA:3.40.50.620\"[2-188]TRossmann-like_a/b/a_fold
noIPR
unintegrated
unintegrated
SSF52402\"[3-243]TSSF52402


","BeTs to 12 clades of COG0482COG name: Predicted ATPase of the PP-familyFunctional Class: RThe phylogenetic pattern of COG0482 is ----yQvcebrhUJgpo-inxNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 94-357 are 43% similar to a (TRNA) protein domain (PD005022) which is seen in O51625_BORBU.Residues 1-92 are 32% similar to a (PROTEIN SYNTHETASE LIGASE BIOSYNTHESIS PROBABLE) protein domain (PD000352) which is seen in O51625_BORBU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Mar 22 12:54:48 MST 2000","Thu Nov 20 20:59:32 2003","Wed Jun 6 09:28:46 MDT 2001","","Wed Jun 6 09:28:46 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Jul 23 13:40:39 2008","-55% similar to PDB:2HMA The Crystal Structure of tRNA (5-Methylaminomethyl-2-Thiouridylate)-Methyltransferase TrmU from Streptococcus pneumoniae (E_value = 1.5E_55);-52% similar to PDB:2DER Cocrystal structure of an RNA sulfuration enzyme MnmA and tRNA-Glu in the initial tRNA binding state (E_value = 7.9E_49);-52% similar to PDB:2DET Cocrystal structure of an RNA sulfuration enzyme MnmA and tRNA-Glu in the pre-reaction state (E_value = 7.9E_49);-52% similar to PDB:2DEU Cocrystal structure of an RNA sulfuration enzyme MnmA and tRNA-Glu in the adenylated intermediate state (E_value = 7.9E_49);-44% similar to PDB:1ABR CRYSTAL STRUCTURE OF ABRIN-A (E_value = 7.9E_49);","","","Residues 1 to 357 (E-value = 6.1e-128) place PG0240 in the tRNA_Me_trans family which is described as tRNA methyl transferase (PF03054)","Wed Jun 6 09:28:46 MDT 2001","34540110","","","","","","1","","21","PG0268" "PG0241","302168","302929","762","ATGAAAATTATCAGTTATAATGTCAATGGCCTTCGGGCTGCGATGAAGAAAGATCTGATCGGTTGGCTTCGAGAAGAGAATCCTGATGTGCTGTGCCTGCAGGAAACTAAGATGCAGAATGACCAATTCGAAAAAGAAGAATTTGAAGCACTGGGCTACCGCTCGTATCTTTTTTCGGCTCAAAAGAAAGGATATAGCGGTGTGGCTATCATCACAAAGCATCAGCCTGATCATATAGAATATGGCATGGGTATGGAAGAATACGATGCGGAAGGTCGTTTTATCCGTGCCGATTTCGGCGATCTTTCTATCGTAAGCGTTTATCATCCATCCGGGACGAGTGGCGATGAGCGTCAGGCCTTCAAGATGGTTTGGCTGGAGCACTTCCAATCTTATGTCAATGAACTCCGCAAGAGTCGCCCTAACTTGATCCTGTGCGGTGACTACAATATCTGCCACGAACCTATCGACATCCATGATCCCATCCGCAATGCCAAAAACAGTGGCTTCCTTCCGGAAGAACGTGAGTGGATGAGTCGTTTCTTAGCGGACGGATATGTCGATACTTTTCGTCATACCCATCCGGAGTTAGTCCTATACTCTTGGTGGAGCTATCGCTTCCAAGCACGCAGTCGCAATAAGGGCTGGCGCATAGATTACTGTATGGTGACAAACAATCTGGCCGACCGAATAAAAGGTGCCGACATATTGAATGAAGCCGTTCACTCGGATCACTGTCCGATAGTCCTGGAAATAGCTGAA","5.80","-6.81","29654","MKIISYNVNGLRAAMKKDLIGWLREENPDVLCLQETKMQNDQFEKEEFEALGYRSYLFSAQKKGYSGVAIITKHQPDHIEYGMGMEEYDAEGRFIRADFGDLSIVSVYHPSGTSGDERQAFKMVWLEHFQSYVNELRKSRPNLILCGDYNICHEPIDIHDPIRNAKNSGFLPEEREWMSRFLADGYVDTFRHTHPELVLYSWWSYRFQARSRNKGWRIDYCMVTNNLADRIKGADILNEAVHSDHCPIVLEIAE","302087 302929","TIGR ID: PG0269","exodeoxyribonuclease III","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 1-252 are 46% similar to gb|AAB84718.1| exodeoxyribonuclease of Methanothermobacter thermautotrophicus, residues 1-252 are 47% similar to emb|CAB16125.1| 3'-exo-deoxyribonuclease of Bacillus subtilis, residues 2-254 are 44% similar to gb|AAC65116.1| exodeoxyribonuclease of Treponema pallidum.This sequence is similar to BT0630.","
InterPro
IPR000097
Family
AP endonuclease, family 1
TIGR00195\"[1-252]TexoDNase_III
PS00726\"[28-37]TAP_NUCLEASE_F1_1
PS00727\"[188-203]?AP_NUCLEASE_F1_2
InterPro
IPR004808
Family
Exodeoxyribonuclease III xth
PTHR22748\"[53-252]TExoIII_xth
TIGR00633\"[1-253]Txth
InterPro
IPR005135
Domain
Endonuclease/exonuclease/phosphatase
PF03372\"[1-252]TExo_endo_phos
noIPR
unintegrated
unintegrated
G3DSA:3.60.10.10\"[1-252]TG3DSA:3.60.10.10
SSF56219\"[1-252]TSSF56219


","BeTs to 11 clades of COG0708COG name: Exonuclease IIIFunctional Class: LThe phylogenetic pattern of COG0708 is a-t-y--cebrhuj--ol--XNumber of proteins in this genome belonging to this COG is 1","***** IPB000097 (AP endonucleases family 1) with a combined E-value of 1.9e-71. IPB000097A 1-13 IPB000097B 28-37 IPB000097C 62-102 IPB000097D 141-175 IPB000097E 200-224 IPB000097F 236-248","Residues 1-252 are 46% similar to a (PROTEIN ENDONUCLEASE EXODEOXYRIBONUCLEASE) protein domain (PD002469) which is seen in O26314_METTH.Residues 1-252 are 23% similar to a (RNA-DIRECTED DNA POLYMERASE TRANSCRIPTASE) protein domain (PD009940) which is seen in Q07995_CHITH.","","Wed Jun 13 16:27:13 MDT 2001","","Wed Jun 13 16:27:13 MDT 2001","Wed Jun 13 16:27:13 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Jun 13 16:27:13 MDT 2001","Wed Jun 13 16:27:13 MDT 2001","","","Tue Dec 2 17:25:00 2003","Tue Dec 2 17:25:00 2003","Thu Mar 8 13:20:03 MST 2001","Tue Dec 2 17:25:00 2003","Tue Dec 2 17:25:00 2003","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 8 13:20:03 MST 2001","-65% similar to PDB:2JC5 APURINIC APYRIMIDINIC (AP) ENDONUCLEASE (NAPE) FROM NEISSERIA MENINGITIDIS (E_value = 1.6E_60);-63% similar to PDB:1BIX THE CRYSTAL STRUCTURE OF THE HUMAN DNA REPAIR ENDONUCLEASE HAP1 SUGGESTS THE RECOGNITION OF EXTRA-HELICAL DEOXYRIBOSE AT DNA ABASIC SITES (E_value = 5.0E_54);-63% similar to PDB:1DE8 HUMAN APURINIC/APYRIMIDINIC ENDONUCLEASE-1 (APE1) BOUND TO ABASIC DNA (E_value = 5.0E_54);-63% similar to PDB:1DE9 HUMAN APE1 ENDONUCLEASE WITH BOUND ABASIC DNA AND MN2+ ION (E_value = 5.0E_54);-63% similar to PDB:1DEW CRYSTAL STRUCTURE OF HUMAN APE1 BOUND TO ABASIC DNA (E_value = 5.0E_54);","","","Residues 1 to 252 (E-value = 1.7e-50) place PG0241 in the Exo_endo_phos family which is described as Endonuclease/Exonuclease/phosphatase family (PF03372)","Thu Mar 8 13:20:03 MST 2001","34540111","","","","","","1","","21","PG0269" "PG0242","303005","303928","924","ATGAATATACAGCAGCTCGAATACATAGCCGCATTGGATAAGTTCCGACACTTTGCCAAAGCTGCAGATTACTGCAATGTGTCGCAGCCTACGCTTAGTACCATGATTCTCAAATTGGAGGAAGAACTTGGAGCTAAGCTTTTCGACAGGAGCCGACAGCCAATAGAGCCGACATCGATAGGCGCGCTTGTCGTTTCGCAAGCCAAGCAAATACTATACGATCTTAACAGTATCACACGGATAATCGAGGAAGAGCAGCAATCGCTCACTGGCAGGCTGAATATAGCCGTTTTGCCAACCATCGCACCCTATCTCCTGCCTCGTGTCTTCCCAATCTGGAAAAAAGAGCTGGCAGGATTGGAAATACATGTCAGTGAAATGCAGACATCCCGTTGTCTGGCATCCCTTCTGTCCGGAGAAATAGATATGGCTATCATTGCTTCCAAAGCCGAGACCGAAGGTCTTGAAGACGACTTGCTCTATTATGAGGAGTTTCTGGGGTATGTATCGCGCTGTGAGCCGCTATTCGAACAAGATGTAATTCGCACTACCGAGGTCAACCCACATCGTCTCTGGCTGTTGGACGAAGGTCATTGCTTCAGAGATCAGCTCGTTCGTTTTTGTCAGATGAAAGGGTTGCATGAACGTCAGACGGCATATTCCGGCGGTAGCATGGAAGCATTCATGCGATTGGTGGAGAGCGGTCAGGGAATTACGTTTATTCCACAACTGACCGTAGAGCAATTATCACCTTCGCAGAAAGAGCTGGTGCGTCCGTTTGGTATGCCTCGTCCGGTAAGGGAAGTACGTTTGGCCGTGCGTCAGGATTATTCTCGCCGGAAACTTCGTGAACAGTTGATTGGCTTGCTGCGTTCGGCCGTCCCATCGGATATGCACAAGTTGCAGACAGGGCAGCATTTGGCT","6.20","-3.53","35132","MNIQQLEYIAALDKFRHFAKAADYCNVSQPTLSTMILKLEEELGAKLFDRSRQPIEPTSIGALVVSQAKQILYDLNSITRIIEEEQQSLTGRLNIAVLPTIAPYLLPRVFPIWKKELAGLEIHVSEMQTSRCLASLLSGEIDMAIIASKAETEGLEDDLLYYEEFLGYVSRCEPLFEQDVIRTTEVNPHRLWLLDEGHCFRDQLVRFCQMKGLHERQTAYSGGSMEAFMRLVESGQGITFIPQLTVEQLSPSQKELVRPFGMPRPVREVRLAVRQDYSRRKLREQLIGLLRSAVPSDMHKLQTGQHLA","303005 303928","TIGR ID: PG0270","redox-sensitive transcriptional activator (oxidative stress transcriptional regulator) (hydrogen peroxide-inducible genes activator)","Cytoplasm","Numerous significant hits to redox-sensitive transcriptional activator (oxidative stress transcriptional regulator) (hydrogen peroxide-inducible genes activator) in gapped BLAST; e.g. residues 1-307 are 56% similar to gbAAG02619.1AF206033_2 redox-sensitive transcriptional activator of Bacteroides fragilis, residues 1-301 are 34% similar to spQ9X725OXYR_ERWCH hydrogen peroxide-inducible genes activator of Pectobacterium chrysanthemi, residues 1-301 are 33% similar to gbAAC72241.1 oxidative stress transcriptional regulator of Pectobacterium carotovorum.","
InterPro
IPR000847
Domain
Bacterial regulatory protein, LysR
PR00039\"[18-29]T\"[29-39]T\"[39-50]THTHLYSR
PF00126\"[3-62]THTH_1
PS50931\"[1-58]THTH_LYSR
InterPro
IPR005119
Domain
LysR, substrate-binding
PF03466\"[86-295]TLysR_substrate
noIPR
unintegrated
unintegrated
G3DSA:3.40.190.10\"[87-201]TG3DSA:3.40.190.10
SSF46785\"[1-105]TSSF46785
SSF53850\"[87-295]TSSF53850


","BeTs to 7 clades of COG0583COG name: Transcriptional regulators, LysR familyFunctional Class: KThe phylogenetic pattern of COG0583 is aMt--Q-CEBRH---------Number of proteins in this genome belonging to this COG is 1","***** IPB000847 (Bacterial regulatory protein, LysR family) with a combined E-value of 1.1e-15. IPB000847 17-61","Residues 87-152 are 40% similar to a (TRANSCRIPTION REGULATION DNA-BINDING TRANSCRIPTIONAL) protein domain (PD000474) which is seen in OXYR_HAEIN.Residues 190-281 are 36% similar to a (TRANSCRIPTION REGULATION DNA-BINDING TRANSCRIPTIONAL) protein domain (PD003845) which is seen in Q9ZAR5_BRUAB.Residues 1-75 are 50% similar to a (TRANSCRIPTION REGULATION DNA-BINDING PROTEIN) protein domain (PD000161) which is seen in OXYR_ECOLI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Mar 8 16:00:34 MST 2001","Tue Jul 1 19:30:19 2008","Thu Mar 8 13:22:19 MST 2001","Thu Mar 8 13:22:19 MST 2001","Thu Mar 8 13:22:19 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Jul 1 19:30:19 2008","-47% similar to PDB:1I6A CRYSTAL STUCTURE OF THE OXIDIZED FORM OF OXYR (E_value = 7.9E_23);-47% similar to PDB:1I69 CRYSTAL STRUCTURE OF THE REDUCED FORM OF OXYR (E_value = 1.1E_21);","","","Residues 3 to 62 (E-value = 2.6e-17) place PG0242 in the HTH_1 family which is described as Bacterial regulatory helix-turn-helix protein, lysR family (PF00126)Residues 86 to 295 (E-value = 1.4e-37) place PG0242 in the LysR_substrate family which is described as LysR substrate binding domain (PF03466)","Tue Jul 1 19:30:19 2008","34540112","","Meuric V, Gracieux P, Tamanai-Shacoori Z, Perez-Chaparro J, Bonnaure-Mallet M., Expression patterns of genes induced by oxidative stress in Porphyromonas gingivalis. Oral Microbiol Immunol. 2008 Aug;23(4):308-14. PMID: 18582330Wu J, Lin X, Xie H.OxyR is involved in coordinate regulation of expression of fimA and sod genes in Porphyromonas gingivalis.FEMS Microbiol Lett. 2008 May;282(2):188-95. Epub 2008 Mar 18.PMID: 18355277Ohara N, Kikuchi Y, Shoji M, Naito M, Nakayama K.,Superoxide dismutase-encoding gene of the obligate anaerobe Porphyromonas gingivalis is regulated by the redox-sensing transcription activator OxyR. Microbiology. 2006 Apr;152(Pt 4):955-66.PMID: 16549660Diaz PI, Slakeski N, Reynolds EC, Morona R, Rogers AH, Kolenbrander PE., Role of oxyR in the oral anaerobe Porphyromonas gingivalis., J Bacteriol. 2006 Apr;188(7):2454-62.PMID: 16547032Kikuchi Y, Ohara N, Sato K, Yoshimura M, Yukitake H, Sakai E, Shoji M, Naito M, Nakayama K., Novel stationary-phase-upregulated protein of Porphyromonas gingivalis influences production of superoxide dismutase, thiol peroxidase and thioredoxin. Microbiology. 2005 Mar;151(Pt 3):841-53. PMID: 15758230Ueshima J, Shoji M, Ratnayake DB, Abe K, Yoshida S, Yamamoto K, Nakayama K., Purification, gene cloning, gene expression, and mutants of Dps from the obligate anaerobe Porphyromonas gingivalis. nfect Immun. 2003 Mar;71(3):1170-8. PMID: 12595429","Rocha,E.R., Owens,G. Jr. and Smith,C.J. 2000. The redox-sensitive transcriptional activator OxyR regulates the peroxide response regulon in the obligate anaerobe bacteroides fragilis. J. Bacteriol. 182 (18): 5059-5069. PubMed: 10960088.","Tue Jul 1 19:46:56 2008","Thu Mar 8 16:00:34 MST 2001","1","","21","PG0270" "PG0243","303982","304449","468","ATGTCTCTGAATAAAATCATCTTGATAGGCCGTACGGGCAAGGATCCCGAGATTCGGTATTTCGATAGCAATTCGGCTGTCGCAAACTTTTCGCTGGCTACTTCCGAGCGAGGCTACAAGCTGGCCAATGGCACTGAAGTGCCGGAGCGAACGGAATGGCATAATGTGGTTGCCTATCGCGAGTTGGCCATTTTTGCCGAGAAGTGGATCAAGAAAGGGAGTCTCCTATATGTCGAAGGAAAAATCCGCTACCGCACGTATGTAGACAATACAGGGGTTCGTCGGCAAGTGACGGAAATCCTTGCCGAGAAAATCAACTTTTTTGAAAGCGGTTCCTCCAATCGAGACGAAAGCAGAACTTCACAGACACCTTCATCGACTCAAGATACGACGCCCCTCGCGTCTTCTTCATCCGTCCGTGATACGGCAAAAGAAGAAAGCTCGGAACCTCCGTCCGACCTTCCGTTC","6.10","-0.76","17517","MSLNKIILIGRTGKDPEIRYFDSNSAVANFSLATSERGYKLANGTEVPERTEWHNVVAYRELAIFAEKWIKKGSLLYVEGKIRYRTYVDNTGVRRQVTEILAEKINFFESGSSNRDESRTSQTPSSTQDTTPLASSSSVRDTAKEESSEPPSDLPF","303976 304449","TIGR ID: PG0271","single stranded DNA-binding protein (single-strand binding protein) (ssDNA-binding protein)","Outer membrane, Periplasm, Cytoplasm","Numerous significant hits to single stranded DNA-binding protein (single-strand binding protein) in gapped BLAST; e.g. residues 1-150 are 40% similar to gb|AAF41819.1| single-strand binding protein of Neisseria meningitidis MC58, residues 3-113 are 48% similar to gb|AAB57887.1| single stranded DNA-binding protein of Shewanella sp. SC2A, residues 3-151 are 35% similar to pir||B38487 single-stranded DNA-binding protein of Escherichia coli plasmidplP71a (fragment).","
InterPro
IPR000424
Family
Single-strand binding protein/Primosomal replication protein n
PF00436\"[3-108]TSSB
PS50935\"[3-109]TSSB
InterPro
IPR011344
Family
Single-strand binding protein
PTHR10302\"[39-152]TSingle_strand_bd
TIGR00621\"[1-156]Tssb
InterPro
IPR012340
Domain
Nucleic acid-binding, OB-fold
G3DSA:2.40.50.140\"[3-144]TOB_NA_bd_sub
noIPR
unintegrated
unintegrated
PIRSF002070\"[3-152]TSSB
SSF50249\"[1-156]TNucleic_acid_OB


","BeTs to 13 clades of COG0629COG name: Single-stranded DNA-binding proteinFunctional Class: LThe phylogenetic pattern of COG0629 is ----yqvCeBRhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB000424 (Single-strand binding protein family) with a combined E-value of 9.3e-24. IPB000424A 3-38 IPB000424B 64-90","Residues 3-110 are 48% similar to a (PROTEIN NUCLEAR DNA-BINDING REPEAT TRANSCRIPTION) protein domain (PD001830) which is seen in P77974_BBBBB.Residues 4-107 are 40% similar to a (PROTEIN SINGLE-STRANDED DNA-BINDING) protein domain (PD186605) which is seen in SSB_HUMAN.Residues 49-83 are 60% similar to a (PROTEIN BINDING DNA-BINDING SINGLE-STRAND) protein domain (PD001738) which is seen in P77975_BBBBB.","","Wed Jun 13 16:30:01 MDT 2001","","Wed Jun 13 16:30:01 MDT 2001","Wed Jun 13 16:30:01 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Jun 13 16:30:01 MDT 2001","Wed Jun 13 16:30:01 MDT 2001","","","Wed Apr 25 18:29:56 MDT 2001","Wed Jun 13 16:33:08 MDT 2001","Thu Mar 8 16:14:00 MST 2001","Thu Mar 8 16:14:00 MST 2001","Thu Mar 8 16:14:00 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 8 16:14:00 MST 2001","-70% similar to PDB:1EQQ SINGLE STRANDED DNA BINDING PROTEIN AND SSDNA COMPLEX (E_value = 3.2E_21);-70% similar to PDB:1EYG Crystal structure of chymotryptic fragment of E. coli ssb bound to two 35-mer single strand DNAS (E_value = 3.2E_21);-70% similar to PDB:1KAW STRUCTURE OF SINGLE STRANDED DNA BINDING PROTEIN (SSB) (E_value = 3.2E_21);-70% similar to PDB:1QVC CRYSTAL STRUCTURE ANALYSIS OF SINGLE STRANDED DNA BINDING PROTEIN (SSB) FROM E.COLI (E_value = 3.2E_21);-70% similar to PDB:1SRU Crystal structure of full length E. coli SSB protein (E_value = 3.2E_21);","","","Residues 3 to 109 (E-value = 4e-31) place PG0243 in the SSB family which is described as Single-strand binding protein family (PF00436)","Thu Mar 8 16:14:00 MST 2001","34540113","","","Chilukuri,L.N. and Bartlett,D.H. 1997. Isolation and characterization of the gene encoding single-stranded-DNA-binding protein (SSB) from four marine Shewanella strains that differ in their temperature and pressure optima for growth. Microbiology 143 (Pt 4): 1163-1174. PubMed: 9141679.","","Thu Mar 8 16:14:00 MST 2001","1","","21","PG0271" "PG0244","304539","305795","1257","GTGGCTTTCATTATCGACCTGCTTCTTCTTTGCTGTTCGGCTTTTATGTCCTCCTGTGAGGTGGCTTATTTTTCACTAAAGCCGATCGATCTGCAGAACATCCGCGAACGGAATCACTCTTCCGACATCGCGCTTTCCAATTTATTAGACAATTCGAATCAGCTATTAGCTACTATTCTGATCGGGAATAATGTGATTAATGTAGCCATCGTTATCCTTTCCAATTATGCCATCGAGCAGACATTCGTTTTCTCTTCTCCGATCATTGGATTTCTGATCCAGACGATACTCCTGACCACTGTTCTTTTGCTGTTCGGAGAGATTCTGCCGAAAGTGTATGCGCGGAAGAATCCGCTGCAATACTCGCGCTTTTCTGCTGCAGCTATGTCCGTTATCTATAAGATATTGTCACCGTTTTCAAAATTGCTGGTCAAAAGTACCGGCATCGTTACCAGAGGTATCAGCAAGAAGAAATACGATATGTCCGTGGATGAGCTCTCGAAAGCGGTAGCCCTCACCACTACGGAGGGAGAGCCGGAGGAGAAAGAAATGATTAACGAAATCATCAAATTCTATAATAAGACAGCCTGCGAAATCATGGTTCCGCGTATCGATATTGTGGATGTGGATCTGAGCTGGCCATTTCGTAAGATGCTTGACTTCGTTGTTTCGTCGGGTTATTCCAGACTTCCCGTTTCAGAGGGGTCAGAAGACAATATCAAAGGGGTGATTTACATCAAAGATCTAATCCCACACATGGATAAAGGCGATGAATTCGACTGGCATCCTCTGATTCGTAAAGCATATTTTGTCCCCGAAAACAAGCGCATAGATGATTTGCTCGAGGAGTTCAGAGCCAATAAGGTGCATGTCTCCATCGTTGTGGATGAGTTCGGTGGCACTTGCGGACTGATCACAATGGAGGACATATTGGAAGAGATCGTCGGCGAGATTACGGACGAGTACGATGAGGAAGAACTCCCCTTTAAGGTTTTGGGGGATGGCAGTTATCTTTTCGAAGGAAAAACGTCTCTCTCCGATGTTCGACACTATCTTGACCTTCCGGAAAATGCTTTCGGTGAATTGGGGGACGAGGTAGATACGCTAAGTGGGCTCTTCTTGGAAATCAAGCAGGAACTCCCCCATGTGGGCGATACAGCAGTGTACGAGCCATTCCGCTTTCAAGTGACCCAAATGGACAAGCGCCGAATCATCGAAATCAAGATTTTCCCTTTCGAGCGCACTTGGGAGGTCGAA","4.50","-23.74","47562","VAFIIDLLLLCCSAFMSSCEVAYFSLKPIDLQNIRERNHSSDIALSNLLDNSNQLLATILIGNNVINVAIVILSNYAIEQTFVFSSPIIGFLIQTILLTTVLLLFGEILPKVYARKNPLQYSRFSAAAMSVIYKILSPFSKLLVKSTGIVTRGISKKKYDMSVDELSKAVALTTTEGEPEEKEMINEIIKFYNKTACEIMVPRIDIVDVDLSWPFRKMLDFVVSSGYSRLPVSEGSEDNIKGVIYIKDLIPHMDKGDEFDWHPLIRKAYFVPENKRIDDLLEEFRANKVHVSIVVDEFGGTCGLITMEDILEEIVGEITDEYDEEELPFKVLGDGSYLFEGKTSLSDVRHYLDLPENAFGELGDEVDTLSGLFLEIKQELPHVGDTAVYEPFRFQVTQMDKRRIIEIKIFPFERTWEVE","304470 305795","TIGR ID: PG0272","hemolysin-related protein with CBS domains","Inner membrane, Cytoplasm","Gapped BLAST shows numerous significant hits to hemolysin-related proteins; residues 1-409 have 39% similarity to gb|AAG00559.2, a gliding motility protein in Flavobacterium johnsoniae, residues 7-409 have 32% similarity to gi|4981378|gb|AAD35927.1, a hemolysin-related protein in Thermotoga maritima, and residues 9-401 have 30% similarity to gi|6459977|gb|AAF11725.1, a conserved hypothetical in Deinococcus radiodurans.This sequence is orthologous to CT256 and CT257.","
InterPro
IPR000644
Domain
Cystathionine-beta-synthase
PF00571\"[200-315]TCBS
SM00116\"[267-315]TCBS
InterPro
IPR002550
Domain
Protein of unknown function DUF21
PF01595\"[1-183]TDUF21
InterPro
IPR005170
Domain
Transporter-associated region
PF03471\"[330-413]TCorC_HlyC
InterPro
IPR006741
Family
Accessory gene regulator B
SM00793\"[38-160]Tno description
noIPR
unintegrated
unintegrated
PTHR22777\"[35-412]THEMOLYSIN-RELATED
signalp\"[1-19]?signal-peptide
tmhmm\"[5-25]?\"[55-73]?\"[83-105]?transmembrane_regions


","BeTs to 11 clades of COG1253COG name: Uncharacterized CBS domain-containing proteinsFunctional Class: RThe phylogenetic pattern of COG1253 is -----QVCEBRHuj--OLINXNumber of proteins in this genome belonging to this COG is 2","***** PF01595 (Domain of unknown function) with a combined E-value of 1.7e-25. PF01595A 198-207 PF01595B 290-321","Residues 270-413 are 31% similar to a (HEMOLYSIN, PUTATIVE) protein domain (PD172936) which is seen in O83071_TREPA.Residues 198-270 are 42% similar to a (PROTEIN TRANSMEMBRANE HEMOLYSIN INTERGENIC REGION CBS) protein domain (PD004826) which is seen in O51086_BORBU.Residues 278-338 are 62% similar to a (PROTEIN TRANSMEMBRANE HEMOLYSIN INTERGENIC REGION) protein domain (PD002327) which is seen in O51086_BORBU.Residues 167-320 are 24% similar to a (HYPOTHETICAL 36.7 KD PROTEIN) protein domain (PD067613) which is seen in YI41_MYCTU.","","Wed Jun 13 16:30:40 MDT 2001","","Wed Jun 13 16:30:40 MDT 2001","Wed Jun 13 16:30:40 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Jun 13 16:30:40 MDT 2001","Wed Jun 13 16:30:40 MDT 2001","","","Thu May 24 10:29:44 MDT 2001","Tue Jun 19 14:27:41 MDT 2001","Wed Mar 14 15:54:02 MST 2001","Tue Jun 19 14:27:41 MDT 2001","Tue Jun 19 14:27:41 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 3-409 are 26% similar to residues 3-410 of PG0413, a conserved hypothetical protein (possible hemolysin-related protein","Tue Jun 19 14:27:41 MDT 2001","Wed Mar 14 15:54:02 MST 2001","-100% similar to PDB:2NQW Structure of the transporter associated domain from PG_0272, a CBS domain protein from Porphyromonas gingivalis (E_value = 6.8E_47);","","","Residues 1 to 183 (E-value = 3.6e-34) place PG0244 in the DUF21 family which is described as Domain of unknown function DUF21 (PF01595)Residues 200 to 254 (E-value = 2.2e-05) place PG0244 in the CBS family which is described as CBS domain (PF00571)Residues 262 to 315 (E-value = 5.9e-09) place PG0244 in the CBS family which is described as CBS domain (PF00571)Residues 330 to 413 (E-value = 9.4e-17) place PG0244 in the CorC_HlyC family which is described as Transporter associated domain (PF03471)","Tue Jun 19 14:27:41 MDT 2001","34540114","","","","","","1","","21","PG0272" "PG0245","305834","306427","594","ATGCAGTTGATCCCCTTTGAAATCCCCGGAATACTTGTCGGTCGCTTTGAAAAATGCTCCGACAACAAGCGTGAGGATGAAAGGCAAAGGATCTCTCTCCTCCTTCGACGGGTTTTCCCTCACGATACTCCGCAAATCGGACATCTGCCAAGTGGTAAACCGATACTTGATTCGGCGCACAATATCAGTATCAGCCATACGGGTTCTTATGGAGCTATCTATGTAACACCGTCAAGCCTGATACCGGGCATCGACATCGAGATGCTATCGGATCGTGCTCTGCGAGTAGCCCCACGGTTCATGAATGAGCGAGAGTACGAATGGCTAATGTCTGCCGATGAGGCGAGACGACGATTGCTTGCGACCATCATATGGAGTGCCAAAGAGACCGCATACAAAATTTTCAATCCCTCCGATGCATCCCTCAAACGCTTTGATGTAGCACTTCCCTTCGAGCTGCCGAGCGAAAACACGCTGTTTTCTTTCGAACTGATCTATTCGGATTCGTGTACCGGCGACATTCACATTCCTGTTCAGGCTCTTTGCACCGGCGAATTTATCCTCACCTGTGCATGCCATTGCAGCCATAGCCGC","6.40","-2.60","22394","MQLIPFEIPGILVGRFEKCSDNKREDERQRISLLLRRVFPHDTPQIGHLPSGKPILDSAHNISISHTGSYGAIYVTPSSLIPGIDIEMLSDRALRVAPRFMNEREYEWLMSADEARRRLLATIIWSAKETAYKIFNPSDASLKRFDVALPFELPSENTLFSFELIYSDSCTGDIHIPVQALCTGEFILTCACHCSHSR","305783 306427","TIGR ID: PG0273","hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
noIPR
unintegrated
unintegrated
PTHR12215\"[52-129]TPTHR12215


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Wed Jun 13 16:37:46 MDT 2001","","Wed Jun 13 16:37:46 MDT 2001","Wed Jun 13 16:37:46 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Jun 13 16:37:46 MDT 2001","Wed Jun 13 16:37:46 MDT 2001","","","Thu Mar 1 14:45:48 MST 2001","","Thu Mar 1 14:45:48 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Jun 19 14:28:54 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Jun 19 14:28:54 MDT 2001","34540115","","","","","","1","","21","PG0273" "PG0245.1","306700","306161","540","GTGTATATACGGAAATATATTTCCGTATATAAGAAAATTTATCGGAGTATATACGAAAATATATTTCCGCATATGCGGAAATTTCGCCACCTTCTTGGTGCGATAAAAACGCTGACGCTGAACTACTTGGCATCGGAGGCGAGGTATTCTTCGAGGATACGAAGGCGCTCCGAATTGCTGAGATGTTTTGACATTTTTTCTTGGTTTGTCGCACACCCCAACTGTCAACTTTTTTCAGTACACGACAGGATCAAAATCCGACTTCGGGAATTAGCGGCTATGGCTGCAATGGCATGCACAGGTGAGGATAAATTCGCCGGTGCAAAGAGCCTGAACAGGAATGTGAATGTCGCCGGTACACGAATCCGAATAGATCAGTTCGAAAGAAAACAGCGTGTTTTCGCTCGGCAGCTCGAAGGGAAGTGCTACATCAAAGCGTTTGAGGGATGCATCGGAGGGATTGAAAATTTTGTATGCGGTCTCTTTGGCACTCCATATGATGGTCGCAAGCAATCGTCGTCTCGCCTCATCGGCAGACAT","","","20982","VYIRKYISVYKKIYRSIYENIFPHMRKFRHLLGAIKTLTLNYLASEARYSSRIRRRSELLRCFDIFSWFVAHPNCQLFSVHDRIKIRLRELAAMAAMACTGEDKFAGAKSLNRNVNVAGTRIRIDQFERKQRVFARQLEGKCYIKAFEGCIGGIENFVCGLFGTPYDGRKQSSSRLIGRH","","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No hit found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","21","" "PG0246","307554","307048","507","ATGAAAAAGAACATTTGCTCGAAAGCCATTCTCTTGGCTTCTCTGCTCCTCCTCTCAGTCGGGACAATGACTGCATCCTGTACTTCCAAGAATGACACTCGTCAAGAAGAAACCGTCTCTGCCGATAGCAAGGGAGAGAAAGATGGCAAAATCATCCATATCACGGCTGAATACATGCGCGAACACATATATGATTACACAGCCAATCCCCAAGAATGGGTCTATAAAGGTGATAAGCCTGCTATTATCGACTTCTATGCCGACTGGTGTGGCCCGTGCCGCAGCCTTTCGCCCAAATTGGAAGAGGTGGCCAAGAAATATGCCGGTAAACTCACCGTCTACAAAGTCGATGTGGACAAAGAAAAAGAGTTGGCAGGGATTTTCGGTGTCAGAAGTATTCCGATGGTTCTTTTCGTACCGGTAAAAGGAATACCGACGCAAACGATGGGCAATCTGCCGATGGAGAACATCGAAGAGGCTATCGCCAAAATCATGCAATCTGATCTA","6.50","-0.71","18794","MKKNICSKAILLASLLLLSVGTMTASCTSKNDTRQEETVSADSKGEKDGKIIHITAEYMREHIYDYTANPQEWVYKGDKPAIIDFYADWCGPCRSLSPKLEEVAKKYAGKLTVYKVDVDKEKELAGIFGVRSIPMVLFVPVKGIPTQTMGNLPMENIEEAIAKIMQSDL","307554 307048 [Bad Olap 322 98 40]","TIGR ID: PG0275","thioredoxin","Periplasm, Cytoplasm","Numerous significant hits to thioredoxin proteins in gapped BLAST; e.g. residues 52-161 are 46% similar to gbAAC66447.1 thioredoxin of Borrelia burgdorferi, residues 72-163 are 39% similar to gbAAC49358.1 thioredoxin m of Pisum sativum, residues 74-165 are 39% similar to gbAAA26182.1 thioredoxin of Rhodobacter sphaeroides.","
InterPro
IPR006662
Domain
Thioredoxin-related
PR00421\"[81-89]T\"[89-98]T\"[129-140]TTHIOREDOXIN
PS00194\"[82-100]TTHIOREDOXIN
InterPro
IPR012335
Domain
Thioredoxin fold
G3DSA:3.40.30.10\"[60-168]TThioredoxin_fold
InterPro
IPR012336
Domain
Thioredoxin-like fold
SSF52833\"[59-166]TIPR012336
InterPro
IPR013766
Domain
Thioredoxin domain
PF00085\"[76-164]TThioredoxin
InterPro
IPR015467
Domain
Thioredoxin family
PTHR10438\"[71-167]TTrx
noIPR
unintegrated
unintegrated
PTHR10438:SF13\"[71-167]TPTHR10438:SF13
PS51257\"[1-27]TPROKAR_LIPOPROTEIN


","BeTs to 13 clades of COG0526COG name: Thiol-disulfide isomerase and thioredoxinsFunctional Class: O,CThe phylogenetic pattern of COG0526 is AMTkYQVCEBRHUJgpoLINXNumber of proteins in this genome belonging to this COG is 7","***** IPB000063 (Thioredoxin family) with a combined E-value of 7.4e-08. IPB000063 82-94","Residues 63-132 are 52% similar to a (REDOX-ACTIVE CENTER PROTEIN ISOMERASE PRECURSOR) protein domain (PD000175) which is seen in THIO_BORBU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Mar 8 16:29:19 MST 2001","Thu Apr 29 12:06:43 2004","Thu Mar 8 16:29:19 MST 2001","Thu Mar 8 16:29:19 MST 2001","Thu Mar 8 16:29:19 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 79-139 are 49% similar to PG0030, a predicted thioredoxin. Similarities are also seen to PG1431, a predicted ytochrome c biogenesis protein CycX homolog.","Thu Mar 8 16:29:19 MST 2001","Thu Apr 29 12:06:43 2004","-66% similar to PDB:1NW2 The crystal structure of the mutant R82E of Thioredoxin from Alicyclobacillus acidocaldarius (E_value = 1.5E_17);-66% similar to PDB:1QUW SOLUTION STRUCTURE OF THE THIOREDOXIN FROM BACILLUS ACIDOCALDARIUS (E_value = 1.5E_17);-65% similar to PDB:1NSW The Crystal Structure of the K18G Mutant of the thioredoxin from Alicyclobacillus acidocaldarius (E_value = 9.5E_17);-65% similar to PDB:1RQM SOLUTION STRUCTURE OF THE K18G/R82E ALICYCLOBACILLUS ACIDOCALDARIUS THIOREDOXIN MUTANT (E_value = 9.5E_17);-65% similar to PDB:1FB0 CRYSTAL STRUCTURE OF THIOREDOXIN M FROM SPINACH CHLOROPLAST (REDUCED FORM) (E_value = 1.2E_16);","","","Residues 67 to 166 (E-value = 3.9e-23) place PG0246 in the Thioredoxin family which is described as Thioredoxin (PF00085)","Thu Mar 8 16:29:19 MST 2001","34540117","","","Pille,S., Chuat,J.Claude, Breton,A.M., Clement-Metral,J.D. andGalibert,F. 1990. Cloning, nucleotide sequence, and expression of the Rhodobacter sphaeroides Y thioredoxin gene. J. Bacteriol. 172: 1556-1561. PubMed: 2137818. Uziel O, Borovok I, Schreiber R, Cohen G, Aharonowitz Y.Transcriptional regulation of the Staphylococcus aureus thioredoxin and thioredoxin reductase genes in response to oxygen and disulfide stress.J Bacteriol. 2004 Jan;186(2):326-34.PMID: 14702300","","Thu Apr 29 12:06:43 2004","1","","21","PG0275" "PG0248","308879","307695","1185","GTGAAAGGTACAAAATCCGGTGTAACCTTTGACTACTTAGGTAAACTAAATACGAGTTTTATGGCTGTAGAAATAAGAGAAGTATTGGACAAAGCCGAGCTGAAGAAATTCGTTCAGTTCAATATAGATCTCTATAGAAATAATCCCTACCATGTGCCGGGGCTGATCGATGATGAGATGATGACCTTGGACAAAGACCGCAATCCGGCTTTTGAGTTCTGCGAAGCCATCTATTTCTTGGCTTATCGTGAAGGGCGGATCGTGGGACGCATCGCCGGTATGATCAATCACCGTGCCAATGAAACTTGGAATCAGAACAACGCTCGTTTCGGGTTCGTCGATTTCATCAACGACAATGAAGTCGTAGATGCCCTTTTCCATGCCGTATCCGAATGGGCACGCTCCAAGGGGATGGATATGCTGCAAGGGCCAATGGGTTTCACCGATATGGACCACGAAGGGATGCTTATCGAAGGCTTCGACCAGCTGGGTACGATGGCTACCATTTACAACTACGCTTATTACCCCAAACAGCTTGAGCGTCTGGGTTTCATCAAAGATCAGGACTGGAAGGAGTATAAGATCTTCGTGCCTACTGAAATTCCGGAAAAACACCGTCGCATTTCCGAGATCGTACGCCAAAAGTACGGACTCAAGACTCTCAAATTCCGGACACGCAAAGAGGTCATGCCCTATGCCCATCGTATATTCCGCACCCTCAATAAGGCTTATAGCCAGCTCTACGGCTTCTCCGAGTTGTCCGAAGCTCAAATAGACTACTATGTCAATATCTATATCCCGATGGTGCGGCTCGACTTCGTTACGGTGATCGTCCGCGAGGAAGACGACGAAGTGATCGCCTTCTCCATCACCATGCCCAATCTCAGCCGAGCACTCAAGAAAGCGAAAGGAAGTCTCTGGCCTTTCGGATTCGTCCATCTGCTCAAAGCTCTCAAAGGCAGACCTCGTGTGGTCGATCTCTACCTGATCGGCGTATTGCCGGAATATCAAAACAAAGGTGTAAACGCCCTCATCTTCGATAATATGATCCCGATCTTCCAAAAGAACGGAGTGGAGTATGCAGAGAGCAATCCCGAATTGGAAACCAATATGGCCGTGCAAATGCAGTGGAACTACTTCGAACGTAAACACCACAAAACGCGTCGGGCATTTATCAAACGGCTC","9.30","5.15","46334","VKGTKSGVTFDYLGKLNTSFMAVEIREVLDKAELKKFVQFNIDLYRNNPYHVPGLIDDEMMTLDKDRNPAFEFCEAIYFLAYREGRIVGRIAGMINHRANETWNQNNARFGFVDFINDNEVVDALFHAVSEWARSKGMDMLQGPMGFTDMDHEGMLIEGFDQLGTMATIYNYAYYPKQLERLGFIKDQDWKEYKIFVPTEIPEKHRRISEIVRQKYGLKTLKFRTRKEVMPYAHRIFRTLNKAYSQLYGFSELSEAQIDYYVNIYIPMVRLDFVTVIVREEDDEVIAFSITMPNLSRALKKAKGSLWPFGFVHLLKALKGRPRVVDLYLIGVLPEYQNKGVNALIFDNMIPIFQKNGVEYAESNPELETNMAVQMQWNYFERKHHKTRRAFIKRL","308885 307695","TIGR ID: PG0276","conserved hypothetical protein","Cytoplasm","Residues 25 to 395 share 26% similarity with gb|AAC76017.1| (AE000381), a hypothetical protein in Escherichia coli K12.This sequence is similar to BT3032.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 29-395 are 26% similar to a (ORF_F390) protein domain (PD136495) which is seen in Q46840_ECOLI.","","Wed Jun 13 16:34:08 MDT 2001","","Wed Jun 13 16:34:08 MDT 2001","Wed Jun 13 16:34:08 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Jun 13 16:34:08 MDT 2001","Wed Jun 13 16:34:08 MDT 2001","","","Thu Mar 1 14:43:20 MST 2001","Fri Dec 19 10:37:54 2003","Thu Mar 1 14:43:20 MST 2001","","Tue Jun 19 14:30:44 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 14:43:20 MST 2001","-61% similar to PDB:1REO L-amino acid oxidase from Agkistrodon halys pallas (E_value = );-61% similar to PDB:1TDK L-amino acid oxidase from Agkistrodon halys in complex with suicide substrate L-vinylglycine (E_value = );-61% similar to PDB:1TDN L-amino acid oxidase from Agkistrodon halys in complex with L-leucine (E_value = );-61% similar to PDB:1TDO L-amino acid oxidae from Agkistrodon halys in complex with L-phenylalanine (E_value = );-42% similar to PDB:1BXN THE CRYSTAL STRUCTURE OF RUBISCO FROM ALCALIGENES EUTROPHUS TO 2.7 ANGSTROMS. (E_value = );","","","No significant hits to the Pfam 11.0 database","Tue Jun 19 14:30:44 MDT 2001","34540118","","","","","","1","","21","PG0276" "PG0249","308996","310123","1128","ATGTATCATTCTCTATTTGAAAGCCTCTGCATGGTTCCGGACCCACGGATAGAGCGTAAAAAAATTTATCCTCTTGATTTTTTACTGCTGATCGTTTTCCTCTCTACACTCTCAGGCAATACCTCTTGGTATGAGATTGAAGATTATGCCGAGGAATACGAAGAAGAATTGAAAAGTCTATACGAAATGCTTACCGGCCATCAGCTTATGCATACCATGCCTTCTCATGATACTCTCAACAGGAGCATCAGTCTGTTGGATGTAGAAGCTTTTGAGGGGGCTTATAAGCGATGGATTGAAGGCTTTATCTCGGCCACTTCGGGTAAACATATTTGCATTGATGGCAAGACGATGCGGGGAGTGAAGAAACTCTCTTTCGATACACAATCCCATGTCGTCTCTGCCTTTTCACCACAAGATATGTGCAGTCTTGCCCAACTCTACATCGACCGAAAAACAAACGAAATACCGGCTATACATCAACTTCTTGATTTGCTTGACTTGAACGGGGCTGTTGTCTCCATTGATGCCATAGGTACACAAACTGCCATTGCCGAACAAATTATCGATAAGGGCGGAAACTATGTATTGTGTGTTAAAGCGAATCAAAGTTTGAGTCTGCAAGAGATTGAAGCCTATTTCTGCCCTCTTTTTCAGAAACATATCCTCCTTGACGAACAGACGGAACTATCTCACGGACGCATAGAAACACGTCGCTATGAAAGTATTCTCAATCCCTTGGAGATAGAAGCCAACGAGGTATTAACTCGCTGGAAAGGCTTGAGGTCGATACACAAAGTTGTACGCAAACGAAGGGATAAAAAGAGTGACAAAACGAGTGAAGAAGTGGCCTACTACATTTCGTCATTAACAGATGTTTCTTCATTGAAACAAGCTATTCGTGGGCATTGGGCGATAGAGAATAAGTTACACCACTGTTTGGATGTCTATTTCGGACACGATGCCTCGCACAAGAGAACGAGGAATGTGGCGCAGATTATGGATATCATTCAAAAGATTAATTTACTCATTATAGAGAGACTAAAAACGAATATGAAGTCCTCAATCCCTCGCATCCAAAAGAAACTGGCTCGAATGAAGCCACAACAACTAATCACAATACAATTT","7.40","2.35","43313","MYHSLFESLCMVPDPRIERKKIYPLDFLLLIVFLSTLSGNTSWYEIEDYAEEYEEELKSLYEMLTGHQLMHTMPSHDTLNRSISLLDVEAFEGAYKRWIEGFISATSGKHICIDGKTMRGVKKLSFDTQSHVVSAFSPQDMCSLAQLYIDRKTNEIPAIHQLLDLLDLNGAVVSIDAIGTQTAIAEQIIDKGGNYVLCVKANQSLSLQEIEAYFCPLFQKHILLDEQTELSHGRIETRRYESILNPLEIEANEVLTRWKGLRSIHKVVRKRRDKKSDKTSEEVAYYISSLTDVSSLKQAIRGHWAIENKLHHCLDVYFGHDASHKRTRNVAQIMDIIQKINLLIIERLKTNMKSSIPRIQKKLARMKPQQLITIQF","308996 310123","Note BLAST similarities to E.coli and V.cholerae proteins.Member of IS5 family of elements.TIGR ID: PG0277","ISPg2 (PGIS2) transposase","Cytoplasm","PG0249 is equivalent to the previously sequenced gb|AAC45368.1 in GenbBANK. Residues 4-364 are 32% similar to an uncharacterized sequence from E.coli 0157:H7 (AE005200). Residues 11-358 are 31% similar to the RfbQRSO22-3 sequence of V.cholerae (AF004383).","
InterPro
IPR002559
Domain
Transposase, IS4-like
PF01609\"[110-344]TTransposase_11


","No hit to the COGs database.","***** PF01811 (Transposase) with a combined E-value of 2e-24. PF01811A 0-35 PF01811B 36-52 PF01811E 134-181 PF01811F 183-207","Residues 132-264 are identical to a (PROTEIN TRANSPOSASE REGION PUTATIVE) protein domain (PD004339) which is seen in P95492_PORGI.Residues 332-376 are identical to a (PUTATIVE TRANSPOSASE) protein domain (PD054580) which is seen in P95492_PORGI.Residues 279-331 are identical to a (PROTEIN TRANSPOSASE PUTATIVE REGION) protein domain (PD004012) which is seen in P95492_PORGI.Residues 1-131 are 83% similar to a (PUTATIVE TRANSPOSASE) protein domain (PD103322) which is seen in P95492_PORGI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Thu Feb 8 13:13:26 MST 2001","Thu Feb 8 12:20:59 MST 2001","Thu Feb 8 12:22:11 MST 2001","Thu Feb 8 12:19:38 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","PG0249 is identical to PG1522, PG1185, PG0775 and PG1905, all predicted ISPg2 elements. PG0249 is similar to PG0943 and weakly similar to PG1058, PG0889, PG1795 and PG1855.","Thu Feb 8 12:20:59 MST 2001","","-47% similar to PDB:2IPX Human Fibrillarin (E_value = );","","","Residues 110 to 344 (E-value = 5.8e-39) place PG0249 in the Transposase_11 family which is described as Transposase DDE domain (PF01609)","","34540119","","Wang,C.Y., Bond,V.C. and Genco,C.A.Identification of a second endogenous Porphyromonas gingivalisinsertion element. J. Bacteriol. 179 (11), 3808-3812 (1997)","","Thu Feb 8 12:19:38 MST 2001","","1","","21","PG0277" "PG0250","310187","310534","348","ATGTTCGGGCTGCCGATGTATAACGTTTGGCGAGCCGAACAGGCAGGAAAAGCAGAGTTTTCCAAAGCAGAACAAAACAGAAGGATCAAAATCGAAGAAGCAAAAGCCAATCTCGAAGCAGAGAAGCTCAATGCCAAAGCAGAGATCGAACGGGCAAAAGGAGCTGCAGAAGCCATCAGAATAGAAAACAACAGCCTTACGCCCACATACATTCAGTATCTATGGGTGCGTCAGCAGGGCAGCCTGAATGACAAGACCGTGATCTACATTCCGACGGAAGCCAACCTGCCACTCTTGGAAGCCGGCAGAACCGCCGGCGGACTCAAGCGGGCAGAATGTCCTACCGAG","8.40","0.95","12990","MFGLPMYNVWRAEQAGKAEFSKAEQNRRIKIEEAKANLEAEKLNAKAEIERAKGAAEAIRIENNSLTPTYIQYLWVRQQGSLNDKTVIYIPTEANLPLLEAGRTAGGLKRAECPTE","310187 310534","TIGR ID: PG0278","hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Mar 1 14:40:52 MST 2001","","Thu Mar 1 14:40:52 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 14:40:52 MST 2001","-61% similar to PDB:2BVL CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF TOXIN B FROM CLOSTRIDIUM DIFFICILE IN COMPLEX WITH UDP, GLC AND MANGANESE ION (E_value = );-61% similar to PDB:2BVM CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF TOXIN B FROM CLOSTRIDIUM DIFFICILE IN COMPLEX WITH UDP, GLC AND MANGANESE ION (E_value = );-59% similar to PDB:2J2C CRYSTAL STRUCTURE OF HUMAN CYTOSOLIC 5'-NUCLEOTIDASE II (NT5C2, CN-II) (E_value = );-59% similar to PDB:2JC9 CRYSTAL STRUCTURE OF HUMAN CYTOSOLIC 5'-NUCLEOTIDASE II IN COMPLEX WITH ADENOSINE (E_value = );-59% similar to PDB:2JCM CRYSTAL STRUCTURE OF HUMAN CYTOSOLIC 5'-NUCLEOTIDASE II IN COMPLEX WITH BERYLLIUM TRIFLUORIDE (E_value = );","","","No significant hits to the Pfam 11.0 database","Thu Mar 1 14:40:52 MST 2001","34540120","","","","","","1","","","PG0278" "PG0251","313044","310768","2277","ATGAACAGCAAACTCGAAGAACAGGCACGAGCCTACCATGCCGAAGGTAAGCCCGGCAAACTCGAAATCAGGCCTACGAAGCCTCATTCTACTCAGCACGATCTGACGCTGGCATATAGTCCGGGAGTAGCGGTGCCCTGCAAGGACATCGAACAGGATCCGGCATTTGCATACAAATACACGGCCAAGGGCAATCTCGTAGCCGTGATCTCGAATGGTACCGCCGTTCTGGGACTGGGGGATATAGGTGCTTTGGyCGGCAAGCCGGTTATGGAGGGGAAAGGATTGCTTTTCAAGATATATGCCGGTATACATGTGTTCGACATTGAGATAGACGAGACGGATCCGAAGCGGTTCATCGAAGTGGTCAAGGCTATTGCTCCGACCTTCGGAGGGATCAACCTCGAAGATATCAAAGCACCCGAATGCTTCGAAATAGAGGAGACGCTGAAGCGAGAATTGGATATACCCGTCATGCACGACGATCAGCACGGCACTGCGATCATCTCTTCTGCCGGCCTGATCAATGCACTGATGATAGCAGGCAAAAAGATCGAGGATGTGCGTATCGTAGTGAACGGTGCAGGAGCATCGGCTTTCTCCTGCACCAAACTGTACGAATCCTTCGGTGCCAGAAGAGAAAACATCCTGATGCTCGACAGCAAAGGGGTGATCACGGCAGATCGGACGGATCTGACCGAACAGAAACGCTACTTTGCCACCGAACGTACCGATGTGCACACGCTGGCCGAGGCCATTGCCGGTGCAGACGTCTTCGTCGGTCTGTCCCGACCCAATGTGCTCACGCAGGATATGGTGCGGACGATGGCTCCCAATCCCATTGTATTTGCTCTGGCCAATCCCAATCCGGAGATTACTTATGAGCAAGCTACTGCCGCTCGTGAGGATATTATCATGGCTACGGGGCGTTCGGATTATCCCAACCAGATCAACAATGTGATCGGTTTCCCTTATATATTCCGTGGAGCTTTGGACGTTAGTGCCAAGGCTATCAATGAGGAAATGAAACGGGCTGCTACGATGGCTATCGCGGATTTGGCGCGAGAGACTGTCCCCGACGAAGTACTGCGAGCCTATGGCAATACTCAGTTGCACTTCGGGAAGGACTACTTTATTCCCAAGCCGGTGGATCCTCGTCTGATCGTTCGCGTATCTACTGCCGTAGCACGTGCGGCAGTCGAGAGCGGAGTGGCTGAGCATCCTATTGCGGATTGGGCTGCTTATGAGGCCGAATTGTTGGGACGGGTGGGACTGATGAGCCACCTTACGCGTCGTCTTCATGAATCTGCCAAGCTCAATCCTCATCGCGTGATCTATGCAGCCTGCGAGAATCCTTCGGTGCTGAAAGCTGCCGTATCGGCACGTGCACATGGAATAGCCCGACCGATCATGTTGGGGGATGAGAAGCAAATTCGGGATTTTGCCGCAGAGTTGGATTTATCTTTGGAGGGTATCGAAATCGTTAATTACCGCTCCGATGAAGAAAAGGCTCGCCGTCATCATTATGCCCGTGTCTTTGCCGAACAGAACTGGCGGCGCGGAGGCAATCATACCGAAGCGCTGGACAAGATGTTCGACCCCAACTATTTCGGTATGATGATGGTGCGCTTGGGGGATGCCGATGCTATGATCACGGGCATATACAGCAAGCATAGCTATCTGGCGGAAGTGGCCAAGCAGACTGTCGGCCTGCAAGAGGGCGTCGGTCACTTTGCCACTATGCATATGGTCAGCCTGAAGAACGGGCCACTCTTCCTGGCCGATACGCTGATCAATCACAACCTTTCGGCCGAGGCTCTTGTGGACATCGCCGTCATGGCCTATGAGAAAGCACACTGTTTCGGCGTAAAGCCTGTATTGGCGATAGTCGGCTTCTCCGACTTCGGAGCCGACAGCGATGCGGATAGTACGGTGGAGGCTGCGAAGGCTGTGGCCATATTGCATGAGAAATACCCCTATATTCTCGTGGATGGAGAGATGCGGGTATCCTTGGCTCTCCATGCCGAAAAGAGAGATAAGCAGTATCCGCAGAATAAGATCAAGGGGCGTAATGCCAATGTTTTGATCTTCCCGCGTCTCTCGGCGGCGAATGCATGTTACCAGTTGCTTCGCGAAGCGGACGATGCCGAGGAGGTGCTGGGTCCTATTCAGATCGGTCTGGCTAAGCCTGTCTACTTTGCCGACCATGATGCTACTGTATCGGACATCCTCAATATCACGGCCATGGCCGTACTGGACAGCCACGCCTGTCTGATT","5.90","-15.23","82962","MNSKLEEQARAYHAEGKPGKLEIRPTKPHSTQHDLTLAYSPGVAVPCKDIEQDPAFAYKYTAKGNLVAVISNGTAVLGLGDIGALXGKPVMEGKGLLFKIYAGIHVFDIEIDETDPKRFIEVVKAIAPTFGGINLEDIKAPECFEIEETLKRELDIPVMHDDQHGTAIISSAGLINALMIAGKKIEDVRIVVNGAGASAFSCTKLYESFGARRENILMLDSKGVITADRTDLTEQKRYFATERTDVHTLAEAIAGADVFVGLSRPNVLTQDMVRTMAPNPIVFALANPNPEITYEQATAAREDIIMATGRSDYPNQINNVIGFPYIFRGALDVSAKAINEEMKRAATMAIADLARETVPDEVLRAYGNTQLHFGKDYFIPKPVDPRLIVRVSTAVARAAVESGVAEHPIADWAAYEAELLGRVGLMSHLTRRLHESAKLNPHRVIYAACENPSVLKAAVSARAHGIARPIMLGDEKQIRDFAAELDLSLEGIEIVNYRSDEEKARRHHYARVFAEQNWRRGGNHTEALDKMFDPNYFGMMMVRLGDADAMITGIYSKHSYLAEVAKQTVGLQEGVGHFATMHMVSLKNGPLFLADTLINHNLSAEALVDIAVMAYEKAHCFGVKPVLAIVGFSDFGADSDADSTVEAAKAVAILHEKYPYILVDGEMRVSLALHAEKRDKQYPQNKIKGRNANVLIFPRLSAANACYQLLREADDAEEVLGPIQIGLAKPVYFADHDATVSDILNITAMAVLDSHACLI","313380 310768","This is a multidomain protein with residues 1-400+ a malic enzyme and 400-750 a phosphate acetyltransferase and the entire protein a NADP-dependent malic enzyme.TIGR ID: PG0279","NADP-dependent malic enzyme (malate oxidoreductase and phosphotransacetylase)","Cytoplasm","Residues 1-754 are 47% similar to three proteins: AAC75516.1 of E.coli with two domains, the amino half a malic enzyme, the carboxyl portion is phosphate acetyltransferase, AAG57572, an E.coli putative multimodular enzyme and gb|AAC22896.1, a malate oxidoreductase in H. influenzae.Residues 1-400 show strong similarity to many malic enzymes (malate oxidoreductase) in a wide range of Prokaryotic organisms while residues 400-750 show similarity to many predicted phosphotransacetylases (phosphate acetyltransferase) again in a wide range of organisms.This sequence is similar to BT1969.","
InterPro
IPR002505
Domain
Phosphate acetyl/butaryl transferase
PF01515\"[428-751]TPTA_PTB
InterPro
IPR012301
Domain
Malic enzyme, N-terminal
PF00390\"[18-161]Tmalic
InterPro
IPR012302
Domain
Malic enzyme, NAD-binding
PF03949\"[163-400]TMalic_M
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.10380\"[2-160]Tno description
G3DSA:3.40.50.720\"[163-423]Tno description
PTHR23406\"[19-415]TMALIC ENZYME-RELATED
PTHR23406:SF2\"[19-415]TMALIC ENZYME


","No hit to the COGs database.","***** PF01515 (Phosphate acetyl/butaryl transferase) with a combined E-value of 4.9e-11. PF01515A 593-611 PF01515B 664-705 PF01515C 708-751***** IPB001891 (Malic enzymes) with a combined E-value of 9.2e-10. IPB001891E 138-187 IPB001891G 215-225 IPB001891J 309-342","Residues 7-68 are 66% similar to a (OXIDOREDUCTASE ENZYME MALIC MALATE) protein domain (PD005834) which is seen in O30808_BBBBB.Residues 408-599 are 26% similar to a (NADP-DEPENDENT MALIC ENZYME EC) protein domain (PD128460) which is seen in O30808_BBBBB.Residues 69-415 are 59% similar to a (ENZYME OXIDOREDUCTASE MALIC MALATE) protein domain (PD001213) which is seen in MAOX_HAEIN.Residues 437-750 are 31% similar to a (TRANSFERASE PHOSPHATE PHOSPHOTRANSACETYLASE) protein domain (PD002789) which is seen in P76558_ECOLI.","","Thu Jun 14 10:37:57 MDT 2001","","Thu Jun 14 10:37:57 MDT 2001","Thu Jun 14 10:37:57 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 10:37:57 MDT 2001","Thu Jun 14 10:37:57 MDT 2001","","Tue Jun 19 14:41:26 MDT 2001","Tue Feb 13 17:19:22 MST 2001","Tue Dec 9 16:50:58 2003","Tue Feb 6 13:19:32 MST 2001","Tue Jun 19 14:41:26 MDT 2001","Tue Jun 19 14:41:26 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 425 to 749 show a 26% similarity to PG0964, a phosphotransacetylase.","Tue Jun 19 14:41:26 MDT 2001","Mon Feb 12 18:02:58 MST 2001","-65% similar to PDB:1WW8 Crystal Structure of malic enzyme from Pyrococcus horikoshii Ot3 (E_value = 4.1E_88);-62% similar to PDB:2A9F Crystal structure of a putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)) (E_value = 8.0E_84);-64% similar to PDB:1VL6 Crystal structure of NAD-dependent malic enzyme (TM0542) from Thermotoga maritima at 2.61 A resolution (E_value = 9.2E_72);-64% similar to PDB:2HAE Crystal structure of a putative malic enzyme (malate oxidoreductase) (E_value = 9.2E_72);-47% similar to PDB:1TD9 Crystal Structure of a Phosphotransacetylase from Bacillus subtilis (E_value = 2.0E_26);","","","Residues 19 to 161 (E-value = 9.2e-72) place PG0251 in the malic family which is described as Malic enzyme, N-terminal domain (PF00390)Residues 163 to 400 (E-value = 9.1e-115) place PG0251 in the Malic_M family which is described as Malic enzyme, NAD binding domain (PF03949)Residues 428 to 751 (E-value = 2.3e-44) place PG0251 in the PTA_PTB family which is described as Phosphate acetyl/butaryl transferase (PF01515)","Tue Dec 9 16:50:58 2003","34540121","","","","","","1","","","PG0279" "PG0252","314715","313390","1326","ATGCTACATCATATTATCAAGATCATCCGCGCCGAACGTCGTGCCAACCTCTGGATATGGCTGGAGATGCTCGTCGTATGTGGCCTGCTTTGGTTCGTCACGGACTATGCCGTGACAGCTCTGCGTGCTTGGACACGCCCATTGAACTACGATATAGAACACGTGTACCGCATCACGCTGGCAACCGTACAAAAAGATAAGGATGGAAAATGGAAAGAGAGGTCTGCGGATCAGGGAAAAACCATGATGCAAACCCTCGATCTGATCGCTGCATATCCCGGAGTGGAAGCGGCTTGTCTCCAACAGTGGGGCGGTCATTATTCCTCTTCGTCAAGTAACAGTAGCTTTCAACTGGACACCGTATCACTCATAAACGTTGAGGATCGAATGGTTTCGCCGGATTATTTCCGTGTATTTCGTGTCTATGGAGCCGATGGTTCTTCGCCGGAAGAGATGGCGGAACGATTCGGCAAACTTCACATGAACGATCTCCAACGGGACTACTATCTCTCGCGCAATGCCCTCGACTATGTGGAGAAAGTCAATGGCGAAGGACGAGAAAGCGACCGCCGCTACATAGGCATGTCGGATAGCATCAACTACAATATGGTATCCGTTGTCGATGGCGTCCAAAGCGAAAAGAGTATCCGATACAATCAGACACTGCGAGGACTCATACCGGATCAGCCCAAAAACGAAGCCGAAAGTACCGGCTATATCAGCCTAAAGCCCATCACCGAGGAGTACATTTCGCAAAACGAACTCATATCTTACTCCGTCTATCTGCGTGTCTCTCCCGAAGCGGATACGCCGGACTTCAAAGAGCAGTTCGTGAAAAGGATGAAAGCCGTGACCAAGGACGATACCTATCCTGTACTGACGATGAATGCTGTCAGTGAAGACCGGGCAGGGATATTGGCCGATCCTGTCCGGCAGATCAATAATCATCTGGCCATCGGTTTCTTCCTTCTGCTCAATATATTCCTCGGTATCGTCGGCACCTTCTGGGTGCGAACCGAGCAGCGACGCGCCGAAGTAGGAATCCGCCGTGTAGTGGGATCCACGAACAGGAGCGTATTCTCGCTCATGTTCGGCGAGGGGATTATACTGATGACACTGGCTTTCCTGCCTGCGGCCGTAGCCGCATGGTACGTCATGTTCCATACCGATCTTTGCGACATCAAGGTGTTTCCTCTCGGCCGGGGACGTCTTTTGCTCGGATTGGGGTGTACTTATTTGCAGATGCTGCTGATGGTTTTTCTCGGTACTTTCATTCCCGTACTGCGTGCTTTGCGTGTGCCTCCGACCGAAGCTATCCGCAGCGAG","6.90","-0.47","50374","MLHHIIKIIRAERRANLWIWLEMLVVCGLLWFVTDYAVTALRAWTRPLNYDIEHVYRITLATVQKDKDGKWKERSADQGKTMMQTLDLIAAYPGVEAACLQQWGGHYSSSSSNSSFQLDTVSLINVEDRMVSPDYFRVFRVYGADGSSPEEMAERFGKLHMNDLQRDYYLSRNALDYVEKVNGEGRESDRRYIGMSDSINYNMVSVVDGVQSEKSIRYNQTLRGLIPDQPKNEAESTGYISLKPITEEYISQNELISYSVYLRVSPEADTPDFKEQFVKRMKAVTKDDTYPVLTMNAVSEDRAGILADPVRQINNHLAIGFFLLLNIFLGIVGTFWVRTEQRRAEVGIRRVVGSTNRSVFSLMFGEGIILMTLAFLPAAVAAWYVMFHTDLCDIKVFPLGRGRLLLGLGCTYLQMLLMVFLGTFIPVLRALRVPPTEAIRSE","314715 313390","See ABC Transporters Analysis.TIGR ID: PG0280","conserved hypothetical protein(possible ABC permease with MSD domain)","Inner membrane, Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR003838
Domain
Protein of unknown function DUF214, permase predicted
PF02687\"[257-435]TFtsX


","BeTs to 3 clades of COG0577COG name: Predicted permeaseFunctional Class:  RThe phylogenetic pattern of COG0577 is AMt--QVcEBRHuj--OLinxNumber of proteins in this genome belonging to this COG is 8","***** BP03665 (PROTEIN TRANSMEMBRANE CONSERVED MEMBRA) with a combined E-value of 7.6e-07. BP03665B 322-376 BP03665C 415-442","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Fri Jun 15 22:37:56 MDT 2001","Sat Jun 2 17:18:02 MDT 2001","","Thu Mar 1 14:39:49 MST 2001","Thu Mar 1 14:39:49 MST 2001","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 14:39:49 MST 2001","-55% similar to PDB:2I00 Crystal structure of acetyltransferase (GNAT family) from Enterococcus faecalis (E_value = );-49% similar to PDB:1EPW CRYSTAL STRUCTURE OF CLOSTRIDIUM NEUROTOXIN TYPE B (E_value = );-49% similar to PDB:1F31 CRYSTAL STRUCTURE OF CLOSTRIDIUM BOTULINUM NEUROTOXIN B COMPLEXED WITH A TRISACCHARIDE (E_value = );-49% similar to PDB:1G9A CRYSTAL STRUCTURE OF CLOSTRIDIUM BOTULINUM NEUROTOXIN B COMPLEXED WITH AN INHIBITOR (EXPERIMENT 3) (E_value = );-49% similar to PDB:1G9B CRYSTAL STRUCTURE OF CLOSTRIDIUM BOTULINUM NEUROTOXIN B COMPLEXED WITH AN INHIBITOR (EXPERIMENT 1) (E_value = );","","","Residues 257 to 435 (E-value = 2.1e-09) place PG0252 in the FtsX family which is described as Predicted permease (PF02687)","Sat Jun 2 17:18:02 MDT 2001","34540122","","","","","","1","","","PG0280" "PG0253","316113","314740","1374","ATGGTGCCGGAGGCTCGGGACAGAGGTTCTCCCCTTCCCATTCGGACGCCTTCCGCATCCATCGAAATAACCGCACAAGAGACAGAAACAATGAAAAGATATATCAGACAATCGTGGCAAATCATCCGGCAGAATCCGGTGCTCAGCGTTATCGGCATTATCGGTACGGCCTTTGCCATTTGTATGGTCATGGTACTGGTGCAGCAAGAGTATATGAAGGTGGGAAAGTTCTCGCCCGAAAGCAATCGTTCGCGCTGGTTGGTGACCCGAGGTGCCACCATGACGACGAAGGATACAACGAGAAACATGACCATGAATACCAACTTGGGTGGGTATCAGGTATTAGAGATATTCCGCAAGCTCGAAACACCCGAAGCCGTAACGGCTTTCGAGGGACTTTCCATACCTGAGCCGGGCCTTGAACCGCGCTTCTGCGTACGCGAAGGCGAGCAGGAAGTCCCCGTTACGACGAGATATACGGACGAGGCTTTCTGGCAGGTGTTCGATTTTTCTTTCGTCGCCGGCAAGCATTATACCGAGGCGGATGCCCGATCGAACATCGCCGTGGCAGTCATTACCGACAGGTTGGCGCGCCGGTTCTTCGGCTCTTCGAGCGAGGCCGTCGGCCGGCAAGCTCTGATCAATGGGCGCAAATACACCGTCTGCGGAGTGGTGCGCCATGTGACCCCTTTCTGCGACTTCGCTTACGGAGATGTGTGGATGCCTGTGTTCAGGCTGTACGAAGAAAGAGTGAAGAACAACCTATTCTCCAGATTCAATGTAATCTGTCTGGCCAAAAGCCCGAAGGACTTCGATGCCATCAAGGAAGAAGTCGGGGCCTTGACTGCCAAGTGCAATAGTGTGCAGGAGAAGTTCAATATCAGTTTTCCCGGCCAGCCTGCCGATCAGTTCACGACGATGCACCGCAAATTTCACCGTGACGATACCGAACCTCTGGAGTATCGCCGTCGCTTCATTCTCCTCCTGGCAGTGTTTCTGTGCATCCCGGCCATCAATCTTTCGGGTATGACCCTTAGCCGTATGCGTCGCCGTTTGGCCGAATTGGGCGTACGACGCTCTTTCGGAGCCGTCCGATCCGATATAGTCCGCCAAGTGCTGGCAGAGAATATGCTGATCAGTCTGATAGGAGGGGCTTTCGGATTGCTTTTGAGTTATCTGGTCATGGCCCTCTTTCCCTCGTGGCTCCTCAGCGTGGGGAGCCGGGGAATGATGCAGGGCGACATCAACGGAGCCATGTTCAATCCCGTCATTTTCCTGATAGCTCTCGTCTTCTGTGTGCTGATCAATCTGCTCAGTGCCTTTATCCCTGCCTGGCGCATATCCAAGACACCCATCGTAGAATCCCTCTCCCAC","9.80","11.85","51712","MVPEARDRGSPLPIRTPSASIEITAQETETMKRYIRQSWQIIRQNPVLSVIGIIGTAFAICMVMVLVQQEYMKVGKFSPESNRSRWLVTRGATMTTKDTTRNMTMNTNLGGYQVLEIFRKLETPEAVTAFEGLSIPEPGLEPRFCVREGEQEVPVTTRYTDEAFWQVFDFSFVAGKHYTEADARSNIAVAVITDRLARRFFGSSSEAVGRQALINGRKYTVCGVVRHVTPFCDFAYGDVWMPVFRLYEERVKNNLFSRFNVICLAKSPKDFDAIKEEVGALTAKCNSVQEKFNISFPGQPADQFTTMHRKFHRDDTEPLEYRRRFILLLAVFLCIPAINLSGMTLSRMRRRLAELGVRRSFGAVRSDIVRQVLAENMLISLIGGAFGLLLSYLVMALFPSWLLSVGSRGMMQGDINGAMFNPVIFLIALVFCVLINLLSAFIPAWRISKTPIVESLSH","316113 314740","See ABC Transporters Analysis.TIGR ID: PG0281","conserved hypothetical protein(possible ABC permease with MSD domain)","Inner membrane, Cytoplasm","Residues 138 to 457 share 21% identity with gb|AAC73966.1| (AE000189), a putative ATP-binding component of a transport systemin Escherichia coli K12.Residues 147 to 381 share 21% identity with gb|AAC24912.1| (AF012285), YknZ in Bacillus subtilis.Residues 185 to 456 share 25% identity with gb|AAB98792.1| (U67524), a hypothetical protein in Methanococcus jannaschii.","
InterPro
IPR003838
Domain
Protein of unknown function DUF214, permase predicted
PF02687\"[258-452]TFtsX


","BeTs to 10 clades of COG0577COG name: Predicted permeaseFunctional Class:  RThe phylogenetic pattern of COG0577 is AMt--QVcEBRHuj--OLinxNumber of proteins in this genome belonging to this COG is 8","***** BP03665 (PROTEIN TRANSMEMBRANE CONSERVED MEMBRA) with a combined E-value of 4.3e-10. BP03665B 331-385 BP03665C 432-458","Residues 325-457 are 28% similar to a (PROTEIN TRANSMEMBRANE MEMBRANE CONSERVED INTEGRAL CELL) protein domain (PD003665) which is seen in YBJZ_ECOLI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Fri Jun 15 22:37:18 MDT 2001","Sat Jun 2 17:17:13 MDT 2001","Thu Mar 1 14:38:28 MST 2001","Thu Mar 1 14:38:28 MST 2001","Thu Mar 1 14:38:28 MST 2001","Thu Mar 1 14:38:28 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 13 to 454 share 22% identity with PG0615, a possible permease.","Thu Mar 1 14:38:28 MST 2001","Thu Mar 1 14:38:28 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 258 to 452 (E-value = 4.7e-19) place PG0253 in the FtsX family which is described as Predicted permease (PF02687)","Sat Jun 2 17:17:13 MDT 2001","34540123","","","","","","1","","","PG0281" "PG0254","317005","316337","669","ATGGATGCAATCAAACTGACCAACGTGAGTCGCATCTTCCGTGCCGGCCTGATGGAAACGGCCGCTTTGGAGGATATCAACATCAGCGTAAACGGCGGCGAGTTCCTTTCCGTCATGGGACCGAGCGGATGCGGCAAGAGTACGCTCCTCAACGTCATGGGTCTGCTGGACCGTCCTACCACGGGGACGGTGGAAATCCTCGGACAAACGGTACACTCCATGAACGACAAGGCTTTGGCCGCTTTCCGCAATGAAAAGCTGGGATTCGTATTTCAGAGTTTTCATCTCGTCAATACGCTCAACGTGCTGGACAACGCCATGCTGCCGCTCCTCTATCGCCGCATGAGCGAAAGTAAAAGGAGGAAGGCGGCGTACGAAGTCCTCGAGCGCATGGAAATGACGCATCGGCTGCGCCATTATCCCCAACAGCTCTCCGGAGGTCAATGCCAACGCGTGGCCATTGCCCGCGCCATTGTAGGCAATCCCGAGATTATCCTCGCAGACGAACCTACCGGTAACCTCGATTCCAAAATGGGGGCGGAAGTAATGAGTATCCTTCATCGGCTCAATACAGAGGACGGACGTACCATCGTCATGGTCACTCACAACGAATTGCAAGCCCGGGAGACGAGCCGGACCATCCGAATGTTCGACGGGCATCAGGTAGGT","8.20","2.59","24754","MDAIKLTNVSRIFRAGLMETAALEDINISVNGGEFLSVMGPSGCGKSTLLNVMGLLDRPTTGTVEILGQTVHSMNDKALAAFRNEKLGFVFQSFHLVNTLNVLDNAMLPLLYRRMSESKRRKAAYEVLERMEMTHRLRHYPQQLSGGQCQRVAIARAIVGNPEIILADEPTGNLDSKMGAEVMSILHRLNTEDGRTIVMVTHNELQARETSRTIRMFDGHQVG","317005 316337 [Shorter 336 660 99]","See ABC Transporters Analysis.TIGR ID: PG0282","ABC transporter/ATP-binding protein","Cytoplasm, Inner membrane","Residues 4 to 222 share 52% identity with gb|AAB99520.1| (U67591), an ABC transporter, probable ATP-binding subunit in Methanococcus jannaschii.Residues 4 to 222 share 47% identity with gb|AAF94722.1| (AE004234), an ABC transporter, ATP-binding protein in Vibrio cholerae.Residues 4 to 219 share 49% identity with gb|AAB98791.1| (U67524), an ABC transporter, ATP-binding protein in Methanococcusjannaschii.This region shares strong identity with an extremely large number of additional bacterail ABC transporter/ATP-binding proteins.","
InterPro
IPR003439
Domain
ABC transporter related
PD000006\"[143-186]TABC_transporter
PF00005\"[33-219]TABC_tran
PS00211\"[144-158]TABC_TRANSPORTER_1
PS50893\"[4-222]TABC_TRANSPORTER_2
InterPro
IPR003593
Domain
AAA+ ATPase, core
SM00382\"[32-220]TAAA
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[1-222]TG3DSA:3.40.50.300
PTHR19222\"[4-219]TPTHR19222
PTHR19222:SF32\"[4-219]TPTHR19222:SF32
SSF52540\"[4-222]TSSF52540


","BeTs to 14 clades of COG1136COG name: ABC-type (unclassified) transport system, ATPase componentFunctional Class: RThe phylogenetic pattern of COG1136 is AMt--QVCEBRHUJGPOLinxNumber of proteins in this genome belonging to this COG is 3","***** IPB001617 (ABC transporters family) with a combined E-value of 5.2e-15. IPB001617A 38-53 IPB001617B 145-156","Residues 86-222 are 27% similar to a (PROBABLE ABC TRANSPORTER ATP-BINDING) protein domain (PD133073) which is seen in Y4MK_RHISN.Residues 23-74 are 55% similar to a (ATP-BINDING TRANSPORT PROTEIN TRANSPORTER ABC) protein domain (PD000005) which is seen in YF08_METJA.Residues 143-186 are 79% similar to a (ATP-BINDING TRANSPORT PROTEIN TRANSPORTER ABC) protein domain (PD000006) which is seen in YF08_METJA.Residues 80-141 are 45% similar to a (ATP-BINDING TRANSPORT PROTEIN TRANSPORTER) protein domain (PD007972) which is seen in YF08_METJA.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Fri Jun 15 22:36:18 MDT 2001","Thu Mar 1 14:33:36 MST 2001","Thu Mar 1 14:33:36 MST 2001","Wed Apr 25 18:41:36 MDT 2001","Thu Mar 1 14:33:36 MST 2001","Thu Mar 1 14:33:36 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 4 to 419 share 52% identity with PG0618, an ABC transport component; ATPase component.Residues 10 to 219 share 40% identity with PG1477, an ABC transporter ATPase.Residues 4 to219 share 31% identity with PG1211, an ABC transporter (exact function unknown).","Thu Mar 1 14:33:36 MST 2001","Thu Mar 1 14:33:36 MST 2001","-68% similar to PDB:1F3O Crystal structure of MJ0796 ATP-binding cassette (E_value = 9.2E_54);-68% similar to PDB:1L2T Dimeric Structure of MJ0796, a Bacterial ABC Transporter Cassette (E_value = 2.1E_53);-63% similar to PDB:1OXS Crystal structure of GlcV, the ABC-ATPase of the glucose ABC transporter from Sulfolobus solfataricus (E_value = 3.3E_35);-63% similar to PDB:1OXT Crystal structure of GlcV, the ABC-ATPase of the glucose ABC transporter from Sulfolobus solfataricus (E_value = 3.3E_35);-63% similar to PDB:1OXU Crystal structure of GlcV, the ABC-ATPase of the glucose ABC transporter from Sulfolobus solfataricus (E_value = 3.3E_35);","","","Residues 33 to 219 (E-value = 3.5e-56) place PG0254 in the ABC_tran family which is described as ABC transporter (PF00005)","Wed Apr 25 18:41:36 MDT 2001","34540124","","","","","","1","","","PG0282" "PG0257","318335","317088","1248","ATGGACAGACAAGTTTCGCCCGAACGGCTCAAACGTGAAAAGCAAAGACGTTACCTCATCATAACAGCTTCGGCAGTCCTTCTCTTCTTAGGCGGATGGTGGTTGCTCTCCTCCATCCAAGGCTCCATATCCGCAGCCTCTCTGCGTTTGGGGCGGGTGGACAAAGGAGAAGTGCAGATCGCTACCTCGGCTTCCGGCGAAGTGGTGCCGGCTTTCGAGGAGATCATCACTTCGCCGGTGCAGGCGCGTCTGATAGCTGTGCTCAAGCATGCAGGCGATTCGGTACACCGAGGTGAACCCTTGTTGGAACTGGACTTGCAGTCCGTGCGCACGGAGTTCGAGAAATTGCAGGACGAACTGCGGATGAAGCAGACCCAACTGCATCGGCAGGAAGTACAACTCCGCGGAGAACTCAACGCCAAGCGACGCGAACTCAAGGTCAAAGCCATGCAGAACGACCGCCGAAGAGCAGAGCTCCAGAGCGAAAGGTATTTGGATAGCATCGGAGCAGGTACAACGGATAAGGTACGCGAAATAGAGCTGGCCAATCGTGTGGCAGCACTCGAATACGAGGGTATGGTGGAAAACCTGCGCGATCGTGAGGCCACGGCTGCTGCCGAACAGGCTACTGCCCGGCTGGAAATAGAGATTTTCAGGAAAACTTTGGAGGAGAAACGCCGTCAGCTGGATGATGCCCGGATAGCTTCTCCTCGTGACGGAGTGCTCACTTTCGTACTCAGCGAGGTGGGTACGCTTATCGGTGCAGGTTCTCAAGTGGCCACCGTGAGCGATCCGAAGCACTTCCGTATTCAGGCCGACATAGCGGACGACTATGCCCAACGCCTCTCGGTCGGTGCCAAAGCGGTGGTAAATCTCGACGGCCGTCGTATAGAAGGAACGGTGACGAACATCACTCCTGCTGCCAAGAACGGGGTGGTACGCTTCTATGTGGGATTGTCGGCAGACGAGACGTACGCACTGCGTTCGGGCTTGAAAGTCAGCGTCTATGTGCTCACGGCTCTCAGAAACGAATGTGTGCGGATCCCCTTCGGCAATTACTATCACGGCGAAGGTCTGTATGAAATGTACGTACGCCGGGGCAGTACGCTGGTACGTCGGGAGGTGCGTCTGGGCGGAAGCGGCGAATCGTTCGTGGAGGTCATGTCCGGTCTCGAACCCGGCGAAGAGGTCGTACTCCAGACCCTGGATGCAGCATTCCGCAATAGCAAGAAGATCAAGCTGAAAGAC","9.70","5.21","46437","MDRQVSPERLKREKQRRYLIITASAVLLFLGGWWLLSSIQGSISAASLRLGRVDKGEVQIATSASGEVVPAFEEIITSPVQARLIAVLKHAGDSVHRGEPLLELDLQSVRTEFEKLQDELRMKQTQLHRQEVQLRGELNAKRRELKVKAMQNDRRRAELQSERYLDSIGAGTTDKVREIELANRVAALEYEGMVENLRDREATAAAEQATARLEIEIFRKTLEEKRRQLDDARIASPRDGVLTFVLSEVGTLIGAGSQVATVSDPKHFRIQADIADDYAQRLSVGAKAVVNLDGRRIEGTVTNITPAAKNGVVRFYVGLSADETYALRSGLKVSVYVLTALRNECVRIPFGNYYHGEGLYEMYVRRGSTLVRREVRLGGSGESFVEVMSGLEPGEEVVLQTLDAAFRNSKKIKLKD","318422 317088 [Shorter 337 1158 99]","TIGR ID: PG0283","membrane permease","Outer membrane, Periplasm, Inner membrane, Cytoplasm","Several weak hits using gapped BLAST to hypothetical proteins and proteins of several possible functions. Residues 53-400 are 21% similar to AE000682, a hypothetical protein of Aquifex aeolicus. Residues 59-405 are 20% similar to gb|AAC06871.1| (AE000702), a acriflavin resistance protein AcrE in Aquifex aeolicus.Residues 11-399 are 20% similar to AE005269, a putative membrane protein in Escherichia coli O157:H7.","
InterPro
IPR006143
Family
Secretion protein HlyD
TIGR01730\"[106-414]TRND_mfp
noIPR
unintegrated
unintegrated
SSF111369\"[59-131]TSSF111369


","BeTs to 4 clades of COG0845COG name: Membrane permeases, predicted cation efflux pumpsFunctional Class: RThe phylogenetic pattern of COG0845 is -----QvCEB-hUJ--ol--xNumber of proteins in this genome belonging to this COG is 6","***** IPB002215 (HlyD family secretion protein) with a combined E-value of 4.8e-07. IPB002215A 70-106 IPB002215B 233-267","No significant hit to the ProDom database.","","Thu Jun 14 10:38:11 MDT 2001","","Thu Jun 14 10:38:11 MDT 2001","Thu Jun 14 10:38:11 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 10:38:11 MDT 2001","Thu Jun 14 10:38:11 MDT 2001","","","Thu Mar 1 14:24:37 MST 2001","Tue Jun 19 14:49:07 MDT 2001","Wed Apr 25 19:07:42 MDT 2001","Tue Jun 19 14:49:07 MDT 2001","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1 to 403 are 24% similar to PG0612, a possible membrane permease. Residues 234 to 398 are 24% similar to PG0056, a cation efflux membrane fusion protein. Residues 229 to 398 are 23% similar to PG0492, a cation efflux membrane fusion protein.","Tue Jun 19 14:49:07 MDT 2001","Thu Mar 1 14:24:37 MST 2001","-48% similar to PDB:1I84 CRYO-EM STRUCTURE OF THE HEAVY MEROMYOSIN SUBFRAGMENT OF CHICKEN GIZZARD SMOOTH MUSCLE MYOSIN WITH REGULATORY LIGHT CHAIN IN THE DEPHOSPHORYLATED STATE. ONLY C ALPHAS PROVIDED FOR REGULATORY LIGHT CHAIN. ONLY BACKBONE ATOMS PROVIDED FOR S2 FRAGMENT. (E_value = );-62% similar to PDB:1GXJ SMC HINGE DOMAIN FROM T. MARITIMA W/O COILED COIL (E_value = );-62% similar to PDB:1GXK SMC HINGE DOMAIN FROM T. MARITIMA W/O COILED COIL, P212121 CRYSTAL FORM (E_value = );-62% similar to PDB:1GXL SMC HINGE DOMAIN FROM T. MARITIMA WITH COILED COIL (E_value = );-40% similar to PDB:2E7S Crystal structure of the yeast Sec2p GEF domain (E_value = );","","","No significant hits to the Pfam 11.0 database","Tue Jun 19 14:49:07 MDT 2001","34540125","","","","","","1","","","PG0283" "PG0258","318334","318582","249","ATGAATCGTTTTCTTTTTTCCGGTGCGAGCTTTGTTGCTCGCCGCCTTCCGAAGAGCAAATGCCATGCCAAACAATCCCCTGCCCTCATTATCAGTCACTTATTCGATTGGCCGAAGTGTCCACTGTCCGTTTTCGGACAGTTCGGGTGTTCGTTTCCGAACAGTCGGACACTTCGCCATCGGAGAAAACTTGCATATTATCAGCCTTTTAAGGGTAGCGGCATAAACTTTGCTGTCGGAAAGGTGCAA","11.70","13.55","9415","MNRFLFSGASFVARRLPKSKCHAKQSPALIISHLFDWPKCPLSVFGQFGCSFPNSRTLRHRRKLAYYQPFKGSGINFAVGKVQ","318304 318582 [Shorter 338 119 57]","TIGR ID: PG0284","hypothetical protein","Periplasm, Extracellular","No hit found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 10:38:54 MDT 2001","","Thu Jun 14 10:38:54 MDT 2001","Thu Jun 14 10:38:54 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 10:38:54 MDT 2001","Thu Jun 14 10:38:54 MDT 2001","","","","","Thu Jun 14 10:38:54 MDT 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Jun 14 10:38:54 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Jun 14 10:38:54 MDT 2001","","","","","","","1","","","PG0284" "PG0259","318599","320101","1503","ATGAAGAAAAAAAGCCTTTTCCTCCTCTCCCTCTGCTTCGCCTCCCTGGGTCCGACTCCATGGAGCGAGGTTTCGGCACAGCAGGTTGCCGCCGCGGATCCATCCCCTTTGTCCCTCACGGAAGCCATCCGGTTGGCACGAAAGCAGAGCGTGGATGCAGCCGTGGCACTGCAAGAGCTTCGAGCGGCCTACTGGCAGTGGCGCACCTATCGGGCAGAATTGCTGCCCGGAGTGAACTTGACAGCCACACTGCCGGACTACAGGCGTGCCTATTCGCTCTATCAGCAGCCGGACGGCTCTTACAGCTTCGTCCGCTCCAATGCTCTGCGCCTGTCAGGACATATATCCGTGGATCAGAATATATGGCTTACGGGTGGCAAGCTCTCTTTGGTGAGTTCGCTCGAGCATATCAATCCGCTCGGCACGGAAGGAGCTGACAGGCATTTCATGAGCGTACCGATCAGCCTGACCCTGAGCCAACCGCTCTTCGGACTGAACGAAATGAAATGGAGTCGCCGCATAGAACCCGTGCGTTACGAAGAGGCTCGCCGGCGATTCGTCGCCAATACGGAGGAGGTGAGCGTAAGCTGTATAGATCATTACTTTTCGGCCCTGCTGGCACGGGAAGAGTACAACAATGCGGAGACCAACCTCCGTAACACGGCGAAGCTGGTCGAAGTGGCGCGTGCCAAAAAGAAGATCGGGAAGTTGTCCGAAAACGAATTGCGAGCCGTGGAGATCAGCTACGCTTCGGCTTCTTCGGCAATTCTTTCGAGCCGTACAGCCCTGCGCGGAGCGGAGATGTCCCTGAGCATTTTCCTCGGTTTGCAGCCGGATGAAGTCCTCTCCCTCTCTATACCGGCCGATACGATCTTCACACCCGTGAGCTATGAACGGGTGATGGAGTTGGCCGGACGCAATCATCCGTTCGTCGGAGAGATGAAGCGCAGGATGCTCGAAGCCGATCGTTCTCTGGCCCGAGCCAAATCCGAACGCTTCTCCATCGAACTGATGGCCCAAATCGGATATGCCGGACAGGCGGACAATCTGCACGATGCATACGGCGGACGTCTGAAGGACAACAGCTCTGTCTCCGTAGGCGTGCGCATTCCTCTCGTGGATTGGGGGCGCGGACGCGGTCGGATACGCTTGGCCGAGAGCAACCGCCGTCTCGAAGAGCATCGACTGCGACAGGAAGAAGAGCGTTGGCACCGGCAGATATTCCTGCTGGTGGAGAAACACAACAACCAACTTCGCATCCTCGAATTGGCACGTCGTACCGACAGTATCGCTCAGGCGCGCTATCATACTGCCGTGGAAACCTTCACCGTCGGGGCTATTTCCACCCTCGATCTGAATGCGGCACAGGATGCCAAGGACCTGGCGCGTACCTCGCTCGTCAGAGCATTGCATCACTATTGGAGCTACTACTACAATCTGCGTAGCCTGACGGCCTATGATCCGGTACGCGATGAGGAGATCGATATACCCATGGAAGAACTA","9.40","6.84","56728","MKKKSLFLLSLCFASLGPTPWSEVSAQQVAAADPSPLSLTEAIRLARKQSVDAAVALQELRAAYWQWRTYRAELLPGVNLTATLPDYRRAYSLYQQPDGSYSFVRSNALRLSGHISVDQNIWLTGGKLSLVSSLEHINPLGTEGADRHFMSVPISLTLSQPLFGLNEMKWSRRIEPVRYEEARRRFVANTEEVSVSCIDHYFSALLAREEYNNAETNLRNTAKLVEVARAKKKIGKLSENELRAVEISYASASSAILSSRTALRGAEMSLSIFLGLQPDEVLSLSIPADTIFTPVSYERVMELAGRNHPFVGEMKRRMLEADRSLARAKSERFSIELMAQIGYAGQADNLHDAYGGRLKDNSSVSVGVRIPLVDWGRGRGRIRLAESNRRLEEHRLRQEEERWHRQIFLLVEKHNNQLRILELARRTDSIAQARYHTAVETFTVGAISTLDLNAAQDAKDLARTSLVRALHHYWSYYYNLRSLTAYDPVRDEEIDIPMEEL","318563 320101","TIGR ID: PG0285","conserved hypothetical protein; possible outer membrane protein","Outer membrane, Cytoplasm","Its nearest neighbor in the NR database is gi:29346940 from Bacteroides thetaiotaomicron VPI-5482.","
noIPR
unintegrated
unintegrated
SSF56954\"[37-484]TSSF56954


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 10:38:42 MDT 2001","","Thu Jun 14 10:38:42 MDT 2001","Thu Jun 14 10:38:42 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 10:38:42 MDT 2001","Thu Jun 14 10:38:42 MDT 2001","","","Tue Mar 1 14:44:02 2005","Tue Mar 1 14:44:02 2005","Thu Mar 1 14:19:48 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 146-486 are 19% similar to PG1455, immunoreactive 51kD antigen PG52, and residues 37-469 are 20% similar to PG0083, conserved hypothetical protein.","Tue Jun 19 14:52:21 MDT 2001","Tue Mar 1 14:44:02 2005","-48% similar to PDB:1EJ6 Reovirus core (E_value = );-48% similar to PDB:2CSE Features of Reovirus Outer-Capsid Protein mu1 Revealed by Electron and Image Reconstruction of the virion at 7.0-A Resolution (E_value = );-52% similar to PDB:1TLT Crystal Structure of a Putative Oxidoreductase (VIRULENCE FACTOR mviM HOMOLOG) (E_value = );","","","No significant hits to the Pfam 11.0 database","Tue Jun 19 14:52:21 MDT 2001","34540126","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Tue Mar 1 14:49:50 2005","","1","","","PG0285" "PG0260","320257","320511","255","ATGCTAAGTATTATTGGACAAAAAACTCTAACCATTATGTACTGGACATTAGAATTAGCCTCCAAATTGGAAGATGCTCCTTGGCCTGCAACCAAAGATGAGTTGATAGACTATGCACAACGTTCGGGTGCTCCTCTTGAAGTCATCGAGAATCTGCAGGAAATGGAAGATGAAGGGGAAATCTACGAATCGATAGAAGATATTTGGCCGGATTATCCGAGCAAAGAGGATTTTTTCTTCAACGAAGAAGAGTAC","3.60","-17.00","9996","MLSIIGQKTLTIMYWTLELASKLEDAPWPATKDELIDYAQRSGAPLEVIENLQEMEDEGEIYESIEDIWPDYPSKEDFFFNEEEY","320257 320511 [Shorter 343 198 99]","TIGR ID: PG0286","conserved hypothetical protein","Cytoplasm","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-25]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Sep 10 15:29:24 2004","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Sep 10 15:29:24 2004","-51% similar to PDB:1BQB AUREOLYSIN, STAPHYLOCOCCUS AUREUS METALLOPROTEINASE (E_value = );-53% similar to PDB:2I5T Crystal Structure of hypothetical protein LOC79017 from Homo sapiens (E_value = );-48% similar to PDB:1BH5 HUMAN GLYOXALASE I Q33E, E172Q DOUBLE MUTANT (E_value = );-48% similar to PDB:1FRO HUMAN GLYOXALASE I WITH BENZYL-GLUTATHIONE INHIBITOR (E_value = );-48% similar to PDB:1QIN HUMAN GLYOXALASE I COMPLEXED WITH S-(N-HYDROXY-N-P-IODOPHENYLCARBAMOYL) GLUTATHIONE (E_value = );","","","No significant hits to the Pfam 11.0 database","","34540127","","","","","","1","","","PG0286" "PG0261","320583","320314","270","GTGGTAAAACGAAGCCCCGAGTGCTATTATTGCACATCCGGGGCATATTCGCTTAAGGAGATTACATTATCAGTACTCTTCTTCGTTGAAGAAAAAATCCTCTTTGCTCGGATAATCCGGCCAAATATCTTCTATCGATTCGTAGATTTCCCCTTCATCTTCCATTTCCTGCAGATTCTCGATGACTTCAAGAGGAGCACCCGAACGTTGTGCATAGTCTATCAACTCATCTTTGGTTGCAGGCCAAGGAGCATCTTCCAATTTGGAGGC","9.50","5.03","10719","VVKRSPECYYCTSGAYSLKEITLSVLFFVEEKILFARIIRPNIFYRFVDFPFIFHFLQILDDFKRSTRTLCIVYQLIFGCRPRSIFQFGG","320583 320314 [Bad Olap 342 198 0]","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No hit found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","-52% similar to PDB:1X62 Solution structure of the LIM domain of carboxyl terminal LIM domain protein 1 (E_value = );","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG0262","320597","321535","939","TTGCATAAATCTTTCCGTTCGCTCATTTTGCTCCTGCTCCTGACCGTGGCCGGGGGAGAGGATATTTTCGCTCAGGGCGATTTATTGCTGGCTCAGTACACCCGTGCATACGGCTACTACAATCCGGCTTATGCCGGTATGCGCAAAGAGATTTTCATTACTGCGCTGCACAATAGACAATGGGAAGGCATGCCCCGAAGTCCTAAGAGTTTCGTCGTACTGGCCGATGCGCCTATTCGCTTCTTCGACAGAGAGCATGGAGTGGGAGTTCGGGTAGTGACCGAAACGAGAGGACTCTTTGCCATCAATGAGCTGATGGGGCAATATGCCTTCAAACAGAAACTCTTCGGCGGAGATCTGTCCGTCGCCCTCCAAGCCGGACTCGTCAATACGGCTTTCGATGGCACCAAGGTGGAGCTCGAGACGGAGAACGATCCGGCCATCCCCCTTACCAAAGTGAGCGGAAAGGCCTTCGACATCGGTGCAGGTATATACTACCGCCGCAAAGAATTGTACGTCGGATTCAGCTCTACCCATCTGACCGCTCCGGCAATTCCGCTCAATGAACAGTACATATTAGATCTGACAAGGCATTATTATCTCCTTGCCGGATACAATATCCGCTCCATTTATTCGTTATTTGCATGGCATCCTTCTATCTTTGCAGCTACTGACGGGCACAGTTCTCGTTTGGACGTGACGATGGGAATGTCATACAACAACCGCTTCTTTGCCTCACTGATGTATCGTCCCACACAAGCCGTGGGAGTGAGCTTGGGGATGCAGTTGGGCAAGTTCTATGCCGGCTATGCTTTCGAGTGGCCGACATCGGTACTGGCTAAAGCCTCATGGGGAAGCCACGAATTGCTGGTCAGCTATTCTTTCCCATTGAGCAATACGAAGAATAGAGATGCAAAGTATAAAAGCATTCGTTTCCTC","10.20","8.92","35118","LHKSFRSLILLLLLTVAGGEDIFAQGDLLLAQYTRAYGYYNPAYAGMRKEIFITALHNRQWEGMPRSPKSFVVLADAPIRFFDREHGVGVRVVTETRGLFAINELMGQYAFKQKLFGGDLSVALQAGLVNTAFDGTKVELETENDPAIPLTKVSGKAFDIGAGIYYRRKELYVGFSSTHLTAPAIPLNEQYILDLTRHYYLLAGYNIRSIYSLFAWHPSIFAATDGHSSRLDVTMGMSYNNRFFASLMYRPTQAVGVSLGMQLGKFYAGYAFEWPTSVLAKASWGSHELLVSYSFPLSNTKNRDAKYKSIRFL","320585 321535","TIGR ID: PG0287","hypothetical protein","Outer membrane, Cytoplasm","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-19]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 10:39:22 MDT 2001","","Thu Jun 14 10:39:22 MDT 2001","Thu Jun 14 10:39:22 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 10:39:22 MDT 2001","Thu Jun 14 10:39:22 MDT 2001","","","","","Thu Jun 14 10:39:22 MDT 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Jun 14 10:39:22 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Jun 14 10:39:22 MDT 2001","34540128","","","","","","1","","","PG0287" "PG0263","321595","323067","1473","ATGTGTAGAAAGAACAGGTTTTTCGCTCTTGCAGGCTTTTTTCTGTTTGGAGTTTTCACTATTTCGTCGTGCGGCTCTTCCAAACGGGCTGTTGGCGGTGAACTGACCGGTGCCAAGCTATCTTCATGGAATGAGCCATCGCCTTTCGGGATGATACAGGTTCCCCGAGGGAGTATTGTGTTGGGCAACAAAGAGGCAGACAGCTTATGGGGCATACCTGCCGAATCGCGCCCTATATCTGTGGATGCTTTTTGGATGGATCGGACGGAGATCACCAATGCCCAATACCGGCAGTTTGTCTACTACGTTCGGGACTCCATCATCCGCGAACGTCTGGCCGATCCTGCATACGGCGGCAACGAAGAATACAAGATTACCGAGAATAAGTTCGGCGAACCCGTAACTCCTCATTTGGATTGGAGCAAACCTATTCCTTCCGAAAAGCGGGCTACCGAAGAAGAAATAGCTGCCATCAACAGCGTTTACTATACCAATCCCGTCACTCATGATCGAAAGCTCAATCCGGATCAAATGGTCTATCGGTACGAAGTCTACGATTATCGTTCGGCAGCTTTGCGCGAGCATCAGCTCAAGGCCGCAAAGCGCAATCTGAATACGGACATCAAGGTAGACCCCAACGCCGTAGTGATGATATCGAAAGACACGGCTTTCGTAGACGAAAGCGGCAATATCATCAGCGAAACCATTACGCGTCCGCTTAGCAGCGAATACGATTTTCTCAACACATACATCGTACCGATCTATCCCGATGAGACCTGCTGGGTAAATGATTTCCCCAATGCTCGTACCGAGATTTATACGAGAATGTATTTCAATCACCCGGGCTACGATGATTATCCCGTAGTAGGTATTTCATGGGAACAGGCTCAGGCGTTCTGTGCGTGGCGGTCGGAATTCTTCCGCAAAGGTATTCGCTTGCCTGAAGGACAGATCATGGACGACTTCCGTCTGCCCACTGAAGCCGAATGGGAATATGCTGCCCGAATGGGCGATTCCAACAATAAATATCCCTGGAGTACCGAAGACTTGAGGACAGGACGGGGTTGTTTCTTGGGCAACTTCAAGCCCGGGGAGGGAGATTATACGGCTGACGGTCATTTGATACCGTCCCGCGTATCCAGTTTTTCGCCCAATGACTTCGGCTTGTACGATATGGCGGGCAATGTGGCCGAATGGACCAGCACGGCATTTTCGGAGTCCGGACTCAAACAAATGTCGGACATCAATCCCGAACTGGAATACAAAGCTGCGCTCACGGATCCGTACATCCTGAAGCAAAAGGTAGTACGCGGTGGTTCGTGGAAAGATGTGGCCCGCTTCATCCGCTCGGCTACTCGTAGCCATGAATACCAGAACGTAGGTCGTTCCTATATCGGATTCCGTTGTGTACGTACTTCCATTGCCTTCTCTTCCGGAAAGGCTCCTAAGAGTTCGCGTCGCAGCACAAAGAAA","6.80","-0.79","55890","MCRKNRFFALAGFFLFGVFTISSCGSSKRAVGGELTGAKLSSWNEPSPFGMIQVPRGSIVLGNKEADSLWGIPAESRPISVDAFWMDRTEITNAQYRQFVYYVRDSIIRERLADPAYGGNEEYKITENKFGEPVTPHLDWSKPIPSEKRATEEEIAAINSVYYTNPVTHDRKLNPDQMVYRYEVYDYRSAALREHQLKAAKRNLNTDIKVDPNAVVMISKDTAFVDESGNIISETITRPLSSEYDFLNTYIVPIYPDETCWVNDFPNARTEIYTRMYFNHPGYDDYPVVGISWEQAQAFCAWRSEFFRKGIRLPEGQIMDDFRLPTEAEWEYAARMGDSNNKYPWSTEDLRTGRGCFLGNFKPGEGDYTADGHLIPSRVSSFSPNDFGLYDMAGNVAEWTSTAFSESGLKQMSDINPELEYKAALTDPYILKQKVVRGGSWKDVARFIRSATRSHEYQNVGRSYIGFRCVRTSIAFSSGKAPKSSRRSTKK","321595 323067","TIGR ID: PG0288","probable serine/threonine kinase","Outer membrane, Cytoplasm","This sequence is similar to CT145.Many weakly significant hits in gapped BLAST to conserved hypothetical/unknown proteins; e.g. residues 282-481 are 32% similar to AL450165 of Streptomyces coelicolor, residues 285-482 are 32% similar to BC006159 of Homo sapiens. Also several weak hits to s/t protein kinases; e.g. residues 281-471 are 32% similar to AE001601 of Chlamydophila pneumoniae, residues 281-471 are 30% similar to AE001288 of Chlamydia trachomatis.","
InterPro
IPR005532
Domain
Protein of unknown function DUF323
PF03781\"[47-471]TDUF323
noIPR
unintegrated
unintegrated
G3DSA:3.90.1580.10\"[50-470]TG3DSA:3.90.1580.10
PTHR23150\"[285-305]T\"[323-479]TPTHR23150
PTHR23150:SF5\"[285-305]T\"[323-479]TPTHR23150:SF5
PS51257\"[1-24]TPROKAR_LIPOPROTEIN


","BeTs to 4 clades of COG1262COG name: Uncharacterized BCRFunctional Class: SThe phylogenetic pattern of COG1262 is -------c-bR-----o-in-Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 281-471 are 32% similar to a (PROTEIN KINASE XYLR SERINE/THREONINE) protein domain (PD017761) which is seen in Q9Z935_BBBBB.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Mar 22 12:45:01 MST 2000","Wed Jun 6 09:40:36 MDT 2001","Wed May 23 16:07:35 MDT 2001","","Wed May 23 16:07:35 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed May 23 16:07:35 MDT 2001","-44% similar to PDB:1Y4J Crystal structure of the paralogue of the human formylglycine generating enzyme (E_value = 9.4E_19);-45% similar to PDB:2AFT Formylglycine generating enzyme C336S mutant (E_value = 1.4E_17);-45% similar to PDB:2AFY Formylglycine generating enzyme C341S mutant (E_value = 1.4E_17);-45% similar to PDB:2AIJ Formylglycine generating enzyme C336S mutant covalently bound to substrate peptide CTPSR (E_value = 1.4E_17);-45% similar to PDB:2AIK Formylglycine generating enzyme C336S mutant covalently bound to substrate peptide LCTPSRA (E_value = 1.4E_17);","","","Residues 47 to 471 (E-value = 1.4e-36) place PG0263 in the DUF323 family which is described as Domain of unknown function (DUF323) (PF03781)","Wed May 23 16:07:35 MDT 2001","34540129","","","","","","1","","","PG0288" "PG0264","323000","324037","1038","GTGTACGTACTTCCATTGCCTTCTCTTCCGGAAAGGCTCCTAAGAGTTCGCGTCGCAGCACAAAGAAATAAGTATCGCCAATCTATATTCAAAACAAGAAAAACAAGTATTATGGGTCATTATAGAAGATACAAGAACATCCTTGAGATGTATTTGGCCAGTCACAAAGGACGCCGACTTCTCAATATCGTTTATAGTTGGGGTGCTGCAGTGGTGATTTTGGGCGCTCTCTTCAAGTTGCTCCATTTGCCGATGGGCAATGAGATGCTTTTCGTGGGGATGATCACAGAATTCTTGGTGTTTTTTATCTCCGGATTTGAAAAACCCGCAATGGAATATCACTGGGAAGAGGTCTTCCCCGAACTGGACTCGAAGAATCCGATGGACCGTCGGGAGATGGAGCAGCGTCGGGAGTATCTTCGTGAAAAGGCCAAAGAAGCAGCTGCATACGCGGAAAGACCATCTTCTGTGCGCCTTGCCTCTGCCTCTTTGGGTACGCAACCGCAAGAACAGCCCAAGCCTGCCACTCCTTTCCAGTCCCAACTGACCGGAATACTGCCGGAAGAGCAGATCCAACGCCTGAGCGAAGGCATAGACAAACTGGCTGAAGCAGGCGAACAGCTTGCCCGTATCGGCCGGACTGCAGCCGCCATGACGGAGAGCTACGAGCAGATGCAAGCGGATCAGGAAGGCCTGCGTCTCAATTCGCAATCGTATATCCAGCAGATGGAAAGCCTCAGTCGCAATATCTCCGGCCTGAATACCATATACGAAATACAGCTCAAGGGCATCAGCTCCCAGATCGACACCATCGATCGCATCAACCGCGGATTGGCTCATATCCGAGATATGTATGACAATAGTGTCATCGACAGTTCTTCATTCCGCAACGAAAACGAGCGTATGGCACGCCAACTGACACAACTCAACGAGGTGTATGCTCGCTTGCTCCAAGCCTTGACAACGAATGTAGGTCTACCCGGTATGCCCGGCAATTTTGGTGCTTCTAATCCTTCATCATCCGGCAGCTCACCCTTA","10.00","5.23","39271","VYVLPLPSLPERLLRVRVAAQRNKYRQSIFKTRKTSIMGHYRRYKNILEMYLASHKGRRLLNIVYSWGAAVVILGALFKLLHLPMGNEMLFVGMITEFLVFFISGFEKPAMEYHWEEVFPELDSKNPMDRREMEQRREYLREKAKEAAAYAERPSSVRLASASLGTQPQEQPKPATPFQSQLTGILPEEQIQRLSEGIDKLAEAGEQLARIGRTAAAMTESYEQMQADQEGLRLNSQSYIQQMESLSRNISGLNTIYEIQLKGISSQIDTIDRINRGLAHIRDMYDNSVIDSSSFRNENERMARQLTQLNEVYARLLQALTTNVGLPGMPGNFGASNPSSSGSSPL","323000 324037","TIGR ID: PG0289","conserved hypothetical protein","Inner membrane, Cytoplasm","Its nearest neighbor in the NR database is gi:23136150 from Cytophaga hutchinsonii.","
noIPR
unintegrated
unintegrated
tmhmm\"[64-82]?\"[88-106]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Sep 10 13:46:37 2004","Tue Mar 1 15:39:03 2005","Thu Mar 1 14:17:27 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P.gingivalis.","Tue Mar 1 15:39:03 2005","Thu Mar 1 14:17:27 MST 2001","-45% similar to PDB:1EK9 2.1A X-RAY STRUCTURE OF TOLC: AN INTEGRAL OUTER MEMBRANE PROTEIN AND EFFLUX PUMP COMPONENT FROM ESCHERICHIA COLI (E_value = );-45% similar to PDB:1TQQ Structure of TolC in complex with hexamminecobalt (E_value = );-55% similar to PDB:1Z56 Co-Crystal Structure of Lif1p-Lig4p (E_value = );","","","No significant hits to the Pfam 11.0 database","Thu Mar 1 14:17:27 MST 2001","34540130","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Tue Mar 1 15:39:03 2005","","1","","","PG0289" "PG0265","324044","325591","1548","ATGGCAGTAGGTTCTAATGGGAATGCCAATAGGCAAAAGATGATCAACCTGATGTACCTCGTGTTCATCGCCATGATGGCTTTGAACGTATCGAGTGAGGTACTGGATGGTTTCGACAAAGTGGATAAGAGCTTAGCCTCTTCCATCGACGGCTCCGATAAGCGCAACAATCTGGTGCTGTCCGAGCTGAATACGGCTTATCGCACCAATCCCGAAAAGGTGAAAGTATGGTATGAGCGTAGCCTTGTCTTACAGAAAGAGGCAGATTCGCTCTGTACCTTTATAGATGATCTGAAGTTGGCCATTGCCCGTGAGTCGGATGGGAAAGATGCAAAAGTCAATGATATCAGACGAAAGGACAATCTCGATGCTTCTTCCGTAATAATGCTGAATCCGATCAACGGTAAAGGCAGCACACTTCGCAAGGAGGTGGACAAGTTCCGCGAGCTGGTCGCTACACTCATGACCGACAAGGCGAAGTTGAAACTCATAGAACAAGCCCTTAACACAGAATCCGGCACCAAAGGCAAATCTTGGGAAAGTTCTTTGTTCGAGAATATGCCTACTGTAGCAGCCATTACACTCCTGACCAAGCTCCAAAGCGATGTGCGTTATGCTCAGGGCGAAGTACTTGCCGATCTGGTAAAGAGCGTGGATGTGGGGGATTATCGTGTGAACAGTATCACGGCACAAGTGATTCCACAGAGCCAAATCGTCATGTCGGGCGATACATATAAGGCCAATATCGTCCTCTCCAGTGTAGATACCACGCAAAGACCGGACGTATTTGTAAACGGTAAGCTCCTTTCTCCCGAGAACATGGGCCTATTTACGGCTACGGCAGGTGCACCGGGCACATATCCGGTCAAAGGATATATCGAAATGATGGGTAACGATGGGGTTAAGATTCGCCGTGACTTTGAAAGCGAATACTTCGTTACGGAACCAATGGCCTCCGTTGCTCCGACGATGATGAACGTACTCTATGCCGGTATAGACAATCCGATCAATATCGCCGTACCGGGTGTGGCTCAGCAAAACGTTTCTGCAACGATCAACAATGGTACGCTCACTCGCCGTGGCAATCTCTGGATAGCACGGCCGACGAAAGTAGGCAGCGAAGCCATTATTTCCGTCACAGCTCAATCAGGAGGCCGTACCATCCAAATGGCAAAGACTACCTTACGTGTCAGAGCTCTCCCCGATCCTCTTCCCTATATCGAATATAAGGATGTGCAGGGGAACACGAAACGCTTCAAGGGTGGCCGTTTGGGTAAGCGTGAAATCCTGGCAGCAGGCGGCATTAAAGCCGCTCTTGACGATGATTTGCTGGAAGTAAACTACACAGTGGTGAAGTTCCAACTCGTATTCTATGATTCGATGGGCAACTCGATTCCCGAAGTTTCCGACGGAGCTTCATTCTCTGAGAGACAAAAACGACAAATACAGAATCTGGGCAAAGGCAAGCGTTTCTACGTAACAGAAGTAATTGCACGCGGTCCGGATGGTATCGAACGTAAGATTCCGGCCATTGAAGTAATTGTGAAC","9.60","4.99","56535","MAVGSNGNANRQKMINLMYLVFIAMMALNVSSEVLDGFDKVDKSLASSIDGSDKRNNLVLSELNTAYRTNPEKVKVWYERSLVLQKEADSLCTFIDDLKLAIARESDGKDAKVNDIRRKDNLDASSVIMLNPINGKGSTLRKEVDKFRELVATLMTDKAKLKLIEQALNTESGTKGKSWESSLFENMPTVAAITLLTKLQSDVRYAQGEVLADLVKSVDVGDYRVNSITAQVIPQSQIVMSGDTYKANIVLSSVDTTQRPDVFVNGKLLSPENMGLFTATAGAPGTYPVKGYIEMMGNDGVKIRRDFESEYFVTEPMASVAPTMMNVLYAGIDNPINIAVPGVAQQNVSATINNGTLTRRGNLWIARPTKVGSEAIISVTAQSGGRTIQMAKTTLRVRALPDPLPYIEYKDVQGNTKRFKGGRLGKREILAAGGIKAALDDDLLEVNYTVVKFQLVFYDSMGNSIPEVSDGASFSERQKRQIQNLGKGKRFYVTEVIARGPDGIERKIPAIEVIVN","324044 325591","TIGR ID: PG0290","conserved hypothetical protein","Periplasm, Outer membrane","No significant hit found in gapped BLAST with E value less than e-04.","
noIPR
unintegrated
unintegrated
signalp\"[1-32]?signal-peptide
tmhmm\"[15-35]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Sep 10 13:48:59 2004","","Thu Mar 1 14:16:41 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 14:16:41 MST 2001","-48% similar to PDB:1EUH APO FORM OF A NADP DEPENDENT ALDEHYDE DEHYDROGENASE FROM STREPTOCOCCUS MUTANS (E_value = );-48% similar to PDB:1QI1 TERNARY COMPLEX OF AN NADP DEPENDENT ALDEHYDE DEHYDROGENASE (E_value = );-48% similar to PDB:1QI6 SECOND APO FORM OF AN NADP DEPENDENT ALDEHYDE DEHYDROGENASE WITH GLU250 SITUATED 3.7 A FROM CYS284 (E_value = );-48% similar to PDB:2ESD Crystal Structure of thioacylenzyme intermediate of an Nadp Dependent Aldehyde Dehydrogenase (E_value = );-48% similar to PDB:2EUH HOLO FORM OF A NADP DEPENDENT ALDEHYDE DEHYDROGENASE COMPLEX WITH NADP+ (E_value = );","","","No significant hits to the Pfam 11.0 database","Thu Mar 1 14:16:41 MST 2001","34540131","","","","","","1","","","PG0290" "PG0266","325597","326679","1083","GTGTTTATGAAAGTATTCAAAGCAGTCATAGGAGCGATCCTTGCAGCGACGGTCAGTATCTCGTCCGTTGCGCAGGAAAATACGAACAACCGCTCTCCGCAAGTGGGTCGAGCACCGCGCAATACCGAGGTGGAACAAACGACTACTCTATCCAATCGTGCTCAGGAATTCAACAGACGTCTGACACAGAAGACCGACAACGCCCCCTGGAGGCGAGTCGTGTACCGACGCGTAGACCTGATGGAAGAGTCCAATGCGGTACTCTATTATCCTCCCCGGCCGATTGGTGATCGCAAGAATCTCTTCAGCACGATATTCGGACTCATCAATTCCAACAGCCTCGACGTGTACGAATATCTGGATGGATTCGAAGCCTTCACAGACCAGTACAAGATCAAGTTCCAAGAGTTTCTGGACAGGTTTGGCATCTATTACCAACCGAGTACGAACAAGAATGCGGAGCTCTTCAAGGTGGCAGATAGCGACATCCCCTCGGCAGAAGTCAAAGCCTACTACGTAAAGGAAGAATGGTACTTCACTCCGACCAATAGCGATGTGGACATTAAGATCCAAGCCATTTGTCCGATCATGACCGGCCAAGACGAATTCGGCGAAGTACGCAATCAGCCTTTGTTCTGGATTCCTTACGAAAATATCCGTCCCTACATCGCTCGTGAACGAGTAATGCTTAGCAGTCTGAATAATACTCGCAATTCTACGATAGACGATTTCTTCCGTCTTAATCTCTACAAAGGCGACATCGTCAAGACAGAAAATCTGCACAACCGAGCTTTAGCCGAATACTGTCCTACGCCCGATTCCATGAAGATGGAGAGCAAACGTATCGACAAGGAATTACAAGGTTTTCGCGATGGGCTCTTTGTGACACAGGATACCACATGGATGAAGCAGGCGGAGACAAAGAAAAGCAAGGGAAAGAAACTGGAAAAGGCTCGTGGTAAAAATATCACCAGCCGAACACGCGGACAAGGCGAGGGGGCTGCTGAGACTGAGGCCGTCGAACCCAAAAAGCAGAAAGCTTCTAAAAACAAGGCCGCGACTCGCTCGGTTCGTCGCCGCAAA","10.30","13.18","41624","VFMKVFKAVIGAILAATVSISSVAQENTNNRSPQVGRAPRNTEVEQTTTLSNRAQEFNRRLTQKTDNAPWRRVVYRRVDLMEESNAVLYYPPRPIGDRKNLFSTIFGLINSNSLDVYEYLDGFEAFTDQYKIKFQEFLDRFGIYYQPSTNKNAELFKVADSDIPSAEVKAYYVKEEWYFTPTNSDVDIKIQAICPIMTGQDEFGEVRNQPLFWIPYENIRPYIARERVMLSSLNNTRNSTIDDFFRLNLYKGDIVKTENLHNRALAEYCPTPDSMKMESKRIDKELQGFRDGLFVTQDTTWMKQAETKKSKGKKLEKARGKNITSRTRGQGEGAAETEAVEPKKQKASKNKAATRSVRRRK","325597 326679","TIGR ID: PG0291","hypothetical protein","Periplasm, Outer membrane","No significant hit found in gapped BLAST with E value less than e-04.","
noIPR
unintegrated
unintegrated
signalp\"[1-24]?signal-peptide
tmhmm\"[5-25]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Mar 1 14:15:53 MST 2001","","Thu Mar 1 14:15:53 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 14:15:53 MST 2001","-48% similar to PDB:1N1B Crystal Structure of (+)-Bornyl Diphosphate Synthase from Sage (E_value = );-48% similar to PDB:1N1Z (+)-Bornyl Diphosphate Synthase: Complex with Mg and pyrophosphate (E_value = );-48% similar to PDB:1N20 (+)-Bornyl Diphosphate Synthase: Complex with Mg and 3-aza-2,3-dihydrogeranyl diphosphate (E_value = );-48% similar to PDB:1N21 (+)-Bornyl Diphosphate Synthase: Cocrystal with Mg and 3-aza-2,3-dihydrogeranyl diphosphate (E_value = );-48% similar to PDB:1N22 (+)-Bornyl Diphosphate Synthase: Complex with Mg, pyrophosphate, and (4R)-7-aza-7,8-dihydrolimonene (E_value = );","","","No significant hits to the Pfam 11.0 database","Thu Mar 1 14:15:53 MST 2001","34540132","","","","","","1","","","PG0291" "PG0267","326843","327430","588","TTGTCCGTTTTGTCAAGCTGTCTCTTTTTTGCCGTGAATCCATATCTATCCCTCTTTCTCACCTTTTTCCGTATCGGCGGATTCACCTTCGGTGGAGGTTATGCCATGTTGCCACTGATCAAGGCCGATATAGTGGATAACCACCACTGGCTATCGGAGGAGGATTTTCTGGATCTTTTTGCCGTTGCGCAATCCCTGCCCGGAGTATTTGCCGTCAATATATCCATCTTCGTAGGCTATCGCCTCAGAGGATATGCCGGAGCAGCCGTTTGCGCCTTGGGGACTATTCTTCCCTCGTTCCTGATCATTCTGGCTGTAGCCATGTTCTTTGCGCAGATGAGGGACAACAAAATCATTGCAGCCATTTTCCGAGGATTGCGTCCTGCTGTCATTGCTATGATCGCAGCTCCGGCCATCTCTACATGGAAAGCCATGAAGATGAAAGCCGTTTCGCTCTGGATCCCGATCTTTGCTGCTATTCTTGTTTGGTATGCCGGAGTATCTCCCGTGTGGATTATTCTTGTTGCCGCAGCTTTGGGTATCCTCTATAGTCGTTACCTTCGCTTCCGTATTCGGAATATGCATTCC","10.70","8.60","21602","LSVLSSCLFFAVNPYLSLFLTFFRIGGFTFGGGYAMLPLIKADIVDNHHWLSEEDFLDLFAVAQSLPGVFAVNISIFVGYRLRGYAGAAVCALGTILPSFLIILAVAMFFAQMRDNKIIAAIFRGLRPAVIAMIAAPAISTWKAMKMKAVSLWIPIFAAILVWYAGVSPVWIILVAAALGILYSRYLRFRIRNMHS","326843 327430","NO TIGR ID corresponds to this gene.","conserved hypothetical protein(possible chromate transport protein)","Inner membrane, Cytoplasm","Residues 37 to 173 share 24% identity with dbj|BAB04588.1| (AP001510), a chromate transporter in Bacillus halodurans.Residues 35 to 126 share 33% identity with pir||G71379, a probable chromate transport protein in syphilis spirochete. Residues 34 to 182 share 23% identity with dbj|BAA18657.1| (D90916), a chromate transport protein in Synechocystis sp..","
InterPro
IPR003370
Domain
Chromate transporter region
PF02417\"[13-190]TChromate_transp
InterPro
IPR006741
Family
Accessory gene regulator B
SM00793\"[38-188]Tno description
noIPR
unintegrated
unintegrated
signalp\"[1-35]?signal-peptide
tmhmm\"[19-39]?\"[60-80]?\"[90-110]?\"[125-145]?\"[151-183]?transmembrane_regions


","BeTs to 5 clades of COG2059COG name: Chromate transport protein ChrAFunctional Class: PThe phylogenetic pattern of COG2059 is -m----Vc-B------O----Number of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","Residues 35-119 are 30% similar to a (PROTEIN CHROMATE TRANSPORT TRANSMEMBRANE PLASMID) protein domain (PD004912) which is seen in O05215_BACSU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Mar 1 14:14:59 MST 2001","Thu Mar 1 14:14:59 MST 2001","Mon Apr 2 13:17:03 MDT 2001","","Thu Mar 1 14:14:59 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 15 to 139 share 40% identity with PG0268, a predicted hromate transport protein.","Mon Apr 2 13:17:03 MDT 2001","Thu Mar 1 14:14:59 MST 2001","-49% similar to PDB:1SFN Crystal structure of conserved hypothetical protein from Deinococcus radiodurans R1 (E_value = );","","","Residues 13 to 190 (E-value = 7.1e-36) place PG0267 in the Chromate_transp family which is described as Chromate transporter (PF02417)","Mon Apr 2 13:17:03 MDT 2001","","","","","","","1","","","" "PG0268","327452","328042","591","ATGATTTATTTGCAACTTTTCTGGGTATATATCAAGATCGGGCTGTTCGGTTTCGGTGGAGGCTACGCCATGTTGTCGCTGATTCAGGATGAAGTGGTGAACCGCCACGGCTGGATCACTGCGCAGGAGTTCACGGATATTGTTGCCGTCAGCCAGATGACACCCGGCCCCATAGGCATCAATAGTGCCACATACATAGGCTATACCGTGACCGGCAACGTATGGGGCTCCGTCTTGGCTACGGTAGCCGTCAGCCTGCCATCTTTCGTTTTGGTATTGATTATTTCGGCCTTTTTTGCACGATTCAGACGCAACACTTATGTCGATGCCGCTTTTACAGTGGTACGTCCTGCTTCTGTTGGCCTGATCGCGGCTGCAGCACTATTGCTCACATTCCAGCCGGACTTCATTTCAGCCTTGTTCGCCACCGGCTCGGCAAGCCTCGATCAGGTAGTCGTACGAGAGAACTTCACCGACCTTTGGAGCATCCTCCTGTTCCTGCTATCCTTCCTTGTCACCGTCAAGAAGTGGCTCCATCCCATCCTCACGATACTGCTTGCCGGTCTCGCCGGCCTGCTGATATACGGCTTC","7.70","0.46","21476","MIYLQLFWVYIKIGLFGFGGGYAMLSLIQDEVVNRHGWITAQEFTDIVAVSQMTPGPIGINSATYIGYTVTGNVWGSVLATVAVSLPSFVLVLIISAFFARFRRNTYVDAAFTVVRPASVGLIAAAALLLTFQPDFISALFATGSASLDQVVVRENFTDLWSILLFLLSFLVTVKKWLHPILTILLAGLAGLLIYGF","327452 328042","TIGR ID: PG0292","chromate transport protein ChrA (chromate transporter)","Inner membrane, Cytoplasm","Residues 6 to 128 share 34% identity with dbj|BAA18657.1| (D90916), a chromate transport protein in Synechocystis sp..Residues 1 to 128 share 35% identity with dbj|BAB04589.1| (AP001510), a chromate transporter in Bacillus halodurans.Residues 6 to 126 share 35% identity with >pir||G71379, a probable chromate transport protein in syphilis spirochete.","
InterPro
IPR003370
Domain
Chromate transporter region
PF02417\"[1-197]TChromate_transp
noIPR
unintegrated
unintegrated
signalp\"[1-23]?signal-peptide
tmhmm\"[9-29]?\"[77-99]?\"[120-142]?\"[148-168]?\"[178-196]?transmembrane_regions


","BeTs to 5 clades of COG2059COG name: Chromate transport protein ChrAFunctional Class: PThe phylogenetic pattern of COG2059 is -m----Vc-B------O----Number of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","Residues 4-95 are 40% similar to a (PROTEIN CHROMATE TRANSPORT TRANSMEMBRANE PLASMID) protein domain (PD004912) which is seen in O51407_BORBU.","","","","","","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","","","","","Thu Apr 26 11:27:39 MDT 2001","Thu Mar 1 14:08:42 MST 2001","Mon Apr 2 13:19:26 MDT 2001","","Tue Jun 19 14:57:30 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 3 to 128 share 40% identity with PG0267, a possible chromate transport protein.","Mon Apr 2 13:19:26 MDT 2001","Thu Mar 1 14:08:42 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 1 to 197 (E-value = 2.2e-28) place PG0268 in the Chromate_transp family which is described as Chromate transporter (PF02417)","Tue Jun 19 14:57:30 MDT 2001","","","","","","","1","","","PG0292" "PG0269","328761","328186","576","ATGGCAAATGTTAAGTTATTACTCCCATATATATTGAAATGGGAAGGTGGTTTTGTCCATGATCCTGCCGATGCAGGAGGGGCAACAAACAAAGGTGTAACAATAGCGACTTGGAAAAGAGTCGGCTATGACAAAGACGGCGATGGAGACATCGATGTTGAGGATCTCAAGTTGCTAACCGATGATGACGTCCTGAATCGAGTCTTGAAACCATTTTATTGGGATCGTTGGAAAGCTGACTTAATCGAGTCTCAAAAGGTGGCTAATATCCTTGTCGATTGGGTTTGGGGTTCAGGCAAGTATGGTATTGTTATTCCTCAAAGGATACTAGGTGTGCAGGCTGATGGAATAGTGGGCAATAAGACCTTACAGGCTGTCAATAGTGCAGATCCCGATGAGCTGTTTGAGTCCATCTTCGATGCACGTCGCGAGTTCTTAGAGGACATTACAGCAAGAAGCATAAAAAAGTACGAGGATAGCATCGGACGCAAGGCCACCGAACGCGAATTGCTAAGGCATACCAACAAACGTTTCTTGAGAGGTTGGCTGAACCGTCTTGAAGATATTAGGAAGCTC","5.90","-1.51","21912","MANVKLLLPYILKWEGGFVHDPADAGGATNKGVTIATWKRVGYDKDGDGDIDVEDLKLLTDDDVLNRVLKPFYWDRWKADLIESQKVANILVDWVWGSGKYGIVIPQRILGVQADGIVGNKTLQAVNSADPDELFESIFDARREFLEDITARSIKKYEDSIGRKATERELLRHTNKRFLRGWLNRLEDIRKL","328761 328186","TIGR ID: PG0293. Reported by Chen et al., 2004, to be highly divergent in ATCC 33277.","conserved hypothetical protein","Cytoplasm","Residues 1 to 123 share 30% identity with gbAAF26222.1AF156104_3 (AF156104), an unknown protein in Rhodobacter capsulatus.","
InterPro
IPR002048
Domain
Calcium-binding EF-hand
PS00018\"[44-56]?EF_HAND_1
InterPro
IPR008565
Family
Protein of unknown function DUF847
PF05838\"[6-187]TDUF847


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 10-185 are 29% similar to a (SECRETION ACTIVATOR PROTEIN) protein domain (PD103065) which is seen in Q57000_ZYMMO.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Tue Feb 22 13:49:01 2005","Thu Mar 1 13:57:04 MST 2001","Tue Feb 22 13:49:01 2005","Thu Mar 1 13:57:04 MST 2001","","Thu Mar 1 13:57:04 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 13:57:04 MST 2001","-93% similar to PDB:2NR7 Structural Genomics, the crystal structure of putative secretion activator protein from Porphyromonas gingivalis W83 (E_value = 1.1E_99);","","","Residues 2 to 189 (E-value = 1.7e-27) place PG0269 in the DUF847 family which is described as Protein of unknown function (DUF847) (PF05838)","Thu Mar 1 13:57:04 MST 2001","34540133","","Chen T, Hosogi Y, Nishikawa K, Abbey K, Fleischmann RD, Walling J, Duncan MJ.Comparative whole-genome analysis of virulent and avirulent strains of Porphyromonas gingivalis.J Bacteriol. 2004 Aug;186(16):5473-9.PMID: 15292149","","Tue Feb 22 13:49:01 2005","","1","","","PG0293" "PG0270","330251","329364","888","ATGTCTCCCACCTTGTCCATACTCATACCCGTTTATAAAAGGGATTGTCGCAGACTGCTGGAGGAACTGTATAAGCAGGCCGAAGAACTATCCGTCGGCTACGAAATCATTCTTGGAGACGACTGTTCCGGCGAACCTTACACTTCTCAATATATCGCTTACGAACAGGAGGGACTGTGCCGACTTGTCAGTGCCGAAGAGAACATGGGAGCCGGCCGTCTGCGCAATCGCTTAGCAGAAGAAGCCCAAGGCGAGCAGCTCCTTATCCTCGACTCCGATACCCTGCCGGCATCACCCGACTTCATCGAACGCTATCTGCGACATGCCTCCGGCACAACAGTCGTATGTGGAGGGTTCGTCTACCCGCCCAAATCGACCAATCCCCTCCGGCAACGATATGGCGCCGAAGTGGAAAGTCGATCGGCGGAAGAGCGAGCACGAAAACCCCACTCCGGATTCATCTCAATGGCTTTCATGATCCCAAGAAAACAGATGCTTGCCACCGGCTTCCCTCCCAATATGGGTATGGGGTATGAAGACATCCTGTTCGGCGAGCGTCTGCGACAAGCCGGCATCCCCATCCTACATATCGATAACCCTGTAGAACATTACCACTGCGATACTGCCGAGGGATTTTTGGCCACTACGCGTAGCTATCTGGACAATCTCTATTGTCACCGCGAAGAATTAGCCGAATTGGTAAGCCTGCTCAGAGCATACAATTTGCTGAAACGGCTACACCTTATGCGAATGGTAGCTGCTTTGTGGCCACTGATCCGATCCTCATTGGAAAAGCAGCTCACGGGAGCTAAGCCCTCTCTCCTCCTCTTCAGCCTGTATAAGCTACTATACGTAGCCTCCCTCTCTTTGGTGTGTGCTGAAAAAAGC","6.40","-2.63","33445","MSPTLSILIPVYKRDCRRLLEELYKQAEELSVGYEIILGDDCSGEPYTSQYIAYEQEGLCRLVSAEENMGAGRLRNRLAEEAQGEQLLILDSDTLPASPDFIERYLRHASGTTVVCGGFVYPPKSTNPLRQRYGAEVESRSAEERARKPHSGFISMAFMIPRKQMLATGFPPNMGMGYEDILFGERLRQAGIPILHIDNPVEHYHCDTAEGFLATTRSYLDNLYCHREELAELVSLLRAYNLLKRLHLMRMVAALWPLIRSSLEKQLTGAKPSLLLFSLYKLLYVASLSLVCAEKS","330251 329364 [Delay by 186 355 169 0]","TIGR ID: PG0294","conserved hypothetical protein(possible glycosyltransferase)","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR001173
Domain
Glycosyl transferase, family 2
PF00535\"[6-170]TGlycos_transf_2
noIPR
unintegrated
unintegrated
G3DSA:3.90.550.10\"[3-205]TG3DSA:3.90.550.10
PTHR22916\"[11-204]TPTHR22916
SSF53448\"[3-246]TSSF53448


","BeTs to 8 clades of COG0463COG name: Glycosyltransferases involved in cell wall biogenesisFunctional Class:  MThe phylogenetic pattern of COG0463 is AMTKYQVCEBRHujGPo---XNumber of proteins in this genome belonging to this COG is 8","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Mar 1 11:31:14 MST 2001","","Thu Mar 1 11:31:14 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 11:31:14 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 6 to 170 (E-value = 9.7e-16) place PG0270 in the Glycos_transf_2 family which is described as Glycosyl transferase (PF00535)","Thu Mar 1 11:31:14 MST 2001","34540134","","","","","","1","","","PG0294" "PG0271","331390","330269","1122","ATGGATGATCGTCGCCCCCAACTGACAGAGGAGCAACTGCTTTTCCGCATCGCACTCACGCATGTAAAAGGCGTGGGTAGCGTGCTGGCAAGGCAGCTGCTTTCGGCTATGGGCAGTCCCGAAGCCATCTTTTCCGACAGGAAGGAGCTGGTACAGAGGCTACCGAAAGCACCTCGCCGCCTGCTCGATGCCATCTTCTCTCCTTCGGTCATGGAGGAAGCACGCCGAAAGTTGGATCAAGCCCTCAAAGCCGGTCTGAATATGTATTTCATCACCGATGATAACTATCCTTACCGCTTGAAAGAATGTGTCGACGCCCCCATCCTTCTTTATTCCAAAGGCAATGTCGATCTCTCGCCACGTAGGGTGCTGAGCATTGTAGGTACGCGCAATATCACGGCCTACGGACGTACAGCCACGGAGCGAATCGTATCGGGATTGGCTGAAACCATCCCCGATTTGCTTATCGTCAGCGGACTGGCGTACGGCGTCGATGTCGCAGCTCATAAGGCCGCTTTGGACAATGGCTTGCCCACTGTAGCTGTATTGGCCCATGGATTGGACAGGATTTATCCGAGCGGTCATCGTTCCATTGCTATGGAGATGCTCCGAAACGGAGGCTTGCTCACGGATTACCCTATGGGGACTGAACCGGAGCGATTCAATTTCGTCGGTCGCAATCGCATCGTAGCAGGCTTGTCGGACGCCACACTTGTGATCGAATCGGCCGAAAAAGGAGGCTCCCTCATCACTGCCGGACTGGCATTCGGCTACAATCGCGAAGTACTGGCTCTACCCGGACGAGCCACGGATAGCCGTTCGGCCGGCTGCAATGCCTTGATAAGGGATCAAAAAGCCGCGCTTGTCAGCTCGGCTCAAGATGTGCTGACGCTGCTCGATTGGAGTTCTACCATAGACGCCAAACCTCAGACATTGAATTTCCGTCCCGATAGTTGGCCGGATACCCCCGTAGCCGAATGTCTTCTCAGAGCAGGCACAGCCTCGGTGGACGAGCTGACACGCGCTACCGGACTACCTATAAACGATGTTTCTGCTCAGCTTTTCGACCTCGAATTGGACGGACTGGTACAGTCTCAGCCCGGTGGCATATACTCCGTTATA","5.80","-3.16","40487","MDDRRPQLTEEQLLFRIALTHVKGVGSVLARQLLSAMGSPEAIFSDRKELVQRLPKAPRRLLDAIFSPSVMEEARRKLDQALKAGLNMYFITDDNYPYRLKECVDAPILLYSKGNVDLSPRRVLSIVGTRNITAYGRTATERIVSGLAETIPDLLIVSGLAYGVDVAAHKAALDNGLPTVAVLAHGLDRIYPSGHRSIAMEMLRNGGLLTDYPMGTEPERFNFVGRNRIVAGLSDATLVIESAEKGGSLITAGLAFGYNREVLALPGRATDSRSAGCNALIRDQKAALVSSAQDVLTLLDWSSTIDAKPQTLNFRPDSWPDTPVAECLLRAGTASVDELTRATGLPINDVSAQLFDLELDGLVQSQPGGIYSVI","331390 330269","TIGR ID: PG0295","DNA processing protein subunit A (Smf family)","Cytoplasm","Residues 55 to 374 share 33% identity with gb|AAD35341.1|AE001708_9 (AE001708), the DNA processing chain A in Thermotoga maritima.Residues 4 to 374 share 29% identity with gb|AAD21554.1| (AF088896), the DNA processing chain A in Zymomonas mobilis.Residues 91 to 296 share 41% identity with dbj|BAB06187.1| (AP001515), a DNA processing protein (Smf family) in Bacillus halodurans.This region shares a similar degree of identity with several additional bacterial DNA processing proteins in the Smf family.","
InterPro
IPR003488
Family
SMF protein
PF02481\"[80-289]TSMF
TIGR00732\"[78-299]TdprA
InterPro
IPR010994
Domain
RuvA domain 2-like
SSF47781\"[17-91]TRuvA_2_like
noIPR
unintegrated
unintegrated
SSF102405\"[121-299]TSSF102405
SSF46785\"[318-366]TSSF46785


","BeTs to 9 clades of COG0758COG name: Protein involved in DNA uptakeFunctional Class: NThe phylogenetic pattern of COG0758 is -----qvcebrhuj--ol---Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 186-266 are 50% similar to a (PROTEIN SMF DNA PROCESSING) protein domain (PD007421) which is seen in SMF_SYNY3.Residues 125-186 are 54% similar to a (PROTEIN BTN1-PEP8 INTERGENIC REGION) protein domain (PD005712) which is seen in YS96_MYCTU.Residues 96-173 are 40% similar to a (PROTEIN SMF DNA PROCESSING) protein domain (PD009506) which is seen in SMF_BACSU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed May 23 16:50:13 MDT 2001","Thu Mar 1 11:29:57 MST 2001","Thu Apr 26 11:34:42 MDT 2001","","Thu Mar 1 11:29:57 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 11:29:57 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 80 to 289 (E-value = 3.5e-72) place PG0271 in the SMF family which is described as SMF family (PF02481)","Thu Apr 26 11:34:42 MDT 2001","34540135","","","","","","1","","","PG0295" "PG0272","335087","331386","3702","ATGATTTTATTCTTTCACCATTCGTCCGGCTCTGTCTATGCCGTGGAGAGTGAAGTTCAGTTCAGCGAAGAAGAAATACATCGGCTGGTATGGCTGTTTGGGGGAGCCGAACCCTGTCAGTCCGATGTTGTAAACGGCTATCACGTAGGCCCTCGTCGGGAGATGGTAACACCTTGGAGTACCAACGCCGTCGAGATAACGCAGAATATGAACGTTGCAGGCATACGCCGTATCGAAGAGTTCTTTCCGGTGAAAGGTGCCGATGCAGAGTTCGATCCCATGCTTCAAGCTCTCTATGAGCAGCTGGACCAAAAGATTTTCGATATAGATCGTAAGCCTGAGCCGATCATTTCCGTCAAGGACATTCGCGCTTATAATGAAGCTGAGGGATTGGCTCTGAGCGAAGATGAAATCAGTTATCTGAAAGGCGTGTCCGAACGCATTGGCAGGCCCCTCACGGACAGCGAGTTGTTCGGATTCTCACAGGTTAATTCCGAACACTGCCGGCACAAGATATTCGGCGGCACGTTTATTATTGATGGAGAGGAGAAGGAAAGCTCTCTCTTCAACCTGATCAAACGTACCTCTGCTGTCAATCCCAATTTGCTTGTGTCCGCATACAAGGACAATGTGGCTTTCATCCAAGGCCCGAAGGTAGAGCAATTTGCCCCCCGCAGTGCAGACAAACCGGACTACTTCGAAACCAAAACGATAGATACCGTACTGAGTCTCAAAGCCGAGACACATAATTTCCCTACTACGGTGGAGCCTTTCAATGGCGCAGCCACAGGGACAGGGGGAGAGATTCGTGACCGAATGGCCGGTGGAAAGAGCAGCATTCCGTTGGCAGGTACCGCTGTCTATATGACTTCTTACGCCCGTACTGATGGAACACGACCATTCGAAAAGAAACTATCCGAACGCCGTTGGCTCTATCAATCGCCCCGTCAGATCTTGACCAAGGCCTCTAACGGTGCCAGCGATTTCGGCAATAAATTCGGCCAGCCACTCATTACAGGATCCGTTCTGACCTTTGAACACCAAGAAACTCCCGATACTACCTGCTATGGCTATGACAAAGTCATCATGCTTGCCGGAGGTGTCGGCTATGCCAAACAGTCGGACGCTCTTAAAGGAGAGCCGTCTCCGGGAGAAAAAGTAGTAATCCTGGGTGGAGACAATTACCGCATAGGTATGGGTGGCGGAGCTGTCAGCTCTGTGAATACGGGACAATTGTCCGGCAGTATAGAACTGAATGCCATCCAGCGCTCTAATCCCGAGATGCAGAAGCGTGTACAGAATGTGATCAGAGCTATAGCGGAAAATGACAATAACCCGATCGTCTCCATCCACGATCACGGAGCCGGAGGACATCTCAACTGCCTGTCCGAATTGGTGGAAGCGACCGGCGGACGAATCGACATGGATCGGCTTCCCGTCGGAGACCCTACCCTCTCTGCCAAAGAGATAATCGGCAACGAGAGTCAGGAACGTATGGGGATGCTGATGCAGGAGAAAGATTTGGAATATGTACGCAAAATAGCCGAACGCGAACGCGCTCCCATGTATGTGGTCGGAGAGACCACTGACGATATGCGCTTCGTCTTCCGCAAGGACAATGGCGAGTGTCCTATCGACATGAAGCTGGACGACATGTTTGGCAAGCCTCCCCGTACCATCATGGAGGACAGAACCATAGAACATCGCTATCAGGCACCGCAATACGACCCTGCCCGTCTGGATGAATATCTGGAGCAGGTATTGCGTATGGAGTCAGTAGCTTGTAAGGATTGGCTTACCAATAAGGTGGACAGATCTGTGACAGGACGAGTGGCTCGCCAGCAGTGTCAGGGCGAATTGCAACTTCCGCTCAGCGACCTCGGTGCTATGGCTCTGGACTATCGCGGCCATAGCGGAGTGGCTACTTCTATCGGCCATGCCCCTCAGGCCGCTTTGGCCGATCCGGCAGCCGGATCGGTGCTGGCCATAGCCGAAGCTCTGACCAATATCGTCTTTGCTCCGCTTCGTAATGGTATCGAGGGTGTGAGCCTGTCGGCCAACTGGATGTGGCCCTGCCGTAACGAAGGCGAAGATGCCCGTCTGTACCGTGCCGTGGAAGCCTGTTCGGACTTTGCCGTCGATCTGGGCATCAACATCCCTACCGGCAAGGACTCTCTGTCCATGACACAGAAATATGAGGACAAAAAAGTGCTGAGTCCCGGTACGGTGATTATCAGTGCCGCAGCCGAAGTGACAGACATTCGTCGCATCGTCAGCCCCGTCCTCAGCCATATAGCCGCTACCGCTCTCTACTATATCGATTTCAGCTTCTGCCCGTTCTCATTGGGAGGATCGGCCTTTGCCCAGAGCTTGGGTACTATCGGTGATGAAGTCCCCACTGTACGTGATCCGGAATACTTCCGCGATGCGTTCAATACCGTACAGGAACTCATTGACAAGGGTCTGGTTCTGGCCGGACACGACATATCCGCAGGCGGTCTGATTACGGCTCTTCTGGAAATGTGCTTTGCCAATGTAGTAGGCGGTCTGGAGGTGGAATTGGATAACCTCGTGGAAGACGACCTGATCAAAGTCCTCTTTGCCGAAAACCCGGGTATCCTCATTCAGGTAAAGGACCGCAAAGCCGTTGATAAGATCCTGACCGATGCCGGCATCGGTTTCCTCCCGATAGCCAAGCCGACCCAAGAGCGACACCTCTTGATACATAAAGACGGAGCCGAATACCTGTTCGGTATCGACCACATGCGCGACGTTTGGTATGAGTCGTCCTACCTGCTGGACTGCTTCCAGAGTGGCAATACCTTGGCCGGCAACCGCTTCGAGAACTATAAGGAACAACCGGTCGTATATCACTTCCCCAAGCAATTTACGGGTGATCTGAAGGCGATGGGATTGGATCCCGATCGAAAGACGGCATCCGGCATCCGCGCCGCCATCATTCGCGACAAGGGAACGAATGGAGAGCGGGAAATGGCCTATGCTCTCTATCTGGCCGGCTTCGACGTGAAGGACGTACACCTGACAGACCTGACCAGTGGAAGAGAGACACTGGAAGACATCCGGATGATTGTCTTCTGTGGTGGATTTTCCAATTCGGACGTACTCGGATCTGCCAAAGGATGGGCCGGCGGTATTCTCTTCAATGAGCAAGCGAAAGCCACGCTGGATCGTTTCTTCGCACGACCCGATACGCTCAGCCTCGGTATCTGCAACGGCTGCCAGCTGATGGCCGAGTTGGAACTTCTATACCCCGAACACGAACTCAAGCACAAGCTTGTCCACAACGAATCGCAGAAATTCGAAAGCACATTCGTCACTCTCGAAATCCCGCATAACGACTCCATCATGCTCGGCAATCTGGCCGGAAGCAAGATCGGTGTATGGTGTGCTCATGGCGAGGGTCGGTTCAGTCTCCCGTACGAGGAGAAAGCCTACCATGTGGTGGCCAAGTACGAATACGACGGCTATCCTGCCAATCCCAACGGATCGCCACACCGCATAGCCGGATTGTGCAGCGCGGATGGCCGCCATCTGACGATGATGCCACATCCGGAGCGGAGCATATTCCCCTGGCAGTGCGGTTATTATCCCGAATCACAACGACACGAACATCAGGTGACACCTTGGATGCAGGCTTTCCGCAACGCTTACGAGTGGATAGCCAAGCAGGTGAAAAATGGA","5.10","-39.98","136540","MILFFHHSSGSVYAVESEVQFSEEEIHRLVWLFGGAEPCQSDVVNGYHVGPRREMVTPWSTNAVEITQNMNVAGIRRIEEFFPVKGADAEFDPMLQALYEQLDQKIFDIDRKPEPIISVKDIRAYNEAEGLALSEDEISYLKGVSERIGRPLTDSELFGFSQVNSEHCRHKIFGGTFIIDGEEKESSLFNLIKRTSAVNPNLLVSAYKDNVAFIQGPKVEQFAPRSADKPDYFETKTIDTVLSLKAETHNFPTTVEPFNGAATGTGGEIRDRMAGGKSSIPLAGTAVYMTSYARTDGTRPFEKKLSERRWLYQSPRQILTKASNGASDFGNKFGQPLITGSVLTFEHQETPDTTCYGYDKVIMLAGGVGYAKQSDALKGEPSPGEKVVILGGDNYRIGMGGGAVSSVNTGQLSGSIELNAIQRSNPEMQKRVQNVIRAIAENDNNPIVSIHDHGAGGHLNCLSELVEATGGRIDMDRLPVGDPTLSAKEIIGNESQERMGMLMQEKDLEYVRKIAERERAPMYVVGETTDDMRFVFRKDNGECPIDMKLDDMFGKPPRTIMEDRTIEHRYQAPQYDPARLDEYLEQVLRMESVACKDWLTNKVDRSVTGRVARQQCQGELQLPLSDLGAMALDYRGHSGVATSIGHAPQAALADPAAGSVLAIAEALTNIVFAPLRNGIEGVSLSANWMWPCRNEGEDARLYRAVEACSDFAVDLGINIPTGKDSLSMTQKYEDKKVLSPGTVIISAAAEVTDIRRIVSPVLSHIAATALYYIDFSFCPFSLGGSAFAQSLGTIGDEVPTVRDPEYFRDAFNTVQELIDKGLVLAGHDISAGGLITALLEMCFANVVGGLEVELDNLVEDDLIKVLFAENPGILIQVKDRKAVDKILTDAGIGFLPIAKPTQERHLLIHKDGAEYLFGIDHMRDVWYESSYLLDCFQSGNTLAGNRFENYKEQPVVYHFPKQFTGDLKAMGLDPDRKTASGIRAAIIRDKGTNGEREMAYALYLAGFDVKDVHLTDLTSGRETLEDIRMIVFCGGFSNSDVLGSAKGWAGGILFNEQAKATLDRFFARPDTLSLGICNGCQLMAELELLYPEHELKHKLVHNESQKFESTFVTLEIPHNDSIMLGNLAGSKIGVWCAHGEGRFSLPYEEKAYHVVAKYEYDGYPANPNGSPHRIAGLCSADGRHLTMMPHPERSIFPWQCGYYPESQRHEHQVTPWMQAFRNAYEWIAKQVKNG","335087 331386","TIGR ID: PG0296","phosphoribosylformylglycinamidine (FGAM) synthase","Cytoplasm","Residues 49 to 1227 share 36% identity with gbAAG52403.1AC020579_5 (AC020579), a putative phosphoribosylformylglycinamidine synthase; 25509-29950 in Arabidopsis thaliana.Residues 23 to 1227 share 36% identity with gbAAG07150.1AE004795_2 (AE004795), a phosphoribosylformylglycinamidine synthase in Pseudomonas aeruginosa.Residues 49 to 1223 share 35% identity with gbAAC75610.1 (AE000342), a phosphoribosylformyl-glycineamide synthetase = FGAMsynthetase in Escherichia coli K12.This region also shares strong identity with a number of additional bacterial phosphoribosylformylglycinamidine synthases. This sequence is similar to BT1733.","
InterPro
IPR000728
Domain
AIR synthase related protein
PF00586\"[184-372]TAIRS
InterPro
IPR010073
Family
Phosphoribosylformylglycinamidine synthase, eukaryotes and proteobacteria
TIGR01735\"[4-1227]TFGAM_synt
InterPro
IPR010918
Domain
AIR synthase related protein, C-terminal
PF02769\"[382-539]T\"[766-911]TAIRS_C
noIPR
unintegrated
unintegrated
PTHR10099\"[49-1228]TPTHR10099
SSF109736\"[104-171]TSSF109736
SSF52317\"[975-1228]TSSF52317
SSF55326\"[172-380]T\"[564-759]TSSF55326
SSF56042\"[378-603]T\"[768-934]TSSF56042
SSF82697\"[12-111]TSSF82697


","BeTs to 11 clades of COG0046COG name: Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domainFunctional Class: FThe phylogenetic pattern of COG0046 is amtkyqvcebrh---------Number of proteins in this genome belonging to this COG is 1","***** BP01440 (SYNTHASE PHOSPHORIBOSYLFORM) with a combined E-value of 2.4e-08. BP01440B 827-843","Residues 173-354 are 38% similar to a (PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE FGAM) protein domain (PD009676) which is seen in PUR4_DROME.Residues 239-340 are 31% similar to a (PROTEIN LIGASE SYNTHETASE) protein domain (PD000644) which is seen in Q58660_METJA.Residues 1099-1193 are 51% similar to a (SYNTHASE) protein domain (PD004290) which is seen in PUR4_DROME.Residues 544-762 are 37% similar to a (TEGUMENT PROTEIN MEMBRANE ANTIGEN P140 PROBABLE) protein domain (PD002906) which is seen in PUR4_DROME.Residues 965-1226 are 27% similar to a (TEGUMENT PROTEIN P140 MEMBRANE) protein domain (PD005439) which is seen in P88964_KSHV.Residues 782-912 are 38% similar to a (PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE II LIGASE) protein domain (PD001440) which is seen in Q19311_CAEEL.Residues 427-533 are 41% similar to a (PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE FGAM) protein domain (PD037529) which is seen in PUR4_DROME.Residues 983-1086 are 58% similar to a (PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE FGAM) protein domain (PD009675) which is seen in Q19311_CAEEL.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Mar 1 11:21:55 MST 2001","Tue Jul 13 14:41:15 2004","Thu Apr 26 11:45:04 MDT 2001","Thu Mar 1 11:21:55 MST 2001","Thu Mar 1 11:21:55 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Jul 30 14:41:03 2008","-44% similar to PDB:1VK3 Crystal structure of Phosphoribosylformylglycinamidine synthase II (TM1246) from Thermotoga maritima at 2.15 A resolution (E_value = 1.1E_21);-44% similar to PDB:2HS0 T. maritima PurL complexed with ATP (E_value = 1.1E_21);-44% similar to PDB:2HS3 T. maritima PurL complexed with FGAR (E_value = 1.1E_21);-44% similar to PDB:2HS4 T. maritima PurL complexed with FGAR and AMPPCP (E_value = 1.1E_21);-43% similar to PDB:2HRU T. maritima PurL complexed with ADP (E_value = 1.6E_20);","","","Residues 184 to 372 (E-value = 5.2e-07) place PG0272 in the AIRS family which is described as AIR synthase related protein, N-terminal domain (PF00586)Residues 382 to 539 (E-value = 7.3e-22) place PG0272 in the AIRS_C family which is described as AIR synthase related protein, C-terminal domain (PF02769)Residues 766 to 911 (E-value = 3.4e-08) place PG0272 in the AIRS_C family which is described as AIR synthase related protein, C-terminal domain (PF02769)","Mon Dec 8 15:55:43 2003","34540136","","","","","","1","","","PG0296" "PG0272.1","335192","335584","393","TTGTTTATGAAAAAGGGAGAGGCTCTTTCCAGTGCCTCTCCTTCGGTTTTATCGGAGTTGCTTTGGATAAATAAGCTTACCTGGAGCTTTACAAATAAATATAGGTCTTTTCGCCCAAGTCATCCGTCTGTTACCCTCCATGCTTCGATTAAGGAACTTTCAGCAGAGTTTCAGGCAGACAGCATAGCAAAGGTTTCACAAGCTCTTCAGCCAATTTGCAGGCTGCATGTCCTTTATGGAGATCAACAATGGTCTGCGTTCGGCCACAGGCAATCTCCCGCGATAGATCCCTCGCTGCAAGCGCGTAATGACAATCTTGCGAGAGAAATTCCTTGCCGCAAGCCTGCGGCAAAGAATTTTGTATACAAAATCACTTGCTGCAAGCCTGCAGCA","","","14641","LFMKKGEALSSASPSVLSELLWINKLTWSFTNKYRSFRPSHPSVTLHASIKELSAEFQADSIAKVSQALQPICRLHVLYGDQQWSAFGHRQSPAIDPSLQARNDNLAREIPCRKPAAKNFVYKITCCKPAA","","NO TIGR ID corresponds to this gene.","hypothetical protein","Periplasm","No hit found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG0272.2","336069","335752","318","ATGGTGATTTTATGCATAAAGATTTCTTACTGCAGGCTTGCAATAAGAAATTTTGTTCGCGAGATTCTATGCTGCAGGCTTGCAGTAAGGAATTTTGCATACAAAATTCTTAGCCGCAGGCTTGCGGCGAGTAAGTTTGCCAACAAAATCGCTATTTTCCGCTTGCAACGAGTGATTTTTTATGCAAAATCGTCATTTCACGCCTGCAAAAGGCAATTTTGTTCGCAAGATTGTACATTGCTGATAGGATTCTATGAATTTTGTTCGCGAGATTCTATGCTGCAGGCTTGCAGCAAGGAATTTTGCATACAAAATTCT","","","12399","MVILCIKISYCRLAIRNFVREILCCRLAVRNFAYKILSRRLAASKFANKIAIFRLQRVIFYAKSSFHACKRQFCSQDCTLLIGFYEFCSRDSMLQACSKEFCIQNS","","NO TIGR ID corresponds to this gene.","conserved hypothetical protein","Periplasm, Cytoplasm","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-13]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Thu Mar 1 11:09:43 MST 2001","","Thu Mar 1 11:09:43 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 9 to 99 share 41% identity with PG0404.2.","Thu Mar 1 11:09:43 MST 2001","Thu Mar 1 11:09:43 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Mar 1 11:09:43 MST 2001","","","","","","","1","","","" "PG0273","336545","336210","336","ATGTCTGTTCGACGTTGGAATAGAAAGGTTAAGATCTCGGACAGCAAGATCATGACCATCCTGATCCTGTTTCATCTCTCAAAACGCCAAAATTGGAAAGCTTTTTATCTTCAATATATCACCTGCTCAGGTCGGCCCAAGTTTCCACATCTTGTCTCTTATAATCGCTTTGTGGAGCTACAAAACAGTATAGGCTTCAAGCAAATAGCATCTCTCAATAGGTGTTGTTTAGGTCAATGTACAGGTATCTCATTGACCGATAAGGCTCCTCTTAGATATTTATTTGAAAAGATGAATTTCAATGATGTAAAAGAACTCGATTACCCTCTTTTTGAT","10.50","10.27","13271","MSVRRWNRKVKISDSKIMTILILFHLSKRQNWKAFYLQYITCSGRPKFPHLVSYNRFVELQNSIGFKQIASLNRCCLGQCTGISLTDKAPLRYLFEKMNFNDVKELDYPLFD","336545 336210","TIGR ID: PG0299","ISPg3-related (IS195-related) element","Cytoplasm","Residues 4-92 are 70% similar to residues 34-122 of the previously sequenced gb|AAC26596.1, an ISPg3 transposase. Residues 4-97 are 41% similar to the transposase from Piscirickettsia salmonis (AF184152).","
noIPR
unintegrated
unintegrated
signalp\"[1-29]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 45-92 are 72% similar to a (PROTEASE PUTATIVE TRANSPOSASE PLASMID) protein domain (PD190029) which is seen in O87010_PORGI.Residues 4-43 are 70% similar to a (PUTATIVE PROTEASE PROTEASE) protein domain (PD203593) which is seen in O87010_PORGI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Feb 8 16:34:32 MST 2001","Thu Feb 8 16:39:10 MST 2001","Thu Feb 8 16:34:32 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","PG0273 is similar to fragments of PG0236, PG0178, PG1663, PG0919, PG0718, PG1115, all ISPG3-related transposases or fragments. Residues 4-92 are 70% similar to residues 34-122 of PG0236.","Thu Feb 8 16:40:49 MST 2001","","-51% similar to PDB:2HAK Catalytic and ubiqutin-associated domains of MARK1/PAR-1 (E_value = );-51% similar to PDB:1Y8G Catalytic and ubiqutin-associated domains of MARK2/PAR-1: Inactive double mutant with selenomethionine (E_value = );-51% similar to PDB:1ZMU Catalytic and ubiqutin-associated domains of MARK2/PAR-1: Wild type (E_value = );-51% similar to PDB:1ZMV Catalytic and ubiqutin-associated domains of MARK2/PAR-1: K82R mutant (E_value = );-51% similar to PDB:1ZMW Catalytic and ubiqutin-associated domains of MARK2/PAR-1: T208A/S212A inactive double mutant (E_value = );","","","No significant hits to the Pfam 11.0 database","","","","Lewis JP, Macrina FL, IS195, an insertion sequence-like element associated with protease genes in Porphyromonas gingivalis. Infect Immun 1998 Jul;66(7):3035-42, PubMed: 9632563.","Kehrenberg C, Werckenthin C, Schwarz S, Tn5706, a transposon-like element from Pasteurella multocida mediating tetracycline resistance. Antimicrob Agents Chemother 1998 Aug;42(8):2116-8, PubMed: 9687418.","Thu Feb 8 16:39:10 MST 2001","Thu Feb 8 16:39:10 MST 2001","1","","","PG0299" "PG0274","336710","337999","1290","ATGAAACGCCTCCTGCTCTGCCTCATTGTTATTGCTCAGACCATCCTATCCTTAACTGCCCAGACCACAGAAGAATTGAGCCGAATGCAGACTCTCATCGACCATATGGCCTATACGGAGGCTTTGGCTTGGGCGGACAGTTGCAGCCTGCAAGACGAGCAAGCTCTACACCTCCGAGCCAAAGCTCTCAGCGAACTGGGACGACATCCCGAAGCCTTTGCCGTCTACCAAAGGATCGTACGGATGGATCCTCACGATGCGGTAGCTTATCGTTTGGGGGCAGCGTTGCAAGTGGATATGCAGGATTATGCCACAGCGGCCGAAATGCTGCATCAAGGCTATGAGCGCACGTCCGATATTCCGACAGGGTACGACTTGGCCAAACTGCTCGTTCACATCGGACAGGATTCCACGGCATTGGTCATCACAGACAGGATCTTACGGCAGGATTCGCTCCCTCCCGTCATTCGCCTTAGGGCAAAAGCACTCAACAAACGACAACAACCTTCTCAAGCGATAGCACTGTTGGAAGAGCAGATGCTTCGGGATTCTACCGATTTCCTTACCCTGATTGATCTGGCTACCCTGTACGGACAGGTAGAAGAAACGCGCCGGCAGGAACAGGTGACAGCACGCTATCTGCAAACTGACTCGCTGAACGTGGCCGTACTTCTGGCCCATGCCGAATCCATGATGATGCTACAGGAAGCGGATAGTGCCCTGCATGACTATGAGCGGATTATCGGTCGAGGCCATTTCCCCACCTCATTCAAGGATCTCTTCTATTGCGGTTTGGCGTACTACAAAACCGGTAGGTGGGCCGTAGCCGAAGAATGCTTCAGACGAGCCGACGAATCCGCCTTCCAACAAAACTACCTGACCAAATACTACTTGGGCATGTGTGCCTATCGCCAAAAGCTGTGGGAAGAAGCGGAAAAGCGGTTGCAGAAGTTGCTCGATCTGATCGAACCGAAAACGGACAGACTCACCGATGTGCATACGATGCTCGGTCGATGCGCCAATGAACAAGGGCGAACGGAAACAGCCATATCCCATCTGCGCTATGCCATAGAATACGATAGCGGCAACAGCGAGGCCTGCCTGCTCCTTGCTCAATGCTTTGAAAAGACAGGCAACCGCACCGGTGCGATCCACATGTACCGGCGTGTCCTCGACAAGGAAAGAGCAAGTACGGCGAAAAACGACATAGAGGGCTTCCGCCGATTGGCTGAAGCACGGAGCAGGCTATCCCTCCTGAAAGCCGACGATTCGGAGGACGAGGAAACGCCG","5.80","-8.45","49073","MKRLLLCLIVIAQTILSLTAQTTEELSRMQTLIDHMAYTEALAWADSCSLQDEQALHLRAKALSELGRHPEAFAVYQRIVRMDPHDAVAYRLGAALQVDMQDYATAAEMLHQGYERTSDIPTGYDLAKLLVHIGQDSTALVITDRILRQDSLPPVIRLRAKALNKRQQPSQAIALLEEQMLRDSTDFLTLIDLATLYGQVEETRRQEQVTARYLQTDSLNVAVLLAHAESMMMLQEADSALHDYERIIGRGHFPTSFKDLFYCGLAYYKTGRWAVAEECFRRADESAFQQNYLTKYYLGMCAYRQKLWEEAEKRLQKLLDLIEPKTDRLTDVHTMLGRCANEQGRTETAISHLRYAIEYDSGNSEACLLLAQCFEKTGNRTGAIHMYRRVLDKERASTAKNDIEGFRRLAEARSRLSLLKADDSEDEETP","336710 337999","TIGR ID: PG0300","conserved hypothetical protein","Cytoplasm, Periplasm, Inner membrane","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR001440
Repeat
Tetratricopeptide TPR_1
PF00515\"[330-363]T\"[364-397]TTPR_1
InterPro
IPR011990
Domain
Tetratricopeptide-like helical
G3DSA:1.25.40.10\"[51-151]T\"[159-395]TTPR-like_helical
InterPro
IPR013026
Domain
Tetratricopeptide region
SM00028\"[53-86]T\"[153-186]T\"[292-325]T\"[330-363]T\"[364-397]TTPR
PS50005\"[53-86]T\"[257-290]T\"[292-325]T\"[330-363]T\"[364-397]TTPR
PS50293\"[53-120]T\"[153-397]TTPR_REGION
InterPro
IPR013105
Repeat
Tetratricopeptide TPR_2
PF07719\"[53-86]TTPR_2
noIPR
unintegrated
unintegrated
PTHR23083\"[10-415]TPTHR23083
SSF48452\"[51-392]TSSF48452


","BeTs to 10 clades of COG0457COG name: TPR-repeat-containing proteinsFunctional Class:  RThe phylogenetic pattern of COG0457 is AMTKYQVCEB-HUJ--OLINXNumber of proteins in this genome belonging to this COG is 21","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Mar 1 11:07:33 MST 2001","","Thu Mar 1 11:07:33 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 11:07:33 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Mar 1 11:07:33 MST 2001","34540138","","","","","","1","","","PG0300" "PG0275","338359","338778","420","ATGGGCGAGATTATCAGTCATAGCGGAGTTGTCAGCCGAGTGGAAGCCGACAAGATAACGGTATGTGTGCAGCAGAAAAGTGCATGCGCCGGTTGTCATGCCGCCGGCTATTGCTCCTCTACAGACTGCAAAGATCGATATATCACCGTAATGGGACCCGCACCTGACATCCGCGAAGGTGATCGGGTTTTGCTGGAAGGTCATAGTGCCATGGGACGTCTTGCTGTCATCCTCTCTTTCATTGTCCCTTTGATTTTGTTGCTGCTTATGCTTGTCCTCACCATCAGTATTCTGAGGTTGGACGAGGGCATGAGTACGCTTATTTCTTTGGGAGCTTTGGGAGTATACTACCTGATTCTCCGGTTATTCAACGGCAAACTGAGCCGACGTTTGGTATTTACTATTCGAAAAAATAATCAG","8.60","4.47","15249","MGEIISHSGVVSRVEADKITVCVQQKSACAGCHAAGYCSSTDCKDRYITVMGPAPDIREGDRVLLEGHSAMGRLAVILSFIVPLILLLLMLVLTISILRLDEGMSTLISLGALGVYYLILRLFNGKLSRRLVFTIRKNNQ","338359 338778","This gene belongs to a conserved gene cluster on the positive strand, PG0275-PG0281, which is repeated on the negative strand at PG1906-PG1911. The similarity of PG0278 to PG1910, PG0280 to PG1908 and PG0281 to PG1907 suggests preservation of gene order. Rho independent terminators have been located on the appropriate strand immediately downstream of PG0281 and PG1906. The location of these terminators, similarity of gene function, and short (<42 bp) intergenic spaces suggest that these clusters may be operons.TIGR ID: PG0302","hypothetical protein","Inner membrane, Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR007359
Family
Positive regulator of sigma(E), RseC/MucC
PF04246\"[10-132]TRseC_MucC


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Wed Mar 28 13:03:19 MST 2001","Thu Mar 1 11:00:52 MST 2001","","Thu Mar 1 11:00:52 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 11:00:52 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Mar 28 13:03:19 MST 2001","34540139","","","","","","1","","","PG0302" "PG0276","338791","339660","870","ATGATACTTACTACTGTGATTGTTTTGGCCGCAATCGGTGCCATCGGTGCACTGGTTTTGTTTTTGGCCGCAAAGAAGTTCGAGGTCAAGGAAGACCCACGCATCGGACTGGTTGCAGAGGTACTCCCTCAAGCCAACTGTGGGGGATGTGGCTTCCCCGGATGCTCCGGTTTTGCCAATGCCTGCGTCAAAGCCGAAAGCCTCGAAGGACTGCTCTGTCCCGTAGGGGGAGCAGCGGTGATGGGGCAGATAGCCGACATCCTCGGCATGGCCGCGGCCGCTCAGGATCCGAAGATTGCCGTGGTTCGTTGCAATGGCAATTGCGATGCCCGTCCGCGTACGAACCTGTACGACGGAGCCTCCAGCTGTGCAGTAGCCGCTTCGCTATATAGCGGAGACACGGGCTGTAGCTTCGGCTGTCTGGGATTGGGCGATTGTGTGGATGCCTGCGGATTCGATGCTATCCGCATCAACCCGACAACCTTGCTGCCGGAAGTGGTGGAGGATGCTTGTACGGCATGTGGTGCTTGTGTCAAGGCCTGTCCCAAATCGATCATCGAACTCCGGAAGAAAGGGCCTAAGAGCCGCCGTATCTTTGTTAGCTGCGTGAACAAGGACAAAGGCGGTGTCGCCAAGAAAGCTTGTAGCAATGCTTGTATCGGCTGCTCGCTCTGCTTGAAGCAATGCCAATTCGAGGCTATCACCATCGAGAACAACCTCTCGTACATAGACCACACCAAGTGTCGCATGTGCCGCAAGTGTGTGGAAGTATGTCCCACGAATGCCATCCACGAGCTGAACTTCCCACCGAAGAAGAAAGTGGAGCCGGCTGTCGCCACAGAAGCTGCCGCACCGGCACAAGAGACTGTC","7.40","2.25","29985","MILTTVIVLAAIGAIGALVLFLAAKKFEVKEDPRIGLVAEVLPQANCGGCGFPGCSGFANACVKAESLEGLLCPVGGAAVMGQIADILGMAAAAQDPKIAVVRCNGNCDARPRTNLYDGASSCAVAASLYSGDTGCSFGCLGLGDCVDACGFDAIRINPTTLLPEVVEDACTACGACVKACPKSIIELRKKGPKSRRIFVSCVNKDKGGVAKKACSNACIGCSLCLKQCQFEAITIENNLSYIDHTKCRMCRKCVEVCPTNAIHELNFPPKKKVEPAVATEAAAPAQETV","338791 339660","This gene belongs to a conserved gene cluster on the positive strand, PG0275-PG0281, which is repeated on the negative strand at PG1906-PG1911. The similarity of PG0278 to PG1910, PG0280 to PG1908 and PG0281 to PG1907 suggests preservation of gene order. Rho independent terminators have been located on the appropriate strand immediately downstream of PG0281 and PG1906. The location of these terminators, similarity of gene function, and short (<42 bp) intergenic spaces suggest that these clusters may be operons.TIGR ID: PG0303","polyferredoxin","Periplasm, Inner membrane","Residues 140 to 263 share 34% identity with gb|AAB98510.1| (U67501) polyferredoxin (mvhB) in Methanococcus jannaschii.Residues 140 to 263 share 35% identity with emb|CAB52772.1| (AJ243655), polyferredoxin in Methanobacterium thermoautotrophicum.Residues 140 to 263 share 29% identity with gb|AAB84907.1| (AE000824), polyferredoxin in Methanothermobacter thermautotrophicus.This sequence is similar to BT0617.","
InterPro
IPR001450
Domain
4Fe-4S ferredoxin, iron-sulfur binding
PR00353\"[164-175]T\"[253-264]T4FE4SFRDOXIN
PF00037\"[164-187]T\"[212-235]T\"[241-264]TFer4
PS00198\"[171-182]T\"[248-259]T4FE4S_FERREDOXIN
InterPro
IPR007202
Domain
Putative Fe-S cluster
PF04060\"[41-76]TFeS
InterPro
IPR010207
Family
Electron transport complex, RnfABCDGE type, B subunit
TIGR01944\"[2-211]TrnfB
noIPR
unintegrated
unintegrated
G3DSA:3.30.70.20\"[140-210]T\"[212-266]TG3DSA:3.30.70.20
SSF54862\"[90-265]TSSF54862


","BeTs to 4 clades of COG1145COG name: Ferredoxin 2Functional Class: CThe phylogenetic pattern of COG1145 is AMTK--VCEb-Huj-------Number of proteins in this genome belonging to this COG is 2","***** PR00352 (3Fe-4S ferredoxin signature) with a combined E-value of 1.1e-08. PR00352A 166-177 PR00352B 177-187 PR00352C 251-263","Residues 216-263 are 47% similar to a (IRON-SULFUR PROTEIN 4FE-4S TRANSPORT SUBUNIT ELECTRON) protein domain (PD000058) which is seen in Q58593_METJA.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Tue Dec 2 17:11:55 2003","Thu Mar 1 10:59:51 MST 2001","Tue Dec 2 17:11:55 2003","Wed Mar 28 13:05:20 MST 2001","Thu Mar 1 10:59:51 MST 2001","Thu Mar 1 10:59:51 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 10:59:51 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 41 to 76 (E-value = 2.7e-06) place PG0276 in the FeS family which is described as Putative Fe-S cluster (PF04060)Residues 164 to 187 (E-value = 3.8e-06) place PG0276 in the Fer4 family which is described as 4Fe-4S binding domain (PF00037)Residues 241 to 264 (E-value = 9.5e-08) place PG0276 in the Fer4 family which is described as 4Fe-4S binding domain (PF00037)","Tue Dec 2 17:11:55 2003","34540140","","","","","","1","","","PG0303" "PG0277","339699","341027","1329","ATGTTGAGGACTTTCCGAATCGGTGGTATTCACCCCCCCGAAAACAAGTTGTCGGCAGGCAAGCCCGTAGAGGTGTTGCCTATCCCCTCACAGGTAGTCATCCCTCTTGGTCAGCACATCGGTGCACCGGCAACTGCCACGGTCAAGAAAGGGGATGAAGTTAAGGTCGGGACTATCATTGCTCAGGCCGGAGGATTCGTATCAGCTAATATCCACTCATCTGTGTCGGGTAAGGTGCTGAAGATCGATAACGTATACGACTCAAGCGGCTATCCCAAGCCCGCAGTCTTCATTAGCGTAGAAGGTGACGAATGGGAAGAGGGCATCGATCGCTCACCAGCCATCGTCAAAGAATGCAATCTGGATGCAAAAGAAATCGTAGCCAAAATTTCTGCAGCCGGTATTGTGGGTCTTGGCGGTGCTACCTTCCCTACCCATGTGAAGCTGTCCCCTCCTCCGGGCAACAAAGCTGAGATCCTGATCATCAACGCCGTAGAGTGCGAGCCTTATCTGACGAGCGACCATGTCCTTATGCTGGAGCACGGCGAAGAGATCATGATCGGCGTGAGTATCCTGATGAAAGCCATTCAGGTAAACAAGGCCGTCATCGGAGTTGAGAATAATAAGAAAGATGCTATTGCTCACCTCACCAAACTGGCCACTGCATATCCGGGCATAGAGGTAATGCCGTTGAAGGTGCAATATCCTCAAGGCGGTGAGAAGCAGCTGATCGATGCAGTGATCCGCAAGCAGGTAAAAAGCGGTGCCTTGCCTATCAGCACAGGTGCCGTAGTACAAAACGTGGGTACGGTATTCGCCGTGTACGAAGCAGTACAGAAGAACAAGCCTCTGGTCGAGCGCATCGTGACGGTTACAGGAAAAAAACTGTCTCGTCCGTCTAACCTCCTCGTTCGTATAGGTACTCCTATTGCGGCTTTGATCGAAGCAGCAGGTGGCTTGCCGGAGAATACGGGCAAGATCATCGGCGGAGGTCCGATGATGGGACGCGCTCTGCTGTCACCGGATGTGCCTGTGACCAAAGGCAGCTCCGGAGTATTGATTCTCGATAGAGAAGAGGCAGTTCGCAAGCCTATGCGCGACTGTATCCGATGCGCCAAGTGCGTCGGAGTGTGTCCGATGGGACTCAATCCGGCTTTCCTTATGCGCGACACCTTATATAAGAGCTGGGAAACAGCGGAAAAAGGCAACGTGGTTGACTGTATCGAATGCGGTTCGTGCAGCTTCACCTGTCCGGCCAACCGTCCTCTGCTGGATTATATCCGCCAAGCCAAGAAGACTGTGATGGGTATCCAAAGAGCACGTAAGCAA","9.10","11.23","47050","MLRTFRIGGIHPPENKLSAGKPVEVLPIPSQVVIPLGQHIGAPATATVKKGDEVKVGTIIAQAGGFVSANIHSSVSGKVLKIDNVYDSSGYPKPAVFISVEGDEWEEGIDRSPAIVKECNLDAKEIVAKISAAGIVGLGGATFPTHVKLSPPPGNKAEILIINAVECEPYLTSDHVLMLEHGEEIMIGVSILMKAIQVNKAVIGVENNKKDAIAHLTKLATAYPGIEVMPLKVQYPQGGEKQLIDAVIRKQVKSGALPISTGAVVQNVGTVFAVYEAVQKNKPLVERIVTVTGKKLSRPSNLLVRIGTPIAALIEAAGGLPENTGKIIGGGPMMGRALLSPDVPVTKGSSGVLILDREEAVRKPMRDCIRCAKCVGVCPMGLNPAFLMRDTLYKSWETAEKGNVVDCIECGSCSFTCPANRPLLDYIRQAKKTVMGIQRARKQ","339699 341027","This gene belongs to a conserved gene cluster on the positive strand, PG0275-PG0281, which is repeated on the negative strand at PG1906-PG1911. The similarity of PG0278 to PG1910, PG0280 to PG1908 and PG0281 to PG1907 suggests preservation of gene order. Rho independent terminators have been located on the appropriate strand immediately downstream of PG0281 and PG1906. The location of these terminators, similarity of gene function, and short (<42 bp) intergenic spaces suggest that these clusters may be operons.TIGR ID: PG0304","electron transfer protein (RnfC protein)","Cytoplasm, Inner membrane","Residues 4 to 442 share 46% identity with gb|AAD35335.1|AE001708_3 (AE001708), an electron transport complex protein, putative in Thermotoga maritima.Residues 2 to 443 share 40% identity with prf||2009377B, the rnfC protein in Rhodobacter capsulatus.Residues 8 to 443 share 37% identity with pir||E64136, the rnfC protein homolog in Haemophilus influenzae (strain Rd KW20).This region shares a similar degree of identity with several additional bacterial RnfC proteins.Thiss equence is similar to BT0618.","
InterPro
IPR001450
Domain
4Fe-4S ferredoxin, iron-sulfur binding
PS00198\"[368-379]T\"[407-418]T4FE4S_FERREDOXIN
InterPro
IPR009051
Domain
Alpha-helical ferredoxin
SSF46548\"[314-428]THelical_ferredxn
InterPro
IPR010208
Family
Electron transport complex, RnfABCDGE type, C subunit
TIGR01945\"[2-438]TrnfC
InterPro
IPR011538
Domain
Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit
PF01512\"[107-332]TComplex1_51K
InterPro
IPR012285
Domain
Fumarate reductase, C-terminal
G3DSA:1.10.1060.10\"[335-438]TFum_reductase_C
noIPR
unintegrated
unintegrated
PD025201\"[13-336]TPD025201


","BeTs to 4 clades of COG1726COG name: Membrane-bound Fe-S proteins, RfnC familyFunctional Class: CThe phylogenetic pattern of COG1726 is ------v-e--h----ol---Number of proteins in this genome belonging to this COG is 1","***** IPB001949 (Respiratory-chain NADH dehydrogenase 51 Kd subunit) with a combined E-value of 1e-07. IPB001949A 123-152 IPB001949B 158-190 IPB001949C 211-252","Residues 366-420 are 40% similar to a (IRON-SULFUR PROTEIN 4FE-4S TRANSPORT SUBUNIT ELECTRON) protein domain (PD000058) which is seen in P77611_ECOLI.Residues 368-443 are 40% similar to a (NITROGEN FIXATION IRON-SULPHUR PROTEIN) protein domain (PD121840) which is seen in Q52716_RHOCA.Residues 251-347 are 44% similar to a (NITROGEN FIXATION PROTEIN IRON-SULFUR OF RNFC SECTION) protein domain (PD023862) which is seen in P71397_HAEIN.Residues 124-293 are 43% similar to a (SUBUNIT IRON-SULFUR OXIDOREDUCTASE DEHYDROGENASE NAD) protein domain (PD002676) which is seen in Q52716_RHOCA.Residues 2-105 are 42% similar to a (IRON-SULFUR OF PROTEIN SECTION NITROGEN FIXATION OUTER) protein domain (PD023863) which is seen in Q52716_RHOCA.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Tue Dec 2 17:14:28 2003","Thu Apr 26 11:58:52 MDT 2001","Tue Dec 2 17:14:28 2003","Wed Mar 28 13:06:44 MST 2001","Thu Mar 1 10:55:39 MST 2001","Thu Mar 1 10:55:39 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 10:55:39 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 19 to 436 (E-value = 5.2e-05) place PG0277 in the NQRA family which is described as Na(+)-translocating NADH-quinone reductase subunit A (NQRA) (PF05896)Residues 107 to 332 (E-value = 6.8e-23) place PG0277 in the Complex1_51K family which is described as Respiratory-chain NADH dehydrogenase 51 Kd subunit (PF01512)","Tue Dec 2 17:14:28 2003","34540141","","","","","","1","","","PG0304" "PG0278","341046","342026","981","ATGGAAAATAAAATTATCATTTCTCCTTCACCGCACATCCACAGCGGAGACAGCATCAAAAAGAATATGTATGGTGTGCTGATTGCCCTCTTGCCTGCCTTGGCCATGTCGGTATATCAGTTTGGAATCGGTGCGGTGATCGTAACGGCAGTATCCGTTCTTACTTGTTGCATCGTGGAATACCTGATCAGCAAATATATGTTGGGCAAGGAGCCTACCATCATGGACGGCTCAGCTATCTTGACCGGCGTATTGCTGGCTTTCAACCTGCCGAGCAACCTGCCCGTTTGGATCATTATCATCGGTGCAGTAGTAGCTATCGCATTGGGCAAGATGTCCTTCGGCGGCTTGGGGAACAACATCTTCAACCCCGCTTTGGTCGGTCGTGTATTCCTCCTGATCTCTTTCCCTGCCCAGATGACTCTCTGGCCTACCGAAGGACAGATGACTTCCTATCTGGATGCCGAGACCGGTGCTACGCCTCTCGGCCTGATGAAAGCAGCAATGAGCGGCGACACCTCGGCTTTGGCTAATATCCCCACAGACCTGCACATGTTTATCGGTGAAGCAGGTTCTTTGGGTGAAGTCAGTGCTATCGCATTGCTTCTCGGATTGGTCTATATGCTGTACAAGAAGATTATCACGTGGCATATCCCCGTGTCTATCTTCGCATCTGTGATCGTACTGGCAGGTATTCTGCACTTGGCCAGCCCCACATCCTTCCCGGCCACTCCGTGGTTCCACCTGTTCTCCGGCGGTATGATGCTCGGAGCCATCTTCATGGCCACGGACTATGTGACTTCGCCGATGACCAAGTCCGGACAGATCCTTTACGGCTGTCTGATCGGTTTGCTGACCGTCGTGATCCGTACATTCGGGGCTTATCCGGAAGGAATGTCATTCGCCATCCTAATTATGAACGGTATGACACCTCTGATCAACACTTATATGAAACCTAAACATTTTGGAGGAAAGAACAAA","8.40","3.53","34816","MENKIIISPSPHIHSGDSIKKNMYGVLIALLPALAMSVYQFGIGAVIVTAVSVLTCCIVEYLISKYMLGKEPTIMDGSAILTGVLLAFNLPSNLPVWIIIIGAVVAIALGKMSFGGLGNNIFNPALVGRVFLLISFPAQMTLWPTEGQMTSYLDAETGATPLGLMKAAMSGDTSALANIPTDLHMFIGEAGSLGEVSAIALLLGLVYMLYKKIITWHIPVSIFASVIVLAGILHLASPTSFPATPWFHLFSGGMMLGAIFMATDYVTSPMTKSGQILYGCLIGLLTVVIRTFGAYPEGMSFAILIMNGMTPLINTYMKPKHFGGKNK","341046 342026","This gene belongs to a conserved gene cluster on the positive strand, PG0275-PG0281, which is repeated on the negative strand at PG1906-PG1911. The similarity of PG0278 to PG1910, PG0280 to PG1908 and PG0281 to PG1907 suggests preservation of gene order. Rho independent terminators have been located on the appropriate strand immediately downstream of PG0281 and PG1906. The location of these terminators, similarity of gene function, and short (<42 bp) intergenic spaces suggest that these clusters may be operons.TIGR ID: PG0305","Na-translocating NADH-quinone reductase, Nqr2 subunit","Inner membrane, Cytoplasm","Residues 17 to 323 share 44% identity with gb|AAD35336.1|AE001708_4 (AE001708) Na-translocating NADH-quinone reductase, Nqr2 subunitin Thermotoga maritima.Residues 18 to 323 share 35% identity with emb|CAC03727.1| (AJ297529), the rnfD protein in Pseudomonas stutzeri A15.Residues 23 to 387 share 33% identity with pir||F64136, the rnfD protein homolog HI1686 in Haemophilus influenzae (strain Rd KW20).This sequence is similar to BT0619.","
InterPro
IPR004338
Family
NQR2 and RnfD
PF03116\"[4-325]TNQR2_RnfD_RnfE
InterPro
IPR011303
Family
Electron transport complex, RnfABCDGE type, D subunit
TIGR01946\"[10-324]TrnfD


","BeTs to 4 clades of COG1805COG name: Uncharacterized membrane protein, RnfD familyFunctional Class: SThe phylogenetic pattern of COG1805 is ------vce--H------in-Number of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","Residues 18-289 are 34% similar to a (UBIQUINONE PROTEIN TRANSMEMBRANE NADH DEHYDROGENASE) protein domain (PD014218) which is seen in RNFD_RHOCA.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Tue Dec 2 17:16:51 2003","Wed Mar 28 10:54:18 MST 2001","Tue Dec 2 17:16:51 2003","Wed Mar 28 10:50:55 MST 2001","","Thu Mar 1 10:50:30 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 12 to 317 share 31% identity with PG1910 NADH dehydrogenase (ubiquinone).","Thu Mar 1 10:50:30 MST 2001","Thu Mar 1 10:50:30 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 4 to 325 (E-value = 2.9e-88) place PG0278 in the NQR2_RnfD_RnfE family which is described as NQR2, RnfD, RnfE family (PF03116)","Wed Mar 28 10:50:55 MST 2001","34540142","","","","","","1","","","PG0305" "PG0279","342056","342700","645","ATGTTGCTCTCTTTGACGGGCTTCTGTATCGTTGTTTCTGCTGCTCTTGGCATGATGAACGAAATAACGAAAGAGCCTATTGCAAAGGCGGAAGTGGATGCTAAAGTCACCGCTATCAAGCAGGTAGTCAATGCCTTCGACAACAATCCGTACGAAGAGAGATTCGAAGTTGATGTAGATGGAGCCAAGCTCACCGTATTCCCGGCCAAAAAAGGTCAGGAAATAGTGGGTTACGCTGTAGAAAGCTATACAGACAAGGGCTTTAGCGGTAAGTTCACTGTGATGTACGGATTCGATATGGATGGCAAAATCCACGACTTCTCCGTGCTCAGCCACAGCGAAACACCCGGTCTGGGAGCCAAGATGCAAGAGTGGTTCCGAACGCCGGCCAAAAAAGAAGGACTGATCCAAGATGTACGTGGTGTACAGATGAGTGATACTCCTCTGACTGTTTCCAAAGACGGCGGTCAAGTGGATGCTATCACAGCCGCGACGATCAGTAGCCGAGCCTTTTTGGATGCAATGGATCGTGCCTACAGAGGTTTCAAAGCCGCTCAAGGCAGTGCCGGACAGGCTCAGGAGTCTGTCGAGGCAGCTCCGGCTGATTCTACGATAAATACTAACACAGATAATACCGAAGCGCAA","4.60","-8.56","23079","MLLSLTGFCIVVSAALGMMNEITKEPIAKAEVDAKVTAIKQVVNAFDNNPYEERFEVDVDGAKLTVFPAKKGQEIVGYAVESYTDKGFSGKFTVMYGFDMDGKIHDFSVLSHSETPGLGAKMQEWFRTPAKKEGLIQDVRGVQMSDTPLTVSKDGGQVDAITAATISSRAFLDAMDRAYRGFKAAQGSAGQAQESVEAAPADSTINTNTDNTEAQ","342026 342700","This gene belongs to a conserved gene cluster on the positive strand, PG0275-PG0281, which is repeated on the negative strand at PG1906-PG1911. The similarity of PG0278 to PG1910, PG0280 to PG1908 and PG0281 to PG1907 suggests preservation of gene order. Rho independent terminators have been located on the appropriate strand immediately downstream of PG0281 and PG1906. The location of these terminators, similarity of gene function, and short (<42 bp) intergenic spaces suggest that these clusters may be operons.TIGR ID: PG0306","conserved hypothetical protein (possible nitrogen fixing protein RnfG)","Periplasm, Inner membrane","Several weak hits using gapped BLAST to hypothetical proteins and proteins of probable function. Residues 3 to 195 are 32% similar to emb|CAC03728.1| (AJ297529), the RnfG protein in Pseudomonas stutzeri A15. Residues 3 to 181 are 30% similar to emb|CAA72665.1| (Y11913), the RnfG protein in Rhodobacter capsulatus.","
InterPro
IPR007329
Domain
FMN-binding
PF04205\"[87-182]TFMN_bind
InterPro
IPR010209
Family
Electron transport complex, RnfABCDGE type, G subunit
PIRSF006091\"[1-197]TE_trnspt_RnfG
TIGR01947\"[2-184]TrnfG
noIPR
unintegrated
unintegrated
SSF55729\"[19-135]TSSF55729


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 5-181 are 30% similar to a (PROTEIN TRANSMEMBRANE GENES RNFA RNFF FDXC FDXN ORF14) protein domain (PD017026) which is seen in RNFG_RHOCA.","","Thu Jun 14 10:40:43 MDT 2001","","Thu Jun 14 10:40:43 MDT 2001","Thu Jun 14 10:40:43 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 10:40:43 MDT 2001","Thu Jun 14 10:40:43 MDT 2001","","Tue Jun 19 15:02:56 MDT 2001","Tue Jun 19 15:02:56 MDT 2001","Tue Jun 19 15:02:56 MDT 2001","Thu Mar 1 10:44:47 MST 2001","","Tue Jun 19 15:02:56 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 10:44:47 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 80 to 182 (E-value = 1.3e-19) place PG0279 in the FMN_bind family which is described as FMN-binding domain (PF04205)","Tue Jun 19 15:02:56 MDT 2001","34540143","","","","","","1","","","PG0306" "PG0280","342700","343287","588","ATGAGTAAGAATTTGAGTGTTATTATAAACGGCATTATCAAGGAGAACCCGACATTCGTCCTCCTCCTCGGTATGTGTCCTACGTTGGCCACGACAACGTCGGCCATCAACGGTATGAGTATGGGACTGGCCACCATGTTTGTATTGATCTGCTCCAACATGGTAGTATCCTTGGTCAAGAATCTCATCCCCGATATGGTTCGTATCCCGGCTTTTATTGTCATCATTGCAGGTTTCGTGACGATATTGCAGATGCTTATCAAGGCTTATATGCCGGATTTGGACAAGAGTCTCGGTATCTTCATCCCACTGATCGTGGTGAACTGTATCGTACTCGGTCGTGCTGAAGCCGTTGCATCGAAAAAAGGTCTGCTACACTCCATGTTCGACGGTATCGGTATCGGATTGGGCTTTACCCTCAGTTTGACTGTTCTCGGTATTGTCCGTGAGCTTTTGGGTAGCGGTAAGCTTTTCGACTTTGCAGTTTTCAATGAATCCTATGGAGCATTGATCTTCGTATTGGCACCCGGAGCTTTCATCGCTTTGGGCTACCTGATTGCCTTGGTGAACAAAATGAAGAAAAAAGCA","10.00","6.08","20870","MSKNLSVIINGIIKENPTFVLLLGMCPTLATTTSAINGMSMGLATMFVLICSNMVVSLVKNLIPDMVRIPAFIVIIAGFVTILQMLIKAYMPDLDKSLGIFIPLIVVNCIVLGRAEAVASKKGLLHSMFDGIGIGLGFTLSLTVLGIVRELLGSGKLFDFAVFNESYGALIFVLAPGAFIALGYLIALVNKMKKKA","342700 343287","This gene belongs to a conserved gene cluster on the positive strand, PG0275-PG0281, which is repeated on the negative strand at PG1906-PG1911. The similarity of PG0278 to PG1910, PG0280 to PG1908 and PG0281 to PG1907 suggests preservation of gene order. Rho independent terminators have been located on the appropriate strand immediately downstream of PG0281 and PG1906. The location of these terminators, similarity of gene function, and short (<42 bp) intergenic spaces suggest that these clusters may be operons.TIGR ID: PG0307","Na+-translocating NADH-quinone reductase","Inner membrane, Cytoplasm","Residues 5 to 188 share 58% identity with gb|AAD35338.1|AE001708_6 (AE001708), an Na-translocating NADH-quinone reductase, Nqr4 subunit in Thermotoga maritima.Residues 7 to 192 share 48% identity with pir||I64174 probable sodium-translocating NADH dehydrogenase (ubiquinone) (EC 1.6.5.-) nqrD chain HI1688 [similarity] in Haemophilus influenzae (strain Rd KW20.Residues 10 to 188 share 47% identity with pir||S39906, an rnfE protein precursor in Rhodobacter capsulatus.","
InterPro
IPR003667
Family
RnfA-Nqr electron transport subunit
PF02508\"[1-187]TRnf-Nqr
InterPro
IPR010968
Family
Electron transport complex, RnfABCDGE type, E subunit
TIGR01948\"[5-195]TrnfE
noIPR
unintegrated
unintegrated
PIRSF006102\"[1-196]TNQR_DE


","BeTs to 3 clades of COG1347COG name: Na+-translocating NADH-quinone reductase, subunit 5Functional Class: CThe phylogenetic pattern of COG1347 is ------v-e--H------in-Number of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","Residues 7-157 are 54% similar to a (UBIQUINONE REDUCTASE TRANSMEMBRANE) protein domain (PD006282) which is seen in YDGQ_HAEIN.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Wed Mar 28 13:12:12 MST 2001","Thu Mar 1 10:40:37 MST 2001","Thu Mar 1 10:40:37 MST 2001","Fri Mar 9 15:35:20 MST 2001","","Thu Mar 1 10:40:37 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 3 to 186 share 35% identity with PG1908, a Na+-translocating NADH-quinone reductase.","Thu Mar 1 10:40:37 MST 2001","Thu Mar 1 10:40:37 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 1 to 187 (E-value = 3.2e-77) place PG0280 in the Rnf-Nqr family which is described as Rnf-Nqr subunit, membrane protein (PF02508)","Fri Mar 9 15:35:20 MST 2001","34540144","","","","","","1","","","PG0307" "PG0281","343315","343884","570","ATGGAATTTTTCATGTTATTCATAGCGGCGGTTTTCGTTAATAACGTCGTGCTGTCGCAGTTCCTCGGTATATGCCCATTCTTAGGCGTATCGAAGAAGGTAGACACCTCAATCGGTATGGGTGCAGCCGTGACATTCGTATTGGCACTGGCTACCTTGGTTACCTTCCTGATTCAGAAGTTCGTTTTGGATCGTTTCGGATTGGGCTTTATGCAGACCATTGCATTTATTTTGGTCATTGCCGCCTTGGTGCAGATGGTGGAGATCATACTCAAGAAAGTATCTCCTCCCCTCTATCAGGCACTGGGTGTATTCTTGCCCTTGATTACGACGAACTGCTGTGTGCTCGGTGTGGCTATTTTGGTTATCCAGAAGGATTATACCCTGCTCCAGAGCTTCGTCTATGCAATATCCACGGCTATCGGTTTCACCTTGGCAATGGTTACTTTCGCAGGTATTCGAGAGCAACTCGATATGACCAATCTCCCCAAAGCTATGAAGGGAATACCTTCGGCACTCTTGGCTGCCGGTATATTGGCTATGGCTTTCATGGGCTTCAGCGGTATCGCC","8.80","2.84","20360","MEFFMLFIAAVFVNNVVLSQFLGICPFLGVSKKVDTSIGMGAAVTFVLALATLVTFLIQKFVLDRFGLGFMQTIAFILVIAALVQMVEIILKKVSPPLYQALGVFLPLITTNCCVLGVAILVIQKDYTLLQSFVYAISTAIGFTLAMVTFAGIREQLDMTNLPKAMKGIPSALLAAGILAMAFMGFSGIA","343315 343884","This gene belongs to a conserved gene cluster on the positive strand, PG0275-PG0281, which is repeated on the negative strand at PG1906-PG1911. The similarity of PG0278 to PG1910, PG0280 to PG1908 and PG0281 to PG1907 suggests preservation of gene order. Rho independent terminators have been located on the appropriate strand immediately downstream of PG0281 and PG1906. The location of these terminators, similarity of gene function, and short (<42 bp) intergenic spaces suggest that these clusters may be operons.TIGR ID: PG0308","Na+-translocating NADH-quinone oxidoreductase","Inner membrane, Cytoplasm","Residues 2 to 189 share 44% identity with gb|AAF94178.1| (AE004183), a RnfA-related protein in Vibrio cholerae.Residues 1 to 189 share 49% identity with gb|AAD35339.1|AE001708_7 (AE001708), a Na-translocating NADH-quinone reductase, Nqr5 subunit in Thermotoga maritima.Residues 2 to 189 share 43% identity with emb|CAA51401.1| (X72888), rnfA in Rhodobacter capsulatus.","
InterPro
IPR003667
Family
RnfA-Nqr electron transport subunit
PF02508\"[2-190]TRnf-Nqr
InterPro
IPR011293
Family
Electron transport complex, RnfABCDGE type, A subunit
TIGR01943\"[1-190]TrnfA
noIPR
unintegrated
unintegrated
PIRSF006102\"[1-190]TNQR_DE


","BeTs to 3 clades of COG2209COG name: Na+-translocating NADH-quinone oxidoreductase, subunit 5 (NqrE)Functional Class: CThe phylogenetic pattern of COG2209 is ------v-e--H------in-Number of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","Residues 2-189 are 47% similar to a (UBIQUINONE REDUCTASE TRANSMEMBRANE) protein domain (PD006282) which is seen in P76181_ECOLI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Wed Mar 28 13:14:13 MST 2001","Thu Mar 1 10:34:49 MST 2001","Thu Mar 1 10:34:49 MST 2001","Wed Mar 28 13:12:53 MST 2001","","Thu Mar 1 10:34:49 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1 to 189 share 38% identity with PG1907, a Na+-translocating NADH-quinone reductase.Residues 14 to 184 share 31% identity with PG1908, a Na+-translocating NADH-quinone reductase.","Thu Mar 1 10:34:49 MST 2001","Thu Mar 1 10:34:49 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 2 to 190 (E-value = 4e-76) place PG0281 in the Rnf-Nqr family which is described as Rnf-Nqr subunit, membrane protein (PF02508)","Wed Mar 28 13:12:53 MST 2001","34540145","","","","","","1","","","PG0308" "PG0283","345113","344103","1011","ATGAAACGTTGGTCAGGTTTAGCGGCCGTTCCGGGGATGATCATTCTCGGTGCGGCCTTTTTTTCTTGCCGGAAAGCACCTGCCTATACGGTATTGCAGGGGGAGATATTCCATACCTATTATCATATCAAATATAAGGGAGAGGCAGATCATTCGCAGCGAGTGGATAGCGTATTCAGAGCTTTCAATCATTCCCTTAATCCGTTCGACAGTACCAGTATCATTGCCGGAGTGAATCGGAATCTTCCGGTCAGGACTGACAGTATGTTCCGCCGGGTATTTCGTCGGGCGCAGGAGATTGCAGCCGTTTCCGGCGGCTCTTACGATATTACTTGCTCTCCGCTGATCAATGCTTGGGGTTTCGGTTTCGAACATAAAGAGGACGTGACTGCACAGTTGATCGACAGCATCAGGGCCTTTGTCGGTTACCGGAGGGTACGATTGGATGGCGAGACGGTTGTTAAGGATGATCCGCGCACTACGCTGAACACCTCTTCCATCGCCAAAGGATATGCTTCGGATCTGGTGGGCGAAGCCTTGGCTGCTCATGGGATCGGGGACTATATGGTAGAGATCGGTGGAGAGGTTGCTTTCAATGGCCTCAATCCTCAAGGCAAGCCTTGGCGCATAGGTGTAAGTAAACCGCAGGATGACAGTCTGGGCTTGGCGATGCAGGAGTTCGAACTCGTCGTAGAGCTTAGTGGGAAAGGGGGCTTGGCGACATCGGGCAACTACCGGAATTTCTATGTTCGGGATGGGAAGAAGTATGCACATACGATCGATCCGCTTAGCGGCTATCCTGTGCAGACGGATGTGCTGAGTGCCACAGTCATTGCTCCCGATTGTATGACGGCTGATGCCTTGGCTACTACTTTTATGGTGGTCGGTTCGGAGCGTGTGCCTGCTATTGCCGCCGAATTCCCCGGTGTGGACTATATGCTTATTTTGTCCGATGGAGACGGTTCTTATAAGACTGTGATGAACGAAGGCTTCCGGAAACGAGTAGCCAAG","7.20","0.55","36764","MKRWSGLAAVPGMIILGAAFFSCRKAPAYTVLQGEIFHTYYHIKYKGEADHSQRVDSVFRAFNHSLNPFDSTSIIAGVNRNLPVRTDSMFRRVFRRAQEIAAVSGGSYDITCSPLINAWGFGFEHKEDVTAQLIDSIRAFVGYRRVRLDGETVVKDDPRTTLNTSSIAKGYASDLVGEALAAHGIGDYMVEIGGEVAFNGLNPQGKPWRIGVSKPQDDSLGLAMQEFELVVELSGKGGLATSGNYRNFYVRDGKKYAHTIDPLSGYPVQTDVLSATVIAPDCMTADALATTFMVVGSERVPAIAAEFPGVDYMLILSDGDGSYKTVMNEGFRKRVAK","345113 344103 [Shorter 370 990 99]","TIGR ID: PG0309","thiamin biosynthesis lipoprotein ApbE","Cytoplasm","This sequence is weakly similar to CT077.Many moderately significant hits in gapped BLAST to thiamin biosynthesis lipoproteins; e.g. residues 1-337 are 33% similar to AE004300 of Vibrio cholerae, residues 14-333 are 31% similar to AE006171 of Pasteurella multocida, residues 5-333 are 32% similar to P44550 of Haemophilus influenzae.","
InterPro
IPR003374
Family
ApbE-like lipoprotein
PF02424\"[8-320]TApbE
noIPR
unintegrated
unintegrated
PS51257\"[1-23]TPROKAR_LIPOPROTEIN


","BeTs to 5 clades of COG1477COG name: Membrane-associated lipoprotein ApbE involved in thiamine biosynthesisFunctional Class: HThe phylogenetic pattern of COG1477 is -----qv-e--h-----lin-Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 53-318 are 33% similar to a (PROTEIN THIAMINE BIOSYNTHESIS LIPOPROTEIN) protein domain (PD009949) which is seen in APBE_HAEIN.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Jun 6 09:50:56 MDT 2001","Wed Jun 6 09:50:56 MDT 2001","Mon Jan 8 14:59:49 2001","","Wed Jun 6 09:50:56 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Jun 6 09:50:56 MDT 2001","-54% similar to PDB:2O18 Crystal structure of a Thiamine biosynthesis lipoprotein apbE, NorthEast Strcutural Genomics target ER559 (E_value = 2.3E_39);-49% similar to PDB:1VRM Crystal structure of hypothetical protein (TM1553) from THERMOTOGA MARITIMA at 1.58 A resolution (E_value = 4.0E_23);-54% similar to PDB:2CC1 CRYSTAL STRUCTURE OF THE CLASS A BETA-LACTAMASE FROM MYCOBACTERIUM FORTUITUM (E_value = 4.0E_23);-57% similar to PDB:2J5T GLUTAMATE 5-KINASE FROM ESCHERICHIA COLI COMPLEXED WITH GLUTAMATE (E_value = 4.0E_23);-57% similar to PDB:2J5V GLUTAMATE 5-KINASE FROM ESCHERICHIA COLI COMPLEXED WITH GLUTAMYL-5-PHOSPHATE AND PYROGLUTAMIC ACID (E_value = 4.0E_23);","","","Residues 8 to 320 (E-value = 1.9e-57) place PG0283 in the ApbE family which is described as ApbE family (PF02424)","Wed Jun 6 09:50:56 MDT 2001","34540146","","","","","","1","","","PG0309" "PG0284","345649","345113","537","ATGAAACAGATTCCTCAAGATTTTCGTTTGATAGAAGATTTCTTCCGCACGCGCAGATCTGTACGCAAGTTTATCGATCGTCCTGTGGAGGAAGAGAAGTTGATGGCCATCCTCGAAGCCGGACGCATAGCTCCTTCGGCACATAATTACCAGCCGTGGCATTTCCTCGTGGTCAGAGAAGAAGAGGGCCGCAAACGCTTGGCTCCCTGTTCCCAACAACCTTGGTTCCCGGGTGCCCCCATCTATATCATCACGCTTGGCGATCATCAAAGAGCATGGAAGCGAGGAGCAGGCGATTCGGTAGACATCGATACCTCTATCGCCATGACTTATATGATGCTGGAAGCACATAGTCTGGGACTTGGATGTACGTGGGTCTGTGCTTTCGATCAAGCTCTTTGTTCGGAGATCTTCGACATCCCTTCGCACATGACACCTGTTTCCATATTGGCTCTCGGCTATGGCGATCCGACCGTACCTCCGCGTGAGGCTTTCAATCGCAAAACCATTGAAGAGGTAGTCAGCTTCGAGAAATTA","6.40","-1.98","20479","MKQIPQDFRLIEDFFRTRRSVRKFIDRPVEEEKLMAILEAGRIAPSAHNYQPWHFLVVREEEGRKRLAPCSQQPWFPGAPIYIITLGDHQRAWKRGAGDSVDIDTSIAMTYMMLEAHSLGLGCTWVCAFDQALCSEIFDIPSHMTPVSILALGYGDPTVPPREAFNRKTIEEVVSFEKL","345649 345113","TIGR ID: PG0310","NAD(P)H-oxidoreductase/nitroreductase","Cytoplasm","Residues 13 to 178 share 35% identity with ref|NP_069064.1| NADH oxidase (noxC) in Archaeoglobus fulgidus.Residues 16 to 166 share 36% identity with gb|AAB84626.1| (AE000801) NADPH-oxidoreductase in Methanothermobacter thermautotrophicus.Residues 11 to 168 share 34% identity with dbj|BAB13707.1| (AB040150), a thermophilic NAD(P)H-flavin oxidoreductasein Paenibacillus sp. A11-2.","
InterPro
IPR000415
Family
Nitroreductase
PF00881\"[15-154]TNitroreductase
noIPR
unintegrated
unintegrated
G3DSA:3.40.109.10\"[11-177]TG3DSA:3.40.109.10
PIRSF000232\"[9-177]TNADHdh_nitroRD
PTHR23026\"[40-179]TPTHR23026
PTHR23026:SF48\"[40-179]TPTHR23026:SF48
SSF55469\"[11-176]TSSF55469


","BeTs to 9 clades of COG0778COG name: Nitroreductase family proteinsFunctional Class: CThe phylogenetic pattern of COG0778 is AmT--qVcEBRHUJ-------Number of proteins in this genome belonging to this COG is 3","***** PF00881 (Nitroreductase family) with a combined E-value of 7.7e-08. PF00881 45-57","Residues 13-178 are 35% similar to a (PROTEIN OXIDOREDUCTASE FLAVOPROTEIN FMN) protein domain (PD001645) which is seen in Y226_ARCFU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Mar 1 10:27:54 MST 2001","Thu Mar 1 10:27:54 MST 2001","Thu Apr 26 12:16:09 MDT 2001","Thu Mar 1 10:27:54 MST 2001","Thu Mar 1 10:27:54 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 5 to 178 share 35% identity with PG0662, a possible NADH oxidase.Residues 13 to 168 share 24% identity with PG0596, a NADPH-oxidoreductase.","Thu Mar 1 10:27:54 MST 2001","Thu Mar 1 10:27:54 MST 2001","-50% similar to PDB:1ZCH Structure of the hypothetical oxidoreductase YcnD from Bacillus subtilis (E_value = 3.0E_11);-45% similar to PDB:2ISJ BluB bound to oxidized FMN (E_value = 1.5E_10);-45% similar to PDB:2ISK BluB bound to flavin anion (charge transfer complex) (E_value = 1.5E_10);-45% similar to PDB:2ISL BluB bound to reduced flavin (FMNH2) and molecular oxygen. (clear crystal form) (E_value = 1.5E_10);","","","Residues 15 to 154 (E-value = 9.1e-35) place PG0284 in the Nitroreductase family which is described as Nitroreductase family (PF00881)","Thu Apr 26 12:16:09 MDT 2001","34540147","","","","","","1","","","PG0310" "PG0285","346602","345652","951","ATGATAGATATTTCTGTAGTAATCCCTCTGCTGAACGAGGCCGAGTCGATCCCCGAACTTTTTGCCTGGATCAGGCGTGTAATGAATGAGCATGGCTATTCCTATGAGGTCATCTTCGTAGATGATGGGAGTACCGACGGCTCCTGGAGTGTGATCGAACGTTTGCAAGCAGAGCATCCCGAGGTCAAAGGGATCAAATTCCGCCGCAACTACGGCAAGTCGGCCGGTCTCCAATGTGGTTTTGCCCGCACACAGGGGCAGGTAGTCATAACGATGGATGCGGATTTGCAGGATAGTCCGGATGAGATCCCGGAGCTGTACCGGATGGTGACAGAAGGGGGATATGACTTGGTAAGCGGTTGGAAGCGTAAGCGGTACGATCCTCTGTTCAGCAAGAATCTGCCCTCAAAGCTTTTCAATGCTACAGCCCGAAAGCTGTCCGGCATCAAGCTACACGATTTTAATTGTGGTTTGAAAGCATACCGACACGAGGTAGTGGAGAATATCGAGTTGTACAACGATATGCACCGTTACATTCCATATTTGGCCAAATCCGCCGGTTTCGGACGCATCGGGGAGAAGGTAGTACAGCATCAGGCGCGTAAATACGGCTCGAGCAAGTTCGGTATCAGCCGTTTTTTCAATGGCTATCTCGATTTGCTTACGCTTTGGTTTATCAGCAAGTTCGGACGCAAGCCGATGCACTTCTTCGGGCTGCTCGGTTCAGGCATGTTCCTAATCGGCTTCATAGCTTTGGCCGTTGTCCTTGTCAATAAGTTGTCCGCTATAATCATGCATACGCAGGCACCTTTGGTGACGGATCGGCCTTATTTCTTCATCGCGCTGACGGCGATGATTATCGGCACGCAACTGTTCCTAACCGGATTTGTCGGTGAGATGATCAGCCGTCAGGCTTCGGACAGAAACAACTATAAAATAGAGAAAGAGATA","9.70","6.84","36064","MIDISVVIPLLNEAESIPELFAWIRRVMNEHGYSYEVIFVDDGSTDGSWSVIERLQAEHPEVKGIKFRRNYGKSAGLQCGFARTQGQVVITMDADLQDSPDEIPELYRMVTEGGYDLVSGWKRKRYDPLFSKNLPSKLFNATARKLSGIKLHDFNCGLKAYRHEVVENIELYNDMHRYIPYLAKSAGFGRIGEKVVQHQARKYGSSKFGISRFFNGYLDLLTLWFISKFGRKPMHFFGLLGSGMFLIGFIALAVVLVNKLSAIIMHTQAPLVTDRPYFFIALTAMIIGTQLFLTGFVGEMISRQASDRNNYKIEKEI","346602 345652","TIGR ID: PG0311","glycosyltransferase","Inner membrane, Cytoplasm","Residues 4 to 317 share 40% identity with gb|AAC07699.1| (AE000762), a dolichol-phosphate mannosyltransferase in Aquifex aeolicus.Residues 4 to 307 share 34% identity with gb|AAG57385.1|AE005458_2 (AE005458), a putative sugar transferase in Escherichia coli O157:H7.Residues 4 to 307 share 32% identity with gb|AAG06941.1|AE004776_4 (AE004776), a probable glycosyl transferase in Pseudomonas aeruginosa.This region shares a similar degree of identity with a number of additional bacterial dolichol-phosphate-mannosyltransferases.This sequence is similar to BT4564.","
InterPro
IPR001173
Domain
Glycosyl transferase, family 2
PF00535\"[5-170]TGlycos_transf_2
noIPR
unintegrated
unintegrated
G3DSA:3.90.550.10\"[4-169]TG3DSA:3.90.550.10
PTHR10859\"[11-287]TPTHR10859
SSF53448\"[4-225]TSSF53448


","BeTs to 14 clades of COG0463COG name: Glycosyltransferases involved in cell wall biogenesisFunctional Class: MThe phylogenetic pattern of COG0463 is AMTKYQVCEBRHujGPo---XNumber of proteins in this genome belonging to this COG is 8","***** PF00535 (Glycosyl transferases) with a combined E-value of 1.2e-07. PF00535A 36-46 PF00535B 86-95","Residues 4-77 are 47% similar to a (PROTEIN TRANSFERASE GLYCOSYLTRANSFERASE PUTATIVE) protein domain (PD000196) which is seen in O67737_AQUAE.Residues 80-208 are 48% similar to a (PROTEIN TRANSFERASE GLYCOSYLTRANSFERASE) protein domain (PD001307) which is seen in O67737_AQUAE.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Mon Apr 2 13:25:30 MDT 2001","Mon Jan 5 15:04:01 2004","Fri Mar 9 16:00:52 MST 2001","Thu Mar 1 09:54:52 MST 2001","Thu Mar 1 09:54:52 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 3 to 303 share 24% identity with PG0309, glycosyl transferase.","Mon Apr 2 13:22:51 MDT 2001","Thu Mar 1 09:54:52 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 5 to 170 (E-value = 5.2e-33) place PG0285 in the Glycos_transf_2 family which is described as Glycosyl transferase (PF00535)","Fri Mar 9 16:00:52 MST 2001","34540148","","","","","","1","","","PG0311" "PG0286","347138","346602","537","ATGGAAGATAGAAGCAATCTTTTTCGCCTCAGTGCTTTGATGGGTTTGATCTTTGGTGCATTCTGGTGTCTGAAGTACATCTGCGTGATGCTGGCATTCGGGATTCCTTTCTTGCTGCTGCTGTATATTCCGCTCACTTGTTTCGTCCCTTTTCTGGCTTATATCCTGACAAAGCGTTATCGGAACGTGCTACCGCAAGAAATGCGTTTCAGCTTTATGCATGGATGGCAGTTTTCTACTTTGCTCTATCTCTTCGCGGCTGTATTGGTTTCCATCCCTCACTACTATTTCTATGCCGAGATAATGCCGGCACACATGCCCGATATTATGGCACAGCTGGAGCAGTCCTCCGGGCTTATGACCCAACTCTTCGGTACCGATGAGTGGCGCGAGGTGATGGAGCAGATGCTCAAGGTGCGTCCCATGTCGCGTGTGATCAATGATATTTCATCCAACTTCTTCTGGGGAGCTTTGTTCTCCATTCCGGTAGGGCTGATCCTGAAAAGAAAGGCTGCGTCGGACAATATGCATTCGTTA","8.40","2.81","20850","MEDRSNLFRLSALMGLIFGAFWCLKYICVMLAFGIPFLLLLYIPLTCFVPFLAYILTKRYRNVLPQEMRFSFMHGWQFSTLLYLFAAVLVSIPHYYFYAEIMPAHMPDIMAQLEQSSGLMTQLFGTDEWREVMEQMLKVRPMSRVINDISSNFFWGALFSIPVGLILKRKAASDNMHSL","347138 346602","TIGR ID: PG0312","hypothetical protein","Inner membrane, Cytoplasm","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-40]?signal-peptide
tmhmm\"[10-29]?\"[35-57]?\"[78-98]?\"[149-167]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540149","","","","","","1","","","PG0312" "PG0287","347506","347811","306","GTGTCCAAAAACGTGGCGCGTAAACTTTTTCGTTTTGGCGTGGGAACGGAAAAATTTACGCACCGCAACGAAATTTTTTTGGTTCCGTTTTTCCCGAAAAGCGGTTTGAGTTTTTCCCGAAAAATGGTTCGTAATTTTGTTTCTTCTATTCTTCTCTCTTTCGGACGGTTTCGAGGACGAGAGGAAGATCTTTACTCCTTGCTTTGGATTCTATCGATCTCGATTATTGGATTTTCGTTCTTTTACATTGTATTCTATATCAATAAGAAATGCTATCTTTGCGGTCGATATTCCTATGTATGGTCA","11.00","11.12","12107","VSKNVARKLFRFGVGTEKFTHRNEIFLVPFFPKSGLSFSRKMVRNFVSSILLSFGRFRGREEDLYSLLWILSISIIGFSFFYIVFYINKKCYLCGRYSYVWS","347506 347811","TIGR ID: PG0313","conserved hypothetical protein","Cytoplasm","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
tmhmm\"[65-85]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Mar 1 09:47:31 MST 2001","","Thu Mar 1 09:47:31 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 3 to 69 share 44% identity with PG1728.1.","Thu Mar 1 09:47:31 MST 2001","Thu Mar 1 09:47:31 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Mar 1 09:47:31 MST 2001","34540150","","","","","","1","","","PG0313" "PG0288","347830","348189","360","GTGTGTCCACCATACGGGGCTAACAAGTTTAGTAGAAAGAAAGTAATGTACGTTATCGTAGACATTCAGGGACAGCAGATGAAGGTAGAACAAGGCCGTCGGCTGTTCGTGCATCACATCAAAGATGTAGAGAGTGGTGCAAGCGTAGAATTCGACAAGGTTCTCCTCGTCGATAATAATGGTGCTATCACCGTGGGTTCTCCTCTGGTAGAAGGCGCTAAGGTGGTATGTGAAGTATTGACTCCTCTTGTGAAAGGGGATAAGGTGCTGATCTTCCACAAGAAGAGAAGAAAAGGATACCGCAAGCTGAATGGCCATCGCCAGCAGTTTACGGAAATTCTGGTGAAAGAAGTCGTTGCA","10.50","9.85","13482","VCPPYGANKFSRKKVMYVIVDIQGQQMKVEQGRRLFVHHIKDVESGASVEFDKVLLVDNNGAITVGSPLVEGAKVVCEVLTPLVKGDKVLIFHKKRRKGYRKLNGHRQQFTEILVKEVVA","347830 348189","TIGR ID: PG0314","50S ribosomal protein L21","Cytoplasm","Residues 16 to 120 share 50% identity with gb|AAF93608.1| (AE004131), the ribosomal protein L21 in Vibrio cholerae.Residues 16 to 120 share 40% identity with dbj|BAB06730.1| (AP001517), the 50S ribosomal protein L21 in Bacillus halodurans.Residues 6 to 120 share 38% identity with gb|AAD47625.1| (AF153711), an unknown protein in Pseudomonas sp. BG33R.This region shares a similar degree of identity with a number of additional bacterial ribosomal L21 protiens.","
InterPro
IPR001787
Family
Ribosomal protein L21
PD003604\"[16-113]TQ7MX95_PORGI_Q7MX95;
PTHR21349\"[16-120]T50S RIBOSOMAL PROTEIN L21
PF00829\"[16-113]TRibosomal_L21p
TIGR00061\"[17-119]TL21: ribosomal protein L21


","BeTs to 12 clades of COG0261COG name: Ribosomal protein L21Functional Class: JThe phylogenetic pattern of COG0261 is -----qvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB001787 (Ribosomal protein L21) with a combined E-value of 1e-19. IPB001787A 17-40 IPB001787B 76-118","Residues 17-92 are 36% similar to a (PROTEIN RIBOSOMAL L21 50S) protein domain (PD003604) which is seen in RK21_PORPU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed May 23 15:27:36 MDT 2001","Thu Mar 1 09:45:28 MST 2001","Thu Apr 26 12:29:13 MDT 2001","Thu Mar 1 09:45:28 MST 2001","Thu Mar 1 09:45:28 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 09:45:28 MST 2001","-61% similar to PDB:2HGJ Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons. This entry 2HGJ contains 50S ribosomal subunit. The 30S ribosomal subunit can be found in PDB entry 2HGI. (E_value = 1.8E_14);-61% similar to PDB:2HGQ Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex. This entry 2HGQ contains 50S ribosomal subunit. The 30S ribosomal subunit can be found in PDB entry 2HGP. (E_value = 1.8E_14);-61% similar to PDB:2HGU 70S T.Th. ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A. This entry 2HGU contains 50S ribosomal subunit. The 30S ribosomal subunit can be found in PDB entry 2HGR. (E_value = 1.8E_14);-61% similar to PDB:2J01 STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME COMPLEXED WITH MRNA, TRNA AND PAROMOMYCIN (PART 2 OF 4). THIS FILE CONTAINS THE 50S SUBUNIT FROM MOLECULE I. (E_value = 1.8E_14);-61% similar to PDB:2J03 STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME COMPLEXED WITH MRNA, TRNA AND PAROMOMYCIN (PART 4 OF 4). THIS FILE CONTAINS THE 50S SUBUNIT FROM MOLECULE II. (E_value = 1.8E_14);","","","Residues 16 to 113 (E-value = 2.8e-41) place PG0288 in the Ribosomal_L21p family which is described as Ribosomal prokaryotic L21 protein (PF00829)","Thu Apr 26 12:29:13 MDT 2001","161579533","","","","","","1","","","PG0314" "PG0289","348220","348474","255","ATGGCACATAAAAAAGGTGTAGGTAGTTCCAAGAACGGTCGTGAATCGGAAAGCAAACGTCTTGGCGTGAAAGTTTATGGTGGAGAAATGGCTAAGGCCGGCAACATATTGGTTCGTCAGCGTGGCACCGTTCACCACCCGGGTGAAAACGTAGGTATCGGTAAGGATCATACTTTGTATGCACTGAAGTCGGGCGTGGTAGTATTTACTCGCAAGAAAAACGACCGTTCATACGTTTCGATCAAGACCGAATCA","11.10","10.94","9207","MAHKKGVGSSKNGRESESKRLGVKVYGGEMAKAGNILVRQRGTVHHPGENVGIGKDHTLYALKSGVVVFTRKKNDRSYVSIKTES","348220 348474","TIGR ID: PG0315","50S ribosomal protein L27","Cytoplasm, Extracellular","Numerous significant hits to ribosomal protein L27 in gapped BLAST; e.g. residues 2-81 are 57% similar to gb|AAA34115.1| ribosomal protein L27 of Nicotiana tabacum, residues 1-81 are 58% similar to gb|AAC05674.1| ribosomal protein L27 precursor of Oryza sativa, residues 1-81 are 67% similar to gb|AAK22305.1| ribosomal protein L27 of Caulobacter crescentus.","
InterPro
IPR001684
Family
Ribosomal protein L27
PD003114\"[1-72]TRibosomal_L27
PR00063\"[4-28]T\"[29-53]T\"[54-78]TRIBOSOMALL27
PTHR15893\"[8-81]TRibosomal_L27
PF01016\"[2-82]TRibosomal_L27
TIGR00062\"[1-82]TL27
PS00831\"[34-48]TRIBOSOMAL_L27
noIPR
unintegrated
unintegrated
SSF110324\"[20-85]TSSF110324


","BeTs to 13 clades of COG0211COG name: Ribosomal protein L27Functional Class: JThe phylogenetic pattern of COG0211 is ----yqvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB001684 (Ribosomal protein L27) with a combined E-value of 1.1e-50. IPB001684A 2-30 IPB001684B 31-81","Residues 2-81 are 62% similar to a (RIBOSOMAL PROTEIN L27 50S CHLOROPLAST PRECURSOR) protein domain (PD003114) which is seen in RL27_HELPY.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Mar 9 14:39:53 MST 2001","Tue Mar 27 10:41:32 MST 2001","Fri Mar 9 14:39:53 MST 2001","Fri Mar 9 14:39:53 MST 2001","Fri Mar 9 14:39:53 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Mar 9 14:39:53 MST 2001","-76% similar to PDB:1NKW Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans (E_value = 1.9E_24);-76% similar to PDB:1NWX COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH ABT-773 (E_value = 1.9E_24);-76% similar to PDB:1NWY COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN (E_value = 1.9E_24);-76% similar to PDB:1SM1 COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN (E_value = 1.9E_24);-76% similar to PDB:1XBP Inhibition of peptide bond formation by pleuromutilins: The structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with Tiamulin (E_value = 1.9E_24);","","","Residues 2 to 82 (E-value = 1.4e-48) place PG0289 in the Ribosomal_L27 family which is described as Ribosomal L27 protein (PF01016)","Fri Mar 9 14:39:53 MST 2001","34540152","","","Elhag,G.A. and Bourque,D.P. 1992. Nuclear-encoded chloroplast ribosomal protein L27 of Nicotiana tabacum: cDNA sequence and analysis of mRNA and genes. Biochemistry 31 (29): 6856-6864. PubMed: 1339289.","","Tue Mar 27 10:41:32 MST 2001","1","","","PG0315" "PG0290","348577","349845","1269","ATGCTGACACTCAAGCAAATCATAGAAAACAAGGAAGAAGTGATCCGTCGCTTGGCGGTGAAGCACTTCGATGCAGCTGCTATTCTCGACGAAGTCATCTCTCTCGACAGACAGCGACGCGAAACTCAACAGAGTCTGGATGCTCGCTTGGCGGAGCAAAACGCCATTGCCAAGGAGATCGGAGCTTTGATGAAAGCCGGCAAGAAAGACGAGGCAGAGGCCATCCGTGCGAAAGTAGCCGATATGAAAGCCGGGAGCCACCATCTGGAAGAGCGGAAAGCTGATCTGGAGAATGCTATACGCCAACAGCTTCTGCTTATCCCGAATCTGCCGCATGAGTCTGTCCCTGCAGGCAAGACCGCAGAGGAGAATGTCTGTGTGAAGACAGGCGGCACAGTGCCGGAGCTTGGAACGCACAAGCTCCCACATTGGGATCTGGCCAAGAAATACGATCTGATCGACTTCGAACTCGGCGTCAAGATAACCGGAGCAGGCTTCCCTGTCTATAAGGGCAAAGGAGCACGCCTGCAGCGAGCTTTGGTCAACTTCTTCTTGGATGAAGCCCGCAACGCCGGCTTCACGGAGATAGAGCCGCCCTATGTAGTCAATGAGGATTCCGGCTACGGTACGGGACAGCTCCCTGACAAGGAAGGGCAGATGTACCATGTCACGGCGGACAACCTGTATCTGATCCCCACGGCAGAGGTGCCGGTGACCAATATCTTCCGCGATGTCATTCTCTCCGAGGACGAATTGCCCATTCTCCTGACCGCTTACTCGGCTTGCTTCCGACGCGAAGCCGGTTCGTACGGCAAGGATGTTCGCGGTCTGAACCGCCTCCATCAGTTCAACAAGGTGGAGATCGTCTGCATCGACAAGCCCGAACACTCCTACGAACAGCTCGATCAGATGGTCGGCTATGTCCAAGGCCTTGTAGATAAGTTGGGACTTCCGTGGCGTATCCTTCGCCTCTGCGGCGGAGATATCAGCTTCACTTCGGCATTGACTTACGATTTCGAAGTCTATTCGGCTGCCCAAGAGCGGTGGTTGGAGGTTAGCTCGGTGTCCAATTTCGAGAGCTTCCAAGCCAATCGTCTGAAGTGCCGTTATCGCAATGCGGATAAGAAAGTGGAGCTTTGCCACACGCTCAACGGTAGTGCCTTGGCCTTGCCGCGTATCGTGGCTGCTCTGCTGGAAAACAATCAGACAGCCGATGGCATCCGCATCCCCGACTGTCTGGTGCCTTATACAGGCTTCTCGATGATCGAT","5.70","-7.88","47272","MLTLKQIIENKEEVIRRLAVKHFDAAAILDEVISLDRQRRETQQSLDARLAEQNAIAKEIGALMKAGKKDEAEAIRAKVADMKAGSHHLEERKADLENAIRQQLLLIPNLPHESVPAGKTAEENVCVKTGGTVPELGTHKLPHWDLAKKYDLIDFELGVKITGAGFPVYKGKGARLQRALVNFFLDEARNAGFTEIEPPYVVNEDSGYGTGQLPDKEGQMYHVTADNLYLIPTAEVPVTNIFRDVILSEDELPILLTAYSACFRREAGSYGKDVRGLNRLHQFNKVEIVCIDKPEHSYEQLDQMVGYVQGLVDKLGLPWRILRLCGGDISFTSALTYDFEVYSAAQERWLEVSSVSNFESFQANRLKCRYRNADKKVELCHTLNGSALALPRIVAALLENNQTADGIRIPDCLVPYTGFSMID","348577 349845","TIGR ID: PG0316","seryl-tRNA synthetase (serine--tRNA ligase)","Cytoplasm","Numerous significant hits to seryl-tRNA synthetase (serine--tRNA ligase) in gapped BLAST; e.g. residues 1-422 are 43% similar to gb|AAC06595.1| seryl-tRNA synthetase of Aquifex aeolicus, residues 1-418 are 44% similar to pir||S66043 serine--tRNA ligase of Bacillus subtilis, residues 1-418 are 46% similar to gb|AAF42032.1| seryl-tRNA synthetase of Neisseria meningitidis MC58.This sequence is similar to BT4312.","
InterPro
IPR002314
Domain
tRNA synthetase, class II (G, H, P and S)
PF00587\"[176-346]TtRNA-synt_2b
InterPro
IPR002317
Family
Seryl-tRNA synthetase, class IIa
PR00981\"[266-278]T\"[278-291]T\"[318-331]T\"[335-351]T\"[353-369]TTRNASYNTHSER
PTHR11778\"[103-422]TtRNA-synt_ser
PF02403\"[1-111]TSeryl_tRNA_N
TIGR00414\"[1-417]TserS
InterPro
IPR006195
Domain
Aminoacyl-transfer RNA synthetase, class II
PS50862\"[175-410]TAA_TRNA_LIGASE_II
InterPro
IPR010978
Domain
tRNA-binding arm
SSF46589\"[1-116]TtRNA_binding_arm
noIPR
unintegrated
unintegrated
G3DSA:1.10.287.40\"[1-108]TG3DSA:1.10.287.40
G3DSA:3.30.930.10\"[109-422]TG3DSA:3.30.930.10
SSF55681\"[118-419]TSSF55681


","BeTs to 17 clades of COG0172COG name: Seryl-tRNA synthetaseFunctional Class: JThe phylogenetic pattern of COG0172 is amtkYqvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** PR00981 (Seryl-tRNA SYNTHETASE signature) with a combined E-value of 3.5e-25. PR00981A 266-278 PR00981B 278-291 PR00981C 318-331 PR00981D 335-351 PR00981E 353-369","Residues 9-101 are 32% similar to a (PROTEIN COILED COIL REPEAT FILAMENT HEPTAD PATTERN) protein domain (PD000002) which is seen in SYS_AQUAE.Residues 5-109 are 27% similar to a (SYNTHETASE SERYL-TRNA AMINOACYL-TRNA) protein domain (PD003933) which is seen in SYS_HALMA.Residues 142-373 are 49% similar to a (SYNTHETASE AMINOACYL-TRNA LIGASE PROTEIN BIOSYNTHESIS) protein domain (PD000380) which is seen in SYS_AQUAE.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Mar 27 10:52:02 MST 2001","Mon Jan 5 12:26:45 2004","Tue Mar 13 14:53:41 MST 2001","Tue Mar 13 14:53:41 MST 2001","Tue Mar 13 14:53:41 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 13 14:53:41 MST 2001","-51% similar to PDB:1SER THE 2.9 ANGSTROMS CRYSTAL STRUCTURE OF T. THERMOPHILUS SERYL-TRNA SYNTHETASE COMPLEXED WITH TRNA SER (E_value = 7.9E_51);-51% similar to PDB:1SES CRYSTAL STRUCTURES AT 2.5 ANGSTROMS RESOLUTION OF SERYL-TRNA SYNTHETASE COMPLEXED WITH TWO DIFFERENT ANALOGUES OF SERYL-ADENYLATE (E_value = 7.9E_51);-51% similar to PDB:1SET CRYSTAL STRUCTURES AT 2.5 ANGSTROMS RESOLUTION OF SERYL-TRNA SYNTHETASE COMPLEXED WITH TWO DIFFERENT ANALOGUES OF SERYL-ADENYLATE (E_value = 7.9E_51);-51% similar to PDB:1SRY REFINED CRYSTAL STRUCTURE OF THE SERYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS AT 2.5 ANGSTROMS RESOLUTION (E_value = 7.9E_51);-51% similar to PDB:1WLE Crystal Structure of mammalian mitochondrial seryl-tRNA synthetase complexed with seryl-adenylate (E_value = 1.5E_41);","","","Residues 1 to 111 (E-value = 1.9e-24) place PG0290 in the Seryl_tRNA_N family which is described as Seryl-tRNA synthetase N-terminal domain (PF02403)Residues 165 to 319 (E-value = 2.3e-47) place PG0290 in the tRNA-synt_2b family which is described as tRNA synthetase class II core domain (G, H, P, S and T) (PF00587)","Mon Jan 5 12:26:45 2004","34540153","","","","","","1","","","PG0316" "PG0291","352521","349864","2658","ATGACAAAAGAAACAACCCAACACCGATCGGGAGAGCGCATAGCCCGATTTGCAGATATAGAAGTACTCAGCTATCGAGCCGACCTCTTCGGCACATTGACCCCTAAGCAGAGGATGCTTTGCTACCACCTATCGGAAGCAGCCCTGCGAGGACGGGATATTACAACCATACAGAACTGCCGCTACAACCTCTGGGTACGCAGTCTGATGGAGCGTATTTACACCCATCTTAGCAAGTCGGAACGAACCGACGACTTTGCCCTGCTGGAAGAATACCTCTTCTGCATCTGGTTTGCCAATGGCATTCACCACCATTACAGCGGAGCCAAATTCATTGCCCGTTTCAGTCCGGGTTTCTTGCGGGCAGCCCTGAGAGAGGCGGGCGTGGAGCTGGAGCCGGAAGAGCAGGTGCTTTTGGAGCGCGTATTGTACGATACCGATTTTCTACCCAAACAGACCGAGCAGAGCGGCGAAGAGGATATTATCAAGGCTTCTTCGGTCAATTTCTATGCACCGGGTATCACCCGAGCCGAAGCGGAAAGCCATTACAAAAACCTGATAGAAGCTCTTCCCGAAAACGAGAAAAGCTGTCCGCCGAGCTTCGGACTGAATACCCGTCTGATCCGTTCGACTTCGGGCGAATTGAAAGACGAGGTTTGCTGTATAGACGGATTGTACGGCCCGGCCATAGAAGCTGTAGTCGCTTCCTTGGAGGCTGCCATACCATACACTGAGAACGAGGAACAGGCCGCATGCATACGACTGCTGTGCGACTATTACCGCACAGGAGACATCAGGCTGTACGACCGGTTCTGTATTCGCTGGGTGGAAAACAATCGTACTCGGATCGATTTTATCAACGGATTCACCGAAGTATATGCCGATCCGATAGGCATACACGGCAGTTGGGAGGGACTGGTACACATGCAGGACGAAGAAGCCGGCAGACGTACGCGCATCATCAGCGAACATGCCGGTTGGTTCGAAGCACATTCGCCGATCGACGCACGTTTCCGCAAGAAGAATCCCCATGGTATATCGGCTACGGTGGTCAATGTACTGACCATAGCCGGCGACAGCTATCCTGCCACACCGATAGGAATCAACCTCCCGAATGCCGACTGGATTCGTGCCGAACACGGATCCAAGTCCGTCACTATCGACAATATCACGGATGCATACAACCATGCCGCGCGAGGGACAGGTCTGTACGAGGAGTTTATCCCCGACGAGGAAGTACGCAGACACGTAGAGCTGCATGCCGACCTAACGGACAGCCTCCACACCGACCTGCACGAATGCCTCGGACATGGCAGCGGACAGTTGCTCCCCGGTGTACCAGGCGATGCACTTGGAGAACACGCCTCCACGCTGGAGGAGACGCGTGCCGACCTCTTCGCCCTCTATTTTCTGGCCGATCCCAAAATGATCGAATTAGGTCTTTTGACCGATCCCGATGCTTACAAAGCCAACTATTACAAATACATGCTCAACGGTCTGATGACCCAACTCGTGCGTATCAAGCGAGGAGAGGAGATAGAGGAGGCGCATATGCGCAACCGTGCACTCATAGCTCGCTACGTCTTGGAGCATGCCGAGCGGCCGGGGGCAATGTCGCTGGTCTGCGAAGAGGGCAAGACGGCACTCGTGATCAAGGACTATGAAGCAGTGCGTGCGATCATTGCCGGTTTGCTGACCGAGGTGCAACGCATCAAGAGCGAGGGCGACTATACCGCCGGCAAAGCGTTGGTAGAGCGTTATGCCGTCCACGTGGATCCGCTCTTGCACGAGGAAGTGCTGACGCGCTATGCCAAGCTGGATATTGCTCCGTATAAGGGATTTGTCAATCCTCGGTTGAGACCCGTATATAATTCGGAGGGCAGGCTTACGGATGCAACGATAGAATACACGGAAGGCTATGCCGAACAAATGCTTCGCTACAGTGCAGAATATAGCTTCCTGCCTACAGACAGTCCGCTTTTGCAGGAGGCACGAAGATTGCGCTCGCACCTCCGACGGGCGATGGACGGTGTACTATCGGCCAGTATGCGTGAGAAAGGACTCCACTACGGCATCAACTTTGGAGTCACTCGCGAACATCTGCTCCGACTGGCTCGCACGGCCGACGCTTCCGCTCCACTGGCCGACTATCTGTGGAGACGCGATGTAAGGGAGACGAAGATACTCGCCACGATGATTTTTCCGGCCGAAGAACTGACTCATGAGCAGGCAACGAGATTGCTCCGAGAGGCCGACAACGTGGAACTTCGCGAGCAACTGACAGCCAATCTGCTGGAGCGAATGCCCGAAGCGATCCGGAGCATCGGCCGATGGATCGAGAGCAAAGAGACTACTCCTGACATGATGACGGGAGTATTGACGCTTGCAGCCAGATTGTTTACACGCGGCATCTTTCCGGAAGACGTGCCGGCAGAGAAACTCTTAACACTGGCCATTCTCCATCTCTCCGATGAGGAGCAGAAAGCGGAGCTTCGGCGCGCTTCCGCACTTCTGCTCAAGCGGTACGGGCGAGGCTCCGCAGAACGGACAAAAAAAGTGCTGTGCCTATTGCCCGAATCGAGCCAAGACACAGCACCGGTTTTGTATGAATTATGTGAAGATATCCGCTTCGAACTCGACTTCTACCCAAAGGACGAG","5.50","-26.49","100661","MTKETTQHRSGERIARFADIEVLSYRADLFGTLTPKQRMLCYHLSEAALRGRDITTIQNCRYNLWVRSLMERIYTHLSKSERTDDFALLEEYLFCIWFANGIHHHYSGAKFIARFSPGFLRAALREAGVELEPEEQVLLERVLYDTDFLPKQTEQSGEEDIIKASSVNFYAPGITRAEAESHYKNLIEALPENEKSCPPSFGLNTRLIRSTSGELKDEVCCIDGLYGPAIEAVVASLEAAIPYTENEEQAACIRLLCDYYRTGDIRLYDRFCIRWVENNRTRIDFINGFTEVYADPIGIHGSWEGLVHMQDEEAGRRTRIISEHAGWFEAHSPIDARFRKKNPHGISATVVNVLTIAGDSYPATPIGINLPNADWIRAEHGSKSVTIDNITDAYNHAARGTGLYEEFIPDEEVRRHVELHADLTDSLHTDLHECLGHGSGQLLPGVPGDALGEHASTLEETRADLFALYFLADPKMIELGLLTDPDAYKANYYKYMLNGLMTQLVRIKRGEEIEEAHMRNRALIARYVLEHAERPGAMSLVCEEGKTALVIKDYEAVRAIIAGLLTEVQRIKSEGDYTAGKALVERYAVHVDPLLHEEVLTRYAKLDIAPYKGFVNPRLRPVYNSEGRLTDATIEYTEGYAEQMLRYSAEYSFLPTDSPLLQEARRLRSHLRRAMDGVLSASMREKGLHYGINFGVTREHLLRLARTADASAPLADYLWRRDVRETKILATMIFPAEELTHEQATRLLREADNVELREQLTANLLERMPEAIRSIGRWIESKETTPDMMTGVLTLAARLFTRGIFPEDVPAEKLLTLAILHLSDEEQKAELRRASALLLKRYGRGSAERTKKVLCLLPESSQDTAPVLYELCEDIRFELDFYPKDE","352773 349864","In the absence of published sequences associated with the Banbula et al. paper, it is not clear what DPP this might represent.TIGR ID: PG0317","probable dipeptidyl peptidase","Cytoplasm","Several moderately significant hits in gapped BLAST to dipeptidyl peptidase III. Residues 28 to 663 share 25% identity with dbjBAA24608.2 (D89340), a dipeptidyl peptidase III (DPP III) in Rattus norvegicus. Residues 28 to 663 share 24% identity with refNP_005691.1, a dipeptidylpeptidase III in Homo sapiens. Residues 30 to 588 share 23% identity with gbAAF54231.1 (AE003678), the CG7415 probable DPP III in Drosophila melanogaster.This sequence is similar to BT1846.","
noIPR
unintegrated
unintegrated
PTHR23422\"[16-588]TPTHR23422
PTHR23422:SF4\"[16-588]TPTHR23422:SF4
SSF48371\"[662-856]TSSF48371


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 224-592 are 27% similar to a (III F02E9.6 PROTEIN DIPEPTIDYL AMINOPEPTIDASE) protein domain (PD014459) which is seen in O55096_RAT.","","Thu Jun 14 10:41:09 MDT 2001","","Thu Jun 14 10:41:09 MDT 2001","Thu Jun 14 10:41:09 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 10:41:09 MDT 2001","Thu Jun 14 10:41:09 MDT 2001","","Tue Jun 19 15:13:16 MDT 2001","Sun Jun 3 13:33:45 MDT 2001","Fri Jul 25 14:40:37 2008","Thu Mar 1 09:38:18 MST 2001","","Tue Jun 19 15:13:16 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Jul 25 14:40:37 2008","No significant hits to the PDB database (E-value < E-10).","","","Residues 118 to 645 (E-value = 1.1e-09) place PG0291 in the Peptidase_M49 family which is described as Peptidase family M49 (PF03571)","Tue Jun 19 15:13:16 MDT 2001","34540154","","Banbula A, Yen J, Oleksy A, Mak P, Bugno M, Travis J, Potempa J.Porphyromonas gingivalis DPP-7 represents a novel type of dipeptidylpeptidase. J Biol Chem. 2001 Mar 2;276(9):6299-305.PMID: 11096098 Infect Immun. 2000 Mar;68(3):1176-82.PMID: 10678923 ","","Sun Jun 3 15:11:26 MDT 2001","","1","","","PG0317" "PG0292","353280","352786","495","GTGAGTCACACTGCCATCTGCTTCTTTGATCGTACCGAAGTCATGCTCCACATTGTCCGAAGAGATGACTGCTTTCTTTGCGTTTTGCGCCGTAGCTACTCCTATTCCGATAAGGAGTGCGATCATTACAAAAACGATTCGTTTCATAGTTCTATTCTTTTTGAAATAAGATTTTACACGCTGAAAATTCAAACCGGCATACTCGGCATTTTGCCCGAATTTTCGTATGCCTATCGCAACAAAGGTACATTTTTCTTTTATTGTAAAGGTCTATTTAGCATTTTTATGCAGGCACAGCAGCAGCCATTCGACCCATCGTTTACCGCTCCGGATCGGCGTCCAGGCAGAATACCGACATTCCGAAGAGCTGAGAGAGAACGGGGAGAAAATCGAGTTTACGCTCGAGAATTGTTCCACCCAACGCCCCTAAAAACGTGGCGCGAGATTTTTTTCGTTTTGGTGCGGGAAGGAAAAAATTTACGCGCGAGAACGAAA","10.40","10.96","19804","VSHTAICFFDRTEVMLHIVRRDDCFLCVLRRSYSYSDKECDHYKNDSFHSSILFEIRFYTLKIQTGILGILPEFSYAYRNKGTFFFYCKGLFSIFMQAQQQPFDPSFTAPDRRPGRIPTFRRAERERGENRVYARELFHPTPLKTWREIFFVLVREGKNLRARTK","353280 352786 [Bad Olap 385 192 0]","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No hit found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG0293","353089","353514","426","TTGAATTTTCAGCGTGTAAAATCTTATTTCAAAAAGAATAGAACTATGAAACGAATCGTTTTTGTAATGATCGCACTCCTTATCGGAATAGGAGTAGCTACGGCGCAAAACGCAAAGAAAGCAGTCATCTCTTCGGACAATGTGGAGCATGACTTCGGTACGATCAAAGAAGCAGATGGCAGTGTGACTCACACTTTCGTTATCAAGAATACGGGAGACGCTCCCTTGGTGATCACTCGCGTAGTGGCATCTTGCGGCTGCACGACACCCCAGTTTAGCAAAGAGCCCATCGCTCCGGGTCAGACAAGCAAAATAGACGTCACATATAATCCTGCCGGCCGTCCGGGTCAGTTCGTAAAGACCATAGCCGTGTACAGCAATGGTAAGGATGGTACCTTTACGCTACGCATCAAAGGGGTTGTAGAA","10.60","9.37","15333","LNFQRVKSYFKKNRTMKRIVFVMIALLIGIGVATAQNAKKAVISSDNVEHDFGTIKEADGSVTHTFVIKNTGDAPLVITRVVASCGCTTPQFSKEPIAPGQTSKIDVTYNPAGRPGQFVKTIAVYSNGKDGTFTLRIKGVVE","353089 353514 [Shorter 384 192 99]","TIGR ID: PG0319","conserved hypothetical protein","Periplasm, Cytoplasm","Its nearest neighbor in the NR database is gi:29346495 from Bacteroides thetaiotaomicron VPI-5482.","
InterPro
IPR011467
Family
Protein of unknown function DUF1573
PF07610\"[64-109]TDUF1573
noIPR
unintegrated
unintegrated
signalp\"[1-35]?signal-peptide
tmhmm\"[20-38]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Mar 1 09:31:31 MST 2001","Tue Mar 1 15:41:57 2005","Thu Mar 1 09:31:31 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 20 to 141 share 44% identity with PG0294.","Thu Mar 1 09:31:31 MST 2001","Thu Mar 1 09:31:31 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Mar 1 09:31:31 MST 2001","34540155","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Tue Mar 1 15:43:05 2005","","1","","","PG0319" "PG0294","353549","354634","1086","ATGATCGTCAGTACATTTCGAGGGCTGCTCTTCTTCCTTTTCCTATTGACTCCTCTGTTGCTGACAGCTCAGGAGAGTCCGGAAATACAGGTCGAGGAGCAGTCCTTTAACTTTGGCCTGATTCCGGAAGAAAAAGGATCGGTAGGGCATAGCTTCAAGTTTCGCAACAGCGGTACCGCTCCTTTGCTCATCACTCGTGTGATGGCCGATTGTGGCTGTACCACTCCGACGTGGCCGGAGGAAGCCATCGCTCCCGGAGAGGAAGCGGAGATCCGCGTCCTCTTCGATCCTGTCGGTCGATCAGGAGCTTTCGTCAAGCGGATTCGGGTTTTCTCCAACGCGCAATCTTCACCGCTGGAACTCAGTATAAGCGGCACGGTTACGACCCTCAGTGGTGCCATACCGCATGCCTATGTCTTGGCGATAGGGCCGCTACAGGTGAGCAATGCTCGCCTGCTTTTCCCTATTTCCATGCCTGAAGATGAGGGGGTGGTACGGTTGGTGGTGAACAATACGGATGAGTCCGACCTGCAAGTTGCTGTCGTATCGCTACCTTCATTTGTATCGCTGGACGATCGGGCATTCCGGCTGCAAGCTCGTGAGCCCAGAGAGCTGAATCTTTCGCTTGCCGTACCTCGCAATATGCCTCCGGGGATGAAGGACGAGCCTCTCGTTTTGGAGGTAACCTCTCCCGAAACAGGAAAAAAAGCCGTTGATTCCGTCATGGTCTCCTTGCCGCTGGTGGACAATTTCCCTGCCCTCACTGCAGCCCAAACAGGCGTTATGGAACTCAGCACCTATTTGGACATGGGACAGTTGGATGGAGAGACGACAAAGGCTGCGATAGAGATTCGCAACGTCGGTGCCGGCCCTCTCCGATTGCATAGCGTCACCACACGCAATCCGGCTTTGACTGCCGTACCCGACCGGACGGAGATAAAGCCCGGCGGAAGCACACTATTGCGGATCGCTGTGGATCCGCAGGTGATGAAGGCTGAGGGGTGGCAGAGTATAGCTGCCGATATTTCCATTATTTGCAACGATCCGCAGGCTCCGCTACGTCGTATCAAGGTCAAAGCCGAACTG","4.80","-9.39","39093","MIVSTFRGLLFFLFLLTPLLLTAQESPEIQVEEQSFNFGLIPEEKGSVGHSFKFRNSGTAPLLITRVMADCGCTTPTWPEEAIAPGEEAEIRVLFDPVGRSGAFVKRIRVFSNAQSSPLELSISGTVTTLSGAIPHAYVLAIGPLQVSNARLLFPISMPEDEGVVRLVVNNTDESDLQVAVVSLPSFVSLDDRAFRLQAREPRELNLSLAVPRNMPPGMKDEPLVLEVTSPETGKKAVDSVMVSLPLVDNFPALTAAQTGVMELSTYLDMGQLDGETTKAAIEIRNVGAGPLRLHSVTTRNPALTAVPDRTEIKPGGSTLLRIAVDPQVMKAEGWQSIAADISIICNDPQAPLRRIKVKAEL","353549 354634","TIGR ID: PG0320","conserved hypothetical protein","Cytoplasm, Periplasm","Its nearest neighbor in the NR database is gi:53712081 from Bacteroides fragilis YCH46.","
InterPro
IPR011467
Family
Protein of unknown function DUF1573
PF07610\"[50-95]TDUF1573


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Sep 10 15:07:01 2004","Tue Mar 1 15:50:27 2005","Thu Mar 1 09:29:39 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 13 to 127 share 4% identity with PG0293.","Thu Mar 1 09:29:39 MST 2001","Thu Mar 1 09:29:39 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Mar 1 09:29:39 MST 2001","34540156","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Tue Mar 1 15:50:27 2005","","1","","5","PG0320" "PG0295","354788","355816","1029","ATGCCCATCATCAATCCCTACCTGAATAGGACAAGACGCAAGAAGCTGACGGTCAAGGACTATGTGGACGGCATTTTGGCCGGTGATATAACCATCCTGAGCCGTGCCGTCACGCTCGTGGAAAGTCTCCTGCCCATGCATCAGGATACGGCACAGCAGATCATAGAGCAGTGCCTGCCTCATGCCGGCCGCTCCATGCGTATCGGCATTACCGGAGTACCCGGAGCGGGCAAGAGTACTTCGATCGATGCTTTCGGTATGCATCTCATCAAGCAGGGGCGGAAGCTTGCCGTGCTGGCCATAGACCCCAGCAGCGAGAGATCCAAAGGGAGTATTCTGGGCGATAAGACCCGTATGGAGCAGCTCTCTCGAGAGAAGAATGCCTTTATTCGTCCCAGTCCTGCTGCCGGTTCGCTGGGTGGCGTGGCACGCAAGACGCGTGAGACCATCGTGCTGTGTGAAGCGGCCGGATTCGACACGATCTTTGTAGAGACGGTAGGAGTGGGACAGAGCGAAACTGCTGTTCATTCGATGGTGGACTTCTTCCTGCTGATCCAACTGGCCGGTACGGGGGATGAACTTCAGGGTATCAAGCGCGGGATTATGGAGATGGCCGATGGTATCATCGTCAATAAAGCGGACGGAGACAATATCGACAAGGCCAATCTGGCGGCTTCGCATTATCGGAATGCTCTTCGGCTATTCCCACAGGCCGAATCGGGATGGAAGCCGCGAGTCCTCACCTATTCAGGCTATTATGCCATCGGCATCAAGGATATTTGGGATATGATCGACGAGTACCGCCATTTTACGACGGACAACGGATTCTTCCGACTGAAACGTCAGCGTCAGGCCAAATGGTGGATGTACGAGACGATCAACGACGAACTGCGCGATTCGTTCTACAACAGTACAGAGGTTCAGAGCCTCATACCGGAGGTCGAAGAGACCGTGTTGGAAGATCGTGCCACGAGTTTCGTCGCTGCCCGTCGTCTGCTGGATGCCTACTTCCGCTATATTTCCAACAAA","8.60","3.37","38358","MPIINPYLNRTRRKKLTVKDYVDGILAGDITILSRAVTLVESLLPMHQDTAQQIIEQCLPHAGRSMRIGITGVPGAGKSTSIDAFGMHLIKQGRKLAVLAIDPSSERSKGSILGDKTRMEQLSREKNAFIRPSPAAGSLGGVARKTRETIVLCEAAGFDTIFVETVGVGQSETAVHSMVDFFLLIQLAGTGDELQGIKRGIMEMADGIIVNKADGDNIDKANLAASHYRNALRLFPQAESGWKPRVLTYSGYYAIGIKDIWDMIDEYRHFTTDNGFFRLKRQRQAKWWMYETINDELRDSFYNSTEVQSLIPEVEETVLEDRATSFVAARRLLDAYFRYISNK","354713 355816","TIGR ID: PG0321","conserved hypothetical protein","Cytoplasm","Numerous signifcant hits in gapped BLAST to hypothetical proteins and possible kinases; Residues 12-336 are 51% similar to dbj|BAB06673.1| (AP001517) BH2954, an unknown conserved protein in Bacillus halodurans. Residues 25-336 are 52% similar to AE005917, a possible LAO transporter binding protein kinase in Caulobacter vibrioides. Residues 20-334 are 49% similar to emb|CAB02046.1| (Z79701), a LAO/AO transport system kinase in Mycobacterium tuberculosis.This sequence is similar to BT4049.","
InterPro
IPR005129
Family
ArgK protein
PF03308\"[33-306]TArgK
TIGR00750\"[28-334]Tlao
noIPR
unintegrated
unintegrated
PTHR23408\"[42-342]TPTHR23408
SSF52540\"[65-306]TSSF52540


","BeTs to 4 clades of COG1703COG name: ArgK, kinase of periplasmic Arg,Orn-binding proteinsFunctional Class: EThe phylogenetic pattern of COG1703 is a--k----e-r----------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 37-295 are 54% similar to a (ATP-BINDING PROTEIN TRANSPORT CHROMOSOME) protein domain (PD011981) which is seen in YE96_MYCTU.","","Thu Jun 14 10:41:21 MDT 2001","","Thu Jun 14 10:41:21 MDT 2001","Thu Jun 14 10:41:21 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 10:41:21 MDT 2001","Thu Jun 14 10:41:21 MDT 2001","","","Thu Mar 1 09:27:38 MST 2001","Mon Jan 5 10:47:37 2004","Thu Jun 14 10:41:21 MDT 2001","","Tue Jun 19 15:50:05 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 09:27:38 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 33 to 306 (E-value = 1.7e-138) place PG0295 in the ArgK family which is described as ArgK protein (PF03308)","Tue Jun 19 15:50:05 MDT 2001","34540157","","","","","","1","","5","PG0321" "PG0296","355848","357023","1176","ATGCGTAAACTACGGATCGGCCTCTTGCCCAAGATCATATTGGCCATTGTCCTCGGTATCGGCTTCGGCAACCTCTTCAGCTTCCCGTTTATTCGGATCTTCGTCACGTTCAATGCTCTCTTCAGCGAACTGCTCGGCTTCTCCATTCCGCTGATTATCCTCGGATTGGTGACGGTGGCTATTGCCGACATCGGGAAAGGTGCCGGCAGGATGCTTCTTATCACCGTGCTGATAGCCTATATGGCTACGGTGTTGTCAGGCCTATTCGCCTACTTCGCCGGCAATGCTTTCTTCCCGTCTTTGATTTCTCCCGGTACGGGTATGAGCGATGTCACTCAGTCGCAAGGAGTACAGCCTTACTTCTCTATCGCCATACCGCCGATGATGAGCGTGATGACAGCTCTTGTCCTCTCTTTCGTACTCGGCCTGGGTTTGGCCGGCATGGAAAGCCGTGGCATGAAGGGAATGATGCAGGATTTTCAGGAGATTATCACCAAGTTGATCGCCAAGGTTATTATCCCATTGCTGCCCATCTATATCTTCGGGATCTTTCTGAATATGACCCATCAGGGCGAAGTGGTGAAGGTGTTGTCCGTCTTCCTTAGTATCATCGGTATCATTTTCGGCCTTCATATCATCCTGCTGATCTTCCAATACTCTGTGGCAGGATTCATAGCCAAGAAGAATCCTTTCAGAATGCTGTGGCGAATGCTGCCGGCTTATTTCACCGCTCTCGGTACGCAGTCTTCGGCAGCCACTATTCCCGTCACGCTCAAGAGTGCGGTGAAGTGCGGTGTATCGGAAGAGATAGCAGGCTTTACGATCCCTCTCTGTGCTACGATTCACTTGAGCGGTAGCACGCTCAAGATCACTTGTTGTGCTTTGGCACTGATGATCATGCAGGGGATGCCTTATGATGCAGGTCTGTTTACCGGATTTATCTTTATGCTCGGTATTACGATGGTGGCAGCTCCGGGAGTGCCGGGTGGAGCCATCATGGCGGCTTTAGGTGTTTTGCAGAGTATGCTCGGTTTCGATGAGTCCTTACAGGCACTCATGATAGCATTGTATATAACCATGGACAACTTCGGTACGGCTTGTAATGTCACAGGCGACGGTGCTATCTCGCTGATCGTGGACAAACTCATGATGCGCAAGAGGCAGGCAGTCGCAAGG","10.10","9.47","41922","MRKLRIGLLPKIILAIVLGIGFGNLFSFPFIRIFVTFNALFSELLGFSIPLIILGLVTVAIADIGKGAGRMLLITVLIAYMATVLSGLFAYFAGNAFFPSLISPGTGMSDVTQSQGVQPYFSIAIPPMMSVMTALVLSFVLGLGLAGMESRGMKGMMQDFQEIITKLIAKVIIPLLPIYIFGIFLNMTHQGEVVKVLSVFLSIIGIIFGLHIILLIFQYSVAGFIAKKNPFRMLWRMLPAYFTALGTQSSAATIPVTLKSAVKCGVSEEIAGFTIPLCATIHLSGSTLKITCCALALMIMQGMPYDAGLFTGFIFMLGITMVAAPGVPGGAIMAALGVLQSMLGFDESLQALMIALYITMDNFGTACNVTGDGAISLIVDKLMMRKRQAVAR","355752 357023","TIGR ID: PG0322","possible proton/sodium:glutamate symporter protein","Inner membrane, Cytoplasm","One strong and some weak hits with gapped BLAST to symporter proteins; e.g. residues 8-379 are 35% similar to probable glutamate/aspartate transporter (AE001231) of Treponema pallidum, residues 7-372 are 24% similar to sodium:dicarboxylate symporter protein, HI1545, (U32830) of Haemophilus influenzae, residues 5-387 are 24% similar to sodium/dicarboxylate symporter protein (AE002561) of Neisseria meningitidis, residues 11-379 are 23% similar to probable glutamate symport (AE001313) of Chlamydia trachomatis.This sequence is similar to BT1223.","
InterPro
IPR001991
Family
Sodium:dicarboxylate symporter
PR00173\"[3-23]T\"[126-148]T\"[203-222]T\"[273-299]TEDTRNSPORT
PF00375\"[8-382]TSDF
noIPR
unintegrated
unintegrated
PTHR11958\"[129-386]TPTHR11958
PTHR11958:SF6\"[129-386]TPTHR11958:SF6


","BeTs to 7 clades of COG1301COG name: Dicarboxylate permease, Na+ or H+ symporterFunctional Class: CThe phylogenetic pattern of COG1301 is ---k-q--EBrh----oLINxNumber of proteins in this genome belonging to this COG is 1","***** IPB001991 (Sodium:dicarboxylate symporter family) with a combined E-value of 3.3e-18. IPB001991A 12-27 IPB001991B 59-100 IPB001991F 199-253 IPB001991G 265-318 IPB001991H 337-381","Residues 121-379 are 37% similar to a (TRANSPORTER SYMPORT TRANSMEMBRANE TRANSPORT AMINO ACID) protein domain (PD000719) which is seen in O83566_TREPA.","","Thu Jun 14 10:41:49 MDT 2001","","Thu Jun 14 10:41:49 MDT 2001","Thu Jun 14 10:41:49 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 10:41:49 MDT 2001","Thu Jun 14 10:41:49 MDT 2001","","","Wed May 23 17:09:58 MDT 2001","Thu Dec 4 11:56:57 2003","Wed May 23 17:09:58 MDT 2001","Tue Jun 19 16:01:53 MDT 2001","Tue Jun 19 16:01:53 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Wed Apr 19 09:55:59 MDT 2000","Wed May 23 17:09:58 MDT 2001","-41% similar to PDB:1XFH Structure of glutamate transporter homolog from Pyrococcus horikoshii (E_value = 9.7E_16);-41% similar to PDB:2NWW Crystal structure of GltPh in complex with TBOA (E_value = 9.7E_16);-41% similar to PDB:2NWX Crystal structure of GltPh in complex with L-aspartate and sodium ions (E_value = 9.7E_16);-40% similar to PDB:2NWL Crystal structure of GltPh in complex with L-Asp (E_value = 2.2E_15);","","","Residues 8 to 382 (E-value = 7.8e-09) place PG0296 in the SDF family which is described as Sodium:dicarboxylate symporter family (PF00375)","Tue Jun 19 16:01:53 MDT 2001","34540158","","","Characterization of the proton/glutamate symport protein of Bacillus subtilis and its functional expression in Escherichia coli. Tolner B, Ubbink-Kok T, Poolman B, Konings WN. J Bacteriol 1995 May;177(10):2863-9. PubMed: 7751298. ","","Wed Apr 19 10:15:03 MDT 2000","1","","5","PG0322" "PG0297","357478","357152","327","ATGACAAAAGAAACATACCCCAAAGCTACTGTCCTCGACATATCGGCATCAGTAGAGTATTCCGACGGCGGAATCATCAGCAAACAAGTACTTAAGAACGAAGTAGGCAACATTACTCTCTTCTCCTTCGACCAAGGGCAGGGATTGAGCGAACACACAGCACCTTTCGATGCCTTCGTACAGATATTGGAAGGGGAAGCGGAAATAAGAATCGGAGGCCAACCTCTTCTCCTCAAAGCCGGCCGGTCCGTCATCATGCCGGCCAACGTCAGCCATGCACTCCATGCTACGAAACGCTTCAAGATGCTCCTCACCATGATCCGCGGC","7.80","0.71","11829","MTKETYPKATVLDISASVEYSDGGIISKQVLKNEVGNITLFSFDQGQGLSEHTAPFDAFVQILEGEAEIRIGGQPLLLKAGRSVIMPANVSHALHATKRFKMLLTMIRG","357532 357152 [Shadowed by 391]","TIGR ID: PG0323","conserved hypothetical protein","Cytoplasm","One moderate hit and some weak hits to hypothetical protein using gapped BLAST. Residues 11-108 are 54% similar to gb|AAB85927.1| (AE000906), an unknown protein in Methanothermobacter thermautotrophicus. Residues 9-108 are 37% similar to conserved hypothetical protein of Streptococcus pyogenes. Residues 11-108 are 36% similar to unknown of Streptococcus agalactiae.","
InterPro
IPR011051
Domain
Cupin, RmlC-type
SSF51182\"[6-109]TRmlC_like_cupin
InterPro
IPR013096
Domain
Cupin 2, conserved barrel
PF07883\"[39-106]TCupin_2
InterPro
IPR014710
Domain
RmlC-like jelly roll fold
G3DSA:2.60.120.10\"[25-107]TRmlC-like_jellyroll


","BeTs to 4 clades of COG1917COG name: Uncharacterized ACR, double-stranded beta-helix domainFunctional Class: SThe phylogenetic pattern of COG1917 is --tk-qvc--r-uj-------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 11-108 are 54% similar to a (HYPOTHETICAL 11.0 KD PROTEIN) protein domain (PD067066) which is seen in O27501_METTH.","","Thu Jun 14 10:42:01 MDT 2001","","Thu Jun 14 10:42:01 MDT 2001","Thu Jun 14 10:42:01 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 10:42:01 MDT 2001","Thu Jun 14 10:42:01 MDT 2001","","","Thu Mar 1 09:23:14 MST 2001","Tue Jun 19 16:06:37 MDT 2001","Thu Jun 14 10:42:01 MDT 2001","","Tue Jun 19 16:06:37 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 09:23:14 MST 2001","-64% similar to PDB:1YHF X-ray crystal structure of conserved hypothetical SPy1581 protein from Streptococcus pyogenes. (E_value = 1.6E_15);","","","No significant hits to the Pfam 11.0 database","Tue Jun 19 16:06:37 MDT 2001","34540159","","","","","","1","","5","PG0323" "PG0299","359172","357682","1491","ATGGCACGTACCTCTTTTCAAGTTGGTTCCGAACCGCTCTCTCTGGATCTGCTTCGCGAATATCTGGATAGTCGCTTCAAGCTGGAACTCTCAGCCGATGCCGTAAGACGTATCGAGCACTGCCGCCACTATCTGGACGAGAAAGTGAAGCAGTCGGACAAACCCATATACGGCGTGACCACCGGCTTCGGCTCTCTCTGCAACAGGACAATTACACCGGATCAGCTTACCGCCTTACAGGAGAACCTCGTCAAGAGTCATGCCTGTAGCTGCGGCACGCCCGTTCATGAGGACATCGTGCGCCTGATGCTTCTGCTCAAAGCTCATGCCCTCCAGTTGGGACACAGTGGCGTACAGCTATGCACCGTGCAGCGTATCCTGGACATGCTCAATAACGACGTACTCCCCATCGTTTACGATCGCGGTTCGCTCGGCGCATCGGGCGACCTCGCCCCTCTGGCCAATCTCTTCCTGCCGCTTATAGGTGAGGGAGAAGTCATGTACAAGGGAGAGAAGCGCAATGCCTGCGATGTGATGCAGGAGTTCGGCTGGAAGAAGATCATCCTCAAGAGCAAAGAAGGCTTGGCTCTGCTCAATGGTACGCAGTTCATGAGCAGTCATGGCGTCTACGCCCTCCTCAAGGCACACCGTCTTGTAGAGGTAGCAGACTGTATCGGTGCACTCTCGCTCGAAGCTTTCGATGGCTTGGATGCCCCCTTTACCGACAACCTCCACATCATACGTCCTCACCCCGGACAGTTGGCCGTAGCTCGTCACCTGAAGGAAGTTCTTAAAGGTAGCGAGCAGATAGCCCGCCCGAAGAAGCAGGTACAGGATCCGTACAGCTTCCGCTGTATGCCGCAGGTTCACGGAGCCAGCCGCGATGCCATTGCCTACGTTACAGAGGTAGTCATTCGAGAGATCAACTCCGTGACCGACAATCCCACGGTCTTCCCCGATGAAGATCTTGTCGTATCGGGTGGTAACTTCCACGGCCAACCTCTTGCCATCGTATATGATTTTCTGGCTATAGCCTTGGCTGAACTGGGCAATATCAGCGAACGTCGCACGGCTCAGCTCATACTCGGTCTGCGCAATCTGCCTGAGTTCCTCGTAGCCAATCCCGGTCTGAACAGCGGATTCATGATACCGCAGTATGCAGCCGCAGCTATGGTGAGCAAGAACAAGATGTACTGTTTCTCCGCAGCCAGCGATAGTATCGTCAGCAGCAACGGGCAGGAAGACCACGTTTCTATGGGAGCTAACGCAGCAACGAAGCTGCTTCCGATCATAGAAAACCTGGAGATGATCTTCGCCATCGAACTCCTCGATGCGGCCCAAGCCTTCGAATTCCGCCGTCCGACCAAGACGTCTCCGTTCTTGGAGAAGATGCTCGGCGAGCTGCGCAAGGTAGCTCCCAAGGTGGAGGACGATGTAGTCATGTACAAACAGATACAGGCAGCCACGGAGTTCGTTCGCGAATATGCTTTC","6.30","-6.02","54843","MARTSFQVGSEPLSLDLLREYLDSRFKLELSADAVRRIEHCRHYLDEKVKQSDKPIYGVTTGFGSLCNRTITPDQLTALQENLVKSHACSCGTPVHEDIVRLMLLLKAHALQLGHSGVQLCTVQRILDMLNNDVLPIVYDRGSLGASGDLAPLANLFLPLIGEGEVMYKGEKRNACDVMQEFGWKKIILKSKEGLALLNGTQFMSSHGVYALLKAHRLVEVADCIGALSLEAFDGLDAPFTDNLHIIRPHPGQLAVARHLKEVLKGSEQIARPKKQVQDPYSFRCMPQVHGASRDAIAYVTEVVIREINSVTDNPTVFPDEDLVVSGGNFHGQPLAIVYDFLAIALAELGNISERRTAQLILGLRNLPEFLVANPGLNSGFMIPQYAAAAMVSKNKMYCFSAASDSIVSSNGQEDHVSMGANAATKLLPIIENLEMIFAIELLDAAQAFEFRRPTKTSPFLEKMLGELRKVAPKVEDDVVMYKQIQAATEFVREYAF","359361 357682 [Bad Olap 394 196 0]","TIGR ID: PG0324","phenylalanine/histidine ammonia-lyase","Cytoplasm","Numerous significant hits in gapped BLAST to histidine ammonia-lyases. Residues 34-452 are 48% similar to AE006629 of Streptococcus pyogenes. Residues 13-494 are 42% similar to dbj|BAB05701.1| (AP001513), a histidase (histidine ammonia-lyase) in Bacillus halodurans. Residues 27-453 are 51% similar to gb|AAF12216.1|AE001862_42 (AE001862), a histidine ammonia-lyase in Deinococcus radiodurans.This sequence is similar to BT2690.","
InterPro
IPR001106
Family
Phenylalanine/histidine ammonia-lyase
PF00221\"[27-477]TPAL
PS00488\"[142-158]?PAL_HISTIDASE
InterPro
IPR005921
Family
Histidine ammonia-lyase
TIGR01225\"[6-497]ThutH
InterPro
IPR008948
Domain
L-Aspartase-like
SSF48557\"[4-497]TL-Aspartase-like
noIPR
unintegrated
unintegrated
G3DSA:1.10.275.10\"[4-200]TG3DSA:1.10.275.10
G3DSA:1.20.200.10\"[201-497]TG3DSA:1.20.200.10


","No hit to the COGs database.","***** IPB001106 (Phenylalanine ammonia-lyase (PAL)) with a combined E-value of 1.9e-25. IPB001106A 49-95 IPB001106B 120-173 IPB001106C 186-221 IPB001106D 222-276 IPB001106E 291-344 IPB001106F 389-443","Residues 9-494 are 40% similar to a (LYASE AMMONIA-LYASE METABOLISM) protein domain (PD001290) which is seen in HUTH_BACSU.","","Thu Jun 14 10:42:27 MDT 2001","","Thu Jun 14 10:42:27 MDT 2001","Thu Jun 14 10:42:27 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 10:42:27 MDT 2001","Thu Jun 14 10:42:27 MDT 2001","","","Thu Mar 1 09:20:23 MST 2001","Wed Dec 17 11:43:18 2003","Thu Mar 1 09:20:23 MST 2001","Tue Jun 19 16:11:54 MDT 2001","Tue Jun 19 16:11:54 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 09:20:23 MST 2001","-56% similar to PDB:1B8F HISTIDINE AMMONIA-LYASE (HAL) FROM PSEUDOMONAS PUTIDA (E_value = 2.6E_85);-56% similar to PDB:1GKM HISTIDINE AMMONIA-LYASE (HAL) FROM PSEUDOMONAS PUTIDA INHIBITED WITH L-CYSTEINE (E_value = 2.6E_85);-56% similar to PDB:1GKJ HISTIDINE AMMONIA-LYASE (HAL) MUTANT Y280F FROM PSEUDOMONAS PUTIDA (E_value = 7.7E_85);-56% similar to PDB:1EB4 HISTIDINE AMMONIA-LYASE (HAL) MUTANT F329A FROM PSEUDOMONAS PUTIDA (E_value = 2.2E_84);-56% similar to PDB:1GK3 HISTIDINE AMMONIA-LYASE (HAL) MUTANT D145A FROM PSEUDOMONAS PUTIDA (E_value = 2.2E_84);","","","Residues 5 to 477 (E-value = 5e-161) place PG0299 in the PAL family which is described as Phenylalanine and histidine ammonia-lyase (PF00221)","Tue Jun 19 16:11:54 MDT 2001","34540160","","","","","","1","","5","PG0324" "PG0301","359804","359178","627","ATGATTCTAACAGATCTTACAGTAAAAGGCTTCCTCGCCGAGACAGCAGGCCAGGAACCCGTACCCGGCGGAGGCAGTATCTCCGCTCTGAACGGCTCTATTGCAGCAGCATTGGCCGAAATGGTGGCTAACCTGACTATAGGCAAGAAGAAGTACGTCGAGGTGGAAGCAGAGATGCAGACTATCGCTACCGAAGCTGCCGCCATACAGAAAGAACTGGTATTGGATATCGACCGCGACAGCGATGCTTATAATAAGGTATTCGCCGCCTTCAAGCTCCCCAAGGAAACGGAGGAAGAGAAGGCCGTTCGCTCGGCTCAGATTCAGGAGATGACCAAATATGCGGCGTCCGTACCTATGGAGGTGGCTCGGCGTGTACACAGTCTGTTGCCGCTGATCGAAGCAGTCGTAGCCAAAGGCAATCAGAATGCCATTACGGACGGATGTGTAGCCATGATGTGCGCTCGCACGGCTATCATCGGTGCCCTGCTGAATGTTCGTATCAACCTGACGTCTATCAAGGACGAGGATTTCGTCAAGACGCATACGGAAGAAGCCAATGCGATCGAAGCCGATGCTATACGTCGCGAGGCCGAGATATTGGCTATCACCAAAAAAGCATGCGAA","4.80","-7.65","22403","MILTDLTVKGFLAETAGQEPVPGGGSISALNGSIAAALAEMVANLTIGKKKYVEVEAEMQTIATEAAAIQKELVLDIDRDSDAYNKVFAAFKLPKETEEEKAVRSAQIQEMTKYAASVPMEVARRVHSLLPLIEAVVAKGNQNAITDGCVAMMCARTAIIGALLNVRINLTSIKDEDFVKTHTEEANAIEADAIRREAEILAITKKACE","359804 359178 [Shorter 394 618 99]","TIGR ID: PG0325","conserved hypothetical protein (possible serine cycle enzyme,formiminotransferase cyclodeaminase)","Cytoplasm","Residues 8-179 are 41% similar to emb|CAC12595.1, a formiminotransferase cyclodeaminase related protein in Thermoplasma acidophilum. Resodues 7-180 ar 41% similar to gb|AAA62653.1 predicted serine cycle enzyme in Methylobacterium extorquensa and 37% similar to >gb|AAG23606 serine cycle enzyme in Carboxydothermus hydrogenoformans. PG0301 also shows weak similarity to a variety of short eukaryotic proteins.","
InterPro
IPR007044
Domain
Cyclodeaminase/cyclohydrolase
PF04961\"[6-202]TFTCD_C
noIPR
unintegrated
unintegrated
PTHR12234\"[1-209]TPTHR12234
SSF101262\"[2-208]TSSF101262


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 7-180 are 41% similar to a (FORMIMINOTRANSFERASE CYCLODEAMINASE TRANSFERASE) protein domain (PD037260) which is seen in SCE4_METEX.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Apr 6 14:09:48 MDT 2001","Thu Feb 15 10:58:58 MST 2001","Thu Feb 15 10:58:58 MST 2001","","Thu Feb 15 10:58:58 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 15 10:58:58 MST 2001","-55% similar to PDB:1TT9 Structure of the bifunctional and Golgi associated formiminotransferase cyclodeaminase octamer (E_value = 8.2E_25);-51% similar to PDB:1O5H Crystal structure of formiminotetrahydrofolate cyclodeaminase (TM1560) from Thermotoga maritima at 2.80 A resolution (E_value = 3.5E_20);-54% similar to PDB:1RA4 Crystal structure of the Methanococcus jannaschii L7Ae protein (E_value = 3.5E_20);-54% similar to PDB:1SDS Structure of protein L7Ae bound to a K-turn derived from an archaeal box H/ACA sRNA (E_value = 3.5E_20);-54% similar to PDB:1XBI High resolution structure of Methanocaldococcus jannaschii L7AE (E_value = 3.5E_20);","","","Residues 1 to 202 (E-value = 5.5e-61) place PG0301 in the FTCD_C family which is described as Formiminotransferase-cyclodeaminase (PF04961)","Fri Mar 9 14:31:56 MST 2001","34540161","","","","","","1","","5","PG0325" "PG0302","361064","359832","1233","ATGCGATCGGCGGACTCGTCGCCGGCATATTCGCCCATTGGCTCTTTGTCCTCATCTCACTCATTTGATTCGATACCCGACCAACGTATGAACAAATCGCTATTATCATTGGCATGCCTCATCCTGTGCGGTATGCCGGCCATCGCCCAACAGACAGGACCGGCCGAACGCAGCGGCGAGCCTTCTCTGGCCGAACGTGTATTCGGTCTGGAGCAGAAGCAGAAAAAGCTGAAGGTGTACTTAGGCATACAGTCGTTCTACGACCAGCCGCTTGTCGATGACGAATCCCATATCGGACACTTCAAGGTACAGGAGCTGCGGATGTCTGCTCATGGCGAACTGAACCGCCACCTCAGCTTCGACTGGCGACAACGTCTCAACCGTGCCGCCGACGGCACTTCGTTTGCCGACAATCTCTCCAATGCCATCGACATCGCAGGTGTGGACTGGCACCCGAACGACAAGGTGTCTTTCTTCTTCGGACGTCAGTACGCGCGTTTCGGAGGGATAGAATACGACATGAACCCCGTAGAGATCTACCAGTACAGCGACCTTGTGGATTACATGACCTGCTATACTTCGGGCGTGAACTTCGCATGGAACTTCCACCCCGAACAGCAGCTGCAGCTACAGGTACTCAATGCTTACAACAACCGCTTCGCCGACCGCTACCACGTGACACCCGATGTCGCTACCGCCACGAGCTACCCGCTCCTCTACTCGGCACAGTGGAACGGTACCCTCCTCGGAGGAGCACTGCATATGCGTTACGCCGTGTCGATGGCTCATCAGGCCCAAGAGCGTAATATGTGGTACTTCACTGCGGGCAACCTGTTCAATCCGGGCAAACGGATCAACGGATACCTCGACCTCACCTACTCGATCGAGGGATTGGACGACAAAGGCATTATGACTGCTCGCTACGGCAAGGGCAAGACCCTCACGGACGTCAAGTACTATGCTCTGGTATCGAAGTGGAACTTCCGCATTTTCGATCAGGTCAATCTCTTCCTCAAAGGCATGTACGAGAACGGCTATGCGCCTGCCCAATACGGCGAGAGCAGCCACACGCGCCACTCCTACGGCTATATGGGAGGGGTGGAATATTACCCTACGGAGACCAACTTCCGTCTGTTCGTCACCTACATAGGACGGCATTACCGGTACAGTGCGACCGAGACGGAAAGCACCAATGCTCTTCGCGCCGGTCTGATCTATCAGATACCTTTCTTA","7.00","0.00","46828","MRSADSSPAYSPIGSLSSSHSFDSIPDQRMNKSLLSLACLILCGMPAIAQQTGPAERSGEPSLAERVFGLEQKQKKLKVYLGIQSFYDQPLVDDESHIGHFKVQELRMSAHGELNRHLSFDWRQRLNRAADGTSFADNLSNAIDIAGVDWHPNDKVSFFFGRQYARFGGIEYDMNPVEIYQYSDLVDYMTCYTSGVNFAWNFHPEQQLQLQVLNAYNNRFADRYHVTPDVATATSYPLLYSAQWNGTLLGGALHMRYAVSMAHQAQERNMWYFTAGNLFNPGKRINGYLDLTYSIEGLDDKGIMTARYGKGKTLTDVKYYALVSKWNFRIFDQVNLFLKGMYENGYAPAQYGESSHTRHSYGYMGGVEYYPTETNFRLFVTYIGRHYRYSATETESTNALRAGLIYQIPFL","361064 359832","TIGR ID: PG0326","hypothetical protein","Outer membrane, Extracellular","No significant hit found in gapped BLAST with E value less than e-04.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Feb 15 11:03:59 MST 2001","","Thu Feb 15 11:03:59 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 15 11:03:59 MST 2001","-43% similar to PDB:2FGW X-RAY STRUCTURES OF FRAGMENTS FROM BINDING AND NONBINDING VERSIONS OF A HUMANIZED ANTI-CD18 ANTIBODY: STRUCTURAL INDICATIONS OF THE KEY ROLE OF VH RESIDUES 59 TO 65 (E_value = );-62% similar to PDB:1VKP X-RAY STRUCTURE OF GENE PRODUCT FROM ARABIDOPSIS THALIANA AT5G08170, AGMATINE IMINOHYDROLASE (E_value = );-41% similar to PDB:1MBA APLYSIA LIMACINA MYOGLOBIN. CRYSTALLOGRAPHIC ANALYSIS AT 1.6 ANGSTROMS RESOLUTION (E_value = );-41% similar to PDB:2FAL X-RAY CRYSTAL STRUCTURE OF FERRIC APLYSIA LIMACINA MYOGLOBIN IN DIFFERENT LIGANDED STATES (E_value = );-41% similar to PDB:2FAM X-RAY CRYSTAL STRUCTURE OF FERRIC APLYSIA LIMACINA MYOGLOBIN IN DIFFERENT LIGANDED STATES (E_value = );","","","No significant hits to the Pfam 11.0 database","","34540162","","","","","","1","","5","PG0326" "PG0303","362151","361000","1152","ATGGAGACAAGATCTCAACACAAGAAACTGACGTTCAGGCGTCATCTCTTCGAAGCCCTCGGCTTCATCATTCTCTTCTTCGCCATATTCGGCTATGTAGGGCATGTCATGGGTCTGCCCAATATGCTCAATACGATTATGCAGACCTCCTACCACCTCCTGCTCGAGACCGTATTCTATATTATGGGTATCACGGTACTGAGCGGAGCCTTGGGCAGTCTGCTCGTGGAGTTCCATGTCGTGGATATGCTCGAGCGTATCCTCAGGCCCCTGATGAAGCCCCTTTACAACCTGCCGGGCGTGTCGGCACTCGGAGGCATCCTCACCTTCCTTAGCGACAATCCCGCCATCATCTCTCTGGCACAGGATCGCAAGTTCTGCTCCTACTTCAAGAAATATCAGCTCGTCAGCCTCACCAACTTCGGTACGGCTTTCGGCATGGGTATGGTCGTTATCATCTTCATGGCAGGACAGGGCTACGGCAGCGGTGCCATCATCGGCCTCTTCGGAGCCATCATCGGCAGTATCGTCAGCACTCGTCTGATGCAGCGGAGCACGCTCCGCCGCTATCCGGAAATGGACAGTCCGGTCAATGTGGAGGAGATGCAGCACGAGGAAACGAAAGAGCATAAGGAGAACCTTTTCCTGCGTATGCTCAATGCCGTACTGGACGGCGGCAAGACGGGTGTAGACCTCGGTATCGCCATCATCCCCGGCGTACTCATCATCAGTACGGCCGTTATGATGCTCACCAACGGACCTGCCGGACCCGACGGCACCTTCGCCGGCAAGGCATACGAAGGCGTCGGCCTGCTGCCGGCCCTTGCCGACAAGGTGGACTTCCTCTTCCGCTGGCTCTTCGGCTTCACCGATTCCCGCCTCATCGCCTTCCCGATCACCGCGCTCGGAGCAGTCGGTGCAGCCCTCGGACTGGTACCCAACTTCTCGGCGCAAGGTATCCTGGACGGCAATGCAGTAGCCGTTTTCACCGCCATGGGTATGTGCTGGAGCGGCTTCCTCAGTACGCACACGGCCATGCTCGACAGTCTCAAGTACCGCCGCCTCATCACACAGGCGATCGGAGCACATGCGATCGGCGGACTCGTCGCCGGCATATTCGCCCATTGGCTCTTTGTCCTCATCTCACTCATT","8.60","4.31","41674","METRSQHKKLTFRRHLFEALGFIILFFAIFGYVGHVMGLPNMLNTIMQTSYHLLLETVFYIMGITVLSGALGSLLVEFHVVDMLERILRPLMKPLYNLPGVSALGGILTFLSDNPAIISLAQDRKFCSYFKKYQLVSLTNFGTAFGMGMVVIIFMAGQGYGSGAIIGLFGAIIGSIVSTRLMQRSTLRRYPEMDSPVNVEEMQHEETKEHKENLFLRMLNAVLDGGKTGVDLGIAIIPGVLIISTAVMMLTNGPAGPDGTFAGKAYEGVGLLPALADKVDFLFRWLFGFTDSRLIAFPITALGAVGAALGLVPNFSAQGILDGNAVAVFTAMGMCWSGFLSTHTAMLDSLKYRRLITQAIGAHAIGGLVAGIFAHWLFVLISLI","362151 361000","TIGR ID: PG0327","conserved hypothetical protein","Inner membrane, Cytoplasm","Its nearest neighbor in the NR database is gi:42527827 from Treponema denticola ATCC 35405.","
InterPro
IPR011642
Domain
Nucleoside recognition
PF07670\"[58-159]TGate
noIPR
unintegrated
unintegrated
SSF103473\"[2-251]TSSF103473


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Mar 1 15:58:52 2005","Tue Mar 1 15:58:52 2005","Thu Feb 15 11:06:00 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 15 11:06:00 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540163","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Tue Mar 1 15:58:52 2005","","1","","5","PG0327" "PG0304","363516","362248","1269","ATGCCTAACACCCCCCACACAATGAACCTCTACATCAAGAATATCGCCCAGCTCGTCACCTGCCAAGGCTCCGAAGCCAAACACGGCCGCGAAGCCATGGGGCAGATACACACCATCGAAGGCCCTGCCGCAGTAGTTATCCGCGACGGCATCATCGCCTTCGCCGGCCGCATGGCGGACGTAGCCCCGTCCATGACCGAAGGCTGCCGGGAGCTGGACGCCACGGGACGCTGCGTACTGCCGGGCTTTGTGGACAGCCACACCCATCTCGTCTTCGGCGGCTACAGGGAAGATGAGTTCCAATGGCGGCTCGCCGGCGACAGCTACATGAGTATCATGGAGCGCGGCGGAGGGATCGCCAGCACCATGCGCGCTACTCGTTCCGAATCGGAAGACGAGCTGAAAGCATCGGCCCGACGGCACCTCTCCAATATGATGAAGATGGGCGTCACCACCGTAGAGGCCAAGAGCGGATACGGGATGAACCTCGAGACGGAGCTGAAGCAGCTGCGCGTAGTGCGCGACCTGCAGGACGAGCAGCCCCTCGACCTCTACTCCACCTTCATGGGAGCACATGACACTGCGCCCGAATACAAAGGACGTCCCACCGAATTCATCGAGTACCTCTGCCGCGAAGTACTGCCCGAAGTCGTACGACAGAATTTGGCCGAGTGCTGCGACATCTTCACCGAGAAGGGCGTATTCGATCACGAACAGACCCGACGCATGCTCACGGCCGCCAAGGAAGCAGGGCTCTCCGTCAAGATGCATGCAGACGAGATCGTGCCATTCGGCGGAGCTGAGCTGGCTGCCGAACTGGGATGCCTCTCGGCAGATCATCTGCTTCGGATATCCGACGCGGGAATTAAGGCCCTGGCCGAAAGCAACACCGTGGCCACTCTGCTACCGTGTACCGCCTTCAGCCTCCGTGCCGACTACGCTCCGGCCCGTAAGATGATCGACGCCGGCTGTGCCGTTGCACTGGGGAGCGACCTCAATCCGGGCAGTTGCTTCTCGGCTTCCGTCCCCCTCATGTTTGCCCTTGCCACCCTCTACATGGGCATGACCGTCGAAGAAGCCATCACAGCCCTCACGATCAACGGGGCTGCAGCCATAGGAAGAGCCGATACGATCGGCAGCATCGAGCCGGGCAAGAAGGGCGACCTCGTCGTACTCCAATACCCATCGTACAAATTCCTCTCCTATCACTTCGGTATGAACCTCGTGGAGCATACCGTCAAAGGAGGCAGGGTCGTCTACACCAACTCA","5.50","-10.55","45871","MPNTPHTMNLYIKNIAQLVTCQGSEAKHGREAMGQIHTIEGPAAVVIRDGIIAFAGRMADVAPSMTEGCRELDATGRCVLPGFVDSHTHLVFGGYREDEFQWRLAGDSYMSIMERGGGIASTMRATRSESEDELKASARRHLSNMMKMGVTTVEAKSGYGMNLETELKQLRVVRDLQDEQPLDLYSTFMGAHDTAPEYKGRPTEFIEYLCREVLPEVVRQNLAECCDIFTEKGVFDHEQTRRMLTAAKEAGLSVKMHADEIVPFGGAELAAELGCLSADHLLRISDAGIKALAESNTVATLLPCTAFSLRADYAPARKMIDAGCAVALGSDLNPGSCFSASVPLMFALATLYMGMTVEEAITALTINGAAAIGRADTIGSIEPGKKGDLVVLQYPSYKFLSYHFGMNLVEHTVKGGRVVYTNS","363687 362248","TIGR ID: PG0328","imidazolonepropionase (imidazolone-5-propionate hydrolase)","Cytoplasm","Numerous significant hits to imidazolonepropionase in gapped BLAST. Residues 5-419 are 47% similar to Z99124 of B.subtilis. Residues 14-420 are 47% similar to dbj|BAB05703.1 of B.halodurans. Residues 38-418 are 44% similar to AE006628 of Streptococcus pyogenes.This sequence is similar to BT2692.","
InterPro
IPR005920
Family
Imidazolonepropionase
TIGR01224\"[40-418]ThutI
InterPro
IPR006680
Domain
Amidohydrolase 1
PF01979\"[78-393]TAmidohydro_1
InterPro
IPR011059
Domain
Metal-dependent hydrolase, composite
SSF51338\"[1-420]TMetalo_hydrolase
InterPro
IPR011550
Domain
Amidohydrolase-like
PD001248\"[354-391]TAmidohydro_like
noIPR
unintegrated
unintegrated
G3DSA:3.20.20.140\"[82-376]TG3DSA:3.20.20.140
PTHR22642\"[4-422]TPTHR22642
SSF51556\"[82-377]TSSF51556


","BeTs to 4 clades of COG1228COG name: Imidazolonepropionase and related amidohydrolasesFunctional Class: RThe phylogenetic pattern of COG1228 is a-tKy-v--br----------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 230-392 are 28% similar to a (HYDROLASE PROTEIN CHLOROHYDROLASE) protein domain (PD003539) which is seen in TRZA_RHOCO.Residues 145-353 are 51% similar to a (IMIDAZOLONEPROPIONASE IMIDAZOLONE-5-PROPIONATE HYDROLASE) protein domain (PD014595) which is seen in Q54249_STRGN.Residues 76-142 are 56% similar to a (IMIDAZOLONEPROPIONASE IMIDAZOLONE-5-PROPIONATE HYDROLASE) protein domain (PD023469) which is seen in HUTI_BACSU.Residues 363-419 are 40% similar to a (IMIDAZOLONEPROPIONASE IMIDAZOLONE-5-PROPIONATE HYDROLASE) protein domain (PD038142) which is seen in HUTI_BACSU.","","Thu Jun 14 10:42:51 MDT 2001","","Thu Jun 14 10:42:51 MDT 2001","Thu Jun 14 10:42:51 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 10:42:51 MDT 2001","Thu Jun 14 10:42:51 MDT 2001","","","Wed Feb 21 15:01:27 MST 2001","Wed Dec 17 11:45:44 2003","Thu Feb 15 11:31:17 MST 2001","","Tue Jun 19 16:17:02 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 15 11:31:17 MST 2001","-64% similar to PDB:2BB0 Structure of Imidazolonepropionase from Bacillus subtilis (E_value = 3.7E_101);-64% similar to PDB:2G3F Crystal Structure of imidazolonepropionase complexed with imidazole-4-acetic acid sodium salt, a substrate homologue (E_value = 3.7E_101);-57% similar to PDB:2GOK Crystal structure of the imidazolonepropionase from Agrobacterium tumefaciens at 1.87 A resolution (E_value = 1.1E_71);-57% similar to PDB:2OOF The crystal structure of 4-imidazolone-5-propanoate amidohydrolase from environmental sample (E_value = 6.6E_66);","","","Residues 78 to 393 (E-value = 3.1e-11) place PG0304 in the Amidohydro_1 family which is described as Amidohydrolase family (PF01979)","Tue Jun 19 16:17:02 MDT 2001","34540164","","","","","","1","","5","PG0328" "PG0305","364519","363620","900","ATGGCATTATCAAGAATCATGGAGTGCGTGCCCAACTTCTCGGAAGGCCGCGACAAAGAGAAAATCGAAAAGATAGTAAACCCCTTCCGCACGCGCGAAGGCGTCAAGCTGCTGAACTATAGCAACGATGAGGATCACAACCGTCTCGTCGTGACCGTAGTGGGCGAACCCGAGCCCCTTCGGGAGGCAGTGCTCGAAGCCGTTGGCATAGCCGTAGAGCTGATCGACCTGACCAAACACACGGGTCAGCACCCCCGTATGGGCGCAGTGGACGTGATCCCCTTTATCCCCATCAAGAATGTGACTGCCGAAGACGCCGACACCCTCGCCAAGGAGGTAGGCCGCACGATAGGCGAGAAGTACGGCGTGCCCGTATTCCTCTATGAGAAATCGGCTACCGCTCCCCACCGTGAAAACCTGGCCAAGATCCGCAAAGGCGAGTTCGAAGGCATGGCAGAGAAGATACACGAAGCCGACTGGCATCCCGACTTCGGCCCGGCCGATCGTCACCCGACAGCCGGCACCGTGGCAGTCGGCGCCCGCATGCCGCTCGTCGCTTACAACGTGAACCTCAATACGAACGACCTCTCCATCGCGGACGCCATCGCCAAGAAGGTACGCTTCCTCGGCGGCGGTCTGCGCTTCTGCAAGGCCATGGGCGTAGAGCTTACCGACCGCGGCATCGTGCAGGTGTCCATGAACCTGACGGACTTCACCAAGACGGCTGTCTATCGCGCTCATGAGATGGTACGCATGGAAGCCGCCCGATACGGCGTATCCGTCGTAGGCAGCGAAGTGATCGGACTCGTACCCATGCAGGCACTGATCGACTGTGCCGAATACTACCTCGGCATCGAAAACTTCTCCATGGATCAGATCCTCGAATCACGGATCATGGAG","5.50","-7.19","33182","MALSRIMECVPNFSEGRDKEKIEKIVNPFRTREGVKLLNYSNDEDHNRLVVTVVGEPEPLREAVLEAVGIAVELIDLTKHTGQHPRMGAVDVIPFIPIKNVTAEDADTLAKEVGRTIGEKYGVPVFLYEKSATAPHRENLAKIRKGEFEGMAEKIHEADWHPDFGPADRHPTAGTVAVGARMPLVAYNVNLNTNDLSIADAIAKKVRFLGGGLRFCKAMGVELTDRGIVQVSMNLTDFTKTAVYRAHEMVRMEAARYGVSVVGSEVIGLVPMQALIDCAEYYLGIENFSMDQILESRIME","364519 363620","TIGR ID: PG0329","formiminotransferase-cyclodeaminases (FTCD)","Cytoplasm","Residues 5 to 300 show 54% identity with a putative formiminotransferase-cyclodeaminase/formiminotetrahydrofolate cyclodeaminase in Thermotoga maritima, pir||D72326. Residues 6 to 298 show a 46% identity with a probable glutamate formiminotransferase in Thermoplasma acidophilum, emb|CAC12594.1. There is also strong similarity (41%) to a formiminotransferase-cyclodeaminase in Rattus norvegicus, gb|AAC28849.2 and various other vertebrate formiminotransferase-cyclodeaminases (FTCD). This sequence is similar to BT2693.","
InterPro
IPR004227
Domain
Formiminotransferase
TIGR02024\"[3-300]TFtcD
InterPro
IPR012886
Domain
Formiminotransferase, N-terminal
G3DSA:3.30.990.10\"[4-181]TFormiminotransferase_N
PF07837\"[5-182]TFTCD_N
InterPro
IPR013802
Domain
Formiminotransferase, C-terminal
G3DSA:3.30.70.670\"[184-298]TFormiminotransferase_C
PF02971\"[184-297]TFTCD
noIPR
unintegrated
unintegrated
PTHR12234\"[137-299]TPTHR12234
SSF55116\"[4-182]T\"[183-298]TFormiminotr


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 3-292 are 40% similar to a (FORMIMINOTRANSFERASE CYCLODEAMINASE TRANSFERASE) protein domain (PD133751) which is seen in FTCD_PIG.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Feb 21 13:46:37 MST 2001","Wed Dec 17 11:47:41 2003","Wed Feb 21 13:46:37 MST 2001","","Wed Feb 21 13:46:37 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Feb 21 13:46:37 MST 2001","-61% similar to PDB:1TT9 Structure of the bifunctional and Golgi associated formiminotransferase cyclodeaminase octamer (E_value = 5.0E_59);-60% similar to PDB:1QD1 THE CRYSTAL STRUCTURE OF THE FORMIMINOTRANSFERASE DOMAIN OF FORMIMINOTRANSFERASE-CYCLODEAMINASE. (E_value = 9.5E_58);-47% similar to PDB:2B5D Crystal structure of the novel alpha-amylase AmyC from Thermotoga maritima (E_value = 9.5E_58);-50% similar to PDB:1YYA Crystal structure of TT0473, putative Triosephosphate Isomerase from Thermus thermophilus HB8 (E_value = 9.5E_58);-60% similar to PDB:1NVT Crystal structure of Shikimate Dehydrogenase (AROE or MJ1084) in complex with NADP+ (E_value = 9.5E_58);","","","Residues 184 to 297 (E-value = 5.4e-28) place PG0305 in the FTCD family which is described as Formiminotransferase domain (PF02971)","Fri Mar 9 15:54:52 MST 2001","34540165","","","","","","1","","5","PG0329" "PG0306","365083","364571","513","ATGTCCCTAAAGTATGTGATCAAAAAGTCTGTCGCCAAGATCGGCCCCAAAGCCGGACAGACCATCTATTATGCCCAGCCGGCGGCACAAGACTCTGTAACCTTCCACAGCCTCTGCAAGCGAATAGCCGAGGAGTCGGCTCTGACCTCCGCCGACGTCAAAGGCATCCTGGACCGCCTCGTCAATATCCTCAGCGAGGAGCTGCCCAACGGCAAGACGGTTCGCATCGGCGAGCTGGGCAGCTTCCGCCTCTCGTTCGGTTCCAAACAATTGGACGACCCCAAGAATTTCTCTGTAGATCAGATCCAGAAGCACAGGCTCGTCTTCATCCCCTCGGCAGAGCTCAAGAGCATCCCCGCACGCGGCAAGCTCCGCCCGGGGTCTTCAGCCCTGGCCTTCGACTACGAGCGTGTGGAGCCGCAGCCTAAGAAGAAACCCGGCACAGGCGACAATCAGACGCCCTCTCCCTCCACACCCGATGGTGGCGGCGGACAGGGAGGCACGGGCGGACTG","10.30","7.42","18235","MSLKYVIKKSVAKIGPKAGQTIYYAQPAAQDSVTFHSLCKRIAEESALTSADVKGILDRLVNILSEELPNGKTVRIGELGSFRLSFGSKQLDDPKNFSVDQIQKHRLVFIPSAELKSIPARGKLRPGSSALAFDYERVEPQPKKKPGTGDNQTPSPSTPDGGGGQGGTGGL","365083 364571","TIGR ID: PG0330","hypothetical protein","Periplasm","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR005902
Family
Putative DNA-binding protein, HU-related
TIGR01201\"[1-171]THU_rel
InterPro
IPR010992
Family
IHF-like DNA-binding
SSF47729\"[32-125]TIHF_like_DNA_bnd


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Mar 27 17:44:34 MST 2001","","Wed Feb 21 13:56:46 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 3 to 171 share 33% identity with PG0200. Residues 3-116 also share 33% identity with PG1221. Residues 1-170 share 27% identity with PG1781.","Wed Feb 21 13:56:46 MST 2001","Wed Feb 21 13:56:46 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Mar 27 17:44:34 MST 2001","34540166","","","","","","1","","5","PG0330" "PG0307","365759","367732","1974","ATGCAGAAGTACACGATCGTCGATTTGAACGAAAAGGCTGAAGCTGAACTCGCTGCTATAGCCGGCGAGCTGGGTATTGCCAATGCCGGCTCAATGCCCAAACAAGAACTTATTTACAAAATACTCGACGAGCAGGCTATCAGTGTAGCCGGCGTCCGGAAGGAAAAACAAAAAACGACGGAAGACCGGCACACCGAAAGGCGCAAGCCGGGTCGTCCGCGCAAAAACGCCGAGGAGGAAGCTCCCGAAAGCGAAGACGTCGCAGCCGCTCCTGCCGAGCCGAACGACGAGGAAGCTCAGGCCAAACGCAAGCGTGGCCGCCCTCGCAAAGCGGCGGAAGAGATAGCGGAAGAGACCCGGGAAGATGTGCAGCAGCTCGTGGCTCTGGCTGCTGCAGAGGAGACAAATGCAACGGAGAAGGAGAGTGCCGGGCGGAAGCCGGCGGCGAAAACGTCCACCGCATCCCCTGCCAAAGCCCCTGCCAAAGCCCTTCCCCGTCCGGCGGAGACCACCCCGCGCGTGGCACCGTCTCCCCCTCCCACGACGCCCGTGAGCGAGCCGGCCAAGGACGATGCCAAGCCCGAGACGCCCGCTCCTCCCCCCGCCATCGAGTCCATCACCACGACTCCTGCTGCCGGAGCCGTCGATGAGGGCGGTGCTCGCCGCCTCGTATTCAGGCACAAGAACAGCTCCTCGGTATTGGATCAGGTGCTGCCGTACAGCTCTCCCCAGCCCCCGCAGAGGCCCAAACCGGCCGGTGCTCCGGTCGGCAGCAGCCCGATCAGGCAGCGACAGGCGGCCGGCGTGCCGACTCCCCGTCGCGAACCTCAGCAACCTCTCTACAACTTCGACGGCATCCTCGAGTGCATGGGTGTACTGGAGATCATGCCCGACGACTACGGATTCCTCCGCTCCTCGGACTACAACTATCTGTCCTCTCCGGACGATGTGTACGTGTCCCAGCAGCAGATCAAGCACAACGGACTCAAGACGGGCGACGTCGTGGCAGGTACTATCCGTCCGCCCAGAGAGGGGGAGAAGTACTTCCCCTTCGTGCAGCTGCGGAGTGTGAACGGTCGCAGCCCCGAAGAGATCCGCGACCGCGTGCCCTTCGATCATCTCACACCCCTCTTCCCCGAAGAGAAGTTCACCCTCGAAGCACCGGGCATCCGTGCCGTAAACGATAAAATATCCGTCCGCGTCGTAGACCTCTTCGCCCCCATAGGCAAAGGACAGCGCGGCCTGATCGTATCGCAGCCCAAGACGGGTAAGACGATGCTCCTCAAGGACATTGCCAATGCCATCGCAGCCAATCACCCCGAAGTGTACATGATCGTCCTGCTCATCGACGAGCGTCCCGAAGAGGTCACCGACATGGCGCGAAGTGTGAACGCCGAGGTCATCGCTTCCACCTTCGACGAGCCGGCAGAGCGTCACGTGAAGATCGCCGAGATCGTCCTGAACAAAGCCAAAAGAATGGTGGAGTGCGGTCATGACGTAGTCATCCTGCTCGACTCCATCACCCGCCTGGCACGTGCATACAATACCGTACAGCCCGCATCGGGCAAGGTGCTCTCCGGTGGTGTCGATGCCAATGCCCTGCAGAAGCCGAAACGCTTCTTCGGTGCCGCTCGCAACATCGAAAACGGCGGTAGTCTCACCATTCTGGCCACGGCGCTGACCGACACGGGTTCTAAGATGGACGAGGTGATATTCGAAGAGTTCAAGGGTACGGGCAATATGGAGCTGCAGCTCGATCGCCGCCTGTCCAACAAACGCATATTCCCCGCCGTGGACATCATGTCCAGCAGTACCCGTCGCGACGACTTGCTGCAGGACGAGACCACGCTGAACCGTATGTGGATCCTGCGCAAGTACCTCTCCGACATGAATCCTGTCGAAGCCATGGAGTTTGTGCGTAAGCAGCTGGAGAATACGCATACCAATATGGAGTTCCTCGCCTCGATGAACAAC","6.10","-5.07","72232","MQKYTIVDLNEKAEAELAAIAGELGIANAGSMPKQELIYKILDEQAISVAGVRKEKQKTTEDRHTERRKPGRPRKNAEEEAPESEDVAAAPAEPNDEEAQAKRKRGRPRKAAEEIAEETREDVQQLVALAAAEETNATEKESAGRKPAAKTSTASPAKAPAKALPRPAETTPRVAPSPPPTTPVSEPAKDDAKPETPAPPPAIESITTTPAAGAVDEGGARRLVFRHKNSSSVLDQVLPYSSPQPPQRPKPAGAPVGSSPIRQRQAAGVPTPRREPQQPLYNFDGILECMGVLEIMPDDYGFLRSSDYNYLSSPDDVYVSQQQIKHNGLKTGDVVAGTIRPPREGEKYFPFVQLRSVNGRSPEEIRDRVPFDHLTPLFPEEKFTLEAPGIRAVNDKISVRVVDLFAPIGKGQRGLIVSQPKTGKTMLLKDIANAIAANHPEVYMIVLLIDERPEEVTDMARSVNAEVIASTFDEPAERHVKIAEIVLNKAKRMVECGHDVVILLDSITRLARAYNTVQPASGKVLSGGVDANALQKPKRFFGAARNIENGGSLTILATALTDTGSKMDEVIFEEFKGTGNMELQLDRRLSNKRIFPAVDIMSSSTRRDDLLQDETTLNRMWILRKYLSDMNPVEAMEFVRKQLENTHTNMEFLASMNN","transcription termination factor rho","The rho protein binds to nascent mRNA and therebyfacilitates termination of transcription. It has anRNA-dependent ATPase activity. Rho is part of ahomohexamer.TIGR ID: PG0332","transcription termination factor rho","Cytoplasm, Periplasm","This sequence is also orthologous to CT491.One significant hit where residues 58-657 of PG0307 are 38% similar to transcription termination factor Rho of Mycobacterium tuberculosis. Other numerous significant hits of the C-terminal portion of PG0307 to Rho proteins; e.g. residues 285-658 are 61% similar to AJ235272 of Rickettsia prowazekii, residues 291-657 are 61% similar to AP003004 of Mesorhizobium loti, residues 291-656 are 62% similar to AE004936 of Pseudomonas aeruginosa. N-terminal residues show very weak similarity to a putative zinc metalloprotease of Streptococcus pneumoniae (AF221126).This sequence is similar to BT1595.","
InterPro
IPR000194
Domain
ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding
PF00006\"[397-605]TATP-synt_ab
InterPro
IPR000637
Domain
HMG-I and HMG-Y, DNA-binding
PR00929\"[67-77]T\"[100-110]TATHOOK
PF02178\"[67-79]T\"[102-114]TAT_hook
SM00384\"[67-79]T\"[102-114]TAT_hook
InterPro
IPR003593
Domain
AAA+ ATPase, core
SM00382\"[410-595]TAAA
InterPro
IPR004665
Family
Transcription termination factor Rho
TIGR00767\"[4-658]Trho
InterPro
IPR011112
Domain
Rho termination factor, N-terminal
PF07498\"[8-50]TRho_N
InterPro
IPR011113
Domain
Rho termination factor, RNA-binding
PF07497\"[287-364]TRho_RNA_bind
InterPro
IPR011129
Domain
Cold shock protein
SM00357\"[290-356]TCSP
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[367-658]TG3DSA:3.40.50.300
PTHR15184\"[260-636]TPTHR15184
PTHR15184:SF2\"[260-636]TPTHR15184:SF2
SSF50249\"[286-363]TNucleic_acid_OB
SSF52540\"[328-612]TSSF52540
SSF68912\"[4-50]TSSF68912


","BeTs to 10 clades of COG1158COG name: Transcription termination factor rhoFunctional Class: KThe phylogenetic pattern of COG1158 is -----qv-ebrhuj--olinxNumber of proteins in this genome belonging to this COG is 1","***** IPB000194 (ATP synthase alpha and beta subunit) with a combined E-value of 7.9e-29. IPB000194A 403-422 IPB000194B 463-506 IPB000194C 515-552 IPB000194D 570-607","Residues 605-657 are 52% similar to a (RHO TRANSCRIPTION TERMINATION FACTOR) protein domain (PD004116) which is seen in O67031_AQUAE.Residues 291-358 are 57% similar to a (RHO TRANSCRIPTION TERMINATION FACTOR) protein domain (PD004044) which is seen in RHO_HAEIN.Residues 372-603 are 70% similar to a (HYDROLASE HYDROGEN ION TRANSPORT ATP SYNTHASE) protein domain (PD000090) which is seen in RHO_RHOSH.","","Thu Jun 14 10:43:10 MDT 2001","","Thu Jun 14 10:43:10 MDT 2001","Thu Jun 14 10:43:10 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 10:43:10 MDT 2001","Thu Jun 14 10:43:10 MDT 2001","Wed Mar 22 10:17:52 MST 2000","Wed Jun 20 10:39:32 MDT 2001","Wed Mar 22 10:17:52 MST 2000","Thu Dec 4 15:55:29 2003","Wed Jun 6 11:02:16 MDT 2001","Wed Jun 20 10:39:32 MDT 2001","Wed Jun 20 10:39:32 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Jun 6 11:02:16 MDT 2001","-77% similar to PDB:1PV4 X-ray crystal structure of the Rho transcription termination factor in complex with single stranded DNA (E_value = 6.1E_125);-77% similar to PDB:1PVO X-ray crystal structure of Rho transcription termination factor in complex with ssRNA substrate and ANPPNP (E_value = 6.1E_125);-77% similar to PDB:1XPO Structural mechanism of inhibition of the Rho transcription termination factor by the antibiotic bicyclomycin (E_value = 6.1E_125);-77% similar to PDB:1XPR Structural mechanism of inhibition of the Rho transcription termination factor by the antibiotic 5a-formylbicyclomycin (FB) (E_value = 6.1E_125);-77% similar to PDB:1XPU Structural mechanism of inhibition of the Rho transcription termination factor by the antibiotic 5a-(3-formylphenylsulfanyl)-dihydrobicyclomycin (FPDB) (E_value = 6.1E_125);","","","Residues 441 to 611 (E-value = 2.1e-38) place PG0307 in the ATP-synt_ab family which is described as ATP synthase alpha/beta family, nucleotide-binding domain (PF00006)","Wed Jun 20 10:39:32 MDT 2001","34540167","","","","","","1","","5","PG0332" "PG0308","367963","368868","906","ATGACATCTTCACGCCTCTACGGTCTTGCGGTCGGTATACTGTCGTCCGCCACATTCGGGCTCATCCCCCTGTTCACGCTGCCGGTTTCGGCTAAGGGTGCTTCGTTCGAGCTTATTCTCTTCTATCGCTTTTTCTTCGCAGCCATCGCCATCGGTATACTGCATCGCCTCTCGGGCGGCAGCTTCAAAGTCAGCCGTGCGGATATAGGGCCGCTGGTATTGCTGGGCTTCTTGTATGCCGGCACGGCACTTTTCCTCTTTCACGGCTATGGCTATATGGCCAGCGGTGTAGCCACCACCATCCACTTCCTCTATCCGCTGTTCGTCACGGCTCTGATGCTTCTTTTCTTTGGGGAAAGACTTTCGCCCGTGCCATTGACGGCCATTTTCATCGCCCTGATAGGCGTGGGCCTGCTGATGGGCCTTACGGGAGGGGGCGATCGGGTAGGGCTTACCGGCTTTGTGATAGTCGCCATCTCGGCGCTTTGCTATGCCCTCTATATCGTCTTTGTCAATCGGAGCCGGATCCGAATCATGCCGGGACGGCGGCTGACGTTCTACGTCTTCGTCGCAGCCGCAGGTTTTTGCCTGATCAACGTCCTGGTCAGACAGGGCGAAGTGGCTCCTCTTCCCGACGCGGCTTCATGGGGCAATATCCTGCTCTTGGCTTTGGTGCCGACGGTAATTTCCAATCTGGCTTTGGTAGTGGCTGTACGCAACATCGGCTCCACGCTCACCTCTGCGCTGGGAGCTATGGAGCCGCTTACGTCCGTATTGGTAGGTGTGTGGGTCTTCGACGAGGTGTTGGGGGCCTCCGCTATAGTCGGTATGGGCTGTATCCTCATAGCCGTCGGGCTTATCGTCTTCTCCGAACCGCTCGAACTGATGCTCCGCAGGAGGAGACGA","10.80","9.57","32159","MTSSRLYGLAVGILSSATFGLIPLFTLPVSAKGASFELILFYRFFFAAIAIGILHRLSGGSFKVSRADIGPLVLLGFLYAGTALFLFHGYGYMASGVATTIHFLYPLFVTALMLLFFGERLSPVPLTAIFIALIGVGLLMGLTGGGDRVGLTGFVIVAISALCYALYIVFVNRSRIRIMPGRRLTFYVFVAAAGFCLINVLVRQGEVAPLPDAASWGNILLLALVPTVISNLALVVAVRNIGSTLTSALGAMEPLTSVLVGVWVFDEVLGASAIVGMGCILIAVGLIVFSEPLELMLRRRRR","367798 368868","TIGR ID: PG0333","conserved hypothetical protein","Inner membrane, Cytoplasm","Several weak hits to hypothetical proteins and integral membrane proteins using BLAST. Residues 8-281 are 23% similar to (AP000001) of Pyrococcus horikoshii. Residues 35-291 are 25% similar to (D90900) of Synechocystis sp. Residues 24-294 are 25% similar to integral membrane protein (AE006006) of Caulobacter crescentus.","
InterPro
IPR000620
Domain
Protein of unknown function DUF6, transmembrane
PF00892\"[14-141]T\"[162-289]TDUF6
noIPR
unintegrated
unintegrated
SSF103481\"[42-148]T\"[188-292]TSSF103481


","BeTs to 8 clades of COG0697COG name: Predicted permeasesFunctional Class: RThe phylogenetic pattern of COG0697 is A-tKYQVCEB-Huj---lINxNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 10:43:27 MDT 2001","","Thu Jun 14 10:43:27 MDT 2001","Thu Jun 14 10:43:27 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 10:43:27 MDT 2001","Thu Jun 14 10:43:27 MDT 2001","","","Wed Jun 20 10:51:11 MDT 2001","Wed Jun 20 10:50:43 MDT 2001","Thu Jun 14 10:43:27 MDT 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Feb 21 13:59:33 MST 2001","-53% similar to PDB:2B2F Ammonium Transporter Amt-1 from A.fulgidus (Native) (E_value = );-53% similar to PDB:2B2H Ammonium Transporter Amt-1 from A. fulgidus (AS) (E_value = );-53% similar to PDB:2B2I Ammonium Transporter Amt-1 from A. fulgidus (MA) (E_value = );-53% similar to PDB:2B2J Ammonium Transporter Amt-1 from A. fulgidus (Xe) (E_value = );","","","Residues 17 to 141 (E-value = 1.4e-06) place PG0308 in the DUF6 family which is described as Integral membrane protein DUF6 (PF00892)Residues 162 to 289 (E-value = 2.7e-15) place PG0308 in the DUF6 family which is described as Integral membrane protein DUF6 (PF00892)","Wed Jun 20 10:50:43 MDT 2001","34540168","","","","","","1","","5","PG0333" "PG0309","369841","368885","957","ATGGATGTCAATACGACTTATACGAAGGAGCTTTCCATCATCGTGCCGATCTATAATGAAGAAAGGGAACTTCCCGAGCTGGTGCGGCGGTTGAGTGCGGCGGCGGCTTCGATAACGGAGGACTACGAACTGATCTTTGTCAATGACGGCAGCCGCGATGGTTCGATGGAGCTATTGCGCAGCCTGTGCAAGGGTGATGACCGTTTCTTCTACATCAACCTGAGTCGCAACTTCGGTCATCAGATAGCCGTGTCGGCAGGATTAGACCATGTGAGGGGAAAGGCTACGGTGATCATCGACGGCGACTTGCAGGATCCGCCGGAATTGATACCGGAACTGTATGCGAAATACCGTGAGGGTTACGAAGTGGTCTATGCACAGCGGAAGCATCGCGAAGGCGAAACGTGGTTCAAGAAAGCGACGGCCAAAGGTTTCTACCGGACGATGCGCAAGATCACGTCTATCGATATGCCGCTGGATACGGGCGACTTCCGGCTGATCGACCGGAAGATCGTGCAGTGCCTGCGAGAGATGCCCGAGCAGAACAAGTTCCTGAGGGGACAAATCGCCTGGATGGGATTCCGCCAGACAGGGGTGCAGTTCGACAGAGACGAAAGGAAATACGGCCAAACGAACTATCCGCTCAGGAAGATGCTTGCCTTGGCCATCGACGGCATCACGGGATTTTCCAGCAGACCGCTTGAATGGGTGGCCCAATTAGGTGCCTGGGTTTCTTTGCTCTCCTTATTCGTGATCGTCTATGCCCTCATCTCGCACTTCCTGCTGGATAAGACGGTGAGCGGATGGACTTCCGTCATCGTAAGCTCCATGTTCTTGGGAGGAGTGCAGCTGATATGCCTTGGGGTGATCGGTACCTATATATCCAAGATCAATAAAAATATAGTCGCAAGGCCCCTGTACTTGGTGGCCGAAAGCAATATCGCAGCAGACGAACGG","7.90","1.84","36300","MDVNTTYTKELSIIVPIYNEERELPELVRRLSAAAASITEDYELIFVNDGSRDGSMELLRSLCKGDDRFFYINLSRNFGHQIAVSAGLDHVRGKATVIIDGDLQDPPELIPELYAKYREGYEVVYAQRKHREGETWFKKATAKGFYRTMRKITSIDMPLDTGDFRLIDRKIVQCLREMPEQNKFLRGQIAWMGFRQTGVQFDRDERKYGQTNYPLRKMLALAIDGITGFSSRPLEWVAQLGAWVSLLSLFVIVYALISHFLLDKTVSGWTSVIVSSMFLGGVQLICLGVIGTYISKINKNIVARPLYLVAESNIAADER","369841 368885","TIGR ID: PG0334","glycosyltransferase","Inner membrane, Cytoplasm","Strong similarity (47%) to sp034319YKCC, a hypothetical glycosyltransferase protein in Bacillus subtilis and to the same, spQ55487Y501 (45%) and spP74505YJ43 (44%) in Synechocystis PCC6803. Also strong identity to the glycosyltransferase protein in Streptomyces coelicolor A3(2) (38%) and to glycosyltransferase proteins in various other prokaryotes.","
InterPro
IPR001173
Domain
Glycosyl transferase, family 2
PF00535\"[12-176]TGlycos_transf_2
noIPR
unintegrated
unintegrated
G3DSA:3.90.550.10\"[11-129]TG3DSA:3.90.550.10
PTHR10859\"[17-311]TPTHR10859
SSF53448\"[11-181]TSSF53448


","BeTs to 12 clades of COG0463COG name: Glycosyltransferases involved in cell wall biogenesisFunctional Class: MThe phylogenetic pattern of COG0463 is AMTKYQVCEBRHujGPo---XNumber of proteins in this genome belonging to this COG is 8","No significant hit to the Blocks database.","Residues 217-309 are 45% similar to a (TRANSFERASE PROTEIN GLYCOSYLTRANSFERASE) protein domain (PD005262) which is seen in Y501_SYNY3.Residues 10-84 are 44% similar to a (PROTEIN TRANSFERASE GLYCOSYLTRANSFERASE PUTATIVE) protein domain (PD000196) which is seen in YKCC_BACSU.Residues 87-214 are 55% similar to a (PROTEIN TRANSFERASE GLYCOSYLTRANSFERASE) protein domain (PD001307) which is seen in YKCC_BACSU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Feb 21 14:14:01 MST 2001","Wed Jul 23 17:33:07 2008","Mon Apr 2 13:33:06 MDT 2001","","Wed Feb 21 14:14:01 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 10 to 296 share 24% identity with PG0285, a predicted glycosyltransferase.","Mon Apr 2 13:33:06 MDT 2001","Wed Jul 23 17:33:07 2008","No significant hits to the PDB database (E-value < E-10).","","","Residues 12 to 176 (E-value = 1.1e-33) place PG0309 in the Glycos_transf_2 family which is described as Glycosyl transferase (PF00535)","Mon Apr 2 13:33:06 MDT 2001","34540169","","","","","","1","","5","PG0334" "PG0310","370796","369897","900","TTGGAGACTCAGGATCATACGCTATACGTCCTCCTTGGTCCCACCGGTGTGGGCAAGACGGATCTGAGCCTCGACATCGCCGAACGTTTGGGCAGCCCGATCATCTCGGCCGACTCCCGACAGATATTTCGTGAACTGCCCATAGGAACAGCGGCACCCACTCCCGAACAGCGGGCGAAGGTGCCGCATCTTTTTGTCGGTACGCATAGCGTCAGGGACTATTATAGCGCGGGAATGTACGAGGTGGAAGTGCTCGAAGCTCTGAAAGAACTGTTCCGAAAGTATAGAGGGGTGCTCCTTACCGGCGGTTCGATGATGTATATCGATGCGGTTTGTCGGGGGATAGACGATATTCCCGACCCCTTTCCGGAGGTGAGGGAAGAGCTTTACGCCCGATACGCAGCGGAAGGATTGGATGGGATACTGGCACAGCTCCGGCTACTGGATCCCGATTACTACGCCAAGGTGGACAGACGGAACTATAAGCGAGTGATCCACGGTTTGGAGATATGCCTTTCGACCGGACGGCCGTTCTCCTCGTTCCACCGACATGAGGCCAAGGAGCGTCCGTTCCGAATCGTCAAGATCGGGCTTTACAGAGAACGCGAGGAACTTTGCAAACGGATAGACGCCCGTGTATTGGAAATGATGGAGCAAGGTCTGGAGGAAGAGGCTCGCGCCGTCTATCCCTTGCGCCATCTCAATGCACTCAATACGGTCGGCTACAAAGAAATGTTCGAATACTTCGACGGCTCGATCGATCGGGCAGAGGCCGTAAGGCGGATCCAACGCAACAGTCGCGTATATGCCCGCAAGCAAATGACATGGTTCAGACGCGACAGTACGATCCGCTGGTTCCATCCCGAAGCGGACAAAGGAACGGTCCTGACCCTTGTCACC","7.60","1.81","34662","LETQDHTLYVLLGPTGVGKTDLSLDIAERLGSPIISADSRQIFRELPIGTAAPTPEQRAKVPHLFVGTHSVRDYYSAGMYEVEVLEALKELFRKYRGVLLTGGSMMYIDAVCRGIDDIPDPFPEVREELYARYAAEGLDGILAQLRLLDPDYYAKVDRRNYKRVIHGLEICLSTGRPFSSFHRHEAKERPFRIVKIGLYREREELCKRIDARVLEMMEQGLEEEARAVYPLRHLNALNTVGYKEMFEYFDGSIDRAEAVRRIQRNSRVYARKQMTWFRRDSTIRWFHPEADKGTVLTLVT","370796 369897","In H. influenzae, this enzyme catalyzes the first step in the biosynthesis of the isopentenyl-modified adenine adjacent to the anticodon of several tRNA species.tRNA isopentenylpyrophosphate transferase catalyzes the first stepin the biosynthesis of 2-methylthio-N6-(delta(2)-isopentenyl)-adenosine (MS[2]I[6]A])adjacent to the anticodon of several tRNA species. Reaction: isopentenyl diphosphate + tRNA = pyrophosphate+ tRNA containing 6-isopentenyladenosine. Specific tRNAundermodification may be a switch to higher mutation frequency when cells are subject to environmental stresses other than treatment with mutagens. Potential homodimer. tRNA isopentenylpyrophosphate transferase isinduced by 2-aminopurine. TIGR ID: PG0335","tRNA delta-2 isopentenylpyrophosphate transferase (IPP transferase)","Cytoplasm","This protein is similar to CT766, a predicted tRNA isopentenylpyrophosphate transferase, and to BT4203.Numerous moderately significant hits in gapped BLAST to tRNA isopentenylpyrophosphate transferase miaA; e.g. residues 13-287 are 38% similar to AE001728 of Thermotoga maritima, residues 8-286 are 36% similar to AP001515 of Bacillus halodurans, residues 8-292 are 33% similar to AE000721 of Aquifex aeolicus.","
InterPro
IPR002627
Family
tRNA isopentenyltransferase
PTHR11088\"[39-286]TTRNA DELTA(2)-ISOPENTENYLPYROPHOSPHATE TRANSFERASE-RELATED
PF01715\"[40-289]TIPPT
TIGR00174\"[8-291]TmiaA: tRNA delta(2)-isopentenylpyrophosphat
InterPro
IPR011593
Domain
Isopentenyl transferase-like
PD005388\"[8-56]TMIAA_PORGI_Q7MAW8;
noIPR
unintegrated
unintegrated
PTHR11088:SF21\"[39-286]TTRNA DELTA(2)-ISOPENTENYLPYROPHOSPHATE TRANSFERASE


","BeTs to 12 clades of COG0324COG name: tRNA delta(2)-isopentenylpyrophosphate transferaseFunctional Class: JThe phylogenetic pattern of COG0324 is ----yqvcebrhuj--olinxNumber of proteins in this genome belonging to this COG is 2","***** PF01715 (IPP transferase) with a combined E-value of 2.5e-41. PF01715A 18-70 PF01715B 95-110 PF01715C 141-176 PF01715D 205-228 PF01715E 266-278","Residues 41-286 are 31% similar to a (TRANSFERASE TRNA) protein domain (PD004674) which is seen in MIAA_BACSU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Mon Jan 5 11:06:28 2004","Wed Mar 29 14:47:49 MST 2000","Mon Jan 5 11:06:28 2004","Wed Mar 14 16:04:16 MST 2001","Wed Mar 14 16:04:16 MST 2001","Wed Mar 14 16:04:16 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG0310 shows 30% similarity to PG0476, a tRNA delta-2 isopentenylpyrophosphate transferase (IPP transferase).","Wed Mar 14 16:05:46 MST 2001","Wed Mar 14 16:04:16 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 6 to 190 (E-value = 1.6e-05) place PG0310 in the IPT family which is described as Isopentenyl transferase (PF01745)Residues 40 to 289 (E-value = 3.4e-63) place PG0310 in the IPPT family which is described as IPP transferase (PF01715)","Mon Jan 5 11:06:28 2004","34540170","","","Connolly,D.M. and Winkler,M.E. 1991. Structure of Escherichia coli K-12 miaA and characterization of the mutator phenotype caused by miaA insertion mutations. J. Bacteriol. 173(5): 1711-1721. PubMed: 1999389.Connolly,D.M. and Winkler,M.E. 1989. Genetic and physiological relationships among the miaA gene, 2-methylthio-N6-(delta 2-isopentenyl)-adenosine tRNA modification, and spontaneous mutagenesis in Escherichia coli K-12. J. Bacteriol. 171(6): 3233-3246. PubMed: 2656644.","","Thu Apr 6 11:47:32 MDT 2000","1","","5","PG0335" "PG0311","371382","370816","567","ATGGTATTCAACTTTCTGATAGTTTCCGATGAGGTGGAAGATTTCCGCCGAGAGATAGCGATCGACTCCGAAGCTACCTTCCTCGACCTCCAAAATGCGATTCTGGACTCGGTGGGCTATTCGCACAGCGAGCTAACGTCTTTTTTCCTCTGCGATGAGGACTGGCACAAGGGGCAGGAGATTACGCTGATGGAGATGGACACGGCCTCGGATGAGGACTCGTATGTGATGGAGAATACACGCTTGGAAGAGTTCATCGAGGACGAACACCAACGTCTCGTCTTCGAATTCGACTTGATGACGGAGCGTTACTTCTTTATCGAAGTGATGGATATAGTACCGGGCAAATCGCTCTCGGAGCCTAAGCTCCTTACGTCGGAAGGATTGCCTCCGCAACAAAGCTCTCTGGACGATCTGATGGATCCGACTGCCATTCCAACCAAGCAAGCCCGGGGATTGGATCTGGAAGAAGACTTCTTCGGCGACAGCGAGTACAACGAGGACGAGATAGACCGCGAGGGGTTCGAGGGCTTCGATGAGATAACATCCGACCTGTCCGATAACTAT","3.70","-39.29","21897","MVFNFLIVSDEVEDFRREIAIDSEATFLDLQNAILDSVGYSHSELTSFFLCDEDWHKGQEITLMEMDTASDEDSYVMENTRLEEFIEDEHQRLVFEFDLMTERYFFIEVMDIVPGKSLSEPKLLTSEGLPPQQSSLDDLMDPTAIPTKQARGLDLEEDFFGDSEYNEDEIDREGFEGFDEITSDLSDNY","371382 370816","TIGR ID: PG0336","conserved hypothetical protein","Cytoplasm","Its nearest neighbor in the NR database is gi:53712197 from Bacteroides fragilis YCH46.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Mar 1 16:03:24 2005","Tue Mar 1 16:03:24 2005","Thu Feb 15 15:18:28 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 15 15:18:28 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540171","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Tue Mar 1 16:03:24 2005","","1","","5","PG0336" "PG0312","371670","375194","3525","ATGACAGAACAAAACGAGAAACCGTACAACGGTACCTACTACACGCTGGAGGACAAACATTTCTGGGCAGCTTTCTTCAATCTGGCACGTCACAACGCCTATATTACCCTCGCCCACATCGACAGGCAGCTCGCCTACAGCAAGGCCGATATAACCAACGATGAGGATATACTCTTCTTCAAGGGCCAATGGAAAAACCTCGACAACGATCTGGAGAGGAAAGCTCGGCTGAGAAGTTTGATCCTGAAGCATTTCTCCTTTTTGGAAGGAGCCGCATACGGCAAGAAACTCTTCGAAAGCCAATCTTCCGGAAACAAATCCTCCAAGAAGAAAGAACTCACAAAAAAAGAAAAGGAAGAACTGCAAGCCAACGCGCTCTCCTTGGACAATCTGAAGAGCATCCTGTTCGACTTTCTGCAAAAGCTCAAGGATTTCAGGAATTACTACTCCCACTATCGACATCCCGAATCTTCGGAATTGCCCTTGTTCGATGGAAACATGCTTCAGAGACTGTACAACGTCTTCGATGTGAGTGTGCAACGGGTGAAAAGAGATCACGAGCACAACGACAAGGTCGATCCTCACCGCCACTTCAACCACCTTGTCAGGAAAGGCAAGAAAGATAAGTACGGCAATAACGACAATCCCTTCTTCAAGCACCATTTTGTCGATAGAGAGGAGAAAGTCACGGAAGCCGGACTGCTGTTTTTCGTCTCCCTCTTTCTTGAAAAAAGGGATGCCATCTGGATGCAAAAGAAGATCCGAGGCTTCAAGGGCGGCACCGAAGCCTACCAGCAGATGACCAATGAGGTCTTCTGCCGGAGCCGGATCTCCTTGCCGAAGCTCAAACTGGAGAGCCTGCGCACGGACGACTGGATGCTGCTCGATATGCTGAACGAACTGGTTCGCTGCCCCAAGTCGTTGTACGATCGTCTTCGCGAAGAGGATAGAGCGCGTTTCCGAGTACCCGTCGATATTCTGTCCGATGAGGACGATACGGACGGTACGGAAGAAGACCCCTTCAAAAACACGCTGGTCAGGCATCAGGATCGCTTCCCCTACTTCGCCTTGCGATACTTCGATCTGAAGAAAGTCTTCACTTCCCTCCGCTTCCATATAGATTTGGGCACCTACCACTTCGCCATATACAAGAAGAACATCGGCGAGCAGCCGGAAGACCGCCATCTGACGCGCAACCTGTACGGCTTCGGCCGAATACAGGATTTCGCCGAGGAGCATAGACCCGAAGAATGGAAGCGTTTGGTGCGGGATTTGGACTACTTCGAGACCGGCGACAAGCCCTATATCACCCAAACCACTCCGCACTATCATATCGAGAAAGGAAAGATCGGGCTGAGGTTCGTGCCGGAAGGGCAGCTTCTTTGGCCGTCGCCGGAGGTAGGAGCAACCCGAACGGGACGAAGCAAATACGCCCAAGACAAACGGTTCACGGCAGAAGCCTTCCTGAGCGTACATGAGCTGATGCCCATGATGTTCTATTACTTCCTGCTGAGAGAAAAGTATTCCGAGGAGGCAAGTGCCGAGAAGGTGCAAGGAAGAATAAAGAGGGTGATAGAGGATGTGTACGCTGTCTACGATGCTTTCGCCCGAGACGAAATCAATACGCGCGACGAGTTGGATGCCTGTTTGGCGGACAAGGGTATTCGGCGAGGACATCTCCCCAGGCAAATGATCGCCATATTGTCCCAAGAGCATAAGGATATGGAGGAGAAAGTCCGCAAGAAACTTCAGGAAATGATAGCGGATACGGATCATCGTCTGGATATGCTGGATCGGCAGACCGACCGAAAGATCAGGATCGGCAGAAAGAATGCCGGCCTGCCGAAGTCGGGTGTCATAGCCGACTGGCTGGTACGGGATATGATGCGCTTTCAGCCCGTGGCGAAAGACACGAGTGGCAAGCCTCTGAACAATAGCAAGGCCAACAGCACCGAATACCGGATGCTACAGCGCGCCCTCGCCCTTTTCGGCGGAGAGAAAGAGCGTCTGACACCGTATTTCCGCCAGATGAATCTGACGGGAGGGAACAATCCCCATCCTTTCCTGCACGAAACCCGGTGGGAGAGCCATACCAATATCCTGTCCTTCTATCGCAGCTATCTGAAAGCAAGAAAGGCTTTTCTCCAAAGCATAGGACGAAGCGATCGGGAGGAGAACCACCGCTTCCTCCTGCTCAAGGAACCCAAAACCGATCGGCAGACATTAGTGGCCGGCTGGAAGAGCGAATTTCATCTGCCACGCGGGATTTTTACCGAAGCGGTCAGAGACTGCCTGATAGAGATGGGGTACGATGAAGTCGGGTCATACAAGGAAGTCGGATTCATGGCCAAAGCCGTTCCGCTATATTTCGAGCGGGCTTGTAAAGATCGGGTACAGCCTTTCTATGACTACCCCTTCAATGTAGGCAACAGCCTCAAGCCCAAGAAAGGACGCTTCCTGAGCAAAGAAAAGCGAGCCGAAGAGTGGGAGAGCGGTAAGGAGCGGTTCCGAGACCTTGAGGCTTGGTCGCACAGTGCTGCTCGTCGGATAGAGGATGCTTTTGTCGGAATCGAGTATGCAAGTTGGGAAAATAAGAAGAAAATCGAGCAGCTGTTGCAGGATCTCTCCCTTTGGGAAACCTTTGAGAGCAAGCTGAAAGTCAAGGCAGACAAGATAAATATTGCCAAACTGAAAAAGGAAATACTCGAAGCCAAAGAACACCCCTATCACGACTTCAAGTCGTGGCAGAAGTTCGAGCGCGAACTGCGCCTTGTCAAGAATCAGGATATTATCACTTGGATGATGTGCAGGGATCTCATGGAAGAGAACAAGGTGGAGGGATTGGATACCGGTACTCTCTACCTGAAAGATATTCGGACCGACGTCCAAGAGCAGGGGAGCCTCAATGTGCTGAACCACGTGAAGCCGATGCGCTTGCCCGTGGTCGTGTACAGAGCCGACAGCCGAGGCCATGTACACAAGGAGGAGGCTCCTCTGGCGACGGTCTATATCGAAGAAAGGGACACCAAGCTGCTGAAGCAGGGCAATTTCAAATCCTTCGTCAAGGATCGCCGGCTCAACGGCCTTTTCTCTTTCGTCGATACCGGCGCACTCGCGATGGAGCAGTACCCGATCAGCAAGCTCAGGGTGGAGTACGAGCTGGCTAAGTATCAGACGGCAAGGGTCTGTGCCTTCGAGCAGACGCTGGAGCTGGAAGAGAGCCTGCTGACCCGATATCCTCACTTGCCGGATGAGAGCTTCAGAGAGATGCTCGAAAGCTGGTCGGATCCTCTCTTGGACAAGTGGCCGGATCTGCAAAGGGAAGTCCGGCTTCTGATCGCTGTGCGCAATGCCTTCTCGCACAATCAGTATCCCATGTACGATGAGACCATCTTTTCGTCCATCCGGAAGTACGACCCCTCTTCCCTCGATGCCATAGAGGAAAGGATGGGGCTGAACATCGCGCACCGGTTGAGCGAGGAAGTGAAGCTGGCAAAAGAAATGGTAGAACGAATCATACAAGCA","9.20","19.00","139004","MTEQNEKPYNGTYYTLEDKHFWAAFFNLARHNAYITLAHIDRQLAYSKADITNDEDILFFKGQWKNLDNDLERKARLRSLILKHFSFLEGAAYGKKLFESQSSGNKSSKKKELTKKEKEELQANALSLDNLKSILFDFLQKLKDFRNYYSHYRHPESSELPLFDGNMLQRLYNVFDVSVQRVKRDHEHNDKVDPHRHFNHLVRKGKKDKYGNNDNPFFKHHFVDREEKVTEAGLLFFVSLFLEKRDAIWMQKKIRGFKGGTEAYQQMTNEVFCRSRISLPKLKLESLRTDDWMLLDMLNELVRCPKSLYDRLREEDRARFRVPVDILSDEDDTDGTEEDPFKNTLVRHQDRFPYFALRYFDLKKVFTSLRFHIDLGTYHFAIYKKNIGEQPEDRHLTRNLYGFGRIQDFAEEHRPEEWKRLVRDLDYFETGDKPYITQTTPHYHIEKGKIGLRFVPEGQLLWPSPEVGATRTGRSKYAQDKRFTAEAFLSVHELMPMMFYYFLLREKYSEEASAEKVQGRIKRVIEDVYAVYDAFARDEINTRDELDACLADKGIRRGHLPRQMIAILSQEHKDMEEKVRKKLQEMIADTDHRLDMLDRQTDRKIRIGRKNAGLPKSGVIADWLVRDMMRFQPVAKDTSGKPLNNSKANSTEYRMLQRALALFGGEKERLTPYFRQMNLTGGNNPHPFLHETRWESHTNILSFYRSYLKARKAFLQSIGRSDREENHRFLLLKEPKTDRQTLVAGWKSEFHLPRGIFTEAVRDCLIEMGYDEVGSYKEVGFMAKAVPLYFERACKDRVQPFYDYPFNVGNSLKPKKGRFLSKEKRAEEWESGKERFRDLEAWSHSAARRIEDAFVGIEYASWENKKKIEQLLQDLSLWETFESKLKVKADKINIAKLKKEILEAKEHPYHDFKSWQKFERELRLVKNQDIITWMMCRDLMEENKVEGLDTGTLYLKDIRTDVQEQGSLNVLNHVKPMRLPVVVYRADSRGHVHKEEAPLATVYIEERDTKLLKQGNFKSFVKDRRLNGLFSFVDTGALAMEQYPISKLRVEYELAKYQTARVCAFEQTLELEESLLTRYPHLPDESFREMLESWSDPLLDKWPDLQREVRLLIAVRNAFSHNQYPMYDETIFSSIRKYDPSSLDAIEERMGLNIAHRLSEEVKLAKEMVERIIQA","371670 375194","TIGR ID: PG0338","conserved hypothetical protein","Cytoplasm","This sequence corresponds to gi:34396485 in Genbank.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Mar 1 16:06:48 2005","Tue Mar 1 16:06:48 2005","Wed Feb 21 14:17:56 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 224-1125 share 23% similarity with PG1041, a hypothetical protein.","Mon Jun 4 10:42:56 MDT 2001","Wed Feb 21 14:17:56 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Apr 5 18:27:56 MDT 2001","34540173","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Tue Mar 1 16:06:48 2005","","1","","5","PG0338" "PG0313","375202","375744","543","ATGATGACGATGACTATTTGTTGGACACCGATATGCGTACAGCTGATCAAGCTATCGGGTATCTTCATTGCCGCATATCTGGCGTATCGCTATGCCGTGCACAAGCTCTCCAAAGAGAGCATAGAGAATATCGAACGCTGCAAATACCAAGCCGTGCTGGAGGCGCACCGGAGTTTCTACAAGCTGCTGCGCTTCACCACCGATACGGAGAATGCCGATAGCATATTGGTATGGCAGAAGGCCAAAGGAGGCGGAGCGAAAACCTATTATTTCAGGCCGGCCTGCATCCGTGGATTCCTGTCCGAACTGACGGCCGAATTTTATAAGAATGGGAACGGTATTTTCTTGTCTAAAGAGATTATTTCCCGTATCTTTGAGTATAGGAGTATCGTTTACGGCCTTTTGCTTTCGGAGAGGCAGAACTCGGATGAGAGGGTTGTGATGAACAAGCCCGAAACGGCCGAACGGATGATCAGCATTCATCAGGAGCTTACCCAAACCGTTAGAGAAGCCATCGCACTGAAGAAGCGAACGTTGAACTTT","10.00","8.53","20999","MMTMTICWTPICVQLIKLSGIFIAAYLAYRYAVHKLSKESIENIERCKYQAVLEAHRSFYKLLRFTTDTENADSILVWQKAKGGGAKTYYFRPACIRGFLSELTAEFYKNGNGIFLSKEIISRIFEYRSIVYGLLLSERQNSDERVVMNKPETAERMISIHQELTQTVREAIALKKRTLNF","375202 375744","TIGR ID: PG0339","hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
noIPR
unintegrated
unintegrated
signalp\"[1-27]?signal-peptide
tmhmm\"[15-33]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Feb 15 15:20:37 MST 2001","","Thu Feb 15 15:20:37 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 15 15:20:37 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540174","","","","","","1","","5","PG0339" "PG0313.1","376206","376493","288","TTGACCTTACCTCCAGTTGGATCTACCCTCTATTCGAAGGGTACACACAACTATAAAGGTTTGTTCAAGGAATGTGCTACCGTTGGATCTACCCTCTATTCGAAGGGTACACACAACGATGCGGACAACGTCCCTGTACTCCGTCTTGTTGGATCTACCCTCTATTCGAAGGGTACACACAACAGTCGATTAGCTCGTCCGCCGACACGTCTTGTTGGATCTACCCTCTATTCGAAGGGTACACACAACATGATTCTTGATTGGTGGCTTGGGCGTTGGAATGTGCAG","","","10586","LTLPPVGSTLYSKGTHNYKGLFKECATVGSTLYSKGTHNDADNVPVLRLVGSTLYSKGTHNSRLARPPTRLVGSTLYSKGTHNMILDWWLGRWNVQ","","TIGR ID: PG0340","hypothetical protein","Extracellular","No hit found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Thu Feb 15 15:22:02 MST 2001","","Thu Feb 15 15:22:02 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540175","","","","","","1","","","PG0340" "PG0314","378452","377274","1179","ATGCGTAGTGGCTTTGCCACACGTGCCATCCATGGAGGCGCTATCGAGAACGCCTTCGGCTGCTTAGCCACTCCCATTTACCAAACATCGACTTTCGTTTTTGACACTGCCGAACAGGGAGGCCGCCGCTTTGCCGGAGAGGAAGACGGATACATCTATACCCGTCTGGGCAACCCCAACTGCACCCAAGTGGAAGAGAAACTGGCCATGCTCGAAGGCGGAGAAGCCGCCGCATCGGCCTCATCCGGTATCGGAGCCATCAGCTCTGCCATCTGGGTATGCGTGAAGGCCGGCGACCATATCGTAGCCGGCAAGACGCTCTACGGCTGCACCTTCGCCTTCCTCACCCACGGACTGAGCCGCTACGGTGTGGAAGTCACCCTCGTGGATACCCGCCATCCGGAAGAGGTGGAGGCCGCCATTCGCCCGAATACGAAGCTCGTCTATCTGGAGACTCCGGCCAACCCCAATATGTACCTGACCGACATCAAGGCAGTCTGCGACATCGCTCATAAGCACGAAGGCGTACGCGTCATGGTGGACAATACCTACTGCACGCCCTATATCTGCCGTCCGCTGGAGCTGGGTGCCGACATCGTGGTACACAGCGCGACCAAGTACCTGAACGGACATGGCGACGTCATCGCCGGATTCGTCGTAGGTAAAGAGGACTACATCAAGGAGGTGAAGCTCGTCGGCGTCAAGGACCTCACGGGGGCCAATATGAGTCCGTTCGATGCTTATCTGATCAGCCGCGGCATGAAGACGCTGCAGATACGTATGGAGCAGCACTGCCGCAATGCTCAGACCGTAGCCGAATTTCTCGAAAAGCATCCGGCCGTAGAAGCAGTTTATTTCCCCGGACTTCCGAGCTTCCCCCAATACGAATTGGCCAAGAAGCAGATGGCACTGCCCGGAGCCATGATCGCCTTCGAAGTGAAGGGCGGTTGCGAAGCCGGTAAGAAGCTGATGAACAACCTGCACCTCTGCTCCCTCGCCGTGAGCTTGGGCGATACGGAAACCCTCATCCAGCATCCGGCCAGCATGACCCACTCGCCCTACACACCCGAAGAGCGTGCTGCCAGCGACATATCCGAAGGACTGGTACGCCTGTCCGTGGGTCTGGAGAACGTGGAGGACATCATCGCCGACCTCAAGCACGGTCTGGACAGCCTGATC","5.80","-10.08","42505","MRSGFATRAIHGGAIENAFGCLATPIYQTSTFVFDTAEQGGRRFAGEEDGYIYTRLGNPNCTQVEEKLAMLEGGEAAASASSGIGAISSAIWVCVKAGDHIVAGKTLYGCTFAFLTHGLSRYGVEVTLVDTRHPEEVEAAIRPNTKLVYLETPANPNMYLTDIKAVCDIAHKHEGVRVMVDNTYCTPYICRPLELGADIVVHSATKYLNGHGDVIAGFVVGKEDYIKEVKLVGVKDLTGANMSPFDAYLISRGMKTLQIRMEQHCRNAQTVAEFLEKHPAVEAVYFPGLPSFPQYELAKKQMALPGAMIAFEVKGGCEAGKKLMNNLHLCSLAVSLGDTETLIQHPASMTHSPYTPEERAASDISEGLVRLSVGLENVEDIIADLKHGLDSLI","378470 377274","TIGR ID: PG0343","cystathionine beta-lyase/cystathionine gamma-synthase","Cytoplasm","Shares strong similarity (54%) at residues 4-389 in sp|P13254|MEGL_PSEPU, a methionine gamma-lyase (L-methioninase)in Pseudomonas putida. Also has very strong similarity (54%) at residues 3-391 in gb|AAB03240.1|(L43133), a L-methionine-alpha-deamino-gamma-mercaptomethane-lyaseof Pseudomonas putida. Shows 50% similarity at residues 6-393 with emb|CAA04124.1| (AJ000486), a methionine gamma-lyase in Trichomonas vaginalis. Also shows very strong identity to methionine gamma-lyases in various other prokaryotes.","
InterPro
IPR000277
Family
Cys/Met metabolism pyridoxal-phosphate-dependent enzymes
PTHR11808\"[91-392]TCys_Met_Meta_PP
PF01053\"[6-390]TCys_Met_Meta_PP
PS00868\"[198-212]TCYS_MET_METAB_PP
InterPro
IPR006237
Family
Methionine gamma-lyase
TIGR01328\"[2-392]Tmet_gam_lyase
InterPro
IPR015421
Domain
Pyridoxal phosphate-dependent transferase, major region, subdomain 1
G3DSA:3.40.640.10\"[4-257]TPyrdxlP-dep_Trfase_major_sub1
InterPro
IPR015422
Domain
Pyridoxal phosphate-dependent transferase, major region, subdomain 2
G3DSA:3.90.1150.10\"[258-393]TPyrdxlP-dep_Trfase_major_sub2
InterPro
IPR015424
Domain
Pyridoxal phosphate-dependent transferase, major region
SSF53383\"[4-392]TPyrdxlP-dep_Trfase_major
noIPR
unintegrated
unintegrated
PIRSF001434\"[4-393]TCGS
PTHR11808:SF16\"[91-392]TPTHR11808:SF16


","BeTs to 8 clades of COG0626COG name: Cystathionine beta-lyases/cystathionine gamma-synthasesFunctional Class: EThe phylogenetic pattern of COG0626 is ---kY-VcEBRHuj-------Number of proteins in this genome belonging to this COG is 1","***** IPB000277 (Cys/Met metabolism pyridoxal-phosphate-dependent enzymes) with a combined E-value of 7.2e-107. IPB000277A 53-84 IPB000277B 143-176 IPB000277C 181-216 IPB000277D 239-281 IPB000277E 330-342 IPB000277F 368-385","Residues 7-389 are 54% similar to a (PYRIDOXAL PHOSPHATE AMINOTRANSFERASE TRANSFERASE PROTEIN) protein domain (PD000087) which is seen in MEGL_PSEPU.","","Thu Jun 14 10:43:49 MDT 2001","","Thu Jun 14 10:43:49 MDT 2001","Thu Jun 14 10:43:49 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 10:43:49 MDT 2001","Thu Jun 14 10:43:49 MDT 2001","","","Wed Feb 21 15:03:29 MST 2001","Wed Jun 20 11:23:19 MDT 2001","Fri Mar 9 15:27:51 MST 2001","Wed Jun 20 11:20:12 MDT 2001","Wed Jun 20 11:20:12 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Feb 21 14:59:25 MST 2001","-74% similar to PDB:1Y4I Crystal structure of Citrobacter Freundii L-methionine-lyase (E_value = 8.0E_127);-71% similar to PDB:1GC0 CRYSTAL STRUCTURE OF THE PYRIDOXAL-5'-PHOSPHATE DEPENDENT L-METHIONINE GAMMA-LYASE FROM PSEUDOMONAS PUTIDA (E_value = 5.0E_121);-71% similar to PDB:1GC2 CRYSTAL STRUCTURE OF THE PYRIDOXAL-5'-PHOSPHATE DEPENDENT L-METHIONINE GAMMA-LYASE FROM PSEUDOMONAS PUTIDA (E_value = 5.0E_121);-71% similar to PDB:1PG8 Crystal Structure of L-methionine alpha-, gamma-lyase (E_value = 5.0E_121);-71% similar to PDB:1UKJ Detailed structure of L-Methionine-Lyase from Pseudomonas putida (E_value = 5.0E_121);","","","Residues 6 to 390 (E-value = 2.5e-225) place PG0314 in the Cys_Met_Meta_PP family which is described as Cys/Met metabolism PLP-dependent enzyme (PF01053)","Wed Jun 20 11:20:12 MDT 2001","34540176","","","","","","1","","","PG0343" "PG0315","380102","378636","1467","ATGCGAAAGAAACGCTCCAATCCCTACTACAAAGTCAGCAGGCGGAAGTTCAGCAAACGAAATTCCGGACGCAGATATTCGAGAAAGAGGAGAAGAAACGGACGGCGACGAGGGCTGATGATCAGCCTGCTCCTCCTTGTCGCCCTCGGTATCTGGATAGCCAAGCGATACAGGGCTTGGTTCGTTTCTCCGGCCGAAGTCGCCTACACCGTACCGCATACGATAGACAGGCTCACCCTGACACCGGGTGAGGATTTCCTTACCCAAAGGACGGTCAGCTGGCGGTGCGACACCCTGCCGCAAGACTCTTGGCTGGACTATCGCTCTCCGGACGGAGCGGATGCAGATACCCTGCTGATCTCGCTGCCGGCCGAGGGAAAAGAAGTCGTCACCCGTGCCGGACGCAACTACTATTACCACGCTAAGATAAACGGACTCAAGCCCGGCCGCACCTATACCTACAGGGTCAAGACGGGAGAGCAGACATCGCCCTGGTACCGATTCTCCATTCCCGACAGTTCGGCTGCTACCGACTTCATCTATATCGGGGACGTTCAGGATCCGGGCAACGGAGGCAGTCAGGCTCTGCTCCAACGACTGCGCACCCTGCATCCCAACCCCGATTTTCTGGCTTTGGGTGGCGATCAGATCGAAGGCCCCACGGATTTCTATTGGGAAGTATGGCATCGTGTCATAGGCGACTGGACGGCATCGACACCCGTCATCGCCGCTACCGGCAACCACGAGTATATCAAAGGACTGAAAAGACAGCTCGATCCCCGTTGGGTACCTCAGTACAACTATCCGGCCAATGGTCCCAAAGGCTTCGAGCGGCGTTCGTACTACATAGACTTCCCCCATATGCGGCTCATCGTCATGGACACCAACGACATCCAATGGCCGGCATCCGTATTCAACCACCGCACGTGGTTGAAAAACGCACTCGAAACCACCGTACAGCCGTGGAAGGTGGTCATGTTCCACCACGGAGTGTATTCGGTGCGGCAGGGACGCATGAACCCGATCATCCGCTACGGCTTCCGCTCCATTCTGGAGGAAGGCGGTGCCGACCTCGTCCTGCAAGGACACGATCATGCCTACTCCCGTATCACCACCAAGACGGAGTCCGGCACGAAGACGACACCCGTATATATCATCAGCAGCGCATCGCCCAAGCACTACCGCAACGGATTCTCCGAGCAGCACGACAGGATCGGCTCCGGCCTCTACCTCTATCAGACCATCCACGTCACGCAGGGAGAGATCCGCTACCGCTCCACCACCTTCGACAATCGCCCGTACGACGACCTGCACCTGAAGAAGCAGGGAGGCCGAACCACAGTCAAGGACAATGCCGAGGACTGGAAAGAGATCTTCGCTTTCGACAACTTTGCCGACAGCAAAAAAGGCCGTAAAAAGCGTGCCGACTATCGGCAGGCAGCCCAAGAACGAGCAGCCGGACATCGG","10.80","31.82","56599","MRKKRSNPYYKVSRRKFSKRNSGRRYSRKRRRNGRRRGLMISLLLLVALGIWIAKRYRAWFVSPAEVAYTVPHTIDRLTLTPGEDFLTQRTVSWRCDTLPQDSWLDYRSPDGADADTLLISLPAEGKEVVTRAGRNYYYHAKINGLKPGRTYTYRVKTGEQTSPWYRFSIPDSSAATDFIYIGDVQDPGNGGSQALLQRLRTLHPNPDFLALGGDQIEGPTDFYWEVWHRVIGDWTASTPVIAATGNHEYIKGLKRQLDPRWVPQYNYPANGPKGFERRSYYIDFPHMRLIVMDTNDIQWPASVFNHRTWLKNALETTVQPWKVVMFHHGVYSVRQGRMNPIIRYGFRSILEEGGADLVLQGHDHAYSRITTKTESGTKTTPVYIISSASPKHYRNGFSEQHDRIGSGLYLYQTIHVTQGEIRYRSTTFDNRPYDDLHLKKQGGRTTVKDNAEDWKEIFAFDNFADSKKGRKKRADYRQAAQERAAGHR","380408 378636 [Bad Olap 417 301 0]","TIGR ID: PG0344","conserved hypothetical protein","Extracellular","Three very weak hits to various proteins using gapped BLAST. Residues 139-369 are 23% similar to putative purple acid phosphatase (AC012395) of Arabidopsis thaliana. Residues 225-369 are 23% similar to phytase (AF272346) of Glycine max. Residues 137-418 are 21% similar to (AL110479), an uncharacterized protein, of Caenorhabditis elegans.","
InterPro
IPR004843
Domain
Metallophosphoesterase
PF00149\"[177-367]TMetallophos
InterPro
IPR008963
Domain
Purple acid phosphatase, N-terminal
SSF49363\"[54-172]TPurple_Pase_N
noIPR
unintegrated
unintegrated
G3DSA:3.60.21.10\"[172-386]TG3DSA:3.60.21.10
PTHR22953\"[169-369]TPTHR22953
SSF56300\"[170-442]TSSF56300


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 10:44:08 MDT 2001","","Thu Jun 14 10:44:08 MDT 2001","Thu Jun 14 10:44:08 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 10:44:08 MDT 2001","Thu Jun 14 10:44:08 MDT 2001","","","Wed Jun 20 11:41:36 MDT 2001","Wed Jun 20 11:41:36 MDT 2001","Thu Feb 15 15:24:33 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 15 15:24:33 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 177 to 367 (E-value = 4.4e-12) place PG0315 in the Metallophos family which is described as Calcineurin-like phosphoesterase (PF00149)","Wed Jun 20 11:41:36 MDT 2001","34540177","","","","","","1","","","PG0344" "PG0316","380698","380108","591","ATGAACAAATCGCTTATAATTCTTATCTATACCCTCGTTTGGGTTTTGCTCATCGTCTTGCAAAGTCTGGCATTGGAGAGCGCCAACCCCGGCACCCCCTCCTTTTGGAATACGCCCTCCGCTTATTATTCCGTATGGATCGTTGATGCCTATATCATAGCCCTGTACTATATCAATTATTTTCTGATAGCCCCATTCATGATCAAGAGGCACCTCTTTCGTCCCTATATCGTGCTGTCGCTGGCCTTGGGCGGAATAGGCATGTTGCTTCCCGTCGTCTTCCACCACGCTTGGCAATGGACTGTACCGGGCACGTCCGAAGGACAGATGCCTCTTTACGGGGAAGGCTTCATCGCCTCCATAGCGGCCATAGCCGTAGGGCTGTCCGTCCGCGGAGTCCGCGAGTGGGTGCGTCTGGCTCGTCGGAATACCAATCTGGAGATAGCACTCAAGAACAAGTCCATCGCATACGATCGTGCCGAAGCGCGGCTGCGTTCTTTGGAACAGCCGGTTTCTTTCCACAACCCCGGCACGGGAGCGAAAGCGGAAAACGCACCTTCCTCTACTCCTGTCAGTCCACAAACAAACGAA","10.30","4.95","21917","MNKSLIILIYTLVWVLLIVLQSLALESANPGTPSFWNTPSAYYSVWIVDAYIIALYYINYFLIAPFMIKRHLFRPYIVLSLALGGIGMLLPVVFHHAWQWTVPGTSEGQMPLYGEGFIASIAAIAVGLSVRGVREWVRLARRNTNLEIALKNKSIAYDRAEARLRSLEQPVSFHNPGTGAKAENAPSSTPVSPQTNE","380698 380108 [Shorter 416 301 99]","TIGR ID: PG0345","hypothetical protein","Inner membrane, Cytoplasm","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-24]?signal-peptide
tmhmm\"[5-25]?\"[44-64]?\"[76-94]?\"[113-133]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Feb 15 15:26:42 MST 2001","","Thu Feb 15 15:26:42 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 15 15:26:42 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540178","","","","","","1","","","PG0345" "PG0317","380117","380713","597","TTGTGGACTGACAGGAGTAGAGGAAGGTGCGTTTTCCGCTTTCGCTCCCGTGCCGGGGTTGTGGAAAGAAACCGGCTGTTCCAAAGAACGCAGCCGCGCTTCGGCACGATCGTATGCGATGGACTTGTTCTTGAGTGCTATCTCCAGATTGGTATTCCGACGAGCCAGACGCACCCACTCGCGGACTCCGCGGACGGACAGCCCTACGGCTATGGCCGCTATGGAGGCGATGAAGCCTTCCCCGTAAAGAGGCATCTGTCCTTCGGACGTGCCCGGTACAGTCCATTGCCAAGCGTGGTGGAAGACGACGGGAAGCAACATGCCTATTCCGCCCAAGGCCAGCGACAGCACGATATAGGGACGAAAGAGGTGCCTCTTGATCATGAATGGGGCTATCAGAAAATAATTGATATAGTACAGGGCTATGATATAGGCATCAACGATCCATACGGAATAATAAGCGGAGGGCGTATTCCAAAAGGAGGGGGTGCCGGGGTTGGCGCTCTCCAATGCCAGACTTTGCAAGACGATGAGCAAAACCCAAACGAGGGTATAGATAAGAATTATAAGCGATTTGTTCATATTCTAATTGAGGCT","7.50","1.25","22204","LWTDRSRGRCVFRFRSRAGVVERNRLFQRTQPRFGTIVCDGLVLECYLQIGIPTSQTHPLADSADGQPYGYGRYGGDEAFPVKRHLSFGRARYSPLPSVVEDDGKQHAYSAQGQRQHDIGTKEVPLDHEWGYQKIIDIVQGYDIGINDPYGIISGGRIPKGGGAGVGALQCQTLQDDEQNPNEGIDKNYKRFVHILIEA","380117 380713 [Bad Olap 417 582 0]","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No hit found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG0318","380799","381401","603","ATGGAAATAAAAAAGGCGGCATTTGTAATCAGTAATACCGATGTGCGCAAATGTCCTGATACGAGGCTCCCCGAATATGCTTTCATCGGCCGTTCGAATGTGGGCAAATCCTCTCTGATCAATATGCTTACCGGCCAAAAGGGACTGGCCATGACCTCCCAAAAGCCGGGCAAAACGCAGCTGATCAACCATTTTATCATCGACGATTCGTGGTATCTGGTCGATTTGCCCGGCTACGGATATGCCCGTTTGGGTGCGTCCAACAGGGAATCCTTGCGCAGGATCATCGAGACGTACATCCTCTGTCGCGAGCAGCTTTCCAGTCTCTTTGTCCTGATCGATTGCAGGCATGAACCGCAGAAGATCGACTTGGAGTTTCTCCAATGGCTGGGTGAGAACGGGATTCCGTTCAGCATCGTATTCACCAAGGCGGACAAGCTCTCGTTCAGCCGATTAAAAGAGAATACGGAGGCTTACAAGCAAAAACTGCTGGAGACATGGGAGGAACTTCCTCCGGTATTTATTACCTCTTCCGAAAAGAAAACTGGCAAGGAAGAATTGCTGGATTATATCGACTCGATCAATCAAGAATTAGCTACGAAA","7.30","0.35","23014","MEIKKAAFVISNTDVRKCPDTRLPEYAFIGRSNVGKSSLINMLTGQKGLAMTSQKPGKTQLINHFIIDDSWYLVDLPGYGYARLGASNRESLRRIIETYILCREQLSSLFVLIDCRHEPQKIDLEFLQWLGENGIPFSIVFTKADKLSFSRLKENTEAYKQKLLETWEELPPVFITSSEKKTGKEELLDYIDSINQELATK","380799 381401","TIGR ID: PG0346","GTP-binding protein (GTPase)","Cytoplasm","Shares 42% identity at residues 2 to 188 with pir||T48507, a probable GTP-binding protein in Arabidopsis thaliana. Also shows 43% identity at residues 1 to 186 to pir||I40422, a conserved hypothetical protein ysxC in Bacillus subtilis and 43% identity to emb|CAA53985.1| (X76424), orfX in Bacillus subtilis at the same location. Shares 41% identity with gb|AAK05250.1|AE006347_8, a GTP-binding protein in Lactococcus lactis subsp. lactis at residues 10 to 191. Shares 40% identity at residues 1 to 186 with dbj|BAB06768.1|, a GTP-binding protein in Bacillus halodurans. Also shows stong identity to other eukaryotic and prokaryotic GTP-binding proteins.","
InterPro
IPR002917
Domain
GTP-binding protein, HSR1-related
PF01926\"[24-145]TMMR_HSR1
InterPro
IPR005289
Domain
GTP-binding
TIGR00650\"[29-78]TMG442
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[1-194]TG3DSA:3.40.50.300
PTHR11649\"[18-197]TPTHR11649
PTHR11649:SF13\"[18-197]TPTHR11649:SF13
SSF52540\"[1-197]TSSF52540


","BeTs to 11 clades of COG0218COG name: Predicted GTPasesFunctional Class: RThe phylogenetic pattern of COG0218 is am-kyqv-eb-hujgp----xNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 28-180 are 31% similar to a (PROTEIN GTP-BINDING LIPOPROTEIN PRENYLATION RAS-RELATED) protein domain (PD000015) which is seen in O57939_PYRHO.Residues 62-188 are 41% similar to a (PROTEIN GTP-BINDING REGION INTERGENIC) protein domain (PD006719) which is seen in YK98_ARATH.Residues 25-63 are 69% similar to a (PROTEIN GTP-BINDING INTERGENIC REGION HOMOLOG ERA IRON) protein domain (PD000414) which is seen in YIHA_ECOLI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Feb 21 14:38:31 MST 2001","Wed Feb 21 14:38:31 MST 2001","Thu Apr 26 13:30:48 MDT 2001","","Wed Feb 21 14:38:31 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Feb 21 14:38:31 MST 2001","-64% similar to PDB:1SUL Crystal Structure of the apo-YsxC (E_value = 1.0E_37);-64% similar to PDB:1SVI Crystal Structure of the GTP-binding protein YsxC complexed with GDP (E_value = 1.0E_37);-64% similar to PDB:1SVW Crystal Structure of YsxC complexed with GMPPNP (E_value = 1.0E_37);-56% similar to PDB:1PUI Structure of EngB GTPase (E_value = 1.2E_30);","","","No significant hits to the Pfam 11.0 database","Thu Apr 26 13:30:48 MDT 2001","34540179","","","","","","1","","","PG0346" "PG0319","381414","382439","1026","ATGAAACAAAAGATTCTCGTTACCGGCGGGACAGGATATATAGGATCCCATACGACTGTGGAGCTACAGCAGGCAGGCTATCGGGTCGTGAGTGTGGACAACTTCTCCAACTCCAATGCTGCTGTGCTCGACGGTATAGCCCGGATTACAGGGGTTCGCCCCGATTTTTATGAGGCCGACTGTAATGATACGGAGGCGATGGAGCGCGTCTTTACGGCGCATCCCGATATAGCAGGCGTCATTCATTTTGCTGCAAGTAAGGCCGTAGGCGAATCGGTGCAGAAGCCGCTTTTGTACTACAGGAACAATATCCTCTCACTGCTGAATATCCTCGAACTGATGGAGCGATTCGGCACTCGTGGGATCGTATTTTCCTCATCCTGTACGGTGTACGGACAGCCGGAGGTATTGCCCGTAACGGAAGAGGCTCCGATACAGGAAGCTCTCTCTCCCTATGGCAATACGAAGCAAATCAACGAGGAGATTATCCGCGATGCTATCCATGCCGGAGCAGGGTACAAGGCTATACTTCTGCGCTACTTCAATCCGATCGGGGCACACCCCACGGCGCATATCGGAGAGCTTCCTAACGGAGTGCCACAGAATCTGATCCCTTATTTGACTCAAACGGCAGCAGGCATCAGAGCCGAACTGAGCGTCTTCGGCGATGACTACGACACGCCCGACGGCTCTTGTATCCGGGACTATATCTATGTGGTGGATTTGGCCAAAGCGCATGTGGCTGCCATCGAACGGATGCTGAATGAAGAGAAAGCGAGCGATTCGCTCGAAGTCTTTAATATAGGTACGGGTAGGGGCGTGAGCGTGCTGGAGCTTATCCGTACCTTCGAACGGGTGACAGGCGTTGCTGTTCCTCATCGGATAGTAGGAAGGCGCGAAGGCGATATCGAACAGGTATGGGCCGAGCCGAAGAAAGCCAATGAGGTGTTGGGTTGGAAAGCTTTGGAGTCGTTGGAAGACACACTGCTGAGTGCATGGCGTTGGCAGCAACGCTTGTCGGAGAAG","5.10","-10.19","37644","MKQKILVTGGTGYIGSHTTVELQQAGYRVVSVDNFSNSNAAVLDGIARITGVRPDFYEADCNDTEAMERVFTAHPDIAGVIHFAASKAVGESVQKPLLYYRNNILSLLNILELMERFGTRGIVFSSSCTVYGQPEVLPVTEEAPIQEALSPYGNTKQINEEIIRDAIHAGAGYKAILLRYFNPIGAHPTAHIGELPNGVPQNLIPYLTQTAAGIRAELSVFGDDYDTPDGSCIRDYIYVVDLAKAHVAAIERMLNEEKASDSLEVFNIGTGRGVSVLELIRTFERVTGVAVPHRIVGRREGDIEQVWAEPKKANEVLGWKALESLEDTLLSAWRWQQRLSEK","381414 382439","TIGR ID: PG0347","NAD-dependent epimerase/dehydratase","Cytoplasm","Very high identity (50%) to sp|P55180|GALE_BACSU, a UDP-glucose 4-epimerase in B. subtilis at residues 5 to 336. 49% identity with gb|AAD05470.1| (AF064070), a putative UDP-glucose 4-epimerase in Burkholderia pseudomallei at residues 2 to 337. Shares 45% identity at residues 4 to 336 with pir||F82419, a UDP-glucose 4-epimerase in Vibrio cholerae. This same region shares a similar degree of identity with a number of other baterial genera.This sequence is similar to BT0623.","
InterPro
IPR001509
Family
NAD-dependent epimerase/dehydratase
PF01370\"[5-269]TEpimerase
InterPro
IPR005886
Family
UDP-glucose 4-epimerase
PTHR10366:SF39\"[7-338]TGalE
TIGR01179\"[4-342]TgalE
InterPro
IPR008089
Family
Nucleotide sugar epimerase
PR01713\"[234-249]T\"[263-278]T\"[302-319]TNUCEPIMERASE
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.720\"[1-215]TG3DSA:3.40.50.720
PTHR10366\"[7-338]TPTHR10366
SSF51735\"[3-338]TSSF51735


","BeTs to 8 clades of COG1087COG name: UDP-glucose 4-epimeraseFunctional Class: MThe phylogenetic pattern of COG1087 is --t-yq-Ceb-hujgp-----Number of proteins in this genome belonging to this COG is 1","***** PF01370 (NAD dependent epimerase/dehydratase family) with a combined E-value of 4.7e-55. PF01370A 6-16 PF01370B 51-65 PF01370C 78-112 PF01370D 121-132 PF01370E 229-241 PF01370F 264-273 PF01370G 299-339","Residues 5-336 are 50% similar to a (PROTEIN OXIDOREDUCTASE DEHYDROGENASE REDUCTASE NAD NADP) protein domain (PD000038) which is seen in GALE_BACSU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Feb 21 15:21:42 MST 2001","Tue Dec 2 17:18:46 2003","Tue Jan 7 14:22:13 2003","Wed Feb 21 15:09:44 MST 2001","Wed Feb 21 15:09:44 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 2 to 335 share 26% identity with PG1365, predicted dTDP-glucose 4,6-dehydratase.","Mon Apr 2 13:36:42 MDT 2001","Wed Feb 21 15:09:44 MST 2001","-61% similar to PDB:1EK5 STRUCTURE OF HUMAN UDP-GALACTOSE 4-EPIMERASE IN COMPLEX WITH NAD+ (E_value = 1.6E_80);-61% similar to PDB:1EK6 STRUCTURE OF HUMAN UDP-GALACTOSE 4-EPIMERASE COMPLEXED WITH NADH AND UDP-GLUCOSE (E_value = 1.6E_80);-60% similar to PDB:1HZJ HUMAN UDP-GALACTOSE 4-EPIMERASE: ACCOMMODATION OF UDP-N-ACETYLGLUCOSAMINE WITHIN THE ACTIVE SITE (E_value = 4.7E_80);-60% similar to PDB:1I3K MOLECULAR BASIS FOR SEVERE EPIMERASE-DEFICIENCY GALACTOSEMIA: X-RAY STRUCTURE OF THE HUMAN V94M-SUBSTITUTED UDP-GALACTOSE 4-EPIMERASE (E_value = 1.1E_79);-60% similar to PDB:1I3L MOLECULAR BASIS FOR SEVERE EPIMERASE-DEFICIENCY GALACTOSEMIA: X-RAY STRUCTURE OF THE HUMAN V94M-SUBSTITUTED UDP-GALACTOSE 4-EPIMERASE (E_value = 1.1E_79);","","","Residues 5 to 340 (E-value = 1.9e-122) place PG0319 in the Epimerase family which is described as NAD dependent epimerase/dehydratase family (PF01370)","Fri Mar 9 15:34:46 MST 2001","34540180","","","","","","1","","","PG0347" "PG0320","382485","384578","2094","ATGGACATCCTATCGACCAAAATCACTTACCTGACCGGCGTAGGGCCGAAGCGGGCGGAAGTACTGAAGGAGGAAATAGAAGTACGTACCTATCTGGATCTTCTCCATTATTTTCCCTTTCGCTATGTCGATAGGAGTCGATTTTATGCCATACGGGAGATACGCTCCGATATGCCCTATATCCAGCTGCGCGGTGTCCTTCGCAACTTCTCCGAGGTGGGCGAAGGACGGCGCAAGCGGCTGACGGCTACTTTCTCGGACGGTACGGGAAGCATAGAGCTGGTTTGGTTCAAGGGTATCAAGTACATACGCGACAAACTGCAGGAAGGACGGCGATATATCGTTTTCGGCAAGCCAGTTTTCTTCGCTTCCGGCTATAACATAGCACATCCCGAAATAGATGCGGAGGAGAAGGCAGAGCAGGTAGCCGGCGGACTGACTCCGATTTATCACACCACAGAGCGCATGAAGAGTATGGGGCTGGGCAGCAAACAGCTCCAGCAACTCCTGTACGTACTCCTCAATCAGGTATCAGCCACACTGACGGAGACACTGCCGCCTTACATCCTTTCGTCTTATGGGTTCGTCTCCTATCAGGAGGCCATCAGACAGATTCATTTCCCTCAGGGGGTGGCACAGCTGGAAGCTGCCCGTACAAGACTCAAGTTCGAAGAGCTGTTCTATGTGCAGCTGCATCTGATCGGCAGCAAGCTGGAGCGTAAAGCGCGTTTTCAGGGAATTGTTTTTGCTCAAGTGGGAGCCTTATTCAATACATTCTACAAGGAACATCTGCCTTTCGAACTGACCGGTGCGCAGAAAAGGGTGATACGGGAGATCCGGCAGGATACCCTCAGCGGACATCAAATGAACCGACTGGTGCAGGGCGATGTGGGTAGCGGTAAAACTTTGGTAGCCTTGCTGTCCATGCTGTTGGCTCTGGACAATGGCTGTCAGGCTTGCCTGATGGCTCCGACCGAAATTCTCGCCAGACAGCATCATCATACCCTGTCCGAGCTGTTGCGACCGCTTGGCATAGAAGTCGGTTTGCTCATCGGAAGCTGTACCGCACGTCAGCGGGAACGCTTGCTTCCGCGTCTGGCCGATGGCTCGCTCTCCATCGTCGTCGGCACGCATGCCCTATTGGAACAGGGAGTGGCCTTTCGTCGTTTGGGAATGGCAGTCATAGACGAGCAGCACCGATTCGGCGTACAGCAGCGAGCCCGCCTGTGGGAAAAGAACCTCGACACTCTGCCCCATATTCTGATTATGAGTGCCACCCCCATACCTCGTACATTGGCCATGACGTTGTACGGCGATCTGGATATTTCCATCATTGACGAATTGCCTCCCGGCCGTAAGCCCATACAGACGCTCCACCACTTCGACAACGATATGGCTCCGGTCTTTCGTTTCCTGCGATCTCAGCTTGCCGCAGGCCGGCAGGTGTATGTGGTGTATCCGATGATCGAGGGGTCGGAGACGACCGATCTGAAGAATCTTGAAGATGGCTTCGAGCTGTTCTCTTCCATTTTCCCCGATGAGGGCGTGACGATGGTGCACGGCAAGATGAAAGCCAAGGAAAAGGAGGCACGTATGGCGGACTTCGTCAGCGGTCGCTCCCGTATCTTGTTGGCTACGACGGTTATCGAAGTCGGAGTGAATGTCCCCAATGCTACGGTGATGGTAGTGGAGAATGCCGATCGTTTCGGCCTGTCGCAGCTACACCAGCTTAGAGGACGTGTAGGCCGCGGAGGAGAGCAAAGCTATTGCATCCTGATCACGGGAACGAAAACAGGAGAGGATTCGCGTCGGCGTATTCAGGTGATGGTGGAGACGAACGATGGATTCGAAATAGCAGAGGAAGATATGCGCCTTCGTGGTTTCGGCGACTTGGAGGGTACGCGCCAGAGCGGTCGTCAGATCAGCCTTCGGATAGCCAATCCCGCACGAGATACGGAGCTGATAGCTCTTTCCCGAAGTATAGCGGAGCAACTACTGGAGCGCGACCCCGAACTTCGCCATCCCGACAATCAAATGCTGGCTCTTCGTCTGAACAAACTTTTCCCCAAGGAGGAAGACTGGAGTGTCATAAGC","8.80","8.22","78989","MDILSTKITYLTGVGPKRAEVLKEEIEVRTYLDLLHYFPFRYVDRSRFYAIREIRSDMPYIQLRGVLRNFSEVGEGRRKRLTATFSDGTGSIELVWFKGIKYIRDKLQEGRRYIVFGKPVFFASGYNIAHPEIDAEEKAEQVAGGLTPIYHTTERMKSMGLGSKQLQQLLYVLLNQVSATLTETLPPYILSSYGFVSYQEAIRQIHFPQGVAQLEAARTRLKFEELFYVQLHLIGSKLERKARFQGIVFAQVGALFNTFYKEHLPFELTGAQKRVIREIRQDTLSGHQMNRLVQGDVGSGKTLVALLSMLLALDNGCQACLMAPTEILARQHHHTLSELLRPLGIEVGLLIGSCTARQRERLLPRLADGSLSIVVGTHALLEQGVAFRRLGMAVIDEQHRFGVQQRARLWEKNLDTLPHILIMSATPIPRTLAMTLYGDLDISIIDELPPGRKPIQTLHHFDNDMAPVFRFLRSQLAAGRQVYVVYPMIEGSETTDLKNLEDGFELFSSIFPDEGVTMVHGKMKAKEKEARMADFVSGRSRILLATTVIEVGVNVPNATVMVVENADRFGLSQLHQLRGRVGRGGEQSYCILITGTKTGEDSRRRIQVMVETNDGFEIAEEDMRLRGFGDLEGTRQSGRQISLRIANPARDTELIALSRSIAEQLLERDPELRHPDNQMLALRLNKLFPKEEDWSVIS","382485 384578","TIGR ID: PG0348","ATP-dependent DNA helicase","Cytoplasm","Shares 40 % identity with sp|Q55681|RECG_SYNY3, an ATP-dependent DNA helicase recG in Synechocystis sp. (strain PCC 6803) at residues 4 to 691.Shares 39% identity with pir||H75338, a DNA helicase RecG in Deinococcus radiodurans at residues 15 to 680.Shares 38% identity with pir||G72405, an ATP-dependent DNA helicase in Thermotoga maritima at residues 4 to 665. Also shows similar level of identity in the same region to ATP-dependent DNA helicases in other bacterial and eukarotic genera.This sequence is similar to BT3924.","
InterPro
IPR000595
Domain
Cyclic nucleotide-binding
SSF51206\"[650-686]TcNMP_binding
InterPro
IPR001650
Domain
Helicase, C-terminal
PF00271\"[510-585]THelicase_C
SM00490\"[501-585]THELICc
PS51194\"[464-624]THELICASE_CTER
InterPro
IPR004365
Domain
Nucleic acid binding, OB-fold, tRNA/helicase-type
PF01336\"[61-136]TtRNA_anti
InterPro
IPR004609
Family
ATP-dependent DNA helicase RecG
TIGR00643\"[26-662]TrecG
InterPro
IPR011545
Domain
DEAD/DEAH box helicase, N-terminal
PF00270\"[269-435]TDEAD
InterPro
IPR014001
Domain
DEAD-like helicases, N-terminal
SM00487\"[264-456]TDEXDc
InterPro
IPR014021
Domain
Helicase superfamily 1 and 2 ATP-binding
PS51192\"[282-445]THELICASE_ATP_BIND_1
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[256-427]T\"[516-625]TG3DSA:3.40.50.300
PTHR10967\"[267-693]TPTHR10967
SSF50249\"[1-186]TNucleic_acid_OB


","BeTs to 9 clades of COG1200COG name: RecG-like helicasesFunctional Class: L,KThe phylogenetic pattern of COG1200 is -----qvcebrhuj--ol--xNumber of proteins in this genome belonging to this COG is 1","***** BP01310 (HELICASE PROTEIN ATP-BINDI) with a combined E-value of 1.5e-06. BP01310A 514-560 BP01310B 572-585","Residues 264-347 are 53% similar to a (HELICASE ATP-BINDING RNA-BINDING PROTEIN RNA) protein domain (PD000085) which is seen in RECG_HAEIN.Residues 602-672 are 39% similar to a (HELICASE ATP-DEPENDENT DNA PUTATIVE) protein domain (PD099850) which is seen in Q9ZBR3_STRCO.Residues 14-233 are 30% similar to a (DNA HELICASE ATP-DEPENDENT RECG REPAIR ATP-BINDING) protein domain (PD006348) which is seen in Q9ZBR3_STRCO.Residues 472-593 are 48% similar to a (HELICASE PROTEIN POLYPROTEIN ATP-BINDING RNA RNA-BINDING) protein domain (PD000033) which is seen in RECG_BACSU.Residues 468-656 are 34% similar to a (ATP-DEPENDENT DNA HELICASE RECG REPAIR ATP-BINDING) protein domain (PD099794) which is seen in Q9ZJA1_BBBBB.Residues 349-457 are 57% similar to a (HELICASE DNA REPAIR ATP-BINDING) protein domain (PD003500) which is seen in RECG_AQUAE.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Feb 21 15:36:27 MST 2001","Sat Jan 3 10:12:55 2004","Fri Mar 9 14:00:06 MST 2001","Wed Feb 21 15:36:27 MST 2001","Wed Feb 21 15:36:27 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 210 to 638 share 34% identity with PG1549, a transcription repair coupling factor (TCRF) helicase.","Wed Feb 21 15:36:27 MST 2001","Wed Feb 21 15:36:27 MST 2001","-56% similar to PDB:1GM5 STRUCTURE OF RECG BOUND TO THREE-WAY DNA JUNCTION (E_value = 4.6E_118);-51% similar to PDB:2EYQ Crystal structure of Escherichia coli transcription-repair coupling factor (E_value = 9.7E_60);","","","Residues 61 to 136 (E-value = 9.2e-05) place PG0320 in the tRNA_anti family which is described as OB-fold nucleic acid binding domain (PF01336)Residues 258 to 456 (E-value = 1.1e-32) place PG0320 in the DEAD family which is described as DEAD/DEAH box helicase (PF00270)Residues 510 to 585 (E-value = 1.2e-19) place PG0320 in the Helicase_C family which is described as Helicase conserved C-terminal domain (PF00271)","Sat Jan 3 10:12:55 2004","34540181","","","","","","1","","","PG0348" "PG0321","384599","385348","750","ATGGACTACAATAACATAACGGAGGCATTACAGGCTTTCCGCACAGAGAAGGCATACCGGCATGCCCCTCTCCGTTCGTGCTTTTTCGATATGGACGGAGTGCTGTTCGATTCCATGCCGGCACATGCACGGAGTTGGGTGGAGGCTGCCGGAGAATGCGGTATCGCTGCGGAGCCGCTGGATTTCTATCGCTGGGAAGGACAGAAGGGTAGCGATACCATCAAGATCCTGTTCGAACGGGGATACGGACGACTGCCGACAGAAAAAGAAATAGCCGATATGTACGGGCGCAAGAGCCAACTCTTCGCTTTGTACAATTCCGGAAACGTGATCGACGATGCTCCGGCTCTGGTGTCGGACGTTTGTGACCGGGGCTTGCGTATCATGCTGGTGACAGGTTCGTCCCAGACTGATATATTGCAGCGTTTGCAAAGAAGTTATGGCGACAATTTCAGTCCTGCAAACATGGTGACAGGTGCCGATGTACACCGTGGAAAACCTCATCCGGAGCCTTATCTCAAGGCATTGGAGTGCGTGGGGATGTCGCCTTCCGAGGCTTTTGTGGTAGAGAATGCTCCGCTGGGAGTTCGTGCTGCTGTCGATGCCGGTATCTTTACCATTGCAGTGAATACAGGTTGCTTGCCCGATGCCGATTTGTGGGATGCCGGTGCATCGCTTGTCCTTCCCTCGATGGCTGTCCTTCGTTCACTATTGGGCGAATTGCTTACCGAATCTCTCTCTTCCTCGGCC","4.70","-10.26","27190","MDYNNITEALQAFRTEKAYRHAPLRSCFFDMDGVLFDSMPAHARSWVEAAGECGIAAEPLDFYRWEGQKGSDTIKILFERGYGRLPTEKEIADMYGRKSQLFALYNSGNVIDDAPALVSDVCDRGLRIMLVTGSSQTDILQRLQRSYGDNFSPANMVTGADVHRGKPHPEPYLKALECVGMSPSEAFVVENAPLGVRAAVDAGIFTIAVNTGCLPDADLWDAGASLVLPSMAVLRSLLGELLTESLSSSA","384581 385348 [Delay by 330 424 328 0]","TIGR ID: PG0349","conserved hypothetical protein (possible glycerol-3-phosphatase)","Cytoplasm","Residues 29-210 share 33% similarity to both (AE005461) and sp|P77625|YFBT_ECOLI, putative phosphatases in E. coli.Also shares 29% similarity with emb|CAB76079.1| (AL157953), a putative phosphatase in Streptomyces coelicolor at residues 25 to 240.","
InterPro
IPR005834
Domain
Haloacid dehalogenase-like hydrolase
PF00702\"[24-212]THydrolase
InterPro
IPR006402
Domain
HAD-superfamily hydrolase, subfamily IA, variant 3
TIGR01509\"[26-209]THAD-SF-IA-v3
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.1000\"[19-249]TG3DSA:3.40.50.1000
PTHR18901\"[18-244]TPTHR18901
SSF56784\"[23-238]TSSF56784


","BeTs to 6 clades of COG0637COG name: Predicted phosphatase/phosphohexomutaseFunctional Class: RThe phylogenetic pattern of COG0637 is ---kY-vcEbRh------in-Number of proteins in this genome belonging to this COG is 1","***** BP03468 (PROTEIN PHOSPHOGLYCOLATE PHOSPHATASE HY) with a combined E-value of 2.4e-17. BP03468A 27-40 BP03468B 166-209","No significant hit to the ProDom database.","","Thu Jun 14 10:44:58 MDT 2001","","Thu Jun 14 10:44:58 MDT 2001","Thu Jun 14 10:44:58 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 10:44:58 MDT 2001","Thu Jun 14 10:44:58 MDT 2001","","","Wed Jun 20 11:49:39 MDT 2001","Wed Jun 20 11:49:39 MDT 2001","Thu Jun 14 10:44:58 MDT 2001","Wed Jun 20 11:49:39 MDT 2001","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Feb 21 15:42:55 MST 2001","-47% similar to PDB:1LVH The Structure of Phosphorylated beta-phosphoglucomutase from Lactoccocus lactis to 2.3 angstrom resolution (E_value = 5.7E_10);-47% similar to PDB:1O03 Structure of Pentavalent Phosphorous Intermediate of an Enzyme Catalyzed Phosphoryl transfer Reaction observed on cocrystallization with Glucose 6-phosphate (E_value = 5.7E_10);-47% similar to PDB:1O08 Structure of Pentavalent Phosphorous Intermediate of an Enzyme Catalyzed Phosphoryl transfer Reaction observed on cocrystallization with Glucose 1-phosphate (E_value = 5.7E_10);-47% similar to PDB:1Z4N Structure of beta-phosphoglucomutase with inhibitor bound alpha-galactose 1-phosphate cocrystallized with Fluoride (E_value = 5.7E_10);-47% similar to PDB:1Z4O Structure of beta-phosphoglucomutase with inhibitor bound alpha-galactose 1-phosphate (E_value = 5.7E_10);","","","Residues 24 to 212 (E-value = 1.5e-23) place PG0321 in the Hydrolase family which is described as haloacid dehalogenase-like hydrolase (PF00702)","Wed Jun 20 11:49:39 MDT 2001","34540182","","","","","","1","","","PG0349" "PG0322","386900","385449","1452","ATGAAAAGAAAACCGCTATTCTCAGCCCTTGTAATCCTTTCCGGCTTCTTCGGATCGGTTCACCCGGCCTCAGCACAGAAAGTTCCTGCACCCGTCGATGGCGAGCGCATTATCATGGAGCTAAGTGAAGCCGATGTGGAGTGTACAATCAAAATAGAAGCCGAGGATGGCTATGCCAACGACATTTGGGCAGACCTCAACGGAAACGGCAAGTACGATTCGGGGGAGAGGCTCGATTCAGGTGAGTTTCGTGATGTTGAGTTCAGACAAACAAAGGCCATCGTCTATGGCAAAATGGCCAAATTCTTGTTTAGAGGTTCTTCTGCAGGGGACTATGGTGCTACCTTTATAGATATTAGCAATTGTACCGGCCTGACTGCTTTCGACTGCTTTGCCAATCTGCTGACAGAACTCGATCTGTCCAAAGCAAACGGTCTGACTTTTGTAAACTGCGGCAAAAACCAGCTGACCAAGCTTGACCTGCCCGCAAATGCGGACATTGAGACGCTGAACTGCTCCAAAAACAAGATAACGAGTCTCAACCTATCGACCTATACCAAGCTGAAAGAGCTTTATGTGGGCGACAACGGGCTGACAGCCTTGGATCTCTCCGCCAATACGCTCCTCGAAGAGCTGGTGTATTCTAACAACGAGGTGACTACGATAAACCTGTCTGCCAATACGAACTTGAAAAGCCTGTATTGCATAAACAATAAGATGACCGGACTCGATGTCGCAGCCAACAAAGAGCTGAAAATACTCCACTGCAACAACAATCAGCTGACCGCCCTCAATCTCTCGGCCAATACCAAGCTGACGACTCTAAGCTTCTTCAACAACGAGCTGACAAATATCGATCTCTCCGACAACACGGCTTTGGAGTGGCTTTTCTGCAACGGCAATAAGCTGACGAAGTTAGATGTATCTGCCAACGCCAATCTGATAGCACTGCAATGCAGCAACAACCAGCTGACTGCTCTGGATCTGTCAAAAACGCCGAAACTGACAACGTTGAATTGCTACTCCAACCGGATCAAAGATACCGCCATGCGTGCATTGATCGAAAGCCTGCCTACGATCACTGAAGGAGAAGGCAGGTTCGTTCCTTACAACGACGATGAAGGAGGAGAAGAGGAGAACGTGTGTACAACCGAACACGTGGAAATGGCCAAGGCCAAGAATTGGAAGGTACTTACCTCGTGGGGAGAGCCTTTCCCCGGAATAACGGCTTTGATTTCCATCGAAGGTGAGAGCGAATATTCCGTATATGCTCAAGATGGCATCCTCTACCTCTCCGGTATGGAGCAGGGCTTGCCCGTTCAGGTATATACCGTGGGAGGAAGCATGATGTACTCATCTGTCGCTTCCGGATCAGCCATGGAAATACAGCTCCCGAGAGGTGCAGCCTATGTAGTACGTATCGGCAGCCATGCGATCAAAACCGCGATGCCG","4.60","-17.52","52669","MKRKPLFSALVILSGFFGSVHPASAQKVPAPVDGERIIMELSEADVECTIKIEAEDGYANDIWADLNGNGKYDSGERLDSGEFRDVEFRQTKAIVYGKMAKFLFRGSSAGDYGATFIDISNCTGLTAFDCFANLLTELDLSKANGLTFVNCGKNQLTKLDLPANADIETLNCSKNKITSLNLSTYTKLKELYVGDNGLTALDLSANTLLEELVYSNNEVTTINLSANTNLKSLYCINNKMTGLDVAANKELKILHCNNNQLTALNLSANTKLTTLSFFNNELTNIDLSDNTALEWLFCNGNKLTKLDVSANANLIALQCSNNQLTALDLSKTPKLTTLNCYSNRIKDTAMRALIESLPTITEGEGRFVPYNDDEGGEEENVCTTEHVEMAKAKNWKVLTSWGEPFPGITALISIEGESEYSVYAQDGILYLSGMEQGLPVQVYTVGGSMMYSSVASGSAMEIQLPRGAAYVVRIGSHAIKTAMP","386900 385449","TIGR ID: PG0350","conserved hypothetical protein","Extracellular, Outer membrane, Cytoplasm","Shares 38% identity with gb|AAD38982.1|AF153770_1 (AF153770), an immunoreactive 47 kDa antigen PG97 in Porphyromonas gingivalis at residues 170 to 398.Also shares 29% idnetity at residues 129-358 with gb|AAD39928.1|AF127079_1 (AF127079), a leucine-rich repeat protein SlrP in Salmonella typhimurium.","
InterPro
IPR001611
Repeat
Leucine-rich repeat
PR00019\"[167-180]T\"[195-208]TLEURICHRPT
PF00560\"[187-208]TLRR_1
noIPR
unintegrated
unintegrated
G3DSA:3.80.10.10\"[123-348]TG3DSA:3.80.10.10
PTHR23154\"[124-362]TPTHR23154
PTHR23154:SF51\"[124-362]TPTHR23154:SF51
SSF52058\"[85-350]TSSF52058


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 251-347 are 40% similar to a (PROTEIN REPEAT PRECURSOR GLYCOPROTEIN SIGNAL) protein domain (PD000020) which is seen in O33932_LISMO.Residues 134-347 are 24% similar to a (HYPOTHETICAL 36.2 KD PROTEIN) protein domain (PD080334) which is seen in YDDK_ECOLI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Feb 21 16:20:41 MST 2001","Wed Feb 21 16:20:41 MST 2001","Wed Feb 21 16:20:41 MST 2001","","Wed Feb 21 16:20:41 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 170 to 403 are 38% similar to PG1208.","Wed Feb 21 16:20:41 MST 2001","Wed Feb 21 16:20:41 MST 2001","-49% similar to PDB:1O6S INTERNALIN (LISTERIA MONOCYTOGENES) / E-CADHERIN (HUMAN) RECOGNITION COMPLEX (E_value = 6.9E_14);-49% similar to PDB:1O6T INTERNALIN (INLA,LISTERIA MONOCYTOGENES)- FUNCTIONAL DOMAIN,UNCOMPLEXED (E_value = 6.9E_14);-49% similar to PDB:1O6V INTERNALIN (INLA,LISTERIA MONOCYTOGENES)- FUNCTIONAL DOMAIN UNCOMPLEXED (E_value = 6.9E_14);","","","No significant hits to the Pfam 11.0 database","Mon Apr 2 13:38:48 MDT 2001","34540183","","","","","","1","","","PG0350" "PG0323","386914","387171","258","TTGGTTTGTGAAAAATGGTTAGTATTTGTACTGATCTCATGTTTTCAAAATCTCATTGCCAATTCGGCCGGAGGGTTTGTAGCTGCCATTATCCGAGGTTGGAAGAAAAAAGCGTGTCTTCCATTTTCATTTCGTCGTAGGGCAACGAAGGAAAGCGGATGGATCTGTTTTGGTTTGTGCGCCTTTCTCTGGATAGCGCCTTTGTTCGAACTGCGTCAATACAGAGGTATTATCCTTGCCTTAGGTAAGGCAAATATA","10.70","8.74","9707","LVCEKWLVFVLISCFQNLIANSAGGFVAAIIRGWKKKACLPFSFRRRATKESGWICFGLCAFLWIAPLFELRQYRGIILALGKANI","386914 387171","TIGR ID: PG0351","hypothetical protein","Inner membrane, Extracellular","No hit found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Feb 15 15:30:26 MST 2001","","Thu Feb 15 15:30:26 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 15 15:30:26 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540184","","","","","","1","","","PG0351" "PG0324","387327","388904","1578","ATGGCAAATAATACTCTTTTGGCGAAGACTCGACGTTATGTCTGCCTTGTCGGTTTCTGTTGGCTCATGGCGATGATGCACCTCTCTGGGCAGGAAGTCACTATGTGGGGGGACAGCCATGGAGTGGCGCCGAACCAAGTGCGCCGAACGCTGGTGAAGGTAGCCTTAAGTGAATCCCTTCCTCCGGGTGCAAAACAGATTCGTATCGGATTCTCTCTTCCGAAAGAAACGGAGGAAAAAGTCACCGCCCTATATCTCCTTGTGAGTGATTCTTTAGCGGTGCGCGACTTGCCGGACTACAAAGGGCGAGTCTCTTACGATAGCTTCCCGATCTCAAAGGAAGATCGTACCACAGCCCTTTCTGCGGATTCGGTAGCCGGACGCCGCTTCTTTTATTTGGCTGCGGATATAGGGCCTGTTGCTTCTTTTTCCCGATCCGATACGCTGACTGCCCGTGTGGAAGAGGTGGCTGTCGATGGCCGCCCTTTGCCGTTGAAAGAGCTGTCGCCTGCCTCCCGTCGTCTGTATAGGGGGTATGAGGCCCTCTTTGTACCCGGTGATGGCGGATCGCGGAACTATCGTATCCCGGCCATTTTGAAAACGGCTAATGGAACACTCATAGCGATGGCCGACAGACGAAAATATAATCAGACGGATCTGCCGGAGGATATAGATATAGTCATGCGGCGCAGTACGGACGGAGGGAAATCGTGGAGCGATCCCAGGATTATCGTACAGGGAGAGGGGCGCAATCATGGCTTTGGCGATGTAGCCCTGGTGCAAACCCAAGCAGGAAAGCTCCTGATGATCTTTGTCGGTGGAGTAGGCCTGTGGCAGTCTACCCCCGATCGTCCTCAGCGCACTTATATATCGGAAAGTCGGGACGAAGGACTGACTTGGTCGCCTCCTCGGGATATAACCCATTTCATCTTCGGCAAGGATTGTGCCGATCCGGGACGCAGTCGCTGGTTGGCCTCCTTTTGTGCTTCGGGACAAGGGCTTGTGCTGCCATCCGGTCGTATCACGTTTGTGGCTGCCATCCGCGAATCAGGGCAGGAGTACGTCCTGAACAACTATGTCCTCTATAGCGACGATGAGGGCGATACATGGCAGCTTTCCGACTGTGCATACCGCCGTGGCGATGAGGCAAAGCTTTCATTGATGCCCGATGGCAGGGTACTGATGAGCATACGCAATCAGGGACGGCAGGAGAGCCGACAGCGTTTCTTCGCTCTCTCCTCCGACGATGGCCTTACTTGGGAGAGAGCCAAGCAGTTCGAGGGCATCCATGACCCCGGCTGTAATGGAGCTATGCTTCAAGTGAAAAGGAACGGAAGGGATCAAGTGCTGCACTCCCTGCCTCTCGGCCCGGATGGGCGTCGCGATGGAGCTGTCTATCTCTTCGATCATGTCTCCGGCCGCTGGTCCGCTCCCGTTGTTGTCAATTCAGGATCGAGTGCCTACTCGGATATGACTCTGCTGGCGGATGGAACGATCGGTTATTTCGTCGAAGAGGGCGATGAGATCTCATTGGTTTTCATTCGGTTCGTCCTTGACGATCTCTTCGATGTCCGGCAA","6.60","-1.56","58340","MANNTLLAKTRRYVCLVGFCWLMAMMHLSGQEVTMWGDSHGVAPNQVRRTLVKVALSESLPPGAKQIRIGFSLPKETEEKVTALYLLVSDSLAVRDLPDYKGRVSYDSFPISKEDRTTALSADSVAGRRFFYLAADIGPVASFSRSDTLTARVEEVAVDGRPLPLKELSPASRRLYRGYEALFVPGDGGSRNYRIPAILKTANGTLIAMADRRKYNQTDLPEDIDIVMRRSTDGGKSWSDPRIIVQGEGRNHGFGDVALVQTQAGKLLMIFVGGVGLWQSTPDRPQRTYISESRDEGLTWSPPRDITHFIFGKDCADPGRSRWLASFCASGQGLVLPSGRITFVAAIRESGQEYVLNNYVLYSDDEGDTWQLSDCAYRRGDEAKLSLMPDGRVLMSIRNQGRQESRQRFFALSSDDGLTWERAKQFEGIHDPGCNGAMLQVKRNGRDQVLHSLPLGPDGRRDGAVYLFDHVSGRWSAPVVVNSGSSAYSDMTLLADGTIGYFVEEGDEISLVFIRFVLDDLFDVRQ","387318 388904","TIGR ID: PG0352","conserved hypothetical protein (possible sialidase)","Outer membrane, Periplasm, Extracellular","Shares 30% identity with sp|Q02834|NANH_MICVI, a sialidase precursor (neuraminidase) in Micromonospora viridifaciens at residues 157-509.Shares 30% identity with pir||A49227, a sialidase in Actinomyces viscosus at residues 148-505.Shares 25% identity with pir||JC2500, an exo-alpha-sialidase (EC 3.2.1.18) precursor in Bacteroides fragilis at residues 127-504.","
InterPro
IPR002860
Repeat
Glycoside hydrolase, BNR repeat
PF02012\"[229-240]T\"[291-302]T\"[361-372]T\"[411-422]TBNR
InterPro
IPR011040
Domain
Neuraminidase
SSF50939\"[179-525]TSialidase
noIPR
unintegrated
unintegrated
G3DSA:2.120.10.10\"[173-516]TG3DSA:2.120.10.10
PTHR10628\"[163-521]TPTHR10628
PTHR10628:SF9\"[163-521]TPTHR10628:SF9


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 193-506 are 31% similar to a (SIALIDASE NEURAMINIDASE HYDROLASE GLYCOSIDASE PRECURSOR) protein domain (PD001106) which is seen in NANH_MICVI.","","Thu Jun 14 10:45:18 MDT 2001","","Thu Jun 14 10:45:18 MDT 2001","Thu Jun 14 10:45:18 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 10:45:18 MDT 2001","Thu Jun 14 10:45:18 MDT 2001","","","Wed Jun 20 11:53:32 MDT 2001","Wed Jun 20 11:53:32 MDT 2001","Wed Feb 21 16:28:45 MST 2001","","Wed Jun 20 11:53:32 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Feb 21 16:28:45 MST 2001","-44% similar to PDB:1EUR SIALIDASE (E_value = 1.3E_26);-44% similar to PDB:1EUS SIALIDASE COMPLEXED WITH 2-DEOXY-2,3-DEHYDRO-N-ACETYLNEURAMINIC ACID (E_value = 1.3E_26);-44% similar to PDB:1EUT SIALIDASE, LARGE 68KD FORM, COMPLEXED WITH GALACTOSE (E_value = 1.3E_26);-44% similar to PDB:1EUU SIALIDASE OR NEURAMINIDASE, LARGE 68KD FORM (E_value = 1.3E_26);-45% similar to PDB:1WCQ MUTAGENESIS OF THE NUCLEOPHILIC TYROSINE IN A BACTERIAL SIALIDASE TO PHENYLALANINE. (E_value = 6.6E_26);","","","No significant hits to the Pfam 11.0 database","Wed Jun 20 11:53:32 MDT 2001","34540185","","","","","","1","","","PG0352" "PG0325","388948","389178","231","TTGGAGGACAGCTCTACTATCGAGTCAATATCCATCAACCACTATCCCACCGATACGAGCCGAAAATCCTCTGATTGCGGCGCGTCTTTTCTGAAGAAGGTGGTGCCGGAATTTTTTCGTTTTGGTTCGAGATTTTTTTACTTCTCGCGCCAAAGCGAAAAAGTTTACGCACCACGTTTTTCCAAACTGCAAACACAAAAATTCCGGCACGTAAACCGATCGGCTGTGAGA","10.90","7.41","9015","LEDSSTIESISINHYPTDTSRKSSDCGASFLKKVVPEFFRFGSRFFYFSRQSEKVYAPRFSKLQTQKFRHVNRSAVR","388879 389178 [Delay by 66 428 92 0]","TIGR ID: PG0353","hypothetical protein","Periplasm, Cytoplasm","No hit found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 10:45:38 MDT 2001","","Thu Jun 14 10:45:38 MDT 2001","Thu Jun 14 10:45:38 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 10:45:38 MDT 2001","Thu Jun 14 10:45:38 MDT 2001","","","Wed Jun 20 12:00:41 MDT 2001","","Wed Feb 21 16:31:27 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 30-76 share 57% identity with PG1764.1, a hypothetical protein.","Wed Jun 20 13:23:55 MDT 2001","Wed Feb 21 16:31:27 MST 2001","-55% similar to PDB:2H85 Crystal Structure of Nsp 15 from SARS (E_value = );","","","No significant hits to the Pfam 11.0 database","Wed Jun 20 12:00:41 MDT 2001","","","","","","","1","","","PG0353" "PG0326","389224","388985","240","ATGACAACGGAAAAATCAATCCGCCGAAAAAGTGTAGCAGGCATCATCTCACAGCCGATCGGTTTACGTGCCGGAATTTTTGTGTTTGCAGTTTGGAAAAACGTGGTGCGTAAACTTTTTCGCTTTGGCGCGAGAAGTAAAAAAATCTCGAACCAAAACGAAAAAATTCCGGCACCACCTTCTTCAGAAAAGACGCGCCGCAATCAGAGGATTTTCGGCTCGTATCGGTGGGATAGTGGT","12.40","13.98","9134","MTTEKSIRRKSVAGIISQPIGLRAGIFVFAVWKNVVRKLFRFGARSKKISNQNEKIPAPPSSEKTRRNQRIFGSYRWDSG","389224 388985 [Shorter 429 194 13]","NO TIGR ID corresponds to this gene.","hypothetical protein","Periplasm, Cytoplasm","No hit found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Feb 23 16:00:36 MST 2001","","Wed Feb 21 17:32:26 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 31 to 79 are 69% similar to PG0169.2, a hypothetical.","Fri Feb 23 16:00:36 MST 2001","Wed Feb 21 17:32:26 MST 2001","-55% similar to PDB:1SEZ Crystal Structure of Protoporphyrinogen IX Oxidase (E_value = );-53% similar to PDB:1JCU Solution Structure of MTH1692 Protein from Methanobacterium thermoautotrophicum (E_value = );","","","No significant hits to the Pfam 11.0 database","Wed Feb 21 17:32:26 MST 2001","","","","","","","1","","","" "PG0326.1","389554","389799","246","TTGAACTCTTTTGCCACAGAGCTGATTCTAAGTGCCTTCGGAAAAGGTCAAGCCTCCAGTATATGGCTACCAATCAAACAGAATTTTTGGGCTGTAAATGCAAAATTTCGGTGTGAAAATCAACTGAGTATAGGATGTGTATCCTTCTCTTTTGTCGGCTTAGCCTTTCTTTTCCTCCTCCTGTCTGCTTCGTCTTGTAGATTGGGGATAACCTTTAGGGCCTGTACGGTATGTCTGTTGTACCTA","","","9000","LNSFATELILSAFGKGQASSIWLPIKQNFWAVNAKFRCENQLSIGCVSFSFVGLAFLFLLLSASSCRLGITFRACTVCLLYL","","NO TIGR ID corresponds to this gene.","hypothetical protein","Extracellular","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
tmhmm\"[43-63]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Thu Feb 15 15:33:03 MST 2001","","Thu Feb 15 15:33:03 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Fri Feb 23 15:59:31 MST 2001","","","","","","","1","","","" "PG0327","389784","390764","981","ATGTCTGTTGTACCTATAATAATTTATCTTTGCGGTATATCAAATTATGCAAGACTCATGATAATCCGGTGTCTTATCCGTCGTCCGAGAACCGTCCTGTTCGGGTTGATATTCGTGGTAGGTCTTTTCTCTGCGATGGCGCAAGAGAAAAAGGATAGTCTCTCTACGGTTCAGCCAGTGCCGAATAGCAGCATGGTGGAGCAGACCCCTCTTCTCTCCATTGATCACCCCGTCCTGCCCGCTTCTTTTCAGAATACCCGTACACTGAAAAGGTTTAGAGACAAACATCTTTCCGATGCTTTGCTCAATGGATTGAAGCCTCATCGCTCATCTTTGCAATTGAATGAGGAACTCAACTTCGCGGCAGAGCGTCGGGATTTCGTTTCTCCCCTCTTGCAAACTCGCCACGCTGCCGGTGTCCTTTCATGGCGACCGACCGATAGGATGCATTTTTATACATCGGGCAATATCGGTCTTGGCCATGATTTATTGACCGGTGTGCGCAAGGACTTCGGATGGAATGCTGGTGCCGACTTCTTGCTGAGTCAAAATCTTACGGCACATGTCCAAGGCGGTTGGCAGCAGAATTTCGGCTTTATACCTATGACGGCTGTCAATGGCCAACTGCGTTGGCAAGCCACCGAGAGATTGAGTTTTACCACCGGTATCGATTATCGACAGGTACAGTGGAATGCTTTCGATAATAGAACGTTCTCGCTTAAAGGAAGTGCTCGATACGAAGTGATGGACAATGTCTTTGTCAATGGATTTGGCAGCTATCCTCTCTACAGCAGTACGCGCTCAGGACTCAATATGGCTGTTCCGATGCATGGATTCGGCCCTCAGTACGGTGGATCGCTTGAGCTGAAAGTCTCCGAGCGATTCGGCTTTGCCGTCGGTATGGAGCGCGAATACAATATCTGGACTCGTCGGTGGGAAACGCATTACTTTGCTTATCCTGTATTCTATGGCGATAAGAAG","10.50","12.07","37195","MSVVPIIIYLCGISNYARLMIIRCLIRRPRTVLFGLIFVVGLFSAMAQEKKDSLSTVQPVPNSSMVEQTPLLSIDHPVLPASFQNTRTLKRFRDKHLSDALLNGLKPHRSSLQLNEELNFAAERRDFVSPLLQTRHAAGVLSWRPTDRMHFYTSGNIGLGHDLLTGVRKDFGWNAGADFLLSQNLTAHVQGGWQQNFGFIPMTAVNGQLRWQATERLSFTTGIDYRQVQWNAFDNRTFSLKGSARYEVMDNVFVNGFGSYPLYSSTRSGLNMAVPMHGFGPQYGGSLELKVSERFGFAVGMEREYNIWTRRWETHYFAYPVFYGDKK","389784 390764","TIGR ID: PG0355","hypothetical protein","Outer membrane, Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
noIPR
unintegrated
unintegrated
SSF56935\"[165-262]TSSF56935


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Feb 15 15:34:11 MST 2001","","Thu Feb 15 15:34:11 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 15 15:34:11 MST 2001","-46% similar to PDB:1QYG ANTI-COCAINE ANTIBODY M82G2 COMPLEXED WITH BENZOYLECGONINE (E_value = );-46% similar to PDB:1RFD ANTI-COCAINE ANTIBODY M82G2 (E_value = );-46% similar to PDB:1RIU Anti-Cocaine Antibody M82G2 Complexed With Norbenzoylecgonine (E_value = );-46% similar to PDB:1RIV Anti-Cocaine Antibody M82G2 Complexed With meta-Oxybenzoylecgonine (E_value = );-62% similar to PDB:1BZ7 FAB FRAGMENT FROM MURINE ASCITES (E_value = );","","","No significant hits to the Pfam 11.0 database","","34540187","","","","","","1","","","PG0355" "PG0328","390751","391530","780","ATGGCGATAAGAAGTAGTAATATAGAATCAATACAGTGCTTTGTGATGAAAAAAGAAAAACTTTGGATTGCGATCGTCGCCGGTTTGGCTTTCGTATTGGGCCTTTATGCTCTTGGCCGCAGTGTCGCTCAGCTACGCCGCTCTCAGCCTTCGGTGACTGTGACCGGTATGGCCGAGCGTAATTTCAAATCCGATCTGATCGTTTGGACTGCTTCGTACCAGCTCCAGATGATGGATCTCGAATCGGCCTACAAGGCTTTGAAGGAAAAACAGATATTGGTAGCAGACTATTTGAAAAACAAGCAGCTGCCCGATTCGTCTTATATCTTCTCAAGCGTAGCCATCTCTAAAGAATACAACTACTATTACGATCCTCGGCAGGAACAAAACGTCAGGACCTTTGCCGGGTATCTGCTCAGCCAGACAGTTACGGTGACCTCACAGGACATCGAACATGTGGAGAAAATATCTCGCGATATAACGGAGCTGATCAATCAGGGGGTAGAGATTACCTCCGACCGTCCGGCCTATTACTACACCAAGCTCAATGATCTGAAGGTGGAGATGCTGCGCAATGCCTCCGAAGACGCTTTCAATCGTGCTTCGGTCATTGCGGAGGGGAGCGGTTCCTCCGTGGGTAAGATGCTATCTTCTTCGATGGGCGTGTTCCAGATAGTGGGGCTCAACTCGAACGAAGATTATAGCTGGGGAGGTTCGTTCAATACGTCTTCCAAGATGAAGACGGCAAGCATAACGGTTAAGGCTTCTTTCGCTTTGAAG","9.40","3.20","29062","MAIRSSNIESIQCFVMKKEKLWIAIVAGLAFVLGLYALGRSVAQLRRSQPSVTVTGMAERNFKSDLIVWTASYQLQMMDLESAYKALKEKQILVADYLKNKQLPDSSYIFSSVAISKEYNYYYDPRQEQNVRTFAGYLLSQTVTVTSQDIEHVEKISRDITELINQGVEITSDRPAYYYTKLNDLKVEMLRNASEDAFNRASVIAEGSGSSVGKMLSSSMGVFQIVGLNSNEDYSWGGSFNTSSKMKTASITVKASFALK","390751 391530 [Delay by 78 431 92 0]","TIGR ID: PG0356","conserved hypothetical protein","Outer membrane, Periplasm","Residues 29 to 260 share 28% identity with pir||S74891, a hypothetical protein slr1258 in Synechocystis sp.(strain PCC 6803).Residues 24 to 234 share 27% identity with pir||H82492, a conserved hypothetical protein VCA0167 in Vibrio cholerae.","
InterPro
IPR007497
Family
Protein of unknown function DUF541
PF04402\"[48-260]TDUF541


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 40-260 are 29% similar to a (HYPOTHETICAL 27.1 KD PROTEIN) protein domain (PD114764) which is seen in P73798_SYNY3.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Feb 22 13:12:39 MST 2001","Thu Feb 22 13:12:39 MST 2001","Thu Feb 22 13:12:39 MST 2001","","Thu Feb 22 13:12:39 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 22 13:12:39 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 48 to 260 (E-value = 3.1e-19) place PG0328 in the DUF541 family which is described as Protein of unknown function (DUF541) (PF04402)","Thu Feb 22 13:12:39 MST 2001","34540188","","","","","","1","","","PG0356" "PG0329","391580","392491","912","ATGAAGCATATCGTATCTATTGACCAGTGTTCGGCCGAGGACATTCTTCGCATTCTCGATCGGGCAGAGCTATTCGAAAAGAATCCGAATCGGCACCTTTTGGAGGGTAAGGTCGTAGCCACTCTTTTCTTTGAGCCTTCTACCCGTACGCGCCTGAGTTTTGAGACGGCTGTGAACCGCCTCGGAGGCCGTATCATCGGTTTTTCGGATGCATCCACCTCCAGCTCTACGAAAGGCGAATCGCTCAAGGATACCATTTCCATGGTGGGCAACTATGCCGATCTGATTATTATGCGCCACTATCTGGAAGGGGCGGCTCGTTATGCTTCGGAGGTAAGCCGTGTGCCGGTAGTCAACGCCGGCGATGGAGCCAACCAGCATCCTTCACAGACTTTATTGGATCTCTATTCCATTCGCAAAACACAGGGCACGCTGTATGACAGGACTATCGCTATGGTAGGGGATCTCAAGTATGGACGTACTATCCATTCTCTGATAGAGGGTATGTCGCACTTCCGCCCTCGTTTCATCTTCGTTGCTCCCGAAGAGCTGTCTCTTCCGGAAGAATACAAGCAGTTTTGTCGAGAGCATGATCTGCCTTATACGGAAACCAAACATTTCGACGAAGAGGTGATCAACAACTGCGACATTCTCTACATGACACGAGTACAACGTGAGCGGTTTACGGATCTGGAGGAATATGAACGGGTCAAAGATGTCTATGTGCTGACCAACGCTATGCTGTCCGACAGCCGTCCGAATCTGCGCGTACTGCATCCGCTACCTCGTGTGGGGGAGATTGCCTATGATGTGGATGACAATCCCAAAGCCTACTTTATCCGGCAAGCACTGAACGGGCTTTATACGAGGCAGTCCATCATTTGTGAAGTGCTCGGCATAGACGTTGCAAAC","5.90","-6.00","34703","MKHIVSIDQCSAEDILRILDRAELFEKNPNRHLLEGKVVATLFFEPSTRTRLSFETAVNRLGGRIIGFSDASTSSSTKGESLKDTISMVGNYADLIIMRHYLEGAARYASEVSRVPVVNAGDGANQHPSQTLLDLYSIRKTQGTLYDRTIAMVGDLKYGRTIHSLIEGMSHFRPRFIFVAPEELSLPEEYKQFCREHDLPYTETKHFDEEVINNCDILYMTRVQRERFTDLEEYERVKDVYVLTNAMLSDSRPNLRVLHPLPRVGEIAYDVDDNPKAYFIRQALNGLYTRQSIICEVLGIDVAN","391580 392491","The regulatory subunit is PG0330.TIGR ID: PG0357","aspartate/ornithine carbamoyltransferase catalytic subunit (ATCase)","Cytoplasm","Residues 2 to 302 share 52% identity with sp|P96174|PYRB_VIBS2, an aspartate carbamoyltransferase catalytic chain (aspartate transcarbamylase) (ATCase) in Vibrio cholerae.Residues 2 to 302 share 50% identity with pir||DTECC, an aspartate carbamoyltransferase (EC 2.1.3.2) catalytic chain in Escherichia coli (strain K-12).Residues 2 to 302 share 51% identity with pir||A81238, an aspartate carbamoyltransferase (EC 2.1.3.2) catalytic chain NMA0168 in Neisseria meningitidis (group B strain MD58, group A strain Z2491).This same region has very strong identity to several additional bacterial aspartate carbamoyltransferase catalytic chain proteins of the same type.This sequence is similar to BT0742.","
InterPro
IPR002082
Family
Aspartate carbamoyltransferase, eukaryotic
PR00101\"[33-55]T\"[72-81]T\"[126-143]T\"[218-227]T\"[257-262]T\"[279-293]TATCASE
TIGR00670\"[2-299]Tasp_carb_tr
InterPro
IPR006130
Family
Aspartate/ornithine carbamoyltransferase
PR00100\"[43-62]T\"[127-138]T\"[253-262]T\"[263-286]TAOTCASE
PIRSF000416\"[2-304]TOCT_ATCase
PS00097\"[43-50]TCARBAMOYLTRANSFERASE
InterPro
IPR006131
Domain
Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region
PF00185\"[145-297]TOTCace
InterPro
IPR006132
Domain
Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding
PF02729\"[2-141]TOTCace_N
InterPro
IPR014695
Family
Aspartate carbamoyltransferase, bacterial/plant
PIRSF500169\"[2-301]TATCase
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.1370\"[127-285]TG3DSA:3.40.50.1370
PTHR11405\"[1-301]TPTHR11405
SSF53671\"[1-144]T\"[145-299]TSSF53671


","BeTs to 12 clades of COG0540COG name: Aspartate carbamoyltransferase, catalytic chainFunctional Class: FThe phylogenetic pattern of COG0540 is amtkyqvcebr-uj-------Number of proteins in this genome belonging to this COG is 1","***** IPB002029 (Aspartate and ornithine carbamoyltransferase family) with a combined E-value of 3e-41. IPB002029A 42-55 IPB002029B 75-99 IPB002029C 117-155 IPB002029D 251-273","Residues 61-299 are 48% similar to a (CARBAMOYLTRANSFERASE TRANSFERASE BIOSYNTHESIS ORNITHINE) protein domain (PD000708) which is seen in PYRB_PYRAB.Residues 1-58 are 54% similar to a (CARBAMOYLTRANSFERASE TRANSFERASE BIOSYNTHESIS ORNITHINE) protein domain (PD000765) which is seen in PYRB_METJA.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Tue Mar 26 15:23:47 2002","Thu Apr 26 13:48:24 MDT 2001","Wed Dec 3 09:09:58 2003","Tue Mar 26 15:23:47 2002","Thu Feb 22 13:25:31 MST 2001","Thu Feb 22 13:25:31 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 22 13:25:31 MST 2001","-71% similar to PDB:2BE7 Crystal structure of the unliganded (T-state) aspartate transcarbamoylase of the psychrophilic bacterium Moritella profunda (E_value = 1.8E_80);-70% similar to PDB:1D09 ASPARTATE TRANSCARBAMOYLASE COMPLEXED WITH N-PHOSPHONACETYL-L-ASPARTATE (PALA) (E_value = 2.9E_78);-70% similar to PDB:1EKX THE ISOLATED, UNREGULATED CATALYTIC TRIMER OF ASPARTATE TRANSCARBAMOYLASE COMPLEXED WITH BISUBSTRATE ANALOG PALA (N-(PHOSPHONACETYL)-L-ASPARTATE) (E_value = 6.5E_78);-70% similar to PDB:1Q95 Aspartate Transcarbamylase (ATCase) of Escherichia coli: A New Crystalline R State Bound to PALA, or to Product Analogues Phosphate and Citrate (E_value = 6.5E_78);-70% similar to PDB:1R0B Aspartate Transcarbamylase (ATCase) of Escherichia coli: A New Crystalline R State Bound to PALA, or to Product Analogues Phosphate and Citrate (E_value = 6.5E_78);","","","Residues 2 to 142 (E-value = 1.4e-50) place PG0329 in the OTCace_N family which is described as Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain (PF02729)Residues 145 to 298 (E-value = 4.3e-37) place PG0329 in the OTCace family which is described as Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain (PF00185)","Wed Dec 3 09:09:58 2003","34540189","","","","","","1","","","PG0357" "PG0330","392507","392959","453","ATGAAAAAGGAAGAAATGCTCGTCGCCGCGATTAGAAACGGCATCGTGATAGACCATATCCCCCCGACGAAACTGTTCAAGGTGGCTACTCTCCTGCAACTGGATGATTTGGACAAGCGGATCACCATCGGCAACAATTTGCGCAGTCGGAGCCATGGTTCGAAAGGAGTTATCAAGATAGAGGACAAGACTTTCGAAGAGGAGGAATTGAACCGCATCGCTCTTATTGCCCCGAATGTGCGCCTGAACATTATTCGGGACTATGAAGTTGTAGAAAAACGTCAGGTGGAAGTACCACACGAGATTGTGGGTCTCGTCCGTTGTCCGAATCCGAAGTGTATTACGAACAACGAACCGATGCAAACCCGATTCCGTGTGATAGATGCCGAGCAGTGCACCCTTCGATGCGACTACTGCGAGCGAAAACTAGCCGGTGACCGCATCGAGTTGCTA","7.70","1.49","17385","MKKEEMLVAAIRNGIVIDHIPPTKLFKVATLLQLDDLDKRITIGNNLRSRSHGSKGVIKIEDKTFEEEELNRIALIAPNVRLNIIRDYEVVEKRQVEVPHEIVGLVRCPNPKCITNNEPMQTRFRVIDAEQCTLRCDYCERKLAGDRIELL","392507 392959","The catalytic subunit is PG0329, immediately upstream.TIGR ID: PG0358","aspartate carbamoyltransferase regulatory subunit","Cytoplasm","Residues 5 to 148 share 47% identity with gb|AAB62985.1|, an aspartate carbamoyltransferase regulatory subunit in Pyrococcus abyssi.Residues 1 to 149 share 45% identity with gb|AAB85348.1| (AE000861), an aspartate carbamoyltransferase regulatory subunitin Methanothermobacter thermautotrophicus.Residues 5 to 148 share 45% identity with dbj|BAA29812.1| (AP000003), a 152aa long hypothetical aspartate carbamoyltransferase regulatory chain in Pyrococcus horikoshii.This same region shares a similar degree of identity with aspartate carbamoyltransferase regulatory subunits in several other bacterial species.","
InterPro
IPR002801
Family
Aspartate transcarbamylase regulatory subunit
PD006194\"[8-99]TPyrI
G3DSA:2.30.30.20\"[100-151]TPyrI
G3DSA:3.30.70.140\"[1-99]TPyrI
PF01948\"[1-98]TPyrI
PF02748\"[100-150]TPyrI_C
TIGR00240\"[3-151]TATCase_reg
InterPro
IPR011069
Domain
Aspartate carbamoyltransferase, regulatory chain, C-terminal
SSF57825\"[100-151]TAsp_transf_reg_C
noIPR
unintegrated
unintegrated
SSF54893\"[1-99]TSSF54893


","BeTs to 6 clades of COG1781COG name: Aspartate carbamoyltransferase regulatory subunitFunctional Class: FThe phylogenetic pattern of COG1781 is amtk--v-e------------Number of proteins in this genome belonging to this COG is 1","***** PF01948 (Aspartate carbamoyltransferase regulatory chain) with a combined E-value of 2e-50. PF01948A 5-23 PF01948B 40-84 PF01948C 85-119 PF01948D 120-141","Residues 5-143 are 48% similar to a (ASPARTATE CARBAMOYLTRANSFERASE REGULATORY) protein domain (PD006194) which is seen in PYRI_PYRAB.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Tue Mar 26 15:25:22 2002","Thu Apr 26 13:50:10 MDT 2001","Thu Feb 22 13:42:32 MST 2001","Tue Mar 26 15:24:47 2002","Thu Feb 22 13:42:32 MST 2001","Thu Feb 22 13:42:32 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 22 13:42:32 MST 2001","-66% similar to PDB:1PG5 CRYSTAL STRUCTURE OF THE UNLIGATED (T-STATE) ASPARTATE TRANSCARBAMOYLASE FROM THE EXTREMELY THERMOPHILIC ARCHAEON SULFOLOBUS ACIDOCALDARIUS (E_value = 3.3E_28);-66% similar to PDB:2BE9 Crystal structure of the CTP-liganded (T-State) aspartate transcarbamoylase from the extremely thermophilic archaeon Sulfolobus acidocaldarius (E_value = 3.3E_28);-61% similar to PDB:2BE7 Crystal structure of the unliganded (T-state) aspartate transcarbamoylase of the psychrophilic bacterium Moritella profunda (E_value = 4.8E_27);-62% similar to PDB:2ATC CRYSTAL AND MOLECULAR STRUCTURES OF NATIVE AND CTP-LIGANDED ASPARTATE CARBAMOYLTRANSFERASE FROM ESCHERICHIA COLI (E_value = 9.0E_26);-62% similar to PDB:1D09 ASPARTATE TRANSCARBAMOYLASE COMPLEXED WITH N-PHOSPHONACETYL-L-ASPARTATE (PALA) (E_value = 2.6E_25);","","","Residues 1 to 98 (E-value = 1.9e-35) place PG0330 in the PyrI family which is described as Aspartate carbamoyltransferase regulatory chain, allosteric domain (PF01948)Residues 100 to 150 (E-value = 1e-11) place PG0330 in the PyrI_C family which is described as Aspartate carbamoyltransferase regulatory chain, metal binding domain (PF02748)","Fri Mar 9 15:51:05 MST 2001","34540190","","","","","","1","","","PG0358" "PG0331","392991","393575","585","ATGAGACAAGATTGGAAACCCGGCACACTTATCTATCCGCTACCGGCCATATTGGTGAGTTGTGGCTCCCGGCCGGAGGATTATAATTTGCTTACGGCCAGTTGGGTGGGGACGATATGCAGCCAGCCGCCTATGTGCTATGTCAGTATTCGCCCGGAGCGTCACTCCTATGCTCTCATCAAAGAGAGTGGCGAGTTCGGTTTGAACCTGACTACGGTCGGCATGGCCAGACAGACGGACTGGTGCGGTGTCCGTTCGGGCAAGGACTATGACAAGTTTGCCGAGACAGGCCTTACCGTGGAGCCGGCCAAGCTGATCAAAGCTCCTTTGGTGGCCGAATCGCCGGTCAGCATAGAGTGCAAGGTACGACAGGTCATTCCACTCGGTAGCCATGACATGTTTATGGCCGATGTGGTCAATATCCGTGCCGACGAACAATATATCAACCCGGAGACAGGTTCTTTCGATATGGAGAAAGCAAACCTGCTGGCATATTCGCATGGCGAATACTTCTCGCTTGGGGACTTTCTCGGCTATTTCGGCTGGTCGGTCAAGAAAGACAAAACGCCTGTCAGACGTCGTAAG","7.30","0.48","21862","MRQDWKPGTLIYPLPAILVSCGSRPEDYNLLTASWVGTICSQPPMCYVSIRPERHSYALIKESGEFGLNLTTVGMARQTDWCGVRSGKDYDKFAETGLTVEPAKLIKAPLVAESPVSIECKVRQVIPLGSHDMFMADVVNIRADEQYINPETGSFDMEKANLLAYSHGEYFSLGDFLGYFGWSVKKDKTPVRRRK","392940 393575","TIGR ID: PG0359","conserved hypothetical protein (possible flavoredoxin)","Periplasm, Cytoplasm","Residues 10-178 share 34% identity with gb|AAF82037.1|AF225976_1 (AF225976), a flavoredoxin in Desulfovibrio gigas. Also other weak hits to hypothetical proteins, e.g. residues 11-172 are 27% similar to (AE000979) of Archaeoglobus fulgidus.","
InterPro
IPR002563
Domain
Flavin reductase-like, FMN-binding
PF01613\"[11-158]TFlavin_Reduct
InterPro
IPR009002
Domain
FMN-binding split barrel, related
SSF50475\"[1-175]TFMN_binding
InterPro
IPR012349
Domain
FMN-binding split barrel
G3DSA:2.30.110.10\"[10-181]TPNPOx_FMN_bd
noIPR
unintegrated
unintegrated
PS51257\"[1-21]TPROKAR_LIPOPROTEIN


","BeTs to 9 clades of COG1853COG name: Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB familyFunctional Class: RThe phylogenetic pattern of COG1853 is A-Tk-qVCEBR---------xNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 13-141 are 29% similar to a (PROTEIN MONOOXYGENASE OXIDOREDUCTASE) protein domain (PD002643) which is seen in O28488_ARCFU.","","Thu Jun 14 10:45:59 MDT 2001","","Thu Jun 14 10:45:59 MDT 2001","Thu Jun 14 10:45:59 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 10:45:59 MDT 2001","Thu Jun 14 10:45:59 MDT 2001","","","Thu Feb 22 13:48:54 MST 2001","Wed Jun 20 13:14:40 MDT 2001","Thu Jun 14 10:45:59 MDT 2001","","Wed Jun 20 13:14:40 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 22 13:48:54 MST 2001","-56% similar to PDB:2D5M Flavoredoxin of Desulfovibrio vulgaris (Miyazaki F) (E_value = 1.5E_27);","","","Residues 11 to 158 (E-value = 6.2e-07) place PG0331 in the Flavin_Reduct family which is described as Flavin reductase like domain (PF01613)","Wed Jun 20 13:14:40 MDT 2001","34540191","","","","","","1","","","PG0359" "PG0332","393622","394209","588","ATGAAAAAAGGAACAGTAATCATCATTGCCATTATTGCAGTTTTTGTCCTGCTATTTAGCTGGGGTGTGCTCAAATACAACGGCTTCGTGGACAAGCAGGAAGCCGTCAATACGGCTTGGAGTCAAGTGGAAAACCAATATCAACGTCGTTTGGACTTGATCCCGAATCTCGTAGAGACCGTCAAAGGCTATGCTGCTCACGAGAGCGAAACGCTTACTGCCGTGATCGAAGCACGTAGCAAAGCCACTGCTGCGAATATCAATGCCGACAATCTGACGGAAGAGAACTTGGCTAAGTTTCAGCAGTCACAGGATCAGCTATCGAGTGCCTTGTCCCGTTTGATGGTCGTAGTGGAGCGTTACCCCGATCTCAAGGCTAACCAGAATTTCCGCGATCTGCAAGTGCAACTTGAGGGTACGGAAAACAGAATCACGGTAGCACGTCAGGACTTCAATGCCATAGCCAAGACATATAACGTGGCTGTGCGCAGATTCCCGGCCAATATCATTGCGGGTATGATGAATTTCGATCAGCGTCCCTACTTCAAGGCTGATGAGGGTGCAGAGAAAGCCCCTCAGGTAAAATTC","9.00","1.24","22102","MKKGTVIIIAIIAVFVLLFSWGVLKYNGFVDKQEAVNTAWSQVENQYQRRLDLIPNLVETVKGYAAHESETLTAVIEARSKATAANINADNLTEENLAKFQQSQDQLSSALSRLMVVVERYPDLKANQNFRDLQVQLEGTENRITVARQDFNAIAKTYNVAVRRFPANIIAGMMNFDQRPYFKADEGAEKAPQVKF","393616 394209","TIGR ID: PG0360","conserved hypothetical protein","Periplasm, Cytoplasm","Residues 3-196 share 49% identity with gb|AAC65544.1| (AE001232), the Tp70 protein in Treponema pallidum.Residues 1-196 share 44% identity with gb|AAD36040.1|AE001759_4 (AE001759), the lemA protein in Thermotoga maritima.Residues 4-196 share 41% identity with gb|AAC44350.1| (U66186), the LemA protein in Listeria monocytogenes.This same region shares identity with several other lemA genes and conserved proteins bacterial genera.","
InterPro
IPR007156
Family
LemA
PF04011\"[3-196]TLemA


","BeTs to 3 clades of COG1704COG name: Uncharacterized ACR, LemA familyFunctional Class: SThe phylogenetic pattern of COG1704 is -m----v----------l---Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 26-196 are 49% similar to a (PROTEIN TP70 LEMA MJ1576 TRANSMEMBRANE GYRB 5'REGION) protein domain (PD022603) which is seen in O83581_TREPA.","","Thu Jun 14 10:46:20 MDT 2001","","Thu Jun 14 10:46:20 MDT 2001","Thu Jun 14 10:46:20 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 10:46:20 MDT 2001","Thu Jun 14 10:46:20 MDT 2001","","","Thu Feb 22 14:08:14 MST 2001","Wed Jun 20 13:18:47 MDT 2001","Thu Jun 14 10:46:20 MDT 2001","","Wed Jun 20 13:18:47 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 22 13:58:26 MST 2001","-60% similar to PDB:2ETD Crystal structure of LEMA protein (tm0961) from THERMOTOGA MARITIMA at 2.28 A resolution (E_value = 2.0E_35);-54% similar to PDB:1ORG The crystal structure of a pheromone binding protein from the cockroach Leucophaea maderae reveals a new mechanism of pheromone binding (E_value = 2.0E_35);-54% similar to PDB:1OW4 Crystal structure of a pheromone binding protein from the cockroach Leucophaea maderae in complex with the fluorescent reporter ANS (1-anilinonaphtalene-8-sulfonic acid), (E_value = 2.0E_35);-54% similar to PDB:1P28 The crystal structure of a pheromone binding protein from the cockroach Leucophaea maderae in complex with a component of the pheromonal blend: 3-hydroxy-butan-2-one. (E_value = 2.0E_35);","","","Residues 3 to 196 (E-value = 1.6e-100) place PG0332 in the LemA family which is described as LemA family (PF04011)","Wed Jun 20 13:18:47 MDT 2001","34540192","","","","","","1","","","PG0360" "PG0333","394234","395538","1305","ATGATGCGTTCATCAAAGATCGGGTTTCGGAGCCTTGCAGTGTGGCCTTTTTCCCTAACGGCCTTTTTCTTCTTTCTGCTGCATCCATGTGTATCGGCGCAACGGGTATATAAGCCGGAAGATGTACCTAACGTCCAACTTGCCGATAGCACTCGACTCGTGACGGACGAAGCAGGCTTGCTCAGCAATGCACAGGAGGAGGTGATGAACGGACGGCTGCGAGCCATCCGCAGCAGTCATGCCGTTGAGTTTGCCGTCGTTACTCTTCCGTCTATCGGTGATGCTCCATTGGAGGATTTTACCTTGAAGCTGGCACGTCAATGGGGAGTCGGTAATGAAAAGAACAACAACGGCCTCCTGCTCGTACTCGTGCTGGATCAGCGGCGGGTACGCTTTGAGACGGGCTATGGTCTGGAAGGTTACTTGCCCGATGGTCTGCTGAGCCGTATCATACATGATCGCATGATCCCTCATTTTCGATCGGGGAACTATGCCGAAGGTTTGTCCGAGGGAGTTCTTGCCGTTCAGCAGGTATTGGACGGATCCTATGATGTGAAGCCTGACGGAGGAGATCGGTCTGCTGTTTCCAGAGTGAGCTGGGGTACCATATTTATATTCTATTGCTTCTTTATGCTCCTCGCTTCGGCCTCGGTACTCTATCAGCTGACTTCATATCGCAGGCAATATCCACGAGCAACGGCAGTGGAGGAATATGAATTCCTTCGCAGGCGAATATCGATGCTGGGATGTGTCTTTTTGCTACTTTTCCCTCCGGGATTTATTGTGGTGATGGCCATCATCAAATCGCGACAGAACAAACTGAAGAAAGAGATGGCTGTGTGTCCGTGCTGCCATCAGCATTCGGTACATCTGCTCGATCAAAGTTTGGAGGAAGATCGTTATCTCAGTCCCTCTCAGCAGATGGAGCATAAACTCAAGAGTCGGGACTTCAGAGTCTATGCTTGCTCTTCCTGCGACCATACACAGATAATAGGTTACGATCATCCGGGGACATCGTACAAGCGGTGTCCAAACTGTGGAACGGTTGCCCTGCGTTACATGGGAGAGAAGCGTGTGCGTACCGATAGAGGGATGATGATCCGCAAGGAATGGCGCTGTCTGTACTGCGGAGAGAATCATACCCAAGAGTACCGAGACAATAATGATGCTGAAGCCGCTGCTACAGGTATCCTGCTGGGTTCGCTACTTGGTCGTGGAGGCCGTAGTGGAGGGTTCGGAGGTGGTTTTGGCGGCGGTGGCTTCGGTGGAGGTAGCTTCGGCGGCGGTGGAGCCTCCGGTGGCTGG","8.40","9.10","48375","MMRSSKIGFRSLAVWPFSLTAFFFFLLHPCVSAQRVYKPEDVPNVQLADSTRLVTDEAGLLSNAQEEVMNGRLRAIRSSHAVEFAVVTLPSIGDAPLEDFTLKLARQWGVGNEKNNNGLLLVLVLDQRRVRFETGYGLEGYLPDGLLSRIIHDRMIPHFRSGNYAEGLSEGVLAVQQVLDGSYDVKPDGGDRSAVSRVSWGTIFIFYCFFMLLASASVLYQLTSYRRQYPRATAVEEYEFLRRRISMLGCVFLLLFPPGFIVVMAIIKSRQNKLKKEMAVCPCCHQHSVHLLDQSLEEDRYLSPSQQMEHKLKSRDFRVYACSSCDHTQIIGYDHPGTSYKRCPNCGTVALRYMGEKRVRTDRGMMIRKEWRCLYCGENHTQEYRDNNDAEAAATGILLGSLLGRGGRSGGFGGGFGGGGFGGGSFGGGGASGGW","394228 395538 [Shorter 439 143 96]","TIGR ID: PG0361","conserved hypothetical protein","Inner membrane, Extracellular","Numerous weak hits in gapped BLAST; e.g. residues 54-181 are 35% similar to gb|AAG04839.1|AE004574_10 conserved hypothetical protein of Pseudomonas aeruginosa, residues 41-194 are 29% similar to gb|AAG03925.1|AE004490_5 hypothetical protein of Pseudomonas aeruginosa, residues 52-211 are 28% similar to gb|AAD36041.1|AE001759_5 conserved hypothetical protein of Thermotoga maritima.","
InterPro
IPR007621
Family
Protein of unknown function DUF477
PF04536\"[59-182]TDUF477
noIPR
unintegrated
unintegrated
SSF57783\"[332-383]TSSF57783


","BeTs to 3 clades of COG1512COG name: Uncharacterized ACRFunctional Class: SThe phylogenetic pattern of COG1512 is ------vce--------l---Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 82-184 are 29% similar to a (PROTEIN CONSERVED CYSJ-ENO INTERGENIC) protein domain (PD155953) which is seen in O83572_TREPA.","","Thu Jun 14 10:46:40 MDT 2001","","Thu Jun 14 10:46:40 MDT 2001","Thu Jun 14 10:46:40 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 10:46:40 MDT 2001","Thu Jun 14 10:46:40 MDT 2001","","","Wed Feb 21 17:39:50 MST 2001","Wed Jun 20 13:22:47 MDT 2001","Tue Mar 27 10:57:38 MST 2001","","Wed Jun 20 13:22:47 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Feb 21 17:39:50 MST 2001","-40% similar to PDB:2I13 Aart, a six finger zinc finger designed to recognize ANN triplets (E_value = );-63% similar to PDB:1TG6 Crystallography and mutagenesis point to an essential role for the N-terminus of human mitochondrial ClpP (E_value = );-47% similar to PDB:1YUX Mixed valant state of nigerythrin (E_value = );-47% similar to PDB:1YUZ Partially Reduced State of Nigerythrin (E_value = );-47% similar to PDB:1YV1 Fully reduced state of nigerythrin (all ferrous) (E_value = );","","","Residues 59 to 182 (E-value = 4.8e-42) place PG0333 in the DUF477 family which is described as Domain of unknown function (DUF477) (PF04536)","Wed Jun 20 13:22:47 MDT 2001","34540193","","","","","","1","","","PG0361" "PG0334","395441","397606","2166","TTGGTCGTGGAGGCCGTAGTGGAGGGTTCGGAGGTGGTTTTGGCGGCGGTGGCTTCGGTGGAGGTAGCTTCGGCGGCGGTGGAGCCTCCGGTGGCTGGTAATGTGACTATGTTGATGGCTGGAAGTATCAGGAGAATTGTTTGTGCTGTGGTATCGCTGTGGTTTGCAGTGATTCCCGTTCTTGCACAACATGATTATCAGTTTGATTTCGAAGGCAAGGAGGTAAAGGAACCTACCGAAGAAGAGCAGATCGCTCGGGGGGATAAACTCAAGGTCTATACGTTGAATCCCAATACGGGCGATCTCTTGCGCTCTCACATCGATACGGCTATGCTCGGTTTCTACAATCGAGTGAAAGCCGAAGGACGTTCGCTTGCCATCGGTTATTTGGGCAATCTGAACTCTCCGTGGGAGAGCAAGATGTTCTTCGATCGTCCGCTCTATCATCCGCAGTTCATGTATATGTACGGGCTTCACGGTATGCTGATAGATCCTTTTACAGCCCGATTCTACGATACCAAGAGTCCTACCACTCAGGTGCTCTATCTCCGGCATGGCGACAATCAGACGCGAGAGGAAGAGCTGCGTTCTACTTTGGCTTTGAATATAGGCAAGCGAGTCAACATTGGTAACGATGTGGATTATATCTACAGCAACGGTTTCTACAACTCCAACAAGACGAAAGCCATCTCCTACCGTTTCTTCGGCAGCTACCGTTCCGACCGTTACGAAGCCTATGCTTATGTGGGCAACAATTACTATCTGATGACGGAGAATGGGGGGATTACGAATGATGACTACGTGATCCATCCGGGTAATTTTGCCAATGGAACGAACGAATTCGTATCGACGGATATTCCGGTGAAGTTTCCCGGCAATAATATGTTCAATTCGCTTCGGCAAGGAACGGCTCGTCTGACCCATCGCTACAACCTCGGTTTCTATCGTGAGGGACAGACCGAGTATTATGATGGCAATGAATTCGAGGCTCCTCATTTGATCGATACGATGGTATTCGTGCCCGTGGGTAGTATTTCCCACACTTTCAATTATACCAAAAGTCGCCGTCGCTTCAAGGTCAAGAATCCTTTGGACAATTCGATTTATCCCAATCTGTTTATCAAACGACTGAATGATGCCGGAGAGATGATCACGCTGCCGAACGACACCACTCGTATGGAAGAGTACCACAATACGCTGGCTCTTTCTTTGCGGGAAGGTTTCCATCGCTGGGCTAAGTTCGGCCTGACGGCTTATGTCAGGTTGGAGAATAGGTTTTATACGCTACAAGATTCAGTAGTCGGTGTACCCCCTACGGACAGGGAGTTCAGCACTTATGTCGGGGGAGAGATCAGCCGACGAGGGGGGAAATATCTCAACTTTGCAGCCGATGGAGAGCTTTCGGTCGTCGGGAGCGATGCCGGAGCATTCAAACTCAGAGGACGATTAAGTACAGCGTTCGATCTCCTTCGTCGGAAGACGGAAATGGAAGCTTGGGGGCAACTTCTCAATACTCGTCCGGGCTACTTTCTGCGTCATCATCATGGTACTGTGCACTGGTGGGACGAATCGTTCGATTTCATCCAGCAACTCAGATTGGGTGGCTCTCTTCGTCTGAAGGACTGGGGTACGACCTTGACGTTGCAATCCGCTACGCTCAAGAACTATATATATTTCGACCATACGGCTTTCCCCCAACAGGTCTCTTCTCCCATACAAGTCCTCGAAGGGCGGATAGCACATGCCTACCGATGGGGTGCTTTGGGATGGGAAGTGGAAGCGGCTTATCAAACAAGTAGCAACCGTACGGCTTTGCCTTTACCGAAGCTGGCGGCTTATGGCAATCTCTATTTGGACTTCCGTCTGCCGAGCAGTACCAAGGTGATGCGTATACAGACGGGAGTGGATGCTCGCATTCATTCCTCCTACTATGCTCCGTATTATGAACCCGCCGTACAGCAATTCACCACGCAACAAGAGATAAAGGTGGGAGGGTCTTTCCCTCTGATGAATGCTTATGTGAATATCCACCTCAAGCGCTCACGTTTCTTCTTTGAAATGTACAATCTGGCTGAGGCTTTCATGGATAGCAAGCGTTTCTCTTTGGTGCATACGCCGTACAACCCTCGTGGTCTGCGTATGGGTATTGCCATCGACTTCAATAAA","9.20","7.82","82418","LVVEAVVEGSEVVLAAVASVEVASAAVEPPVAGNVTMLMAGSIRRIVCAVVSLWFAVIPVLAQHDYQFDFEGKEVKEPTEEEQIARGDKLKVYTLNPNTGDLLRSHIDTAMLGFYNRVKAEGRSLAIGYLGNLNSPWESKMFFDRPLYHPQFMYMYGLHGMLIDPFTARFYDTKSPTTQVLYLRHGDNQTREEELRSTLALNIGKRVNIGNDVDYIYSNGFYNSNKTKAISYRFFGSYRSDRYEAYAYVGNNYYLMTENGGITNDDYVIHPGNFANGTNEFVSTDIPVKFPGNNMFNSLRQGTARLTHRYNLGFYREGQTEYYDGNEFEAPHLIDTMVFVPVGSISHTFNYTKSRRRFKVKNPLDNSIYPNLFIKRLNDAGEMITLPNDTTRMEEYHNTLALSLREGFHRWAKFGLTAYVRLENRFYTLQDSVVGVPPTDREFSTYVGGEISRRGGKYLNFAADGELSVVGSDAGAFKLRGRLSTAFDLLRRKTEMEAWGQLLNTRPGYFLRHHHGTVHWWDESFDFIQQLRLGGSLRLKDWGTTLTLQSATLKNYIYFDHTAFPQQVSSPIQVLEGRIAHAYRWGALGWEVEAAYQTSSNRTALPLPKLAAYGNLYLDFRLPSSTKVMRIQTGVDARIHSSYYAPYYEPAVQQFTTQQEIKVGGSFPLMNAYVNIHLKRSRFFFEMYNLAEAFMDSKRFSLVHTPYNPRGLRMGIAIDFNK","395396 397606 [Bad Olap 438 143 3]","TIGR ID: PG0362","hypothetical protein","Outer membrane, Inner membrane, Cytoplasm","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-25]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 10:47:05 MDT 2001","","Thu Jun 14 10:47:05 MDT 2001","Thu Jun 14 10:47:05 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 10:47:05 MDT 2001","Thu Jun 14 10:47:05 MDT 2001","","","Thu Feb 15 15:37:50 MST 2001","","Thu Feb 15 15:37:50 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 15 15:37:50 MST 2001","-66% similar to PDB:1AQ3 BACTERIOPHAGE MS2 CAPSID PROTEIN/RNA COMPLEX (E_value = );-66% similar to PDB:1AQ4 STRUCTURE OF A MS2 COAT PROTEIN MUTANT IN COMPLEX WITH AN RNA OPERATOR (E_value = );-66% similar to PDB:1BMS CRYSTAL STRUCTURE OF MS2 CAPSIDS WITH MUTATIONS IN THE SUBUNIT FG LOOP (E_value = );-66% similar to PDB:1KUO Ms2-RNA Hairpin (C-10) Complex (E_value = );-66% similar to PDB:1MSC CRYSTAL STRUCTURE OF MS2 COAT PROTEIN DIMER (E_value = );","","","No significant hits to the Pfam 11.0 database","Thu Jun 14 10:47:05 MDT 2001","34540194","","","","","","1","","","PG0362" "PG0335","397610","398434","825","ATGGAAATGAAGAAACAGATTGCTCTCTACGGCGTTTTACTGATCTCTGTCCTTATCGTGATGGTTGCTTTGCGCCACTGTGGTGGAGGAGGGGCTGCCGGTGGGGACGCTGTCGATTCGTTGCGTGATTATCCTGATATTCACCGAGAAGGAGTGCTGAGGATCATTGCCCGATACAATGACAGAGACTATTATGTGGGACAGGATTCCACCGCCGGTTTTGTTTACGATGTAGCACGTCGTTTATCGGAAATCAGTGGCATTCGGATAGAAATCGGTCTGGAAAAGAATTGGAAAGAGAGCCTTGAAAGGTTGCGACGGGGTGCATGCGACATCATTGCACAGGACATTCCGCTGACGGCTGTAACGGACACCGTCCACTACCGCTTTCTTCGTCCGATACACCTTGGACGGCTTTATCTGGTACAACGTCGATCCGATACTGCTCTGATTCGTCGCCAGATCGATTTGTCCGGACGGACGGTGACCATTCCGGAAGGCTCTCCGGCGAGGTTGTTCGTCAAACACCTGTCCGAGGAAATCGGGGATAGTATATATATACGAACCGATCCCACTTATTCTGCAGAGCAGTTGGCCATGATGGTGGCATCGGACGACATCGATCTGACCGTCTGTAACCAACATGAAGCTAAGAAGCTGGGGCAACTCCTCCCTGCGTTGGACTGCAGTGTACCGCTCTCTTTCGAACTGCGACAGGCATGGTTGGTGCGCCGAAGTGCAACCTCCTTGCAGGACAGTCTCAATAGTTGGTTCGATCGGCTTCGCTTGTCAGGCGAATTGGAGCGGCTTTACGATCGTTACCAT","7.20","0.51","31176","MEMKKQIALYGVLLISVLIVMVALRHCGGGGAAGGDAVDSLRDYPDIHREGVLRIIARYNDRDYYVGQDSTAGFVYDVARRLSEISGIRIEIGLEKNWKESLERLRRGACDIIAQDIPLTAVTDTVHYRFLRPIHLGRLYLVQRRSDTALIRRQIDLSGRTVTIPEGSPARLFVKHLSEEIGDSIYIRTDPTYSAEQLAMMVASDDIDLTVCNQHEAKKLGQLLPALDCSVPLSFELRQAWLVRRSATSLQDSLNSWFDRLRLSGELERLYDRYH","397610 398434","TIGR ID: PG0363","conserved hypothetical protein; possible amino acid-binding periplasmic protein","Cytoplasm, Periplasm","Its nearest neighbor in the NR database is gi:53712933 from Bacteroides fragilis YCH46.","
noIPR
unintegrated
unintegrated
PTHR21666\"[155-213]TPTHR21666
PTHR21666:SF11\"[155-213]TPTHR21666:SF11
SSF53850\"[48-274]TSSF53850


","BeTs to 4 clades of COG0834COG name: Periplasmic amino acid binding proteinsFunctional Class: EThe phylogenetic pattern of COG0834 is A-----VCEBrHUJ---LINxNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Mar 1 16:16:58 2005","Tue Mar 1 16:16:58 2005","Fri Mar 9 16:34:23 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 53-274 are 25% similar to PG1083, a conserved hypothetical protein.","Tue Mar 27 11:07:52 MST 2001","Tue Mar 1 16:16:58 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Fri Mar 9 16:34:23 MST 2001","34540195","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Tue Mar 1 16:16:58 2005","","1","","","PG0363" "PG0336","399705","398503","1203","ATGACAGCCCTACCCTCCATCACGCTACTACCGAACAAAGAGGAATCCGTCAGACGATTCCATCCGTGGATCTTCTCCGGTGCCATAGCATCGATAAGCGGCAATCCTGCCGAAGGAGATCCGGTTCACATCTTTTCCTCCAAACACGAACCTCTCGGAGTCGGCCACTATGAGAAAGGAAGCATAGCCGTGCGGATGCTTTCCTTCGATGTCGATACGGTACTCGATGTCTCTTTCTGGGAAGAACGGCTCTCTGCCGCTTTCCGACTGCGTTCGGCTCTGGGGCTGATCCGCTACGATGATCCGAGATCAAAGAATACGGTCTATCGCTTGGTGCATGGAGAAGGAGATGGCCTTCCCGGCCTTATTATAGATGTATATGGACATACGGCCGTGATGCAGGCACACAGCGTAGGTATGCACCACGCACGAACGGATATAGCGAAGGCTCTTATAGCGACGACTGCAGGCTTGGTAGATGCCGTTTATTACAAGTCGGACAGTACTCTACCATTCAAAGCCGGACTGGAATCGGCCGATGGCTTCCTGATCGGTTCAGCACAAGCCGAAGCAGAGTACGAAAACGGACTTCTCTTCCTGCCCGACTGGATCAAAGGACAGAAGACGGGGTTCTTTATCGACCAGCGAGAGAACAGGGCCTTGCTGGAGGAGTATGCCTCCGGACGTAAGGTGCTCAATATGTTCTGCTATAGCGGTGGTTTCTCCCTGTATGCAATGAGAGGAGGAGCATACAAGGTACACTCGGTGGATAGCTCGGCCAGAGCCGTGCATCTGTTGGAGAAAAATATGGCACTGAATTTTGCCGGAGACGATCGTCACGAATCTTATGCCGCCGATGCTTTCCATTTCCTTGACGAGATGGCTGTCGGAGCTTATGATCTGATCGTACTGGATCCACCGGCTTTTGCCAAACATCGCAAAGTGCTGCGCAATGCGCTGATAGGTTACCGCAAACTGAATGCGGTAGCTTTTCGCAAGATTGCTCCGGGAGGCGTGCTCTTCACCTTCAGCTGTTCGCAAGCGGTCAGTCGGGAGGAATTCCGTTTGGCGGTCTTTACCGCAGCAGCATCGGCCGGCAGAAAGGTGCGAATACTGCATCAGCTTACCCAACCTGCCGATCACCCCATCAACATCTATCATCCGGAAGGCGAATACCTGAAAGGGCTTGTTCTCTACGTAGAA","7.10","1.02","44168","MTALPSITLLPNKEESVRRFHPWIFSGAIASISGNPAEGDPVHIFSSKHEPLGVGHYEKGSIAVRMLSFDVDTVLDVSFWEERLSAAFRLRSALGLIRYDDPRSKNTVYRLVHGEGDGLPGLIIDVYGHTAVMQAHSVGMHHARTDIAKALIATTAGLVDAVYYKSDSTLPFKAGLESADGFLIGSAQAEAEYENGLLFLPDWIKGQKTGFFIDQRENRALLEEYASGRKVLNMFCYSGGFSLYAMRGGAYKVHSVDSSARAVHLLEKNMALNFAGDDRHESYAADAFHFLDEMAVGAYDLIVLDPPAFAKHRKVLRNALIGYRKLNAVAFRKIAPGGVLFTFSCSQAVSREEFRLAVFTAAASAGRKVRILHQLTQPADHPINIYHPEGEYLKGLVLYVE","399771 398503","TIGR ID: PG0364","conserved hypothetical protein","Cytoplasm","Significant hits with gapped BLAST to conserved/hypothetical proteins; e.g. residues 7-400 are 35% similar to hypothetical protein (D90734) of E. coli, residues 21-401 are 35% similar to conserved hypothetical protein (AE001810) of Thermotoga maritima, residues 39-401 are 35% similar to hypothetical protein (U67605) of Methanococcus jannaschii.This sequence is similar to BT4331.","
InterPro
IPR002478
Domain
PUA
SM00359\"[5-89]TPUA
PS50890\"[4-78]TPUA
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.150\"[226-342]TG3DSA:3.40.50.150
PTHR18895\"[219-307]TPTHR18895
SSF53335\"[14-347]TSSF53335


","BeTs to 7 clades of COG1092COG name: Predicted SAM-dependent methyltransferasesFunctional Class: RThe phylogenetic pattern of COG1092 is -M-k-Qv-Eb-h------in-Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 248-380 are 27% similar to a (PROTEIN INTERGENIC REGION PYRD-PQIA) protein domain (PD030981) which is seen in YWBD_BACSU.Residues 108-245 are 39% similar to a (PROTEIN INTERGENIC REGION 396AA) protein domain (PD009723) which is seen in O59578_PYRHO.Residues 311-400 are 38% similar to a (HYPOTHETICAL 41.1 KD PROTEIN) protein domain (PD074510) which is seen in YCCW_ECOLI.Residues 249-340 are 32% similar to a (PROTEIN METHYLTRANSFERASE TRANSFERASE BIOSYNTHESIS) protein domain (PD000198) which is seen in O59578_PYRHO.","","Thu Jun 14 10:47:16 MDT 2001","","Thu Jun 14 10:47:16 MDT 2001","Thu Jun 14 10:47:16 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 10:47:16 MDT 2001","Thu Jun 14 10:47:16 MDT 2001","","","Wed Mar 22 11:44:03 MST 2000","Mon Jan 5 12:36:10 2004","Thu Jun 14 10:47:16 MDT 2001","Wed Apr 19 15:14:54 MDT 2000","Wed Jun 20 13:28:31 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Wed Apr 19 15:17:19 MDT 2000","Thu Jun 14 10:47:16 MDT 2001","-55% similar to PDB:2AS0 Crystal Structure of PH1915 (APC 5817): A Hypothetical RNA Methyltransferase (E_value = 7.1E_54);-54% similar to PDB:1WXW Crystal structure of Tt1595, a putative SAM-dependent methyltransferase from Thermus thermophillus HB8 (E_value = 7.3E_43);-54% similar to PDB:1WXX Crystal structure of Tt1595, a putative SAM-dependent methyltransferase from Thermus thermophillus HB8 (E_value = 7.3E_43);-54% similar to PDB:2CWW Crystal structure of Thermus thermophilus TTHA1280, a putative SAM-dependent RNA methyltransferase, in complex with S-adenosyl-L-homocysteine (E_value = 7.3E_43);-45% similar to PDB:2B78 A putative sam-dependent methyltransferase from Streptococcus mutans (E_value = 1.1E_22);","","","No significant hits to the Pfam 11.0 database","Wed Jun 20 13:28:31 MDT 2001","34540196","","","","","","1","","","PG0364" "PG0337","400268","399705","564","ATGGAGGCAGAGATATTCCCCGGCACGATCCACCTGATCGACAAACCCCAAGCCATCCCCGAAGCCATAAGGCTGCTATCGGCCAGTCGCACGATCGGCTTCGACACGGAGACCCGCCCTTCTTTCGTCCGTGGCGCCCGTCCGTCCGTAGCTCTGATGCAGATGTCCACAGAAACGGACTGCTTCCTCTTCCGACTCAATATGATAGATATACCGGAGGAACTGCAACAGCTACTGGAGAATCCCGGCATACTCAAGGTAGGACTGAGCCTGAGCGATGACATGACGGTGATCAGACGGCGCAAACCGATCGAACCGGCAGGATTCGTCGAGCTGCAACGGCTCTGCCCTGCATATGGCATCCGCGATGCCAGTCTCCAGAAGATATACGCCATCCTTTTCGGCAGACGCATCAGCAAATCCCAACGGCTCACCAACTGGGAGGCACGCACGCTGACCGCAGCCCAGCAGTCCTATGCCGCACTCGATGCCTGGGCTTGCCTGCGCATATTCAATCAGCTTATGACACTTCCCACCCCTACCCCTGTACAATTCGCCCTCTTA","8.40","2.10","21161","MEAEIFPGTIHLIDKPQAIPEAIRLLSASRTIGFDTETRPSFVRGARPSVALMQMSTETDCFLFRLNMIDIPEELQQLLENPGILKVGLSLSDDMTVIRRRKPIEPAGFVELQRLCPAYGIRDASLQKIYAILFGRRISKSQRLTNWEARTLTAAQQSYAALDAWACLRIFNQLMTLPTPTPVQFALL","400415 399705 [Bad Olap 443 68 3]","TIGR ID: PG0365","conserved hypothetical protein (possible exonuclease)","Cytoplasm, Extracellular","Numerous significant hits and several weak hits in gapped BLAST; e.g. residues 30-174 are 34% similar to gb|AAF54639.2| gene product of Drosophila melanogaster, residues 26-177 are 33% similar to sp|Q14191|WRN_HUMAN Werner syndrome helicase of Homo sapiens, residues 32-174 are 28% similar to emb|CAC14871.1| exonuclease of Arabidopsis thaliana.","
InterPro
IPR002562
Domain
3'-5' exonuclease
PF01612\"[10-178]T3_5_exonuc
SM00474\"[10-179]T35EXOc
InterPro
IPR012337
Domain
Polynucleotidyl transferase, Ribonuclease H fold
SSF53098\"[13-177]TRNaseH_fold
noIPR
unintegrated
unintegrated
G3DSA:3.30.420.10\"[4-175]TG3DSA:3.30.420.10
PTHR13620\"[32-180]TPTHR13620


","BeTs to 3 clades of COG0349COG name: Ribonuclease DFunctional Class: JThe phylogenetic pattern of COG0349 is ----y--ce-rh--------XNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 44-174 are 32% similar to a (PROTEIN DNA POLYMERASE HYDROLASE) protein domain (PD002549) which is seen in WRN_HUMAN.","","Thu Jun 14 10:47:40 MDT 2001","","Thu Jun 14 10:47:40 MDT 2001","Thu Jun 14 10:47:40 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 10:47:40 MDT 2001","Thu Jun 14 10:47:40 MDT 2001","","","Wed Feb 21 17:26:33 MST 2001","Wed Jun 20 13:31:20 MDT 2001","Tue Mar 27 11:21:50 MST 2001","","Wed Jun 20 13:31:20 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Feb 21 17:26:33 MST 2001","-51% similar to PDB:2FBT WRN exonuclease (E_value = 7.1E_14);-51% similar to PDB:2FBV WRN exonuclease, Mn complex (E_value = 7.1E_14);-51% similar to PDB:2FBX WRN exonuclease, Mg complex (E_value = 7.1E_14);-51% similar to PDB:2FBY WRN exonuclease, Eu complex (E_value = 7.1E_14);-51% similar to PDB:2FC0 WRN exonuclease, Mn dGMP complex (E_value = 7.1E_14);","","","Residues 10 to 178 (E-value = 1.4e-17) place PG0337 in the 3_5_exonuc family which is described as 3'-5' exonuclease (PF01612)","Wed Jun 20 13:31:20 MDT 2001","34540197","","","","","","1","","","PG0365" "PG0338","400905","400348","558","ATGAAAGAAACTAACGCGGGAAGCGTATATAGTCCGGAGTTGATAGAATTTGCCACAGTAGGCGTTGAGTTCTGCGCTCTCGTCGAACAGGCAGCAGCTCACCGAACTACGGATTTCATCGACAAAGCTTCCAAAGTACTGCCCCTTCTCTATCTCAAGACAGCTCTTTTACCTCCATACGAATACAGCGAAGAAGTGGACTTCGTGGAGGAATACATCACGGAAGAATCCTACGAACAGGTACGCTCTGCCGTAGAGTCACTGTTGGGGTCATACGACTCTTTCCTCGATGCGCGACACAGCGATATGCAATACAGCGACACTCCCGTAGGAGCAAGTATAGGGGAATGTTTGGCCGACGTATATCAGCAGGTGGGCAATCTGCTCGGAGTCGTACGCCAATCGAACGACAGAGCCATCCCTCAAGCCATCGGCCGCTGCCTCACCTACTTCGGCGAATACTGGGGCAATCGGCTCTTGGCTGCAGCCGGTGCTCTGCACGAGCTGCGGTACAGTGAGGTGTATAGGACTTGGGAAGAAGAGGAGAGGGCTGAAGAC","4.20","-18.40","20917","MKETNAGSVYSPELIEFATVGVEFCALVEQAAAHRTTDFIDKASKVLPLLYLKTALLPPYEYSEEVDFVEEYITEESYEQVRSAVESLLGSYDSFLDARHSDMQYSDTPVGASIGECLADVYQQVGNLLGVVRQSNDRAIPQAIGRCLTYFGEYWGNRLLAAAGALHELRYSEVYRTWEEEERAED","400905 400348 [Shorter 442 68 39]","TIGR ID: PG0366","conserved hypothetical protein","Cytoplasm","Its nearest neighbor in the NR database is gi:53712324 from Bacteroides fragilis YCH46.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Mar 2 10:29:42 2005","Wed Mar 2 10:29:42 2005","Thu Feb 15 15:40:01 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 15 15:40:01 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540198","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Wed Mar 2 10:29:42 2005","","1","","","PG0366" "PG0339","401385","403316","1932","ATGGAGCAAGAAAAACAGTTGCAGACAGAGTATATCGAGAGCGACATCAAGACGCTGGAATGGGACGAGCATATTCGCCGTCGTCCCGGGATGTATATCGGTAAGCTGGGCGATGGCACTCATGCCGATGACGGTATCTATGTGCTGCTGAAAGAGGTGCTGGACAACTCTGTGGACGAATTTGTCATGGGTGCCGGCAAGAGCATCGATATTACGATCGAGAATGGCACCGTTACCGTTCGTGACTACGGGCGCGGTATCCCCCTTGGCAAGCTGGTGGATGCCACTTGTAAGATGAATACGGGGGGCAAAATCGATTCCAAAGCTTTCAAGAAATCCGTCGGACTGAACGGTGTCGGCATCAAAGCTGTCAATGCTCTCTCCACCGAATTTGTCGTTACGGTATGGCGCGATGGACAAACCAAACGCGTACGGTACAGTCGTGCCGAACTCTTGGAGGAGACCGATCCTGTCCCTTCCGGTGAGCCTTCCGGTACTGAAGTGCGGTTTACGCCCGACGACAGTCTCTTCCGCAACTATCGGTATCAGGAGGAGTTCGTCGTTTCGATGATCAAGAACTATACTTTCCTGAATACGGGATTGTCATTCTTCTACAACGGGAAGAAATTCCTCAGTCGCAAAGGTTTGGAAGACCTTTTGGCTGAGAATATGACGGGCGATGCACTGTATCCGATCATTCACCTGAGCGATACGGATATTGAGATCGTCGTCACCCATACGCAGCAGTACGGCGATGAGTTCTACAGCTTTGTGAACGGTCAGAATACGACACAAGGGGGGACGCATCTGAGTGCTTTCCGTGAGGCCGTAGCCCGTACGATCAAAGAGTTCTACTCCAAGAATTTCGAATACAGCGACATTCGTAGCGGCATGGCCGCAGCTATCAGTATCAAAGTGGAAGAGCCTGTCTTCGAGAGTCAGACCAAGACCAAACTCGGTAGCCGTGACATGGGGCCGGATGGGCCTACGATACAAAAATTCGTGGGCGACTTCCTGAAGAAAGAACTGGACGACTATCTGCATATCCATACCGAAACGGCGGAGGAGATGCTGCGCAAGATCCAGCAGAGCGAACGCGAGCGCAAAGCAATGAGCGGCATCACCAAATTGGCACGCGAACGAGCTAAGAAATCCAATCTGCACAACAAAAAACTGCGTGACTGCACCGTCCACCTCAACGATCCCAAGGCGAAGGAACCGGAGCGTACCAGCATTTTCATCACCGAGGGTAATTCGGCCAGCGGCTCTATTACTACGTGTCGGGATGCCAACTATCAGGCCGTGTTCAGCCTGCGTGGTAAGCCGCTCAACTGTTTCGGCCTGACCAAGAAGGTAGTCTATGAGAACGAGGAGTTCAACCTCTTGCAGGCAGCTCTGAATATCGAGGAAGGGTTGGACGGCCTGCGCTACAATCGTGTGATCATTGCCACTGATGCCGATGATGATGGTATGCATATTCGCTTGCTGATCATCACTTTCTTTCTTCAGTTCTTCCCTGACCTTGTGCGCAAGGGGCATGTCTATGTCCTCGAAACGCCACTCTTCCGCGTTTTCCTTCCGCCCGAATCCAAAAAACAAACCTTCGGAGCCACCCCCAAACGCGGACGCAAGAAACAGGAGTCCGATATGCCTAAGCCGGTGACGGATATATACTGCTATAGTGAGGCCGAGAAGCAAGCCGCGCTGAAGCAGCTGGGCAAGAAAGCCGATGTCACGCGCTTCAAAGGATTGGGAGAAATCTCTCCGGAGCAATTCAAGGATTTGATCGACGAGGAGAATATCCGTCTCGAGCCGGTCAGCCTCAAGCGCGAGGATAAGATCAAGGAACTGCTCACTTTCTATATGGGAAAGAATACGAGCGAGCGTCAGGAGTTTATCATTGACAACTTAGTCGTGGATGAGGATGTGCTT","6.00","-7.50","73074","MEQEKQLQTEYIESDIKTLEWDEHIRRRPGMYIGKLGDGTHADDGIYVLLKEVLDNSVDEFVMGAGKSIDITIENGTVTVRDYGRGIPLGKLVDATCKMNTGGKIDSKAFKKSVGLNGVGIKAVNALSTEFVVTVWRDGQTKRVRYSRAELLEETDPVPSGEPSGTEVRFTPDDSLFRNYRYQEEFVVSMIKNYTFLNTGLSFFYNGKKFLSRKGLEDLLAENMTGDALYPIIHLSDTDIEIVVTHTQQYGDEFYSFVNGQNTTQGGTHLSAFREAVARTIKEFYSKNFEYSDIRSGMAAAISIKVEEPVFESQTKTKLGSRDMGPDGPTIQKFVGDFLKKELDDYLHIHTETAEEMLRKIQQSERERKAMSGITKLARERAKKSNLHNKKLRDCTVHLNDPKAKEPERTSIFITEGNSASGSITTCRDANYQAVFSLRGKPLNCFGLTKKVVYENEEFNLLQAALNIEEGLDGLRYNRVIIATDADDDGMHIRLLIITFFLQFFPDLVRKGHVYVLETPLFRVFLPPESKKQTFGATPKRGRKKQESDMPKPVTDIYCYSEAEKQAALKQLGKKADVTRFKGLGEISPEQFKDLIDEENIRLEPVSLKREDKIKELLTFYMGKNTSERQEFIIDNLVVDEDVL","401385 403316","PG1217 and PG1419 are both subunit A of DNA gyrase, while PG1483is another copy of subunit B.TIGR ID: PG0368","DNA gyrase subunit B (topoisomerase)","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 11-638 are 46% similar to gb|AAC66418.1| DNA topoisomerase IV of Borrelia burgdorferi, residues 8-640 are 43% similar to gb|AAF38923.1| DNA gyrase, subunit B of Chlamydia muridarum, residues 8-640 are 44% similar to gb|AAC68256.1| DNA Gyrase Subunit B of Chlamydia trachomatis.This sequence is similar to BT3033.","
InterPro
IPR001241
Domain
DNA topoisomerase, type IIA, subunit B or N-terminal
PR00418\"[45-60]T\"[79-92]T\"[114-128]T\"[256-269]T\"[412-426]T\"[474-490]T\"[492-509]T\"[512-524]T\"[578-594]TTPI2FAMILY
SM00433\"[45-638]TTOP2c
PS00177\"[414-422]?TOPOISOMERASE_II
InterPro
IPR003594
Domain
ATP-binding region, ATPase-like
G3DSA:3.30.565.10\"[8-210]TATP_bd_ATPase
PF02518\"[41-175]THATPase_c
SM00387\"[41-176]THATPase_c
SSF55874\"[10-210]TATP_bd_ATPase
InterPro
IPR011558
Domain
DNA topoisomerase, type IIA, subunit B, conserved region
PD149633\"[417-524]TDNA_gyrase_B
InterPro
IPR013506
Domain
DNA topoisomerase, type IIA, subunit B, region 2
PF00204\"[215-373]TDNA_gyraseB
InterPro
IPR013759
Domain
DNA topoisomerase, type IIA, subunit B or N-terminal, alpha-beta
G3DSA:3.40.50.670\"[376-601]TTopo_IIA_B/N_ab
InterPro
IPR013760
Domain
DNA topoisomerase, type IIA, central
SSF56719\"[383-635]TTopo_IIA_cen
InterPro
IPR014721
Domain
Ribosomal protein S5 domain 2-type fold
G3DSA:3.30.230.10\"[231-360]TRibosomal_S5_D2-type_fold
noIPR
unintegrated
unintegrated
PTHR10169\"[39-524]T\"[557-643]TPTHR10169
PTHR10169:SF3\"[39-524]T\"[557-643]TPTHR10169:SF3
SSF54211\"[215-378]TSSF54211


","BeTs to 14 clades of COG0187COG name: DNA gyrase (topoisomerase II) B subunitFunctional Class: LThe phylogenetic pattern of COG0187 is a---yqvCEBrHujGPOlINXNumber of proteins in this genome belonging to this COG is 2","***** IPB001241 (DNA topoisomerase II family) with a combined E-value of 3e-97. IPB001241A 22-36 IPB001241B 45-64 IPB001241C 78-92 IPB001241D 100-128 IPB001241E 165-177 IPB001241F 256-269 IPB001241G 308-319 IPB001241H 420-467 IPB001241I 475-510 IPB001241J 579-604","Residues 359-458 are 52% similar to a (TOPOISOMERASE ISOMERASE ATP-BINDING DNA SUBUNIT B GYRASE) protein domain (PD000714) which is seen in PARE_BORBU.Residues 472-635 are 47% similar to a (TOPOISOMERASE ISOMERASE ATP-BINDING DNA SUBUNIT B GYRASE) protein domain (PD000616) which is seen in PARE_BORBU.Residues 131-324 are 41% similar to a (TOPOISOMERASE SUBUNIT ISOMERASE ATP-BINDING B DNA GYRASE) protein domain (PD001260) which is seen in O84668_CHLTR.Residues 11-128 are 61% similar to a (TOPOISOMERASE ISOMERASE ATP-BINDING DNA SUBUNIT B GYRASE) protein domain (PD000740) which is seen in PARE_BORBU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Tue Mar 26 15:30:52 2002","Wed Mar 22 10:54:40 MST 2000","Fri Dec 19 10:39:31 2003","Tue Mar 26 15:30:52 2002","Wed Mar 14 16:08:27 MST 2001","Wed Mar 14 16:08:27 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG0339 shows 31% similarity to PG1483, a DNA gyrase subunit B (topoisomerase).","Wed Mar 14 16:08:27 MST 2001","Wed Mar 14 16:08:27 MST 2001","-51% similar to PDB:1KIJ Crystal structure of the 43K ATPase domain of Thermus thermophilus gyrase B in complex with novobiocin (E_value = 4.0E_44);-50% similar to PDB:1EI1 DIMERIZATION OF E. COLI DNA GYRASE B PROVIDES A STRUCTURAL MECHANISM FOR ACTIVATING THE ATPASE CATALYTIC CENTER (E_value = 1.8E_41);-48% similar to PDB:1S16 Crystal Structure of E. coli Topoisomerase IV ParE 43kDa subunit complexed with ADPNP (E_value = 1.1E_30);-53% similar to PDB:1AJ6 NOVOBIOCIN-RESISTANT MUTANT (R136H) OF THE N-TERMINAL 24 KDA FRAGMENT OF DNA GYRASE B COMPLEXED WITH NOVOBIOCIN AT 2.3 ANGSTROMS RESOLUTION (E_value = 8.3E_26);-54% similar to PDB:1KZN Crystal Structure of E. coli 24kDa Domain in Complex with Clorobiocin (E_value = 1.6E_24);","","","Residues 41 to 175 (E-value = 3.1e-13) place PG0339 in the HATPase_c family which is described as Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (PF02518)Residues 215 to 374 (E-value = 1.5e-25) place PG0339 in the DNA_gyraseB family which is described as DNA gyrase B (PF00204)","Fri Dec 19 10:39:31 2003","34540199","","","","","","1","","","PG0368" "PG0340","403350","403808","459","ATGAAAAAGAATATCGCCCTCTTTGCCGGTTCGTTCGACCCTTTCACACGCGGCCACGCCGACATCGTCGAACGCTCGCTGGCCATATTCGATGAGGTGATCATCGCTATCGGCATCAATGAACAGAAGCGCACGCTCTTCTCCGCAGAACGGCGACAAGAGCAGATAGCCCGCTACTATGCTTCCCGACCTGCTATCGGGGTGATTACTTATAGTGGGCTTACGGTCGATCTCGTGCGCCAAACCGGAGCCACTGCTTTGGTGCGAGGTATTCGTTCAGGATCTGATTTTGAGTACGAGCGTACTTTGGCCGACCTGAATCGTCATCTTTCGGGAGTGGATACCGTTCTGCTTTGTACCGACACGCGTCTCTCTTTCATCAGCTCGAGTGCCGTACGCGAGTTGATCTCCTTTGGACGAGACGTCTCGGATTTCCTGCCGGAGGGGTTTGTCCTCGAT","5.80","-1.57","16977","MKKNIALFAGSFDPFTRGHADIVERSLAIFDEVIIAIGINEQKRTLFSAERRQEQIARYYASRPAIGVITYSGLTVDLVRQTGATALVRGIRSGSDFEYERTLADLNRHLSGVDTVLLCTDTRLSFISSSAVRELISFGRDVSDFLPEGFVLD","403350 403808","TIGR ID: PG0369","phosphopantetheine adenylyltransferase","Cytoplasm, Outer membrane","Shares 46% identity with residues 6 to 148 with spQ50452COAD_MYCTU, a phosphopantetheine adenylyltransferase in Mycobacterium tuberculosis.Shares 48% identity with residues 10 to 148 with spO69466COAD_MYCLE, a phosphopantetheine adenylyltransferase in Mycobacterium leprae.Shares 46% identity with residues 6 to 147 with gbAAA16170.2 (L19521), ORF2 in Synechococcus sp. PCC 7942. Shares 44% identity with residues 5 to 153 with spQ55235COAD_SYNP7 a phosphopantetheine adenylyltransferase in Synechocystis sp.Also similar to other prokaryotic adenylyltransferases.","
InterPro
IPR001980
Family
Coenzyme A biosynthesis protein
PR01020\"[4-22]T\"[22-43]T\"[51-75]T\"[87-103]T\"[113-135]TLPSBIOSNTHSS
TIGR01510\"[5-150]TcoaD_prev_kdtB
InterPro
IPR004820
Domain
Cytidylyltransferase
PF01467\"[7-135]TCTP_transf_2
InterPro
IPR004821
Domain
Cytidyltransferase-related
TIGR00125\"[5-65]Tcyt_tran_rel
InterPro
IPR014729
Domain
Rossmann-like alpha/beta/alpha sandwich fold
G3DSA:3.40.50.620\"[3-148]TRossmann-like_a/b/a_fold
noIPR
unintegrated
unintegrated
PTHR21342\"[3-153]TPTHR21342
SSF52374\"[3-149]TSSF52374


","BeTs to 9 clades of COG0669COG name: Phosphopantetheine adenylyltransferaseFunctional Class: HThe phylogenetic pattern of COG0669 is -----qvcebrhuj--ol---Number of proteins in this genome belonging to this COG is 1","***** PR01020 (Lipopolysaccharide core biosynthesis protein signature) with a combined E-value of 1.2e-34. PR01020A 4-22 PR01020B 22-43 PR01020C 51-75 PR01020D 87-103 PR01020E 113-135","Residues 6-135 are 45% similar to a (PROTEIN LIPOPOLYSACCHARIDE CORE) protein domain (PD004081) which is seen in Q50452_MYCTU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Feb 21 17:22:53 MST 2001","Thu Jul 24 15:05:55 2008","Thu Apr 26 13:53:51 MDT 2001","Wed Feb 21 17:22:53 MST 2001","Wed Feb 21 17:22:53 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Jul 24 15:05:55 2008","-63% similar to PDB:1TFU phosphopantetheine adenylyltransferase from Mycobacterium tuberculosis (E_value = 8.7E_32);-65% similar to PDB:1OD6 THE CRYSTAL STRUCTURE OF PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE FROM THERMUS THERMOPHILUS IN COMPLEX WITH 4'-PHOSPHOPANTETHEINE (E_value = 7.6E_28);-66% similar to PDB:1VLH Crystal structure of Phosphopantetheine adenylyltransferase (TM0741) from Thermotoga maritima at 2.20 A resolution (E_value = 6.5E_27);-60% similar to PDB:1B6T PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE IN COMPLEX WITH 3'-DEPHOSPHO-COA FROM ESCHERICHIA COLI (E_value = 3.5E_25);-60% similar to PDB:1GN8 PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE IN COMPLEX WITH MN2+ ATP FROM ESCHERICHIA COLI (E_value = 3.5E_25);","","","Residues 7 to 135 (E-value = 3.7e-22) place PG0340 in the CTP_transf_2 family which is described as Cytidylyltransferase (PF01467)","Thu Apr 26 13:53:51 MDT 2001","34540200","","","","","","1","","","PG0369" "PG0340.1","404205","403945","261","TTGAGCCTGCGATTTATATACAAATCACTTACGATCTATATATATCAAAAACGATTTATATATAAAACGGAAACGATTTGTATACAAATTGAAAACACTTTATATACAGATCGTTGTACGGCTTGTTTTAAGTGGAATTTCGATCTATGGCAGTTCCTTTTCCCTGCACTTTTACCTCGCTTTTCTCCTCTCTACAGATGCTTATTTGGAATCATTCCAAACTCATCTTCGTTGTTGAAAACTTTTTTGGCGTATGATTAT","","","10546","LSLRFIYKSLTIYIYQKRFIYKTETICIQIENTLYTDRCTACFKWNFDLWQFLFPALLPRFSPLYRCLFGIIPNSSSLLKTFLAYDY","","NO TIGR ID corresponds to this gene.","conserved hypothetical protein","Cytoplasm","No hit found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Wed Feb 21 17:36:07 MST 2001","","Wed Feb 21 17:36:07 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1 to 87 are 81% similar to PG1357.1.","Wed Feb 21 17:36:07 MST 2001","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Feb 21 17:36:07 MST 2001","","","","","","","1","","","" "PG0341","404845","405510","666","ATGAAACATTTGTTTAAGTCGACATTAGTACTTCTTTGTGCTCTTTCTTTTTCCGGTACCTATACCTTTGCACAAGAAAATAATACAGAAAAGTCACGATTTGATTTTTCTGTTAGGCTGGGACAGGGATATATTGCAGGTTCAACTACCAACCTGATGTATGGGTATACATCTGCTAACGATAGACTTTTGTCTGGTGCAATTTATCTGGGCTTGACACCAAGTAAGAAAGAAAATGCAACCGGCGTAGCATTTCGTTTCTTATCwCCCTCTCCGGGTTATTATGTCGATATATCCGGCAAAGAAAATACCTTGAATTATGCGTTTTACGTTGTCGGAGCATATAATAGAATAGCCATTCCTATACGCCCTATCAAAAATTTTAATTTCATCTTCTCTACAGAAGTCGGAATGGCTTGGATGAGTCGTCATGAGCAAATTTACAATTCTACTTCGCAGACTTGGGATAAGCAGCGCAAGTCGAGGTCGGGACTGGATTTTGGTCTCGGGATGCATCTGCAATwCCACATTAATAAGACCGTTTACTTTATGGCAGGAACCGATCTTACGTCTTGCATGTTCGGAAAAAGGATCAATGACTACCAGCAAAAGGATCGAACCTTCATTGCACTTATCGACAACAGTATTGGCATAGGATTAAACCTC","10.30","8.85","56117","MKHLFKSTLVLLCALSFSGTYTFAQENNTEKSRFDFSVRLGQGYIAGSTTNLMYGYTSANDRLLSGAIYLGLTPSKKENATGVAFRFLSPSPGYYVDISGKENTLNYAFYVVGAYNRIAIPIRPIKNFNFIFSTEVGMAWMSRHEQIYNSTSQTWDKQRKSRSGLDFGLGMHLQXHINKTVYFMAGTDLTSCMFGKRINDYQQKDRTFIALIDNSIGIGLNL","404845 405510","TIGR ID: PG0373","hypothetical protein","Outer membrane, Extracellular","This sequence corresponds to gi:34396514 in Genbank.","
noIPR
unintegrated
unintegrated
signalp\"[1-24]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","Tue Feb 6 13:20:46 MST 2001","Tue Feb 6 13:20:46 MST 2001","","","Tue Feb 13 17:26:45 MST 2001","Wed Mar 2 10:32:56 2005","Tue Feb 6 13:20:46 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 13 17:24:00 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540202","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Wed Mar 2 10:32:56 2005","","1","","","PG0373" "PG0342","406074","406526","453","GTGGATACTTTAAGCTTCAAGACCATTTCTGCGAACAAAGCAACTGTTACGAAGGAATGGGTCATTGTAGATGCTGAAGGACAGACACTTGGCCGTATGTGTGCCAAGGTGGCAAAGCTCCTGCGCGGCAAATACAAGCCCAACTTCACCCCGCATGTTGATTGTGGCGATAACGTGATCGTTATCAACGCAGACAAGATCGTTCTCTCCGGTAATAAGTGGGACGGTCGTATTTATCTCCGCCATACGGGCTATCCCGGCGGACAACGTCAGTTCACACCTCGTGACTTTATGAACAAAGGCCCGGAATACCTCTTCCGCAAGGTGGTAAAGGGTATGCTCCCCAAGAATCGCTTGGGTGCCAAGATCATTGGCAATCTATATGTATATGCCGGCACGGAGCACAAGCATGAGGCTCAGCAACCCCGGCAACTGGACATTAATTCACTCAAA","10.70","12.85","16999","VDTLSFKTISANKATVTKEWVIVDAEGQTLGRMCAKVAKLLRGKYKPNFTPHVDCGDNVIVINADKIVLSGNKWDGRIYLRHTGYPGGQRQFTPRDFMNKGPEYLFRKVVKGMLPKNRLGAKIIGNLYVYAGTEHKHEAQQPRQLDINSLK","406074 406526","TIGR ID: PG0375","50S ribosomal protein L13","Periplasm, Cytoplasm","This sequence is similar to CT125.Numerous significant hits in gapped BLAST to 50S ribosomal protein L13; e.g. residues 8-142 are 54% similar to AP001507 of Bacillus halodurans, residues 7-147 are 50% similar to AE001797 of Thermotoga maritima, residues 7-147 are 48% similar to AE004142 of Vibrio cholerae.","
InterPro
IPR005822
Family
Ribosomal protein L13
PD001791\"[56-128]TQ8A0Z6_BACTN_Q8A0Z6;
PTHR11545\"[5-147]TRIBOSOMAL PROTEIN L13
PF00572\"[20-147]TRibosomal_L13
PS00783\"[110-132]?RIBOSOMAL_L13
InterPro
IPR005823
Family
Ribosomal protein L13, bacterial and organelle form
PTHR11545:SF2\"[5-147]T50S RIBOSOMAL PROTEIN L13
TIGR01066\"[8-147]TrplM_bact: ribosomal protein L13
noIPR
unintegrated
unintegrated
G3DSA:3.90.1180.10\"[20-150]Tno description


","BeTs to 17 clades of COG0102COG name: Ribosomal protein L13Functional Class: JThe phylogenetic pattern of COG0102 is amtkYqvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB001074 (Ribosomal protein L13) with a combined E-value of 1.1e-31. IPB001074A 41-79 IPB001074B 100-115","Residues 18-146 are 32% similar to a (CHLOROPLAST 50S RIBOSOMAL PROTEIN) protein domain (PD084781) which is seen in RK13_ODOSI.Residues 22-135 are 50% similar to a (RIBOSOMAL PROTEIN L13 50S 60S L13A MULTIGENE FAMILY L13P) protein domain (PD001791) which is seen in RL13_RICPR.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Mar 22 12:36:14 MST 2000","Wed Jun 6 11:39:34 MDT 2001","Wed Jun 6 11:39:34 MDT 2001","Wed Jun 6 11:39:34 MDT 2001","Wed Jun 6 11:39:34 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Jun 6 11:39:34 MDT 2001","-68% similar to PDB:1P85 Real space refined coordinates of the 50S subunit fitted into the low resolution cryo-EM map of the EF-G.GTP state of E. coli 70S ribosome (E_value = 5.1E_37);-68% similar to PDB:1P86 Real space refined coordinates of the 50S subunit fitted into the low resolution cryo-EM map of the initiation-like state of E. coli 70S ribosome (E_value = 5.1E_37);-68% similar to PDB:1VS6 Crystal structure of the bacterial ribosome from escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution. this file contains the 50s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes and is described in remark 400. (E_value = 5.1E_37);-68% similar to PDB:1VS8 Crystal structure of the bacterial ribosome from escherichia coli in complex with the antibiotic kasugamyin at 3.5a resolution. this file contains the 30s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes and is described in remark 400. (E_value = 5.1E_37);-68% similar to PDB:2AW4 Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution. This file contains the 50S subunit of one 70S ribosome. The entire crystal structure contains two 70S ribosomes and is described in remark 400. (E_value = 5.1E_37);","","","Residues 20 to 147 (E-value = 3.9e-63) place PG0342 in the Ribosomal_L13 family which is described as Ribosomal protein L13 (PF00572)","Wed Jun 6 11:39:34 MDT 2001","34540204","","","","","","1","","","PG0375" "PG0343","406539","406922","384","ATGGACTATATCAATGCAATAGGCCGGCGTAAGGCTGCTGTAGCTCGTGTTTATCTGAGCGAAGGCTCCGGCAAGATCGTGATCAACAAGCGCGAAATCGAACAGTATTTCCCGTCTTCAATCTTGCAGTATATCGTTAAGCAGCCACTTCTCAAGCTCGATGTTGCTGCGAAATACGATATCAAGATCAATCTGCGTGGAGGTGGTTTCAAAGGTCAGAGCGAGGCTGCTCGCTTGGCTATCGCCCGTGCACTGGTCAAGATCAATCCGGACGACAAACCCGCTTTGCGTTCAGAAGGCTTCATCACTCGCGATCCTCGCGTGGTAGAACGTAAGAAACCGGGACGTCCCAAAGCTCGCAAGAGATTCCAATTCAGTAAGCGT","11.40","17.99","14509","MDYINAIGRRKAAVARVYLSEGSGKIVINKREIEQYFPSSILQYIVKQPLLKLDVAAKYDIKINLRGGGFKGQSEAARLAIARALVKINPDDKPALRSEGFITRDPRVVERKKPGRPKARKRFQFSKR","406539 406922","TIGR ID: PG0376","30S ribosomal protein S9","Cytoplasm, Periplasm","This sequence is similar to CT126.Numerous significant hits in gapped BLAST to 30S ribosomal protein S9; e.g. residues 8-128 are 52% similar to AP001507 of Bacillus halodurans, residues 8-128 are 51% similar to AE006454 of Lactococcus lactis subsp., residues 8-128 are 52% similar to AE001140 of Borrelia burgdorferi.","
InterPro
IPR000754
Domain
Ribosomal protein S9
PD001627\"[8-88]TRibosomal_S9
PF00380\"[8-128]TRibosomal_S9
PS00360\"[67-85]TRIBOSOMAL_S9
InterPro
IPR014721
Domain
Ribosomal protein S5 domain 2-type fold
G3DSA:3.30.230.10\"[1-128]TRibosomal_S5_D2-type_fold
noIPR
unintegrated
unintegrated
PTHR21569\"[1-128]TPTHR21569
SSF54211\"[2-128]TSSF54211


","BeTs to 17 clades of COG0103COG name: Ribosomal protein S9Functional Class: JThe phylogenetic pattern of COG0103 is amtkYqvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB000754 (Ribosomal protein S9) with a combined E-value of 5.4e-43. IPB000754A 8-25 IPB000754B 59-85 IPB000754C 101-128","Residues 8-128 are 46% similar to a (RIBOSOMAL PROTEIN S9 30S 40S S16 CHLOROPLAST S9P) protein domain (PD001627) which is seen in RS9_MYCTU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Mar 22 12:37:46 MST 2000","Wed Jun 6 11:42:39 MDT 2001","Wed Jun 6 11:42:39 MDT 2001","Wed Jun 6 11:42:39 MDT 2001","Wed Jun 6 11:42:39 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Jun 6 11:42:39 MDT 2001","-58% similar to PDB:1FJG STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH THE ANTIBIOTICS STREPTOMYCIN, SPECTINOMYCIN, AND PAROMOMYCIN (E_value = 8.5E_23);-58% similar to PDB:1GIX Crystal structure of the ribosome at 5.5 A resolution. This file, 1GIX, contains the 30S ribosome subunit, three tRNA, and mRNA molecules. 50S ribosome subunit is in the file 1GIY (E_value = 8.5E_23);-58% similar to PDB:1HNW STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH TETRACYCLINE (E_value = 8.5E_23);-58% similar to PDB:1HNX STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH PACTAMYCIN (E_value = 8.5E_23);-58% similar to PDB:1HNZ STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH HYGROMYCIN B (E_value = 8.5E_23);","","","Residues 8 to 128 (E-value = 1.8e-54) place PG0343 in the Ribosomal_S9 family which is described as Ribosomal protein S9/S16 (PF00380)","Wed Jun 6 11:42:39 MDT 2001","34540205","","","","","","1","","","PG0376" "PG0344","407060","407902","843","ATGTCAAGAATTTCTTTTGATCAATTATTGGAAGCCGGTGCTCACTTCGGACACCTCAAGAGAAAGTGGAATCCGGCTATGGCTCCGTATATCTTTATGGAGCGCAACGATATTCATATTATCGACCTGCACAAAACAGTTGCTAAAGTAGACGAAGCAGCCGAAGTTATTAAGGGTATGGCCAAAAATGGCAAGAAGATTCTCTTCGTTGCCACGAAGAAGCAGGCCAAAGAACCTATCGCCGAATTGGCCAAATCAGTGGGAATGCCCTATGTGGTAGAACGCTGGCCGGGCGGTATGCTCACCAACTTCCCCACCATCCGCAAGGCGGTGAAGAAGATGACCCAGATTGACAAAATGACGGCTGACGGCACATTTGATAATCTTTCCAAGCGCGAAAAGCTGCAAATCACTCGCCAACGTGCCAAATTGGAGAAGACGCTCGGTTCTATCGCCGATATGAACCGTCTGCCTTCTGCCCTGTTCGTGGTGGACGTGATGAAAGAGCACATCGCCGTACGCGAGGCCAACCGTCTTGGCATCCCCGTATTCGCAATGGTGGATACCAACAGCGATCCTTCGCTTATCGACTATGTGATCCCCTCTAACGATGATGCCCTGAAGGCTATCGAACTGATCGTAGGCACGATGTGCCAGGCTATCAACGAAGGTCTGATGGAGCGTAAGGCCGAAAAGCCCGAAGAGGAGGAGACGGAAGAAGCAGCTCCCCGTCGCGAACGTCGCGCTCGCTCAGGAGCTCGTCGCTCTCGTCAGAATGAGAACGAAGCTACGGCAGAAGCTGCCACAGAGGTAGCAGAAGCTCCGGAAGCCGAAGAGGCGGAA","7.10","0.19","31427","MSRISFDQLLEAGAHFGHLKRKWNPAMAPYIFMERNDIHIIDLHKTVAKVDEAAEVIKGMAKNGKKILFVATKKQAKEPIAELAKSVGMPYVVERWPGGMLTNFPTIRKAVKKMTQIDKMTADGTFDNLSKREKLQITRQRAKLEKTLGSIADMNRLPSALFVVDVMKEHIAVREANRLGIPVFAMVDTNSDPSLIDYVIPSNDDALKAIELIVGTMCQAINEGLMERKAEKPEEEETEEAAPRRERRARSGARRSRQNENEATAEAATEVAEAPEAEEAE","407060 407902","TIGR ID: PG0377","30S ribosomal protein S2","Cytoplasm","Numerous significant hits to 30S ribosomal protein S2 in gapped BLAST; e.g. residues 1-223 are 54% similar to dbj|BAB06146.1| 30S ribosomal protein S2 of Bacillus halodurans, residues 1-223 are 55% similar to sp|P21464|RS2_BACSU 30S ribosomal protein S2 (BS1) (vegetative protein 209) (VEG209) of Bacillus subtilis, residues 1-224 are 54% similar to gb|AAK06251.1|AE006444_2 30S ribosomal protein S2 of Lactococcus lactis subsp. lactis.This sequence is similar to BT3877.","
InterPro
IPR001865
Family
Ribosomal protein S2
PR00395\"[6-24]T\"[37-46]T\"[87-104]T\"[158-175]T\"[175-186]T\"[196-210]TRIBOSOMALS2
PF00318\"[9-225]TRibosomal_S2
PS00962\"[6-17]TRIBOSOMAL_S2_1
PS00963\"[158-182]TRIBOSOMAL_S2_2
SSF52313\"[6-242]TRibosomal_S2
InterPro
IPR005706
Family
Ribosomal protein S2, bacterial and organelle form
PTHR12534\"[1-262]TRibosom_S2_bac
TIGR01011\"[3-227]TrpsB_bact


","BeTs to 17 clades of COG0052COG name: Ribosomal protein S2Functional Class: JThe phylogenetic pattern of COG0052 is amtkYqvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB001865 (Ribosomal protein S2) with a combined E-value of 9.3e-54. IPB001865A 9-30 IPB001865B 70-111 IPB001865C 172-213","Residues 146-224 are 56% similar to a (PROTEIN RIBOSOMAL S2 30S) protein domain (PD000490) which is seen in RS2_PEDAC.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Apr 18 13:06:06 MDT 2001","Sat Jan 3 09:58:59 2004","Tue Mar 27 12:12:31 MST 2001","Tue Mar 27 12:12:31 MST 2001","Tue Mar 27 12:12:31 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 27 12:12:31 MST 2001","-68% similar to PDB:1VS5 Crystal structure of the bacterial ribosome from escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution. this file contains the 30s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes and is described in remark 400. (E_value = 9.8E_62);-68% similar to PDB:1VS7 Crystal structure of the bacterial ribosome from escherichia coli in complex with the antibiotic kasugamyin at 3.5a resolution. this file contains the 30s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes and is described in remark 400. (E_value = 9.8E_62);-68% similar to PDB:1P87 Real space refined coordinates of the 30S subunit fitted into the low resolution cryo-EM map of the initiation-like state of E. coli 70S ribosome (E_value = 3.7E_61);-68% similar to PDB:2AVY Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution. This file contains the 30S subunit of one 70S ribosome. The entire crystal structure contains two 70S ribosomes and is described in remark 400. (E_value = 3.7E_61);-68% similar to PDB:2AW7 Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution. This file contains the 30S subunit of the second 70S ribosome. The entire crystal structure contains two 70S ribosomes and is described in remark 400. (E_value = 3.7E_61);","","","Residues 9 to 225 (E-value = 3.5e-93) place PG0344 in the Ribosomal_S2 family which is described as Ribosomal protein S2 (PF00318)","Tue Mar 27 12:12:31 MST 2001","34540206","","","Takami,H., Takaki,Y., Nakasone,K., Hirama,C., Inoue,A. andHorikoshi,K. 1999. Sequence analysis of a 32-kb region including the major ribosomal protein gene clusters from alkaliphilic Bacillus sp. strain C-125. Biosci. Biotechnol. Biochem. 63 (2): 452-455. PubMed: 10192928.","","Tue Mar 27 12:12:31 MST 2001","1","","","PG0377" "PG0345","408044","408865","822","ATGGCTGTAACAATTCAAGACATTGCCAAGCTGCGTAAGATGAGCGGTGCCGGCATGATGGACTGTAAGAATGCGCTCGAAGAGTCCAACAACGACTTCGAGAAAGCAATGGAAATCATTCGCAAGAAGGGACAAGCAGTAGCTGCCAAGCGTTCGGACAGAGAAGCGGCGGAAGGCTGCGTACTCTCAGCCGACAAAGACGGATTTGCCGCTATCGTAGCTCTCAAGTGCGAGACTGATTTCGTGGCAAAGAATGCCGAATTTATCGAGCTTACACAAAATATCCTCAATACTGCTATGGACAAGAAGCCGGCCAACAAAGAAGAGCTGCTCGCCCTTCCTCTGGCTGACGGACGCACCATAGCCGACCACATTACCGATCGTATCGGTGTGACGGGTGAGAAGATGGAATTGGGTGCTTACGAATACATCAGCGGTGCCTCCAGCATTTCTTATATCCACCCGGGCAACAAGCTGGCTACCGTGGCTGCATTCAACGAAGCTATCGAGCACCAGATGGCTCGTGACATAGCCATGCAGATTGCAGCTATGAACCCCGTGGCAGTACTGCCCGAGCAGGTCGATCAGCACATCATCGATCAGGAATTGCAGATCGCTCGCGAAAAGGCTCTCGAAGCCGGCAAGCCGGAGAATCTGCTGGATCGTATCGCTCAAGGTGCTTTGCAGAAGTACTACAAGGAAAACACACTCTTGCAGCAGGAGTTCGTGAAGGACAGCAAGCTGACCATCGAACAATACCTCCATACCGGTAGCAAGACGCTGACTGTAGTAGGCTTCAAGCGTTTCACGCTCAACGCCGAC","5.20","-6.92","30117","MAVTIQDIAKLRKMSGAGMMDCKNALEESNNDFEKAMEIIRKKGQAVAAKRSDREAAEGCVLSADKDGFAAIVALKCETDFVAKNAEFIELTQNILNTAMDKKPANKEELLALPLADGRTIADHITDRIGVTGEKMELGAYEYISGASSISYIHPGNKLATVAAFNEAIEHQMARDIAMQIAAMNPVAVLPEQVDQHIIDQELQIAREKALEAGKPENLLDRIAQGALQKYYKENTLLQQEFVKDSKLTIEQYLHTGSKTLTVVGFKRFTLNAD","408044 408865","TIGR ID: PG0378","elongation factor TS (EF-TS)","Cytoplasm","Numerous significant hits to elongation factor TS (EF-TS) in gapped BLAST; e.g. residues 1-271 are 38% similar to gb|AAC06887.1| elongation factor EF-Ts of Aquifex aeolicus, residues 1-269 are 38% similar to dbj|BAB06145.1| elongation factor Ts of Bacillus halodurans, residues 1-271 are 34% similar to gb|AAD39149.1|AF138286_1 elongation factor ts of Bartonella quintana.","
InterPro
IPR000449
Domain
Ubiquitin-associated/Translation elongation factor EF1B, N-terminal
PF00627\"[3-43]TUBA
InterPro
IPR001816
Family
Translation elongation factor EFTs/EF1B
PTHR11741\"[6-274]TTransl_elong_EFTs/EF1B
TIGR00116\"[1-272]Ttsf
PS01126\"[11-26]TEF_TS_1
PS01127\"[74-84]TEF_TS_2
InterPro
IPR009060
Domain
UBA-like
SSF46934\"[1-54]TUBA_like
InterPro
IPR014039
Domain
Translation elongation factor EFTs/EF1B, dimerisation
PF00889\"[56-273]TEF_TS
SSF54713\"[56-273]TEF_TS
noIPR
unintegrated
unintegrated
G3DSA:1.10.8.30\"[1-54]TG3DSA:1.10.8.30
G3DSA:3.30.479.20\"[56-145]T\"[148-272]TG3DSA:3.30.479.20


","BeTs to 12 clades of COG0264COG name: Translation elongation factor TsFunctional Class: JThe phylogenetic pattern of COG0264 is -----qvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB001816 (Elongation factor Ts) with a combined E-value of 3.5e-49. IPB001816A 8-54 IPB001816B 72-88 IPB001816C 214-255","Residues 2-111 are 44% similar to a (ELONGATION FACTOR TS EF-TS) protein domain (PD106460) which is seen in EFTS_BACSU.Residues 152-271 are 32% similar to a (ELONGATION FACTOR PROTEIN TS EF-TS BIOSYNTHESIS) protein domain (PD002210) which is seen in EFTS_THETH.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Mar 22 11:05:18 MST 2000","Tue Mar 27 12:19:23 MST 2001","Tue Mar 27 12:19:23 MST 2001","Tue Mar 27 12:19:23 MST 2001","Tue Mar 27 12:19:23 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 27 12:19:23 MST 2001","-52% similar to PDB:1EFU ELONGATION FACTOR COMPLEX EF-TU/EF-TS FROM ESCHERICHIA COLI (E_value = 9.4E_33);-59% similar to PDB:1AIP EF-TU EF-TS COMPLEX FROM THERMUS THERMOPHILUS (E_value = 2.3E_15);-54% similar to PDB:1TFE DIMERIZATION DOMAIN OF EF-TS FROM T. THERMOPHILUS (E_value = 6.7E_15);-42% similar to PDB:1XB2 Crystal Structure of Bos taurus mitochondrial Elongation Factor Tu/Ts Complex (E_value = 1.6E_11);","","","Residues 3 to 43 (E-value = 3.8e-10) place PG0345 in the UBA family which is described as UBA/TS-N domain (PF00627)Residues 56 to 273 (E-value = 4.2e-51) place PG0345 in the EF_TS family which is described as Elongation factor TS (PF00889)","Tue Mar 27 12:19:23 MST 2001","34540207","","","","","","1","","","PG0378" "PG0346","409242","411275","2034","ATGGACTACAAACTCACTTCTCGATTCAAGCCCACGGGCGACCAGCCGGAAGCCATTCGCCAACTCGTACAGGGCATCAACGAAGGGATGCCGGCTCAGACGCTGCTCGGCGTAACGGGTTCGGGCAAAACTTTTACGGTGGCTAACGTGGTGGCGGCGGTCAATCGTCCGACCCTTGTCCTGAGTCACAACAAGACCTTGGCAGCACAGCTATACGGAGAGTTCAAAGCCTTCTTCCCCGAGAATGCGGTGGAGTATTTCGTCAGCTACTACGACTACTATCAGCCCGAGGCCTACCTCCCCGTCACAGACACCTATATCGAAAAGGACATGGCCATCAACGCGGAGATCGAAAAACTGCGATTGAGGGCCACGGCTTCGCTCCTGTCAGGGCGGAAAGATGTGCTTGTGGTCAGCTCCGTATCCTGTCTCTACGGTATGGCCAATCCTGAAGCTTTTTCCGAAAAGGTGATCAGCCTGCACACGGGACAAAGGGCAGACAGGGATCATTTTATCCGCCTGCTGGTAGAGAGCTACTACACGAACAATAAAGTAGAGTTCGAGAGCGGCAACTTCCGTGTCAAAGGCGACAGCGTGGACATATTCCCCGCCGTAGAAGGTTATGACGGCGTGGCATACAGGGTGGAGTTTTGGGATGGAGAGGTCGAGCGGCTGAGTACCTTCGATCCGCGAACGGGACGGGAATACGGCCTGCTGTCGGAGCTGAAGATATATCCGGCCAATCTCTTCGTGACGACTAAGGAGCAGGTGGATCGGGCAGTAGGGAAAATCGATGTGGATCTGGGCGCACAGGTCGATTTTCTGAAAGAAATCGGCAAACCATATGAAGCCAAACGCTTGTATGAGCGGGTCACGTATGACTTGGAAATGATCCGTGAGTTGGGTTATTGTTCCGGTATAGAGAACTATTCGCGCTACTTCGACGGCCGTGACGCGGGCGAACGTCCTTTCTGTCTGTTGGATTATTTCCCGGAGGATTTCCTGTTGGTCATAGACGAAAGCCATGTAACGATACCGCAGATACGTGCCATGTACGGAGGCGATCGTTCGCGCAAGGAGAATCTGGTCGAATACGGATTCCGCCTGCCTGCCGCTCTCGACAATCGGCCGCTTCGCTTCGACGAGTTCGAAGCTCTCACCCCCCGGACCCTTTATATCAGTGCCACGCCTGCCGACTATGAGCTGAACAGAAGCGAAGGCGTGATCGTCGAGCAGCTGATCCGTCCGACCGGACTGCTGGATCCCATCATCGACGTCAAGCCGACGGCAAACCAAGTGGACGATCTGATGGAGGAGATAGCACGCTGCATCGAAAAGAAAGAGCGCGTACTGGTAACGACCCTGACCAAACGTATGGCAGAGGAGCTTAGCGAATACCTGCTACGCCACGGTATCAGCACCGGCTACATACACAGCGATGTGGACACGCTGGAGCGTGTGCGTATCATGGAAGACCTGCGCAAGGGGGTCTACGATGCACTCATCGGGGTGAATCTGCTCCGCGAAGGATTGGACTTGCCGGAAGTTTCGCTTGTGGCTATTCTGGATGCGGATAAGGAAGGATTCCTGCGCTCGCATCGTTCGCTCACGCAGACTGCAGGACGTGCCGCCCGGCACATTCATGGGCGTGTCATCTTCTACGCGGACAAGATCACCGACAGTATGCAGCTCACCATGGACGAGACTGCACGCCGACGCGCAAAGCAACTGGCCTACAACGAAGCGCACGGCATCACCCCCCAACAGATAGTGAAGAACAGTGCTGCCATTTGGGGAGAAGGCGATGTGTCGGCCTTGCAATCCGATACAGAATCCGGTGCGTACATAGAAGAGAGCAGCATGGTGGCTGCCGATCCTTTGGCCGACTATCTGAGCAAACCCAAGCTGGAAGCACTCATTGCTTCGACCAAGAAGCAAATGCTGGCAGCAGCCAAAGAGCTGGACTTTCTGGAAGCGGCACGACTTCGGGACGAAGCCGCACGATTGGAAAAGAAACTGGAGCAACTCACAGCC","4.90","-22.68","76483","MDYKLTSRFKPTGDQPEAIRQLVQGINEGMPAQTLLGVTGSGKTFTVANVVAAVNRPTLVLSHNKTLAAQLYGEFKAFFPENAVEYFVSYYDYYQPEAYLPVTDTYIEKDMAINAEIEKLRLRATASLLSGRKDVLVVSSVSCLYGMANPEAFSEKVISLHTGQRADRDHFIRLLVESYYTNNKVEFESGNFRVKGDSVDIFPAVEGYDGVAYRVEFWDGEVERLSTFDPRTGREYGLLSELKIYPANLFVTTKEQVDRAVGKIDVDLGAQVDFLKEIGKPYEAKRLYERVTYDLEMIRELGYCSGIENYSRYFDGRDAGERPFCLLDYFPEDFLLVIDESHVTIPQIRAMYGGDRSRKENLVEYGFRLPAALDNRPLRFDEFEALTPRTLYISATPADYELNRSEGVIVEQLIRPTGLLDPIIDVKPTANQVDDLMEEIARCIEKKERVLVTTLTKRMAEELSEYLLRHGISTGYIHSDVDTLERVRIMEDLRKGVYDALIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAARHIHGRVIFYADKITDSMQLTMDETARRRAKQLAYNEAHGITPQQIVKNSAAIWGEGDVSALQSDTESGAYIEESSMVAADPLADYLSKPKLEALIASTKKQMLAAAKELDFLEAARLRDEAARLEKKLEQLTA","excinuclease ABC subunit B","This repair enzyme catalyzes the excision of UV-damaged nucleotide segments. It consists of three subunits. It is believed to be cytoplasmically located. Other subunits are PG1934 (A), PG0923 (A) and PG1740 (C).TIGR ID: PG0380","excinuclease ABC subunit B","Cytoplasm","This sequence is similar to CT586 of Chlamydia trachomatis.Numerous significant hits in gapped BLAST to excinuclease ABC subunit B; e.g. residues 3-673 are 55% similar to AE004737 of Pseudomonas aeruginosa, residues 5-671 are 54% similar to AE006079 of Pasteurella multocida, residues 3-671 are 56% similar to AE000180 of Escherichia coli.This sequence is similar to BT0570.","
InterPro
IPR000010
Domain
Proteinase inhibitor I25, cystatin
PS00287\"[20-33]?CYSTATIN
InterPro
IPR001650
Domain
Helicase, C-terminal
PF00271\"[466-547]THelicase_C
SM00490\"[461-547]THELICc
PS51194\"[432-594]THELICASE_CTER
InterPro
IPR001943
Domain
UvrB/UvrC protein
PF02151\"[637-672]TUVR
PS50151\"[637-672]TUVR
InterPro
IPR004807
Family
Excinuclease ABC, B subunit
TIGR00631\"[2-670]Tuvrb
InterPro
IPR006935
Family
Type III restriction enzyme, res subunit
PF04851\"[8-82]TResIII
InterPro
IPR009055
Domain
UvrB, C-terminal UvrC-binding
SSF46600\"[622-677]TUvrB_C
InterPro
IPR014001
Domain
DEAD-like helicases, N-terminal
SM00487\"[7-426]TDEXDc
InterPro
IPR014021
Domain
Helicase superfamily 1 and 2 ATP-binding
PS51192\"[24-182]THELICASE_ATP_BIND_1
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[3-196]T\"[289-411]T\"[413-580]TG3DSA:3.40.50.300
G3DSA:4.10.860.10\"[615-677]TG3DSA:4.10.860.10
PTHR10967\"[450-523]TPTHR10967
PTHR10967:SF59\"[450-523]TPTHR10967:SF59


","BeTs to 13 clades of COG0556COG name: Helicase subunit of the DNA excision repair complexFunctional Class: LThe phylogenetic pattern of COG0556 is --t--qVcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 298-434 are 71% similar to a (SUBUNIT B ABC EXCINUCLEASE) protein domain (PD186159) which is seen in O67708_AQUAE.Residues 555-592 are 68% similar to a (SUBUNIT B ABC EXCINUCLEASE SOS RESPONSE EXCISION) protein domain (PD099792) which is seen in UVRB_NEIGO.Residues 446-568 are 67% similar to a (HELICASE PROTEIN POLYPROTEIN ATP-BINDING RNA RNA-BINDING) protein domain (PD000033) which is seen in UVRB_MICLU.Residues 172-298 are 41% similar to a (REPAIR DNA ATP-BINDING SUBUNIT B ABC EXCINUCLEASE) protein domain (PD002798) which is seen in UVRB_BACSU.Residues 15-168 are 63% similar to a (SUBUNIT B ABC REPAIR) protein domain (PD133659) which is seen in UVRB_CHLTR.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","Wed Mar 22 15:38:40 MST 2000","Tue Mar 26 15:50:48 2002","Wed Mar 22 15:38:40 MST 2000","Tue Dec 2 16:51:56 2003","Tue Mar 26 15:45:53 2002","","Wed Mar 14 16:26:11 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 37-246 show 25% similarity to PG1549, a transcription repair coupling factor (TCRF) helicase.","Wed Mar 14 16:26:11 MST 2001","Wed Mar 14 16:26:11 MST 2001","-66% similar to PDB:1D2M UVRB PROTEIN OF THERMUS THERMOPHILUS HB8; A NUCLEOTIDE EXCISION REPAIR ENZYME (E_value = 2.2E_170);-66% similar to PDB:1C4O CRYSTAL STRUCTURE OF THE DNA NUCLEOTIDE EXCISION REPAIR ENZYME UVRB FROM THERMUS THERMOPHILUS (E_value = 2.9E_170);","","","Residues 466 to 547 (E-value = 2.6e-17) place PG0346 in the Helicase_C family which is described as Helicase conserved C-terminal domain (PF00271)Residues 637 to 672 (E-value = 5.5e-05) place PG0346 in the UVR family which is described as UvrB/uvrC motif (PF02151)","Tue Dec 2 16:51:56 2003","34540208","","","","","","1","","","PG0380" "PG0347","412795","411278","1518","ATGTTATCTACTGAACACTTCCTCCTCTTTGCTTCTATTGTCCTATTTGCAGGTATTATGGCCGGAAAGGTGGGCTATCGTTTCGGTATCCCTACCCTTTTGATCTTTCTCTTCACCGGTATGCTCTTCGGAGTGGATGGATTCGGTTTTCAGTTTTCTAATGCCGATGTGGCACAGTCGGTAGGAATCATCGCTCTCTCCATTATTCTCTTCACCGGTGGTATGGATACGCGGATCAGAAAGGTGCGTCCGGTCATTGCCCAGGGACTTACGCTGTCTACTTTGGGTGTCTTGCTGACAGCTCTTCTATCCGGGTTCTTTATCTTTTGGCTGAGCGGTTCGGACTTTGGCCCTTACCCGTTCGCTCTTTCTACCTCTTTGCTGCTGGCTGCCACGATGGCCAGTACCGACTCGGCTTCGGTATTCGCCATCCTCCGTTCGCAAAAGATGCAGCTCAAAGAGAATCTGGCTCCGACACTGGAGATGGAGAGCGGTAGTAACGACCCCATGGCGTATATGCTGACCATCGCACTCATCGATTTCATCACCACCGGTCAGAGCGGAATAGGGTCTATTGTTCTGACTTTCATCCTGCAGTTTGTCGTGGGTGGTACATTGGGTTTCCTGATGGGGCGTTTGGCCGTCTTTATTCTCAATCGGATGAATATCCACAACGACACCCTCTACCCCATTACCCTGCTGTGCATGGTGTTTTTCACCTTCTCGGTGACCTCCCTTTTGCAAGGGAACGGTTATTTGGCTGTTTATATCGCCGGTATTGTGGTCGGGAACAATCGGGTCATTCATAAGAAGAGTATCAATACCTTTCTCGATGGTATCACCTGGCTGGTACAGATTATCCTGTTCATCCTCTTGGGCTTGCTCGTCAATCCGAGAGAGATGCTGGATGTGGCACCGTTCTCCCTCGTGGTAGGTGCTTTCATGATTCTCATAGCTCGCCCGTTGGCCGTCTATTTCTGCCTGATTCCCTTCCGCAAAATATCATTCAGGGGTAAGACCTTTCTCAGCTGGGTCGGATTGCGCGGAGCCGTTCCTATCATCTTTGCCACCTATCCCATGATCGATAATATCCCCGGAGCGGATCAGCTTTTCAATGTCGTCTTCTTCATTACCATACTCTCTCTGCTCGTACAGGGGAGTACGATCTCCCAGGTAGCACGTTGGCTCGGACTGGATATTCCTTCGCCGCCAATAGGTAGCCTGTTCGGTGTGGAAATACCGGAAGAGACGGGAACCAAGTTGGAGGAGAGAGTGGTGGATGCTTCCATGCTGTCCCATGGCGATCTGCTGATGAATCTTTCTCTTCGTGATGAAGAGCTTGTCATCCTGGTACGAAGAGGCGAGGGCTATCGTGTACCGAAAGGGCGTATGCACTTGCAAGTGGGAGACGTGCTACTGATCGTATCCGAAAAGAATCTTTCCCAGACATTGACCTCAGGCGATCCGGAGAATCATCCCGGTCTTCTGCAGCGTCTCAAGCACAGGCTCTTGCGCCGT","9.20","4.60","55433","MLSTEHFLLFASIVLFAGIMAGKVGYRFGIPTLLIFLFTGMLFGVDGFGFQFSNADVAQSVGIIALSIILFTGGMDTRIRKVRPVIAQGLTLSTLGVLLTALLSGFFIFWLSGSDFGPYPFALSTSLLLAATMASTDSASVFAILRSQKMQLKENLAPTLEMESGSNDPMAYMLTIALIDFITTGQSGIGSIVLTFILQFVVGGTLGFLMGRLAVFILNRMNIHNDTLYPITLLCMVFFTFSVTSLLQGNGYLAVYIAGIVVGNNRVIHKKSINTFLDGITWLVQIILFILLGLLVNPREMLDVAPFSLVVGAFMILIARPLAVYFCLIPFRKISFRGKTFLSWVGLRGAVPIIFATYPMIDNIPGADQLFNVVFFITILSLLVQGSTISQVARWLGLDIPSPPIGSLFGVEIPEETGTKLEERVVDASMLSHGDLLMNLSLRDEELVILVRRGEGYRVPKGRMHLQVGDVLLIVSEKNLSQTLTSGDPENHPGLLQRLKHRLLRR","412795 411278","TIGR ID: PG0381","Na+/H+ antiporter","Inner membrane, Cytoplasm","Shares 34% identity at residues 4 to 484 with dbj|BAB07757.1| (AP001520), a Na+/H+ antiporter in Bacillus halodurans.Shares 35% identity at residues 9 to 478 with sp|P76007|YCGO_ECOLI, a putative Na+/H+ exchanger in E. coli.Shares 33% identity at residues 8 to 476 with emb|CAB90969.1| (AL355832), a putative Na+/H+ antiporter in Streptomyces coelicolor.Also shares strong similarity to other prokaryotic Na+/H+ antiporters.This sequence is similar to BT0685.","
InterPro
IPR006153
Family
Sodium/hydrogen exchanger
PF00999\"[11-395]TNa_H_Exchanger
noIPR
unintegrated
unintegrated
PTHR10110\"[254-400]TPTHR10110
SSF51735\"[392-486]TSSF51735


","BeTs to 7 clades of COG0025COG name: Na+/H+ antiporter (eukaryotic type)Functional Class: PThe phylogenetic pattern of COG0025 is aM--Y--CEbr----------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 9-316 are 35% similar to a (NA+/H+ PROTEIN TRANSMEMBRANE TRANSPORT) protein domain (PD000631) which is seen in YCGO_ECOLI.Residues 320-394 are 50% similar to a (NA+/H+ EXCHANGER TRANSPORT) protein domain (PD003071) which is seen in YCGO_ECOLI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Feb 21 17:11:43 MST 2001","Wed Dec 3 08:41:07 2003","Thu Apr 26 14:08:30 MDT 2001","","Wed Feb 21 17:11:43 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 27 to 317 are 20% similar to PG1567.","Wed Feb 21 17:11:43 MST 2001","Wed Feb 21 17:11:43 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 7 to 395 (E-value = 1.3e-46) place PG0347 in the Na_H_Exchanger family which is described as Sodium/hydrogen exchanger family (PF00999)","Thu Apr 26 14:08:30 MDT 2001","34540209","","","","","","1","","","PG0381" "PG0348","413331","414800","1470","ATGGACTTGGCTGAAGTTTTTGTTACTGAAGGATTCCCGCACTTAACATATGTCGAACCACTAAACTACTACGAAATTCTAATTGATGTAAAAAGTAAAAAGAAGCCAGTTATCATAGAGGGACAAACTGGAACAGGGAAGACTTCTACTATTTTGAAGATATTATCTGACATAAAAGAAGAAATACATTTTGAATACTTGTCAGCAAGAAATATAGATGAAACGACGAAAATAAATCAACTCATTAATAGTAATTTTGAAGAGGGAGGAAATTTTGTTATAGATGATTTCCATAGACTTGTTGACCATTTGAAGTTGCGTTTGTCTAATATTGCAAAGCTTGCAGCAGACAATGTTGCCAATCCCAAATATCCCAAGCTTGTAATCATTGGAATTAATCAGACAGGAAGAGAATTGCTAAAACTATCTCCTGATATCGCTAAAAGATTTGGAGTGCATAAAATACAGCCTGCAACAGAAGAAAATGTCAAAAGCATTATTGAAATGGGAGAAAAACTTTTGAATATAAAATTTTTGAGGCATAAGCCAATCTATTCAGAATCTAAAGGCGATTATTGGTTAACACAACATATATGTCAAACAATCTGCACGCAAAACGGAGTTATAAATACTCAAGAAGAAACAAAACAAATAAAATTAAATATAAAAGAAGCTAGGAGAAAAATAATTGGAAGATTAGAATATATTTACAATGATATTGTTAAAGAGTTTTGTCGTGGGAAAAGATTTCGCCCAAGCAATGATGCCTATATTAAATTTTTAGAATCTGTGAGTAAAATGGATGATTTTCCAATTGACTTGAACGAACTGATAGGAAATGTAGATGATCATCACAGAATAGCAATCTCTAGTATAAAAGGACATAGGTTAGATGTCCTTATAAAGGAAAAGATCGATCTGAGAAATAACTTCTATTACTCCAAGGATACAAAATTATTTAACATTGAAGATCCTGCGTTGCAATATTACATCAAGCACATCGACTGGAACAAGTTGTATAAAGAATGCGGTTTCAAAAAGAACAATGGAAGCTATAAATATGATATTGCTATTTCTTTTGCTGGTGAAAAGAGGGAGCTCGCAGAAGAGATTGCGGATCAACTTCAACGATCAGACTATGAGGTGTTTTATGATAGACTATATGAGGACAATTATCTAGGAATGTCATTGTCTGATGAGTTTGAGCGAATTTTTACATCGGAATCCAAATTTGTTGTGTGTCTTCTTGATAAAAATCACAAAAAAAAGATTTGGCCGACATTTGAAAGAGATTGTTTTTTGGAAAAAGTACAAACTAATGAGGTTATTCCAATATTCCTGGATGACACCAAGTTCCCAGGTATACCTAATGACATTGCTTGCATTCGTTATGAAGAGAAGCAGGAAGATAAGAAGCGATCTGAAAGAGTGCAGCGAGAAATAATTGAAAGAATAATTTCTAAGGTTCAA","6.90","-0.38","57423","MDLAEVFVTEGFPHLTYVEPLNYYEILIDVKSKKKPVIIEGQTGTGKTSTILKILSDIKEEIHFEYLSARNIDETTKINQLINSNFEEGGNFVIDDFHRLVDHLKLRLSNIAKLAADNVANPKYPKLVIIGINQTGRELLKLSPDIAKRFGVHKIQPATEENVKSIIEMGEKLLNIKFLRHKPIYSESKGDYWLTQHICQTICTQNGVINTQEETKQIKLNIKEARRKIIGRLEYIYNDIVKEFCRGKRFRPSNDAYIKFLESVSKMDDFPIDLNELIGNVDDHHRIAISSIKGHRLDVLIKEKIDLRNNFYYSKDTKLFNIEDPALQYYIKHIDWNKLYKECGFKKNNGSYKYDIAISFAGEKRELAEEIADQLQRSDYEVFYDRLYEDNYLGMSLSDEFERIFTSESKFVVCLLDKNHKKKIWPTFERDCFLEKVQTNEVIPIFLDDTKFPGIPNDIACIRYEEKQEDKKRSERVQREIIERIISKVQ","413331 414800","TIGR ID: PG0382","conserved hypothetical protein","Cytoplasm","Shares 26% similarity at residues 353 to 471 with pir||S76765, a hypothetical protein in Synechocystis sp. (strain PCC 6803).","
InterPro
IPR000157
Domain
Toll-Interleukin receptor
SSF52200\"[349-449]TTIR
noIPR
unintegrated
unintegrated
SSF52540\"[17-168]TSSF52540


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 353-471 are 26% similar to a (HYPOTHETICAL 37.6 KD PROTEIN) protein domain (PD133276) which is seen in P74570_SYNY3.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Feb 21 16:55:28 MST 2001","Wed Feb 21 16:55:28 MST 2001","Wed Feb 21 16:55:28 MST 2001","","Wed Feb 21 16:55:28 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Feb 21 16:55:28 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Feb 21 16:55:28 MST 2001","34540210","","","","","","1","","","PG0382" "PG0349","414906","416222","1317","ATGATAGTTTTCCTCATTAAAGCTGCGCAGTTGATCCTCGCATTCGCCATTCTGGTTTTCGTCCATGAATTGGGACATTACTTTTTTGCTCGTCTCTTCCGAGTCAGGGTGGACAAGTTCTACCTTTTCTTCGATTGGGGAGGTGCCATCTTCCGTTACAAGCCCAAACGGAGCGAAACGGAATTCGGTATCGGTTGGCTTCCTCTCGGTGGCTATTGCAAGATCAACGGGATGATAGACGAATCCATGGATACCGAGTACTTGCAGCAAGAGCCGAAACCTTATGAATTTCGCAGCCGACCGACATGGCAGCGGCTTCTGATCATGCTGGGGGGAGTGCTGTTCAATTTCCTGTTGGCTCTTGTCATCTATTCCGGTATTGTCCTGCAATGGGGTAGTATGCGGATGCCTTCGGATCGTATCAGTTCGGGCATGGCCTTCTCCTCCGTGGCACAGGAGGCCGGTTTTCAAAACGATGATATTATCCTCGCTGTGGATGGCCGGCCGGTGGATGCTTTGGCTTCAGGGTTCATGCGGTCGGTGATTCAGGCTCGCCAAGTGGAAGTCCTGAGACAAGGCCGGCGAGAGATCGTACATGTTCCGCACGATATGATGAAGCGTGTGCTCAAAGCCAACAGCGGCTTTATGTCCATACAGGTGCCGTTCGTCATCGATAGCGTCATGCCCCAAGGGACGGCTTATGCCTGTCAGCTGAAAGCGGGCGACAGTATCACTGCCGTAAATGGCAAGTTGATGCCTGATGCAAGCGATGTGATCGGAGCCATTCGCAGCCATGCAGGCGATACCATAGCCCTGTCCATAGCCCGAGCAGGCGAAGAGCTGACTATAACGCTGCCGGTAGATACCGGCGGACTTATCGGAGTGAGCCTCCGACCGTTGGATGCCATCTATACCATCGATCATATCCGATATTCGCTATTCGAAGCCATACCGGCCGGAATAGCACAAGGTATGGGCACCATGCGCAGCTACGTAAGCGACATGAAGTACGTCTTCACCAAAGAAGGGGCAGGACAGATAGGTGGCTTCGGGACATTGGGCAGCCTTTTCCCGGCCTCTTGGAACTGGCCTCAATTCTGGGCTATGACGGCACTTCTCTCCATCATGCTGGCCGTCATGAACATTCTGCCCATACCGGCATTGGATGGAGGACATATTCTCTTTCTTCTTATTGAAATCATTACCCGCAGGAAAGTCGGTCAGGAAGTCCTTATCCGTGCGCAATTGATCGGGATGGCTATTCTGATTCTTCTCGTTCTCTATGCCAATGGCAATGACTTGCTCAGGGCTTTTCGC","9.10","4.60","48660","MIVFLIKAAQLILAFAILVFVHELGHYFFARLFRVRVDKFYLFFDWGGAIFRYKPKRSETEFGIGWLPLGGYCKINGMIDESMDTEYLQQEPKPYEFRSRPTWQRLLIMLGGVLFNFLLALVIYSGIVLQWGSMRMPSDRISSGMAFSSVAQEAGFQNDDIILAVDGRPVDALASGFMRSVIQARQVEVLRQGRREIVHVPHDMMKRVLKANSGFMSIQVPFVIDSVMPQGTAYACQLKAGDSITAVNGKLMPDASDVIGAIRSHAGDTIALSIARAGEELTITLPVDTGGLIGVSLRPLDAIYTIDHIRYSLFEAIPAGIAQGMGTMRSYVSDMKYVFTKEGAGQIGGFGTLGSLFPASWNWPQFWAMTALLSIMLAVMNILPIPALDGGHILFLLIEIITRRKVGQEVLIRAQLIGMAILILLVLYANGNDLLRAFR","414906 416222","TIGR ID: PG0383","zinc metalloprotease","Inner membrane, Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 12-436 are 27% similar to gb|AAG07037.1|AE004785_1 conserved hypothetical protein of Pseudomonas aeruginosa, residues 12-436 are 27% similar to gb|AAF95397.1| conserved hypothetical protein of Vibrio cholerae, residues 12-436 are 29% similar to emb|CAB83400.1| putative integral membrane protein of Neisseria meningitidis Z2491, residues 5-434 are 27% similar to gb|AAC65573.1| zinc protease, putative of Treponema pallidum.This seqeunce is similar to BT2001.","
InterPro
IPR001478
Domain
PDZ/DHR/GLGF
SM00228\"[211-278]TPDZ
PS50106\"[205-278]TPDZ
SSF50156\"[111-207]T\"[214-288]TPDZ
InterPro
IPR006025
Binding_site
Peptidase M, neutral zinc metallopeptidases, zinc-binding site
PS00142\"[19-28]?ZINC_PROTEASE
InterPro
IPR008915
Family
Peptidase M50
PF02163\"[10-433]TPeptidase_M50
noIPR
unintegrated
unintegrated
G3DSA:2.30.42.10\"[223-286]TG3DSA:2.30.42.10
PTHR22939\"[238-288]TPTHR22939
PTHR22939:SF12\"[238-288]TPTHR22939:SF12


","BeTs to 13 clades of COG0750COG name: Predicted membrane-associated Zn-dependent proteases 1Functional Class: MThe phylogenetic pattern of COG0750 is AmtK-qvCebrhUj--olinxNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 12-111 are 39% similar to a (PROTEIN PROTEASE CDS TRANSMEMBRANE) protein domain (PD004820) which is seen in O67776_AQUAE.Residues 364-438 are 41% similar to a (PROTEIN CDS TRANSMEMBRANE D15) protein domain (PD005718) which is seen in O84075_CHLTR.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Dec 9 17:09:50 2003","Tue Dec 9 17:09:50 2003","Tue Mar 27 12:33:11 MST 2001","","Tue Mar 27 12:33:11 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 27 12:33:11 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 10 to 433 (E-value = 2.4e-48) place PG0349 in the Peptidase_M50 family which is described as Peptidase family M50 (PF02163)","Tue Mar 27 12:33:11 MST 2001","34540211","","","","","","1","","","PG0383" "PG0350","416235","418754","2520","ATGATTCGGATGGAGACTTACCCCCACAACTTCGAGGAGAAAGTGGGTTTCGATGAGATTCGTCGCCTTCTCATCGGCCATTGCCATAGTCCGATGGGCAGCGATCGGGTAATACAGATGCATGCTCTTGCAAGGCATAACGAAGTCAGCCGCTTGCTTGCCGAGACGGAAGAAATGCAGATTATCCTGAGAGAAGAAGACTTGTTTCCCGATCTCCGTCTGGCCGATGTGCGAGAAGCACTAAACCGTATCCGACCTGCCGGTACCTATCTGGAAGAGCGAGAGTTGCAGGATGTGGCTACTGCTCTGAGGACAATCGAGGCTCTCATCCGTTTCTTCCATGTGGGGGAAGAAGAGGAGGGTAAGGATACACCGTACCCCCACCTCCAAACTCTTTTGTCCGAGGTCATTGTCTTTCCGGATCTGGAGAAGCGTATCAGCAGCTTGTTCGATCGGTTCGGGAAAATGAAAGACAATGCCTCGCCCGAACTGATGAATATCCGTCGCGAACTCTCTTCCATAGAGAAAAATATCTCGCGCACTCTCCAAGGCATCCTTCGCTTGGCTCAGTCCGAAGGCTGGGTGGATCAGGGCGTACAGCCATCGGTGCGCGATGGGCGGCTGGTGATTCCGGTAGCTCCGGCACATAAGCGGAAAGTAAGAGGTATCGTCCATGACGAATCCGGCACGGGGAAGACCGTCTTCATCGAACCGGCAGAGATAGTAGAAGCGAACAATCGTATTCGCGAGCTGGAGGCAGCCGAAAGACGGGAAATCATTCGCATCCTGATAGAGGTATGCGATGCACTTCGTCCGCACATTCATGATCTGATCGACTGCTACGAATGGATAGGACTGTTTGATTTCATCTCGGCGAAAGCTCGTCTCTGCGGCGAATGGAATGCTATCCGTCCCATTTTGTCCAAGAAGCCGGAGATCCGTTGGGAGAAAGCCGTACATCCGCTGCTGCTTCGCAGTCTCAGGGCGCATGGCAGAGATGTGATTCCGCTGGATATATCGCTCACTGCTCCCGACAAACGCATCCTGGTCATATCCGGTCCCAATGCAGGAGGCAAATCTGTCTGTCTAAAGACGGTGGGGCTGTTGCAATATATGCTTCAAAGCGGTCTTCCCATACCGATGTCTCCCGATTCTACGGCAGGGATATTCGGCAAGCTCTTCATCGATATAGGCGATGAACAGTCCATAGAAGATGACCTCAGCACCTACAGTTCGCATCTGAGGAATATGAAACACTTTGCCCGCCATACGGATAAGAATACACTATTATTAATAGATGAGTTCGGTGGCGGTACCGAACCTCAGATAGGCGGAGCCATTGCGGAAGCACTACTACATCGCTTCAACGAACAGGAAGGATTCGGAGTAGTAACCACTCACTACCAGAATCTGAAGGCCTATGCCGAAGAGACACCGGGGCTTGTAAACGGAGCCATGCTCTACGATCGCCATGAGATGCGCCCACTCTTCCGCCTTTCCATCGGTCGGCCGGGAAGTTCGTTTGCCATCGAGATTGCTCGCAAGATCGGGCTGCCCGAGGAGGTCATAGCCGAAGCCACGGATAAGGTGGGCACGGGCTACATCGACATGGATAAATATCTTCAGGACATCGTACGGGACAAGCGATACTGGGAGACTAAGCGTACCAATATCCGAAAGGAGGAAAAACGGCTGGAAGGGGCTGCCGCCGAATATGAATCGCGTCTGGAGTCTATCAAAAAAGAACGCAAACAAATACTGGACGAAGCCCGCCAACAAGCATCCGTGATGCTGTCCCAATCGTCTGCACAGATAGAGAAAACAATCCGCGACATCAAAGAGGCACAAGCCGAAAGGGAGAAAACGCGGAGAGCACGACAGGAGCTGAACGACTTCAGGGAAACGATCAACAAAGAAGAGATCGAAAAAGAAGAGCGAATCAATCGGGAGATAGAGAAAATAAAACGGAGGAAAAAACGGAAGCAGGAGAAAGCAGCAAGCCGTTCGGCCGAAACACCTGTACAGCCAAAGCTGCAAGAAGTGCCCCAACCCCCTGTCATACAAGTGGGCGATACGGTACGAATCAAAGGACAGACGGCTATAGGCAGTATTATAGATATGAATGATCGGGAGGCTACCATTGCTCTCGGAATGATCAAAACGACTGTGCCGATCGATCGGTTGGAACCGGCCAAGCCCGTCAAGGAGCGGAAGTCTGAGCCTGTCTCCGGGGCATCTGCCCGAATGATCATAGACCGGATCCACGAGAAGCGTTTGGATTTCAAGCAAGACATCGATTTGCGTGGCATGCGTGTGAACGAAGCCGTCCAAGCCGTCATGTATTTTATCGATGATGCCATCCAACTGGGAATACCGCGCGTACGGATACTTCATGGAACGGGAACAGGTGCACTCAGAACGGTGATCAGGGAGTATTTGGCCACAGTCAATGGCGTAAGGCATTTTGCAGACGAACACGTCCAGTTCGGAGGAGCCGGCATCACTGTCGTTGAATTGGGA","7.00","0.00","95452","MIRMETYPHNFEEKVGFDEIRRLLIGHCHSPMGSDRVIQMHALARHNEVSRLLAETEEMQIILREEDLFPDLRLADVREALNRIRPAGTYLEERELQDVATALRTIEALIRFFHVGEEEEGKDTPYPHLQTLLSEVIVFPDLEKRISSLFDRFGKMKDNASPELMNIRRELSSIEKNISRTLQGILRLAQSEGWVDQGVQPSVRDGRLVIPVAPAHKRKVRGIVHDESGTGKTVFIEPAEIVEANNRIRELEAAERREIIRILIEVCDALRPHIHDLIDCYEWIGLFDFISAKARLCGEWNAIRPILSKKPEIRWEKAVHPLLLRSLRAHGRDVIPLDISLTAPDKRILVISGPNAGGKSVCLKTVGLLQYMLQSGLPIPMSPDSTAGIFGKLFIDIGDEQSIEDDLSTYSSHLRNMKHFARHTDKNTLLLIDEFGGGTEPQIGGAIAEALLHRFNEQEGFGVVTTHYQNLKAYAEETPGLVNGAMLYDRHEMRPLFRLSIGRPGSSFAIEIARKIGLPEEVIAEATDKVGTGYIDMDKYLQDIVRDKRYWETKRTNIRKEEKRLEGAAAEYESRLESIKKERKQILDEARQQASVMLSQSSAQIEKTIRDIKEAQAEREKTRRARQELNDFRETINKEEIEKEERINREIEKIKRRKKRKQEKAASRSAETPVQPKLQEVPQPPVIQVGDTVRIKGQTAIGSIIDMNDREATIALGMIKTTVPIDRLEPAKPVKERKSEPVSGASARMIIDRIHEKRLDFKQDIDLRGMRVNEAVQAVMYFIDDAIQLGIPRVRILHGTGTGALRTVIREYLATVNGVRHFADEHVQFGGAGITVVELG","416235 418754","TIGR ID: PG0384","DNA-mismatch repair protein","Cytoplasm","Several hits in gapped BLAST to MutS2 proteins, e.g. residues 17-839 are 30% similar to MUS2_BACSU. Residues 14-839 are 28% similar to MUS2_AQUAE.This sequence is similar to BT4680.","
InterPro
IPR000432
Domain
DNA mismatch repair protein MutS, C-terminal
PD001263\"[397-483]TMutS_C
PF00488\"[302-532]TMutS_V
SM00534\"[346-531]TMUTSac
InterPro
IPR002625
Domain
Smr protein/MutS2 C-terminal
PF01713\"[765-840]TSmr
PS50828\"[765-840]TSMR
InterPro
IPR005747
Family
MutS 2 protein
PIRSF005814\"[12-840]TMutS_YshD
InterPro
IPR007696
Domain
MutS III
SM00533\"[15-326]TMUTSd
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[302-532]TG3DSA:3.40.50.300
PTHR11361\"[351-672]TPTHR11361
PTHR11361:SF14\"[351-672]TPTHR11361:SF14
SSF46966\"[142-668]TSpectrin
SSF48334\"[24-301]TSSF48334
SSF52540\"[302-531]TSSF52540


","BeTs to 7 clades of COG1193COG name: MutS-like ATPases involved in mismatch repair, family 1Functional Class: LThe phylogenetic pattern of COG1193 is --tk-qvc-b--uj--o----Number of proteins in this genome belonging to this COG is 2","***** IPB000432 (DNA mismatch repair protein MutS family) with a combined E-value of 3.1e-39. IPB000432B 350-381 IPB000432C 391-439 IPB000432D 462-472 IPB000432E 493-526","Residues 288-526 are 43% similar to a (PROTEIN DNA REPAIR ATP-BINDING DNA-BINDING MISMATCH MUTS) protein domain (PD001263) which is seen in MUS2_BACSU.Residues 688-839 are 30% similar to a (MUTS2 PROTEIN ATP-BINDING DNA-BINDING) protein domain (PD092883) which is seen in MUS2_BORBU.Residues 17-246 are 30% similar to a (MUTS2 PROTEIN ATP-BINDING DNA-BINDING) protein domain (PD151475) which is seen in MUS2_BACSU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Apr 26 15:40:43 MDT 2001","Mon Jan 5 15:26:30 2004","Wed Mar 28 16:31:40 MST 2001","Fri Feb 23 15:59:09 MST 2001","Fri Feb 23 15:59:09 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG0350 is similar to two DNA mismatch repair proteins; residues 24-528 are 21% similar to PG0084 and residues 252-471 are 28% similar to PG0954.","Mon Apr 2 13:40:44 MDT 2001","Fri Feb 23 15:59:09 MST 2001","-46% similar to PDB:1EWQ CRYSTAL STRUCTURE TAQ MUTS COMPLEXED WITH A HETERODUPLEX DNA AT 2.2 A RESOLUTION (E_value = 3.2E_17);-46% similar to PDB:1EWR CRYSTAL STRUCTURE OF TAQ MUTS (E_value = 3.2E_17);-46% similar to PDB:1FW6 CRYSTAL STRUCTURE OF A TAQ MUTS-DNA-ADP TERNARY COMPLEX (E_value = 3.2E_17);-46% similar to PDB:1NNE Crystal Structure of the MutS-ADPBeF3-DNA complex (E_value = 3.2E_17);-43% similar to PDB:1NG9 E.coli MutS R697A: an ATPase-asymmetry mutant (E_value = 5.5E_17);","","","Residues 302 to 532 (E-value = 1e-12) place PG0350 in the MutS_V family which is described as MutS domain V (PF00488)Residues 765 to 840 (E-value = 1.1e-20) place PG0350 in the Smr family which is described as Smr domain (PF01713)","Mon Jan 5 15:26:30 2004","34540212","","","","","","1","","","PG0384" "PG0351","418919","419107","189","ATGATCGTAGTTCCAGTTAAAGAAGGCGAGAACATCGAAAGAGCACTGAAACGCTTCAAAAGAAAGTTTGAAAAAACCGGAGCAGTACGCGAATTGCGTGCTCGTCAGGCTTTTGAAAAGCCCTCGGTGGCCAAGCGCAAGAAGATGCAAAAAGCCATCTACGTGAAGCAGCTTCAGGTTGCCGAAGAA","11.18","0.00","7397","MIVVPVKEGENIERALKRFKRKFEKTGAVRELRARQAFEKPSVAKRKKMQKAIYVKQLQVAEE","previously defined as: 419209 418835","TIGR ID: PG0385","30S ribosomal protein S21","Cytoplasm","Numerous hits using gapped BLAST all to ribosomal protein S21, including residues 4-42 are 58% similar to gi|710340|gb|AAB60205.1| (U20669) ribosomal protein S21 of Myxococcus xanthus and residues 1-63 are 36% similar to gi|12517644|gb|AAG58199.1|AE005535_11 (AE005535) 30S ribosomal subunit protein S21 of E. coli.","
InterPro
IPR001911
Family
Ribosomal protein S21
PD005521\"[15-52]TRibosomal_S21
PR00976\"[5-13]T\"[13-22]T\"[25-35]T\"[37-47]TRIBOSOMALS21
PF01165\"[3-57]TRibosomal_S21
TIGR00030\"[2-56]TS21p
PS01181\"[13-25]TRIBOSOMAL_S21


","BeTs to 9 clades of COG0828COG name: Ribosomal protein S21 Functional Class: J The phylogenetic pattern of COG0828 is -----q-ceb-hujgpolinx Number of proteins in this genome belonging to this COG is 1","","","","Tue Jul 3 16:44:44 MDT 2001","Tue Jul 3 16:44:44 MDT 2001","Tue Jul 3 16:44:44 MDT 2001","Tue Jul 3 16:44:44 MDT 2001","Tue Jul 3 16:50:43 MDT 2001","Tue Jul 3 16:44:44 MDT 2001","Tue Jul 3 16:44:44 MDT 2001","Tue Jul 3 16:44:44 MDT 2001","Tue Jul 3 16:50:43 MDT 2001","Tue Jul 3 16:55:18 MDT 2001","Tue Jul 3 16:44:44 MDT 2001","Thu Jul 5 11:34:08 MDT 2001","Tue Jul 3 16:59:42 MDT 2001","Thu Jul 5 10:16:50 MDT 2001","Tue Jul 3 17:04:02 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Jul 5 09:38:32 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 3 to 57 (E-value = 2.2e-13) place PG0351 in the Ribosomal_S21 family which is described as Ribosomal protein S21 (PF01165)","Tue Jul 3 17:04:02 MDT 2001","34540213","","","","","","1","","","PG0385" "PG0352","419187","420386","1200","ATGAATGAAACACCCGACACCATCGAAAGATTCCTCTATTATCTACGCTACGAAGTTCACGCGTCAGAACGAACCGTTTGTGACTATGCACAAGATTTGAATCGCTATGCCGCTTTCTTCAGTGAACACACGGGAGAAGTATTCGAGCCAAGCGAACGCGACAAGGATGTCGCGCGCGCTTGGCTCTTCTCTTTAATGGAAGCCGGACAAAAAAGCTCTTCCGTTCAGCGCAGACTGAGCGCGTTGAAAAGCTTTTACAAATACATGGTCAAAATCGGGCTTATTGGGCAAAGTCCTGTCCGAATGCTGAGGGGACCGAAGAAAGAGAGGCCGCTACCTGTTTTCGTCCCGAACAATGAAATGGAAAAAGTGCTGAATAAGCCCATCCGTGAAGATGATTTCGAGGCCGTACGGGACAGACTGATTCTGGAGACACTGTATGAAGTGGGTTTGCGGCGTTCCGAAATAGCCACTCTCAAAGACAGCGCGGTAGAAGACAAGGCCGGCTGCATACGTATCATCGGCAAAAGGAATAAAGAGCGAATAGTACCTTTCGGAAAACGTCTGCAAGATATGATAGACAACTATCGGAATATTCGTGAAGAAAAAGTAGGGAAATCTGATTTTTTTTTCGTTTCTTTGGATGGCAGACCACTGACAGGTGAAGTGGTCTACAAGATAGTTCGTACGGCATTGGCAAACGTACCGCACCTGACCAAGAGGAGTCCGCATGTTCTGAGACACAGCTTCGCCACCGAAATGCTCAACCACGGAGCAGATCTGATATCGGTCAAAGAACTTTTAGGGCACGACAGCCTTTCTACGACGGTGCAATACACGCATATTTCGTTCGAACAACTTAGACAGATGTATAACGCTCATCCAAGGGCAAAAAAAGAAACGACCATGACAGATGTAAGAATCCAAGCTCTGCATTTCGATGCTACCGACCAACTGAAAGATTTTGTACAGAAGAAAATATCCAAGCTGAATCGCTTGTCCGATGGAATAACGGGAGCCGAAGTCGTCCTCAAGCTCGTCAAGCCTGAGACCGTACAAAACAAAGAAGCATCTATCAGGCTCTATATCCCCGGCGACGACTTGTTCGCGGAAAAGATAGCAGACACCTTTGAGGAAGCTATTGATCTGACAGTCGATGCACTGAAAAGACAGATCGAAAAAAGGAAAGAACAGAGAAAA","9.80","9.36","46198","MNETPDTIERFLYYLRYEVHASERTVCDYAQDLNRYAAFFSEHTGEVFEPSERDKDVARAWLFSLMEAGQKSSSVQRRLSALKSFYKYMVKIGLIGQSPVRMLRGPKKERPLPVFVPNNEMEKVLNKPIREDDFEAVRDRLILETLYEVGLRRSEIATLKDSAVEDKAGCIRIIGKRNKERIVPFGKRLQDMIDNYRNIREEKVGKSDFFFVSLDGRPLTGEVVYKIVRTALANVPHLTKRSPHVLRHSFATEMLNHGADLISVKELLGHDSLSTTVQYTHISFEQLRQMYNAHPRAKKETTMTDVRIQALHFDATDQLKDFVQKKISKLNRLSDGITGAEVVLKLVKPETVQNKEASIRLYIPGDDLFAEKIADTFEEAIDLTVDALKRQIEKRKEQRK","419187 420386","TIGR ID: PG0386","recombinase/integrase","Cytoplasm","Shares 37% identity at residues 9 to 300 with gbAAF89877.1 (AF173870), a putative site-specific recombinase XerC in Staphylococcus aureus.Shares 37% identity at residues 8 to 297 with dbjBAB06184.1 (AP001515), an integrase/recombinase in Bacillus halodurans.Shares 33% identity at residues 8 to 297 with gbAAC64162.1 (AF093548), a tyrosine recombinase XerD in Staphylococcus aureus.","
InterPro
IPR002104
Domain
Integrase, catalytic core, phage
PF00589\"[125-289]TPhage_integrase
InterPro
IPR003489
Domain
Sigma 54 modulation protein/ribosomal protein S30EA
PF02482\"[305-400]TRibosomal_S30AE
InterPro
IPR004107
Domain
Integrase, N-terminal SAM-like, phage
PF02899\"[8-93]TPhage_integr_N
InterPro
IPR010998
Domain
Integrase, Lamba-type, N-terminal
SSF47823\"[4-117]TL_intgrse_like_N
InterPro
IPR011010
Domain
DNA breaking-rejoining enzyme, catalytic core
SSF56349\"[109-296]TDNA_brk_join_enz
InterPro
IPR011931
Family
Tyrosine recombinase XerC
TIGR02224\"[9-299]Trecomb_XerC
InterPro
IPR013762
Domain
Integrase-like, catalytic core, phage
G3DSA:1.10.443.10\"[115-292]TPhage_intgr_like
noIPR
unintegrated
unintegrated
G3DSA:1.10.150.130\"[3-103]TG3DSA:1.10.150.130
G3DSA:3.30.160.100\"[305-399]TG3DSA:3.30.160.100
SSF69754\"[304-400]TSSF69754


","BeTs to 13 clades of COG0582COG name: IntegraseFunctional Class: LThe phylogenetic pattern of COG0582 is aMtK-qvcEBRHUJ---LINXNumber of proteins in this genome belonging to this COG is 8","***** PF00589 (\"Phage\" integrase family) with a combined E-value of 8.4e-09. PF00589A 149-156 PF00589B 243-252 PF00589C 268-279***** BP03440 (PROTEIN SIGMA MODULATION PROBABLE RIBO) with a combined E-value of 1.6e-06. BP03440A 304-335 BP03440B 375-398","Residues 208-291 are 47% similar to a (INTEGRASE DNA PROTEIN RECOMBINATION INTEGRATION PLASMID) protein domain (PD000437) which is seen in CODV_BACSU.Residues 99-187 are 39% similar to a (PROTEIN INTEGRASE/RECOMBINASE DNA) protein domain (PD000548) which is seen in XERD_SALTY.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Sun Feb 27 05:43:18 2005","Sun Feb 27 05:43:18 2005","Sun Feb 27 05:43:18 2005","Sun Feb 27 05:44:40 2005","Wed Feb 21 16:41:30 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Shares 31% identity with PG1510, an integrase/recombinase (XerD-related) at residues 9 to 296.","Wed Feb 21 16:41:30 MST 2001","Sun Feb 27 05:43:18 2005","-55% similar to PDB:1A0P SITE-SPECIFIC RECOMBINASE, XERD (E_value = 1.2E_37);-42% similar to PDB:2A3V Structural basis for broad DNA-specificity in integron recombination (E_value = 1.5E_11);","","","Residues 8 to 94 (E-value = 1.7e-09) place PG0352 in the Phage_integr_N family which is described as Phage integrase, N-terminal SAM-like domain (PF02899)Residues 116 to 289 (E-value = 5.2e-38) place PG0352 in the Phage_integrase family which is described as Phage integrase family (PF00589)Residues 305 to 400 (E-value = 1.4e-05) place PG0352 in the Ribosomal_S30AE family which is described as Sigma 54 modulation protein / S30EA ribosomal protein (PF02482)","Sun Feb 27 05:43:18 2005","34540214","","","","","","1","","","PG0386" "PG0353","420783","421967","1185","ATGGCAAAAGAGCATTTTAACAGATCGAAACCCCACGTTAACGTTGGTACGATCGGACACGTGGACCACGGTAAGACTACCTTGACGGCTGCAATCACAACTGTGTTGGCAAAGAGGGGTCTTTCAGAACTCCGTTCATTTGATTCAATTGATAACGCTCCCGAAGAAAAGGAACGTGGTATCACGATTAATACTTCACACGTTGAATACCAAACAGCTAATCGTCACTACGCTCACGTAGACTGTCCGGGTCACGCCGACTATGTGAAGAACATGGTTACCGGTGCTGCTCAGATGGACGGTGCTATAATCGTTGTAGCAGCTACAGACGGCCCTATGCCTCAGACTCGCGAGCACATCCTTTTGGCTCGTCAGGTAAACGTTCCTCGTCTGGTTGTTTTCATGAACAAATGTGACATGGTAGACGATGAAGAGATGCTCGAGCTTGTTGAAATGGACATGCGCGAACTCCTTTCTTTCTACGATTTCGATGGTGACAATACCCCTATCATCCGTGGTTCTGCTCTGGGCGCTTTGAATGGAGAGCCTCAGTGGGAAGACAAGGTGATGGAGCTTATGGAAGCTGTTGACAACTGGGTTCCCCTGCCAGAGCGCGATATCGACAAACCGTTCTTGATGCCGGTTGAAGACGTGTTCTCTATCACGGGTCGTGGTACGGTTGCTACAGGACGTATCGAAACCGGTATCGTGAAGACCGGTGACGAAGTTCAGATCATCGGCCTCGGTGCAGAAGGAATGAAGTCGGTTGTTACGGGTGTTGAAATGTTCCGTAAGATTCTTGACGAAGGTCAGGCTGGTGACAACGTTGGTCTCCTCCTGCGTGGTATCGATAAGGATCAGATCAAGCGTGGTATGGTTATCTCTCACCCGGGTAAGATTACTCCTCACAAGAGATTTAAGGCCGAGGTTTATATCTTGAAGAAAGAAGAAGGTGGTCGCCACACTCCTTTCCACAACAAATATCGTCCGCAGTTCTACATCCGTACGCTTGACGTGACCGGTGAAATCACTCTTCCCGAAGGAACAGAAATGGTTATGCCCGGTGACAACGTAACGATCACTGTAGAACTCATCTACCCGGTTGCATGTAACGTAGGTCTCCGCTTCGCTATCCGTGAAGGTGGTCGTACGGTAGGTGCCGGTCAGATTACAGAGCTCATCGAC","5.30","-12.97","43688","MAKEHFNRSKPHVNVGTIGHVDHGKTTLTAAITTVLAKRGLSELRSFDSIDNAPEEKERGITINTSHVEYQTANRHYAHVDCPGHADYVKNMVTGAAQMDGAIIVVAATDGPMPQTREHILLARQVNVPRLVVFMNKCDMVDDEEMLELVEMDMRELLSFYDFDGDNTPIIRGSALGALNGEPQWEDKVMELMEAVDNWVPLPERDIDKPFLMPVEDVFSITGRGTVATGRIETGIVKTGDEVQIIGLGAEGMKSVVTGVEMFRKILDEGQAGDNVGLLLRGIDKDQIKRGMVISHPGKITPHKRFKAEVYILKKEEGGRHTPFHNKYRPQFYIRTLDVTGEITLPEGTEMVMPGDNVTITVELIYPVACNVGLRFAIREGGRTVGAGQITELID","420783 421967","TIGR ID: PG0387","elongation factor Tu","Cytoplasm","This sequence is similar to CT322 and BT2740.Numerous significant hits in gapped BLAST to translation elongation factor Tu; e.g. residues 1-395 are 99% similar to AB035466 of Bacteroides forsythus, residues 1-395 are 88% similar to B60663 of Bacteroides fragilis, residues 1-395 are 78% similar to X77036 of Taxeobacter ocellatus.PG0353 is equivalent to AB035462, EF-Tu of Porphyromonas gingivalis in GenBANK.","
InterPro
IPR000795
Domain
Protein synthesis factor, GTP-binding
PR00315\"[14-27]T\"[58-66]T\"[78-88]T\"[94-105]T\"[131-140]TELONGATNFCT
PF00009\"[10-204]TGTP_EFTU
PS00301\"[51-66]TEFACTOR_GTP
InterPro
IPR004160
Domain
Translation elongation factor EFTu/EF1A, C-terminal
PF03143\"[300-394]TGTP_EFTU_D3
InterPro
IPR004161
Domain
Translation elongation factor EFTu/EF1A, domain 2
PF03144\"[225-295]TGTP_EFTU_D2
InterPro
IPR004541
Family
Translation elongation factor EFTu/EF1A, bacterial and organelle
PTHR23115:SF31\"[1-329]TTransl_elong_EFTu/EF1A_bac/org
TIGR00485\"[1-395]TEF-Tu
InterPro
IPR005225
Domain
Small GTP-binding protein domain
TIGR00231\"[10-177]Tsmall_GTP
InterPro
IPR009000
Domain
Translation elongation and initiation factors/Ribosomal, beta-barrel
SSF50447\"[203-303]TTranslat_factor
InterPro
IPR009001
Domain
Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal
SSF50465\"[303-395]TElong_init_C
noIPR
unintegrated
unintegrated
G3DSA:2.40.30.10\"[206-336]T\"[340-395]TG3DSA:2.40.30.10
G3DSA:3.40.50.300\"[2-203]TG3DSA:3.40.50.300
PTHR23115\"[1-329]TPTHR23115
SSF52540\"[7-226]TSSF52540


","BeTs to 17 clades of COG0050COG name: GTPases - translation elongation factors and sulfate adenylate transferase subunit 1Functional Class: J,EThe phylogenetic pattern of COG0050 is AMTKYQvcEbRHujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB000795 (GTP-binding elongation factor) with a combined E-value of 4.6e-49. IPB000795A 14-29 IPB000795B 80-111 IPB000795C 115-139***** IPB000178 (Initiation factor 2) with a combined E-value of 3.3e-11. IPB000178B 11-52 IPB000178C 77-123","Residues 184-309 are 77% similar to a (FACTOR PROTEIN ELONGATION GTP-BINDING BIOSYNTHESIS TU) protein domain (PD000168) which is seen in EFTU_BACFR.Residues 310-394 are 92% similar to a (ELONGATION FACTOR PROTEIN BIOSYNTHESIS GTP-BINDING TU) protein domain (PD000655) which is seen in EFTU_BACFR.Residues 14-61 are 50% similar to a (ELONGATION FACTOR TU EF-TU) protein domain (PD187884) which is seen in EFTU_CYAPA.Residues 1-61 are 72% similar to a (PROTEIN GTP-BINDING FACTOR ELONGATION BIOSYNTHESIS TU) protein domain (PD000122) which is seen in EFTU_BACFR.Residues 57-137 are 49% similar to a (PROTEIN GTP-BINDING LIPOPROTEIN PRENYLATION RAS-RELATED) protein domain (PD000015) which is seen in EF1A_THEAC.Residues 62-138 are 97% similar to a (PROTEIN GTP-BINDING FACTOR BIOSYNTHESIS ELONGATION TU) protein domain (PD000134) which is seen in EFTU_BACFR.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Mar 22 15:31:35 MST 2000","Fri Dec 19 09:52:40 2003","Wed Mar 14 16:33:02 MST 2001","Wed Mar 14 16:33:02 MST 2001","Wed Mar 14 16:33:02 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG0353 shows 25-29% similarity to:PG0188 translation elongation factor G proteinPG0230 translation initiation factor IF-2PG0553 GTP-binding elongation factor family proteinPG1097 GTP-binding protein (possible membrane protein)PG1692 elongation factor G protein.","Wed Mar 14 16:33:02 MST 2001","Mon Jul 28 16:34:28 2008","-77% similar to PDB:1DG1 WHOLE, UNMODIFIED, EF-TU(ELONGATION FACTOR TU). (E_value = 1.5E_149);-77% similar to PDB:1OB2 E. COLI ELONGATION FACTOR EF-TU COMPLEXED WITH THE ANTIBIOTIC KIRROMYCIN, A GTP ANALOG, AND PHE-TRNA (E_value = 2.6E_149);-77% similar to PDB:1D8T CRYSTAL STRUCTURE OF ELONGATION FACTOR, TU (EF-TU-MGGDP) COMPLEXED WITH GE2270A, A THIAZOLYL PEPTIDE ANTIBIOTIC (E_value = 5.7E_149);-77% similar to PDB:1EFC INTACT ELONGATION FACTOR FROM E.COLI (E_value = 5.7E_149);-77% similar to PDB:1LS2 Fitting of EF-Tu and tRNA in the Low Resolution Cryo-EM Map of an EF-Tu Ternary Complex (GDP and Kirromycin) Bound to E. coli 70S Ribosome (E_value = 5.7E_149);","","","Residues 10 to 204 (E-value = 1.1e-99) place PG0353 in the GTP_EFTU family which is described as Elongation factor Tu GTP binding domain (PF00009)Residues 225 to 295 (E-value = 5.5e-24) place PG0353 in the GTP_EFTU_D2 family which is described as Elongation factor Tu domain 2 (PF03144)Residues 300 to 394 (E-value = 1.2e-57) place PG0353 in the GTP_EFTU_D3 family which is described as Elongation factor Tu C-terminal domain (PF03143)","Fri Dec 19 09:52:40 2003","34540215","","Nagai,A. and Itoh,N. EF-Tu sequence of Porphyromonas gingivalis. (1999) In press.","","Wed Jun 6 11:57:11 MDT 2001","","1","","","PG0387" "PG0354","422084","422329","246","GTGTCGGGAGTTCGAGTCTCTCAACCCGTGCAAAATTTTCAATCAATGAAACTATTCAATAAAATAGGGACTTCGATCACGGATTCCTATAATGAGCTTGTACATAAGGTTTCTTGGCCTACCAGATCCGAGCTGACAAACAGTGCTGTAGTAGTGATGATTGCTTCCTTAATCATTGCTCTTTTTGTGTTTGTTGTCGATACTGCTTTCGAACGGATCATGGAACTGGTATATAAATTGGTGTTC","9.30","1.22","9237","VSGVRVSQPVQNFQSMKLFNKIGTSITDSYNELVHKVSWPTRSELTNSAVVVMIASLIIALFVFVVDTAFERIMELVYKLVF","422084 422329","Translocase subunit A, secA, is PG0468.NO TIGR ID corresponds to this gene.","conserved hypothetical protein(possible translocase secE subunit)","Periplasm, Inner membrane, Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR001901
Family
Protein secE/sec61-gamma protein
PF00584\"[21-78]TSecE
InterPro
IPR005807
Family
SecE subunit of protein translocation complex
TIGR00964\"[22-79]TsecE_bact: preprotein translocase, SecE sub
noIPR
unintegrated
unintegrated
tmhmm\"[45-65]?transmembrane_regions


","BeTs to 9 clades of COG0690COG name: Preprotein translocase subunit SecEFunctional Class: NThe phylogenetic pattern of COG0690 is -----qvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB001901 (Protein secE/sec61-gamma protein) with a combined E-value of 9.5e-07. IPB001901 26-67","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Tue Mar 26 16:05:35 2002","Wed Feb 21 16:50:49 MST 2001","","Tue Mar 26 16:05:35 2002","Wed Feb 21 16:50:49 MST 2001","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Feb 21 16:50:49 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 21 to 78 (E-value = 4.4e-08) place PG0354 in the SecE family which is described as SecE/Sec61-gamma subunits of protein translocation complex (PF00584)","Tue Mar 26 16:05:35 2002","","","","","","","1","","","" "PG0355","422354","422890","537","ATGACAAACGCAGAGAAAAAATTCTATGTTCTCCGTGCCATTAGTGGTAAGGAGAACAAAGTGCGTGAATATCTGGAAGCAGAAATGAAGCACTCCGATTTAGGAAATTATCTCTTTCAGGTTCTCATTCCCACTGAAAAAGTGATGACGCAGCGTGCCGGTAAAAGGGTTGTAAAAGAACGCCCTTACCTGCCCGGATACGTATTGGTCGAAGCTGTTTTGGTCGGTGAAGTAGAGCACCGGCTACGCAGTACACCCAACGTGATTGGGTTCTTAGGTGACGGTCGTCCGGCACCTCTTCATCCGTCCGAAGTTAGTCGAATCTTAGGAAAAGTTGACCAGCTGGACAGTGAAGACGAAGAATATGAACTCAGCTTTATGGTGGGAGAAACCGTGAAAGTATCAGATGGTGCTTTTGCCGGTTTCGATGCGATAGTGGAAGAGGTAAATCCCGACAAGAAAAAGCTCAAGGTGATGGTGAAGATTTTCGGAAGAAAAACTGCACTGGAGCTTTCCTATGTACAGGTTGAGAAAGAA","6.30","-1.27","20201","MTNAEKKFYVLRAISGKENKVREYLEAEMKHSDLGNYLFQVLIPTEKVMTQRAGKRVVKERPYLPGYVLVEAVLVGEVEHRLRSTPNVIGFLGDGRPAPLHPSEVSRILGKVDQLDSEDEEYELSFMVGETVKVSDGAFAGFDAIVEEVNPDKKKLKVMVKIFGRKTALELSYVQVEKE","422354 422890","TIGR ID: PG0389","transcription antiterminator","Cytoplasm","This sequence is similar to CT320.Numerous moderately significant hits in gapped BLAST to transcription antitermination protein NusG; e.g. residues 6-178 are 43% similar to AE002371 of Neisseria meningitidis, residues 5-178 are 43% similar to AE004120 of Vibrio cholerae, residues 5-178 are 42% similar to AE005629 of Escherichia coli.","
InterPro
IPR001062
Family
Bacterial transcription antitermination protein NusG
PR00338\"[60-72]T\"[137-152]T\"[155-171]TNUSGTNSCPFCT
PF02357\"[6-103]TNusG
TIGR00922\"[9-179]TnusG
InterPro
IPR005824
Domain
KOW
PF00467\"[126-163]TKOW
InterPro
IPR006645
Domain
NGN
SM00738\"[5-112]TNGN
InterPro
IPR006646
Domain
KOW (Kyrpides, Ouzounis, Woese) motif
SM00739\"[125-152]TKOW
InterPro
IPR008991
Domain
Translation protein SH3-like
SSF50104\"[122-179]TTransl_SH3_like
InterPro
IPR014722
Domain
Translation protein SH3-like, subgroup
G3DSA:2.30.30.30\"[117-179]TRibosomal_L2
noIPR
unintegrated
unintegrated
G3DSA:3.30.70.940\"[5-116]TG3DSA:3.30.70.940
SSF82679\"[5-116]TSSF82679


","BeTs to 11 clades of COG0250COG name: Transcription antiterminator NusG/RfaHFunctional Class: KThe phylogenetic pattern of COG0250 is amtkyqvcEbrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB001062 (Bacterial transcription antitermination protein, nusG) with a combined E-value of 1.7e-43. IPB001062A 8-26 IPB001062B 44-94 IPB001062C 97-109 IPB001062D 144-178","Residues 8-142 are 35% similar to a (TRANSCRIPTION PROTEIN ANTITERMINATION TERMINATION NUSG) protein domain (PD003474) which is seen in NUSG_ECOLI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Mar 22 15:30:04 MST 2000","Wed Jun 6 12:04:04 MDT 2001","Wed Jun 6 12:04:04 MDT 2001","Wed Jun 6 12:04:04 MDT 2001","Wed Jun 6 12:04:04 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Jun 6 12:04:04 MDT 2001","-52% similar to PDB:1M1G Crystal Structure of Aquifex aeolicus N-utilization substance G (NusG), Space Group P2(1) (E_value = 1.7E_14);-52% similar to PDB:1M1H Crystal structure of Aquifex aeolicus N-utilization substance G (NusG), Space group I222 (E_value = 1.7E_14);-52% similar to PDB:1NPP CRYSTAL STRUCTURE OF AQUIFEX AEOLICUS NUSG IN P2(1) (E_value = 1.7E_14);-52% similar to PDB:1NPR CRYSTAL STRUCTURE OF AQUIFEX AEOLICUS NUSG IN C222(1) (E_value = 1.7E_14);-51% similar to PDB:1NZ8 Solution Structure of the N-utilisation substance G (NusG) N-terminal (NGN) domain from Thermus thermophilus (E_value = 5.1E_11);","","","Residues 5 to 48 (E-value = 4.6e-09) place PG0355 in the NusG family which is described as Transcription termination factor nusG (PF02357)Residues 126 to 163 (E-value = 1.5e-08) place PG0355 in the KOW family which is described as KOW motif (PF00467)","Wed Jun 6 12:04:04 MDT 2001","34540216","","","","","","1","","","PG0389" "PG0356","422962","423396","435","ATGGCTAAAGAAGTTGCTGGACAAATCAAATTGCAAATAAAAGGTGGTGCAGCTAATCCCTCACCCCCCGTTGGGCCTGCACTTGGTGCAAAGGGCATCAACATCATGGAGTTTTGCAAGCAATTTAATGCCAGAACCCAAGACAAAGCCGGCAAAGTATTGCCTGTAGTAATTACGTACTATGCCGATAAGTCTTTTGATTTTATCGTAAAAACTCCTCCTGTTGCTATTCAACTCCTTGAAGCTAGCAAACAGAAGAGTGGTTCTGCAGAACCTAATCGTAAGAAGGTAGCAGAAATCACATGGGAGCAAGTACGTACGATCGCAGAAGATAAGCTTGTCGATTTGAATTGCTTCGATATCAAAGCTGCCATGAAAATGGTAGCCGGTACTGCTCGAAGCATGGGTATCGCGATTAAAGGGGACTTCCCGGAA","10.10","5.89","15591","MAKEVAGQIKLQIKGGAANPSPPVGPALGAKGINIMEFCKQFNARTQDKAGKVLPVVITYYADKSFDFIVKTPPVAIQLLEASKQKSGSAEPNRKKVAEITWEQVRTIAEDKLVDLNCFDIKAAMKMVAGTARSMGIAIKGDFPE","422962 423396","TIGR ID: PG0390","50S ribosomal protein L11","Periplasm, Cytoplasm","This sequence is similar to CT319.Numerous significant hits in gapped BLAST to 50S ribosomal protein L11; e.g. residues 1-140 are 60% similar to AP001507 of Bacillus halodurans, residues 3-140 are 60% similar to AE006962 of Mycobacterium tuberculosis, residues 3-140 are 59% similar to AL583923 of Mycobacterium leprae.","
InterPro
IPR000911
Family
Ribosomal protein L11
PD001367\"[9-72]TRibosomal_L11
G3DSA:1.10.10.250\"[72-141]TRibosomal_L11
PIRSF002179\"[7-145]TRplL11_L12
PTHR11661\"[1-143]TRibosomal_L11
PF00298\"[71-139]TRibosomal_L11
PF03946\"[8-66]TRibosomal_L11_N
SM00649\"[9-140]TRL11
PS00359\"[126-141]TRIBOSOMAL_L11
SSF46906\"[66-141]TRibosomal_L11
SSF54747\"[8-70]TRibosomal_L11
InterPro
IPR006519
Family
Ribosomal protein L11, bacterial
PTHR11661:SF1\"[1-143]TRibosom_L11_bac
TIGR01632\"[3-141]TL11_bact
noIPR
unintegrated
unintegrated
G3DSA:3.30.1550.10\"[2-71]TG3DSA:3.30.1550.10
PIRSF500072\"[1-143]TRpl11


","BeTs to 17 clades of COG0080COG name: Ribosomal protein L11Functional Class: JThe phylogenetic pattern of COG0080 is amtkYqvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB000911 (Ribosomal protein L11) with a combined E-value of 2e-53. IPB000911A 9-41 IPB000911B 54-92 IPB000911C 107-140 IPB000911A 13-45","Residues 9-140 are 60% similar to a (PROTEIN RIBOSOMAL RNA-BINDING L11) protein domain (PD001367) which is seen in RL11_BACSU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Mar 22 15:28:53 MST 2000","Wed Jun 6 12:07:27 MDT 2001","Wed Jun 6 12:07:27 MDT 2001","Wed Jun 6 12:07:27 MDT 2001","Wed Jun 6 12:07:27 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Jun 6 12:07:27 MDT 2001","-76% similar to PDB:1EG0 FITTING OF COMPONENTS WITH KNOWN STRUCTURE INTO AN 11.5 A CRYO-EM MAP OF THE E.COLI 70S RIBOSOME (E_value = 3.3E_43);-76% similar to PDB:1GIY CRYSTAL STRUCTURE OF THE RIBOSOME AT 5.5 A RESOLUTION. THIS FILE, 1GIY, CONTAINS THE 50S RIBOSOME SUBUNIT. THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES ARE IN THE FILE 1GIX (E_value = 3.3E_43);-76% similar to PDB:1MJ1 FITTING THE TERNARY COMPLEX OF EF-Tu/tRNA/GTP AND RIBOSOMAL PROTEINS INTO A 13 A CRYO-EM MAP OF THE COLI 70S RIBOSOME (E_value = 3.3E_43);-76% similar to PDB:1ML5 Structure of the E. coli ribosomal termination complex with release factor 2 (E_value = 3.3E_43);-76% similar to PDB:1YL3 Crystal structure of 70S ribosome with thrS operator and tRNAs. Large subunit. The coordinates for the small subunit are in the pdb entry 1YL4. (E_value = 3.3E_43);","","","Residues 8 to 66 (E-value = 2.9e-32) place PG0356 in the Ribosomal_L11_N family which is described as Ribosomal protein L11, N-terminal domain (PF03946)Residues 71 to 139 (E-value = 4.1e-31) place PG0356 in the Ribosomal_L11 family which is described as Ribosomal protein L11, RNA binding domain (PF00298)","Wed Jun 6 12:07:27 MDT 2001","34540217","","","","","","1","","","PG0390" "PG0357","423420","424115","696","ATGAGCAAACTAACAAAAAAACAGAAGTTAGCCTTTAGCAAGATTGAACCCGGGAAAGCATACACAATATCGGAGGCATCGGCCTTGGTGAAAGAGATCACCACGACCAATTTTGATGCATCTGTGGATATTGATGTGCGCTTGGGTGTAGACCCCCGAAAGGCTAACCAGATGGTGCGTGGCGTTGTAACGCTTCCGCACGGAACTGGAAAGCAGATCCGCGTTCTGGCATTGTGCTCTCCTGATAAAGAAGCTGAAGCTAAAGAAGCTGGTGCTGACTATGTAGGTCTTGACGAATACATAGAAAAAATAAAGGCTGGTTGGACTGACATAGACGTCATCATCACCATGCCTGCCATTATGGGTAAAATCGGTGCATTGGGACGTGTTTTAGGCCCTCGCGGATTGATGCCTAACCCTAAAAGCGGGACTGTAACCAATGATGTAGGTGCTGCTGTAAAAGAAGTGAAAGCCGGTAAGATTGATTTTAAAGTTGATAAAACCGGTATCGTTCATACATCGATAGGTAAAGTGTCATTCTCTGCGGACCAAATCCGCGATAATGCACGTGAGTTTATTAATACGATTATTAAACTCAAGCCTACTACAGCTAAGGGTACTTATATCAAAAGCATCTATCTTTCAAGTACTATGAGTTTCGGTATCAAAGTCGATCCTAAGACAGTGGATGAAAAT","10.20","8.43","24953","MSKLTKKQKLAFSKIEPGKAYTISEASALVKEITTTNFDASVDIDVRLGVDPRKANQMVRGVVTLPHGTGKQIRVLALCSPDKEAEAKEAGADYVGLDEYIEKIKAGWTDIDVIITMPAIMGKIGALGRVLGPRGLMPNPKSGTVTNDVGAAVKEVKAGKIDFKVDKTGIVHTSIGKVSFSADQIRDNAREFINTIIKLKPTTAKGTYIKSIYLSSTMSFGIKVDPKTVDEN","423420 424115","TIGR ID: PG0391","50S ribosomal protein L1","Cytoplasm, Periplasm","This sequence is similar to CT318 and BT2737.Numerous significant hits in gapped BLAST to 50S ribosomal protein L1; e.g. residues 1-225 are 54% similar to AJ300822 of Corynebacterium glutamicum, residues 1-226 are 48% similar to X81375 of Thermus thermophilus, residues 1-225 are 52% similar to AP003359 of taphylococcus aureus.","
InterPro
IPR002143
Family
Ribosomal protein L1
PD001314\"[14-226]TRibosomal_L1
PF00687\"[15-221]TRibosomal_L1
PS01199\"[121-139]TRIBOSOMAL_L1
InterPro
IPR005878
Family
Ribosomal protein L1, bacterial and chloroplast form
PTHR23105:SF5\"[21-225]TRibosom_L1_bac
TIGR01169\"[3-229]TrplA_bact
noIPR
unintegrated
unintegrated
G3DSA:3.30.190.20\"[2-228]TG3DSA:3.30.190.20
PTHR23105\"[21-225]TPTHR23105
SSF56808\"[6-228]TSSF56808


","BeTs to 17 clades of COG0081COG name: Ribosomal protein L1Functional Class: JThe phylogenetic pattern of COG0081 is amtkYqvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB002143 (Ribosomal protein L1) with a combined E-value of 8.5e-63. IPB002143A 50-90 IPB002143B 110-126 IPB002143C 127-140 IPB002143D 157-201 IPB002143E 209-224","Residues 23-224 are 52% similar to a (PROTEIN RIBOSOMAL L1 50S) protein domain (PD001314) which is seen in RL1_BACST.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Mar 22 15:27:43 MST 2000","Fri Dec 19 09:51:26 2003","Wed Jun 6 12:10:46 MDT 2001","Wed Jun 6 12:10:46 MDT 2001","Wed Jun 6 12:10:46 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Jun 6 12:10:46 MDT 2001","-70% similar to PDB:2J01 STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME COMPLEXED WITH MRNA, TRNA AND PAROMOMYCIN (PART 2 OF 4). THIS FILE CONTAINS THE 50S SUBUNIT FROM MOLECULE I. (E_value = 1.1E_62);-70% similar to PDB:2J03 STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME COMPLEXED WITH MRNA, TRNA AND PAROMOMYCIN (PART 4 OF 4). THIS FILE CONTAINS THE 50S SUBUNIT FROM MOLECULE II. (E_value = 1.1E_62);-70% similar to PDB:1EG0 FITTING OF COMPONENTS WITH KNOWN STRUCTURE INTO AN 11.5 A CRYO-EM MAP OF THE E.COLI 70S RIBOSOME (E_value = 2.0E_62);-70% similar to PDB:2HGJ Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons. This entry 2HGJ contains 50S ribosomal subunit. The 30S ribosomal subunit can be found in PDB entry 2HGI. (E_value = 2.0E_62);-70% similar to PDB:2HGQ Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex. This entry 2HGQ contains 50S ribosomal subunit. The 30S ribosomal subunit can be found in PDB entry 2HGP. (E_value = 2.0E_62);","","","Residues 15 to 221 (E-value = 4.3e-106) place PG0357 in the Ribosomal_L1 family which is described as Ribosomal protein L1p/L10e family (PF00687)","Wed Jun 6 12:10:46 MDT 2001","34540218","","","","","","1","","","PG0391" "PG0358","424134","424655","522","ATGAGAAAGGAAGATAAAGGTACAGTTATAAGGCAGTTGGCCAAATATATCGGCCAATACCCCCACTTCTACTTGACTGACATAGAAGCATTAAATGCTGAGAAAACATCAGAGCTCCGTCGCAACTGCAATAAAAACGGAGTGAAGTTGGTTATGGTGAAAAACACGCTTTTGCGTGCAGCCTTAGCAGCGAGTGATGTAGATTTCTCGTCATTGTATAGCTGTCTGAAAGGGAATACCGCTGTCATGTTCTGTGAAGTGGCTAATTCTCCGGCCAAAGTAATCAAGCAGTTTACAAAGGATACCAAAGGAGAAGGAAAGCCTTGGCTAAAAGCTGCATACGTGCAGGAAAGCTTCTACATTGGGAGGGAAAATCTCGATGCTTTGGTTTCGATCAAGAGCAAAAACGAACTCATCGCAGATGTTGTGGCATTGCTGCAGTCTCCGGCCAAGAACGTTATTGCATCTTTGCAGTCAGCAGGTCAAACGATCCATGGTGTGTTGAAGACCTTGGAAGAAAAA","10.00","7.33","19210","MRKEDKGTVIRQLAKYIGQYPHFYLTDIEALNAEKTSELRRNCNKNGVKLVMVKNTLLRAALAASDVDFSSLYSCLKGNTAVMFCEVANSPAKVIKQFTKDTKGEGKPWLKAAYVQESFYIGRENLDALVSIKSKNELIADVVALLQSPAKNVIASLQSAGQTIHGVLKTLEEK","424134 424655","TIGR ID: PG0392","50S ribosomal protein L10","Cytoplasm","Shares 25% similarity at residues 6 to 162 with gb|AAK05367.1|AE006359_5 (AE006359), a 50S ribosomal protein L10 in Lactococcus lactis subsp. lactis.Shares 29% similarity at residues 23 to 166 with pir||E75323, ribosomal protein L10 in Deinococcus radiodurans.Shares 28% similarity at residues 4 to 152 with dbj|BAB03840.1| (AP001507), a 50S ribosomal protein L10 in Bacillus halodurans.","
InterPro
IPR001790
Family
Ribosomal protein L10
PF00466\"[1-100]TRibosomal_L10


","BeTs to 14 clades of COG0244COG name: Ribosomal protein L10Functional Class: JThe phylogenetic pattern of COG0244 is amtkYqvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 4-162 are 23% similar to a (RIBOSOMAL PROTEIN ACIDIC P0) protein domain (PD001309) which is seen in RL10_BACSU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Feb 21 16:48:04 MST 2001","Wed Feb 21 16:48:04 MST 2001","Thu Apr 26 15:46:16 MDT 2001","","Wed Feb 21 16:48:04 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Feb 21 16:48:04 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 1 to 100 (E-value = 4.5e-07) place PG0358 in the Ribosomal_L10 family which is described as Ribosomal protein L10 (PF00466)","Thu Apr 26 15:46:16 MDT 2001","34540219","","","","","","1","","","PG0392" "PG0359","424700","425074","375","ATGGCAGACATTAAAGCTATTGCTGAACAACTGGTTAACTTGACAGTAAAAGAAGTTAGCGAACTCGCTACTATCCTGAAAGAAGAATATGGCATTGAGCCGGCAGCTGCTGCTGTTGCTGTAGCCGCTGCTCCTGGTGCTGCCGGTGCTGCAGCTGAAGAGGAGAAAACTTCTTTCGACGTAGTTCTTAAGAGTGCTGGAGCTGCAAAATTGCAGGTTGTGAAAGCTGTTAAAGAACAATGCGGTCTTGGCCTGAAAGAAGCAAAGGATCTCGTGGACGCAGCACCTTCTACCGTGAAGGAAGGCGTAGACAAAGCTACTGCTGAGGCACTGAAAAAGGCTCTCGAAGAAGCAGGTGCTGAAGTAGAACTGAAA","4.50","-7.04","12670","MADIKAIAEQLVNLTVKEVSELATILKEEYGIEPAAAAVAVAAAPGAAGAAAEEEKTSFDVVLKSAGAAKLQVVKAVKEQCGLGLKEAKDLVDAAPSTVKEGVDKATAEALKKALEEAGAEVELK","424700 425074","TIGR ID: PG0393","50S ribosomal protein L7/L12","Periplasm, Inner membrane, Cytoplasm","This sequence similar to CT316.Several weakly significant hits in gapped BLAST to 50S ribosomal protein L7/L12; e.g. residues 4-125 are 56% similar to AF027501 of Aquifex pyrophilus, residues 1-125 are 55% similar to AP002994 of Mesorhizobium loti, residues 2-125 are 60% similar to R5RFRA of Rhodobacter sphaeroides. The C-terminal portion of PG0359 also shows weak similarity to RNA polymerase beta of Escherichia coli (gi:223154).","
InterPro
IPR000206
Family
Ribosomal protein L7/L12
TIGR00855\"[1-125]TL12
InterPro
IPR008932
Domain
Ribosomal protein L7/L12, oligomerisation
SSF48300\"[2-61]TRibosomal_L12/7
InterPro
IPR013823
Domain
Ribosomal protein L7/L12, C-terminal
PD001326\"[66-104]TRibosomal_L12
PF00542\"[59-125]TRibosomal_L12
InterPro
IPR014719
Domain
Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like
G3DSA:3.30.1390.10\"[52-125]TRibosomal_L7/12_C/ClpS-like
noIPR
unintegrated
unintegrated
PTHR11809\"[2-125]TPTHR11809
SSF54736\"[58-125]TSSF54736


","BeTs to 13 clades of COG0222COG name: Ribosomal protein L7/L12Functional Class: JThe phylogenetic pattern of COG0222 is ----yqvCebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** PF00542 (Ribosomal protein L7/L12 C-terminal domain) with a combined E-value of 6.5e-35. PF00542A 5-36 PF00542B 54-69 PF00542C 70-109","Residues 59-103 are 71% similar to a (PROTEIN RIBOSOMAL 50S L7/L12) protein domain (PD001326) which is seen in RL7_HAEIN.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Mar 22 15:49:26 MST 2000","Wed Jun 6 12:19:27 MDT 2001","Wed Jun 6 12:19:27 MDT 2001","Wed Jun 6 12:19:27 MDT 2001","Wed Jun 6 12:19:27 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Jun 6 12:19:27 MDT 2001","-61% similar to PDB:1RQU NMR structure of L7 dimer from E.coli (E_value = 8.7E_14);-61% similar to PDB:1RQV Spatial model of L7 dimer from E.coli with one hinge region in helical state (E_value = 8.7E_14);-61% similar to PDB:2GYA Structure of the 50S subunit of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056 (E_value = 8.7E_14);-61% similar to PDB:2GYC Structure of the 50S subunit of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143 (E_value = 8.7E_14);-85% similar to PDB:1CTF STRUCTURE OF THE C-TERMINAL DOMAIN OF THE RIBOSOMAL PROTEIN L7/L12 FROM ESCHERICHIA COLI AT 1.7 ANGSTROMS (E_value = 1.6E_12);","","","Residues 59 to 125 (E-value = 6.8e-30) place PG0359 in the Ribosomal_L12 family which is described as Ribosomal protein L7/L12 C-terminal domain (PF00542)","Wed Jun 6 12:19:27 MDT 2001","34540220","","","","","","1","","","PG0393" "PG0360","425189","428995","3807","ATGACGCCGACTACAAACAACAAAAGAATCAACTTTGCTTCGATAAAAAATCCGCTTTTCTATCCGGACTTTCTCGAAGTTCAACTCAAGTCGTTCCATGACTTCCTTCAGTTAGATACTCCGCCCGAGAGGAGAAAAAAAGAAGGTCTTTATAAAGTTTTTGCGGAAAATTTTCCAATAACTGACACCCGTAATAACTTTGTCCTGGAATTCCTTGACTACTATATCGATCCCCCCAAGTATTCCATTGAGGAATGTCTTAGCAGGGGGCTCACCTATAGCGTCCCTCTGAAAGCTAAGCTAAAACTGTATTGTACGGATCCTGATCACGAAGATTTTGCGACCGTAATTCAGGACGTTTTTCTTGGCCCCATACCCTATATGACAAGTTCCGGCACATTTGTTATAAATGGAGCCGAGCGCGTCATTGTTTCCCAATTGCACCGTTCTCCGGGTGTATTCTTTGGGCAAAGTCTTCATACTAATGGTACCAAACTATATTCAGCGCGAATCATACCATTCAAAGGCTCATGGATTGAATTTGCTACGGACATTAACAATGTCATGTATGCATACATCGATAGAAAGAAGAAACTTCCTGTAACAACTCTTCTCCGTGCCATTGGTTTCGAAGCAGACAAAGACATTCTCGACATCTTCAATCTTGCCGAAGAGGTAAAAGTGACGAAGGCCAACCTGAAGAAATGTATAGGGCGCAAATTAGCAGCTCGCGTCATCAATACGTACATCGATGACCTCAGTGACGAAGACACTGGCGAAGTTGTTTCCATGGAGCGAATCACTGTCGTGGTGGACAGAGAGGTTGAACTGACAGAAGATAATATCGAGGCAATCCTCAACTCAAATACACAAACAATCCTACTGCACCGAAACGATTCGAATACTTCTGATTATAGTATTATATTCAACACTTTACAGAAGGATCCATGTAACTCGGAAAAAGAGGCTTTGTACTATGTATACAGGCAGCTCCGTAATGCAGAACCTGCAGACGATGCAAGTGCTAGAGAAGTAATAACGAATCTGTTTTTCTCTGATAAACGATACGACTTGGGCGATGTCGGACGCTATCGTATCAATAAGAAACTCAATTTGAATATTGATCCTGATATCAAAGTGCTGACCAATGAAGATATTATTGAGATCATCAAGTATCTTATTGAGTTAGTAAATTCCAAGGCATCAGTAGATGATATAGACCACTTGTCGAACCGTCGTGTTCGGACTGTCGGAGAGCAGCTTTACAACCAATTTGGTATTGGTTTGGCCCGTATGGCCAGGACAGTACGCGATCGAATGAATGTTCGCGATAATGAAGTTTTCACACCTATCGATTTGGTCAATGCTAAGACTATTTCCTCCGTTGTGAATTCTTTCTTTGGCACCAATGCCTTGTCGCAGTTCATGGATCAGACAAACCCATTGGCTGAAATAACGCATAAGCGACGTCTGTCGGCATTGGGCCCCGGAGGTCTATCGCGCGAACGGGCCGGCTTTGAAGTGCGAGACGTTCACTACACGCACTACGGTCGTCTATGCCCTATTGAAACACCTGAAGGACCTAATATCGGTCTGATCTCCTCCCTCTGCGTATACGCCAAAATCAGTGATTTGGGTTTTATTACAACACCATACCGGGAAGTAAAGAACGGCAAAGTAGATTTCTCCGACAATGGACTGAAATACTACACGGCAGAAGAAGAGGAAGAGAAGACCGTAGCACAAGGAAATGCGCCTCTTGACGAAAATGGTCGATTTGTCAGAGAACGAGTAAAAGCACGTTACGAGTCGGATTTCCCATTAGTTACACCGGATGAGGTCGACCTGATGGACGTTTCGCCTACTCAAATTGCTTCAATCGCAGCAGCTTTAATTCCCTTCTTGGAACACGACGATGCCAACCGTGCGTTGATGGGTTCTAACATGATGCGTCAGGCTGTTCCCCTACTAAGACCTGAATCTCCGATTGTTGGTACTGGTATAGAAGGAAAATTAGTGAAAGATTCTCGCACACAGATTGTGGCAGAGAGGGGCGGAGAGGTCGTTTTTGTCGATGCCTCGTGCATCAAAATTCGTTACGACAGAACAGCTGACGAAGAGTTTGTAAGTTTTGATGATGCAATCGTCACCTACTATCTCCCCAAATATCGCAAAACGAATCAGAGTACAACTATCGACTTGCATCCCATTTGCTCCAAAGGAGATAGAGTGGAGGCCGGTCAAATCCTGACGGAGGGTTATTCTACCCAAGGAGGAGAATTGGCTCTCGGCCGTAATGTTCAAGTAGCATACATGCCCTGGAAAGGATATAACTATGAGGATGCTATCGTTTTGAATGAGCGAATGGTTAGAGAGGACTTCTTCACATCTGTTCACGTGGACGAATATATCCTTGAAGTGAGAGAGACTAAAAGAGGTCTTGAAGAGTTAACTTCGGATATTCCGAATGTCAGTGAAGACGCTACAAGAGACTTGGACGAAAACGGTATCGTGCGCATCGGGGCACATATCGAACCCGGAGATATCCTTATTGGAAAAATTACACCTAAAGGGGAGTCAGATCCAACCCCTGAAGAAAAACTGCTACGAGCAATTTTCGGTGATAAAGCCGGTGACGTTAAGGATGCATCATTGAAAGCCACTCCCTCTCTGCGCGGAGTTGTAATTGACACCAAATTGTTTTCTAAGGCGGCAAAGAAAAAGAGTCGGACATCGACCAAAGAAGCTGTAAGCAAACTTGACGAAACATACGCGAAAAGGCAGCAACAACTTCATGAGCGTCTGATCGACAAGCTAACAGAACTGACCAAAGGCAAAACCTGCTGTGGCGTAAAGGACTACTTGAATGTTGAGTTGATTAAGGCCGGCAGCAAATTCGCCAAAAAAGATCTTGAAGCTCTTGATTTCAATGTGATCCAATTAAGTGATTGGACAAATGATGCACATACGAACGAGTTGATTAAGGCTGTTGCGGTGAATTATCTGAAGCACTCCAAGGAGATTGAAGCTGAACTACGGCGTCGCAAATTAGATGAGACCATCGGGGACGAACTGCCTGCCGGTATTGTTCAAATGGCCAAAGTCTATATAGCCAAGAAACGGAAGATCCAAGTTGGCGACAAGATGGCCGGACGTCATGGAAATAAAGGTATTGTGTCCAAAATCGTGCGTCAAGAGGATATGCCGTTCCTCGCAGACGGTACTCCGGTAGACATATGCCTAAACCCTCTTGGTGTACCCTCCCGTATGAACCTGGGACAGATATTCGAAGCGGTACTTGCCTGGGCGGGACGCAAGATGAATGTCAAATTTGCTACACCTATCTTCGATGGAGCTTCCCTCAATGATATGAATGAGTGGACAGACAAAGCAGGGCTACCTCGTGATGGAAAGACATATCTATACGATGGTGGTACCGGCGAACGTTTCGACCAACCTGCAACCGTTGGTGTAACTTATTTCTTGAAGCTTGGACACATGGTTGATGACAAGATGCATGCTCGATCCATCGGGCCATATTCACTCATCACCCAGCAACCTCTCGGCGGTAAAGCCCAATTCGGAGGACAACGATTTGGAGAGATGGAGGTTTGGGCTCTTGAAGCATTTGGAGCTTCGCATATCTTGCAAGAAATTCTTACTGTGAAATCTGACGATGTTGTTGGACGTTCAAAGGCATACGAAGCGATAGTCAAAGGAGATCCGATGCCTACACCGGGTATTCCGGAGTCGCTTAACGTGCTATTGCATGAATTGAAAGGCCTTGGTTTAAGTTTTTCTTTGGAC","5.60","-19.29","142343","MTPTTNNKRINFASIKNPLFYPDFLEVQLKSFHDFLQLDTPPERRKKEGLYKVFAENFPITDTRNNFVLEFLDYYIDPPKYSIEECLSRGLTYSVPLKAKLKLYCTDPDHEDFATVIQDVFLGPIPYMTSSGTFVINGAERVIVSQLHRSPGVFFGQSLHTNGTKLYSARIIPFKGSWIEFATDINNVMYAYIDRKKKLPVTTLLRAIGFEADKDILDIFNLAEEVKVTKANLKKCIGRKLAARVINTYIDDLSDEDTGEVVSMERITVVVDREVELTEDNIEAILNSNTQTILLHRNDSNTSDYSIIFNTLQKDPCNSEKEALYYVYRQLRNAEPADDASAREVITNLFFSDKRYDLGDVGRYRINKKLNLNIDPDIKVLTNEDIIEIIKYLIELVNSKASVDDIDHLSNRRVRTVGEQLYNQFGIGLARMARTVRDRMNVRDNEVFTPIDLVNAKTISSVVNSFFGTNALSQFMDQTNPLAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVYAKISDLGFITTPYREVKNGKVDFSDNGLKYYTAEEEEEKTVAQGNAPLDENGRFVRERVKARYESDFPLVTPDEVDLMDVSPTQIASIAAALIPFLEHDDANRALMGSNMMRQAVPLLRPESPIVGTGIEGKLVKDSRTQIVAERGGEVVFVDASCIKIRYDRTADEEFVSFDDAIVTYYLPKYRKTNQSTTIDLHPICSKGDRVEAGQILTEGYSTQGGELALGRNVQVAYMPWKGYNYEDAIVLNERMVREDFFTSVHVDEYILEVRETKRGLEELTSDIPNVSEDATRDLDENGIVRIGAHIEPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKATPSLRGVVIDTKLFSKAAKKKSRTSTKEAVSKLDETYAKRQQQLHERLIDKLTELTKGKTCCGVKDYLNVELIKAGSKFAKKDLEALDFNVIQLSDWTNDAHTNELIKAVAVNYLKHSKEIEAELRRRKLDETIGDELPAGIVQMAKVYIAKKRKIQVGDKMAGRHGNKGIVSKIVRQEDMPFLADGTPVDICLNPLGVPSRMNLGQIFEAVLAWAGRKMNVKFATPIFDGASLNDMNEWTDKAGLPRDGKTYLYDGGTGERFDQPATVGVTYFLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAFGASHILQEILTVKSDDVVGRSKAYEAIVKGDPMPTPGIPESLNVLLHELKGLGLSFSLD","425189 428995","Other RNA polymerase subunits are PG1667 (alpha) and PG0361 (beta').TIGR ID: PG0394","DNA-directed RNA polymerase subunit beta","Cytoplasm","This sequence is similar to CT315 and BT2734.Numerous significant hits in gapped BLAST to DNA-directed RNA polymerase, beta chain; e.g. residues 12-1269 are 46% similar to AF171070 of Bartonella henselae, residues 1-1269 are 77% similar to Y16470 of Porphyromonas cangingivalis, residues 12-1269 are 46% similar to AF165994 of Bartonella quintana.","
InterPro
IPR007120
Domain
RNA polymerase Rpb2, domain 6
PF00562\"[679-1193]TRNA_pol_Rpb2_6
InterPro
IPR007121
Family
RNA polymerase, beta subunit
PS01166\"[1046-1058]TRNA_POL_BETA
InterPro
IPR007641
Domain
RNA polymerase Rpb2, domain 7
PF04560\"[1195-1269]TRNA_pol_Rpb2_7
InterPro
IPR007642
Domain
RNA polymerase Rpb2, domain 2
PF04561\"[149-415]TRNA_pol_Rpb2_2
InterPro
IPR007644
Domain
RNA polymerase beta subunit
PF04563\"[23-470]TRNA_pol_Rpb2_1
InterPro
IPR007645
Domain
RNA polymerase Rpb2, domain 3
PF04565\"[474-543]TRNA_pol_Rpb2_3
InterPro
IPR010243
Family
DNA-directed RNA polymerase, beta subunit
TIGR02013\"[5-1268]TrpoB
noIPR
unintegrated
unintegrated
G3DSA:2.40.270.10\"[756-1179]TG3DSA:2.40.270.10
G3DSA:2.40.50.100\"[679-753]TG3DSA:2.40.50.100
G3DSA:3.90.1100.10\"[7-678]TG3DSA:3.90.1100.10
PTHR20856\"[450-900]T\"[1024-1268]TRNA_pol_I_sub2
PTHR20856:SF3\"[450-900]T\"[1024-1268]TPTHR20856:SF3
SSF64484\"[1-1269]TSSF64484


","BeTs to 17 clades of COG0085COG name: DNA-dependent RNA polymerase beta subunit (split gene in Mjan, Mthe, Aful)Functional Class: KThe phylogenetic pattern of COG0085 is AMTkYqvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB001572 (RNA polymerases beta subunit) with a combined E-value of 9.8e-196. IPB001572A 126-151 IPB001572B 404-413 IPB001572C 465-504 IPB001572D 509-533 IPB001572E 618-656 IPB001572F 764-787 IPB001572G 1046-1083 IPB001572H 1154-1203","Residues 623-696 are 66% similar to a (POLYMERASE RNA DNA-DIRECTED BETA) protein domain (PD001760) which is seen in RPOB_HAEIN.Residues 1022-1111 are 66% similar to a (POLYMERASE RNA DNA-DIRECTED TRANSCRIPTION TRANSFERASE) protein domain (PD000636) which is seen in RPOB_SYNY3.Residues 1130-1268 are 68% similar to a (POLYMERASE RNA DNA-DIRECTED TRANSCRIPTION TRANSFERASE) protein domain (PD000748) which is seen in RPOB_SPICI.Residues 342-552 are 62% similar to a (POLYMERASE RNA DNA-DIRECTED TRANSCRIPTION TRANSFERASE) protein domain (PD001006) which is seen in RPOB_RICPR.Residues 761-869 are 64% similar to a (POLYMERASE RNA DNA-DIRECTED TRANSCRIPTION TRANSFERASE) protein domain (PD001712) which is seen in RPOB_SYNY3.Residues 716-854 are 30% similar to a (PROTEIN ORF PUTATIVE KINASE) protein domain (PD000146) which is seen in RPOB_PLAFA.Residues 22-200 are 48% similar to a (POLYMERASE RNA DNA-DIRECTED TRANSCRIPTION TRANSFERASE) protein domain (PD001037) which is seen in O86094_LEGPN.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Fri Dec 19 09:49:45 2003","Tue Apr 17 15:07:18 MDT 2001","Fri Dec 19 09:49:45 2003","Tue Mar 26 16:09:12 2002","Tue Apr 17 14:55:57 MDT 2001","Tue Apr 17 14:55:57 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Apr 17 14:55:57 MDT 2001","-67% similar to PDB:1IW7 Crystal structure of the RNA polymerase holoenzyme from Thermus thermophilus at 2.6A resolution (E_value = 3.4E_159);-67% similar to PDB:1SMY Structural basis for transcription regulation by alarmone ppGpp (E_value = 3.4E_159);-67% similar to PDB:1ZYR Structure of Thermus thermophilus RNA polymerase holoenzyme in complex with the antibiotic streptolydigin (E_value = 3.4E_159);-67% similar to PDB:2A68 Crystal structure of the T. thermophilus RNA polymerase holoenzyme in complex with antibiotic rifabutin (E_value = 3.4E_159);-67% similar to PDB:2A69 Crystal structure of the T. Thermophilus RNA polymerase holoenzyme in complex with antibiotic rifapentin (E_value = 3.4E_159);","","","Residues 23 to 470 (E-value = 9.3e-30) place PG0360 in the RNA_pol_Rpb2_1 family which is described as RNA polymerase beta subunit (PF04563)Residues 149 to 415 (E-value = 1.1e-18) place PG0360 in the RNA_pol_Rpb2_2 family which is described as RNA polymerase Rpb2, domain 2 (PF04561)Residues 471 to 543 (E-value = 6.8e-43) place PG0360 in the RNA_pol_Rpb2_3 family which is described as RNA polymerase Rpb2, domain 3 (PF04565)Residues 679 to 1193 (E-value = 3.1e-160) place PG0360 in the RNA_pol_Rpb2_6 family which is described as RNA polymerase Rpb2, domain 6 (PF00562)Residues 1195 to 1269 (E-value = 3.9e-43) place PG0360 in the RNA_pol_Rpb2_7 family which is described as RNA polymerase Rpb2, domain 7 (PF04560)","Fri Dec 19 09:49:45 2003","34540221","","","","","","1","","","PG0394" "PG0361","429064","433362","4299","ATGGCTTTTAGAAAAGAAAATAAGATAAAGAACAACTTCTCGAAGATTCGTATCACCTTGGCTTCTCCTGAAGAGATTCTTGAGAACTCATTCGGAGAAGTATTGAAGCCGGAGACGATCAATTATCGTACCTACAAGCCGGAACGAGATGGCCTATTCTGTGAACGCATCTTCGGTCCGGTTAAGGATTTTGAATGTCACTGTGGCAAATACAAGCGTATTCGATACCGTGGTATCGTATGTGATCGCTGTGGAGTCGAGGTAACGGAAAAGAAAGTTCGCCGTGAGCGTATGGGGCACATCCATTTGGTCGTACCTGTTGCTCATATTTGGTATTTCCGTTCTCTTCCGAATAAGATCGGCTATTTATTAGGACTACCTACCAAGAAGTTGGATGCCATCATTTACTATGAACGCTACGTTGTTATTCAACCGGGTGTTGCCGAAGGGTTGAGTCAACTTGATCTATTGTCAGAGGAAGAATACCTCGACAAGCTTGATGAAATAGAGCGCACTCACAAGGGCAACCAAAATTTGGAGGATACCAATCCGGACAAATTTATTGCCAAAATTGGGGCAGAGGCTATTTATGATCTTCTATGTCGTGTGGATCTGGATTCTATTTCCTACGAATTGCGAGATCGTGCCAATACAGATGGTTCGCAGCAACGTAAAACAGAAGCACTTAAACGTCTTCAAGTCGTTGAAAGTTTCCGTGCATCCAAAGGTGTGAATCGTCCTGAGTGGATGGTTATGAAAGTGATTCCGGTTATCCCGCCGGATCTTCGTCCTTTAGTTCCTTTGGATGGTGGACGTTTCGCTACTTCCGATCTGAACGACTTGTACCGTCGCGTTATTATCCGTAACAACCGTCTCAAACGATTGATCGAGATCAAAGCTCCTGAAGTTATCTTACGCAATGAAAAGCGCATGCTACAGGAAGCGGTTGACTCCCTTTTCGACAACTCGCGGAAGTCAAGTGCGGTTAAGTCTGACAACAATCGTCCTTTGAAATCCCTTTCTGATAGTCTCAAAGGCAAACAAGGTCGTTTCCGTCAGAACTTGCTTGGTAAGCGTGTCGATTATTCTGCTCGTTCCGTTATCGTTGTTGGTCCGGAGCTTAAGATGCATGAGTGCGGACTTCCGAAAGACATGGCAGCCGAACTCTACAAACCCTTCATCATTCGCAAGTTGATTGAGCGTGGCATAGTGAAGACAGTCAAGAGTGCCAAGAAGATTGTAGACCGTAAAGAGCCTGTTATCTGGGATATTTTGGAGTACGTGATGAAAGGACATCCGGTCCTTCTGAACCGTGCACCGACTCTTCACCGACTAGGTATTCAAGCATTCCAACCCAAACTGATAGAAGGAAAAGCAATACAGTTGCATCCATTGAGTTGTACTGCATTTAATGCGGACTTCGATGGAGACCAAATGGCTGTACACCTTCCTCTGAGCAACGAAGCTATTCTTGAGGCGCAATTGCTTATGTTGGCTTCACATAACATTCTTAACCCTGCCAATGGAGCACCGATTACCGTTCCTTCACAGGATATGGTATTGGGACTCTATTATATTACCAAGCTACGTCCCAATACCAAAGGGCACGGCCTGATTTTCTATGGCCCTGAAGAAGCGACAATAGCCTATAACGAGGGTAAAGTCGATATTCATGCGCCGATTAAGGTCTATGTAGAGGATTACGAGAACGGAGAACTTGTTCGTCGTATGGTAGAGACATCCGTAGGGCGACTGATGGTAAACGAATATGTACCGAAGAAGGTAGGCTATGTCAATGAAGTACTCGGGAAAAAAGCTCTACGAGATATTATCGGTAGCGTAATCAAGATCTGCGGAGTAGCTACAACAGCCAAATTCTTGGATGATATCAAGAATTTGGGTTACTACATGGCTTTTAAGGGTGGCTTGTCTTTCAACTTGGCAGATGTGCTTATTCCTGATGAGAAAGACCAATTGATCCAAGAAGGTTACACTGCCGTCGAGCAGATTATGCAAGACTACAGTATGGGATTCATCACCTTTAATGAACGATACAATCAGATTATCGACACATGGACACATATCAATGGCCGTTTGTCAAATGTTCTGATCAAGCAACTCAGTTCAGACAATGACGGATTCAACTCTGTCTTCATGATGATGGATTCCGGAGCACGTGGTTCCAAGGAACAGATTCGTCAGTTGTCAGGTATGCGTGGATTGATGGCCAAGCCCCAAAAGAGTGGAGCCGAAGGAGGTCAGATTATTGAAAACCCCATTCTTTCAAACTTCAAGGAAGGACTCTCGGTACTTGAATACTTTATTTCTACTCATGGTGCACGTAAGGGGCTTGCCGATACCGCATTGAAAACGGCAGATGCTGGTTATCTCACCCGTCGTCTTGTGGACGTTTCTCACGATGTTATTATCACAGAGGAAGATTGTGGCACGCTACGCGGACTGCTTACTACCGAGCTAAAGCAAAACGAAGATGTCGTTGCTTCCTTGTACGAACGTATCCTTGGGCGCGTCTCTGTTCACGATATTATCCATCCTACTACAGGGGATATAATCGTTAGAGCTGGAGAAGAGATCAGAGAGCAGGCAGCACAGATTATCGAAGATTCACCTATCGAAGCTGTTGAAATCCGTTCTGTTCTCACCTGCGAATCCAAGAAAGGAGTATGTGCCAAGTGCTATGGTAGAAATCTTGCTACCAACCGCATGGTACAACGGGGTGAGGTCGTAGGCGTTATTGCAGCTCAGTCCATTGGAGAGCCGGGTACACAGCTTACTCTCCGAACATTCCACGTCGGAGGTATCGCATCCAATGTGGCAACGGAGAATAGCTTGCTCTCCAAATATGATGGTATCTTGGAATTCGAGGAACTACGTGCTGTGGATGTAACAGACGAATCGCATCAGGTCGTAGTGAGTCGGATGACTGAATTGCGTATTGCCGATCCGAATACCGGTATCATTTTGGCCAATCACAATATCCCCTACGGTGCAAAATTGTTCTTCCGCCAAGGTGATGCAGTCAAGAAAGGTGACAAAATCATCGAATGGGATCCGTTCAATGCGGTCATCGTATCGGAAGTAGCAGGAACACTCTCTTTCGAAGGTGTAGTGGAGAATGTAACTTTCAAGATGGAAAGCGACGAGACGACCGGTCTGAAAGAAAAGATTATCATCGAATCCAAGGATAAGACGATGGCTCCCTATGCTCGAATAATAGACGAGAATGGAGAGATGCTCAAGAACTATAGTCTCCCGATGGGTGCCCACGTTGTGAAAGACGATGGCGACACAGTCAAAGTTGGCGAGATTTTGGTGAAGATTCCTCGATCAGTGGGAAAAGCCGGTGACATTACCGGTGGTTTGCCTCGTGTCACCGAGCTATTCGAAGCACGAAATCCGTCGAATCCCGCGATCGTTTCCGAAATCGATGGGGAAATCGGCTTTGGCAAGTTGAAACGAGGAAACCGTGAGATCACTGTTACCTCCAAGCTGGGTGAAGAGAAAAAATATCTAATCCCCTTGTCCAAGCAGCTTCTTGTCCAAGAAAACGACTTCGTTCGTGCAGGAACACCGCTTTCTGACGGAGCTATTACTCCGGCTGATATTCTGGCAATCAAAGGTCCCACGGCAGTACAGGAGTACATCGTCAATGAAGTACAAGACGTGTATAGGCTTCAGGGTGTGAAGATCAATGATAAGCACTTCGAAGTTATTGTTCGCCAGATGATGCGCAAGGTTGAAATTGTCGATCCGGGTGACACCCTCTTCCTCGAACAGCAGGTAGTCGATAAGTTCGAAGTAATGGAAGAGAACGATCGCATCTGGGGTAAGAAGGTAGTTATTGATGCCGGAGATAGCCAAGTGCTGAAAGCCGGACAGATTGTTACGGCACGCAAGCTCCGTGATGAGAACAGTATGCTCAAGCGTAAGGATCTCAAGATCGTGAAAGTGCGCGATGCCAAGTCAGCTACTGCCAGCCAGATACTCCAAGGTATTACCCGTGCGGCACTGCAGACCAAGAGCTTCATGTCCGCGGCCTCTTTCCAAGAGACAACCAAGGTGCTGAATGAAGCAGCTATCTGTGGTAAGACTGACTACCTGGAAGGACTGAAGGAAAACGTTATCTGCGGTCACCTCATTCCGGCCGGTACTGGTTTGCGCGATTACGAGAAGCTCGTCGTTATGCATCGTGACGATTACGAAAAGGCGACAGCCGAGCGTAAGAGTTTCCTTTCCGTGCCCACAGCCGAACCGGCAATGGAAGAAGCACCATCGGAA","7.20","2.51","160265","MAFRKENKIKNNFSKIRITLASPEEILENSFGEVLKPETINYRTYKPERDGLFCERIFGPVKDFECHCGKYKRIRYRGIVCDRCGVEVTEKKVRRERMGHIHLVVPVAHIWYFRSLPNKIGYLLGLPTKKLDAIIYYERYVVIQPGVAEGLSQLDLLSEEEYLDKLDEIERTHKGNQNLEDTNPDKFIAKIGAEAIYDLLCRVDLDSISYELRDRANTDGSQQRKTEALKRLQVVESFRASKGVNRPEWMVMKVIPVIPPDLRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIKAPEVILRNEKRMLQEAVDSLFDNSRKSSAVKSDNNRPLKSLSDSLKGKQGRFRQNLLGKRVDYSARSVIVVGPELKMHECGLPKDMAAELYKPFIIRKLIERGIVKTVKSAKKIVDRKEPVIWDILEYVMKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLSCTAFNADFDGDQMAVHLPLSNEAILEAQLLMLASHNILNPANGAPITVPSQDMVLGLYYITKLRPNTKGHGLIFYGPEEATIAYNEGKVDIHAPIKVYVEDYENGELVRRMVETSVGRLMVNEYVPKKVGYVNEVLGKKALRDIIGSVIKICGVATTAKFLDDIKNLGYYMAFKGGLSFNLADVLIPDEKDQLIQEGYTAVEQIMQDYSMGFITFNERYNQIIDTWTHINGRLSNVLIKQLSSDNDGFNSVFMMMDSGARGSKEQIRQLSGMRGLMAKPQKSGAEGGQIIENPILSNFKEGLSVLEYFISTHGARKGLADTALKTADAGYLTRRLVDVSHDVIITEEDCGTLRGLLTTELKQNEDVVASLYERILGRVSVHDIIHPTTGDIIVRAGEEIREQAAQIIEDSPIEAVEIRSVLTCESKKGVCAKCYGRNLATNRMVQRGEVVGVIAAQSIGEPGTQLTLRTFHVGGIASNVATENSLLSKYDGILEFEELRAVDVTDESHQVVVSRMTELRIADPNTGIILANHNIPYGAKLFFRQGDAVKKGDKIIEWDPFNAVIVSEVAGTLSFEGVVENVTFKMESDETTGLKEKIIIESKDKTMAPYARIIDENGEMLKNYSLPMGAHVVKDDGDTVKVGEILVKIPRSVGKAGDITGGLPRVTELFEARNPSNPAIVSEIDGEIGFGKLKRGNREITVTSKLGEEKKYLIPLSKQLLVQENDFVRAGTPLSDGAITPADILAIKGPTAVQEYIVNEVQDVYRLQGVKINDKHFEVIVRQMMRKVEIVDPGDTLFLEQQVVDKFEVMEENDRIWGKKVVIDAGDSQVLKAGQIVTARKLRDENSMLKRKDLKIVKVRDAKSATASQILQGITRAALQTKSFMSAASFQETTKVLNEAAICGKTDYLEGLKENVICGHLIPAGTGLRDYEKLVVMHRDDYEKATAERKSFLSVPTAEPAMEEAPSE","429064 433362","Other RNA polymerase subunits are PG0360 (beta) and PG1667 (alpha).TIGR ID: PG0395","DNA-directed RNA polymerase subunit beta'","Cytoplasm","This sequence is similar to CT314 and BT2733.Numerous significant hits in gapped BLAST to DNA-directed RNA polymerase beta prime subunit; e.g. residues 1-1426 are 49% similar to AF170176 of Salmonella typhimurium, residues 1-1238 are 77% similar to Y16470 of Porphyromonas cangingivalis, residues 12-1408 are 47% similar to AE001144 of Borrelia burgdorferi.","
InterPro
IPR000722
Domain
RNA polymerase, alpha subunit
G3DSA:2.40.40.30\"[359-501]TRNA_pol_A
PF00623\"[357-499]TRNA_pol_Rpb1_2
InterPro
IPR006592
Domain
RNA polymerase, N-terminal
SM00663\"[248-527]TRPOLA_N
InterPro
IPR007066
Domain
RNA polymerase Rpb1, domain 3
PF04983\"[502-650]TRNA_pol_Rpb1_3
InterPro
IPR007080
Domain
RNA polymerase Rpb1, domain 1
G3DSA:3.90.1120.10\"[9-358]TRNA_pol_Rpb1_1
PF04997\"[10-355]TRNA_pol_Rpb1_1
InterPro
IPR007081
Domain
RNA polymerase Rpb1, domain 5
PF04998\"[767-1352]TRNA_pol_Rpb1_5
InterPro
IPR007083
Domain
RNA polymerase Rpb1, domain 4
PF05000\"[679-765]TRNA_pol_Rpb1_4
InterPro
IPR012754
Family
DNA-directed RNA polymerase, subunit beta-prime
TIGR02386\"[15-1398]TrpoC_TIGR
noIPR
unintegrated
unintegrated
PTHR19376\"[10-1283]T\"[1310-1430]TPTHR19376
PTHR19376:SF4\"[10-1283]T\"[1310-1430]TPTHR19376:SF4
SSF64484\"[1-1396]TSSF64484


","BeTs to 17 clades of COG0086COG name: DNA-dependent RNA polymerase beta' subunit (split gene in Mjan, Mthe, Aful, and Synechocystis)Functional Class: KThe phylogenetic pattern of COG0086 is AMTKYqVCebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** PF00623 (RNA polymerase alpha subunit) with a combined E-value of 5.8e-98. PF00623A 84-112 PF00623B 247-264 PF00623C 344-382 PF00623D 434-452 PF00623E 470-479 PF00623F 488-527","Residues 1335-1392 are 77% similar to a (RNA POLYMERASE DNA-DIRECTED SUBUNIT) protein domain (PD000751) which is seen in RPOC_RICPR.Residues 1179-1281 are 62% similar to a (RNA POLYMERASE DNA-DIRECTED TRANSCRIPTION) protein domain (PD003181) which is seen in ARGE_LEPBI.Residues 805-906 are 43% similar to a (RNA POLYMERASE DNA-DIRECTED TRANSCRIPTION) protein domain (PD002641) which is seen in Q9Z9M1_BBBBB.Residues 481-561 are 59% similar to a (RNA POLYMERASE DNA-DIRECTED SUBUNIT) protein domain (PD001471) which is seen in RPOC_SYNY3.Residues 339-422 are 65% similar to a (RNA POLYMERASE DNA-DIRECTED SUBUNIT) protein domain (PD000691) which is seen in RPOC_ANASP.Residues 16-259 are 55% similar to a (RNA POLYMERASE DNA-DIRECTED TRANSCRIPTION) protein domain (PD002077) which is seen in P95688_STAAU.Residues 428-480 are 84% similar to a (RNA POLYMERASE DNA-DIRECTED SUBUNIT TRANSCRIPTION) protein domain (PD000656) which is seen in Q9Z999_BBBBB.Residues 599-728 are 41% similar to a (RNA POLYMERASE DNA-DIRECTED SUBUNIT TRANSCRIPTION) protein domain (PD000956) which is seen in Q9ZK23_BBBBB.Residues 912-988 are 51% similar to a (RNA POLYMERASE DNA-DIRECTED SUBUNIT) protein domain (PD001579) which is seen in RPOC_ECOLI.Residues 243-338 are 36% similar to a (DNA-DIRECTED RNA POLYMERASE BETA') protein domain (PD123592) which is seen in RPOC_CHLVU.Residues 260-338 are 75% similar to a (RNA POLYMERASE DNA-DIRECTED SUBUNIT) protein domain (PD186054) which is seen in RPOC_ECOLI.Residues 1000-1167 are 37% similar to a (RNA POLYMERASE DNA-DIRECTED TRANSCRIPTION) protein domain (PD005798) which is seen in RPOC_RICPR.Residues 194-323 are 28% similar to a (RNA POLYMERASE SUBUNIT BETA') protein domain (PD114988) which is seen in O21238_RECAM.Residues 731-804 are 78% similar to a (RNA POLYMERASE DNA-DIRECTED SUBUNIT) protein domain (PD001122) which is seen in RPOC_PSEPU.Residues 268-398 are 29% similar to a (PROTEIN ORF PUTATIVE KINASE) protein domain (PD000146) which is seen in RPOC_PLAFA.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Tue Mar 26 16:34:19 2002","Fri Dec 19 09:48:24 2003","Fri Dec 19 09:48:24 2003","Fri Dec 19 09:48:24 2003","Tue Apr 17 14:43:11 MDT 2001","Fri Dec 19 09:48:24 2003","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Apr 17 14:43:11 MDT 2001","-63% similar to PDB:2GHO Recombinant Thermus aquaticus RNA polymerase for Structural Studies (E_value = );-63% similar to PDB:1HQM CRYSTAL STRUCTURE OF THERMUS AQUATICUS CORE RNA POLYMERASE-INCLUDES COMPLETE STRUCTURE WITH SIDE-CHAINS (EXCEPT FOR DISORDERED REGIONS)-FURTHER REFINED FROM ORIGINAL DEPOSITION-CONTAINS ADDITIONAL SEQUENCE INFORMATION (E_value = );-63% similar to PDB:1I6V THERMUS AQUATICUS CORE RNA POLYMERASE-RIFAMPICIN COMPLEX (E_value = );-64% similar to PDB:1IW7 Crystal structure of the RNA polymerase holoenzyme from Thermus thermophilus at 2.6A resolution (E_value = );-64% similar to PDB:1SMY Structural basis for transcription regulation by alarmone ppGpp (E_value = );","","","Residues 10 to 355 (E-value = 7.9e-129) place PG0361 in the RNA_pol_Rpb1_1 family which is described as RNA polymerase Rpb1, domain 1 (PF04997)Residues 357 to 499 (E-value = 4e-79) place PG0361 in the RNA_pol_Rpb1_2 family which is described as RNA polymerase Rpb1, domain 2 (PF00623)Residues 502 to 650 (E-value = 2e-38) place PG0361 in the RNA_pol_Rpb1_3 family which is described as RNA polymerase Rpb1, domain 3 (PF04983)Residues 675 to 765 (E-value = 2.4e-25) place PG0361 in the RNA_pol_Rpb1_4 family which is described as RNA polymerase Rpb1, domain 4 (PF05000)Residues 767 to 1352 (E-value = 1.7e-99) place PG0361 in the RNA_pol_Rpb1_5 family which is described as RNA polymerase Rpb1, domain 5 (PF04998)","Fri Dec 19 09:48:24 2003","34540222","","","","","","1","","","PG0395" "PG0362","433653","434348","696","ATGTGGAAGACAGCTTCGGATAAAGGATTGGGACACTTGCTTAGAGATGTTTGGTCTCTGCTGAACGAAGAGGAACGAGAGCTATTAGACAAGGAGATACAACCTTTTCCTTGTAAGAAAGCCTCCACCGTCTTCTCTGAAGGAGACATCCCCAACAATCTTTTTTATCTGTACGAAGGAAAAATAAAGATCCTGAGGGAAGGCGTATATGGACGCTTCCACATTTCTCGCATCGTTAAGCCGGGGCAGTTCTTCGGTATGCGTCCTTATTTTGCCGAAGAAACTTGTTCGTCCACAGCCATTGCCGTTGAAAACTCCAAAGTCCTTGCCATACCGGTCGAAGCTATCGAAGCATTGCTGAAAGGAAACACCTCATTCTGTAGATACTTCCTCAAGGCCTTGGCCAAAGAGTTGGGCTATGCAGAAAGGCGAACCGTAACGCTCACGCAGAAACATGTTCGTGGCCGACTGGCCGAAACGCTACTGATACTGAAAGAGAATTTCGGATTTGAGAATGATGGAGCTACCCTAAGTATCTACCTTAGTCGAGAGGAACTGGCTACTCTTTCCAACATGACAGTAAGCAATGCCATACGTACCCTTTCTACATTCGTTTCCGAGCGAATGCTGGCACTTGATGGCAAGAGGATCAAGATTATCGACTGCGATCGTCTGCAAAAAACCGCACGTTCCGGT","9.20","5.54","26265","MWKTASDKGLGHLLRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPYFAEETCSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAKELGYAERRTVTLTQKHVRGRLAETLLILKENFGFENDGATLSIYLSREELATLSNMTVSNAIRTLSTFVSERMLALDGKRIKIIDCDRLQKTARSG","433653 434348","TIGR ID: PG0396","conserved hypothetical protein(possible transcriptional regulator)","Cytoplasm","Residues 17 to 230 share 25% identity with emb|CAB45551.1| (AL079353), a putative transcriptional regulator in Streptomyces coelicolor A3(2).Residues 29 to 230 share 28% identity with emb|CAA17998.1| (AL022121), a hypothetical protein Rv3676 in Mycobacterium tuberculosis.Residues 27 to 220 share 27% identity with gb|AAD27624.1|AF126490_1 (AF126490), an NNR-like protein [Rhodobacter sphaeroides f. sp.denitrificans.","
InterPro
IPR000595
Domain
Cyclic nucleotide-binding
PF00027\"[35-125]TcNMP_binding
SM00100\"[17-138]TcNMP
PS50042\"[17-137]TCNMP_BINDING_3
SSF51206\"[26-151]TcNMP_binding
InterPro
IPR012318
Domain
Helix-turn-helix motif, Crp-type
PS51063\"[151-223]THTH_CRP_2
InterPro
IPR014710
Domain
RmlC-like jelly roll fold
G3DSA:2.60.120.10\"[16-151]TRmlC-like_jellyroll
noIPR
unintegrated
unintegrated
SSF46785\"[152-222]TSSF46785


","BeTs to 10 clades of COG0664COG name: cAMP-binding domains - Catabolite gene activator and regulatory subunit of cAMP-dependent protein kinasesFunctional Class:  TThe phylogenetic pattern of COG0664 is a---YQvCEbRH-----Lin-Number of proteins in this genome belonging to this COG is 3","***** IPB001808 (Bacterial regulatory proteins, Crp family) with a combined E-value of 2.6e-11. IPB001808A 48-99 IPB001808B 179-210","Residues 26-148 are 28% similar to a (PROTEIN KINASE CHANNEL CAMP-BINDING REGULATORY) protein domain (PD000171) which is seen in O30748_RHOSH.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Sat Feb 24 18:59:37 MST 2001","Sat Feb 24 18:59:37 MST 2001","Sat Feb 24 18:59:37 MST 2001","Sat Feb 24 18:59:37 MST 2001","Sat Feb 24 18:59:37 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Sat Feb 24 18:59:37 MST 2001","-100% similar to PDB:2GAU Crystal structure of transcriptional regulator, Crp/Fnr family from Porphyromonas gingivalis (APC80792), Structural genomics, MCSG (E_value = 8.3E_130);","","","Residues 32 to 125 (E-value = 2.2e-15) place PG0362 in the cNMP_binding family which is described as Cyclic nucleotide-binding domain (PF00027)","Sat Feb 24 18:59:37 MST 2001","34540223","","","","","","1","","","PG0396" "PG0363","434692","434405","288","ATGGAAAAAAGCGAAATACAGAAAGTGGATCAGGTAATTCGGGCTTGGCTGGAGGATGAACCGCTCATGTATGAACGACTTCTCGAGGTGGAGGCTTTGGAAGCTCTGCCACAGGTGTTGGGGCCTCTCTATAAATTCCTCGGTCGTAGCCGGATTCATGACGGCGTACTGTACCTGACATTCAATTCGTCCGTTGTTCGCAGCCAGCTGAGCAACAACAAAGCAGAGTTGCTCCTCAGGCTGAATACGGCCGTGGATGCAGAACTGATTCGACAAATAGTTTTCTTA","5.00","-2.77","11081","MEKSEIQKVDQVIRAWLEDEPLMYERLLEVEALEALPQVLGPLYKFLGRSRIHDGVLYLTFNSSVVRSQLSNNKAELLLRLNTAVDAELIRQIVFL","434692 434405 [Shorter 476 276 99]","TIGR ID: PG0397","hypothetical protein","Cytoplasm","No hit found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Feb 15 15:49:32 MST 2001","","Thu Feb 15 15:49:32 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 15 15:49:32 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540224","","","","","","1","","","PG0397" "PG0364","434417","434734","318","TTGTCGAATCAGTTCTGCATCCACGGCCGTATTCAGCCTGAGGAGCAACTCTGCTTTGTTGTTGCTCAGCTGGCTGCGAACAACGGACGAATTGAATGTCAGGTACAGTACGCCGTCATGAATCCGGCTACGACCGAGGAATTTATAGAGAGGCCCCAACACCTGTGGCAGAGCTTCCAAAGCCTCCACCTCGAGAAGTCGTTCATACATGAGCGGTTCATCCTCCAGCCAAGCCCGAATTACCTGATCCACTTTCTGTATTTCGCTTTTTTCCATCCAAGGATACCTATTATTGGAATATCTGTCCGTTTTCTATTT","7.10","0.29","12531","LSNQFCIHGRIQPEEQLCFVVAQLAANNGRIECQVQYAVMNPATTEEFIERPQHLWQSFQSLHLEKSFIHERFILQPSPNYLIHFLYFAFFHPRIPIIGISVRFLF","434417 434734 [Bad Olap 475 276 0]","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Sat Feb 24 19:01:53 MST 2001","","Sat Feb 24 19:01:53 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Sat Feb 24 19:01:53 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Sat Feb 24 19:01:53 MST 2001","","","","","","","1","","","" "PG0365","435800","434709","1092","ATGATCATAGAAGAACTCCATATCGTCAATTTTAAGAGTATCGCAGCTGCCGATTGCCGGTTTTCGCCCAAAGTGAACTGTCTGGTGGGGAACAATGGAATGGGCAAGACTAATCTGCTGGATGCGCTGCATTTCCTCTCTTTCTGTCGCAGTCATCTTTCCGTACCGGACAATATGGTTGTCAGACATGGAGAAGAAATGGCCCTGTTGCAGGGGCTTTATCGGGATGAAAGCGGCGATGGGATAGAGCTGCTCCTTTCTATTCGTCCGGGGAAGCACAAGGTACTGCGTCGGAATAAGAAAGAATATGAACGACTGAGCGATCATATCGGTCGCTTCCCGCTGGTAATAGTTTCTCCGCAGGACTATCAGCTCATACTGGGCGGTAGCGATGAGCGCAGACGATTCATGGATCAGCAGCTTTGCCAGCAGGATCCTCGGTATCTGTCGGCTCTCATTCAGTACAATCGGCATTTGCAACAGCGCAATACAATGCTCAAGCAGGACCGTCACGATGATGCTCTGATGGACGTTTTGGAGTTACAGATGGGATCCTATGCAGCAGAGATCTGCAACAAGCGTAGCCGTTTTATCGAGGATTTTCTTCCTGTTTTCAATGATCTTTATTCCGACATTAGCGGATCTGCAGAGAAAGTCAGCCTATCCTATCGCTCGCACTTGGCGGACGGAATACCTCTTGAAGAATTGCTTCGCAGGAGCCGCCCCAAGGACTATTTGCTGGGATTTTCTTCTTGCGGTGTACACAAGGACGAATTGGAAATGCTTCTTGGTGGAGTTCTTATTCGGAAAATAGGTTCGGAGGGACAAAACAAGACTTTCCTGATCAGCATGAAGTTGGCACAGTTCCGCCATCAGCAACTGCACGGTGATGAGACGCCCATTTTGCTGCTCGATGATATATTCGACAAACTGGATGCCACCCGTGTGGAGCGGATTATCCGCCTTGTCGGCGGTAACGGTTTCGGGCAGATCTTCATCACAGATACGAATCGGAAAAACTTGGACGAGATTATCGCTTCTTGGAGTGAGGATTACCGCCTTTTCAAAATAGAAAACGGACAGATATTCCAA","6.80","-1.37","41798","MIIEELHIVNFKSIAAADCRFSPKVNCLVGNNGMGKTNLLDALHFLSFCRSHLSVPDNMVVRHGEEMALLQGLYRDESGDGIELLLSIRPGKHKVLRRNKKEYERLSDHIGRFPLVIVSPQDYQLILGGSDERRRFMDQQLCQQDPRYLSALIQYNRHLQQRNTMLKQDRHDDALMDVLELQMGSYAAEICNKRSRFIEDFLPVFNDLYSDISGSAEKVSLSYRSHLADGIPLEELLRRSRPKDYLLGFSSCGVHKDELEMLLGGVLIRKIGSEGQNKTFLISMKLAQFRHQQLHGDETPILLLDDIFDKLDATRVERIIRLVGGNGFGQIFITDTNRKNLDEIIASWSEDYRLFKIENGQIFQ","435800 434709","TIGR ID: PG0398","RecF protein","Cytoplasm","This sequence is similar to CT074 and BT4255.Numerous significant hits in gapped BLAST to DNA replication and repair protein; e.g. residues 1-362 are 33% similar to AE006637 of Streptococcus pyogenes, residues 1-362 are 30% similar to AP001507 of Bacillus halodurans, residues 1-364 are 29% similar to AP003358 of Staphylococcus aureus.","
InterPro
IPR001238
Family
RecF protein
TIGR00611\"[1-362]Trecf
PS00617\"[118-138]TRECF_1
PS00618\"[301-319]NRECF_2
InterPro
IPR003395
Domain
SMC protein, N-terminal
PF02463\"[2-363]TSMC_N
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[1-51]TG3DSA:3.40.50.300
PTHR18937\"[21-46]TPTHR18937
SSF52540\"[1-334]TSSF52540


","BeTs to 7 clades of COG1195COG name: ATPases involved in DNA repairFunctional Class: LThe phylogenetic pattern of COG1195 is -------cebrh-----li-xNumber of proteins in this genome belonging to this COG is 1","***** IPB001238 (RecF protein) with a combined E-value of 2.9e-39. IPB001238A 11-49 IPB001238B 120-168 IPB001238C 246-271 IPB001238D 300-312","Residues 105-362 are 27% similar to a (RECF PROTEIN DNA DAMAGE REPLICATION DNA-BINDING SOS) protein domain (PD003952) which is seen in RECF_STAAU.Residues 6-99 are 34% similar to a (PROTEIN ATP-BINDING DNA REPAIR CHROMOSOME COILED COIL) protein domain (PD000596) which is seen in RECF_STRCO.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Mar 22 10:42:05 MST 2000","Mon Jan 5 11:30:43 2004","Wed Jun 6 13:03:20 MDT 2001","Wed Jun 6 13:03:20 MDT 2001","Wed Jun 6 13:03:20 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Jun 6 13:03:20 MDT 2001","-44% similar to PDB:2O5V Recombination mediator RecF (E_value = 7.8E_12);","","","Residues 1 to 141 (E-value = 1.4e-06) place PG0365 in the SMC_N family which is described as RecF/RecN/SMC N terminal domain (PF02463)","Wed Jun 6 13:03:20 MDT 2001","34540225","","","","","","1","","","PG0398" "PG0366","436327","435800","528","ATGGGTGCTGCCGTACGAAAGCAAGTCCGAGGCGCAATCAGTTTTTTTCTGGTTGCATTGGGGATATGCTTGGCTGTGTCTTGCACATACCGTAAGGACGAGCGAATACTGTATCGTCAGGTGCCTCATGGAAGGTGGCAGAAGCGCGATGTGCTCGACTACGAAATCCTCATACCGGACTATACTCGCTCATATTCTTTGGAGCTGCTGATCCGCCATGACAATCGGTATGAATATCGCGATTTGGCATTGGCATACGAGGTTTCAGTGGGAGAGCGTCTGATCTTTGCGGACTCTGTGGATCTGACTTTGGCCGACAAGCCGCAACAGTGGAACGGAAAAGGGGTTGCCAAGCAGCAAAACCGGTTTCGCCTGCCGATCTCCGCACGTTTTCCCTATTCGGGTCTTTATAAGATAGAGTTAAAGCACAATATGAGGGTACCGACTCTTTCAGGTATCACGGAAGTAGGTATTCGTTTGACAGAAGGGCGAGACAGTCCTCCACCCTCTATCTTACCCCAACGAGAA","10.30","7.62","20295","MGAAVRKQVRGAISFFLVALGICLAVSCTYRKDERILYRQVPHGRWQKRDVLDYEILIPDYTRSYSLELLIRHDNRYEYRDLALAYEVSVGERLIFADSVDLTLADKPQQWNGKGVAKQQNRFRLPISARFPYSGLYKIELKHNMRVPTLSGITEVGIRLTEGRDSPPPSILPQRE","436327 435800 [Delay by 360 481 350 1]","TIGR ID: PG0399","hypothetical protein","Cytoplasm, Periplasm","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
PS51257\"[1-28]TPROKAR_LIPOPROTEIN


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Feb 15 15:51:44 MST 2001","","Thu Feb 15 15:51:44 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 15 15:51:44 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540226","","","","","","1","","","PG0399" "PG0367","437618","436338","1281","GTGGAGGTACAGTTCAAGAATACGCGCAAAGGATACTACCTCAACAGCGAGAGGATAGAGCTGCACAAAGGGGATGTAGTAGCCGTAGAGGCCAATCCGGGTCACGACATCGGGACAGTGACGCTGACCGGCAAGTTGGTAAAACTCCAGATGCGTAAGCATCGATACAATACGAACAACGGCGAGCCTTTCAAAATATACCGCATAGCCAAACAGGGCGATCTGGATAAGTACTGCGAAGCAAAGGCGCGAGAGTACGATACGATGATTCAGTCCCGTCAGATTTCTGCCGAGCTGAATCTGGACATGAAGATCGGAGATGTGGAGTATCAGGGCGATGGCAATAAGGCCATTTTCTACTATATCGCCGATGAGCGCGTGGACTTTCGCCAACTGATCCGAGTATTGGCAGAGACCTTCCATATCCGCGTGGAGATGAAGCAGATCGGTGCAAGGCAGGAGGCCGGCCGTATAGGCGGTATCGGTCCTTGTGGCCGCCAGCTGTGCTGCTCGGCCTGGAAGATGAATTTCGTATCGGTGAATACGAGTGCAGCCCGCTATCAAGACTTAGCTCTCAATCCTCAGAAGCTCACGGGCCTCTGCGCCAAGCTCAAATGCTGCCTCAATTATGAGGTGGATGCTTATGTGGAAGCTCGTAAGAAGATGCCGAGTCCGGAGATCGTCTTGGAGACGAAAGAAAGTGCGTACCACTATTTCAAGGCGGATGTATTCCGTCGGGAGGTTTCGTATTCTACCGTTCCCAATGCTCCGGTCAATCTTACGACTATATCGGCTCGTCGTGCTTTCGAGGTGATCAGCCAGAACAAGCAGGGGTTCAAGCCGGTATCGCTGGAGTATGACGACAAGAAGCAGTCGTCCGGACACGAATTGTCCGACATTCTTACGGATAACAGCCTGACACGGTTCGACGATGCCTTGTCTCGTCGCAGAAGACGAAACGGCAATGGCAATAGGGACTTCTCCGACAGGGAAAAAGCTGGCGAACCGCATCGTACACCTGATTCTATACAGCCTACGCCTCGCGTTCGCAGCAGTAGCAGGATGCCATCGCGAGAGAAATCTCCCCGACCGGAGGGAGGTGATCGTCGTGAGAATATGCGAGAGCGTAGTCGAGGCGATGCTCGTTTTGCACGTCCCTATACGAATGAGGGAGGCTCCGAACGTATGGAAGGAGCCAGACGTGTGGTGGGCAGTGGCCGCAGACCACCGCGTCAAAGCACTCCACGTCAGGAAGACCGACAAGGAGAGAGAAAGGAGGAA","10.30","19.40","48859","VEVQFKNTRKGYYLNSERIELHKGDVVAVEANPGHDIGTVTLTGKLVKLQMRKHRYNTNNGEPFKIYRIAKQGDLDKYCEAKAREYDTMIQSRQISAELNLDMKIGDVEYQGDGNKAIFYYIADERVDFRQLIRVLAETFHIRVEMKQIGARQEAGRIGGIGPCGRQLCCSAWKMNFVSVNTSAARYQDLALNPQKLTGLCAKLKCCLNYEVDAYVEARKKMPSPEIVLETKESAYHYFKADVFRREVSYSTVPNAPVNLTTISARRAFEVISQNKQGFKPVSLEYDDKKQSSGHELSDILTDNSLTRFDDALSRRRRRNGNGNRDFSDREKAGEPHRTPDSIQPTPRVRSSSRMPSREKSPRPEGGDRRENMRERSRGDARFARPYTNEGGSERMEGARRVVGSGRRPPRQSTPRQEDRQGERKEE","437747 436338","TIGR ID: PG0400","conserved hypothetical protein (possible signal peptidase II/TPL protein)","Cytoplasm, Extracellular","Residues 1-231 share 40% identity with dbj|BAB03764.1| (AP001507), a signal peptidase-like protein in Bacillus halodurans.Residues 1-223 share 39% identity with emb|CAB11808.1| (Z99104), similar to signal peptidase II in Bacillus subtilis.Residues 66-211 share 33% identity with gb|AAA20395.1| (U11881), a signal peptidase II-like protein in Treponema pallidum.This same region shows a high degree of identity with conserved hypothetical proteins in a number of additional bacterial genera.This sequence is similar to BT3819.","
InterPro
IPR007557
Domain
PSP1 C-terminal conserved region
PF04468\"[62-149]TPSP1
noIPR
unintegrated
unintegrated
PTHR21600\"[80-347]TRIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE B
PTHR21600:SF3\"[80-347]TRIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE B-RELATED


","BeTs to 5 clades of COG1774COG name: Uncharacterized ACR, PSP1 homologsFunctional Class: SThe phylogenetic pattern of COG1774 is ----Yqv--b-------l---Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 65-211 are 47% similar to a (PROTEIN XPAC-ABRB INTERGENIC REGION) protein domain (PD013732) which is seen in YAAT_BACSU.","","Thu Jun 14 10:47:50 MDT 2001","","Thu Jun 14 10:47:50 MDT 2001","Thu Jun 14 10:47:50 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 10:47:50 MDT 2001","Thu Jun 14 10:47:50 MDT 2001","","","Fri Dec 26 13:59:53 2003","Fri Dec 26 13:59:53 2003","Thu Jun 14 10:47:50 MDT 2001","","Wed Jun 20 13:39:33 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Sat Feb 24 19:08:49 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 62 to 149 (E-value = 6.6e-25) place PG0367 in the PSP1 family which is described as PSP1 C-terminal conserved region (PF04468)","Wed Jun 20 13:39:33 MDT 2001","34540227","","","","","","1","","","PG0400" "PG0368","439396","437858","1539","ATGGGAATAGGAACACTTTTATTATTTACTTTTTTGGGGCTTGTAGCCGGTGCCACTGCCGTATGGCTGATCACGCGGACACTGCTCAAGCAAAGGACAGAGGGGATTCTCGCCGAGGCTCGCCGTGAAGCCGAGGTAATCAAGCAGAAGAAGCTCCTCGAAGTGAAAGAGAAATTTCTCCAACTGAAAGGCGACCTGGAAAAGCAGGTGGCACAGCGCAATAGCAAGCTCCAATCGGTGGAGAGCAAACTCAAAAGCCGCGAACAAACCCTCAACCAACGTCAGGAAGATATAACGAAGAAGGGGCAGGAAATGGATTTGATGCGTGAGAATCTGACTGCTCAACTCTCTGTGATTGAAAAGAAAAAGACGGAACTCGACGAGCTGAAAACTCGCGAACAGGCTCATCTGGAGTCTCTGAGCGGACTCTCCGCTGCCGAGGCTAAAGACAGACTGGTGGAAAGCCTCAAAGATGAAGCCAAAGGACAAGCCTCTGCATACGTCAATGAGATTATCGAAGAGGCCAAGATGACTGCCAACAAAGAGGCCAAGCGAATCGTCATCCAATCCATCCAGCGCGTGGCTACGGAAACGGCTATCGAAAACTCCGTGACCGTCTTCCATATCGAAAGCGACGAGATCAAGGGGCGCATCATCGGCCGAGAGGGTCGCAACATCCGTGCATTGGAGGCTGCTGCCGGTATAGAGATCATTGTAGACGATACGCCGGAAGCGATCGTCTTATCGGGATTCGATCCGGTGCGTCGTGAGATAGCGCGTCTGGCACTGCATCAGTTGGTACAGGATGGACGTATCCACCCGGCACGCATAGAAGAGGTGGTATCCAAAGTAAGAAAACAGGTGGAAGAAGAGATCATCGAGACGGGCAAACGGACGGTGATCGACCTTGGAATCCACGGTCTGCATCCGGAACTGATCCGTCTGATCGGTAAGATGAAGTATCGCTCTTCCTATGGGCAGAATCTCTTGCAGCATTCGCGTGAGACAGCTAACCTCTGTGCCATAATGGCCAGCGAATTGGGGCTGAATCCGAAAAAAGCCAAACGCGCCGGTCTGCTGCACGACATCGGCAAGGTGCCCGACGATGAGCCGGAATTGCCACACGCTCTCTTAGGCATGAAGCTCTGTGAGAAGTTCAAAGAGAAACCCGACATATGCAACGCCGTGGGAGCGCACCACGATGAGGTGGAAATGATGTCCCTCATAGCTCCTATCGTACAGGTGTGCGACGCCATTAGCGGCGCGCGTCCGGGAGCACGCCGTGAGATCGTGGAAGCCTATATCAAGCGTCTGAATGATCTGGAGCAACTCGCCATGTCCTATCCGGGCGTTATCAAGACCTATGCTATTCAGGCCGGCCGCGAACTCCGTGTGATCGTCGGTGCCGACAAGACGGACGATGCCTCGGTGGAAACGCTCTCGAACGAAATAGCCAAAAGAATCCAGGACGAGATGACCTACCCCGGACAAGTGAAGATCACAGTGATCCGCGAATCTCGCTCCGTCAGCTACGCCAAA","7.60","2.54","57225","MGIGTLLLFTFLGLVAGATAVWLITRTLLKQRTEGILAEARREAEVIKQKKLLEVKEKFLQLKGDLEKQVAQRNSKLQSVESKLKSREQTLNQRQEDITKKGQEMDLMRENLTAQLSVIEKKKTELDELKTREQAHLESLSGLSAAEAKDRLVESLKDEAKGQASAYVNEIIEEAKMTANKEAKRIVIQSIQRVATETAIENSVTVFHIESDEIKGRIIGREGRNIRALEAAAGIEIIVDDTPEAIVLSGFDPVRREIARLALHQLVQDGRIHPARIEEVVSKVRKQVEEEIIETGKRTVIDLGIHGLHPELIRLIGKMKYRSSYGQNLLQHSRETANLCAIMASELGLNPKKAKRAGLLHDIGKVPDDEPELPHALLGMKLCEKFKEKPDICNAVGAHHDEVEMMSLIAPIVQVCDAISGARPGARREIVEAYIKRLNDLEQLAMSYPGVIKTYAIQAGRELRVIVGADKTDDASVETLSNEIAKRIQDEMTYPGQVKITVIRESRSVSYAK","439396 437858","TIGR ID: PG0401","conserved hypothetical protein(possible CTP synthase)","Cytoplasm, Inner membrane","Residues 17 to 513 share 41% identity with gb|AAC65967.1| (AE001269), a conserved hypothetical protein in Treponema pallidum.Residues 34 to 513 share 44% identity with pir||F69884, a conserved hypothetical protein ymdA in Bacillus subtilis.Residues 36 to 513 share 44% identity with dbj|BAB06097.1| (AP001515), BH2378~unknown conserved protein in Bacillus halodurans.This same region shows a high degree of identity with hypothetical proteins in a number of additional bacterial genera.This sequence is similar to BT4417.","
InterPro
IPR003607
Domain
Metal-dependent phosphohydrolase, HD region
SM00471\"[325-431]THDc
InterPro
IPR004087
Domain
KH
SM00322\"[201-271]TKH
InterPro
IPR004088
Domain
KH, type 1
PF00013\"[204-263]TKH_1
PS50084\"[216-263]TKH_TYPE_1
InterPro
IPR006674
Domain
Metal-dependent phosphohydrolase, HD region, subdomain
PF01966\"[329-422]THD
InterPro
IPR006675
Domain
HDIG
TIGR00277\"[325-402]THDIG
noIPR
unintegrated
unintegrated
SSF54791\"[192-299]TSSF54791


","BeTs to 8 clades of COG1418COG name: Uncharacterized hydrolases of the HD superfamilyFunctional Class:� RThe phylogenetic pattern of COG1418 is Amtk-qv-eB--ujgpol---Number of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","Residues 186-326 are 33% similar to a (PROTEIN CONSERVED PUTATIVE) protein domain (PD190210) which is seen in O25455_HELPY.Residues 229-267 are 66% similar to a (PROTEIN CONSERVED C2C4.11C CHROMOSOME) protein domain (PD008413) which is seen in O31774_BACSU.Residues 442-513 are 52% similar to a (PROTEIN CONSERVED PUTATIVE YMDA) protein domain (PD016456) which is seen in O31774_BACSU.Residues 269-317 are 57% similar to a (PROTEIN CONSERVED YMDA) protein domain (PD017383) which is seen in O31774_BACSU.Residues 318-438 are 49% similar to a (PROTEIN CONSERVED MG130 TRANSMEMBRANE) protein domain (PD003868) which is seen in O83981_TREPA.Residues 34-184 are 29% similar to a (PROTEIN COILED COIL REPEAT FILAMENT HEPTAD PATTERN CHAIN) protein domain (PD000002) which is seen in O31774_BACSU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Sat Feb 24 19:15:39 MST 2001","Mon Jan 5 14:38:06 2004","Mon Jan 5 14:38:06 2004","","Sat Feb 24 19:15:39 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Sat Feb 24 19:15:39 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 329 to 422 (E-value = 1.9e-23) place PG0368 in the HD family which is described as HD domain (PF01966)","Sat Feb 24 19:15:39 MST 2001","34540228","","","","","","1","","","PG0401" "PG0369","439851","439546","306","ATGACAAAGGATCCGGAGTCGCTGAATATTACACTCAACATCCAGGGGAGCCGGCTGAGGCTCGCCATACCACGTAATGATGAGGCTCTCTATCGGCAGGCTGCCGACAGGCTTAACTTCCGGATCATGCGTTATCGCGAATCATATCCCAATATAGCCCAACTGCCTGTAGGCGGACATTTGCTTCTGGCTGCGGTGGATACGGCTTTTTATTTGGTACACGAGCGCAAACAGGCCGATCGTACTCCGATCAATGACCGCTTGCACAGGCTCAATACCGAATTGGAGGCTTTTCTAAGTCGCTAT","10.50","3.71","11891","MTKDPESLNITLNIQGSRLRLAIPRNDEALYRQAADRLNFRIMRYRESYPNIAQLPVGGHLLLAAVDTAFYLVHERKQADRTPINDRLHRLNTELEAFLSRY","439851 439546","TIGR ID: PG0403","hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
noIPR
unintegrated
unintegrated
SSF102829\"[9-101]TSSF102829


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Feb 15 15:53:57 MST 2001","","Thu Feb 15 15:53:57 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 15 15:53:57 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540229","","","","","","1","","","PG0403" "PG0370","440196","439861","336","TTGGCGCGGATAATTTACTTTTGTAAGGAAAAGGATTATTCTATGACCGGAGAAGAGGAACTCGATCTTTCGAAGCTGGAGTATAACGTCCGCAAGCTGATGGAGCTGGTGGAAAAGCAGCAAAACGAAATTTCGTCTCTTCGGGCCGAACTGGCTGCGAAAAATGAAAAGATCGTACAGCAGGATTTGGCCTTGGGCATAGCAGAAACCAAGAACAAGACGTTGCTGACATCGAGGGTGATCGTAGCCAATGAGGACGAAGCCCGTCAGTCCAAACAGCGTCTGGAAAGTTTGATAAGAGAAATAGACAGGTGCATCGCCCTGTTGCAAACGGAA","5.00","-3.09","12940","LARIIYFCKEKDYSMTGEEELDLSKLEYNVRKLMELVEKQQNEISSLRAELAAKNEKIVQQDLALGIAETKNKTLLTSRVIVANEDEARQSKQRLESLIREIDRCIALLQTE","440196 439861","TIGR ID: PG0404","hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Feb 15 15:54:51 MST 2001","","Thu Feb 15 15:54:51 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 15 15:54:51 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540230","","","","","","1","","","PG0404" "PG0372","441575","441045","531","TTGATAAATATAACTGATGACTTATTTCGACTACTCTACCTTGATGAAGAAGGTAAAGTACAGCACCACTGCCAACATATTTACCCCCTCTATATTCTTGTCCGTCGTAGTCGTCAAGCGAATAGGAAGGCCTGTCGATTGGAGCAACGGAAGCAAATTGTTCGCTTCTATCTTGAGCGAAAGCTCATCGCTCGACAAAGAAGTGATGGTGGCAATCAATTTATAGTCGGAGCCGGCATAGAGTTTTACCCCTTCGAAGATCGACAAGTCGAACGAACCGGCCACCTGTTTTTTGATGATTTCTACAAGCAATCTATTCCTCAGATCGGTAAATTGGAATTTCATTCACAATATTACACAATCTGCTTAAAGAAAACAAGAGAAGAGACCGCGCCAACATTTTTTATATGTTTCCTTGCCAAGAAAAGAGAGAACTCTACATTCGAAATCTCTTTGAAGACATCCTGTTCTGAATTTTTAGGAATCCGAAGGCCGTGTATTATTTTTCACTATATTTGCAATACAGAAAGC","9.10","8.11","21173","LINITDDLFRLLYLDEEGKVQHHCQHIYPLYILVRRSRQANRKACRLEQRKQIVRFYLERKLIARQRSDGGNQFIVGAGIEFYPFEDRQVERTGHLFFDDFYKQSIPQIGKLEFHSQYYTICLKKTREETAPTFFICFLAKKRENSTFEISLKTSCSEFLGIRRPCIIFHYICNTES","441575 441045","TIGR ID: PG0408","isoleucyl-tRNA synthetase","Cytoplasm","No hit found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Apr 26 15:56:32 MDT 2001","","Thu Feb 15 15:55:59 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 15 15:55:59 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Apr 26 15:55:23 MDT 2001","34540231","","","","","","1","","","PG0408" "PG0373","441589","442407","819","ATGAGAAAGAAGAATTTATTGCTTGGCGTTTTGGCTCTATTGTTCGCTCTGCCGGCTATTGCTCAAAACGACAACAACCTTCATGATGGAAAGATCCATTATGGAACAACTGTTTCGGTAGGTGTATTGAACGGCGTCAAAATAGAGGGGAGCGCGCGCTTCATGCCCGAACTGACAGCTCGTGCAGGCTTTGCCTTCATACCCTCCATTGCCATTATCAAGAACAAAGTGTTTGAGCCGGATGATCCCCAAGAGTTGGAGGCATATCAGTCGGTATTGGGCTATACACCCGGGATCAGGGGGAATCTGAAGGTATCCTCTTTTTCCGGTCATATGTTGGCTGATTACCATCCGTTCAAGAACGCTTTCCGCGTAACGGCCGGTTTGTACTTCAACCGTCCGCAAATCAATGCCAAGGTACAGCTGATCAATCAAAATACGGGACAATCCATCATGAACGATCAGAGCACGCTCAATCCGAACAACATGCCTGTCATCACGATCAAGGATAAAGACAATCCGGCGGATAAGGTAAGCATCCAACCCTCTTCGACGGCAGAGGTGGAAGCATCGGTACATTTGGGTAGAACCGTACAGCCTTATATCGGCATCGGCTACGGATTTGCTGTTCCCGTATCGAGGGTATCTTTCTTTGCAGATCTCGGAATGCTTTTCTCCGGAAAAGCACAGATCTCGTCTCCCAATGTGATAGCGGGTGACCCGAACTTGCTGATTGACTTTTCCGAAGATGCACAGGAGGCGGTCTATTCGACACAGATACTTCCCGTACTCAACATAGGCGTTTCGATACGATTGTTC","7.90","1.20","29592","MRKKNLLLGVLALLFALPAIAQNDNNLHDGKIHYGTTVSVGVLNGVKIEGSARFMPELTARAGFAFIPSIAIIKNKVFEPDDPQELEAYQSVLGYTPGIRGNLKVSSFSGHMLADYHPFKNAFRVTAGLYFNRPQINAKVQLINQNTGQSIMNDQSTLNPNNMPVITIKDKDNPADKVSIQPSSTAEVEASVHLGRTVQPYIGIGYGFAVPVSRVSFFADLGMLFSGKAQISSPNVIAGDPNLLIDFSEDAQEAVYSTQILPVLNIGVSIRLF","441589 442407 [Shorter 489 780 99]","TIGR ID: PG0409","conserved hypothetical protein","Outer membrane, Periplasm, Cytoplasm","Its nearest neighbor in the NR database is gi:53715010 from Bacteroides fragilis YCH46.","
noIPR
unintegrated
unintegrated
signalp\"[1-21]?signal-peptide
tmhmm\"[5-23]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Mar 2 10:36:00 2005","Wed Mar 2 10:36:00 2005","Thu Feb 15 15:58:33 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 15 15:58:33 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540232","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Wed Mar 2 10:36:00 2005","","1","","","PG0409" "PG0374","442518","441628","891","TTGTCGTTATCTAAGACTGTATCCCCCAAAAAAACGAAAACAAACAGGGGAGACTGTCAGGAATTTGTCCTGACAGTCTCTCCCTGTTTGTTTGTGCTTCCTGCGTTTTTAGAACAATCGTATCGAAACGCCTATGTTGAGTACGGGAAGTATCTGTGTCGAATAGACCGCCTCCTGTGCATCTTCGGAAAAGTCAATCAGCAAGTTCGGGTCACCCGCTATCACATTGGGAGACGAGATCTGTGCTTTTCCGGAGAAAAGCATTCCGAGATCTGCAAAGAAAGATACCCTCGATACGGGAACAGCAAATCCGTAGCCGATGCCGATATAAGGCTGTACGGTTCTACCCAAATGTACCGATGCTTCCACCTCTGCCGTCGAAGAGGGTTGGATGCTTACCTTATCCGCCGGATTGTCTTTATCCTTGATCGTGATGACAGGCATGTTGTTCGGATTGAGCGTGCTCTGATCGTTCATGATGGATTGTCCCGTATTTTGATTGATCAGCTGTACCTTGGCATTGATTTGCGGACGGTTGAAGTACAAACCGGCCGTTACGCGGAAAGCGTTCTTGAACGGATGGTAATCAGCCAACATATGACCGGAAAAAGAGGATACCTTCAGATTCCCCCTGATCCCGGGTGTATAGCCCAATACCGACTGATATGCCTCCAACTCTTGGGGATCATCCGGCTCAAACACTTTGTTCTTGATAATGGCAATGGAGGGTATGAAGGCAAAGCCTGCACGAGCTGTCAGTTCGGGCATGAAGCGCGCGCTCCCCTCTATTTTGACGCCGTTCAATACACCTACCGAAACAGTTGTTCCATAATGGATCTTTCCATCATGAAGGTTGTTGTCGTTTTGAGCAATAGCCGGCAGAGCGAACAA","9.60","16.31","34272","LSLSKTVSPKKTKTNRGDCQEFVLTVSPCLFVLPAFLEQSYRNAYVEYGKYLCRIDRLLCIFGKVNQQVRVTRYHIGRRDLCFSGEKHSEICKERYPRYGNSKSVADADIRLYGSTQMYRCFHLCRRRGLDAYLIRRIVFILDRDDRHVVRIERALIVHDGLSRILIDQLYLGIDLRTVEVQTGRYAESVLERMVISQHMTGKRGYLQIPPDPGCIAQYRLICLQLLGIIRLKHFVLDNGNGGYEGKACTSCQFGHEARAPLYFDAVQYTYRNSCSIMDLSIMKVVVVLSNSRQSEQ","442518 441628 [Bad Olap 488 780 0]","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No hit found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Feb 15 16:00:00 MST 2001","","Thu Feb 15 16:00:00 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 15 16:00:00 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG0375","442757","446638","3882","GTGATACAAAAATTTACTAATGTAAAACTAAATGATATGCGAAAAATTTTGAGCTTTTTGATGATGTGCTCTCTGCATTTAGGTCTACAATCTCAGACTTGGCATGGAGATCCGGACTCAGTGGCAGCCCTACCTTCTATCGGTATTCAAGAGTCAAGTTGTACCCGAATCACGTTCGAGGTTGTTTTCCCCGGATTTTATAGTGTGGAAAAACGAGAAGGCAACCAAGTCTTTCAGCGCATTTCCATGCCGGGTTGTGGCTCGTTTGGGAATCTGGGCGAAGCTGAATTGCCTGTTTTGAAAAAGATGATAGCCGTTCCGGAATTTTCAACAGCTAACGTTGCTGTAAAAATCAAAGAGACGGAGACATTCGACAATTATAATATCTATCCTAATCCTACCTATGTCGTAGAGGAGTTGCCTGAGGGGGGGACTTATCTGGTAGAGGCTTTCGCGATAAACAATGACTATTATAGCCAAAATGTAAGCCTCCCTTCTACTCACTATGTCTATTCTCAAGACGGGTATTTTCGCTCACAAAGATTTATCGAAGTTACCCTGTATCCTTTTCGATACAACCCTGTCCGACAAGAAATTCTATTTGCAAAAAAAATCGAGGTTACAATAACTTTCGATAATCCTCAGCCACCTTTACAAAAAAACACCGGCATATTTAACAAAGTAGCCTCCTCTGCATTTATTAATTATGAAGCTGATGGCAAATCGGCGATAGAAAATGATATGGTGTTCAGTCGTGGTACAACAACGTACATAAGCGGAAATGTTGCCAGCAACCTCCCTCAGAACTGTGACTACTTGGTTATTTACGATGATATGTTCAACGTAAATCAACAACCACACGACGAAATCAAACGGCTGTGCGAACATAGAGCCTTCTACAACGGCTTTGATGTAGCTGCTGTAAGTATAAAGGACGTATTGAATAGCTTCCCATCAAATGCCACCTCATACATCAACGAAACTAAACTGAAAAATTTCATTCGCTCAGTTTACAACCAAAGCAATGCGAAGAGGACTTTAGATGGCAAACTGGGATACGTGCTACTGATCGGAAAACCATTGAGCAAATATTTGGCTGACACTGATAATACAAAAGTCCCAACCTCTTTTATTCATAATGTCTCCTTAATTCCAAGTCATCCAACTTTTGGTTCCATATGCGCCTCCGACTATTTTTTTAGTTGTGTTTCGCCCCTTGATACTGTCGGCGATTTGTTTATCGGTCGATTTAGCGTCACCAATGCTCATGAATTGCACAATCTGATTGAAAAGACTATCAACAAAGAAATCTCATATAATCCTATTGCACACAAAAATATTCTTTACGCAGAAGGGAAAGGCTGCGATGCTCCAATCTTACGTTTATTCTTAAAAGAAATCGCCTCTGGTTACACAGTCAACTCTATCTTAAAATCTAATCAGGTCTCTGCAATAGACTCGATATTTGACTGCTTGAATAATGGTTCCCATCATTTTTATTTTAACACTCATGGAATGCCGACTGTTTGGGGGATAGGGCAGGGACTCGACGTCAATACTCTAACAGCCCGATTGAACAATACATCTTCGCAGGGATTATGTACGAGTCTATCATGTAGTTCGGCTGTAGCAGATTCAACTATTAGATCGCTTGGAGAAGTCCTGACCACATACGCACCTAACAAGGGATTCTCGGCTTTCTTAGGAGGAAGCAGAGCCACCCAATATGCCGTTTATTTAGAAGGCCCCTGTCCTCCGTCAGAATTTTATGAATATTTACCTTATTCTTTATATCACAATCTCTCGACTGTTGTTGGCGAAATGTTGCTATCATCCATTATCAATACTAATTCTGTTGATACGTATTCGAAATTCAACTTCAATTTGCTTGGCGACCCTGCACTAAACATTATGGCTCATGGCATGGAGGTTAGTAATTGTATTACACTACCAAACAACACCATTATAAGCAGTCCGATAACAATAAAAAATGGTGGCTGCCTAAAAATACCGGAAAAAGGAGTTTTGCATTTTACTAATAATGGCTCCATACAAGTCATGTCCGGAGGAACTCTGGAAATAGGCAATCAGGCTAAAATATCCGGAGAGACCGGTGCTAACCCCACCTTTATTACCGTTTACGGCGATGGTCTTGCGATTAACAAGCAGGTAGAGATAGACAATATAGACCGACTTAACTTGTTTTCTACGCATTCGGTCATGCCCAAATTTCATTTTGACAGTGTGAAATTCAACAGTGCCCCGCTGTATACAACGAACTGTATTGTGGAGATAAGCAATTGCGAATTTACCAATCGAAGTGACATTATTTCAAAGAATTGTGACCTAAGCGTTGAAAACAGTATGTTTAGCAGTTCGGGGATAACGGTATTCAAGCCTATGGCTACAAGCTCCATCACCGGATTATCTACAAAAGCAAAGATTACCGACAATACTTTTTTTGCGACAGGAAACTTCGCCTACCATATCACAAACACGCCAGGCTTAACAGCAACCTCCAATGCTGCCATCAAGTTAGACAATATTCCTGAGTATTACATTTCCGGTAATAAAATAGTCAATTGCGATGAGGCTCTTGTACTAAATAATAGTGGCAACAGAACGAACAGACTCCACAATATCACACGGAATGTGATAAAAAACTGTAGGATTGGGAGCACGCTTTATAATTCCTATGGTATTTACAACCGAAATAAGATCAGTAACAATCATATAGGAGTACGTCTCCTCAACAACAGTTGTTTTTATTTCGATAATGCTCCTGTAATCAATGAAGAAGATAAGCAGACGTTTATTTCTAATAGGACTTGGCAGCTCTATTCATCAAACGGTACATTCCCTCTCAACTTCCATTACAACAGCTTGCAGGGGGGAGATACAGATACATGGATTTACAACGACACGTATACGAATCGCTATATTGACGTTTCAAATAATCACTGGGGCAACAATGATTTGTTTGATCCGAATCAGGTTTTCAATACGCCAGACTTGTTCATTTGGATACCTTTTTGGGATGGATTGCCAAATGGGAGATCGGGCAATAGCTCTGCTGAAGCAGTAGAATTCCAAACAGCATTGGACTGTATTGGCAATAGCGATTATCTTTCGGCAAAAGTGGCTCTCAAGATGATGGTTGAAACCTACCCGGAATCCGACTTTGCAATAGCTGCTTTGAAGGAATTGTTCAGGATAGAGAAAATGTCAGGCAACGATTACGAAGGCTTGAAAGATTATTTCAGATCCAATCCAACCATCATCTCTTCCCAGAACTTGTTCCCGACAGCTGATTTCCTGTCTGCGCGATGCGATATTGTGTGTGAAAACTATCAGTCTGCCATCGATTGGTACGAAAATCGCTTGAATAGTGAAATCTCCTATCAGGACAGTGTTTTTGCAGTCATTGACCTTGGTGACATTTATTGGAATATGCAGTTAGACTCACTCAGAGGGACTGGTATAGATTTGAACATACTTTCCTGTGAACAAAGGAAATCGCTCGAAAGCCATCAAAATGTAAAAAATTATTTGTTGTCAACTCTTCCCGAATCAACAGGTACTCTCCTGCCTCCATTAGAATGCAACAAATCAAGCCTTGATAAATCCAAGATAATCTCTATTTCGCCCAATCCGGCGAAAGCTGTTGTAACAATAATCTACTATACCGATAACCCTTCCTGTTCTGTAATAAAAATATATGGAATAAATGGAGCCTCGGCTGATATAACCGGGTTGCCCAAACATCTATCCGAAGGTTATTACAGCATACAGTTCAATACATCCAACTTTGATCCCGGTTTCTACCTGGTAACGCTAAATGTTGATCAGAAAATTATAGATACGGAAAAATTACGAATCAAA","5.50","-22.12","144008","VIQKFTNVKLNDMRKILSFLMMCSLHLGLQSQTWHGDPDSVAALPSIGIQESSCTRITFEVVFPGFYSVEKREGNQVFQRISMPGCGSFGNLGEAELPVLKKMIAVPEFSTANVAVKIKETETFDNYNIYPNPTYVVEELPEGGTYLVEAFAINNDYYSQNVSLPSTHYVYSQDGYFRSQRFIEVTLYPFRYNPVRQEILFAKKIEVTITFDNPQPPLQKNTGIFNKVASSAFINYEADGKSAIENDMVFSRGTTTYISGNVASNLPQNCDYLVIYDDMFNVNQQPHDEIKRLCEHRAFYNGFDVAAVSIKDVLNSFPSNATSYINETKLKNFIRSVYNQSNAKRTLDGKLGYVLLIGKPLSKYLADTDNTKVPTSFIHNVSLIPSHPTFGSICASDYFFSCVSPLDTVGDLFIGRFSVTNAHELHNLIEKTINKEISYNPIAHKNILYAEGKGCDAPILRLFLKEIASGYTVNSILKSNQVSAIDSIFDCLNNGSHHFYFNTHGMPTVWGIGQGLDVNTLTARLNNTSSQGLCTSLSCSSAVADSTIRSLGEVLTTYAPNKGFSAFLGGSRATQYAVYLEGPCPPSEFYEYLPYSLYHNLSTVVGEMLLSSIINTNSVDTYSKFNFNLLGDPALNIMAHGMEVSNCITLPNNTIISSPITIKNGGCLKIPEKGVLHFTNNGSIQVMSGGTLEIGNQAKISGETGANPTFITVYGDGLAINKQVEIDNIDRLNLFSTHSVMPKFHFDSVKFNSAPLYTTNCIVEISNCEFTNRSDIISKNCDLSVENSMFSSSGITVFKPMATSSITGLSTKAKITDNTFFATGNFAYHITNTPGLTATSNAAIKLDNIPEYYISGNKIVNCDEALVLNNSGNRTNRLHNITRNVIKNCRIGSTLYNSYGIYNRNKISNNHIGVRLLNNSCFYFDNAPVINEEDKQTFISNRTWQLYSSNGTFPLNFHYNSLQGGDTDTWIYNDTYTNRYIDVSNNHWGNNDLFDPNQVFNTPDLFIWIPFWDGLPNGRSGNSSAEAVEFQTALDCIGNSDYLSAKVALKMMVETYPESDFAIAALKELFRIEKMSGNDYEGLKDYFRSNPTIISSQNLFPTADFLSARCDIVCENYQSAIDWYENRLNSEISYQDSVFAVIDLGDIYWNMQLDSLRGTGIDLNILSCEQRKSLESHQNVKNYLLSTLPESTGTLLPPLECNKSSLDKSKIISISPNPAKAVVTIIYYTDNPSCSVIKIYGINGASADITGLPKHLSEGYYSIQFNTSNFDPGFYLVTLNVDQKIIDTEKLRIK","442757 446638","TIGR ID: PG0410. Reported by Chen et al., 2004, to be highly divergent in ATCC 33277.","conserved hypothetical protein","Outer membrane, Cytoplasm, Extracellular","Matches weakly to gi:54303602 from Photobacterium profundum SS9.Corresponds to N-terminal stretch of kgp (PG1605).","
InterPro
IPR001865
Family
Ribosomal protein S2
PS00962\"[17-28]?RIBOSOMAL_S2_1
InterPro
IPR002114
PTM
Phosphotransferase system, HPr serine phosphorylation site
PS00589\"[1130-1145]?PTS_HPR_SER
InterPro
IPR006626
Repeat
Parallel beta-helix repeat
SM00710\"[810-832]T\"[849-870]T\"[897-918]TPbH1
noIPR
unintegrated
unintegrated
signalp\"[1-31]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Tue Feb 22 13:50:17 2005","Wed Mar 2 10:50:13 2005","Wed Mar 2 10:50:13 2005","Sat Feb 24 19:19:23 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 13 to 571 share 21% identity with PG1605, a porphypain polyprotein; lys-X proteinase/hemagglutinin.","Sat Feb 24 19:19:23 MST 2001","Tue Feb 22 13:50:17 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Jun 14 13:18:58 MDT 2001","34540233","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293Chen T, Hosogi Y, Nishikawa K, Abbey K, Fleischmann RD, Walling J, Duncan MJ.Comparative whole-genome analysis of virulent and avirulent strains of Porphyromonas gingivalis.J Bacteriol. 2004 Aug;186(16):5473-9.PMID: 15292149","","Wed Mar 2 10:50:13 2005","","1","","","PG0410" "PG0376","446641","449415","2775","ATGGCTATCATGATGAAAAGTATTGTTTTTAGAGCATTTCTAACGATTTTGCTCTCGTGGGCAGCGATCACGAATCCGACTGCTCAAGAGATCTCAGGCATGAATGCATCCTGTCTGGCTGCTCCGGCTCAACCGGATACTATCTTATATGAAAGTTTTGAGAATGGACCTGTTCCCAATGGCTGGCTTGAGATAGATGCTGATGCTGATGGTGCCACTTGGGGAAGCCCATCAGGCTCTTTCTCTGTACCTTACGGACACAATGGCCTTTGCACCTACTCCCATATACGTTCCGGTATCTCAACAGCGGGCAACTATCTGATTACACCCAATATAGAAGGAGCCAAACGGGTCAAGTACTGGGTATGCAATCAGTATAGTACCAATCCGGAACATTACGCAGTAATGGTATCGACAACGGGGACTGCCATTGAAGACTTTGTTTTGTTGTTTGATGATTCCATAACAGGGAAACCGACTCCTCTTGTATGGCGTAGACGAATCGTGGACTTACCGGAAGGGACCAAATATATTGCATGGCGACATTACAAAGTCACCGACTCACACACAGAATTCTTGAAATTGGATGATGTCACTGTGTATAGGTCGATCGAAGGGCCCGAACCTGCTACCGACTTCACAGTAATCAATATTGGTCAGAATGTGGGACGATTGACTTGGAACTATCCGGAGGATTATCAACCGGAAGGAAAGGGGAATGAAGAGTTGCAGCTTAGCGGCTACAACATCTATGCGAACGGTACACTACTGGCACAAATAAAAGATGTCTCCATACTGGAGTATGTGGACAGCACTTACTCTTTGCGAGACAATCCCTTGCAAGTGGAGTACTGCGTTACAGCCGTTTACGATGAAAGCATAGAATCTTCGACCGTATGTGGCACGCTGCATTACGCCACGGATGCCATCCTTTATGAAAATTTTGAGAATGGACCTGTTCCCAATGGTTGGCTTGTGATAGACGCTGATGGAGATGGATTTAGCTGGGGACACTATTTGAATGCATACGACGCTTTTCCCGGCCATAATGGAGGCCATTGCTCCTTGTCGGCTTCTTATGTTCCGGGTATAGGCCCGGTGACTCCCGACAACTATCTGATTACCCCCAAGGTTGAAGGAGCCAAACGTGTCAAGTACTGGGTAAGCACGCAGGATGCCAATTGGGCAGCGGAACATTACGCGGTGATGGCTTCGACAACGGGGACTGCTGTCGGAGATTTCGTCATATTGTTCGAAGAAACCATGACAGCGAAGCCGACCGGCGCATGGTATGAAAGAACCATCAACTTACCTGAAGGGACTAAATACATCGCATGGCGGCATTACAACTGTACCGATATATATTTCTTGAAGTTGGACGATATCACTGTATTCGGGACTCCTGCATCAGAGCCCGAACCTGTTACCGATTTCGTTGTCTCGCTTATTGAAAACAACAAGGGACGATTAAAGTGGAATTATCCTAACGGCTACGAACCCGATAAGACTGATGATAAAGACCCATTGCAGCTTGCCGGCTACAATATCTATGCAAACGGCTCGCTCCTTGTTCACATACAAGACCCGACTGTTTTGGAGTATATCGATGAGACTTATTCTTCACGAGACGATCAGGTGGAAGTGGAATATTGTGTCACTGCCGTTTATAACGACAATATCGAGTCCCAATCGGTTTGCGATAAGCTGATTTATGATTCTCAATCGGACATTATCTTATATGAAGGCTTTGAGGCCGGAAGTATTCCTGAAGGCTGGTTGTTGATTGATGCTGATGGCGACAATGTTAATTGGGACTATTATCCTTGGACTATGTATGGACATGACAGTGAGAAGTGTATTGCATCCCCTTCGTACTTACCGATGATTGGCGTTTTAACTCCGGATAACTATTTGGTTACACCCAGACTCGAAGGAGCCAAGCTTGTCAAGTATTGGGTAAGTGCGCAAGATGCTGTTTATTCGGCTGAGCATTATGCTGTGATGGTTTCTACTACGGGAACTGCTGTTGAAGATTTTGTCCTCTTGTTCGAAGAGACAATGACCGCTAAGGCTAACGGTGCATGGTATGAGCGAACTATTACATTGCCTGCAGGAACAAAATATATTGCCTGGCGGCATTATGATTGCACCGATATGTTTTTCTTGCTCTTGGATGACATTACGGTTTATCGTTCTACTGAGACTGTTCCCGAGCCTGTTACTGATTTCGTTGTCTCGCTTATTGAGAATAACAAGGGTCGCCTGAAATGGAATTATCCTAACGGCTACGAACCCGATAAGACTGATGATAAAAAACCATTGCAGCTTACCGGCTACAACATCTATGCAAATGGCTCGCTCCTTGTTCACATACAAGACCCGACTGTTTTGGAGTATATCGATGAGACTTATTCTTCACGAGACGGTCAGGTGGAAATGGAATATTGTGTCACTGCCGTTTATAACGACAATATCGAGTCCCAATCGGTTTGCGATAAGCTGAACTATACTATCACATCCTTGGATAATATTCAATCTGATACAAGCTTGAAAATATATCCTAATCCGGCATCGTATGTGGTAAGGATAGAGGGATTGAGTCGGAGCAAGTCGACAATCGAGTTGTATAATGCGCTGGGAATTTGCATATTAAGGGAAGAGACTCATTCAGAGAAAACGGAAATCGATGTTTCACGTCTCAATGACGGAGTCTACTTGATTAAAGTAGTCGGTGGAAATAAAACAACAACCGAAAAGGTAGAGATAAAGAGGCCG","4.30","-61.46","103629","MAIMMKSIVFRAFLTILLSWAAITNPTAQEISGMNASCLAAPAQPDTILYESFENGPVPNGWLEIDADADGATWGSPSGSFSVPYGHNGLCTYSHIRSGISTAGNYLITPNIEGAKRVKYWVCNQYSTNPEHYAVMVSTTGTAIEDFVLLFDDSITGKPTPLVWRRRIVDLPEGTKYIAWRHYKVTDSHTEFLKLDDVTVYRSIEGPEPATDFTVINIGQNVGRLTWNYPEDYQPEGKGNEELQLSGYNIYANGTLLAQIKDVSILEYVDSTYSLRDNPLQVEYCVTAVYDESIESSTVCGTLHYATDAILYENFENGPVPNGWLVIDADGDGFSWGHYLNAYDAFPGHNGGHCSLSASYVPGIGPVTPDNYLITPKVEGAKRVKYWVSTQDANWAAEHYAVMASTTGTAVGDFVILFEETMTAKPTGAWYERTINLPEGTKYIAWRHYNCTDIYFLKLDDITVFGTPASEPEPVTDFVVSLIENNKGRLKWNYPNGYEPDKTDDKDPLQLAGYNIYANGSLLVHIQDPTVLEYIDETYSSRDDQVEVEYCVTAVYNDNIESQSVCDKLIYDSQSDIILYEGFEAGSIPEGWLLIDADGDNVNWDYYPWTMYGHDSEKCIASPSYLPMIGVLTPDNYLVTPRLEGAKLVKYWVSAQDAVYSAEHYAVMVSTTGTAVEDFVLLFEETMTAKANGAWYERTITLPAGTKYIAWRHYDCTDMFFLLLDDITVYRSTETVPEPVTDFVVSLIENNKGRLKWNYPNGYEPDKTDDKKPLQLTGYNIYANGSLLVHIQDPTVLEYIDETYSSRDGQVEMEYCVTAVYNDNIESQSVCDKLNYTITSLDNIQSDTSLKIYPNPASYVVRIEGLSRSKSTIELYNALGICILREETHSEKTEIDVSRLNDGVYLIKVVGGNKTTTEKVEIKRP","446641 449415","Ross, et al.(2001) select PG0376 as one of fifteen vaccine candidate antigens, based on in vitro and in vivo laboratory studies of 120 candidates screened by bioinformatics techniques from the whole W50 genome.TIGR ID: PG0411","possible outer membrane protein","Extracellular, Outer membrane, Cytoplasm","Previously sequenced and submitted to GenBank as gb|AAG24228.1| (AY007522), a putative outer membrane protein PG57 from strain W50, P.gingivalis. All significant hits are to P.gingivalis domains, e.g.Residues 312 to 742 share 34% identity and residues 597 to 729 share 47% identity with gb|AAB60809.1| (U75366), a lysine-specific cysteine proteinase in Porphyromonas gingivalis.Residues 312 to 742 share 34% identity with emb|CAA68897.1| (Y07618), a TonB-linked adhesin in Porphyromonas gingivalis.Residues 312 to 742 share 34% identity with gb|AAB17128.1| (U41807), hemagglutinin A in Porphyromonas gingivalis.There are several other matches to lysine-specific cysteine proteinase porphypain in P. gingivalis.","
InterPro
IPR003961
Domain
Fibronectin, type III
SM00060\"[207-296]T\"[472-562]T\"[737-918]TFN3
InterPro
IPR008957
Domain
Fibronectin, type III-like fold
SSF49265\"[467-671]T\"[734-782]TFN_III-like
InterPro
IPR011628
Domain
Cleaved adhesin
PF07675\"[46-200]T\"[308-464]T\"[576-729]TCleaved_Adhesin


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 578-725 are 40% similar to a (PROTEASE PRECURSOR SIGNAL HEMAGGLUTININ THIOL REPEAT) protein domain (PD001858) which is seen in P96967_PORGI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Wed Nov 7 14:19:43 2001","Tue Jun 12 11:39:20 MDT 2001","Thu Mar 29 15:29:26 MST 2001","Sat Feb 24 19:39:29 MST 2001","","Sat Feb 24 19:39:29 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 312-742 share ~35% identity with four domains of PG1602, a hemagglutinin/adhesin precursor; hagA:residues 232-678,residues 691-1130,residues 1143-1582,residues 1595-2056.Residues 47-464 share ~33% identity with the same four domains of PG1602:residues 232-678,residues 688-1130,residues 1140-1582,residues 1592-2031.Residues 580-742 share 38% identity with two of these domains of PG1602:residues 691-886,residues 1143-1338.Residues 42-200 share ~35% identity with four domains of PG1602:residues 502-678,residues 954-1130,residues 1406-1582,residues 1833-2063.The same domains mentioned above show similarity to multiple domains in:PG1164, tonB linked outer membrane receptor, PG1605, a porphypain polyprotein, PG1768, a arginine-specific cysteine proteinase, gingipain R1, PG1606, a hemagglutinin-related protein (to a lesser degree).","Wed Mar 28 17:55:54 MST 2001","Sat Feb 24 19:39:29 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Mar 28 17:45:22 MST 2001","34540234","Wed Mar 28 18:13:13 MST 2001","See Proteases/Hemagglutinin Analysis
Ross BC, Czajkowski L, Hocking D, Margetts M, Webb E, Rothel L, Patterson M, Agius C, Camuglia S, Reynolds E, Littlejohn T, Gaeta B, Ng A, Kuczek ES, Mattick JS, Gearing D, Barr IG, Identification of vaccine candidate antigens from a genomic analysis of Porphyromonas gingivalis, Vaccine 2001 Jul 20;19(30): 4135-42, PMID: 11457538.","","Wed Nov 7 14:19:43 2001","","1","","","PG0411" "PG0377","451530","449677","1854","ATGAGCGACGTCATACGCCTCCTGCCGGACAGTATCGCCAATCAAATTGCTGCCGGTGAAGTAATCCAACGTCCGGCCTCGGTCGTCAAGGAGCTATTGGAAAACGCATTGGATGCCGGCGCTTCCATTATCAGGCTGGATGTCAGGGAGGCCGGTCGCGAATTGATACGCGTCACAGACAACGGCAAGGGCATGAGCCAAAGCGATGCCCGAATGGCTTTCGAGCGACATGCCACTTCCAAGATAGCTTCTTTTCAGGATCTGTTCAGCCTTCGGACGATGGGTTTTCGAGGTGAAGCCCTGGCTTCGATTGCAGCCGTTGCACAAGTGGAACTCCTAACCCGAAGGGCTGAAGATGAATTGGGTACGCGCCTTACCATCAATGGCTCCGAAGTAGGCGAAGTGGCTACTGTCACCTCTCCACTGGGCTGTATTCTTTGTGTGAAGAACCTCTTCTACAATGTACCGGCACGTCGAAAATTCCTCAAATCGAATGAAACGGAATTTCGGCACATCCTGACCGAATACGAACGGGTGGCTTTGGTCAATCCGCAAGTCGCTTTTTCTATCTACCATTCGGGTGAGCTGGTGCAGGATCTGCCTCCTTCTCCTCTGAAGAAAAGAATCCTCGATGTATTCGGGAAGAGAATGGAGAAAGATCTGATACCCATCGGGATGAAAAGCCCCATAACCAATATATCCGGCTTCGTAGGGCGCCCCGATGGTGCTCGCAAACGAGGTGCCCTGCAATACTTCTTCGTGAACGGACGCTTCATGCGTCATCCTTACTTCCACAAAGCCGTGATGGCTGCCTATGAGGCGATCATTCCTCAGGGAACGATGCCCAATTACTTCCTGTATTTCGATCTTGAACCCTCCCAGATCGATGTCAATATCCACCCGACCAAAACTGAAATCAAGTTCTCCGACGAACAGGCTATTTTCAAACTCATCGGTGTGGTCATTCGTGAAGCACTCAGCTCCAGCAATGCAGTACCGGCCATTGACTTCGACCGCAAAGAACTGATCGACATCCCTGCCTATCAAGGCCCGGGGAAAAACGTAGTTCGTCCGCCCGTAGATCTGGATCCATCGTATAATCCCTTCAAAGAAACCGGACTGACGGAGCCTATCCGCAGTTCGCGGCGTCAATCGCCGGATATGGGCTGGAACGAACTCTTCAAGCAGTTCGAAGCCAAGCGAGATGCCGAGAAGATGGCAGAACCACCGATCCGCTCGGAAGAGCTGTTCGCCTCGACCGATTTTACTCCCTCTGCCGTATCTGCGACTCCCTCCACCGATATGCTCTGCTATGTCCATCGCGGCCGTTATCTGGTGACTACTCTGAGTAGGGGTTTGGCTTTGGTCGATTTCCACCGCGCACACAAGCGTATTCTTTACGATCGTTTCATGGCCGACGAATCAAGACGTCATATCGAACAGCAACAACTTCTCTTCCCCGAACTCCTCGAATTCAATCCGTCGGATGCTTCTGCCGTGAAGGCAGCTGTGGACGAACTCCAATCTGTCGGGTTCGATTTGTCGCCCCTCGGTGTCTCTTCCTATTCGCTGCTGGCAGCACCTGTACAAATCATAGACTGTGCGGCAGATGTCGTGCGGGATGTCATCCATACTACACTCGAAGATGGCAGATCATCGCATGAACAAATGCTCGAACTGATTGCCACCCAAATAGCCGAGTATCAAGCCATCCCTTGTGGCAAGACACCGACAGCAGAAGAGGCCAGCGATCTCTTGGCCGAGCTTTTTGCTTCGAACGACTCCACCTATACGCCGGACGGCAAGCTCATCGTCAGTATCATCGAAGAGGCAGATATAGCGCGCCGCTTCGAG","5.40","-12.27","68807","MSDVIRLLPDSIANQIAAGEVIQRPASVVKELLENALDAGASIIRLDVREAGRELIRVTDNGKGMSQSDARMAFERHATSKIASFQDLFSLRTMGFRGEALASIAAVAQVELLTRRAEDELGTRLTINGSEVGEVATVTSPLGCILCVKNLFYNVPARRKFLKSNETEFRHILTEYERVALVNPQVAFSIYHSGELVQDLPPSPLKKRILDVFGKRMEKDLIPIGMKSPITNISGFVGRPDGARKRGALQYFFVNGRFMRHPYFHKAVMAAYEAIIPQGTMPNYFLYFDLEPSQIDVNIHPTKTEIKFSDEQAIFKLIGVVIREALSSSNAVPAIDFDRKELIDIPAYQGPGKNVVRPPVDLDPSYNPFKETGLTEPIRSSRRQSPDMGWNELFKQFEAKRDAEKMAEPPIRSEELFASTDFTPSAVSATPSTDMLCYVHRGRYLVTTLSRGLALVDFHRAHKRILYDRFMADESRRHIEQQQLLFPELLEFNPSDASAVKAAVDELQSVGFDLSPLGVSSYSLLAAPVQIIDCAADVVRDVIHTTLEDGRSSHEQMLELIATQIAEYQAIPCGKTPTAEEASDLLAELFASNDSTYTPDGKLIVSIIEEADIARRFE","DNA Mismatch Repair","From Prosite PDOC00057: Mismatch repaircontributes to the overall fidelity of DNAreplication. It involves the correction ofmismatched base pairs that have been missed by theproofreading element of the DNA polymerasecomplex. The sequence of some proteins involved inmismatch repair in different organisms have beenfound to be evolutionary related. TIGR ID: PG0412","DNA mismatch repair protein","Cytoplasm","This sequence is similar to CT575 and to BT3851.Numerous significant hits in gapped BLAST to DNA mismatch repair protein MutL; e.g. residues 1-617 are 31% similar to M29686 of Streptococcus pneumoniae, residues 5-617 are 33% similar to AE005744 of Caulobacter crescentus, residues 5-617 are 31% similar to AE003917 of Xylella fastidiosa.","
InterPro
IPR002099
Family
DNA mismatch repair protein
PTHR10073\"[66-332]TDNA_mis_repair
InterPro
IPR003594
Domain
ATP-binding region, ATPase-like
G3DSA:3.30.565.10\"[1-217]TATP_bd_ATPase
PF02518\"[20-81]THATPase_c
SM00387\"[20-133]THATPase_c
SSF55874\"[1-216]TATP_bd_ATPase
InterPro
IPR013507
Domain
DNA mismatch repair protein, C-terminal
PF01119\"[214-327]TDNA_mis_repair
InterPro
IPR014762
Domain
DNA mismatch repair, MutL/HexB/PMS1
PS00058\"[95-101]?DNA_MISMATCH_REPAIR_1
InterPro
IPR014763
Domain
DNA mismatch repair protein, N-terminal
TIGR00585\"[3-307]Tmutl
InterPro
IPR014790
Domain
MutL, C-terminal, dimerisation
PF08676\"[440-577]TMutL_C
noIPR
unintegrated
unintegrated
PTHR10073:SF12\"[66-332]TPTHR10073:SF12
SSF54211\"[214-327]TSSF54211


","BeTs to 10 clades of COG0323COG name: DNA mismatch repair enzyme (predicted ATPase)Functional Class: LThe phylogenetic pattern of COG0323 is ----Yqvceb-h----olinxNumber of proteins in this genome belonging to this COG is 1","***** IPB002099 (DNA mismatch repair proteins mutL/hexB/PMS1) with a combined E-value of 2.1e-68. IPB002099A 14-65 IPB002099B 76-114 IPB002099C 143-160 IPB002099D 295-308","Residues 8-318 are 41% similar to a (PROTEIN MISMATCH REPAIR DNA) protein domain (PD002741) which is seen in HEXB_STRPN.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","Wed Mar 22 15:23:48 MST 2000","Sat Jan 3 09:49:42 2004","Wed Mar 22 15:23:48 MST 2000","Sat Jan 3 09:49:42 2004","Wed Jun 6 13:06:40 MDT 2001","Fri Feb 23 16:08:31 MST 2001","Fri Feb 23 16:08:31 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Feb 23 16:08:31 MST 2001","-61% similar to PDB:1B62 MUTL COMPLEXED WITH ADP (E_value = 2.2E_60);-61% similar to PDB:1B63 MUTL COMPLEXED WITH ADPNP (E_value = 2.2E_60);-61% similar to PDB:1BKN CRYSTAL STRUCTURE OF AN N-TERMINAL 40KD FRAGMENT OF E. COLI DNA MISMATCH REPAIR PROTEIN MUTL (E_value = 2.2E_60);-61% similar to PDB:1NHH Crystal structure of N-terminal 40KD MutL protein (LN40) complex with ADPnP and one Rubidium (E_value = 2.2E_60);-61% similar to PDB:1NHI Crystal structure of N-terminal 40KD MutL (LN40) complex with ADPnP and one potassium (E_value = 2.2E_60);","","","Residues 20 to 117 (E-value = 5.6e-07) place PG0377 in the HATPase_c family which is described as Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (PF02518)Residues 214 to 327 (E-value = 1.4e-22) place PG0377 in the DNA_mis_repair family which is described as DNA mismatch repair protein, C-terminal domain (PF01119)","Sat Jan 3 09:49:42 2004","34540235","","","","","","1","","","PG0412" "PG0378","451871","451530","342","ATGGGATTAGGATCATTCTATAAACAGCGTAAGCCCCGGTCTTTTGACCACAAACCTATCTATTACGATCAGCGACGCGATGAGTTGGAGAAACGTATCGAACGCATTAGACGCGAAGTAGAACAGGAGGAGCAAGCAGAGCTGGACGGACAGTCTTCATCACACGACTACTCCGGCTATCGCCCTCGTATACGCGGAACATTTGTGGAAGGTACCCAGCATCTGAAGGAGCGACAGCTGCAAGGCGAGACACAATCCACTCGCTCGGGACGAACACTCCGTACGTTGGCTTTGCTCATAGCCGTTTGTTTGCTATCGTGGTTGGTTTTTAAGGTCATCTTA","10.40","5.67","13496","MGLGSFYKQRKPRSFDHKPIYYDQRRDELEKRIERIRREVEQEEQAELDGQSSSHDYSGYRPRIRGTFVEGTQHLKERQLQGETQSTRSGRTLRTLALLIAVCLLSWLVFKVIL","451871 451530","TIGR ID: PG0413","hypothetical protein","Cytoplasm, Inner membrane","No significant hit found in gapped BLAST with E value less than e-04.","
noIPR
unintegrated
unintegrated
tmhmm\"[95-113]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Feb 15 16:04:01 MST 2001","","Thu Feb 15 16:04:01 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 15 16:04:01 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540236","","","","","","1","","","PG0413" "PG0379","453742","451865","1878","ATGAGAAAGGGAGAAAAACGAGAATCTCGGCTCGGTAGCCGACAACTGGGGGCGATAATTCTGATCGTCACTCTCTCTTTTTCTGCCCTTGCCTCTCTCCAAGGTCCCCCTCCCAAAGGGAGTAAGGGGAAAACGCATGTCATCCTCGAACATGCCGATGAACTCCGTTACGACAGACTCTACAACCCCGATGTACAGCGTCTGCTTGGCAATGTCGTGATCAAGCATGAAGGAGCTGTGATGCGCTGCGACAGCGCTCATCTTAATCAGGAAGAGAACACTTTCGAAGCATTCGGCCAAGTTTCCATGCAGCAGGGCGACACCGTATCCATGTTCGCCCGCTATCTCCATTATGATGGAAACATCAAATACGCTCGTCTTCGCCATGAAGTGCGACTGGAAAATCGTTCGGCTACTCTCTTTACGGATAGTTTGGATTATGACCGGGTCATGAACCTGGGCTACTATTTCGAAGGTGGTAGCATAGTCGACTCTCTCAATACGCTGACTTCCAGCTATGGAGAATATTCTCCCACCACATCCGATGCCATCTTCCGAGATAATGTCCATTTGGAAAATAAGGACTATACCATGGACACGGAAGAACTTCATTATAATACAGATACCAAGATCAGTCACATATTGGGGCCTACGGAGATGAGATCGGACTCCGGCTATATCGTTTCTACGCGAGGAGTGTACGATTCGAACACCGATGTAGGCATTTTGCTGGATCGCTCCATCGTTTATTCCTCCAACGGGGCCAAGCAATTGACGGGGGACTCGATCTTTTACGACCGTCGTACCGGTTTTGGCGAAGCCTTCGGCAATATGATCCTCACCGATACGGTGAACCGTTCTTCTCTTTATGGGGAGTATGGTTATTACGATGAGAAGAAGGACTATGCTTTTGCCACCCAACGATCTTATATGATCGACTTTTCCAAACCCGACACCTTGTGGGCAGCAGCCGACACGCTTGAGATGATCACGCAGCGTCGCGTCCCCGAGGATAGGCGGATAGCACGCGGGTACAGACATGTACGGGTTTATCGAACTGATGTCCAAGCCATTGCCGACTCTATGCAGTACGACTCTCGCGATTCTCTGCTCTACCTTTATGACAACCCCATTATGTGGAATGAAGACTCCCAGTTGAGCGGCGATACGATCCGGTTCAAATTCCGCAACGACAGTCTGGACTATGTCGATGTGCTTACCAAGGCTCTTGCCGTTCGGCGGATAGATTCCGTCATGTATGACCAGCTGGCCGGCAGACATATCAGAGCCTATATGCAGGACAGCCTTGTACGCCAGATACAGGTGCATGGCAATGCCGAAGTCATCCAATACGAACAGCACAAACGATCGAAACGCTGGTATCTGATGAATCGAATCGAAGCTCCCTCTATAATTGCCGATTTCGAAGAAGGCCAACTCAAGAAAGTACTCTTGCGTGGAGTGGCATCGGGCAAAGGCTACCCGATCAAAATGCTCACGCCCGATCTTCAACGCTTGGCCTCTTTTCGATGGGAGGAGGCTGTCAGGCCGAAATCGAAGGAGGATCTTTTCCGCAGGCAGCCGGATTCCGTCTTGCAGGTGCATCGATCGCTGTCCGATTTGCGACGCTTTAGCGGTGCTTTGGCAGCCCTTCGTGCATACACGGCTCTGGCCGAAGAGGAGAGAAAAGACTCATTGACAATCGCTGCCCTACAGACCGACTCCATTCCTCCGACACCTGCAGCCGGCAAAGAGGCTACCGATCCTACAGACCGGCTCTCTCCTTATATTGCCCGACCTACTACGGACACCAAAGAGGAAGGCTTCTTCGATCTTTTCTTCACTCCATTCATCTTTAATAGAGAAAAACTATGGGAT","6.40","-4.61","71778","MRKGEKRESRLGSRQLGAIILIVTLSFSALASLQGPPPKGSKGKTHVILEHADELRYDRLYNPDVQRLLGNVVIKHEGAVMRCDSAHLNQEENTFEAFGQVSMQQGDTVSMFARYLHYDGNIKYARLRHEVRLENRSATLFTDSLDYDRVMNLGYYFEGGSIVDSLNTLTSSYGEYSPTTSDAIFRDNVHLENKDYTMDTEELHYNTDTKISHILGPTEMRSDSGYIVSTRGVYDSNTDVGILLDRSIVYSSNGAKQLTGDSIFYDRRTGFGEAFGNMILTDTVNRSSLYGEYGYYDEKKDYAFATQRSYMIDFSKPDTLWAAADTLEMITQRRVPEDRRIARGYRHVRVYRTDVQAIADSMQYDSRDSLLYLYDNPIMWNEDSQLSGDTIRFKFRNDSLDYVDVLTKALAVRRIDSVMYDQLAGRHIRAYMQDSLVRQIQVHGNAEVIQYEQHKRSKRWYLMNRIEAPSIIADFEEGQLKKVLLRGVASGKGYPIKMLTPDLQRLASFRWEEAVRPKSKEDLFRRQPDSVLQVHRSLSDLRRFSGALAALRAYTALAEEERKDSLTIAALQTDSIPPTPAAGKEATDPTDRLSPYIARPTTDTKEEGFFDLFFTPFIFNREKLWD","453742 451865","TIGR ID: PG0414","conserved hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04 with exception of a strong match to BT3849.","
noIPR
unintegrated
unintegrated
signalp\"[1-31]?signal-peptide
tmhmm\"[15-33]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Dec 26 14:16:41 2003","Fri Dec 26 14:16:41 2003","Thu Feb 15 16:05:36 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 15 16:05:36 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540237","","","","","","1","","","PG0414" "PG0380","455186","453807","1380","ATGAAAAAGAATGGAATGCGCATCTGCATAATCATGTTGTCGTTGCTCTACTGGGCACTCCCCTCAATGGGACAGAAGAACGTGATCGACGAAGTCGTATGGATGGTGGGAGACGAACCGATTCTGCGCTCAGACATAGAGGCTACCAAACGTTTTTTGCTCAGTTCGGGACGCCCTCTTGAAGGGAATGCAGACTGCTATATTCCTGAGCAGATTGCCGTCCAAAAGCTTTTTCTCAATCAAGCCAAGATAGACAGTATCGAAGTCAATGAGGCAGATGTAAACCGGTATGTGGATATGTATCTGGCCGATTATATCCAGCAGTTCGGCTCCAAAGAAAAGATGGAAGAATACTTCAATCGGAAGTACACACAGATACGCGAAGAACAACGTGTAGAGGTTCGGAATAGTGAGATCGTTCGCATGATGCGAAAAAAAATCGATGAAAACGTAAAGGTTACTCCTTCTGAAATTCGTCAGTACTTTGCATCGCTTCCTCAGGATAGTTTGCCCTATATCCCTACAACTGTGGAGGTACAATTACTTGCCATCAAGCCGGTAATCTCTCTGCATGAAACGGATGCTATCAAGAAGAGATTGCGCGAATTCTCGGATGAGATCAATGAAGGACGACGCGATTTCACTACGCTGGCCCGTTTGTACTCCGAAGACTCCAAGACTGCTTTACAGGGTGGCGAATACGGCTTTGTCAGCAAGGCTTCGCTGGATGCGGAGTTTGCTCGCGTGGTTTTTTCACTTACTGATACGAAGCGTGTTTCCCCGATCATTAAAACCGACGACGGCTATCATATCGTTCAGCTCATAGAGAAACGAGGCGATGTGATCAATTTCCGACAGATCGTACTCAAACCCAAAGTATCTGATGCTGCCTTGACGGAAACTACAAACAAGCTGGATAGCTTGTACTCCCTGATAAAAGGAAATAAGCTGACCTTTGAAAAAGCCGTTGCCCAATACTCTGAAGATAACGATACGCGCAACAATCAGGGACTTATGGTCAATAAGCTCCAGCAGAGCGATTTTTATAGTTCCTCCCGCTTCAAGTACGAAGAGTTGCCACAAGACATCAGCCGAGTTGTCTACAATATGAAGCCCGGTGAAGTTTCCAAGCCTTTTATTCTCAAAACGGACAAAGGTAATGAGGAGGTTGTCATCGTGAAGATCAAAAATCTGATCGAAGGACACCGAGCCAACATGAACTCCGATTTCCAAACGATCAAGGCCTTAGCCCTAAACAAAAAGAAAGAAGGAGTTGTCGATGCATGGATAAGGAAGAAGCAAAAAGAAACTTATATCCACATCGAACCTGCCTACCGCAACTGTCAGTTCCGCTATCCGGGCTGGCTTGAAGACAGACAA","8.70","3.87","53273","MKKNGMRICIIMLSLLYWALPSMGQKNVIDEVVWMVGDEPILRSDIEATKRFLLSSGRPLEGNADCYIPEQIAVQKLFLNQAKIDSIEVNEADVNRYVDMYLADYIQQFGSKEKMEEYFNRKYTQIREEQRVEVRNSEIVRMMRKKIDENVKVTPSEIRQYFASLPQDSLPYIPTTVEVQLLAIKPVISLHETDAIKKRLREFSDEINEGRRDFTTLARLYSEDSKTALQGGEYGFVSKASLDAEFARVVFSLTDTKRVSPIIKTDDGYHIVQLIEKRGDVINFRQIVLKPKVSDAALTETTNKLDSLYSLIKGNKLTFEKAVAQYSEDNDTRNNQGLMVNKLQQSDFYSSSRFKYEELPQDISRVVYNMKPGEVSKPFILKTDKGNEEVVIVKIKNLIEGHRANMNSDFQTIKALALNKKKEGVVDAWIRKKQKETYIHIEPAYRNCQFRYPGWLEDRQ","455186 453807","TIGR ID: PG0415","conserved hypothetical protein(possible peptidyl-prolyl isomerase)","Periplasm, Cytoplasm","Residues 29 to 442 share 25% identity with gb|AAG03983.1|AE004495_7 (AE004495), a peptidyl-prolyl cis-trans isomerase SurA in Pseudomonas aeruginosa.Residues 29 to 441 share 20% identity with gb|AAF93618.1| (AE004131), survival protein SurA in Vibrio cholerae.This region also shares weak identity with several other bacterial peptidyl-prolyl cis-trans isomerases.This sequence is similar to BT3848.","
InterPro
IPR000297
Domain
Peptidyl-prolyl cis-trans isomerase, PpiC-type
PF00639\"[181-276]TRotamase
PS50198\"[174-276]TPPIC_PPIASE_2
noIPR
unintegrated
unintegrated
G3DSA:3.10.50.40\"[170-279]TG3DSA:3.10.50.40
PTHR10657\"[194-353]TPTHR10657
SSF54534\"[167-276]T\"[280-403]TSSF54534
SSF81827\"[29-182]TSSF81827


","BeTs to 7 clades of COG0760COG name: Parvulin-like peptidyl-prolyl isomeraseFunctional Class:� OThe phylogenetic pattern of COG0760 is ----yQVcEB-HUJ--ol--XNumber of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Feb 27 12:22:35 MST 2001","Fri Dec 26 14:14:35 2003","Fri Dec 26 14:14:35 2003","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 27 12:11:15 MST 2001","-43% similar to PDB:1M5Y Crystallographic Structure of SurA, a Molecular Chaperone that Facilitates Outer Membrane Porin Folding (E_value = 3.3E_10);","","","Residues 181 to 276 (E-value = 1.5e-12) place PG0380 in the Rotamase family which is described as PPIC-type PPIASE domain (PF00639)","Tue Feb 27 12:11:15 MST 2001","34540238","","","","","","1","","","PG0415" "PG0381","457400","455226","2175","ATGGACATTGTTCTGGCCGAAAAATTACAGCAGTATTTTGGATTTGACCGATTCAAAGGCAATCAGGAGGCTATCATAAGAAATGTATTAGCCGAACGAAACACTTTTGTGCTGATGCCTACGGGAGGTGGGAAATCCCTATGCTACCAATTGCCGGCCATGCTCATGACCGGCACGACCATCGTAGTCTCTCCTCTTATCGCTCTGATGAAGAATCAGGTGGATGCCATGCGTAGCTTCAGTGCCAAGGATGGGGTCGCTCACTTTATGAATTCTTCTTTGAATAAGACACAGCTCGAACGTGTTAAGAATGATGTACGCGATGGACTTACCAAACTGTTGTACGTCGCTCCCGAATCATTGACAAAAGAAGAAAACATTGCTTTTCTGCGTGAAATAGATATTTCGTTTTACGCTATAGACGAAGCCCATTGCATATCGGAATGGGGGCATGACTTCAGGCCCGAATACAGACGGATTCGTCCTATCATCAATGAGATAGGGCCCCGATCGATCATCGCTTTGACAGCCACGGCTACCCCGAAAGTGCAGCATGATATTCAAAAGAATCTTGGGATGATGGATGCCGATGTATTCAAATCGTCTTTCAATCGTCCCAATCTTTTTTATCATATACGTCCTAAAACACAGGACGTAGATCGTGACGTAGTCAAATACATCCTATCCCAGCCGGGAAAGAGCGGTATTGTCTATTGCATGAGTCGAAATAAAGTAACTACTTTTGCCCAGGTTTTGCAGGCCAATGGGATCAAAGCCCTTCCCTATCATGCGGGACTTGACGCCGGAGAGCGAGCGAGCAATCAGGATGCTTTTCTGAATGAAGAGATAAGCGTGATCGTTGCCACCATTGCTTTTGGGATGGGTATTGACAAGCCGGATGTTCGCTACGTCATTCACTATGATATGCCCAAAAGCTTGGAAGGGTATTATCAGGAAACGGGGCGTGCCGGTCGAGATGGAGGAGAAGGCGAATGTATTGCATTCTATCGTCCCAAAGACCTGCAACGTTTAGAGAAATTCATGCAAGGCAAGCCCATATCCGAGCAGGAAATCGGGCGTCAGCTATTGGCCGAGACTGCAGCATTTGCGGAGAGCAGAGTGTGTAGGCGCAAGCTGCTTCTCCACTATTTTGGAGAGGACTATACTCAGGAAAACTGCGGTGCATGTGATAATTGTACGAGTACGTATAAGCAAGTGGAAGCAAAGGAACTATTGTTAAACGTTTTGGAAACAGTTTCTGCTTTGAAGGAACAGTTCAAAACGGAGTATGTCGTTAATGTATTGATGGGCGAATTGACTCCTGATATAGAGTCATTCGGACATCAGGATTTAGAGGTCTTCGGTATCGGAAGCGATGAAACCGAGACAACATGGACAGCCGTCATCAGACAAGCACTGCTTTCCGGCTATTTGAGTCGGGACATCGAAAATTATGGTCTGCTGAAAGTGACAGCCAAAGGCAAGAAGTTTGCCCTCAAACCTGTTTCTTTCAAGATCGTCGATGAGAACGAAGAGGACGAGGATGACGATGCTCCTAAGGTGGGAGGGCGAGGTTCCGGTGGGGCCATGGATCCGGTCCTGTTCGCCATGATGAAAGACCTCAGAAAGAAATTGGGTGCATCTCTCAAGTTGCCTCCCTACGTTATCTTCCAAGATCCCTCATTGGAGGCTATGGCTACGTTCTATCCCGTTACGATCGAAGAGCTGCAGAATATTCCCGGCGTGGGTGTCGGCAAGGCTACTCGCTATGGGAAAGAATTCCTCGATCTGATCCGTCGTCACGTAGAGGAAAACGAGATCGAACGTCCGGAGGATATGCGTGTACGTACACTCGCCAACAAATCGAAGATGAAAGTCTCCATCGTTCAGCAAATCGATCGTAAAGTAGCTTTGGACGATATAGCGGTGAGCCATGGATTGGATTTTCCGGAATTGCTGTCAGAAGTCGAGACGATAGTCTACTCCGGTACTCGAATCAATATCGACTACTTCATCAACGAGGTCATGGACGAGGATCATTTGGAAGATATATTCGAGTATTTCAAAGAATCCACGACAGACTCTTTGGAGGAGGCTATGCAAGAACTCGGTAAGGACTATTCGGAGGAAGAGATTCGTTTGGTACGGATCAAGTTCTTATCCGAAATGGCAAAC","5.00","-23.38","81913","MDIVLAEKLQQYFGFDRFKGNQEAIIRNVLAERNTFVLMPTGGGKSLCYQLPAMLMTGTTIVVSPLIALMKNQVDAMRSFSAKDGVAHFMNSSLNKTQLERVKNDVRDGLTKLLYVAPESLTKEENIAFLREIDISFYAIDEAHCISEWGHDFRPEYRRIRPIINEIGPRSIIALTATATPKVQHDIQKNLGMMDADVFKSSFNRPNLFYHIRPKTQDVDRDVVKYILSQPGKSGIVYCMSRNKVTTFAQVLQANGIKALPYHAGLDAGERASNQDAFLNEEISVIVATIAFGMGIDKPDVRYVIHYDMPKSLEGYYQETGRAGRDGGEGECIAFYRPKDLQRLEKFMQGKPISEQEIGRQLLAETAAFAESRVCRRKLLLHYFGEDYTQENCGACDNCTSTYKQVEAKELLLNVLETVSALKEQFKTEYVVNVLMGELTPDIESFGHQDLEVFGIGSDETETTWTAVIRQALLSGYLSRDIENYGLLKVTAKGKKFALKPVSFKIVDENEEDEDDDAPKVGGRGSGGAMDPVLFAMMKDLRKKLGASLKLPPYVIFQDPSLEAMATFYPVTIEELQNIPGVGVGKATRYGKEFLDLIRRHVEENEIERPEDMRVRTLANKSKMKVSIVQQIDRKVALDDIAVSHGLDFPELLSEVETIVYSGTRINIDYFINEVMDEDHLEDIFEYFKESTTDSLEEAMQELGKDYSEEEIRLVRIKFLSEMAN","457424 455226","TIGR ID: PG0416","ATP-dependent DNA helicase","Cytoplasm","Residues 9-608 share 41% identity with gb|AAG59018.1|AE005613_11 (AE005613), an ATP-dependent DNA helicase in Escherichia coli O157:H7 and also with gb|AAF33434.1| (AF233324) S. typhimurium DNA-dependent ATPase DNA helicase (RECQ). Residues 9-602 share 39% identity with gb|AAF93372.1| (AE004110), an ATP-dependent DNA helicase RecQ in Vibrio cholerae.This region also shares identity with a number of additional bacterial ATP-dependent DNA helicases.This sequence is similar to BT3844.","
InterPro
IPR001650
Domain
Helicase, C-terminal
PF00271\"[251-327]THelicase_C
SM00490\"[246-327]THELICc
PS51194\"[222-366]THELICASE_CTER
InterPro
IPR002121
Domain
HRDC
PF00570\"[528-608]THRDC
PS50967\"[528-608]THRDC
InterPro
IPR004589
Family
ATP-dependent DNA helicase RecQ
PTHR13710\"[1-626]TRecQ
TIGR00614\"[7-460]TrecQ_fam
InterPro
IPR006293
Family
ATP-requiring DNA helicase RecQ
TIGR01389\"[5-601]TrecQ
InterPro
IPR010997
Domain
HRDC-like
SSF47819\"[535-604]THRDC_like
InterPro
IPR011545
Domain
DEAD/DEAH box helicase, N-terminal
PF00270\"[19-187]TDEAD
InterPro
IPR014001
Domain
DEAD-like helicases, N-terminal
SM00487\"[14-213]TDEXDc
InterPro
IPR014021
Domain
Helicase superfamily 1 and 2 ATP-binding
PS51192\"[26-197]THELICASE_ATP_BIND_1
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[14-192]T\"[203-367]TG3DSA:3.40.50.300
PTHR13710:SF11\"[1-626]TPTHR13710:SF11


","BeTs to 5 clades of COG0514COG name: Superfamily II DNA helicases, RecQ familyFunctional Class: LThe phylogenetic pattern of COG0514 is ----y--ceB-h-----l---Number of proteins in this genome belonging to this COG is 2","***** PF00570 (HRDC domain) with a combined E-value of 7.5e-29. PF00570A 36-50 PF00570B 288-318***** IPB000629 (ATP-dependent helicase, DEAD-box subfamily) with a combined E-value of 7.2e-17. IPB000629A 14-52 IPB000629E 285-335***** BP01310 (HELICASE PROTEIN ATP-BINDI) with a combined E-value of 2.4e-07. BP01310A 257-303 BP01310B 314-327***** IPB002464 (ATP-dependent helicase, DEAH-box subfamily) with a combined E-value of 7.2e-06. IPB002464C 134-147 IPB002464D 289-299 IPB002464F 318-335","Residues 531-599 are 43% similar to a (RECQ DNA HELICASE DNA-BINDING ATP-BINDING HOMOLOG) protein domain (PD013646) which is seen in RECQ_ECOLI.Residues 356-491 are 37% similar to a (HELICASE ATP-BINDING DNA PROTEIN) protein domain (PD007610) which is seen in RECQ_ECOLI.Residues 223-341 are 52% similar to a (HELICASE PROTEIN POLYPROTEIN ATP-BINDING RNA RNA-BINDING) protein domain (PD000033) which is seen in RECQ_ECOLI.Residues 104-212 are 47% similar to a (HELICASE PROTEIN ATP-BINDING DNA ATP-DEPENDENT SYNDROME) protein domain (PD003883) which is seen in O34748_BACSU.Residues 9-79 are 59% similar to a (HELICASE DNA ATP-BINDING PROTEIN) protein domain (PD100086) which is seen in RECQ_ECOLI.","","Thu Jun 14 10:48:14 MDT 2001","","Thu Jun 14 10:48:14 MDT 2001","Thu Jun 14 10:48:14 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 10:48:14 MDT 2001","Thu Jun 14 10:48:14 MDT 2001","","","Tue Feb 27 12:20:52 MST 2001","Fri Dec 26 14:12:57 2003","Fri Mar 9 14:00:55 MST 2001","Wed Jun 20 13:43:57 MDT 2001","Wed Jun 20 13:43:57 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 7-346 share 42% identity with PG1597.Residues 371-443 share 22% identity with PG1835,a DEAD BOX-related helicase (ATP-dependent helicase) and 22% identity with PG0074, another DEAD BOX-related helicase.","Wed Jun 20 13:43:57 MDT 2001","Tue Feb 27 12:20:52 MST 2001","-63% similar to PDB:1OYW Structure of the RecQ Catalytic Core (E_value = 3.0E_112);-63% similar to PDB:1OYY Structure of the RecQ Catalytic Core bound to ATP-gamma-S (E_value = 3.0E_112);-42% similar to PDB:1HV8 CRYSTAL STRUCTURE OF A DEAD BOX PROTEIN FROM THE HYPERTHERMOPHILE METHANOCOCCUS JANNASCHII (E_value = 3.7E_14);-62% similar to PDB:1WUD E. coli RecQ HRDC domain (E_value = 7.0E_13);-38% similar to PDB:2DB3 Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa (E_value = 3.9E_11);","","","Residues 8 to 213 (E-value = 6.8e-26) place PG0381 in the DEAD family which is described as DEAD/DEAH box helicase (PF00270)Residues 251 to 327 (E-value = 3e-29) place PG0381 in the Helicase_C family which is described as Helicase conserved C-terminal domain (PF00271)Residues 528 to 608 (E-value = 8.6e-14) place PG0381 in the HRDC family which is described as HRDC domain (PF00570)","Fri Dec 26 14:12:57 2003","34540239","","","","","","1","","","PG0416" "PG0382","458714","457482","1233","ATGGCAAAGAAAAAGGACGAAGAATACTGTAGTTTTTGTGGCATGCCGAGAACGCAGGTAAACCTGATGCTCGAAGGAGTCCATGCTCATATCTGCGATGAATGTGCTCTCCGTGCAGGAGAGGTGGTTCGAGAAGCATTGCAAAAATTCAAATCGGAAGAGACGAACAATCTGAAGAGAGAGGACTTGCCTCGGCCTATAGAGATCAAGGAATTTCTCGATTCGTATGTTATCGGGCAGGATGATGCCAAACGTTTTCTTTCTGTCGCTGTATACAATCATTACAAACGATTGCTCCAGCAAGAGGACAGCGATGGCGTAGAGATCGAGAAAAGCAATATTATTATGGTCGGTCCCACGGGAACCGGCAAGACACTCTTGGCTCGTACGATAGCCAAAATGCTCCATGTTCCTTTCGCCGTAGTCGACGCTACGGTACTGACCGAAGCCGGCTATGTGGGGGAAGACATTGAGAGTATTCTCACCAGACTTTTGCAGGCCGCAGACTACGATGTCAAACAGGCCGAGAGAGGGATTGTCTTTATCGATGAGATAGACAAGATAGCCCGTAAGAGTGATAATCCTTCGATTACGCGTGATGTCAGTGGCGAAGGAGTACAGCAAGGTTTGCTCAAACTTCTGGAAGGTTCTATCGTAAATGTTCCTCCTCAAGGCGGTCGCAAACATCCGGAGCAGAAGATGATTCCGGTGGACACGAGGCATATTCTCTTCGTTTGTGCCGGAGCTTTCGACGGCATAGAGAAGAAAATTGCTCAGCGACTCAATACTCGTGTTGTGGGTTATACTGCCGGATTGCAAAACAGGCATATCGATCGTGAGAATATGCTTCGCTATATTCGTCCGCAGGATTTGAAATCTTTTGGGCTGATTCCTGAAATCATCGGTCGTTTGCCTATTTTGACCCATTTGGAGCCGTTAGATCGGGATGCCCTTAGAAACATCATGACGGAGCCCAAGAATGCCATTACCAAGCAATACGAAAAACTGTTTGCCATGGATGGCATCAAGGTTTCTTTTACATCCGATATGCTTGATTTCGTCGTTGATAAAGCTATCGAATTCAAACTGGGTGCACGCGGACTACGCTCCATCGTAGAGACGATCATGATGGATGCGATGTTCACGATGCCATCAGGTAAGAAGAAGACTTTGGTCGTAGACAAAGCTTATGCAGAAGCTCATTTGAATATTGACGATTTGCTACAAGATCAA","6.30","-4.03","46201","MAKKKDEEYCSFCGMPRTQVNLMLEGVHAHICDECALRAGEVVREALQKFKSEETNNLKREDLPRPIEIKEFLDSYVIGQDDAKRFLSVAVYNHYKRLLQQEDSDGVEIEKSNIIMVGPTGTGKTLLARTIAKMLHVPFAVVDATVLTEAGYVGEDIESILTRLLQAADYDVKQAERGIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPEQKMIPVDTRHILFVCAGAFDGIEKKIAQRLNTRVVGYTAGLQNRHIDRENMLRYIRPQDLKSFGLIPEIIGRLPILTHLEPLDRDALRNIMTEPKNAITKQYEKLFAMDGIKVSFTSDMLDFVVDKAIEFKLGARGLRSIVETIMMDAMFTMPSGKKKTLVVDKAYAEAHLNIDDLLQDQ","458714 457482 [Shorter 500 927 99]","TIGR ID: PG0417","ATP-dependent ClpX-related protease","Cytoplasm","Numerous significant hits to ATP-dependent Clp proteinase (protease) ATP-binding subunit proteins in gapped BLAST; e.g. residues 9-393 are 54% similar to gb|AAG05191.1|AE004606_5 ATP-dependent Clp protease ATP-binding subunit ClpX of Pseudomonas aeruginosa, residues 1-385 are 56% similar to gb|AAC07316.1 ATP-dependent protease ATPase subunit clpX of Aquifex aeolicus, 4-385 are 55% similar to dbj|BAB06771.1| ATP-dependent Clp protease ATP-binding subunit (class III heat-shock protein) of Bacillus halodurans. This sequence is similar to BT3843.","
InterPro
IPR003593
Domain
AAA+ ATPase, core
SM00382\"[110-271]TAAA
InterPro
IPR004487
Family
ClpX, ATPase regulatory subunit
PTHR11262:SF4\"[4-399]TClpX
TIGR00382\"[1-408]TclpX
InterPro
IPR010603
Domain
Zinc finger, C4-type
PF06689\"[7-46]Tzf-C4_ClpX
InterPro
IPR013093
Domain
ATPase AAA-2
PF07724\"[109-307]TAAA_2
noIPR
unintegrated
unintegrated
G3DSA:1.10.8.60\"[312-403]TG3DSA:1.10.8.60
G3DSA:3.40.50.300\"[55-311]TG3DSA:3.40.50.300
PTHR11262\"[4-399]TPTHR11262
SSF52540\"[59-403]TSSF52540
SSF57716\"[7-44]TSSF57716


","BeTs to 12 clades of COG1219COG name: ATP-dependent protease Clp, ATPase subunit ClpXFunctional Class: OThe phylogenetic pattern of COG1219 is ----yqvcebrhuj--olinxNumber of proteins in this genome belonging to this COG is 1","***** IPB001939 (AAA-protein (ATPases associated with various cellular activities)) with a combined E-value of 3.8e-16. IPB001939A 74-94 IPB001939B 111-132 IPB001939C 159-192","Residues 156-250 are 43% similar to a (HEAT SHOCK HSLU PROTEIN CHAPERONE ATP-BINDING INDUCED) protein domain (PD003010) which is seen in Q9ZDK8_RICPR.Residues 64-380 are 58% similar to a (PROTEIN ATP-BINDING PROTEASE SUBUNIT REGULATORY HOMOLOG) protein domain (PD000092) which is seen in CLPX_BACSU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Mar 22 11:43:05 MST 2000","Fri Dec 26 14:11:17 2003","Wed Mar 14 16:35:50 MST 2001","Wed Mar 14 16:35:50 MST 2001","Wed Mar 14 16:35:50 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 75-190 show 34% similarity to PG0041 putative ATPase/cell division protein.","Wed Mar 14 16:35:50 MST 2001","Wed Mar 14 16:35:50 MST 2001","-74% similar to PDB:1UM8 Crystal structure of helicobacter pylori ClpX (E_value = 3.0E_100);-53% similar to PDB:1OFH ASYMMETRIC COMPLEX BETWEEN HSLV AND I-DOMAIN DELETED HSLU (H. INFLUENZAE) (E_value = 1.0E_47);-53% similar to PDB:1OFI ASYMMETRIC COMPLEX BETWEEN HSLV AND I-DOMAIN DELETED HSLU (H. INFLUENZAE) (E_value = 1.0E_47);-48% similar to PDB:1G3I CRYSTAL STRUCTURE OF THE HSLUV PROTEASE-CHAPERONE COMPLEX (E_value = 1.9E_22);-48% similar to PDB:1G41 CRYSTAL STRUCTURE OF HSLU HAEMOPHILUS INFLUENZAE (E_value = 1.9E_22);","","","Residues 10 to 46 (E-value = 2.4e-08) place PG0382 in the zf-C4_ClpX family which is described as ClpX C4-type zinc finger (PF06689)Residues 113 to 319 (E-value = 2.8e-27) place PG0382 in the AAA family which is described as ATPase family associated with various cellular activities (AAA) (PF00004)","Fri Dec 26 14:11:17 2003","34540240","","","","","","1","","","PG0417" "PG0384","459419","458754","666","ATGAACGAATTCAAAAAATACGCGACCCGACATATCGGGTTGAATGCACAGGCCTTGGACGACTATACCAGAATCCAAAGCAGCTACATCTCTCCGACCATTATCGAAGAACGCCAGTTGAACGTTGCACAAATGGATGTGTTCTCACGTCTAATGATGGATCGGATCATCTTCCTTGGCACTCAGATCGACGATTACACGGCCAATGTCATTCAAGCACAGCTTCTTTATCTTGATAGCGCCGACCCCGGTAAAGATATTTCCATCTATCTGAATTCACCCGGCGGATCTGTTTATGCCGGTTATGGCATATACGATACGATGCAGTATATAGGGTGCGATGTGGCCACTATCTGTACGGGCATGGCTGCGTCTATGGCATCAGTGCTGCTCGTAGCAGGAACGAAAGGCAAACGCTTTGCTTTGCCTCATTCCCGCGTGATGATACATCAGCCGCTTGGTGGTATGCAGGGGCAGGCCAGCGATTTGGAGATCGCAGCTCGCGAGATTCTGCGCGTCAAGAAAGAGCTTTACACGATTATCTCTTCTCACAGTGGAAAGCCCGTCGAGCAGGTCGAAAAAGATAGTGATCGGGACTATTGGATGACAGCCCCCGAAGCATTGGAGTACGGGATGATAGATAAAATCCTCGAAAAGAATCGAAAG","5.70","-3.13","24790","MNEFKKYATRHIGLNAQALDDYTRIQSSYISPTIIEERQLNVAQMDVFSRLMMDRIIFLGTQIDDYTANVIQAQLLYLDSADPGKDISIYLNSPGGSVYAGYGIYDTMQYIGCDVATICTGMAASMASVLLVAGTKGKRFALPHSRVMIHQPLGGMQGQASDLEIAAREILRVKKELYTIISSHSGKPVEQVEKDSDRDYWMTAPEALEYGMIDKILEKNRK","459437 458754 [Shorter 500 282 99]","The ATP-binding subunit of the CLP protease is PG0009.TIGR ID: PG0418","ATP-dependent clp protease proteolytic subunit (endopeptidase CLP)","Cytoplasm","Numerous significant hits to ATP-dependent Clp protease, proteolytic subunit proteins in gapped BLAST; e.g. residues 24-217 are 58% similar to gb|AAD35777.1|AE001741_10 ATP-dependent Clp protease, proteolytic subunit of Thermotoga maritima, residues 32-216 are 61% similar to gb|AAD31002.1|AF127082_1 ATP-dependent protease proteolytic subunit ClpP of Myxococcus xanthus, residues 32-221 are 59% similar to dbj|BAB07283.1| ATP-dependent Clp protease proteolytic subunit of Bacillus halodurans.","
InterPro
IPR001907
Family
Peptidase S14, ClpP
PR00127\"[46-61]T\"[86-106]T\"[117-134]T\"[138-157]T\"[195-214]TCLPPROTEASEP
PTHR10381\"[83-221]TPept_S14_ClpP
PF00574\"[41-220]TCLP_protease
PS00382\"[139-152]TCLP_PROTEASE_HIS
noIPR
unintegrated
unintegrated
G3DSA:3.90.226.10\"[29-221]TG3DSA:3.90.226.10
SSF52096\"[39-221]TSSF52096


","BeTs to 11 clades of COG0740COG name: Protease subunits of ATP-dependent proteases, ClpP familyFunctional Class: OThe phylogenetic pattern of COG0740 is -----qvCebRhuj--OLINxNumber of proteins in this genome belonging to this COG is 1","***** IPB001907 (Clp protease) with a combined E-value of 9.1e-80. IPB001907A 46-85 IPB001907B 116-155 IPB001907C 173-216","Residues 32-218 are 57% similar to a (PROTEASE CLP HYDROLASE ENDOPEPTIDASE SERINE) protein domain (PD001650) which is seen in CLPP_AQUAE.","","Thu Jun 14 10:48:31 MDT 2001","","Thu Jun 14 10:48:31 MDT 2001","Thu Jun 14 10:48:31 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 10:48:31 MDT 2001","Thu Jun 14 10:48:31 MDT 2001","","Tue Mar 26 11:10:48 2002","Tue Apr 17 16:48:20 MDT 2001","Wed Jun 20 13:47:20 MDT 2001","Tue Mar 26 11:10:48 2002","Wed Jun 20 13:47:20 MDT 2001","Wed Jun 20 13:47:20 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 27 12:58:38 MST 2001","-79% similar to PDB:1YG8 The structure of a V6A variant of ClpP. (E_value = 7.2E_59);-78% similar to PDB:1TYF THE STRUCTURE OF CLPP AT 2.3 ANGSTROM RESOLUTION SUGGESTS A MODEL FOR ATP-DEPENDENT PROTEOLYSIS (E_value = 1.6E_58);-78% similar to PDB:1YG6 ClpP (E_value = 1.6E_58);-78% similar to PDB:2FZS Crystal structure of E. coli ClpP with a Peptide Chloromethyl Ketone Covalently Bound at the Active Site (E_value = 1.6E_58);-75% similar to PDB:2C8T THE 3.0 A RESOLUTION STRUCTURE OF CASEINOLYTIC CLP PROTEASE 1 FROM MYCOBACTERIUM TUBERCULOSIS (E_value = 1.0E_52);","","","Residues 41 to 220 (E-value = 2.7e-115) place PG0384 in the CLP_protease family which is described as Clp protease (PF00574)","Wed Jun 20 13:47:20 MDT 2001","34540241","","","","","","1","","","PG0418" "PG0385","460697","459795","903","TTGTCCGTCTTACTGATAGAACGACTAACAAGAAACCAATCAATCATGTGGACAAAAAGACTCCTTTTCCTCGTGCTCGCGGCAGCAAGTATCAGTTTTGCATCTGCCCAAATAATCTCATGGAAACGCATCAAGGGTAACGGTAAAGTACAGACAGAAGAGCGGCGTATAGGTCAATTCGATCGCCTGATCGTAAAGGGCAGCATGGATGTGAATATACAGCAAAGCACGTCGGGACAAGCATTGACGATAGAGGCCGAATCCAACATCCTCCCTCTGGTCGAGACAGTAGTAGAAGGCGGTACTCTGGTAATCAAAATGAAGCCATCGCTATCTATCTCTATCAATAAAGGTGTCCGGATCAGGATAACTACTCCCCAACTGTCAGAAGCAGAGCTACACGGAAGCGGTGATATTACATTTGCCGGAAAATTCCGTCTGCGATCTCTTAGGATCGAACTCTCCGGAAGCGGTGACATCACTTTTGCCAATGCCACGATAGCCAATGATCTGAACGTCAGCCTTAGAGGTAGTGGCGACATACGGGGCAATATCCTTACCGGCAGGAATGCAACTCTCTCGCTGGCCGGTTCGGGCGACATAGACCTTTCGCTCGGTCATCCTCAGAGAGTGGAAGCCGGTATCAGCGGAAGCGGAGATATAAAGATAAAGGGACAAACAGCCTTTGCCGCGCTGAAATGCAGCGGAAGCGGAGACCTCGAATGCCGTAACCTGTCGGCCCAACAAGCCGACGTAAGGATCAGTGGCAGCGGAGATGGCAAGCTGGCTGTTACCGAAAAGCTGGATATCAACCTATCCGGATCAGCCGGCTTTGTCTGCTATGGCAAACCTGTCATCGGTACACACAAAGTCAGCCGTTCTTCCTCTTTCCGAATGGTTCCT","10.50","10.58","31936","LSVLLIERLTRNQSIMWTKRLLFLVLAAASISFASAQIISWKRIKGNGKVQTEERRIGQFDRLIVKGSMDVNIQQSTSGQALTIEAESNILPLVETVVEGGTLVIKMKPSLSISINKGVRIRITTPQLSEAELHGSGDITFAGKFRLRSLRIELSGSGDITFANATIANDLNVSLRGSGDIRGNILTGRNATLSLAGSGDIDLSLGHPQRVEAGISGSGDIKIKGQTAFAALKCSGSGDLECRNLSAQQADVRISGSGDGKLAVTEKLDINLSGSAGFVCYGKPVIGTHKVSRSSSFRMVP","460697 459795","TIGR ID: PG0419","conserved hypothetical protein","Outer membrane, Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
noIPR
unintegrated
unintegrated
signalp\"[1-36]?signal-peptide
tmhmm\"[21-41]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Feb 27 12:25:34 MST 2001","","Tue Feb 27 12:25:34 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 16 to 301 share 42% identity with PG0386.Residues 24 to 258 share 28% identity with PG0898.","Tue Feb 27 12:25:34 MST 2001","Tue Feb 27 12:25:34 MST 2001","-54% similar to PDB:2JG5 CRYSTAL STRUCTURE OF A PUTATIVE PHOSPHOFRUCTOKINASE FROM STAPHYLOCOCCUS AUREUS (E_value = );-50% similar to PDB:1SVX Crystal structure of a designed selected Ankyrin Repeat protein in complex with the Maltose Binding Protein (E_value = );-48% similar to PDB:2BKG CRYSTAL STRUCTURE OF E3_19 AN DESIGNED ANKYRIN REPEAT PROTEIN (E_value = );-48% similar to PDB:1MJ0 SANK E3_5: an artificial Ankyrin repeat protein (E_value = );-52% similar to PDB:1RWR Crystal structure of filamentous hemagglutinin secretion domain (E_value = );","","","No significant hits to the Pfam 11.0 database","Tue Feb 27 12:25:34 MST 2001","34540242","","","","","","1","","","PG0419" "PG0386","461783","460929","855","ATGAAGACAAAAAGACTTTTTCTACTGGCGATCATTGCACTATGCAGCATTCATGCATCAATGGGGCTTGACCTCCAAAAACGAGTAAAAGGGAATGAGCAATTCGCCTCTGAAGAGCGTTTGGCAGAGCCTTTCAACAGCCTTTCGGCATCAGGCAGCATTGATATTCAGATCGAATACTCCCCCATACAGGCACCCCTCCGAATAGAAGCCGAGTCGAACATCATACCACTAATCAATACAACGGTAAAGAAAGGTGTCCTGAACATCGAATTCGAAAAAAAACGTTCCATATCGCCTAATGCTGCAGTGCGAGTTATCGTCAGTGTGCCGGAAATACAATCAGTCACACTGGGCGGTAGTGGCAATTTGATTTTCGGTTCCGGTTTCAACCAGCCCACCCTGAAAGTAACCATTAACGGTAGCGGCAGTATAAACTTCATCGATACAAAAGCGGAACAACTGGACATCGTAGTCAATGGTAGCGGTGACCTTCGCGGCAGCATTTTTGCTCATAAGGATATACGCATGAACCTGAAAGGATCCGGCAATATCACTCTTTCCATAGACGAAACCAAGACGATTCAAGCTAATATGAAAGGAAGTGGAGGTATTAAGCTGACAGGAAAAGCTTCGAACACGATACTGAGAAGTTCGGGAAGCGGGATGTTCGACTGCCAAAGCCTGACGACTGACCATGCCGACATAAAAATGAGCGGAAGCGGAGGCGGCCGCCTCAGTGTAACGAAGAAAATCAGCGTCAATCTATCAGGATCCGCCGGTTTCACCTGCCATGGAAAGGCTAAAATAGGTTCTTATAAAATAGGACGCTCTTCTTCATTCAGTATGCAACCG","10.40","11.82","30151","MKTKRLFLLAIIALCSIHASMGLDLQKRVKGNEQFASEERLAEPFNSLSASGSIDIQIEYSPIQAPLRIEAESNIIPLINTTVKKGVLNIEFEKKRSISPNAAVRVIVSVPEIQSVTLGGSGNLIFGSGFNQPTLKVTINGSGSINFIDTKAEQLDIVVNGSGDLRGSIFAHKDIRMNLKGSGNITLSIDETKTIQANMKGSGGIKLTGKASNTILRSSGSGMFDCQSLTTDHADIKMSGSGGGRLSVTKKISVNLSGSAGFTCHGKAKIGSYKIGRSSSFSMQP","461783 460929","TIGR ID: PG0421. Reported by Chen et al., 2004, to be highly divergent in ATCC 33277.","conserved hypothetical protein","Outer membrane, Cytoplasm, Extracellular","No significant hit found in gapped BLAST with E value less than e-04.","
noIPR
unintegrated
unintegrated
signalp\"[1-22]?signal-peptide
tmhmm\"[5-23]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Tue Feb 22 13:51:09 2005","Tue Feb 27 12:27:55 MST 2001","","Tue Feb 27 12:27:55 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1 to 285 share 42% identity with PG0385.","Tue Feb 27 12:27:55 MST 2001","Tue Feb 27 12:27:55 MST 2001","-42% similar to PDB:1LJ1 Crystal structure of Q363F/R402A mutant flavocytochrome c3 (E_value = );-45% similar to PDB:2FS3 Bacteriophage HK97 K169Y Head I (E_value = );-53% similar to PDB:1ARP CRYSTAL STRUCTURE OF THE FUNGAL PEROXIDASE FROM ARTHROMYCES RAMOSUS AT 1.9 ANGSTROMS RESOLUTION: STRUCTURAL COMPARISONS WITH THE LIGNIN AND CYTOCHROME C PEROXIDASES (E_value = );-53% similar to PDB:1ARU CRYSTAL STRUCTURES OF CYANIDE-AND TRIIODIDE-BOUND FORMS OF ARTHROMYCES RAMOSUS PEROXIDASE AT DIFFERENT PH VALUES. PERTURBATIONS OF ACTIVE SITE RESIDUES AND THEIR IMPLICATION IN ENZYME CATALYSIS (E_value = );-53% similar to PDB:1ARV CRYSTAL STRUCTURES OF CYANIDE-AND TRIIODIDE-BOUND FORMS OF ARTHROMYCES RAMOSUS PEROXIDASE AT DIFFERENT PH VALUES. PERTURBATIONS OF ACTIVE SITE RESIDUES AND THEIR IMPLICATION IN ENZYME CATALYSIS (E_value = );","","","No significant hits to the Pfam 11.0 database","Tue Feb 27 12:27:55 MST 2001","34540243","","Chen T, Hosogi Y, Nishikawa K, Abbey K, Fleischmann RD, Walling J, Duncan MJ.Comparative whole-genome analysis of virulent and avirulent strains of Porphyromonas gingivalis.J Bacteriol. 2004 Aug;186(16):5473-9.PMID: 15292149","","Tue Feb 22 13:51:09 2005","","1","","","PG0421" "PG0387","462392","462024","369","ATGTTCTCCGAGAAGTTCTTTACAGCATCTTTCGGGCCGGACGATGAACAGCCGGCCATCAAGGCAGCGGCAAACAATGCCGCTCCGATTTTCCATCTTTTCATATTAGAATTTTTACTTTTTAAGTATCAGTTGCTTAGCAAAGATAGCGAATATCCCTATCTCCTCATTCGTGCAGGTGACAATAATCGTCCGAAAAAGGCCGAAAGGAGAGACAAGGCCAGTAAAATGTGGAGCCGGAATCAGGAGAAACATGGTTCCAAAAAATCTGAAAAATCGAACCAAAACAAAAACTTTTACGTTCGGGAATTTTTTTCTTTTGGCGCGAGTTCCAAAAAATTCCCGAACCATGTTTTTAGGGATGTGTTT","10.60","8.71","14395","MFSEKFFTASFGPDDEQPAIKAAANNAAPIFHLFILEFLLFKYQLLSKDSEYPYLLIRAGDNNRPKKAERRDKASKMWSRNQEKHGSKKSEKSNQNKNFYVREFFSFGASSKKFPNHVFRDVF","462485 462024 [Bad Olap 505 197 0]","TIGR ID: PG0422","hypothetical protein","Periplasm","No hit found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 10:48:51 MDT 2001","","Thu Jun 14 10:48:51 MDT 2001","Thu Jun 14 10:48:51 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 10:48:51 MDT 2001","Thu Jun 14 10:48:51 MDT 2001","","","Thu Feb 15 16:11:06 MST 2001","","Thu Feb 15 16:11:06 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 15 16:11:06 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Jun 20 13:48:48 MDT 2001","34540244","","","","","","1","","","PG0422" "PG0388","462391","462630","240","ATGGCCAAACAGAAATATGAAGAGGCTAAGAAGTATTGCACGGAACGCACCAATAAGCTTGTCGATCTGTATGGTGCTTTGGGCGGAGAGGCCAAACCAAACTACAAGTTTACCTTTATCAAGGATAGTATTGTGGAGAAGGAAGCTTGGGTCACCTATCTGGATTTCGAAGATGATACAACCACGGTTCATGTGGTGAATATCGACAACAAATGGCTTGTCGATGAAGCGATCGGGAAA","4.90","-2.82","9250","MAKQKYEEAKKYCTERTNKLVDLYGALGGEAKPNYKFTFIKDSIVEKEAWVTYLDFEDDTTTVHVVNIDNKWLVDEAIGK","462289 462630 [Shorter 504 197 99]","TIGR ID: PG0423","hypothetical protein","Outer membrane, Periplasm, Cytoplasm","This sequence corresponds to gi:34396557 in Genbank.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 10:49:09 MDT 2001","","Thu Jun 14 10:49:09 MDT 2001","Thu Jun 14 10:49:09 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 10:49:09 MDT 2001","Thu Jun 14 10:49:09 MDT 2001","","","Thu Feb 15 16:12:30 MST 2001","Wed Mar 2 10:53:13 2005","Thu Feb 15 16:12:30 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 15 16:12:30 MST 2001","-62% similar to PDB:1G5Z CRYSTAL STRUCTURE OF LYME DISEASE ANTIGEN OUTER SURFACE PROTEIN C (OSPC) FROM BORRELIA BURGDORFERI STRAIN N40 (E_value = );","","","No significant hits to the Pfam 11.0 database","Thu Jun 14 10:49:09 MDT 2001","34540245","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Wed Mar 2 10:53:13 2005","","1","","","PG0423" "PG0389","462608","463270","663","TTGTCGATGAAGCGATCGGGAAATAAGCATCCCTTCGGATTTACAGTTTTGCGTCTTAATGCATTCGTTACCCGGTGCATTCTCTCCCTTTCTTTTCTGCTCTGTCTGAGTGCATGCTCGCAGGGCAGGAAAGAAAGGTTTTTTGTACCTGCCTTCCCCGAAGGAACGGAATTGCGCGATGGCGACCTCATCTGTCGCTTAGGCACTTCGTGGTATTCCGGTCTTTTCAGGAAAAAGGCCTCTTCGGCACAAGAATATAGCCATATCGGCATCGTTCTTTATGCCGGTACGGATAGTTGCTCGGTAGTCCATACCGAAGAAGATCCGAGCAGTGGACATGGAGGAGTCGCCTTGGAATCCCTTTCGTCATTCCTTGCACATTCGCGGCGTGCAGGTATCTATCGTCTCCATCTTCCTGATTCCGTCCTGTCGCACTTTGTCAGAGCTGCTCTCGACTATCGCGAACGTCAAGTTCCTTTCGATTTTGCTTTTGATTCGGCCTCCGATGCCGAGCTGTATTGTACCGAGTTGGTTGCTGCCGCTTTGCTCAGAGCGGATTCTTTGCTACCGATCCGGCCGTCCATCTCAGTGGCAGGACGGCGTGTTTATTCTTTGGACGATCTTCTCCTGCTCCCCGGCACCAAGTGCATGGCTCTCGCGAAT","7.90","3.35","24253","LSMKRSGNKHPFGFTVLRLNAFVTRCILSLSFLLCLSACSQGRKERFFVPAFPEGTELRDGDLICRLGTSWYSGLFRKKASSAQEYSHIGIVLYAGTDSCSVVHTEEDPSSGHGGVALESLSSFLAHSRRAGIYRLHLPDSVLSHFVRAALDYRERQVPFDFAFDSASDAELYCTELVAAALLRADSLLPIRPSISVAGRRVYSLDDLLLLPGTKCMALAN","462608 463270","TIGR ID: PG0424","hypothetical protein","Cytoplasm, Inner membrane","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-42]?signal-peptide
tmhmm\"[21-39]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Feb 15 16:13:34 MST 2001","","Thu Feb 15 16:13:34 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 15 16:13:34 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540246","","","","","","1","","","PG0424" "PG0390","464079","463312","768","GTGGAAAGACTGTCGGTGCCAAGCGCATCGATGAATAAGGAGATCCCTGTACTCGTAGTGCTTCCGGATATAGCCTTGGCGAGCGAGGGCGGAGATTGCCCCGTGGTGTACCTGCTGCATGGCTATGGCGGAAATGCCGAAACATGGCTAACCGTTAAGCCGGACCTCCCGCAGATAGCAGATCAAAAAGGGATCATCTTCGTTTGTCCCGATGCACAGAATAGCTGGTATTGGGATAGCCCGGTCGATTCGGCCTTTCGCTACGAGACGTTTGTCGCTTCCGAGTTGGTCGGATATATAGACTTGCACTACAAAACCATTGCAGAGAGAAAGGGGCGAGCTATCGCCGGACTCAGCATGGGTGGGCACGGCGCCTTATGGATTGCCTTTCGGCATCAGGACGCGTTCGGAGCCTGTGGGAGCATGAGCGGTTGTGCGGATATTCGTCCCTTTCCGAACAACTGGGAGATAAGCAGACGGCTTGGCTCTTTGGCCGAGAATCCGAAGCTATGGGACGAGTACACTGTGATCAACAACCTCGACAGCTTGAGAGGGGCCGCACTTGCTATCCTAATAGATTGCGGAGTGGAGGATTTCTTTCTGGATGTCAACAAAGAGCTGCATGCCTCACTTCTGGCAAAGCAAATCGATCATGATTTTACCATCCGCCCGGGAGGGCACAACAGAGCTTATTGGCGTAATGCCATAGATTATCAGATCTTATTTTTCGAAAAATACTTCCGCCGGCACATCGAATCTCAGGTAGAA","5.20","-8.30","28676","VERLSVPSASMNKEIPVLVVLPDIALASEGGDCPVVYLLHGYGGNAETWLTVKPDLPQIADQKGIIFVCPDAQNSWYWDSPVDSAFRYETFVASELVGYIDLHYKTIAERKGRAIAGLSMGGHGALWIAFRHQDAFGACGSMSGCADIRPFPNNWEISRRLGSLAENPKLWDEYTVINNLDSLRGAALAILIDCGVEDFFLDVNKELHASLLAKQIDHDFTIRPGGHNRAYWRNAIDYQILFFEKYFRRHIESQVE","464079 463312","TIGR ID: PG0425","acetylesterase","Cytoplasm, Extracellular","Residues 2 to 249 share 41% identity with gb|AAG34997.1|AF306495_1 (AF306495), the esterase MesA in Pasteurella multocida.Residues 2 to 247 share 40% identity with gb|AAK03535.1| (AE006181), XynC in Pasteurella multocida.Residues 1 to 236 share24 % identity with pir||B37202, an acetylesterase (EC 3.1.1.6) (XynC) in Caldocellum saccharolyticum.This same region shares moderate identity with esterases in other bacterial genera, for instance with BT0152, a predicted esterase. ","
InterPro
IPR000801
Family
Putative esterase
PF00756\"[1-243]TEsterase
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.1820\"[1-243]Tno description
PTHR10907\"[1-182]TESTERASE-RELATED
PTHR10907:SF3\"[1-182]TACETYL ESTERASE (ACETYLXYLOSIDASE)
signalp\"[1-27]?signal-peptide


","BeTs to 3 clades of COG0627COG name: Predicted esteraseFunctional Class: RThe phylogenetic pattern of COG0627 is ----y--cE--h---------Number of proteins in this genome belonging to this COG is 1","***** PF00756 (Putative esterase) with a combined E-value of 6.6e-12. PF00756B 71-97 PF00756C 114-143","Residues 63-144 are 40% similar to a (PROTEIN PRECURSOR SIGNAL ANTIGEN COMPLEX) protein domain (PD002291) which is seen in YC88_MYCTU.Residues 1-236 are 24% similar to a (ACETYL ESTERASE EC 3.1.-.-) protein domain (PD123655) which is seen in XYNC_CALSA.Residues 1-217 are 27% similar to a (XYLANASE PRECURSOR ENDO-1 4-BETA-XYLANASE 4-BETA-D-XYLAN) protein domain (PD017485) which is seen in XYNZ_CLOTM.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Sat Feb 24 19:46:12 MST 2001","Thu Nov 20 20:55:16 2003","Thu Apr 26 16:08:13 MDT 2001","Sat Feb 24 19:46:12 MST 2001","Sat Feb 24 19:46:12 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Sat Feb 24 19:46:12 MST 2001","-41% similar to PDB:1JJF STRUCTURAL BASIS FOR THE SUBSTRATE SPECIFICITY OF THE FERULOYL ESTERASE DOMAIN OF THE CELLULOSOMAL XYLANASE Z OF CLOSTRIDIUM THERMOCELLUM (E_value = 1.6E_12);-41% similar to PDB:1JT2 STRUCTURAL BASIS FOR THE SUBSTRATE SPECIFICITY OF THE FERUL DOMAIN OF THE CELLULOSOMAL XYLANASE Z FROM C. THERMOCELLUM (E_value = 3.7E_12);-51% similar to PDB:1R88 The crystal structure of Mycobacterium tuberculosis MPT51 (FbpC1) (E_value = 1.5E_10);-46% similar to PDB:1SFR Crystal Structure of the Mycobacterium tuberculosis Antigen 85A Protein (E_value = 2.6E_10);","","","Residues 1 to 243 (E-value = 4.2e-23) place PG0390 in the Esterase family which is described as Putative esterase (PF00756)","Thu Apr 26 16:08:13 MDT 2001","34540247","","","","","","1","","","PG0425" "PG0391","465188","464253","936","CTGCTTGGCTTTAGCCGTCAGGCCTTTTATAAACGTCATCTCAACGATTTAGCTAGGCACGAGGAGGATGTCCTATGCAGTAGTATCATCCAATATTGTTGGCACTTAAGACAAGCAGAGCACCTACCTCAAGCTGGCCTCCGAGAGCTCATGGTGCTTTGTCAGCAATACTTCGGCCCCAAGTTCACGCTTGGGCGCGATCGCTTTTGCGCCCTACTCAGACGCCATGGTATGATGCTGCGCAAACGGTCTGTGCGCCCTCGGACAACCAACTCTCGGCATAGGCTCTACAAGTATGAAGACCTGCTCAATACAGAGCCTAAGTTTGTGCCTCAAAGACCTGGGGAACTCCTTGTAGCAGACATCACCTACGTGGCTTACCAAGATGGGTTTGCCTATCTCTCCCTACTGACCGATGCCTATAGTCGCTGTATCGTAGGGTATTGCTTACATCCGACCCTGGAAGTTGAAGGCTGTTTGAATGCTCTACATCAAGCCTTTGCTTTCTACGATCAGCATCAAATTGATACGAGCAATATGATTCATCATAGCGACCGAGGCATTCAGTATGCCGGTAAGAGCTACACCGATCTGTTGCATGGGCGAGGCTGGCGCATCAGCATGACTCAGACGGGAGATCCTCTGCATAATGCATTGGCTGAGCGGATGAACAATACGCTCAAGAACTCGTGGCACATCTCCTCTTCGAAGCAGTCTTTTGATCAAGCACTCCTTTCTGTAGAACAAGCCGTGCGCATGTACAACGAGGCGCGTCCACATCAAGCTCTAGGGGCGAAAACGCCTATGCAAGTCATTGCGCCAGAGTCTAAAAATCCGTTACTGGCAAGGATCGAACATTGGCCGGAGATTGCCCCCGAGCTATACCGAAGGATGAATGTCAGACAAAGAGCTAACTTTGCTCGTGTCAACCGAAAT","10.00","14.52","36296","LLGFSRQAFYKRHLNDLARHEEDVLCSSIIQYCWHLRQAEHLPQAGLRELMVLCQQYFGPKFTLGRDRFCALLRRHGMMLRKRSVRPRTTNSRHRLYKYEDLLNTEPKFVPQRPGELLVADITYVAYQDGFAYLSLLTDAYSRCIVGYCLHPTLEVEGCLNALHQAFAFYDQHQIDTSNMIHHSDRGIQYAGKSYTDLLHGRGWRISMTQTGDPLHNALAERMNNTLKNSWHISSSKQSFDQALLSVEQAVRMYNEARPHQALGAKTPMQVIAPESKNPLLARIEHWPEIAPELYRRMNVRQRANFARVNRN","465038 464253","One of eleven ISPg5 elements in the genome (see Paralogs). Califano et al. report considerable strain diversity of these (Infect. Immun. 68 (9), 5247-5253 (2000)).Member of the IS3 family of insertion elements. See PG0392 for associated ORF.TIGR ID: PG0426","ISPg5 transposase","Cytoplasm","PG0391 is equivalent to the previously reported gb|AAF69128.1| in GenBANK.Numerous significant hits in gapped BLAST to transposase proteins; e.g. residues 91-213 are 55% similar to transposase homolog (U67062) of Bacteriodes thetaiotaomicrom, residues 64-268 are (33%) similar to InsB (AF153317) of Shigella dysenteriae, residues 64-268 are 33% similar to Hp1 (AF081284) of E.coli.","
InterPro
IPR001584
Domain
Integrase, catalytic core
PF00665\"[110-273]Trve
PS50994\"[110-276]TINTEGRASE
noIPR
unintegrated
unintegrated
G3DSA:3.30.420.10\"[113-281]Tno description


","No hit to the COGs database.","***** PF01836 (Transposase) with a combined E-value of 4.3e-23. PF01836B 103-154 PF01836C 181-190 PF01836D 215-222 PF01836E 253-272","No significant hit to the ProDom database.","","Thu Jun 14 10:49:28 MDT 2001","","Thu Jun 14 10:49:28 MDT 2001","Thu Jun 14 10:49:28 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 10:49:28 MDT 2001","Thu Jun 14 10:49:28 MDT 2001","","Wed Jun 20 13:52:45 MDT 2001","Fri Feb 9 16:11:23 MST 2001","Wed Jun 20 13:52:45 MDT 2001","Thu Nov 16 11:14:23 MST 2000","Wed Jun 20 13:52:45 MDT 2001","","yes","Fri Feb 20 15:41:32 MST 1998","PG0391 is paralogously related to PG1861, PG1491, PG0007, PG0418, PG1436, PG1796, PG0034, PG0533, PG1247 and PG0841.","Fri Mar 10 11:00:07 MST 2000","Thu Jun 14 10:49:28 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 110 to 273 (E-value = 8.3e-31) place PG0391 in the rve family which is described as Integrase core domain (PF00665)","Wed Jun 20 13:52:45 MDT 2001","34540248","","Califano,J.V., Kitten,T., Lewis,J.P., Macrina,F.L., Fleischmann,R.D., Fraser,C.M.,Duncan,M.J. and Dewhirst,F.E. Characterization of Porphyromonas gingivalis insertionsequence-like element ISPg5.Infect. Immun. 68 (9), 5247-5253 (2000)","","Thu Nov 16 11:14:23 MST 2000","","1","","","PG0426" "PG0392","465631","465245","387","TTGGGCGGGATGCAACCAGTATCCATTATGGGCAAACATTTAAACAACTTTGAACGCCTTAGCATCCTTGAGGATTACCTCTCGGGGTCAGATAGCAAAGTAGCCATTGAGCAGAAATATGGTCTAAGTCATGGTCTCATTCGCTCTTGGCTTAGTAAATTTGGACTCGAAGATAAAGTTCATCCGGTCCCAATGAAAGTGTCCCAATCCCCCCAGAGTGAGCTACCCCTGAACGAAAAAGAAGAGTTAGAGCAGCTACGTAAAGAGAATCGTGTCCTCAAGAGTCGTCTCAAGCGAGAAGAACTAGGGCATCAAGCCTACAAGCTACTTGTAGAGTTGGCAGAAGAAACCTACGGCATCCGGATACGAAAAAACTCCGAAGCCAAG","9.60","2.96","14783","LGGMQPVSIMGKHLNNFERLSILEDYLSGSDSKVAIEQKYGLSHGLIRSWLSKFGLEDKVHPVPMKVSQSPQSELPLNEKEELEQLRKENRVLKSRLKREELGHQAYKLLVELAEETYGIRIRKNSEAK","465631 465245","See PG0391 for associated transposase.TIGR ID: PG0427. Reported by Chen et al., 2004, to be highly divergent in ATCC 33277.","ISPg5-related orf-1","Cytoplasm","PG0392 is equivalent to the previously reported gbAAF69127.1 in GenBANK. Otherwise, no hits in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Tue Feb 22 13:52:03 2005","Fri Feb 9 17:09:04 MST 2001","Tue Feb 22 13:52:03 2005","Tue Dec 19 15:43:03 MST 2000","","","yes","Fri Feb 20 15:41:32 MST 1998","PG0392 is paralogously related to PG1862, PG1797, PG1490, PG1437, PG0033, PG0532, PG0008, PG1246, PG0840 and PG0419, all ORFs associated with ISPg5-related transposases. ","Tue Dec 19 15:43:03 MST 2000","Tue Feb 22 13:52:03 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540249","","Califano,J.V., Kitten,T., Lewis,J.P., Macrina,F.L., Fleischmann,R.D., Fraser,C.M., Duncan,M.J. and Dewhirst,F.E. Characterization of Porphyromonas gingivalis insertion sequence-like element ISPg5. Infect. Immun. 68 (9), 5247-5253 (2000) 20407340Chen T, Hosogi Y, Nishikawa K, Abbey K, Fleischmann RD, Walling J, Duncan MJ.Comparative whole-genome analysis of virulent and avirulent strains of Porphyromonas gingivalis.J Bacteriol. 2004 Aug;186(16):5473-9.PMID: 15292149","","Tue Feb 22 13:52:03 2005","","1","","","PG0427" "PG0392.1","466219","465923","297","GTGGATTTTACCAGAATGCGACGAGCCCTATCAAATAATTTTCAGGTGATAAAGACCAATCGCAACGGCCGCAAAGTTCCGATATTTTTTTCATTCACAAGACATTCCGCTCCAAAATATTTGGATTCCATGCCTGTCCGCGAGAGAAAAGAATGCGGCGAAGGCTTCTTCGCAAATCGCATTTCAACATCAAAAGGATGGCACCCCGAGACTTATTCCTGTTTGCCTGCTCTGCGGCAAACAAAATGTCGCAAAAGGATACTTTCTCCATGCAAGTTGTTTTTACTTGTCAGAGCA","","","11593","VDFTRMRRALSNNFQVIKTNRNGRKVPIFFSFTRHSAPKYLDSMPVRERKECGEGFFANRISTSKGWHPETYSCLPALRQTKCRKRILSPCKLFLLVRA","","NO TIGR ID corresponds to this gene.","hypothetical protein","Periplasm, Cytoplasm","No hit found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Thu Feb 15 16:14:58 MST 2001","","Thu Feb 15 16:14:58 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG0393","466240","468096","1857","ATGACGGAAAAAACTACCGTAAAAACGCTGAAAGATGTTGTAGTCCGATTCTGCGGCGACTCCGGAGATGGGATGCAGCTGACCGGAACGATATTCTCCGACCTTTCGGCGGTGTTTGGCAACACCATTTCCACTTTCCCGGACTATCCGGCAGAAATTCGTGCTCCACAAGGGACATTGGGCGGAGTATCCGGATTTCAAGTGCACATCGGAACCGATCTGGTACGTACTCCCGGCGATTTGGCTGACGTTCTCGTAGCCATGAACCCTGCCGCTCTCAAAGTTAACCGGACACACGTAAGACGGGACTCCATTATTATTATCGACTCTGACTCTTTCATGGCATCTGATTTGGAGAAAGCAGAAATTGCCTCTGAAGACTTCATGACCGAGTTGGGGCTTACGACGCAAGAGCTTTTCACCGTACCGATTTCGTCCATGGTGAAGAAGTCTACGGCAGAGTTCGGCCTCGACGTGAAAGCAGCACTCCGTTGCAAGAACATGTTTGCACTCGGTCTCGTATGTTGGTTGTTCGACCGCCCTACACAGCATGCCATAGACTATCTGAATAGAAAATTCGGCAAAAAAGAAGCCATTCTCAATGCCAATATCAAGGCTCTCGCAGATGGTTTCAACTATGGACATAATACCCACGCTACGGCTACGACCTATCGAATCGAAGGTCGCAAACAAACTCCCGGGGTATATATGGATATCAGCGGAAACAAAGCCACGGCTTATGGTTTGGTTGCCGCTGCAGAACATGCCAATCTCAACCTCTTCCTCGGTAGTTACCCCATCACTCCTGCTACCGACATCCTGCACGAGCTCGCCAAATTGAAATCTCTGGGAGTAAAGACCGTTCAGGCTGAAGACGAAATCGCGGGTATCTGTACGGCTATCGGTGTATCGTTTGCCGGTGATCTGGCCGTAACCACTACCTCCGGCCCGGGTTTGGCTCTGAAGAGCGAGGCCCTCGGTCTGACAGTAATGGCCGAACTTCCCCTTGTACTGGTGGACGTTCAGCGTGGTGGCCCCTCGACCGGTTTGCCGACCAAGAGCGAACAGACCGACTTGTTGCAGGCCTTGTTCGGACGCAACGGAGAAAGCCCCATCCCTGTCATAGCCGCCACGACGCCGTCAGACTGCTTCGACTCTGCTTTCTGGGCATGTAAGATAGCTTTGGAGCATATGACACCGGTTATCCTGCTGACGGATGCTTTCATCGCTAACGGCTCCTCTGCATGGAGAATCCCCGATCCCCAATCATATCCCGATATCCGTCCTCCCTACGTGGATCAGTATAAGGGCGAAGCCAAATGGAGACCTTACTTCAGAAATGAAGAGACCCACGTTCGCTATTGGGCTATCCCCGGACAGGAAGGCTTCCAGCACCGTTTGGGCGGTTTGGAGAAGGACTATGTGACCGGTGCCATCAGCACCAATCCGGAGAATCACGCCAAGATGGTCGCTACGCGTGAAGCCAAGGTTCAAGCTATTGCCCAAGATATTCCTGATTTGGAAGTACACGGCGATAAAGACGATGCCGAGCTTTTGATCATCGGTTGGGGCGGTACCTATGGCCACCTCTATGAGACAATGGAGCGTATGCGCAATGCCGGCAAGAAAGTGGCTTTGGCTCACTTCCGCTTTATCAATCCGCTTCCCAAGAATACGGCAGAAGTACTGCAACGCTATCCGAAGGCAGTGGTTGCCGAGCAGAATTTGGGACAGTTTGCACTCTATCTGCGAGGCGAAGTTCCCGGATTCCACCCGCTGCAGTTCAACCGTGTGACCGGCCAGCCGCTTGTTATGAGTGAGATGGTAGAAGTATTCACGCAAATGATGGAGGAGAAA","5.80","-10.62","67538","MTEKTTVKTLKDVVVRFCGDSGDGMQLTGTIFSDLSAVFGNTISTFPDYPAEIRAPQGTLGGVSGFQVHIGTDLVRTPGDLADVLVAMNPAALKVNRTHVRRDSIIIIDSDSFMASDLEKAEIASEDFMTELGLTTQELFTVPISSMVKKSTAEFGLDVKAALRCKNMFALGLVCWLFDRPTQHAIDYLNRKFGKKEAILNANIKALADGFNYGHNTHATATTYRIEGRKQTPGVYMDISGNKATAYGLVAAAEHANLNLFLGSYPITPATDILHELAKLKSLGVKTVQAEDEIAGICTAIGVSFAGDLAVTTTSGPGLALKSEALGLTVMAELPLVLVDVQRGGPSTGLPTKSEQTDLLQALFGRNGESPIPVIAATTPSDCFDSAFWACKIALEHMTPVILLTDAFIANGSSAWRIPDPQSYPDIRPPYVDQYKGEAKWRPYFRNEETHVRYWAIPGQEGFQHRLGGLEKDYVTGAISTNPENHAKMVATREAKVQAIAQDIPDLEVHGDKDDAELLIIGWGGTYGHLYETMERMRNAGKKVALAHFRFINPLPKNTAEVLQRYPKAVVAEQNLGQFALYLRGEVPGFHPLQFNRVTGQPLVMSEMVEVFTQMMEEK","466240 468096","Veith et al. (2002) identified this protein by two-dimensional gel electrophoresis and peptide mass fingerprinting of outer membranes prepared from strain W50. The beta subunit is immediately downstream at PG0394.TIGR ID: PG0429","pyruvate synthase alpha subunit/ ferredoxin oxidoreductase alpha subunit","Cytoplasm","Residue 16 to 586 share 51% identity with pir||F70864, a probable oxidoreductase alpha subunit in Mycobacterium tuberculosis.Residue 16 to 617 share 49% identity with emb|CAC08296.1| (AL392148), a putative oxidoreductase in Streptomyces coelicolor.Residue 16 to 466 share 35% identity with gb|AAD17273.1| (AF119361), a ferredoxin oxidoreductase a-subunit in Frankia sp. EuIK1.THis region also shares identity with ferredoxin oxidoreductase a-subunits in other bacterial genera.This sequence is similar to BT2836.","
InterPro
IPR002880
Domain
Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal
PF01855\"[251-420]TPOR_N
InterPro
IPR009014
Domain
Transketolase, C-terminal-like
SSF52922\"[506-618]TTransketo_C_like
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.970\"[217-430]TG3DSA:3.40.50.970
SSF52518\"[233-511]TSSF52518
SSF53323\"[11-263]TSSF53323


","BeTs to 8 clades of COG0674COG name: Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunitFunctional Class: CThe phylogenetic pattern of COG0674 is AMTKYQVce-r-UJ---l---Number of proteins in this genome belonging to this COG is 4","***** PF01558 (Pyruvate ferredoxin/flavodoxin oxidoreductase) with a combined E-value of 1.3e-12. PF01558A 301-352 PF01558B 363-417***** PF01855 (Pyruvate flavodoxin/ferredoxin oxidoreductase (N terminus)) with a combined E-value of 2e-10. PF01855A 260-273 PF01855B 312-324 PF01855C 515-524","Residues 312-497 are 57% similar to a (OXIDOREDUCTASE SUBUNIT PYRUVATE ALPHA) protein domain (PD001493) which is seen in O53182_MYCTU.Residues 504-586 are 56% similar to a (OXIDOREDUCTASE ALPHA SUBUNIT) protein domain (PD127722) which is seen in O53182_MYCTU.Residues 16-285 are 46% similar to a (OXIDOREDUCTASE ALPHA SUBUNIT FERREDOXIN A-SUBUNIT) protein domain (PD132744) which is seen in O53182_MYCTU.Residues 508-602 are 38% similar to a (2-OXOACID:FERREDOXIN OXIDOREDUCTASE, ALPHA SUBUNIT) protein domain (PD127723) which is seen in O26636_METTH.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Thu Mar 28 14:23:27 2002","Thu Apr 26 16:41:32 MDT 2001","Fri Dec 19 10:23:57 2003","Thu Feb 7 17:54:15 2002","Sat Feb 24 19:57:31 MST 2001","Sat Feb 24 19:57:31 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 239 to 614 share 24% identity with PG1583.The region also shows weak ideneity to PG0607, an indolepyruvate ferredoxin oxidoreductase, alpha subunit.","Sat Feb 24 19:57:31 MST 2001","Sat Feb 24 19:57:31 MST 2001","-51% similar to PDB:1YD7 Conserved hypothetical protein Pfu-1647980-001 from Pyrococcus furiosus (E_value = 6.3E_39);","","","Residues 251 to 485 (E-value = 2e-62) place PG0393 in the POR_N family which is described as Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-binding domain (PF01855)","Thu Apr 26 16:39:10 MDT 2001","34540251","","Veith,P., Talbo,G., Slakeski,N., Dashper,S., Moore,C.,Paolini,R., Reynolds,E., Major outer membrane proteins and proteolytic processing of RgpA, and Kgp of Porphyromonas gingivalis W50, Biochem J. 2002 (in press).","","Thu Feb 7 17:54:15 2002","","1","","","PG0429" "PG0394","468126","469130","1005","ATGTACGAGGCAAAAGACTATAAGAGCGATCAGTATGTGCGTTGGTGTCCGGGTTGCGGCGACCACGCTGTGGTAGTAACCCTCCAGAAGGCAATGGCCGAAATAGGGATCCCTCCCCATCAGACGGCGGTAATGTCCGGTATCGGATGTTCTTCCCGTTTGCCATACTATATGAACACCTATGGCTTCCACACCATTCACGGTCGTGGTGCAGCCATCGCGACCGGCGTGAAGACAGCCAATCCGGAGCTTTCCGTATGGCTCGCATCCGGAGATGGTGACAGCTTGGCTATCGGCGGCAACCACTTCATTCATGCCGTGCGCAGGAATATCGATATCAATGCAGTTCTCTTCAATAACCGTATCTATGGTCTGACCAAAGGCCAATACTCTCCTACCTCAGCTCGCGGATTCGTATCCAAGAGTTCTCCCTACGGTACGGTAGAAGATCCGTTTATCCCCGCAGAACTGGTACTCGGTGCTCGTGGCAACTTCTTTGCCCGCGCTATCGACGTGGACATGAAGACCCTGCAGGAGTGCTTCGTAGCCTCGGCACGTCATAGAGGTTTTGCCGTTACGGAAGTATTGGTGAACTGCGTGATTTTCAACGACGGTACGCATAAGGACCGCTCACACAAGGATATTCGTGCCGACCGTACCATCACGCTGCGTCATGGCGAGAAGATGATCTTCGGTGCCAATCGCGATAAAGGAATCGTATTGGAAGGTCTCAAGCTTCGTGCCGTTACGATAGGCGAAGACGGTTACACCCTCGATGACGTACTCGTGCACGATAAGTATGAGCAGGACGTAACGCTGCACCATCTCCTCGCAATGATGGGTTACACGGATGATAGTATGCCTATCGCTCTCGGTGTCATCCGCGACGTGGAAGCACCCTGCTACGACAGAGCGGTGGAAGCCCAGATCGAAGAGATCCAGCAGAAGAACCCCATACGCAAGCTCCATGATCTCCTCATCCAAGGAGACGTTTGGGAGATCAAA","6.70","-1.90","37077","MYEAKDYKSDQYVRWCPGCGDHAVVVTLQKAMAEIGIPPHQTAVMSGIGCSSRLPYYMNTYGFHTIHGRGAAIATGVKTANPELSVWLASGDGDSLAIGGNHFIHAVRRNIDINAVLFNNRIYGLTKGQYSPTSARGFVSKSSPYGTVEDPFIPAELVLGARGNFFARAIDVDMKTLQECFVASARHRGFAVTEVLVNCVIFNDGTHKDRSHKDIRADRTITLRHGEKMIFGANRDKGIVLEGLKLRAVTIGEDGYTLDDVLVHDKYEQDVTLHHLLAMMGYTDDSMPIALGVIRDVEAPCYDRAVEAQIEEIQQKNPIRKLHDLLIQGDVWEIK","468096 469130","The alpha subunit is immediately upstream, PG0393.TIGR ID: PG0430","ferredoxin oxidoreductase beta subunit","Cytoplasm","Residues 3-334 share 45% identity with pir||E70864, a probable oxidoreductase in Mycobacterium tuberculosis (strain H37RV).Residues 5-334 share 45% identity with emb|CAC08295.1| (AL392148), a putative oxidoreductase in Streptomyces coelicolor.Residues 4-334 share 40% identity with gb|AAD17274.1| (AF119361), a ferredoxin oxidoreductase b-subunit in Frankia sp. EuIK1.This region shares a similar degree of identity with a number of additional bacterial ferredoxin oxidoreductase beta chains.This sequence is similar to BT2837.","
InterPro
IPR011766
Domain
Thiamine pyrophosphate enzyme, C-terminal TPP-binding
PF02775\"[47-195]TTPP_enzyme_C
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.970\"[15-216]TG3DSA:3.40.50.970
SSF52518\"[2-216]TSSF52518


","BeTs to 11 clades of COG1013COG name: Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunitFunctional Class: CThe phylogenetic pattern of COG1013 is AMTKyQVce-r-UJ---l---Number of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","Residues 16-134 are 35% similar to a (OXIDOREDUCTASE PYRUVATE SUBUNIT IRON-SULFUR BETA) protein domain (PD119378) which is seen in O26801_METTH.Residues 6-133 are 53% similar to a (FERREDOXIN OXIDOREDUCTASE-LIKE BETA) protein domain (PD207984) which is seen in O33849_THETH.Residues 133-206 are 48% similar to a (OXIDOREDUCTASE PYRUVATE SUBUNIT BETA) protein domain (PD001502) which is seen in O53181_MYCTU.Residues 30-195 are 42% similar to a (THIAMINE FLAVOPROTEIN PYROPHOSPHATE LYASE SYNTHASE) protein domain (PD000397) which is seen in P72579_SULSO.","","Thu Jun 14 10:49:48 MDT 2001","","Thu Jun 14 10:49:48 MDT 2001","Thu Jun 14 10:49:48 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 10:49:48 MDT 2001","Thu Jun 14 10:49:48 MDT 2001","","Tue Mar 26 16:48:56 2002","Mon May 21 17:00:00 MDT 2001","Fri Dec 19 10:25:28 2003","Tue Mar 26 16:48:56 2002","","Wed Jun 20 13:55:33 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1-199 share 30% identity with PG1582, ketoisovalerate/2-oxoacid-ferredoxin oxidoreductase alpha chain.","Wed Jun 20 13:55:33 MDT 2001","Tue Feb 27 12:34:14 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 14 to 202 (E-value = 3.4e-79) place PG0394 in the TPP_enzyme_C family which is described as Thiamine pyrophosphate enzyme, C-terminal TPP binding domain (PF02775)","Wed Jun 20 13:55:33 MDT 2001","34540252","","","","","","1","","","PG0430" "PG0395","470769","469366","1404","ATGACACCACTACCTCAAGATTTTGTCTCCGCTATGCGCCCACTGTTAGGGAGCGAAGCCGAAGCTTTTTTTGCAGCTCTCGACAGCCCTGCACCTGTAAGCATACGTCGCAATCCTAATAAACCGGGCATCGGTACCACTGTAATGGATCTGCCCACCAATAAGTCTGTGCCCTGGTGTCCCCTCGGTACATATCTGGCTGAGAGGCCTTCCTTCACCAATGATCCGGTTTTCCATGCCGGAGGCTACTATGTACAGGAAGCCTCTTCCATGTTTTTGTGGCAGTTGAAACCTCTGCTCGGCGAATCACCTGTCCGGGCTTTGGATCTCTGCGCTTCCCCGGGCGGAAAGAGCACACTCCTAACCAACATATTGCCCGAAGGCAGTGTATTGGTCAGCAATGAAGTGATCCACCATCGCGCCAATATACTGGCTGAGAACATGATCAAGTGGGGCTATCCGACCGGTATTGTCACCGAAGCAGATCCCGATAGGTTGAAATCCGCAGGAGAGACTTTCGACTTCATTCTGGTCGATGCTCCTTGCTCGGGAGAAGGCATGTTCCGTAAAGATGAGGCTACTCGATCCGAATGGAGCCTGCAAAATGTGGAGCTTTGTGCTCGCAGGCAGCAGCGTATCCTCTCTGCCGCATGGGAAATGTTACAGCCGGGAGGTCTCTTGGCATACAGCACCTGTACCTTCAATACGCTTGAGAACGAAGACAATCTGGCCTTCCTCATCGATACTTTCGGAGCGGAGCCTGTGGCTTTGGATGTTCTCACCGAATGGCAGATCGCCCCTCAACTCAAAGGTGAGGCACCGGCATACCGTTTCTTCCCTCATAAAGTTGCGGGTGAAGGATTTTTCTTCTGCCTCGTTCGCAAACCGGAGAGAGAATCGGTAAGGCATAAGCAACCCAAGAGCAAGGAAAAGAAAAACGCAGAAAAGCATATCCCTCATGGTATCAAATGCTTCGTACATGCCCCTGAAAAATACGAATGGCGATGGATGGGAGACGAGTATGTGCATGCTCTTACTCCCAATGTGCTCGAAATGGTCGAATGTCTCAAGGCAAATGGCATCAGGCTGCACACAGCAGGGATCACAGTGGGGATGCAGAAGGGGAAAGATCTTGTACCGGCTCCGGCTCTGGCTTTGTCCACGGAAATGGACGACCACTCATTCTTCGATATGGAATTTTCACGAGATGAAGCTCTCTCCTACCTGGCCCGACAGTCTGTGACCACCATGCCCGATCTGCCGCTCGGCTTCGTCCTCGCCACGTTCCGCAGAAGGCCGCTCGGCTTCCTGAAAAATCTCGGCACACGTGCCAACAATCTATATCCGCAGGATTGGCGCATTCGAAATCTCGAAACCTCCGAGGACTGTATGGAAGCCAAAGAC","5.90","-7.74","52309","MTPLPQDFVSAMRPLLGSEAEAFFAALDSPAPVSIRRNPNKPGIGTTVMDLPTNKSVPWCPLGTYLAERPSFTNDPVFHAGGYYVQEASSMFLWQLKPLLGESPVRALDLCASPGGKSTLLTNILPEGSVLVSNEVIHHRANILAENMIKWGYPTGIVTEADPDRLKSAGETFDFILVDAPCSGEGMFRKDEATRSEWSLQNVELCARRQQRILSAAWEMLQPGGLLAYSTCTFNTLENEDNLAFLIDTFGAEPVALDVLTEWQIAPQLKGEAPAYRFFPHKVAGEGFFFCLVRKPERESVRHKQPKSKEKKNAEKHIPHGIKCFVHAPEKYEWRWMGDEYVHALTPNVLEMVECLKANGIRLHTAGITVGMQKGKDLVPAPALALSTEMDDHSFFDMEFSRDEALSYLARQSVTTMPDLPLGFVLATFRRRPLGFLKNLGTRANNLYPQDWRIRNLETSEDCMEAKD","FMU/SUN-related methyltransferase","rRNA methyltransferase, through similarity, belongsto the Fmu (SUN) (bacterial)/nucleolar proteinNol1/Nop2 (eukaryotes) family. It is a RNAmethyltransferase.TIGR ID: PG0432","proliferating-cell nucleolar protein/rRNA methylase","Cytoplasm","This sequence is similar to CT553 of Chlamydia trachomatis.Numerous moderately significant hits in gapped BLAST to probable proliferating-cell nucleolar antigens; e.g. residues 1-453 are 30% similar to AE006564 of Streptococcus pyogenes, residues 5-451 are 27% similar to AE005406 of Escherichia coli, residues 20-296 are 32% similar to AE001045 of Archaeoglobus fulgidus.This sequence is similar to BT2042.","
InterPro
IPR001678
Domain
Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p
PF01189\"[76-294]TNol1_Nop2_Fmu
InterPro
IPR006174
Domain
rRNA subunit methyltransferase
PD005242\"[25-93]TNusB_region
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.150\"[86-296]TG3DSA:3.40.50.150
PTHR22807\"[76-442]TPTHR22807
PTHR22807:SF6\"[76-442]TPTHR22807:SF6
SSF53335\"[4-295]TSSF53335


","BeTs to 10 clades of COG0144COG name: Predicted rRNA methylaseFunctional Class: JThe phylogenetic pattern of COG0144 is Am-KY-vcEbrh------in-Number of proteins in this genome belonging to this COG is 1","***** IPB001678 (NOL1/NOP2/sun family) with a combined E-value of 5e-32. IPB001678B 107-121 IPB001678C 131-147 IPB001678D 173-193 IPB001678E 222-248 IPB001678F 280-295","Residues 80-297 are 34% similar to a (PROTEIN NUCLEOLAR FMU LONG) protein domain (PD003196) which is seen in YEBU_ECOLI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","Wed Mar 22 15:11:55 MST 2000","Wed Dec 10 14:24:21 2003","Wed Dec 10 14:25:01 2003","Wed Dec 10 14:24:21 2003","Wed Jun 6 13:23:51 MDT 2001","Wed Jun 6 13:23:51 MDT 2001","Wed Jun 6 13:23:51 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Jul 17 14:50:01 2007","-44% similar to PDB:2FRX Crystal structure of YebU, a m5C RNA methyltransferase from E.coli (E_value = 6.4E_33);-46% similar to PDB:1IXK Crystal Structure Analysis of Methyltransferase Homolog Protein from Pyrococcus Horikoshii (E_value = 1.4E_27);-47% similar to PDB:1SQF The crystal structure of E. coli Fmu binary complex with S-Adenosylmethionine at 2.1 A resolution (E_value = 1.9E_16);-47% similar to PDB:1SQG The crystal structure of the E. coli Fmu apoenzyme at 1.65 A resolution (E_value = 1.9E_16);","","","Residues 23 to 294 (E-value = 2.8e-22) place PG0395 in the Nol1_Nop2_Sun family which is described as NOL1/NOP2/sun family (PF01189)","Wed Jun 6 13:23:51 MDT 2001","34540254","","","Valdez,B.C., Perlaky,L., Saijo,Y., Henning,D., Zhu,C., Busch,R.K., Zhang,W.W. and Busch,H. A region of antisense RNA from human p120 cDNA with high homology to mouse p120 cDNA inhibits NIH 3T3 proliferation. Cancer Res. 52 (20), 5681-5686 (1992). PubMed: 1394192.Busch,H. The final common pathway of cancer. Cancer Res. 50 (16), 4830-4838 (1990). PubMed: 2199030.","","Tue Jul 17 14:50:01 2007","1","","","PG0432" "PG0396","471486","470776","711","ATGATGGAAAACAATCCCACTCTCTATCTTATTCCGGTACCGCTGGGCGAAACCGAGCACAGCCGCGTACTGCCCGAATACAACAGGACGATCGTCCGCAGCCTGCACCATTTCATTGTAGAGAATATCCGTTCGGCCCGTCGTTTCCTGAAAACGGCAGACCGATCTATCGATATAGATTCGCTCACCTTCTACGAACTCAACAAGCATACATCGGCAGAGGAGGTCAGTACCTATCTCCACCCTATGGCTGCAGGTGAGAGCATGGGGGTTATCTCCGAAGCCGGGTGTCCTGCAATAGCAGATCCGGGCGCGGATGTGGTAGCCATCGCACAGCGCAAGGGATTGAGGGTGGAGCCACTCGTGGGGCCGAGTTCGATCCTGATGGGACTGATGGCTTCCGGCTTCAATGGTCAGAGCTTCGCTTTCAAAGGCTACCTGCCCATCGGAGAAAATGAGCGTTTGGCTGCTTTCAAAGAAATGGAGACGCGGATTTATAAGTGTCACGAGACGCAGATCTTCATCGAAACACCTTATCGAAACGACAAACTGGTGGACGAACTCATTCGCCACTGCCGGCCGACGACCAAACTATGCATTGCCTCCCATATCTCCTGTCCCGACGAACTGATTCGTACTCGTACCCTCTCGGAATGGAAGAAAGGGAAGCCTGCACTACATAAAATTCCAACTATCTTCTTACTCTATAAA","7.80","2.94","26726","MMENNPTLYLIPVPLGETEHSRVLPEYNRTIVRSLHHFIVENIRSARRFLKTADRSIDIDSLTFYELNKHTSAEEVSTYLHPMAAGESMGVISEAGCPAIADPGADVVAIAQRKGLRVEPLVGPSSILMGLMASGFNGQSFAFKGYLPIGENERLAAFKEMETRIYKCHETQIFIETPYRNDKLVDELIRHCRPTTKLCIASHISCPDELIRTRTLSEWKKGKPALHKIPTIFLLYK","471486 470776","TIGR ID: PG0433","conserved hypothetical protein (possible SAM-dependent methyltransferase)","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 5-236 are 49% similar to gb|AAF42238.1| conserved hypothetical protein of Neisseria meningitidis MC58, residues 7-236 are 38% similar to gb|AAF73660.1| tetrapyrrole methylase family protein of Chlamydophila pneumoniae AR39, residues 8-234 are 36% similar to gb|AAC67639.1| SAM-dependent methyltransferase of Chlamydia trachomatis.","
InterPro
IPR000878
Domain
Tetrapyrrole methylase
PF00590\"[7-220]TTP_methylase
SSF53790\"[5-221]TCor/por_Metransf
InterPro
IPR008189
Family
Protein of unknown function UPF0011
PIRSF005917\"[5-237]TMtase_YraL
noIPR
unintegrated
unintegrated
PTHR21091\"[55-188]TPTHR21091
PTHR21091:SF18\"[55-188]TPTHR21091:SF18


","BeTs to 12 clades of COG0313COG name: Predicted methyltransferasesFunctional Class: RThe phylogenetic pattern of COG0313 is -----qvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","Residues 7-204 are 38% similar to a (PROTEIN INTERGENIC REGION MG056 SAM-DEPENDENT) protein domain (PD007098) which is seen in Q9Z8G1_BBBBB.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu May 24 10:02:14 MDT 2001","Tue Mar 27 13:07:00 MST 2001","Wed Mar 14 16:39:08 MST 2001","","Wed Mar 14 16:39:08 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 8-180 show 28% similarity to PG0220, a conserved hypothetical protein.","Wed Mar 14 16:39:08 MST 2001","Wed Mar 14 16:39:08 MST 2001","-80% similar to PDB:1WYZ X-Ray structure of the putative methyltransferase from Bacteroides thetaiotaomicron VPI-5482 at the resolution 2.5 A. Norteast Structural Genomics Consortium target Btr28 (E_value = 5.9E_86);-44% similar to PDB:4SBV THE REFINEMENT OF SOUTHERN BEAN MOSAIC VIRUS IN RECIPROCAL SPACE (E_value = 5.9E_86);-55% similar to PDB:1YBT MYCOBACTERIUM TUBERCULOSIS ADENYLYL CYCLASE, RV1900C CHD (E_value = 5.9E_86);-55% similar to PDB:1YBU Mycobacterium tuberculosis adenylyl cyclase Rv1900c CHD, in complex with a substrate analog. (E_value = 5.9E_86);","","","No significant hits to the Pfam 11.0 database","Wed Mar 14 16:39:08 MST 2001","34540255","","","","","","1","","","PG0433" "PG0397","472603","471527","1077","TTGGGGTCTAATCCGATGGGTGGATTTCTGCCGGTCGTCTTATTGCTCCTGTTGCTGCCGAGTGCGGGGATAATGGTGGCATGGACGGCTGCCATTGCTCTCTTTGCAATCATCGGAGGGATGCTCTTTTTTCGTCGAAAAAGCAAGAACTGTCAGCCGTCCGTATTGACTTCGCTGGGTGTACTTGTTCTTTTGCTACCTACTTTGTGGCTATCCAAGACTTCCCCGCTCACCGACCTTGGCTGGAGTCTGGCTGCTATGCTCTTGGCTGTGGCTGCGTGCAGGCTGTTCCGCAGAAGCAGTGGCAGAGAGGGAGACTATGCGGATTGTCCGCACAAACGTCTGGTCATGCTGGAGTATGGACGCATTACAGGCAGCATCCTGCGTATATCGTTATTTTTCATTTTCCTTCTGGGACTTTTGCTCTACTTCAGGGTGGGGAGGATTGCACACCTCTTATTGTATCTGCCCGGTGTATCGCTGTTATTGCTCTATATATATGAGGTGATTCGACTCGAATGGGTACGTAGAGAAATGCACCACGAGGAGTGGATACCGATCACGGATGCACAGGGTGAATCCATCGGACGTATAGCACGATCCGAGACGGAAGCCTTGGCCGATCCTACTGCAGGTCTGCTGCCCGTCGTTCGCCTGATAGCCATATGCGACGGGATGATCTATTTGAGCCATTACTGCAAATGCGATCTTTGCACGGGCGACTGCTATGATACCCCTTTCTTTTCGTGGCTGACTACTGATAAGCATCACAAGGAATTGGCTCAAAGTCTCATAGACGAACGATTCTGCGGTGTAAATCGTCTGAGACCGCACTTTCTCCTGCGATATATCCACAATGAAAATGGAAAAGACCGACTCGTCTATCTCTATTTGGCTCACATGTCCGAATCGAATACGATCTTGTGCGACAAGGATCCGCGAGCCGGGAAGTGGTGGCCGGTGGATCAGATCGAAGAGCAGCTTTCGGGTCTGACTTTCAGCCCTTATCTCCGCAGTGAAATGCCTTATCTGAGGCAGACGGTACTATTAGCCGAACAGCTCACGAATCTTCACGAA","7.60","3.18","40741","LGSNPMGGFLPVVLLLLLLPSAGIMVAWTAAIALFAIIGGMLFFRRKSKNCQPSVLTSLGVLVLLLPTLWLSKTSPLTDLGWSLAAMLLAVAACRLFRRSSGREGDYADCPHKRLVMLEYGRITGSILRISLFFIFLLGLLLYFRVGRIAHLLLYLPGVSLLLLYIYEVIRLEWVRREMHHEEWIPITDAQGESIGRIARSETEALADPTAGLLPVVRLIAICDGMIYLSHYCKCDLCTGDCYDTPFFSWLTTDKHHKELAQSLIDERFCGVNRLRPHFLLRYIHNENGKDRLVYLYLAHMSESNTILCDKDPRAGKWWPVDQIEEQLSGLTFSPYLRSEMPYLRQTVLLAEQLTNLHE","472639 471527","TIGR ID: PG0434","conserved hypothetical protein","Inner membrane, Cytoplasm","Its nearest neighbor in the NR database is gi:53712267 from Bacteroides fragilis YCH46.","
InterPro
IPR001899
Domain
Surface protein from Gram-positive cocci, anchor region
TIGR01167\"[18-50]TLPXTG_anchor: LPXTG-motif cell wall anchor
noIPR
unintegrated
unintegrated
signalp\"[1-23]?signal-peptide
tmhmm\"[24-44]?\"[54-72]?\"[78-96]?\"[123-143]?\"[149-167]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 10:50:07 MDT 2001","","Thu Jun 14 10:50:07 MDT 2001","Thu Jun 14 10:50:07 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 10:50:07 MDT 2001","Thu Jun 14 10:50:07 MDT 2001","","","Wed Mar 2 10:56:38 2005","Wed Mar 2 10:56:38 2005","Thu Feb 15 16:16:56 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 15 16:16:56 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Jun 20 13:56:33 MDT 2001","34540256","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Wed Mar 2 10:56:38 2005","","1","","","PG0434" "PG0398","473541","472801","741","ATGTTTTCTATTTTTAAGCGAAAAACGAAGCAAGTCAATCCCTTTGAACAAGGATGGTTGACTGACCTGATAGATATACATTGTCATCTGTTGCCTGCAGTGGATGACGGTTCAAAATCTATCGAAGAGACTCTCTCTCTAATTGATCTGCTCGAAGAAATAGGTGTCAAACAACATATACTCACTCCCCATATTATGGAGGAGTATCCATCGAATGATGCCATTTTTCTACGTGCACGCTTCGAAGAGTTGCTTGCTGCTATCACTCCGGATAAGGCCTCGCGCCTACGGCTCGCGGCAGAGTATATGTTGGATGTTGCTTTCCTTGATAGGTTGGCAGAACCGCTTCTGACGCTGGGAGATCGTTACATTTTGGTGGAAACCTCCTATATGGCTCCTCCTATAGGATTAATGGGGCTACTTGCCGATCTGCGATTCAAAGGCCTCTCTCCCGTATTGGCACACCCCGAACGTTATCTATACATGGAGGAGAAAGATTATGTCGCGATCAAAAAGCAAGGCGTAATGTTTCAACTGAACCTCTTTTCTCTGTTCGGAGCATACAATTCATCTGCATCAGAAAAAGCATATGCATTACTCGAGGCCGGCTATTACGATCTCATAGGGACAGATATACATCACCTGCAGCCTATAGCCCGATTGCTGTCCGAGGCTTCTTTGCCTCCGGATCTGGAGGGAAAAATCAAGAGTTTGGTGGAAAACAATACCCGTTTGTTTTCT","5.00","-9.35","27930","MFSIFKRKTKQVNPFEQGWLTDLIDIHCHLLPAVDDGSKSIEETLSLIDLLEEIGVKQHILTPHIMEEYPSNDAIFLRARFEELLAAITPDKASRLRLAAEYMLDVAFLDRLAEPLLTLGDRYILVETSYMAPPIGLMGLLADLRFKGLSPVLAHPERYLYMEEKDYVAIKKQGVMFQLNLFSLFGAYNSSASEKAYALLEAGYYDLIGTDIHHLQPIARLLSEASLPPDLEGKIKSLVENNTRLFS","473541 472801","TIGR ID: PG0435","capsular polysaccharide biosythesis protein","Cytoplasm","Residues 23 to 216 share 27% identity with embCAB07456.1 (Z92952), a product similar to Staphylococcus aureus CapC proteinfound in Bacillus subtilis.Residues 23 to 255 share 24% identity with refNP_053031.1, the EpsC protein in Lactococcus lactis subsp. cremoris.This region shares moderate identity with other hypothetical proteins.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 23-216 are 27% similar to a (PROTEIN CPSB CAPC EPSB) protein domain (PD005836) which is seen in P96717_BACSU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Sep 30 11:34:59 2004","Thu Sep 30 11:34:59 2004","Tue Feb 27 12:38:43 MST 2001","","Tue Feb 27 12:38:43 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 27 12:38:43 MST 2001","-43% similar to PDB:1MEJ Human Glycinamide Ribonucleotide Transformylase domain at pH 8.5 (E_value = );-43% similar to PDB:1MEN complex structure of human GAR Tfase and substrate beta-GAR (E_value = );-43% similar to PDB:1MEO human glycinamide ribonucleotide Transformylase at pH 4.2 (E_value = );-43% similar to PDB:1NJS human GAR Tfase in complex with hydrolyzed form of 10-trifluoroacetyl-5,10-dideaza-acyclic-5,6,7,8-tetrahydrofolic acid (E_value = );-43% similar to PDB:1RBM Human GAR Tfase complex structure with polyglutamated 10-(trifluoroacetyl)-5,10-dideazaacyclic-5,6,7,8-tetrahydrofolic acid (E_value = );","","","No significant hits to the Pfam 11.0 database","Tue Feb 27 12:38:43 MST 2001","34540257","","","","","","1","","","PG0435" "PG0399","476019","473554","2466","ATGAATTTGAACGAAGACTCCAAAAACACGTTTACCCGGCAGGGTAGATCCTATATTTCCGATACGGAAGATACCGCATTCTTCTCCTTAGAAGAATTTTTTCTTAGTCTCCTGACATCATGGAAATGGATTGTAGCGAGTGTATTGGCCTGTTTGCTCATCGCCTATATTTATATCCAACGCCAGTCCCCGATCTATCATGCACAGGCTACCGTGCTGATCAAAAGTGCAGAGAAAAGCGGTGCGACAAGTGGCCTGCAGCAGTTCCAGGAACTCGGCCTGATGATAGGCAATTCGGAAGTAGAGAACGAGATTCTAATGCTCAAATCCAAGCGTTTGACTGCTATTGTAGTCGACAAACTTGATCTGGATGTATCCATATACAAACAAGGTTTTTGGCGCAATGAATCGTTGTATGGCAATAGCCCCGTAAGTATTCAGATTACTGACAGGGATTCTACGGAGAACTATTCCTTTAGGATTCAGATCAATGATGCACATTCTTTTCAGCTGACCCATTTCGAGCAGAAAGAGCGTAATGGGATAGGCGATATCAAAATAGACGGCTCTTTTGGTCGGCCTATTGCAACTCCTGTCGGGGAACTAAAACTGAATACGACACTCTTCTTTGCCGATTCATGGAAGGGAGAAGTGCTATATGTGACGAAAGAGAATACTCGTAAAGTGGTAGAGCGTTACAATCAGGATCTGCAGGTGTCATTGGCAGACAAGAAGGCTACGATAGTCAATTTGTCATTGAAAAACGAAGACTTGGATCGTGCGAAGAATTTCATCGATGCCCTTATCGCTTCGTATAACGACGATGTCATGAACGACAAGAAGAGTGTCGCTGTCAGTACGGCTGCTTTCATCGATGAACGTTTGGCCATGATCGGCGGCGAGCTCGGCACGGTAGATACGGAGATCGAAACGTTTAAGAAAAGGAATAATATCACCGATATCTCTACCGATGTAGGCACATATCTCAAGAGCAGTGCCGATCTGCAGAAAGACCAGCTTATTGTGGAGCGAAACCTTTCTTTGGCCAAGTACATCCAGTCATTCTTGAGACAAACCAGTACGGATAACGAACTCATGCCTGCCAATTTGGGCTTGACGGAAAGAGGAATTGACAACAGTATAACGCTGTACAACGAACTTAAGCTCAAATATGACCGATTGAAACAAAGTTCAAGTGAGAATAGTCCTGCAGTACAAGAGGTGGGTATGCAGCTCGTAGCGATGCGGAAATCGATCAATGCGGCCGTCGACAACTATATCAAGACCCTGAACTTGCAACTCCGGGAGGTGAACAAAGAAATGTCCCGGACGAAAGAGCAGATCAGTGCTGTACCTACTCAGGAGAAGATCATGTCTACGATCCTGCGCCAGCAGAAAATCAAGGAAGAATTATACCTGTATCTTCTCAACAAACGAGAAGAGAACGCTCTTCGTTTGGCTATCACCGAGAGTAATGCCAAGACCGTCGATTCTGCTGATGGTTCATCGGAACCCATCTCTCCTCGTAAGCCGGTTATCTTTTTTGCGGCATTCTTGCTTGGATTAGTCCTCCCTTCCACTTTCATCTATGTGAAGATGCAGTTCGACAAGTCGGTACGAGGTCGTAAAGATCTTGAAGGCTTGCTCATACCATTCTTGGGTGAAATACCTACTTATTCCGGTGAGCGAAGCGAAGAAGATCTGGACGTGGTGGTAAAACCGGAAAGTCGCGATTCGGCCAGTGAGGCATTCAGAATACTACGTTCTAATATGGAATTCATGCGCGTCAAGTCGCACGATCTTAAGGCGGTGATGTTCACCTCTGCCAATCCGGAATCGGGAAAATCATTCATGACAGTAAACTTGGCTATTTCAATAGCTCTTACCGGCAAGAAAGTAATTGTCGTGGATTTGGATATCAGAAAGGGTTCTCTTTCTAAACGATTGGGCTTGGGAAATATCGGCGTCACGGATTTCTTATATAACAACAGCATTTCTGTCGATAGCTTGATTACGAAATTTCCTCAAAATGAGAATTTGGATTTGGTTTTAGCAGGTTGCATTCCCCCCAATCCTGCAGAGCTACTGCTGTCGGATCGACTGGATTATTTAATAAAAGAGCTTAAGAGCCGATACGACTATGTTTTCTTGGATTCCGTCCCCGCAATGTCGGTAGCGGATGCCATGATCACCAATAGAGTTGCCGATCTGACTATCTATATCATACGTCAAGGAGTATTAGACAGACGCTATCTCGGCGAGATAGAACGACTGTACACAGAAAATAAGTTTACAAACATGTGTCTCGTCTTGAATGACGTGTCTTACTCCGGCTCAAGAGGTACATATGGCTATGGTTATGGCTACGGTTACGGCAACAAGGAGTATGGCAAACAAGGCAAGAAACTCCGTCGTCGTTCTGCCAAGAAGACGAAGAAATTCAAGATTGGCCCCATGAAGAAGAGC","8.90","4.91","92727","MNLNEDSKNTFTRQGRSYISDTEDTAFFSLEEFFLSLLTSWKWIVASVLACLLIAYIYIQRQSPIYHAQATVLIKSAEKSGATSGLQQFQELGLMIGNSEVENEILMLKSKRLTAIVVDKLDLDVSIYKQGFWRNESLYGNSPVSIQITDRDSTENYSFRIQINDAHSFQLTHFEQKERNGIGDIKIDGSFGRPIATPVGELKLNTTLFFADSWKGEVLYVTKENTRKVVERYNQDLQVSLADKKATIVNLSLKNEDLDRAKNFIDALIASYNDDVMNDKKSVAVSTAAFIDERLAMIGGELGTVDTEIETFKKRNNITDISTDVGTYLKSSADLQKDQLIVERNLSLAKYIQSFLRQTSTDNELMPANLGLTERGIDNSITLYNELKLKYDRLKQSSSENSPAVQEVGMQLVAMRKSINAAVDNYIKTLNLQLREVNKEMSRTKEQISAVPTQEKIMSTILRQQKIKEELYLYLLNKREENALRLAITESNAKTVDSADGSSEPISPRKPVIFFAAFLLGLVLPSTFIYVKMQFDKSVRGRKDLEGLLIPFLGEIPTYSGERSEEDLDVVVKPESRDSASEAFRILRSNMEFMRVKSHDLKAVMFTSANPESGKSFMTVNLAISIALTGKKVIVVDLDIRKGSLSKRLGLGNIGVTDFLYNNSISVDSLITKFPQNENLDLVLAGCIPPNPAELLLSDRLDYLIKELKSRYDYVFLDSVPAMSVADAMITNRVADLTIYIIRQGVLDRRYLGEIERLYTENKFTNMCLVLNDVSYSGSRGTYGYGYGYGYGNKEYGKQGKKLRRRSAKKTKKFKIGPMKKS","476019 473554","TIGR ID: PG0436","capsular polysaccharide transport protein","Inner membrane, Outer membrane, Cytoplasm","This sequence is highly similar to BT0061, a possible tyrosine kinase ptk.Residues 42 to 743 share 24% identity with dbjBAA04777.1 (D21242) ORF6 in Klebsiella pneumoniae. Residues 43 to 746 share 22% identity with gbAAG24806.1 (AF285085), an unknown protein in Salmonella typhimurium. Residues 42 to 743 share 22% identity with gbAAD21564.1 (AF104912), a putative transmembrane protein Wzc in Escherichia coli.","
InterPro
IPR003856
Domain
Lipopolysaccharide biosynthesis
PF02706\"[26-271]TWzz
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[602-776]TG3DSA:3.40.50.300
SSF52540\"[602-774]TSSF52540


","BeTs to 9 clades of COG0455COG name: ATPases involved in chromosome partitioningFunctional Class: DThe phylogenetic pattern of COG0455 is AMTK-QVcEBR-UJ--OL---Number of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","Residues 614-743 are 39% similar to a (PROTEIN ATP-BINDING PLASMID REDUCTASE IRON-SULFUR 4FE-4S) protein domain (PD000159) which is seen in YC06_KLEPN.Residues 437-557 are 22% similar to a (PROTEIN PUTATIVE TRANSMEMBRANE CHAIN) protein domain (PD002891) which is seen in AMSA_ERWAM.Residues 43-335 are 20% similar to a (PROTEIN TRANSMEMBRANE PUTATIVE) protein domain (PD010019) which is seen in P76387_ECOLI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Jun 16 14:52:13 2004","Wed Jun 16 14:52:13 2004","Wed Jun 16 14:52:13 2004","","Tue Feb 27 12:47:09 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 33 to 273 share 20% identity with PG0048, a hypothetical protein.","Tue Feb 27 12:47:09 MST 2001","Wed Jun 16 14:52:13 2004","No significant hits to the PDB database (E-value < E-10).","","","Residues 26 to 271 (E-value = 8.4e-07) place PG0399 in the Wzz family which is described as Chain length determinant protein (PF02706)","Thu Nov 20 17:55:12 2003","34540258","","","Xu,J., Bjursell,M.K., Himrod,J., Deng,S., Carmichael,L.K.,Chiang,H.C., Hooper,L.V. and Gordon,J.I.A Genomic View of the Human-Bacteroides thetaiotaomicron SymbiosisScience 299 (5615), 2074-2076 (2003)PUBMED 12663928","","Thu Nov 20 17:55:12 2003","1","","","PG0436" "PG0400","476967","476047","921","ATGAATAAATATCATTCTCAAAGCGTTTTAGAGGTCGGCAAAATTGGGATTGTGATTATCTTTGCGCCCATAGTACGGAATGTACATCAACAACCCCCTTTTTTAAGCCATAAATCAATTATGCGTATTGTCAGTAATTTTTTGTTCGTCTCTTTTTCGGTTTTGCTTTTTGCATCATGCCGTTCCCAGCGAGAAAAGGTCGTTTACCTGCAAGATATCCAAACTTTTAATCGGGAGATTATCGCTAAACCATATGACGTAAAAATTGAGAAGGACGATGTGCTGAACATCCTTGTCAGCAGTAGAGACCCGGAGCTTTCAACGCCCTACAACCAAGTGTTGACCACTCGTGCACTGGCCCGCAACGGCTATGGAACGAACTCGAACGAAGGCTTCCTGGTCGATTCGAAAGGGTACATCAATTATCCTATTTTAGGCCAGATCTATGTAGAGGGCCTTACTCGTACCGAACTGGAGAAGGAGATACAGAAGAGGATTATTTCCAGTGGATTTATCAAGGATCCTACGGTAACGGTGCAGCTTCAAAATTTCAAGGTGTCGGTTTTGGGAGAGGTGAATCATCCGGGTTCGATGTCGGTAAAAGGAGAGCGAATAACTCTTTTGGAAGCGATCGGAATGGCCGGAGACCTGACAATCTATGGTCGCCGCGATCGGGTTTTTGTGATTAGAGAAACCGATGGGCATCGCGAGGTTTTCCAGACGGATCTCAGAAAGGCCGACTTGCTCGCAAGCCCCGTGTACTATCTGCATCAGAACGACGTCATCTATGTGGAGCCGAACGACAAGAAAACACAGATGAGCGAGATCAACCAGAATAATAACGTAAACGTATGGCTGAGTGTTACCTCCACTTTGGTATCCATTTCCACGCTGACGATTACGATAATAGATAAGACCAAA","9.50","4.41","34799","MNKYHSQSVLEVGKIGIVIIFAPIVRNVHQQPPFLSHKSIMRIVSNFLFVSFSVLLFASCRSQREKVVYLQDIQTFNREIIAKPYDVKIEKDDVLNILVSSRDPELSTPYNQVLTTRALARNGYGTNSNEGFLVDSKGYINYPILGQIYVEGLTRTELEKEIQKRIISSGFIKDPTVTVQLQNFKVSVLGEVNHPGSMSVKGERITLLEAIGMAGDLTIYGRRDRVFVIRETDGHREVFQTDLRKADLLASPVYYLHQNDVIYVEPNDKKTQMSEINQNNNVNVWLSVTSTLVSISTLTITIIDKTK","476967 476047","TIGR ID: PG0437","conserved hypothetical protein (possible outer membrane protein)","Outer membrane, Cytoplasm","Residues 64 to 278 share 30% identity with emb|CAA54880.1| (X77921), an outer membrane protein in Erwinia amylovora.Residues 85 to 284 share 28% identity with gb|AAG57122.1|AE005432_3 (AE005432),a putative polysaccharide export protein in Escherichia coli O157:H7.Residues 83 to 268 share 29% identity with gb|AAK03100.1| (AE006142), the Wza protein in Pasteurella multocida.","
InterPro
IPR003715
Family
Polysaccharide export protein
PF02563\"[131-218]TPoly_export


","BeTs to 4 clades of COG1596COG name: Periplasmic protein involved in polysaccharide exportFunctional Class:  MThe phylogenetic pattern of COG1596 is -----qvcE------------Number of proteins in this genome belonging to this COG is 1","***** BP03347 (TRANSPORT PROTEIN POLYSACCHARIDE O) with a combined E-value of 3.9e-09. BP03347B 134-166 BP03347C 187-196 BP03347D 203-230","Residues 85-268 are 29% similar to a (PROTEIN PRECURSOR SIGNAL TRANSPORT) protein domain (PD003347) which is seen in WZA_ECOLI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Feb 27 12:52:11 MST 2001","Tue Feb 27 12:52:11 MST 2001","Tue Feb 27 12:52:11 MST 2001","Tue Feb 27 12:52:11 MST 2001","Tue Feb 27 12:52:11 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 27 12:52:11 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 76 to 218 (E-value = 3.9e-09) place PG0400 in the Poly_export family which is described as Polysaccharide biosynthesis/export protein (PF02563)","Tue Feb 27 12:52:11 MST 2001","34540259","","","","","","1","","","PG0437" "PG0401","477024","477971","948","TTGTGTTTGACGGGCGGAAAATGCCGAGTGGTTTTTGTTAACTTTGTTCATCCTCAATCATTAACAGCTTCGCTTATGAAAAAGATATTATCGACGGTGATCCTCATTTGTATTTTATCCTCTTTCGGTGTGGCGCAAGTGGGAGTGCCACGAATCGATGATATGAGAGGAATGCGTATGGACACCGTGTCTAAGAAAATAAAGGATTATGCACAACGGCGGTTCTTTTATAAGGTGGTTTTTGTGGAAGATACCCTGAAGCGAGAAAAGAAAACCGAGGCGCAGTGTGTGTTGGAGATCGGACGGCACGGCAGCAGCTTCAAGGATTTGTATCAGTTAGCCTGGGATTCTTTGAACGATGCCGTTACCCGGCGAAAAGGTTCGATGATGGAGCTATTCACTGAGGGTGCCGGGTTGGTGAAAAAGATAAAGTGGAGAATAGTCCTGCTGAAAGGGTATCCTGAAGGAGCGGACCGGCATCAACAAGAGGTGCCATTGACAGGTCGGTATGAGTATGAATGTCCGTCGCCGTCTTTCGATTGGCAGATCGGGGAAGAGACCGAAGAGATCATGGAATACACTTGCCGAAAGGCCACCTGCCACCACAGCGGACGGGATTATACGGCTTGGTATACCGAGGATATTGCCCTCTCGGATGGGCCGTACATTTTTCGGGGATTGCCCGGCCTGATTGTGGCCATCGCTTCGGATGATGGGGAATATGCATTCGAACTTAATGGAATGCAGGGGGAGATTACTTTCCCCTCACCTATATTTCTGTACGACAAAAAGGTGCAAAAGTATTCGCGCGAAGAAGTACGCAAGATTATCCGAAACATTTCGGAGAATTATTCCGAGACCATCATCAATCAGGGAAGATTCAGGCTTAAGAATCCGGAGGATATTCAGCGTATCAGAAATTTGCCGTACAATCCCTTGGAGAAAGAA","8.10","3.90","36446","LCLTGGKCRVVFVNFVHPQSLTASLMKKILSTVILICILSSFGVAQVGVPRIDDMRGMRMDTVSKKIKDYAQRRFFYKVVFVEDTLKREKKTEAQCVLEIGRHGSSFKDLYQLAWDSLNDAVTRRKGSMMELFTEGAGLVKKIKWRIVLLKGYPEGADRHQQEVPLTGRYEYECPSPSFDWQIGEETEEIMEYTCRKATCHHSGRDYTAWYTEDIALSDGPYIFRGLPGLIVAIASDDGEYAFELNGMQGEITFPSPIFLYDKKVQKYSREEVRKIIRNISENYSETIINQGRFRLKNPEDIQRIRNLPYNPLEKE","477024 477971","TIGR ID: PG0438","conserved hypothetical protein","Cytoplasm","This sequence corresponds to gi:34396572 in Genbank.","
InterPro
IPR005901
Family
Porphyromonas gingivalis protein
TIGR01200\"[24-316]TTIGR01200: Porphyromonas gingivalis paralog
noIPR
unintegrated
unintegrated
signalp\"[1-45]?signal-peptide
tmhmm\"[29-49]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Sat Feb 24 21:25:05 MST 2001","Wed Mar 2 11:01:10 2005","Sat Feb 24 21:25:05 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 22 to 316 share 61% identity with PG0402.Residues 30 to 316 share 30% identity with PG1664.","Sat Feb 24 21:25:05 MST 2001","Sat Feb 24 21:25:05 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Sat Feb 24 21:25:05 MST 2001","34540260","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Wed Mar 2 11:01:10 2005","","1","","","PG0438" "PG0402","477971","478867","897","ATGAAAACAAATAAAACACTCAGCATGAAAAGGACACTTTTGTTCCTCGCATCCTGCTTTTTTATGAGTATGAGCTTCATACAGGCACAGGTGCCACGTATCGTGGGCGCAGAAGGGATGCCGGTAGATACTGTGCCCAAGAGGGTGGAGGACTATACCAAACGGCGATTTTTTTACAAAGTCTCTTTTGTGAAAGATACCACGAGGCGAGACAAAGAAACCCAAGCACAGTGTGTATTGGAAATAGGGCAGCGAGGGAGTTGCTTCAAAGACTTTTACGAGTATGCAGCGGACTCGGTGAATGATGCCGTAGCTCGGAAGAAAGGGACTGCTATGGAGATCTTTTCGAAAGCTTATGATTACGTCAAGAAGACCCAATGGCGGACTCCCGTACTTAAAGGCTATCCATCGGGACAAGATTATCATCAATACGGAGATCCGATAGTCGGTTCTTATGAATACGGTTGTCCGTCGCCGTCTTTCGATTGGCAGATCGGGGAAGAGACCAAGGAGATCATGGAATACACTTGCCGAAAGGCCACCTGCCACCACAGCGGACGGGATTATACTGCTTGGTATGCCGAGGATATTGCCCTCTCGGATGGGCCGTACATTTTTCGGGGATTGCCCGGCCTGATCGTCGCTATCGGTTCGGATGACGGAGAGTACGTATTCGAATTGAACGGAATGCAGGAGATTACATTTCCGTCTCCGATTTATCTCAAGAAAAATGCCTTTACGAAAGTCGGCTCGCGTGAAGAGATGCGCAAAACGATTCGTAATATCCACGAGCATTATGCCGAAGTCGTGGCCAATTCGCCGGCTTTTGTCAATTCCCCGATACCGGTAGACTTTTCTCATCTGCCACCTCAGCCGTTTAATCCATTGGAGGAGGAA","6.80","-0.82","34187","MKTNKTLSMKRTLLFLASCFFMSMSFIQAQVPRIVGAEGMPVDTVPKRVEDYTKRRFFYKVSFVKDTTRRDKETQAQCVLEIGQRGSCFKDFYEYAADSVNDAVARKKGTAMEIFSKAYDYVKKTQWRTPVLKGYPSGQDYHQYGDPIVGSYEYGCPSPSFDWQIGEETKEIMEYTCRKATCHHSGRDYTAWYAEDIALSDGPYIFRGLPGLIVAIGSDDGEYVFELNGMQEITFPSPIYLKKNAFTKVGSREEMRKTIRNIHEHYAEVVANSPAFVNSPIPVDFSHLPPQPFNPLEEE","477971 478867 [Shadowed by 525]","TIGR ID: PG0439","hypothetical protein","Periplasm, Inner membrane, Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR005901
Family
Porphyromonas gingivalis protein
TIGR01200\"[8-299]TPorph_ging


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Sat Feb 24 21:22:19 MST 2001","","Sat Feb 24 21:22:19 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 12 to 263 share 30% identity with PG1664.Residues 157 to 259 share 36% identity with PG1307.","Sat Feb 24 21:22:19 MST 2001","Sat Feb 24 21:22:19 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Sat Feb 24 21:22:19 MST 2001","34540261","","","","","","1","","","PG0439" "PG0403","479455","477932","1524","ATGTTCCGGGAGGNCCAGATTGTAGCGGTTTTGCAGCATGTCTACGCCTTCGATATACATATGTGTGATAGGTTCGCCCTGATATTTGACGAGGCCGTTTGCCGAGACCTCTATTCCCGGCAATTTGCGCAGCAGATCGGCCAGATACCGATCGTCCGGCCCCACGAAAGCCGCAGCCGAATAGGCAATCGTATCTCCCAGCTTGCGTACCGGTTCGGCGCGTACCACCACTTCCTTGAGCTTGACGTCGGACGGCACCAAAGCGAAAAGCAGCGGAGGAGCAGCCGCATCGATGGCTTTGCTCATCTTCCTATACCCCATATATCTTACGCTAAGGAGTTTTCCGCCGGCTTTTTTCTCCAGAGAGAACGAGCCGTCGGCTTTCGAGAGGACGAAGGCAAGCGGTTTGCCGGAGGCATCCATGAGTTGGCACACTGCCCCGGCAAGAGGCTCCTGGCTCTCGGCATCTATCACACGACCGGCAAGCATTTGTCCGGTCGCTTCCTGAGCAACGACAGGCAACAGCCCCGCCACGCACAGCCACAAATACGCCAAAATCGAAGTGACAGCCCTATTCATCATGCTTTATTCCTCCTCCAATGGATTAAACGGCTGAGGTGGCAGATGAGAAAAGTCTACCGGTATCGGGGAATTGACAAAAGCCGGCGAATTGGCCACGACTTCGGCATAATGCTCGTGGATATTACGAATCGTTTTGCGCATCTCTTCACGCGAGCCGACTTTCGTAAAGGCATTTTTCTTGAGATAAATCGGAGACGGAAATGTAATCTCCTGCATTCCGTTCAATTCGAATACGTACTCTCCGTCATCCGAACCGATAGCGACGATCAGGCCGGGCAATCCCCGAAAAATGTACGGCCCATCCGAGAGGGCAATATCCTCGGCATACCAAGCAGTATAATCCCGTCCGCTGTGGTGGCAGGTGGCCTTTCGGCAAGTGTATTCCATGATCTCCTTGGTCTCTTCCCCGATCTGCCAATCGAAAGACGGCGACGGACAACCGTATTCATAAGAACCGACTATCGGATCTCCGTATTGATGATAATCTTGTCCCGATGGATAGCCTTTAAGTACGGGAGTCCGCCATTGGGTCTTCTTGACGTAATCATAAGCTTTCGAAAAGATCTCCATAGCAGTCCCTTTCTTCCGAGCTACGGCATCATTCACCGAGTCCGCTGCATACTCGTAAAAGTCTTTGAAGCAACTCCCTCGCTGCCCTATTTCCAATACACACTGTGCTTGGGTTTCTTTGTCTCGCCTCGTGGTATCTTTCACAAAAGAGACTTTGTAAAAAAATCGCCGTTTGGTATAGTCCTCCACCCTCTTGGGCACAGTATCTACCGGCATCCCTTCTGCGCCCACGATACGTGGCACCTGTGCCTGTATGAAGCTCATACTCATAAAAAAGCAGGATGCGAGGAACAAAAGTGTCCTTTTCATGCTGAGTGTTTTATTTGTTTTCATTCTTTCTCCAAGGGATTGTACGGCAAATTTCTGATACGC","10.80","39.90","128393","MFREXQIVAVLQHVYAFDIHMCDRFALIFDEAVCRDLYSRQFAQQIGQIPIVRPHESRSRIGNRISQLAYRFGAYHHFLELDVGRHQSEKQRRSSRIDGFAHLPIPHISYAKEFSAGFFLQRERAVGFREDEGKRFAGGIHELAHCPGKRLLALGIYHTTGKHLSGRFLSNDRQQPRHAQPQIRQNRSDSPIHHALFLLQWIKRLRWQMRKVYRYRGIDKSRRIGHDFGIMLVDITNRFAHLFTRADFRKGIFLEINRRRKCNLLHSVQFEYVLSVIRTDSDDQAGQSPKNVRPIREGNILGIPSSIIPSAVVAGGLSASVFHDLLGLFPDLPIERRRRTTVFIRTDYRISVLMIILSRWIAFKYGSPPLGLLDVIISFRKDLHSSPFLPSYGIIHRVRCILVKVFEATPSLPYFQYTLCLGFFVSPRGIFHKRDFVKKSPFGIVLHPLGHSIYRHPFCAHDTWHLCLYEAHTHKKAGCEEQKCPFHAECFICFHSFSKGLYGKFLIR","479455 477932","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No hits in GenBank by gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","Tue Feb 6 13:21:53 MST 2001","Tue Feb 6 13:21:53 MST 2001","","","Tue Feb 13 17:39:00 MST 2001","Tue Feb 13 17:39:00 MST 2001","Tue Feb 6 13:21:53 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 13 17:39:00 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG0404","479454","481505","2052","ATGCCTCAAGAGGCGGTGAAAACAGTGGAGGTGTTGGAGGGGCATCAGCACATCAAAACGCTGCGGGAGACAGTGCCGGAGAAAAGGGCTGCACTCAATATCAAACTCAAAGAACGCTTCAAGGTGCGTCCCTTCGGAGAGGTAACGGCCGGCGGAGGCTTCCCGGAGCTGTTTACAGGCCGTCTCTTCGGAATGCAGATAAGTCCGAAGGTGCAAGCCCTGCTAACGGCCAAGGGCAACAATACGGGCAACTCCGTGAACGAAGAGGCCGTTCGGCTCTTGGATGAGGACGGTATCATGTACAATGCATCCGATCGCGAAGAGGTGCTGACCCATGCCGGCTTTCGCTCTCTGCCCATGAGCCAAAGTCGGTATCTGATGAATCGGTCGGGGACGGGGAGCTTCAGCATGGCGATCCCCTTGGGGGCGGATAGGACCCTTACCGCCAATGCCTCGCTGCTGACTGACAGACGGGAGCAGACGATCTTGCAGGAGCAGACCTATAATCTGAGTACGCAGCAGGAGGTCTCCGTTCGGGAAGACCGCTATACAAGGAACAGGTCCCGCAGTGCGCAAGCCGATTTCTCATTCGAAAACAATGCTTCCCGTTTCTATCTGAAAGACGACCTGAAGCTCTCCCTCGGTTCTGATCGGGAACGGGTGCGGCTGTCTACGAATACGGCCGATTGTTTGCAGACGGGCGAGTCGCTCCCCCGTGTCGTGCAAAACAATCTGACGGCGGTGCTCAAAGACGACCGGCGCAGCTATCGTTTCTTTTCCTTCGGCAAGTATATGGCCCGGGATGAAAATATGTTGCTGAGCGATCCGGCAACGGGGGCCTTGCAAATGGATCCGGACGTGCGGATGCACGATTTGGCCACACGAAACGGCCTCGAATCCGATTTTCGTTTCGGCCGCGTGGCACTGCATTCGACCACGACGATGGGCTATCGAGGGGAGCAGATCGACTACCGCTCCTCGCTTCCGCAACCCGATGTGGAGGACTTCGGCGGCACTTACGGTTACCATGCCGGCCACTGGGAGCTGAGCGAGAAACCCTCGTTTTCCTATCGTTTCGGCCGCACCTATCATCGTCTCGACCTGCCTGTCGCGTGGCATCTGTTCACTTTGAACGATAAATCCGCAGCAGAACGGCGGCAGGAGAGCCGAGCCGCCTTTTCGCCGGCTCTCTCGCTGCACTGGGAGCCGGGGGCGGCATGGAAGCTGAATGTCTCCGTCCGCCACGGTCATTCTTTTGGCGGTTTGGAGGGATTTCGCTCCGGCTATACGCGCAGGGACTACCGCACCTACCTGCTTCCTTCGGGCTTCATGAGCGAGAGGCGATATTCGGGGGCAAACTTTTCGGTCGACTATGGCGACGTGCTGCACCTGTTCTATTTTCATCTGAAAGCCGGATATTCGCGCAGTCGCTCCAACGAATTGCCCCACTTCGACTACACGGCGGAACATAATATCATCCGTTACGAGCGCTATTGGCACGATCTTAACGCTTTTTTCGCCGATATGCGTCTGAGCAAGTTTTTCTTCCCCGTCAAGGCCAATGCGGTATTGAACGTGCGTTACAGCCGTTCGGAGTCGCTCCTGAAACAGTCCGGACACCTCATCGGCGGACACGCCAACAGCCTTTCCTCCGAGCTTACTCTCAGCAAGCGATGGGGCGGGTGGCTATCCGTCTCCTACAACCTCGCGGCGGATTATTCCTGGATGGAAACGGGAGCCAACGCTCATCGCCGGTTGCCCCAATACCGGCATACGGCCCGTCTGACCTTGCTGCCGATCCCCCGTCTGTCGCTGCGCATGGCAGGCGAATATAACGCCACGACTCTGGAGCCGGGGCATGTACATGAGGATGTTTTTTTCGACTGCGAAGCACGCTACAGTTTCGATAAGGTTTGGGAAGTATCCGTTTCGATGCGCAATCTGTTCGATCGTCGCATGTATCTTATCCGTCAACTGACGGAGTACAACGCTTTTTCCACCGCTATCCCCATTCGCGGTCGCGAACTGCTTGCCACAGTCTTTTTCCGCTAC","10.10","15.50","78512","MPQEAVKTVEVLEGHQHIKTLRETVPEKRAALNIKLKERFKVRPFGEVTAGGGFPELFTGRLFGMQISPKVQALLTAKGNNTGNSVNEEAVRLLDEDGIMYNASDREEVLTHAGFRSLPMSQSRYLMNRSGTGSFSMAIPLGADRTLTANASLLTDRREQTILQEQTYNLSTQQEVSVREDRYTRNRSRSAQADFSFENNASRFYLKDDLKLSLGSDRERVRLSTNTADCLQTGESLPRVVQNNLTAVLKDDRRSYRFFSFGKYMARDENMLLSDPATGALQMDPDVRMHDLATRNGLESDFRFGRVALHSTTTMGYRGEQIDYRSSLPQPDVEDFGGTYGYHAGHWELSEKPSFSYRFGRTYHRLDLPVAWHLFTLNDKSAAERRQESRAAFSPALSLHWEPGAAWKLNVSVRHGHSFGGLEGFRSGYTRRDYRTYLLPSGFMSERRYSGANFSVDYGDVLHLFYFHLKAGYSRSRSNELPHFDYTAEHNIIRYERYWHDLNAFFADMRLSKFFFPVKANAVLNVRYSRSESLLKQSGHLIGGHANSLSSELTLSKRWGGWLSVSYNLAADYSWMETGANAHRRLPQYRHTARLTLLPIPRLSLRMAGEYNATTLEPGHVHEDVFFDCEARYSFDKVWEVSVSMRNLFDRRMYLIRQLTEYNAFSTAIPIRGRELLATVFFRY","479454 481505","TIGR ID: PG0441","hypothetical protein","Outer membrane, Cytoplasm","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
G3DSA:2.40.170.20\"[552-684]Tno description


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Jul 13 14:47:11 2004","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540262","","","","","","1","","","PG0441" "PG0404.1","481867","481505","363","ATGCATTTGATGATTTTGTTGCCGAAATTCCTTGCCGCAGGTATGCATTGTGTAATTTTGTCGACGAAATTCCTTGCTGCAAGCTTGCAAAAGGTCTGCTTGGCAACAAAATTGCTTATTGCAGCTTGCAGGAAGCGATTTTGTTGCCGAAATTCATGTTTGCAGCTTGCAGGAAGCGATTTTGTTGCCGAAATTCATGTTTGCAGGTCGGATTCTATGAATTTTGTTGCCAAGATTTCGCCTTGCATAGCTGCAGCGAGTAATTTCGTCGACGAAATTACTCGCCGAAAAGAAAAATCGTACCGAAATTCAGAAAGAATCTCAATACGATCCTCGGCAGCTATACCGAATAAAGAAAATCAG","","","13419","MHLMILLPKFLAAGMHCVILSTKFLAASLQKVCLATKLLIAACRKRFCCRNSCLQLAGSDFVAEIHVCRSDSMNFVAKISPCIAAASNFVDEITRRKEKSYRNSERISIRSSAAIPNKENQ","","NO TIGR ID corresponds to this gene.","hypothetical protein","Periplasm","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-35]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Sat Feb 24 21:18:47 MST 2001","","Sat Feb 24 21:18:47 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 40 to 68 share 62% identity with PG0612.1","Sat Feb 24 21:18:47 MST 2001","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Sat Feb 24 21:18:47 MST 2001","","","","","","","1","","","" "PG0404.2","481973","481608","366","GTGGCAAAGTTTCTTATCGCCGTTCGGCAATGGAAATTTTATGTACAAAGATTGATTGCCGAAAGCATGTATTTGAAATTTCTCTATCGAAATTCTTGGCTGAAATATGCATTTGATGATTTTGTTGCCGAAATTCCTTGCCGCAGGTATGCATTGTGTAATTTTGTCGACGAAATTCCTTGCTGCAAGCTTGCAAAAGGTCTGCTTGGCAACAAAATTGCTTATTGCAGCTTGCAGGAAGCGATTTTGTTGCCGAAATTCATGTTTGCAGCTTGCAGGAAGCGATTTTGTTGCCGAAATTCATGTTTGCAGGTCGGATTCTATGAATTTTGTTGCCAAGATTTCGCCTTGCATAGCTGCAGCGAG","","","14350","VAKFLIAVRQWKFYVQRLIAESMYLKFLYRNSWLKYAFDDFVAEIPCRRYALCNFVDEIPCCKLAKGLLGNKIAYCSLQEAILLPKFMFAACRKRFCCRNSCLQVGFYEFCCQDFALHSCSE","","TIGR ID: PG0442","hypothetical protein","Cytoplasm","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-20]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Tue May 29 18:57:39 MDT 2001","","Sat Feb 24 21:15:58 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 32 to 122 share 41% identity with PG0272.2.","Sat Feb 24 21:15:58 MST 2001","Tue May 29 18:57:39 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue May 29 18:57:39 MDT 2001","34540263","","","","","","1","","","PG0442" "PG0405","482162","483205","1044","TTGTTTCACCTAAAAACTTTTTCTGATATGGTCGAATCCATACAAATTACTTCTTTTCACAATGCTGAGCTTCTGAATTTTATGATCGATGAGGTCAAAGATGCTCGCACTCTCAGTAAAAATGAGATTATTCCTACTTTGGATGAGCTGGACAAGGTGCTGGCTACTTTCAAAAAAGGTATTGCCATGAACAAGACAAGCGAATACTCGGAGAAAATAACCGCTCTCGATGCTGTTCGCAGCAAAGCGTTTCGGAATTTTATAGGCTGTATCCAGGGAGAGACTCACAGACCCGAAGAAGACCATCGCGAAGCAGCGAGACGTCTGTTTATTCTGCTCAAACCCTATAATAACCTGAATAGAAAGAGCTATCGGAACAAAACCGAGCTGATGTACAAGCTGGTGGAGGTATTGCGAAGCGATAAACATGCTTCCGACGTACAAACCGTAAATGTATCTGCTTGGATCGATAAGATGGATAACGCGAATAAGGCATTCGATCAGCTGTTCGACCTGAGAGACAATACGGAGGGTGAGCGTCTGATCATCAATAACCGTGAAATGCGGCATAGGATAAGGCTGCACTACAATCGCCTCCTTGAAATCATAGAAGCCCTGCTCGTCTTGCATGCGGACAGGCCGTTGGAGGGATTCGTGGGCCGTCACAATGAGCGAGTGGCCAAGATGAAAGCACTCTTTGCCCTTCGTGCTTCCATCGGAACGAAATCGACCCGGGAGAAGCGGGATGTATTGCGCAGCCTTGCTATCGGTCTTGGCTGGTCGTTACCTGCCGGGCAGGAAGATTTTGAATTTTTTGCCGGTACGCGTATCCTTCATCCGACCGAACATCGCTGGTACTGTCTCGGCAAGAAGGATAATATAATTACTCTGGTTCTATACAAAGGGAAGAAAAAACAATCCTCATCCTCTTCTTCCAATAGCTCAGTCGATCTGCCCGATCTTCCCGCTCCTCCTCCATCCCAGCCCGATAACGGTTCGTCCGGAGGCGGCGGCGAGCAAGGCGGCGGCGGAAGCGGCGGTCTG","9.80","8.58","39307","LFHLKTFSDMVESIQITSFHNAELLNFMIDEVKDARTLSKNEIIPTLDELDKVLATFKKGIAMNKTSEYSEKITALDAVRSKAFRNFIGCIQGETHRPEEDHREAARRLFILLKPYNNLNRKSYRNKTELMYKLVEVLRSDKHASDVQTVNVSAWIDKMDNANKAFDQLFDLRDNTEGERLIINNREMRHRIRLHYNRLLEIIEALLVLHADRPLEGFVGRHNERVAKMKALFALRASIGTKSTREKRDVLRSLAIGLGWSLPAGQEDFEFFAGTRILHPTEHRWYCLGKKDNIITLVLYKGKKKQSSSSSSNSSVDLPDLPAPPPSQPDNGSSGGGGEQGGGGSGGL","482162 483205","TIGR ID: PG0443","conserved hypothetical protein(possible hemagglutinin protein)","Cytoplasm","Residues 11 to 248 share 21% identity with pir||S52213, HagB hemagglutinin protein in Porphyromonas gingivalis.Residues 12 to 248 share 21% identity with pir||S49156, HagC hemagglutinin protein in Porphyromonas gingivalis.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 11-286 are 21% similar to a (HEMAGGLUTININ PROTEIN HAGB HAGC) protein domain (PD040602) which is seen in Q51828_PORGI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Sat Feb 24 21:13:13 MST 2001","Sat Feb 24 21:13:13 MST 2001","Sat Feb 24 21:13:13 MST 2001","","Sat Feb 24 21:13:13 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 93 to 191 share 48% identity with PG1462.Residues 11 to 346 share 24% identity with PG1721, hemagglutinin HAGB.Residues 12 to 346 share 24% identity with PG1724, hemagglutinin HAGC.","Sat Feb 24 21:13:13 MST 2001","Sat Feb 24 21:13:13 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Sat Feb 24 21:13:13 MST 2001","34540264","","","","","","1","","","PG0443" "PG0406","483397","485373","1977","ATGGAAAACAAACAGACAACGAGCAAGCTACCCGAAAATGCATATCGGGAGCTGAAGCCGGGCGAAGAGTACGAACCGGTGATGCCTGCCGGCAGTACGCCGCGCGAGATTACCTCCTATTCTGTCCTGCTGGGTTTGGTGATGACAGTTATTTTCTCTGCTGCCGCAGCTTATCTGGGGCTGAAGGTCGGGCAAGTATTCGAAGCCGCCATTCCCATTGCCATCCTGGCCGTAGGTATCGGCACCATTTCGGGACGCCGAAATATGCTGGGGCAGAATGTGATCATCCAATCCATCGGAGCCTGCTCGGGCGTCATCGTCGCCGGTGCCATCTTCACGCTTCCTGCTCTTTATATCCTGGGCCTCGAAGCCAGTTTCCTGCAGATATTCCTTTCTTCGTTCATCGGCGGTTGTCTCGGTATATTGCTATTGATTCCTTTCCGCAAATACTTTGTCAAGGATATGCATGGCAAGTATCCTTTCCCCGAGGCCACGGCAACGACGGAAGTACTGGTCACGGGAGAGAACGCAGGCAAACAAATGAAGCTGCTGGTGGCCAGCGGACTCGTGGGCGGTCTGTACGACTTCATCGTGGGCACCTTCGGCTGGTGGACGGAGAACGTTTCCACCCGGCTGGCCGAATGGGGAGCCGTACTGGCCGAGAAGTACAAGCTGGTCTTTAAGGTCAATACCGGAGCGGCCGTCCTCGGCCTGGGCTATATCATCGGTCTGCCTTATGCCACGATCATCTGTGCCGGTTCGTTTCTCGTCTGGTTCGTTATCATGCCCCTTATCGGCTACTTCGCCCCCGGTATGACTCAGGCCATCGGCGACGGTGTGTCGCTGACTATCGGCCTGATGAGCCCTGAGGATATTTTCGCCGTCTATGCGCGTCCTCTCGGCATCGGAGGTATCGCCATGGCGGGTATCATCGGGATCCTGCGCTCGTCCGGAATTATCGGCCGGGCCGTCAAGCTGGCCGGTACCGAATTGACCGGCAAGCGGACGAGTACCATCGATGAGCCTCGCACACAGCGTGATCTCTCGATGAAGTTCATTACGCTGGGCGTCATCGTCGCTTTGGTGGTGACGATGCTTTTCTTCCAGTTCAACGTGCTATTCAACTGGGGACATACGCTGATATCCCTGCTGATCGTATTCATTATTACCTTCCTTTTTACCACTGTGGCTGCCAATGCCATTGCCATCGTGGGCAGCAACCCCGTTTCGGGGATGACCCTGATGACTCTGCTGCTGACCTCCGTGGTTCTCGTCGGAGTAGGCGTAAGCGGCAAGCCGGGTATGACGGCTGCGATGATTATCGGCGGTGTGGTATGTACGGCCTTGTCCACGGCAGGCGGATTCATCACAGACCTGAAGATCGGCTACTGGCTCGGCACCACGCCGAAGAGTCAGGAGAAGTGGAAGTTCCTCGGCGTTCTGGTAGCTTCGGTCACCGTAGCCGGTGTGATGATGATCCTGAACAAGACCTATGGCTTTACGGGCGATCAGGCTCTGGTGGCTCCGCAGGCCAATGCGATGGCAGCCGTGATCAAGCCGCTGATGGAAGGCGGTAATACGCCTTGGATTCTCTATGGCGTAGGAGCTATACTGGCTCTGATCCTGACGAGTATAGGCGTGCCCGCACTGCCTTTTGCACTGGGTATGTTTATCCCGTTACAACTAAATACACCTCTCCTCATCGGCGGACTCGTCAGCTGGTTCGTCAGCACCCGCTCGAAGGACGCTTCTGTCAATAAATTCCGCAAGGAACGCGGTACGCTCATCGCTTCCGGATTCATCGCCGGAGGAGCTTTGATGGGTGTGGTAAGTGCGATCCTCAAATACATGGAGTTCGATGCTTTTGCCCAAGAATGGCACGCCATGGCAGGCGCCGAATGGTTGGCCATCGGCATGTATGCGCTCATCATTCTCTACTTCATCGTCGACAGCATCAGAGGCAAGAAACATGAAGCA","9.70","8.79","69840","MENKQTTSKLPENAYRELKPGEEYEPVMPAGSTPREITSYSVLLGLVMTVIFSAAAAYLGLKVGQVFEAAIPIAILAVGIGTISGRRNMLGQNVIIQSIGACSGVIVAGAIFTLPALYILGLEASFLQIFLSSFIGGCLGILLLIPFRKYFVKDMHGKYPFPEATATTEVLVTGENAGKQMKLLVASGLVGGLYDFIVGTFGWWTENVSTRLAEWGAVLAEKYKLVFKVNTGAAVLGLGYIIGLPYATIICAGSFLVWFVIMPLIGYFAPGMTQAIGDGVSLTIGLMSPEDIFAVYARPLGIGGIAMAGIIGILRSSGIIGRAVKLAGTELTGKRTSTIDEPRTQRDLSMKFITLGVIVALVVTMLFFQFNVLFNWGHTLISLLIVFIITFLFTTVAANAIAIVGSNPVSGMTLMTLLLTSVVLVGVGVSGKPGMTAAMIIGGVVCTALSTAGGFITDLKIGYWLGTTPKSQEKWKFLGVLVASVTVAGVMMILNKTYGFTGDQALVAPQANAMAAVIKPLMEGGNTPWILYGVGAILALILTSIGVPALPFALGMFIPLQLNTPLLIGGLVSWFVSTRSKDASVNKFRKERGTLIASGFIAGGALMGVVSAILKYMEFDAFAQEWHAMAGAEWLAIGMYALIILYFIVDSIRGKKHEA","483298 485373","TIGR ID: PG0444","conserved hypothetical protein","Inner membrane, Cytoplasm","Residues 164 to 570 share 61% identity with emb|CAB46012.1| (AJ243361) hypothetical protein in Prevotella albensis.Residues 23 to 614 share 31% identity with dbj|BAA29435.1| (AP000002), hypothetical protein in Pyrococcus horikoshii.Residues 33 to 613 share 31% identity with gb|AAF85060.1|AE004038_9 (AE004038), an oligopeptide transporter in Xylella fastidiosa.This sequence is similar to BT1086.","
InterPro
IPR004813
Family
Oligopeptide transporter OPT superfamily
PF03169\"[36-615]TOPT
TIGR00728\"[22-619]TOPT_sfam
InterPro
IPR004814
Family
Oligopeptide transporter OPT
TIGR00733\"[36-616]TOligopep_transpt


","BeTs to 4 clades of COG1297COG name: Uncharacterized membrane proteinFunctional Class: SThe phylogenetic pattern of COG1297 is ---Ky-----rh---------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 327-524 are 30% similar to a (PROTEIN RFBA GALE 626AA) protein domain (PD011553) which is seen in O58099_PYRHO.Residues 58-196 are 29% similar to a (PROTEIN 626AA LONG HI0561/560 TRANSMEMBRANE GENE CLUSTER) protein domain (PD017648) which is seen in O58099_PYRHO.","","Thu Jun 14 10:50:26 MDT 2001","","Thu Jun 14 10:50:26 MDT 2001","Thu Jun 14 10:50:26 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 10:50:26 MDT 2001","Thu Jun 14 10:50:26 MDT 2001","","","Sat Feb 24 21:07:41 MST 2001","Thu Dec 4 10:39:29 2003","Thu Jun 14 10:50:26 MDT 2001","","Wed Jun 20 14:08:11 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Sat Feb 24 21:07:41 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 36 to 616 (E-value = 5.5e-10) place PG0406 in the OPT family which is described as OPT oligopeptide transporter protein (PF03169)","Wed Jun 20 14:08:11 MDT 2001","34540265","","","","","","1","","","PG0444" "PG0407","485393","486607","1215","ATGGAACTGAAAGAGAGATTTCTCCGATATGTAGGCTTCGATACGCAAAGCGACGAATCCTCTACCACTTTCCCCTCGACGGACAAGCAATTGGTGCTGCTGCGTCATTTGGCCAAAGAGATGAAGGACCTCGGCCTGTGCGAGGTCGAAATGGACGAGCACGGCTATGTCATGGGCAGCATCCCTGCCTCTCCCGGTTGTGAGCATGCGCCCGTGATCGGATTCATTGCGCATGTGGATACGGCCCCCGACATGAGCGGCAAGGACGTGAAGCCGCAAATCATCAAAAACTATAATGGCGGCGATATTCGTCTGAACGAGGAACTGACTATGCGTGTAGCGGATTTCCCCGAGTTGGCGTTCTTCAAAGGGCATACGCTGATCACTACGGACGGTACCACTCTGCTCGGTGCCGATGACAAAGCCGGTGTGGCCGAAATCATGACGGCTGCCGAGTATCTGCTCGCACATCCCGAAGTCAAGCATGGCAAGATTCGCCTCGGATTTACTCCCGACGAGGAAATCGGTCGGGGAGTGGATCACTTCGATGTCGAGCGGTTCGGTGCCAAGTTCGCTTACACGATGGACGGCAGTATGGAAGGAGAGTTGGAGTATGAGAACTTCAATGCGGCTTCGGCCAAACTGACCGTAAACGGACGCAATATCCACCCCGGCTATGCCAAGGGAAAGATGGTCAATTCGCTGCAGGTAGTGTGCGATCTGCATGCTCTTCTGCCCGAGGCTATGCGGCCGGAGGCTACTGCCGGCTACGAAGGATTTTTCCACCTTATCGGCATCAACGGTTCGGTAGAGAAAGCATCGGCATCTTATATCATCCGCGATCACGACCGCAAACTCTTTGAAGAGAAGAAAGAGCTGATCAAAGCTGCCGTAGACTACATCAACCGCAAGTACGGCTCGGACATCGTGTCGCTCGAACTCAAAGATCAGTATTACAATATGCGAGAGATGGTAGAGCCTCATCCCGAGATTATCGAAAAAGCCATTGCTGCCATGAAGCTTGCCGGCATAACGGCCAAGGTGCAGCCTATTCGCGGCGGTACGGACGGGGCCAGACTCTCTTATATGGGACTCCCGTGCCCGAATATATTTGCCGGTGGGATGAACTTCCACGGCAAGTTCGAATACTGTTCGCTCGACTCCATGCGGCGGGCTGTGGACACGATCTGCCATTTGGCTGCTCTTTGGGCTGAA","5.40","-13.63","44855","MELKERFLRYVGFDTQSDESSTTFPSTDKQLVLLRHLAKEMKDLGLCEVEMDEHGYVMGSIPASPGCEHAPVIGFIAHVDTAPDMSGKDVKPQIIKNYNGGDIRLNEELTMRVADFPELAFFKGHTLITTDGTTLLGADDKAGVAEIMTAAEYLLAHPEVKHGKIRLGFTPDEEIGRGVDHFDVERFGAKFAYTMDGSMEGELEYENFNAASAKLTVNGRNIHPGYAKGKMVNSLQVVCDLHALLPEAMRPEATAGYEGFFHLIGINGSVEKASASYIIRDHDRKLFEEKKELIKAAVDYINRKYGSDIVSLELKDQYYNMREMVEPHPEIIEKAIAAMKLAGITAKVQPIRGGTDGARLSYMGLPCPNIFAGGMNFHGKFEYCSLDSMRRAVDTICHLAALWAE","485366 486607 [Delay by 138 530 146 0]","TIGR ID: PG0445","aminotripeptidase/peptidase T","Cytoplasm","Residues 2 to 400 share 58% identity with pirH69674, an aminotripeptidase (EC 3.4.11.-) in Bacillus subtilis.Residues 2 to 405 share 50% identity with gbAAG55931.1AE005327_1 (AE005327), an aminotripeptidase peptidase T (EC 3.4.11.-) in Escherichia coli.Residues 2 to 405 share 51% identity with gbAAA27183.1 (M62725), the peptidase T in Salmonella typhimurium.This sequence is similar to BT4583.","
InterPro
IPR001261
Family
ArgE/dapE/ACY1/CPG2/yscS
PS00758\"[73-82]TARGE_DAPE_CPG2_1
PS00759\"[137-176]TARGE_DAPE_CPG2_2
InterPro
IPR002933
Family
Peptidase M20
PF01546\"[138-402]TPeptidase_M20
InterPro
IPR010161
Family
Peptidase M20B, tripeptide aminopeptidase
TIGR01882\"[2-405]Tpeptidase-T
InterPro
IPR011650
Domain
Peptidase M20, dimerisation
PF07687\"[205-309]TM20_dimer
noIPR
unintegrated
unintegrated
G3DSA:3.40.630.10\"[2-405]TG3DSA:3.40.630.10
PTHR11014\"[1-91]T\"[116-405]TPTHR11014
PTHR11014:SF3\"[1-91]T\"[116-405]TPTHR11014:SF3
SSF53187\"[2-405]TSSF53187
SSF55031\"[208-319]TSSF55031


","No hit to the COGs database.","***** IPB001261 (ArgE/dapE/ACY1/CPG2/yscS family) with a combined E-value of 7.2e-24. IPB001261A 127-133 IPB001261B 139-154 IPB001261C 165-174 IPB001261D 364-380","Residues 214-400 are 54% similar to a (HYDROLASE PROTEIN ACID AMIDOHYDROLASE DESUCCINYLASE) protein domain (PD001757) which is seen in PEPT_BACSU.Residues 2-212 are 53% similar to a (PEPTIDASE T AMINOTRIPEPTIDASE) protein domain (PD014167) which is seen in PEPT_BACSU.","","Thu Jun 14 08:16:22 MDT 2001","","Thu Jun 14 08:16:22 MDT 2001","Thu Jun 14 08:16:22 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 08:16:22 MDT 2001","Thu Jun 14 08:16:22 MDT 2001","","","Tue Feb 27 13:10:06 MST 2001","Fri Jul 25 14:38:22 2008","Tue Feb 27 13:10:06 MST 2001","Mon Jan 5 15:09:09 2004","Mon Jan 5 15:09:09 2004","yes","Fri Feb 20 15:41:32 MST 1998","PG0407 is similar to two predicted aminoacyl-histidine dipeptidases, PG0123 and PG0489. Residues 42-176 share 34% identity with PG0123 and residues 29-203 share 28% identity with PG0489.","Thu Jun 14 08:20:12 MDT 2001","Fri Jul 25 14:38:22 2008","-64% similar to PDB:1FNO PEPTIDASE T (TRIPEPTIDASE) (E_value = 1.1E_102);-63% similar to PDB:1VIX Crystal structure of a putative peptidase T (E_value = 7.8E_101);","","","Residues 7 to 403 (E-value = 6e-53) place PG0407 in the Peptidase_M20 family which is described as Peptidase family M20/M25/M40 (PF01546)","Mon Apr 2 13:51:23 MDT 2001","34540266","","","","","","1","","","PG0445" "PG0408","486740","487444","705","ATGAAACCAAACTTTTCCGAACGTTACGCTCGCCAGACGGCTCTTCCCGAAGTGGGAGCCGATGGACAGCAGCGATTAGATGGTTCGCATGTCCTTGTCATAGGAGCCGGAGGCCTTGGTTGCCCTGTCCTGCAATATCTCTGTGCTGCAGGCGTGGGGCATATCAGCGTTGTCGATGATGATCGCGTCGACATCAGCAATCTCCAACGTCAAGTGCTCTTTTCCGAAGCCGATTTGGGACAGCCCAAAGCCATTGCGGCAGTAGCTCGTTTGCAGGCGATGAATAGCGATTGCCGTCCGGAAGCTTTCACCGAAAGATTTACGGAGCTGAATGCCGAGATGTTGGCCGGCGAGTGCAACCTTATTATCGATGCTTCGGACAATGCTGAGACGCGCTATTTGATAGATCGTGCTTCTCTTGCTCTCGGAATTCCTTGGATATATGGCAGTATTGCCGGATGGCGCGGGCAATTCACTGTCTTCGGTTATGGCCATCCGGTGCGTTATTCGGATCTTTTTCCCTCCGGCGAAGCGGCTCCCGAGGAAGTGCCCCCAGCCGTTATCGGAGCCTTGCCCGGTGCCGTTGGATCTATGATGGCAGCCGAAGCCATCAAAATCCTCTTGGGAAGACCCGCCGAAGAAACTCTCAGTGGCCGTCTCCTCCTCATGGATCTGTTGCATGGCGAGTCGCGCACTATCCGCTAT","4.70","-9.22","25213","MKPNFSERYARQTALPEVGADGQQRLDGSHVLVIGAGGLGCPVLQYLCAAGVGHISVVDDDRVDISNLQRQVLFSEADLGQPKAIAAVARLQAMNSDCRPEAFTERFTELNAEMLAGECNLIIDASDNAETRYLIDRASLALGIPWIYGSIAGWRGQFTVFGYGHPVRYSDLFPSGEAAPEEVPPAVIGALPGAVGSMMAAEAIKILLGRPAEETLSGRLLLMDLLHGESRTIRY","486698 487444","TIGR ID: PG0446","molybdopterin synthase sulphurylase","Cytoplasm, Inner membrane","Residues 8 to 233 share 47% identity with gb|AAD21203.1| (AF128444), MoaB in Rhodobacter capsulatus.Residues 8 to 234 share 43% identity with emb|CAA76284.1| (Y16560), the MPT-synthase sulfurylase in Synechococcus PCC7942.Residues 1 to 234 share 41% identity with gb|AAD18052.1| (AF124161), the molybdopterin synthase sulphurylase in Nicotiana plumbaginifolia.This region shares a similar degree of identity with a number of additional molybdopterin synthase sulphurylases in other bacterial genera.","
InterPro
IPR000594
Domain
UBA/THIF-type NAD/FAD binding fold
PF00899\"[27-161]TThiF
InterPro
IPR007901
Domain
MoeZ/MoeB
PF05237\"[169-234]TMoeZ_MoeB
InterPro
IPR009036
Domain
Molybdenum cofactor biosynthesis
SSF69572\"[1-235]TMoeB
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.720\"[7-235]TG3DSA:3.40.50.720
PTHR10953\"[6-226]TPTHR10953


","BeTs to 10 clades of COG0476COG name: Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2Functional Class: HThe phylogenetic pattern of COG0476 is A-tkYq-cEBRhuj-------Number of proteins in this genome belonging to this COG is 1","***** IPB000011 (Ubiquitin-activating enzyme) with a combined E-value of 5e-13. IPB000011A 9-50 IPB000011B 68-95 IPB000011C 110-148","Residues 8-110 are 33% similar to a (HYPOTHETICAL 33.4 KD PROTEIN) protein domain (PD207389) which is seen in Q9Z5X6_BBBBB.Residues 111-174 are 43% similar to a (PROTEIN ENZYME UBIQUITIN-ACTIVATING UBIQUITIN) protein domain (PD001405) which is seen in O54307_SYNP7.Residues 21-107 are 52% similar to a (PROTEIN ENZYME UBIQUITIN UBIQUITIN-ACTIVATING E1) protein domain (PD000731) which is seen in O25494_HELPY.","","Thu Jun 14 08:21:18 MDT 2001","","Thu Jun 14 08:21:18 MDT 2001","Thu Jun 14 08:21:18 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 08:21:18 MDT 2001","Thu Jun 14 08:21:18 MDT 2001","","","Tue Feb 27 13:16:24 MST 2001","Thu Jun 14 09:11:15 MDT 2001","Mon Apr 2 13:54:00 MDT 2001","Tue Feb 27 13:16:24 MST 2001","Tue Feb 27 13:16:24 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 18 to 153 share 29% identity with PG1478, a conserved hypothetical protein.","Thu Jun 14 09:07:31 MDT 2001","Tue Feb 27 13:16:24 MST 2001","-53% similar to PDB:1ZFN Structural Analysis of Escherichia coli ThiF (E_value = 7.7E_30);-53% similar to PDB:1ZKM Structural Analysis of Escherichia Coli ThiF (E_value = 7.7E_30);-53% similar to PDB:1ZUD Structure of ThiS-ThiF protein complex (E_value = 7.7E_30);-51% similar to PDB:1JW9 Structure of the Native MoeB-MoaD Protein Complex (E_value = 8.5E_29);-51% similar to PDB:1JWA Structure of the ATP-bound MoeB-MoaD Protein Complex (E_value = 8.5E_29);","","","Residues 27 to 161 (E-value = 7.1e-55) place PG0408 in the ThiF family which is described as ThiF family (PF00899)Residues 164 to 235 (E-value = 2.1e-12) place PG0408 in the MoeZ_MoeB family which is described as MoeZ/MoeB domain (PF05237)","Mon Apr 2 13:54:00 MDT 2001","34540267","","","","","","1","","","PG0446" "PG0409","487419","488234","816","ATGGCGAGTCGCGCACTATCCGCTATTAGCAATCCTACTAATCTGCTTAATCAAAATAATTCCGATTCCCCCTCCCCAAAAACCATGTCCTTCAATCTGATCGTCGATCAAGGCAATTCTGCCTGTAAGGTTGCTTTCGTCCGAAATAATAGTATAGAGAGCATTTCCTTTCTGCCGGGAAAAGCCGGACAGGCACTCAGCCATCTCGTCGCTCCTCACCGTTTCGACAAGGCTATCTACTCATCTGTGGGGCTTCCCGACGAAGAGGCTGAAGCTATTGTGAGAAGTTGTGCAGCTGCTTCCTTGATGATGGGGACTGAGACCCCCGTACCCCTTCGCCTGCAATATGATCGCCGCACTTTGGGTGCCGACCGACTGGCTGCGGTGGTCGGAGCGCATAGTCTCTATCCGAATACCGAATTGCTGGTGATCGACGCCGGTACTGCCATCACTTATGAACGAGTATCCGCTGAAGGGATCTATCTCGGTGGCAATATATCGCCCGGTCTCCACTTGCGCTTCAAGGCTCTTCATCTCTTTACGGGCAGGCTCCCCCTGATTGATCCTTCCGGTATCTCTCCGAAAATAGCCGAGTATGGCTCCTCGACCGAAGAAGCGATCACAGCCGGAGTAATTCATGGCCTGGCAGGGGAGATAGACAGATATATTGACGATCTGCACGCTAAAGAGGGGCGGTCTGCCGTTATACTGACCGGAGGAGATGCCAACTATTTGGCACGGATTATAAGAAGCGGAATACTAATTCATCCCGATTTAGTACTTTTGGGCCTAAATAGAATTTTAGAATATAATGTA","6.50","-2.17","29012","MASRALSAISNPTNLLNQNNSDSPSPKTMSFNLIVDQGNSACKVAFVRNNSIESISFLPGKAGQALSHLVAPHRFDKAIYSSVGLPDEEAEAIVRSCAAASLMMGTETPVPLRLQYDRRTLGADRLAAVVGAHSLYPNTELLVIDAGTAITYERVSAEGIYLGGNISPGLHLRFKALHLFTGRLPLIDPSGISPKIAEYGSSTEEAITAGVIHGLAGEIDRYIDDLHAKEGRSAVILTGGDANYLARIIRSGILIHPDLVLLGLNRILEYNV","487389 488234","TIGR ID: PG0447","conserved hypothetical protein","Cytoplasm","Residues 77 to 272 share 29% identity with gbAAG28531.1AF198621_2 (AF198621), putative 32 kDa replication protein in Bacillus stearothermophilus.Residues 105 to 272 share 33% identity with embCAB40880.1 (AL049628), a hypothetical protein in Streptomyces coelicolor A3(2).Residues 117 to 264 share 37% identity with gbAAG07667.1AE004843_9 (AE004843), a hypothetical protein in Pseudomonas aeruginosa.","
InterPro
IPR004619
Family
Bordetella pertussis Bvg accessory factor
PF03309\"[32-225]TBvg_acc_factor
TIGR00671\"[32-269]Tbaf: transcriptional activator, putative, B


","BeTs to 7 clades of COG1521COG name: Putative transcriptional regulators, homologs of Bvg accessory factorFunctional Class: KThe phylogenetic pattern of COG1521 is -----qvc-br-uj--ol---Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 77-220 are 27% similar to a (PROTEIN CONSERVED BVG ACCESSORY) protein domain (PD013593) which is seen in YACB_BACSU.","","Thu Jun 14 08:25:19 MDT 2001","","Thu Jun 14 08:25:19 MDT 2001","Thu Jun 14 08:25:19 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 08:25:19 MDT 2001","Thu Jun 14 08:25:19 MDT 2001","","","Sat Feb 24 21:03:49 MST 2001","Thu Jul 24 13:36:56 2008","Thu Jun 14 08:25:19 MDT 2001","","Thu Jul 24 13:36:56 2008","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Jul 24 13:36:56 2008","-53% similar to PDB:2H3G Structure of the Type III Pantothenate Kinase (CoaX) from Bacillus Anthracis (E_value = 1.1E_14);-51% similar to PDB:2F9T Structure of the type III CoaA from Pseudomonas aeruginosa (E_value = 5.6E_14);-51% similar to PDB:2F9W Structure of the type III CoaA from Pseudomonas aeruginosa (E_value = 5.6E_14);-49% similar to PDB:2GTD Crystal Structure of a Type III Pantothenate Kinase: Insight into the Catalysis of an Essential Coenzyme A Biosynthetic Enzyme Universally Distributed in Bacteria (E_value = 5.8E_11);","","","Residues 32 to 225 (E-value = 5.6e-18) place PG0409 in the Bvg_acc_factor family which is described as Bordetella pertussis Bvg accessory factor family (PF03309)","Thu Jun 14 08:25:19 MDT 2001","161579532","","","","","","1","","","PG0447" "PG0410","488230","489531","1302","ATGTATAAAGACTATAAGGGTTTGTATGCGTCGCTTCGGTGGTATGCCCTGATCATTGGGTTGCTATTTGCAGCAGACGGTATACAGGCTCAGAACAACAACTTTACCGAGTCGCCTTACACTCGCTTCGGCCTTGGCCGTCTCGGAGAACGGACGACTATTAGTGGGCATTCCATGGGAGGACTCGGCGTCGGTCTGCGTCAGGGCACATACGTCAATGCCGTCAATCCTGCTTCATACTCGGCTGTGGATTCGATGACGTTTATCTTCGATTTCGGTGCATCTACCGGAATTACGTGGTATGCCGAGAACGGGAAAAAGGACAATAGGAAAATGGGAAACATTGAGTATTTCGCCATGCTTTTTCCTATTTCCAAATCCATTGCTATGAGTGCGGGAGTGCTTCCTTACTCCGCATCCGGGTACCAGTTCGGATCCGTTGATCAAGTGGAAGGAGGCAGCGTCCAGTACACCCGTAAATACTTGGGGACAGGCAATCTGAACGATCTCTATGTCGGTATAGGTGCAACCCCGTTCAAAAACTTCTCAATAGGAGCCAATGCTTCATCCCTTTTTGGGCGATTCACACACAGCAGGCAGGTAATCTTCTCCACGGAGGCTCCTTACAATCCCGTACATCTCTCGACGCTGTACTTGAAGGCTGCCAAGTTCGACTTCGGTATGCAGTATCACCTTCTTCTCAAATCAGATCGTTCGCTCGTTATCGGTGCCGTCTATTCTCCGCGGGTGAAGATGCATAGCGAGCTGACTCAGATAAAGAATCAGGTTCAGAACGGTGTAGTAGTGGAGAGCGAAACCCAAGAATATATCAAGGGAATGGACTATTATACCCTGCCTCATACATTGGGGATAGGTTTTTCTTATGAAAAGAAAGATAAACTTCTCTTAGGAGCAGACGTCCAATATAGTAAATGGAAAGGCGAGAAATTTTATAAATCCGATTGCAAATTCCAGGACAGAATACGGGTATCTCTCGGCGGAGAGATCATACCGGATATAAATGCCGTTGGGATGTGGCCTAAAGTTCGCTATCGCTTCGGTTTACATGGTGAAAATTCTTACCTGAAAGTGCCGACTAAAGGCGGTGTATATCAAGGATACCATATCGTAGGTGCTGTATTCGGTATAGGAATCCCGCTCAATGACAGACGTTCGTTCGTAAATGTCTCTCTTGAATATGACCGATTGATCCCGAAGGAGGGTATGATCAAAGAAAATGCTCTGAAATTGACCTTCGGCCTCACGTTCAACGAGTCATGGTTTAAAAAGCTGAAACTGAAC","10.30","15.89","48467","MYKDYKGLYASLRWYALIIGLLFAADGIQAQNNNFTESPYTRFGLGRLGERTTISGHSMGGLGVGLRQGTYVNAVNPASYSAVDSMTFIFDFGASTGITWYAENGKKDNRKMGNIEYFAMLFPISKSIAMSAGVLPYSASGYQFGSVDQVEGGSVQYTRKYLGTGNLNDLYVGIGATPFKNFSIGANASSLFGRFTHSRQVIFSTEAPYNPVHLSTLYLKAAKFDFGMQYHLLLKSDRSLVIGAVYSPRVKMHSELTQIKNQVQNGVVVESETQEYIKGMDYYTLPHTLGIGFSYEKKDKLLLGADVQYSKWKGEKFYKSDCKFQDRIRVSLGGEIIPDINAVGMWPKVRYRFGLHGENSYLKVPTKGGVYQGYHIVGAVFGIGIPLNDRRSFVNVSLEYDRLIPKEGMIKENALKLTFGLTFNESWFKKLKLN","488230 489531","TIGR ID: PG0448","conserved hypothetical protein","Outer membrane, Extracellular","Its nearest neighbor in the NR database is gi:53712365 from Bacteroides fragilis YCH46.","
noIPR
unintegrated
unintegrated
SSF56935\"[45-318]TSSF56935


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Sep 10 17:07:15 2004","Wed Mar 2 11:03:14 2005","Tue Feb 20 12:59:40 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 20 12:59:40 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Feb 20 12:59:40 MST 2001","34540269","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Wed Mar 2 11:04:02 2005","","1","","","PG0448" "PG0411","489546","490925","1380","ATGTTGAACATTAAAAGAATAAAGAAGAAAATGAATGCAAGAAATTTGTTTGCAACGGCAGCACTGCTTTTTACCGCAAGCACAGCCTTTGCTCAGACCGGAGTCCAAACAAATACCCCATTCGGTAGTGGAGAAGACAGCATCCGTTGCCGTCAAAACATAAGTCTCTTTACCTCTTATGCGAAAACGGGTAATTACAAGGATGCCTATGATTTTTGGGAGAAAGCCTATGAGGAGTGCCCCGCTTCCACGAAGAATATCTATATCTACGGTGTGAAGATCAGCGAATGGCGCTTACAAAACGAACAGGATCCGGCCAAACGTCAGCAGATCATCGATAAAATTCTCAAGCTGTATGATGACCGTGTCAAATACTTCGGAGAAGACCCCAAGTATGGAACGGACTATATCATGGCCAGCAAAATATCGGACTACATGCAGTATATGGGCGATAAAACGGATTATGACAAGGTTTATGAATGGATCAAGCCGACCATCGATCAGCATGGAGAGAATGCTACGCCTCGAGCTCTATTCTATTATGCTTACTCCTCTCTGAACAAAGCTATCAGAAATGAGGCATGGCACGAAACCTATATTAAGGATTATACGTTTGCATCCCAGGCCATGGAGAAGCAGTTGGAAGTGGCCGATGAGAAAGGCAAAGAGTTTATCCAACCGCTGAAAACTCAGATCGACGAACTCTTCGCCCAGAGTGGTCTTGCAGACTGCAATACTTTGGTGAAAATGTATGGCGATAAGCTGGAGGAAAACAAGACGGATACGACTTTCCTGAAGAATATGCTCGGCATGTTCCACGCTTCCGACTGCGAGACACATCCGCTTTATTTCCAAGCCAATAAATACCTCTTTGCCGTACAGCCCTCAGCTATAGCTGCTATGGGCCTTGCCAAAGAGGCGATGGAAGGAAATCGATACAATGAAGCCAGCGACTATCTCCAAAAGGCTATCGAACTAAGCAAGAGTGCCAAAGACCGTGCAGCCTGCAACTATACGTTGGGTCTGTTGGCTATGAAGCAGGGTAGTTACTCTACGGCACGCTCTTACTGCAATAAAGCACTGGCCGAAGATCCTGCGATGGGCGATGCTCTTATCCTGATTGCCCAAATGTATGCAGCAACGGCCAATACTGTCTTCCCCGGTGATGCTATCAAGGCACGCTGTGTATATTTCCTGGCCGTGGACAAACTCCAGCGTGCCAAGAATATCGATCCTTCTTGTGCTCCCAGAGCCAATCGTCTGATCAGTCAGTATAGCCGCAACTTCCCTTCTCCTGCTGATGTGTTTATGCATCCGGATTTGGAGAAAGGCAAGAGTCTCTTTGTCGGAGGATGGATCGGCGAATCTACTGTCATTCGC","7.80","2.85","52124","MLNIKRIKKKMNARNLFATAALLFTASTAFAQTGVQTNTPFGSGEDSIRCRQNISLFTSYAKTGNYKDAYDFWEKAYEECPASTKNIYIYGVKISEWRLQNEQDPAKRQQIIDKILKLYDDRVKYFGEDPKYGTDYIMASKISDYMQYMGDKTDYDKVYEWIKPTIDQHGENATPRALFYYAYSSLNKAIRNEAWHETYIKDYTFASQAMEKQLEVADEKGKEFIQPLKTQIDELFAQSGLADCNTLVKMYGDKLEENKTDTTFLKNMLGMFHASDCETHPLYFQANKYLFAVQPSAIAAMGLAKEAMEGNRYNEASDYLQKAIELSKSAKDRAACNYTLGLLAMKQGSYSTARSYCNKALAEDPAMGDALILIAQMYAATANTVFPGDAIKARCVYFLAVDKLQRAKNIDPSCAPRANRLISQYSRNFPSPADVFMHPDLEKGKSLFVGGWIGESTVIR","489546 490925","TIGR ID: PG0449","conserved hypothetical protein","Periplasm, Inner membrane","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR001440
Repeat
Tetratricopeptide TPR_1
PF00515\"[60-83]TTPR_1
InterPro
IPR008928
Domain
Six-hairpin glycosidase-like
SSF48208\"[102-176]TGlyco_trans_6hp
InterPro
IPR011990
Domain
Tetratricopeptide-like helical
G3DSA:1.25.40.10\"[296-425]TTPR-like_helical
InterPro
IPR013026
Domain
Tetratricopeptide region
SM00028\"[50-83]T\"[297-330]T\"[334-367]TTPR
PS50293\"[50-83]T\"[297-367]TTPR_REGION
InterPro
IPR013105
Repeat
Tetratricopeptide TPR_2
PF07719\"[297-330]T\"[334-367]TTPR_2
noIPR
unintegrated
unintegrated
PTHR10098\"[306-335]TPTHR10098
PTHR10098:SF10\"[306-335]TPTHR10098:SF10
SSF48452\"[295-427]TSSF48452


","BeTs to 10 clades of COG0457COG name: TPR-repeat-containing proteinsFunctional Class:  RThe phylogenetic pattern of COG0457 is AMTKYQVCEB-HUJ--OLINXNumber of proteins in this genome belonging to this COG is 21","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Feb 27 12:54:24 MST 2001","","Tue Feb 27 12:54:24 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 27 12:54:24 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Feb 27 12:54:24 MST 2001","34540270","","","","","","1","","","PG0449" "PG0412","490953","491660","708","TTGCGCATGGACCCCGGCCAACGAATAAAAACTATCAAGAACACAACACTGCTTCTATCAGGGGCAGTCGTTGTGTTTTTCTGTTTCTTATCTTTCGCCGCTTGTCGGAGGGGTAAAACGGAAGTGGTCAAACATGATCTGAATCTGGATTCGGCCTATTCGATGCACACGACTGATGTCAATACGTTAATATCCGATTCCGGATTGGTACAGTTCAGGATGAAAGCCAAAGATTGGTTCATTTATGATAGGGGAGAAAAACCTCACTGGCTGTTTCCCAATGGGATCTATGTAGAACGGTTCGACACACTGAATCACATCTTAGCCACTATCGTGGCAGATACTGCCTATTATATGATCGACGATGATCGCTTTATCCTCATTGGTCATGCACATATCCGCAATATGAATGACGAGAACTTCCATTCCCCCCGATTTATATGGGATAAGAAGAACGCCATTGTTTATTCCGATGATACAGTCTACATTCAAAGCCCGGACAAAATACTCCGAGGGACGTCTTTCACTGCAACTCAAGATATGGGTGAGTACACCATATTCAATCATTCCGGCGACTACTATGTGAGTGAAGAGGAGGACAAATCCGCCGACACCATACCGATTCGTCAAGGGGATCGGACAGCAAAGCCTGCCGCTTCTCCTTTCATGCCGAGACCATCGGTTTCTCCAACCACCAAAGAGCAAAAA","6.70","-1.17","27047","LRMDPGQRIKTIKNTTLLLSGAVVVFFCFLSFAACRRGKTEVVKHDLNLDSAYSMHTTDVNTLISDSGLVQFRMKAKDWFIYDRGEKPHWLFPNGIYVERFDTLNHILATIVADTAYYMIDDDRFILIGHAHIRNMNDENFHSPRFIWDKKNAIVYSDDTVYIQSPDKILRGTSFTATQDMGEYTIFNHSGDYYVSEEEDKSADTIPIRQGDRTAKPAASPFMPRPSVSPTTKEQK","490953 491660","TIGR ID: PG0450","conserved hypothetical protein","Cytoplasm","No hit found in gapped BLAST.","
InterPro
IPR010664
Family
Protein of unknown function DUF1239
PF06835\"[21-192]TDUF1239
noIPR
unintegrated
unintegrated
signalp\"[1-35]?signal-peptide
tmhmm\"[15-35]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Sep 10 16:52:30 2004","","Tue Feb 20 13:01:27 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 20 13:01:27 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Feb 20 13:01:27 MST 2001","34540271","","","","","","1","","","PG0450" "PG0413","491660","492910","1251","ATGAATTACCTGTACATACTGATTACACTTTTACTCTCCGGCTTTTTTTCCGGTGCTGAGATTGCTTTCCTTTCTTCGGACAAACTGCGTCTTGAGTTGGACAGGAATAGAGGCGATCTCACAGGCAGAGCGTTAAACTTGCTGTATCGACATCCGGACCAACTGGTGACTACTCTCCTTGTGGGTAATAATATCGTTTTGGTAGTCTATGGTCTGCTGATGGCGGGATTGCTGGCCGCACCTTTGGCGCAATGGATTGATAACGATGCTATGATCGTCGTTCTCCAATCTGTCTTATCCACTATCATCATACTGTTTACCGGGGAATTTCTACCCAAAGCCATTTTCAAGACCAATGCCAATATGATGATGAGGGTATTCGCCCTCCCTATCGTAGCGATCTATTATCTGCTTTATCCTCTGTCTAAACTCTTCACCGGTTTATCTCGCTCTTTTATTCGTCTGGTGGACAAGAATTATGTGCCTACAACAGTAGGGTTGGGGCGCGTAGATCTCGATCATTATTTGGCAGAAAATATGTCCGGAGAAAACGAACAGAACGACTTGACTACCGAAGTGAAAATCATCCAGAATGCGCTGGATTTTTCCGGTATTCAGGTGCGAGACTGCATGATCCCACGCAATGAGATGATAGCATGTGAGTTGCAAACGGATATTGAAGTACTCAAAACGACTTTTATCGATACCGGTTTGTCCAAGATCATTATCTACAGACAGAACATAGATGACGTAGTAGGATATATCCATTCGAGCGAAATGTTTCGTGGGCAAGACTGGCAAAAACGTATCAATACTACTGTATTCGTACCCGAAAGCATGTATGCCAATAAACTGATGCGACTACTCATGCAGCGCAAGAAAAGCATTGCGATCGTCATCGATGAACTTGGAGGTACGGCCGGAATGGTCACATTAGAGGATTTGGTAGAAGAGATTTTCGGTGACATTGAGGACGAACACGACACTCGCAAGATCATAGCCAAACAGCTCGGCCCTCATACCTATCTGGTCAGTGGTCGTATGGAAATAGATGATGTGAACGAACGTTTTGGGTTGTCCTTGCCTGAGTCTGACGACTACCTTACCGTGGCCGGATTTATCCTGAATAGCCATCAAAATATCCCACAGGCCAATGAGGTCGTGGAGATTGCTCCTTATACTTTTACCATTCTCAGATCTTCTTCCACCAAGATCGAACTGGTGAAAATGTCCATCGACGACCAATCGAAC","4.70","-14.62","47013","MNYLYILITLLLSGFFSGAEIAFLSSDKLRLELDRNRGDLTGRALNLLYRHPDQLVTTLLVGNNIVLVVYGLLMAGLLAAPLAQWIDNDAMIVVLQSVLSTIIILFTGEFLPKAIFKTNANMMMRVFALPIVAIYYLLYPLSKLFTGLSRSFIRLVDKNYVPTTVGLGRVDLDHYLAENMSGENEQNDLTTEVKIIQNALDFSGIQVRDCMIPRNEMIACELQTDIEVLKTTFIDTGLSKIIIYRQNIDDVVGYIHSSEMFRGQDWQKRINTTVFVPESMYANKLMRLLMQRKKSIAIVIDELGGTAGMVTLEDLVEEIFGDIEDEHDTRKIIAKQLGPHTYLVSGRMEIDDVNERFGLSLPESDDYLTVAGFILNSHQNIPQANEVVEIAPYTFTILRSSSTKIELVKMSIDDQSN","491660 492910","TIGR ID: PG0451","conserved hypothetical protein (possible hemolysin-related protein)","Inner membrane, Cytoplasm","Residues 1 to 413 share 26% identity with gb|AAG00559.2|AF287009_4 (AF287009), GldE in Flavobacterium johnsoniae.Residues 4 to 412 share 26% identity with gb|AAD35927.1|AE001751_7 (AE001751), a hemolysin-related protein in Thermotoga maritima.Residues 1 to 386 share 27% identity with gb|AAC05772.1| (AF051356), a putative hemolysin in Streptococcus mutans.This region shares a similar degree if identity with a number of additional bacterial hemolysin-related proteins.This sequence is similar to BT4370.","
InterPro
IPR000644
Domain
Cystathionine-beta-synthase
PF00571\"[211-320]TCBS
InterPro
IPR002550
Domain
Protein of unknown function DUF21
PF01595\"[1-188]TDUF21
InterPro
IPR005170
Domain
Transporter-associated region
PF03471\"[335-414]TCorC_HlyC
noIPR
unintegrated
unintegrated
PTHR22777\"[35-416]TPTHR22777
SSF54631\"[201-262]T\"[274-336]TSSF54631


","BeTs to 11 clades of COG1253COG name: Uncharacterized CBS domain-containing proteinsFunctional Class:� RThe phylogenetic pattern of COG1253 is -----QVCEBRHuj--OLINXNumber of proteins in this genome belonging to this COG is 2","***** PF01595 (Domain of unknown function) with a combined E-value of 2.4e-16. PF01595A 209-218 PF01595B 295-326","Residues 285-348 are 46% similar to a (PROTEIN TRANSMEMBRANE HEMOLYSIN INTERGENIC REGION) protein domain (PD002327) which is seen in O68574_STRMU.Residues 12-156 are 22% similar to a (PROTEIN TRANSMEMBRANE HEMOLYSIN) protein domain (PD002457) which is seen in YFJD_ECOLI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Feb 27 13:00:37 MST 2001","Mon Jan 5 12:47:02 2004","Mon Jan 5 12:47:02 2004","Tue Feb 27 13:00:37 MST 2001","Tue Feb 27 13:00:37 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 3 to 410 share 26% identity with PG0244, a conserved hypothetical protein (hemolysin with CBS domains).","Tue Feb 27 13:00:37 MST 2001","Tue Feb 27 13:00:37 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 1 to 188 (E-value = 7.8e-29) place PG0413 in the DUF21 family which is described as Domain of unknown function DUF21 (PF01595)Residues 267 to 320 (E-value = 3.4e-05) place PG0413 in the CBS family which is described as CBS domain (PF00571)Residues 335 to 414 (E-value = 7.7e-22) place PG0413 in the CorC_HlyC family which is described as Transporter associated domain (PF03471)","Mon Jan 5 12:47:02 2004","34540272","","","","","","1","","","PG0451" "PG0414","493020","495164","2145","ATGGCGACATTAGAGAAAATCAGAGGTAAAGCCGGTTTGCTCATCGTAGTGGTGGGCGTGGCTCTTTTTGCCTTTATTATCGGAGACTTCCTTCGATCCGGATCTACTTTCTTCCGTCAGAGCCAAGAAGTAGTCTTGGATATCAACGGAGAGAAAATCAAAATCTACGATTACCAACAGCGTCTCAAAGCGATGGAGAAACGCGCCGAGCAAAGTGGAACAAAGATCACCGACGAACAGCGTGCTTCTCTGAACAATCAGCTCGCACAGCAGTATGTACAGGACTACGTGCTCGGGCAGCAAGCTGACAAGTTGGGTCTTACGGTAAGTCCGGAAGAGCTATTGGCTCTGATTATCGGTGATGGTGTTCAGCCCTCCATGTTCGCCCAACAGTTTTTCTCCCGATTTGGTATCAATGGATCCGACAGGGCTGCCGTGAATGATTTTCTGAATCACATCAGCGACAAGCAAATTAAATTGCAGCCGGCCGAACAGCAAGGCTATCTGTACGAAATCCAGAGTGAATGGCAGAGCGTGGAAAAGCAAATCGCAGATACCCGTATGCAAGAAAAGTTGGGTGCTCTGCTGACGAGATCTTATGCCATTAATGATATCGATGCCAGATACGAATCCGGAGTGCCCAGTCGTGAAGTAGCTGTGGCACAAGCTCCCATATCTGTCATTGGCGATACTTCTATTCGTGCCACGGATGAGGAGATCAAAAAGTACTACAACGAACACAAAGAGTTCTTCGTTCAGAAATATCCGTCTACCATCGTCCAGTATATCAGCTCTCAGGTAGTGCCGAGTGCTCAAGACATGGCAAATGCAGAAGTGGAGATGCAGAAGGTACGCACCGAGATGCAACAGCAAAGCGATGTGGAAGCTCTTGCCCGCAACTATTCGGACAAGTTCGTATCTCCTTCTTTCCTGACTTCGGCGGAACTCGATCGCATGAACCTCGGCGTAAGCATTACCGAATTTATCAAGACTGCGACACCGGGCGAAGTCAATATCCCGATGTTGGAGAATAACCACTATTCTTTGGTAAAGTTGGTGGCTAAAAAGTCCGGATTCGAATCGCTCAATGTGGCAATCATTGCTCTGGACTCCGCCAATCTGTCTAAGGCCGACAGCCTTTGCAACGCCTTGAATGAGGGGGGCGACTTCGCTGCTGCAGCTCGCACGTTCAGCGCAGATCCTACCTCTCGTGAGACAGGCGGTGTACTCACGTTCCCCAACCAGTTTACACAAATGCCGGATAGCACTATTACAGAGGCTATGGCTCAGCAGCTGCACCTCGACACTCTTTTTAGCGTTCCATCGAATAGAGTGATCAAAATGAATCAGGATAAATTCGTTTTCCTGGCCAAAGCTTTCAATCCCAAGCCGGCTGTAGATAAATACAAAATTGCCTATATCGGAGTAGATGCTAATTTTTCTGATGAGACATACAATAAGAAGTTTATGGAGCTGAACGAGATGTTGAACTCCGGCAAACCTTTCCCCAAACTCGCAGAACAGGCACGCAGCAAGGGCTTGAGTATAGAGGAAAATGCCGAAGTGACAGTATTCTCGGATCACGTAGGCAATATCCCCTCCTCTCGTGAGATCGTTAGCTGGGCTCTCAAAGCAGAGGAGGATGAGGTGAACGAAAAGATCTTCCGTTGCGGTACTGACTATTTGGTGATTGCCGCCGTAAAAGATCAGATTCCCTCCGGCTATCGTCCCGTGGAGAAGATCAAAGAGCAAATAGCCAATCAGCTGCGTGTCGAAAAACAAGGCGAGAAACTGGTGGCTGATCTGAAAGCCAAGAAGCTGGACAACCTCGAAGCCTATGCTTCTGCGATGAACACAAAAATCGATACTCTTGCGGGAATCAGCTACTCTCCGCGCGGAGGTGAAGCAGCCGAATTGGCCGGATATGCCATGTCTACGCCGCTGACCAAGCTGTCCGAACCTTTTGCTGCTCGCAACTATGTGATGGTAGTGAAGCCTTTGACGCAAAACGAAAAGGCTGCCGGCCAGAGCGTAGAAGCCCAAATAGCTCAAAAACGTCGTGCACTCGGTCAGCAGACAGCGTACCGTGCATTCCGCAAAATGCTTGATCAGGTGCCCGTCACAGACAACCGCGCCCGTTTCTAC","5.40","-7.81","79499","MATLEKIRGKAGLLIVVVGVALFAFIIGDFLRSGSTFFRQSQEVVLDINGEKIKIYDYQQRLKAMEKRAEQSGTKITDEQRASLNNQLAQQYVQDYVLGQQADKLGLTVSPEELLALIIGDGVQPSMFAQQFFSRFGINGSDRAAVNDFLNHISDKQIKLQPAEQQGYLYEIQSEWQSVEKQIADTRMQEKLGALLTRSYAINDIDARYESGVPSREVAVAQAPISVIGDTSIRATDEEIKKYYNEHKEFFVQKYPSTIVQYISSQVVPSAQDMANAEVEMQKVRTEMQQQSDVEALARNYSDKFVSPSFLTSAELDRMNLGVSITEFIKTATPGEVNIPMLENNHYSLVKLVAKKSGFESLNVAIIALDSANLSKADSLCNALNEGGDFAAAARTFSADPTSRETGGVLTFPNQFTQMPDSTITEAMAQQLHLDTLFSVPSNRVIKMNQDKFVFLAKAFNPKPAVDKYKIAYIGVDANFSDETYNKKFMELNEMLNSGKPFPKLAEQARSKGLSIEENAEVTVFSDHVGNIPSSREIVSWALKAEEDEVNEKIFRCGTDYLVIAAVKDQIPSGYRPVEKIKEQIANQLRVEKQGEKLVADLKAKKLDNLEAYASAMNTKIDTLAGISYSPRGGEAAELAGYAMSTPLTKLSEPFAARNYVMVVKPLTQNEKAAGQSVEAQIAQKRRALGQQTAYRAFRKMLDQVPVTDNRARFY","493020 495164","TIGR ID: PG0452","possible peptidyl-prolyl isomerase","Periplasm, Outer membrane","Its nearest neighbor in the NR database is gi:53712369 from Bacteroides fragilis YCH46.","
noIPR
unintegrated
unintegrated
SSF81827\"[43-281]TSSF81827


","BeTs to 5 clades of COG0760COG name: Parvulin-like peptidyl-prolyl isomeraseFunctional Class: OThe phylogenetic pattern of COG0760 is ----yQVcEB-HUJ--ol--XNumber of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Mar 2 11:11:42 2005","Wed Mar 2 11:11:42 2005","Wed Mar 2 11:11:42 2005","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 2 11:11:42 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Sat Feb 24 20:59:28 MST 2001","34540273","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Wed Mar 2 11:11:42 2005","","1","","","PG0452" "PG0415","495457","496728","1272","ATGGAACTTTGGCAATCGATACCGAAAGAGTTTATCAACTTCATGCTCGTCATACTTTTTTCTTTAAGTATGGGGATGGAGCAGCACAAGCAAAGTAAGGCCAATACGGAGAAGAGGATTTTCGGAACAGACCGAACTTTCACCTTTTTCGGGCTATTGGGTTATATCCTCCTGCTACCATCGAAAGAAGAGATGTGGCCGTTTCTTATCGGTTTTATCGTCATTGCCTGTTTCATGATGATATTCTATCTGATGAGAATACGGGAAGAGGGACAGTATGGTCTGACGACAGTGATGCTCGGTCTATTGGTTTATACCTTCCCCCTTGTCATAGTGCGTTGTCCTCTTTGGATAGCTCTTCTTGTTTTCGTCGTAGTCTTGATCCTTGCCGAGATCAAAAAGCCGCTCCAAGACTTCAGTGCGCAGGTAGGGGAGAATGAGTTTCTCACACTGGCCAAGTTCATTATCATAGCTTTTATCGTCTTGCCCATGCTGCCGGATCAGGAGATTTCGGCTCTGCTTCCCGTCTCTCCCTATCGAATCTGGTTGGCCGTTGTCGTCGTTTCCGCAGTATCGTACTTCAGTTACCTGCTTCGCCGGTATATGTTTCCCAAGGCCGGTCTGATCCTTTCGGGAGTACTCGGAGGCCTTTACAGCAGTGTGGTCACAACGGTCATTTTGGCCAAGCAAAGCAAGGAGGGAAAGCACAGCCCCCGCATGTATGCCGGATCCATCATTATCGCTTCCGCCATGATGTATTTCCGCGTATATATCCTGCTCCTTATCTTCAATCAAAGCCTTGCCATCAGCTCATGGCACTATTTCTTGCTCCTCTTTCTTGTCTCAGCCTCTGTGGGTTATCTTTTTTATAAGAAAGGAGAAAAGGCCAAAAGTCTCGACACGCTCGATGCCGCCAGCGATAATCCGTTGGAGTTTAAGGTCGCTTTGGTTTTTGCCATCCTTTATTTGGTCTTCTCGGCACTAACGCAATTCATGATCACGCAGTTCGGATCGGCCGGATTGACCACGCTCTCCTTTATCGTCGGGTTCACGGATATTACCCCCTTCCTGCTAAACCTCTTCCAGGGGCATTATGAGATCACGTCCACGATGATCCTGATCGCCACCATGCAGGTCATGACCAGCAATAATATACTGAAAGCCGTATACACCAAAGTGTGGAGTACGCCGGAGACCACCAAATGGACTTGGAGAGGGCTTGGCCTTATCATTGCATTGAATCTGGCGGTCATCCTCCTGCTCTATATGCTG","9.90","7.87","48030","MELWQSIPKEFINFMLVILFSLSMGMEQHKQSKANTEKRIFGTDRTFTFFGLLGYILLLPSKEEMWPFLIGFIVIACFMMIFYLMRIREEGQYGLTTVMLGLLVYTFPLVIVRCPLWIALLVFVVVLILAEIKKPLQDFSAQVGENEFLTLAKFIIIAFIVLPMLPDQEISALLPVSPYRIWLAVVVVSAVSYFSYLLRRYMFPKAGLILSGVLGGLYSSVVTTVILAKQSKEGKHSPRMYAGSIIIASAMMYFRVYILLLIFNQSLAISSWHYFLLLFLVSASVGYLFYKKGEKAKSLDTLDAASDNPLEFKVALVFAILYLVFSALTQFMITQFGSAGLTTLSFIVGFTDITPFLLNLFQGHYEITSTMILIATMQVMTSNNILKAVYTKVWSTPETTKWTWRGLGLIIALNLAVILLLYML","495457 496728","TIGR ID: PG0453","conserved hypothetical protein","Inner membrane, Cytoplasm","Residues 7 to 349 share 20% identity with gb|AAG19814.1| (AE005066) Vng1525c in Halobacterium sp. NRC-1.Residues 12 to 360 share 23% identity with gb|AAG03433.1|AE004444_2 (AE004444), a hypothetical protein in Pseudomonas aeruginosa. ","
noIPR
unintegrated
unintegrated
signalp\"[1-25]?signal-peptide
tmhmm\"[10-25]?\"[40-60]?\"[66-84]?\"[99-130]?\"[178-198]?\"[208-228]?\"[242-262]?\"[272-290]?\"[314-334]?\"[339-361]?\"[367-387]?\"[402-422]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 211-396 are 23% similar to a (PROTEIN) protein domain (PD038180) which is seen in O67688_AQUAE.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Sat Feb 24 20:57:55 MST 2001","Sat Feb 24 20:57:55 MST 2001","Sat Feb 24 20:57:55 MST 2001","","Sat Feb 24 20:57:55 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Sat Feb 24 20:57:55 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Sat Feb 24 20:57:55 MST 2001","34540274","","","","","","1","","","PG0453" "PG0415.1","497593","497291","303","TTGTTCCTTAATTACGGCAGTCTCACATACGAAGGCTGTTTTTCATTTTTTGCTTTATACTCTTGGTGCTTCTATCCACATTCGGTTCTTTTTTTCGCGTTGGATCGCTTTTTTTCGTTTTCTTCGGCAAAGGCAGTTTCGGAGTACTGCCGGCAACGAGGTCAAACGGCAAGCCGTTTAATCTCCACACTTCCATTTCATTACAGGTCGTATTCTTGCCACAAACCCTGTTGCCATAAGCTCTTAATGTTTTATTGTCTTGAAACGAAAACGACCGGCCCGATGGAAATACGCATAAGATTA","","","11919","LFLNYGSLTYEGCFSFFALYSWCFYPHSVLFFALDRFFSFSSAKAVSEYCRQRGQTASRLISTLPFHYRSYSCHKPCCHKLLMFYCLETKTTGPMEIRIRL","","NO TIGR ID corresponds to this gene.","hypothetical protein","Periplasm, Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
noIPR
unintegrated
unintegrated
signalp\"[1-43]?signal-peptide
tmhmm\"[14-34]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","","","Tue Feb 20 13:04:34 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Feb 20 13:04:34 MST 2001","","","","","","","1","","","" "PG0416","497856","499892","2037","ATGAAAAGATGTGACTTGCATATTCACACAGTACCATCTGTGTCTGATAGAGAGTTTACGTATGATAAAGAAATTTTGTCGGATTATGTTGCAAAGACAAAATTGGATGTAATTGCTATTACAAATCACAACTTGTTCGACTATGCACAATTCCAAGAAATAAAGGATATATTGCCTCAAATAGTCGTCTTGCCTGGCATAGAAGTAGATTTGGAGGATGGGCATATTCTTGTCATTGCAAATAATGACGATAGAACTCTGTTTGATTTTAATTCAAAATGCGAAGAAATTAAAAATCTGATAAAAAGTGAAGCTGATAATATTACTTATGATAGATTCGTCGGGATATTTGGCGACTTAAGCAAGTATTTGCTTATACCTCACTATGAAAAAGAGCCAAAACTACGTAAGGATATTCTCGAAAAATTGGGACGAAACATAATAGCAGGTGAAGTATCGAGCGTCAAGAAGTTTATTTATATGGAGAAGGAGAGAGCAGGACTTACACCTGTCTATTTCAGTGACTTCCGCATAGAAAAAGGTATTACACCTGATAAGTATCCTGTCAGTCATACATTTTTTGATGTCGATGAAGTTAATATCAAAACACTGAAACTCTGTCTAATGGATAAGACTAAAGTATCACTGACTTCGGAAGAAGGAATAAAACTTTTTCCAATATTTCCGAATGGACAAAAGTTATCAACGGGTCTCAATATTATGTATGGAAAACGTTCTACAGGAAAAACCTTCACCCTAGATGCTATTGCTAGTCGTTTTAATGGAAAGGCTAAATACATCAAACAATTTGAGCTACTCAATACCAATAGAAACGACTCCGAACAGTTTGAGAGTGATATGAAGGTAAGGCAAGAAGAATCTGCAGAGAATTACTTGCGTGAATTTAGCGATGTAGTAACAGATATGCTAAAAACTTGCTCATCCGATGAAGATGATATAAAATTGCAGAAGTATCTTGACGCTGTTAAATCCTCAGCACAGCAAAGCAATGTAAATGATGTATTTTCAAAATCTAAACTATTTAATGAAAGCGACTTCAAAGAACGGAGTTGTGATGAGATTAAAGAACTTATCAATGCGACACAGACGTTATTAGAATCGCAACTCTACAAAAAGATCATCAATAAGCATTTGTCCGAAATTTCACTAAAAGCACTCTTGAAAGACTTGATAGAACTATATTTGGAAGGTAACGCTGCCAACCAGTATGTCAAAGAGGTCAATAACATGATCAAGATGGTAAAAGAGTCGTTACAATTGAAATCTGCTGCACCTCGTATTCCTGATATAGATTTATACCAGTATTTTATTAATAAGAAAAAGCGTGAAGTTTTTGCCCAAATAGCTATGTCAGTAAAGAAAAGCAGGACAATTAGCACAGAAAAAGCCGGTCATTTTACAGTCAGTGTATCTGCACGTCCATTTATGAATGCCACAGATTTGAAAACAGTCCGATTGACACAGGTATCACTAACCAATGCATTTAAGAAGTATGAAAACCCCGTCCAGTATTTAAATGAGTTAAAAGCTGCAGGTGTTGAGATCAATCGTATTTACAAGCTATTCGCAGCCATAGATTATAAAATACTAAACTCTTCAGGATTACCTGTATCTGGTGGAGAACGTTCGGAGTTTAACTTCCTACAGAAAATTAAAGATGCTATTTTGTGTGATATCCTCATTATTGACGAGCCAGAGTCTTCGTTTGATAATATCTTTTTGAAAAACGAAGTAAACAAGTTTATCAAGGAAATGGCTGAAAATATGCCGGTGATTATTTCCACGCATAATAACACAATAGGAAGTTCAATAAAGCCTGATTACATTCTTTATACTGAAAAAAAGATGGAGGCAGATGGAGCTCATTTCAAGATTTATAGCGGTTATCCAACTGCTAAAGAATTAAGAGATGTTGATGGAAATACAATTGAAAACTACGAAATTACGTTGAACAGCTTAGAGGCTGGTGAACAAGCATATTCAGAAAGGAAAGATATTTATGAAACACTTAAAAAT","5.90","-7.79","77769","MKRCDLHIHTVPSVSDREFTYDKEILSDYVAKTKLDVIAITNHNLFDYAQFQEIKDILPQIVVLPGIEVDLEDGHILVIANNDDRTLFDFNSKCEEIKNLIKSEADNITYDRFVGIFGDLSKYLLIPHYEKEPKLRKDILEKLGRNIIAGEVSSVKKFIYMEKERAGLTPVYFSDFRIEKGITPDKYPVSHTFFDVDEVNIKTLKLCLMDKTKVSLTSEEGIKLFPIFPNGQKLSTGLNIMYGKRSTGKTFTLDAIASRFNGKAKYIKQFELLNTNRNDSEQFESDMKVRQEESAENYLREFSDVVTDMLKTCSSDEDDIKLQKYLDAVKSSAQQSNVNDVFSKSKLFNESDFKERSCDEIKELINATQTLLESQLYKKIINKHLSEISLKALLKDLIELYLEGNAANQYVKEVNNMIKMVKESLQLKSAAPRIPDIDLYQYFINKKKREVFAQIAMSVKKSRTISTEKAGHFTVSVSARPFMNATDLKTVRLTQVSLTNAFKKYENPVQYLNELKAAGVEINRIYKLFAAIDYKILNSSGLPVSGGERSEFNFLQKIKDAILCDILIIDEPESSFDNIFLKNEVNKFIKEMAENMPVIISTHNNTIGSSIKPDYILYTEKKMEADGAHFKIYSGYPTAKELRDVDGNTIENYEITLNSLEAGEQAYSERKDIYETLKN","497856 499892 [Bad Olap 547 50 1]","TIGR ID: PG0456","conserved hypothetical protein(possible ATPase component)","Cytoplasm, Inner membrane","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR004013
Domain
PHP, C-terminal
PF02811\"[4-80]TPHP
noIPR
unintegrated
unintegrated
SSF52540\"[240-604]TSSF52540
SSF89550\"[2-443]TSSF89550


","BeTs to 5 clades of COG1117COG name: ABC-type phosphate transport system, ATPase componentFunctional Class:  PThe phylogenetic pattern of COG1117 is amt--qvCeBRh--gpo----Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Feb 27 13:03:16 MST 2001","","Sat Feb 24 20:54:45 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Sat Feb 24 20:54:45 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Sat Feb 24 20:54:45 MST 2001","34540275","","","","","","1","","","PG0456" "PG0417","499876","500166","291","ATGAAACACTTAAAAATTGAAGGACAGAATGCCTATTTCACGAGAGGTGAAAAGTGGATGGTTGTAACGGAGATGACCAAGGAGGATTTATTGAATCTTGCTCATGCAGCTGTAGAAGAAGAGGATTTTGAAACAGATGCATATGATGAAGCATTGCTCCCAAATCCAGCGCACAAAATTATTTATCAGCAGATTAATAGTCAATTGACGGAATTGCATAATAGAAGAGCCTCCTTTCAAGAAGAAGTGAGGAATATATATAAAAAGGCATATGATAAGTATTGTGCAGAG","5.10","-5.09","11449","MKHLKIEGQNAYFTRGEKWMVVTEMTKEDLLNLAHAAVEEEDFETDAYDEALLPNPAHKIIYQQINSQLTELHNRRASFQEEVRNIYKKAYDKYCAE","499843 500166 [Shorter 546 50 98]","TIGR ID: PG0457","hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 08:30:57 MDT 2001","","Thu Jun 14 08:30:57 MDT 2001","Thu Jun 14 08:30:57 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 08:30:57 MDT 2001","Thu Jun 14 08:30:57 MDT 2001","","","Fri Apr 6 16:07:37 MDT 2001","Thu Jun 14 08:33:48 MDT 2001","Tue Feb 20 13:06:40 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 20 13:06:40 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Jun 20 14:05:34 MDT 2001","34540276","","","","","","1","","","PG0457" "PG0418","501554","500619","936","CTGCTTGGCTTCAGCCGTCAGGCCTTTTATAAACGTCATCTCAACGATTTAGCTAGGCATGAGGAGGATGTCCTATGCAGTAGTATCATCCAATATTGTTGGCACTTAAGACAAGCAGAGCACCTACCTCAAGCCGGCTTCCGAGAGCTCATGGTGCTTTGTCAGCAATACTTCGGCCCCAAGTTCACGCTTGGGCGCGATCGCTTTTGCGCCCTACTCAGACGCCATGGTATGATGCTGCGCAAACGGTCTGTGCGCCCTCGGACAACCAACTCTCGGCATAGGCTCTACAAGTATGAAGACCTGCTCAATACAGAGCCTAAGTTTGTGCCTCAAAGACCTGGGGAACTCCTTGTAGCAGACATCACCTACGTGGCTTACCAAGATGGGTTTGCCTATCTCTCCCTACTGACCGATGCCTATAGTCGCTGTATCGTAGGGTATTGCTTACATCCTACCCTAGAGGTTGAAGGCTGTTTGAATGCTCTACATCAAGCCTTTGCTTTCTACGATCAGCATCAAATTGATACGAGCAATATGATTCATCATAGCGACCGAGGCATTCAGTATGCCGGTAAGAGCTACACCGATCTGTTGCATGGGCGAGGCTGGCGCATCAGCATGACTCAGACGGGAGATCCTCTGCATAATGCATTGGCTGAGCGGATGAACAATACGCTCAAGAACTCGTGGCACATCTCCTCTTCGAAGCAGTCTTTTGATCAAGCACTCCTTTCTGTAGAACAAGCCGTGCGCATGTACAACGAGGCGCGTCCACATCAAGCTCTAGGGGCGAAAACGCCTATGCAAGTCATTACACCGGAGTCTGAAAATCCGTTACTAACGAGGAGGGAGCATGGGCCAGAGATTGCCCCCGAGCTATACCGAAGGATGAATGTCAGACAAAGAGCTAACTTTGCTCGTGTCAACCGAAAT","9.90","13.52","36305","LLGFSRQAFYKRHLNDLARHEEDVLCSSIIQYCWHLRQAEHLPQAGFRELMVLCQQYFGPKFTLGRDRFCALLRRHGMMLRKRSVRPRTTNSRHRLYKYEDLLNTEPKFVPQRPGELLVADITYVAYQDGFAYLSLLTDAYSRCIVGYCLHPTLEVEGCLNALHQAFAFYDQHQIDTSNMIHHSDRGIQYAGKSYTDLLHGRGWRISMTQTGDPLHNALAERMNNTLKNSWHISSSKQSFDQALLSVEQAVRMYNEARPHQALGAKTPMQVITPESENPLLTRREHGPEIAPELYRRMNVRQRANFARVNRN","501404 500619","One of eleven ISPg5 elements in the genome (see Paralogs). Califano et al. report considerable strain diversity of these (Infect. Immun. 68 (9), 5247-5253 (2000)).Member of the IS3 family of insertion elements. See PG0419 for associated ORF.TIGR ID: PG0458","ISPg5 transposase","Cytoplasm","PG0418 is equivalent to the previously reported gb|AAF69128.1| in GenBANK.Numerous significant hits in gapped BLAST to transposase proteins; e.g. residues 91-213 are 56% similar to transposase homolog (U67062) of Bacteriodes thetaiotaomicrom, residues 64-287 are 32% similar to InsB (AF153317) of Shigella dysenteriae, residues 64-268 are 33% similar to Hp1 (AF081284) of E.coli.","
InterPro
IPR001584
Domain
Integrase, catalytic core
PF00665\"[110-273]Trve
PS50994\"[110-276]TINTEGRASE
noIPR
unintegrated
unintegrated
G3DSA:3.30.420.10\"[113-281]Tno description


","No hit to the COGs database.","***** PF01836 (Transposase) with a combined E-value of 4.3e-23. PF01836B 103-154 PF01836C 181-190 PF01836D 215-222 PF01836E 253-272","No significant hit to the ProDom database.","","Thu Jun 14 08:34:56 MDT 2001","","Thu Jun 14 08:34:56 MDT 2001","Thu Jun 14 08:34:56 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 08:34:56 MDT 2001","Thu Jun 14 08:34:56 MDT 2001","","Fri Feb 9 16:22:12 MST 2001","Fri Feb 9 16:21:02 MST 2001","Thu Jun 14 09:24:05 MDT 2001","Thu Nov 16 11:12:40 MST 2000","Thu Jun 14 08:34:56 MDT 2001","","yes","Fri Feb 20 15:41:32 MST 1998","PG0418 is paralogously related to PG1861, PG1491, PG0391, PG0007, PG1436, PG1796, PG0034, PG0533, PG1247 and PG0841.","Fri Mar 10 11:00:30 MST 2000","Thu Jun 14 08:34:56 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 110 to 273 (E-value = 6.6e-31) place PG0418 in the rve family which is described as Integrase core domain (PF00665)","Thu Jun 14 08:34:56 MDT 2001","34540277","","Califano,J.V., Kitten,T., Lewis,J.P., Macrina,F.L., Fleischmann,R.D., Fraser,C.M.,Duncan,M.J. and Dewhirst,F.E. Characterization of Porphyromonas gingivalis insertionsequence-like element ISPg5.Infect. Immun. 68 (9), 5247-5253 (2000)","","Thu Nov 16 11:12:40 MST 2000","","1","","22","PG0458" "PG0419","501985","501611","375","GTGCAAAGGTCTCTTATGGGCAAACATTTAAGCAACTTTGAACGCCTTGCCATCCTAGAGGATTACCTCTCTGGGGCACAGAGCCAAGGTGCCATTGGAAGGAAATATGGCATCAGTCGTGGTCTTATTCCTCAATGGCTTCGTAAATTTGGACTCGAAGATAAAGTTCATCCGGTCCCCATGAAAGCGTCCCAATCCCCCCAGAGTGAGCTGACCCTCAATGAAAAAGAAGAGTTGGAGCAACTACGTAAAGAGAATCGTGTCCTCAAGAGTCGTCTCAAGCGAGAAGAACTAGGGCATCAAGCCTACAAGCTACTTGTTGAGTTGGCAGAAGAAACCTACGGCATCCGGATACGAAAAAACTCCGAAGCCAAG","10.50","6.72","14397","VQRSLMGKHLSNFERLAILEDYLSGAQSQGAIGRKYGISRGLIPQWLRKFGLEDKVHPVPMKASQSPQSELTLNEKEELEQLRKENRVLKSRLKREELGHQAYKLLVELAEETYGIRIRKNSEAK","501985 501611","See PG0418 for associated transposase.Member of the IS3 family of insertion elements.TIGR ID: PG0459. Reported by Chen et al., 2004, to be highly divergent in ATCC 33277.","ISPg5-related orf-1","Cytoplasm","PG0419 is equivalent to the previously reported gbAAF69127.1 in GenBANK.Otherwise, no hits in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Tue Feb 22 13:52:55 2005","Fri Feb 9 17:23:26 MST 2001","Tue Feb 22 13:52:55 2005","Tue Dec 19 15:49:15 MST 2000","","","yes","Fri Feb 20 15:41:32 MST 1998","PG0419 is paralogously related to PG1862, PG1797, PG1490, PG1437, PG0033, PG0532, PG0392, PG1246, PG0840 and PG0008, all ORFs associated with ISPg5-related transposases.","Tue Dec 19 15:49:15 MST 2000","Tue Feb 22 13:52:55 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540278","","Califano,J.V., Kitten,T., Lewis,J.P., Macrina,F.L.,Fleischmann,R.D., Fraser,C.M., Duncan,M.J. and Dewhirst,F.E.Characterization of Porphyromonas gingivalis insertionsequence-like element ISPg5.Infect. Immun. 68 (9), 5247-5253 (2000)20407340Chen T, Hosogi Y, Nishikawa K, Abbey K, Fleischmann RD, Walling J, Duncan MJ.Comparative whole-genome analysis of virulent and avirulent strains of Porphyromonas gingivalis.J Bacteriol. 2004 Aug;186(16):5473-9.PMID: 15292149","","Tue Feb 22 13:52:55 2005","","1","","22","PG0459" "PG0420","502078","503160","1083","ATGGCATACCAATCCAAGAATACCGATGAGCATGTAACATTTGCAGACGCACTCCTTTCAAAGCGTTATCGCAAAGCACAAAACGACTTCCTCAATCAGGTTGAGAGGCTTATCGATTGGCGTCCGATCAGGACGCTGATCAACAAGAAATACACGAAGCGACAAAATGCCATCGGCGCCCCGGCTTATGACGTGATTCTCTTATTCAAGATGTTGCTTTTGGAGACATGGTACAACCTCAGTGATTGTGCTTTGGAGGAGCGCATCAATGATTCAATCACCTTTTCCCGATTCTTGGGACTGAAGATGGAAGAGGTATCTCCCGACCACAGCACCATCAGTCGATTTCGTTCGGCACTGACAGAGTTGGGGCTCATGGACAAACTATTGGCGCAGTTTAACAAACAACTTTCCCGCCATCACATTTCGGTCAGGGAAGGGGTGCTTGTCGATGCAAGCCTTGTGGAGACGCCACATAAACCCAACGGAACCATTACGATTGAAGTCGCAGACGACAGAGAAGACAATCGGAGCGAGGCGGAAAAAGAGGCAGAGGAGGATTATCAAAAACAGGTTGTCCGCCGGCGTAAAGGGACGGATGAAGAAGCCCGTTGGGTGTACAAACAAAAGCGTTATCACTACGGATACAAAAAGCATTGTCTGACCAATGTTCAAGGCATTGTTCAAAAGGTGATAACGACTGCAGCGAACCGCAGTGACACGAAGGAGTTTATTCCGCTATTGCAGGGTGCAAACATACCTCAAGGCACAGCCGTCTTGGCGGACAAAGGATATGCTTGCGGGGAAAATCGTTCCTACCTGCAAACCCATCACCTTCAAGACGGCATCATGCACAAGGCACAACGCAACAGGGCATTGACCGAGGAAGAGAAGCAAGGAAACAAAGCAATCAGTCCGATACGGAGCACCATCGAACGCACCTTTGGCAGTATTCGCCGGTGGTTTCATGGCGGACGATGTCGATACCGGGGACTTGCCAAGACCCATACTCAAAACATTCTTGAAAGCATCGCCTTTAATTTATACAGAACCCCGGGGATAATTATGTCCTCATCTCTAGGA","10.20","14.72","41575","MAYQSKNTDEHVTFADALLSKRYRKAQNDFLNQVERLIDWRPIRTLINKKYTKRQNAIGAPAYDVILLFKMLLLETWYNLSDCALEERINDSITFSRFLGLKMEEVSPDHSTISRFRSALTELGLMDKLLAQFNKQLSRHHISVREGVLVDASLVETPHKPNGTITIEVADDREDNRSEAEKEAEEDYQKQVVRRRKGTDEEARWVYKQKRYHYGYKKHCLTNVQGIVQKVITTAANRSDTKEFIPLLQGANIPQGTAVLADKGYACGENRSYLQTHHLQDGIMHKAQRNRALTEEEKQGNKAISPIRSTIERTFGSIRRWFHGGRCRYRGLAKTHTQNILESIAFNLYRTPGIIMSSSLG","502078 503160","Member of the IS5 family of elements. A full-length ISPg1 element.TIGR ID: PG0460","ISPg1 transposase (IS1106-related transposase)","Cytoplasm","PG0420 is equivalent to the previously sequenced AB015879 in GenBANK. See also AJ130872. Residues 31-350 are 34% similar to the IS1106 transposase of N. meningitidis (AE002488).","
InterPro
IPR002559
Domain
Transposase, IS4-like
PF01609\"[147-348]TTransposase_11


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 157-302 are 97% similar to a (TRANSPOSASE PLASMID PROTEIN ELEMENT) protein domain (PD004652) which is seen in Q9ZAD0_PORGI.Residues 12-109 are 98% similar to a (TRANSPOSASE PROTEIN INSERTION ELEMENT) protein domain (PD007264) which is seen in Q9ZAD0_PORGI.Residues 303-361 are 96% similar to a (TRANSPOSASE ORF7 INSERTION SEQUENCE IS1126-LIKE GENE) protein domain (PD187845) which is seen in Q9ZAD0_PORGI.Residues 110-156 are identical to a (TRANSPOSASE ORF7 INSERTION SEQUENCE IS1126-LIKE GENE) protein domain (PD187846) which is seen in Q9ZA61_PORGI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Fri Feb 16 11:26:50 MST 2001","Mon Feb 12 16:01:32 MST 2001","Tue Jan 2 15:55:27 MST 2001","Tue Jan 2 15:55:27 MST 2001","","Mon Feb 12 16:01:32 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG0420 is virtually identical to PG1267, PG0169, PG1050, PG1062, PG0740, PG0918, PG1422, PG1662, PG0499, and PG1099.Partial similarities exist to PG0732, PG0842, PG1607, PG0731, PG0884, PG1184, PG1087, PG0763, PG1755, PG0686, PG0756, PG1798, PG1230, PG1919, PG0044, PG0689, PG1215, PG1665, PG0839, PG1895, PG0883, PG11231, PG0730, PG1159 and PG1608. ","Fri Feb 16 11:26:50 MST 2001","Mon Feb 12 16:01:32 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 147 to 348 (E-value = 9.4e-36) place PG0420 in the Transposase_11 family which is described as Transposase DDE domain (PF01609)","","34540279","","Hanley,S.A., Aduse-Opoku,J. and Curtis,M.A.A 55-kilodalton immunodominant antigen of Porphyromonas gingivalisW50 has arisen via horizontal gene transferInfect. Immun. 67 (3), 1157-1171 (1999)Maley,J. and Roberts,I.S.Characterisation of IS1126 from Porphyromonas gingivalis W83: a new member of the IS4 family of insertion sequence elementsMicrobiol. Lett. 123 (1-2), 219-224 (1994)Shibata,Y., Hayakawa,M., Takiguchi,H., Shiroza,T. and Abiko,Y.Determination and characterization of the hemagglutinin-associatedshort motifs found in Porphyromonas gingivalis multiple geneproducts. J. Biol. Chem. 274 (8), 5012-5020 (1999)","Knight,A.I., Ni,H., Cartwright,K.A. and McFadden,J.J.Identification and characterization of a novel insertion sequence, IS1106, downstream of the porA gene in B15 Neisseria meningitidis.Mol. Microbiol. 6 (11), 1565-1573 (1992)","Mon Feb 12 16:01:32 MST 2001","Mon Feb 12 16:01:32 MST 2001","1","","22","PG0460" "PG0421","504837","503533","1305","ATGATTAAAAAGCCCCATCATACCCCTTCATTATTCAGCAGTCTATCAGACATGCTGAACCAATCGCACCCACTCTACAAATTGGCCGACAAAATAGATTGGGAGAAATTCGATACGGCTTTCCGGCCTTTGTACTGTCAGCACAATGGTCGCCCGAGTAAGCCGATTCGTTTGATGTGTGGCTTGTTGATTCTCAAGCATCTTCGTAATCTCTCGGATGAATCTGTTGTAGAGCAATGGAGTGAAAATGCTTATTACCAATACTTTTGTGGTATGCAAGAGTTTGCACCCGGTGCTCCCTGTGCCTCTTCCGAATTGGTGCATTTTCGCCATCGCATTGGAGAAAAGGGGATAGAACTCATTTTTCAGGAAAGCATTCGTGTCAATAACGAAGATGATGATGAGCACCATCATGACACAGCCTTTATCGATTCGACCGTTCAGGAAAAGAATATCACCTTCCCTACCGATGCCAAGTTGCATAAAAAGATCGTGCGCAAGATTTTGGACATCGTCCATAAGTTGAATCTTCCTCTTCGCCAAAGCTATACCTTTGTTTTGAAGCGGATTTATCGCGACCAACGCTTTCGCCATCATCCCAAGAATCGCAAGAAGGCGCTGAAGGCAGACAATAAATTGCGAACAATAGCCGGACGATTGGTTCGAGAGCTCAAGCGTAATCTTGGAGATAATTCTCTCTACGCCGAATTGATTGAGAGGTTTGAAGCCATTCTTTCACAAAGACGTAACAGCCCCCAAAAGATTTATTCCATTCATGAGCCGGAGGTTCAATGCATCAGCAAAGGCAAAGAGCACAAGAAGTACGAATTCGGCAATAAGGTATCCGTCATACGCTCGGCTACGGGTATTATCCTTGAAGCCCGATCTTTTCGAAATGAGTATGACGGGCACACGATAGAAGCTTCGCCGGAACAAGTTGAACGACTCACACACAGAAAGATCAAAATACCGGCCGGGGACAGAGGTTATCGAGGCCGGAAAGAAGTTAACGGAACCCGGATTTTAATACCGGATACACCCAAGCAATCAGACAGCAGACATCAGAGGTGCAAGAAACACAAATTATTCTGCAAGCGAGCAGGCATAGAACCCACCATCGGACACTTGAAATCAGATCATCGTTTAGGCTGCAACTTTTACAAAGGATTGGCCGGGGATGCTATAAACATACTGTTGGCTGCAGCTGCTTATAACTTCAAAAGAGCCATGAAAGCTCTTTGGGACTTTATCAAAATAATAAGCCAGATGCCATTTGCCAATGGTTTCTCGCTTAAAGAGGTTTTT","10.50","30.94","50504","MIKKPHHTPSLFSSLSDMLNQSHPLYKLADKIDWEKFDTAFRPLYCQHNGRPSKPIRLMCGLLILKHLRNLSDESVVEQWSENAYYQYFCGMQEFAPGAPCASSELVHFRHRIGEKGIELIFQESIRVNNEDDDEHHHDTAFIDSTVQEKNITFPTDAKLHKKIVRKILDIVHKLNLPLRQSYTFVLKRIYRDQRFRHHPKNRKKALKADNKLRTIAGRLVRELKRNLGDNSLYAELIERFEAILSQRRNSPQKIYSIHEPEVQCISKGKEHKKYEFGNKVSVIRSATGIILEARSFRNEYDGHTIEASPEQVERLTHRKIKIPAGDRGYRGRKEVNGTRILIPDTPKQSDSRHQRCKKHKLFCKRAGIEPTIGHLKSDHRLGCNFYKGLAGDAINILLAAAAYNFKRAMKALWDFIKIISQMPFANGFSLKEVF","504861 503533","TIGR ID: PG0461","ISPgX undefined transposase","Cytoplasm","PG0421 is similar to transposases in gapped BLAST, e.g. residues 13-420 are 39% similar to AF087642 putative transposase of Sinorhizobium meliloti.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 08:39:04 MDT 2001","","Thu Jun 14 08:39:04 MDT 2001","Thu Jun 14 08:39:04 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 08:39:04 MDT 2001","Thu Jun 14 08:39:04 MDT 2001","","","Wed Feb 14 12:43:13 MST 2001","Wed Jun 20 14:04:55 MDT 2001","Wed Feb 14 12:42:11 MST 2001","","Wed Feb 14 12:42:11 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No definite paralogs found in P. gingivalis. PG0421 is weakly similar to ISPg1 transposases, e.g. residues 16-149 are 24% similar to PG1099, a predicted ISPg1 sequence.","Thu Jun 14 08:40:19 MDT 2001","Wed Feb 14 12:42:11 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Jun 20 14:02:23 MDT 2001","34540280","","","Selbitschka,W., Zekri,S., Schroder,G., Puhler,A. and Toro,N. 1999. The Sinorhizobium meliloti insertion sequence (IS) elementsISRm102F34-1/ISRm7 and ISRm220-13-5 belong to a new family of insertion sequence elements. FEMS Microbiol. Lett. 172 (1): 1-7. PubMed: 10079521. Pubmed: 10079521.","","Tue Mar 13 15:10:48 MST 2001","1","","22","PG0461" "PG0422","506370","504970","1401","ATGACTGACGCAATCAAACAATCCCTCAGGGACAAGCCCGCAGTCCGGTGGACAGCACTTATCTTAGTGGCTGCCACCATGTTTTTTGCCTACATGTTCGTGGATGTGCTTTCTCCTCTGAAAACACAGTTAGAGCAACAAGTCAATTGGAGTTCCACCGTCTTCGGCTCTTATGGCAGTAGCGAGTTCTTTATCAACGTTTTCTTCGGATTCCTCATATTGGCAGGGATCATCCTGGACCGCATGGGCGTGCGTTTCACTGCCATTTTATCCGGCAGTTTGATGCTTTTGGGTGCCCTTATTAAGGTATATGCCTTGAGTGAAGTCTTCAATGGCGGCGGCTTCGGCTACGATATGCTCAATTCCTTTTCTATGGGTTTCCCGCCATCTGCCAAGCTGGCCTGTGTCGGTTTTGCTATTTTCGGATGTGGCTGTGAAATGGCCGGCGTAACCGTTTCCCGTGCTATCGTGAAGTGGTTCCATGGCAAAGAGTTGGCTTTGGCCATGGGACTTGAGATGGCTATTGCCCGTTTGGGAGTCTTCGCCGTGTTCTGGACTTCACCTATCATTTCAAAGCAGTTCGAAGGTACGCTTCAGAGCGTTCAGGTACCGGTTATTTTCGTTACGGCACTCCTTTTCATCGGTTTGATTCTTTATGTTATCTACGGTATCCTCGATAAGAAGCTCGACCGCGAAGTGCAGGATGCAAATATGGAAGAGGAAGAGCCTTTCCGCTTCAAAGATCTCAAACAGGTGTTCGGCAATAGCATGTTCTGGATTGTTGCCCTCCTGTGCGTGCTTTACTATTCAGCCATTTTCCCCTTTCAGAAGTTTGCCACCGAGATGCTTCAGTCCAATATCGGTCTGACGGCCGAAGGAGCTGCCCGTATCTTCAGTATGTTCCCCTTGGGAGCCATGGTGCTGACGCCTTTCCTCGGCGCATTCTTGGATAAAGTCGGGAAAGGAGCCACCATGCTTATTGTCGGAGCAGTACTGATGTTTATCTGCCACCTGACATTCGCCATTTTCCCCTTTGAGAGCGGCACCACTTCTTCTCTTGCCATAGCCATTGCAGCCATCGTCGTACTGGGTATTTCTTTCTCTTTGGTACCTGCTGCTCTCTGGCCGTCGGTACCCAAGATTATCGACCCCAAAGTACTTGGCTCGGCTTATTCGGCCATTTTCTTTATTCAGAATATCGGCTTGATGGTTGTTCCCATCGTGATCGGAGCCATCCTCGACACCACGAATAAGGGTGTTGCAGCCGGCGAACCGAAGAACTATACTTTGGCGATGCTGGTTTTTGCTTCGTTCGGTATCCTCGCCTTTATCCTCGGTATTCTCCTGAAAGGTGCCGATGTGAAGAAAGGCTACGGACTCGAACTTCCCAATATCGAGAAA","7.70","1.25","50630","MTDAIKQSLRDKPAVRWTALILVAATMFFAYMFVDVLSPLKTQLEQQVNWSSTVFGSYGSSEFFINVFFGFLILAGIILDRMGVRFTAILSGSLMLLGALIKVYALSEVFNGGGFGYDMLNSFSMGFPPSAKLACVGFAIFGCGCEMAGVTVSRAIVKWFHGKELALAMGLEMAIARLGVFAVFWTSPIISKQFEGTLQSVQVPVIFVTALLFIGLILYVIYGILDKKLDREVQDANMEEEEPFRFKDLKQVFGNSMFWIVALLCVLYYSAIFPFQKFATEMLQSNIGLTAEGAARIFSMFPLGAMVLTPFLGAFLDKVGKGATMLIVGAVLMFICHLTFAIFPFESGTTSSLAIAIAAIVVLGISFSLVPAALWPSVPKIIDPKVLGSAYSAIFFIQNIGLMVVPIVIGAILDTTNKGVAAGEPKNYTLAMLVFASFGILAFILGILLKGADVKKGYGLELPNIEK","506370 504970","TIGR ID: PG0462","conserved hypothetical protein","Inner membrane, Cytoplasm","Residues 16 to 414 share 28% identity with gb|AAF50582.1| (AE003559) CG8602 gene product in Drosophila melanogaster.The region shares weak identity with a few other vertebrate conserved hypothetical proteins.This sequence is similar to BT4379.","
InterPro
IPR007114
Family
Major facilitator superfamily
PS50850\"[19-454]TMFS
InterPro
IPR011701
Family
Major facilitator superfamily MFS_1
PF07690\"[23-414]TMFS_1
noIPR
unintegrated
unintegrated
PTHR10074\"[16-105]T\"[129-457]TPTHR10074
PTHR10074:SF10\"[16-105]T\"[129-457]TPTHR10074:SF10
SSF103473\"[1-467]TSSF103473


","BeTs to 6 clades of COG0477COG name: PermeasesFunctional Class:� G,E,RThe phylogenetic pattern of COG0477 is AMTKYQVCEBRHUJGPo-INXNumber of proteins in this genome belonging to this COG is 5","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Sat Feb 24 20:49:10 MST 2001","Mon Jan 5 14:30:29 2004","Mon Jan 5 14:30:29 2004","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Sat Feb 24 20:49:10 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Sat Feb 24 20:49:10 MST 2001","34540281","","","","","","1","","22","PG0462" "PG0423","507697","506411","1287","ATGATGACTTACGAAGAAGCTATCCGGTATCTCTTTACCGCTACCCCTGTCTTCCAACACCAAGGGGGCAGTGCATATAAACCCGGGCTCGGTACCGTAGAGACCATAGACCGCGTGCTGGGACATCCCCACAAGGCTTACCGAACGATACATGTGGCCGGTACTAACGGCAAAGGCTCTACCGCCTCTACACTGGCTGCTATCTTACAAGTTGCCGGTATGCGGGTAGGCTTGTTTACATCTCCTCATTTGGTGGATTTTCGCGAGCGTATTCGTGTAAACGGCATTTGCATTACAGAAGAATACGTAGTGGATTTCTGCGAGCGAACGCGTGAGATGGTGACAACGCTGCATCCCTCTTTCTTCGAACTGACTACGATGATGGCTTTCGACTATTTCCGGCACGCTCAGGTCGATATGGCACTCATCGAAGTGGGGATGGGAGGCCGTTTGGATAGTACCAATATCATTACTCCCATCCTGAGTATCATTACGAACATCGGCAAGGATCATGTGCAGTTCCTTGGGGATACGCCGGAGAAGATAGCTTTCGAAAAGGCCGGGATCATCAAGTCCGGAGTCCCCGTTGTGGTCGGCCGAGCCGAGGGAGGTGTGCGCCATGCCTTTCAGCACAAAGCCGATGAGGAAAGAACGGATATTGTCTTTGCTCAAGAATCGGGCGTAATCATTTCCTCGACATTAGAAAACGGTTGCTATACATACCAAACACGGGACTATGGATCGGTTCGTGGCGAACTGACCGGCTTGGCTCAGGAGGAGAACGCGCGTACGATTCTCTGTGCCGTGGAGGTCCTTTCCAAACGATGCGGTCTGAATCTTTCTTCGGAACACGTCCGTGAAGGATTTGCCCACGTTACGGCAATGTCAGGGCTGTTTGGCCGTTGGCAGCAGTTGGCCGAGCAGCCACGGATCGTATGCGATACCGGACACAACGAAGACGGATTCCGTCTGATCACCGAGCAACTGAGACGACAGACTTACCGACAGCTGCGTATCGTCTTCGGCATGGTCAATGACAAGGACATCACGGCCGTATTGGCGCTCTTGCCTCGGGAGGCCGTTTATTATTTCACCCGTGCTTCGGTCGATAGAGCCTTGCCGGAGGACGATCTGCGGCAGCAGGCTGCTGCTTTCGGCTTGGTCGGTAATACCTACTCTTCCGTTCGGGAGGCACTCGAAGCTGCCCGACGAGAGGCGCATGCGGATGATTTTATTTTCGTCGGAGGGAGCAATTTCATCGTGGCCGATTTGTTAGAAGAATTCAAA","6.20","-6.88","47655","MMTYEEAIRYLFTATPVFQHQGGSAYKPGLGTVETIDRVLGHPHKAYRTIHVAGTNGKGSTASTLAAILQVAGMRVGLFTSPHLVDFRERIRVNGICITEEYVVDFCERTREMVTTLHPSFFELTTMMAFDYFRHAQVDMALIEVGMGGRLDSTNIITPILSIITNIGKDHVQFLGDTPEKIAFEKAGIIKSGVPVVVGRAEGGVRHAFQHKADEERTDIVFAQESGVIISSTLENGCYTYQTRDYGSVRGELTGLAQEENARTILCAVEVLSKRCGLNLSSEHVREGFAHVTAMSGLFGRWQQLAEQPRIVCDTGHNEDGFRLITEQLRRQTYRQLRIVFGMVNDKDITAVLALLPREAVYYFTRASVDRALPEDDLRQQAAAFGLVGNTYSSVREALEAARREAHADDFIFVGGSNFIVADLLEEFK","507697 506411","TIGR ID: PG0463","folylpolyglutamate synthase","Cytoplasm","Residues 1 to 385 share 32% identity with dbj|BAB06756.1| (AP001517), a folyl-polyglutamate synthetase in Bacillus halodurans.Residues 27 to 373 share 33% identity with gb|AAB59021.1| (L04520), a folyl-polyglutamate synthetase in Bacillus subtilis.Residues 2 to 426 share 31% identity with gb|AAD35259.1|AE001701_12 (AE001701), a folylpolyglutamate synthase/dihydrofolate synthase in Thermotoga maritima.This region shares a similar degree of identity with a number of additional folylpolyglutamate synthases.","
InterPro
IPR001645
Family
Folylpolyglutamate synthetase
TIGR01499\"[30-428]TfolC
PS01012\"[142-157]?FOLYLPOLYGLU_SYNT_2
InterPro
IPR002110
Repeat
Ankyrin
PR01415\"[46-58]T\"[135-147]TANKYRIN
InterPro
IPR013221
Domain
Mur ligase, middle region
PF08245\"[50-272]TMur_ligase_M
noIPR
unintegrated
unintegrated
G3DSA:3.40.1190.10\"[26-295]TG3DSA:3.40.1190.10
G3DSA:3.90.190.20\"[300-426]TG3DSA:3.90.190.20
PTHR11136\"[34-428]TPTHR11136
SSF53244\"[300-429]TSSF53244
SSF53623\"[2-293]TSSF53623


","BeTs to 10 clades of COG0285COG name: Folylpolyglutamate synthaseFunctional Class: HThe phylogenetic pattern of COG0285 is ----Yqvcebrhuj---l--xNumber of proteins in this genome belonging to this COG is 1","***** IPB001645 (Folylpolyglutamate synthase) with a combined E-value of 9.8e-60. IPB001645A 49-83 IPB001645B 122-157 IPB001645C 162-195","Residues 339-425 are 44% similar to a (SYNECHOCOCCUS PCC7942 PHOV ALKALINE) protein domain (PD062325) which is seen in Q55319_SYNP7.Residues 27-197 are 44% similar to a (FOLYLPOLYGLUTAMATE SYNTHASE SYNTHETASE) protein domain (PD003937) which is seen in FOLC_BACSU.Residues 246-426 are 25% similar to a (SYNTHASE FOLYLPOLYGLUTAMATE FOLC PROTEIN) protein domain (PD008596) which is seen in FOLC_ECOLI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Feb 27 13:22:42 MST 2001","Tue Feb 27 13:22:42 MST 2001","Fri Mar 9 16:07:38 MST 2001","Tue Feb 27 13:22:42 MST 2001","Tue Feb 27 13:22:42 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 41 to 416 share 22% identity with PG0518, an N-acetylymuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase.","Tue Feb 27 13:22:42 MST 2001","Tue Feb 27 13:22:42 MST 2001","-47% similar to PDB:1O5Z Crystal structure of Folylpolyglutamate synthase (TM0166) from Thermotoga maritima at 2.10 A resolution (E_value = 5.6E_44);-47% similar to PDB:1FGS FOLYLPOLYGLUTAMATE SYNTHETASE FROM LACTOBACILLUS CASEI (E_value = 3.9E_37);-47% similar to PDB:1JBV FPGS-AMPPCP complex (E_value = 3.9E_37);-47% similar to PDB:1JBW FPGS-AMPPCP-folate complex (E_value = 3.9E_37);-47% similar to PDB:2GCA apo form of L. casei FPGS (E_value = 1.1E_36);","","","Residues 13 to 286 (E-value = 5.1e-10) place PG0423 in the Mur_ligase family which is described as Mur ligase family, catalytic domain (PF01225)","Fri Mar 9 16:07:38 MST 2001","34540282","","","","","","1","","22","PG0463" "PG0424","508965","507697","1269","ATGGAAAAAGTGGATGTACTTCTCGGCCTGCAATGGGGCGATGAAGGAAAAGGAAAAATAGTGGATGTACTGACTCCGCACTACGATATTGTCGCTCGCTTTCAAGGTGGCCCCAATGCCGGACATACGCTTGAGTTCAACGGGGAGAAATACGTGCTTCGTTCCATTCCTTCGGGAATCTTCCAGGGTGAGAAAACGAATGTCATAGGCAATGGAGTGGTACTCGATCCCCTGCTTTTCAAGGAAGAAGCCGAAGCTCTTGCCCGCAGCGGTCACGATCTGACCAAGCGTCTCGTGATCTCGCGCAAGGCCCACCTCATTATGCCTACGCATCGGCTGTTGGATGCTGCCAACGAAATGGCTAAGGGAAGCGGCAAGATCGGAACCACAGGCAAAGGGATCGGCCCCACATATACGGACAAAGTGAGCCGCAACGGCTTGCGTGTCGGAGATTTGGAACACGGCTTCGAAGAGGCCTATTCGGTGGCCAAGGAGCGTCATCTTCGCATACTGAATTCCCTGAACTATCCTACGGACAAGCTGGCGGATCTGGAGGAACGCTGGATGGAGGCTACAAAATATCTGCGCAAGTTTGAATTCGTGGACAGTGAATTTCTGATCAATGGTGCCCTTTTGTCCGGCAAGAAGGTTTTGGCCGAAGGAGCCCAAGGTTCGCTCTTGGACATTGACTTCGGTTCTTACCCGTTCGTGACCAGTAGCAATACGATATGTGCCGGCTGTTGTACCGGCTTGGGAGTAGCTCCTCGCAATGTGGGCGATGTGTACGGGATATTCAAGGCCTATTGCACGCGCGTCGGAGCAGGGCCTTTCCCAACGGAGCTGTTCGATGAGACGGGAGACAAGCTCTGTGAGTTGGGACGCGAATTCGGCTCTGTGACGGGACGCAAACGCCGGTGCGGCTGGATAGACCTCGTAGCCTTGCGCTACACCATTATGTTGAATGGTGTGACCAAGCTGATCATGATGAAAAGCGATGTCATGGATCTTTTCCCCACGATCAAGGCTTGCGTGGCATACGAGATAGACGGCAAGGAGACACGCAATTTCCCCTTCCATCTGACAGAAGGGGTAACGCCCGTTTACAAGGAACTCCCCGGTTGGCAGCAGTCAATGACAAATGTGGTTTCCGAGGCTGATTTCCCCAAAGAATTTAGCGACTATATCGCCTTCTTGGAAAAAGAATTGGGAGTCGGTATCGCTATCGTTTCCGTTGGCCCCGACCGAGAGCAGACCATCATCCGGCAGGCA","6.20","-4.37","46563","MEKVDVLLGLQWGDEGKGKIVDVLTPHYDIVARFQGGPNAGHTLEFNGEKYVLRSIPSGIFQGEKTNVIGNGVVLDPLLFKEEAEALARSGHDLTKRLVISRKAHLIMPTHRLLDAANEMAKGSGKIGTTGKGIGPTYTDKVSRNGLRVGDLEHGFEEAYSVAKERHLRILNSLNYPTDKLADLEERWMEATKYLRKFEFVDSEFLINGALLSGKKVLAEGAQGSLLDIDFGSYPFVTSSNTICAGCCTGLGVAPRNVGDVYGIFKAYCTRVGAGPFPTELFDETGDKLCELGREFGSVTGRKRRCGWIDLVALRYTIMLNGVTKLIMMKSDVMDLFPTIKACVAYEIDGKETRNFPFHLTEGVTPVYKELPGWQQSMTNVVSEADFPKEFSDYIAFLEKELGVGIAIVSVGPDREQTIIRQA","508965 507697","TIGR ID: PG0464","adenylosuccinate synthetase (IMP-aspartate ligase) (ADSS) (AMPSASE)","Cytoplasm","Residues 6 to 420 share 45% identity with gb|AAC77134.1| (AE000490), an adenylosuccinate synthetase in Escherichia coli K12.Residues 6 to 422 share 43% identity with emb|CAB08565.1| (Z95324), purA in Mycobacterium tuberculosis.Residues 1 to 420 share 44% identity with gb|AAK03022.1| (AE006133), PurA in Pasteurella multocida.This regions shares a similar degree of identity with a number of additional bacterial adenylosuccinate synthetases, e.g. BT1843.","
InterPro
IPR001114
Family
Adenylosuccinate synthetase
PD001188\"[6-77]TAsucc_synthtase
PTHR11846\"[1-421]TAsucc_synthtase
PF00709\"[4-420]TAdenylsucc_synt
SM00788\"[4-420]TAdenylsucc_synt
TIGR00184\"[6-421]TpurA
PS00513\"[133-144]TADENYLOSUCCIN_SYN_2
PS01266\"[11-18]TADENYLOSUCCIN_SYN_1
noIPR
unintegrated
unintegrated
G3DSA:3.40.440.10\"[2-264]TG3DSA:3.40.440.10
G3DSA:3.90.170.10\"[265-421]TG3DSA:3.90.170.10
SSF52540\"[1-421]TSSF52540


","BeTs to 12 clades of COG0104COG name: Adenylosuccinate synthaseFunctional Class: FThe phylogenetic pattern of COG0104 is amtkyqvcebrhuj-------Number of proteins in this genome belonging to this COG is 1","***** IPB001114 (Adenylosuccinate synthetase) with a combined E-value of 1.2e-124. IPB001114A 18-54 IPB001114B 97-117 IPB001114C 127-148 IPB001114D 217-255 IPB001114E 276-316 IPB001114F 317-343 IPB001114G 384-419","Residues 6-389 are 45% similar to a (LIGASE ADENYLOSUCCINATE SYNTHETASE PURINE) protein domain (PD001188) which is seen in PURA_ECOLI.Residues 6-119 are 37% similar to a (ADENYLOSUCCINATE SYNTHETASE EC 6.3.4.4) protein domain (PD176155) which is seen in PURA_METJA.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Mar 13 15:16:53 MST 2001","Mon Dec 8 16:35:45 2003","Fri Mar 9 15:48:30 MST 2001","Tue Feb 27 13:28:26 MST 2001","Tue Feb 27 13:28:26 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 27 13:28:26 MST 2001","-59% similar to PDB:1ADE STRUCTURE OF ADENYLOSUCCINATE SYNTHETASE PH 7 AT 25 DEGREES CELSIUS (E_value = 7.5E_94);-59% similar to PDB:1ADI STRUCTURE OF ADENYLOSUCCINATE SYNTHETASE AT PH 6.5 AND 25 DEGREES CELSIUS (E_value = 7.5E_94);-59% similar to PDB:1CG0 STRUCTURE OF ADENYLOSUCCINATE SYNTHETASE FROM E. COLI COMPLEXED WITH HADACIDIN, GDP, 6-PHOSPHORYL-IMP, AND MG2+ (E_value = 7.5E_94);-59% similar to PDB:1CH8 STRUCTURE OF ADENYLOSUCCINATE SYNTHETASE FROM E. COLI COMPLEXED WITH A STRINGENT EFFECTOR, PPG2':3'P (E_value = 7.5E_94);-59% similar to PDB:1CIB STRUCTURE OF ADENYLOSUCCINATE SYNTHETASE FROM E. COLI COMPLEXED WITH GDP, IMP, HADACIDIN, AND NO3 (E_value = 7.5E_94);","","","Residues 4 to 420 (E-value = 5.7e-194) place PG0424 in the Adenylsucc_synt family which is described as Adenylosuccinate synthetase (PF00709)","Fri Mar 9 15:48:30 MST 2001","34540283","","","Wolfe,S.A. and Smith,J.M. 1988. Nucleotide sequence and analysis of the purA gene encoding adenylosuccinate synthetase of Escherichia coli K12. J. Biol. Chem. 263 (35): 19147-19153. PubMed: 3058695.","","Tue Mar 13 15:16:53 MST 2001","1","","22","PG0464" "PG0425","509494","508997","498","ATGATAGTCACATCACTGGAAGATCTTCGCTCAAGATTGCGTGCATATGTGTCGGAGAACGGCTTGCGTCATACCCCCGAACGATACAGCATTCTTGAAGTCGCATATAATCTGAAGAAGATATTCACGCCGGACGACTTGTTCGATCTCACTCGCGAGAATGGCTTGCCTGTAAGTCTTTCTACGGTCTATAATACCCTTACCTTGCTCGAACGCTGCGGGATCGTTCTGCGTTTGCCTTCTCCCGAAACCAAATATCAGTACTTGATGGCTTCATTTGCAGAGCAGTGTCCGCTGCTTTTCTGTACCGAATGTGCACAATTTTCTACCTACTACCGACGAAATGTGAAGTCGATACTGGCCGACAAGGATCTCAGACCACCACGCTTCTCTTATAGGCAGGCCATCATTTGCCTCTATGGTATATGCGACAAATGCAGGAAGAAGCAGTCGGCCCTCAAAAAGGCGGCGGACAAAGCCGCTCCCAAGAAGAAAAAA","10.10","11.90","19141","MIVTSLEDLRSRLRAYVSENGLRHTPERYSILEVAYNLKKIFTPDDLFDLTRENGLPVSLSTVYNTLTLLERCGIVLRLPSPETKYQYLMASFAEQCPLLFCTECAQFSTYYRRNVKSILADKDLRPPRFSYRQAIICLYGICDKCRKKQSALKKAADKAAPKKKK","509596 508997 [Delay by 189 559 203 0]","TIGR ID: PG0465","ferric uptake regulation protein (ferric uptake regulator)","Cytoplasm","Residues 1 to 166 share 100% identity with gb|AAF89746.1| (AF171224), a ferric uptake regulator in Porphyromonas gingivalis.Residues 13 to 148 share 27% identity with emb|CAB82848.1| (AJ276581), a ferric uptake regulator in Anabaena PCC7119.Residues 5 to 107 share 25% identity with gb|AAD05968.1| (AE001473) ferric uptake regulation protein in Helicobacter pyloriJ99.This region share a similar degree of identity with a number of additional bacterial ferric uptake regulation proteins.","
InterPro
IPR002481
Family
Ferric-uptake regulator
PD002003\"[45-146]TFUR
PF01475\"[19-133]TFUR
noIPR
unintegrated
unintegrated
SSF46785\"[11-145]TSSF46785


","BeTs to 9 clades of COG0735COG name: Ferric uptake regulation proteinFunctional Class: PThe phylogenetic pattern of COG0735 is a----QVCEBRhujgpo----Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 08:42:49 MDT 2001","","Thu Jun 14 08:42:49 MDT 2001","Thu Jun 14 08:42:49 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 08:42:49 MDT 2001","Thu Jun 14 08:42:49 MDT 2001","","","Thu Apr 26 17:42:12 MDT 2001","Wed Jun 20 14:01:47 MDT 2001","Tue Mar 13 15:19:21 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 27 13:34:53 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 19 to 133 (E-value = 1.7e-05) place PG0425 in the FUR family which is described as Ferric uptake regulator family (PF01475)","Wed Jun 20 13:59:36 MDT 2001","34540284","","Karunakaran,T., Simpson,W. and Genco,C.A. Cloning and characterization of Porphyromonas gingivalis A7436 ferric uptake regulator (fur) gene. Unpublished","","Tue Mar 13 15:19:21 MST 2001","","1","","22","PG0465" "PG0426","510335","509583","753","ATGGAGCGTTGCACTCACTTGTTAGGCGACTCCACTATGCCTTGCAACGATATTAAAATCCTGTTTGAATATCCATCGGACAGCATTCCTCACGCTATCGCCGATTCGGTGAGGCGGAATATCCTGAATGCTCTGTTCGGCCCGGCGTATGCATCCATGTCGCCTTCCGAGGCTATGTCGGCTTATGCTGCTGCCAGCGATTCCACCTATTTGTCGGATATGGAACCTTTGCTGAAGGAGGAGCTTGCGCTCAAGCCCGATTACAGACCGGACTTGGGGCTTTATGCCTATGTCGATCACATAACGGGCAAGGTCGTTTTCAGGCAAAACAGTCTCTTGGTCTATGAGATCGAAGCTTTCAAATACATGGGCGGTAGTCATGGTTATGGCGACGTTGCATATCTCAACCTCGATTTGCGTACCGGCAAGCAGATTCTTTTGAAAGACATCATCGCGCAGGGCAAAGATGCTGCTCTCACCGATTTGCTCTGGAAGCAGTTAATGGCAGACCAAGGGGTTTCTTCTTTGGAAAGCCTCAACGAAATGGGCTATGGTACCTTGGGCGATCTTTATCCTACGGACAATTTCGGAATCTCGGAGCGAGGTATTACTTTCCTCTACAATGAGTACGAGATCGCTCCCTATGCCATGGGGCCGATACAGATTACGCTGTCGTTCGATTCGCTTGCTCCGATTCTCAAGGAGGATTCGCCCACTGCCTTGCTCTCTGCCGGCAAGAATGGATCGAAAAGA","4.50","-12.12","27592","MERCTHLLGDSTMPCNDIKILFEYPSDSIPHAIADSVRRNILNALFGPAYASMSPSEAMSAYAAASDSTYLSDMEPLLKEELALKPDYRPDLGLYAYVDHITGKVVFRQNSLLVYEIEAFKYMGGSHGYGDVAYLNLDLRTGKQILLKDIIAQGKDAALTDLLWKQLMADQGVSSLESLNEMGYGTLGDLYPTDNFGISERGITFLYNEYEIAPYAMGPIQITLSFDSLAPILKEDSPTALLSAGKNGSKR","510452 509583","TIGR ID: PG0466","conserved hypothetical protein","Cytoplasm","Its nearest neighbor in the NR database is gi:53713317 from Bacteroides fragilis YCH46.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 08:59:51 MDT 2001","","Thu Jun 14 08:59:51 MDT 2001","Thu Jun 14 08:59:51 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 08:59:51 MDT 2001","Thu Jun 14 08:59:51 MDT 2001","","","Wed Mar 2 11:25:23 2005","Wed Mar 2 11:25:23 2005","Mon Feb 26 08:53:22 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1-238 are 30% similar to PG1149, a hypothetical protein.","Thu Jun 14 09:00:51 MDT 2001","Mon Feb 26 08:53:22 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Jun 20 13:56:30 MDT 2001","34540285","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Wed Mar 2 11:25:23 2005","","1","","22","PG0466" "PG0427","511475","510468","1008","ATGACGAACACGGCACAGCTCTATCCTTACATATTCAATCCCATTCTTCGACCGGTCGTGTGGGGCGGCCGCAGGATACGCCCTTTCAAGGGAATGGAGCCGACCGACGAAAACATCGGAGAAAGCTGGGAGATTTCGCATGTGAGCGACCATTATTCGGTCGTTGCAAACGGGCCTCTTGCCGGTAAGACGATAGACGACTTGCTGGTGTATCATGGCGAAGATCTCCTTGGCCGGCACGTATTCGAGCGGTATGGCCGCAAATTTCCCCTATTGATCAAGTTCATCGATGCACGCGATGATCTTTCCGTCCAGGTTCATCCCGATGACCGGTTGGCAGCCGAGAGGCACCAATCCTTCGGCAAGACGGAGATGTGGTACGTGGTACATGCCGATCCGGATGCTCGTCTTTATTCCGGTTTTTCTACGCAGTCTTCACCCGAAGATTACGAAAGGCGTGTGGCCGAAGGCACGATCATGCAGGCCTTGGCCGAATATAAGGTCGAGGCGGGAGACGTCTTCTTCCTGCCGGCCGGTCGGATACACGCCATCGGTGCCGGCTGCTTTGTAGCCGAGATACAGCAGACCTCCGACATTACCTATCGTATCTACGATTATGACCGCCCCGACGCAAACGGCCGCTTACGCGAACTGCATACCGAATGGGCTAAGGATGCCATCGACTATCGGATGGAAGATTCGTACAAGACTGCGTATACGCATCGTTCGAATGCTGCCGTCCGATTGGCCGACTGTCCGTATTTCCGCACTGCTCTGTTGGAGCTGGACAAGCCGATCAGGCGCGACCTTGTGCAGGAAGACAGCTTCGTTATATATATATGTGTGGAGGGAGGCCTTACCCTCACGGACAAGAGGGGCCATCTCCTCGAACTTCGACAGGGACAGAGTGCCCTCGTTCCGGCCCTGACTGCCGATGTAGAGCTTGCCCCTGACTCTCGAACAGGGTGCAAGCTGCTTGAAACCTATATCCCTGCTTCCACTAACTGC","5.30","-10.56","38141","MTNTAQLYPYIFNPILRPVVWGGRRIRPFKGMEPTDENIGESWEISHVSDHYSVVANGPLAGKTIDDLLVYHGEDLLGRHVFERYGRKFPLLIKFIDARDDLSVQVHPDDRLAAERHQSFGKTEMWYVVHADPDARLYSGFSTQSSPEDYERRVAEGTIMQALAEYKVEAGDVFFLPAGRIHAIGAGCFVAEIQQTSDITYRIYDYDRPDANGRLRELHTEWAKDAIDYRMEDSYKTAYTHRSNAAVRLADCPYFRTALLELDKPIRRDLVQEDSFVIYICVEGGLTLTDKRGHLLELRQGQSALVPALTADVELAPDSRTGCKLLETYIPASTNC","511475 510468","TIGR ID: PG0468","mannose-6-phosphate isomerase","Cytoplasm","Residues 9 to 237 share 39% identity with gbAAK04867.1AE006310_9 (AE006310) mannose-6-phosphate isomerase in Lactococcus lactis subsp. lactis.Residues 8 to 227 share 41% identity with embCAB12406.1 (Z99107) similar to mannose-6-phosphate isomerase Bacillus subtilis.Residues 9 to 227 share 41% identity with dbjBAA04021.1 (D16594) Mannosephosphate Isomerase in Streptococcus mutans.The region shares identity with several other bacterial mannose-6-phosphate isomerases.","
InterPro
IPR001250
Family
Mannose-6-phosphate isomerase, type I
PF01238\"[11-293]TPMI_typeI
TIGR00218\"[9-325]TmanA
InterPro
IPR011051
Domain
Cupin, RmlC-type
SSF51182\"[6-330]TRmlC_like_cupin
InterPro
IPR014628
Family
Mannose-6-phosphate isomerase, Firmicutes type, short form
PIRSF036894\"[9-328]TPMI_Firm_short
InterPro
IPR014710
Domain
RmlC-like jelly roll fold
G3DSA:2.60.120.10\"[2-236]TRmlC-like_jellyroll
noIPR
unintegrated
unintegrated
PTHR18964\"[22-284]TPTHR18964
PTHR18964:SF1\"[22-284]TPTHR18964:SF1


","BeTs to 6 clades of COG1482COG name: Phosphomannose isomeraseFunctional Class: GThe phylogenetic pattern of COG1482 is a---y-v-eBr-----o----Number of proteins in this genome belonging to this COG is 1","***** IPB001250 (Phosphomannose isomerase type I) with a combined E-value of 1.3e-15. IPB001250A 89-103 IPB001250B 108-134 IPB001250C 162-200","Residues 9-307 are 33% similar to a (ISOMERASE MANNOSE-6-PHOSPHATE) protein domain (PD004391) which is seen in O31646_BACSU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Sat Feb 24 20:44:04 MST 2001","Tue Jul 29 18:23:00 2008","Thu Apr 26 17:48:22 MDT 2001","Sat Feb 24 20:44:04 MST 2001","Sat Feb 24 20:44:04 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Jul 29 18:23:00 2008","-49% similar to PDB:1QWR Crystal Structure Analysis of the Mannose 6-Phosphate Isomerase from Bacillus subtilis (E_value = 2.5E_41);-46% similar to PDB:1ZX5 The structure of a putative mannosephosphate isomerase from Archaeoglobus fulgidus (E_value = 7.5E_14);","","","Residues 11 to 293 (E-value = 4.7e-07) place PG0427 in the PMI_typeI family which is described as Phosphomannose isomerase type I (PF01238)","Thu Apr 26 17:48:22 MDT 2001","34540286","","","","","","1","","22","PG0468" "PG0428","511749","511501","249","ATGAAAAGAATCAATATCACCATCGGCTTTCTCTTTATATACTTCGTAGTGATGTCCGTATTGGGATACCCGCGCGAAAGGATAGCTCCGGACGGTGCCGACCGGCTGGTGACGTATCTGTTGGTTTGCGCTTTGGAGCTGGTCGTACTCATCCTATTACGGTGGGTATTGATCCGGCGGTACAAGATGCGCGAGCGTCGCCGGCACGATATGGAACAGTATGCCCGATACGATGAAAAACCCGACGAA","10.30","4.18","10090","MKRINITIGFLFIYFVVMSVLGYPRERIAPDGADRLVTYLLVCALELVVLILLRWVLIRRYKMRERRRHDMEQYARYDEKPDE","511749 511501","TIGR ID: PG0469","hypothetical protein","Cytoplasm, Inner membrane","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-22]?signal-peptide
tmhmm\"[5-23]?\"[37-57]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","","","Tue Feb 20 13:11:41 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 20 13:11:41 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Feb 20 13:11:41 MST 2001","34540287","","","","","","1","","22","PG0469" "PG0428.1","511903","512205","303","GTGAAAGAAGTAGATAGCTACGACCGTTCTTGGATGAAAAAGGCGGAAGCCGGCCACAGAGAACGGATGCAAGGACTACAGAAAAGTCGCACCGTCTCGTCTGTCGGGTTTGGATTCGTTCACCATTTTACGGACCAAAACTCACTCATTTCTCGCCCCTGTTTTTCTAAAAAATGGAACCAAAACTTTTTCGTTCCGGCGCGAGAATTTTTTGTTTGCCGCGCCAAAAACAAAAAATTTACGCGCCACGTTTTTTGGAGTAGCAAACGGGAAAATTTTCGTGTGGCGTGTACTGAGAAGAAT","","","12036","VKEVDSYDRSWMKKAEAGHRERMQGLQKSRTVSSVGFGFVHHFTDQNSLISRPCFSKKWNQNFFVPAREFFVCRAKNKKFTRHVFWSSKRENFRVACTEKN","","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm, Periplasm","No hit found in gapped BLAST.","
InterPro
IPR012456
Family
Protein of unknown function DUF1661
PF07877\"[67-94]TDUF1661


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Thu Apr 5 18:30:44 MDT 2001","","Tue Feb 20 15:32:03 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 41 to 85 are 55% similar to PG0713.","Tue Feb 20 15:32:03 MST 2001","Thu Apr 5 18:30:44 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Apr 5 18:30:44 MDT 2001","","","","","","","1","","22","" "PG0429","512429","513490","1062","TTGCCTATGAATAGGTTGATATCCCACATCGAACGCAGCATCAGTATACATAAATGTGTAGTGGTGCCGAGCCTTGGCGGTTTTGTTGCCGAGCTGTTGCCGGCATGTTACGACCGCGATGACAATCTTATTTACCCTCCCAAAGAAGAACTTCGATTCAATGCTGCCCTCTCGCTTCGGGACGGCATCTTGGAGGATAGCTACGCACGTGCTTATGGCATCTCGCACCGCCGCGCCAGAGTGATGCTCGATGACGATGTGCGCACTTTGCGTGCCGAACTGGTACGTGCCGGACGTGTCAGCTTGGAAAAGATGGGCGAACTGACCTTGAATCCGGAGGGACAAATCAGCTATTCGCACCGAAGTGAAGCGGAGGAAGGATCGGGTTTTTCCTACGGTTTGGCTCCTTGCTCGTTGCCTCGTTTGGCTGAGTCTTTCGACGAAGCACGGCCCTTTGCAGAAAGGGAGAAGGAGGCCTTGTCGGTCGGTCGGTCGGATTATTTCTACCTGAAGATCCATAAGCGTACCGGCATGATGGCGGCTGCGGCTGTGATGTCAGCCGTATTGCTCGTTGTCCCTTGGGGGCAAATCTCCTCGTCGGATAAGTTTGCCGCCAGTTTTGTCCCTACCGAGCTGACAGCCAAGAGCGTATGGAAAGATACCGAAGCCCGGCCGGTGCAGGTGGTGACGGCGAAGCCTGCTTCCGTTGCGACCACGGCTGATTCACAGCCAATAGAGGCTACAGCCTCCAAACCGGCCGAATCGCCCAACCAACTCTCCACGGATGTAGCCGAAGGCGGTGTGCCCGTGATGCACGAGCCTGTAGGATCCAAATGCTATTATGTGGTAGTGGGCACATTCGATACGAAGAAGAAAGCCCAGGAGTTTTACCGCATGAGCATTGATAAGGCCATTATGCCGAATGCTGTGGTGCTGCTTAGCTCCAATAAGGCACGTATTTATTCCGATCGCTTTGCTACGGCGGACGAAGCACAGACTTATATCCGTTCGATGAAAGATAAACACAGGCTGTTTGCCGATGCTTGGGTGTATGCCGGACGA","7.50","1.52","39096","LPMNRLISHIERSISIHKCVVVPSLGGFVAELLPACYDRDDNLIYPPKEELRFNAALSLRDGILEDSYARAYGISHRRARVMLDDDVRTLRAELVRAGRVSLEKMGELTLNPEGQISYSHRSEAEEGSGFSYGLAPCSLPRLAESFDEARPFAEREKEALSVGRSDYFYLKIHKRTGMMAAAAVMSAVLLVVPWGQISSSDKFAASFVPTELTAKSVWKDTEARPVQVVTAKPASVATTADSQPIEATASKPAESPNQLSTDVAEGGVPVMHEPVGSKCYYVVVGTFDTKKKAQEFYRMSIDKAIMPNAVVLLSSNKARIYSDRFATADEAQTYIRSMKDKHRLFADAWVYAGR","512429 513490","TIGR ID: PG0471","conserved hypothetical protein","Cytoplasm","Its nearest neighbor in the NR database is gi:29346237 from Bacteroides thetaiotaomicron VPI-5482.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Mar 3 09:58:42 2005","Thu Mar 3 09:58:42 2005","Tue Feb 20 13:13:41 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 20 13:13:41 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Feb 20 13:13:41 MST 2001","34540289","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Thu Mar 3 09:58:42 2005","","1","","22","PG0471" "PG0430","513480","514472","993","ATGCCGGACGATGAAAAAATAAAATTGCGATACTCACCGGAAGAGTCGGCGCGCCTTATCAAAGAAGAGGCGCGCCGACTTGGTTTTAGTGCTTGTGGGTTTGCCGAAGCGCAGGCCTTGCCGCCATCCGTGGTAGGGACTTACGAGAAGTTTCTGTCCGAGGGTCGGCATGGGGAAATGGACTATCTGGAGCGCAACAGGGAGCTTCGCTATTCGCCGGCAGAGCTGTTGCCGGGTACTCGTACGGTTATCTCCGTGGCACTGAACTATTACCCCAAGATCAAACAACCGGCCTCGGCTCCACAAATAGCTTACTATGCTTATGGAAAAGACTACCACAAGGTCGTCAAACGCCTCTTGGACAAGCTACTGGATTATATTCGTCGGGAGGTCTGCCCCTCCGTCTCGGGACGGTCTTTCAGCGACTCTGCTCCTATTGCCGAACGCTATTGGGCTTGCCGTGCAGGTATCGGCTGGGTAGGGCGAAGCGGCATGCTCATTTTGCCCCGAGGGGGAACTTTCTTTTTCTTGGGAGAGCTATTGGTGGATATCGATCTGCCTCCCGATGCTCCGATGCCATCGCGCTGTGGAGCTTGCCGGAACTGTATCGAGAGTTGTCCCACGGGAGCTATTTCCGAAGAGGGCATGGACTCTCGTCTCTGTGTGAGCTATCTGACGATAGAGCATGAGGGGGAGATCCCTCCGGAACTGGTCGGTAAGCTGGGCAACCGTTTCTACGGATGCGACAGTTGCCAGCTCTGCTGCCCTTGGAACCGATATGCCCATCCATCCGAGGTCGAGGCATTTGTACCGAGGGAGGCTCTGTTTACGTTCGACAGGGACGATCTCGTTTCTTTGGACGAAGAGAAGTACCTGCATTTCTTCGCCGGTTCGCCTATGAAGCGAGCCGGACTCGATGGCCTTCGGCGCAATGCGCGAGCTTTGGAGCAGGGAGATAAGAAAGAGGATGAGCAGCCGACTGACGAAGACGGA","5.20","-8.33","37190","MPDDEKIKLRYSPEESARLIKEEARRLGFSACGFAEAQALPPSVVGTYEKFLSEGRHGEMDYLERNRELRYSPAELLPGTRTVISVALNYYPKIKQPASAPQIAYYAYGKDYHKVVKRLLDKLLDYIRREVCPSVSGRSFSDSAPIAERYWACRAGIGWVGRSGMLILPRGGTFFFLGELLVDIDLPPDAPMPSRCGACRNCIESCPTGAISEEGMDSRLCVSYLTIEHEGEIPPELVGKLGNRFYGCDSCQLCCPWNRYAHPSEVEAFVPREALFTFDRDDLVSLDEEKYLHFFAGSPMKRAGLDGLRRNARALEQGDKKEDEQPTDEDG","513462 514472","TIGR ID: PG0472","iron-sulfur cluster-binding protein","Cytoplasm, Periplasm","Residues 17 to 315 share 45% identity with gb|AAC77123.1| (AE000489) orf, hypothetical protein in Escherichia coli K12.Residues 14 to 311 share 45% identity with gb|AAF93515.1| (AE004123) iron-sulfur cluster-binding protein in Vibrio cholerae.Residues 172 to 259 share 49% identity with gb|AAA22480.1| (M65289) ORF5; This ORF includes a region containing apotential iron-sulphur centre homologous to a region ofRhodospirillum rubrum and Chromatium vinosum; putativein Bacillus stearothermophilus.","
InterPro
IPR001450
Domain
4Fe-4S ferredoxin, iron-sulfur binding
PF00037\"[189-212]TFer4
PS00198\"[196-207]T4FE4S_FERREDOXIN
InterPro
IPR009051
Domain
Alpha-helical ferredoxin
SSF46548\"[152-258]THelical_ferredxn
InterPro
IPR013542
Domain
Domain of unknown function DUF1730
PF08331\"[70-143]TDUF1730


","BeTs to 5 clades of COG1600COG name: Uncharacterized Fe-S proteinFunctional Class: CThe phylogenetic pattern of COG1600 is a-t----ceb-----------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 146-261 are 57% similar to a (PROTEIN IRON-SULFUR CLUSTER BINDING) protein domain (PD013736) which is seen in YJES_ECOLI.Residues 49-113 are 46% similar to a (PROTEIN PSD-AMIB INTERGENIC REGION) protein domain (PD038313) which is seen in YJES_ECOLI.","","Thu Jun 14 09:24:51 MDT 2001","","Thu Jun 14 09:24:51 MDT 2001","Thu Jun 14 09:24:51 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 09:24:51 MDT 2001","Thu Jun 14 09:24:51 MDT 2001","","","Sat Feb 24 20:38:46 MST 2001","Wed Jun 20 13:55:47 MDT 2001","Thu Apr 26 17:50:50 MDT 2001","","Wed Jun 20 13:52:47 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Sat Feb 24 20:38:46 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 189 to 212 (E-value = 3.1e-05) place PG0430 in the Fer4 family which is described as 4Fe-4S binding domain (PF00037)","Wed Jun 20 13:52:47 MDT 2001","34540290","","","","","","1","","22","PG0472" "PG0433","516139","515105","1035","ATGAGCAAGATCAGCTTCAAAAACGACTATTCTGAAGGTGCGCATCCTGACATACTGCATGCGCTGACAGATACCAACTTCGTTCCACAAGAGGGATACGGCTATGACTCCTATTGCGAGGAAGCGCGTGCGATGATCCGCCGTGAATGCAATAAGCCCGATGCCGAGGTCCATTTCGTATCGGGTGGGACACAGACCAATCTCTTGGCAATCAGTCACCTGCTCCGTCCGCACGAAGCTGTCATAGCAGCACAGTCAGGGCATATCAACGTACACGAAACCGGTGCCATCGAATCCACCGGACATAAGGTTTGCACAGTACCTACTCCACTCGGCAAACTCAGTGTGGAGCATATCCGCGAAGTCCTTGCTTTTCATACGGACGAACACATGGTAAGGCCGTCCATGGTCTATATCTCCCAATCCACAGAGTTGGGCACACTCTATTCTCGTCATGAGCTGTCGGATCTGTCCACCTTTTGCCGTGCAAACGGTCTCCTACTCTACCTCGACGGTGCCCGTATCGGTTCGGCGATCATGGCAGAGACAGAGGACAATCCGACCCTGACCGATATAGCCACCCTGACCGATGCGTTCTACATCGGCGGCACCAAGAACGGAGCACTCCTTGGAGAAGCCATTGTCTTCCCTCGTCCACGTCCGGACGATGCTTTCCTCTATCAAATCAAACAGCGTGGAGCCATGTTGGCCAAAGGGCGCGTGCTGGGTATCCAGTTTGCCACGCTTTTCCGCGATGGGCTTTACTACCGGCTTGCAGCTCATGCCAACAGAATGGCAGCAGATCTGGCGACAGCTATCTCCTTCTGCGGTTATTCCTTCCTCTACCCTCCGCAAACCAACCAGATCTTCCCGATCCTCCCCAACGATCTGATCGAAAGACTGAAAACCGTATTCGACTTCTACGTGTGGCAAGCCGTATCACCCGACAGCTCAGCCATTCGTCTGGTCACTTCATGGGCTACTCCATCGGAGAATGTAGCCGCCTTTGCCGAATACCTTTCCACCTCTCACATC","6.00","-7.85","38094","MSKISFKNDYSEGAHPDILHALTDTNFVPQEGYGYDSYCEEARAMIRRECNKPDAEVHFVSGGTQTNLLAISHLLRPHEAVIAAQSGHINVHETGAIESTGHKVCTVPTPLGKLSVEHIREVLAFHTDEHMVRPSMVYISQSTELGTLYSRHELSDLSTFCRANGLLLYLDGARIGSAIMAETEDNPTLTDIATLTDAFYIGGTKNGALLGEAIVFPRPRPDDAFLYQIKQRGAMLAKGRVLGIQFATLFRDGLYYRLAAHANRMAADLATAISFCGYSFLYPPQTNQIFPILPNDLIERLKTVFDFYVWQAVSPDSSAIRLVTSWATPSENVAAFAEYLSTSHI","516139 515105 [Shorter 567 556 99]","TIGR ID: PG0474","threonine aldolase","Cytoplasm","Residues 5 to 340 share 49% identity with refNP_047071.1 L4171.5, a threonine aldolase in Leishmania major.Residues 6 to 340 share 37% identity with embCAB95974.1 (AL360034), a putative aldolase in Streptomyces coelicolor A3(2).Residues 6 to 377 share 33% identity with dbjBAA24794.1 (AB001577), a low specificity L-threonine aldolase in Pseudomonas sp..This regions shares a similar degree of identity with several additional bacterial threonine aldolases.","
InterPro
IPR001597
Domain
Aromatic amino acid beta-eliminating lyase/threonine aldolase
PF01212\"[30-218]TBeta_elim_lyase
InterPro
IPR015421
Domain
Pyridoxal phosphate-dependent transferase, major region, subdomain 1
G3DSA:3.40.640.10\"[4-253]TPyrdxlP-dep_Trfase_major_sub1
InterPro
IPR015422
Domain
Pyridoxal phosphate-dependent transferase, major region, subdomain 2
G3DSA:3.90.1150.10\"[254-340]TPyrdxlP-dep_Trfase_major_sub2
InterPro
IPR015424
Domain
Pyridoxal phosphate-dependent transferase, major region
SSF53383\"[3-340]TPyrdxlP-dep_Trfase_major
noIPR
unintegrated
unintegrated
PTHR10289\"[4-340]TPTHR10289


","BeTs to 3 clades of COG2008COG name: Threonine aldolaseFunctional Class: EThe phylogenetic pattern of COG2008 is ----y-v-e------------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 59-215 are 28% similar to a (PYRIDOXAL PHOSPHATE AMINOTRANSFERASE TRANSFERASE PROTEIN) protein domain (PD000087) which is seen in GLY1_YEAST.Residues 6-340 are 49% similar to a (PROTEIN L4171.5 LOW SPECIFICITY L-THREONINE ALDOLASE) protein domain (PD022576) which is seen in O15839_LEIMA.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Feb 27 13:41:10 MST 2001","Mon Jul 28 19:05:27 2008","Thu Apr 26 17:53:52 MDT 2001","","Tue Feb 27 13:41:10 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Jul 28 19:05:27 2008","-63% similar to PDB:1SVV Initial Stuctural Analysis of Leishmania major Threonine Aldolase (E_value = 7.3E_89);-48% similar to PDB:1V72 Crystal Structure of Phenylserine Aldolase from Pseudomonas Putida (E_value = 3.1E_31);","","","No significant hits to the Pfam 11.0 database","Thu Apr 26 17:53:52 MDT 2001","34540291","","","","","","1","","22","PG0474" "PG0434","517309","516182","1128","GTGACGGGACTATACATTCATATTCCTTTCTGTGCCACGCGCTGCTCGTATTGCGACTTCTATTCGCAGACGAACAGCGCGCTTCGTTCGGAGTATATACAGGCACTGATCGCCGAGATGAGTATTCGTCGTGCCGAAGTCACCGATACGATCGGCACTCTTTACTTCGGAGGAGGGACTCCATCGCTTCTCTCCCCACAGGAAATAGGCCGTATTATAGAGCAGGTCTACAGACTTTTCTCATTTTCTTCCGATGCCGAGATTACCTTGGAGGCCAATCCCGACGATCTGAATACAAGCTATGTACAGGAGCTTCGTACTCTGCCGATCAATCGAATAAGTATGGGAGCACAGAGTTTCCACGATGAAGACCTGCACTTCCTCAATCGTCGGCACAATGCCCGCCAAGTGCTCGAAGCAGTGGATACCTGCCGCAATGCGGGACTTACCAACCTGAGTATCGATCTTATTTACGGTCTACCCGGGCAGACGCCTGCTCGCTGGCAAGAAAATATCTCCGCAGTGCTTGCTCTCTCCCCACCCCACCTGTCCGCCTACCATCTGATATACGAAGAAGGAACCCCCCTGACACGCCTACTCCATGCAGGAAAGGTGCGCGAAGTGGACGAGGAGGTAAGCCTCGAACTCTTCCGCATGCTTCGCGAACAGCTGACAGGAGCCGGCTATGAACACTACGAGATTTCCAATTTTGCCCGTTCCGGTTATCACTCTTGCCACAACAGCTCCTATTGGCAGGATACTCCCTATCTGGGTCTTGGCCCATCGGCACACAGTTTCGATGGACGGCGTACAAGGCGATCCAATCCCTCCGATATACGCCGATACATAGTCTCCATGGCAGCAGGAAAACCTCTCTTCACGGAAGAAATCCTGACCGATAACGACCGGTACAACGAAGTAGTCATGACCCGCCTGCGTACTGCCTGTGGTTTATCGCCCGATCAGATAGGCCATCTCTTCGGAAAGGAATCTGCCGAACGGTGTATTCGGACAGCTGCTCCATTTATCCGCGACGGTCTCCTCCACGAAGAAGCCGACGGCCGAATACGGCTCACCGAAAAAGGGATATTCCTCTCGGACAGGATTATTTCCGAATTCTTTATCGTC","5.90","-8.17","42524","VTGLYIHIPFCATRCSYCDFYSQTNSALRSEYIQALIAEMSIRRAEVTDTIGTLYFGGGTPSLLSPQEIGRIIEQVYRLFSFSSDAEITLEANPDDLNTSYVQELRTLPINRISMGAQSFHDEDLHFLNRRHNARQVLEAVDTCRNAGLTNLSIDLIYGLPGQTPARWQENISAVLALSPPHLSAYHLIYEEGTPLTRLLHAGKVREVDEEVSLELFRMLREQLTGAGYEHYEISNFARSGYHSCHNSSYWQDTPYLGLGPSAHSFDGRRTRRSNPSDIRRYIVSMAAGKPLFTEEILTDNDRYNEVVMTRLRTACGLSPDQIGHLFGKESAERCIRTAAPFIRDGLLHEEADGRIRLTEKGIFLSDRIISEFFIV","517309 516182","MD Function: anaerobic transformation of coproporphryninogen-III into protoporphyrinogen-IX. Cofactor: requires magnesium, ATP and NAD (or NADP) for activity. Pathway: porphyrin biosynthesis. Subcellular location: cytoplasmic. Similarity: to other species anaerobic coproporphryninogen III oxidases. Roper et al. (2000) assign a role in cobalamin biosynthesis to this protein. See in this regard PG193 (cbiC), PG0192 (cbiET), PG0191 (cbiGF), PG0190 (cbiJD), PG1040 (cbiA), PG1038 (cbiP), PG1037 (cobD), PG1036 (cobD/cbiB), PG0631 (cobU), PG0632 (cobT), PG0633 (cobS), PG0602 (cbiK), PG0438 (cbiL), PG0112 (hemH), PG0193 (cbiH).TIGR ID: PG0475","coproporphryninogen III oxidase","Cytoplasm","Numerous significant hits to coproporphyrinogen III oxidase proteins in gapped BLAST; e.g. residues 5-376 are 34% similar to dbjBAB05062.1 coproporphyrinogen III oxidase of Bacillus halodurans, residues 3-372 are 35% similar to embCAB66237.1 putative oxygen-independent coproporphyrinogen III oxidase of Streptomyces coelicolor A3(2), residues 1-372 are 34% similar to gbAAC07371.1 oxygen-independent coproporphyrinogen III oxidase of Aquifex aeolicus.","
InterPro
IPR004559
Family
Putative oxygen-independent coproporphyrinogen III oxidase
TIGR00539\"[2-365]ThemN_rel: putative oxygen-independent copro
InterPro
IPR006638
Domain
Elongator protein 3/MiaB/NifB
SM00729\"[1-219]TElp3
InterPro
IPR007197
Domain
Radical SAM
PF04055\"[5-175]TRadical_SAM
InterPro
IPR010723
Domain
HemN, C-terminal
PF06969\"[249-364]THemN_C
InterPro
IPR013785
Domain
Aldolase-type TIM barrel
G3DSA:3.20.20.70\"[4-221]Tno description
noIPR
unintegrated
unintegrated
PTHR13932\"[3-376]TCOPROPORPHYRINIGEN III OXIDASE


","BeTs to 11 clades of COG0635COG name: Coproporphyrinogen III oxidase and related FeS oxidoreductasesFunctional Class: HThe phylogenetic pattern of COG0635 is -----QvCEBrhUJ--olINxNumber of proteins in this genome belonging to this COG is 1","***** BP02876 (OXIDASE BIOSYNTHESIS OXIDOREDUCTASE C) with a combined E-value of 2.5e-31. BP02876B 3-20 BP02876C 51-64 BP02876D 89-132 BP02876E 148-186","Residues 1-232 are 38% similar to a (PROTEIN BIOSYNTHESIS OXIDASE COPROPORPHYRINOGEN III) protein domain (PD000690) which is seen in O67418_AQUAE.Residues 233-349 are 30% similar to a (COPROPORPHYRINOGEN III OXIDASE OXYGEN-INDEPENDENT) protein domain (PD009540) which is seen in HEMN_BACSU.Residues 4-319 are 25% similar to a (OXYGEN-INDEPENDENT COPROPORPHYRINOGEN III) protein domain (PD137278) which is seen in O51600_BORBU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Tue Jul 22 13:18:35 2008","Wed Mar 22 12:49:54 MST 2000","Tue Jul 22 13:18:35 2008","Tue Mar 13 15:29:03 MST 2001","Fri Feb 23 16:26:45 MST 2001","Fri Feb 23 16:26:45 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Jul 22 13:18:35 2008","-47% similar to PDB:1OLT COPROPORPHYRINOGEN III OXIDASE (HEMN) FROM ESCHERICHIA COLI IS A RADICAL SAM ENZYME. (E_value = 1.6E_31);-50% similar to PDB:1AO7 COMPLEX BETWEEN HUMAN T-CELL RECEPTOR, VIRAL PEPTIDE (TAX), AND HLA-A 0201 (E_value = 1.6E_31);-50% similar to PDB:1QRN CRYSTAL STRUCTURE OF HUMAN A6 TCR COMPLEXED WITH HLA-A2 BOUND TO ALTERED HTLV-1 TAX PEPTIDE P6A (E_value = 1.6E_31);-50% similar to PDB:1QSE STRUCTURE OF HUMAN A6-TCR BOUND TO HLA-A2 COMPLEXED WITH ALTERED HTLV-1 TAX PEPTIDE V7R (E_value = 1.6E_31);-50% similar to PDB:1QSF STRUCTURE OF A6-TCR BOUND TO HLA-A2 COMPLEXED WITH ALTERED HTLV-1 TAX PEPTIDE Y8A (E_value = 1.6E_31);","","","Residues 5 to 175 (E-value = 2.7e-28) place PG0434 in the Radical_SAM family which is described as Radical SAM superfamily (PF04055)Residues 249 to 364 (E-value = 2.1e-23) place PG0434 in the HemN_C family which is described as HemN C-terminal region (PF06969)","Tue Jul 22 13:18:35 2008","34540292","","Roper JM, Raux E, Brindley AA, Schubert HL, Gharbia SE, Shah HN, Warren MJ. The enigma of cobalamin (Vitamin B12) biosynthesis in Porphyromonas gingivalis. Identification and characterization of a functional corrin pathway. J Biol Chem. 2000 Dec 22;275(51):40316-23. PMID: 11007789 ","","Mon Jun 4 14:05:01 MDT 2001","","1","","22","PG0475" "PG0435","518853","517309","1545","ATGAAGATTAGCGGTCTCACAGGGTGGTTCGTCAGTATTGCCGCTCTCCTCTTTGCCGGCTGTGGCACTAAAAAGGTCGCCCCGTCTCCCCCCACAGTGAAGCCTCTTCCGGACACGGTGATTGCAGCTCCTGTCATCGAACCGTGGGTCAGTCCGGTGAGAGAGGAAATGCGTGGGGTATGGCTGACCACCATATATGGACTCGACTGGCCACAACGCTCCGCTCCTACGGCCGAAGGACTGCGAAAACAGAGAGAAGAACTCTGCCGTATTCTGGACAGGCTCAAGCGTGAGAAATTCAACACTGTATTCTTTCAGGTGCGTCATCGCGGAGATGTCATTTACCCCTCTGAGATAGAACCCCAATCGACCATATTCACCGGGACAGGCAAGCCGGACTACGACCCGCTGGAGTTTGCCCTAAAAGAGTGCCACAAGCGAGGTCTGACTTTCCATGCGTGGCTCATTGTCACCCCCTTAGGACCGGATAAACACATACGTTCGCTGAAAGGCGAATCGGTCAAAAGCCGTCATCCCGAATGGTGTGTACGGCACAATAATCTATGGTACCTCAATCCGGGCGTACCCGAAGCAAGAGCCTACTTCGCATCCCTCGTTCGTGAGATCGTAGAGAAATACCCCGTCGATGGCATTCACCTCGACTACATGCGCTATCCGGAAAAAGCCAAAATCTTCGATGATGCTGCCACCTATAAACAGTATGGAGGCAATATGGATCCGGCAGCATGGCGGCGGCGAAACCTGTCCGACCTCATGGCGGACGTTCACCGAGCCGCTACGGAAAAGACTCCGTGGGTACAGGTAAGCGTAGCTACCATCGGCCGTCTGAGAAAGCTCGCCGGCAAACGTGGCGGTGACTGGACAGCCTACGAAGGGGTACACCAGGATCCCGTTGTCTGGGCACAAGAAGGAAGTGTGGACTTTCTGGTACCGATGCTCTACTACCGTGACGACCTATTTTATCCTTTCCTTGAAGATTGGAAAGCGCAGCTACCCGACCTGCCGATTATCCCGGGATTAGCCACCTATCGGGTCGTAGACAACAGTCAGTGGCCGGCTCAAGTCATCGGAGAGCAAATCGACTCCGCCCGTCACATAGGATTCGCCGGCGTCTGCCTCTTCCGAGAAGATCAGTTGCGCCACGAAAGCAATGGCATACCGCAGATCATTCGCGAACGATTTGCCGAAGACGTGGTACCCATCCCCATACATCGCAAGGGTTTTGCCGCTCCCATAAAAGCAGAAATTCCTCGGCTGACACGCCGGACAGATGGCAAAATCGCTGTGAGTTGGGACAAAGCTGCCGGAGAAACAGCTGTAGTATACTACCGCCTCTTCCTCAGAAGATTCGACACCTCCGGCCGGATGCAGGACAGGCTGGTGGCTGACCGCATCGAAGACAACTCCTACCTGCTGCCCAAGGAGCTAACAGTGGGAGCCACGCGGATAGAAGTACGTCTCCAAGCCATCAACAAAATGAATGTGGCCGGCCCCGTATCCGCTCCCTCAAGCATGGAGATCAAG","9.60","10.69","58542","MKISGLTGWFVSIAALLFAGCGTKKVAPSPPTVKPLPDTVIAAPVIEPWVSPVREEMRGVWLTTIYGLDWPQRSAPTAEGLRKQREELCRILDRLKREKFNTVFFQVRHRGDVIYPSEIEPQSTIFTGTGKPDYDPLEFALKECHKRGLTFHAWLIVTPLGPDKHIRSLKGESVKSRHPEWCVRHNNLWYLNPGVPEARAYFASLVREIVEKYPVDGIHLDYMRYPEKAKIFDDAATYKQYGGNMDPAAWRRRNLSDLMADVHRAATEKTPWVQVSVATIGRLRKLAGKRGGDWTAYEGVHQDPVVWAQEGSVDFLVPMLYYRDDLFYPFLEDWKAQLPDLPIIPGLATYRVVDNSQWPAQVIGEQIDSARHIGFAGVCLFREDQLRHESNGIPQIIRERFAEDVVPIPIHRKGFAAPIKAEIPRLTRRTDGKIAVSWDKAAGETAVVYYRLFLRRFDTSGRMQDRLVADRIEDNSYLLPKELTVGATRIEVRLQAINKMNVAGPVSAPSSMEIK","518853 517309","TIGR ID: PG0476","yngK-related conserved hypothetical protein","Cytoplasm, Outer membrane","A few hits in gapped BLAST to conserved hypothetical proteins, e.g. residues 15-386 are 45% similar to b1491 of Escherichia coli (AE000246). Residues 56-359 are 49% similar to the yngK protein of B.subtilis (Y13917).","
InterPro
IPR003790
Family
Protein of unknown function DUF187
PF02638\"[2-398]TDUF187
InterPro
IPR003961
Domain
Fibronectin, type III
SM00060\"[418-504]TFN3
PS50853\"[418-512]TFN3
InterPro
IPR008957
Domain
Fibronectin, type III-like fold
SSF49265\"[418-513]TFN_III-like
noIPR
unintegrated
unintegrated
PS51257\"[1-21]TPROKAR_LIPOPROTEIN
SSF51445\"[161-335]TSSF51445


","BeTs to 3 clades of COG1649COG name: Uncharacterized BCRFunctional Class: SThe phylogenetic pattern of COG1649 is -------Ceb-----------Number of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","Residues 137-321 are 29% similar to a (PROTEIN OF SECTION YNGK) protein domain (PD024118) which is seen in O35015_BACSU.Residues 55-136 are 42% similar to a (PROTEIN OF SECTION YNGK FROM BASES THE COMPLETE GENOME) protein domain (PD042721) which is seen in P76130_ECOLI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Jan 10 13:21:49 MST 2001","Wed Jan 10 13:21:49 MST 2001","Mon Apr 2 13:58:09 MDT 2001","","Mon Apr 2 13:58:09 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 15-322 are 30% similar to PG0052, a YngK-related conserved hypothetical protein.","Mon Apr 2 13:58:09 MDT 2001","Mon Apr 2 13:58:09 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 2 to 398 (E-value = 1.6e-18) place PG0435 in the DUF187 family which is described as Uncharacterized BCR, COG1649 (PF02638)","Mon Apr 2 13:58:09 MDT 2001","34540293","","","","","","1","","22","PG0476" "PG0436","519688","518846","843","ATGGAAATATTCAACACCGTCGCTTCACTCAAGAACTTTGTGGCACATGCTCGTGCCGAAGGGAAAACCATCGGCCTCGTCCCCACGATGGGAGCTTTGCACCGAGGACACATCAGTCTGATCCACCGTGCCGTAGCCGAATGCGACATTTGCGTGGCAAGCGTATTTGTCAATCCTACACAATTCAACGACAAACGCGATCTGGAATGTTATCCCCGCACACCGGAAGCCGATGCAGCAGTCTTGGCGGAAGCCGCTTGTCATGCCGTATTCATGCCCTCCGTAGAAGAGGTATATCCCGAACCGGACACTCGCGTATTCGATCTGGGCAGTGTGGCGGAAGTGATGGAAGGCAAGCATCGCCCCGGACACTTCAATGGCGTGGCGCAGGTGGTAAGCAAACTCTTCATGATGGTGGAGCCGGACAAGGCATATTTCGGAGAAAAGGATTTCCAGCAAATCGCCGTTATCCGCAGCATGGTGAACCTGCTTGGCTTACCCGTTACGATCGTGGCCTGTCCTATCATCCGTGAAGAGGACGGGCTTGCACTCAGTAGCCGCAACGTCCGCCTCGGCACCGAAGAGCGTGCCATAGCCCCATCCATCGCTCGCATCCTCGGACAAAGCCGCACACTCCGTCCGGCACATACACCCGAAGCTGTTACGCGATGGGTGACGGAAAGCCTTAATGCCCTGCCTCATCTGCAAGTGGAGTACTTCGAAATAGTAGACGGGAATTCCTTACAAAAGATCGACAACTGGCAAGACACCGACCATGCCGTAGGTTGTATTACGGTATATTGCGGAGAGGTTCGCCTGATCGATAACATCAAATATGAAGAT","5.30","-9.91","31066","MEIFNTVASLKNFVAHARAEGKTIGLVPTMGALHRGHISLIHRAVAECDICVASVFVNPTQFNDKRDLECYPRTPEADAAVLAEAACHAVFMPSVEEVYPEPDTRVFDLGSVAEVMEGKHRPGHFNGVAQVVSKLFMMVEPDKAYFGEKDFQQIAVIRSMVNLLGLPVTIVACPIIREEDGLALSSRNVRLGTEERAIAPSIARILGQSRTLRPAHTPEAVTRWVTESLNALPHLQVEYFEIVDGNSLQKIDNWQDTDHAVGCITVYCGEVRLIDNIKYED","519688 518846","TIGR ID: PG0477","pantoate-beta-alanine ligase/cytidylate kinase","Cytoplasm","Residues 3 to 280 share 43% identity with gb|AAC07847.1| (AE000774), pantothenate synthetase in Aquifex aeolicus.Residues 1 to 276 share 41% identity with gb|AAD36154.1|AE001768_3 (AE001768) pantoate-beta-alanine ligase in Thermotoga maritima.Residues 1 to 277 share 42% identity with dbj|BAA18165.1| (D90912) pantothenate synthetase in Synechocystis sp..This region shares identity with a number of other bacterial pantoate-beta-alanine ligases.","
InterPro
IPR003721
Family
Pantoate-beta-alanine ligase
PTHR21299:SF1\"[3-280]TPantoate_ligase
PF02569\"[1-279]TPantoate_ligase
TIGR00018\"[1-280]TpanC
InterPro
IPR014729
Domain
Rossmann-like alpha/beta/alpha sandwich fold
G3DSA:3.40.50.620\"[1-174]TRossmann-like_a/b/a_fold
noIPR
unintegrated
unintegrated
G3DSA:3.30.1300.10\"[178-277]TG3DSA:3.30.1300.10
PTHR21299\"[3-280]TPTHR21299
SSF52374\"[1-279]TSSF52374


","BeTs to 8 clades of COG0414COG name: Pantoate-beta-alanine ligaseFunctional Class: HThe phylogenetic pattern of COG0414 is ----yqvcebr-uj-------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 10-196 are 51% similar to a (LIGASE PANTOTHENATE SYNTHETASE) protein domain (PD006306) which is seen in O67891_AQUAE.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Sat Feb 24 20:34:31 MST 2001","Sat Feb 24 20:34:31 MST 2001","Fri Mar 9 15:57:43 MST 2001","","Sat Feb 24 20:34:31 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Sat Feb 24 20:34:31 MST 2001","-57% similar to PDB:1UFV Crystal Structure Of Pantothenate Synthetase From Thermus Thermophilus HB8 (E_value = 9.2E_52);-57% similar to PDB:1V8F Crystal Structure of Pantoate-beta-Alanine (Pantothenate Synthetase) from Thermus Thermophilus HB8 (E_value = 2.7E_51);-57% similar to PDB:1IHO CRYSTAL APO-STRUCTURE OF PANTOTHENATE SYNTHETASE FROM E. COLI (E_value = 8.6E_50);-53% similar to PDB:1MOP Crystal Structure of a Pantothenate Synthetase from M. tuberculosis (E_value = 1.5E_38);-53% similar to PDB:1N2B Crystal Structure of a Pantothenate Synthetase from M. tuberculosis in complex with AMPCPP and pantoate, higher occupancy of pantoate and lower occupancy of AMPCPP in subunit A (E_value = 1.5E_38);","","","Residues 1 to 279 (E-value = 4e-93) place PG0436 in the Pantoate_ligase family which is described as Pantoate-beta-alanine ligase (PF02569)","Fri Mar 9 15:57:43 MST 2001","34540294","","","","","","1","","22","PG0477" "PG0437","519827","520603","777","ATGCCCTCAAAAATCAATTCGATGAAAAAAGTATTATCTCTCTTAATGGTATTGGGTGCTATCATGTTTTACTGCCATGATGCCCAGTCGCAAATAAGTATTCGTGCTTTTGAGTTCAACGCCAACTTCAATCATTCGCCGGCCGGCACCGGTGCCGGCAGTGATCTGCTCGGTACGGATCTGAATCTGCGGATGCAACTGCATCATGCCGAACTACCCGATGCCTTGGATTTCTATGTCGGCATCCAGCGGAGAGAGAGCTTTTGGCAGAATGGAAATGGGCCGATCATCTATGTGAATCATCCCGATGGGACAAAAGAGAAATTGAACTTCGGCACTGCTGAAGGCCCGTTTCAAAGCGATGCATACAGCAAGTTGCTGATTTGCTTCGGCCCGGCATATACCCTGTCTATAGGCAAGCGTTTCGGTTGGACCAATGAGCTGATGTTCCTCTTTGCTCCTATACCTTGGAGTCGGCTTCCCTATCATTCGATCGGATACAGGGCTTCGGGTAGATCATATGCGAGGAAAGAGCACAAGCCATTCAGATACAATGGCTTTTCACCCGGTATAGGGATCAATAGCTGTCTCTGGTGGAAAGTCTCTGTCAGAGACGAATACATCTTCCGTATCGGTCTGAACGTTGGGTATGAATATATGGATCAGCTCTACGCATACCGCCACTTCAAAGTAAATGAAGAAAAACCTCTTTCCTCCCTCTCCCAAAGGCTGAAGCACATCGGCCACATCGGTCTGAACTTTGCCCTCAGTCTGAAC","10.00","9.26","29487","MPSKINSMKKVLSLLMVLGAIMFYCHDAQSQISIRAFEFNANFNHSPAGTGAGSDLLGTDLNLRMQLHHAELPDALDFYVGIQRRESFWQNGNGPIIYVNHPDGTKEKLNFGTAEGPFQSDAYSKLLICFGPAYTLSIGKRFGWTNELMFLFAPIPWSRLPYHSIGYRASGRSYARKEHKPFRYNGFSPGIGINSCLWWKVSVRDEYIFRIGLNVGYEYMDQLYAYRHFKVNEEKPLSSLSQRLKHIGHIGLNFALSLN","519827 520603","TIGR ID: PG0479","hypothetical protein","Outer membrane, Inner membrane, Cytoplasm","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-30]?signal-peptide
tmhmm\"[10-28]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Apr 5 18:34:50 MDT 2001","","Tue Feb 20 15:27:09 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 4 to 258 are 40% similar to PG1848, another hypothetical.","Thu Apr 5 18:34:50 MDT 2001","Tue Feb 20 15:27:09 MST 2001","-52% similar to PDB:1US2 XYLANASE10C (MUTANT E385A) FROM CELLVIBRIO JAPONICUS IN COMPLEX WITH XYLOPENTAOSE (E_value = );-52% similar to PDB:1US3 NATIVE XYLANASE10C FROM CELLVIBRIO JAPONICUS (E_value = );","","","No significant hits to the Pfam 11.0 database","Thu Apr 5 18:34:50 MDT 2001","34540295","","","","","","1","","22","PG0479" "PG0438","521410","520700","711","ATGGAACGCTATCCTGTCCGATTCGTATCGCTCGGTCCGGGCGGTCCTGATCTGATAACGCTCGCTGCATACAAAGCTCTGCAGAAGTGCGACCTCATCTACTACCCTACCACCATCTCACCATCCGGCAAGACTTTATCCAGAGCCGAGGACATCATGCTGACACATGGCATAAACACAGCTAAATTCCGCCCCTATACTCTTCCGATGAGAAAGGACAGGACGAAGGCATTAGAGGTATATGAGGAAGTGGCCTCTCGTTGCAAAGCAGATTACCGTGCAGGCCTGTCTGTCGTGGTAGCAGCCGAAGGAGATGCTGGTTTTTATTCCTCTACGCATTATATTTCCGATATACTTCTTGGACAAGAGTGTCCTTTTATCTACATCGCAGGAGTACCGGCTTTCATAGCTGCAGGTGCCGTTGGCGGACTGAGCATAACACGACAGGACGAAGAGCTACAAATAATACCCGGAAATGCAACGACAAAAAAACTGCAAGAGGCTATGGCTCAGGAACGCACAGTCCTGATCATGAAACTATCGAGATGCGAGAGCATCGTCAAAGAGTTCTTGACCAAGGAAGATGTAGCTGCCATGTATTTCGAGCATGTAGGAACTGCCGATGAATTTATCACCTCCCGTATCATAGAAGATATAATGCCCCGACGTTTCCCTTATTTCTCCATGTTGTGGCTCAAACCAAAGCGACAA","7.80","1.54","26508","MERYPVRFVSLGPGGPDLITLAAYKALQKCDLIYYPTTISPSGKTLSRAEDIMLTHGINTAKFRPYTLPMRKDRTKALEVYEEVASRCKADYRAGLSVVVAAEGDAGFYSSTHYISDILLGQECPFIYIAGVPAFIAAGAVGGLSITRQDEELQIIPGNATTKKLQEAMAQERTVLIMKLSRCESIVKEFLTKEDVAAMYFEHVGTADEFITSRIIEDIMPRRFPYFSMLWLKPKRQ","521410 520700","MD methylates precorrin-2 at the C-20 position to produce precorrin-3A. Catalytic activity: S-adenosyl-L-methionine + precorrin-2 = S-adenosyl-L-homocysteine + precorrin-3A. Pathway: cobalamin biosynthesis. Subunit: homodimer. Similarity: belongs to a family that groups SUMT, CYSG, CBIF/COBM and CBIL/COBI.Roper et al. (2000) assign a role in cobalamin biosynthesis to this protein, hence the gene is denoted cbiL. See in this regard PG193 (cbiC), PG0192 (cbiET), PG0191 (cbiGF), PG0190 (cbiJD), PG1040 (cbiA), PG1038 (cbiP), PG1037 (cobD), PG1036 (cobD/cbiB), PG0631 (cobU), PG0632 (cobT), PG0633 (cobS), PG0434 (hemN/F), PG0602 (cbiK), PG0112 (hemH), PG0193 (cbiH).TIGR ID: PG0480","precorrin-2 methyltransferase","Cytoplasm","Residues 9 to 233 share 28% identity with dbjBAA17689.1 (D90908), an S-adenosyl-methionine: precorrin-2 methyltransferase in Synechocystis sp.Residues 9 to 233 share 26% identity with embCAC11796.1 (AL445065), a precorrin-2 methyltransferase related proteinin Thermoplasma acidophilum.Residues 9 to 182 share 28% identity with gbAAA25797.1 (M59301) ORF 4, a precorrin-2 methyltransferase in Pseudomonas denitrificans.This region also shares a similar degree of identity with additional bacterial precorrin-2 methyltransferases.","
InterPro
IPR000878
Domain
Tetrapyrrole methylase
PF00590\"[5-220]TTP_methylase
SSF53790\"[5-234]TCor/por_Metransf
InterPro
IPR012382
Family
Cobalamin (vitamin B12) biosynthesis CobI/CbiL, precorrin-2 C20-methyltransferase
PIRSF036427\"[5-237]TPrecrrn-2_mtase
InterPro
IPR014777
Domain
Tetrapyrrole methylase, subdomain 1
G3DSA:3.40.1010.10\"[6-132]T4pyrrole_Mease_sub1


","BeTs to 4 clades of COG2243COG name: Precorrin-2 methylase CobI/CbiLFunctional Class: HThe phylogenetic pattern of COG2243 is -mt----c--r----------Number of proteins in this genome belonging to this COG is 1","***** IPB000878 (Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase) with a combined E-value of 4.5e-19. IPB000878A 6-35 IPB000878B 104-147","Residues 9-233 are 29% similar to a (METHYLTRANSFERASE PRECORRIN-2 TRANSFERASE) protein domain (PD106667) which is seen in P73644_SYNY3.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Wed Jul 23 14:02:53 2008","Tue Feb 27 13:46:39 MST 2001","Wed Jul 23 14:02:53 2008","Fri Mar 9 15:39:31 MST 2001","Tue Feb 27 13:46:39 MST 2001","Tue Feb 27 13:46:39 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Jul 23 14:02:53 2008","-51% similar to PDB:2E0K Crystal structure of CbiL, a methyltransferase involved in anaerobic vitamin B12 biosynthesis (E_value = 4.1E_31);-51% similar to PDB:2E0N Crystal structure of CbiL in complex with S-adenosylhomocysteine, a methyltransferase involved in anaerobic vitamin B12 biosynthesis (E_value = 4.1E_31);","","","Residues 5 to 220 (E-value = 5.2e-07) place PG0438 in the TP_methylase family which is described as Tetrapyrrole (Corrin/Porphyrin) Methylases (PF00590)","Fri Mar 9 15:39:31 MST 2001","34540296","","Roper JM, Raux E, Brindley AA, Schubert HL, Gharbia SE, Shah HN, Warren MJ. The enigma of cobalamin (Vitamin B12) biosynthesis in Porphyromonas gingivalis. Identification and characterization of a functional corrin pathway. J Biol Chem. 2000 Dec 22;275(51):40316-23. PMID: 11007789","","Mon Jun 4 14:06:45 MDT 2001","","1","","22","PG0480" "PG0439","522713","521526","1188","ATGTACAAAGGAATGAAAGACTACTTGGCTGCCGAACTCAAGAGTATCGAAGAAGCCGGGCTGTACAAGAAAGAACGGATCATCATCACCCCCCAGCGTGCTGACATCCGCGTAAACGAAGGCCAAGAGGTATTGAACTTTTGTGCCAACAACTATCTCGGTCTGTCCGATCACCCTCGGCTGATACAGGCTGCCAAGGATGCGATGGATGAGCGTGGATTCGGGATGAGCTCCGTACGCTTCATTTGCGGAACGCAAGACATCCACAAAGAATTGGAGAAAGCCATTGCCGAATACTTCCACACCGAAGATACTATCCTCTATGCGGCATGCTTCGATGCCAACGGCGGTGTATTCGAACCGCTCTTTGGAGAAGAAGACGCCATCATCAGCGATGCTCTGAACCATGCCTCCATCATCGACGGCGTTCGACTCTGCAAAGCCAAACGTTATCGCTACGAGAATGCCAACATGGAAGACCTCGAGCGCGTCCTGAAAGAAGCACAGGCCCAACGCTATCGCATCATCGTAACGGATGGCGTATTCTCTATGGATGGCAATGTGGCTCCCATGGATAAGATATGCGATTTGGCAGAGAAATACGATGCCATGGTGATGGTGGACGAGTGCCACTCTGCCGGCGTGGTGGGTGCTACCGGACGTGGCGTGGCAGAACAGTTCGACTGCTACGGACGTATCGACATCCATACCGGAACTCTGGGCAAGGCTTTCGGTGGTGCCATCGGTGGCTTTACGACCGGGCCGAAAGAAGTGATTGCCATGCTGCGTCAGCGTTCACGTCCCTACCTCTTCAGCAACTCTATTCCTCCCAGTGTGGTAGGTGCCGGTCTTGAAGTCTTCAAGATGCTGAAGGAGAGCAATGACCTCCACACCAAGCTGATGGAGAACGTGAACTACTTCCGCGACAGAATGCTGGCAGCCGGTTTCGACATCAAGCCGACCCAAAGTGCCATCTGTGCAGTCATGCTGTACGACGCCAAACTGTCTCAGGACTATGCAGCTCGTTTGCTTGAAGAGGGTATCTACGTTACGGGATTCTACTATCCTGTCGTTCCCAAAGGACAGGCTCGCATCCGAGTACAGCTATCCGCCGGACACGAACGCGAACATCTGGACAAGGCTATCAATGCTTTCATCAAGGTCGGTCGCGAATTGGGCGTTATCAAA","5.90","-6.18","44051","MYKGMKDYLAAELKSIEEAGLYKKERIIITPQRADIRVNEGQEVLNFCANNYLGLSDHPRLIQAAKDAMDERGFGMSSVRFICGTQDIHKELEKAIAEYFHTEDTILYAACFDANGGVFEPLFGEEDAIISDALNHASIIDGVRLCKAKRYRYENANMEDLERVLKEAQAQRYRIIVTDGVFSMDGNVAPMDKICDLAEKYDAMVMVDECHSAGVVGATGRGVAEQFDCYGRIDIHTGTLGKAFGGAIGGFTTGPKEVIAMLRQRSRPYLFSNSIPPSVVGAGLEVFKMLKESNDLHTKLMENVNYFRDRMLAAGFDIKPTQSAICAVMLYDAKLSQDYAARLLEEGIYVTGFYYPVVPKGQARIRVQLSAGHEREHLDKAINAFIKVGRELGVIK","522713 521526","TIGR ID: PG0481","2-amino-3-ketobutyrate coenzyme A ligase","Cytoplasm","Numerous significant hits to 2-amino-3-ketobutyrate coenzyme A ligase in gapped BLAST; e.g. residues 9-395 are 56% similar to gb|AAF96784.1| 2-amino-3-ketobutyrate coenzyme A ligase of Vibriocholerae, residues 9-395 are 54% similar to gb|AAG58764.1|AE005589_4 2-amino-3-ketobutyrate CoA ligase (glycine acetyltransferase) of Escherichia coli O157:H7, residues 1-392 are 52% similar to emb|CAB71247.1| 2-amino-3-ketobutyrate coenzyme A ligase of Streptomyces coelicolor A3(2).This sequence is similar to BT1371. ","
InterPro
IPR004839
Domain
Aminotransferase, class I and II
PF00155\"[42-385]TAminotran_1_2
InterPro
IPR011282
Family
2-amino-3-ketobutyrate coenzyme A ligase
PTHR13693:SF14\"[5-394]T2am3keto_CoA
TIGR01822\"[5-395]T2am3keto_CoA
InterPro
IPR015421
Domain
Pyridoxal phosphate-dependent transferase, major region, subdomain 1
G3DSA:3.40.640.10\"[58-293]TPyrdxlP-dep_Trfase_major_sub1
InterPro
IPR015424
Domain
Pyridoxal phosphate-dependent transferase, major region
SSF53383\"[1-396]TPyrdxlP-dep_Trfase_major
noIPR
unintegrated
unintegrated
PTHR13693\"[5-394]TPTHR13693


","BeTs to 11 clades of COG0156COG name: Biotin biosynthesis protein BioF and related aminotransferasesFunctional Class: HThe phylogenetic pattern of COG0156 is -m-kYq-cEBRhuj----iNxNumber of proteins in this genome belonging to this COG is 3","***** IPB001917 (Aminotransferases class-II) with a combined E-value of 2.5e-22. IPB001917A 73-84 IPB001917B 131-140 IPB001917C 203-217 IPB001917D 353-366","Residues 325-394 are 58% similar to a (SYNTHASE TRANSFERASE ACID BIOSYNTHESIS SYNTHETASE) protein domain (PD001038) which is seen in KBL_ECOLI.Residues 9-84 are 50% similar to a (TRANSFERASE LIGASE SYNTHASE) protein domain (PD001058) which is seen in Q22768_CAEEL.Residues 75-263 are 56% similar to a (PYRIDOXAL PHOSPHATE AMINOTRANSFERASE TRANSFERASE PROTEIN) protein domain (PD000087) which is seen in KBL_ECOLI.Residues 85-119 are 74% similar to a (T25B9.1 PROTEIN) protein domain (PD168671) which is seen in Q22768_CAEEL.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Feb 14 13:23:05 MST 2001","Thu Dec 4 15:15:56 2003","Wed Feb 14 13:23:05 MST 2001","Thu Apr 26 18:27:51 MDT 2001","Wed Feb 14 13:23:05 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1-395 are 37% similar to PG1556, a predicted 8-amino-7-oxononanoate synthase. Similarities are also seen to PG1061, a predicted 8-amino-7-oxononanoate synthase.","Wed Feb 14 13:23:05 MST 2001","Wed Feb 14 13:23:05 MST 2001","-70% similar to PDB:1FC4 2-AMINO-3-KETOBUTYRATE COA LIGASE (E_value = 2.0E_117);-50% similar to PDB:1DJ9 CRYSTAL STRUCTURE OF 8-AMINO-7-OXONANOATE SYNTHASE (OR 7-KETO-8AMINIPELARGONATE OR KAPA SYNTHASE) COMPLEXED WITH PLP AND THE PRODUCT 8(S)-AMINO-7-OXONANONOATE (OR KAPA). THE ENZYME OF BIOTIN BIOSYNTHETIC PATHWAY. (E_value = 9.5E_35);-50% similar to PDB:1DJE CRYSTAL STRUCTURE OF THE PLP-BOUND FORM OF 8-AMINO-7-OXONANOATE SYNTHASE (E_value = 9.5E_35);-50% similar to PDB:1BS0 PLP-DEPENDENT ACYL-COA SYNTHASE (E_value = 2.8E_34);-50% similar to PDB:2G6W Suicide inhibition of a-Oxamine Synthase: Structures of the Covalent Adducts of 8-Amino-7-oxonanoate Synthase with trifluoroalanine (E_value = 2.8E_34);","","","Residues 74 to 386 (E-value = 8.2e-51) place PG0439 in the Aminotran_1_2 family which is described as Aminotransferase class I and II (PF00155)","Thu Apr 26 18:27:51 MDT 2001","34540297","","","","","","1","","22","PG0481" "PG0440","523220","522792","429","ATGTTGCAACCCATCCTTTCCATATCCGGCAAATCCGGATTGTTTCGGCTCGTATCGCGCGGAAAGAATACGCTCATAGTCGAAGCCCTCGACACGAAACGTAGAACCCCCACATACCCATCGGACCGAGTAGTCTCCCTTGGCGATATTTCCATTTACACCATCGAAGATGATGTCCCTCTGCCGGAGGTTATGGAAACGATATACCGGAAGAACGAAGGCAAACAGCTCGATGCTCCTGCTCTCACGAAGGACAACGACTCACTACGTGCTTTCTTCGGGGAGGTACTGCCCGAATACGACGTCGATAGAGTATATCCGAGCGATATACGCAAGATTATCTCTTGGTACAATCTTCTGGTGGACAACGGATTTACCACTTTCCTCTCGGATAAGAAACCGGCGGAAGAAGAGACGACGGAAAAAGAA","4.60","-6.00","16244","MLQPILSISGKSGLFRLVSRGKNTLIVEALDTKRRTPTYPSDRVVSLGDISIYTIEDDVPLPEVMETIYRKNEGKQLDAPALTKDNDSLRAFFGEVLPEYDVDRVYPSDIRKIISWYNLLVDNGFTTFLSDKKPAEEETTEKE","523220 522792","TIGR ID: PG0482","conserved hypothetical protein","Cytoplasm","Its nearest neighbor in the NR database is gi:53712495 from Bacteroides fragilis YCH46.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Sep 10 16:00:39 2004","Thu Mar 3 10:01:59 2005","Tue Feb 20 13:19:58 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 20 13:19:58 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Feb 20 13:19:58 MST 2001","34540298","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Thu Mar 3 10:01:59 2005","","1","","22","PG0482" "PG0441","523935","523330","606","ATGATTACCATTGGGATCACCGGCGGAATAGGAAGCGGAAAGTCTGTTGTCAGTCGTATCCTGCTTACCCTCGGTATCCCCGTATACGACTCTGACAGCAGAGCCAAATGGCTCAATGATCACAGCCCTGTCGTCCGACAGGCACTGACGGGCCTCATAGGCAGCGATCTGTACGAGAACGGCATACTCAGGCGAGACAGGCTGGCTGCGGCTATCTTCTCCTCCGGCGATCTCCTCGAACAGGTAAACGGGATCATACATCCGGAAGTCAAAAAAGACTTCTGCCAATGGCGTTCGGAGTGCGAATCGGATCTCTGCGCCATCGAGAGTGCCATTCTTTTCAGCTCGGGATTCAACTCCCTGTGCGATACGGTAATTCGGGTCGATGCCCCCGAAAAGATAAGACAAGAGCGGGCGATGGCTCGCGACGGCTCATCGGCAGAAACCATGAGGCAGCGTATGCTCAGCCAAGAAAGAGAGCAGTCATTGGCCAAGGCCGGAGCAGACCATACGGTGCTCAACGCCCCACCCCATCTACTTGTCCCTCAAGTCGTCAGAATTATAGAGACAGTACGAACAAAGAGACCCAATCCGCCCGATCGACTT","7.40","0.77","22215","MITIGITGGIGSGKSVVSRILLTLGIPVYDSDSRAKWLNDHSPVVRQALTGLIGSDLYENGILRRDRLAAAIFSSGDLLEQVNGIIHPEVKKDFCQWRSECESDLCAIESAILFSSGFNSLCDTVIRVDAPEKIRQERAMARDGSSAETMRQRMLSQEREQSLAKAGADHTVLNAPPHLLVPQVVRIIETVRTKRPNPPDRL","","TIGR ID: PG0483","conserved hypothetical protein","Cytoplasm","Numerous weak hits using gapped BLAST to hypothetical and conserved hypotheticals including: residues 12-71 are 30% similar to gbAAF11446.1AE002028_8 in Deinococcus radiodurans, residues 12-166 are 30% similar to gbAAC00353.1 (AF008220) YtaG in B. subtilis, and residues 12-179 are 27% similar to gbAAG07917.1AE004867 in P.aeruginosa.This sequence is also orthologous to CT492.","
InterPro
IPR001977
Family
Dephospho-CoA kinase
PD003329\"[12-94]TDepp_CoAkinase
PF01121\"[2-177]TCoaE
TIGR00152\"[3-186]TDepp_CoAkinase
PS51219\"[3-202]TDPCK
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[2-200]TG3DSA:3.40.50.300
SSF52540\"[1-202]TSSF52540


","BeTs to 11 clades of COG0237COG name: Predicted ATPaseFunctional Class: RThe phylogenetic pattern of COG0237 is ----yqvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB001977 (Uncharacterized protein family UPF0038) with a combined E-value of 4.6e-24. IPB001977A 4-18 IPB001977C 52-89 IPB001977E 135-175","Residues 12-166 are 30% similar to a (PROTEIN ATP-BINDING 3'REGION CONSERVED) protein domain (PD003329) which is seen in YTAG_BACSU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","Wed Apr 4 17:15:23 MDT 2001","","Wed Apr 4 17:20:12 MDT 2001","Thu Jul 24 13:30:46 2008","Wed Apr 4 17:15:23 MDT 2001","Wed Apr 4 17:15:23 MDT 2001","Thu Jul 24 13:30:46 2008","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Jul 24 13:30:46 2008","-49% similar to PDB:1UF9 Crystal structure of TT1252 from Thermus thermophilus (E_value = 7.4E_12);-48% similar to PDB:1JJV DEPHOSPHO-COA KINASE IN COMPLEX WITH ATP (E_value = 7.0E_10);","","","Residues 2 to 177 (E-value = 1.4e-17) place PG0441 in the CoaE family which is described as Dephospho-CoA kinase (PF01121)","Wed Apr 4 17:15:23 MDT 2001","34540299","","","","","","1","","22","PG0483" "PG0442","524949","523945","1005","ATGAAGCTCAATCTCCTCAATGCCGATCGGAAAAAGGGGAAAAGTATAGACAAGGCATCCGCTCCCCGTTCACGCCGTGGGAGGAACGTCCTTGTCTTTTTCGCTTTTGTGGTTCTCTCTGCCGTTTTTTGGTTTATGCAGAGTCTGCAGGATGTTTACACCACTTCATTTTCGATTCCCATCTCCTATTCCGAGCTGCCGCCGGACATAGGAGTCTCAGGCAGGCTGCCCGACCGCTTGGACATTATGCTGAAAGATCAGGGTATCGTGCTTCTGACCTATAAGCTGAAGGGGTTCTCTCCGATCAATATCTCCCCATCCAAAGCGCAATTGCACAAGAAAAAGAGCATGCGACTGAACAAATGGGATCTGGTCGAACTGCTCCAAAAACAACTGGAGACCTCCACGACCGTTGCAGCCATCTCGCCCGAAGACATCAAAGCGACATTCTACACTCGCAAAAAGAAAACCGTACCCGTAGTCATAAACGGACAAACCGTCCCCAAAGAAGGATTCTACGCCTTCGATCCCATCTTCTCGCCGAGCGAAGTGACCATATATGGAAGTGCAGAAGCGTTGGCGAGTATCGGGTCCGTGAATACGGAAGAGTTTTCTATCGACGGATTGGAGAGCGATTTCTCCGGTGACATAGCGATTGCCCCGATCGATGATATCGTTATCGATCCGACAAATATCAGAATGCAAGTGCGTGTAGAGCAACTAACGGAACAAACGTTCGAACTGCCGATCATAACGAAGAATGTGCCTGAAGGCTTCCTCCTTCGTCCTCTACCCGGCAAAGTGTCGATACAGCTCACACTCCCCACATCGCACTACAAAGAAGTATCGGAAGCTGATTTGCAAACAGCCGTTTTCTATCCGTCCTCTCCGGATTCGCTCCGTAGCGATTCTTCTTTGCCGGTAGAGTTGATCATGAAACCGGATTGGCTCAAGCACTATAAGATTACCCCTTCGCACGTCCAATTCATCATCGAACGCATTCAG","8.80","1.98","37522","MKLNLLNADRKKGKSIDKASAPRSRRGRNVLVFFAFVVLSAVFWFMQSLQDVYTTSFSIPISYSELPPDIGVSGRLPDRLDIMLKDQGIVLLTYKLKGFSPINISPSKAQLHKKKSMRLNKWDLVELLQKQLETSTTVAAISPEDIKATFYTRKKKTVPVVINGQTVPKEGFYAFDPIFSPSEVTIYGSAEALASIGSVNTEEFSIDGLESDFSGDIAIAPIDDIVIDPTNIRMQVRVEQLTEQTFELPIITKNVPEGFLLRPLPGKVSIQLTLPTSHYKEVSEADLQTAVFYPSSPDSLRSDSSLPVELIMKPDWLKHYKITPSHVQFIIERIQ","524949 523945","TIGR ID: PG0484","hypothetical protein","Outer membrane, Inner membrane, Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR012505
Family
YbbR-like
PF07949\"[57-141]T\"[158-236]TYbbR


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Feb 20 13:22:14 MST 2001","","Tue Feb 20 13:22:14 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 20 13:22:14 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Feb 20 13:22:14 MST 2001","34540300","","","","","","1","","22","PG0484" "PG0443","525415","525080","336","ATGGATTTCATCTTTCTTCAGGCCGCACCACAAGCCGGAGGCCTGTTCGGAGGCTCAAGCCAGATGATTCTGGTGCTCGTGCTCATGGTAGTAATCTTTTACTTCTTCATGATCAGGCCTCAGCAAAAACGTCAGAAAGAGCTTCAGCGTCAGCGCGAAGCCCTCGCCAAAGGAGACAAAATAATCACCGCAGGCGGTATACACGGCACCATACGCGAGGTTCGCGAAAAAGATTTCTTGGTCGAAATCGCCAATGGCGTGAACATCCGCATCGATAAAGGGTCTGTATATGTATCTGCTCGCGAAGCGGAAACAGACATGGCCAACAAGAAAGAC","10.20","3.23","12557","MDFIFLQAAPQAGGLFGGSSQMILVLVLMVVIFYFFMIRPQQKRQKELQRQREALAKGDKIITAGGIHGTIREVREKDFLVEIANGVNIRIDKGSVYVSAREAETDMANKKD","525415 525080","TIGR ID: PG0485","hypothetical protein (uncharacterized secreted protein)","Inner membrane, Cytoplasm","No significant hits found in gapped BLAST.","
InterPro
IPR003849
Family
YajC
PD374630\"[54-74]TYajC
PR01853\"[20-40]T\"[58-76]TYAJCTRNLCASE
PF02699\"[18-100]TYajC
TIGR00739\"[18-103]TyajC


","BeTs to 8 clades of COG1862COG name: Uncharacterized secreted proteins, YajC familyFunctional Class: SThe phylogenetic pattern of COG1862 is -----qv-ebrhuj--o-inxNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Apr 5 18:39:38 MDT 2001","Tue Mar 27 13:18:04 MST 2001","Tue Mar 27 13:18:04 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 20 13:23:36 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 18 to 100 (E-value = 3.4e-26) place PG0443 in the YajC family which is described as Preprotein translocase subunit (PF02699)","Tue Mar 27 13:18:04 MST 2001","34540301","","","","","","1","","22","PG0485" "PG0444","526025","525501","525","ATGATAAAATACAGCATGGAAACAATCTGCATTCAGCACTACCAATCGCCATGCGGCGATCTTATCCTCGGCTCCTATGGGCATCAGCTTTGCATGTGTGACTGGGTACATAAGGAACGCAAGGAAATTATTGACATGGGGCTGCAAAAAAGGCTGTGCTCCTCATACGAGATCGCACTGTCGCCCGTCTTGAAAGAGACAATCGCCCAACTGGACGAATACTTCTCTCACAAGAGAGAGACTTTCGACATCCCCCTGCTTATGGCAGGAACGGAGTTTCAGCAAACGGTATGGGGCGAGCTGCTGAATATCCCCTACGGCACCACGATCTCATACGCCACTCTTGCACGACGAATAGGAAACCCCAAAGCCGTGAGGGCCGTAGCCCGTGCCAACGGAGCCAATCCCATATCCATCCTCGTGCCGTGCCATCGGGTAATTGGAAGCGACAATACGCTGACAGGTTACGGTGGGGGATTGGACAAAAAGGAATTCCTGCTTCGTCATGAAATGAGTCTGCCGGTC","7.40","1.15","19646","MIKYSMETICIQHYQSPCGDLILGSYGHQLCMCDWVHKERKEIIDMGLQKRLCSSYEIALSPVLKETIAQLDEYFSHKRETFDIPLLMAGTEFQQTVWGELLNIPYGTTISYATLARRIGNPKAVRAVARANGANPISILVPCHRVIGSDNTLTGYGGGLDKKEFLLRHEMSLPV","526025 525501","TIGR ID: PG0486","methylated-DNA-protein-cysteine methyltransferase","Cytoplasm","Residues 17 to 170 share 43% identity with gb|AAF96913.1| (AE004427), a methylated-DNA--protein-cysteine S-methyltransferasein Vibrio cholerae.Residues 7 to 170 share 39% identity with gb|AAC25987.1| (AF047839), an adaptive response regulatory protein in Pseudoalteromonas sp. S9.Residues 16 to 170 share 41% identity with gb|AAF61716.1|AF232768_1 (AF232768) putative methylated-DNA-protein-cysteine methyltransferase in Pseudomonas fluorescens.This region also shares strong similarity with a number of additional bacterial methylated-DNA-protein-cysteine methyltransferases.","
InterPro
IPR001497
Active_site
Methylated-DNA-[protein]-cysteine S-methyltransferase, active site
PS00374\"[141-147]TMGMT
InterPro
IPR011991
Domain
Winged helix repressor DNA-binding
G3DSA:1.10.10.10\"[90-170]TWing_hlx_DNA_bd
InterPro
IPR014048
Domain
Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding
PF01035\"[90-175]TDNA_binding_1
TIGR00589\"[91-170]Togt
noIPR
unintegrated
unintegrated
PTHR10815\"[55-170]TPTHR10815
SSF46767\"[90-170]TSSF46767
SSF53155\"[7-98]TSSF53155


","BeTs to 13 clades of COG0350COG name: Methylated DNA-protein cysteine methyltransferaseFunctional Class: LThe phylogenetic pattern of COG0350 is amtkyqv-EBRhuj---lin-Number of proteins in this genome belonging to this COG is 1","***** IPB001497 (Methylated-DNA--protein-cysteine methyltransferase) with a combined E-value of 3.7e-46. IPB001497A 90-131 IPB001497B 132-159","Residues 90-170 are 50% similar to a (METHYLTRANSFERASE TRANSFERASE) protein domain (PD002730) which is seen in OGT_HAEIN.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Apr 26 18:36:39 MDT 2001","Sat Feb 24 20:26:45 MST 2001","Thu Apr 26 18:36:39 MDT 2001","Sat Feb 24 20:26:45 MST 2001","Sat Feb 24 20:26:45 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Sat Feb 24 20:26:45 MST 2001","-56% similar to PDB:1SFE ADA O6-METHYLGUANINE-DNA METHYLTRANSFERASE FROM ESCHERICHIA COLI (E_value = 6.6E_16);-47% similar to PDB:1EH6 HUMAN O6-ALKYLGUANINE-DNA ALKYLTRANSFERASE (E_value = 3.4E_12);-47% similar to PDB:1EH7 METHYLATED HUMAN O6-ALKYLGUANINE-DNA ALKYLTRANSFERASE (E_value = 3.4E_12);-47% similar to PDB:1EH8 BENZYLATED HUMAN O6-ALKYLGUANINE-DNA ALKYLTRANSFERASE (E_value = 3.4E_12);-47% similar to PDB:1QNT X-RAY STRUCTURE OF HUMAN O6ALKYLGUANINE-DNA ALKYLTRANSFERASE (E_value = 3.4E_12);","","","Residues 90 to 175 (E-value = 2.4e-47) place PG0444 in the Methyltransf_1 family which is described as 6-O-methylguanine DNA methyltransferase, DNA binding domain (PF01035)","Thu Apr 26 18:36:39 MDT 2001","34540302","","","","","","1","","22","PG0486" "PG0445","527524","526370","1155","ATGAGTACAAATATAAGCCTATTCGCCCAAGTTATCCGCCTGTTGCCTCGTCCATTGATTAAGAAGCTCTCTACAGAGTTTCAGGTAGACAAGCACAGCAAGCATTTCACCTCATGGCAGCACTTAGTGAGCATGATTTTCAGCCAATTCTCAAGCTGTATCTCCTTACGCGAGATTAGTAATGGCTTACGCTCAGCCACAGGTAACCTCAACCACTTAGGCATATGCACAGCACCCTCTAAGTCCAATTTATCTTATCAGAACGAGCACCGTACCTCAGACTTCTTTCGAGCGTGCTATTATGCCTTGCTAGATTATTTCGGACAGCAGGGTATGGGGCAAGGGCGTAAGTTTCGTTTTAAGCAACCCGTCAAGCTTCTAGACTCTACGACCATTACCCTTTGCCTTGCCCTATACGATTGGGCTAAATACACACATACGAAGGGAGCTGTTAAGCTTCATACACTCTTAGACTTCAAGACTCTGTTGCCTGAATATGTGCATATTAGTGATGGTAAAGGACATGATGGCAAGATGGCCAATTCTATTCCTATCCCAGCAGGAAGTATCGTCGTGGCTGACCGTGGCTATGCTGATACCGCCTTGCTCAATAGTTGGGACAGCACCCAAGTGAGTTTTGTAGTACGCCACCCAAGGTCCTTAAAATATGAGGTTATTCAAGAGTTGGAACTCCCAGAACATGGGCATCAGCAAATACTCGTAGATCAGAGAGTACGGCTCACAGGCGTTCAGACGCAAGGCAAGTACACTAAGCCATTGAGGCATATTGCCCTCTACAACGAGCAACATGGCGATGTCGTTGAGTTATTGACCAACATAGACACCCTTGCAGCAAGTAGTATAGCCTTGCTGTATCGTTCAAGATGGCTTATCGAGATTTTCTTTCGGAATTTGAAGCAACGCCTCAGCATGAAGGCCTTTCTTGGAACAACGCGCAATGCCGTAGAGGTGCAAATATGGACGGCTCTTATTACAATGCTTTTGATGGTCTATCTCAAGAGTATCGCCAAATATCGGTGGTGCTTGTCTAATCTTGTCTCTTCGCTAAGAATCAACACATTTACCAAGATGGATCTGATGCAATGGCTTAATGAGCCGTTTACGCCTCCGCCAGAGCCCGAAAATCAGCTCTTT","10.20","16.13","44087","MSTNISLFAQVIRLLPRPLIKKLSTEFQVDKHSKHFTSWQHLVSMIFSQFSSCISLREISNGLRSATGNLNHLGICTAPSKSNLSYQNEHRTSDFFRACYYALLDYFGQQGMGQGRKFRFKQPVKLLDSTTITLCLALYDWAKYTHTKGAVKLHTLLDFKTLLPEYVHISDGKGHDGKMANSIPIPAGSIVVADRGYADTALLNSWDSTQVSFVVRHPRSLKYEVIQELELPEHGHQQILVDQRVRLTGVQTQGKYTKPLRHIALYNEQHGDVVELLTNIDTLAASSIALLYRSRWLIEIFFRNLKQRLSMKAFLGTTRNAVEVQIWTALITMLLMVYLKSIAKYRWCLSNLVSSLRINTFTKMDLMQWLNEPFTPPPEPENQLF","527551 526370","Member of the IS5 family of IS elements.TIGR ID: PG0487","ISPg4 transposase","Inner membrane, Cytoplasm","PG0445 is equivalent to the previously sequenced AF148127 in GenBANK. See also AB009361, AB003149. Residues 20-337 are 27% similar to a transposase from B.subtilis (AB031551).","
InterPro
IPR002559
Domain
Transposase, IS4-like
PF01609\"[124-335]TTransposase_11
InterPro
IPR012337
Domain
Polynucleotidyl transferase, Ribonuclease H fold
SSF53098\"[185-350]TRNaseH_fold


","No hit to the COGs database.","***** PF01609 (Transposase (IS4 family)) with a combined E-value of 1.4e-08. PF01609B 288-309","Residues 271-336 are 45% similar to a (TRANSPOSASE PUTATIVE PLASMID ELEMENT) protein domain (PD003301) which is seen in Y4ZB_RHISN.","","Thu Jun 14 09:29:47 MDT 2001","","Thu Jun 14 09:29:47 MDT 2001","Thu Jun 14 09:29:47 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 09:29:47 MDT 2001","Thu Jun 14 09:29:47 MDT 2001","","Wed Jun 20 13:48:54 MDT 2001","Fri Feb 9 09:04:36 MST 2001","Fri Feb 9 09:04:36 MST 2001","Mon Dec 4 11:43:39 MST 2000","Wed Jun 20 13:48:54 MDT 2001","Wed Jun 20 13:48:54 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG0445 is paralogously related to PG1461, PG1114, PG1920, PG0043, PG1447, PG0868, PG00162, PG0205, and PG0016, all predicted ISPg4-related transposases.","Fri Feb 9 09:04:36 MST 2001","Thu Jun 14 09:29:47 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 124 to 335 (E-value = 6.9e-43) place PG0445 in the Transposase_11 family which is described as Transposase DDE domain (PF01609)","Wed Jun 20 13:48:54 MDT 2001","34540303","","Sawada,K., Kokeguchi,S., Hongyo,H., Sawada,S., Miyamoto,M.,Maeda,H., Nishimura,F., Takashiba,S. and Murayama,Y.Identification by subtractive hybridization of a novel insertionsequence specific for virulent strains of porphyromonas gingivalis. Infect. Immun. 67 (11), 5621-5625 (1999)","Nagai,T., Phan Tran,L.S., Inatsu,Y. and Itoh,Y.A new IS4 family insertion sequence, IS4Bsu1, responsible forgenetic instability of poly-gamma-glutamic acid production inbacillus subtilis. J. Bacteriol. 182 (9), 2387-2392 (2000)","Fri Feb 9 09:06:23 MST 2001","Fri Feb 9 09:06:23 MST 2001","1","","22","PG0487" "PG0446","528310","529338","1029","ATGACTGAAGAATTTGACATTAGACAGGAGCGTTACCGCGGCAACGACGGCGAACGGGAAGTCGAAAACAAGCTACGCCCCCTGACGTTCGACAGCTTTAGCGGTCAGGACAAGGTGGTGGAGAATCTGAGCATCTTCGTTGCTGCAGCTCGTTTGCGCGGCGAGGCCTTGGATCATACGCTGCTGCATGGCCCTCCGGGGCTGGGTAAGACCACGTTGTCGAATATCATAGCCAATGAGCTTGGCGTGGGGCTTAAGATCACTTCCGGTCCCGTCCTCGACAAGCCGGGTGATTTGGCCGGACTCCTCAGTTCGTTGGAATCCAACGATGTACTTTTCATAGACGAAATACACCGGCTGAGCCCTGTAGTGGAAGAATATCTCTACTCGGCCATGGAGGACTACCGTATAGATATAATGCTGGACAAGGGACCCAGCGCGCGCTCCATTCAGATCAATCTCTCCCCCTTCACCCTTGTGGGAGCTACTACGCGCAGCGGTTTGCTGACGGCACCCCTTCGCGCCCGTTTCGGGATCAATCTTCATCTGGAGTATTACGATGTGCATACTATTACCGGTATCGTGGAGCGGAGTGCACGCATTCTGGAGGTGTCCTGTTCGCACGATGCTGCCGTAGAGATAGCGGGACGAAGCCGTGGTACGCCTCGTATAGCCAATGCCTTGCTGCGACGTGTAAGGGACTTTGCACAAGTCAAGGGATCCGGTGCCATTGACAAACCGATAGCCTGCTATGCTCTCGAAGCCCTGAATATCGACCGCTACGGACTGGACAATGTGGATCACAAGCTCCTCGCCACCATCATAGACAAGTTCGCCGGAGGCCCCGTCGGATTGAGCACCATTGCCACGGCCTTGGGGGAAGACCCCGGTACGATAGAGGAGGTCTATGAGCCATTCCTGATCAAGGAGGGATTCCTCAAGCGGACACCTCGCGGAAGAGAAGTGACGGAGCTGGCTTATACGCACTTGGGACGTAATCCCCGTCCGCACCGGCCATCCCTCTTCGAC","5.90","-5.90","37712","MTEEFDIRQERYRGNDGEREVENKLRPLTFDSFSGQDKVVENLSIFVAAARLRGEALDHTLLHGPPGLGKTTLSNIIANELGVGLKITSGPVLDKPGDLAGLLSSLESNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMLDKGPSARSIQINLSPFTLVGATTRSGLLTAPLRARFGINLHLEYYDVHTITGIVERSARILEVSCSHDAAVEIAGRSRGTPRIANALLRRVRDFAQVKGSGAIDKPIACYALEALNIDRYGLDNVDHKLLATIIDKFAGGPVGLSTIATALGEDPGTIEEVYEPFLIKEGFLKRTPRGREVTELAYTHLGRNPRPHRPSLFD","528247 529338","TIGR ID: PG0488","Holliday Junction DNA helicase (RUVB)","Cytoplasm","Numerous significant hits to Holliday junction DNA helicase proteins in gapped BLAST; e.g. residues 18-331 are 62% similar to gb|AAF41624.1| Holliday junction DNA helicase RuvB of Neisseriameningitidis MC58, residues 18-339 are 59% similar to dbj|BAB35993.1| Holliday junction helicase subunit A of Escherichia coli O157:H7, residues 14-333 are 58% similar to gb|AAG04356.1|AE004530_9 Holliday junction DNA helicase RuvB of Pseudomonas aeruginosa, residues 18-331 are 59% similar to gb|AAF94993.1| Holliday junction DNA helicase RuvB of Vibrio cholerae.This sequence is similar to BT3285.","
InterPro
IPR003593
Domain
AAA+ ATPase, core
SM00382\"[56-187]TAAA
InterPro
IPR003959
Domain
AAA ATPase, core
PF00004\"[59-242]TAAA
InterPro
IPR004605
Family
Holliday junction DNA helicase RuvB
TIGR00635\"[28-332]TruvB
InterPro
IPR008823
Domain
Holliday junction DNA helicase RuvB, C-terminal
PF05491\"[255-333]TRuvB_C
InterPro
IPR008824
Domain
Holliday junction DNA helicase RuvB, N-terminal
PF05496\"[4-58]TRuvB_N
InterPro
IPR011991
Domain
Winged helix repressor DNA-binding
G3DSA:1.10.10.10\"[262-340]TWing_hlx_DNA_bd
noIPR
unintegrated
unintegrated
G3DSA:1.10.8.60\"[187-261]TG3DSA:1.10.8.60
G3DSA:3.40.50.300\"[23-186]TG3DSA:3.40.50.300
PTHR13779\"[29-337]TPTHR13779
PTHR13779:SF2\"[29-337]TPTHR13779:SF2
SSF46785\"[261-336]TSSF46785
SSF52540\"[23-260]TSSF52540


","BeTs to 11 clades of COG2255COG name: Helicase subunit of the Holliday junction resolvase (RuvB)Functional Class: LThe phylogenetic pattern of COG2255 is ------vceB-hujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB001939 (AAA-protein (ATPases associated with various cellular activities)) with a combined E-value of 1.4e-16. IPB001939A 30-50 IPB001939B 57-78 IPB001939C 91-124 IPB001939D 143-189","Residues 85-134 are 74% similar to a (HELICASE HOLLIDAY JUNCTION DNA RUVB REPAIR SOS RESPONSE) protein domain (PD003018) which is seen in RUVB_PSEAE.Residues 14-82 are 52% similar to a (PROTEIN DNA ATP-BINDING SUBUNIT REPLICATION FACTOR C) protein domain (PD000893) which is seen in RUVB_PSEAE.Residues 262-334 are 63% similar to a (HELICASE HOLLIDAY JUNCTION DNA) protein domain (PD005323) which is seen in RUVB_THETH.Residues 135-254 are 55% similar to a (HELICASE HOLLIDAY JUNCTION DNA RUVB REPAIR SOS RESPONSE) protein domain (PD149882) which is seen in RUVB_MYCTU.Residues 27-259 are 55% similar to a (PROTEIN ATP-BINDING PROTEASE SUBUNIT REGULATORY HOMOLOG) protein domain (PD000092) which is seen in RUVB_THETH.","","Thu Jun 14 09:38:14 MDT 2001","","Thu Jun 14 09:38:14 MDT 2001","Thu Jun 14 09:38:14 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 09:38:14 MDT 2001","Thu Jun 14 09:38:14 MDT 2001","","","Mon Dec 22 10:25:51 2003","Mon Dec 22 10:25:51 2003","Thu Apr 11 15:49:16 2002","Wed Jun 20 13:44:04 MDT 2001","Wed Jun 20 13:44:04 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 24-133 show 30% similarity to PG0982, an undefined ATPase.","Thu Jun 14 09:39:51 MDT 2001","Wed Mar 14 16:42:35 MST 2001","-75% similar to PDB:1IXS Structure of RuvB complexed with RuvA domain III (E_value = 3.9E_98);-75% similar to PDB:1HQC STRUCTURE OF RUVB FROM THERMUS THERMOPHILUS HB8 (E_value = 6.6E_98);-75% similar to PDB:1IXR RuvA-RuvB complex (E_value = 4.7E_96);-75% similar to PDB:1IN4 THERMOTOGA MARITIMA RUVB HOLLIDAY JUNCTION BRANCH MIGRATION MOTOR (E_value = 2.4E_95);-75% similar to PDB:1IN5 THERMOGOTA MARITIMA RUVB A156S MUTANT (E_value = 5.2E_95);","","","Residues 4 to 58 (E-value = 3.6e-12) place PG0446 in the RuvB_N family which is described as Holliday junction DNA helicase ruvB N-terminus (PF05496)Residues 59 to 242 (E-value = 7.2e-28) place PG0446 in the AAA family which is described as ATPase family associated with various cellular activities (AAA) (PF00004)Residues 255 to 333 (E-value = 9e-47) place PG0446 in the RuvB_C family which is described as Holliday junction DNA helicase ruvB C-terminus (PF05491)","Mon Dec 22 10:25:51 2003","34540304","","","","","","1","","","PG0488" "PG0447","529388","530866","1479","ATGAAAGATACGGCCGTTTACGGCCTGAGTACCATCCTGGTACGTCTGCTCAACTGGCTGATGACCATCGTCTATGTACGCGCACTGCCGGGCACGGCCGACTTCGGCAATATGACCAATCTATACGCTTGGACGGCACTGGCCATGATCGTCCTGACTTATGGGATGGAGACCGGTTTCTTCCGCTTCATCAATAAGGCCGAACGTCCGAACGAAGTTTATTCCACCACGTTGTGGTCTTTGGGGGCTACATCCACATTCTTCCTTTGTGCAGGCCTGCTTTTTCTCCGACCGCTCAGTGGGAGTATGGGCTATGCCGCTCATCCGGAGTACGTGGGCCTGCTGCTCGCTATCGTGGCGATGGATGCTTTCATGGCCATTCCATTGGCCTATCTGCGCTATGCGAACCGGCCGTGGCGATTTATGTTCGTTCGGCTGACATTCATCCTGCTGACCATCGTCCTTACGATCTTTTTCCTCTTCCTGTGTCCCCGTATTTATGCCTTACATCCGGAGTGGATCGATAGCTTCTACCGCCCGAACTACGAATTGGGGTACGTGTTCGTCATCAACTTCATTTGCAACCTCGTGCAGATGGTCATGCTTTTTCCTCATTGGCGGCATGCCGGCCGCGTATTTCGTCCGGACGTTCTGCGCAAGATGCTGGCCTATTCTTTCCCTATTCTGCTGTTGGGCTTGGCCGGCAGCTTCAACAATCAGGCCGATAAGATTCTCTTTCCCATGCTTTTCGACGATCCGGCGGAGGGGAAAGCACAGCTCGGTATCTATGGCGCGTGCTACAAGCTGGCCATCATCATGGTGATGTTCACCCAGGCCTTTCGCTATGCCTACGATCCTTTCGTCTTCGCCAAGATCAAAAGTGGCGAGGAAGAGGGAAAGGAGTCCTATGCTACGGCGATGAAGTACTTCGTTATCTTCGTCTGTTTCATCTATCTGGGTGTGATGGCCTATATGGACATCCTCAAGCACTTTGTCGGTCCGGCGTATTACGGAGGGCTCAAGGTCGTACCTTTCGTGATGCTGGGGCAGTTGATGTTCGGCATTTACTTCAATCTCTCGCTTTGGTACAAGGTCACCGATCGAACGATATGGGGTGCAGTCTTTTCTCTGATCGGCTGTGTTACTACGGTGCTGATCATCGTCTTCGGTGCGCGTACCTACGGCTTTATGGCTTGTGCATGGGCTTCGGTGATCAGCAATGGCCTGATCATGCTGCTTTCTTATTTTATGGGGAGGTACTATTTCCCCGTTCCATACCGTCTCGGAAACGCTTTGTTCTATGCCGCTCTGACAGCTTTGCTCGTGGGCGGAACATATTGTGTGGCCTATCTGTTTCCGCAGTATACAGCCCTTCGATTGGGTGTCAACACATTGTTTGTCTTATTATTTGTCATCATAGCTTTCAGGAAAGACCTGAGTGGGATAGCAGTCCCCATGCTCAATAGAATACGAAAAAGA","10.20","17.82","56196","MKDTAVYGLSTILVRLLNWLMTIVYVRALPGTADFGNMTNLYAWTALAMIVLTYGMETGFFRFINKAERPNEVYSTTLWSLGATSTFFLCAGLLFLRPLSGSMGYAAHPEYVGLLLAIVAMDAFMAIPLAYLRYANRPWRFMFVRLTFILLTIVLTIFFLFLCPRIYALHPEWIDSFYRPNYELGYVFVINFICNLVQMVMLFPHWRHAGRVFRPDVLRKMLAYSFPILLLGLAGSFNNQADKILFPMLFDDPAEGKAQLGIYGACYKLAIIMVMFTQAFRYAYDPFVFAKIKSGEEEGKESYATAMKYFVIFVCFIYLGVMAYMDILKHFVGPAYYGGLKVVPFVMLGQLMFGIYFNLSLWYKVTDRTIWGAVFSLIGCVTTVLIIVFGARTYGFMACAWASVISNGLIMLLSYFMGRYYFPVPYRLGNALFYAALTALLVGGTYCVAYLFPQYTALRLGVNTLFVLLFVIIAFRKDLSGIAVPMLNRIRKR","529364 530866","TIGR ID: PG0489","conserved hypothetical protein","Inner membrane, Cytoplasm","Residues 6-493 are 19% similar to CpsIbL from Streptococcusagalactiae (gi|12697601|). This sequence is strongly similar to BT3287.","
InterPro
IPR002797
Family
Polysaccharide biosynthesis protein
PF01943\"[2-293]TPolysacc_synt


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 10:42:42 MDT 2001","","Thu Jun 14 10:42:42 MDT 2001","Thu Jun 14 10:42:42 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 10:42:42 MDT 2001","Thu Jun 14 10:42:42 MDT 2001","","","Mon Dec 22 10:27:41 2003","Mon Dec 22 10:27:41 2003","Tue Feb 20 13:25:37 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 20 13:25:37 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Jun 20 13:36:11 MDT 2001","34540305","","","","","","1","","","PG0489" "PG0448","530969","532306","1338","GTGGAGTATATCAAGTCGCTCCTCGACCTCCGACAAGAGAAAGAGAACGACTATCAGACCATCGACCTTATCAAGGCAGATGTCGATTTCCGTGGAACGAAGCTCTGGATCCTTATCTTCGCCATCTTCATCGCTTCTCTTGGTCTTAATGTCAATTCGACTGCCGTTATCATCGGTGCCATGTTGATCTCCCCGCTTATGGGACCGATCATCGGATTCGGCTTGGGACTGGGGATTTTGGATTTCGAGCTTGTCAAGCGTTCGCTCCGCAACTTGGGGTTGGCCACGCTTTTCAGTATTCTCACGGCTACGTTGTTTTTCTTTATCTCTCCTGTCGGACAAGAACAGAGCGAACTTTTGGCACGTACGCAGCCTACTCTGTACGACGTGCTGATCGCATTCTTCGGTGGTGCTGCGGGGATTGTCGCCGGCAGTACCAAAAGCAAGGGCAATGTAATACCCGGTGTGGCTATCGCGACGGCCCTTATGCCTCCTCTCTGTACTGCCGGTTTCGGCCTTGGTACTGGGCAGTTTGCATATTTCTTCGGGGCTTTCTATCTCTTCATCATCAATTCTGTATTTATCGCACTGGCTACCTTCCTTGCAGTACGTTTGCTGAAGTTCCCACGCAAAGTCTTCCTCAATAAACAGCGAGAGCAGAAAGTGCGCCGGATCATTACGGTCATTGCCATATGTACGATTGCTCCGAGTATCTATCTGAGCATACAGCTCTTCAGCAACAATCTACTTCAGGAAAACGCACACAAGTACGTGCGAGAGGTGATCGGCAGTATCCCCAATACGCAGGTCATACGCGACCAGCTACTGGAAGAGAACAACCGGAAGCATATAGAAGTGGTATTGATCGGTGCTACCGTTTCTCCGGCTCAGATAGACAGTGCGAAGACGAAGCTCTCTTCATACGGTTTGTCCGGCGTAGAACTGAACATCAAACAGGGCTTCGGTTATGAGCAGGAAGAGACCGATGTGAACGAACTGAAAAGCGTTTTGCTGAAAGACCTCTATGACAATGGCGAGAAAATCATTCGAAACCAGCAGCGGCAGATCGATTCGCTCCGAAATGTATTAAACTTCTACAACCGTTTCTCTTCGATGGAGAGTGAGATAGCCCAAGAGCTGCAAGTGATTTTCCCCTCTATCAATTCGGCTATGCTGGTACCTTCGTCCGGAGTGGCACAGGGTAGGGATTCCGTTTTGCTCGTCGTGGTGCGTCCGAAAGACCGGATAAGCCAGTCGGAAATAAACAAGCTAAGCACATGGATGGCTACGCGTACCAAGACCAAGAAAGTGCGCCTTATCATAGACAATAATCATAGG","10.10","9.65","49487","VEYIKSLLDLRQEKENDYQTIDLIKADVDFRGTKLWILIFAIFIASLGLNVNSTAVIIGAMLISPLMGPIIGFGLGLGILDFELVKRSLRNLGLATLFSILTATLFFFISPVGQEQSELLARTQPTLYDVLIAFFGGAAGIVAGSTKSKGNVIPGVAIATALMPPLCTAGFGLGTGQFAYFFGAFYLFIINSVFIALATFLAVRLLKFPRKVFLNKQREQKVRRIITVIAICTIAPSIYLSIQLFSNNLLQENAHKYVREVIGSIPNTQVIRDQLLEENNRKHIEVVLIGATVSPAQIDSAKTKLSSYGLSGVELNIKQGFGYEQEETDVNELKSVLLKDLYDNGEKIIRNQQRQIDSLRNVLNFYNRFSSMESEIAQELQVIFPSINSAMLVPSSGVAQGRDSVLLVVVRPKDRISQSEINKLSTWMATRTKTKKVRLIIDNNHR","530891 532306","TIGR ID: PG0490","conserved hypothetical protein","Inner membrane, Cytoplasm","Residues 15 to 208 share 42% identity with pir||S74882, a hypothetical protein sll1151 in Synechocystis sp. (strain PCC 6803).This sequence is similar to BT3288.","
InterPro
IPR005240
Family
Protein of unknown function DUF389
PF04087\"[47-198]TDUF389
noIPR
unintegrated
unintegrated
PTHR20992\"[7-321]TUNCHARACTERIZED
PTHR20992:SF9\"[7-321]TUNCHARACTERIZED
signalp\"[1-48]?signal-peptide
tmhmm\"[32-50]?\"[56-76]?\"[91-111]?\"[125-143]?\"[153-173]?\"[179-201]?\"[222-242]?transmembrane_regions


","BeTs to 3 clades of COG1808COG name: Uncharacterized ACRFunctional Class: SThe phylogenetic pattern of COG1808 is aM-----c-------------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 38-174 are 42% similar to a (PROTEIN TRANSMEMBRANE CONSERVED MJ0678) protein domain (PD017762) which is seen in P73791_SYNY3.","","Thu Jun 14 10:43:39 MDT 2001","","Thu Jun 14 10:43:39 MDT 2001","Thu Jun 14 10:43:39 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 10:43:39 MDT 2001","Thu Jun 14 10:43:39 MDT 2001","","","Sat Feb 24 20:21:35 MST 2001","Mon Dec 22 10:29:09 2003","Thu Jun 14 10:43:39 MDT 2001","","Wed Jun 20 13:30:49 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Sat Feb 24 20:21:35 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 47 to 198 (E-value = 4.3e-76) place PG0448 in the DUF389 family which is described as Domain of unknown function (DUF389) (PF04087)","Wed Jun 20 13:30:49 MDT 2001","34540306","","","","","","1","","","PG0490" "PG0449","532325","534460","2136","ATGCAAATGAAATTAAAAAGTATTCTTCTCGGAGCAGCCCTGCTGTTGGGTGCTTCAGGGGTAGCCAAAGCCGACAAAGGCATGTGGCTCCTCAACGAACTCAATCAGGAGAATCTGGATCGAATGCGTGAGCTCGGCTTTACGCTCCCGTTGGATTCGCTCTACAGTTTCGACAAGCCGTCCATTGCCAATGCCGTGGTTATCTTCGGTGGCGGATGTACCGGTATCACAGTGTCCGATCAGGGCCTGATCTTTACCAACCACCACTGCGGATACGGTGCTATCCAGAGCCAAAGCACGGTGGATCACGACTATCTGCGCGATGGTTTCGTTTCTCGCACGATGGGTGAGGAGCTTCCGATTCCGGGTCTTTCCGTGAAGTATCTGCGCAAGATCGTGAAGGTAACGGACAAGGTAGAAGGACAGCTCAAGGGTATCACTGACGAGATGGAGCGTCTGCGCAAAGCTCAGGAGGTATGCCAAGAACTGGCCAAAAAAGAAAATGCAGACGAGAACCAACTCTGCATCGTAGAGCCTTTCTATTCCAACAACGAATACTTCCTCATCGTCTACGATGTATTCAAGGACGTTCGTATGGTATTTGCTCCTCCCAGCTCTGTAGGTAAGTTCGGAGGCGATACGGACAACTGGATGTGGCCGCGTCACACGGGCGACTTCAGCGTATTCCGCGTGTATGCCGGTGCCGACAACCGGCCGGCCGAATACAGCAAGGACAATAAACCCTATAAGCCCGTTTACTTCGCTGCCGTATCCATGCAAGGCTACAAGGCTGACGACTATGCCATGACCATCGGTTTCCCGGGCAGTACGGATCGCTACCTCACTTCTTGGGGTGTGGAAGATCGTATCGAAAACGAGAACAATCCTCGTATCGAAGTTCGCGGTATCAAGCAAGGCATCTGGAAGGAAGCCATGAGCGCAGATCAGGCTACCCGTATCAAATATGCCAGCAAGTATGCTCAGAGTGCTAACTATTGGAAGAATTCGATCGGTATGAACCGCGGTCTCGCTCGTCTTGACGTGATAGGTCGTAAGCGTGCCGAGGAAAGAGCATTCGCAGACTGGATCCGTAAGAACGGCAAGAGTGCTGTCTATGGCGATGTATTGTCTTCTCTCGAAAAGGCTTATAAGGAAGGAGCCAAGGCCAACCGTGAGATGACTTATTTGAGCGAGACGCTCTTCGGTGGTACCGAGGTGGTTCGTTTTGCACAGTTTGCCAACGCATTGGCTACAAATCCTGATGCTCATGCCGGTATCCTCAAATCGCTTGACGACAAGTACAAAGACTACCTCCCCTCGCTCGACCGTAAGGTGCTGCCCGCCATGCTCGATATTGTACGCCGGCGTATCCCTGCCGACAAGCTCCCCGATATATTCAAGAATGTAATCGACAAGAAATTCAAAGGCGACACGAAGAAGTATGCAGACTTCGTATTCGACAAGAGTGTGGTTCCTTATAGCGACAAGTTCCATGCCATGCTCAAGTCCATGGACAAGGAAAAGTTTGCCAAGGCTATCGAGAAAGATCCGGCAGTAGAGCTTTCCAAGAGCGTAATAGCTGCTGCTCGCGCTATTCAGGCCGATGCGATGGCCAATGCCTATGCCATTGAGAAGGGCAAGCGTCTTTTCTTTGCCGGTTTGCGTGAGATGTACCCCGGACGTGCTCTGCCGAGCGATGCCAACTTCACCATGCGTATGAGCTACGGCTCCATCAAGGGATATGAACCGCAGGACGGTGCCTGGTACAACTATCATACGACAGGCAAGGGCGTATTGGAGAAGCAGGATCCTAAGAGCGATGAGTTTGCCGTACAGGAGAATATCCTCGACCTCTTCCGCACCAAAAACTATGGTCGCTATGCCGAGAACGGTCAGCTCCATATCGCTTTCCTATCGAACAACGACATCACGGGCGGTAACTCCGGTAGCCCCGTATTCGATAAGAACGGCCGTCTGATCGGTCTTGCTTTCGATGGCAACTGGGAAGCTATGAGTGGTGACATCGAGTTCGAACCCGATCTGCAGCGCACAATCAGCGTGGACATCCGCTACGTTCTCTTCATGATTGACAAATGGGGTCAGTGCCCCCGTCTCATCCAAGAGCTGAAGTTGATC","8.30","4.76","80101","MQMKLKSILLGAALLLGASGVAKADKGMWLLNELNQENLDRMRELGFTLPLDSLYSFDKPSIANAVVIFGGGCTGITVSDQGLIFTNHHCGYGAIQSQSTVDHDYLRDGFVSRTMGEELPIPGLSVKYLRKIVKVTDKVEGQLKGITDEMERLRKAQEVCQELAKKENADENQLCIVEPFYSNNEYFLIVYDVFKDVRMVFAPPSSVGKFGGDTDNWMWPRHTGDFSVFRVYAGADNRPAEYSKDNKPYKPVYFAAVSMQGYKADDYAMTIGFPGSTDRYLTSWGVEDRIENENNPRIEVRGIKQGIWKEAMSADQATRIKYASKYAQSANYWKNSIGMNRGLARLDVIGRKRAEERAFADWIRKNGKSAVYGDVLSSLEKAYKEGAKANREMTYLSETLFGGTEVVRFAQFANALATNPDAHAGILKSLDDKYKDYLPSLDRKVLPAMLDIVRRRIPADKLPDIFKNVIDKKFKGDTKKYADFVFDKSVVPYSDKFHAMLKSMDKEKFAKAIEKDPAVELSKSVIAAARAIQADAMANAYAIEKGKRLFFAGLREMYPGRALPSDANFTMRMSYGSIKGYEPQDGAWYNYHTTGKGVLEKQDPKSDEFAVQENILDLFRTKNYGRYAENGQLHIAFLSNNDITGGNSGSPVFDKNGRLIGLAFDGNWEAMSGDIEFEPDLQRTISVDIRYVLFMIDKWGQCPRLIQELKLI","532325 534460","TIGR ID: PG0491","conserved hypothetical protein","Periplasm","One significant hit in gapped BLAST; e.g. residues 26-711 are 31% similar to gb|AAF84693.1|AE004008_17 hypothetical protein of Xylella fastidiosa.This sequence is similar to BT3289.","
InterPro
IPR009003
Domain
Peptidase, trypsin-like serine and cysteine
SSF50494\"[28-712]TPept_Ser_Cys
noIPR
unintegrated
unintegrated
G3DSA:2.40.10.10\"[577-695]TG3DSA:2.40.10.10


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Feb 21 14:04:35 MST 2001","Mon Dec 22 10:30:40 2003","Wed Feb 21 14:04:35 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 6-712 are 38% similar to PG1131, a predicted conserved hypothetical protein.","Wed Feb 21 14:06:51 MST 2001","Wed Feb 21 14:04:35 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Feb 21 14:04:35 MST 2001","34540307","","","","","","1","","","PG0491" "PG0450","534759","534502","258","GTGAGCAAAAACGATACCGAAAAGATACTTCTTGATGACCTTCTCTTTTTGCAAAGGGCTCCTTATTATGAATCATTTTCAGTTTATAAAATCGATTCCAATAAATATATAGAGAACGAAAACGATTCGCATATAGACCGTTGGCTTTCGATGGCCGTTTCGGGAGATGATAAAACAGAGGCACCCACCGAGTTCGTGATCGAACCGGGTGGGTGCCTTATATCCTTGGTTGTCGATAGGAGGCTTATCAGTCTCTAT","4.30","-6.82","9887","VSKNDTEKILLDDLLFLQRAPYYESFSVYKIDSNKYIENENDSHIDRWLSMAVSGDDKTEAPTEFVIEPGGCLISLVVDRRLISLY","534759 534502","TIGR ID: PG0492","hypothetical protein","Cytoplasm","This sequence corresponds to gi:34396620 in Genbank.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Apr 5 20:05:10 MDT 2001","Thu Mar 3 10:05:51 2005","Tue Feb 20 13:27:52 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 20 13:27:52 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Apr 5 20:04:18 MDT 2001","34540308","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Thu Mar 3 10:05:51 2005","","1","","","PG0492" "PG0451","535457","535188","270","TTGAGGATATTCCTTATAGGTGTCTCCTATATGGAGACCTTTGCACAACAAGCAGGCATTTTATCCATTCATTTTATTGTGTACCGGCCGATTGTTTTGTGTGTTTATGGTATGATCAATGACACAAAACGATGGTACGACAAGGAAAATCATCCGACGAGAAGAGGTTTCATTCAGGGACGTCATGCCAGCGAATCGATACGGGAAAGCACGGAATGTATTTTTGACCCAAGTCGATACGCTTATATGAGAGGATACTATGGTCTCCTA","9.40","3.61","10614","LRIFLIGVSYMETFAQQAGILSIHFIVYRPIVLCVYGMINDTKRWYDKENHPTRRGFIQGRHASESIRESTECIFDPSRYAYMRGYYGLL","535457 535188","TIGR ID: PG0494","hypothetical protein","Cytoplasm","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-15]?signal-peptide
tmhmm\"[19-39]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Apr 5 20:07:20 MDT 2001","","Tue Feb 20 13:29:09 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 20 13:29:09 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Apr 5 20:07:20 MDT 2001","34540310","","","","","","1","","","PG0494" "PG0452","535588","536994","1407","ATGAGAAAAATCATTATGAAAAAACTTTTTTTGGCCTCCGTGGCTTTCTTATGTGCATGGATTTGGAGCGCTAATGCTCAGACAATGGCTCCAAATTACTTCCATGCCGATCCGCAGCAATTCAAACACAGGATTGTAAAAGAAAAAAGCTTCTCCTCCTACTCTAATTACGAATACGGAGTCGACAACCGTCTGCAAAGGATCTATTCGGTGGATGAGTCTTCGGGAGAGATCGAACACGAAAGACGATTCTTTTTCAATGAAGGCGGATATATGATTCGTGAGGAGGAATACGATGGAACCGTTCAGATACCTGTCAGAAAATGGGAATTTGTCCGCGATGACAAGGGTTATATCACTCATTTCAGCAGATACTCGCCTAAAGATGGAAGTCAGGAGTTGATAGAGGATATCCGTATCGATTTTTCCTACGATGCCGATATGAAACTGATCAAAGCGGATATAGATTTCTTCGACATTATGGCCAATGTATGGGGCGATCTGCGCACGACAAAACTAGTCTATAATGAAAACGGACTCTTGAAAGAGATGATTCAAACCGATCCGGGAAGTGGACAAGAATTCAATCGGGAAGAGCTTACATACAATAACCTCAACAAAATAGTTGCTATCAGGTTTATACCGGGACCGGCCAGTACAGGTTTGAACGAATTTGAATTGATATACGAATACGACAGTGAAGGAATGGATATTGTCAAAGCCGGGCGTGACGATTTCTGGTACTACTATGAGTACGACAAAGAAATGCTCGCTTCAGAGACATTCTTCCCAAAGCCTTCCATAGCAGATTTAGTATATTTCGGACTTAAAGATTATGTGGATTTTTCAGGACTACCCTTCAAAAACAGTTATACTCATGTAGTAGTCAAAGAATCTACAAATGAAGTGGAAGCGATTTATGAACCTATCTCTGTATATTCCGTAGTGGTCATCCAGCCCGAAAATGGAGAGATAAAGCTAACGGCCGATGGGCAGCCCCTGAACAGCGGTTCCACATTAGTGGCAGGCCGTCGTATTAAAATACATCCCATCCCTGCCGAAGGTTACGAAGTGGACAAGGTAATGGTGAACGGAGAGAATATCGAAGCTCCGTATGAATTCCTTCTTGAGAAAGATACAGAAGTGACAGCCCTGATGAAGAAGAGCAATGCCGTAGGAGAAGTCGACACCAAAGGCTTCCATGTCTATCCCATACCCACATCAAAAGATTTGACGATAGAGATACCGGCAGAAATGGTAGGCAAAGTGGCATCTCTTATAGATATGAACGGACAGATTGTTTACAGAGTTACGCTTAATAACATCTTCCAGCAGATAGATATCAGCCATCTCAAGGGCGTTTTCCTCTTGCAGATCGGTGATATTACAGAAAGAGTGATCGTTCAA","4.60","-23.06","53898","MRKIIMKKLFLASVAFLCAWIWSANAQTMAPNYFHADPQQFKHRIVKEKSFSSYSNYEYGVDNRLQRIYSVDESSGEIEHERRFFFNEGGYMIREEEYDGTVQIPVRKWEFVRDDKGYITHFSRYSPKDGSQELIEDIRIDFSYDADMKLIKADIDFFDIMANVWGDLRTTKLVYNENGLLKEMIQTDPGSGQEFNREELTYNNLNKIVAIRFIPGPASTGLNEFELIYEYDSEGMDIVKAGRDDFWYYYEYDKEMLASETFFPKPSIADLVYFGLKDYVDFSGLPFKNSYTHVVVKESTNEVEAIYEPISVYSVVVIQPENGEIKLTADGQPLNSGSTLVAGRRIKIHPIPAEGYEVDKVMVNGENIEAPYEFLLEKDTEVTALMKKSNAVGEVDTKGFHVYPIPTSKDLTIEIPAEMVGKVASLIDMNGQIVYRVTLNNIFQQIDISHLKGVFLLQIGDITERVIVQ","535588 536994","TIGR ID: PG0495","conserved hypothetical protein","Cytoplasm, Periplasm, Inner membrane","This sequence corresponds to gi:34396623 in Genbank.","
noIPR
unintegrated
unintegrated
signalp\"[1-26]?signal-peptide
tmhmm\"[9-24]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Mar 3 10:12:50 2005","Thu Mar 3 10:12:50 2005","Sat Feb 24 20:18:02 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 395 to 469 share 34% identity with PG1208.","Sat Feb 24 20:18:02 MST 2001","Sat Feb 24 20:18:02 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Apr 2 14:07:46 MDT 2001","34540311","Mon Apr 2 14:07:46 MDT 2001","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Thu Mar 3 10:12:50 2005","","1","","","PG0495" "PG0453","537398","538081","684","ATGAACAAGACTATCGGTGTGGTAGTAGCCATGGAGAAAGAGTTTCGCCTGCTACCGGACATCCTCGAAAACAAGGAAGAAATACGGGATGCGGTTTTCCGTGCCGTTGTCGGAATTGTCGGAGGACATCGCGTCATATATGCCCTGAGCGGAATAGGGAAGGTGGCTGCCGCTGTCTGTGCCGGAGAACTGATCTGCCGCTATCGTCCCGACTACCTCATCAATATAGGCGTGAGCGGAGGATTGGGGCGGAATGTCGCTATCCATGATACGGTAGTGTCCACGGCTGTCTGCTATCACGATGTTTCGTGCGGAGCCGATATTGCTTGGGGGCAGGTGCAGGGTTTTCCCCTTTATTATCCCGTTTCGGAGGATCTTCTCGCCCTTTTTCGTTCGCTTCCGGTACCTGTCCGAGAGGGTGTGGTCTGTTGTGGCGATCGTTTCTTGTCGTCATCGGAGGAGCAGGACTTTGTTCGTCGTACTTTTCCCGATGCCGTTGCCGTGGATATGGAGTCTGCTGCGTTGGCTCAGGTGGCATATATATACAGAGTCCCGTTCATCGCCGTGCGTATTATCAGCGATATTGCCGGCGAAGGTCGGGATAACTTTGCGGAGTATATGGACTTCTGGCGCAAGGCTTCTCCGGCTACCTTTTCTATTCTCGAAAGAGTATTCGATGCAATG","4.90","-6.56","25021","MNKTIGVVVAMEKEFRLLPDILENKEEIRDAVFRAVVGIVGGHRVIYALSGIGKVAAAVCAGELICRYRPDYLINIGVSGGLGRNVAIHDTVVSTAVCYHDVSCGADIAWGQVQGFPLYYPVSEDLLALFRSLPVPVREGVVCCGDRFLSSSEEQDFVRRTFPDAVAVDMESAALAQVAYIYRVPFIAVRIISDIAGEGRDNFAEYMDFWRKASPATFSILERVFDAM","537398 538081","TIGR ID: PG0497","mta/sah nucleosidase (phosphorylase-PFS protein)","Cytoplasm, Periplasm","Residues 5 to 216 share 36% identity with gb|AAF95522.1| (AE004308) MTA/SAH nucleosidase in Vibrio cholerae.Residues 3 to 207 share 39% identity with emb|CAB84248.1| (AL162754) putative 5'-methylthioadenosine/S-adenosylhomocysteinenucleosidase in Neisseria meningitidis Z2491.Residues 5 to 216 share 33% identity with gb|AAC22869.1| (U32801) pfs protein (pfs) in Haemophilus influenzae Rd.Region shares identity with other 5-methylthioadenosine nucleosidases in additional bacterial genera.","
InterPro
IPR000845
Family
Nucleoside phosphorylase
PF01048\"[4-225]TPNP_UDP_1
InterPro
IPR010049
Family
MTA/SAH nucleosidase
TIGR01704\"[4-228]TMTA/SAH-Nsdase
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.1580\"[4-228]TG3DSA:3.40.50.1580
PTHR21234\"[5-228]TPTHR21234
PTHR21234:SF6\"[5-228]TPTHR21234:SF6
SSF53167\"[4-228]TSSF53167


","BeTs to 8 clades of COG0775COG name: Nucleoside phosphorylaseFunctional Class: FThe phylogenetic pattern of COG0775 is ------vcEbRhuj--OliN-Number of proteins in this genome belonging to this COG is 2","***** BP04885 (PROTEIN NUCLEOSIDASE STORAGE PFS 5'-METHYLTHIOA) with a combined E-value of 3e-26. BP04885A 47-65 BP04885B 73-107 BP04885C 139-152 BP04885D 167-194***** IPB000845 (Purine and other phosphorylases, family 1) with a combined E-value of 1.5e-13. IPB000845B 36-64 IPB000845C 69-93 IPB000845D 139-149 IPB000845E 164-195","Residues 28-205 are 27% similar to a (PHOSPHORYLASE TRANSFERASE) protein domain (PD003928) which is seen in DEOD_LACLC.Residues 5-129 are 40% similar to a (PROTEIN PFS MTA/SAH NUCLEOSIDASE) protein domain (PD004885) which is seen in PFS_BACSU.Residues 140-189 are 44% similar to a (PROTEIN PFS MTA/SAH NUCLEOSIDASE) protein domain (PD005987) which is seen in O50162_BORBU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Sat Feb 24 20:12:53 MST 2001","Mon Apr 30 13:15:36 MDT 2001","Mon Apr 30 13:15:36 MDT 2001","Mon Apr 30 13:15:36 MDT 2001","Sat Feb 24 20:12:53 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Sat Feb 24 20:12:53 MST 2001","-54% similar to PDB:1JYS Crystal Structure of E. coli MTA/AdoHcy Nucleosidase (E_value = 1.1E_28);-54% similar to PDB:1NC1 Crystal structure of E. coli MTA/AdoHcy nucleosidase complexed with 5'-methylthiotubercidin (MTH) (E_value = 1.1E_28);-54% similar to PDB:1NC3 Crystal structure of E. coli MTA/AdoHcy nucleosidase complexed with formycin A (FMA) (E_value = 1.1E_28);-54% similar to PDB:1Y6Q Cyrstal structure of MTA/AdoHcy nucleosidase complexed with MT-DADMe-ImmA (E_value = 1.1E_28);-54% similar to PDB:1Y6R Crystal structure of MTA/AdoHcy nucleosidase complexed with MT-ImmA. (E_value = 1.1E_28);","","","Residues 4 to 225 (E-value = 5.7e-41) place PG0453 in the PNP_UDP_1 family which is described as Phosphorylase family (PF01048)","Mon Apr 30 13:15:36 MDT 2001","34540313","","","","","","1","","","PG0497" "PG0454","538103","538585","483","ATGGAGATGGAAAAAATTCCCAGTTTTCAGTTAGATCATATTCGCCTCAAACGAGGCATATATGTCTCCCGCAAGGACTATATAGGGGGAGAGGTGGTTACGACTTTCGATATTCGAATGAAAGAGCCCAATCGCGAACCGGTGCTTGGGGCACCCGAACTGCATACGATCGAGCATTTGGCTGCAACTTATCTGCGTAATCATCCGCTTTATAAGGACAGGATCGTTTTCTGGGGGCCGATGGGCTGCCTTACGGGCAATTACTTTCTGATGCGAGGCGATTACGTATCCAAAGATATACTGCCCCTCATGCAGGAGACTTTCCGCTTCATCAGAGACTTCGAAGGAGAAGTGCCGGGTACGGAGCCGCGCGACTGTGGCAACTGCCTGCTGCACAACCTGCCGATGGCCAAATATGAGGCCGAGAAATACCTGCGTGAGGTACTCGATGTAGCGACGGAGGAGAACCTGAACTATCCCGAC","5.40","-4.93","18799","MEMEKIPSFQLDHIRLKRGIYVSRKDYIGGEVVTTFDIRMKEPNREPVLGAPELHTIEHLAATYLRNHPLYKDRIVFWGPMGCLTGNYFLMRGDYVSKDILPLMQETFRFIRDFEGEVPGTEPRDCGNCLLHNLPMAKYEAEKYLREVLDVATEENLNYPD","538103 538585","Frias et al. (2001) report that Prevotella intermedia, Fusobacterium nucleatum, and Porphyromonas gingivalis possess this autoinducer activity and that E.coli DH5alpha can be complemented by this function in P.gingivalis.TIGR ID: PG0498","autoinducer AI2 protein","Cytoplasm","Residues 2 to 160 share 49% identity with gb|AAC66762.1| (AE001143), a conserved hypothetical protein in Borrelia burgdorferi.Residues 3 to 160 share 50% identity with sp|Q9ZMW8|LUXS_HELPJ, an autoinducer-2 production protein LuxS (AI-2 SYNTHESIS PROTEIN) in H. pylori.Residues 3 to 145 share 34% identity with dbj|BAA81641.1| (AB028629), LuxS hypothetical protein in Clostridium perfringens.","
InterPro
IPR003815
Family
LuxS protein
PD013172\"[11-151]TQ7MWT9_PORGI_Q7MWT9;
PR01487\"[7-25]T\"[50-68]T\"[77-95]T\"[119-138]TLUXSPROTEIN
PIRSF006160\"[3-160]TAutoinducer-2 production protein LuxS
PF02664\"[4-160]TLuxS
noIPR
unintegrated
unintegrated
G3DSA:3.30.1360.80\"[3-161]Tno description


","BeTs to 4 clades of COG1854COG name: LuxS protein involved in autoinducer AI2 synthesisFunctional Class: TThe phylogenetic pattern of COG1854 is --------eb-huj--o----Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 6-145 are 50% similar to a (PROTEIN CONSERVED PUTATIVE YTJB) protein domain (PD013172) which is seen in O50164_BORBU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Sat Jun 2 15:03:00 MDT 2001","Sat Feb 24 20:05:58 MST 2001","Sat Feb 24 20:05:58 MST 2001","Mon Apr 30 13:19:17 MDT 2001","","Sat Feb 24 20:05:58 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Sat Feb 24 20:05:58 MST 2001","-54% similar to PDB:1J6X CRYSTAL STRUCTURE OF HELICOBACTER PYLORI LUXS (E_value = 7.9E_18);-51% similar to PDB:1INN CRYSTAL STRUCTURE OF D. RADIODURANS LUXS, P21 (E_value = 3.1E_14);-51% similar to PDB:1J6V CRYSTAL STRUCTURE OF D. RADIODURANS LUXS, C2 (E_value = 3.1E_14);-51% similar to PDB:1VGX Crystal structure of a autoinducer-2 synthesis protein (E_value = 3.1E_14);-51% similar to PDB:1VH2 Crystal structure of a autoinducer-2 synthesis protein (E_value = 3.1E_14);","","","Residues 4 to 160 (E-value = 2.2e-49) place PG0454 in the LuxS family which is described as LuxS protein (PF02664)","Mon Apr 30 13:19:17 MDT 2001","34540314","","Frias J, Olle E, Alsina M.Periodontal pathogens produce quorum sensing signal molecules.Infect Immun. 2001 May;69(5):3431-4.PMID: 11292769 ","Surette,M.G. and Bassler,B.L.Quorum sensing in Escherichia coli and Salmonella typhimurium. Proc. Natl. Acad. Sci. U.S.A. 95 (12), 7046-7050 (1998).M: 98284055Surette,M.G., Miller,M.B. and Bassler,B.L.Quorum sensing in Escherichia coli, Salmonella typhimurium, andVibrio harveyi: a new family of genes responsible for autoinducerproduction. Proc. Natl. Acad. Sci. U.S.A. 96 (4), 1639-1644 (1999)M:99145603","Sat Jun 2 15:06:41 MDT 2001","Sat Jun 2 15:06:41 MDT 2001","1","","","PG0498" "PG0455","538850","539200","351","TTGGTTTTGCGGCTTCATTCGAGCAAATTTCTCCTCATTGGTATTATTGGCTGCTATTGTGTGCCGATGGCAGCCGGATGGATTATTGGAGCCGGAGGCGGTATCGGCTCGTATGGACGCAATGTGAATCAGACGGCACAGCGTGGCGCACAAGGTGCATACACGGGGAGCAAGGCGATGGTTGGAGAAGCACAAGTGCTGTTGCCGGTCATGTCGTTTGATGTCTCAAAGGGTCACTCATTAAAGGGGAGTAGATTTCCACTTGTGGAAATCCGGCATGTACCAAATAGTCGCCTGACACACAATAAGAAGAATAAACAAAAGTGCCTGCTTGTTGTGCAAAGGTCCCAT","11.20","13.03","12566","LVLRLHSSKFLLIGIIGCYCVPMAAGWIIGAGGGIGSYGRNVNQTAQRGAQGAYTGSKAMVGEAQVLLPVMSFDVSKGHSLKGSRFPLVEIRHVPNSRLTHNKKNKQKCLLVVQRSH","538850 539200","TIGR ID: PG0499","hypothetical protein","Periplasm, Extracellular","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR012424
Family
Homologues of TraJ from Bacteroides conjugative transposon
PF07863\"[10-84]TCtnDOT_TraJ
noIPR
unintegrated
unintegrated
signalp\"[1-26]?signal-peptide
tmhmm\"[10-30]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Feb 20 10:35:12 MST 2001","","Tue Feb 20 10:35:12 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","PG0455 is paralogous to six hypothetical proteins:residues 1-117 share 94% identity with PG1941.1,residues 1-117 share 85% identity with PG1105.2,residues 9-117 share 75% identity and a 23 residue gap to PG1563,residues 1-90 share 86% identity to PG0941,residues 20-117 share 68% identity and a 22 residue gap with PG0787.1,residues 1-88 share 845 identity with PG1198.","Mon Apr 2 14:19:28 MDT 2001","Tue Feb 20 10:35:12 MST 2001","-44% similar to PDB:1CPC ISOLATION, CRYSTALLIZATION, CRYSTAL STRUCTURE ANALYSIS AND REFINEMENT OF CONSTITUTIVE C-PHYCOCYANIN FROM THE CHROMATICALLY ADAPTING CYANOBACTERIUM FREMYELLA DIPLOSIPHON AT 1.66 ANGSTROMS RESOLUTION (E_value = );-58% similar to PDB:1TE6 Crystal Structure of Human Neuron Specific Enolase at 1.8 angstrom (E_value = );-58% similar to PDB:2AKM Fluoride Inhibition of Enolase: Crystal Structure of the Inhibitory Complex (E_value = );-58% similar to PDB:2AKZ Fluoride Inhibition of Enolase: Crystal Structure of the Inhibitory Complex (E_value = );-55% similar to PDB:1Q7H Structure of a conserved hypothetical protein from T. acidophilum (E_value = );","","","No significant hits to the Pfam 11.0 database","Mon Apr 2 14:19:28 MDT 2001","34540315","","","","","","1","","","PG0499" "PG0456","539338","540465","1128","ATGACATTCGATCTTCAATATACATGTGCCGACTGCGAAGCGCGTGCCGGTCTGCTGACTACAGACCATGGCCCCATAGAGACTCCCATCTTCATGCCGGTAGGCACGGTCGGGAGCGTGAAGGCCGTACACATGCACGAGTTGGAAGAGGATATTCGGGCTCAGATTATACTCGGCAATACTTATCACCTCTATCTCCGTCCCGGATTGGATGTGCTCAAGCGTGCCGGAGGCTTGCACAAGTTCAATAGCTGGGAGCGGCCTTTGCTCACGGATAGCGGAGGTTTTCAGGTGTTCTCTTTGGCGGAGAATCGGAAGATCACAGAGGAGGGTGCGACTTTCCGTTCCCATATAGACGGCTCCAAGCACCTTTTTTCACCCGAAAGGGTCATGGACATCCAGCGCGTTATCGGAGCGGACATCATCATGGCTTTCGATGAATGTTGCCCCGGTGATGCCGACCGCGAATATGCACGCCGTTCGATGCTCCTGACCGGAAGGTGGTTGGAGCGTTGCCTGTGTAGAATGCGCGAGACGGAGCCACTCTATGGATATGAACAGCAGCTATTCCCCATCGTGCAGGGATGCATCTATCCCGATCTGCGCCGCCGGTCGGCCGAGATGGTAGCTGCCGTCGATGCTGCCGGAAATGCCATCGGAGGATTGGCCGTGGGAGAACCGACGGAAAAGATGTACGAGATGATCGAACTGACCAACGAGATCCTTCCCAAAGATCGTCCGCGCTACCTCATGGGGGTAGGTACTCCGATCAATATATTGGAAGCGATAGACCGTGGTGTGGACATGTTCGACTGCATCATGCCTACGCGCAACGGCCGTAATGGGCAGCTCTTTACCTGGCACGGTACCATCAATATCCGCAATGCCAAATGGGCGGACGACTACTCGCCGCTCGATCCTGACGGTACATCGTACGTGGACAGCCGCTACAGCAAGGCCTATCTGCACCACTTGATCCATACACAGGAGATTCTCGGTCTGCAAATCGCCTCTATTCACAACCTCGCCTTCTATCTCGAGCTGGTCCGACAAGCGCGTAAGCATATTCAAATCGGCGACTATCGCACTTGGAAAACGGCTATGATCCGACAGCTTGACAACAGGCTG","6.30","-5.22","42767","MTFDLQYTCADCEARAGLLTTDHGPIETPIFMPVGTVGSVKAVHMHELEEDIRAQIILGNTYHLYLRPGLDVLKRAGGLHKFNSWERPLLTDSGGFQVFSLAENRKITEEGATFRSHIDGSKHLFSPERVMDIQRVIGADIIMAFDECCPGDADREYARRSMLLTGRWLERCLCRMRETEPLYGYEQQLFPIVQGCIYPDLRRRSAEMVAAVDAAGNAIGGLAVGEPTEKMYEMIELTNEILPKDRPRYLMGVGTPINILEAIDRGVDMFDCIMPTRNGRNGQLFTWHGTINIRNAKWADDYSPLDPDGTSYVDSRYSKAYLHHLIHTQEILGLQIASIHNLAFYLELVRQARKHIQIGDYRTWKTAMIRQLDNRL","539338 540465","TIGR ID: PG0500","tRNA-guanine transglycosylase (queuine tRNA ribosyltransferase)","Cytoplasm","This sequence is similar to CT193 and to BT0835.Numerous significant hits in gapped BLAST to tRNA-guanine transglycosylase/queuine tRNA-ribosyltransferases; e.g. residues 3-376 are 48% similar to AE000733 of Aquifex aeolicus, residues 1-357 are 51% similar to AP003134 of Staphylococcus aureus, residues 11-365 are 51% similar to AL162754 of Neisseria meningitidis.","
InterPro
IPR002616
Family
Queuine/other tRNA-ribosyltransferase
G3DSA:3.20.20.105\"[3-372]TtRNA_ribo_trans
PTHR11962\"[19-374]TtRNA_ribo_trans
PF01702\"[128-370]TTGT
TIGR00449\"[3-374]Ttgt_general
InterPro
IPR004803
Family
Queuine tRNA-ribosyltransferase
TIGR00430\"[3-367]TQ_tRNA_tgt
noIPR
unintegrated
unintegrated
SSF51713\"[1-373]TSSF51713


","BeTs to 13 clades of COG0343COG name: Queuine/archaeosine tRNA-ribosyltransferaseFunctional Class: JThe phylogenetic pattern of COG0343 is AmTk-qvceb-huj--o-inxNumber of proteins in this genome belonging to this COG is 1","***** PF01702 (Queuine tRNA-ribosyltransferase) with a combined E-value of 6.8e-118. PF01702A 23-36 PF01702B 62-102 PF01702C 127-167 PF01702D 189-222 PF01702E 242-282 PF01702F 317-368","Residues 128-362 are 47% similar to a (TRANSFERASE QUEUINE) protein domain (PD004261) which is seen in TGT_BACSU.Residues 3-101 are 61% similar to a (TRANSFERASE QUEUINE) protein domain (PD004830) which is seen in O67331_AQUAE.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Apr 17 12:51:06 MDT 2001","Wed Dec 3 09:37:19 2003","Tue Apr 17 12:51:06 MDT 2001","Tue Apr 17 12:51:06 MDT 2001","Tue Apr 17 12:51:06 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Jul 23 19:04:36 2008","-66% similar to PDB:1OZM Y106F mutant of Z. mobilis TGT (E_value = 6.5E_94);-66% similar to PDB:1OZQ CRYSTAL STRUCTURE OF THE MUTATED TRNA-GUANINE TRANSGLYCOSYLASE (TGT)Y106F COMPLEXED WITH PREQ1 (E_value = 6.5E_94);-66% similar to PDB:1ENU A new target for shigellosis: Rational design and crystallographic studies of inhibitors of tRNA-guanine transglycosylase (E_value = 1.4E_93);-66% similar to PDB:1F3E A NEW TARGET FOR SHIGELLOSIS: RATIONAL DESIGN AND CRYSTALLOGRAPHIC STUDIES OF INHIBITORS OF TRNA-GUANINE TRANSGLYCOSYLASE (E_value = 1.4E_93);-66% similar to PDB:1K4G CRYSTAL STRUCTURE OF TRNA-GUANINE TRANSGLYCOSYLASE (TGT) COMPLEXED WITH 2,6-DIAMINO-8-(1H-IMIDAZOL-2-YLSULFANYLMETHYL)-3H-QUINAZOLINE-4-ONE (E_value = 1.4E_93);","","","Residues 128 to 370 (E-value = 2e-104) place PG0456 in the TGT family which is described as Queuine tRNA-ribosyltransferase (PF01702)","Tue Apr 17 12:51:06 MDT 2001","34540316","","","","","","1","","","PG0500" "PG0457","540485","541564","1080","ATGAAGAGGTTGAACAGGTTAGATAAGTATTTGATCAAGCAGTTTTTGGGGACGTTCGTCTTCTCCATCATCTTGATCATATCCGTTTCGGTCGTCTTCGACATCAATGAGAAGATCGATGACTTTATGAAGCCGGAGGTCAGTCTGCGCAGTATCATATTCGATTACTATTTCAACTTCGTTCCCTACTACGCCAATCTTTTCAGCCCGCTCTTCGTCTTCATATCGGTTATATTCTTTACGTCGAAGCTGGCTGAGAAGTCCGAGATCATCGCGATGCTTTCGGCCGGAGTCAGTTTCAAGCGGCTGATGGTGCCCTATATGTTGTCGGCAACGGTGATTGCCATACTGACTTTCCTGCTCAATAGTTTCGTTATCCCACCGGGCAATGCTACACGAATTGATTTTCAGAACAAATACATCAAGAACAAGAAGGTACAGTATGCCGAGAGCGTTCAGCTCGAAGTGAAGAAAGGGGTCTTTGCCTTTTTCGGATCGTACAGCGATGCCATGCGAACCGGTTACCAGTTCAGCCTGGAAGAGTTCAAGGGCAAGCAGCTCGTCTCCCGTCTGACAGCGGATAGGATCCAATACGACTCGCTTTATAACTGGCGCATTTTCAACTACAGGATCAGGCACTTCGGTAAGTATAAAGAGACGGTCGAGAGCGGTAGCGAGATGGACACGGTAATAGCCGTCCGCCCGGCGGACTTCCTCGTGGCAGAGGATGATGTGGAGACGATGACGACTACCGACCTGCATACCTATATATCGCATCAGAAGCAAAGGGGCGTGGGCAACGTCAAGCTCTTTGAGATCGAACTGCACAAACGCTATGCAGCCATCTTCTCTGCCTTTATCCTCACCATTATCGGTGCTTCGCTCTCTTCACGCAAAGTAAAAGGAGGGATGGGGATCAATATCGCTATCGGTCTGGGGCTTAGCTTTGCCTATATCCTGTTTATGACCGTTGCCGGTACATTTGCCATCAGCGGATCTTTGCCTCCGTTTATGGCAGCTTGGTTGCCTAACTTCGTGTTTACGGTCATTGCCGTTTCCCTTTATAAAAAAGCTCCGCGA","10.30","11.97","40975","MKRLNRLDKYLIKQFLGTFVFSIILIISVSVVFDINEKIDDFMKPEVSLRSIIFDYYFNFVPYYANLFSPLFVFISVIFFTSKLAEKSEIIAMLSAGVSFKRLMVPYMLSATVIAILTFLLNSFVIPPGNATRIDFQNKYIKNKKVQYAESVQLEVKKGVFAFFGSYSDAMRTGYQFSLEEFKGKQLVSRLTADRIQYDSLYNWRIFNYRIRHFGKYKETVESGSEMDTVIAVRPADFLVAEDDVETMTTTDLHTYISHQKQRGVGNVKLFEIELHKRYAAIFSAFILTIIGASLSSRKVKGGMGINIAIGLGLSFAYILFMTVAGTFAISGSLPPFMAAWLPNFVFTVIAVSLYKKAPR","540452 541564","TIGR ID: PG0501","conserved hypothetical protein","Inner membrane, Cytoplasm","Residues 1 to 360 share 24% identity with dbj|BAA17606.1| (D90907), a hypothetical protein in Synechocystis sp.Residues 4 to 355 share 23% identity with gb|AAD36800.1|AE001812_10 (AE001812), a conserved hypothetical protein in Thermotoga maritima.This sequence is similar to BT0834.","
InterPro
IPR005495
Family
Predicted permease YjgP/YjgQ
PF03739\"[9-357]TYjgP_YjgQ


","BeTs to 8 clades of COG0795COG name: Predicted permeasesFunctional Class: RThe phylogenetic pattern of COG0795 is ------vCE--HUJ--OLINxNumber of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","Residues 209-346 are 29% similar to a (PROTEIN) protein domain (PD041472) which is seen in P73566_SYNY3.","","Thu Jun 14 10:44:27 MDT 2001","","Thu Jun 14 10:44:27 MDT 2001","Thu Jun 14 10:44:27 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 10:44:27 MDT 2001","Thu Jun 14 10:44:27 MDT 2001","","","Thu Feb 22 16:31:01 MST 2001","Wed Dec 3 09:35:31 2003","Thu Jun 14 10:44:27 MDT 2001","","Wed Jun 20 13:27:20 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 22 16:31:01 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 9 to 357 (E-value = 2.4e-37) place PG0457 in the YjgP_YjgQ family which is described as Predicted permease YjgP/YjgQ family (PF03739)","Wed Jun 20 13:27:20 MDT 2001","34540317","","","","","","1","","","PG0501" "PG0458","541600","542058","459","ATGAAAGAGAAAATACAGAAGAATATCCTCATAAAGAACAAACGTGCCACTTTCGATTACGAGATTTTGGACGTTTACACGGCGGGCATTGTATTGGTCGGTACCGAGATCAAATCGCTCCGACTGGGCAAAGGCGGTTTGGTTGATACCTATTGCTACTTCCATCGGGGAGAGCTGTGGGTGAAGAATATGTACATAGCCGAATACTTCTATGGCACCTATAACAACCATGTGGCTCGCCGCGACCGTAAACTCCTCCTTAATCGCAAAGAGCTACGCAAGCTTGAGGAGGCATCCAAGAGCATGGGTACCACGATAGTGCCGCTCAAGCTCTTTATCAATGAAAGGGGATTGGCCAAGCTGCAAATCGGATTGGCACGAGGGAAAAAACAATATGACAAACGTGCATCCATCAAAGAGCGAGATGATCGCCGAGAGATGGATCGTGCATTGAAACGC","10.80","16.43","18002","MKEKIQKNILIKNKRATFDYEILDVYTAGIVLVGTEIKSLRLGKGGLVDTYCYFHRGELWVKNMYIAEYFYGTYNNHVARRDRKLLLNRKELRKLEEASKSMGTTIVPLKLFINERGLAKLQIGLARGKKQYDKRASIKERDDRREMDRALKR","541600 542058","TIGR ID: PG0502","small protein B (SMPB)","Cytoplasm","This sequence is similar to CT076, a predicted small protein B. Numerous significant hits in gapped BLAST to small protein B/SSRA-binding protein; e.g. residues 2-151 are 51% similar to AL138851 of Streptomyces coelicolor, residues 9-152 are 48% similar to P56944 (gi: 4980740) of Thermotoga maritima, residues 12-152 are 47% similar to AP003012 of Mesorhizobium loti.","
InterPro
IPR000037
Family
SmpB protein
PD004488\"[13-134]TSmpB
PF01668\"[8-75]TSmpB
TIGR00086\"[9-152]TsmpB
PS01317\"[28-40]TSSRP
noIPR
unintegrated
unintegrated
G3DSA:2.40.280.10\"[2-131]TG3DSA:2.40.280.10
SSF74982\"[2-134]TSSF74982


","BeTs to 12 clades of COG0691COG name: tmRNA-binding protein SmpBFunctional Class: OThe phylogenetic pattern of COG0691 is -----qvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB000037 (SmpB protein) with a combined E-value of 4.8e-44. IPB000037A 13-61 IPB000037B 106-146","Residues 99-152 are 55% similar to a (SMALL PROTEIN B HOMOLOG) protein domain (PD004792) which is seen in SMPB_ENTFA.Residues 9-73 are 43% similar to a (SMALL PROTEIN B HOMOLOG) protein domain (PD004488) which is seen in SMPB_MYCLE.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Mar 22 11:53:27 MST 2000","Wed Jun 6 14:58:30 MDT 2001","Wed Jun 6 14:58:30 MDT 2001","Wed Jun 6 14:58:30 MDT 2001","Wed Jun 6 14:58:30 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Jun 6 14:58:30 MDT 2001","-59% similar to PDB:1J1H Solution structure of a tmRNA-binding protein, SmpB, from Thermus thermophilus (E_value = 5.5E_26);-59% similar to PDB:1WJX Crystal sturucture of TT0801 from Thermus thermophilus (E_value = 3.7E_22);-59% similar to PDB:2CZJ Crystal structure of the tRNA domain of tmRNA from Thermus thermophilus HB8 (E_value = 3.7E_22);-53% similar to PDB:1P6V Crystal structure of the tRNA domain of transfer-messenger RNA in complex with SmpB (E_value = 2.0E_20);-53% similar to PDB:2OB7 Structure of tmRNA-(SmpB)2 complex as inferred from cryo-EM (E_value = 2.0E_20);","","","Residues 8 to 75 (E-value = 1.9e-23) place PG0458 in the SmpB family which is described as SmpB protein (PF01668)","Wed Jun 6 14:58:30 MDT 2001","34540318","","","","","","1","","","PG0502" "PG0459","542101","544269","2169","ATGAAAAGACCGGTAATAATTCTGCTACTTGGCATCGTAACCATGTGTGCCATGGCTCAGACGGGGAACAAACCCGTAGATTTGAAAGAAATCACGAGCGGAATGTTTTATGCTCGCAGTGCAGGGAGTGGAATACGCTCCATGCCGGATGGAGAACACTATACGGAGATGAACCGTGAGCGAACGGCTATCATTCGCTACAATTATGCCTCCGGCAAGGCGGTAGATACGCTCTTCAGTGTCGAACGAGCACGCGAATGCCCGTTTAAACAAATACAGAACTACGAGGTAAGCAGTACCGGACATCATATTTTGCTCTTTACGGATATGGAGAGCATCTATCGGCATTCGTATCGTGCTGCCGTCTACGACTATGATGTTCGCCGCAATTTGGTAAAACCACTGAGCGAGCATGTCGGCAAAGTGATGATCCCTACATTCAGCCCCGATGGCCGGATGGTAGCGTTCGTCAGAGACAATAACATCTTTATCAAGAAATTCGATTTCGACACGGAAGTACAGGTTACTACCGATGGGCAGATCAACTCTATTCTTAACGGAGCGACGGATTGGGTGTACGAAGAAGAGTTCGGTGTGACCAATCTGATGAGCTGGAGTGCGGACAATGCTTTTCTGGCTTTTGTGCGCAGCGATGAATCTGCCGTCCCCGAATATCGAATGCCTATGTATGAGGACAAACTTTATCCCGAAGACTATACCTATAAGTATCCCAAGGCAGGGGAGAAGAATAGTACCGTCTCCCTGCATCTCTATAATGTGGCGGATCGGAATACCAAGTCGGTAAGCCTGCCGATCGATGCGGATGGATATATTCCCCGAATTGCTTTCACGGACAACGCGGATGAGTTGGCTGTCATGACACTCAACCGTTTGCAGAACGACTTCAAAATGTACTATGTGCATCCGAAGAGTCTCGTCCCCAAGCTGATACTACAGGATATGAACAAGCGATATGTGGATAGCGATTGGATTCAGACCTTGAAGTTTACGACCGGAGGTGGATTCGCCTATGTGAGCGAAAAGGATGGGTTTGCCCATATCTATCTCTACGATAATAAGGGGGTAATGCACCGTCGGATTACCTCAGGAAATTGGGATGTGACCAAACTGTACGGAGTGGATGCTTCGGGAACGGTCTTCTACCAGTCGGCGGAAGAAAGCCCCATCCGTCGAGCTGTCTATGCCATAGATGCCAAAGGCAGGAAAACAAAGCTCAGCCTGAATGTAGGCACGAATGATGCTCTCTTTAGTGGCAATTATGCATACTATATTAACACGTATAGCAGTGCTGCTACCCCAGCGGTGGTTTCGGTATTCAGAAGCAAAGGTGCCAAAGAGCTGCGTACACTGGAGGATAACGTTGCTCTCCGTGAACGGCTGAAAGCCTATCGTTACAACCCGAAGGAGTTTACCACTATCAAAACTCAATCGGGTCTTGAACTGAATGCCTGGATCGTGAAGCCTATTGATTTCGATCCCTCTCGCCACTATCCTGTCCTGATGGTACAGTATAGCGGTCCCAACTCCCAGCAGGTATTGGATCGCTATTCATTCGATTGGGAACACTACCTTGCATCGAAAGGTTACGTCGTGGCATGTGTGGATGGGCGTGGCACCGGTGCTCGCGGCGAAGAATGGCGCAAGTGTACCTACATGCAACTCGGTGTATTCGAAAGCGATGATCAGATAGCAGCGGCCACTGCTATAGGACAGCTGCCCTATGTGGATGCAGCTCGTATCGGCATATGGGGGTGGAGCTATGGCGGCTATACCACACTAATGAGTTTGTGTCGGGGAAATGGTACATTCAAAGCGGGGATAGCCGTTGCTCCTGTGGCAGACTGGCGTTTCTACGATTCGGTTTACACCGAACGCTTCATGCGTACACCCAAGGAGAATGCTTCCGGATACAAGATGTCTTCTGCTCTTGATGTGGCAAGCCAATTACAAGGAAACCTCTTGATCGTAAGCGGATCGGCAGACGACAATGTTCATCTTCAGAACACGATGCTTTTTACAGAGGCACTGGTTCAGGCCAATATCCCCTTCGACATGGCTATCTATATGGACAAGAACCATAGTATATACGGGGGGAATACCCGCTATCATCTCTATACTCGCAAAGCAAAGTTTTTGTTCGACAATCTT","7.40","2.19","81934","MKRPVIILLLGIVTMCAMAQTGNKPVDLKEITSGMFYARSAGSGIRSMPDGEHYTEMNRERTAIIRYNYASGKAVDTLFSVERARECPFKQIQNYEVSSTGHHILLFTDMESIYRHSYRAAVYDYDVRRNLVKPLSEHVGKVMIPTFSPDGRMVAFVRDNNIFIKKFDFDTEVQVTTDGQINSILNGATDWVYEEEFGVTNLMSWSADNAFLAFVRSDESAVPEYRMPMYEDKLYPEDYTYKYPKAGEKNSTVSLHLYNVADRNTKSVSLPIDADGYIPRIAFTDNADELAVMTLNRLQNDFKMYYVHPKSLVPKLILQDMNKRYVDSDWIQTLKFTTGGGFAYVSEKDGFAHIYLYDNKGVMHRRITSGNWDVTKLYGVDASGTVFYQSAEESPIRRAVYAIDAKGRKTKLSLNVGTNDALFSGNYAYYINTYSSAATPAVVSVFRSKGAKELRTLEDNVALRERLKAYRYNPKEFTTIKTQSGLELNAWIVKPIDFDPSRHYPVLMVQYSGPNSQQVLDRYSFDWEHYLASKGYVVACVDGRGTGARGEEWRKCTYMQLGVFESDDQIAAATAIGQLPYVDAARIGIWGWSYGGYTTLMSLCRGNGTFKAGIAVAPVADWRFYDSVYTERFMRTPKENASGYKMSSALDVASQLQGNLLIVSGSADDNVHLQNTMLFTEALVQANIPFDMAIYMDKNHSIYGGNTRYHLYTRKAKFLFDNL","542101 544269","TIGR ID: PG0503","dipeptidyl peptidase IV (DPP IV) N-terminal region","Outer membrane, Cytoplasm, Extracellular","Shares very strong similarity with a large number of bacterial dipeptidyl peptidase IV genes:100% identical to dbj|BAA28265.1| (AB008194), a DPP IV previously reported in Porphyromonas gingivalis.98% identical to gb|AAC46184.1| (AF026511, a) dipeptidyl peptidase IV previously reported in Porphyromonas gingivalis.This sequence is similar to BT4193.","
InterPro
IPR001375
Domain
Peptidase S9, prolyl oligopeptidase active site region
PF00326\"[523-723]TPeptidase_S9
InterPro
IPR002469
Domain
Peptidase S9B, dipeptidylpeptidase IV N-terminal
PF00930\"[98-441]TDPPIV_N
noIPR
unintegrated
unintegrated
G3DSA:2.140.10.30\"[22-471]TG3DSA:2.140.10.30
G3DSA:3.40.50.1820\"[473-723]TG3DSA:3.40.50.1820
PTHR11731\"[77-723]TPTHR11731
PTHR11731:SF16\"[77-723]TPTHR11731:SF16
SSF53474\"[473-723]TSSF53474
SSF82171\"[22-471]TSSF82171


","BeTs to 4 clades of COG1506COG name: Dipeptidyl aminopeptidases/acylaminoacyl-peptidasesFunctional Class: EThe phylogenetic pattern of COG1506 is ---KY--c-b-----------Number of proteins in this genome belonging to this COG is 5","***** PF00930 (Dipeptidyl peptidase IV (DPP IV) N-terminal region) with a combined E-value of 2.6e-102. PF00930A 95-116 PF00930B 174-224 PF00930C 235-261 PF00930D 276-308 PF00930E 367-377 PF00930F 414-459 PF00930G 495-532 PF00930H 532-574 PF00930I 610-637 PF00930J 659-679***** IPB002471 (Prolyl endopeptidase family serine active site) with a combined E-value of 2.3e-12. IPB002471B 568-598","Residues 591-714 are identical to a (DIPEPTIDYL HYDROLASE PROTEIN IV PEPTIDASE PROTEASE) protein domain (PD003048) which is seen in O66223_PORGI.Residues 91-380 are identical to a (DIPEPTIDYL IV HYDROLASE PROTEASE) protein domain (PD003086) which is seen in O66223_PORGI.Residues 1-90 are identical to a (IV DIPEPTIDYL PEPTIDASE DPP) protein domain (PD152979) which is seen in O66223_PORGI.Residues 384-589 are identical to a (DIPEPTIDYL HYDROLASE IV PROTEIN PEPTIDASE PROTEASE) protein domain (PD001060) which is seen in O66223_PORGI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Feb 22 16:22:58 MST 2001","Mon Jan 5 11:05:35 2004","Wed Mar 14 11:33:44 MST 2001","Thu Feb 22 16:22:58 MST 2001","Thu Feb 22 16:22:58 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 147 to 723 share 31% identity with PG1196.Residues 394 to 700 share 23% identity with PG0652, a dipeptidyl peptidase IV.","Thu Feb 22 16:22:58 MST 2001","Thu Feb 22 16:22:58 MST 2001","-48% similar to PDB:1Z68 Crystal Structure Of Human Fibroblast Activation Protein alpha (E_value = 4.6E_89);-48% similar to PDB:2GBC Native DPP-IV (CD26) from Rat (E_value = 4.5E_84);-48% similar to PDB:2GBF rat dpp-IV with alkynyl cyanopyrrolidine #1 (E_value = 4.5E_84);-48% similar to PDB:2GBG rat DPP-IV with alkynyl cyanopyrrolidine #2 (E_value = 4.5E_84);-48% similar to PDB:2GBI rat DPP-IV with xanthine inhibitor 4 (E_value = 4.5E_84);","","","Residues 26 to 518 (E-value = 6e-233) place PG0459 in the DPPIV_N family which is described as Dipeptidyl peptidase IV (DPP IV) N-terminal region (PF00930)Residues 522 to 598 (E-value = 5.8e-19) place PG0459 in the Peptidase_S9 family which is described as Prolyl oligopeptidase family (PF00326)","Mon Jan 5 11:05:35 2004","34540319","","Kumagai,Y., Konishi,K., Gomi,T., Yagishita,H., Yajima,A. andYoshikawa,M. 2000. Enzymatic properties of dipeptidyl aminopeptidase IV produced by the periodontal pathogen Porphyromonas gingivalis and its participation in virulence. Infect. Immun. 68 (2): 716-724. PubMed: 10639438.Kiyama,M., Hayakawa,M., Shiroza,T., Nakamura,S., Takeuchi,A., Masamoto,Y. and Abiko,Y. 1998. Sequence analysis of the Porphyromonas gingivalis dipeptidyl peptidase IV gene. Biochim. Biophys. Acta 1396 (1): 39-46. PubMed: 9524216.Banbula A, Bugno M, Goldstein J, Yen J, Nelson D, Travis J, Potempa J. Emerging family of proline-specific peptidases of Porphyromonas gingivalis: purification and characterizationof serine dipeptidyl peptidase, a structural and functional homologue of mammalian prolyl dipeptidyl peptidase IV.Nemoto E, Sugawara S, Takada H, Shoji S, Horiuch H.Increase of CD26/dipeptidyl peptidase IV expression on human gingivalfibroblasts upon stimulation with cytokines and bacterial components.Infect Immun. 1999 Dec;67(12):6225-33.PMID: 10569731","","Mon Jan 5 11:05:35 2004","","1","","","PG0503" "PG0460","544375","545220","846","ATGGCGCAACACGTCAAGAAACCCGAATGGTTGAAAATACGTCTTGGTGGGAATGAGAAGTTTACCGAGACTAAAAGCATTGTCGAGGGACATTGTCTGCATACGATCTGTACAAGTGGCAAATGCCCCAATATGGGAGAGTGCTGGAGTAGGGGGACTGCTACCTTCATGATCGGTGGTGATATCTGTACACGTGCCTGTCGATTTTGCAACACTTTGACGGGGCGTCCCAAACCGCTCAATGAAGCAGAACCTACTCACGTCGCATTGAGTATCAAACTGATGGGGCTTAACCATGCTGTGGTGACGAGCGTTGACCGCGATGACTTGCCGGATTATGGTGCCGCACACTGGGTTAAGACCATTCAGGAAATCAGACGGATCAACTCGGGAGTGACACTCGAAGTTCTGATTCCCGACTTCAAAGGACGGATGGATTTGGTGGACATGATTATCGAGGCAAGTCCGGATGTTATTTCGCATAATCTGGAGACGGTACGTCGGCTTACGCCATCGGTACGCAGCGTGGCTACTTACGATACCAGCCTTGCCGTGCTTCGTCACATAGCTCAGTCCGGAAAAATGCCCGCGAAAACAGGAATGATGCTCGGTTTGGGCGAGACTGAAGAAGAGATACTCGAATTGATGGATGATGCTCTTGCGGCGGGAGTCTCAGTTATTACTATAGGACAGTATCTGCAACCGTCGAGGAAGAATCTTCCTGTGGTGGAATACATCACGCCCGAACAGTTCGAACATCTTCGACTGGTGGGTATCGAAAAAGGCTTCCGTACGATAGAGAGTGCTCCGCTCGTTCGCAGTTCTTACCATGCCGAACGGCACTTA","7.10","0.33","31256","MAQHVKKPEWLKIRLGGNEKFTETKSIVEGHCLHTICTSGKCPNMGECWSRGTATFMIGGDICTRACRFCNTLTGRPKPLNEAEPTHVALSIKLMGLNHAVVTSVDRDDLPDYGAAHWVKTIQEIRRINSGVTLEVLIPDFKGRMDLVDMIIEASPDVISHNLETVRRLTPSVRSVATYDTSLAVLRHIAQSGKMPAKTGMMLGLGETEEEILELMDDALAAGVSVITIGQYLQPSRKNLPVVEYITPEQFEHLRLVGIEKGFRTIESAPLVRSSYHAERHL","","The CT558 protein may play a role in sulfurinsertion chemistry as a lipoic acid synthetase.TIGR ID: PG0504","lipoic acid synthetase (lipoate synthase)","Cytoplasm","Numerous significant hits to lipoic acid synthetase (lipoate synthase) proteins in gapped BLAST; e.g. residues 3-282 are 46% similar to dbjBAB07154.1 lipoic acid synthetase of Bacillus halodurans, residues 6-280 are 48% similar to gbAAF10341.1AE001931_12 lipoic acid synthase of Deinococcus radiodurans, residues 5-278 are 45% similar to gbAAK23711.1 lipoic acid synthase of Caulobacter crescentus, residues 1-279 are 43% similar to gbAAF41598.1 lipoic acid synthetase of Neisseria meningitidis MC58.This sequence is similar to BT4192.","
InterPro
IPR003698
Family
Lipoate synthase
PIRSF005963\"[1-282]TLipoyl_synth
PTHR10949\"[5-282]TLipoate_synth
TIGR00510\"[1-282]TlipA
InterPro
IPR006638
Domain
Elongator protein 3/MiaB/NifB
SM00729\"[53-259]TElp3
InterPro
IPR007197
Domain
Radical SAM
PF04055\"[57-219]TRadical_SAM
InterPro
IPR013785
Domain
Aldolase-type TIM barrel
G3DSA:3.20.20.70\"[16-259]TAldolase_TIM
noIPR
unintegrated
unintegrated
SSF102114\"[16-278]TSSF102114


","BeTs to 8 clades of COG0320COG name: Lipoate synthaseFunctional Class: HThe phylogenetic pattern of COG0320 is ----yq-Cebrh------inxNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 62-242 are 44% similar to a (PROTEIN SYNTHETASE SYNTHASE IRON-SULFUR BIOTIN) protein domain (PD003026) which is seen in O32129_BACSU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","Tue Mar 27 13:38:51 MST 2001","Mon Jan 5 11:03:24 2004","Tue Mar 27 13:38:51 MST 2001","Thu Jul 24 13:03:54 2008","Tue Mar 27 13:37:26 MST 2001","","Tue Mar 27 13:37:26 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Jul 24 13:03:54 2008","No significant hits to the PDB database (E-value < E-10).","","","Residues 57 to 219 (E-value = 2.7e-16) place PG0460 in the Radical_SAM family which is described as Radical SAM superfamily (PF04055)","Tue Mar 27 13:37:26 MST 2001","34540320","","","","","","1","","","PG0504" "PG0461","545476","547683","2208","ATGAAAAAGAATTTTAGCAGGATCGTTTCGATCGTAGCATTCTCCTCTCTGTTGGGAGGAATGGCGTTTGCACAGCCGGCAGAGCGCGGTCGCAACCCACAAGTACGACTGCTCTCCGCTGAGCAGTCTATGTCCAAGGTGCAATTCCGTATGGACAATCTTCAGTTCACAGGCGTACAGACCTCCAAAGGGGTAGCTCAGGTGCCTACCTTCACCGAAGGTGTCAATATCTCGGAGAAAGGTACGCCTATATTGCCCATTCTTTCCCGTTCTCTTGCCGTTTCTGAAACACGTGCGATGAAGGTAGAGGTAGTTTCTTCCAAATTCATCGAAAAGAAGGATGTGCTGATCGCTCCCTCTAAAGGTGTTATCTCTCGCGCTGAAAATCCTGATCAAATCCCCTACGTGTACGGACAGAGCTATAATGAAGACAAGTTCTTCCCGGGCGAAATCGCTACGCTGAGCGATCCTTTCATCCTGCGCGATGTACGTGGTCAGGTAGTAAACTTTGCTCCGCTCCAGTATAACCCTGTTACAAAGACCCTCCGCATCTATACGGAAATCGTTGTAGCTGTGAGCGAAACAGCTGAAGCGGGCCAGAATACGATTAGCTTGGTTAAGAACAGTACTTTCACAGGCTTCGAAGATATCTATAAGAGCGTCTTCATGAATTATGAAGCTACGCGCTATACGCCTGTTGAAGAAAAGGAGAATGGTCGTATGATCGTCATCGTACCCAAAAAATATGAGGAAGATATTGAAGATTTCGTTGATTGGAAAAACCAACGCGGTCTCCGTACCGAGGTGAAAGTGGCAGAAGATATTGCTTCTCCCGTTACAGCTAATGCTATTCAGCAGTTCGTTAAGCAAGAATACGAGAAAGAAGGTAATGATTTGACCTATGTTCTTTTGGTTGGCGATCACAAAGATATTCCTGCCAAAATTACTCCGGGGATCAAATCCGACCAGGTATATGGACAAATAGTAGGTAATGACCACTACAACGAAGTCTTCATCGGTCGTTTCTCATGTGAGAGCAAAGAGGATCTGAAGACACAAATCGATCGGACTATTCACTATGAGCGCAATATAACCACGGAAGACAAATGGCTCGGTCAGGCTCTTTGTATTGCTTCGGCTGAAGGAGGCCCATCCGCAGACAATGGTGAAAGTGATATCCAGCATGAGAATATAATCGCCAATCTGCTTACCCAGTATGGCTATACCAAGATTATCAAATGTTATGATCCGGGAGTAACTCCTAAAAACATTATTGATGCTTTCAACGGAGGAATCTCGTTGGCCAACTATACGGGCCACGGAAGCGAAACAGCTTGGGGTACGTCTCACTTCGGCACCACTCATGTGAAGCAGCTTACCAACAGCAACCAGCTACCGTTTATTTTCGACGTAGCTTGTGTGAATGGCGATTTCCTGTACAACGTACCATGTTTCGCAGAAGCCCTGATGCGTGCACAAAAAGATGGTAAACCGACAGGTACTGTTGCTATCATAGCGTCTACGATCAACCAGTCTTGGGCTTCTCCTATGCGCGGGCAGGATGAGATGAACGAAATTCTGTGCGAAAAACACCCGAACAACATCAAGCGTACTTTCGGAGGTGTCACCATGAACGGTATGTTTGCTATGGTGGAAAAGTATAAAAAGGATGGTGAGAAGATGCTCGACACATGGACTGTATTCGGCGACCCCTCGCTGCTCGTTCGTACACTTGTCCCGACCAAAATGCAGGTTACGGCTCCGGCAAATATCTCTGCCTCTGCACAGACATTCGAAGTAGCTTGCGACTATAACGGTGCTATTGCTACGCTCTCTGACGATGGTGATATGGTCGGCACTGCTATCGTGAAAGACGGTAAGGCTATCATCAAATTAAATGAGAGTATCGCTGATGAAACGAACTTGACGCTCACCGTAGTAGGATACAATAAGGTTACTGTGATAAAGGATGTGAAAGTGGAAGGTACATCTATTGCCGACGTAGCCAATGATAAGCCTTATACTGTAGCTGTATCAGGTAAGACGATAACTGTAGAAAGTCCTGCTGCCGGGCTGACGATCTTCGATATGAACGGCCGTCGTGTAGCTACTGCTAAAAACCGCATGGTATTCGAAGCACAAAACGGCGTGTATGCCGTTCGCATCGCTACTGAAGGCAAGACGTATACAGAAAAGGTTATAGTGAAG","5.50","-9.33","80961","MKKNFSRIVSIVAFSSLLGGMAFAQPAERGRNPQVRLLSAEQSMSKVQFRMDNLQFTGVQTSKGVAQVPTFTEGVNISEKGTPILPILSRSLAVSETRAMKVEVVSSKFIEKKDVLIAPSKGVISRAENPDQIPYVYGQSYNEDKFFPGEIATLSDPFILRDVRGQVVNFAPLQYNPVTKTLRIYTEIVVAVSETAEAGQNTISLVKNSTFTGFEDIYKSVFMNYEATRYTPVEEKENGRMIVIVPKKYEEDIEDFVDWKNQRGLRTEVKVAEDIASPVTANAIQQFVKQEYEKEGNDLTYVLLVGDHKDIPAKITPGIKSDQVYGQIVGNDHYNEVFIGRFSCESKEDLKTQIDRTIHYERNITTEDKWLGQALCIASAEGGPSADNGESDIQHENIIANLLTQYGYTKIIKCYDPGVTPKNIIDAFNGGISLANYTGHGSETAWGTSHFGTTHVKQLTNSNQLPFIFDVACVNGDFLYNVPCFAEALMRAQKDGKPTGTVAIIASTINQSWASPMRGQDEMNEILCEKHPNNIKRTFGGVTMNGMFAMVEKYKKDGEKMLDTWTVFGDPSLLVRTLVPTKMQVTAPANISASAQTFEVACDYNGAIATLSDDGDMVGTAIVKDGKAIIKLNESIADETNLTLTVVGYNKVTVIKDVKVEGTSIADVANDKPYTVAVSGKTITVESPAAGLTIFDMNGRRVATAKNRMVFEAQNGVYAVRIATEGKTYTEKVIVK","545476 547683","Gingipain R2 is a thiol protease thought to be responsible for intracellular protein degradation associated with peridontal disease. This protein, unlike the R1 form (PG1768) does not include a C-terminal adhesin region with hagA hemagglutinin repeats.Gene nomenclature and strains (from Lamont and Jenkinson): rgp-2 (HG66), rgpB (ATCC 33277), prtII (W50), prpR2 (W50).Veith et al. (2002) identified this protein by two-dimensional gel electrophoresis and peptide mass fingerprinting of outer membranes prepared from strain W50. They present the following results: This protein together with PG1838, PG1570 and the C-terminal domain of PG1768 migrate as vertical streaks on 2D-PAGE at a MW 13-42 kDa higher than that calculated from their gene sequences. The electrophoretic behaviour of these proteins together with their immunoreactivity with a monoclonal antibody that recognises LPS is consistent with a modification that could anchor the proteins to the outer membrane. The proposed LPS-attachment site is in the conserved C-terminal 50 amino acid residues of each of these proteins. Based on signal peptide sequence comparisons to PG0626, PG0627, PG1592, PG1840, PG0836, PG0023, PG1893, the mature N-terminus of this protein is predicted to be pyroglutamate.TIGR ID: PG0506","arginine-specific cysteine proteinase: gingipain R2","Periplasm, Cytoplasm, Extracellular","This sequence corresponds to the previously sequenced AF007124 from P.gingivalis strain W50, a predicted prtRII gene. See also U85038 and D64081. No significant hits in gapped BLAST except to paralogs.See also POYRGPB.","
InterPro
IPR001769
Family
Peptidase C25, gingipain
PF01364\"[230-578]TPeptidase_C25
InterPro
IPR005536
Domain
Peptidase C25, C-terminal ig-like region
PF03785\"[580-660]TPeptidase_C25_C
InterPro
IPR012600
Domain
Propetide, peptidase C25
PF08126\"[25-229]TPropeptide_C25
InterPro
IPR013783
Domain
Immunoglobulin-like fold
G3DSA:2.60.40.10\"[579-664]TIg-like_fold
InterPro
IPR014756
Domain
Immunoglobulin E-set
SSF81296\"[580-661]TIg_E-set
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.10390\"[230-346]TG3DSA:3.40.50.10390
G3DSA:3.40.50.1460\"[347-577]TG3DSA:3.40.50.1460
SSF52129\"[230-579]TSSF52129


","No hit to the COGs database.","***** PF01364 (Peptidase family C25) with a combined E-value of 7.1e-263. PF01364A 46-95 PF01364B 245-252 PF01364C 260-313 PF01364D 373-410 PF01364E 491-541 PF01364F 610-663 PF01364G 694-732","Residues 649-736 are identical to a (PROTEASE PRECURSOR THIOL SIGNAL) protein domain (PD004371) which is seen in CPG2_PORGI.Residues 3-219 are identical to a (PROTEASE CYSTEINE PRECURSOR THIOL) protein domain (PD005390) which is seen in O33441_PORGI.Residues 439-648 are identical to a (PROTEASE PROTEINASE CYSTEINE PRECURSOR) protein domain (PD007636) which is seen in O33441_PORGI.Residues 221-438 are identical to a (PROTEASE THIOL CYSTEINE PRECURSOR) protein domain (PD005006) which is seen in O33441_PORGI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Thu Feb 7 18:11:33 2002","Tue Dec 5 12:29:25 MST 2000","Thu Feb 7 17:09:33 2002","Tue Dec 5 10:56:09 MST 2000","Fri Mar 23 11:16:43 MST 2001","Fri Mar 23 11:16:43 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG0461 is paralogous to PG1768, arginine-specific cysteine proteinase (gingipain R1). Residues 3-662 are 84% similar to residues 2-659 of PG1768. Weaker similarity (24%) is seen to PG1605, although PG0461 does not contain the hemagglutinin repeats. Short domains of PH0461 show similarity to PG1606, PG1602, PG1922, PG0022, PG1164, PG0375 and PG1570.","Mon Apr 2 14:29:24 MDT 2001","Tue Jul 13 14:56:53 2004","No significant hits to the PDB database (E-value < E-10).","","","Residues 230 to 578 (E-value = 3.3e-275) place PG0461 in the Peptidase_C25 family which is described as Peptidase family C25 (PF01364)Residues 580 to 660 (E-value = 1.1e-56) place PG0461 in the Peptidase_C25_C family which is described as Peptidase family C25, C terminal ig-like domain (PF03785)","Tue Jul 13 14:56:53 2004","34540322","Thu Feb 7 18:10:58 2002","See Proteases/Hemagglutinin Analysis
Veith,P., Talbo,G., Slakeski,N., Dashper,S., Moore,C.,Paolini,R., Reynolds,E., Major outer membrane proteins and proteolytic processing of RgpA, and Kgp of Porphyromonas gingivalis W50, Biochem J. 2002 (in press).Slakeski,N., Bhogal,P.S., O'Brien-Simpson,N.M. and Reynolds,E.C.Characterization of a second cell-associated Arg-specific cysteine proteinase of Porphyromonas gingivalis and identification of an adhesin-binding motif involved in association of the prtR and prtK proteinases and adhesins into large complexes. Microbiology 144 (Pt 6), 1583-1592 (1998). PubMed: 9639929.Gharbia,S.E. and Shah,H.N.Molecular analysis of surface-associated enzymes of PorphyromonasgingivalisClin. Infect. Dis. In pressAduse-Opoku,J., Muir,J., Slaney,J.M., Rangarajan,M. and Curtis,M.A.Characterization, genetic analysis, and expression of a proteaseantigen (PrpRI) of Porphyromonas gingivalis W50Infect. Immun. 63 (12), 4744-4754 (1995)Rangarajan,M., Aduse-Opoku,J., Slaney,J.M., Young,K.A. andCurtis,M.A.The prpR1 and the prR2 arginine-specific protease genes ofPorphyromonas gingivalis W50 produce five biochemically distinctenzymesMol. Microbiol. 23 (1997) In pressKirszbaum,L., Sotiropoulos,C., Jackson,C., Cleal,S., Slakeski,N.and Reynolds,E.C.Complete nucleotide sequence of a gene prtR of Porphyromonasgingivalis W50 encoding a 132 kDa protein that contains anarginine-specific thiol endopeptidase domain and a haemagglutinindomain.Biochem. Biophys. Res. Commun. 207 (1), 424-431 (1995)Pike,R., McGraw,W., Potempa,J. and Travis,J.Lysine- and arginine-specific proteinases from Porphyromonasgingivalis. Isolation, characterization, and evidence for theexistence of complexes with hemagglutininsJ. Biol. Chem. 269 (1), 406-411 (1994)Pavloff,N., Potempa,J., Pike,R.N., Prochazka,V., Kiefer,M.C.,Travis,J. and Barr,P.J.Molecular cloning and structural characterization of theArg-gingipain proteinase of Porphyromonas gingivalis. Biosynthesis as a proteinase-adhesin polyprotein.J. Biol. Chem. 270 (3), 1007-1010 (1995)Aduse-Opoku,J., Slaney,J.M., Rangarajan,M., Muir,J., Young,K.A. and Curtis,M.A.The Tla protein of Porphyromonas gingivalis W50: a homolog of theRI protease precursor (PrpRI) is an outer membrane receptorrequired for growth on low levels of heminJ. Bacteriol. 179 (15), 4778-4788 (1997)Nakayama,K.Domain-specific rearrangement between the twoArg-gingipain-encoding genes in Porphyromonas gingivalis: possible involvement of nonreciprocal recombination.Microbiol. Immunol. 41 (3), 185-196 (1997) Nakayama,K., Kadowaki,T., Okamoto,K. and Yamamoto,K.Construction and characterization of arginine-specific cysteineproteinase (Arg-gingipain)-deficient mutants of Porphyromonasgingivalis. Evidence for significant contribution of Arg-gingipain to virulence.J. Biol. Chem. 270 (40), 23619-23626 (1995)","","Tue Jul 13 14:56:53 2004","","1","","","PG0506" "PG0461.1","547884","548135","252","TTGAGATTATGTGCCATAGTGCTTCGTTTTAGGTGGAGATATGGTTCTGTTATTGAGGAAAATATTCTGTTTATGAGAGAGAAATCTTTTTTTGGCCGAAAAGAAATATTTTCCACCCGTGGAAAAGATGTTTTCCCGACCTGGAAAATATTTTTTCCAGGCCGGGAAAATTTATGTGTAAAACTGAAAAATCACAAACCGTTGCATTGCAGTCGTTTATGTGGAAATCCAGAAGAGAGCTTTTTTCTGCTC","","","10081","LRLCAIVLRFRWRYGSVIEENILFMREKSFFGRKEIFSTRGKDVFPTWKIFFPGRENLCVKLKNHKPLHCSRLCGNPEESFFLL","","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-15]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","","","Tue Feb 20 13:33:33 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Sun Jun 24 14:52:11 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Sun Jun 24 14:52:11 MDT 2001","","","","","","","1","","","" "PG0462","548829","548230","600","ATGTCGCATAGGCCCATAGCCATATTCGATTTCGACGGTACGCTGACCCGATGCGATTCTTTGCTTCCCTTTCTGCGGCAAGCCCAGCCGGTTATTCTCTTTTGGCTCAGACTGCCTTTCTATCTGGCCATGTGGATGTGCTACAAACTTCGGCTGGCTCCGGCCGACCGGACGAAAGCAGCCATCCTTTCCACAGTCTTGAAAGGAAAAAGGGAGGTGGAATGCCGGGCAATGGGACAGCGATTCGTGCCTGCTATCGAAAGCATTCTTCGTCCCGAAGCCCTTCGCTGTTTGGAATGGCATCGCAGCGAAGGACATCGGCTGGTGCTACTGACAGCCTCGCTTCTGCCTTGTGTGGAGCCATGGGCTGAAAAGACGGGGTTTCATACCGTCATTGCTACCCTTCCGGAGATAAAATCCGGCATTCTGACGGGTCGGTTCGAAGGCAATAACTGCAAGGGAAAAGAGAAAATCCACAGGTTGGATCGAGCCTTGCCGCATTGGCGAGATTCGATCTCCTATGGCTATGGCGATAGCCCCTCCGACCGCCCCTTGCTTAGCCTCTGCACACATTCCTACTATAGAAGATTCCCTGCTCTA","10.10","11.35","22979","MSHRPIAIFDFDGTLTRCDSLLPFLRQAQPVILFWLRLPFYLAMWMCYKLRLAPADRTKAAILSTVLKGKREVECRAMGQRFVPAIESILRPEALRCLEWHRSEGHRLVLLTASLLPCVEPWAEKTGFHTVIATLPEIKSGILTGRFEGNNCKGKEKIHRLDRALPHWRDSISYGYGDSPSDRPLLSLCTHSYYRRFPAL","548829 548230","TIGR ID: PG0508","conserved hypothetical protein(possible phosphoserine phosphatase)","Cytoplasm","Residues 4 to 197 share 34% identity with gb|AAG08932.1|AE004967_3 (AE004967), a conserved hypothetical protein in Pseudomonas aeruginosa.Residues 1 to 197 share 35% identity with emb|CAA09091.1| (AJ010321), the cicA protein in Caulobacter crescentus.","
InterPro
IPR006383
Domain
HAD-superfamily hydrolase, subfamily IB, PSPase-like
TIGR01488\"[6-189]THAD-SF-IB
InterPro
IPR006385
Domain
HAD-superfamily hydrolase, subfamily IB, PSPase-like, bacterial
TIGR01490\"[6-200]THAD-SF-IB-hyp1
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.1000\"[89-193]TG3DSA:3.40.50.1000
SSF56784\"[1-193]TSSF56784


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 1-197 are 34% similar to a (CICA PROTEIN) protein domain (PD179834) which is seen in CICA_CAUCR.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Feb 23 16:36:30 MST 2001","Thu Feb 22 16:08:59 MST 2001","Thu Feb 22 16:08:59 MST 2001","","Thu Feb 22 16:08:59 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 22 16:08:59 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Feb 22 16:08:59 MST 2001","34540324","","","","","","1","","","PG0508" "PG0463","549679","548822","858","ATGAGACCTAAGCAGTGGATCAAGAATCTGATCGTATTCCTACCCCTGTTTTTCGGACACAGGATTGGTGATACGGAAGCCTTGCTAAGGCTGACCATACTCCTGATAGCATTTTGTTCGGCATCGAGTGCAGTCTATCTCTTCAATGATATTTGCGATAGAGCGATCGACCGCCTGCATCCCGTCAAATCGAGACGCCCTATTGCCAGCGGAGCATGGAGTCTCTCCAAAGCTTATATACTGATAGCTCTGCTTGTGGTTTTGGCTTGCGCAGTGATATTGTCACTCCTTGATTTCCCTTTTGCCGTCTATGCCCTGATCTCTATAGTGCTTTATCTTCTGCTGAATCTTTTCTATTCACTGAAAGGCAAACACATTCCCATCGTGGATGCTTTCCTCGTAGCTTTCGGCTTTCTGATCAGATTGTATGCGGCCGGAGCAGTGAGCGGAGTACCCATTTCCCATTGGTTGGCTTTGATGACGCTCTTCCTATCCTTGCTGCTCGCCTTCGGCAAGAGGAAAGAAGACCTGCGTCTGCTGCAGGAGACGGCTCTTTCATCGCGTCCTGTCGTCAAACATTATACGGATGGATTCCTCAATGTCCTACTGGCCATTCTCTCGGCTACGATCATTATACTCTATACCCTCTATGCCACAGACGGCGAAGTCATATCGAGGAATGGCCCGTATCTGTACGTATCTGTCTTTCCCGTTGCCACCGGACTTTTCCATTATCTGAGACACGTGATAGTGAAAGGCTGTCATTGCAATCCGACCGATATGCTCTATCAGGACCACGGGCTCCAGCTTTCGGTAGTTGTGTGGATCATTCTTTATTCGATAAGCCCTTATGTCGCA","9.90","9.91","31943","MRPKQWIKNLIVFLPLFFGHRIGDTEALLRLTILLIAFCSASSAVYLFNDICDRAIDRLHPVKSRRPIASGAWSLSKAYILIALLVVLACAVILSLLDFPFAVYALISIVLYLLLNLFYSLKGKHIPIVDAFLVAFGFLIRLYAAGAVSGVPISHWLALMTLFLSLLLAFGKRKEDLRLLQETALSSRPVVKHYTDGFLNVLLAILSATIIILYTLYATDGEVISRNGPYLYVSVFPVATGLFHYLRHVIVKGCHCNPTDMLYQDHGLQLSVVVWIILYSISPYVA","549784 548822 [Bad Olap 615 86 0]","TIGR ID: PG0509","conserved hypothetical protein(possible 4-hydroxybenzoate octaprenyltransferase)","Inner membrane, Cytoplasm","Residues 2 to 282 share 29% identity with emb|CAB89063.1| (AL353872), a putative integral membrane protein in Streptomyces coelicolor A3(2).Residues 1 to 276 share 32% identity with emb|CAA17870.1| (AL022076) hypothetical protein Rv3806c in Mycobacterium tuberculosis.","
InterPro
IPR000537
Family
UbiA prenyltransferase
PF01040\"[9-283]TUbiA


","BeTs to 3 clades of COG0382COG name: 4-hydroxybenzoate octaprenyltranferaseFunctional Class: HThe phylogenetic pattern of COG0382 is AmTkyq-Ce---uj----inxNumber of proteins in this genome belonging to this COG is 1","***** IPB000537 (UbiA prenyltransferase) with a combined E-value of 2e-07. IPB000537 36-75","Residues 1-173 are 26% similar to a (NODULATION PROTEIN TRANSMEMBRANE NO) protein domain (PD124502) which is seen in Y4NM_RHISN.Residues 124-276 are 25% similar to a (HYPOTHETICAL 32.7 KD PROTEIN) protein domain (PD124503) which is seen in O53583_MYCTU.","","Thu Jun 14 10:45:13 MDT 2001","","Thu Jun 14 10:45:13 MDT 2001","Thu Jun 14 10:45:13 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 10:45:13 MDT 2001","Thu Jun 14 10:45:13 MDT 2001","","","Fri Feb 23 16:37:27 MST 2001","Wed Jun 20 13:26:41 MDT 2001","Thu Jun 14 10:45:13 MDT 2001","Wed Jun 20 13:26:41 MDT 2001","Wed Jun 20 13:26:41 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 22 16:04:28 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 9 to 283 (E-value = 1.6e-05) place PG0463 in the UbiA family which is described as UbiA prenyltransferase family (PF01040)","Wed Jun 20 13:26:41 MDT 2001","34540325","","","","","","1","","","PG0509" "PG0464","550151","549699","453","ATGGCAAAAATCAATTTCTATGCTGAAGGCGTCAGCCTTCCTCGGATCAGAAGACGGATCGTCGGTAAGTGGATAGCCGAAGTATGCAGCCGATATGGGAAAGCGGTGGGAGAAATCTCCTATCTTTTCTGTGATGACGAATATATCCTGAAAGCCAATCAGGAATTTCTCGATCATGACTACTACACCGACATCATCACCTTCGATTCCTGCGAAGCGGATACGGTGAATGGCGACCTGCTTATCAGTCTCGATACCGTACGCTCGAATGCCCGTGCTCTTGATCTTCGATACGAAGACGAACTGCATCGTGTCATTATCCACGGCATACTGCATCTTTGCGGATTGAAAGACAAGAGCAAAAAGGATGAAGCCCAAATGCGTGCAGCCGAAGAGAAAGCCCTTGTCATGCTGCGAGAAACCATCGGATCGGAGCTTTCCCTATTGCATACA","5.40","-4.98","17268","MAKINFYAEGVSLPRIRRRIVGKWIAEVCSRYGKAVGEISYLFCDDEYILKANQEFLDHDYYTDIITFDSCEADTVNGDLLISLDTVRSNARALDLRYEDELHRVIIHGILHLCGLKDKSKKDEAQMRAAEEKALVMLRETIGSELSLLHT","550151 549699 [Shorter 614 86 99]","TIGR ID: PG0510","conserved hypothetical protein","Cytoplasm","30% similarity to gb|AAC66448.1| (AE001119), a conserved hypothetical protein in Borrelia burgdorferi.31% similarity to gb|AAC07338.1| (AE000736), a hypothetical protein in Aquifex aeolicus.","
InterPro
IPR002036
Family
Protein of unknown function UPF0054
PD005688\"[53-115]TUPF0054
PF02130\"[44-131]TUPF0054
TIGR00043\"[37-139]TUPF0054
noIPR
unintegrated
unintegrated
G3DSA:3.40.390.30\"[13-138]TG3DSA:3.40.390.30
SSF55486\"[4-140]TSSF55486


","BeTs to 12 clades of COG0319COG name: Uncharacterized BCR (putative metal-binding protein)Functional Class:  SThe phylogenetic pattern of COG0319 is -----qvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB002036 (Uncharacterized protein family UPF0054) with a combined E-value of 2.3e-10. IPB002036A 60-72 IPB002036B 77-127","Residues 38-120 are 33% similar to a (PROTEIN CONSERVED INTERGENIC REGION) protein domain (PD005688) which is seen in O51087_BORBU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Feb 22 15:57:40 MST 2001","Thu Feb 22 15:57:40 MST 2001","Thu Feb 22 15:57:40 MST 2001","Thu Feb 22 15:57:40 MST 2001","Thu Feb 22 15:57:40 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 22 15:57:40 MST 2001","-51% similar to PDB:1OZ9 Crystal structure of AQ_1354, a hypothetical protein from Aquifex aeolicus (E_value = 9.7E_12);-55% similar to PDB:1TVI Solution structure of TM1509 from Thermotoga maritima: VT1, a NESGC target protein (E_value = 7.0E_10);","","","Residues 44 to 131 (E-value = 9.4e-07) place PG0464 in the UPF0054 family which is described as Uncharacterized protein family UPF0054 (PF02130)","Thu Feb 22 15:57:40 MST 2001","34540326","","","","","","1","","","PG0510" "PG0465","551419","550190","1230","ATGGTTCTTAATTACATTTTCGTAGCTTTTTTCCTCGTTTCGCTCATTGTGGCACTCGTTCGATTGATAGCTTTCGGCGATGTGTCCGTATTCGATGAGATGGTGCAGGCTTCTTTCAGCCAGTCGAAGAATGCCTTTGAGATAGCCCTTGCACTGACCAGTGTACTCGCTCTGTGGCTCGGTCTGATGAAAATAGCAGAACGAAGTGGCCTTATAAGCAAGCTGGCACAGATCAGTTCACCTGTTCTAAGCCGATTGTTCCCTTCTGTACCTAAGGACCATCCCGCACTGGGCAATATCTTCATGAATATATCGGCCAACCTGTTAGGCCTTGACAATGCTGCTACCCCCCTCGGTATCCGTTCGATGGAGAGTTTGCAAACGATCAATCAGCAAAAAGATAAAGCCAGCGATGCCATGATTATGTTCTTGGCCATCAATGCCAGTGGACTTACGCTGATTCCCTCTTCCATCATGGCCTATCGCCTACAGGTCGGGGCGGCAAATCCTACCGACATCTTTGTCCCGGTTCTGATTGCCACGTTTGCTTCCACATTGGTCGCCATCCTTGCAGTAGGGATCAAGCAGCGTATCGATTTCTTCCAAAAACCTCTTCTTCTTTTTCTTCTTTCCTCTCTTCTCTTTATCGGAGGGGTAATCTATGCAGGACGGACTCTGCCTCCGGAAACATTTAGTTGTATCAGCACTGCATTTGCATCCATTCTTCTGTTTGGAATAATGTGCGGATTCGTCATTAGTGGACTGCGTGCACGCATCAATGTGTATGATGCCTTTATCGAAGGGGCAAAAGATGGTTTCGGTACGGCTGTGACCATCATTCCCTATCTGCTGGCCATGCTGGTCGGTATCGGTATATTCAGAGCTTCCGGTGCCATGGATCTGATCACTGAAGGCTTGCGCGGACTGGTCGGCTTTTGGGGAGGAGATATGAAGTTTGTGGAAGGAATCCCGACCATGCTAATGAAACCACTTAGCGGAAGTGGAGCCAGAGGGCTCATGGTCGATGCCATGCAGACGTACGGAGCCGACAGCTTTGTCGGCCGTCTATGCAGTATTGTACAGGGCTCCAGCGATACCACGTTCTACGTCGTAGCCCTCTACTATGGAGCCGTCAAAATACGCAATACACGTTATACGGTGAGCTATTCCCTTTTGGCCGATTTGGCCGGAGCGCTGACAGCCATTGCTGTCACTTATATTTTCTTTGGT","8.70","3.09","43838","MVLNYIFVAFFLVSLIVALVRLIAFGDVSVFDEMVQASFSQSKNAFEIALALTSVLALWLGLMKIAERSGLISKLAQISSPVLSRLFPSVPKDHPALGNIFMNISANLLGLDNAATPLGIRSMESLQTINQQKDKASDAMIMFLAINASGLTLIPSSIMAYRLQVGAANPTDIFVPVLIATFASTLVAILAVGIKQRIDFFQKPLLLFLLSSLLFIGGVIYAGRTLPPETFSCISTAFASILLFGIMCGFVISGLRARINVYDAFIEGAKDGFGTAVTIIPYLLAMLVGIGIFRASGAMDLITEGLRGLVGFWGGDMKFVEGIPTMLMKPLSGSGARGLMVDAMQTYGADSFVGRLCSIVQGSSDTTFYVVALYYGAVKIRNTRYTVSYSLLADLAGALTAIAVTYIFFG","551419 550190","TIGR ID: PG0511","possible spore maturation protein","Inner membrane, Cytoplasm","Very strong similarity over the entire length to a conserved hypothetical protein PA5478, gi|9951811|gb|AAG08863 in Pseudomonas aeruginosa (strain PAO1). Also strong siliarity to spore maturation protein A, spP35157 in Bacillus subtilis, a spore maturation protein, dbjBAB05293.1, in Bacillus halodurans, spore maturation protein B gi|1651872|dbj|BAA16799 in Synechocystis sp.This sequence is similar to BT3284.","
InterPro
IPR011415
Family
Predicted bifunctional spore maturation protein, fused SpmA/SpmB
PIRSF036542\"[2-410]TSpmA_SpmB
InterPro
IPR011642
Domain
Nucleoside recognition
PF07670\"[49-185]T\"[276-381]TGate
noIPR
unintegrated
unintegrated
PD036528\"[2-197]TPD036528


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 261-342 are 46% similar to a (PROTEIN SPORE MATURATION A) protein domain (PD034061) which is seen in P72783_SYNY3.Residues 347-410 are 48% similar to a (SPORE MATURATION PROTEIN A) protein domain (PD034062) which is seen in SPMB_BACSU.Residues 2-190 are 41% similar to a (SPORE MATURATION PROTEIN B) protein domain (PD036528) which is seen in SPMA_BACSU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Apr 5 18:49:53 MDT 2001","Mon Dec 22 10:24:31 2003","Tue Feb 20 15:21:01 MST 2001","","Tue Feb 20 15:21:01 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 20 15:21:01 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 2 to 199 (E-value = 3e-85) place PG0465 in the Spore_mat_A family which is described as Spore maturation protein A (PF04291)Residues 252 to 409 (E-value = 4.6e-37) place PG0465 in the Spore_mat_B family which is described as Spore maturation protein B (PF03751)","Mon Dec 22 10:24:31 2003","34540327","","","","","","1","","","PG0511" "PG0466","552005","551442","564","ATGACCAAACTAATCATCATCTCGGCCCCATCCGGAACAGGTAAGAGCACCGTTATCGAACGACTTCTTACGGACAGAGAGCTTAACCTTCATTTCTCTATTTCTGCAACCAGCCGTGCACCTCGTGGAGAAGAGCAGAATGGACGAGAGTATTACTTCTTGTCTCCGGAAGAATTCAGACGAAGAATAGAGGCCAACGAATTCGTAGAGTACGAAGAGGTGTACAGAGACAAATACTATGGCACGCTCAAAAGTGAGGTAGAGCGGATCCTGAAAGAAGAGAAAAATGTCATTTTCGACGTTGATGTCGTTGGAGCACAGAGCATCAAGAAATATTATGGAGATAGGGCATTGGCTATCTTTATTTTGCCTCCTTCTATAGAAGAGCTGCGTTCTCGTCTGCAAAAACGAGGTACGGACTCTATGGAAACTATTAAGCAGCGCGTGGACAAGGCCGAGAAAGAAATCGGTTATGCACATCTTTTCGACCTGCGCTTTGTAAATGATGATTTGGTTACTTGTGTGGAACAGATAAGGAAAGCGATTGCCCAATTCATAGCCAAA","6.60","-0.55","21833","MTKLIIISAPSGTGKSTVIERLLTDRELNLHFSISATSRAPRGEEQNGREYYFLSPEEFRRRIEANEFVEYEEVYRDKYYGTLKSEVERILKEEKNVIFDVDVVGAQSIKKYYGDRALAIFILPPSIEELRSRLQKRGTDSMETIKQRVDKAEKEIGYAHLFDLRFVNDDLVTCVEQIRKAIAQFIAK","552005 551442","TIGR ID: PG0512","guanylate kinase (GMP kinase)","Cytoplasm","Numerous significant hits to guanylate kinase (GMP kinase) in gapped BLAST; e.g. residues 4-185 are 44% similar to gbAAF36761.1 guanylate kinase of Mycoplasma gallisepticum, residues 3-182 are 42% similar to gbAAF30621.1AE002120_13 guanylate kinase of Ureaplasma urealyticum, residues 4-188 are 45% similar to spQ9ZCH7KGUA_RICPR guanylate kinase (GMP kinase) of Rickettsia prowazekii.","
InterPro
IPR008144
Family
Guanylate kinase
PF00625\"[38-144]TGuanylate_kin
PS00856\"[37-54]TGUANYLATE_KINASE_1
PS50052\"[2-183]TGUANYLATE_KINASE_2
InterPro
IPR008145
Domain
Guanylate kinase/L-type calcium channel region
SM00072\"[1-186]TGuKc
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[63-184]TG3DSA:3.40.50.300
PTHR23117\"[22-188]TPTHR23117
PTHR23117:SF1\"[22-188]TPTHR23117:SF1
SSF52540\"[1-188]TSSF52540


","BeTs to 11 clades of COG0194COG name: Guanylate kinaseFunctional Class: FThe phylogenetic pattern of COG0194 is ----yqvcEbrhujgp--inxNumber of proteins in this genome belonging to this COG is 1","***** IPB000619 (Guanylate kinase) with a combined E-value of 1.9e-24. IPB000619A 5-22 IPB000619B 34-54 IPB000619C 64-110","Residues 115-188 are 43% similar to a (KINASE GUANYLATE GMP TRANSFERASE) protein domain (PD003452) which is seen in KGUA_RICPR.Residues 45-108 are 43% similar to a (PROTEIN KINASE DOMAIN SH3 GUANYLATE GMP TRANSFERASE) protein domain (PD001338) which is seen in KGUA_RICPR.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Mar 27 13:53:12 MST 2001","Thu Jul 24 14:15:50 2008","Tue Mar 27 13:53:12 MST 2001","Tue Mar 27 13:53:12 MST 2001","Tue Mar 27 13:53:12 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Jul 24 14:15:50 2008","-64% similar to PDB:1EX6 CRYSTAL STRUCTURE OF UNLIGANDED FORM OF GUANYLATE KINASE FROM YEAST (E_value = 8.0E_34);-64% similar to PDB:1EX7 CRYSTAL STRUCTURE OF YEAST GUANYLATE KINASE IN COMPLEX WITH GUANOSINE-5'-MONOPHOSPHATE (E_value = 8.0E_34);-64% similar to PDB:1GKY REFINED STRUCTURE OF THE COMPLEX BETWEEN GUANYLATE KINASE AND ITS SUBSTRATE GMP AT 2.0 ANGSTROMS RESOLUTION (E_value = 8.0E_34);-62% similar to PDB:2J41 CRYSTAL STRUCTURE OF STAPHYLOCOCCUS AUREUS GUANYLATE MONOPHOSPHATE KINASE (E_value = 4.1E_30);-63% similar to PDB:1Z6G Crystal structure of guanylate kinase from Plasmodium falciparum (E_value = 4.6E_29);","","","Residues 38 to 144 (E-value = 5.7e-30) place PG0466 in the Guanylate_kin family which is described as Guanylate kinase (PF00625)","Tue Mar 27 13:53:12 MST 2001","34540328","","","","","","1","","","PG0512" "PG0467","552928","552041","888","ATGATCCTATCTATGACCGGATTCGGCAAGCATACGATTCAATTCGCCGATAAAAAAATAACTGCGACCATCAAGTCGCTCAATAGCAAACAGTTCGATCTATCAACCAAGATTTCCAGCCGTTACCGTGATAGAGAACTACCTCTCAGGGCTTTGGTTTCGGCCGACATCGGACGGGGGAAAGTGGATTTCAGCTTGTTTCTCGAGGAATCCGGTAGTACGGATGTTGTATCTCAGATATTCGATACAGAAAAGATGTCCTCTTATTTCTTCCAACTCAAGGAATTCGGCGAAAAGATGGGAGTGGAAGTACCCGCAGGAGGATGGTTCGAACAGCTACTTCGGATCCCCGGAGTCATTCAGATAGATGAAGATAAAGAAGAAGAAATTCCAGAAGATGAATGGGCTGTCGTAATTGAAACTTGTCGGAGAGCCCTTGATCAGCTAATCGGATTCCGCGAGCAGGAGGGTGCTATGCTGGAGCAGGTGTTCACGGAGAAAATATCTAATATCTCTTCTTTGCTTCTGCAAATCGAACAGTATGAACCCGATAGGATCCAACGAATCAAAGAGCGGATAGAAGAGAACCTAACCAAAATATCAGAGAAAGACTACGACAAGAACAGATTCGAACAAGAGATGATTTATTATATCGAAAAGTTGGATGTAAATGAAGAGAAGCATCGCTTGCGGAATCATCTTTCTTATTTTCTCCAAACCATGCAAGGCGAGCCCGGACAAGGGAAAAAACTCAGCTTCATTGCACAAGAAATCGGCAGAGAAATCAATACGCTCGGCTCCAAAAGCAATCATGTGGAGATGCAGCAAATCGTCGTGCAGATGAAAGACGAATTAGAACAGATCAAAGAGCAAGTACTGAACGTATTA","4.80","-13.04","34402","MILSMTGFGKHTIQFADKKITATIKSLNSKQFDLSTKISSRYRDRELPLRALVSADIGRGKVDFSLFLEESGSTDVVSQIFDTEKMSSYFFQLKEFGEKMGVEVPAGGWFEQLLRIPGVIQIDEDKEEEIPEDEWAVVIETCRRALDQLIGFREQEGAMLEQVFTEKISNISSLLLQIEQYEPDRIQRIKERIEENLTKISEKDYDKNRFEQEMIYYIEKLDVNEEKHRLRNHLSYFLQTMQGEPGQGKKLSFIAQEIGREINTLGSKSNHVEMQQIVVQMKDELEQIKEQVLNVL","552928 552041","TIGR ID: PG0513","conserved hypothetical protein(possible yloC)","Cytoplasm","28% identity with dbj|BAB06233.1| (AP001515) BH2514, an unknown conserved protein in Bacillus halodurans.27% identity with emb|CAB84192.1| (AL162754), a hypothetical protein NMA0916 in Neisseria meningitidis Z2491.27% identity with gb|AAF84313.1|AE003980_5 (AE003980), a conserved hypothetical protein in Xylella fastidiosa.Similar results for other bacterial genera.","
InterPro
IPR005229
Family
Conserved hypothetical protein 255
TIGR00255\"[113-296]TCHP255
InterPro
IPR013527
Domain
YicC-like, N-terminal
PF03755\"[2-163]TYicC_N
InterPro
IPR013551
Domain
Domain of unknown function DUF1732
PF08340\"[209-296]TDUF1732


","BeTs to 5 clades of COG1561COG name: Uncharacterized stress-induced protein, YicC familyFunctional Class:  SThe phylogenetic pattern of COG1561 is -----Qv-eb-h----o----Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 190-295 are 35% similar to a (PROTEIN YLOC DIND-RPH INTERGENIC REGION ORF X HI0467) protein domain (PD012764) which is seen in O34441_BACSU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Feb 23 16:38:51 MST 2001","Thu Feb 22 15:54:22 MST 2001","Thu Feb 22 15:54:22 MST 2001","","Thu Feb 22 15:54:22 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 22 15:54:22 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 2 to 163 (E-value = 3.4e-10) place PG0467 in the YicC_N family which is described as YicC-like family, N-terminal region (PF03755)","Thu Feb 22 15:54:22 MST 2001","34540329","","","","","","1","","","PG0513" "PG0468","556343","553023","3321","ATGTCGAAGCTTTTCGGCAACAAATCGCAGCGTGACTTGAAAGAGGTAAAACCTTTCGTGGACAAAATCAAAGTTGCATATGGCGAAATCGAACGGCTGTCAGACGACGATCTTCGCGGACGTACAGCCATCTTGCGCCAAAAGATACAAGACTATGTAAAAGATGAGAGAGCAGAAATCGACAAGCTGAAAGTCGAGGTGGAAGGCAAGGACTTGGACGAACGAGAGGAGATTTGGGCTCAAGTAGACAAGCTCGAAAAAGAGATTTTGGACAAAATGGAAGTCGTTTTGGATGAAATTCTCCCCGAAGCATTTGCTATTATCAAAGATACTGCTCGCAGATTCGCCCAAAACGAAACTATTCGAGTCAAAGCCACTGATCTTGATCGTGATCTCGCAATCAACCATGATTTCGTCTCGATCGAGGGAGATACCGCCGTCTACCAAAACCACTGGGTGGCAGGAGGCAATGAAATCTTGTGGGACATGATTCACTATGATGTTCAGCTCATCGGTGGTACAGTCTTACACAAAGGAAAAATTGCCGAAATGGCTACCGGTGAGGGAAAGACATTGGTAGCTACCCTACCCGTATTCCTCAATGCTCTGACTGGTAACGGCGTGCATGTAGTGACGGTCAATGACTACCTTTCTAAACGTGACTCGGAATGGATGGGGCCACTGTATATGTTCCATGGTTTAACCGTGGATTGCATAGATAAGCACCAGCCCAATTCGGATGCCCGCCGCAAGGCCTATAATGCAGATATTACATTTGGCACCAATAACGAATTCGGCTTCGACTACTTGCGCGACAATATGGCCACGAGTCCTAAGGACTTGGTGCAGCGTAAGCACAACTACGCCATAGTCGACGAGGTGGATTCCGTATTGATCGATGACGCCCGAACTCCTTTGATTATTTCCGGCCCTACTCCCAAAGGTGAAGATCAGTTGTTCGAGGAGTTTTTGCCCAATGTGGAGAAAGTTGTCGAGGCACAGCGTAAACTTTGTTCACAATTACTTATCGATGCCAAGAATAAGATGGCATCTGAGGATAAGAAAGAACAGGAAGAGGGTTCTTTGCTACTCTTTCGTTCGTTCAAGGGTCTTCCCAAAAATAAACAGTTGATCAAGTATCTGAGCGAACCCGGCATCAAGAGCTCCATGCTGAAGACCGAAGAAGCATACATGGCTGAAAACATGAGGAATATGCATTTGGTCACAGACGAATTGTATTTCATCATAGATGAAAAGCGTAATAGCGTAGAGCTTACCGAGAAAGGTATCGACCTTCTGACGTCCCGTACAGATGACCCGAAATTCTTCGTCTTGCCTGATATTGCAGCTGAGTTATCCGCTTTGGACAATATGGAATCCGATGCAGAAAAACGTCGCGAAGCCAAGGATGAGATCATAGCCAACTATTCGATCAAGAGCGAGCGTGTACATACTGTCAATCAGTTGCTCAAAGCCTATGCCCTCTTCGAGAAGGATGATCAATACGTGGTCATGGACAATAAGGTGCTCATCGTAGACGAGCAGACCGGACGTATCATGGACGGACGTCGATATTCGGATGGCCTCCATCAGGCTATCGAAGCCAAAGAGCATGTGAAAGTAGAGGCTGCGACACAGACATTTGCAACTATCACTTTGCAGAACTATTTCCGCATGTATCATAAGCTGGCAGGGATGACCGGTACTGCTGAAACTGAAGCGGGAGAGCTTTGGGACATCTACAAACTGGACGTTGTAGTTATTCCGACAAACAAGCCTATCGCCCGTAAGGATATGAATGATCGTATCTATAAGACGGCACGTGAAAAATATGCAGCAGTTATCGAAGAGATTGTACGTCTTGTCGAAGAGGGCAGACCTGTACTTGTCGGTACTACTTCGGTGGAAATATCCGAATTGTTGAGCCGTATGTTACGCTTGCGTGGCATCCAACACAATGTACTCAATGCCAAATTGCATCAGAAGGAGGCCGAGATTGTAGCTCAGGCCGGTCAGAAAGGAACTGTTACCATCGCAACGAACATGGCCGGTCGTGGTACCGACATCAAGCTCTCTGCCGAGGTTAAGAAAGCCGGGGGTTTGGCTATCATTGGTACGGAAAGGCACGAATCCAGACGAGTGGACAGACAGCTTCGTGGTCGTTCCGGCCGTCAGGGTGATCCCGGTTCGTCCATATTCTATGTTTCCCTTGAAGATCATCTGATGCGCCTCTTTGCCACAGAAAAGATTGCATCATTGATGGATCGTTTAGGTTTCAAGGAAGGAGAAGTGCTCGAAAACAACATGCTGAGTAAGTCCGTGGAGCGTGCTCAAAAGAAGGTGGAAGAGAACAACTTCGGTATCCGTAAACATCTGCTTGAGTACGATGATGTAATGAATTCGCAGCGTGAAGTCATTTATACCCGTCGCCGTCATGCTTTGATGGGAGAGCGTATCGGTATGGATGTACTCAATACCATATACGACGTATGTAAGGCTCTGATTGACAATTATGCAGAAGCCAATGATTTCGAAGGCTTCAAGGAAGATCTGATGCGTGCACTCGCGATAGAATCTCCTATCACGCAAGAAATATTCAGAGGTAAGAAAGCAGAAGAGCTGACCGATATGCTTTTCGATGAAGCTTACAAGTCTTTCCAACGTAAGATGGATCTGATCGCAGAAGTGGCCCACCCTGTGGTTCATCAGGTATTCGAGACCCAAGCCGCCGTGTACGAGCGCATTCTAATCCCCATTACGGATGGTAAACGTGTCTATAACATAGGATGCAATTTGCGTGAAGCGGATGAAACTCAAGGGAAAAGCATCATCAAAGAATTTGAGAAAGCTATCGTACTGCATACTATCGATGAGTCTTGGAAAGAACATCTGCGTGAGATGGACGAGCTTCGTAATTCCGTTCAGAATGCCAGCTACGAAAACAAAGATCCACTACTTATCTATAAACTCGAATCTTACGAACTGTTCCGCAAGATGGTAGAAGCCATGAACCGTAAGACCGTAGCGATCCTAATGCGTGCTCGGATACCGGTACCGGAGGCTCCTTCCCAAGAAGAGCTGGAACACAGGCGGCAAATAGAAATCCGACATGCAGCCGAACAACGTACGGACATGAGTAAGTATCGGACACAAAAAGACGATATAGAAGCCCAGCAGAAAGCACAAAGGGATGCGGCAAGCAGACCTCAGGGTGCAGCTGCTCCCCAGACACCGATAAGAAACGAGAATAAGATCGGGCGAAACGATCCTTGTCCTTGCGGTAGTGGCAAAAAGTTCAAACAGTGCCACGGGCGTAACCTG","5.80","-18.87","126472","MSKLFGNKSQRDLKEVKPFVDKIKVAYGEIERLSDDDLRGRTAILRQKIQDYVKDERAEIDKLKVEVEGKDLDEREEIWAQVDKLEKEILDKMEVVLDEILPEAFAIIKDTARRFAQNETIRVKATDLDRDLAINHDFVSIEGDTAVYQNHWVAGGNEILWDMIHYDVQLIGGTVLHKGKIAEMATGEGKTLVATLPVFLNALTGNGVHVVTVNDYLSKRDSEWMGPLYMFHGLTVDCIDKHQPNSDARRKAYNADITFGTNNEFGFDYLRDNMATSPKDLVQRKHNYAIVDEVDSVLIDDARTPLIISGPTPKGEDQLFEEFLPNVEKVVEAQRKLCSQLLIDAKNKMASEDKKEQEEGSLLLFRSFKGLPKNKQLIKYLSEPGIKSSMLKTEEAYMAENMRNMHLVTDELYFIIDEKRNSVELTEKGIDLLTSRTDDPKFFVLPDIAAELSALDNMESDAEKRREAKDEIIANYSIKSERVHTVNQLLKAYALFEKDDQYVVMDNKVLIVDEQTGRIMDGRRYSDGLHQAIEAKEHVKVEAATQTFATITLQNYFRMYHKLAGMTGTAETEAGELWDIYKLDVVVIPTNKPIARKDMNDRIYKTAREKYAAVIEEIVRLVEEGRPVLVGTTSVEISELLSRMLRLRGIQHNVLNAKLHQKEAEIVAQAGQKGTVTIATNMAGRGTDIKLSAEVKKAGGLAIIGTERHESRRVDRQLRGRSGRQGDPGSSIFYVSLEDHLMRLFATEKIASLMDRLGFKEGEVLENNMLSKSVERAQKKVEENNFGIRKHLLEYDDVMNSQREVIYTRRRHALMGERIGMDVLNTIYDVCKALIDNYAEANDFEGFKEDLMRALAIESPITQEIFRGKKAEELTDMLFDEAYKSFQRKMDLIAEVAHPVVHQVFETQAAVYERILIPITDGKRVYNIGCNLREADETQGKSIIKEFEKAIVLHTIDESWKEHLREMDELRNSVQNASYENKDPLLIYKLESYELFRKMVEAMNRKTVAILMRARIPVPEAPSQEELEHRRQIEIRHAAEQRTDMSKYRTQKDDIEAQQKAQRDAASRPQGAAAPQTPIRNENKIGRNDPCPCGSGKKFKQCHGRNL","556361 553023","Another possible translocase subunit, secE, is PG0354.TIGR ID: PG0514","preprotein translocase subunit A protein","Cytoplasm, Inner membrane","Numerous significant hits to preprotein translocase SecA proteins in gapped BLAST; e.g. residues 1-1105 are 38% similar to gb|AAF26459.1| preprotein translocase of Pseudomonas aeruginosa, residues 1-1000 are 38% similar to sp|O84707|SECA_CHLTR preprotein translocase SecA subunit of Chlamydia trachomatis , residues 1-1022 are 38% similar to gb|AAF38804.1| preprotein translocase SecA subunit of Chlamydophila pneumoniae AR39.This sequence is similar to BT4362.","
InterPro
IPR000185
Family
SecA protein
PR00906\"[100-124]T\"[515-537]T\"[552-569]T\"[589-602]TSECA
TIGR00963\"[60-1003]TsecA
PS01312\"[676-691]TSECA
InterPro
IPR001650
Domain
Helicase, C-terminal
PF00271\"[644-726]THelicase_C
PS51194\"[614-782]THELICASE_CTER
InterPro
IPR004027
Domain
SEC-C motif
PF02810\"[1087-1107]TSEC-C
InterPro
IPR011115
Domain
SecA DEAD-like
PF07517\"[1-578]TSecA_DEAD
InterPro
IPR011116
Domain
SecA Wing and Scaffold
PF07516\"[764-1016]TSecA_SW
InterPro
IPR011130
Domain
SecA preprotein cross-linking region
PF01043\"[384-534]TSecA_PP_bind
InterPro
IPR014018
Domain
SecA motor DEAD
PS51196\"[1-766]TSECA_MOTOR_DEAD
InterPro
IPR014021
Domain
Helicase superfamily 1 and 2 ATP-binding
PS51192\"[171-330]THELICASE_ATP_BIND_1
noIPR
unintegrated
unintegrated
G3DSA:1.10.3060.10\"[795-1016]TG3DSA:1.10.3060.10
G3DSA:3.40.50.300\"[1-592]T\"[593-766]TG3DSA:3.40.50.300
SSF52540\"[1-591]T\"[592-766]TSSF52540
SSF81767\"[391-544]TSSF81767
SSF81886\"[767-1095]TSSF81886


","BeTs to 12 clades of COG0653COG name: Preprotein translocase subunit SecA (ATPase, RNA helicase)Functional Class: NThe phylogenetic pattern of COG0653 is -----qvcebRhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB000185 (SecA protein) with a combined E-value of 0. IPB000185A 146-197 IPB000185B 198-237 IPB000185C 249-300 IPB000185D 489-541 IPB000185E 554-598 IPB000185F 599-645 IPB000185G 655-694 IPB000185H 699-745 IPB000185I 769-815 IPB000185J 948-996","Residues 1076-1105 are 70% similar to a (PROTEIN TRANSLOCASE SUBUNIT PREPROTEIN) protein domain (PD008947) which is seen in O87123_VIBAL.Residues 923-996 are 38% similar to a (TRANSLOCASE PROTEIN SECA PREPROTEIN SUBUNIT TRANSPORT) protein domain (PD000905) which is seen in O87123_VIBAL.Residues 387-614 are 43% similar to a (TRANSLOCASE PROTEIN SECA PREPROTEIN SUBUNIT TRANSPORT) protein domain (PD002156) which is seen in SECA_RHOCA.Residues 331-460 are 29% similar to a (PROTEIN TRANSLOCASE) protein domain (PD190320) which is seen in Q9Z765_BBBBB.","","Thu Jun 14 10:45:57 MDT 2001","","Thu Jun 14 10:45:57 MDT 2001","Thu Jun 14 10:45:57 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 10:45:57 MDT 2001","Thu Jun 14 10:45:57 MDT 2001","","Tue Mar 26 16:07:15 2002","Wed Mar 22 11:33:02 MST 2000","Mon Jan 5 12:45:24 2004","Tue Mar 26 16:07:15 2002","Wed Jun 20 13:17:28 MDT 2001","Wed Jun 20 13:17:28 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 27 14:13:42 MST 2001","-60% similar to PDB:1TF2 Crystal structure of SecA:ADP in an open conformation from Bacillus Subtilis (E_value = 2.5E_134);-60% similar to PDB:1TF5 Crystal structure of SecA in an open conformation from Bacillus Subtilis (E_value = 2.5E_134);-56% similar to PDB:2FSF Escherichia coli SecA, the preprotein translocase dimeric ATPase (E_value = 1.3E_130);-56% similar to PDB:2FSG Complex SecA:ATP from Escherichia coli (E_value = 1.3E_130);-56% similar to PDB:2FSH Complex SecA:AMP-PNP from Escherichia coli (E_value = 1.3E_130);","","","Residues 1 to 614 (E-value = 6.7e-164) place PG0468 in the SecA_protein family which is described as SecA protein, amino terminal region (PF01043)Residues 1087 to 1107 (E-value = 1.3e-10) place PG0468 in the SEC-C family which is described as SEC-C motif (PF02810)","Mon Jan 5 12:45:24 2004","161579531","","","","","","1","","","PG0514" "PG0469","558049","556457","1593","ATGGAGAAAGAACGTTCGGTGAAACGACTTGTAACGACCCTTTTGGCCGTATTGACTATAGGGAATGTTACAGTACAGGGGCAATCGGTTCATCCCAAGCTGGTGGTGGTAATTACCATTGACCAGTTGAGAGGTGATCTCCTCTCGTTTTGCCGCTCACAATATGGCACAGGTGGATTTAATCATCTGCTGCAGGATGGACTTGTTTTTAGCAACGTAGACTTCGGATTCGATGGGGTAGACGAAGCATCGGCTATTGCAGGTATATATACCGGCACCTATCCTAATCGTCACAGTATTACAGGCAGTACTGTATTCGACAGAGAAAAGAACAAGTCGGTATCCATTTTGGAAGACAAAAACTTCTTAGGCAATTATACATCTGAACATCTGTCTCCTCTCAAGCTCACTTCCGGCACTATCGGCGATGAACTACGGAGTGCAACGGATGGAAGGAGCAAGGTTTATGCGATAGCACCGAATGCCGTAGCAGCAATCGTAGCTGCAGGTCAGTCTGGAAATGGTGCATTCTGGCTCGAAGATCGTAAGGGGATGTGGGCTACGACTACCTACTACAAAGATTTCCCTTGGTACATCGATAAGTTCAACTCCTCGGCCGACTCTCCCTCTTCTAAAATAAGCAGTGTTGTATGGACTCCTATGTCCTCGCCCCAATCTTTGCCTGTGGGTGGAGATCCCGTTGCCTTTTCTCACAAATTCAGTCATTCCAACATCAGTCTTTTCAAACAATCTGCTCCGATCAATGAAGAAGTCACGACTTTGGCTCTCCGACTGATCGAGTATGGAGGATTGGAACTTGCCAAACAGCCCAATCTGCTATCGCTCACTTATTATGCAGGAAGATACCCTGCCAAACATCAGAGTGAGCATCAGGCCGAGATGGTCGACACGTACCGTCGCTTGGATGCTCAACTTGCTCGCCTGTTCACAGCTTTGGACAAAAAGATTGGCTTGGCAAACTGCATAATAGCCCTGAGTGGAACAGGCCACTTCAATAATTCGATCCCGGAGGAAAGCGTATTCCCCCATAAGCGTCATCGCTACTTCAGTCCAAAGCGATGCAAAGCTTTGATCAATATGTATTTGATGGCTCTGCACGGACAGGGACAATGGGTGTTGGATTATGCAGATGGTCAGTTGATTCTGGACAAAAAACTGGCAGAAAAGAAACAGGTCGATATGCGTCGGCTTCAATCAGAAGTGGCAGAATTTGCCCGACAGATGAGCGGTGTACGACTTGCATTGCCGGCGCACGAAATAGGTTCGGGAGCAATTAACGAAGAAGCGAATCGTTTTGTTCGTTCGTTCCGATTGGGGCAATCTGCGGATGTATGTTTGCAATTACAAGGAGGATGGATAGAAGGAGAAGAGGAGGTATCCTCGAATTCGGATCACAAACAAATACGCTATAATGCTGTAGCAGCTCCTTTTATCTTGGTGGTACCCGGCATAAAAGGACAAAAAGTGCAGCGAACTATTTCTTCGACAGAGATAGCTCCCACCTTGGCGTATATCCTCCGCATACGTCCTCCGACAGAGGCTCGTGCCTTGCCATTACCCGAAGTGGCTCTC","8.80","7.21","58511","MEKERSVKRLVTTLLAVLTIGNVTVQGQSVHPKLVVVITIDQLRGDLLSFCRSQYGTGGFNHLLQDGLVFSNVDFGFDGVDEASAIAGIYTGTYPNRHSITGSTVFDREKNKSVSILEDKNFLGNYTSEHLSPLKLTSGTIGDELRSATDGRSKVYAIAPNAVAAIVAAGQSGNGAFWLEDRKGMWATTTYYKDFPWYIDKFNSSADSPSSKISSVVWTPMSSPQSLPVGGDPVAFSHKFSHSNISLFKQSAPINEEVTTLALRLIEYGGLELAKQPNLLSLTYYAGRYPAKHQSEHQAEMVDTYRRLDAQLARLFTALDKKIGLANCIIALSGTGHFNNSIPEESVFPHKRHRYFSPKRCKALINMYLMALHGQGQWVLDYADGQLILDKKLAEKKQVDMRRLQSEVAEFARQMSGVRLALPAHEIGSGAINEEANRFVRSFRLGQSADVCLQLQGGWIEGEEEVSSNSDHKQIRYNAVAAPFILVVPGIKGQKVQRTISSTEIAPTLAYILRIRPPTEARALPLPEVAL","558049 556457","TIGR ID: PG0515","conserved hypothetical protein (possible alkaline phosphatase)","Outer membrane, Cytoplasm","Strong similarity to the PI-irrepressible alkaline phosphatase (PafA), gbAAF80345.1, in Chryseobacterium meningosepticum and to alkaline phosphatase , gbCAA88739.1, in Synechococcus PCC7942. Also similar to a Ca2+ ATPase, gbAAC41526.1, in Myroides odoratus.","
InterPro
IPR002591
Family
Type I phosphodiesterase/nucleotide pyrophosphatase
PF01663\"[33-471]TPhosphodiest
noIPR
unintegrated
unintegrated
SSF53649\"[18-513]TSSF53649


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 132-528 are 23% similar to a (ALKALINE PHOSPHATASE PHOSPHOMONOESTERASE CA2+ ATPASE) protein domain (PD025174) which is seen in Q47910_BBBBB.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Apr 5 18:52:00 MDT 2001","Tue Feb 20 15:10:54 MST 2001","Tue Feb 20 15:10:54 MST 2001","","Tue Feb 20 15:10:54 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 20 15:10:54 MST 2001","-39% similar to PDB:1S5L Architecture of the photosynthetic oxygen evolving center (E_value = );-39% similar to PDB:2AXT Crystal Structure of Photosystem II from Thermosynechococcus elongatus (E_value = );-39% similar to PDB:1WNB Escherichia coli YdcW gene product is a medium-chain aldehyde dehydrogenase (complexed with nadh and betaine aldehyde) (E_value = );-39% similar to PDB:1WND Escherichia coli YdcW gene product is a medium-chain aldehyde dehydrogenase as determined by kinetics and crystal stucture (E_value = );","","","Residues 33 to 515 (E-value = 5.9e-06) place PG0469 in the Phosphodiest family which is described as Type I phosphodiesterase / nucleotide pyrophosphatase (PF01663)","Thu Apr 5 18:52:00 MDT 2001","34540331","","","","","","1","","","PG0515" "PG0470","559275","558031","1245","ATGGCAAAAAAATATCTAAGCACACTGAAAGTATCGGCCGGACTATTCTCCGCCATCTTGATTGTCTTATTGGCCAGCGGACTTCTGGCCAATGCACAGACAGTTAGCACGGAGACGAAAGATCAAGGTCTGCAGATGAGCCTCTTGATCTCTTCTCCTTCTACAGAAGCGGTATACACTCGCTACGGTCATGTCGCATTCAGGATTCTCAATCCCGTACAAGGGACGGATATTGCTTACAATTATGGCATGTTCGATTATAACGAACCTAATTTCATGCTTCGATTTGTACGAGGCGAAACGGATTATTACGTTGAAGCTCTTTATACATCCTATTATGTGGAAGAATACCTTCGGAGCGGAAGAGGAATCGTGGAATTAGTATTGAATCTCACACAGGAAGAGATCGAAAAAGCTGAGAGGTATTTGGCATGGAATATTCGCCCCGAGAATAAACGATACCGCTATAATATCTTTTATGACAACTGTGCTACCCGCCTTATCGAGATCATAAAAGAAACCACAGGAGCTACCTTGCAAATCCCTCATGAGGGTGAGGAGAGAAAGTGGAGACAGCTGATCGATGAATGCTGTACCGATGCCCCTTGGGTCAAGTTCGGCATCGATCTGGCTCTCGGGGCGAAAACAGATACCTATGCCAATCCGGAGGAGCAGTTATTCCTGCCGAATAGAATGTTGGATCTGCTACCACGTACCACTCTACTCTATCCCAATGGTCGATCAACGCCACTCATCAGGGATACCAAAGAGTGGTTTCCGGCTAAGCCGGCCAGTATGGAACCTGCGGAGGAGGGCTGGCCTACACCTTTATTGGCTTCTATAGCTTTGCTGATAGTTTCTATTGCAGTAGCTGTTTGGGATGTTCGTCGCAAGGATATATGCTATGTATATGACTCTATCTTATTAGCCATTATGGGGTTATCGGGATGTGTTATTTTCATTCTGTCATTTTTCTCAGAACATCCGCATACCAACCCGAATTACAATCTTTTCCTGCTTCATCCCCTTCATCTGCTTATCGGGTTGCCTCTGACTGTGGTACCGCTCTTTCACCGAGCAGGCTTTGTCTATCATTTTATTAACTTTGCAGAGCTAAGTTTGATCGGTTTGGCAATATGGTTTTTGCCGCAACAAGTAGTGCTCCCGCTCTATGTGGCCGGCATTGCTCTATGGTTGCTTTCCGCTCGCTGGATATTGGTAAATAGATGGAGAAAGAACGTTCGG","6.70","-1.29","47501","MAKKYLSTLKVSAGLFSAILIVLLASGLLANAQTVSTETKDQGLQMSLLISSPSTEAVYTRYGHVAFRILNPVQGTDIAYNYGMFDYNEPNFMLRFVRGETDYYVEALYTSYYVEEYLRSGRGIVELVLNLTQEEIEKAERYLAWNIRPENKRYRYNIFYDNCATRLIEIIKETTGATLQIPHEGEERKWRQLIDECCTDAPWVKFGIDLALGAKTDTYANPEEQLFLPNRMLDLLPRTTLLYPNGRSTPLIRDTKEWFPAKPASMEPAEEGWPTPLLASIALLIVSIAVAVWDVRRKDICYVYDSILLAIMGLSGCVIFILSFFSEHPHTNPNYNLFLLHPLHLLIGLPLTVVPLFHRAGFVYHFINFAELSLIGLAIWFLPQQVVLPLYVAGIALWLLSARWILVNRWRKNVR","559275 558031","TIGR ID: PG0516","hypothetical protein","Inner membrane, Cytoplasm","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-32]?signal-peptide
tmhmm\"[15-35]?\"[273-293]?\"[303-323]?\"[337-357]?\"[362-382]?\"[386-406]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","","","Tue Feb 20 13:42:20 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 20 13:42:20 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Feb 20 13:42:20 MST 2001","34540332","","","","","","1","","","PG0516" "PG0471","562188","559309","2880","TTGTTTGCACCTCGCACCACGAATCTGAAGGATTTGCTGCTGGGGCTGTCTCCCTATAAAGAGCTTGACAGAACGGCCTTGCTATTCGAGCTATACAATACTTACAAAGAGATATGGCCTCAGGCGGAACCTTTCGATCAGTTTATTTTTTGGGGCGATATTATCCTGAAAGACTTTAATGAGATAGACAAACACCTCGTATCGGCCAAAGCCTTATACAGCAATCTGAAAGACTTTCGGGAGATGGAGAACGATTTCTCATTTTTGAGCGAAAGACAGGTAGCAGCCATTCGCAGTTTTTGGGAATCCTTTTCTCCAGCAAGCGGCCAAATGGAGAATGGATGTCAGCAGAGTTTTCTGGATTTCTGGAAGCTATTGTCCCCGCTTTACATTCGGTTCAACCAACGTCTTGCAGACCAAGGCAACGGATACCATGGGATGATCCTTCGCCATACAGTTGATCGCCTCCGGCAAAGAGAAACATCGGTACGAGAGCTGCTCTCATCTGCAGACAGAGGGGGGAATGCACATCCTGATAAATATGTCTTTGTCGGTTTGTTCGCCCTTTCTCCTGCCGAGGAATATATTCTCGTTCGTATGAAAGCGGAAGGCATATGTGATTTTTGCTTTGATGACGACCTCTCTCTATTGCATTCGGCAGGCAATCTTACCGGCACTATTCTGGATCATAACAAAGAGATTTTCGGGAAACAGACTCCGTGGCAAGAGTCTTCCGAAAATGGTCAAACAAGCTCATTGGAAGACAAACCGGCTCCTGATATCAGGATCATACGTACCGCCTCCGAGATTGTTCAGGCCAAACTTTTGCCACAGCTGATCGAGGAGTTATACCCTGAAGGCTATTCTGACAAAGAAGGAATAGAAACAGCTATCATTCTTCCCGATACAGGAATGTTGATGCCCGTATTGAACAGTCTGGCCGAGACTGTAGGACGTATCAATGTGACTATGGGCTATCCTCTCTCTCAAAGTGCCATTTCCATTTTTGTCGAGAAGTGGATCAGGGTACAGGCAGAAATCCGTCTTATTCAAAAAGTTCCTCATTTTCGGACAGATGCTGTTCTTGACTTGCTCAATAGTGTTCTTCTCACTCCCTTATTGACAGATCATTCGCGTGATCTCCTCTCGAATAGGGAGGTAACCAAGCAGTACTACGTACCGGAGGAAAGACTTTGGGGCGATGAACTGACCGATCTGCTTTTTAGCCGGCCGGATAGTGGGCAGCAGCTACTCGACCGGTTGTTCCTACTCCTTGAAAAAATTGCCGAAAGCATGCTCTTTCAGCCAGCCGATTCGGAGTATGACCAATCGGAGGAGACCAATAATATGGAGTTGGAGCAGATCTATCACTATCGCAATATGCTGAACAGGCTCAGAGGACTGGTCGAATCCTATGCCATGGATATGTCAGTTCGTTCTGCAGCTCTTCTGTTGCAAGGATTGGTATCCGGAGTGAGCATCCCATTCGAGGGAGAACCTCTGGTCGGCCTGCAAATCATGGGAATAGATCAAACGCGATCTTTGGATTTCAAACATCTGATCATTCTCTCTGTCAACGAGGGTAAACTCCCATCGCGTGTCTATGAAACGACAATGATACCCTACACATTGCGCAGAGGGTATGGACTTCCGGTCAATGAGGTAAACGAAGCCACTCAATCTTATGATTTTTTCCGTCTCATTCAGCGAGCCGAAAGTGTAACGATGCTGTACGATGCTCGTTCGGACCAGCTTGGGGGAGGAGAGGAAAGCCGTTATATCCGACAGATGCATTTCCTTTTCGATATGCCTCTAAAAGTACAGGAATTGCACCTGACTGGTTCGCTTCCACATAGTCCTGCTATATGTGTCAGGAAGGAAGGAGAAGTGCTGACGAGACTGCACCGATTCCTCGAATGCGACAACGAAGAATCACTCGATCCGGAAGAACGTCTATCCGCCCTTTCGGCCAGCAGCATCAATACCTATGTGGCTTGCCCTCTTCGTTTTTATTTTGAAAACGTCAGAGGGATACGAGAGGAGAATGCTTCCGATGAACTGATGGCCGCCAATGATTTCGGTACCGTGGTGCATCGTTCCATGGAGTTGATCTACAAGCCTTGTTGCGGTGGTGGGATAGTTTCTTCGGATATTTTATCTCGGTGGTTGGATCCGAAGAATGCAACTATCGCGAGGATAGTAAGGCAAGCATACACGGAAGAATATCTCCGATCGGCCAATACACAGGGAGCTTTGTCGGGATTGAATCATCTTTATTGCATCATGATAGAGAAGTATGTACGGCGGATCTTGGAGCATGACAAATCATTGGCTCCCTTTCGCTACATAGACTCGGAGCGCAGAGTCAAAGGCAGCTTCTCCCTTAGCAATGGTAGCCGGGTTCGGTTACACGGAATCATAGACCGCATTGATGAGTTGAATGAGGAATGTCGGCGCATAGTGGACTACAAAAGTGGAGATACCACCACAGAGCTTGGCTCATGGGATCTTATGTTCCAACACCCGATAGCAGGAAAAAGCAAAAAACATCCGACGGCCATAGCTCAAACTCTCTTATATGCTCTCATGGCCAAGATGCAAATGGAGAACGAAGGAGAGGGTTCCGAACTCCCTCTGTGTCCGACGATATATGGTTTTAAGGAGCTGTACAAGCAGAAAGAGGATTACACGGGTGTGGTCGTTCTCAAGGAAGTGGGGAAAGCAATTGAGCAGATTACGGATTTTGATCAAATTTGCGAAATGTTCGAAGAGAGGTTGCGAACTTGCTTGGACGAATTGTTCGATCCCGATATTCCTTTTACAGAAACCGAAGACATACGGACTTGCAGCTATTGCCCATTCGCAAGTTTATGCGGAAAA","4.80","-38.80","109792","LFAPRTTNLKDLLLGLSPYKELDRTALLFELYNTYKEIWPQAEPFDQFIFWGDIILKDFNEIDKHLVSAKALYSNLKDFREMENDFSFLSERQVAAIRSFWESFSPASGQMENGCQQSFLDFWKLLSPLYIRFNQRLADQGNGYHGMILRHTVDRLRQRETSVRELLSSADRGGNAHPDKYVFVGLFALSPAEEYILVRMKAEGICDFCFDDDLSLLHSAGNLTGTILDHNKEIFGKQTPWQESSENGQTSSLEDKPAPDIRIIRTASEIVQAKLLPQLIEELYPEGYSDKEGIETAIILPDTGMLMPVLNSLAETVGRINVTMGYPLSQSAISIFVEKWIRVQAEIRLIQKVPHFRTDAVLDLLNSVLLTPLLTDHSRDLLSNREVTKQYYVPEERLWGDELTDLLFSRPDSGQQLLDRLFLLLEKIAESMLFQPADSEYDQSEETNNMELEQIYHYRNMLNRLRGLVESYAMDMSVRSAALLLQGLVSGVSIPFEGEPLVGLQIMGIDQTRSLDFKHLIILSVNEGKLPSRVYETTMIPYTLRRGYGLPVNEVNEATQSYDFFRLIQRAESVTMLYDARSDQLGGGEESRYIRQMHFLFDMPLKVQELHLTGSLPHSPAICVRKEGEVLTRLHRFLECDNEESLDPEERLSALSASSINTYVACPLRFYFENVRGIREENASDELMAANDFGTVVHRSMELIYKPCCGGGIVSSDILSRWLDPKNATIARIVRQAYTEEYLRSANTQGALSGLNHLYCIMIEKYVRRILEHDKSLAPFRYIDSERRVKGSFSLSNGSRVRLHGIIDRIDELNEECRRIVDYKSGDTTTELGSWDLMFQHPIAGKSKKHPTAIAQTLLYALMAKMQMENEGEGSELPLCPTIYGFKELYKQKEDYTGVVVLKEVGKAIEQITDFDQICEMFEERLRTCLDELFDPDIPFTETEDIRTCSYCPFASLCGK","562329 559309","TIGR ID: PG0517","conserved hypothetical protein","Cytoplasm","Its nearest neighbor in the NR database is gi:29346467 from Bacteroides thetaiotaomicron VPI-5482.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 10:46:39 MDT 2001","","Thu Jun 14 10:46:39 MDT 2001","Thu Jun 14 10:46:39 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 10:46:39 MDT 2001","Thu Jun 14 10:46:39 MDT 2001","","","Thu Dec 4 10:35:44 2003","Thu Mar 3 10:15:58 2005","Tue Feb 20 13:43:39 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 3 10:15:58 2005","-52% similar to PDB:2GO2 Crystal structure of BbKI, a Kunitz-type kallikrein inhibitor (E_value = );","","","No significant hits to the Pfam 11.0 database","Wed Jun 20 11:33:53 MDT 2001","34540333","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Thu Mar 3 10:15:58 2005","","1","","","PG0517" "PG0472","563030","562308","723","ATGAAAAAGGCTCTTTTTAAAGATTGGCCTATACTCAGTCATCTTGCTCTGATACTGATTATTGGCTATCTCCTGATCTCTGTACTTCACTTAGCCCCTACTCTATTCGGGTACGGACAGGAAGGCTTGCCGTTGCTATTGGCGACAAGCTTATTCAGCGTCGTGGTATTCGGGGGAGGGGCTGTATGGCAAGCCTTTTTATTTTCTGACAGGCCTACATCTTTTTTGGGCCTACAACCGTATCAGATCGATTGGCGCAAAGCAGTACTGCTGTTACTCTCTTATGCCGGATGTCTTTTGGCCGTAGTATTAACGACCAAAGGTATAAAGCTCCTTCTGCCCTTTCTCCCTCCGGCTTGGCAAGAAGAAATCGACCGTAGCGGTGCCCATTATACAAGCCTGATAAAGGAGATGCTGCAGGGAGGCAAGGGTTGGGCTTTGCTTGCTATTGCAATAATACCGGGCATTACGGAAGAATTGTTTTTTAGAGGAGCCGTATTACGCTGGATGCGCCGTGTTACCCGCAATAGATGGCATGCTGCAGTTTGGCTGACTGCCATCGTTTTCAGCATTGCACATCTCGATCTGATGGGATTTTTTCCCCGAATCGTCTTGGGTGCTTATTTGGGTTATGTCTATTATCATACGCACAGTATATATGTTCCCATGGCTCTACATGTTTTGAATAATGCTATCGCCTTATGCTCCCTTTCCTTAGACAGA","10.30","8.81","26963","MKKALFKDWPILSHLALILIIGYLLISVLHLAPTLFGYGQEGLPLLLATSLFSVVVFGGGAVWQAFLFSDRPTSFLGLQPYQIDWRKAVLLLLSYAGCLLAVVLTTKGIKLLLPFLPPAWQEEIDRSGAHYTSLIKEMLQGGKGWALLAIAIIPGITEELFFRGAVLRWMRRVTRNRWHAAVWLTAIVFSIAHLDLMGFFPRIVLGAYLGYVYYHTHSIYVPMALHVLNNAIALCSLSLDR","563030 562308","TIGR ID: PG0518TIGR ID: PG0519","conserved hypothetical protein (possible membrane protein)","Inner membrane, Cytoplasm","Residues 43-239 show weak similarity (29%) to CT254, another conserved hypothetical protein. No other significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR003675
Family
Abortive infection protein
PF02517\"[145-237]TAbi


","BeTs to 6 clades of COG1266COG name: Predicted membrane proteinFunctional Class: SThe phylogenetic pattern of COG1266 is --T--qvC-BR-----o-in-Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Apr 17 13:20:47 MDT 2001","Tue Apr 17 13:25:42 MDT 2001","Thu Apr 5 19:22:38 MDT 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 20 15:00:21 MST 2001","-48% similar to PDB:2A65 Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters (E_value = );","","","Residues 145 to 237 (E-value = 5e-17) place PG0472 in the Abi family which is described as CAAX amino terminal protease family (PF02517)","Thu Apr 5 19:22:38 MDT 2001","34540335","","","","","","1","","","PG0519" "PG0474","565346","563712","1635","ATGGCAAAAGAAATCAAATTCGATATGGAATCTCGCGACCTTCTGAAGAAGGGCGTAGATGCACTGGCAAATGCCGTTAAAGTTACCCTCGGGCCGAAAGGTCGTAATGTTATCCTTAGCAAGACGTACGGAGCTCCGCACATTACCAAGGACGGTGTGAGCGTAGCGAAAGAGATAGAATTGGAGTGCCCGTTCGAGAACATGGGTGCCCAGTTGGTGAAAGAAGTAGCCTCCAAGACCAATGACGATGCCGGTGACGGTACGACTACGGCTACGATCCTCGCCCAGAGCATTATCGGCGTGGGTCTGAAGAACGTTACGGCAGGAGCCAATCCGATGGATTTGAAGCGTGGTATCGACAAGGCTGTAAAGGCTGTGGTAACTCACATTGCAGGTATGGCTAAGGAAGTGGGCGACGACTTCCAGAAGATCGAGCACGTAGCCAAGATCTCTGCCAACGGAGACGAAAACATCGGTAGCCTCATTGCCGAAGCCATGCGCAAGGTGAAGAAAGAAGGCGTTATCACGGTAGAAGAAGCCAAGGGAACCGACACTACGGTAGAAGTGGTGGAAGGTATGCAGTTCGACCGCGGCTACATCTCTCCCTACTTCGTAACGAACACGGATAAGATGGAGGTGCAAATGGAAAATCCTTTCATCCTCATCTACGACAAGAAAATATCCGTCCTGAAAGAGATGCTCCCGATCCTCGAACAAACGGTTCAGACGGGCAAGCCCCTCCTCATCATTGCAGAAGACATCGACAGCGAAGCACTCGCCACCTTGGTTGTAAACCGTCTGCGCGGCAGCCTCAAGATCTGTGCAGTGAAGGCTCCCGGATTCGGCGATCGTCGCAAGGCTATGCTCGAAGACATTGCTATCCTGACGGGCGGAACGGTTATCAGCGAAGAGACCGGTCTGAAGCTCGAAAATGCTACGATGGATATGCTCGGTACAGCTGAGAAAGTAACGGTTGATAAGGACAATACTACTATCGTTAACGGAGCCGGAAACAAAGAAGGCATCGCTTCACGTATCACGCAGATCAAAGCTCAGATCGAGAATACGACCAGCGACTACGACCGCGAAAAGCTGCAAGAACGTTTGGCCAAGCTCGCCGGCGGTGTAGCTGTTCTTTACGTGGGTGCTGCCAGCGAAGTGGAAATGAAGGAAAAGAAGGATCGCGTAGAAGATGCCTTGAGTGCAACGCGTGCTGCAATCGAAGAGGGTACAGTACCCGGTGGCGGTACGGCATACATTCGTGCCATAGCTGCTTTGGAAGGTCTCAAGGGTGAGAACGAAGACGAAACCACAGGTATCGAGATCGTGAAACGCGCCATCGAGGAGCCGCTTCGTCAGATCGTAGCGAACGCCGGTAAAGAGGGTGCCGTTGTGGTACAGAAGGTGAAAGAAGGCAAGGACGACTTCGGCTACAATGCCCGTACGGATGTTTTCGAAAACCTCTACACTACCGGTGTTATCGACCCGGCCAAAGTAACACGTGTAGCATTGGAAAATGCAGCGTCTATCGCAGGTATGTTCCTGACTACGGAGTGCGTTATCGCTGACAAGAAAGAAGATAATCCTGCCGCACCGGCCATGCCCGGAGGTATGGGAGGAATGGGCGGCATGATG","4.90","-15.34","58085","MAKEIKFDMESRDLLKKGVDALANAVKVTLGPKGRNVILSKTYGAPHITKDGVSVAKEIELECPFENMGAQLVKEVASKTNDDAGDGTTTATILAQSIIGVGLKNVTAGANPMDLKRGIDKAVKAVVTHIAGMAKEVGDDFQKIEHVAKISANGDENIGSLIAEAMRKVKKEGVITVEEAKGTDTTVEVVEGMQFDRGYISPYFVTNTDKMEVQMENPFILIYDKKISVLKEMLPILEQTVQTGKPLLIIAEDIDSEALATLVVNRLRGSLKICAVKAPGFGDRRKAMLEDIAILTGGTVISEETGLKLENATMDMLGTAEKVTVDKDNTTIVNGAGNKEGIASRITQIKAQIENTTSDYDREKLQERLAKLAGGVAVLYVGAASEVEMKEKKDRVEDALSATRAAIEEGTVPGGGTAYIRAIAALEGLKGENEDETTGIEIVKRAIEEPLRQIVANAGKEGAVVVQKVKEGKDDFGYNARTDVFENLYTTGVIDPAKVTRVALENAASIAGMFLTTECVIADKKEDNPAAPAMPGGMGGMGGMM","60 kD chaperonin (protein cpn60) (GroEL protein)","Maeda et al. (2000) show that B-cell epitopes are distributed throughout the Pg molecule and that highly conserved epitopes shared recognition with human hsp60 peptides.From Prosite PDOC00268: Chaperonins are proteins involved in the foldingof proteins or the assembly of oligomeric proteincomplexes. Their role seems to be to assist otherpolypeptides to maintain or assume conformationswhich permit their correct assembly intooligomeric structures. They are found in abundancein prokaryotes, chloroplasts and mitochondria.Chaperonins form oligomeric complexes and arecomposed of two different types of subunits: a 60Kd protein, known as cpn60 (groEL in bacteria) anda 10 Kd protein, known as cpn10 (groES inbacteria). The cpn60 protein shows weak ATPaseactivity and is a highly conserved protein ofabout 550 to 580 amino acid residues which hasbeen described by different names in differentspecies.TIGR ID: PG0520","60 kD chaperonin (protein cpn60) (GroEL protein) (heat shock protein 60)","Cytoplasm","This sequence is similar to CT110.Numerous significant hits in gapped BLAST to chaperonin/heat shock protein 60 groEL; e.g. residues 1-530 are 84% similar to AJ006516 of Bacteroides forsythus, residues 2-538 are 70% similar to AF145252 of Rhodothermus marinus, residues 2-537 are 64% similar to AP002999 of Mesorhizobium loti.PG0474 is essentially identical to chaperonin groEL of Porphyromonas gingivalis in GenBank (see gi:1075499). These sequences are similar to BT1829.","
InterPro
IPR001844
Family
Chaperonin Cpn60
PR00298\"[26-52]T\"[82-109]T\"[268-291]T\"[350-375]T\"[398-419]TCHAPERONIN60
PS00296\"[405-416]TCHAPERONINS_CPN60
InterPro
IPR002423
Family
Chaperonin Cpn60/TCP-1
PR00304\"[24-40]T\"[46-64]T\"[80-99]T\"[378-400]T\"[411-423]TTCOMPLEXTCP1
PTHR11353\"[2-545]TCpn60/TCP-1
PF00118\"[22-525]TCpn60_TCP1
InterPro
IPR008950
Domain
GroEL-like chaperone, ATPase
SSF48592\"[9-522]TGroEL-ATPase
InterPro
IPR012723
Family
chaperonin GroEL
TIGR02348\"[2-527]TGroEL
noIPR
unintegrated
unintegrated
G3DSA:1.10.560.10\"[392-525]TG3DSA:1.10.560.10
G3DSA:3.50.7.10\"[174-376]TG3DSA:3.50.7.10
PTHR11353:SF10\"[2-545]TPTHR11353:SF10
SSF52029\"[184-376]TSSF52029
SSF54849\"[136-191]TSSF54849


","BeTs to 17 clades of COG0459COG name: Chaperonin GroEL (HSP60 family)Functional Class: OThe phylogenetic pattern of COG0459 is AmTkYqvCebRhujgpolINxNumber of proteins in this genome belonging to this COG is 1","***** IPB001844 (Chaperonin cpn60 (60Kd subunit)) with a combined E-value of 1.1e-243. IPB001844A 23-77 IPB001844B 88-137 IPB001844C 168-222 IPB001844D 251-304 IPB001844E 345-396 IPB001844F 477-514 IPB001844F 431-468","Residues 182-409 are 88% similar to a (PROTEIN CHAPERONIN CHAPERONE ATP-BINDING CPN60 GROEL) protein domain (PD000354) which is seen in CH60_PORGI.Residues 419-527 are 99% similar to a (PROTEIN CHAPERONE ATP-BINDING CHAPERONIN CPN60 GROEL) protein domain (PD000184) which is seen in CH60_PORGI.Residues 2-181 are 90% similar to a (PROTEIN CHAPERONE ATP-BINDING CHAPERONIN CPN60 GROEL) protein domain (PD000186) which is seen in CH60_PORGI.Residues 390-525 are 27% similar to a (HSP-60) protein domain (PD210867) which is seen in O84609_CHLTR.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","Wed Mar 22 16:34:23 MST 2000","Mon Dec 8 16:24:06 2003","Wed Jun 6 14:08:45 MDT 2001","Mon Dec 8 16:24:06 2003","Tue Apr 17 12:38:35 MDT 2001","Tue Apr 17 12:38:35 MDT 2001","Tue Apr 17 12:38:35 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Apr 17 12:38:35 MDT 2001","-77% similar to PDB:1IOK CRYSTAL STRUCTURE OF CHAPERONIN-60 FROM PARACOCCUS DENITRIFICANS (E_value = 4.3E_177);-73% similar to PDB:1AON CRYSTAL STRUCTURE OF THE ASYMMETRIC CHAPERONIN COMPLEX GROEL/GROES/(ADP)7 (E_value = 1.3E_168);-73% similar to PDB:1GRU SOLUTION STRUCTURE OF GROES-ADP7-GROEL-ATP7 COMPLEX BY CRYO-EM (E_value = 1.3E_168);-73% similar to PDB:1MNF Domain motions in GroEL upon binding of an oligopeptide (E_value = 1.3E_168);-73% similar to PDB:1PCQ Crystal structure of groEL-groES (E_value = 1.3E_168);","","","Residues 22 to 525 (E-value = 3.4e-195) place PG0474 in the Cpn60_TCP1 family which is described as TCP-1/cpn60 chaperonin family (PF00118)","Tue Apr 17 12:38:35 MDT 2001","34540336","","Maeda H, Miyamoto M, Kokeguchi S, Kono T, Nishimura F, Takashiba S, MurayamaY.Epitope mapping of heat shock protein 60 (GroEL) from Porphyromonas gingivalis.FEMS Immunol Med Microbiol. 2000 Jul;28(3):219-24.PMID: 10865174","","Wed Jun 6 14:06:18 MDT 2001","","1","","","PG0520" "PG0475","565868","565602","267","ATGAACATCAAACCATTGGCAGACCGCGTACTTGTAAAGCCGGCTGCAGCAGAAGAAAAAACAGTGAGCGGGATCATTATTCCGGATTCGGCCAAAGAGAAACCTCTCAAGGGTGAAGTAATCGCTGTCGGGAACGGCACGAAAGACGAAGAGATGGTGCTCAAAGCAGGAGACACCGTACTCTACGGCAAATATGCCGGCACTGAAATAGAGCTGGAGGGTGAAAAATATATCATCATGCGCCAAAACGATGTCTTGGCAATCATC","4.80","-3.01","9595","MNIKPLADRVLVKPAAAEEKTVSGIIIPDSAKEKPLKGEVIAVGNGTKDEEMVLKAGDTVLYGKYAGTEIELEGEKYIIMRQNDVLAII","565940 565602","TIGR ID: PG0521","10 kDa chaperonin/heat shock protein (protein cpn10) (protein GroES)","Cytoplasm","Numerous significant hits in gapped BLAST to chaperonin/heat shock protein groES; e.g. residues 1-89 are 57% similar to L11654 of Zymomonas mobilis, residues 1-89 are 56% similar to U45241 of Lawsonia intracellularis, residues 1-89 are 62% similar to AF145252 of Rhodothermus marinus.","
InterPro
IPR001476
Family
Chaperonin Cpn10
PD000566\"[8-86]TChaprnin_Cpn10
PR00297\"[3-18]T\"[25-46]T\"[55-67]T\"[76-89]TCHAPERONIN10
G3DSA:2.30.33.40\"[1-89]TChaprnin_Cpn10
PTHR10772\"[1-89]TChaprnin_Cpn10
PF00166\"[2-89]TCpn10
PS00681\"[3-27]TCHAPERONINS_CPN10
InterPro
IPR011032
Domain
GroES-like
SSF50129\"[1-89]TGroES_like


","BeTs to 13 clades of COG0234COG name: Co-chaperonin GroES (HSP10)Functional Class: OThe phylogenetic pattern of COG0234 is ----yqvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB001476 (Chaperonins cpn10 (10 Kd subunit)) with a combined E-value of 5.1e-28. IPB001476A 3-46 IPB001476B 45-89","Residues 1-89 are identical to a (PROTEIN CHAPERONIN CHAPERONE CPN10 GROES HEAT SHOCK) protein domain (PD000566) which is seen in CH10_PORGI.","","Thu Jun 14 10:47:50 MDT 2001","","Thu Jun 14 10:47:50 MDT 2001","Thu Jun 14 10:47:50 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 10:47:50 MDT 2001","Thu Jun 14 10:47:50 MDT 2001","","","Wed Jun 6 15:20:47 MDT 2001","Wed Jun 20 11:32:47 MDT 2001","Wed Jun 6 15:20:47 MDT 2001","Wed Jun 20 11:26:38 MDT 2001","Wed Jun 20 11:26:38 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Jun 6 15:20:47 MDT 2001","-71% similar to PDB:1HX5 Crystal structure of M. tuberculosis chaperonin-10 (E_value = 8.9E_22);-71% similar to PDB:1P3H Crystal Structure of the Mycobacterium tuberculosis chaperonin 10 tetradecamer (E_value = 8.9E_22);-72% similar to PDB:1WE3 Crystal Structure of the Chaperonin Complex Cpn60/Cpn10/(ADP)7 from Thermus Thermophilus (E_value = 1.5E_21);-72% similar to PDB:1WF4 Crystal Structure of the Chaperonin Complex Cpn60/Cpn10/(ADP)7 from Thermus Thermophilus (E_value = 1.5E_21);-72% similar to PDB:1WNR Crystal structure of the Cpn10 from Thermus thermophilus HB8 (E_value = 1.5E_21);","","","Residues 2 to 89 (E-value = 6.1e-50) place PG0475 in the Cpn10 family which is described as Chaperonin 10 Kd subunit (PF00166)","Wed Jun 20 11:26:38 MDT 2001","34540337","","","","","","1","","","PG0521" "PG0476","566992","566087","906","ATGATAACGATCTTGGGGCCTACGGCATGCGGCAAGACTCGTCTGGCCGTAAGCCTCGCATATCGGTTGGAAACCGAGATCATCAGTGCCGACTCGCGACAGATATACCGTGGCATGGACATCGGCACAGGCAAAGACTTGGCCGACTATCAGGTGGGAGGGACTACAATCCCTTGCCACCTGATCGATATAAGACCGGCAGGGGACAAATACAACCTCTTTGCTTATCAGCACGACTTTCACCAAGCCTACGCATCGATCCTCGCTCGTGGCATGGATCCGATCCTCTGCGGAGGTACGGGTATGTATATCGAAGCCGTGCTCAAAGGCTACCACCTCCCCGATGTTCCGCCCAACCCGACGCTTCGTGATCGTCTGCAAGGAAAGAGTTTGACAGAGCTGACTCTTATACTGGCTGCATACGGCCCTCTGCACAATAAGACGGACGTGGACTCGGCACAGCGAGCTATCAGGGCTATCGAAATAGCCGAATACATCAAGAACAATCCGGTCGAAAGCACCGAGTTTCCTCCTATCGACAGTCTGATTATCGGTCTCGATCTGGATCGCGACACCCGACGCAAAAGGATAACGGACAGGCTCCATGCCCGTATGCACGAGGGTATGATAGAGGAAGTCAAGGGACTTCTCGACAGTGGCATTCCGGCCGAGGATCTGATCTATTACGGGCTGGAATACAAATTCGTCACCTTGTATCTGACAGGGCAGACGGACTACGAATCCATGTTTACCGGACTCGAAACGGCCATTCACCAATTCGCCAAACGCCAGATGACATGGTTCCGTGGCATGGAGCGTCGCGGATTCCTTATTCATTGGATAGATGCCCTGCTCCCTGCGGACGAACAGTGTGAAGCCGTCATGAAGCTCTACGGAGCCAACGGG","5.90","-6.01","33904","MITILGPTACGKTRLAVSLAYRLETEIISADSRQIYRGMDIGTGKDLADYQVGGTTIPCHLIDIRPAGDKYNLFAYQHDFHQAYASILARGMDPILCGGTGMYIEAVLKGYHLPDVPPNPTLRDRLQGKSLTELTLILAAYGPLHNKTDVDSAQRAIRAIEIAEYIKNNPVESTEFPPIDSLIIGLDLDRDTRRKRITDRLHARMHEGMIEEVKGLLDSGIPAEDLIYYGLEYKFVTLYLTGQTDYESMFTGLETAIHQFAKRQMTWFRGMERRGFLIHWIDALLPADEQCEAVMKLYGANG","566992 566087 [Delay by 117 632 118 0]","TIGR ID: PG0522","tRNA delta-2 isopentenylpyrophosphate transferase (IPP transferase)","Cytoplasm","Shares strong similarity with a number of prokaryotic tRNA delta(2)-isopentenylpyrophosphate transferases:38% similar to gb|AAC65611.1| (AE001238) tRNA delta(2)-isopentenylpyrophosphate transferase (miaA) in Treponema pallidum.34% similar to pir||S75554 tRNA delta-2-isopentenylpyrophosphate (IPP) transferase in Synechocystis sp. (strain PCC 6803).31% similar to dbj|BAB06085.1| (AP001515) tRNA isopentenylpyrophosphate transferase in Bacillus halodurans.28% similar to emb|CAB13617.1| (Z99113) tRNA isopentenylpyrophosphate transferase Bacillus subtilis.This sequence is similar to BT4323.","
InterPro
IPR002627
Family
tRNA isopentenyltransferase
PD004674\"[62-118]TIPPT
PTHR11088\"[32-282]TIPPT
PF01715\"[33-284]TIPPT
TIGR00174\"[1-286]TmiaA
InterPro
IPR011593
Domain
Isopentenyl transferase-like
PD005388\"[4-56]TIPPtrans_like
noIPR
unintegrated
unintegrated
PTHR11088:SF21\"[32-282]TPTHR11088:SF21
SSF52540\"[1-298]TSSF52540


","BeTs to 11 clades of COG0324COG name: tRNA delta(2)-isopentenylpyrophosphate transferaseFunctional Class: JThe phylogenetic pattern of COG0324 is ----yqvcebrhuj--olinxNumber of proteins in this genome belonging to this COG is 2","***** PF01715 (IPP transferase) with a combined E-value of 9.9e-37. PF01715A 11-63 PF01715B 91-106 PF01715C 133-168 PF01715D 193-216 PF01715E 257-269","Residues 34-281 are 35% similar to a (TRANSFERASE TRNA) protein domain (PD004674) which is seen in MIAA_TREPA.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Mar 14 16:03:38 MST 2001","Mon Jan 5 12:32:11 2004","Wed Mar 14 16:03:38 MST 2001","Thu Feb 22 15:48:21 MST 2001","Thu Feb 22 15:48:21 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1 to 280 share 30% identity with PG0310, a tRNA delta-2 isopentenylpyrophosphate transferase. ","Thu Feb 22 15:48:21 MST 2001","Thu Feb 22 15:48:21 MST 2001","-55% similar to PDB:1WX9 Solution Structure of the N-terminal Ubiquitin-like Domain in the Human BAT3 Protein (E_value = );-57% similar to PDB:1UM8 Crystal structure of helicobacter pylori ClpX (E_value = );-64% similar to PDB:1PZ1 Structure of NADPH-dependent family 11 aldo-keto reductase AKR11B(holo) (E_value = );-52% similar to PDB:1E4O PHOSPHORYLASE RECOGNITION AND PHOSPHOROLYSIS OF ITS OLIGOSACCHARIDE SUBSTRATE: ANSWERS TO A LONG OUTSTANDING QUESTION (E_value = );-52% similar to PDB:1L5V Crystal Structure of the Maltodextrin Phosphorylase complexed with Glucose-1-phosphate (E_value = );","","","Residues 33 to 284 (E-value = 1.8e-30) place PG0476 in the IPPT family which is described as IPP transferase (PF01715)","Wed Mar 14 16:03:38 MST 2001","34540338","","","","","","1","","","PG0522" "PG0477","568485","566992","1494","ATGGCTGTCTTCATCAATGAAGTTTCCAGGACGTTCGGCGAATATCTTCTTATTCCCGGCCTCACTACAGAACAGTGCACTCCCCAAAACATCTCTCTTCAGACTCCTCTCATTAAGTTCAATCGCGATGAGAGTCCCCGTATCAAGCTGAATATCCCGTTTGTTTCGGCCATCATGCAGTCGGTCTCCAATGATACGCTGGCCATCGAATTGGCACGCAACGGGGGACTTTCGTTTATCTTCGGATCGCAGAGCATAGAGAGTCAGGCCGAAATGGTTCGTCGTGTAAAGAAATTCAAGGCCGGATTTGTCACCAGCGATTCCAATCTCAGACCGGACAATACGCTGGCCGATGTATTGGATCTGGTCAAAAGGACAGGACATAATAATATAGGTATCACTCACGACGGTTCGTCCAATGGCCGTCTGATGGGTATCGTCACGAGCAGAGACTATCGCGTCAGCACGGACTCACCCTCGAAGCCGGTCAAAGATTTTATGACGCCGTTCGAGAGACTTACGGTGGGCAAGGTCGGTATTACGCTGAGCGAAGCCAACGATATTATTTGGGAAAACAAACTCAATACGCTGCCGATCATCGACGAAAATCAGAATCTGCAGTATTTCGTCTTCCGTAAAGATTACGACAGCCACAAGAACAATCCGCTCGAACTCTCCAACTACACGGACAAGACCCTCCTCGTGGGTGCCGGTATCAATACACGCGACTATAAGGAGCGAGTACCTGCACTGGTGGAGGCCGGTGTGGATGTGGTGTGCATCGACTCATCGGACGGCTATTCCGACTGGCAGAGCAATACGATCCGTTGGATCAAGGAGAAATACGGGGACAGTTTGCCCGTAGGTGCAGGGAATGTGGTCGATCGCGATGGGTTCAACTTCTTGACCGAGGCCGGTGCGGACTTCATCAAAGTAGGGATCGGAGGAGGCTCCATCTGTATCACACGTGAGCAGAAAGGGATCGGTCGCGGTCAGGCAACGGCTGTAATAGACGTAGCCAAGGCACGTGACGACTATTACCGACGAACGGGCACTTACGTTCCCATCTGTAGCGATGGAGGGCTCGTACATGACTACCACATGGTGCTGGCATTGGCCATGGGTGCCGATTTCCTGATGATGGGACGCTATTTCGCTCGATTCGACGAGTCGCCGACCAAGAAGATGAAGATAGGCAGCAATATCGTCAAAGAATACTGGGGCGAAGGATCGAACCGCGCTCAGAACTGGCAACGCTACGACAGCGGCGGCACCGAGACGCTCAAGTTCGAAGAAGGAGTGGACAGCTACGTTCCATACGCCGGTAAGATGAAGGACAACCTGCTCATCACACTCGGCAAGATCAAGGCTACGATGTGCAGTTGCGGTGTCATTACCATTCCCGAGCTGCAAGAGAAAGCCAAGATTACCCTCGTGAGCAGCACCAGTATCGTCGAAGGCGGTGCTCACGACGTCATACTCAAAGATCGCGGA","6.30","-2.80","54998","MAVFINEVSRTFGEYLLIPGLTTEQCTPQNISLQTPLIKFNRDESPRIKLNIPFVSAIMQSVSNDTLAIELARNGGLSFIFGSQSIESQAEMVRRVKKFKAGFVTSDSNLRPDNTLADVLDLVKRTGHNNIGITHDGSSNGRLMGIVTSRDYRVSTDSPSKPVKDFMTPFERLTVGKVGITLSEANDIIWENKLNTLPIIDENQNLQYFVFRKDYDSHKNNPLELSNYTDKTLLVGAGINTRDYKERVPALVEAGVDVVCIDSSDGYSDWQSNTIRWIKEKYGDSLPVGAGNVVDRDGFNFLTEAGADFIKVGIGGGSICITREQKGIGRGQATAVIDVAKARDDYYRRTGTYVPICSDGGLVHDYHMVLALAMGADFLMMGRYFARFDESPTKKMKIGSNIVKEYWGEGSNRAQNWQRYDSGGTETLKFEEGVDSYVPYAGKMKDNLLITLGKIKATMCSCGVITIPELQEKAKITLVSSTSIVEGGAHDVILKDRG","568632 566992","TIGR ID: PG0523","inosine-5'-monophosphate dehydrogenase (IMP-dehydrogenase)","Cytoplasm, Outer membrane","Very strong similarity to a variety of IMP-dehydrogenases.Residues 1 to 497 share 65% identity with gb|AAB01581.1| (L18917), an inosine monophosphate dehydrogenase in Tritrichomonas foetus.Residues 11 to 492 share 35% identity with gb|AAC07779.1| (AE000768), an inosine monophosphate dehydrogenase in Aquifex aeolicus.Residues 11 to 494 share 35% identity with gb|AAD36418.1|AE001789_3 (AE001789), an inosine-5'-monophosphate dehydrogenase in Thermotoga maritima.","
InterPro
IPR000644
Domain
Cystathionine-beta-synthase
PF00571\"[110-214]TCBS
SM00116\"[102-157]T\"[172-220]TCBS
InterPro
IPR001093
Family
IMP dehydrogenase/GMP reductase
PTHR11911:SF6\"[1-493]TIMP_DH_GMPRtase
PF00478\"[10-490]TIMPDH
PS00487\"[310-322]TIMP_DH_GMP_RED
InterPro
IPR013785
Domain
Aldolase-type TIM barrel
G3DSA:3.20.20.70\"[5-497]TAldolase_TIM
noIPR
unintegrated
unintegrated
PIRSF000130\"[18-498]TIMPDH
PTHR11911\"[1-493]TPTHR11911
SSF51412\"[2-484]TSSF51412
SSF54631\"[101-153]T\"[157-236]TSSF54631


","BeTs to 12 clades of COG0516COG name: IMP dehydrogenase/GMP reductaseFunctional Class: FThe phylogenetic pattern of COG0516 is -MTKYQVcEBRHUJ--O--n-Number of proteins in this genome belonging to this COG is 1","***** IPB001093 (Inosine-5'-monophosphate (IMP) binding domain) with a combined E-value of 5.8e-62. IPB001093B 45-97 IPB001093C 231-276 IPB001093D 302-336 IPB001093E 366-415 IPB001093G 431-453 IPB001093H 475-492","Residues 275-392 are 74% similar to a (OXIDOREDUCTASE PROTEIN DEHYDROGENASE BIOSYNTHESIS NAD) protein domain (PD000662) which is seen in IMDH_TRIFO.Residues 393-497 are 71% similar to a (INOSINE-5'-MONOPHOSPHATE DEHYDROGENASE EC 1.1.1.205 IMP) protein domain (PD044384) which is seen in IMDH_TRIFO.Residues 11-99 are 65% similar to a (DEHYDROGENASE INOSINE-5'-MONOPHOSPHATE OXIDOREDUCTASE) protein domain (PD002050) which is seen in IMDH_TRIFO.Residues 110-188 are 44% similar to a (PROTEIN CBS DOMAIN DEHYDROGENASE REPEAT) protein domain (PD000251) which is seen in IMDH_TRIFO.Residues 191-271 are 66% similar to a (DEHYDROGENASE INOSINE-5'-MONOPHOSPHATE OXIDOREDUCTASE) protein domain (PD001575) which is seen in IMDH_TRIFO.","","Thu Jun 14 10:48:29 MDT 2001","","Thu Jun 14 10:48:29 MDT 2001","Thu Jun 14 10:48:29 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 10:48:29 MDT 2001","Thu Jun 14 10:48:29 MDT 2001","","","Wed Jun 20 11:25:29 MDT 2001","Wed Jun 20 11:25:29 MDT 2001","Fri Mar 9 15:45:45 MST 2001","Wed Jun 20 11:25:29 MDT 2001","Wed Jun 20 11:25:29 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 22 15:39:12 MST 2001","-79% similar to PDB:1AK5 INOSINE MONOPHOSPHATE DEHYDROGENASE (IMPDH) FROM TRITRICHOMONAS FOETUS (E_value = );-79% similar to PDB:1ME7 Inosine Monophosphate Dehydrogenase (IMPDH) From Tritrichomonas Foetus with RVP and MOA bound (E_value = );-79% similar to PDB:1ME8 Inosine Monophosphate Dehydrogenase (IMPDH) From Tritrichomonas Foetus with RVP bound (E_value = );-79% similar to PDB:1ME9 Inosine Monophosphate Dehydrogenase (IMPDH) From Tritrichomonas Foetus with IMP bound (E_value = );-79% similar to PDB:1MEH Inosine Monophosphate Dehydrogenase (IMPDH) From Tritrichomonas Foetus with IMP and MOA bound (E_value = );","","","Residues 8 to 490 (E-value = 2.6e-119) place PG0477 in the IMPDH family which is described as IMP dehydrogenase / GMP reductase domain (PF00478)","Wed Jun 20 11:21:32 MDT 2001","34540339","","","","","","1","","","PG0523" "PG0478","568740","569021","282","GTGGGGCATGCTGCTCATATTGCCGTCTCGGTTCCAAAATCGGCTCCATTGTCGTTCGTAAAAACGTGGCGCGAGAAAATTTTCGCTTTGGCGCGTAAATTTTTTGTTTCCCGAACCAAAACGGAAAAAATCTCGCGCGTGTTTTCGAGAATTTACGAACCGCAATCGGAGCATTTCCGGCGCGTAAATTTGCCTCGGATAGCCTTATCGCGGTTCGTCGGATGCCTCATTTCTCATTTTGATGTGCCGGCATCGGGCAAGAGCTGTCGTATTTGCCTCTTT","11.60","12.80","10715","VGHAAHIAVSVPKSAPLSFVKTWREKIFALARKFFVSRTKTEKISRVFSRIYEPQSEHFRRVNLPRIALSRFVGCLISHFDVPASGKSCRICLF","568740 569021 [Shorter 634 44 20]","TIGR ID: PG0524","hypothetical protein (possible ATPase subunits of ABC transporters)","Periplasm, Cytoplasm","No significant hits to gapped BLAST.","
InterPro
IPR012456
Family
Protein of unknown function DUF1661
PF07877\"[30-60]TDUF1661


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Apr 5 19:34:33 MDT 2001","Fri Jan 19 12:57:27 MST 2001","Fri Jan 19 12:57:27 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 17-60 are 59% similar to PG0068, a conserved hypothetical protein.","Mon Apr 2 14:34:05 MDT 2001","Tue Feb 20 13:50:03 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Apr 2 14:34:05 MDT 2001","34540340","","","","","","1","","","PG0524" "PG0479","569140","570756","1617","ATGGCAGATACTAAGTATATCTTCGTGACCGGTGGTGTGGTTTCTTCTCTTGGAAAAGGCATCGTAGCAGCATCTCTCGGCAAACTCCTCCAAGCTCGCGGTTTCAACGTAGCTCTTCAGAAGTTCGACCCCTATATCAATATCGATCCCGGTACGCTCAATCCTTATGAGCACGGCGAATGCTATGTCACCGAGGACGGACATGAGGCCGATTTGGATCTCGGCCACTATGAGCGTTTCCTCAATACGCCCACTACTCGTGCCAATAATATCACGACAGGCAGGATCTATCAGAACGTAATCCGCAAGGAACGCAAGGGCGAGTACTTGGGCAAGACCGTGCAAGTGGTGCCTCATATTACGGATGAGATCAAGCGCAACGTCAAACTCCTGGGACAAAAGAGTCAGTACGACTTTGTCATCACAGAGATAGGCGGTACGGTAGGAGACATCGAATCCCTACCCTTCCTTGAAAGCGTGCGTCAGCTCAAGTGGGAGTTGGGGCAGAATTGCCTCTGCGTTCACTTGACCTATGTACCCTACATTGCTGCTGCCGGCGAGGTGAAGACCAAGCCGACTCAGCACTCCGTGAAGCAGTTGCAGGAAGTGGGTATTCAGCCCGACATCCTTGTATTGAGAACGGAGCACGAGCTTCAGCCCGACATTTTGAAGAAGGTAGCCCTGTTCTGCAACGTGGCTCCCGATTCGGTGGTACAGAGTGTGGACGTGCCTACTATCTATGAGGTGCCTCTGGTCTTGCAGCAGCAGCATATGGACGAGACGGTACTTCGGAAAGTGGGGCTGCAAGTGGGACCTGTGCCCGAGATGCGTCAGTGGCATGAATTTTTGGAAATGAAGCATACGGCCCGAGAAACGGTTACGATCGCTTTGGTGGGTAAGTATGTGGAGCTTCAGGATGCGTACAAGTCCATAGACGAATCGCTGATGCAGGCGGCTATATATAATAGGAAGAAGCTGAACCTCATATCCGTTCACAGCGAAAAGGTGACGGAGGCTAACGTAGCCGAGACCCTGAAAGATATGGACGGCATCGTGATCGCCCCCGGATTCGGTTCCAGAGGGGTCGAAGGCAAACTCATAGCACTGAAATATGCGCGTGAGAACGATCTGCCCACACTGGGTATCTGTCTGGGTATGCAGTGTATGGTGATCGAATATGCTCGCAATGTATTGGGCTTCAAGGACGCCAATACGACGGAGATCGAATCCAATATCGAGCACAAGGTCATCGACCTGATGGACGAACAGAAGACGGTTACGGATATGGGCGGTTCCATGCGTTTGGGCGCATACGACTGTGCTCTGCGCAAAGGATCGAAATTGGCTGCTGCCTATGGCAAGGAATTCGTGCGCGAACGCCATCGCCATCGCTTCGAATTCAACAGCCAGTATCGCGAAGCTTTCGAAAAAGCCGGTATGCAATGTGTGGGCGAGAATCCGGAGACGGGCTTGGTAGAAGCCGTGGAAGTGCCTGCCTGCCGCTGGTTCGTGGGGGTACAGTTCCATCCCGAATACAATAGTACGGTGGTCAATCCCAACCCCTTGTTCATGGCTTTCATTCGTGAAGCAATCAAAACGAGAAAAAAAGATAAAGAA","6.50","-4.76","60509","MADTKYIFVTGGVVSSLGKGIVAASLGKLLQARGFNVALQKFDPYINIDPGTLNPYEHGECYVTEDGHEADLDLGHYERFLNTPTTRANNITTGRIYQNVIRKERKGEYLGKTVQVVPHITDEIKRNVKLLGQKSQYDFVITEIGGTVGDIESLPFLESVRQLKWELGQNCLCVHLTYVPYIAAAGEVKTKPTQHSVKQLQEVGIQPDILVLRTEHELQPDILKKVALFCNVAPDSVVQSVDVPTIYEVPLVLQQQHMDETVLRKVGLQVGPVPEMRQWHEFLEMKHTARETVTIALVGKYVELQDAYKSIDESLMQAAIYNRKKLNLISVHSEKVTEANVAETLKDMDGIVIAPGFGSRGVEGKLIALKYARENDLPTLGICLGMQCMVIEYARNVLGFKDANTTEIESNIEHKVIDLMDEQKTVTDMGGSMRLGAYDCALRKGSKLAAAYGKEFVRERHRHRFEFNSQYREAFEKAGMQCVGENPETGLVEAVEVPACRWFVGVQFHPEYNSTVVNPNPLFMAFIREAIKTRKKDKE","568978 570756 [Bad Olap 633 44 3]","TIGR ID: PG0525","CTP synthetase (UTP ammonia ligase)","Cytoplasm, Periplasm","Numerous significant hits in gapped BLAST to CTP synthase; e.g. residues 4-532 are 53% similar to M22039 of Bacillus subtilis, residues 293-390 are 29% similar to gi3025223 of Staphylococcus aureus, residues 4-532 are 53% similar to AP001520 of Bacillus halodurans.This sequence is similar to BT0590.","
InterPro
IPR000991
Domain
Glutamine amidotransferase class-I
PF00117\"[303-529]TGATase
InterPro
IPR004468
Family
CTP synthase
PTHR11550\"[119-531]TPyrG_synth
PF06418\"[4-279]TCTP_synth_N
TIGR00337\"[1-529]TPyrG
InterPro
IPR011702
Domain
Glutamine amidotransferase superfamily
PR00096\"[351-360]T\"[378-389]TGATASE
InterPro
IPR012998
Active_site
Glutamine amidotransferase, class I, active site
PS00442\"[378-389]TGATASE_TYPE_I
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[2-288]TG3DSA:3.40.50.300
G3DSA:3.40.50.880\"[289-539]TG3DSA:3.40.50.880
SSF52317\"[290-534]TSSF52317
SSF52540\"[3-273]TSSF52540


","BeTs to 16 clades of COG0504COG name: CTP synthase (UTP-ammonia lyase)Functional Class: FThe phylogenetic pattern of COG0504 is amtkYqvcebrhuj--olinxNumber of proteins in this genome belonging to this COG is 1","***** IPB000991 (Glutamine amidotransferase class-I) with a combined E-value of 3.7e-11. IPB000991A 378-387 IPB000991B 502-513","Residues 391-532 are 41% similar to a (CTP SYNTHASE SYNTHETASE LIGASE) protein domain (PD002477) which is seen in O67353_AQUAE.Residues 4-387 are 56% similar to a (CTP SYNTHASE LIGASE SYNTHETASE) protein domain (PD002309) which is seen in PYRG_BACSU.","","Thu Jun 14 10:49:19 MDT 2001","","Thu Jun 14 10:49:19 MDT 2001","Thu Jun 14 10:49:19 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 10:49:19 MDT 2001","Thu Jun 14 10:49:19 MDT 2001","","","Wed Mar 22 16:54:28 MST 2000","Wed Jul 30 14:24:23 2008","Wed May 23 11:29:26 MDT 2001","Wed Jun 20 11:15:47 MDT 2001","Wed Jun 20 11:15:47 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Jul 30 14:24:23 2008","-68% similar to PDB:1VCO Crystal Structure of T.th. HB8 CTP synthetase complex with Glutamine (E_value = 3.9E_146);-68% similar to PDB:1VCM Crystal Structure of T.th. HB8 CTP synthetase (E_value = 5.1E_146);-68% similar to PDB:1VCN Crystal Structure of T.th. HB8 CTP synthetase complex with Sulfate anion (E_value = 5.1E_146);-66% similar to PDB:1S1M Crystal Structure of E. Coli CTP Synthetase (E_value = 2.0E_142);-66% similar to PDB:2AD5 Mechanisms of feedback regulation and drug resistance of CTP synthetases: structure of the E. coli CTPS/CTP complex at 2.8-Angstrom resolution. (E_value = 2.0E_142);","","","Residues 4 to 281 (E-value = 5.5e-200) place PG0479 in the CTP_synth_N family which is described as CTP synthase N-terminus (PF06418)Residues 303 to 529 (E-value = 2e-55) place PG0479 in the GATase family which is described as Glutamine amidotransferase class-I (PF00117)","Tue Dec 2 17:01:27 2003","34540341","","","","","","1","","","PG0525" "PG0480","570887","572767","1881","ATGGATAAAAATACAGTTATAGGTTTAGTTCTGATCGGACTGGTGATCTTTGGGTTTTCATGGCTCAATCGTCCCGATCCGCAGGAAATAGAAGCGCAGCGTAAGGCTGCGATAGAAGCAGCTCGGCAGGATTCCATAGCGAAAGCCGAAGCCGAACTCCTTGCAGCCCGAACCCAGGGGGCCACGCCCGATTCGATCAAACAGGCAGCCGGATATAATCAGTATGGACTACTGGCAGCCGCGACAGCCGGTGCAGAGGAGCAGGTGGAGCTGGCCAACGGCAAGATCGCTCTCAAGCTCAGTACCAAGGGGGGAGCTATCCGGGAAGTTTTGCTTCGGGACTATAAAACGCACGATGGCAAACCTCTCTATCTTTTCCGAGAAGGAGAGTCGGATTTCAACCTGCCTCTGCGAACCGTGGACAACAGGCTGGTCGATACACGCGATCTGTACTTTTCTCCCATCAGCCGAACGGATTCCTCCGTTGTGATGCGTCTGGCTGTGGACAGTGCTTCTTATCTTGATTTGGCCTACGTCCTCCTTCCGGATGACTACCGCTTGCGAATGACGGTAAGCGGACAGAACTTGCAATCGCTTTTCCCTGCCAATATGACGATGCAGGACCTAGAATGGTCGCAGCGCATTCGCCGTCAGGAGAAATCATGGAAGTTTGAGAATCAATATACCTCTATTTATTATAAGTATTCGGGCGATGAGGTGGATCGTCTGAGCGACAGTAAGCAGGAAGACAAGAAGACTTTGGAGGAGCCGTTGCATTGGGTGTCTTTCAAGGATAAGTACTTCGCCTCCGTTTTGGTGTGCGATAGTTATTTCGAAAACAATAAACTGGCGCAGAAGACGGCAGCAGCCGGGTCCGACTATCTGAAGAATTGTACCATGTCTGCCACCTTTCCGTTGGATGTTCGCTCGGGAACAAAAGCCAGATTCACTTTCTTCTTCGGCCCGCTCAAATACAATATGCTACGCGCTTACGACAAAGGGATGAAAGCCGAGGACAACCTCGATCTCGATCACTTGGTCTACTTGGGTGCCAGTATCTTCCGATGGATCAATCGTTATATGATCATTCCGGCCTCCACATTCCTGCAGCAGTATTTTAGCAACTGGGGGCTGATCATTCTTTTGCTCACGCTGGGGATCAAACTCCTCATCTCTCCTCTCGCTTACAAGGGGTATCTCTCCTCTGCCAAAATGCGATTGCTACGGCCGCAGGTACAAGAGATCAATGCCAAGTACCCGGGCAAGGATCAGGAATCCATGATGAAGCGGCAGTCTGCTACCATGAATCTCTATCGTGCGGCCGGTGCAGGTCCGATGAGTGGGTGCTTGCCTATGCTCTTGCAGTTCCCTTTCCTCATAGCCATGTACATGTATTTCCCTACGACTATCGACATTCGTCAGCAGAGTTTCCTCTGGGCGGAAGACCTCTCCTCCTATGATGCTGTTTTCAGCTGGACGGCCGATATTCCTTTGTTGTCTCAGTTCTATGGCAATCACGTCAGTCTCTTCTGCCTGCTCATGTCCATTTCCAATATCCTCTATATCCGCTATACGATGAATCAGTCGGATACGGGACAGGAGGGTATGGCTATGCTCAAATGGATGCCTTATATCACTACGGTGATGTTCCTGTTCTTCTTCAATCAGAATGCATCGGGGCTTTGCTACTATTATTTCCTCTCTTCTATTATTACTGTCATCCAGTACATGTCTTCACGTTTTATCATCAACGAAGAGAAGCTGATGGCTAAGTTGGAAGCGAACAAGACGAAGCCACGAAAGAAATCGAAATGGATGGCAAGACTCGAAGAGGCACAGCGGCAGCAGGAAGCGATGCGACGCCAACAACAAAAGAGAAAA","9.80","12.77","72001","MDKNTVIGLVLIGLVIFGFSWLNRPDPQEIEAQRKAAIEAARQDSIAKAEAELLAARTQGATPDSIKQAAGYNQYGLLAAATAGAEEQVELANGKIALKLSTKGGAIREVLLRDYKTHDGKPLYLFREGESDFNLPLRTVDNRLVDTRDLYFSPISRTDSSVVMRLAVDSASYLDLAYVLLPDDYRLRMTVSGQNLQSLFPANMTMQDLEWSQRIRRQEKSWKFENQYTSIYYKYSGDEVDRLSDSKQEDKKTLEEPLHWVSFKDKYFASVLVCDSYFENNKLAQKTAAAGSDYLKNCTMSATFPLDVRSGTKARFTFFFGPLKYNMLRAYDKGMKAEDNLDLDHLVYLGASIFRWINRYMIIPASTFLQQYFSNWGLIILLLTLGIKLLISPLAYKGYLSSAKMRLLRPQVQEINAKYPGKDQESMMKRQSATMNLYRAAGAGPMSGCLPMLLQFPFLIAMYMYFPTTIDIRQQSFLWAEDLSSYDAVFSWTADIPLLSQFYGNHVSLFCLLMSISNILYIRYTMNQSDTGQEGMAMLKWMPYITTVMFLFFFNQNASGLCYYYFLSSIITVIQYMSSRFIINEEKLMAKLEANKTKPRKKSKWMARLEEAQRQQEAMRRQQQKRK","570887 572767","TIGR ID: PG0526","60 kDa inner membrane protein","Inner membrane, Periplasm","Numerous significant hits to 60 kDa inner membrane proteins in gapped BLAST; e.g. residues 305-600 are 27% similar to gb|AAD18459.1| 60 kDa inner membrane protein of Chlamydophila pneumoniae CWL029, residues 301-598 are 27% similar to gb|AAC67844.1| 60kDa inner membrane protein of Chlamydia trachomatis, residues 88-587 are 23% similar to sp|P29431|60IM_BUCAP 60 kDa inner-membrane protein homolog of Buchnera aphidicola (Schizaphis graminum).This sequence is similar to BT0589.","
InterPro
IPR001708
Family
60 kDa inner membrane insertion protein
PR00701\"[94-115]T\"[259-274]T\"[441-464]T60KDINNERMP
PTHR12428\"[326-487]T\"[508-608]TInnermemb_insert
PF02096\"[374-582]T60KD_IMP
noIPR
unintegrated
unintegrated
PTHR12428:SF8\"[326-487]T\"[508-608]TPTHR12428:SF8


","BeTs to 12 clades of COG0706COG name: Inner membrane proteins, SpoIIIJ familyFunctional Class: SThe phylogenetic pattern of COG0706 is ----yqvceBrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** PR00701 (60Kd inner membrane protein signature) with a combined E-value of 8.4e-12. PR00701B 94-115 PR00701E 259-274 PR00701G 441-464 PR00701I 547-570","Residues 401-575 are 34% similar to a (PROTEIN MEMBRANE INNER TRANSMEMBRANE INNER-MEMBRANE) protein domain (PD002157) which is seen in P97041_LEPIN.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Mar 22 11:34:22 MST 2000","Tue Dec 2 16:59:56 2003","Tue Mar 27 14:24:32 MST 2001","Tue Mar 27 14:24:32 MST 2001","Tue Mar 27 14:24:32 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","Residues 374 to 582 (E-value = 8.3e-44) place PG0480 in the 60KD_IMP family which is described as 60Kd inner membrane protein (PF02096)","Tue Mar 27 14:24:32 MST 2001","34540342","","","","","","1","","","PG0526" "PG0481","572861","574741","1881","ATGGAACCTCTGAAACATGAATGCGGTATCGCCATGGTGCGACTGCGCAAACCGCTGAGTTATTATCACGATAAGTATGGCACATGGATGTATGGCCTGAACAAGCTATACCTCCTGATGGAGAAGCAGCACAATCGAGGTCAGGAAGGTGCCGGGCTCGCTGTGGTGAAGCTCAACAGCCGTCCCGGAGAAGAATACCTCTTCAGAGAAAGAGCACTTGGGGCAAATGCCATCTCGGAGATATTCGACTCGGTACACAAGGATTTTCAGGCTTATTCTCGAGAAGAGCTGGGCGATGCCGAATTTGCTGCCTCTCAGATACCGTATGCCGGAGAGTGCTACATGGGACACTTGCGCTACAGCACTACCGGAAAGAGCGGTCTGACTTTCGTCCATCCGATGATACGCCGCAGCAACTGGCGTGCCAAGTGCTTGTCCATTTGCGGCAATTTCAATCTGACCAATGTGGATGGCATCTTCGACGAAATTACCTCTGTCGGACAGCATCCGCGCAATATGTCCGATACGCATATCCTGCTGGAGCAGATCGGTCATCGTCTGGATCGCGAGGTGGAGCGTTTGTTCCGTATCGGGAAAGAACAGAATCTGAAAGGAATGGACATCACGCATTTTATAGAAGAGCGTATCGATTTGTCCAATGTGCTCAAGAAGTGCAGTCCCTTCTGGGATGGCGGATATGTCATGTGCGGCCTCACCGGAAGTGGAGAGAGCTATGCAGTGCGCGATCCTTGGGGCATCCGACCTGCATTCTATTATATAGACGATGAGATCGTGGTCACGGCCTCGGAGCGTCCCGTTATCCAAACTGTGATGAATCTGTCGGCAGAGGCCGTTCGGGAGTTGATGCCCGGAGAAGCTATCTTTGTCAATAGCAAGGGAGAACCTCGTATCGAGCGTATCTTGGAGACTAAGAATTATCAGGCCTGTTCGTTCGAGCGTATCTATTTCTCTCGTGGCAGTGATCAGGATATATATCGTGAGAGAAAGGCTCTGGGGTATCTGCTTTCGGAACGCATCCTCCGAGCGATCGATTACGACATCTCCCATACTGTCTTTTCATTCATCCCGAATACAGCCGAAGTGGCATATTATGGTATGTTGGAGGGCATAGATCATTATTTGGATGAATGCAAGATTCGAGAGATTCGCGAGAACCCGAATATGAGTGAAGCCAAGTTGCGTGAGATTCTAGGACGAAAGGTTCGGTCGGAGAAGGTGGCGATCAAAGACATCAAGCTCAGAACTTTTATTACGGAAGGCAATAGCCGCAACGATTTGGCGGCTCATGTCTATGATATTACCTATGGCACGGTACAAGCCGGCGTAGACAATTTGGTCGTGATCGATGACAGTATCGTCCGTGGGACTACTCTGCGGCAGAGCATCATCGGTATCATGGATAGGTTGCAACCTAAGAAGATCGTCATTGTTTCCAGCTCTCCGCAGATTCGTTATCCGGACTACTATGGTATCGATATGCGTAAGATGCGCGAATTTGTCGCTTTCCGCTCCGCTGTGGCACTTCTTCAGGAGCGCGGTATGGAGCAAGTGTTGCACGATGCCTATGCAAAAGCTTTAGAGCTTCGGAAGTTGAGTTCCGGACAGGAGGTCGAAAATGTCGTTAAGACTATCTATAAGCCTTTCACGGCCGAGGAGATTTCAGCCAAGATGGTAGAGCTATTGAAGCCGGAAGGCGTGCGTGCCAAGGTGGAGATCGTATATCAAAGTTTGGAAGGCTTGCATCAGGCGATACCGAATCATCCGGGAGACTGGTATTTCTCCGGCGATTATCCGACACCCGGAGGCGCTCATTTGGTAAATGAAGCTTTTATCAGCTACATGGAAGAGGACTATGGCAAA","6.50","-5.21","71597","MEPLKHECGIAMVRLRKPLSYYHDKYGTWMYGLNKLYLLMEKQHNRGQEGAGLAVVKLNSRPGEEYLFRERALGANAISEIFDSVHKDFQAYSREELGDAEFAASQIPYAGECYMGHLRYSTTGKSGLTFVHPMIRRSNWRAKCLSICGNFNLTNVDGIFDEITSVGQHPRNMSDTHILLEQIGHRLDREVERLFRIGKEQNLKGMDITHFIEERIDLSNVLKKCSPFWDGGYVMCGLTGSGESYAVRDPWGIRPAFYYIDDEIVVTASERPVIQTVMNLSAEAVRELMPGEAIFVNSKGEPRIERILETKNYQACSFERIYFSRGSDQDIYRERKALGYLLSERILRAIDYDISHTVFSFIPNTAEVAYYGMLEGIDHYLDECKIREIRENPNMSEAKLREILGRKVRSEKVAIKDIKLRTFITEGNSRNDLAAHVYDITYGTVQAGVDNLVVIDDSIVRGTTLRQSIIGIMDRLQPKKIVIVSSSPQIRYPDYYGIDMRKMREFVAFRSAVALLQERGMEQVLHDAYAKALELRKLSSGQEVENVVKTIYKPFTAEEISAKMVELLKPEGVRAKVEIVYQSLEGLHQAIPNHPGDWYFSGDYPTPGGAHLVNEAFISYMEEDYGK","572831 574741","TIGR ID: PG0528","amidophosphoribosyltransferase","Cytoplasm","Numerous hits to amidophosphoribosyltransferass including: residues 36-509 are 25% similar to Pasteurella multocida, gb|AAK02785.1 and gb|AAF68406.1, residues 111-508 are 27% similar to gi|9949219|gb|AAG06496 of P.aeruginosa and residues 37-508 are 25% similar to ref|NP_069707.1, in Archaeoglobus fulgidus.","
InterPro
IPR000583
Domain
Glutamine amidotransferase, class-II
PF00310\"[229-271]TGATase_2
InterPro
IPR002375
Family
Purine/pyrimidine phosphoribosyl transferase
PS00103\"[452-464]TPUR_PYR_PR_TRANSFER
InterPro
IPR005854
Family
Amidophosphoribosyl transferase
PTHR11907\"[5-375]T\"[405-605]TAmd_phspho_trans
noIPR
unintegrated
unintegrated
G3DSA:3.60.20.10\"[8-387]TG3DSA:3.60.20.10
SSF53271\"[315-624]TSSF53271
SSF56235\"[8-334]TSSF56235


","BeTs to 11 clades of COG0034COG name: Glutamine phosphoribosylpyrophosphate amidotransferaseFunctional Class: FThe phylogenetic pattern of COG0034 is amtkyqvcebrh---------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 10:50:10 MDT 2001","","Thu Jun 14 10:50:10 MDT 2001","Thu Jun 14 10:50:10 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 10:50:10 MDT 2001","Thu Jun 14 10:50:10 MDT 2001","","","Thu Apr 5 19:56:46 MDT 2001","Wed Jun 20 11:14:37 MDT 2001","Thu Apr 5 19:56:46 MDT 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 20 14:54:25 MST 2001","-41% similar to PDB:1AO0 GLUTAMINE PHOSPHORIBOSYLPYROPHOSPHATE (PRPP) AMIDOTRANSFERASE FROM B. SUBTILIS COMPLEXED WITH ADP AND GMP (E_value = 1.1E_22);-40% similar to PDB:1ECB ESCHERICHIA COLI GLUTAMINE PHOSPHORIBOSYLPYROPHOSPHATE (PRPP) AMIDOTRANSFERASE COMPLEXED WITH 2 GMP, 1 MG PER SUBUNIT (E_value = 1.1E_22);-40% similar to PDB:1ECC ESCHERICHIA COLI GLUTAMINE PHOSPHORIBOSYLPYROPHOSPHATE (PRPP) AMIDOTRANSFERASE COMPLEXED WITH MN-CPRPP AND 5-OXO-NORLEUCINE (E_value = 1.1E_22);-40% similar to PDB:1ECF ESCHERICHIA COLI GLUTAMINE PHOSPHORIBOSYLPYROPHOSPHATE (PRPP) AMIDOTRANSFERASE (E_value = 1.1E_22);-40% similar to PDB:1ECG DON INACTIVATED ESCHERICHIA COLI GLUTAMINE PHOSPHORIBOSYLPYROPHOSPHATE (PRPP) AMIDOTRANSFERASE (E_value = 1.1E_22);","","","Residues 8 to 185 (E-value = 1.6e-05) place PG0481 in the GATase_2 family which is described as Glutamine amidotransferases class-II (PF00310)","Wed Jun 20 11:06:49 MDT 2001","34540343","","","","","","1","","","PG0528" "PG0482","574778","575848","1071","ATGAGAGAGCAAAGAAAAGCGACATTGATATTGGACGATGGTAGCCGTTTCGAAGGCTATTCTTTCGGTTGCGAACGTGCTGTGGCCGGAGAGGTCGTTTTCAATACGGCTATGACCGGCTATGTGGAGAGTCTGACGGATCCGAGTTATCGCGGACAAATCATGGTTATGACCTATCCTTTGGTGGGTAATTATGGCGTTCCGATGAAAGCAGCTGAGCCAAACGGCGTATCTTGCTTTATGGAAAGCGACAGAATACACATGGAAGGAATCGTTGTGTCCGACTATTCCCATTCTTATAGTCATTGGAATGCTGTCGAAAGCCTTGGCGATTGGCTCAAACGTGAGCAGGTATTCGGTCTGACGGGGATCGACACGAGGGCATTGGCCAAGCACCTCCGCGAACACGGTTCGATGAAAGGAAAGATAATTCTCGAAGGAGGCGAAGACATTGGCTTCGCCGATCCTTACACAGTCAATCAGGTAGCGGAGGCTTCTTGTCGTGAAGTAATCGTCTACGGCACTGGAAGCAAAAAGGTGGTACTCGTCGATTGTGGAGTGAAGGACAACATTATTCGCTCGCTTCTCCGTGAAGATATAACGCTCTACCGTGTACCATGGGATTACGACTTTCATCGAATAGCATACGACGGTCTCTTCATCAGCAACGGCCCGGGCGACCCCAATATGTGCAGCGTCACAGTGGAACATATTCGTCGGGCTGTGGCCGGCGACAAACCTATCTGCGGTATTTGCATGGGCAATCAGCTTTTGGCGAAAGCTGCCGGCGCAAGCATCTTCAAGCTCAAATACGGACACCGCAGTCACAACCAGCCGGTACGTGAGGTAGGCACTAATAAGTGCTATATAACGAGCCAGAATCACGGATTTGCTGTAGATCCGGCATCTCTCGGAAGTGATTGGGAGGAGCTTTATATCAACCTGAATGATGGCACGAACGAAGGTATTCGCCACAAGAGCAAGCCTTTCTTCTCTGCACAGTTTCATCCCGAAGCATGCGGTGGCCCTGTAGATACAATGTTCATTTTCGATGAATTCTTGAAAAACCTC","6.10","-6.52","39592","MREQRKATLILDDGSRFEGYSFGCERAVAGEVVFNTAMTGYVESLTDPSYRGQIMVMTYPLVGNYGVPMKAAEPNGVSCFMESDRIHMEGIVVSDYSHSYSHWNAVESLGDWLKREQVFGLTGIDTRALAKHLREHGSMKGKIILEGGEDIGFADPYTVNQVAEASCREVIVYGTGSKKVVLVDCGVKDNIIRSLLREDITLYRVPWDYDFHRIAYDGLFISNGPGDPNMCSVTVEHIRRAVAGDKPICGICMGNQLLAKAAGASIFKLKYGHRSHNQPVREVGTNKCYITSQNHGFAVDPASLGSDWEELYINLNDGTNEGIRHKSKPFFSAQFHPEACGGPVDTMFIFDEFLKNL","574778 575848 [Shadowed by 640]","The large subunit is immediately downstream at PG0484.TIGR ID: PG0529","carbamoyl-phosphate synthase small subunit","Cytoplasm","This regions shows very strong similarity (50%) to carbamoyl-phosphate synthases in a variety of species (both prokaryotic and eukaryotic).Among bacteria are: gb|AAD09129.1| (AF112473) PyrABCN in Aspergillus nidulans ; pdb|1JDB|F Chain F, Carbamoyl Phosphate Synthetase in E.coli; ref|NP_070101.1| carbamoyl-phosphate synthase, small (or glutamine) subunit (carA) in Archaeoglobus fulgidus.This sequence is similar to BT0556.","
InterPro
IPR000008
Domain
C2 calcium-dependent membrane targeting
PR00360\"[150-162]T\"[202-210]TC2DOMAIN
InterPro
IPR000991
Domain
Glutamine amidotransferase class-I
PF00117\"[181-356]TGATase
InterPro
IPR001317
Domain
Carbamoyl-phosphate synthase, GATase region
PR00099\"[180-194]T\"[216-230]T\"[247-263]T\"[264-281]T\"[289-300]TCPSGATASE
InterPro
IPR002474
Domain
Carbamoyl-phosphate synthase, small chain
PF00988\"[5-158]TCPSase_sm_chain
SSF52021\"[4-163]TCP_synthsmall
InterPro
IPR006220
Domain
Anthranilate synthase component II/delta crystallin
PR00097\"[219-228]T\"[247-258]T\"[332-345]TANTSNTHASEII
InterPro
IPR006274
Domain
Carbamoyl-phosphate synthase, small subunit
TIGR01368\"[7-357]TCPSaseIIsmall
InterPro
IPR011702
Domain
Glutamine amidotransferase superfamily
PR00096\"[219-228]T\"[247-258]T\"[332-345]TGATASE
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.880\"[155-357]TG3DSA:3.40.50.880
PTHR11405\"[7-356]TPTHR11405
PTHR11405:SF3\"[7-356]TPTHR11405:SF3
SSF52317\"[139-355]TSSF52317


","BeTs to 11 clades of COG0505COG name: Carbamoylphosphate synthase small subunitFunctional Class: E,FThe phylogenetic pattern of COG0505 is amt-YqvceBr-uj-------Number of proteins in this genome belonging to this COG is 1","***** IPB000991 (Glutamine amidotransferase class-I) with a combined E-value of 1.5e-08. IPB000991A 247-256 IPB000991B 329-340","Residues 7-143 are 57% similar to a (CARBAMOYL-PHOSPHATE SYNTHASE SYNTHETASE LIGASE SMALL) protein domain (PD001375) which is seen in P70087_ONCMY.Residues 160-217 are 47% similar to a (CARBAMOYL-PHOSPHATE SYNTHASE SYNTHETASE LIGASE SMALL) protein domain (PD105693) which is seen in CPSM_HUMAN.Residues 218-353 are 60% similar to a (SYNTHASE GLUTAMINE BIOSYNTHESIS AMIDOTRANSFERASE) protein domain (PD000306) which is seen in Q18990_CAEEL.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Thu Mar 28 14:24:50 2002","Mon Apr 30 14:09:30 MDT 2001","Tue Dec 2 16:47:11 2003","Tue Mar 26 16:57:05 2002","Thu Feb 22 15:27:28 MST 2001","Thu Feb 22 15:27:28 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 205 to 339 share 27% identity with PG0643, an anthranilate synthase component II; glutamine amidotransferase. ","Mon Apr 30 14:09:30 MDT 2001","Thu Feb 22 15:27:28 MST 2001","-53% similar to PDB:1BXR STRUCTURE OF CARBAMOYL PHOSPHATE SYNTHETASE COMPLEXED WITH THE ATP ANALOG AMPPNP (E_value = 5.0E_64);-53% similar to PDB:1CE8 CARBAMOYL PHOSPHATE SYNTHETASE FROM ESCHERICHIS COLI WITH COMPLEXED WITH THE ALLOSTERIC LIGAND IMP (E_value = 5.0E_64);-53% similar to PDB:1CS0 CRYSTAL STRUCTURE OF CARBAMOYL PHOSPHATE SYNTHETASE COMPLEXED AT CYS269 IN THE SMALL SUBUNIT WITH THE TETRAHEDRAL MIMIC L-GLUTAMATE GAMMA-SEMIALDEHYDE (E_value = 5.0E_64);-53% similar to PDB:1JDB CARBAMOYL PHOSPHATE SYNTHETASE FROM ESCHERICHIA COLI (E_value = 5.0E_64);-53% similar to PDB:1KEE Inactivation of the Amidotransferase Activity of Carbamoyl Phosphate Synthetase by the Antibiotic Acivicin (E_value = 5.0E_64);","","","Residues 6 to 154 (E-value = 1.6e-83) place PG0482 in the CPSase_sm_chain family which is described as Carbamoyl-phosphate synthase small chain, CPSase domain (PF00988)Residues 181 to 356 (E-value = 6.7e-58) place PG0482 in the GATase family which is described as Glutamine amidotransferase class-I (PF00117)","Tue Dec 2 16:47:11 2003","34540344","","","","","","1","","","PG0529" "PG0484","575870","579094","3225","ATGATAGACAAGAGCAAAATAAAGAAGGTACTGCTGCTCGGTTCGGGCGCACTTAAAATAGGGGAAGCCGGTGAATTCGATTATTCCGGTTCTCAGGCGTTGAAAGCCATTCGCGAAGAAGGTATCAGGACGGTGCTCGTCAATCCGAATATTGCCACAGTCCAAACGTCCGAAGGGATAGCCGACGAAATATATTTCCTGCCCGTAACGCCTTATTTCGTAGAGAAAGTTATTGAGAAAGAACGTCCCGATGGGATTCTCTTGGCATTCGGTGGTCAGACAGCTCTGAACTGTGGAGTCGAATTGTATCGAAGCGGTGTCTTGGAAAAGTATGGGGTAGAAGTACTCGGTACGCCTGTACAAGCTATCATGGATACCGAGGATCGCGAACTTTTTGTTCGCAAGCTCGATGAGATCAACGTGAAAACGATCCAGAGCCAAGCTGTAGAAAGCGTGGAGGAAGCGCGCAAAGCTGCTCGCGAATTGGGCTATCCCGTCATTGTTCGCGCTGCTTATGCCTTAGGCGGTTTGGGTAGCGGTTTCTGCGACGACGAAGACGAACTGAATATCCTTTGTGAAAAAGCTTTTTCTTTCAGCCCTCAAGTTCTTGTGGAGAAGAGCCTCAAAGGCTGGAAAGAGGTAGAATATGAAGTTGTACGCGACCGTTTCGACAATTGTATCACCGTGTGCAATATGGAGAATTTCGATCCTCTCGGCATCCATACGGGAGAGAGTATCGTCATCGCTCCCTCGCAGACACTCACCAACAGTGAATATCACAAACTCCGCGAGCTGGCCATTCGGATCATTCGCCACATCGGTATTGTCGGAGAATGCAATGTGCAGTATGCACTCGATCCCGATAGCGAGGACTACCGCGTCATCGAAGTAAATGCTCGTCTGAGCCGTTCGTCTGCTTTGGCATCCAAGGCAACGGGTTATCCTCTCGCTTTCGTCGCTGCCAAGTTAGGGTTGGGTTACGGCTTGTTCGACCTCAAAAACTCGGTGACACAGACTACTTCGGCTTTCTTCGAGCCGGCTCTTGACTATGTAGTCTGCAAAATTCCCCGTTGGGACTTGGGTAAATTCCACGGTGTAAGTCGCCAATTAGGTTCTTCTATGAAATCTGTCGGAGAGGTTATGGCCATCGGTCGCACCTTCGAGGAGGCTATCCAGAAGGGATTGCGTATGATCGGTCAGGGCATGCACGGTTTCGTAGAGAACAAAGAGCTCGTGATTCCCAATATAGACAAGGCACTGAATGAGCCGACCGACAGACGCATTTTCGTCATAAGCAAGGCATTTCGTCAAGGTTACACGGTAGATAAAATACATGAACTGACTAAGATCGATCGCTGGTTTCTGGAAAAACTCTATGGTATCGTTACCCTTGCAGAGGAAATGGAAGAGTTCGACAAGCTCGAAGATCTTTCACCTGCTCTTTTGGCTGAGGCCAAATTGCGCGGGTTTTCCGATTTTCAGGTAGCTCGTGCTGTACTCAAGCCGGATGCTACTTCGATGGAAAGCGCAACCAATCAGGTACGTGCCATGCGAAAGGAGCTGGGAATCCTACCGGTGGTTAAGCGTATCGATACGCTTGCAGCGGAGTATCCTGCTCATACGAACTATCTCTACCTGACGTATAGTGGCGATCGTCATGATGTAGCCTATGAGAACGACAAGCGTTCCGTAGTTGTACTCGGTTCGGGTGCATACCGTATCGGTAGCTCGGTGGAGTTTGACTGGTGTGGTGTCAATGCTCTGGCTACCATCCGTAAGGAAGGCTATCGCTCCGTCATGATCAACTATAATCCCGAGACGGTGAGTACGGACTATGATATTAGTGACAGGCTCTACTTCGACGAACTGACATTCGAGCGCGTAATGGATATTCTTGAACTGGAAAATCCTCATGGCGTTATTGTTTCCACAGGGGGACAAATCCCGAACAACCTTGCAGTTCGTCTCGATGAACAGCATGTGCCCATCCTGGGTACTTCCGCACAGAGTATTGACAATGCCGAGGATCGTCATAAATTCTCAGCCATGTTGGATAAATTGGGTATCGATCAGCCCCGTTGGCAGGAGCTTTCTTCGATGGACGACATTGACGGATTCGTTGCCGAAGTCGGTTATCCCGTTTTGGTTCGTCCGAGCTACGTCCTTTCCGGTGCAGCTATGAATGTGTGCTCCAATGATGAAGAACTTCATCGTTTCCTCGAATTGGCTGCCAATGTGTCCAAGCAACATCCTGTCGTTGTCAGCCAGTTTATCGAGCATGCCAAGGAGGTCGAGATGGATGCCGTGGCGCGTGATGGTGAGATCATAGCCTATGCGATCAGCGAGCATATCGAATTTGCAGGTGTGCACTCGGGTGATGCCACTATCCAGTTCCCTGCACAGAAATTGTATGTAGAGACTGTCCGCCGAATCAAACGGATCAGTCGTGAGATAGCAAAAGCTCTGAAAATATCAGGCCCCTTCAATATCCAGTTCCTTGCCAAGGGTAACGATATTAAGGTGATCGAGTGCAATTTGCGTGCTTCGCGCAGCTTCCCCTTCGTGAGCAAGGTGCTCAAGATCAACTTTATCGAATTGGCCACACGTATCATGCTCGGCCTGCCGGTAGAGAAGCCGAACAAGAGCGAGTTCGATCTGGACTATGTCGGTATCAAGGCCTCGCAGTTCTCCTTCACCCGCTTGCAAAAGGCCGACCCTGTCTTGGGTGTGGATATGACCAGTACCGGAGAGGTAGGCTGTATAGCGGATGATACGGACGAGGCTGTACTGAAGAGTATGCTTTCGGTAGGCTATCGCATTCCTCAGAAGAGTGTACTCTTATCTACCGGAGGCTATAAGCAAAAAGTGGATATGCTTGATGCTACGACCATGCTTGCAGCCAAAGGGTATAAGATCTATGCCACGGAGGGAACGCACAATTTTCTCAGAGAGAACGGAATCGAATCGACCAAAGTGTTCTGGCCGAGCGAGAACGGACAGCCTCAAGCTCTGGAATTGCTTCACAATCGTGAGATCGAGCTTGTGGTCAATATCAACAAGAATCTTACCGCAGGAGAACTGACCAATGGTTATAAACTCCGCCGTGCAGCCATCGACCTGAATATCCCGCTGGTTACAAATGCTCGTTTGGCTTCTGCCTTCATCACGGCATTCTGCAAACATAGCCCTGAGGATATTCGCATCAAGAGTTGGGCTGAATACAAG","5.30","-23.84","119637","MIDKSKIKKVLLLGSGALKIGEAGEFDYSGSQALKAIREEGIRTVLVNPNIATVQTSEGIADEIYFLPVTPYFVEKVIEKERPDGILLAFGGQTALNCGVELYRSGVLEKYGVEVLGTPVQAIMDTEDRELFVRKLDEINVKTIQSQAVESVEEARKAARELGYPVIVRAAYALGGLGSGFCDDEDELNILCEKAFSFSPQVLVEKSLKGWKEVEYEVVRDRFDNCITVCNMENFDPLGIHTGESIVIAPSQTLTNSEYHKLRELAIRIIRHIGIVGECNVQYALDPDSEDYRVIEVNARLSRSSALASKATGYPLAFVAAKLGLGYGLFDLKNSVTQTTSAFFEPALDYVVCKIPRWDLGKFHGVSRQLGSSMKSVGEVMAIGRTFEEAIQKGLRMIGQGMHGFVENKELVIPNIDKALNEPTDRRIFVISKAFRQGYTVDKIHELTKIDRWFLEKLYGIVTLAEEMEEFDKLEDLSPALLAEAKLRGFSDFQVARAVLKPDATSMESATNQVRAMRKELGILPVVKRIDTLAAEYPAHTNYLYLTYSGDRHDVAYENDKRSVVVLGSGAYRIGSSVEFDWCGVNALATIRKEGYRSVMINYNPETVSTDYDISDRLYFDELTFERVMDILELENPHGVIVSTGGQIPNNLAVRLDEQHVPILGTSAQSIDNAEDRHKFSAMLDKLGIDQPRWQELSSMDDIDGFVAEVGYPVLVRPSYVLSGAAMNVCSNDEELHRFLELAANVSKQHPVVVSQFIEHAKEVEMDAVARDGEIIAYAISEHIEFAGVHSGDATIQFPAQKLYVETVRRIKRISREIAKALKISGPFNIQFLAKGNDIKVIECNLRASRSFPFVSKVLKINFIELATRIMLGLPVEKPNKSEFDLDYVGIKASQFSFTRLQKADPVLGVDMTSTGEVGCIADDTDEAVLKSMLSVGYRIPQKSVLLSTGGYKQKVDMLDATTMLAAKGYKIYATEGTHNFLRENGIESTKVFWPSENGQPQALELLHNREIELVVNINKNLTAGELTNGYKLRRAAIDLNIPLVTNARLASAFITAFCKHSPEDIRIKSWAEYK","575870 579094","The small subunit is immediately upstream.TIGR ID: PG0530","glutamine-hydrolyzing carbamoyl-phosphate synthase large subunit","Cytoplasm","Residues 8 to 1061 share 55% identity with emb|CAA91130.1| (Z54328), the ura1 protein - contains: glutamine-dependent carbamoyl-phosphatesynthase in Schizosaccharomyces pombe.Residues 8 to 1061 share 56% identity with ref|NP_012405.1| carbamoyl-phophate synthetase, aspartate transcarbamylase, andglutamine amidotransferase; Ura2p in Saccharomyces cerevisiae.There are numerous bacterial genera that also share the same degree of identity for carbamoyl-phophate synthetases over the same region (Aspergillus nidulans, Bacillus subtilis, Archaeoglobus fulgidus, etc.). In addition, there is a very high degree of identity for this region with the carbamoyl-phosphate synthase genes of all currently sequenced eukaryotic model organisms.This sequence is similar to BT0557.","
InterPro
IPR005479
Domain
Carbamoyl-phosphate synthase L chain, ATP-binding
PF02786\"[128-360]T\"[676-898]TCPSase_L_D2
PS00866\"[164-178]T\"[712-726]TCPSASE_1
PS00867\"[294-301]?\"[841-848]?CPSASE_2
InterPro
IPR005480
Domain
Carbamoyl-phosphate synthetase large chain, oligomerisation
PF02787\"[416-548]TCPSase_L_D3
InterPro
IPR005481
Domain
Carbamoyl-phosphate synthetase large chain, N-terminal
PF00289\"[6-126]T\"[560-674]TCPSase_L_chain
InterPro
IPR005483
Domain
Carbamoyl-phosphate synthetase large chain
PR00098\"[19-33]T\"[48-58]T\"[168-180]T\"[202-221]T\"[237-254]T\"[294-323]T\"[376-394]TCPSASE
InterPro
IPR006275
Domain
Carbamoyl-phosphate synthase, large subunit, glutamine-dependent
TIGR01369\"[2-1058]TCPSaseII_lrg
InterPro
IPR011607
Domain
MGS-like
PF02142\"[957-1046]TMGS
InterPro
IPR011761
Domain
ATP-grasp fold
PS50975\"[133-325]T\"[681-872]TATP_GRASP
InterPro
IPR013816
Domain
ATP-grasp fold, subdomain 2
G3DSA:3.30.470.20\"[187-399]T\"[735-937]TATP_grasp_subdomain_2
InterPro
IPR013817
Domain
Pre-ATP-grasp fold
G3DSA:3.40.50.20\"[1-116]T\"[555-661]TPre-ATP_grasp
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.1380\"[938-1059]TG3DSA:3.40.50.1380
PTHR11405\"[7-1074]TPTHR11405
SSF48108\"[392-556]TSSF48108
SSF52335\"[943-1074]TSSF52335
SSF52440\"[1-127]T\"[558-678]TSSF52440
SSF56059\"[128-398]T\"[676-936]TSSF56059


","BeTs to 11 clades of COG0458COG name: Carbamoylphosphate synthase large subunit (split gene in MJ)Functional Class: E,FThe phylogenetic pattern of COG0458 is aMT-YQvceBr-uj-------Number of proteins in this genome belonging to this COG is 1","***** IPB000901 (Carbamoyl-phosphate synthase) with a combined E-value of 1.2e-21. IPB000901A 527-545 IPB000901B 707-727 IPB000901C 782-793","Residues 872-943 are 50% similar to a (CARBAMOYL-PHOSPHATE SYNTHASE SYNTHETASE LIGASE LARGE) protein domain (PD000705) which is seen in PYR1_SCHPO.Residues 477-548 are 56% similar to a (CARBAMOYL-PHOSPHATE SYNTHASE SYNTHETASE LIGASE LARGE) protein domain (PD001652) which is seen in PYR1_HUMAN.Residues 402-468 are 45% similar to a (CARBAMOYL-PHOSPHATE SYNTHASE SYNTHETASE LIGASE LARGE) protein domain (PD001706) which is seen in PYR1_DICDI.Residues 944-1074 are 33% similar to a (CARBAMOYL-PHOSPHATE SYNTHASE) protein domain (PD111277) which is seen in Q27732_PLAFA.Residues 631-869 are 60% similar to a (LIGASE SYNTHETASE CARBOXYLASE CARBAMOYL-PHOSPHATE) protein domain (PD000180) which is seen in PYR1_YEAST.Residues 560-610 are 64% similar to a (CARBAMOYL-PHOSPHATE SYNTHASE SYNTHETASE LIGASE LARGE) protein domain (PD000704) which is seen in O93937_EMENI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Tue Mar 26 16:58:21 2002","Tue Mar 26 16:59:44 2002","Tue Dec 2 16:49:34 2003","Tue Mar 26 16:58:21 2002","Thu Feb 22 15:14:09 MST 2001","Thu Feb 22 15:14:09 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 22 15:14:09 MST 2001","-59% similar to PDB:1BXR STRUCTURE OF CARBAMOYL PHOSPHATE SYNTHETASE COMPLEXED WITH THE ATP ANALOG AMPPNP (E_value = );-59% similar to PDB:1C30 CRYSTAL STRUCTURE OF CARBAMOYL PHOSPHATE SYNTHETASE: SMALL SUBUNIT MUTATION C269S (E_value = );-59% similar to PDB:1C3O CRYSTAL STRUCTURE OF THE CARBAMOYL PHOSPHATE SYNTHETASE: SMALL SUBUNIT MUTANT C269S WITH BOUND GLUTAMINE (E_value = );-59% similar to PDB:1CS0 CRYSTAL STRUCTURE OF CARBAMOYL PHOSPHATE SYNTHETASE COMPLEXED AT CYS269 IN THE SMALL SUBUNIT WITH THE TETRAHEDRAL MIMIC L-GLUTAMATE GAMMA-SEMIALDEHYDE (E_value = );-59% similar to PDB:1JDB CARBAMOYL PHOSPHATE SYNTHETASE FROM ESCHERICHIA COLI (E_value = );","","","Residues 6 to 126 (E-value = 2.2e-61) place PG0484 in the CPSase_L_chain family which is described as Carbamoyl-phosphate synthase L chain, N-terminal domain (PF00289)Residues 128 to 360 (E-value = 1.3e-141) place PG0484 in the CPSase_L_D2 family which is described as Carbamoyl-phosphate synthase L chain, ATP binding domain (PF02786)Residues 416 to 548 (E-value = 1.1e-62) place PG0484 in the CPSase_L_D3 family which is described as Carbamoyl-phosphate synthetase large chain, oligomerisation domain (PF02787)Residues 560 to 674 (E-value = 2.7e-16) place PG0484 in the CPSase_L_chain family which is described as Carbamoyl-phosphate synthase L chain, N-terminal domain (PF00289)Residues 676 to 898 (E-value = 1.1e-13) place PG0484 in the CPSase_L_D2 family which is described as Carbamoyl-phosphate synthase L chain, ATP binding domain (PF02786)Residues 945 to 1046 (E-value = 5.7e-27) place PG0484 in the MGS family which is described as MGS-like domain (PF02142)","Tue Dec 2 16:49:34 2003","34540345","","","","","","1","","","PG0530" "PG0485","581230","579290","1941","ATGAGATACGGATTTATGAAGGTCGCAGCAGCTGTTCCTTTTGTGAAAGTGGCCGATTGCGAATACAATATCGAGCGGATCGACCGCATGGTACACGAGGCCGATGCCAAAGGTGTAGAGATAATGACGTTCCCCGAATTGAGCATAACGGGCTATTCATGCGGCGACTTGTTTTTCCAGCCTTTCCTACAAGAACGAGCCAACGAAGCCTTGTGCCGATTGGTGGAGCAAACTGCCAATACGACTGTCATGGTGATAGTGGGGATGCCGCTGCGCGTGGAAGAAAAGCTGTTCAACTCGGCTGTGGTATTCCAGCAGGGAAAGATACTCGGTGCCATCCCCAAAACTTACCTGCCGAACTATCGCGAATTTCAGGAGGCTCGCTGGTTCTCACCGGCTCATACCCTGCAGTACTCGACCATCAGTATCGGTCAGCACAGCGTACCCATCGGGCGGAACCTCATATTCAAATGTGGCACCGTGGGTGTCGGCATAGAGATTTGTGAGGATATGTGGACGCCTTTCACTCCGGGTACACGTCTCTGCCTTTATGGAGCAGAGGTGATCTTCAACCTCTCCTCCAGCAATGAAAATGCAGGCAAACATTCTTACTTGAGATCGCTTATCAGCGGCCTTTCTTCACAGGGTATCTGTGCTTATGTATATGCCAGCAGCGGATACGGCGAAAGCTCCACGGATATCGTCTTCACCGGCAAAGCCTTTATTGCCGAGGCCGGAGAGATCGTGGAGGAGATGGAGCGATTCCGCTATGAGGAAAGGATGATCATCAGCGATATAGACGTTTCGCGTATTCAGACGGAGCGGCTTATCAATAGCAGCTTCAAGGCTGCCGTTACCTTCCACACCCATGACGAAAAGTTCAATCAGCTGCCCTTCAAACTACGTAGCCGGCAGGAGTCTCTCCCGATGACGCGCCGTGTGGATCGCAACCCCTTCATGCCGGAGGACAAGGATCGTAAGGAGCGTTCGCGCGAGATGATCAATATCCAAGTGTGCGGTCTCATGCAACGCCTGCTACACATGGGTGCGGAGCACGCCGTAATCGGTATTTCGGGCGGACTCGACTCTGCACTGGCACTGATCGTCTGTGCACAGGCATTCGACCGGCTGGATTTGCCCCGTAAGAACATCATTGCCGTTACGATGCCGGGGTTCGGAACTTCCGATCGTACTTATCGGAACGCCTTTGCTCTGATGGAGGCCATCGGCGTGACGATCAAAGAGATAGACATCAAGGAGGCTTGTCTCCGACACTTCGAAGCCATAGGACATAATCCGGAGGTGCAGGATACGACCTTCGAGAATACGCAAGCTCGCGAGCGAACACAAATACTGATGAATCTGGCCAATATATACAACGCTCCAGTTATAGGTACGGGTGATCTGTCCGAACTGGCTCTCGGATGGGTAACGTACAATGGCGATCATATGTCCATGTATGCCGTCAATGCAGGGATAGCCAAGACTACGGTACAGATTCTCGTCGATCATATAGCGCATAGCGGCTGGCTGGATGAGGCAGCTTCGGCTGTTTTGCTGGACATCGTCCGTACTCCCATCAGTCCCGAACTCAAGCCTGTGGGACAGGATGGAAATATCAGCCAGAAGACGGAAGATCTGGTCGGGCCATACGAATTGCACGACTTCTTCATCTACCATTTCCTCCACAATGAATACAAGCCCTCGAAGATCTACTACCTCGCCGGTGTAGCTTTCAAGGGGATCTATACCAAGGCGGAGATCAAGAAATGGATGATGGTATTCTTCCGTCGTTTCTTCGCTCAGCAGTACAAACGTAATTGTATGCCGGATGGGCCAAAAGTAAGCTGCATCAGTCTGTCGCCCCGCGGAGCATGGCGTATGGCCAGCGATGCCAGCAGTGCGCTCTGGTTAGACGAAATAGCCAAGTTCGAAACGGAT","6.30","-6.65","72819","MRYGFMKVAAAVPFVKVADCEYNIERIDRMVHEADAKGVEIMTFPELSITGYSCGDLFFQPFLQERANEALCRLVEQTANTTVMVIVGMPLRVEEKLFNSAVVFQQGKILGAIPKTYLPNYREFQEARWFSPAHTLQYSTISIGQHSVPIGRNLIFKCGTVGVGIEICEDMWTPFTPGTRLCLYGAEVIFNLSSSNENAGKHSYLRSLISGLSSQGICAYVYASSGYGESSTDIVFTGKAFIAEAGEIVEEMERFRYEERMIISDIDVSRIQTERLINSSFKAAVTFHTHDEKFNQLPFKLRSRQESLPMTRRVDRNPFMPEDKDRKERSREMINIQVCGLMQRLLHMGAEHAVIGISGGLDSALALIVCAQAFDRLDLPRKNIIAVTMPGFGTSDRTYRNAFALMEAIGVTIKEIDIKEACLRHFEAIGHNPEVQDTTFENTQARERTQILMNLANIYNAPVIGTGDLSELALGWVTYNGDHMSMYAVNAGIAKTTVQILVDHIAHSGWLDEAASAVLLDIVRTPISPELKPVGQDGNISQKTEDLVGPYELHDFFIYHFLHNEYKPSKIYYLAGVAFKGIYTKAEIKKWMMVFFRRFFAQQYKRNCMPDGPKVSCISLSPRGAWRMASDASSALWLDEIAKFETD","581230 579290","TIGR ID: PG0531","glutamine-dependent NAD(+) synthetase","Cytoplasm","This sequence is highly similar to BT0205, a predicted NAD+ synthetase.Residues 2 to 641 share 38% identity with sp|P71911|NADE_MYCTU, a glutamine-dependent NAD(+) synthetase (NAD(+)synthase [glutamine-hydrolysing]).Residues 2 to 641 share 32% identity with gb|AAC65748.1| (AE001249), NH(3)-dependent NAD(+) synthetase (nadE) in Treponema pallidum.There are other strong matches with NAD+ synthetases in organisms such as Aquifex aeolicus, Thermotoga maritima, Synechocystis sp., etc.","
InterPro
IPR003010
Domain
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
G3DSA:3.60.110.10\"[1-275]TNtlse/CNhydtse
PF00795\"[7-194]TCN_hydrolase
PS50263\"[6-310]TCN_HYDROLASE
SSF56317\"[3-296]TNtlse/CNhydtse
InterPro
IPR003694
Domain
NAD+ synthase
PF02540\"[333-482]TNAD_synthase
TIGR00552\"[330-602]TnadE
InterPro
IPR014445
Family
Glutamine-dependent NAD(+) synthetase, GAT region
PIRSF006630\"[6-638]TNADS_GAT
InterPro
IPR014729
Domain
Rossmann-like alpha/beta/alpha sandwich fold
G3DSA:3.40.50.620\"[313-602]TRossmann-like_a/b/a_fold
noIPR
unintegrated
unintegrated
PTHR23090\"[10-641]TPTHR23090
PTHR23090:SF1\"[10-641]TPTHR23090:SF1
SSF52402\"[314-618]TSSF52402


","BeTs to 12 clades of COG0171COG name: NAD synthaseFunctional Class: HThe phylogenetic pattern of COG0171 is amtkyqVcebr-ujgpol---Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 38-301 are 35% similar to a (PROTEIN ERG7-NMD2 INTERGENIC REGION) protein domain (PD043060) which is seen in P71911_MYCTU.Residues 441-504 are 60% similar to a (NH3-DEPENDENT NAD+ SYNTHETASE LIGASE) protein domain (PD004581) which is seen in O83759_TREPA.Residues 19-242 are 30% similar to a (PROTEIN HYDROLASE NITRILASE ALIPHATIC) protein domain (PD000957) which is seen in NADE_AQUAE.Residues 514-641 are 46% similar to a (NH3-DEPENDENT NAD+ SYNTHETASE NADE) protein domain (PD203869) which is seen in O83759_TREPA.Residues 505-641 are 37% similar to a (HYPOTHETICAL 80.5 KD PROTEIN) protein domain (PD094636) which is seen in P71911_MYCTU.Residues 335-431 are 49% similar to a (PROTEIN NH3-DEPENDENT NAD+ SYNTHETASE) protein domain (PD142888) which is seen in P71911_MYCTU.Residues 4-246 are 24% similar to a (NH3-DEPENDENT NAD+ SYNTHETASE NADE) protein domain (PD185487) which is seen in O83759_TREPA.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Feb 22 14:58:26 MST 2001","Thu Nov 20 21:08:49 2003","Fri Mar 9 15:51:43 MST 2001","","Thu Feb 22 14:58:26 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 22 14:58:26 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 7 to 194 (E-value = 6.7e-12) place PG0485 in the CN_hydrolase family which is described as Carbon-nitrogen hydrolase (PF00795)Residues 389 to 614 (E-value = 7.3e-48) place PG0485 in the NAD_synthase family which is described as NAD synthase (PF02540)","Fri Mar 9 15:51:43 MST 2001","34540346","","","","","","1","","","PG0531" "PG0486","582239","581343","897","ATGGAGAGAGGACAATCGTTAGCTTTGCAGTCCAATCGAAACAGACCTTATATGATACGCATCATACAACCGATCTTGCGAAGCGAGCGAAGACGCAAATTGGGACGCGAATACTTCATTCTTCACCGCAAGTTGTCGGACTGCTTTTCTTCGATCAAATGGGCTTTACCAGCGAAGGGAGACAATTCTCATGGCTGTTCCTATCCGGTCATGGAGCATCGGTCGCTCATTATGCGCCGGCTGAAGGATGTGGATATGTACATGCAAGAGAACAAACGAACCAATCTGCGACTGGCCATCTCCAAGCTGCACGGTATGATCATACGTCCCGGAGAGACCTTCTCCGTCTGGCGTCATGTCGGTCGTCCGACTGCTCGCAAGGGGTACCTCGAAGGTTTGGTATTGAGTCAGGGGAAGATCGGCAAAGGAGTGGGAGGCGGTCTCTGCCAGCTTGGCAACCTGCTCTTTTGGATGTTTGCTCATACGCCGCTGTCCATAGTCGAGCGACACAGGCACAGCTTCGATGTTTTTCCTGACATAAATCGCAGTATTCCGTTCGGAGCAGGAGCTACGCTTTCGTATAACTATATCGACCTTCGGGTCAGCAACAATACGCCGCACACCTACAGGCTGGAACTCTGGCTGGACGATACGCACCTGAACGGACGGATCAGCTCCGATACGGAGCAGAGGGATCGTTATCGCATCGAGGAGACGGATCACCGCATAGAGCATCAGAGTTGGGGTGGCTATACGCGACACAATAAGCTGGTACGTATCGTCACTCGTGCCGATGGCAGCGAATATACCGAGCCGTTTGTGGAGAATCATGCCATCATGATGTACAATCCTTTGCTCTCCCCTCCCCAAAATGGTGCAAGCACCTCTTTCCAAAGG","10.80","18.23","34719","MERGQSLALQSNRNRPYMIRIIQPILRSERRRKLGREYFILHRKLSDCFSSIKWALPAKGDNSHGCSYPVMEHRSLIMRRLKDVDMYMQENKRTNLRLAISKLHGMIIRPGETFSVWRHVGRPTARKGYLEGLVLSQGKIGKGVGGGLCQLGNLLFWMFAHTPLSIVERHRHSFDVFPDINRSIPFGAGATLSYNYIDLRVSNNTPHTYRLELWLDDTHLNGRISSDTEQRDRYRIEETDHRIEHQSWGGYTRHNKLVRIVTRADGSEYTEPFVENHAIMMYNPLLSPPQNGASTSFQR","582251 581343","TIGR ID: PG0532","conserved hypothetical protein (possible vancomycin B-type resistance protein VanW)","Cytoplasm","Residues 85 to 251 share 44% identity with gb|AAG34689.1|AF310956_4 (AF310956), VanWB2 in Enterococcus faecium.Residues 85 to 251 share 41% identity with sp|Q47747|VANW_ENTFA, the vancomycin B-type resistance protein VanW.Residues 85 to 251 share 42% identity with gb|AAF72361.1|AF192329_22 (AF192329), the VanW protein in Enterococcus faecalis.There are other indeterminate matches to several bacterial genera.","
InterPro
IPR007391
Family
VanW
PF04294\"[86-228]TVanW


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 90-203 are 38% similar to a (YOAR VANCOMYCIN B-TYPE RESISTANCE) protein domain (PD039797) which is seen in VANW_ENTFA.","","Thu Jun 14 10:50:59 MDT 2001","","Thu Jun 14 10:50:59 MDT 2001","Thu Jun 14 10:50:59 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 10:50:59 MDT 2001","Thu Jun 14 10:50:59 MDT 2001","","","Thu Feb 22 14:50:44 MST 2001","Wed Jun 20 11:05:51 MDT 2001","Thu Feb 22 14:50:44 MST 2001","","Wed Jun 20 11:02:38 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 22 14:50:44 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 64 to 225 (E-value = 3.2e-58) place PG0486 in the VanW family which is described as VanW like protein (PF04294)","Wed Jun 20 11:02:38 MDT 2001","34540347","","","","","","1","","","PG0532" "PG0487","583383","585863","2481","ATGAAGGAAGCTATTCCCCGAAAGAACAAGTATATAAAGCTCAACGGTATATACAGATTGTCATTCATTCTGCTATGCTGCCTGCTATGCTCTCAGGCAGCTATGGCACAAGGCGTCAGGGTATCGGGCTATGTGCTCGACCGTGGGGAAAAGCCGATCCCGTTCGCCGGAGTCAAAGTGCGTGGTACGGGGACAGGCGCAACGACGAATCTGAAAGGATACTACGAGTTTCGGATGAAGGCCACGACGGACAGCATCACGATCGAGTTCAGCTCCATGGGGTACCAAGGGGTAAGTCGCAGCTTTCCGTCTCTGACCAAGGACACTCGGCTGAATGTTCGTTTGGCAGAGGCCGAGATGGAGCTTTCGAGCGTGACGGTACAGGCCACAAAACGCAGACTCAACACGATGGAGCGCGTCAATACCCGAGACCTTCGTGTCAATGCAGGGCCTACGGGAGGGGTGGAATCGCTCATCAGTACCTACGCAGGAGTAACGCAGAACAATGAACTAAGCTCGCAATACTCGGTTCGCGGAGGAAGCTACGATGAGAATATGGTCTATGTAAACGGAGTGGAGGTTTATCGCCCGCTGCTGGTTCGCTCTGCACAGCAGGAAGGTCTGAGCTTCGTCAATCCGGATCTGACACAATCCGTACAGTTCTCCGCCGGAGGGTTCACGGCCGACTATGGCGACAAGATGTCCTCCGTACTGGATATTCGCTACAAGCAACCGCAGGAGAAGGAAGGAGCGGTACTCCTCGGGATGCTACAATCGAGTGCCTACTATGGCAGCAGTGCCGGAGCCTTCAGCCAAATCACGGGTGTACGCTACAAGAGTGCCAAATCGCTCTTGGGCACTACGGACACGAAAGCCGAATACGATCCGATCTATGCGGACGGACAGACATTCATGACGTACCGTTTCAGCCCCAAGCTGTCGGTTAGTTTCCTCGGCAATATTTCGCAAACTCGCTACAAGTTTGTCCCTCAGACCCGTGAGACGAGCTTCGGTACACTGAGCGATGCCAAAAAGTTGAAGATCTTTTTCGACGGTCAGGAACAAGATCGTTTCCTGACCTACTTCGGTGCCTTCAGCATGAACTTCGTGCCGGACGACAAACAGCGGCATACGGTTACGCTTTCGGCCTTCAACAGTAACGAACGGGAGACCTACGATATTCAGGGAGAATACTTTCTGAACGATGTGCAGCTGGGGGCGGACGGAACTGCTTCGATGGCTTCGGGCTCAGAGAACTCCAACGGCTTGGGCATCGGGCGCAATCACGAGCATGCGCGCAACAGGCTGAGCTACCGCGTGCTGAACATGGGTTACAGAGGGGAGATGAAGCTGAACGAGAAGCATCGCCTGCAAGCCGGCGTATCGGCACAGATGGAGAAAATAGCCGACCATATCAGCGAATGGGAACGGAGGGATTCGGTAGGATACAACCTACCTCACTCGGAGACCGTATTGCTGATGTACAATAACCTATATGCCGATACGCAGATGAGGGGAACGCGCTTGTCGGCATTCGTACAGGATCGATTCAACTTCAGCATGGGAGGAGGTACATTTTCTCTCATTCCGGGTATCAGAGCTTCGTGGTGGAGCTTCAACAAGGAGTTGCTCGTCAGCCCACGTATCAGCGTGGGTTATTCTCCCGAAAGCAACCCGGCTTTGGTACTGCGTGCAGCCGCCGGACTTTATTATCAGGCACCGTTTTACAAAGAGCTAAGGCAGACGCATAAGGATGCCGAAGGCAATAACGTGGTTGTCCTCAACGAGAAGATCCGCTCTCAGGGAGCTTTTCACATTCTCGCAGGAGCAGACTATACCTTCGAAATGGGGGGGCGAAAATACAAGTTTACGGCAGAGGCTTACTACAAGAGCCTGTTCAACATCAACCCGTATATAATAGAGAACGTGAAGATCCGCTATCTGGGCGAAAACATCGGTTCGGGTTATGCTGCGGGTATCGATCTCAAGCTCTTCGGCGAACTGGTACCCGGAGTGGATTCGTGGCTGACGGCTTCCATTATAAAAGCCCGTCAGAAACTGGATGGCTACGGTTCTTTACCACTGATGAACGCACCCACTTACAATTTCTCCTTCTTCCTTCAGGAGTACGTGCCGGGCAATAAACGCATCACAGCCACCCTGCGGGCTGCACTAAGCGGAGGATTGCCCCAGCTCAATCCGAGCAAAGGGCTTAGCTCGCCGGCCTTTACCGCACCGGCCTATAAGCGTGTCGATCTGGGGGTAATGTACAAATGGCTCGACCCGGATGACTCCTTTGCCGGCCGAAGCAAATGGCTAATGGGAGTAAAAGGGGCCTACATAGGGGCTGACCTCTTCAATCTGTTCGACATGACCAACGTCAATTCTTACTACTGGGTGTCGGATGCCTACCAACAGCAATACGCCGTACCGAACTACCTGACACGCCGCCAATTCAACCTGCGTCTCCTCGTCGAATTC","10.00","17.84","92414","MKEAIPRKNKYIKLNGIYRLSFILLCCLLCSQAAMAQGVRVSGYVLDRGEKPIPFAGVKVRGTGTGATTNLKGYYEFRMKATTDSITIEFSSMGYQGVSRSFPSLTKDTRLNVRLAEAEMELSSVTVQATKRRLNTMERVNTRDLRVNAGPTGGVESLISTYAGVTQNNELSSQYSVRGGSYDENMVYVNGVEVYRPLLVRSAQQEGLSFVNPDLTQSVQFSAGGFTADYGDKMSSVLDIRYKQPQEKEGAVLLGMLQSSAYYGSSAGAFSQITGVRYKSAKSLLGTTDTKAEYDPIYADGQTFMTYRFSPKLSVSFLGNISQTRYKFVPQTRETSFGTLSDAKKLKIFFDGQEQDRFLTYFGAFSMNFVPDDKQRHTVTLSAFNSNERETYDIQGEYFLNDVQLGADGTASMASGSENSNGLGIGRNHEHARNRLSYRVLNMGYRGEMKLNEKHRLQAGVSAQMEKIADHISEWERRDSVGYNLPHSETVLLMYNNLYADTQMRGTRLSAFVQDRFNFSMGGGTFSLIPGIRASWWSFNKELLVSPRISVGYSPESNPALVLRAAAGLYYQAPFYKELRQTHKDAEGNNVVVLNEKIRSQGAFHILAGADYTFEMGGRKYKFTAEAYYKSLFNINPYIIENVKIRYLGENIGSGYAAGIDLKLFGELVPGVDSWLTASIIKARQKLDGYGSLPLMNAPTYNFSFFLQEYVPGNKRITATLRAALSGGLPQLNPSKGLSSPAFTAPAYKRVDLGVMYKWLDPDDSFAGRSKWLMGVKGAYIGADLFNLFDMTNVNSYYWVSDAYQQQYAVPNYLTRRQFNLRLLVEF","583383 585863","TIGR ID: PG0534","conserved hypothetical protein; possible outer membrane protein","Outer membrane, Extracellular","Its nearest neighbor in the NR database is gi:48853941 from Cytophaga hutchinsonii.","
InterPro
IPR000531
Domain
TonB-dependent receptor
PF00593\"[546-827]TTonB_dep_Rec
InterPro
IPR008969
Domain
Carboxypeptidase regulatory region
SSF49464\"[40-117]TCarboxypepD_reg
InterPro
IPR012910
Domain
TonB-dependent receptor, plug
PF07715\"[160-238]TPlug
noIPR
unintegrated
unintegrated
G3DSA:2.40.170.20\"[353-827]TG3DSA:2.40.170.20
SSF56935\"[122-827]TSSF56935


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Mar 3 10:22:08 2005","Thu Mar 3 10:20:15 2005","Tue Feb 20 14:36:33 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 22-241 show 22% similarity to PG1948. ","Wed Mar 14 16:46:08 MST 2001","Thu Mar 3 10:20:15 2005","No significant hits to the PDB database (E-value < E-10).","","","Residues 132 to 827 (E-value = 2e-05) place PG0487 in the TonB_dep_Rec family which is described as TonB dependent receptor (PF00593)","Wed Mar 14 16:46:08 MST 2001","34540348","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Thu Mar 3 10:22:08 2005","","1","","","PG0534" "PG0488","586667","586050","618","ATGAAACAGATCCATTATGTCATCGAGGCTGTACTGGCCGTTGCCATCATCATCCTCTTCATTATGATGCCGCGTTCATCCGCATCAAAAGCCAAGACAACAAATCATAAGGCAGAACAAGCTGCCGCCACTCTGCCTATAGCTTTCGTAAGGATGGACAGCCTGGCCTCGCAATATGAATACTTTCGGGACATGAACAAACAACTTGCGGCCGAAGCTGAGCAGAACCAAAGAACCTTGGCTACCAAGATGACTGCCATGCAGAAAGCTGCGGAGGATTTCCAACGCCGTCTTCGGACGAATGCATTCACCAGCGAAGATGCTGCACGAGTGGAACAGGAGAAAATCCTGAAGATGCAAGAAGAAGGCCAAAGATTGGAACTCAGCATGACACAAGCTTTGGCCAACAAACAGGCGGAAGCCAATGAGAAAATGTACCGGATAGTACGCGAGCAAGTCAGCGAAATGAATAAGGACGGTAAATACCGCTATATACTTACCAACGTTGGTCTTGAAAACTTGCTGTATGCTGACAGCACGTTGGACATCACCGATGATGTGGTGAAGTTCTTAAACGATCACTATCGCAAGGAAATCAAGGGCAAAAACACAGCAGAA","8.90","1.73","23622","MKQIHYVIEAVLAVAIIILFIMMPRSSASKAKTTNHKAEQAAATLPIAFVRMDSLASQYEYFRDMNKQLAAEAEQNQRTLATKMTAMQKAAEDFQRRLRTNAFTSEDAARVEQEKILKMQEEGQRLELSMTQALANKQAEANEKMYRIVREQVSEMNKDGKYRYILTNVGLENLLYADSTLDITDDVVKFLNDHYRKEIKGKNTAE","586667 586050","TIGR ID: PG0535","hypothetical protein","Periplasm, Outer membrane, Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR005632
Family
Outer membrane chaperone Skp (OmpH)
PF03938\"[26-192]TOmpH
noIPR
unintegrated
unintegrated
SSF111384\"[42-192]TSSF111384


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Apr 6 16:46:08 MDT 2001","","Tue Feb 20 13:58:51 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Jul 13 14:57:40 2004","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Fri Apr 6 16:46:08 MDT 2001","34540349","","","","","","1","","","PG0535" "PG0488.1","586681","586983","303","ATGTTTTTTGTTTCGTTATTATTCGAGTTCTTTGATTCGATCTTCGAGATTGCGGTGATGTTGGGCTTCGAAATGTTGTGCCGTATGGCAGCCGATTCCTCTGTCTTGCATTGCCTTGTTGCTGCCTACATGGGTCTGGGGAAACTTCCCGCCACGACAGAAAAACACACGTATGCCCAGCAGGACAAAAGCCAGTCCGACCAACAGAAGAGAAGCCAAAAAAATTGTAGTCATTTATTGCTATATTTGCGGAATACAAAGGTAAGATTTTCTTACCCACAGAGAAGCACAATTAATAACTCA","","","11608","MFFVSLLFEFFDSIFEIAVMLGFEMLCRMAADSSVLHCLVAAYMGLGKLPATTEKHTYAQQDKSQSDQQKRSQKNCSHLLLYLRNTKVRFSYPQRSTINNS","","TIGR ID: PG0536","hypothetical protein","Periplasm","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-31]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","","","Tue Feb 20 13:59:58 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Feb 20 13:59:58 MST 2001","34540350","","","","","","1","","","PG0536" "PG0489","586995","588452","1458","ATGAACATTACAGATCTCAAACCCACAAAAGTGTGGAAGTTTTTCCACGAAATCACTCAAGTGCCACGTCCTTCCAAGAAAGAAGAGAAGATCCTGGCTTACCTTGTGAAATTTGCAGAAGATCGCAACCTCAAATATCGTACAGACGAGGTAGGCAATCTCGTAATAGAGAAACCGGCAACACCCGGATACGAACACCTCGAAACGGTCATCCTTCAGAGCCATATGGATATGGTATGCGAGAAGAATGCCGATAAGGTTCATGACTTCGAGAACGACCCTATCCGTACCATCATCGATGGTGAATGGTTGCATGCCGATGGTACTACACTCGGTGCCGACAACGGTATCGGTTGTGCTGCCGAATTGGCTATTCTGGATTCTGACGACATAGAACACGGCCCGATCGAATGCCTCTTCACGATGGACGAAGAGACGGGTATGACCGGTGCGATGAACCTAAAGCCCGGATTTTTCAATGGAAAGATCCTGCTCAACCTCGACAGCGAAGACGAAGGAGAGCTCTTCATCGGGTGCGCCGGAGGTATGGGAACCATGGTCGAATTTGCCTACGAAAAGCGCGAAGCGACAGACGACTATCTCTATTTCGAGGTAAAGGTCAGCGGTCTCAAAGGCGGTCACTCCGGAGGAGAGATTCACATCGGTCTCGGCAATGCCAACAAGATCCTGACTCGCTATCTCTATGCTCTTGAGCACGAATTGGATTGGAAGCTCTGCTCTTTCCAGGGAGGAAACCTGCACAATGCCATTCCGCGCGAAGCTCATGCCGTTATCGGCCTGAAGGCTGATCAGAAAGAACGTGCACGAGTTATCTTGAACGAACTCGCTGCTGCAGTGGAGGACGAACTCAAGCGAGTAGATCCGGGTGTGAAGCTCGAAATGAAATCGGTAGGAAAGCCTGCATATCGTATCGATTGTGACACGAAGCGTCGTCTTGTTCGCGCCCTGTATGCTTGCCCTCACGGCGTCTACGGTATGAGCCATGACATCGAAGGTTTGGTGGAAACGTCTTCAAACTTGGCTTCCGTGAAGATGAAAGAAGATGATAAGATCTACGTGGAGACCAGCCAAAGAAGCTCGACATCGTCTCTTATCAGCGATATAGCCAATACAGTGGCATCCGTATTCGAGCTTGCCGATGCTAAAATCAGCTTCCGCGATCCGTACCCCGGATGGAAACCCAATCCCGATTCGCCGATTTTGAAAGCGGCATCTGAGTCGTATGAGCGCATTTTCGGTCGTAAACCTGCTATAAAAGCAATCCACGCAGGTTTGGAGTGTGGTCTCTTCCTGGATAAATACCCCTATCTCGATATGGTTTCATTCGGCCCTACCCTCCGAGATGTGCACTCTCCCGTAGAGAAGATCGAAATCAAGACGGTTCAGCTTTGGTGGGATCACTTGGTAGATATACTGAAGCATATCCCCGCAGCCAAA","5.30","-17.23","54211","MNITDLKPTKVWKFFHEITQVPRPSKKEEKILAYLVKFAEDRNLKYRTDEVGNLVIEKPATPGYEHLETVILQSHMDMVCEKNADKVHDFENDPIRTIIDGEWLHADGTTLGADNGIGCAAELAILDSDDIEHGPIECLFTMDEETGMTGAMNLKPGFFNGKILLNLDSEDEGELFIGCAGGMGTMVEFAYEKREATDDYLYFEVKVSGLKGGHSGGEIHIGLGNANKILTRYLYALEHELDWKLCSFQGGNLHNAIPREAHAVIGLKADQKERARVILNELAAAVEDELKRVDPGVKLEMKSVGKPAYRIDCDTKRRLVRALYACPHGVYGMSHDIEGLVETSSNLASVKMKEDDKIYVETSQRSSTSSLISDIANTVASVFELADAKISFRDPYPGWKPNPDSPILKAASESYERIFGRKPAIKAIHAGLECGLFLDKYPYLDMVSFGPTLRDVHSPVEKIEIKTVQLWWDHLVDILKHIPAAK","586995 588452","TIGR ID: PG0537","aminoacyl-histidine dipeptidase","Cytoplasm, Extracellular","Several hits in gapped BLAST to aminoacyl-histidine dipeptidase sequences, e.g. residues 3-483 are 45% similar to the enzyme from V.cholerae (gb|AAF95423.1|).This sequence is similar to BT1615.","
InterPro
IPR001160
Family
Peptidase M20C, Xaa-His dipeptidase
PR00934\"[79-98]T\"[100-118]T\"[134-151]T\"[158-176]T\"[205-222]T\"[250-269]T\"[428-444]T\"[450-472]TXHISDIPTASE
PIRSF016599\"[2-485]TXaa-His_dipept
TIGR01893\"[6-483]Taa-his-dipept
InterPro
IPR002933
Family
Peptidase M20
PF01546\"[71-481]TPeptidase_M20
InterPro
IPR011650
Domain
Peptidase M20, dimerisation
PF07687\"[205-294]TM20_dimer
noIPR
unintegrated
unintegrated
G3DSA:3.40.630.10\"[8-481]TG3DSA:3.40.630.10
PTHR11014\"[6-302]T\"[395-486]TPTHR11014
PTHR11014:SF2\"[6-302]T\"[395-486]TPTHR11014:SF2
SSF53187\"[6-482]TSSF53187
SSF55031\"[198-307]TSSF55031


","BeTs to 3 clades of COG2195COG name: Di- and tripeptidasesFunctional Class: EThe phylogenetic pattern of COG2195 is --------EB-H----o----Number of proteins in this genome belonging to this COG is 2","***** PR00934 (X-His dipeptidase (M25) signature) with a combined E-value of 2e-74. PR00934A 79-98 PR00934B 100-118 PR00934C 134-151 PR00934D 158-176 PR00934E 205-222 PR00934F 250-269 PR00934H 428-444 PR00934I 450-472","Residues 17-145 are 51% similar to a (PROTEIN HYDROLASE DESUCCINYLASE) protein domain (PD001449) which is seen in PEPD_ECOLI.Residues 147-484 are 39% similar to a (AMINOACYL-HISTIDINE DIPEPTIDASE XAA-HIS X-HIS) protein domain (PD024579) which is seen in PEPD_ECOLI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Feb 21 14:21:08 MST 2001","Mon Dec 8 15:14:59 2003","Mon Apr 2 15:33:40 MDT 2001","Wed Feb 21 14:14:44 MST 2001","Wed Feb 21 14:14:44 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 3-482 are 43% similar to PG0123, a predicted aminoacyl-histidine dipeptidase.","Mon Apr 2 15:33:40 MDT 2001","Wed Feb 21 14:14:44 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 15 to 484 (E-value = 3.5e-27) place PG0489 in the Peptidase_M20 family which is described as Peptidase family M20/M25/M40 (PF01546)","Mon Apr 2 15:33:40 MDT 2001","34540351","","","","","","1","","","PG0537" "PG0490","589283","590668","1386","ATGAACAGGTTTTCAAATCATTGGCCCTGCATCCTCGTGGGGTTTGTACTCTGGTTTGTATCGGCGAGTCGGACTGTGGCACAAAACGCCTCCGAAACGACGGTATCGTACGATACGGATACCGCCGTACTCTCCGAAGCCGATGTGCTTCGGATCGCTCTTAGTGAGAATGCCACAGTGAAAGTGGCCGATATGGATGTGCGCAAACAGGAATATGCACGTAGGGCAGCACGTGCCGATCTCTTCCCGAAAGTAGACCTCAATGGCGTTTACAGCCATACGCTAAAGAAGCAGGTCTTATATATAGATATGCCCGGTTTCAGCAGTAGCGAAGGTATCGAAATGGGGCGTACACACAATACGCAAGGAGGGGTGAACGTCTCCATGCCATTGGTGTCGGCACAGCTTTGGAAAAGCATTGCCATGACCGGAGAACAGCTCGATCTGGCTCTGGAGAAAGCTCGCAGCTCCCGAATCGATTTGGTGGCAGAGGTGAAGAAGGCTTACCTCAGTGTATTGTTGGCCGAGGACTCTTATGGCGTATTCAAGCGCAGCTATGACAATGCTCTGGCCAATTATAAGAACATATCCGACAAGTTCGATCGTGGACTTGTGGCCGAGTATGATAAGATTCGAGCCAATGTACAGGTACGCAACATCGAGCCTAACCTCTTGCAAGCGCAGAACTCCGTAGCCCTTGCTCTCTGGCAGCTCAAGGTCCTGATGAGCATGGAAGTGGAAACTCCGATCAGACTCTCCGGTTCATTGTCCGACTATAAAGAACAAGTCTATACCGGCTATTTTGCCGCCGATACGCTTATTTCCAACAACTCCTCCCTGCGTCAGCTCGATATACAGCGTCGTCTGGCTGTCAGTGCAGACAAGCTGAACAAGTACAGCTTCCTGCCTACACTCAATCTGGGAGGGCAGTACACCTATTCGCTCAACAGCAACGACATCAAATTCTGGGGCGAGGGACAACGCTGGACGCCTTTCTCCACCATATCGCTCAGCCTGTACATTCCTATATTCAATGGAGGCAAACGTCTGTACAACGTGAAGCAAAGTGCTTTATCGATCCGTCAGATCGATCTGCAACGACGCCACATAGAGCAATCCATCCGAATGGGAATCAAGAACCAAAATGACCGTCTGCGTACCTGTATGCAGAGATTTGTGGCCTCGGAAGAGGCTGTCCGAAGTGCAGAAAAGGGCTATCAGATAGCAGAGAAACGCTATCAGACAGGCGAAGGCACTCTCGTCGAGCTCAACGATGCCGATGTGGCTCTTTTGCAGGCTCGACTCAATTATAATCAGGCCATATTCGACTTTATGACCGCAAAGGCCGAATTGGACAAGATGAACGGCATGGGGATTCCCGAACAA","9.30","4.90","52086","MNRFSNHWPCILVGFVLWFVSASRTVAQNASETTVSYDTDTAVLSEADVLRIALSENATVKVADMDVRKQEYARRAARADLFPKVDLNGVYSHTLKKQVLYIDMPGFSSSEGIEMGRTHNTQGGVNVSMPLVSAQLWKSIAMTGEQLDLALEKARSSRIDLVAEVKKAYLSVLLAEDSYGVFKRSYDNALANYKNISDKFDRGLVAEYDKIRANVQVRNIEPNLLQAQNSVALALWQLKVLMSMEVETPIRLSGSLSDYKEQVYTGYFAADTLISNNSSLRQLDIQRRLAVSADKLNKYSFLPTLNLGGQYTYSLNSNDIKFWGEGQRWTPFSTISLSLYIPIFNGGKRLYNVKQSALSIRQIDLQRRHIEQSIRMGIKNQNDRLRTCMQRFVASEEAVRSAEKGYQIAEKRYQTGEGTLVELNDADVALLQARLNYNQAIFDFMTAKAELDKMNGMGIPEQ","589244 590668","TIGR ID: PG0538","possible outer membrane protein; immunoreactive 52kD antigen PG41","Outer membrane, Periplasm","Shares 100% identity with gb|AAD51069.1|AF175716_1 (AF175716), an immunoreactive 52kD antigen PG41 in Porphyromonas gingivalis.Residues 124 to 456 share 22% identity with gb|AAF91468.1| (AF282892), the outer membrane protein TolC in Vibrio cholerae.Residues 44 to 441 share 22% identity with gb|AAC07320.1| (AE000735), a hypothetical protein in Aquifex aeolicus.Other bacterial matches are at lower degrees of similarity.","
InterPro
IPR003423
Family
Outer membrane efflux protein
PF02321\"[46-243]T\"[270-456]TOEP
noIPR
unintegrated
unintegrated
SSF56954\"[44-461]TSSF56954


","BeTs to 3 clades of COG1538COG name: Putative outer membrane proteinFunctional Class: SThe phylogenetic pattern of COG1538 is -----Q-c----uj------xNumber of proteins in this genome belonging to this COG is 4","No significant hit to the Blocks database.","Residues 124-452 are 21% similar to a (HYPOTHETICAL 50.8 KD PROTEIN) protein domain (PD141171) which is seen in O51167_BORBU.Residues 274-451 are 25% similar to a (PROTEIN OUTER MEMBRANE PRECURSOR) protein domain (PD009918) which is seen in O85377_PROMI.Residues 194-441 are 23% similar to a (PROTEIN) protein domain (PD017506) which is seen in O67351_AQUAE.","","Thu Jun 14 10:54:10 MDT 2001","","Thu Jun 14 10:54:10 MDT 2001","Thu Jun 14 10:54:10 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 10:54:10 MDT 2001","Thu Jun 14 10:54:10 MDT 2001","","","Mon Apr 30 15:30:52 MDT 2001","Wed Jun 20 11:01:53 MDT 2001","Mon Apr 30 15:30:52 MDT 2001","","Wed Jun 20 10:56:04 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 43 to 462 share 19% identity with PG0083, a possible alkaline secretion protease.Residues 21 to 456 share 19% identity with PG1455.Residues 167 to 444 share 19% identity with PG0611, a possible outer membrane protein.","Wed Jun 20 10:57:53 MDT 2001","Thu Feb 22 14:42:20 MST 2001","-42% similar to PDB:1WP1 Crystal structure of the drug-discharge outer membrane protein, OprM (E_value = 7.7E_15);-41% similar to PDB:1EK9 2.1A X-RAY STRUCTURE OF TOLC: AN INTEGRAL OUTER MEMBRANE PROTEIN AND EFFLUX PUMP COMPONENT FROM ESCHERICHIA COLI (E_value = 5.5E_13);-41% similar to PDB:1TQQ Structure of TolC in complex with hexamminecobalt (E_value = 5.5E_13);","","","Residues 46 to 243 (E-value = 1.5e-17) place PG0490 in the OEP family which is described as Outer membrane efflux protein (PF02321)Residues 270 to 456 (E-value = 2.2e-18) place PG0490 in the OEP family which is described as Outer membrane efflux protein (PF02321)","Wed Jun 20 10:56:04 MDT 2001","34540352","","Porphyromonas gingivalis polypeptides and nucleic acids.Patent: Australia (AU 98/01023)-PCT 10-DEC-1998; CSL Ltd; 45 Poplar Road; R&D; Parkville, Victoria; Australia;Ross,B.C., Barr,I., Patterson,M., Agius,C., Rothel,L., Margetts,M.,Hocking,D. and Webb,E.","","Thu Feb 22 14:42:20 MST 2001","","1","","","PG0538" "PG0492","590715","591764","1050","ATGAAAAGATCGAATACACTGGGCAGTGCTATCCTCCTCATAGTCCTGCCGTTCCTCATTCTCACGAGCTGCAATGGCAAGAAAGAGAGCCGGCCGTCTGCTGCTGATTCGGCAGCTATGGCAGCCAAATTGGTGGAGACGACTATAGTGAAGACCGACACGCTGAATGAGGTACTGAGTTTCACAGCTACCGTTCGGGCCGAAGTGACCAACAACATTACCCCTCAGATGGGCAATAGAATCGTACGCCTTACGGCCGAAGTAGGTGATCGAGTGGGACGCGGACAGGTGCTCGCCGAGTTGGATCGGAGCCAACTGACCCAGGCCAAAGTACAACTGGAGAATACGCGCACCAATTTCCAGCGTATGGATGAGCTGTACAAAATAGGTGGCATAGCCAAACAGCAGTGGGATGCGCTCAAAACGCAGCTCGACGTGGCCGAGACTACTTACAACAATCTGCTGGAGAACACCGTGCTCCGAAGCCCTATATCCGGTGTGATTACCGCACGCAATTATGATAGCGGCGATATGGCTTCTCCCACGAAACCTATCTATGTGGTAGAACAGATAGCTCCCGTAAAGCTCCGCATCGACGTCTCCGAACAGTATTTCTCTCGCCTGAAAAAGGGTATGCCTGCCACTATTACGGTAGATGCCCTTCAGGGACAAACCTTCGAAGGCAAAATCTCCCTGGTCTATCCCGCCGTGGATGCTTCTACGCATACGATCGGCGTGGAGATACAGATTGCTAATAGGGATCAACTGCTTCGGCCGGGTATGTATGCCCGAGTAAATCTCGATTTTGGCCACAAATCGGCCGTTATGGTAGAAGATTTGGCCGTGGTAAAACAGGTAGGCAGTGGCGAATTCTTTGTCTTTGTAGTGGAAAATGGTAAGGCTGTCCGCCGCATGGTGAAAGTCGGAGCCAGACAAAACGATAGCTATGAGATCATCGAAGGTCTCAATGTGGGCGAGACAGTGGTTACAGCCGGCATGAACAACCTTATGGATGGCCAGTCCGTCAGAATTAAAGAACAAAGCAAACTA","9.50","3.45","38368","MKRSNTLGSAILLIVLPFLILTSCNGKKESRPSAADSAAMAAKLVETTIVKTDTLNEVLSFTATVRAEVTNNITPQMGNRIVRLTAEVGDRVGRGQVLAELDRSQLTQAKVQLENTRTNFQRMDELYKIGGIAKQQWDALKTQLDVAETTYNNLLENTVLRSPISGVITARNYDSGDMASPTKPIYVVEQIAPVKLRIDVSEQYFSRLKKGMPATITVDALQGQTFEGKISLVYPAVDASTHTIGVEIQIANRDQLLRPGMYARVNLDFGHKSAVMVEDLAVVKQVGSGEFFVFVVENGKAVRRMVKVGARQNDSYEIIEGLNVGETVVTAGMNNLMDGQSVRIKEQSKL","590706 591764 [Shorter 652 1050 99]","TIGR ID: PG0539","cation efflux membrane fusion protein","Inner membrane, Outer membrane, Periplasm, Cytoplasm","Numerous hits in gapped BLAST to hypothetical proteins and cation efflux membrane fusion proteins, e.g. residues 28-348 are 25% similar to the precursor protein from P. aeruginosa (AE004680).","
InterPro
IPR006143
Family
Secretion protein HlyD
PF00529\"[69-149]THlyD
TIGR01730\"[45-345]TRND_mfp
noIPR
unintegrated
unintegrated
PS51257\"[1-24]TPROKAR_LIPOPROTEIN
SSF111369\"[56-270]TSSF111369


","BeTs to 8 clades of COG0845COG name: Membrane permeases, predicted cation efflux pumpsFunctional Class: RThe phylogenetic pattern of COG0845 is -----QvCEB-hUJ--ol--xNumber of proteins in this genome belonging to this COG is 6","***** IPB002215 (HlyD family secretion protein) with a combined E-value of 9.2e-09. IPB002215A 67-103 IPB002215B 159-193","Residues 65-247 are 26% similar to a (PROTEIN MEMBRANE FUSION PUTATIVE MTRC EFFLUX TRANSPORTER) protein domain (PD035345) which is seen in O25327_HELPY.Residues 160-342 are 24% similar to a (PROTEIN ATP-BINDING YKNX YVRP) protein domain (PD013310) which is seen in O31710_BACSU.Residues 166-333 are 29% similar to a (PROTEIN MEMBRANE RESISTANCE PRECURSOR) protein domain (PD000988) which is seen in Q9ZHD0_SALTY.Residues 148-238 are 38% similar to a (PROTEIN COILED COIL REPEAT FILAMENT HEPTAD PATTERN CHAIN) protein domain (PD000002) which is seen in O66644_AQUAE.","","Thu Jun 14 10:54:46 MDT 2001","","Thu Jun 14 10:54:46 MDT 2001","Thu Jun 14 10:54:46 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 10:54:46 MDT 2001","Thu Jun 14 10:54:46 MDT 2001","","","Fri Jan 19 09:21:19 MST 2001","Wed Jun 20 10:54:28 MDT 2001","Mon Apr 2 15:43:53 MDT 2001","Wed Jun 20 10:50:14 MDT 2001","Wed Jun 20 10:50:14 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 48-328 share 23% identity with PG1454, a predicted periplasmic protein.Residues 121-342 share 24% identity with PG0612, a possible membrane permease.Residues 40-333 share 22% identity with PG0056, a cation efflux membrane fusion protein.Residues 155-329 share 23% identity with PG0257, a membrane permease.","Wed Jun 20 10:54:28 MDT 2001","Mon Apr 2 15:43:53 MDT 2001","-41% similar to PDB:1T5E The structure of MexA (E_value = 2.5E_12);-41% similar to PDB:1VF7 Crystal structure of the membrane fusion protein, MexA of the multidrug transporter (E_value = 2.5E_12);","","","No significant hits to the Pfam 11.0 database","Wed Jun 20 10:50:14 MDT 2001","34540353","","","","","","1","","","PG0539" "PG0493","591764","594910","3147","ATGAGTATATACGAATCGGCTGTAAAAAAGCCGGTCACAACCATATTGATATTCGTGGCGATAGCTATTTTCGGGCTATTCTCACTGAGTCGTCTTTCCATCGACTTGTATCCCAAGATTGAGACGAGCAATATCATGGTCGTGACCTCCTATGCCGGAGCCAGTGCATCGGACATAGAGAACAACGTTACGAAGGTCTTGGAGAATACGCTTAACGGGGTTAGCAATCTCAAGCACATTACTTCGAAGAGTCGGGAGAATGCTTCCGTCATTACGCTCCAATTCAATGAAGGTGTGGACATCGAAGTGGCTACCAATGATGTGCGCGACAAGCTCGATGCCGTCTCCAACTTCCTGCCCGATGATGTGAACAAACCGATGATCTTCAAGTTCGGTACTGACGATATTCCTATCACCATGCTATCCGTGCAGGCCAAAGAGAGTACGATGGCCCTGTCGAAGATCCTCGAAGACAAGGTCACGAATGCTCTGGCACGCCTTGATGGCGTAGGTGCGGTGAGCATTATGGGTACTGTGAAGCGGGAAATACAAGTGTATTGCGATCCGGCCAAACTGGAAGCATACAACCTGACCGTAGAAGCTGTGAGCCAAATCATATCGGCCGAGAACAAGAATGTACCGGCCGGTCTGATCGATTTGGGCAATAAGACCAGTTCGATCCGCATACAGGGCGAGTTTGCCGATGCACGCCAGCTAAACCAAATCGTAGTGGCCAGCGTGGGCGGTCGCAACGTCTATCTGAGCGATGTGGCTCGTGTGGAGGATACACATGCCGAAAATGAACAGGAGAGCTACAACAATAATGTGCGTGGGGCTATGATTATGATCAACAAACAGTCCGGAGCCAATTCGGTGGCTATCTCCCGTGCTGTCCGCGGTGCTCTGCCCGAGATACAGGCTTCGCTCCCTTCGGATGTGGAACTGGGTACCATTTTCGATACTTCGGACAACATCGTCAATACGATCAATAGTCTGCGCGATACGATTGCTATTACGTTCGTCATCGTTATTCTTGTGGTTCTGTTTTTCCTCGGACGATGGCGTGCCACATTTATCATCGGTCTGACGATCCCTATTTCACTGGTTGCCTCCTTTATCTACCTGATGGCTACAGGCAATACGTTGAATATCATTTCTCTCAGCTCCCTCTCTATCGCTATCGGTATGGTAGTGGACGATGCCATTGTAGTGCTCGAAAACGTAACGACACATATTGAACGGGGCAGCTATCCCAAGCAGGCTGCCATACACGGCACGAACGAAGTGGGGATCTCCGTTATAGCTTCCACGCTGACGATGCTGGCTGTATTCCTCCCATTGACGATGATTCAGGGGCTTACGGGTATCCTTTTCCGTCAGTTGGGTTGGATCGTGAGTATTATCATGATTATCTCTACGGTAGCTGCTCTCAGCCTGACGCCGATGCTCTGTTCGCAGTTGCTTCAGCGCGACAAAAAGCAAGGACGGCTGCAACAAAAGCTCTTTGTCCCGATCGAACGCTTTCTTGATTCTGTAGATCGAGCATATGAGCGTTTCCTGAATTGGACTGTGAGACACAGAACCGTTACGATAGTCAGTGCTTTTATCATTTTTGCAGCAAGTCTGATGATGACACCACTGCTCAAAACCGAATTCTTCCCTCAGTCCGACAATGGCTATATCCAAATTCAGGCAGAATATCCGGTGGGCACGGGAGTCAATCTGCCACGAGCCTTTGCTCTTCGTATGATCGACAGTTGGGAGAAAGAAATACCGGAAATCGACAGAACGAGCTTTAGTGTCGGTCAGGCCGAGGCTTCCAGCATGTTTGCCGCCATGCAGGACAATGGTACGAATATCATCACTTTCCATATCGGTCTTACCGGACGCAACGAGAGAAAACGCTCCATGAACGAAGTGGCCGACCAGATACGTACCATGCTGGATGATTATCCTGAGATTCACAGTTATAAGGTTACTCCGGGCGGAAGCGGTGGCGGTATGGGCGGACAACCCACAGTAAATCTGGATATATACGGTTACGACTTCAATAAAACGGGCGATCTCGCAGAGAGATTCAGTCGTCTGATGAAAGAGGATGCCAGATGTGCCCAAGCGACAATCAGCCGAAAAGACTACGTACCGGAGTATCAATTCGTATTTGATCGTACCAAATTGGCCGAGAACGGGCTGAACAGTACCACGGCTGCCATGTTCCTGCGCAACCGCGTCAATGGCAGGGTGGCATCTACCTATCGCGAAGAAGGCGACGAGTACGATATTCGCGTGCGCTTGGCCCCTGAGTTCAGGCGATCATTGAGGGACTTGGAAAATATCCTCATTTATACGCCTCAGGGCAAAGGTGTTCGTCTGGGAGAGCTGGGTAAAATAGAAGAGCTGTACACTCCTCCCACCATTGAACGAAAGGATCGTCAGCGTGTCGTTATCGTAGCTTCCACGGCTGTCAAAGGAGCTGCATTGAGCGATTTGGTCGAAGTGGCCAAAGAAAAGATTGCTCAACTGGAGATTCCCGACGGGATTGACTACAAAATCAGTGGTACATACGAGGACCAGCAGAAGACATTTGCAGACTTGAGCACCCTTATGCTGCTGATCGTGATACTCGTGTTTATCGTCATGGCAGCACAGTTCGAGAGTCTCGTCGATCCGTTTGTGATCATGTTTTCCATACCGTTTGCTTTCACAGGTGTCATAGTCGGTCTTATCATTACCAATACCACTTTCAGCGCTATGTCCTTTATCGGTCTGATTATGCTGATGGGTATCGTGGTGAAGAACGGTATTGTGCTCATCGATTACACTCGTCTGTGTCGCGAACGCGGTATGGGCATTCTCTCTGCCGTAGTACAAGCCGGCCGCTCACGTTTGCGCCCGGTGCTTATGACTACTCTGACTACCATATTGGGTATGGTACCTATGGCTATCGGAATCGGAGAAGGATCCGAACTATGGCAGCCGATGGGGGTTACTGTGGCATGGGGGCTGTCCGTCTCCACACTGATTACGCTCATTATCGTCCCTACCGTTTATGCCGTATTTGCCTCGAACGGGATGAGGAGACAGCGTAGACTACTGGCCAAGAAGTATGCAAAAAAAGAAAATAAGAGCAGAGTATGGAACAGAAAA","7.20","0.59","115613","MSIYESAVKKPVTTILIFVAIAIFGLFSLSRLSIDLYPKIETSNIMVVTSYAGASASDIENNVTKVLENTLNGVSNLKHITSKSRENASVITLQFNEGVDIEVATNDVRDKLDAVSNFLPDDVNKPMIFKFGTDDIPITMLSVQAKESTMALSKILEDKVTNALARLDGVGAVSIMGTVKREIQVYCDPAKLEAYNLTVEAVSQIISAENKNVPAGLIDLGNKTSSIRIQGEFADARQLNQIVVASVGGRNVYLSDVARVEDTHAENEQESYNNNVRGAMIMINKQSGANSVAISRAVRGALPEIQASLPSDVELGTIFDTSDNIVNTINSLRDTIAITFVIVILVVLFFLGRWRATFIIGLTIPISLVASFIYLMATGNTLNIISLSSLSIAIGMVVDDAIVVLENVTTHIERGSYPKQAAIHGTNEVGISVIASTLTMLAVFLPLTMIQGLTGILFRQLGWIVSIIMIISTVAALSLTPMLCSQLLQRDKKQGRLQQKLFVPIERFLDSVDRAYERFLNWTVRHRTVTIVSAFIIFAASLMMTPLLKTEFFPQSDNGYIQIQAEYPVGTGVNLPRAFALRMIDSWEKEIPEIDRTSFSVGQAEASSMFAAMQDNGTNIITFHIGLTGRNERKRSMNEVADQIRTMLDDYPEIHSYKVTPGGSGGGMGGQPTVNLDIYGYDFNKTGDLAERFSRLMKEDARCAQATISRKDYVPEYQFVFDRTKLAENGLNSTTAAMFLRNRVNGRVASTYREEGDEYDIRVRLAPEFRRSLRDLENILIYTPQGKGVRLGELGKIEELYTPPTIERKDRQRVVIVASTAVKGAALSDLVEVAKEKIAQLEIPDGIDYKISGTYEDQQKTFADLSTLMLLIVILVFIVMAAQFESLVDPFVIMFSIPFAFTGVIVGLIITNTTFSAMSFIGLIMLMGIVVKNGIVLIDYTRLCRERGMGILSAVVQAGRSRLRPVLMTTLTTILGMVPMAIGIGEGSELWQPMGVTVAWGLSVSTLITLIIVPTVYAVFASNGMRRQRRLLAKKYAKKENKSRVWNRK","591764 594910","TIGR ID: PG0540","cation efflux protein","Inner membrane, Cytoplasm","Numerous hits in gapped BLAST to cation efflux proteins, e.g. residues 7-1026 are 48% similar to the protein from Bacillus halodurans (AP001520).This sequence is similar to BT2686.","
InterPro
IPR001036
Family
Acriflavin resistance protein
PR00702\"[10-34]T\"[38-56]T\"[328-351]T\"[355-376]T\"[383-407]T\"[436-459]T\"[461-484]T\"[543-560]TACRIFLAVINRP
PF00873\"[3-1021]TACR_tran
noIPR
unintegrated
unintegrated
SSF82693\"[556-666]TSSF82693
SSF82714\"[181-265]T\"[715-802]TSSF82714
SSF82866\"[288-489]T\"[797-1027]TSSF82866


","BeTs to 8 clades of COG0841COG name: Cation efflux system proteinFunctional Class: PThe phylogenetic pattern of COG0841 is -----QvCEb-hUJ--o---xNumber of proteins in this genome belonging to this COG is 2","***** PR00702 (Acriflavin resistance protein family signature) with a combined E-value of 4.5e-45. PR00702A 10-34 PR00702B 38-56 PR00702C 328-351 PR00702D 355-376 PR00702E 383-407 PR00702F 436-459 PR00702G 461-484 PR00702H 543-560 PR00702E 916-940","Residues 678-844 are 23% similar to a (PROTEIN TRANSMEMBRANE EFFLUX TRANSPORT) protein domain (PD001911) which is seen in O31501_BACSU.Residues 892-1016 are 26% similar to a (PROTEIN MITOCHONDRION TRANSMEMBRANE OXIDOREDUCTASE NAD) protein domain (PD000148) which is seen in O51165_BORBU.Residues 398-541 are 31% similar to a (CATION EFFLUX SYSTEM PROTEIN) protein domain (PD117442) which is seen in P74461_SYNY3.Residues 884-949 are 43% similar to a (PROTEIN TRANSMEMBRANE EFFLUX TRANSPORT) protein domain (PD001797) which is seen in P74693_SYNY3.Residues 956-1010 are 52% similar to a (PROTEIN RESISTANCE TRANSMEMBRANE INNER) protein domain (PD002015) which is seen in P74693_SYNY3.Residues 931-1019 are 50% similar to a (PROTEIN TRANSMEMBRANE MEMBRANE PUTATIVE TRANSPORT INNER) protein domain (PD000801) which is seen in YEGO_ECOLI.Residues 8-244 are 31% similar to a (PROTEIN TRANSMEMBRANE EFFLUX TRANSPORT) protein domain (PD001810) which is seen in O51165_BORBU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Jan 19 09:02:35 MST 2001","Wed Dec 17 11:41:40 2003","Mon Apr 2 15:47:06 MDT 2001","Mon Apr 2 15:47:06 MDT 2001","Mon Apr 2 15:47:06 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 3-1017 share 25% identity with PG0055, a cation efflux protein.","Mon Apr 2 15:47:06 MDT 2001","Mon Apr 2 15:47:06 MDT 2001","-43% similar to PDB:1IWG Crystal structure of Bacterial Multidrug Efflux transporter AcrB (E_value = 6.0E_77);-43% similar to PDB:1OY6 Structural Basis of the Multiple Binding Capacity of the AcrB Multidrug Efflux Pump (E_value = 6.0E_77);-43% similar to PDB:1OY8 Structural Basis of Multiple Drug Binding Capacity of the AcrB Multidrug Efflux Pump (E_value = 6.0E_77);-43% similar to PDB:1OY9 Structural Basis of Multiple Drug Binding Capacity of the AcrB Multidrug Efflux Pump (E_value = 6.0E_77);-43% similar to PDB:1OYD Structural Basis of Multiple Binding Capacity of the AcrB multidrug Efflux Pump (E_value = 6.0E_77);","","","Residues 3 to 1021 (E-value = 6.6e-256) place PG0493 in the ACR_tran family which is described as AcrB/AcrD/AcrF family (PF00873)","Mon Apr 2 15:47:06 MDT 2001","34540354","","","","","","1","","","PG0540" "PG0494","594898","595194","297","ATGGAACAGAAAATGATTTTCATCACCTATAATCAGGCCTACCACGATATTATCATTCGATTGCTCAGCCGATACAACCTCAGAGGATATACCTATTGGGAGACTGTCCGCGGTTGCGGTAGCGATACGGGTGAGCCTCACTTGGGCACTCATGCATGGCCTACGCTCAATGGCGCCCTCATGGTCGTTTGTCCTTCCGAGAAAATGAAAACCATAATGGACGCTCTGCGTATCCTTGACGCCGCTACTCCGGATCAGGGACTTCGCGCCTTTGTTTGGAATATCGAGCAAACAATC","6.80","-0.39","11346","MEQKMIFITYNQAYHDIIIRLLSRYNLRGYTYWETVRGCGSDTGEPHLGTHAWPTLNGALMVVCPSEKMKTIMDALRILDAATPDQGLRAFVWNIEQTI","594898 595194","TIGR ID: PG0541","hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
noIPR
unintegrated
unintegrated
SSF54913\"[3-99]TSSF54913


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Feb 20 14:03:48 MST 2001","","Tue Feb 20 14:03:48 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 20 14:03:48 MST 2001","-61% similar to PDB:2I76 Crystal structure of hypothetical protein TM1727 from Thermatoga maritima (E_value = );-53% similar to PDB:1G59 GLUTAMYL-TRNA SYNTHETASE COMPLEXED WITH TRNA(GLU). (E_value = );-53% similar to PDB:1GLN ARCHITECTURES OF CLASS-DEFINING AND SPECIFIC DOMAINS OF GLUTAMYL-TRNA SYNTHETASE (E_value = );-53% similar to PDB:1J09 Crystal structure of Thermus thermophilus glutamyl-tRNA synthetase complexed with ATP and Glu (E_value = );-53% similar to PDB:1N75 Crystal structure of Thermus thermophilus glutamyl-tRNA synthetase complexed with ATP. (E_value = );","","","No significant hits to the Pfam 11.0 database","Tue Feb 20 14:03:48 MST 2001","34540355","","","","","","1","","","PG0541" "PG0494.1","595273","595590","318","TTGTCTCGCCGTGTCCCCCCCTCATCTCGCATTCGGCTGATTTACGCTCTGGAATTTTCTCGTTTACTGTCCCACAAAACGTGGTGTGAGAACTTTTCTCTTTTGGTCTGGGAAGCAAAAAATTCTCGCGCCACAACGAAAAAGTTCTCGCGCCACTTTTTTCAGAGATATTGCTGTCCGGTAAAATTTCTTCAGCTACTCACCATTCGTAAGCATTTGCAAGCCCATTACCGACCGATGGCGTTGGCTGTGAAGAAAGTCTGGCGTATGGCTGATAGAGCGACAATTATTCGGGCACGTACAGATAGAGGAACGAGG","","","12716","LSRRVPPSSRIRLIYALEFSRLLSHKTWCENFSLLVWEAKNSRATTKKFSRHFFQRYCCPVKFLQLLTIRKHLQAHYRPMALAVKKVWRMADRATIIRARTDRGTR","","NO TIGR ID corresponds to this gene.","hypothetical protein","Periplasm, Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR012456
Family
Protein of unknown function DUF1661
PF07877\"[35-64]TDUF1661
noIPR
unintegrated
unintegrated
signalp\"[1-29]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Mon Mar 26 15:39:25 MST 2001","","Tue Feb 20 14:33:10 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","PG0494.1 residues 15 to 54 are 55% similar to PG1849.1, a hypothetical protein. PG0494.1 residues 26 to 57 are 68% similar to PG1803, a hypothetical protein.","Tue Feb 20 14:33:10 MST 2001","Mon Mar 26 15:39:25 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Mar 26 15:39:25 MST 2001","","","","","","","1","","","" "PG0494.2","595773","595471","303","ATGCAAAACTACACAATCCTATTGTGGATCTTGAATAAAACCTCTTCTATTTACAACGGACACCGTATATTTCTTTATCAGCCTCTCCATATCCTTTGCAATCTTTTGGCCTGTGATTTAAGCGTAGATTTGTGTGCTGGCAATGGACGAATGTCCCATCATGTACGAGGTTTTCTATTCTCACCTCGTTCCTCTATCTGTACGTGCCCGAATAATTGTCGCTCTATCAGCCATACGCCAGACTTTCTTCACAGCCAACGCCATCGGTCGGTAATGGGCTTGCAAATGCTTACGAATGGTGAG","","","11501","MQNYTILLWILNKTSSIYNGHRIFLYQPLHILCNLLACDLSVDLCAGNGRMSHHVRGFLFSPRSSICTCPNNCRSISHTPDFLHSQRHRSVMGLQMLTNGE","","TIGR ID: PG0542","hypothetical protein","Cytoplasm","No hit found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","","","Tue Feb 20 14:05:30 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Feb 20 14:05:30 MST 2001","34540356","","","","","","1","","","PG0542" "PG0494.3","595798","595998","201","ATGAACAGATTAAGGGAAGCATTAAAAGAAAGGGGAATTACTCAAACGGAGCTTTCAACTCGCTTGGGCAAGAGCTTTAATATGGTCAATCTCTATGTTGCCAACAAGCATCAGCCCTCAATTCCTACCCTCTTCCAAATAGCAGAGATTTTGGATATGGACGTAAGAGATCTCTTGGTATCTAACAAGCAACAAAACAAA","0.00","0.00","7740","MNRLREALKERGITQTELSTRLGKSFNMVNLYVANKHQPSIPTLFQIAEILDMDVRDLLVSNKQQNK","","TIGR ID: PG0543","possible transcriptional regulator","Cytoplasm","Numerous but weak hits to predicted and putative transcriptional regulators, including residues 2-65 are 31% similar to gi|9950275|gb|AAG07464.1|AE004823_10 in Pseudomonas aeruginosa, residues 2-59 are 37% similar to a putative repressor protein, >gi|3818506|gb|AAC73053.1 in Rhodococcus sp. X309 and residues 11-67 are 31% similar to gi|13512585|gb|AAK28679.1 in Ehrlichia canis.","
InterPro
IPR001387
Domain
Helix-turn-helix type 3
PF01381\"[4-58]THTH_3
SM00530\"[3-58]THTH_XRE
PS50943\"[4-58]THTH_CROC1
InterPro
IPR010982
Domain
Lambda repressor-like, DNA-binding
SSF47413\"[1-64]TLambda_like_DNA
noIPR
unintegrated
unintegrated
G3DSA:1.10.260.40\"[2-62]TG3DSA:1.10.260.40


","BeTs to 3 clades of COG1396COG name: Predicted transcriptional regulatorsFunctional Class: KThe phylogenetic pattern of COG0593 is --T--qVcEBR---------xNumber of proteins in this genome belonging to this COG is 5","","","Mon Jul 9 14:46:42 MDT 2001","Mon Jul 9 14:46:42 MDT 2001","Mon Jul 9 14:46:42 MDT 2001","Mon Jul 9 14:46:42 MDT 2001","Mon Jul 9 14:47:08 MDT 2001","Mon Jul 9 14:46:42 MDT 2001","Mon Jul 9 14:46:42 MDT 2001","Mon Jul 9 14:47:08 MDT 2001","Mon Jul 9 14:47:08 MDT 2001","Mon Jul 9 14:46:42 MDT 2001","Mon Jul 9 14:46:42 MDT 2001","Mon Jul 9 15:00:17 MDT 2001","Mon Jul 9 15:00:17 MDT 2001","Mon Jul 9 14:53:41 MDT 2001","Mon Jul 9 14:46:42 MDT 2001","Mon Jul 9 14:46:42 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1-67 are 52% similar to PG1067, a hypothetical protein.","Mon Jul 9 14:50:28 MDT 2001","Mon Jul 9 14:46:42 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 4 to 58 (E-value = 7e-12) place PG0494.3 in the HTH_3 family which is described as Helix-turn-helix (PF01381)","Mon Jul 9 14:46:42 MDT 2001","34540357","","","","","","1","Mon Jul 9 14:46:42 MDT 2001","","PG0543" "PG0495","596193","598136","1944","ATGGTGCTTACGGAAGACTTTGGTTATCCACTTTCTCGCATCAAATTGGAGTATGAGGTAACCTTCGGTCGGGAAAAGAAGCGAGCCGACATCGTCATATTCGACAAGCAACAAACAGATAGCCCTTATATCATCATTGAGGTCAAGAAGCCGAAACTCAAGGATGGTAAAGAGCAACTCAAAAGCTATTGCAATGCCACTGGAGCACCCATCGGTGTATGGAGTAATGGCAAGAGCATATCCTATTATCACCGTAAAGACCCTAACTATTTTGAAGACATCAGCAATATCCCGAGAGCTGATCAAAAACTTTCAGATATTCTTTCGGAGCGTTGGACGATAGCAGACCTTATAGAAAAAGATAAGCTCATTAGCGAACGCAAGTCGCTCAAAGACCTTATCCTCGAAATGGAAGACGAAGTGTTGGCAGGAGCTGGGGTGGATGTGTTTGAAGAGGTATTCAAACTTATCTTCACCAAACTTTTTGATGAGATGGAGAGCGGACGCAACAATGAGCGCAACCTCGAGTTTCGCAACTATGGCGATACGGAGACCGAACTCAAAGAGCGCATCCAAAATCTTTTTGATAAAGCTCGTGACAAATGGGAAGGTGTATTCAGCCCCGATGCCAAGATACAGCTGACGCCCTCTCACCTTTCTGTCTGCGTAGCATCGTTGCAGGACGTTAAGCTCTTCAATTCCAATCTTGATGTGGTGGACGAAGCCTTTGAGTATCTCATTAACAAAAGTAGTAAGGGAGAGAAGGGACAGTACTTCACTCCTCGCTACGTTATTGATATGTGTGTGAAGATGCTCAATCCTACGGCGAACGAAAAGATGATAGACACGGCATCGGGCAGTTGTGGCTTTCCCGTGCACACCATTTTCCACGTGTGGGAGAATATCCTTAAAGAAAAGGGCTTGGAGCGTAGCCACCTTTTCACCTTGGAACAAAAGCCTGCCGAGTGTACCGATTATGTGAATGACAATGTGTTTGCCATTGATTTTGACGAGAAGGCGGTACGTGTGGCTCGCACGCTCAATCTCATTGCTGGTGATGGACAGACCAATGTGCTACACCTCAATACGCTCGACTATGAACGATGGGAACAAAACTTAGATAGTGAGGATTGGCAGGACACTTATTTCGAGGGTTGGAAGAAACTCAAAAAGCTTAGAACACGCAAGGACAGTTATCGTGACTTCACCTTCGATATTGTGATGGCTAACCCACCCTTTGCGGGAGAGGTCAAGGAGAGTCGTATACTTGCCAAGTACGATATGAGCCGTAGTATGTCTCTCGAAAAGGTGAAAATAGCCCCTAAGGGAGCAACCATCGTGGAGGGCGAGCCGACCTTTTCTGAAGCTCTCGCTAATACAGGAGAAACCATCTATCAGATGAGTGATGGTACATATCGAAAGACCAAGCTCAAGCAAGCTGGGAATATGAGCCGAGACATCCTCTTTGTAGAGCGTAATCTTGATTTTCTCAAGCCGGGCGGTCGTATGGCTATCGTATTACCTCAAGGGCGTTTTAACAACAGCAGCGACAAAGCTTTGCGCGAATACATTGCCGATCGCTGTCGCATCCTTGCAGTGGTAGGCTTGCATGGCAATGTATTTAAGCCTCATACAGGTACTAAGACGAGCGTACTCTTTGTGCAAAAGTGGGACGAGGAGCTATGCCCACGAGTAGAGGATTACAACATCTTCTTTGCTACCATGCAAGAGCCAAGCAAGGACAATAGTGGCGACAAGATTTATCGCAGCACCACTAACGAGGAGGGCGAGAATGTTCCTTTGCTTGACACCCACGGGCATCTTATCGTTAAGCACGATCTTTTCAACCACGATGGACTGACCGAAGATGGCATAGCTGAAGCCTTTGCAGAGTTCGCTAAGAAAGAGAGACTCTCTTTTTTCGCGGACGCCCCTTTGACGAAG","5.30","-15.35","74314","MVLTEDFGYPLSRIKLEYEVTFGREKKRADIVIFDKQQTDSPYIIIEVKKPKLKDGKEQLKSYCNATGAPIGVWSNGKSISYYHRKDPNYFEDISNIPRADQKLSDILSERWTIADLIEKDKLISERKSLKDLILEMEDEVLAGAGVDVFEEVFKLIFTKLFDEMESGRNNERNLEFRNYGDTETELKERIQNLFDKARDKWEGVFSPDAKIQLTPSHLSVCVASLQDVKLFNSNLDVVDEAFEYLINKSSKGEKGQYFTPRYVIDMCVKMLNPTANEKMIDTASGSCGFPVHTIFHVWENILKEKGLERSHLFTLEQKPAECTDYVNDNVFAIDFDEKAVRVARTLNLIAGDGQTNVLHLNTLDYERWEQNLDSEDWQDTYFEGWKKLKKLRTRKDSYRDFTFDIVMANPPFAGEVKESRILAKYDMSRSMSLEKVKIAPKGATIVEGEPTFSEALANTGETIYQMSDGTYRKTKLKQAGNMSRDILFVERNLDFLKPGGRMAIVLPQGRFNNSSDKALREYIADRCRILAVVGLHGNVFKPHTGTKTSVLFVQKWDEELCPRVEDYNIFFATMQEPSKDNSGDKIYRSTTNEEGENVPLLDTHGHLIVKHDLFNHDGLTEDGIAEAFAEFAKKERLSFFADAPLTK","596001 598136","TIGR ID: PG0544. Reported by Chen et al., 2004, to be highly divergent in ATCC 33277.","conserved hypothetical protein(possible DNA-methyltransferase/type I restriction enzyme EcoIM)","Cytoplasm","Residues 404 to 556 share 25% identity with embCAB49083.1 (AJ248283), a site specific DNA-methyltransferase in Pyrococcus abyssi.","
InterPro
IPR002296
Family
N6 adenine-specific DNA methyltransferase, N12 class
PR00507\"[256-272]T\"[280-294]T\"[404-416]T\"[484-508]TN12N6MTFRASE
InterPro
IPR003356
Domain
N-6 DNA methylase
PF02384\"[234-596]TN6_Mtase
InterPro
IPR007409
Domain
Type I restriction enzyme R protein N terminus
PF04313\"[14-91]THSDR_N
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.150\"[258-556]TG3DSA:3.40.50.150
SSF53335\"[258-560]TSSF53335


","BeTs to 6 clades of COG0286COG name: Type I restriction-modification system methyltransferase subunitFunctional Class: LThe phylogenetic pattern of COG0286 is -Mt-----e-rhUJ-p-----Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 10:55:32 MDT 2001","","Thu Jun 14 10:55:32 MDT 2001","Thu Jun 14 10:55:32 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 10:55:32 MDT 2001","Thu Jun 14 10:55:32 MDT 2001","","Tue Feb 22 13:53:52 2005","Fri Feb 23 16:56:51 MST 2001","Tue Feb 22 13:53:52 2005","Thu Jun 14 10:55:32 MDT 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 166 to 484 share 22% identity with PG1284, a conserved hypothetical protein.","Wed Jun 20 10:46:50 MDT 2001","Tue Feb 22 13:53:52 2005","No significant hits to the PDB database (E-value < E-10).","","","Residues 14 to 91 (E-value = 4e-06) place PG0495 in the HSDR_N family which is described as Type I restriction enzyme R protein N terminus (HSDR_N) (PF04313)","Wed Jun 20 10:45:07 MDT 2001","34540358","","Chen T, Hosogi Y, Nishikawa K, Abbey K, Fleischmann RD, Walling J, Duncan MJ.Comparative whole-genome analysis of virulent and avirulent strains of Porphyromonas gingivalis.J Bacteriol. 2004 Aug;186(16):5473-9.PMID: 15292149","","Tue Feb 22 13:53:52 2005","","1","","","PG0544" "PG0496","598184","600286","2103","TTGTCTAAGCTAGAATATTTCAGAATAGATGCAGAACTATATGACCGTACATACCTGAGTTATAGACGTAAGATTGAGGCTTTGCAATACACAACCCTGCAGAAAGAATGCAAAGTGGTAAGAAAAGGTATTTTCAATGTGAATGCAGGTAATTTTTCCGACAGCGGAGTCCCCTTTGTTCGTATCTCTAACTTGAAGGGGATGAAAATTAATACCACAGACATTGTCTGTATCCCTAGAGCAATACATGACGATAATCATAAAACAGCTCTCGTTAGAAATGATATAATACTCTCGAAAACAGCAATACCTGCAGCATCTATAGTGAGTATTGATGAATGTAACACATCTCAAGATACTGTTGCTGTTAAGTTAGCTCTAAATAGCAAATTAAACTCCCCCTATCTTGTAACGTTCTTGAATACAAAATATGGAATGGAGCAAATGAAAAAGCGATTCTCTGGCAATGTCCAAATGCATCTCAATTTGGACGAATGCAGGAATGAGTTACTTGTACCTGTTTTAAGTGCTGAGATACAAATGCAGGTTAAAGAGCTGTTTGAATTATCCATGCAAAAGTCGACAGAGGGAATATCCCTCTACTCCTCTGCTGAGAGCTATCTATTGGCGTGCTTAGGGATGCAAGACTTTGTAGCCAATATAGATGCTTACAACGTAAAGACACTCAAAGAGAGCTTCCTTGAAAGTGGACGCATTGATGCAGAGTATTATTTGCCTAAGTATGAGGATTACATCAATGCAGTATCGGCATACACTGGCGGTGTCGCTCCTCTTGGTGAGGTCTGCACCATTAAAGACAGCAACTATACGCCAGAATGTGATATGAAGTATCGCTACATTGAGTTGGCTAATATTGGCAAGTCGGGCGACATTACAGGCTGTTTGTACGAAAATGGTGAAGACCTGCCCACACGTGCAAGGCGTATCGTAACCCAAGGCGATGTGATTGTTTCATCTATAGAGGGGTCTTTGAGTAGTTGTGCATTGATAACGGACGATTATGACCAATCGCTCTGCTCGACTGGCTTCTATGTTGTGCGCTCAAATCAAATCAATCCAGAGACATTGCTAACGCTTTTCAAGTCCCTACCTATACAGCAACTACTCAAAAAAGCTTGTTCGGGAACAATCCTTACAGGTATTGGTAAGCAGGAGTTTGAGAAAATTCCCATTCCTCTCATTCGTCCCGAAGTGCAAGAAGAAATCGCCCAACACGTACAGCGTAGTTTCGCTCTACGCAAGGAAGCTTCGGAACTTCTTGAAAAAGCGAAACTTAGCGTAGAATACGCAATCGAAACGGGGGGGGGTAATTCGCTGATATACAGTGGGTTACTCAACACGTTAGCAAAATATGAACGATTAGCAATGTGGCTATTGCTTAAAGAATTGGGCATAGTGGATGAGTCGCCAAATCGTCAAAGGGTAGTTACCACAGAAAAACGTCTGTCGGAGTCGTTCTTCACCAGTGGAAGATTGGATGCAGAGTATTATCAACCCAAGTACGATTATCTTGATGCGCAATTTTCCTCCATACCAACGAAACGATTGGGTGATATAGTGAATATACATAAATCCATAGAGCCGGGTAGCGATGCTTATCAAGAAAATGGGATACCTTTTGTAAGAGTAGCCGACCTAAGTAAATTTGGTATAGAGACTTCAAGTATTTGTTTAGATAGCTCTACTTATTCCACAGCTCCACGACCTCGTAAAAATACCATTCTTCTCTCAAAAGATGGTAGTGTAGGTATTGCTTATAAGATGGAGGAAGATGCTGACATTATTACCTCAGGAGCAATATTGCATCTTAGTATGAAGGGAAAAGAACTTTTACCCGATTATCTTACTCTTGTCCTCAATTCGCCAATTGTGCGAATGCAAGCAGAGCGAGATGCTGGAGGTTCTATTATTCAGCATTGGAAGCCCTCGGAAATATCCCAAGTGATAATCCCTATGCTCCCTGTTTATATACAGCAAAAACTCTCGGATTTGGTGTCCAAGAGTTTTGCTTTCCGCAGAGAATCCAAAGCTTTACTTGAGCGAGCCAAAGCTATGGTTGAACAGGCTATAGAGTTCTCTGCC","5.80","-6.81","78390","LSKLEYFRIDAELYDRTYLSYRRKIEALQYTTLQKECKVVRKGIFNVNAGNFSDSGVPFVRISNLKGMKINTTDIVCIPRAIHDDNHKTALVRNDIILSKTAIPAASIVSIDECNTSQDTVAVKLALNSKLNSPYLVTFLNTKYGMEQMKKRFSGNVQMHLNLDECRNELLVPVLSAEIQMQVKELFELSMQKSTEGISLYSSAESYLLACLGMQDFVANIDAYNVKTLKESFLESGRIDAEYYLPKYEDYINAVSAYTGGVAPLGEVCTIKDSNYTPECDMKYRYIELANIGKSGDITGCLYENGEDLPTRARRIVTQGDVIVSSIEGSLSSCALITDDYDQSLCSTGFYVVRSNQINPETLLTLFKSLPIQQLLKKACSGTILTGIGKQEFEKIPIPLIRPEVQEEIAQHVQRSFALRKEASELLEKAKLSVEYAIETGGGNSLIYSGLLNTLAKYERLAMWLLLKELGIVDESPNRQRVVTTEKRLSESFFTSGRLDAEYYQPKYDYLDAQFSSIPTKRLGDIVNIHKSIEPGSDAYQENGIPFVRVADLSKFGIETSSICLDSSTYSTAPRPRKNTILLSKDGSVGIAYKMEEDADIITSGAILHLSMKGKELLPDYLTLVLNSPIVRMQAERDAGGSIIQHWKPSEISQVIIPMLPVYIQQKLSDLVSKSFAFRRESKALLERAKAMVEQAIEFSA","598151 600286","TIGR ID: PG0545","hypothetical protein (possible type I restriction enzyme)","Outer membrane, Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR000055
Domain
Restriction modification system DNA specificity domain
PF01420\"[518-667]TMethylase_S
InterPro
IPR002160
Family
Proteinase inhibitor I3, Kunitz legume
PS00283\"[337-353]?SOYBEAN_KUNITZ


","BeTs to 5 clades of COG0732COG name: Restriction endonuclease S subunitsFunctional Class: LThe phylogenetic pattern of COG0732 is aMt-----e-rHUJgP-----Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 10:56:13 MDT 2001","","Thu Jun 14 10:56:13 MDT 2001","Thu Jun 14 10:56:13 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 10:56:13 MDT 2001","Thu Jun 14 10:56:13 MDT 2001","","","Thu Apr 5 19:18:22 MDT 2001","","Thu Apr 5 19:18:22 MDT 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 20 14:25:52 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 518 to 677 (E-value = 7.6e-05) place PG0496 in the Methylase_S family which is described as Type I restriction modification DNA specificity domain (PF01420)","Wed Jun 20 10:36:00 MDT 2001","34540359","","","","","","1","","","PG0545" "PG0497","600854","602047","1194","TTGCGATACCCAATCATGAATAACTTTTTCAAAATACACGACAACTTGCTACGCAACCTATCCCCTTCGCTGCGTAGGGGATTGATGGACGAGATCGATTGGAACGATAGACTGATCGGTATCAAGGGTGCACGAGGCATGGGAAAAACCACATTCCTCCTCGACTATGCACGCGAAAACTTCGGTATAGGCAATAGAAAATGCCTGTATATCAATCTGAATCAACTCTATTTCACCACAGAATCTTTGGTGAACTTCGCCGGTGAGTTTGTCAAGCAAGGAGGAGAGGTACTGCTACTTGACCAAGTATTCAAATATCCCAATTGGTCTATAGAGCTGCGTCAGTGTATGGAGCTATACCCGGACTTACGCATTGTCTTTACGGGGTCTACGGTGATGCGCCTGAAAGAAGAAAATCCCGAGCTGAACGGACTGGTTACATCGTACGTTCTGAACGGTTTTTCATTCCGCGAATTTCTCAATCTCAAAACAGGGCTGTCGCTTCAGCCTTACAGCTTCGATGAGATTGTATCCAACCACGAACAGATAGCTCCGCGAATCCTCGAGCAGGTGAACCCTCTCGACTGGTTTCAGGACTATCTTCACCATGGATACTACCCCATATTCCTGGAGGATAAGAACTATTCGGAGAGTCTGCTGAAAACGCTCAATATGACGCTTGAAGTAGATGTGCTTTTCATCCGACAGATCGAGCAGCGATTCCTGCACAAACTGCGCAAGCTACTCTACCTACTGGGACAACGTGCTCCCGGCTCGCTCAATATATCGAGCATTGCGAAGGAAGTGGACACTTCTCGTACGACGATAACCAACTATCTGAAGTACCTGTCCGAAGCCAGACTGATCAAGGAGCTTCACCGCGAAGAGGAGACGGGTGCCAAGAAGCCGGCTATGATCTATCTGGACAATACCAATGTGGGATACGTAATCCAGCCGGAACCTCTCAACTATATAGACGTACTCAAAACATTCTTCCTCAATCAGGTCAAGAGTCGCAACGAAGTATGTTTGGGATCTCGCTCTCAAATCGCATTCTGCGTGAATCGCCAATATCAGTTCTGCATCGATGAGAAGATGAGCCGTCGCTACAGACCCGACCGCTACTATGCCATCCAGAACATGCGCAGCGGTACGCGCAACATGATCCCCCTCTGGCTCTTCGGATTCCTGTAC","8.90","6.23","46841","LRYPIMNNFFKIHDNLLRNLSPSLRRGLMDEIDWNDRLIGIKGARGMGKTTFLLDYARENFGIGNRKCLYINLNQLYFTTESLVNFAGEFVKQGGEVLLLDQVFKYPNWSIELRQCMELYPDLRIVFTGSTVMRLKEENPELNGLVTSYVLNGFSFREFLNLKTGLSLQPYSFDEIVSNHEQIAPRILEQVNPLDWFQDYLHHGYYPIFLEDKNYSESLLKTLNMTLEVDVLFIRQIEQRFLHKLRKLLYLLGQRAPGSLNISSIAKEVDTSRTTITNYLKYLSEARLIKELHREEETGAKKPAMIYLDNTNVGYVIQPEPLNYIDVLKTFFLNQVKSRNEVCLGSRSQIAFCVNRQYQFCIDEKMSRRYRPDRYYAIQNMRSGTRNMIPLWLFGFLY","600854 602047","TIGR ID: PG0547","conserved hypothetical protein (possible AAA superfamily ATPase)","Cytoplasm","One significant hit and a few weak hits in gapped BLAST; e.g. residues 34-398 are 22% similar to gb|AAD36340.1|AE001782_1 conserved hypothetical protein of Thermotoga maritima, residues 37-337 are 25% similar to emb|CAB50352.1| hypothetical protein of Pyrococcus abyssi, residues 43-290 are 21% similar to emb|CAC11862.1| conserved hypothetical protein of Thermoplasmaacidophilum.This sequence is similar to BT1746.","No hits reported.","BeTs to 3 clades of COG1373COG name: Uncharacterized ATPases of the AAA superfamilyFunctional Class: RThe phylogenetic pattern of COG1373 is -M-K--V---Rh---------Number of proteins in this genome belonging to this COG is 3","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Apr 6 12:26:36 MDT 2001","Mon Dec 8 16:03:59 2003","Tue Mar 27 14:30:33 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 20 14:21:31 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Mar 27 14:30:33 MST 2001","34540361","","","","","","1","","","PG0547" "PG0498","602239","605817","3579","ATGGCTAAAGAAAAAAAATTCCTAACTTGTGACGGGAACCAAGCCGCTGCGCATATTGCTTATATGTTCAGCGAAGTGGCTGCCATTTATCCGATTACACCTTCGTCTACAATGGCTGAGTATGTGGACGATTGGGCTGCTGCCGGCCGTAAAAACATTTTCGGCGAAACGGTAAGAGTCCAGGAGATGCAAAGTGAAGCCGGTGCAGCCGGTGCAGTTCACGGCTCGTTGCAGGGAGGAGCACTAACCACAACCTTTACGGCATCACAGGGCCTATTGCTCATGATTCCGAATATGTACAAAATTGCGGGAGAGTTGCTACCTTGTGTTTTCCACGTTTCGGCACGTACTATTGCCTCCCATGCCCTCTCTATCTTCGGAGACCATCAGGATGTCATGGCTGCACGTCAGACCGGCTTTGCTCAGCTCTGTACCGGATCCGTGCAGGAAGTCATGGATCTGGCCGGCGTGGCACACTTGGCAACGCTACGTACTCGCATCCCCTTCATTCACTTCTTCGATGGTTTCCGAACCTCTCATGAGATTCAGAAAATCGAAGCTCTCGACAATGAAGACTTAGCCCGGTTCATCGATTGGGACGATGTAAAGCGTTTCCGCAAGCAAGCTCTCAATCCTGAGTCGCCCGTAACTCGTGGCACAGCACAGAACGGCGACATCTATTTCCAGAACCGCGAAGCATGTAACCGCTTCTACGATGCAGTGCCCGAAGCTGTTCAGTATTATATGGATCAGCTGGCTACGGTTACCGGGCGCCACTACCATCTGTTCGACTATTACGGAGATCCCGAAGCCGAGCATGTGATTATTGCCATGGGTTCGGTGACAGAAGCTATTCGCGAAGTGATAGACTTCCTCCGTGCCAAAGGAGAGAAAGTCGGACTGCTCAGCGTGCACCTGTACCGTCCTTTCAGTGCCAAGCACTTCCTTGCCGCTATGCCGAAGACGGTGAAGCGCATAGCTGTACTCGACAGGACAAAAGAGCCCGGAGCAACGGGCGAACCGCTCTACCTCGATGTAAGGGATTGCTATTATGGCATGGAAGATGCTCCGTTGATTGTGGGTGGTCGCTACGGTCTTTCTTCCAAGGATACTACTCCGGCACAGATGAAGGCCGTATTCGACAATCTGAAACTGAATGTCCCGAAGGATCATTTCACTGTAGGTATCGTCGATGACGTTACTTTCACCTCTCTGCCTCTCGGCGAAGATCTGATCTTCGACAATCCGTCGTTGGTAGAAGCCAAATTCTACGGACTCGGTGCCGATGGTACTGTCGGAGCCAACAAGAACTCGGTAAAAATTATCGGTGACAATACGAATAAATACTGTCAGGCTTACTTCGCTTACGACTCGAAGAAATCGGGTGGATTCACCTGCTCGCACCTTCGTTTCGGCGATACGCCCATACGTTCTACCTACCTTGTGGTGACACCGGACTTCGTGGCTTGCCACGTGCCTGCCTACTTGCGTATGTACGACGTGCTGAAAGGTCTGAAGAAAAAAGGAACTTTCCTGCTCAATTCGATTTGGGCTCCGGAAGATATAGAACAGCATCTGCCCAACAAGGTAAAGCGTTATTTGGCTAAGAACAACATCCGATTCTACACGATTAACGCTACTGCCATAGCACAACAGATCGGATTGGGCAACAGGACAAATACCATCCTTCAGTCGGCATTCTTCAAGATTGCAAACGTGATCCCGTACGATCTGGCTGTAGAGCAGATGAAGAAATTCATCGTCAAGAGTTATGGCAAGAAGGGTGAAGATGTAGTCAATAAGAACTTCGCCGCAGTGGATCGAGGTGGCGATGTGGTAGAGATAACGGTGAAACCCGAATGGGCTGACCTGCCCGACGATCCCGTGGTACGCCACGAGGGAGACACGGACTTTGTCCACAACGTGGTACGTCCGATCAACGCACAAGCCGGAGACGACCTCCCCGTATCCGCTTTCCTCGGACGCGAAGACGGTACATGGGATTCAGGAACGGCCGCTTCCGAAAAACGCGGTGTGGCAGCTTTCGTTCCTGTATGGGAAGCTGACAACTGTGTACAGTGCAACCAGTGTGCCTACGTTTGTCCTCACGCTACGATTCGTCCGTTCGTCCTCACCAAGGAAGAAGAGGAGAAAACCGGCGTCAAGGTGCTCAAGGCTGTCGGAAAACAGTTCCCAGACATGGGCTTCCGCATTCAGGTGAACGTAATGGACTGTCTCGGCTGTAGCAACTGTGTGGATGTATGTCCGGGCAATAAGAATGGCAAGGCTCTGACCATGCAGCCTATCGAGGAGCAGTACGAAGAACAAAAGAACTGGGATAAGATGATCTCCGGTGTGACCGGCAAGGCTCACTTGGTGGACATCGCAGCCAATGTGAAGAACTCGCAGTTTGCGACGCCGCTCTTTGAGTTCTCGGGTGCATGTTCCGGTTGCGGTGAGACTCCCTATGTGAAGCTGATCACCCAGCTCTATGGAGACCGCCAGACAGTGGCCAACGCTACAGGTTGTTCTTCCATCTACTCTGCTTCGGCTCCTTCTACACCTTACACGAAGAACGAGCGCGGCGAAGGCCCGGCATGGGCCAATTCATTGTTCGAGGACAATGCAGAATTCGGTCTCGGTATGCACTTGGCATATAAGAAGATGCGTCGCCGCCTTGTGAATCTTGCAGAAGAAGCTCAGCAGTCTCCCTGCTGTTCGGACGAGCTGAAAGCTCTCTTGAGAGAATGGGTAGAAAAGCGTCAGGATGCTGTCGCCAGCAAAGTTCTTGCCGATAAGATCAAACCTCTTGTCGCTGCCTGCGATTGTGACATCTGCAAGAGAATCGGCCGTGTCGATTCGTTCTTCATCAAGCGTGCACAGTGGATCATAGGTGGAGACGGTTGGGCATACGATATCGGTTTCGGTGGTTTGGACCATGTGATTGCATCCGGTATGAATGTGAATATCCTCGTTCTCGATACAGAGGTTTATTCCAATACGGGAGGACAGTCGTCCAAGAGTACTCCGATCGGAGCTATAGCCAAGTTTGCCGCAGCCGGTAAGCGTATCAGGAAGAAAGACCTCGGTATGATTGCTGCTACGTATGGCTATGTCTATGTGGCACAAGTATCTATCGGAGCCAATCCGGCACAGACGCTCAAAGCTATCCGCGAAGCGGAAGCCTACGACGGGCCTTCTATCGTTATCGCCTACTCGCCCTGTATCTCACACGGTATCAAGAGCGGTATGGGCAAGACTCAGGCCGAAGGCAAGAGAGCCGTTGAGTGTGGCTACTGGCACCTCTGGCGCTACAATCCCGAACTGGAGAAAGAGGGTAAGAATCCGTTCCAGATGGATAGCAAAGAGCCGAACTGGAGCGAATTCAAGAACTTCCTCAAAGGCGAAGTCCGCTATGCATCGCTGTACAAGGAATTCCCCGAGGATGCCGAGCAACTCTTCGACGCTGCGTTCGAAAATGCCCAATGGCGCTATCGTAACTACATGCGTATGAGTGCGGCAGACTGGTCGTTGCCTCTTGGTATTCAGGACATCAAGGAAGAAAAAGACTGCGATCAC","6.50","-8.90","131924","MAKEKKFLTCDGNQAAAHIAYMFSEVAAIYPITPSSTMAEYVDDWAAAGRKNIFGETVRVQEMQSEAGAAGAVHGSLQGGALTTTFTASQGLLLMIPNMYKIAGELLPCVFHVSARTIASHALSIFGDHQDVMAARQTGFAQLCTGSVQEVMDLAGVAHLATLRTRIPFIHFFDGFRTSHEIQKIEALDNEDLARFIDWDDVKRFRKQALNPESPVTRGTAQNGDIYFQNREACNRFYDAVPEAVQYYMDQLATVTGRHYHLFDYYGDPEAEHVIIAMGSVTEAIREVIDFLRAKGEKVGLLSVHLYRPFSAKHFLAAMPKTVKRIAVLDRTKEPGATGEPLYLDVRDCYYGMEDAPLIVGGRYGLSSKDTTPAQMKAVFDNLKLNVPKDHFTVGIVDDVTFTSLPLGEDLIFDNPSLVEAKFYGLGADGTVGANKNSVKIIGDNTNKYCQAYFAYDSKKSGGFTCSHLRFGDTPIRSTYLVVTPDFVACHVPAYLRMYDVLKGLKKKGTFLLNSIWAPEDIEQHLPNKVKRYLAKNNIRFYTINATAIAQQIGLGNRTNTILQSAFFKIANVIPYDLAVEQMKKFIVKSYGKKGEDVVNKNFAAVDRGGDVVEITVKPEWADLPDDPVVRHEGDTDFVHNVVRPINAQAGDDLPVSAFLGREDGTWDSGTAASEKRGVAAFVPVWEADNCVQCNQCAYVCPHATIRPFVLTKEEEEKTGVKVLKAVGKQFPDMGFRIQVNVMDCLGCSNCVDVCPGNKNGKALTMQPIEEQYEEQKNWDKMISGVTGKAHLVDIAANVKNSQFATPLFEFSGACSGCGETPYVKLITQLYGDRQTVANATGCSSIYSASAPSTPYTKNERGEGPAWANSLFEDNAEFGLGMHLAYKKMRRRLVNLAEEAQQSPCCSDELKALLREWVEKRQDAVASKVLADKIKPLVAACDCDICKRIGRVDSFFIKRAQWIIGGDGWAYDIGFGGLDHVIASGMNVNILVLDTEVYSNTGGQSSKSTPIGAIAKFAAAGKRIRKKDLGMIAATYGYVYVAQVSIGANPAQTLKAIREAEAYDGPSIVIAYSPCISHGIKSGMGKTQAEGKRAVECGYWHLWRYNPELEKEGKNPFQMDSKEPNWSEFKNFLKGEVRYASLYKEFPEDAEQLFDAAFENAQWRYRNYMRMSAADWSLPLGIQDIKEEKDCDH","602239 605817","MD oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase.TIGR ID: PG0548","pyruvate ferredoxin/flavodoxin oxidoreductase","Periplasm, Cytoplasm","Residues 1 to 1177 share 56% identity with emb|CAB43933.1| (Y17726), a pyruvate ferredoxin oxidoreductase in Clostridium pasteurianum.Residues 6 to 1175 share 56% identity with emb|CAA31501.1| (X13109), a pyruvate-flavodoxin oxidoreductase in Klebsiella pneumoniae.Residues 9 to 1177 share 57% identity with emb|CAB73898.1| (AL139078), a pyruvate-flavodoxin oxidoreductase in Campylobacter jejuni.There are numerous other bacterial genera that have high degreees of identity with this same region for pyruvate ferredoxin/flavodoxin oxidoreductases. ","
InterPro
IPR001450
Domain
4Fe-4S ferredoxin, iron-sulfur binding
PF00037\"[684-707]T\"[738-765]TFer4
PS00198\"[691-702]T\"[745-756]T4FE4S_FERREDOXIN
InterPro
IPR002869
Domain
Pyruvate ferredoxin/flavodoxin oxidoreductase
PF01558\"[427-611]TPOR
InterPro
IPR002880
Domain
Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal
PF01855\"[18-250]TPOR_N
InterPro
IPR009014
Domain
Transketolase, C-terminal-like
G3DSA:3.40.50.920\"[261-417]TTransketo_C_like
SSF52922\"[261-417]TTransketo_C_like
InterPro
IPR011766
Domain
Thiamine pyrophosphate enzyme, C-terminal TPP-binding
PF02775\"[962-1071]TTPP_enzyme_C
InterPro
IPR011895
Family
Pyruvate:ferredoxin (flavodoxin) oxidoreductase
PIRSF000159\"[3-1181]TNifJ
TIGR02176\"[7-1173]Tpyruv_ox_red
noIPR
unintegrated
unintegrated
G3DSA:3.30.70.20\"[671-787]TG3DSA:3.30.70.20
G3DSA:3.40.50.970\"[4-260]T\"[798-1175]TG3DSA:3.40.50.970
G3DSA:3.40.920.10\"[417-626]TG3DSA:3.40.920.10
SSF52518\"[4-260]T\"[789-1173]TSSF52518
SSF53323\"[417-670]TSSF53323
SSF54862\"[671-822]TSSF54862


","BeTs to 10 clades of COG0674COG name: Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunitFunctional Class: CThe phylogenetic pattern of COG0674 is AMTKYQVce-r-UJ---l---Number of proteins in this genome belonging to this COG is 4","***** PF01558 (Pyruvate ferredoxin/flavodoxin oxidoreductase) with a combined E-value of 2.9e-95. PF01558A 74-125 PF01558B 963-1017 PF01558C 1094-1116***** PF01855 (Pyruvate flavodoxin/ferredoxin oxidoreductase (N terminus)) with a combined E-value of 7.9e-19. PF01855A 25-38 PF01855B 220-232 PF01855C 270-279 PF01855D 299-310","Residues 68-231 are 70% similar to a (OXIDOREDUCTASE SUBUNIT PYRUVATE ALPHA) protein domain (PD001493) which is seen in P94692_DESAF.Residues 419-608 are 53% similar to a (OXIDOREDUCTASE PYRUVATE SUBUNIT GAMMA) protein domain (PD001746) which is seen in P94692_DESAF.Residues 326-383 are 67% similar to a (OXIDOREDUCTASE PYRUVATE IRON-SULFUR) protein domain (PD006382) which is seen in NIFJ_KLEPN.Residues 5-66 are 72% similar to a (OXIDOREDUCTASE PYRUVATE SUBUNIT ALPHA) protein domain (PD001774) which is seen in P94692_DESAF.Residues 269-321 are 64% similar to a (OXIDOREDUCTASE PYRUVATE SUBUNIT ALPHA) protein domain (PD150584) which is seen in NIFJ_ENTAG.Residues 948-1074 are 28% similar to a (PROTEIN OXIDOREDUCTASE HEME IRON-SULFUR) protein domain (PD018518) which is seen in O14167_SCHPO.Residues 1076-1168 are 56% similar to a (IRON-SULFUR OXIDOREDUCTASE PYRUVATE) protein domain (PD008575) which is seen in NIFJ_KLEPN.Residues 188-267 are 38% similar to a (PYRUVATE:FERREDOXIN PROPROTEIN PRECURSOR TRANSIT PEPTIDE) protein domain (PD190783) which is seen in Q27089_TRIVA.Residues 958-1006 are 83% similar to a (OXIDOREDUCTASE PYRUVATE SUBUNIT IRON-SULFUR BETA) protein domain (PD119378) which is seen in NIFJ_SYNY3.Residues 637-940 are 49% similar to a (IRON-SULFUR OXIDOREDUCTASE PYRUVATE) protein domain (PD005899) which is seen in NIFJ_KLEPN.Residues 1009-1075 are 47% similar to a (OXIDOREDUCTASE PYRUVATE SUBUNIT BETA) protein domain (PD001502) which is seen in O83909_TREPA.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Tue Mar 13 16:36:49 MST 2001","Thu Feb 22 14:22:42 MST 2001","Thu Feb 22 14:22:42 MST 2001","Fri Mar 9 16:04:36 MST 2001","Thu Feb 22 14:22:42 MST 2001","Thu Feb 22 14:22:42 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 12 to 313 share 21% identity with PG1583.","Thu Feb 22 14:22:42 MST 2001","Thu Feb 22 14:22:42 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 18 to 250 (E-value = 1.2e-118) place PG0498 in the POR_N family which is described as Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-binding domain (PF01855)Residues 427 to 611 (E-value = 1.5e-72) place PG0498 in the POR family which is described as Pyruvate ferredoxin/flavodoxin oxidoreductase (PF01558)Residues 684 to 707 (E-value = 1.8e-05) place PG0498 in the Fer4 family which is described as 4Fe-4S binding domain (PF00037)Residues 813 to 1078 (E-value = 1.5e-107) place PG0498 in the TPP_enzyme_C family which is described as Thiamine pyrophosphate enzyme, C-terminal TPP binding domain (PF02775)","Fri Mar 9 16:04:36 MST 2001","34540362","","","","","","1","","","PG0548" "PG0499","607163","606081","1083","ATGGCATACCAATCCAAGAATACCGATGAGCATGTAACATTTGCAGACGCACTCCTTTCAAAGCGTTATCGCAAAGCACAAAACGACTTCCTCAATCAGGTTGAGAGGCTTATCGATTGGCGTCCGATCAGGACGCTGATCAACAAGAAATACACGAAGCGACAAAATGCCATCGGCGCCCCGGCTTATGACGTGATTCTCTTATTCAAGATGTTGCTTTTGGAGACATGGTACAACCTCAGTGATTGTGCTTTGGAGGAGCGCATCAATGATTCAATCACCTTTTCCCGATTCTTGGGACTGAAGATGGAAGAGGTATCTCCCGACCACAGCACCATCAGTCGATTTCGTTCGGCACTGACAGAGTTGGGGCTCATGGACAAACTATTGGCGCAGTTTAACAAACAACTTTCCCGCCATCACATTTCGGTCAGGGAAGGGGTGCTTGTCGATGCAAGCCTTGTGGAGACGCCACATAAACCCAACGGAACCATTACGATTGAAGTCGCAGACGACAGAGAAGACAATCGGAGCGAGGCGGAAAAAGAGGCAGAGGAGGATTATCAAAAACAGGTTGTCCGCCGGCGTAAAGGGACGGATGAAGAAGCCCGTTGGGTGTACAAACAAAAGCGTTATCACTACGGATACAAAAAGCATTGTCTGACCAATGTTCAAGGCATTGTTCAAAAGGTGATAACGACAGCAGCGAACCGCAGTGACACGAAGGAGTTTATTCCGCTATTGCAGGGTGCAAACATACCTCAAGGCACAGCCGTCTTGGCGGACAAAGGATATGCTTGCGGGGAAAATCGTTCCTACCTGCAAACCCATCACCTTCAAGACGGCATCATGCACAAGGCACAACGCAACAGGGCATTGACCGAGGAAGAGAAGCAAGGAAACAAAGCAATCAGTCCGATACGGAGCACCATCGAACGCACCTTTGGCAGTATTCGCCGGTGGTTTCATGGCGGACGATGTCGATACCGGGGACTTGCCAAGACCCATACTCAAAACATTCTTGAAAGCATCGCCTTTAATTTATACAGAACCCCGGGGATAATTATGTCCTCATCTCTAGGA","10.20","14.72","41575","MAYQSKNTDEHVTFADALLSKRYRKAQNDFLNQVERLIDWRPIRTLINKKYTKRQNAIGAPAYDVILLFKMLLLETWYNLSDCALEERINDSITFSRFLGLKMEEVSPDHSTISRFRSALTELGLMDKLLAQFNKQLSRHHISVREGVLVDASLVETPHKPNGTITIEVADDREDNRSEAEKEAEEDYQKQVVRRRKGTDEEARWVYKQKRYHYGYKKHCLTNVQGIVQKVITTAANRSDTKEFIPLLQGANIPQGTAVLADKGYACGENRSYLQTHHLQDGIMHKAQRNRALTEEEKQGNKAISPIRSTIERTFGSIRRWFHGGRCRYRGLAKTHTQNILESIAFNLYRTPGIIMSSSLG","607163 606081","Member of the IS5 family of elements. A full-length ISPg1 element.TIGR ID: PG0549","ISPg1 transposase (IS1106-related transposase)","Cytoplasm","PG0499 is equivalent to the previously sequenced AB015879 in GenBANK. See also AJ130872. Residues 31-350 are 34% similar to the IS1106 transposase of N.meningitidis (AE002488).","
InterPro
IPR002559
Domain
Transposase, IS4-like
PF01609\"[147-348]TTransposase_11


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 157-302 are 97% similar to a (TRANSPOSASE PLASMID PROTEIN ELEMENT) protein domain (PD004652) which is seen in Q9ZAD0_PORGI.Residues 12-109 are 98% similar to a (TRANSPOSASE PROTEIN INSERTION ELEMENT) protein domain (PD007264) which is seen in Q9ZAD0_PORGI.Residues 303-361 are 96% similar to a (TRANSPOSASE ORF7 INSERTION SEQUENCE IS1126-LIKE GENE) protein domain (PD187845) which is seen in Q9ZAD0_PORGI.Residues 110-156 are identical to a (TRANSPOSASE ORF7 INSERTION SEQUENCE IS1126-LIKE GENE) protein domain (PD187846) which is seen in Q9ZA61_PORGI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Fri Feb 16 11:28:24 MST 2001","Mon Feb 12 15:58:23 MST 2001","Tue Jan 2 16:00:24 MST 2001","Tue Jan 2 16:00:24 MST 2001","","Mon Feb 12 15:58:23 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG0499 is virtually identical to PG1267, PG0169, PG1050, PG1062, PG0740, PG0918, PG1422, PG0420, PG1662, and PG1099.Partial similarities exist to PG0732, PG0842, PG1607, PG0731, PG0884, PG1184, PG1087, PG0763, PG1755, PG0686, PG0756, PG1798, PG1230, PG1919, PG0044, PG0689, PG1215, PG1665, PG0839, PG1895, PG0883, PG11231, PG0730, PG1159 and PG1608. ","Fri Feb 16 11:28:24 MST 2001","Mon Feb 12 15:58:23 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 147 to 348 (E-value = 9.4e-36) place PG0499 in the Transposase_11 family which is described as Transposase DDE domain (PF01609)","","34540363","","Hanley,S.A., Aduse-Opoku,J. and Curtis,M.A.A 55-kilodalton immunodominant antigen of Porphyromonas gingivalisW50 has arisen via horizontal gene transferInfect. Immun. 67 (3), 1157-1171 (1999)Maley,J. and Roberts,I.S.Characterisation of IS1126 from Porphyromonas gingivalis W83: a new member of the IS4 family of insertion sequence elementsMicrobiol. Lett. 123 (1-2), 219-224 (1994)Shibata,Y., Hayakawa,M., Takiguchi,H., Shiroza,T. and Abiko,Y.Determination and characterization of the hemagglutinin-associatedshort motifs found in Porphyromonas gingivalis multiple geneproducts. J. Biol. Chem. 274 (8), 5012-5020 (1999)","Knight,A.I., Ni,H., Cartwright,K.A. and McFadden,J.J.Identification and characterization of a novel insertion sequence, IS1106, downstream of the porA gene in B15 Neisseria meningitidis.Mol. Microbiol. 6 (11), 1565-1573 (1992)","Mon Feb 12 15:58:23 MST 2001","Mon Feb 12 15:58:23 MST 2001","1","","","PG0549" "PG0500","607805","607551","255","GTGCAGGAAGCAAGAATCAGCCGACAATCGCGTCCTGCATCGTGCAGGAAGCAAGAATCAGTTGACAATCGCGTCCTGCATCGTGCAGGAAGCAAGAATCAGCTGACAATCGCGTCCTGCATCGTGCAGGAAGCAAGAATCAGCCGACAATCGCGTCCTGCATCGTGCAGGAAGCAAGAATCAGCCGACAATCGCGTCCTGCATCGTGCAGGAAGCAAGAAACAGCCGACAATCGTTTCTTATTTCTCGCCTATT","11.70","11.32","9543","VQEARISRQSRPASCRKQESVDNRVLHRAGSKNQLTIASCIVQEARISRQSRPASCRKQESADNRVLHRAGSKKQPTIVSYFSPI","607805 607551","TIGR ID: PG0550","hypothetical protein","Periplasm, Cytoplasm","No significant hits using gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Dec 5 17:37:24 2000","Tue Dec 5 17:37:24 2000","Tue Dec 5 17:06:54 2000","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 20 14:09:25 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Feb 20 14:09:25 MST 2001","","","","","","","1","","","PG0550" "PG0501","611280","608461","2820","ATGAACAAATTTTACAAATCACTTTTGCAGTCAGGACTGGCTGCCTTCGTGTCGATGGCAACTGCACTGACCGCTTCTGCACAGATTTCGTTCGGAGGGGAACCCTTGAGTTTCTCTTCAAGATCCGCCGGAACGCATTCATTCGACGATGCAATGACTATCCGCCTTACTCCGGATTTCAATCCGGAAGACCTGATCGCACAGAGCCGTTGGCAATCGCAAAGAGATGGCCGGCCCGTCCGGATAGGACAAGTAATACCGGTGGATGTGGACTTTGCATCCAAGGCTTCGCACATCTCTTCCATCGGAGACGTAGATGTATATCGCCTGCAATTCAAGTTGGAAGGAGCCAAAGCCATTACGCTTTATTACGATGCATTCAATATTCCGGAGGGCGGACGCCTCTATATCTATACCCCCGACCATGAAATTGTGTTGGGAGCATATACGAACGCCACTCATCGCCGCAACGGAGCTTTTGCCACAGAGCCGGTACCGGGGAGTGAGCTTATTATGGATTATGAAGTGTCTCGCGGAGGGACTTTGCCTGACATCAAGATCTCCGGTGCGGGTTATATATTCGACAAAGTCGGCGGACGCCCCGTAACGGATAACCATTACGGGATCGGTGAGGACGATTCCGATTCGGATTGCGAGATCAACATCAATTGTCCTGAAGGTGCAGACTGGCAGGCAGAGAAGAACGGTGTGGTGCAAATGATCATGGTAAAAGGACAGTATATCTCAATGTGCTCAGGCAACCTGCTCAATAATACGAAAGGAGACTTTACTCCGCTGATCATTTCTGCCGGACACTGTGCTTCCATAACAACCAATTTCGGTGTAACGCAATCCGAGTTGGATAAGTGGATCTTCACTTTCCACTATGAAAAAAGAGGATGCAGCAATGGTACATTGGCCATCTTCCGTGGCAACAGTATCATCGGAGCTTCCATGAAGGCTTTCCTCCCGATCAAAGGTAAATCCGATGGTCTCTTGCTGCAACTCAACGATGAAGTCCCTCTGCGCTATCGTGTCTATTACAATGGATGGGACAGTACGCCCGATATTCCCTCGAGCGGTGCCGGTATTCATCATCCGGCCGGAGATGCCATGAAGATTTCCATCCTAAAGAAGACTCCGGCTCTGAATACATGGATCTCCTCCAGTGGTTCCGGAGGGACTGACGATCACTTCTATTTCAAATACGATCAAGGTGGTACGGAAGGAGGATCGTCCGGTTCTTCTCTCTTCAATCAGAATAAGCACGTGGTCGGCACACTGACCGGAGGTGCCGGCAATTGTGGCGGGACGGAGTTCTACGGCAGACTGAACAGTCATTGGAACGAGTATGCATCCGATGGCAATACGAGCCGCATGGACATCTATCTGGATCCCCAAAACAATGGCCAGACGACCATCCTCAACGGAACGTATCGTGACGGTTATAAGCCTTTGCCCTCTGTGCCCCGGCTATTGTTGCAGTCTACAGGCGATCAGGTCGAATTGAATTGGACGGCTGTTCCTGCCGATCAATATCCATCATCTTATCAGGTCGAATACCACATATTCCGAAATGGAAAGGAAATAGCTACGACAAAGGAGTTGTCCTATTCGGATGCCATCGACGAAAGTATTATCGGTAGCGGTATCATTCGATACGAAGTAAGCGCACGCTTCATTTATCCCTCGCCGTTGGATGGAGTGGAATCTTATAAGGATACGGACAAGACTTCTGCCGACCTTGCCATAGGAGACATTCAGACCAAGCTGAAGCCGGACGTAACACCTCTCCCCGGAGGAGGAGTATCATTAAGCTGGAAAGTTCCTTTCTTAAGCCAGTTGGTTTCCCGATTCGGAGAAAGCCCCAATCCTGTGTTCAAAACCTTTGAAGTGCCCTATGTTTCTGCCGCAGCCGCACAAACCCCCAATCCTCCCGTTGGCGTAGTCATTGCAGACAAGTTTATGGCCGGTACATATCCCGAAAAGGCTGCTATCGCTGCCGTTTATGTAATGCCATCCGCTCCGGACTCTACTTTCCACCTCTTCCTCAAGAGCAACACAAACAGAAGATTGCAGAAGGTGACAACTCCCTCCGATTGGCAGGCCGGAACATGGTTGAGGATCAATTTGGATAAGCCGTTCCCGGTGAATAATGACCATATGCTTTTTGCCGGTATCAGAATGCCTAATAAGTACAAGCTCAATCGTGCTATCCGTTATGTAAGAAATCCGGATAACCTTTTCTCCATTACCGGTAAGAAGATTTCATATAACAACGGAGTCTCTTTCGAAGGCTACGGAATACCCTCGCTCTTGGGCTATATGGCTATCAAATATCTGGTGGTAAATACCGATGCTCCGAAGATCGATATGTCGCTTGTACAGGAGCCTTATGCTAAGGGAACGAATGTGGCTCCATTCCCCGAATTGGTCGGCATATATGTCTATAAGAACGGAACATTTATCGGCACACAGGATCCATCCGTCACAACTTATTCGGTTTCAGACGGAACAGAGAGCGATGAATACGAAATAAAACTGGTATATAAGGGATCGGGCATTTCGAATGGCGTTGCTCAGATTGAGAATAACAATGCTGTCGTTGCATATCCGTCTGTTGTAACAGATCGTTTCAGCATTAAGAACGCTCATATGGTTCACGCTGCCGCCCTCTACTCATTGGATGGCAAGCAGGTTCGTTCTTGGAACAACCTCCGCAATGGCGTGACATTCAGTGTTCAAGGACTTACGGCCGGTACTTATATGCTCGTTATGCAGACGGCAAACGGCCCTGTGAGCCAAAAGATCGTGAAGCAG","6.40","-6.13","102500","MNKFYKSLLQSGLAAFVSMATALTASAQISFGGEPLSFSSRSAGTHSFDDAMTIRLTPDFNPEDLIAQSRWQSQRDGRPVRIGQVIPVDVDFASKASHISSIGDVDVYRLQFKLEGAKAITLYYDAFNIPEGGRLYIYTPDHEIVLGAYTNATHRRNGAFATEPVPGSELIMDYEVSRGGTLPDIKISGAGYIFDKVGGRPVTDNHYGIGEDDSDSDCEININCPEGADWQAEKNGVVQMIMVKGQYISMCSGNLLNNTKGDFTPLIISAGHCASITTNFGVTQSELDKWIFTFHYEKRGCSNGTLAIFRGNSIIGASMKAFLPIKGKSDGLLLQLNDEVPLRYRVYYNGWDSTPDIPSSGAGIHHPAGDAMKISILKKTPALNTWISSSGSGGTDDHFYFKYDQGGTEGGSSGSSLFNQNKHVVGTLTGGAGNCGGTEFYGRLNSHWNEYASDGNTSRMDIYLDPQNNGQTTILNGTYRDGYKPLPSVPRLLLQSTGDQVELNWTAVPADQYPSSYQVEYHIFRNGKEIATTKELSYSDAIDESIIGSGIIRYEVSARFIYPSPLDGVESYKDTDKTSADLAIGDIQTKLKPDVTPLPGGGVSLSWKVPFLSQLVSRFGESPNPVFKTFEVPYVSAAAAQTPNPPVGVVIADKFMAGTYPEKAAIAAVYVMPSAPDSTFHLFLKSNTNRRLQKVTTPSDWQAGTWLRINLDKPFPVNNDHMLFAGIRMPNKYKLNRAIRYVRNPDNLFSITGKKISYNNGVSFEGYGIPSLLGYMAIKYLVVNTDAPKIDMSLVQEPYAKGTNVAPFPELVGIYVYKNGTFIGTQDPSVTTYSVSDGTESDEYEIKLVYKGSGISNGVAQIENNNAVVAYPSVVTDRFSIKNAHMVHAAALYSLDGKQVRSWNNLRNGVTFSVQGLTAGTYMLVMQTANGPVSQKIVKQ","611328 608461","TIGR ID: PG0553","lysyl endopeptidase precursor (protease I precursor) (API)","Extracellular, Outer membrane","Few significant hits in gapped BLAST to lysyl endopeptidase protein; i.e. residues 1-4706 are 25% similar to [gi|77548] lysyl endopeptidase precursor of Achromobacter lyticus (strain M497-1), residues 208-449 are 31% similar to (AF083621) endoproteinase Arg-C precursor of Lysobacter enzymogenes and residues 218-486 are 26% similar to [gi|7463016] lysyl endopeptidase of Lysobacter enzymogenes.","
InterPro
IPR000194
Domain
ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding
PS00152\"[381-390]?ATPASE_ALPHA_BETA
InterPro
IPR001254
Domain
Peptidase S1 and S6, chymotrypsin/Hap
PS00134\"[268-273]?TRYPSIN_HIS
InterPro
IPR009003
Domain
Peptidase, trypsin-like serine and cysteine
SSF50494\"[213-479]TPept_Ser_Cys
noIPR
unintegrated
unintegrated
G3DSA:2.40.10.10\"[327-445]TG3DSA:2.40.10.10


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 74-392 are 23% similar to a (PRECURSOR SIGNAL PROTEASE I) protein domain (PD141337) which is seen in API_ACHLY.","","Thu Jun 14 11:15:26 MDT 2001","","Thu Jun 14 11:15:26 MDT 2001","Thu Jun 14 11:15:26 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:15:26 MDT 2001","Thu Jun 14 11:15:26 MDT 2001","","Wed Jun 20 10:41:54 MDT 2001","Tue Mar 13 16:43:17 MST 2001","Wed Jun 20 10:41:54 MDT 2001","Tue Jan 2 10:34:36 2001","","Wed Jun 20 10:36:28 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 13 16:43:17 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Jun 20 10:36:28 MDT 2001","34540364","","","Ohara,T., Makino,K., Shinagawa,H., Nakata,A., Norioka,S. andSakiyama,F. 1989. Cloning, nucleotide sequence, and expression of Achromobacter protease I gene. J. Biol. Chem. 264 (34): 20625-20631. PubMed: 2684982.","","Tue Mar 13 16:43:17 MST 2001","1","","","PG0553" "PG0502","612325","611810","516","ATGATTGGATATGTATCCAAGCAATCTAAAGTTGCCAATAAAGATGGCAAAAGAGTGTGGTATCCTCAGACTGTGGCTTCCGGTCGCGTCATCGATACCAAAAGAGTAGCACGCGAACTTGCTGCACGTTCGGGTGCATCCGAGGGGGATGTACATGGCATCCTGCATGACTTGGGACTCGTGCTGCGGGACTATCTCTCCACAGGGGCGCGCGTGGTGTTGGACGGAGTAGGTTCCTTCCGGATCACAGCCAACGCACGTGGCAAAGGCGTGGAGAAGAAAGAGGATGTATCGCCTCGTCAGTTCAACAGCATCCGTGTGGCTTTCTATCCGGAGAAGCGGGTGAATCAGTCCACTCACACGACCAACGTGACGCTGATCGACCCCAATCTGCGGTTCGTCTACGTGAAGAATCCGAAAGATGCGGCAGGCAACGCCTCTTCACAGACGAATACGCCCGACAGCCCTACACCGCCGAACGGTGGTGGCGAACAGGGGTCGCAGGGTGGCGGATTG","10.70","8.71","18405","MIGYVSKQSKVANKDGKRVWYPQTVASGRVIDTKRVARELAARSGASEGDVHGILHDLGLVLRDYLSTGARVVLDGVGSFRITANARGKGVEKKEDVSPRQFNSIRVAFYPEKRVNQSTHTTNVTLIDPNLRFVYVKNPKDAAGNASSQTNTPDSPTPPNGGGEQGSQGGGL","612325 611810","TIGR ID: PG0555","conserved hypothetical protein","Extracellular","One significant hit in gapped BLAST to conserved hypothetical protein, e.g.; residues 4-157 are 30% similar to (AF285774) unknown of Bacteroides fragilis.","
InterPro
IPR005902
Family
Putative DNA-binding protein, HU-related
TIGR01201\"[1-172]THU_rel
InterPro
IPR010992
Family
IHF-like DNA-binding
SSF47729\"[30-125]TIHF_like_DNA_bnd


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Jan 2 10:41:49 2001","Tue Jan 2 10:41:49 2001","Tue Jan 2 10:41:49 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","All of PG0502 shows 47% similarity to both PG1124 and PG0511, conserved hypothetical proteins. Residues 4-170 are 29% similar to PG0306, residues 6-172 are 28% similar to PG0200 and residues 5-172 are 28% similar to PG1781.","Mon Apr 2 16:45:08 MDT 2001","Mon Apr 2 16:45:08 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Apr 2 16:45:08 MDT 2001","34540366","","","","","","1","","","PG0555" "PG0503","613419","614318","900","TTGATGAAATTGTCTTCAGGTGGAGTAAGTTCTGCCGTGGTAAATAATGGTACTATAGTCCAGCAAGCTGGATTTTTGCCTGCGGGAACGACTTTTTTTACGCCAATGGTCCTTTTTCAAATAACATCATTTGTAACAGGGCAATATTATATGAATGGTATGACTAAGCAGTTAAATGCAGCTCTTGAAAAGTTAGATACGCTAATCGAATTTTATTATAGAGAAAGAATGGCGAAGATAAAACAATCAGTTTCATTGATAAATAAAAATTTATCTAATAAGATCTTTTCTGACGAAGATTTGCAACAAATGAAAGATGTTCATTCTGATTTGTCTATAATAAAAAACGAGTTTTTTGAAGACCTGAGTTGTATGACAAGGGAAATGTCGAAAAAAAATAAACGCAATCCTTGGGGGAGATTGAAAGCTGCTAAGAGTATTGAAAAAGAGAAAGCAAAATTCATTCATAAAATGGAAATTTTATTGTTTGTTGAAGCCTTATTATATTTGACTAAAGTTACAGAACTATATATGAATATTCGTTACATACAGCCAGATATGAATAGACTCAACTGGACGCTTTCTGCACTTATTGAATTATCCACTTTTAGAGAGGATGATTTGTTTTCTATGGAATTAATCAATTTGCATGAAACTGTCAAGAAAGAAATCTTGGAATACTTGAGTGATTTAGAAAAAGGACCAATCTTTACTTCTAAAATTCGAGAGATAAAATCAAATTTTGAAAATTCTTTTGTCGATATTGAGGAGCATAAGGATAATTTGTTATCAGAAGCAAAGGAAATACATAAAAGCACCTTGGTTCGATTTGAGAAAGATAAAATGTTTGTGATTGACTTTAGAAATGGAAATCTCGAACTTTATTCATCAAATGACCAA","6.70","-0.82","34889","LMKLSSGGVSSAVVNNGTIVQQAGFLPAGTTFFTPMVLFQITSFVTGQYYMNGMTKQLNAALEKLDTLIEFYYRERMAKIKQSVSLINKNLSNKIFSDEDLQQMKDVHSDLSIIKNEFFEDLSCMTREMSKKNKRNPWGRLKAAKSIEKEKAKFIHKMEILLFVEALLYLTKVTELYMNIRYIQPDMNRLNWTLSALIELSTFREDDLFSMELINLHETVKKEILEYLSDLEKGPIFTSKIREIKSNFENSFVDIEEHKDNLLSEAKEIHKSTLVRFEKDKMFVIDFRNGNLELYSSNDQ","613419 614318","TIGR ID: PG0556","hypothetical protein","Cytoplasm","No significant hits in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Jan 2 10:49:30 2001","Tue Jan 2 10:49:30 2001","Tue Jan 2 10:49:30 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540367","","","","","","1","","","PG0556" "PG0504","614376","615065","690","TTGAAACTACAGAGAAAAATGAATGAAGTACCTGTGATTAGAAAAGGACGCTTGAAGTCTTATTGGAATACAGCTTTTAGAGGAGGCTTTTTTCTCGGATTATTCGTGTTCCTGGCTGCATTGACAAAGCAGAGCTTGTTGAACTCCTTGCTCTTCGGCCTGATGATTTGGGCCTTTGTCATTGTACTATGGCTCGGTGTAGGATTTACTTCCGAAGAATACTACAAGCGCAAGAAGCAAATAAAGAAGTTGATGTCAGATCAGTATGCTTTTCTGGATCTGCATGGCTTTACGTTGCATGAAGATCTCTATTTCGAGGGTATATATGAAGGCTTCTTCTTTAGAGTTTGCCCTGCGACCGAGTATATCAAGAAAGGATATGCAGGCAAAAAAGCTATTGAGTATGTAATAATCGAATCCTTTTACAGATTCGCTTCAGAAGCGACTGATATGGATCGTGAGGTGAAAATGTCCGGAGAATATAATTTTGGCGATGTTCATTTCGAAAATCATTGTGCCGGATTTGTGCCTAAAGACTGGAAGAATCCGGATTTCAAAGCAAACTTCGATGCTCTGATAACCATATTCGAGCGTGAAGGCCTTCTCCCTATAACGAAAAACGACTGGGAGAGTACTTTCGGACAGCATTCGAAGAAAGCTAAAGACGCAAGCAGGAAGAATCCTCAAAGA","10.00","8.11","26880","LKLQRKMNEVPVIRKGRLKSYWNTAFRGGFFLGLFVFLAALTKQSLLNSLLFGLMIWAFVIVLWLGVGFTSEEYYKRKKQIKKLMSDQYAFLDLHGFTLHEDLYFEGIYEGFFFRVCPATEYIKKGYAGKKAIEYVIIESFYRFASEATDMDREVKMSGEYNFGDVHFENHCAGFVPKDWKNPDFKANFDALITIFEREGLLPITKNDWESTFGQHSKKAKDASRKNPQR","614376 615065","TIGR ID: PG0557","hypothetical protein","Cytoplasm, Inner membrane","This sequence corresponds to gi:34396681 in Genbank.","
noIPR
unintegrated
unintegrated
signalp\"[1-70]?signal-peptide
tmhmm\"[21-41]?\"[47-67]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Jan 2 10:50:54 2001","Thu Mar 3 11:16:21 2005","Tue Jan 2 10:50:54 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 3 11:16:21 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540368","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Thu Mar 3 11:16:21 2005","","1","","","PG0557" "PG0505","616422","615604","819","ATGAAACTCCAAGAACAGCATTACCACGAGGCAGCATCTTTCCTGTCCTCTCGTCTACCGGGCGATGCCAAAACGGCTATAATACTGGGTAGCGGCTTAGGCGAACTGGCCGAAAAAATCGAAAACAAGACCGTCATCCCCTACAATGAGATACCTCATTTCGCCCAAGCTACGGCTGTAGGGCACAAGGGTAATATCATCGGAGGAATCTTAGGCGGCACTCCTGTCGTTGCCATGCAGGGGCGCTTTCATTATTACGAAGGATATTCGATGGATCAGGTGACGTTCCCCATCAGGGTTATGAAGTTGCTGGGCATAGAAAATCTTTTCGTATCGAATGCTGCCGGCGGCATCAACACCTCTTTCAAGGTGGGAGACCTGATGATCATTTGCGATCACATCAACAACTTACCCAATCCATTGATCGGGCCTAATATGGATATGTTCGGCGTTCGATTCCCCGATATGACACGAGCTTATGACCGAGAGTTCATCGCTAAAGCCAAAGGCATAGCTCAAGAACTGAATATCCCGGTCAAAGAGGGTGTGTATGTAGGTCTTACAGGCCCCTCCTACGAAACGCCTGCCGAATACAAATTCTGGGGACAAGTGGGTGGCGATGCCATCGGTATGAGTACGGTACCGGAAGTAATCGTAGCTCGACATACGGGTATTCGTGTTTTCGGAATGTCCGTAATCACGAATGAAGGCTACCACTTTGCCGATGACTTCGTCAATGACGAGCAGGATGTTATCCGTGCAGCCAATGCCGCATCCGAAAAGATGGGCGCGATCTTTGCTCGACTGATCGCTGCCGTT","5.90","-5.12","29611","MKLQEQHYHEAASFLSSRLPGDAKTAIILGSGLGELAEKIENKTVIPYNEIPHFAQATAVGHKGNIIGGILGGTPVVAMQGRFHYYEGYSMDQVTFPIRVMKLLGIENLFVSNAAGGINTSFKVGDLMIICDHINNLPNPLIGPNMDMFGVRFPDMTRAYDREFIAKAKGIAQELNIPVKEGVYVGLTGPSYETPAEYKFWGQVGGDAIGMSTVPEVIVARHTGIRVFGMSVITNEGYHFADDFVNDEQDVIRAANAASEKMGAIFARLIAAV","616422 615604","TIGR ID: PG0558","purine nucleoside phosphorylase","Cytoplasm","Numerous significant hits in gapped BLAST to purine nucleoside phosphorylase protein; e.g. residues 11-273 are 50% similar to [gi:1169270] purine nucleoside phosphorlyase I (pnp I, pu-npase I, inosine phosphorylase) of Bacillus subtilis, residues 10-273 are 49% similar to (D87959) purine nucleoside phosphorylase of Bacillus stearothermophilus, residues 10-235 are 52% similar to (AP001512) purine nucleoside phosphorylase of Bacillus halodurans.","
InterPro
IPR001369
Family
Purine phosphorylase, family 2
PTHR11904\"[8-271]TMtap_PNP
PF00896\"[22-273]TMtap_PNP
PS01240\"[77-118]?PNP_MTAP_2
InterPro
IPR011268
Family
Inosine guanosine and xanthosine phosphorylase
PIRSF000477\"[7-273]TPurNPase
TIGR01697\"[24-271]TPNPH-PUNA-XAPA
InterPro
IPR011270
Family
Purine nucleoside phosphorylase I, inosine and guanosine-specific
TIGR01700\"[24-271]TPNPH
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.1580\"[6-273]TG3DSA:3.40.50.1580
PTHR11904:SF9\"[8-271]TPTHR11904:SF9
SSF53167\"[3-273]TSSF53167


","BeTs to 11 clades of COG0005COG name: Purine nucleoside phosphorylaseFunctional Class: FThe phylogenetic pattern of COG0005 is amtKYqVcebR----------Number of proteins in this genome belonging to this COG is 1","***** IPB001369 (Purine and other phosphorylases family 2) with a combined E-value of 1.4e-48. IPB001369A 23-34 IPB001369B 75-84 IPB001369C 105-135 IPB001369D 181-224","Residues 11-163 are 53% similar to a (PHOSPHORYLASE TRANSFERASE GLYCOSYLTRANSFERASE PURINE) protein domain (PD006911) which is seen in DEOD_BACSU.Residues 168-273 are 47% similar to a (PHOSPHORYLASE TRANSFERASE GLYCOSYLTRANSFERASE PROTEIN) protein domain (PD003195) which is seen in DEOD_BACSU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Jan 2 11:16:51 2001","Tue Jan 2 11:16:51 2001","Tue Jan 2 11:16:51 2001","Thu Feb 22 18:46:42 MST 2001","Thu Feb 22 18:46:42 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 22 18:46:42 MST 2001","-61% similar to PDB:1B8N PURINE NUCLEOSIDE PHOSPHORYLASE (E_value = 1.4E_57);-61% similar to PDB:1B8O PURINE NUCLEOSIDE PHOSPHORYLASE (E_value = 1.4E_57);-61% similar to PDB:1LV8 Crystal structure of calf spleen purine nucleoside phosphorylase in a new space group with full trimer in the asymmetric unit (E_value = 1.4E_57);-61% similar to PDB:1LVU Crystal structure of calf spleen purine nucleoside phosphorylase in a new space group with full trimer in the asymmetric unit (E_value = 1.4E_57);-61% similar to PDB:1V48 Calf spleen purine nucleoside phosphorylase (PNP) binary complex with 9-(5,5-difluoro-5-phosphonopenthyl)guanine (E_value = 1.4E_57);","","","Residues 22 to 273 (E-value = 5.4e-91) place PG0505 in the Mtap_PNP family which is described as Phosphorylase family 2 (PF00896)","Fri Apr 20 10:07:17 MDT 2001","34540369","","","","","","1","","","PG0558" "PG0506","617587","616445","1143","ATGGCCGTTATACCCGGGTTGCAAAACTGTCACACTCATTCGGCCATGACTATCTTCCGAGGCTACGGCGATGATCTGAGACTGATGGATTGGCTTGAGAACTGGATATGGCCGGTGGAAGCACAGATGACAGAGGAAGATGTCTACTGGGGTTCTAAATTGGCCTGTCTGGAGATGATCAAGAGCGGTACGACTGCTTTCCTCGACATGTACGCTCATACCCTTGCCACAGCACGAGCAGTAGAAGAGATGGGCTTGCGTGCCGTACTATCATCCACGCTCTTCGACAGAGGAGATCAGGAGCGGGCTCGCATCGACAGAGAACGCTGCTACAGTCTGCACGAAGCATTCTGCTCCTATAGCGACAGGATCCAATTTTCGGTAGGACCTCATGCCATTTATACCGTAAGCGGAGAGCAATTGCAATTCTGTCATCGCTTCGCGAATGAGAAAAATGTGCTGATACACTTGCACCTATCGGAGACAGAAGGAGAAGTCCGGGACTGCATCGCTAAGTTCGGTACCACTCCTGTCAGGTATCTGCACAAACTGGGCATACTATCGCCCCAACTAATCTTGGCTCATAGCATCTGGCTGGATGATGAGGAAATGGACTTGCTGGCAGCTCATGGCTGTAAGGTGGTACACAATCCGGCGTCGAATATGAAATTAGCCTCCGGCTACCGCTTCCACTATGACGAGATGCGCAAGCGCGGAATAGTCATAGGTCTTGGTACCGATGGATGCTCCTCTTCCAACAATTTGGATATGATCATCGCCATGAAGCTGGCCGCCTTTCTCGGCAAAGCTTGGCGTTCGGATGCTACAGCAGTGAAAGCAACCGACATATACGAAAGTGCGACAGTAGATGGAGCTCGAATCATGGGTACGGATACCGGTGTCATAGCTCCGGGACGCTTGGCAGATCTGTGTCTGATACGTCTGGACATCCCGGAAATGACTCCCTGTCACAACTTCATATCCAACTTGGTTTATTCTGCCAATAGCAGTGCAGTGGATACGACTATTGTAGATGGGAAGATCCTGATGCGCGGACGTAAAGTACCCGGAGAGGAAGCCATATTGGCCGGCGCAGCTGAAGCTGCATACAAACTGATGGCAAAGGCCCACAAAACACACGAA","6.30","-6.60","42264","MAVIPGLQNCHTHSAMTIFRGYGDDLRLMDWLENWIWPVEAQMTEEDVYWGSKLACLEMIKSGTTAFLDMYAHTLATARAVEEMGLRAVLSSTLFDRGDQERARIDRERCYSLHEAFCSYSDRIQFSVGPHAIYTVSGEQLQFCHRFANEKNVLIHLHLSETEGEVRDCIAKFGTTPVRYLHKLGILSPQLILAHSIWLDDEEMDLLAAHGCKVVHNPASNMKLASGYRFHYDEMRKRGIVIGLGTDGCSSSNNLDMIIAMKLAAFLGKAWRSDATAVKATDIYESATVDGARIMGTDTGVIAPGRLADLCLIRLDIPEMTPCHNFISNLVYSANSSAVDTTIVDGKILMRGRKVPGEEAILAGAAEAAYKLMAKAHKTHE","617716 616445","TIGR ID: PG0559","N-ethylammeline chlorohydrolase","Cytoplasm","Numerous significant hits in gapped BLAST to N-ethylammeline chlorohydrolase protein; e.g. residues 14-394 are 45% similar to (AE000910) N-ethylammeline chlorohydrolase homolog of Methanothermobacter thermoautotrophicus, residues 3-395 are 43% similar to (AE001066) N-ethylammeline chlorohydrolase (trzA-1) of Archaeoglobus fulgidus, residues 14-393 are 42% similar to (AJ248285) chlorohydrolase, putative of Pyrococcus abyssi.","
InterPro
IPR006680
Domain
Amidohydrolase 1
PF01979\"[2-314]TAmidohydro_1
InterPro
IPR011059
Domain
Metal-dependent hydrolase, composite
SSF51338\"[279-374]TMetalo_hydrolase
noIPR
unintegrated
unintegrated
G3DSA:3.20.20.140\"[6-300]TG3DSA:3.20.20.140
PTHR11271\"[3-376]TPTHR11271
PTHR11271:SF7\"[3-376]TPTHR11271:SF7
SSF51556\"[6-300]TSSF51556


","BeTs to 8 clades of COG0402COG name: Cytosine deaminase and related metal-dependent hydrolasesFunctional Class: F,RThe phylogenetic pattern of COG0402 is AMTkyqvcE---uj-------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 59-346 are 46% similar to a (HYDROLASE PROTEIN CHLOROHYDROLASE) protein domain (PD003539) which is seen in YF05_METTH.Residues 18-58 are 60% similar to a (HYDROLASE PROTEIN CHLOROHYDROLASE 391AA) protein domain (PD186821) which is seen in YF41_METJA.","","Thu Jun 14 11:16:09 MDT 2001","","Thu Jun 14 11:16:09 MDT 2001","Thu Jun 14 11:16:09 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:16:09 MDT 2001","Thu Jun 14 11:16:09 MDT 2001","","","Tue Jan 2 11:23:45 2001","Tue Jan 2 11:23:45 2001","Tue Jan 2 11:23:45 2001","","Thu Feb 22 18:47:15 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 22 18:47:15 MST 2001","-53% similar to PDB:1J6P Crystal structure of Metal-dependent hydrolase of cytosinedemaniase/chlorohydrolase family (TM0936) from Thermotoga maritima at 1.9 A resolution (E_value = 7.2E_48);-53% similar to PDB:1P1M Structure of the hypothetical protein TM0936 from Thermotoga maritima at 1.5A bound to Ni and methionine (E_value = 7.2E_48);-41% similar to PDB:2I9U Crystal Structure of Guanine Deaminase from C. acetobutylicum with bound guanine in the active site (E_value = 5.9E_10);","","","Residues 2 to 314 (E-value = 1e-68) place PG0506 in the Amidohydro_1 family which is described as Amidohydrolase family (PF01979)","Fri Apr 20 10:08:19 MDT 2001","34540370","","","","","","1","","","PG0559" "PG0507","619146","617794","1353","ATGAATATCAGAGACTATATCCGCGAAAACGAGGCACGCTTTCTGGAAGATCTTTTTGCCCTGATTCGCATCCCCTCGGTGAGTGCAAAAAGCGAACATAAACCCGATATGCAGCGTTGTGCCGAACACTGGCGCGACCATCTCCTACAGGTAGGGGCACAGAAAGCAGAAGTATTCCAGACACCGGGCAATCCGGTCGTCTATGCGGAACGAATAATGGATCCGAAAGCCAAAACCATACTTGTCTATGCTCATTACGACGTGATGCCTCCCGAGCCTTTGGAGCTATGGAAGAGCGAACCGTTCGAGCCGGTAATCCGCGACGGCCATATCTGGGCGCGTGGAGCTGACGACGACAAAGGGCAGGGCATGATCCAGGTGAAAGGATTCGAAACGGCTTTGGCTCTGGGTTTGGTACAGTGCAATGTGAAGTTCCTCTTCGAAGGTGAGGAAGAGATAGGCTCTACCAATTTGGAAGCATTCTGCCGCGCACACAAGGAGATGCTATCGGCAGATGTGATCATCGTATCCGATACGAGCATGGTAAGCGCAGAAACCCCGTCGCTAACGACCGGTCTGCGCGGACTGGCATATTGGGAAATGGAGGTGACCGGCCCGAACAGGGATTTGCACTCCGGACACTTCGGAGGTGCCGTGGCCAATCCGATAAACGAGCTATGCAAACTTATTGCCGGCATCGTGGACGAGAACGGTCGCATCACGATCCCCCATTTCTACGATGATGTAGTACCGCTATCGGATGAAGAGCGTCAAATGATCGCACAGGTACCTTTCTCCGAAGAAAAATACTGTCAGGCTCTTGACATAGACACCGTATTCGGGGAAGCCGGATACAGCACACTCGAGCGGAACAGCTGTCGCCCGTCATTCGACGTTTGCGGTATCTGGGGTGGCTATACGGGAGAAGGTGCTAAAACGGTATTGCCTTCGAAGGCTTACGCCAAAGTATCGTCACGATTGGTGGCCAATCAGGATCACGAGAAAATATCCCAAATGTTCATCGACTACATCCGGTCGGTGGCACCTAAGCATATCAAAGTGAAGGTGACTCCTCTGCATGGAGGGGAAGCATACCTCTGCCCTATCGATTTGCCGGCCTATAAAGCAGCCGAAGAGGCGTGTACCATCGCTTTCGGCAAACGACCGCTTGCCGTTCGTCGGGGTGGTAGCATTCCTATCATTGCTACGTTCGAGAAAGTATTGGGACTGAAAACCGTGCTGATGGGATTCGGATTGGAAAGCAATGCCATTCACTCGCCGAACGAGAATATGCCGCTGGACATCTTCCGTAAGGGAATCGAATCGGTAGCCGAGTTCTACCGCATATACAAG","5.40","-12.25","50184","MNIRDYIRENEARFLEDLFALIRIPSVSAKSEHKPDMQRCAEHWRDHLLQVGAQKAEVFQTPGNPVVYAERIMDPKAKTILVYAHYDVMPPEPLELWKSEPFEPVIRDGHIWARGADDDKGQGMIQVKGFETALALGLVQCNVKFLFEGEEEIGSTNLEAFCRAHKEMLSADVIIVSDTSMVSAETPSLTTGLRGLAYWEMEVTGPNRDLHSGHFGGAVANPINELCKLIAGIVDENGRITIPHFYDDVVPLSDEERQMIAQVPFSEEKYCQALDIDTVFGEAGYSTLERNSCRPSFDVCGIWGGYTGEGAKTVLPSKAYAKVSSRLVANQDHEKISQMFIDYIRSVAPKHIKVKVTPLHGGEAYLCPIDLPAYKAAEEACTIAFGKRPLAVRRGGSIPIIATFEKVLGLKTVLMGFGLESNAIHSPNENMPLDIFRKGIESVAEFYRIYK","619146 617794","TIGR ID: PG0561","conserved hypothetical protein","Cytoplasm, Extracellular","Numerous significant hits in gapped BLAST to protein; e.g. residues 17-440 are 49% similar to (AE002039) ArgE/DapE/Acy1 family protein of Deinococcus radiodurans, residues 2-447 are 41% similar to (AP001520) unknown conserved protein of Bacillus halodurans, residues 3-447 are 41% similar to (AL390968) putative peptidase of Streptomyces coelicolor A3(2).This sequence is similar to BT2085.","
InterPro
IPR002933
Family
Peptidase M20
PF01546\"[81-449]TPeptidase_M20
InterPro
IPR011650
Domain
Peptidase M20, dimerisation
PF07687\"[191-352]TM20_dimer
noIPR
unintegrated
unintegrated
G3DSA:3.40.630.10\"[7-447]TG3DSA:3.40.630.10
PTHR11014\"[9-242]T\"[285-450]TPTHR11014
PTHR11014:SF15\"[9-242]T\"[285-450]TPTHR11014:SF15
SSF53187\"[9-450]TSSF53187
SSF55031\"[195-363]TSSF55031


","BeTs to 12 clades of COG0624COG name: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylasesFunctional Class: EThe phylogenetic pattern of COG0624 is AM-KYqV-EBRHuj-----nxNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 15-152 are 36% similar to a (PROTEIN HYDROLASE DESUCCINYLASE SUCCINYL-DIAMINOPIMELATE) protein domain (PD001449) which is seen in Q9Z6S9_BBBBB.Residues 154-436 are 30% similar to a (PROTEIN INTERGENIC REGION R11H6.1) protein domain (PD024139) which is seen in YFL4_YEAST.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Jan 2 11:28:18 2001","Wed Dec 10 14:33:40 2003","Tue Jan 2 11:28:18 2001","","Wed Dec 10 14:33:40 2003","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Dec 10 14:33:40 2003","-40% similar to PDB:1VGY Crystal structure of succinyl diaminopimelate desuccinylase (E_value = 7.2E_10);","","","Residues 18 to 450 (E-value = 2.9e-54) place PG0507 in the Peptidase_M20 family which is described as Peptidase family M20/M25/M40 (PF01546)","","34540372","","","","","","1","","","PG0561" "PG0508","619363","621036","1674","ATGGACGCAATAGTTCTTTGGCTCCGCGAAGTTTTCCTCGAGCCGTCGGTTACGCAGACGATCATTATCCTCAGTCTCGTATGCGCTTTGGGCTTGCAGTTGGGCAAGCTTCGTATCGGCACTATCTCGCTTGGCATCACTTTCGTCTTTTTTGTCGGGATTTTGGCTTCTCATTTCGGAGTTACGACCGATCCCGTGATGCTCACTTTTGCGCAGAACTTCGGCCTTGTAATCTTTGTCTATGCGCTGGGTTTACAGGTAGGCCCGTCTTTTTTCCCTTCGCTCAAGAAGGGGGGCATTGCCCAGAATCTTATCTCCTTGGGATTAGTCCTACTCACATTTCTCCTGTGCATCCTCCTTTATTATATCCTTGGCATTTCCATGCCCAATCTGATGGGTATCGTGGCCGGTGCCACTACCAATACCCCTGCTTTGGGTGCAGCCCAAACGACCCTCCATCAGATCAATCCCGATGCCACGGCCGAAATGGCCGAAATGGCTCTGGCCTGTGCCGTTACCTATCCTTTGGGCGTTGTGGGTGTTATTATTGCTTTGGCCCTGCTGAAAGTTATGATGCCCAAGGTCGAGGAACGAGACGATTCCGAGGCTCCCAAAGCTTTCTTCTCCGAGTATGAAATCTGCAATCCTGCTTTGGATGGCAAAAGCGTTCGCGAAGTAGCACTCCTGCTCAAGCGCCCTTTCGTCATTACACGGGTCTGGCACAACGGTAAAGTCGAGATCCCTACCTCTGATATGATCCTCTATTTCGGCGATCACATCCTCGCTGTCTCCGGTGAAGAGGATACCTCACAGCTCGAAATACTCTTCGGCAAGAGAGAAATGAAGGATTGGAACCGTCCCGATATAGACTGGAACAGTGTGGACAAACAGCTCGTATCACGCAGGCTGGTAATAACTCGCCCTAAGCTCAACGGCGTACGCCTCGGCATGCTGAAAATCCGCAACCTGTATGGGGTCAATATCAGTCGTGTGGACAGGGCCGGAGTAGAATTGCTGCCGGATAGAGATCTTCGCCTGCAGTTGGGCGACCGCCTGACCGTCGTTGGCGAAGGCAAGGCTGTAGAGCGTGTGGCCGAGATTTTGGGTGATGAGGTCAAACAGTTGGACAATCCTCATTTGACCACTTTGTTCGGAGGCCTTGTCTTGGGATGTGTTTTCGGCATGATCCCCTTCTATCTGCCCGGTGTCAGTATGCCTATCAAGCTGGGATTAGCCGGCGGCCCTATCATCATCGGTATTCTGATGGGAGCATTCGGGCCACGCTTCCACCTGACCACCTATGTAACCAACAGTGCCAATCTACTTCTGCGCCAATTCGGTATCATCCTCTATCTCGGTGGACTTGGATTGGCCAGTGGAGCCAATTTCTTTGATACCATTATCCATGGGGACGGTCTGCTTTGGGTCGGAGCGGGCTTTTTGATTACGATGCTTCCTACGCTATTGGTCGGTTGGGCTTCTATCAAGTTGCTCCGCAACAGGTACGATGGCACAGCCGGTATGATATGCGGAAGTACGGCCAATCCGATGGCTCTCGACTATGTGAATAGCCAGCTCAAAGGTGACGGAGCCTCTGTGGTGTACGCCACCGTGTATCCGCTTTCGATGTTCGTCCGTATCATCTTCGCACAAATCATGATCCTCATCTTTGCA","7.10","0.42","60581","MDAIVLWLREVFLEPSVTQTIIILSLVCALGLQLGKLRIGTISLGITFVFFVGILASHFGVTTDPVMLTFAQNFGLVIFVYALGLQVGPSFFPSLKKGGIAQNLISLGLVLLTFLLCILLYYILGISMPNLMGIVAGATTNTPALGAAQTTLHQINPDATAEMAEMALACAVTYPLGVVGVIIALALLKVMMPKVEERDDSEAPKAFFSEYEICNPALDGKSVREVALLLKRPFVITRVWHNGKVEIPTSDMILYFGDHILAVSGEEDTSQLEILFGKREMKDWNRPDIDWNSVDKQLVSRRLVITRPKLNGVRLGMLKIRNLYGVNISRVDRAGVELLPDRDLRLQLGDRLTVVGEGKAVERVAEILGDEVKQLDNPHLTTLFGGLVLGCVFGMIPFYLPGVSMPIKLGLAGGPIIIGILMGAFGPRFHLTTYVTNSANLLLRQFGIILYLGGLGLASGANFFDTIIHGDGLLWVGAGFLITMLPTLLVGWASIKLLRNRYDGTAGMICGSTANPMALDYVNSQLKGDGASVVYATVYPLSMFVRIIFAQIMILIFA","619363 621036","TIGR ID: PG0562","conserved hypothetical protein","Inner membrane, Cytoplasm","Numerous significant hits in gapped BLAST to conserved hypothetical protein; e.g. residues 9-557 are 28% similar to (AE000445) putative transport protein of Escherichia coli K12, residues 17-557 are 28% similar to [gi:401596] hypothetical 58.9 kd protein in glvc-ibpb intergenic region of E.coli, residues 20-556 are 27% similar to (U32689) conserved hypothetical protein of Haemophilus influenzae Rd.This sequence is similar to BT1229.","
InterPro
IPR006037
Domain
TrkA-C
PF02080\"[208-277]T\"[299-369]TTrkA_C
PS51202\"[196-278]T\"[286-370]TRCK_C
InterPro
IPR006512
Domain
YidE/YbjL duplication
PF06826\"[23-190]T\"[382-555]TAsp-Al_Ex
TIGR01625\"[28-176]T\"[387-541]TYidE_YbjL_dupl
noIPR
unintegrated
unintegrated
SSF51735\"[138-278]T\"[295-370]TSSF51735


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 396-556 are 32% similar to a (PROTEIN TRANSMEMBRANE HI0035 ORF H1224 PLASMID GLVC-IBPB) protein domain (PD008628) which is seen in YIDE_HAEIN.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Jan 2 11:33:25 2001","Thu Dec 4 12:04:05 2003","Tue Jan 2 11:33:25 2001","","Mon Apr 2 16:48:11 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 7-557 share 41% identity with PG1240, a possible transport protein.","Mon Apr 2 16:48:11 MDT 2001","Mon Apr 2 16:48:11 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 23 to 190 (E-value = 6.5e-51) place PG0508 in the Asp-Al_Ex family which is described as Predicted Permease Membrane Region (PF06826)Residues 208 to 277 (E-value = 2.4e-08) place PG0508 in the TrkA_C family which is described as TrkA-C domain (PF02080)Residues 299 to 369 (E-value = 2.8e-14) place PG0508 in the TrkA_C family which is described as TrkA-C domain (PF02080)Residues 382 to 555 (E-value = 5e-40) place PG0508 in the Asp-Al_Ex family which is described as Predicted Permease Membrane Region (PF06826)","Thu Dec 4 12:04:05 2003","34540373","","","","","","1","","","PG0562" "PG0509","621529","621029","501","TTGTTGGAATGGCGAGGAGATAAGTATGTCAATGGATACTATCCAGTATCCTCCTCAGCTCCGGATTTACTGCTGGAGTGCATCAGCAACGAGAGTAAAAAATACCTTCCCGGAGAGCTTATCGCTGTAGAATGCAAATGGCGCAGCACGGTAAATTTCTTCATTCCTAAGAGCGATGCCGAGAAATACGAAAAATATTTCCGTACTAACAAGACGAGATACCGGGTCAAGCATCTGTTTTATCTTTTCGGCTTCGGATGGTCTGATAATGCACCCGAATCCGTATATATAATCCCATCCACCGCATTGTACGAATACGATGAAAATACGTTTGAAATAACATTTCCAAATGGAGAACTGATTAAGGACAAAAAGATCCGGATGGAAGATTATAAGATGAAATTCAAGAATCTAATTTATACTGTTCCAGAAAACAGAAAGCACCTATCTTACCAAACAAAATCTTTCGATACAAAAAAGAAAGATGAGCCTATGCAAAGA","9.40","4.39","19970","LLEWRGDKYVNGYYPVSSSAPDLLLECISNESKKYLPGELIAVECKWRSTVNFFIPKSDAEKYEKYFRTNKTRYRVKHLFYLFGFGWSDNAPESVYIIPSTALYEYDENTFEITFPNGELIKDKKIRMEDYKMKFKNLIYTVPENRKHLSYQTKSFDTKKKDEPMQR","621571 621029","TIGR ID: PG0563","hypothetical protein","Cytoplasm","No significant hits in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 11:16:52 MDT 2001","","Thu Jun 14 11:16:52 MDT 2001","Thu Jun 14 11:16:52 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:16:52 MDT 2001","Thu Jun 14 11:16:52 MDT 2001","","","Tue Jan 2 11:36:08 2001","Tue Jan 2 11:36:08 2001","Tue Jan 2 11:36:08 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","PG0509 is paralogous to PG1286, a hypothetical protein: residues 1-156 share 79% identity with PG1286.","Wed Jun 20 10:22:50 MDT 2001","Mon Apr 2 18:08:53 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Jun 20 10:12:54 MDT 2001","34540374","","","","","","1","","","PG0563" "PG0509.1","621498","621812","315","TTGACATACTTATCTCCTCGCCATTCCAACAATCTCCAAAAAGGAGAAGTACCCCCCCGTACCCGGCATACCATCTTTGCTGATATTGGAATGCATTACAACCCATTCTTCGAATCGGTCTCCGTAGTATTTATACTTCGTTCTTTGTTTGAAGTACTGCAATGCTTCTTTGAGTTCGCCAATAAGCCGGTTCAATATCTCCATAGTATATTCAAGAAAATGCGATGTTATAGAATGTGTTGCATATTTATTCGTTGCCTCTGTCTGAATAACTTCTGTCTCTTAGCTGATTTCGATCGGAATTTGAAATGCAAT","","","12507","LTYLSPRHSNNLQKGEVPPRTRHTIFADIGMHYNPFFESVSVVFILRSLFEVLQCFFEFANKPVQYLHSIFKKMRCYRMCCIFIRCLCLNNFCLLADFDRNLKCN","","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No significant hits in gapped BLAST.","
noIPR
unintegrated
unintegrated
tmhmm\"[39-57]?\"[76-96]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Tue Jan 2 11:37:12 2001","Tue Jan 2 11:37:12 2001","Tue Jan 2 11:37:12 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG0510","622734","621865","870","ATGGCAAAAAAATTCAAAATAGAACCTATTAACAAAAGGCATATGACACTACACGAAGCAATGGAGAAATTACTCAGAGAGGCTGGAAGAGGTATGACAAAAGATAAAATCGCAGAAAAATTAAATAAAAACAAGTGGTATCAGAAAGAAGACTGTTCAGAAATTAGCCCAAATCAAATTTCAGCGAGAGCAAGCACATACCCAGAGATCTTCCATCGCAAAGGCGGAAAAATTTCTCTAGTTAATAGAAATAGAACACAACAATCCTCATCAAAAGAAGTATCAAAAGCTCCTAAAAATACAAAGCAGATCCACAGAAAAAATATAACATTAGTTGAAAAAGAGCTGCTAGACCAACTAAAAATTAAACTTGACAAAAGTATTGACATATCATCTGCACCTCAATCATCCGGCATATACTGTATACAAATCAAAGACAAAAATAGGCTCCCAGAACGATTTAATGAAATCCTGTCAGAGAGGAATCACAACATTCTTTATTTTGGCATTGCTAAAAACCTAAAAGAGCGATTAGAGCAAGAACTTTTTGCAAAGGGACATGGAACTTTTTTCAGGAGCTTAGGTGCATTACTGGGTTATAGGCCGGAAAAAGGATCATTAGTTGGGAAAAAGAACCAGAAGAATTACAATTACAGATTTCCAAAAAGAGATGAACAAAAAATCATAAAATGGATAATAAATAATCTGGCCGTAAATTGGGTAGAGCTGGAGGAAGATGCACTCCGTTCCATGGAAAAATGTTTAATAAAAAAACATCTACCCCTACTTAACCTCTCAAACAATCCGGCTAAAATTCAAATAATAGAAGAATCACGAGAAGAATGTATTAGAATAGCCAAATCAGAACCA","10.60","23.51","33748","MAKKFKIEPINKRHMTLHEAMEKLLREAGRGMTKDKIAEKLNKNKWYQKEDCSEISPNQISARASTYPEIFHRKGGKISLVNRNRTQQSSSKEVSKAPKNTKQIHRKNITLVEKELLDQLKIKLDKSIDISSAPQSSGIYCIQIKDKNRLPERFNEILSERNHNILYFGIAKNLKERLEQELFAKGHGTFFRSLGALLGYRPEKGSLVGKKNQKNYNYRFPKRDEQKIIKWIINNLAVNWVELEEDALRSMEKCLIKKHLPLLNLSNNPAKIQIIEESREECIRIAKSEP","622734 621865","TIGR ID: PG0565. Reported by Chen et al., 2004, to be highly divergent in ATCC 33277.","hypothetical protein","Cytoplasm","No significant hits in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Tue Feb 22 13:54:38 2005","Tue Jan 2 11:38:19 2001","Tue Jan 2 11:38:19 2001","Tue Jan 2 11:38:19 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 22 13:54:38 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540376","","Chen T, Hosogi Y, Nishikawa K, Abbey K, Fleischmann RD, Walling J, Duncan MJ.Comparative whole-genome analysis of virulent and avirulent strains of Porphyromonas gingivalis.J Bacteriol. 2004 Aug;186(16):5473-9.PMID: 15292149","","Tue Feb 22 13:54:38 2005","","1","","","PG0565" "PG0511","623532","623029","504","ATGTTATTCTTCAAAAGAAGACAATCCTGTATTGCCCACAAGGCAACAGGCAAGAAGCTGTGGTATCCGCAGACAGTCATCAACGGCAGCATTGCCTCCACCCTGCACATCGCAGAACAAATCTCAGAACTTTCGGGAGCCAGCCCGGGCGATGTATTCGGTATCCTGCGCGATTTGGGCATCGTCATGCGCAGGGAATTGGCTTCGGGCAAGAAGATCAAGCTCGACGGCATCGGTTGTTTCCGTCTCATTGCACAGGCCAAAGGATCGGGAGTGGAGAAGAAAGAGGATGTGAAAGCCTCCCAGTTCAACTCCGTTCGGGTCAATTTCAGGGCAGAGTGTCGTTACAATACGGTCACTCGCGAACGGGATTGTACGCTGATCGCTCCGGATCTGAAGTTCGCCGAGTACGGCAAGCCGCTTCCGGCAGGTGCTTCTGCCAATGCAGGCGATAGCAATTCTCAAACCGGTGGTGGCGATCAGGGATCAGGAGGAGGAGGGCTC","10.20","8.28","17891","MLFFKRRQSCIAHKATGKKLWYPQTVINGSIASTLHIAEQISELSGASPGDVFGILRDLGIVMRRELASGKKIKLDGIGCFRLIAQAKGSGVEKKEDVKASQFNSVRVNFRAECRYNTVTRERDCTLIAPDLKFAEYGKPLPAGASANAGDSNSQTGGGDQGSGGGGL","623532 623029","TIGR ID: PG0566","conserved hypothetical protein","Extracellular","One significant hit in gapped BLAST to hypothetical protein; e.g. residues 2-113 are 36% similar to (AF285774) unknown of Bacteroides fragilis.","
InterPro
IPR005902
Family
Putative DNA-binding protein, HU-related
TIGR01201\"[1-168]THU_rel
InterPro
IPR010992
Family
IHF-like DNA-binding
SSF47729\"[31-126]TIHF_like_DNA_bnd


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Jan 2 11:41:59 2001","Tue Jan 2 11:41:59 2001","Tue Jan 2 11:41:59 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","PG0511 is identical to PG1124 and shares 47% identity with PG0502, both conserved hypothetical proteins.","Mon Apr 2 18:12:22 MDT 2001","Thu Feb 22 19:34:08 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Apr 2 18:12:22 MDT 2001","34540377","","","","","","1","","","PG0566" "PG0512","624656","624093","564","ATGGCTACAACGGCAGACTTTCGCAACGGCATGTGTCTCGAAATTGAGGGACAATACTACTTCATCGTCGAATTCCTTCACGTCAAGCCCGGCAAAGGCCCGGCTTTCGTCCGCACCAAACTCAAGAACGTGGCTACAGGACGTATCCTCGATAAGACCTGGAACAGCGGCGTCAAGGTCGAAGAGGTCAGAATAGAACGACGTCCCTATCAGTACCTCTATCAGGACGAGATGGGATACAACTTCATGCACCCCGAAACGTTCGAGCAGATCACCATACCGGGTGCAAGCATCGACGGCGTCCAGTTCCTCAAAGACGGCGATATGGTAGAAGCCATGGTACATGCCACCAGCGAAACGGTACTCACCTGCGAATTGCCTCCGCACGTTAAGCTGCGTGTGACCTACACCGAGCCGGGACTCAAGGGCGACACCGCTACCAACACCTTGAAGCCGGCGACTGTGGAGACGGGAGCTGAAGTACGCGTACCACTCTTCATTCAGGAGGGAGAACTCATCGAAGTGGATACTCGAGACGGTTCCTACATCGGTAGAGTAAAGGAA","5.10","-6.12","21164","MATTADFRNGMCLEIEGQYYFIVEFLHVKPGKGPAFVRTKLKNVATGRILDKTWNSGVKVEEVRIERRPYQYLYQDEMGYNFMHPETFEQITIPGASIDGVQFLKDGDMVEAMVHATSETVLTCELPPHVKLRVTYTEPGLKGDTATNTLKPATVETGAEVRVPLFIQEGELIEVDTRDGSYIGRVKE","624656 624093","TIGR ID: PG0568","elongation factor P","Cytoplasm","Numerous significant hits in gapped BLAST to elongation factor P protein; e.g. residues 1-187 are 59% similar to (U75509) elongation factor P homolog, EF-P of Bacteroides fragilis, residues 1-186 are 52% similar to [gi:2494274] elongation factor P (EF-P) of Mycobacterium tuberculosis, residues 1-186 are 54% similar to (X99289) elongation factor P of Corynebacterium glutamicum.This sequence is similar to CT122.","
InterPro
IPR001059
Domain
Translation elongation factor P/YeiP, central
PF01132\"[67-122]TEFP
InterPro
IPR008991
Domain
Translation protein SH3-like
SSF50104\"[1-63]TTransl_SH3_like
InterPro
IPR011768
Family
Translation elongation factor P
PIRSF005901\"[1-187]TEF-P
TIGR00038\"[1-188]Tefp
InterPro
IPR012340
Domain
Nucleic acid-binding, OB-fold
G3DSA:2.40.50.140\"[64-128]T\"[129-186]TOB_NA_bd_sub
InterPro
IPR013185
Domain
Translation elongation factor, KOW-like
PF08207\"[3-60]TEFP_N
InterPro
IPR013852
Domain
Translation elongation factor P/YeiP, C-terminal
PS01275\"[151-170]TEFP
InterPro
IPR014722
Domain
Translation protein SH3-like, subgroup
G3DSA:2.30.30.30\"[1-63]TRibosomal_L2
InterPro
IPR015365
Domain
Elongation factor P, C-terminal
PF09285\"[130-185]TElong-fact-P_C
noIPR
unintegrated
unintegrated
SSF50249\"[64-128]T\"[129-186]TNucleic_acid_OB


","BeTs to 12 clades of COG0231COG name: Translation elongation factor P/translation initiation factor eIF5-aFunctional Class: JThe phylogenetic pattern of COG0231 is amtkYqvcEbrhujgpolINxNumber of proteins in this genome belonging to this COG is 2","***** IPB001059 (Elongation factor P (EF-P)) with a combined E-value of 2e-67. IPB001059A 22-58 IPB001059B 71-90 IPB001059C 137-185","Residues 1-186 are 59% similar to a (FACTOR PROTEIN BIOSYNTHESIS INITIATION) protein domain (PD002832) which is seen in EFP_BACFR.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Mar 22 12:34:34 MST 2000","Tue Jan 2 11:49:16 2001","Tue Jan 2 11:49:16 2001","Thu Feb 22 19:16:59 MST 2001","Thu Feb 22 19:16:59 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG0512 is essentialy identical (98%) to PG1123, elongation factor P.","Mon Apr 2 18:15:13 MDT 2001","Thu Feb 22 19:16:59 MST 2001","-67% similar to PDB:1YBY Conserved hypothetical protein Cth-95 from Clostridium thermocellum (E_value = 3.7E_47);-61% similar to PDB:1UEB Crystal structure of translation elongation factor P from Thermus thermophilus HB8 (E_value = 6.6E_36);","","","Residues 1 to 186 (E-value = 1e-101) place PG0512 in the EFP family which is described as Elongation factor P (EF-P) (PF01132)","Mon Apr 2 18:15:13 MDT 2001","34540378","","","","","","1","","","PG0568" "PG0513","626314","624791","1524","TTGCTGAGCATCGTGTGTCCGCCTCTTTCGGCTCAGTGGGCTGAAAATTTCGACCACATAACAGCACTGACCTCTCCACCTTGGCGAGGACAGATCGCAGACTTTGCCATCATCAAAAAACAACTCAAGCTCTACGTGGAATATCCCGACGACTTGAACGAATCGCGCATAGCTATCACCGTCCCGTACTTCAAGACTACAACATGGAAAGGCGATGTCAAGCTGGACTTCCGCCCGACCATCAACAACTATCTCTATTGCTACCTGTACTGTTATGGAGAGATCAGCGACTCCGAGTTCGACTATGTAGCTCTTCGCTGGGGTAGCGGCTCGAAAGGGGTGGATCTGCTGGATGTCCGACTCCGCGTTCTCCCTTCAGGCGAGAGCAGCATCGTCCGATCCGATATTCTCATCGATGGTAGCGCATACCCGCTGGGAACAAAGCCATTCACGAGCTTTACGGTCACATACGCAGTTGGCAGCGGTTGGCAGCTTTGGGTCAATGGGGCCAATGATACCGGCAACGAGACTGTCCTCATCGGAAGCTCCTCTTTCGATGTCGAATCCCCTTTCCAATCGGGTGGCCTCGGCATCGACTGCTTCTATACCAAAAGCCGATCCAAGGCTTTCTCTTTCGACAACCTCAGTGTCTCGGAAGGCGCCGTGTCTCCACCGGAAGAAGAGGAAGAACCAATCCCTCTCGGAAAACCTACACTCAACGAACTGATGGCCAACCCACTGGAAGGAGGAAGCGAATACATCGAACTATACAACCCTACGGACAAACCTGTCGTTCCCTCTAAATTCGCCATAGGCATACTCCGCAATGGAAGCTACACCACCACAACTGCACTGCCGACTGTAGCCGATACACTCTATCCGGGACAATACATCGTCTTTGCCAAGAAGAGTGAGGGAGTCACTGACTTCTACCCCCAAGCGCAAAATGTTGTCACGATGAGCAACCTGCCTCAGCTGGCCAATAAGGGATTTACGATCGGACTGTTCGAAGAAGGCCTTGATCAACCTCTTGAAGAAGTGGTCTATTCACCTAAAATGCTCGGAGAAGGAAATGTAACGAGACGAGGGGTATCACTTGAGCGTATCTCCTTCGAGACTCCGGCATCCGATCCGACCAACTGGGCAGGCGGACTCCCATCGGCAGGATATGCTACTCCGGGCTACCTCAACTCCCAATCCTCCAATGCAGATACCACCCAGTTAGGGCTACCCAATAACGAAACAGAAGGCAACGGAAAAAGCTACCTGCCACCGGCAAGTATAGCCGAAGAAATTCTCCTCCTGCCGAAAGGCTCGCTATGCGGCAGTGCTATCTATCTGATGTCTGCAAAAACGGTCAAATACATGGACGGGACAGCTACCAAACGATGGTGCCGCAAATTCTCCGAAGGGAAGGATCTGGGTGAGTCCATAGGCTTGCCCAGTGGCTATTCCTACCTGATTGTCGTATGGATTCAGCGGCCGGATAGCATGGTCTACGCCCGAAAGTGTATCGTTACGCTC","4.60","-16.05","55521","LLSIVCPPLSAQWAENFDHITALTSPPWRGQIADFAIIKKQLKLYVEYPDDLNESRIAITVPYFKTTTWKGDVKLDFRPTINNYLYCYLYCYGEISDSEFDYVALRWGSGSKGVDLLDVRLRVLPSGESSIVRSDILIDGSAYPLGTKPFTSFTVTYAVGSGWQLWVNGANDTGNETVLIGSSSFDVESPFQSGGLGIDCFYTKSRSKAFSFDNLSVSEGAVSPPEEEEEPIPLGKPTLNELMANPLEGGSEYIELYNPTDKPVVPSKFAIGILRNGSYTTTTALPTVADTLYPGQYIVFAKKSEGVTDFYPQAQNVVTMSNLPQLANKGFTIGLFEEGLDQPLEEVVYSPKMLGEGNVTRRGVSLERISFETPASDPTNWAGGLPSAGYATPGYLNSQSSNADTTQLGLPNNETEGNGKSYLPPASIAEEILLLPKGSLCGSAIYLMSAKTVKYMDGTATKRWCRKFSEGKDLGESIGLPSGYSYLIVVWIQRPDSMVYARKCIVTL","626344 624791","TIGR ID: PG0569","conserved hypothetical protein","Outer membrane, Periplasm","No significant hits in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 11:17:29 MDT 2001","","Thu Jun 14 11:17:29 MDT 2001","Thu Jun 14 11:17:29 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:17:29 MDT 2001","Thu Jun 14 11:17:29 MDT 2001","","","Fri Sep 10 13:37:09 2004","Tue Jan 2 11:51:29 2001","Tue Jan 2 11:51:29 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Jun 14 11:17:29 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Jun 20 09:57:01 MDT 2001","34540379","","","","","","1","","","PG0569" "PG0514","626540","627550","1011","ATGAAAATAGCTATTGTCGGCGTTAGCGGAGCTGTTGGACAGGAGTTTTTGCGAGTATTGTCCCAGCGCGATTTTCCCATAGATGGACTTTATCTTTTCGGCTCTTCCCGAAGTGCCGGAAGCGTTTATTCCTTCAAGGGTAAGGAATACGTGGTTCGCGAACTGAAGGACAACGATGATTTCAAGGGGATAGACATCGCTTTCTGTTCGGCCGGAGGCGATACGTCCATAGCTTTTGCCGATACGATAACTCGCCATGGCACTCTGATGATCGATAATTCCAGTGCTTTCCGTATGCAGGAAGACGTTCCCCTCGTGGTGCCGGAGGTAAATGGGGATGATGCCTTGGTACACCCTCGCAATATCATCTCCAATCCGAACTGTACAACGATTCAGATGGTGGTGGCACTCAAGCCGATAGAAGACCTTTCTCACATACGTCGTGTACACGTGGCCACGTATCAGGCTGCCAGTGGTGCAGGTGCGCTGGGTATGGCGGAGTTGGTACAGCAGGCGGAAGAGTTGGCTCGGGGAGAGAAGCCTACCGTGGACAAATTCGCTTACCAGTTGATGTATAACCTGATTCCACAGATCGACGTCTTTACGGACAACGACTACACCAAGGAGGAAATGAAGATGTATCGCGAGACCAAGCGTATCATGCATAGCGATGTGATGGTGAGTGCAACCTGTGTGCGTGTGCCAGTGATGCGTGCCCACTCCGAGGCTATTTGGGTGGAAACGGAACGCCCGATCGCTCCCGAAGAAGCTCGTGCAGCCTTTGCCAAAGCTCCCGGAGTGTTGCTGTGCGATGAGCCGTCAGAGAAGCAGTATCCCATGCCCCTCTTCGGTACGGAGCAAGATCCCGTAATAGTGGGGCGCATTCGGCAGGATTTGGCTAATCCCAGCGGTTTGGTGTTTTGGTGCGTATCGGATCAGATCCGGAAAGGGGCTGCACTCAACGCTGTTCAGATAGCCGAATATCTCATCGCCAAAGGACATTTCGCTCGC","5.30","-7.53","37190","MKIAIVGVSGAVGQEFLRVLSQRDFPIDGLYLFGSSRSAGSVYSFKGKEYVVRELKDNDDFKGIDIAFCSAGGDTSIAFADTITRHGTLMIDNSSAFRMQEDVPLVVPEVNGDDALVHPRNIISNPNCTTIQMVVALKPIEDLSHIRRVHVATYQAASGAGALGMAELVQQAEELARGEKPTVDKFAYQLMYNLIPQIDVFTDNDYTKEEMKMYRETKRIMHSDVMVSATCVRVPVMRAHSEAIWVETERPIAPEEARAAFAKAPGVLLCDEPSEKQYPMPLFGTEQDPVIVGRIRQDLANPSGLVFWCVSDQIRKGAALNAVQIAEYLIAKGHFAR","626540 627550","TIGR ID: PG0571","aspartate semialdehyde dehydrogenase","Cytoplasm, Periplasm","Numerous hits with gapped BLAST to aspartate semialdehyde dehydrogenases; e.g. residues 2-333 are 51% similar to aspartate semialdehyde dehydrogenase (AE000760) of Aquifex aeolicus, residues residues 2-327 are 50% similar to aspartate-semialdehyde dehydrogenase (AL1309077) of Camplybacter jejuni, residues 1-246 are 28% similar to aspartate-semialdehyde dehydrogenase (AE001309) of Chlamydia trachomatis.This sequence is similar to BT3636.","
InterPro
IPR000534
Domain
Semialdehyde dehydrogenase, NAD - binding
PF01118\"[2-118]TSemialdhyde_dh
InterPro
IPR005986
Family
Aspartate-semialdehyde dehydrogenase, bacterial
TIGR01296\"[2-332]Tasd_B
InterPro
IPR012080
Family
Aspartate-semialdehyde dehydrogenase
PIRSF000148\"[1-335]TASA_dh
InterPro
IPR012280
Domain
Semialdehyde dehydrogenase, dimerisation region
PF02774\"[137-316]TSemialdhyde_dhC
noIPR
unintegrated
unintegrated
G3DSA:3.30.360.10\"[127-330]TG3DSA:3.30.360.10
PTHR10174\"[1-167]T\"[188-334]TPTHR10174
PTHR10174:SF2\"[1-167]T\"[188-334]TPTHR10174:SF2
SSF51735\"[1-142]TSSF51735
SSF55347\"[127-317]TSSF55347


","BeTs to 14 clades of COG0136COG name: Aspartate-semialdehyde dehydrogenaseFunctional Class: EThe phylogenetic pattern of COG0136 is amtkyqvcEbrHuj----inxNumber of proteins in this genome belonging to this COG is 1","***** IPB000319 (Aspartate-semialdehyde dehydrogenase) with a combined E-value of 4.3e-70. IPB000319A 3-14 IPB000319B 32-42 IPB000319C 64-74 IPB000319D 90-111 IPB000319E 151-161 IPB000319F 209-221 IPB000319G 227-248 IPB000319H 288-298 IPB000319I 312-327***** IPB000706 (N-acetyl-gamma-glutamyl-phosphate reductase, active site) with a combined E-value of 2.2e-08. IPB000706A 3-24 IPB000706C 123-140 IPB000706F 304-337","Residues 133-333 are 48% similar to a (DEHYDROGENASE ASPARTATE-SEMIALDEHYDE ASA OXIDOREDUCTASE) protein domain (PD002095) which is seen in DHAS_AQUAE.Residues 127-319 are 31% similar to a (ASPARTATE-SEMIALDEHYDE DEHYDROGENASE ASA OXIDOREDUCTASE) protein domain (PD011448) which is seen in DHAS_SALTY.Residues 119-184 are 46% similar to a (ASPARTATE-SEMIALDEHYDE DEHYDROGENASE ASA) protein domain (PD188320) which is seen in DHAS_STRAK.Residues 2-114 are 56% similar to a (DEHYDROGENASE OXIDOREDUCTASE BIOSYNTHESIS NADP) protein domain (PD001262) which is seen in DHAS_AQUAE.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Apr 17 14:53:30 MDT 2001","Mon Dec 22 11:33:59 2003","Tue Apr 17 14:53:30 MDT 2001","Tue Apr 17 14:53:30 MDT 2001","Tue Apr 17 14:53:30 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Fri Apr 7 13:20:23 MDT 2000","Tue Apr 17 14:53:30 MDT 2001","-59% similar to PDB:2GYY Structure of aspartate semialdehyde dehydrogenase (ASADH) from Streptococcus pneumoniae (E_value = 6.3E_69);-59% similar to PDB:2GZ1 Structure of Aspartate Semialdehyde Dehydrogenase (ASADH) from Streptococcus pneumoniae complexed with NADP (E_value = 6.3E_69);-59% similar to PDB:2GZ2 Structure of Aspartate Semialdehyde Dehydrogenase (ASADH) from Streptococcus pneumoniae complexed with 2',5'-ADP (E_value = 6.3E_69);-59% similar to PDB:2GZ3 Structure of Aspartate Semialdehyde Dehydrogenase (ASADH) from Streptococcus pneumoniae complexed with NADP and aspartate-semialdehyde (E_value = 6.3E_69);-47% similar to PDB:2HJS The structure of a probable aspartate-semialdehyde dehydrogenase from Pseudomonas aeruginosa (E_value = 1.3E_29);","","","Residues 1 to 123 (E-value = 1.7e-43) place PG0514 in the Semialdhyde_dh family which is described as Semialdehyde dehydrogenase, NAD binding domain (PF01118)Residues 137 to 316 (E-value = 2.5e-70) place PG0514 in the Semialdhyde_dhC family which is described as Semialdehyde dehydrogenase, dimerisation domain (PF02774)","Mon Dec 22 11:33:59 2003","34540380","","","","","","1","","","PG0571" "PG0515","628224","629156","933","ATGCATTGTCCTGATAAAGAGAGTGTTTATCACATACCGGTGATGCTCGGCGAGTGTTTGGAAGGATTGCGTATTGATCCTGACGGGTGCTATGTCGATGTCACGTTCGGCGGCGGCGGACATTCCCGGGCTATCGTGGAAAAATTAAGCTCCAAAGGACGGCTGTACGGGTTCGACCAAGATGCCGATGCTTGTCGAAACATTCTCCAAGATGAGCGCTTCACCTTTGTAACTTCCAACTTCCGCTACCTCGCCAACTTCATGGATTATTACGGAGAGGATGGAGTCGACGGCATATTGGCAGACCTTGGTGTATCGTCACATCATTTCGACGAAGAGGAGCGCGGATTCAGTTTCCGTTCGGAAAGTCCTCTTTTGGACATGAGAATGAACGCTCGTGCCGGCCGCAATGCAGCTGCCATCTTGAACGAATACGATGCCTCGTCCCTGTCCGCCCTCTTCTATCACTATGGGGAACTGAAACAGGCACGTCGTTTTGCTGCATCCATTGTCCACTACAGGGAGTCTCTTTCCGGCGGACTGCAAACTGTGGGGCAACTTCTCGAGGCCGTGCGCGGTCTCATCTCTCCGCGAGAAGAAAAGAAACAGTTGGCCTGCATCTTCCAAGCCTTGCGCATCGAGGTAAACGATGAGTTGGGAGCTTTGCAGCAAATGCTCGAAGCAGCCCTCGGCTGTCTGAGAAGTGGTGGGCGACTTGTGGTAATGACGTACCATTCGCTTGAGGACAGGATGGTCAAAAACGTCCTTCGCTACGGAACTGTAAAGGCACCCGATGAAGATTCTTTGCGTCTGTACGGAGCACCACAGAGTCCTTGGCAACAGATCACTCGCAAGCCGCTGACAGCTTCGACAAAAGAGCTGTCCGACAACCCCCGTTCAAGAAGTGCCAAACTACGAATAGCAGAAAAAATA","6.30","-3.34","34785","MHCPDKESVYHIPVMLGECLEGLRIDPDGCYVDVTFGGGGHSRAIVEKLSSKGRLYGFDQDADACRNILQDERFTFVTSNFRYLANFMDYYGEDGVDGILADLGVSSHHFDEEERGFSFRSESPLLDMRMNARAGRNAAAILNEYDASSLSALFYHYGELKQARRFAASIVHYRESLSGGLQTVGQLLEAVRGLISPREEKKQLACIFQALRIEVNDELGALQQMLEAALGCLRSGGRLVVMTYHSLEDRMVKNVLRYGTVKAPDEDSLRLYGAPQSPWQQITRKPLTASTKELSDNPRSRSAKLRIAEKI","628224 629156","TIGR ID: PG0573","conserved hypothetical protein","Cytoplasm","Numerous significant hits in gapped BLAST to conserved hypothetical protein; e.g. residues 7-311 are 39% similar to (U94707) unknown of Enterococcus faecalis, residues 11-310 are 39% similar to [gi:1730600] hypothetical 35.3 kda protein in the ftsl 5' region of B.subtilis, residues 7-311 are 39% similar to [gi:2624083] mraW of Enterococcus hirae. This sequence is orthologous to CT272.","
InterPro
IPR002903
Family
Bacterial methyltransferase
PD004685\"[241-310]TBact_methyltrans
PTHR11265\"[26-311]TBact_methyltrans
PF01795\"[8-311]TMethyltransf_5
TIGR00006\"[7-311]TBact_methyltrans
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.150\"[2-310]TG3DSA:3.40.50.150
PIRSF004486\"[10-311]TMraW
SSF53335\"[5-311]TSSF53335
SSF81799\"[114-215]TSSF81799


","BeTs to 12 clades of COG0275COG name: Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesisFunctional Class: MThe phylogenetic pattern of COG0275 is -----qvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** PF01795 (Domain of unknown function) with a combined E-value of 1.9e-85. PF01795A 11-49 PF01795B 95-130 PF01795C 137-167 PF01795D 206-253 PF01795E 287-310","Residues 11-310 are 39% similar to a (PROTEIN CONSERVED ORFB MG222) protein domain (PD004685) which is seen in O07104_ENTFA.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Mar 22 11:56:40 MST 2000","Tue Jan 2 12:01:02 2001","Tue Jan 2 12:01:02 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","-51% similar to PDB:1WG8 Crystal structure of a predicted S-adenosylmethionine-dependent methyltransferase TT1512 from Thermus thermophilus HB8. (E_value = 2.3E_46);-50% similar to PDB:1M6Y Crystal Structure Analysis of TM0872, a Putative SAM-dependent Methyltransferase, Complexed with SAH (E_value = 2.0E_34);-50% similar to PDB:1N2X Crystal Structure Analysis of TM0872, a Putative SAM-dependent Methyltransferase, Complexed with SAM (E_value = 2.0E_34);-45% similar to PDB:2DVK Crystal Structure of Hypothetical protein from Aeropyrum pernix (E_value = 2.0E_34);-51% similar to PDB:1OBB ALPHA-GLUCOSIDASE A, AGLA, FROM THERMOTOGA MARITIMA IN COMPLEX WITH MALTOSE AND NAD+ (E_value = 2.0E_34);","","","Residues 8 to 311 (E-value = 7.5e-112) place PG0515 in the Methyltransf_5 family which is described as MraW methylase family (PF01795)","","34540382","","","","","","1","","","PG0573" "PG0516","629159","629629","471","ATGGCAGACACTGCGAAAAACAATATCAGCGAAGAGGAGGACATCCTTTGCGAGAAAGAAGGGAGCTCTCCTGAGTGGGAGACCTCGACAGAAGAGGAAGCATTCCTTCACAACTCTTACTCCGCGGCTTCAAAGAGAAAGAATAGTTTTTGGAACGTGATGGGAGGATCTTTCCTCGATCACCCATGGATAGCCAGCAACTGGAAGTTGGGACTGGTCATCGTCGTGATGTCCGTCATTAACATTTGGAACGGCTACCAAGCCATCGAGCAGGTGCGCGAAATAGGCCGTCTGGAGGAACAAGTGAAAGATTATCGCTATCGTGCCCTGTTCAAAGCTTCTGAAGTTACTGCTATGAGTCAGAAACTGAATGTAGAGAAAGCCATCCAATCGCAAAACCTCGAGCTGACACTCTCGCAGACTCCGCCATACATTCTCTACCGTCCTGTCGATACTGATCGGCGCAAGAAA","5.20","-3.56","18091","MADTAKNNISEEEDILCEKEGSSPEWETSTEEEAFLHNSYSAASKRKNSFWNVMGGSFLDHPWIASNWKLGLVIVVMSVINIWNGYQAIEQVREIGRLEEQVKDYRYRALFKASEVTAMSQKLNVEKAIQSQNLELTLSQTPPYILYRPVDTDRRKK","629159 629629 [Delay by 102 685 100 0]","TIGR ID: PG0574","hypothetical protein","Cytoplasm","No significant hits in gapped BLAST.","
noIPR
unintegrated
unintegrated
tmhmm\"[63-83]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Jan 2 12:02:12 2001","Tue Jan 2 12:02:12 2001","Tue Jan 2 12:02:12 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","-52% similar to PDB:1B72 PBX1, HOMEOBOX PROTEIN HOX-B1/DNA TERNARY COMPLEX (E_value = );-67% similar to PDB:1JOF Neurospora crassa 3-carboxy-cis,cis-mucoante lactonizing enzyme (E_value = );-60% similar to PDB:2DY7 Solution structure of the first chromodomain of yeast Chd1 (E_value = );-60% similar to PDB:2H1E Tandem chromodomains of budding yeast CHD1 (E_value = );","","","No significant hits to the Pfam 11.0 database","","34540383","","","","","","1","","","PG0574" "PG0517","629642","631840","2199","ATGAAACAGGAAGAGACAAACAATCCGGTGACCATCAAGGCCGTACGCCGCTACCGCATCGTGGGAGCGTTGATGATTGTATTCTTGCTCGTGGTATTCGGTAAGATTCTGAAGACAATTTTTGTTGAAGGGGACAAGTGGCGTACCATCGGAGAAACTCTTCATCGCCCCGAACCGGTGGATCTGGCACCTATTCGCGGCAATATATACGCTACAGACGGGAGAGCCGTGGCCATAACGGCTCCTTACTTTCGTCTGTACTTCGATTTCCAAGCGGATCCGCTCAAAGCAATCAAAAAGGATAGTCTGAATAAGCTGCTTGATACGCTGGCTCTCAATATCAGTCGCAAGCTCTCTACCCAATACGAAAAGATAAAACCGGCCGACCTGAAAAAGAAATGGCGAGAAGGCATGGCAAAGAAGAGTCGCTATTGGCCGGTGATCAATCGAGATATATCCTATCTGCAAATGAAGGAACTGTACGACATGGCACCTCTGGCGCGTGTGCCTCGCAAAGGGCTGGGCCCGATACCGAGGAGTATACGTCCGGAAGAGAAAGCCAAGCGAATGATGCCGTTCGGCTCATTGGGCAGTCGTACCATCGGCAGCGTTTACGGATCGATGGAAGGGGGTTTGTCACAAGGGAAAAACGGTATAGAACTCTTCTACGACAAGCAGCTCAGGGGAGAAATAGGCAAAGCCAGCCGTGTGTATGTAGGAGGACGAAGAATACTGAATACGATACAGGCTCCCAAGCGTGGCTGCGATGTCTATACCACTCTCGACATGGATATGCAGAGCATAGTCGAAGTGGAGTTGCGCAGCAAGCTCGAAGAGGTGCAGGGAGAAAGTGGAACCGCCATCCTCATGGAGGTAGCTACAGGGCAGGTAAAGGCTATCACCAATCTACAGCGCACGCCCTCCGGCGGATATATCGAATCCAAGAACTACGCAGTAGCCGATATGTCAGAACCCGGTTCTACGTTCAAGACCGTGTCGATGATGGTAGCACTCGATGCCGGCATTGTGCATCCGGAGGACATCATCGAAACGGGCAATGGTCTCTTCTCCGTAGGCAAGCGTACTGTAAGAGACCATAATGCACACAAAGGAGGGTATGGCCCCCTTACGGCAGCTCAGACGATTTGGTACTCAAGCAACGTAGGCGTAGCCAAAATCATTCTCAAAGGCTTTGCCCACGATCCCGACAAATACGTGGAGGCGGTCAGGCGAACCGGTATCACGGACAAGTTCCGTCTGGAAATACCCGGAGAAGCTCCGGCCGTAGTGCGCAAGCGTGCCGACAATCCTGACCGCTGGTATGGCACGACCCTTGCATGGATGTCATTCGGATACGAAACCCAAATCCCGCCGATCCATACATTGGCTTTCTACAATGCCGTTGCCAACGGTGGTAGAATGATGCGTCCCTACTTCGTAACGAAAGTGATGGATAGAGGGGAGGTCGTACAGGAGCACCGGCCGGTAGTATTACGCGATTCCATCTGCAAGCACTCTACGCTTATCGCCATACAGGATATGCTCTCGAACGTAGTGGCCAAAGGGACCGGCTCGCCGGTCAAAAGCTCTACGGTAAACATCAGCGGCAAGACCGGTACAGCGCAGATCTCACAGGGCAAAAGCGGTTATCGTGCAGGTGGCACCATGCACTTGGTATCTTTCTGTGGTTATTTCCCATCCGAAAACCCCAAGTACACGTGTATGGTGGTTGTACGGGGGCCCCGTGGCGTATATCCCTCAGGTGGCGGAATCTCCGGAGTAGTGGTAAAACAGATAGCCGAAAAGCTGCTGGCCATTCAAGAGCCGGAGCCATTCGACACGGTAAGTCCATTGCCGGACATCAAATATCTGCCGACTGTACGTGCCGGCCAACGCGAACCAATCGTATCGGCATTGAAATCATTGAATCTGCCCATCAGAATAGCGTCCGAATGTGGCAAAAATCAGTGGGTACGTCCTACGGTGGAGAGCGGGCGTATAAGCCTGAAGCCATTGCCCTCTGTCAAACGTGGCGTAATGCCTGATGTCCATGGACTCTCGGCACAGGATGCTTTGTACATGCTACAGCTCTCAGGGTTGAAAGTAAGGACGAACGGATGGGGACATGTAGTGGCTCAGTCCGTTCCGTACGGCTCTAAAGTGAAAGTGGGGCAGACTGTCGTCATAGACTTATCTATG","10.60","36.45","80729","MKQEETNNPVTIKAVRRYRIVGALMIVFLLVVFGKILKTIFVEGDKWRTIGETLHRPEPVDLAPIRGNIYATDGRAVAITAPYFRLYFDFQADPLKAIKKDSLNKLLDTLALNISRKLSTQYEKIKPADLKKKWREGMAKKSRYWPVINRDISYLQMKELYDMAPLARVPRKGLGPIPRSIRPEEKAKRMMPFGSLGSRTIGSVYGSMEGGLSQGKNGIELFYDKQLRGEIGKASRVYVGGRRILNTIQAPKRGCDVYTTLDMDMQSIVEVELRSKLEEVQGESGTAILMEVATGQVKAITNLQRTPSGGYIESKNYAVADMSEPGSTFKTVSMMVALDAGIVHPEDIIETGNGLFSVGKRTVRDHNAHKGGYGPLTAAQTIWYSSNVGVAKIILKGFAHDPDKYVEAVRRTGITDKFRLEIPGEAPAVVRKRADNPDRWYGTTLAWMSFGYETQIPPIHTLAFYNAVANGGRMMRPYFVTKVMDRGEVVQEHRPVVLRDSICKHSTLIAIQDMLSNVVAKGTGSPVKSSTVNISGKTGTAQISQGKSGYRAGGTMHLVSFCGYFPSENPKYTCMVVVRGPRGVYPSGGGISGVVVKQIAEKLLAIQEPEPFDTVSPLPDIKYLPTVRAGQREPIVSALKSLNLPIRIASECGKNQWVRPTVESGRISLKPLPSVKRGVMPDVHGLSAQDALYMLQLSGLKVRTNGWGHVVAQSVPYGSKVKVGQTVVIDLSM","629642 631840","TIGR ID: PG0575","penicillin-binding protein","Inner membrane, Periplasm","Numerous significant hits in gapped BLAST to penicillin-binding protein; e.g. residues 185-732 are 27% similar to (AP001516) penicillin-binding protein 2B (cell-division septum) of Bacillus halodurans, residues 17-616 are 25% similar to (AE003919) penicillin binding protein 3 of Xylella fastidiosa, residues 114-611 are 27% similar to (D90903) penicillin-binding protein of Synechocystis sp.This sequence is similar to BT3453.","
InterPro
IPR001460
Domain
Penicillin-binding protein, transpeptidase
PF00905\"[285-601]TTranspeptidase
InterPro
IPR005311
Domain
Penicillin-binding protein, dimerisation domain
PF03717\"[61-248]TPBP_dimer
SSF56519\"[61-259]TPBP_dimer
InterPro
IPR005543
Domain
PASTA
PF03793\"[678-733]TPASTA
PS51178\"[674-733]TPASTA
InterPro
IPR012338
Domain
Penicillin-binding protein, transpeptidase fold
SSF56601\"[260-608]TPBP_transp_fold
noIPR
unintegrated
unintegrated
G3DSA:3.40.710.10\"[263-608]TG3DSA:3.40.710.10
SSF54184\"[677-733]TSSF54184


","BeTs to 11 clades of COG0768COG name: Cell division protein FtsI/penicillin-binding protein 2Functional Class: MThe phylogenetic pattern of COG0768 is -----QVcEBRHUJ--OLINXNumber of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","Residues 219-425 are 29% similar to a (PROTEIN PENICILLIN-BINDING BINDING PENICILLIN CELL) protein domain (PD000435) which is seen in Q51233_NEIME.Residues 511-611 are 33% similar to a (PROTEIN PENICILLIN-BINDING BINDING PENICILLIN 2B CELL) protein domain (PD011751) which is seen in P73117_SYNY3.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Jan 2 12:07:30 2001","Mon Dec 22 11:13:59 2003","Mon Dec 22 11:13:59 2003","","Wed Nov 7 14:48:30 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 64-594 are 23% similar to PG1224.","Tue Jan 2 12:07:30 2001","Wed Nov 7 14:48:30 2001","-39% similar to PDB:1PYY Double mutant PBP2x T338A/M339F from Streptococcus pneumoniae strain R6 at 2.4 A resolution (E_value = 3.4E_23);-39% similar to PDB:1PMD PENICILLIN-BINDING PROTEIN 2X (PBP-2X) (E_value = 4.5E_23);-39% similar to PDB:1QME PENICILLIN-BINDING PROTEIN 2X (PBP-2X) (E_value = 4.5E_23);-39% similar to PDB:1QMF PENICILLIN-BINDING PROTEIN 2X (PBP-2X) ACYL-ENZYME COMPLEX (E_value = 4.5E_23);-43% similar to PDB:1K25 PBP2x from a Highly Penicillin-resistant Streptococcus pneumoniae Clinical Isolate (E_value = 5.8E_23);","","","Residues 61 to 248 (E-value = 2.4e-05) place PG0517 in the PBP_dimer family which is described as Penicillin-binding Protein dimerisation domain (PF03717)Residues 285 to 601 (E-value = 3.3e-46) place PG0517 in the Transpeptidase family which is described as Penicillin binding protein transpeptidase domain (PF00905)","Mon Dec 22 11:13:59 2003","34540384","","","","","","1","","","PG0575" "PG0518","631860","633320","1461","ATGAAACTCGAACAATATCTCTCGGAACTGCGGCCGATAGCTGTCATTGGCAATATCGAACAGGAAGTATCAGATATTGCATCTGATTCTCGCAAGGCTACGGACGGTGCACTCTTCGTAGCCGTTCGTGGAACACTGACAGATGGGCACAGATACATACCGCAAGCATACACACAAGGCTGTCGCGCCTTTGTCGTGGAGGACCTTCCCGATGAAAAGCCGGAAGGATGCTGTTTTGTCCAAGTGTCGGATACAGCCGAAGCATTAGCTTCTTTGGCCTCTGCATACTACGGACATCCATCTCGCCATCTGACTCTGGTCGGTGTAACCGGTACGAACGGCAAGACCACCGTAGCCACTCTACTATATCGACTATTCCGAAAAATGGGATATAAAGCCGGTCTGGTGAGTACGGTTTGCAACTATGTGGATGACCGGTCCGAACCGACCACTCACACCACACCGGATCCATTGGCATTGAATGCTCTTTTCCGTCGAATGGCAGATGCAGGTTGCGAATATGCTTTTATGGAAGTTAGCTCTCATGCAGCGGCACAAAAGAGAATCGGTGCTCTTGACTTCGACGGCGGAATCTTTACGAATCTTACTCGTGACCATCTTGACTATCACGGCTCCGTACCGGAGTATTTGCGAGCTAAAAAGAGTTTTTTCGATGGCCTCGGTGCTCAAGCTTTCGCATTGGTCAATGCCGATGATAAGAACGGCCTCGTAATGGTACAAAACACCCGAGCACGTGTATGTACCTATGCACTGAAGAGCATGGCAAACTATCGAGCCAAGATAGTAGAAAGACATATCGATGGAATGGATATGTATATGGATGACAGAGAAGTCTTTGTCCGTCTGGTAGGAGATTTCAATGCCTACAACCTGCTGTGTGTGTACGGGGCATCCTGCGAATTAGGACAGGATAGGGAGGAAGTACTGCGTATCCTATCGGAATTGACCTCCGTGGATGGTCGTTTCCAAACGTTTACATCCAAGGACGGCTATGTAGCCATCGTGGACTATGCGCACACGCCGGATGCACTGATCAATGTATTGGATACCATACGACCACTGGCAAAATCGCACAAGGTGATCACAGTGGTAGGAGCAGGAGGCAATCGGGACAAAGGCAAACGTCCGATCATGGCAAAGGAGGCAGCCCGCAGAAGCGAACGTTTGATCCTGACATCGGACAATCCGCGTGATGAAGAGCCTCAAGAAATAATCCAAGAAATGGCTATCGGACTTTCGACAGAAGACAGGAAGAAAACACTGCTCATTACTGATCGGGCGGAAGCCATCCGCACGGCCTGCATGCTGGCAGAGAAGGGAGACTTTGTTTTGATAGCCGGCAAAGGTCATGAAACTTATCAGGAAATCAGAGGTGTCAAGCACCATTTTGATGATCGCGAAGTGGTCTGCGATGCCATGTCGAAAGATCGTATCGTTCAA","6.20","-6.30","53982","MKLEQYLSELRPIAVIGNIEQEVSDIASDSRKATDGALFVAVRGTLTDGHRYIPQAYTQGCRAFVVEDLPDEKPEGCCFVQVSDTAEALASLASAYYGHPSRHLTLVGVTGTNGKTTVATLLYRLFRKMGYKAGLVSTVCNYVDDRSEPTTHTTPDPLALNALFRRMADAGCEYAFMEVSSHAAAQKRIGALDFDGGIFTNLTRDHLDYHGSVPEYLRAKKSFFDGLGAQAFALVNADDKNGLVMVQNTRARVCTYALKSMANYRAKIVERHIDGMDMYMDDREVFVRLVGDFNAYNLLCVYGASCELGQDREEVLRILSELTSVDGRFQTFTSKDGYVAIVDYAHTPDALINVLDTIRPLAKSHKVITVVGAGGNRDKGKRPIMAKEAARRSERLILTSDNPRDEEPQEIIQEMAIGLSTEDRKKTLLITDRAEAIRTACMLAEKGDFVLIAGKGHETYQEIRGVKHHFDDREVVCDAMSKDRIVQ","631854 633320","TIGR ID: PG0576","N-acetylymuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase","Cytoplasm","Numerous significant hits in gapped BLAST to UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase protein; e.g. residues 1-482 are 39% similar to (AP001515) UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase of Bacillus halodurans, residues 1-480 are 38% similar to (Z99111) UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase of Bacillus subtilis, residues 19-483 are 38% similar to [gi:8134574] udp-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase of Aquifex aeolicus.This sequence is orthologous to CT269 and to BT3452.","
InterPro
IPR000713
Domain
Cytoplasmic peptidoglycan synthetase, N-terminal
PF01225\"[22-97]TMur_ligase
InterPro
IPR004101
Domain
Cytoplasmic peptidoglycan synthetases, C-terminal
PF02875\"[325-412]TMur_ligase_C
InterPro
IPR005761
Family
UDP-N-acetylmuramyl-tripeptide synthetase
TIGR01085\"[20-481]TmurE
InterPro
IPR012237
Family
UDP-N-acetylmuramate-alanine ligase
PIRSF001562\"[3-474]TUDP-NAcM_Alig
InterPro
IPR013221
Domain
Mur ligase, middle region
PF08245\"[107-305]TMur_ligase_M
noIPR
unintegrated
unintegrated
G3DSA:3.40.1190.10\"[100-328]TG3DSA:3.40.1190.10
G3DSA:3.40.1390.10\"[3-99]TG3DSA:3.40.1390.10
G3DSA:3.90.190.20\"[330-480]TG3DSA:3.90.190.20
PTHR23135\"[109-127]T\"[148-483]TPTHR23135
PTHR23135:SF4\"[109-127]T\"[148-483]TPTHR23135:SF4
SSF53244\"[325-480]TSSF53244
SSF53623\"[100-324]TSSF53623
SSF63418\"[5-99]TSSF63418


","BeTs to 12 clades of COG0769COG name: UDP-N-acetylmuramyl tripeptide synthaseFunctional Class: MThe phylogenetic pattern of COG0769 is --T--qvCebRhuj--olinxNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 372-476 are 55% similar to a (LIGASE SYNTHETASE) protein domain (PD039268) which is seen in O67631_AQUAE.Residues 98-263 are 33% similar to a (LIGASE SYNTHETASE PEPTIDOGLYCAN SYNTHESIS CELL ENZYME) protein domain (PD001083) which is seen in MURE_BACSU.Residues 76-229 are 25% similar to a (UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--2,) protein domain (PD212530) which is seen in MURE_TREPA.Residues 283-370 are 36% similar to a (LIGASE SYNTHETASE PEPTIDOGLYCAN SYNTHESIS CELL ENZYME) protein domain (PD001216) which is seen in MURE_BACSU.","","Thu Jun 14 11:18:07 MDT 2001","","Thu Jun 14 11:18:07 MDT 2001","Thu Jun 14 11:18:07 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:18:07 MDT 2001","Thu Jun 14 11:18:07 MDT 2001","","","Wed Mar 22 11:53:45 MST 2000","Mon Dec 22 11:12:00 2003","Tue Jan 2 13:46:55 2001","","Wed Jun 20 09:48:31 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 26-372 are 26% similar to PG0985, residues 10-128 are 34% similar to PG0976.","Wed Jun 20 09:56:29 MDT 2001","Tue May 22 15:16:07 MDT 2001","-47% similar to PDB:1E8C STRUCTURE OF MURE THE UDP-N-ACETYLMURAMYL TRIPEPTIDE SYNTHETASE FROM E. COLI (E_value = 2.3E_57);","","","Residues 35 to 316 (E-value = 3.7e-58) place PG0518 in the Mur_ligase family which is described as Mur ligase family, catalytic domain (PF01225)Residues 325 to 414 (E-value = 4e-25) place PG0518 in the Mur_ligase_C family which is described as Mur ligase family, glutamate ligase domain (PF02875)","Mon Dec 22 11:12:00 2003","34540385","","","","","","1","","","PG0576" "PG0519","633338","634594","1257","ATGTTGTACTATCTGTTTGATTATCTCGAAAAGCTACAGCTCCCCGGAGCGCGACTGTTCCATTACGTGTCATTTCGGTCGGCTGTGGCCATTGTTTTGGCTTTGTTGCTTGCTACCGTCATCGGCAACCGAATCATCGAAAGGCTACGAAAGGCTCAAATAGGCGAGACTATTCGCGATTTGGGGCTGGAAGGACAACTCAGCAAAAAAGGAACGCCCACGATGGGAGGTCTGATCATTATCATCTCCATTCTGATCCCCACTCTATTGTTGGCCCGTCTTGATAATGTATATATCCTGCTCATGATCGTCACCACTGTCTTGCTCGGCTCATTAGGCTTTTTGGATGACTACATCAAGGTTTTCCGTAAGAAGAAAGAGGGCTTGCACGGACGTTACAAAATAATCGGACAGGTTGGACTTGGCTTCATCATCGGTATAGTACTGTATATGAATCCTGCGGTCGTGATCAAAGAAAATAGCGAAGTGCTTCGGGATGGACAGGTCGAACGTGTACACTTCAACAAACAGGAGGTAAAATCGACTAAGACAACGATCCCCTTTGTCAAGAACAATAATTTCGACTACGCCGATATACTTCCGCTCGAAGGCAAAACAAAAGTGCTATTCGGCTGGATTCTCTTCGTCTGCGTAGCTGTAGTGGTAGTCACCTTTATATCCAACTGTGCCAATCTGACTGATGGGTTGGATGGTTTAGCGACGGGGTCTTCTGCTATTATCGGAGTTGTACTGGCTATTTTTGCCTATGTCTCCTCCCATATCGAGATGGCCTCATATCTGAATATCATGTTTATTCCCGGAGCAGAGGAGCTGACCATTTTTGCTTTTGCTTTCGTTGGTGCCACGATCGGTTTTCTGTGGTACAATGCTTATCCGGCACAGGTCTTTATGGGAGATACAGGAAGTCTCACTTTGGGAGGAATCATCGCTGTTTTCGCTCTGATCATTCGCAAAGAAATGCTACTGCCCATCCTCTGCTTCGTATTTATCATAGAGGGTCTTTCCGTGATGATTCAGGTCTTCTATTTCAAGCTGACGAAGCGGAGGACAGGTGAAGGTCGGCGCATTTTCAAAATGACTCCCCTCCACCACCATTTCCAAAAGCCCGGTAATGCCGGCATAGATGCATGGCTACAGAAGCCTATGCAGGCTATTCCCGAATCGAAAATCACTGTTCGCTTTTGGCTCGTAGGGATTATCATGGCTGCAATTACAATAGCAACACTCAAGATGCGA","10.30","14.55","46621","MLYYLFDYLEKLQLPGARLFHYVSFRSAVAIVLALLLATVIGNRIIERLRKAQIGETIRDLGLEGQLSKKGTPTMGGLIIIISILIPTLLLARLDNVYILLMIVTTVLLGSLGFLDDYIKVFRKKKEGLHGRYKIIGQVGLGFIIGIVLYMNPAVVIKENSEVLRDGQVERVHFNKQEVKSTKTTIPFVKNNNFDYADILPLEGKTKVLFGWILFVCVAVVVVTFISNCANLTDGLDGLATGSSAIIGVVLAIFAYVSSHIEMASYLNIMFIPGAEELTIFAFAFVGATIGFLWYNAYPAQVFMGDTGSLTLGGIIAVFALIIRKEMLLPILCFVFIIEGLSVMIQVFYFKLTKRRTGEGRRIFKMTPLHHHFQKPGNAGIDAWLQKPMQAIPESKITVRFWLVGIIMAAITIATLKMR","633338 634594","TIGR ID: PG0577","phospho-N-acetylmuramoyl pentapeptide transferase","Inner membrane, Cytoplasm","Numerous significant hits in gapped BLAST to phospho-N-acetylmuramoyl pentapeptide transferase protein; e.g.residues 1-419 are 36% similar to (AE004856) phospho-N-acetylmuramoyl-pentapeptide-transferase of Pseudomonas aeruginosa, residues 1-419 are 36% similar to (AY008276) phospho-N-acetylmuramoyl-pentapeptide translocase of Pseudomonas aeruginosa, residues 1-419 are 35% similar to (AB052554) MraY of Shewanella violacea.This sequence is similar to BT3451.","
InterPro
IPR000715
Family
Glycosyl transferase, family 4
PTHR22926\"[48-168]T\"[206-419]TGlyco_trans_4
PF00953\"[99-329]TGlycos_transf_4
InterPro
IPR003524
Family
Phospho-N-acetylmuramoyl-pentapeptide transferase
PTHR22926:SF3\"[48-168]T\"[206-419]TPNAcPpept_trans
TIGR00445\"[38-419]TmraY
PS01347\"[69-81]TMRAY_1
PS01348\"[228-239]TMRAY_2


","BeTs to 15 clades of COG0472COG name: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferaseFunctional Class: MThe phylogenetic pattern of COG0472 is -mTkyQVCEBRHUJ--olinXNumber of proteins in this genome belonging to this COG is 2","***** PF00953 (Glycosyl transferase) with a combined E-value of 1.4e-33. PF00953A 103-129 PF00953B 228-239 PF00953C 290-322","Residues 267-404 are 47% similar to a (TRANSFERASE TRANSMEMBRANE) protein domain (PD001416) which is seen in MRAY_RICPR.Residues 42-124 are 39% similar to a (TRANSFERASE TRANSMEMBRANE) protein domain (PD002261) which is seen in MRAY_ECOLI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Mar 22 15:15:00 MST 2000","Mon Dec 22 11:10:28 2003","Tue Jan 2 13:50:15 2001","Tue May 22 15:16:52 MDT 2001","Tue May 22 15:16:52 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 31-356 are 24% similar to PG0093.","Tue Jan 2 13:59:19 2001","","No significant hits to the PDB database (E-value < E-10).","","","Residues 99 to 329 (E-value = 4.3e-46) place PG0519 in the Glycos_transf_4 family which is described as Glycosyl transferase (PF00953)","Tue May 22 15:16:52 MDT 2001","34540386","","","","","","1","","","PG0577" "PG0520","634621","635970","1350","ATGGACCGATTGAAATATGATATAGTTGTTCTCGGAGCAGGAGAAAGCGGAGTAGGAGCAGCTCTTTTGGCTCAAGCCAAAGGTCTGCATGTATTTGTATCCGACTACGGAAAGATAGCCCCGAAATACAAGGAAGAACTTAACCGATATGCCATACCGTACGAAGAAGGTAGGCACACAGAGGCGATAATCCTCGAAGCAAAAGAAATTATCAAAAGCCCGGGTATTCCCGACACTGCTCCTATTATTCGACAGGCTGTTGCCAAAGAGATAGGTATCGTTTCGGAAATAGAGTTCGCCGGACGTTACACCGATGCATTTATGGTGTGCATCACGGGTAGTAATGGCAAGACAACAACAACCATGTGGTTGTATCACACGCTCTGTAAGGCCGGTTTGGATGTAGGTTTGGCAGGCAATGTCGGTTTTAGTCTGGCCAGACAGGTCGCTTACGATCCTCATCCTTATTATGTAATAGAGTTGAGCAGTTTTCAACTGGACAACATGTACGACTTCAGGGCTAATGTGGCCATTCTGCTCAATATTACACCGGATCATTTAGATCGATACGATCACCGATTCGAGCTTTATGCAGAAGCGAAAATGAGAATCACTCGGAATCAGCAACCCGAGGATTGCTTCATCTACTGGGAGGATGATCCTTTTATCAGCCGATGGGTAGCCGAACATCCTCCTGTAGCCCGTCTTCTACCGTTCGCAATGGAAGCTCGAACGGATAATACAACTGCTTGGATCAATGAAAAGAACGAATTGGTTGTCATGAATCTTAATTCACCTTTTGTTATGGATGAGGAACTTTTAGCTCTGTCCGGCATGCACAACAGGCACAATGCTATGGCAACTGCCATTGCTGCCAAAGCTATGGATATTAAGAATGAGGCTATTCGAGAAGCCTTGCAGGATTTCAAGAATGTACCGCATCGACTGGAAAAGATTGCTCGCGTAAAGGGTGTCGATTATATCAATGACTCCAAAGCTACGAACGTAAATTCTACCTGGTATGCTCTAGAGAGCATGAAAACTAGAGTAATACTCATTCTCGGGGGGACAGACAAAGGCAATGACTATACAGATATAGAGAATCTGGTATTGTCTAAAGTCGATGGACTGATCTTTTTGGGCATAGATAATGAGAAACTCCACAAATTCTTCGATGGCAAGATCTCGCGGATTGCAGATGCATGCTCGATGCATGAAGCTGTTTCTTTAGCATACAAGATGGCATCCAAAGGTGATACGGTACTCCTTTCTCCAGCTTGTGCCAGTTTCGATCTTTTCCAAAACTACGAAGATCGTGGCGATCAGTTTCGGAAAGAGGTATTAAATCTA","5.40","-11.31","50568","MDRLKYDIVVLGAGESGVGAALLAQAKGLHVFVSDYGKIAPKYKEELNRYAIPYEEGRHTEAIILEAKEIIKSPGIPDTAPIIRQAVAKEIGIVSEIEFAGRYTDAFMVCITGSNGKTTTTMWLYHTLCKAGLDVGLAGNVGFSLARQVAYDPHPYYVIELSSFQLDNMYDFRANVAILLNITPDHLDRYDHRFELYAEAKMRITRNQQPEDCFIYWEDDPFISRWVAEHPPVARLLPFAMEARTDNTTAWINEKNELVVMNLNSPFVMDEELLALSGMHNRHNAMATAIAAKAMDIKNEAIREALQDFKNVPHRLEKIARVKGVDYINDSKATNVNSTWYALESMKTRVILILGGTDKGNDYTDIENLVLSKVDGLIFLGIDNEKLHKFFDGKISRIADACSMHEAVSLAYKMASKGDTVLLSPACASFDLFQNYEDRGDQFRKEVLNL","634621 635970","TIGR ID: PG0578","N-acetylymuramoyl-L-alanine-D-glutamate ligase","Cytoplasm","Numerous significant hits in gapped BLAST to UDP-N-acetylmuramoylalanine--D-glutamate ligase protein; e.g. residues 5-443 are 33% similar to (Z99111) UDP-N-acetylmuramoylalanine D-glutamate ligase of Bacillus subtilis, residues 8-443 are 33% similar to (AP001515) UDP-N-acetylmuramoylalanine-D-glutamate ligase of Bacillus halodurans, residues 8-443 are 31% similar to (AE002398) UDP-N-acetylmuramoylalanine--D-glutamate ligase of Neisseria meningitidis MC58.This sequence is similar to BT3450.","
InterPro
IPR004101
Domain
Cytoplasmic peptidoglycan synthetases, C-terminal
PF02875\"[312-390]TMur_ligase_C
InterPro
IPR005762
Family
UDP-N-acetylmuramoylalanine-D-glutamate ligase
TIGR01087\"[7-449]TmurD
InterPro
IPR012237
Family
UDP-N-acetylmuramate-alanine ligase
PIRSF001562\"[6-450]TUDP-NAcM_Alig
InterPro
IPR013027
Domain
FAD-dependent pyridine nucleotide-disulphide oxidoreductase
PR00368\"[7-29]T\"[108-117]TFADPNR
InterPro
IPR013221
Domain
Mur ligase, middle region
PF08245\"[109-292]TMur_ligase_M
noIPR
unintegrated
unintegrated
G3DSA:3.40.1190.10\"[95-311]TG3DSA:3.40.1190.10
G3DSA:3.40.50.720\"[1-94]TG3DSA:3.40.50.720
G3DSA:3.90.190.20\"[312-450]TG3DSA:3.90.190.20
PTHR23135\"[111-450]TPTHR23135
PTHR23135:SF2\"[111-450]TPTHR23135:SF2
SSF51984\"[1-95]TSSF51984
SSF53244\"[311-450]TSSF53244
SSF53623\"[96-309]TSSF53623


","BeTs to 12 clades of COG0771COG name: UDP-N-acetylmuramoylalanine-D-glutamate ligaseFunctional Class: MThe phylogenetic pattern of COG0771 is --T--qvcebrhuj--olinxNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 5-241 are 33% similar to a (LIGASE SYNTHETASE PEPTIDOGLYCAN SYNTHESIS) protein domain (PD001083) which is seen in MURD_BACSU.Residues 355-447 are 38% similar to a (LIGASE) protein domain (PD039274) which is seen in O67852_AQUAE.Residues 273-347 are 41% similar to a (LIGASE SYNTHETASE PEPTIDOGLYCAN SYNTHESIS CELL ENZYME) protein domain (PD001216) which is seen in MURD_SYNY3.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Mar 22 15:16:09 MST 2000","Mon Dec 22 11:08:40 2003","Tue Jan 2 14:17:24 2001","","Tue May 22 15:17:38 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue May 22 15:17:38 MDT 2001","-46% similar to PDB:1E0D UDP-N-ACETYLMURAMOYL-L-ALANINE:D-GLUTAMATE LIGASE (E_value = 8.5E_43);-46% similar to PDB:1EEH UDP-N-ACETYLMURAMOYL-L-ALANINE:D-GLUTAMATE LIGASE (E_value = 8.5E_43);-46% similar to PDB:1UAG UDP-N-ACETYLMURAMOYL-L-ALANINE:D-GLUTAMATE LIGASE (E_value = 8.5E_43);-46% similar to PDB:2UAG UDP-N-ACETYLMURAMOYL-L-ALANINE:D-GLUTAMATE LIGASE (E_value = 8.5E_43);-46% similar to PDB:3UAG UDP-N-ACETYLMURAMOYL-L-ALANINE:D-GLUTAMATE LIGASE (E_value = 8.5E_43);","","","Residues 43 to 303 (E-value = 7.8e-32) place PG0520 in the Mur_ligase family which is described as Mur ligase family, catalytic domain (PF01225)Residues 312 to 389 (E-value = 3.7e-08) place PG0520 in the Mur_ligase_C family which is described as Mur ligase family, glutamate ligase domain (PF02875)","Mon Dec 22 11:08:40 2003","34540387","","","","","","1","","","PG0578" "PG0521","635985","637238","1254","ATGGCTTGGAAAAAATTGTTTCAAGGAGATAGGACTCTTTGGGTCATCTTCTTCTTTTTTGTCGTCATCTCTTTGGTCGAAGTCTATAGTGCTTCCAGTACTTTGGCATATCAGGGACGGATGATGTCTCCTATACTGAAGCATACGGCTTTTATTGTCATGTCCATCGTAACGGTAGTGGTAGTATCCCGATTCAACTTAGGTACACTAAAGTTTATGGGAGGAGGGCTTTATATCTTATCCTTCATACTGTTGATCATCGCGTTTTTCAATGGCACGAGTATAAATGGTGCTTCACGTTGGATTCCTTTACCTTTCGGACTCACTTTCCAGCCGTCTGAGCTGATGAAGATAGCTTTGGTGATGGTGGCTGCAATTATCTATACATTATTGGGACATTTGTCCGCAAAGAAAAGATTTATCTGGTTTTCGATACTTGTGGCAATCCCGATCCTCATCATTGCAAAAGACAATCTGTCCACTGCCATCCTCATTGCGGTGTTCTTTTTCTTTATTTCGTGGATCGGAGGTGCTCCCGGCAAGAATCTTTTCTGGCTGTTGATCGCAGGTTTATTCTTCGTCATTCTGGCATATATCCTGTTGCTCACCTTACCTCCACAAACGCTGAGTAAGCTGTCAAATCGTGCTCCAACATGGAAAAATCGTGTAGTAAGTGATCCTGCATTGAAAGATCTGAGTCCTGAGCAGCGAGACTCGATGATGTACGTCATTACGGATGACAACTTTCAGGAATCGCACGCTAAAATAGCTATCGCTCGTGGAGGACTTTTCGGTGTGATGCCCGGGAACAGTATCGAAAGGGACATTTTACCACAGGCATTCTCAGATTACATCTATGCCATCATCATCGAAGAGATGGGATTCATCGTCGGAGGGATATTGATCCCGCTGGCTTATTTTGTCCTGTTCTTCCGATTGGCACAATTAGCTCAAAGGACAGCAAGTCGCTTCGAAGGAATGCTTTTGATGGGATTCGGATTATTATACCTGTTACAGGCTATGTTCAATTTCATTGTCGCCTCCGGATTTATCGTAACGGGACAAACTCTTCCTCTGATCAGCAAGGGAGGAACATCATATCTGATCACAAGTCTGGCCTTCGGAATTATGATGAGTATCTCGCGACGAATAGCCTTGAACAAAGAGAACGGAGAAGAGGCAGCCGAAGCAATGACCATAGAGTCTGAAGTATCCGACAACGATGAACTACAAGAAATAAATATATTGGACGCA","9.50","2.73","46427","MAWKKLFQGDRTLWVIFFFFVVISLVEVYSASSTLAYQGRMMSPILKHTAFIVMSIVTVVVVSRFNLGTLKFMGGGLYILSFILLIIAFFNGTSINGASRWIPLPFGLTFQPSELMKIALVMVAAIIYTLLGHLSAKKRFIWFSILVAIPILIIAKDNLSTAILIAVFFFFISWIGGAPGKNLFWLLIAGLFFVILAYILLLTLPPQTLSKLSNRAPTWKNRVVSDPALKDLSPEQRDSMMYVITDDNFQESHAKIAIARGGLFGVMPGNSIERDILPQAFSDYIYAIIIEEMGFIVGGILIPLAYFVLFFRLAQLAQRTASRFEGMLLMGFGLLYLLQAMFNFIVASGFIVTGQTLPLISKGGTSYLITSLAFGIMMSISRRIALNKENGEEAAEAMTIESEVSDNDELQEINILDA","635985 637238","Numerous significant hits in gapped BLAST all starting around amino acid 92 with two significant hits that fit most of the sequence.TIGR ID: PG0579","cell division protein (ftsW)","Inner membrane, Cytoplasm","Numerous significant hits in gapped BLAST to FtsW protein; e.g. residues 92-384 are 29% similar to (AF117609) FtsWEF of Enterococcus faecium, residues 92-403 are 27% similar to (AE004310) cell division protein FtsW of Vibrio cholerae, residues 10-380 are 22% similar to (AB052554) FtsW of Shewanella violacea.","
InterPro
IPR001182
Family
Cell cycle protein
PF01098\"[10-386]TFTSW_RODA_SPOVE


","BeTs to 11 clades of COG0772COG name: Bacterial cell division membrane protein FtsW/MrdB/SpoVEFunctional Class: DThe phylogenetic pattern of COG0772 is -----QVcEBRHUJ--OLINXNumber of proteins in this genome belonging to this COG is 2","***** IPB001182 (Cell cycle proteins) with a combined E-value of 7.8e-27. IPB001182A 97-118 IPB001182B 239-269 IPB001182C 276-297 IPB001182D 341-377","Residues 92-380 are 28% similar to a (PROTEIN CELL SHAPE TRANSMEMBRANE) protein domain (PD003242) which is seen in FTSW_ECOLI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Tue Jan 2 16:47:06 2001","Wed Mar 22 11:54:51 MST 2000","Tue Jan 2 16:30:18 2001","Tue Jan 2 16:30:18 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 249-366 are 28% similar to PG1223.","Tue Jan 2 16:30:18 2001","","No significant hits to the PDB database (E-value < E-10).","","","Residues 10 to 386 (E-value = 4.4e-41) place PG0521 in the FTSW_RODA_SPOVE family which is described as Cell cycle protein (PF01098)","","34540388","","","","","","1","","","PG0579" "PG0522","637238","638374","1137","ATGAATAATGAAGAATCAAACGCCAAACTGCGTTTTATCATAAGTGGGGGAGGAACAGGCGGACATATTTTTCCGGCTATTTCCATCGCTGATGCCCTACGTCGCCGCTATCCTGAATGTGAAATCCTTTTTGTGGGTGCTGAGGGACGGATGGAAATGGAGCGTGTACCCCGATCCGGCTACGAGATCGTAGGTCTACCCATCAAAGGGTTAGACAGAAAGCATTTGTTGTCGAATTACAAGGTAGCCATTGCTGTTATCCGAAGCATGAGGCTGGCTAATAAGACCATAAGGAATTTTCGTCCTGATATGGTAATCGGTGTAGGAGGCTATGCCAGTGGCCCAACCTTACGCAGAGCACATTCCCTCGGGATCCCCACCCTCATTCAAGAGCAAAACAGCTATGCCGGTGTAACGAATAAACTGCTGAGCCGAGGAGCGCATAAAATCTGCGTGGCTTATCCCGAAATGGATAAATTCTTCTCTCCTGAAAAGATCGTTTTTACCGGCAATCCGATTCGCCCTGAAATAGAATTCGGCCACCCCAGCCGCTCGGAGTCTCTTCGCTTTTTCGGCTTCGAGCAGTCCGAATCGCCTGTCGTCTTGGTGGTCGGAGGTAGCTTGGGTGCCCTGACTATTAACAAGAGTATCGCCGACAAGCTCGGCAAATGGGCAGAAAGCGGTGTACACCTTATATGGCAAACGGGAAAGAACTATATTGAGACAGCCAGAAAAGCAGTAGAGAATCATCCCGGGTTGAAATGCTATGTCAATGATTTTATCACTCGAATGGATTATGCATACTGTGCAGCCGACTTGGTAGTGTCACGAGCCGGAGCTTGCTCCATTTCAGAGCTTTGCTTGCTGGGAAAACCTACGATACTGGTTCCCTCGCCCAATGTGGCAGAAGACCATCAAACAAAGAATGCTTTGGCTCTTTCTACGCGCGCTGCTGCCGTTCTGATTCCGGATACCGAGGCAATAGAACTGTTAACCGACACAGCTCTATCCTTGGTTCGCGATCCGGCAGAATTGAGTTCTCTGAGCGAACAGATACGAACGCTGGCCAAACCTCAGGCAGCTGATCGAATTGTGGATGAGATAGCAAGAATAGTGGAACACGAGAAAAGAGCGAAT","8.50","5.91","41479","MNNEESNAKLRFIISGGGTGGHIFPAISIADALRRRYPECEILFVGAEGRMEMERVPRSGYEIVGLPIKGLDRKHLLSNYKVAIAVIRSMRLANKTIRNFRPDMVIGVGGYASGPTLRRAHSLGIPTLIQEQNSYAGVTNKLLSRGAHKICVAYPEMDKFFSPEKIVFTGNPIRPEIEFGHPSRSESLRFFGFEQSESPVVLVVGGSLGALTINKSIADKLGKWAESGVHLIWQTGKNYIETARKAVENHPGLKCYVNDFITRMDYAYCAADLVVSRAGACSISELCLLGKPTILVPSPNVAEDHQTKNALALSTRAAAVLIPDTEAIELLTDTALSLVRDPAELSSLSEQIRTLAKPQAADRIVDEIARIVEHEKRAN","637238 638374","The MurG protein in E.coli is involved in cell wall formation, catalyzing the transfer of a GLCNAC moiety, the last step in peptidoglycan biosynthesis.TIGR ID: PG0580","GLCNAC transferase (UDP-N-acetylglucosamine-N-acetylmuramyl-(pentapeptide)-pyrophosphoryl-undecaprenol Nacetylglucosamine transferase)","Cytoplasm, Inner membrane","Numerous significant hits in gapped BLAST to UDP-N-acetylglucosamine-N-acetylmuramyl- pentapeptide protein; e.g. residues 10-370 are 34% similar to (AP001515) UDP-N-acetylglucosamine-N-acetylmuramyl- pentapeptide pyrophos of Bacillus halodurans, residues 10-372 are 34% similar to (U94707) undecaprenyl-PP-N-acetylmuramic acid-pentapeptide N-acetylglucosamine transferase of Enterococcus faecalis, residues 10-364 are 32% similar to (D10602) peptidoglycan synthesis enzyme of Bacillus subtilis.PG0522 is similar to CT761, a predicted GLCNAC transferase (UDP-N-acetylglucosamine -N-acetylmuramyl-(pentapeptide)-pyrophosphoryl-undecaprenol N acetylglucosamine transferase), and to BT3448.","
InterPro
IPR004276
Domain
Glycosyl transferase, family 28
PF03033\"[12-152]TGlyco_transf_28
InterPro
IPR006009
Family
N-acetylglucosaminyltransferase, MurG
TIGR01133\"[6-368]TmurG
InterPro
IPR007235
Domain
Glycosyltransferase 28, C-terminal
PF04101\"[200-364]TGlyco_tran_28_C
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.2000\"[4-198]TG3DSA:3.40.50.2000
PTHR21015\"[10-313]TPTHR21015
SSF53756\"[10-375]TSSF53756


","BeTs to 11 clades of COG0707COG name: UDP-glucuronosyltransferasesFunctional Class: MThe phylogenetic pattern of COG0707 is -----qvceBrhuj--olinxNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Mon Dec 22 11:07:04 2003","Wed Mar 22 15:57:02 MST 2000","Mon Dec 22 11:07:04 2003","Tue Jan 2 16:59:38 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Jul 23 18:14:51 2008","-52% similar to PDB:1F0K THE 1.9 ANGSTROM CRYSTAL STRUCTURE OF E. COLI MURG (E_value = 3.0E_38);-52% similar to PDB:1NLM CRYSTAL STRUCTURE OF MURG:GLCNAC COMPLEX (E_value = 3.0E_38);","","","Residues 12 to 152 (E-value = 5.7e-35) place PG0522 in the Glyco_transf_28 family which is described as Glycosyltransferase family 28 N-terminal domain (PF03033)Residues 200 to 364 (E-value = 5.3e-34) place PG0522 in the Glyco_tran_28_C family which is described as Glycosyltransferase family 28 C-terminal domain (PF04101)","Mon Dec 22 11:07:04 2003","34540389","","Ansai,T., Yamashita,Y., Awano,S., Shibata,Y., Wachi,M., Nagai,K and Takehara,T. 1995. A murC gene in Porphyromonas gingivalis 381. Microbiology 141(Pt 9): 2047-2052. PubMed: 7496515.","Pucci,M.J., Thanassi,J.A., Discotto,L.F., Kessler,R.E. and Dougherty,T.J. 1997. Identification and characterization of cell wall-cell division gene clusters in pathogenic gram-positive cocci. J. Bacteriol. 179(17): 5632-5635. PubMed: 9287029.Bupp,K. and van Heijenoort,J. 1993. The final step of peptidoglycan subunit assembly in Escherichia coli occurs in the cytoplasm. J. Bacteriol. 175(6): 1841-1843. PubMed: 8449890. Miyao,A., Yoshimura,A., Sato,T., Yamamoto,T., Theeragool,G. and Kobayashi,Y. 1992. Sequence of the Bacillus subtilis homolog of the Escherichia coli cell-division gene murG. Gene 118 (1), 147-148. PubMed: 1387377.","Wed Apr 5 14:35:53 MDT 2000","Wed Apr 5 14:42:37 MDT 2000","1","","","PG0580" "PG0523","638377","639744","1368","ATGAAAAGGGTCTATTTCATTGGGATAGGAGGGATTGGTATGAGTGCTATTGCTCGCTACTTCCATGCAAAGGGATTTAATGTGTGTGGGTATGATCTGACTCCGAGTCCCATTACCGATCAATTGATCAAAGAGGGAATTGAGGTTCATTTCAGTGATGACCTGAATATGATCCCGAAAGCTTTTTTTTCTCCCACCGATTCGTTGATCGTTTACACCCCTGCTGTGCCGGCCGACCACTCGGAATTGACCTACTTCAGATCCAATGGTTATCGCGTGGTGAAGCGAGCAGAAGTTCTCGGCGAGATAACTCTGATGGAACGTGCACTCTGTGTCGCCGGAACACATGGCAAGACTACGACCTCTACTTTGCTGGCACATTTGCTCAAACAGAGCCATGTGGACTGCAATGCGTTTCTGGGAGGAATTTCCAACAATTATCAATCGAATCTGTTGCTATCGGACAAAAGTGATTTAGTAGTCGTCGAAGCAGACGAATTCGATCGTTCATTCCACCATCTGAAACCTTTTATGGCTATTATCACATCTGCCGATCCCGATCATATGGATATATACGGCACGGCAGAGAATTATCGCGACAGCTTCGAACATTTCACCTCTTTGATTCAGTCTGGCGGAGCCCTGGTGCTTAAGTACGGTGCACCGGTCAATCCTCGACTGGGAAGCGATGTCAGCTTGTTTACATATTCGTCTGACGATCAGCAGGCTGACTATTTCGCCTCCGACATTATGATCAGGGATGGTCGCCTTTTTTTTACTTGGCATTATCCGGGTGGACAACTGGAAGGGGTAGAACTCGGTGTACCTGTACGCATCAACGTAGAGAACGCTGTAGCCGCCATGGCTATTGCACATCTTAACGGCGTCACCGTGGAAGAGCTTCGAAGCGGTATCGCCTCTTTCAAAGGTTCACACCGCCGCTTCGAAAAGGTCTTGGATACAGAGCGCGTAGTCCTGATCGATGATTATGCGCACCATCCGGTGGAATTGGATGCAGCTATTCACTCTGTACGTGAAATCTATTCGGGAAAACATATCATGGGGATCTTTCAACCCCATCTGTATAGTCGTACGGCAGACTTTTATCAGGATTTTGCCAGAAGCCTTTCCATGTTGGATGAGGTGGTTTTATTGGACATTTATCCGGCACGAGAACTCCCTTTGCCAGGTGTGACCAGTCGTCTGATATTGGATTTGATCGAGAATCCCAATAAAACGCTGGTGAGCAAAAACGATCTGCTCGATTATTTACACGGCAACGAGATACCCGATGTCGTATTGATACTCGGAGCCGGCGATATCGATCGTTTAGTGATTCCTGTCAAACAATATCTCCAAACTTTATGC","5.40","-15.59","50733","MKRVYFIGIGGIGMSAIARYFHAKGFNVCGYDLTPSPITDQLIKEGIEVHFSDDLNMIPKAFFSPTDSLIVYTPAVPADHSELTYFRSNGYRVVKRAEVLGEITLMERALCVAGTHGKTTTSTLLAHLLKQSHVDCNAFLGGISNNYQSNLLLSDKSDLVVVEADEFDRSFHHLKPFMAIITSADPDHMDIYGTAENYRDSFEHFTSLIQSGGALVLKYGAPVNPRLGSDVSLFTYSSDDQQADYFASDIMIRDGRLFFTWHYPGGQLEGVELGVPVRINVENAVAAMAIAHLNGVTVEELRSGIASFKGSHRRFEKVLDTERVVLIDDYAHHPVELDAAIHSVREIYSGKHIMGIFQPHLYSRTADFYQDFARSLSMLDEVVLLDIYPARELPLPGVTSRLILDLIENPNKTLVSKNDLLDYLHGNEIPDVVLILGAGDIDRLVIPVKQYLQTLC","638374 639744","From GenBank (gi: 3915767): Believed to be involved in cell wall formation (by similarity), probable cytoplasmic location. Catalytic activity: ATP + UDP-N-acetylmuramoyl + L-alanine = ADP + orthophosphate + UDP-N-acetylmuramoyl-L-alanine.TIGR ID: PG0581","UDP-N-acetylmuramate--alanine ligase","Cytoplasm","PG0523 is essentially identical to a previously sequenced P.gingivalis protein in GenBank, BAA24358.Numerous significant hits in gapped BLAST to UDP-N-acetylmuramate--alanine ligase protein, e.g; residues 1-444 are 32% similar to (U67892) UDP-MurNAc:L-alanine ligase of Escherichia coli, residues 1-444 are 33% similar to (U32794) UDP-N-acetylmuramate--alanine ligase of Haemophilus influenzae Rd, residues 1-444 are 32% similar to (X55034) UDP-N-acetylmuramate--alanine ligase of Escherichia coli.This protein is similar to CT762, a predicted MUR-NAc-L-alanine and D-alanine-D-alanine ligase, and to BT3447.","
InterPro
IPR000713
Domain
Cytoplasmic peptidoglycan synthetase, N-terminal
PF01225\"[3-108]TMur_ligase
InterPro
IPR004101
Domain
Cytoplasmic peptidoglycan synthetases, C-terminal
PF02875\"[311-398]TMur_ligase_C
InterPro
IPR005758
Family
UDP-N-acetylmuramate--alanine ligase
TIGR01082\"[3-449]TmurC
InterPro
IPR012237
Family
UDP-N-acetylmuramate-alanine ligase
PIRSF001562\"[2-449]TUDP-NAcM_Alig
InterPro
IPR013221
Domain
Mur ligase, middle region
PF08245\"[110-291]TMur_ligase_M
noIPR
unintegrated
unintegrated
G3DSA:3.40.1190.10\"[96-310]TG3DSA:3.40.1190.10
G3DSA:3.40.50.720\"[2-95]TG3DSA:3.40.50.720
G3DSA:3.90.190.20\"[310-452]TG3DSA:3.90.190.20
PTHR23135\"[112-445]TPTHR23135
PTHR23135:SF5\"[112-445]TPTHR23135:SF5
SSF51984\"[1-95]TSSF51984
SSF53244\"[310-452]TSSF53244
SSF53623\"[95-309]TSSF53623


","BeTs to 11 clades of COG0773COG name: UDP-N-acetylmuramate-alanine ligaseFunctional Class: MThe phylogenetic pattern of COG0773 is -----qvcEbrHuj--olinxNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 14-245 are 94% similar to a (LIGASE SYNTHETASE PEPTIDOGLYCAN SYNTHESIS) protein domain (PD001083) which is seen in MURC_PORGI.Residues 407-433 are identical to a (UDP-N-ACETYLMURAMATE--ALANINE LIGASE EC 6.3.2.8 UDP-N-) protein domain (PD122283) which is seen in MURC_PORGI.Residues 247-406 are 97% similar to a (LIGASE SYNTHETASE PEPTIDOGLYCAN SYNTHESIS CELL ENZYME) protein domain (PD001216) which is seen in MURC_PORGI.","","Thu Jun 14 11:18:38 MDT 2001","","Thu Jun 14 11:18:38 MDT 2001","Thu Jun 14 11:18:38 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:18:38 MDT 2001","Thu Jun 14 11:18:38 MDT 2001","","Wed Jun 20 09:38:52 MDT 2001","Wed Mar 29 14:44:09 MST 2000","Mon Dec 22 11:05:28 2003","Tue Jan 2 18:03:28 2001","","Wed Jun 20 09:38:52 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue May 22 15:19:16 MDT 2001","-51% similar to PDB:1GQQ MURC- CRYSTAL STRUCTURE OF THE APO-ENZYME FROM HAEMOPHILUS INFLUENZAE (E_value = 3.3E_58);-51% similar to PDB:1GQY MURC- CRYSTAL STRUCTURE OF THE ENZYME FROM HAEMOPHILUS INFLUENZAE COMPLEXED WITH AMPPCP (E_value = 3.3E_58);-51% similar to PDB:1P31 Crystal Structure of UDP-N-acetylmuramic acid:L-alanine Ligase (MurC) from Haemophilus influenzae (E_value = 3.3E_58);-51% similar to PDB:1P3D Crystal Structure of UDP-N-acetylmuramic acid:L-alanine ligase (MurC) in Complex with UMA and ANP. (E_value = 3.3E_58);-51% similar to PDB:2F00 Escherichia coli MurC (E_value = 3.3E_58);","","","Residues 40 to 302 (E-value = 2.7e-73) place PG0523 in the Mur_ligase family which is described as Mur ligase family, catalytic domain (PF01225)Residues 311 to 400 (E-value = 5.4e-30) place PG0523 in the Mur_ligase_C family which is described as Mur ligase family, glutamate ligase domain (PF02875)","Mon Dec 22 11:05:28 2003","34540390","","Ansai,T., Yamashita,Y., Awano,S., Shibata,Y., Wachi,M., Nagai,K. and Takehara,T. 1995. A murC gene in Porphyromonas gingivalis 381. Microbiology 141 (Pt 9): 2047-2052. PubMed: 7496515.","Ikeda,M., Wachi,M., Jung,H.K., Ishino,F. and Matsuhashi,M. 1990. Nucleotide sequence involving murG and murC in the mra gene cluster region of Escherichia coli. Nucleic Acids Res. 18 (13): 4014. PubMed: 2197603.","Wed Apr 5 14:47:45 MDT 2000","Wed Apr 5 14:47:45 MDT 2000","1","","","PG0581" "PG0524","639741","640514","774","ATGCTAAAGAAGGTTCTTTATATACTGGGGTTCTTTCTTGTACTGGCCTATCTTGTTGCAGCCATAGTTTTCTTTTCGGACTATTCCGATAGCACTCGCTGCTCAGGTTTGGAAGTTCGAGTCGAGGGTAAGACGAAACATGCATTCATGCAAAAGACCGATGTGGAGCGAGACTTGAAGCGTCTGGGTTTCACCCCCTATGGCAAGCTGCTCGACTCTATCGATCTTCACAGAATGGAAAGAAACCTTCGTGCTAATTCCCTTTTCCGCGGAGCGGAATTGTATGCCTCTCCATCCGGCCAACTGTATCTGACAGTGGAACAAAAAGATCCGCTCTTTATGGTAGTACGATCCGATACCTCTTTCTATGTTTCTACCGACAGGAGCGTGATCGTTCCCAACTTGCAGTATGCTGCCCCCGTACTGATGGCCTCAGGGGATATATCTCTGTCCTTAGCTACCGGCCCTCTCTTCGACCTCATTGCATTTATCAGCGATGATCCATTCTGGTCAAACTTTTTCGCTCAGGTTTATGTGCCGGATAATGGTCAGATCATATTAGTTCCCCGTCTGGGCAAAACTGAAATTATCATAGGCAGTACACCTAATTGGGCAGAAAAATTGTCGAACCTACGCCTTTTTATGGACAAAGCCATTCCAAAATATGGATGGGACACGTTTAAAACATTAAATTTGGAGTTCAAAGATCAGGTGGTTGCCACTCCTTTTCCCTCTTCCCCTCTTTATCCTGCAGTTGCGCGTGCGCAGGTGCAA","8.40","1.43","29046","MLKKVLYILGFFLVLAYLVAAIVFFSDYSDSTRCSGLEVRVEGKTKHAFMQKTDVERDLKRLGFTPYGKLLDSIDLHRMERNLRANSLFRGAELYASPSGQLYLTVEQKDPLFMVVRSDTSFYVSTDRSVIVPNLQYAAPVLMASGDISLSLATGPLFDLIAFISDDPFWSNFFAQVYVPDNGQIILVPRLGKTEIIIGSTPNWAEKLSNLRLFMDKAIPKYGWDTFKTLNLEFKDQVVATPFPSSPLYPAVARAQVQ","639741 640514","TIGR ID: PG0582","cell division protein","Inner membrane, Cytoplasm","One significant hit in gapped BLAST. Residues 127-239 are 28% (Evalue:3e-08) similar to (AJ249201) cell division protein of Prevotella albensis.","
noIPR
unintegrated
unintegrated
signalp\"[1-21]?signal-peptide
tmhmm\"[5-25]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 1-258 are 98% similar to a (FTSQ) protein domain (PD126190) which is seen in O07826_PORGI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Jan 3 18:11:41 2001","Wed Jan 3 18:11:41 2001","Wed Jan 3 18:11:41 2001","","Fri Apr 20 13:20:52 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Apr 20 13:20:52 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Fri Apr 20 13:20:52 MDT 2001","34540391","","","","","","1","","","PG0582" "PG0525","640566","642002","1437","ATGAGCAGAATGAATACAATTTATGCAGTCATTGACTTGGGCAGTTGGTATATCCGAGGTATGGTGGCTCGCAAAATGGAGGATGGACGGGTTTCTCCGATTTCTTTTTATGAGGAGCCTGCCAATAATTGCATCCGTCATGGATGCGTACACAATATCGATGAGGCAGCAGCCATTATTCGACGCATCGTCAACCAATTGAACGAGAATCTTGAGGACAATACCCATATTACTTCGCTATATGTGGGCGTGGGAGGACAGTCGATCGCTTCTCAGGAATTCATCGTCCGCAAAGCCATGGTGCCCGAGGGAGAAGTCATTCGTACAGAACATATCGAATCCCTCTGGGCTGAAATGCGAGGAGCTTCTTTCCCCGATAAGGAAGTTTTGGATGTGACTGATCCGCTCTTTTATGTGGACGGAAAACAGGAGATACAGGCCAAGGGAGTATTTTGTCATGAGCTTGAAGCCCGCTTCCAATTGATCACTGCTCGCCGTTCGGTAAAGCAGAATATCCGCATCGCCATAGAAGAACGTCTGGGATTGCGCTTGACAGGCATCCTCGTCACACCGCTTTGCGAAGCACAGGTATTGCTCTCGGACGACGAGCTGACATTGGGATGTTGCTACGTCAATATAGGTGCCGGCTGTACATCGGTATCTATCTATAAAAACAGGCTGTTGGCCATGCTTCGCGTACTTCCGATGGGAGGTTATAACGTCACACGCGATTTGACCAGCCTGCGACTGACAGAACAGGAGGCGGAGAACATGAAGCTCAACCACGTGTCGATGATCAACGACAATAAGTCCAACGGATCATTCCGCATGACCTTTGCCGACAAATTTTCCGAAAGAGAGTTCCGCTCCTCCGAAGTCAATCGCCTGGCCAAGGCTCGCATGGACGAAATCACAGCCAACTACCTCAACATCCTACGCCTCTCAGGCCTCCTTGAAGATATCGGCGCCGGCATTATTCTCAATGGAGGTGGCACCAAGATCAACAACTATATGGCTGCCATGAAGAAGATACTCGGAGAGGTTACTCCGGCCAAAATTCGAATGGATCGCATCGACACGGATAATGCTATTTCTTTTATCGAAGAGCATATCTCTACCATCGGTTTGGCATATAAGGCTACCCAACCCTGCACGGATTATATCACGACCAATTTGGGTGAACTGGTAAGTCAGATAGAGACCAAAGAAGAAATACCGGCCAACGATACCGTACAAGATCTATTCGCACAAGGCCGACAAACGGAGAGAAAGGAAAACGAACAAAGGGACAATACTGACCGACAACGTGAAGATACCCCCAAACAGACGGTCAAAAAGAAAGAAAAGACCGGGCCTTCATTTGGAGATAAGCTCAAGGGAGCTTTCATCAAGTTTGGCTCCTTGTTCGACGAAGACACTAATCAAGATAATAACAGA","5.50","-7.64","53899","MSRMNTIYAVIDLGSWYIRGMVARKMEDGRVSPISFYEEPANNCIRHGCVHNIDEAAAIIRRIVNQLNENLEDNTHITSLYVGVGGQSIASQEFIVRKAMVPEGEVIRTEHIESLWAEMRGASFPDKEVLDVTDPLFYVDGKQEIQAKGVFCHELEARFQLITARRSVKQNIRIAIEERLGLRLTGILVTPLCEAQVLLSDDELTLGCCYVNIGAGCTSVSIYKNRLLAMLRVLPMGGYNVTRDLTSLRLTEQEAENMKLNHVSMINDNKSNGSFRMTFADKFSEREFRSSEVNRLAKARMDEITANYLNILRLSGLLEDIGAGIILNGGGTKINNYMAAMKKILGEVTPAKIRMDRIDTDNAISFIEEHISTIGLAYKATQPCTDYITTNLGELVSQIETKEEIPANDTVQDLFAQGRQTERKENEQRDNTDRQREDTPKQTVKKKEKTGPSFGDKLKGAFIKFGSLFDEDTNQDNNR","640566 642002","TIGR ID: PG0583","cell division protein","Cytoplasm","Numerous significant hits in gapped BLAST to cell division protein, e.g.; residues 11-449 are 28% similar to (AJ249201) cell division protein of Prevotella albensis, residues 5-345 are 28% similar to (Z99111) cell-division protein of Bacillus subtilis, residues 1-344 are 26% similar to (AE002398) cell division protein of Neisseria meningitidis MC58.","
InterPro
IPR003494
Family
Cell division protein FtsA
PF02491\"[8-198]T\"[208-376]TFtsA
TIGR01174\"[7-379]TftsA
noIPR
unintegrated
unintegrated
SSF53067\"[5-199]T\"[200-379]TSSF53067


","BeTs to 8 clades of COG0849COG name: Predicted ATPases of the HSP70 class involved in cell divisionFunctional Class: DThe phylogenetic pattern of COG0849 is -----qVceb-huj--ol--xNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 335-456 are 95% similar to a (CELL DIVISION PROTEIN FTSA) protein domain (PD141832) which is seen in FTSA_PORGI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Jan 3 18:15:54 2001","Wed Jan 3 18:15:54 2001","Mon Apr 30 15:59:50 MDT 2001","","Mon Apr 30 15:59:50 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Apr 30 15:59:50 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 8 to 199 (E-value = 5.4e-39) place PG0525 in the FtsA family which is described as Cell division protein FtsA (PF02491)Residues 201 to 385 (E-value = 1.2e-42) place PG0525 in the FtsA family which is described as Cell division protein FtsA (PF02491)","Mon Apr 30 15:59:50 MDT 2001","34540392","","","","","","1","","","PG0583" "PG0526","642008","643378","1371","ATGGAAGACGAATTGCTGAACTTTAATTATACGGATTCCGGTTTGCCCGTTATTATCAAGGTAATCGGAGTCGGCGGTGGTGGTGGCAATGCTGTCAAAAACATGTACCACGGCAAGGTGCGGGATGTATCGTTCCTCCTGTGTAATACCGATGTGCAGGCTCTCGACCGAAGCGAGGTACCTGATCGGCTGGTACTCGGCCGTGAGGTGACCAACGGTCTGGGTGCCGGTAGCCGTCCGGAAGTGGCACGACGAGCTGCAGAGGCCAGCGAAGCCGACATACGCAAGATATTGGATGATGGCCATACCCGTATGGTCTTCGTAACGGCCGGTATGGGCGGCGGAACGGGTACCGGTGCGGCCCCTGTCATCGGTCGGATAGCACGTGAACTCAATATCCTCACTGTCGGCATCGTTACCATCCCATTCGTTTTCGAAGGCAAGCGCAAGATTCTGCAGGCACTCGAAGGGGTGGAGGAAATGCGCAAAAACGTAGATGCCTTGCTCGTGGTCAATAATGAACGGCTCCGCATCATATACAAAGATCTTAAGCTCGACAATGCTTTTGCCAAGGCAGACGAGACACTGACCAACGCAGCCAACGGCATTGCCGAAATGATCATGAAAGAAGGGACGATCAACCTCGACTTTGCCGATGTGCACACGACACTCAAAGACGGTGGTATAGCCATCATCAGTACCGGCTATGGTGAAGGTCCCGACCGTATGGAGCAGGCCATCAATGAGGCTCTTACCTCTCCTCTGCTCAATAACAACGACATTTTCAAGGCAAGGCGTGTACTCTTCAATATCTATCAAGGCACGGAAGACCCCCTGGGTACGGACGAACTATCGGCCATCAACGAACTCACGGCCAAGATAGAAACCGGGTTCGATACCATTTGGGGTTATACCACCGATCCGGAGTTAGGCAAGAAAGTGAAGATCACCATTCTGGCTTCCGGTTTCGATCTGGACACCACACGCGAAAGCATCCGCATCGGAGACAACCTTGGCAATGTCATCAACGACCCCATCTCTTCTCGCGAGATCGAGACGCAGAATGAACGGGACAATGATCTGATCAACCGTTACTATCGCCCCGATGAACTGGAGAAAGTGAAGGTGGTGGACTTCAAACCGATCATACTTAACCTCGACGAGTTGGACAATGACGAACTGATCATGGCCCTCGAAGAGAAACCGGCCTACAGTCGCACCGGGGTACTGCTCTCTCGTATCGACAATATACGTATGCGGATAGCAGAATCGGCCGGTCGTCTGAAGAAGGATGTTGTCCGATCGGAAGAGAGCGAACGACCTGCCTTCGAAAGCGAACGTTCAAGCTCTCCGACCACCATTTCATTCAAT","4.60","-19.26","50250","MEDELLNFNYTDSGLPVIIKVIGVGGGGGNAVKNMYHGKVRDVSFLLCNTDVQALDRSEVPDRLVLGREVTNGLGAGSRPEVARRAAEASEADIRKILDDGHTRMVFVTAGMGGGTGTGAAPVIGRIARELNILTVGIVTIPFVFEGKRKILQALEGVEEMRKNVDALLVVNNERLRIIYKDLKLDNAFAKADETLTNAANGIAEMIMKEGTINLDFADVHTTLKDGGIAIISTGYGEGPDRMEQAINEALTSPLLNNNDIFKARRVLFNIYQGTEDPLGTDELSAINELTAKIETGFDTIWGYTTDPELGKKVKITILASGFDLDTTRESIRIGDNLGNVINDPISSREIETQNERDNDLINRYYRPDELEKVKVVDFKPIILNLDELDNDELIMALEEKPAYSRTGVLLSRIDNIRMRIAESAGRLKKDVVRSEESERPAFESERSSSPTTISFN","642008 643378","TIGR ID: PG0584","cell division protein","Cytoplasm, Inner membrane","Numerous significant hits in gapped BLAST to cell division protein, e.g.; residues 30-417 are 43% similar to (AJ249201) cell division protein of Prevotella albensis, residues 30-325 are 38% simlilar to (AJ239100) FtsZ protein of Acholeplasma laidlawii, residues 30-370 are 33% similar to (AE000694) cell division protein FtsZ of Aquifex aeolicus.This sequence is similar to BT3444.","
InterPro
IPR000158
Family
Cell division protein FtsZ
PR00423\"[65-83]T\"[105-125]T\"[133-154]T\"[195-217]T\"[218-239]T\"[263-281]TCELLDVISFTSZ
TIGR00065\"[1-349]TftsZ
PS01135\"[104-125]TFTSZ_2
InterPro
IPR003008
Domain
Tubulin/FtsZ, GTPase
PF00091\"[17-211]TTubulin
InterPro
IPR008280
Domain
Tubulin/FtsZ, C-terminal
PF03953\"[213-274]TTubulin_C
noIPR
unintegrated
unintegrated
G3DSA:3.30.1330.20\"[227-323]TG3DSA:3.30.1330.20
G3DSA:3.40.50.1440\"[6-226]TG3DSA:3.40.50.1440
SSF52490\"[16-214]TSSF52490
SSF55307\"[215-324]TSSF55307


","BeTs to 15 clades of COG0206COG name: Cell division GTPase FtsZFunctional Class: DThe phylogenetic pattern of COG0206 is AMtK-qvcebrhujgpol--xNumber of proteins in this genome belonging to this COG is 1","***** IPB000158 (Cell division protein FtsZ) with a combined E-value of 4.3e-100. IPB000158A 28-82 IPB000158B 102-147 IPB000158C 165-177 IPB000158D 192-243 IPB000158E 256-281","Residues 30-324 are 90% similar to a (DIVISION CELL PROTEIN FTSZ SEPTATION GTP-BINDING HOMOLOG) protein domain (PD001349) which is seen in FTSZ_PORGI.Residues 325-457 are 88% similar to a (CELL DIVISION PROTEIN FTSZ) protein domain (PD132616) which is seen in FTSZ_PORGI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Jan 3 18:20:17 2001","Mon Dec 22 11:03:27 2003","Mon Apr 30 16:00:41 MDT 2001","Mon Apr 30 16:00:41 MDT 2001","Mon Apr 30 16:00:41 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Apr 30 16:00:41 MDT 2001","-55% similar to PDB:1OFU CRYSTAL STRUCTURE OF SULA:FTSZ FROM PSEUDOMONAS AERUGINOSA (E_value = 8.6E_43);-54% similar to PDB:1FSZ CRYSTAL STRUCTURE OF THE CELL-DIVISION PROTEIN FTSZ AT 2.8A RESOLUTION (E_value = 1.2E_41);-54% similar to PDB:1W58 FTSZ GMPCPP SOAK I213 (M. JANNASCHII) (E_value = 1.2E_41);-54% similar to PDB:1W59 FTSZ DIMER, EMPTY (M. JANNASCHII) (E_value = 1.2E_41);-54% similar to PDB:1W5A FTSZ DIMER, MGGTP SOAK (M. JANNASCHII) (E_value = 1.2E_41);","","","Residues 17 to 211 (E-value = 8e-75) place PG0526 in the Tubulin family which is described as Tubulin/FtsZ family, GTPase domain (PF00091)","Mon Apr 30 16:00:41 MDT 2001","34540393","","","","","","1","","","PG0584" "PG0527","643413","643859","447","ATGGACTACTTTGAACTCATCAGCAACGATATCAAGACCGCTATGCTCGCTCGCGACAAAGTGAAGCTCGAAGCCCTTCGCGGAGTGAAGAAAGAATTTCTCGAAGCCAAGACAGCTAAAGGCAGCGATGGCACTCTGTCCGAAGATGCAGCCCTCAAGATCATGCAAAAGATGGTGAAGCAGCGCCGCGAGAGTGCTGCCATCTTTGTAGAAAACGGCAGACCCGAACTGGCCGAACCTGAGCTTGCCGAAGCCGAGGTAATCGAGGCCTACCTACCCAAACAACTCTCACGTGAGGAACTGACCCCCATCTTACAGGAAATAATCAGCCGTCTCGGCGTCACTGACAGTAAAATGATGGGCAAAGTAATGGGAGTAGCCACCAAAGAATTGGCAGGCAAAGCAGATGGCAGCCTCATCAGTACGATCGTAAAGGAATTGCTAAGC","5.20","-1.99","16381","MDYFELISNDIKTAMLARDKVKLEALRGVKKEFLEAKTAKGSDGTLSEDAALKIMQKMVKQRRESAAIFVENGRPELAEPELAEAEVIEAYLPKQLSREELTPILQEIISRLGVTDSKMMGKVMGVATKELAGKADGSLISTIVKELLS","643413 643859","TIGR ID: PG0585","conserved hypothetical protein","Cytoplasm","Numerous significant hits in gapped BLAST to conserved hypothetical protein, e.g.; residues 1-149 are 36% similar to (Z99117) similar to hypothetical proteins of Bacillus subtilis, residues 1-149 are 33% similar to (AP001511) unknown conserved protein of Bacillus halodurans, residues 1-148 are 31% similar to (AE001741) conserved hypothetical protein of Thermotoga maritima.","
InterPro
IPR003789
Domain
GatB/Yqey
PF02637\"[6-148]TGatB_Yqey
noIPR
unintegrated
unintegrated
G3DSA:1.10.10.410\"[93-149]TG3DSA:1.10.10.410
G3DSA:1.10.1510.10\"[1-92]TG3DSA:1.10.1510.10
SSF89095\"[1-149]TSSF89095


","BeTs to 4 clades of COG1610COG name: Uncharacterized protein, YqeY familyFunctional Class: SThe phylogenetic pattern of COG1610 is ----y-v--br----------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 5-109 are 34% similar to a (PROTEIN LPORFX RPSU-PHOH INTEREGENIC) protein domain (PD010870) which is seen in YQEY_BACSU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Jan 3 18:23:39 2001","Wed Jan 3 18:23:39 2001","Tue Jul 13 15:03:35 2004","","Tue Jul 13 15:03:35 2004","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Jul 13 15:03:35 2004","-54% similar to PDB:1NG6 structure of hypothetical cytosolic protein YQEY (E_value = 7.2E_20);","","","Residues 6 to 148 (E-value = 1.1e-22) place PG0527 in the GatB_Yqey family which is described as GatB/Yqey domain (PF02637)","","34540394","","","","","","1","","","PG0585" "PG0527.1","644112","644351","240","TTGGCAGCCATAAACCTGCTCATTGATCTTTCCCCGAGATACAAAGAATGGTCTCCTATGAGAGGATACTATGGTCTCCTACGAGAGGATACTATGGTCTCCTATGAGAGGATACTATGGTCTCATACGAGAGGATACTATGGTCTCCTACGAGAGGATACTATGGTCTCCTATGAGAGGATACTATGGTCTCCTATGAGAGGATACTATGGTCTCATACGAGAGGATACTATGGTCTAT","","","9678","LAAINLLIDLSPRYKEWSPMRGYYGLLREDTMVSYERILWSHTRGYYGLLREDTMVSYERILWSPMRGYYGLIREDTMVY","","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No significant hits in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Thu Jan 4 16:00:35 2001","Wed Jan 3 18:26:39 2001","Wed Jan 3 18:26:39 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","PG0527 is paralogously related to PG0564.1 and PG1887.1","Wed Jan 3 18:26:39 2001","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG0529","645335","644706","630","ATGCATGGAATAGAAGAAGGGCTTACCGAATTTATCACTTGGTGCGATTACCTCGGAACCTTTGCATTCGCCATCAGTGGTATTCGTTTGGCTGCAGCCCGACGCTTCGATTGGTTCGGAGCCTATGTGGTCGGTGTGGTTACGGCTGTTGGTGGCGGTACGGTGCGCGACATTTTGCTTAATGTCCCGCCGTTTTGGATGCTCCGGCCTTCCTACCTTTTTATCTCTATGCTCGCTCTCATCTTCACGATTGTATTTCGGAAGTATGTAGTACGACTGAATCATACGGTTTTCATTTTCGATACTGTCGGGATAGGCTTGTTCACCATAGTGGGTGTGGCTAAAACTTTCGAGTGCGGATATGCGTGGTGGCTGGCCATTGCGATGGGTACGATTACAGGGTCGTTCGGTGGTATGATTCGGGATATTCTGATCAATCAGACGCCGCTTATTTTCCGCAAGGATATATATGCCATGGCGTGCCTGATCGGAGGAGCGGTCTATGTGGGACTCATGTACACGACTCTCCCGATCGAAATCATACAGTTCATTGCTGCCTTTATTGTCGTGGCTGTGCGGTTCGTCTCGGTGAAATACCATATCAGCATCCCCACTTTCCGCGGGGCCGTA","9.40","4.56","23322","MHGIEEGLTEFITWCDYLGTFAFAISGIRLAAARRFDWFGAYVVGVVTAVGGGTVRDILLNVPPFWMLRPSYLFISMLALIFTIVFRKYVVRLNHTVFIFDTVGIGLFTIVGVAKTFECGYAWWLAIAMGTITGSFGGMIRDILINQTPLIFRKDIYAMACLIGGAVYVGLMYTTLPIEIIQFIAAFIVVAVRFVSVKYHISIPTFRGAV","645335 644706 [Shadowed by 702]","TIGR ID: PG0587","conserved hypothetical protein","Inner membrane, Cytoplasm","Numerous significant hitsin gapped BLAST to conserved hypothetical protein, e.g.; residues 12-206 are 33% similar to (AE000125) hypothetical protein of Escherichia coli K12, residues 16-206 are 30% similar to (AF198617) YadS of Aeromonas caviae, residues 9-206 are 28% similar to (AE004308) conserved hypothetical protein of Vibrio cholerae.","
InterPro
IPR005115
Domain
Protein of unknown function UPF0126
PF03458\"[12-96]T\"[97-186]TUPF0126


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 99-204 are 34% similar to a (PROTEIN INTERGENIC REGION HEML-PFS TRANSMEMBRANE) protein domain (PD011175) which is seen in YADS_ECOLI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Jan 3 18:31:48 2001","Wed Jan 3 18:31:48 2001","Wed Jan 3 18:31:48 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","Residues 12 to 96 (E-value = 7.3e-27) place PG0529 in the UPF0126 family which is described as UPF0126 domain (PF03458)Residues 97 to 186 (E-value = 6.5e-20) place PG0529 in the UPF0126 family which is described as UPF0126 domain (PF03458)","","34540395","","","","","","1","","","PG0587" "PG0530","646208","645390","819","ATGTCCACGTACCAACCGGAAGATACTCGTAAGGTAACTACACATCGCCTCATCGAGATGAAGAGCCGTGGGGAGAAAATCTCCATGCTCACAGCTTATGACTACTCAATGGCTAAGCTGGTCGATGAGGCCGGTATGGATGTCATTCTTGTAGGTGATTCGGCTTCGAACGTTATGGCCGGCAATGTCACCACCCTGCCCATCACTCTCGATCAGATGATCTACCACGGCAAGTCTGTGGTCAAGGCCGTCAAGCGTGCTCTTGTGGTCGTAGATCTTCCTTTCGGATCCTATCAGGGCAACTCCAAAGAAGCCTTGTGCTCGGCCATCCGTGTGATGAAGGAGACACATGCCGACTGTATCAAACTCGAAGGAGGAGAAGAGGTGCGCGAGTCCATTGTGCGAATCCTCTCGGCCGGTATTCCCATCATGGGACACCTCGGACTGATGCCTCAGAGCATCAATAAGTTTGGCACCTACAATGTCCGCGCCAAGGAAGAGGCCGAAGCCGAGAAGCTGCTTCAGGATGCTCACCTCTTGGAAGAACTCGGATGCTTCGCTCTCGTCCTCGAAAAAATACCGGCCGAACTGGCTACACGTGTAGCTTCGGAGCTGAGCATTCCGGTTATCGGCATCGGTGCCGGAGGTGGTGTGGACGGTCAGGTGCTGGTGATGCACGACATGCTCGGTATCACGGAGGGGTTCAGTCCCCGTTTCCTGCGCCGTTATGCCAATCTGGCCAACGAGATAGATCGGGCACTCAAGCATTATATCGCTGATGTGAAGAGTATGGACTTCCCCAATAAGGACGAGCAGTAC","5.70","-5.44","29931","MSTYQPEDTRKVTTHRLIEMKSRGEKISMLTAYDYSMAKLVDEAGMDVILVGDSASNVMAGNVTTLPITLDQMIYHGKSVVKAVKRALVVVDLPFGSYQGNSKEALCSAIRVMKETHADCIKLEGGEEVRESIVRILSAGIPIMGHLGLMPQSINKFGTYNVRAKEEAEAEKLLQDAHLLEELGCFALVLEKIPAELATRVASELSIPVIGIGAGGGVDGQVLVMHDMLGITEGFSPRFLRRYANLANEIDRALKHYIADVKSMDFPNKDEQY","646208 645390","TIGR ID: PG0588","3-methyl-2-oxobutanoate hydroxymethyltransferase","Cytoplasm","Numerous significant hits in gapped BLAST to 3-methyl-2-oxobutanoate hydroxymethyltransferase protein, e.g.; residues 8-273 are 40% similar to (X96580) 3-methyl-2-oxobutanoate hydroxymethyltransferase of Corynebacterium glutamicum, residues 6-273 are 38% similar to (AF223945) 3-methyl-2-oxobutanoate hydroxymethyltransferase of Mycobacterium sp., residues 13-273 are 38% similar to (AP001512) ketopantoate hydroxymethyltransferase of Bacillus halodurans.This sequence is similar to BT0698.","
InterPro
IPR003700
Family
Ketopantoate hydroxymethyltransferase
PTHR20881\"[1-273]TPantoate_transf
PF02548\"[10-270]TPantoate_transf
TIGR00222\"[11-273]TpanB
noIPR
unintegrated
unintegrated
G3DSA:3.20.20.60\"[9-273]TG3DSA:3.20.20.60
SSF51621\"[11-273]TSSF51621


","BeTs to 9 clades of COG0413COG name: Ketopantoate hydroxymethyltransferaseFunctional Class: HThe phylogenetic pattern of COG0413 is ---kyqvcebr-uj-------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 17-273 are 38% similar to a (3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE) protein domain (PD007676) which is seen in O67783_AQUAE.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Jan 3 18:35:42 2001","Wed Dec 3 08:56:44 2003","Mon Apr 30 16:04:59 MDT 2001","","Mon Apr 30 16:04:59 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Apr 30 16:04:59 MDT 2001","-56% similar to PDB:1OY0 The crystal Structure of the First Enzyme of Pantothenate Biosynthetic Pathway, Ketopantoate Hydroxymethyltransferase from Mycobacterium Tuberculosis Shows a Decameric Assembly and Terminal Helix-Swapping (E_value = 1.7E_47);-55% similar to PDB:1O66 Crystal structure of 3-methyl-2-oxobutanoate hydroxymethyltransferase (E_value = 1.8E_39);-55% similar to PDB:1O68 Crystal structure of 3-methyl-2-oxobutanoate hydroxymethyltransferase (E_value = 1.8E_39);-53% similar to PDB:1M3U Crystal Structure of Ketopantoate Hydroxymethyltransferase complexed the Product Ketopantoate (E_value = 1.9E_38);","","","Residues 10 to 270 (E-value = 9.7e-141) place PG0530 in the Pantoate_transf family which is described as Ketopantoate hydroxymethyltransferase (PF02548)","Mon Apr 30 16:04:59 MDT 2001","34540396","","","","","","1","","","PG0588" "PG0531","647799","646282","1518","ATGTTGGAAAAGCTCATTATTCTGGATTTCGGTTCTCAAACCACACAGCTCATCGCCAGACGAATTCGCGAGCTGAACACCTACTGCGAGGTTTATCCCTACAACAAACTGCCGGAAGACCTCTCAGGAGTGCGAGGCATCATCCTGTCGGGGAGCCCTTATTCCGTGTATGACAGCAAGGCCTTTCGTATCGAACTGAGCGAATTACGGGGCAAGTTGCCTCTCTTGGGTATCTGCTACGGTGCACAGAGCCTTGTCCATCAAGCCGGTGGCAAAGTAGAGCCGTGCGACAGTCGCGAATACGGGCGAACACATCTGACCCTCCGGCAGCCTGATGATGCACTGCTGACAGGCCTGCAATCCGGCACTACGGTATGGATGTCCCACGGCGATACCATTACGTCATTGCCTGAAGGATTCGAGGTCATAGCAGGTACCGAGGATGTACCCAATGCAGCATTTCGCATCCGAGGGGAGAAAACGTGGGGCGTACAGTTCCATCCCGAGATCTACCACTCGGAAGAAGGTACCAAACTGCTTGGCAACTTCCTCGATATATGCGGTATGAAGCGTGATTGGACTCCGGCTTCTTTCATCGAAGCGACTGTGCAGGAACTTCGCGAACGCTTAGGTGATGACAAGGTGATCCTGGCACTCTCCGGAGGTGTGGACAGTTCGGTGGTGGCGGTGCTTCTGAACAAAGCTATCGGCCGCAACCTGACTTGTATATTCGTCGATCACGGCTTGCTGCGTAAGGGCGAATTCGAGCGCGTACTTCAGGACTACGAGCACTTGGGTCTCAATGTAATCGGGGTGAATGCAAAAGAAAAATTCTTCGCAGCCCTTAGCGGCGTTACCGATCCCGAGCAAAAACGGAAGATTATCGGTCGCGGCTTCATCGAAGTGTTCGACGAAGAAGCCCGGAAGCTGAAAGATATCAAATGGCTTGGTCAGGGCACGATCTACCCCGATGTCATTGAAAGTCTGAGTATCACCGGTATGGTGATCAAGAGTCACCACAATGTGGGAGGACTGCCCGAGCGGATGAATCTCCGCCTCGTGGAACCGCTCCGTATGCTCTTCAAGGACGAAGTCCGTCGCGTGGGACTCGAGCTCGGCATGATGCCGCACCTGATCCATCGCCATCCTTTCCCCGGTCCCGGTCTCGGCATCCGTATTCTCGGAGAGATCACGGAAGAGAAAGCTACCATCTTGCAGAACGCCGATGACATCTATATGAGCCTTATGCGCGAGTGGGGGCTGTATGATCAGGTGTGGCAGGCCGGAGCCATCCTGCTGCCGGTTCGGTCCGTAGGCGTAATGGGCGACGAGCGTACCTACGAATACACCGTGGCACTGCGTGCCGTGACTTCTATGGATGCCATGAGTGCCGATTGGGTGCATTTGCCGTATGATTTTCTGGCCAAGGTGTCGAACGAAATAATCAATAAAGTGCGTGGCGTAAACCGCGTAGTCTACGACATCTCCTCCAAACCCCCCAGCACAATCGAATGGGAA","6.00","-8.05","56698","MLEKLIILDFGSQTTQLIARRIRELNTYCEVYPYNKLPEDLSGVRGIILSGSPYSVYDSKAFRIELSELRGKLPLLGICYGAQSLVHQAGGKVEPCDSREYGRTHLTLRQPDDALLTGLQSGTTVWMSHGDTITSLPEGFEVIAGTEDVPNAAFRIRGEKTWGVQFHPEIYHSEEGTKLLGNFLDICGMKRDWTPASFIEATVQELRERLGDDKVILALSGGVDSSVVAVLLNKAIGRNLTCIFVDHGLLRKGEFERVLQDYEHLGLNVIGVNAKEKFFAALSGVTDPEQKRKIIGRGFIEVFDEEARKLKDIKWLGQGTIYPDVIESLSITGMVIKSHHNVGGLPERMNLRLVEPLRMLFKDEVRRVGLELGMMPHLIHRHPFPGPGLGIRILGEITEEKATILQNADDIYMSLMREWGLYDQVWQAGAILLPVRSVGVMGDERTYEYTVALRAVTSMDAMSADWVHLPYDFLAKVSNEIINKVRGVNRVVYDISSKPPSTIEWE","647850 646282","TIGR ID: PG0589","GMP synthase","Cytoplasm","Numerous significant hits in gapped BLAST to GMP synthase protein,residues 4-506 are 53% similar to (AE000337) GMP synthetase (glutamine-hydrolyzing) of Escherichia coli, residues 3-506 are 55% similar to (AE004052) glutamine amidotransferase of Xylella fastidiosa, residues 5-506 are 53% similar to (AE002027) GMP synthase of Deinococcus radiodurans.This sequence is similar to BT4265.","
InterPro
IPR000991
Domain
Glutamine amidotransferase class-I
PF00117\"[6-187]TGATase
InterPro
IPR001674
Domain
GMP synthase, C-terminal
PF00958\"[413-505]TGMP_synt_C
TIGR00884\"[197-506]TguaA_Cterm
InterPro
IPR004506
Family
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
PF03054\"[213-235]TtRNA_Me_trans
InterPro
IPR004739
Domain
GMP synthase, N-terminal
TIGR00888\"[5-190]TguaA_Nterm
InterPro
IPR006220
Domain
Anthranilate synthase component II/delta crystallin
PR00097\"[74-85]T\"[163-176]TANTSNTHASEII
InterPro
IPR011702
Domain
Glutamine amidotransferase superfamily
PR00096\"[47-56]T\"[74-85]T\"[163-176]TGATASE
InterPro
IPR012998
Active_site
Glutamine amidotransferase, class I, active site
PS00442\"[74-85]TGATASE_TYPE_I
InterPro
IPR014729
Domain
Rossmann-like alpha/beta/alpha sandwich fold
G3DSA:3.40.50.620\"[192-381]TRossmann-like_a/b/a_fold
noIPR
unintegrated
unintegrated
G3DSA:3.30.300.10\"[398-506]TG3DSA:3.30.300.10
G3DSA:3.40.50.880\"[4-191]TG3DSA:3.40.50.880
PTHR11922\"[4-506]TPTHR11922
PTHR11922:SF2\"[4-506]TPTHR11922:SF2
SSF52317\"[4-225]TSSF52317
SSF52402\"[178-428]TSSF52402


","BeTs to 14 clades of COG0519COG name: GMP synthase - PP-ATPase domainFunctional Class: FThe phylogenetic pattern of COG0519 is amtkyqvcebrhuj--o--n-Number of proteins in this genome belonging to this COG is 1","***** IPB000991 (Glutamine amidotransferase class-I) with a combined E-value of 4.5e-07. IPB000991A 74-83 IPB000991B 160-171","Residues 46-184 are 47% similar to a (SYNTHASE GLUTAMINE BIOSYNTHESIS AMIDOTRANSFERASE) protein domain (PD000306) which is seen in GUAA_BACSU.Residues 302-506 are 64% similar to a (GMP SYNTHASE SYNTHETASE) protein domain (PD003340) which is seen in GUAA_ECOLI.Residues 212-300 are 67% similar to a (PROTEIN SYNTHETASE LIGASE BIOSYNTHESIS PROBABLE) protein domain (PD000352) which is seen in O85192_BBBBB.","","Thu Jun 14 11:19:22 MDT 2001","","Thu Jun 14 11:19:22 MDT 2001","Thu Jun 14 11:19:22 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:19:22 MDT 2001","Thu Jun 14 11:19:22 MDT 2001","","","Wed Jan 3 18:39:28 2001","Mon Jan 5 11:36:54 2004","Mon Apr 30 16:08:14 MDT 2001","Wed Jun 20 09:28:22 MDT 2001","Wed Jun 20 09:28:22 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P.gingivalis.","Wed Jan 3 18:41:48 2001","Mon Apr 30 16:08:14 MDT 2001","-71% similar to PDB:1GPM ESCHERICHIA COLI GMP SYNTHETASE COMPLEXED WITH AMP AND PYROPHOSPHATE (E_value = 6.5E_156);-73% similar to PDB:2DPL Crystal Structure of the GMP synthase from Pyrococcus horikoshii OT3 (E_value = 2.1E_82);-49% similar to PDB:2D7J Crystal Structure Analysis of Glutamine Amidotransferase from Pyrococcus horikoshii OT3 (E_value = 9.5E_22);-49% similar to PDB:1WL8 Crystal structure of PH1346 protein from Pyrococcus horikoshii (E_value = 6.1E_21);-48% similar to PDB:2A9V Crystal structure of (np_394403.1) from THERMOPLASMA ACIDOPHILUM at 2.45 A resolution (E_value = 4.0E_20);","","","Residues 6 to 187 (E-value = 3.5e-40) place PG0531 in the GATase family which is described as Glutamine amidotransferase class-I (PF00117)Residues 386 to 505 (E-value = 2.3e-63) place PG0531 in the GMP_synt_C family which is described as GMP synthase C terminal domain (PF00958)","Mon Jan 5 11:36:54 2004","34540397","","","","","","1","","","PG0589" "PG0532","648176","648568","393","TTGACAGTTGGCGGGATGCAACCAGTATCCATTATGGGCAAACATTTAAACAACTTTGAACGCCTTAGCATCCTTGAGGATTACCTCTCGGGGTCAGATAGCAAAGTAGCCATTGAGCAGAAATATGGTCTAAGTCATGGTCTCATTCGCTCTTGGCTTAGTAAATTTGGACTCGAAGATAAAGTTCATCCAGTCCCAATGAAAGTGTCCCAATCCCCCCAGAGTGAGCTACCCCTGAACGAAAAAGAAGAATTAGAGCAGCTACGTAAAGAAAATCGTGTCCTCAAGAGTCGTCTCAAGCGAGAAGAACTAGGGCATCAAGCCTACAAGCTACTTGTAGAGTTGGCAGAAGAAACCTACGGCATTCAGATACGAAAAAACTCCGAAGCCAAG","9.00","1.96","14955","LTVGGMQPVSIMGKHLNNFERLSILEDYLSGSDSKVAIEQKYGLSHGLIRSWLSKFGLEDKVHPVPMKVSQSPQSELPLNEKEELEQLRKENRVLKSRLKREELGHQAYKLLVELAEETYGIQIRKNSEAK","648176 648568","See PG0533 for associated transposase.Member of the IS3 family of insertion elements.TIGR ID: PG0590","ISPg5-related orf-1","Cytoplasm","PG0532 is equivalent to the previously reported gb|AAF69127.1 in GenBANK.Otherwise, no hits in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Fri Feb 9 17:26:13 MST 2001","Fri Feb 9 17:26:13 MST 2001","Fri Feb 9 17:26:13 MST 2001","Tue Dec 19 15:41:06 MST 2000","","","yes","Fri Feb 20 15:41:32 MST 1998","PG0532 is paralogously related to PG1862, PG1797, PG1490, PG1437, PG0033, PG0008, PG0392, PG1246, PG0840 and PG0419, all ORFs associated with ISPg5-related transposases. ","Tue Dec 19 15:41:06 MST 2000","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540398","","Califano,J.V., Kitten,T., Lewis,J.P., Macrina,F.L.,Fleischmann,R.D., Fraser,C.M., Duncan,M.J. and Dewhirst,F.E.Characterization of Porphyromonas gingivalis insertionsequence-like element ISPg5.Infect. Immun. 68 (9), 5247-5253 (2000)20407340","","Fri Feb 9 17:26:13 MST 2001","","1","","","PG0590" "PG0533","648625","649560","936","CTGCTTGGCTTTAGCCGTCAGGCCTTTTATAAACGTCATCTCAACGATTTAGCACAACATGAGGAGGATGTCCTATGCAGTAGTATCATCCAATATTGTTGGCACTTAAGACAAGCAGAGCACCTACCTCAAGCCGGCTTCCGAGAGCTCATGGTGCTTTGTCAGCAATACTTCGGCCCCAAGTTCACGCTTGGGCGCGATCGCTTTTGCGCCCTACTCAGACGCCATGGTATGATGCTGCGCAAACGGTCTGTGCGCCCTCGGACAACCAACTCTCGGCATAGGCTCTACAAGTATGAAGACCTGCTCAATACAGAGCCTAAGTTTGTGCCTCAAAGACCTGGGGAACTCCTTGTAGCAGACATCACCTACGTGGCTTACCAAGATGGGTTTGCCTATCTCTCCCTACTGACCGATGCCTATAGTCGCTGTATCGTAGGGTATTGCTTACATCCTACCCTAGAGGTTGAAGGCTGTTTGAATGCTCTACATCAAGCCTTTGCTTTCTACGATCAGCATCAAATTGATACGAGCAATATGATTCATCATAGCGACCGAGGCATTCAGTATGCCGGTAAGAGCTACACCGATCTGTTGCATGGGCGAGGCTGTCGCATCAGCATGACTCAGACGGGAGATCCTCTGCATAATGCATTGGCTGAGCGGATGAACAATACGCTCAAGAACTCGTGGCACATCTCCTCTTCGAAGCAGTCTTTTGATCAAGCACTCCTTTCTGTAGAACAAGCCGTGCGCATGTACAACGAGGCGCGTCCACATCAAGCTCTAGGGGCGAAAACGCCTATGCAAGTCATTGCGCCAGAGTCTAAAAATCCGTTACTAACGAGGAGGGAGCATGGGCCAGAGATTGCCCCCGAGCTATACCGAAGGATGAATGTCAGACAAAGAGCTAACTTTGCTCGTGTCAACCGAAAT","9.90","14.47","36163","LLGFSRQAFYKRHLNDLAQHEEDVLCSSIIQYCWHLRQAEHLPQAGFRELMVLCQQYFGPKFTLGRDRFCALLRRHGMMLRKRSVRPRTTNSRHRLYKYEDLLNTEPKFVPQRPGELLVADITYVAYQDGFAYLSLLTDAYSRCIVGYCLHPTLEVEGCLNALHQAFAFYDQHQIDTSNMIHHSDRGIQYAGKSYTDLLHGRGCRISMTQTGDPLHNALAERMNNTLKNSWHISSSKQSFDQALLSVEQAVRMYNEARPHQALGAKTPMQVIAPESKNPLLTRREHGPEIAPELYRRMNVRQRANFARVNRN","648775 649560","One of eleven ISPg5 elements in the genome (see Paralogs). Califano et al. report considerable strain diversity of these (Infect. Immun. 68 (9), 5247-5253 (2000)).Member of the IS3 family of insertion elements. See PG0532 for associated ORF.TIGR ID: PG0591","ISPg5 transposase","Cytoplasm","PG0533 is equivalent to the previously reported gb|AAF69128.1| in GenBANK.Numerous significant hits in gapped BLAST to transposase proteins; e.g. residues 91-213 are 56% similar to transposase homolog (U67062) of Bacteriodes thetaiotaomicrom, residues 64-287 are 32% similar to InsB (AF153317) of Shigella dysenteriae, residues 64-268 are 33% similar to Hp1 (AF081284) of E.coli.","
InterPro
IPR001584
Domain
Integrase, catalytic core
PF00665\"[110-273]Trve
PS50994\"[110-276]TINTEGRASE
noIPR
unintegrated
unintegrated
G3DSA:3.30.420.10\"[113-281]Tno description


","No hit to the COGs database.","***** PF01836 (Transposase) with a combined E-value of 4.3e-23. PF01836B 103-154 PF01836C 181-190 PF01836D 215-222 PF01836E 253-272","No significant hit to the ProDom database.","","Thu Jun 14 11:21:06 MDT 2001","","Thu Jun 14 11:21:06 MDT 2001","Thu Jun 14 11:21:06 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:21:06 MDT 2001","Thu Jun 14 11:21:06 MDT 2001","","Wed Jun 20 09:20:08 MDT 2001","Fri Feb 9 16:32:02 MST 2001","Wed Jun 20 09:26:49 MDT 2001","Thu Nov 16 10:46:55 MST 2000","Wed Jun 20 09:20:08 MDT 2001","","yes","Fri Feb 20 15:41:32 MST 1998","PG0533 is paralogously related to PG1861, PG1491, PG0391, PG0418, PG1436, PG1796, PG0034, PG0007, PG1247 and PG0841.","Fri Mar 10 10:56:42 MST 2000","Thu Jun 14 11:21:06 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 110 to 273 (E-value = 4.4e-31) place PG0533 in the rve family which is described as Integrase core domain (PF00665)","Wed Jun 20 09:20:08 MDT 2001","34540399","","Califano,J.V., Kitten,T., Lewis,J.P., Macrina,F.L., Fleischmann,R.D., Fraser,C.M.,Duncan,M.J. and Dewhirst,F.E. Characterization of Porphyromonas gingivalis insertionsequence-like element ISPg5.Infect. Immun. 68 (9), 5247-5253 (2000)","","Thu Nov 16 10:46:55 MST 2000","","1","","","PG0591" "PG0534","650029","650283","255","ATGAAAAAAGGTATTCATCCCGAAAATTATCGTCCGGTGGTGTTTAAGGATATGTCCAACGAAGACATCTTTATCACACGCTCTACGATGGAGGCAAAGGAGACGATCGAGATCGACGGCGTTACTTACCCTTTGATCAAAGTGGAAATCTCCAATACGTCGCATCCGTTCTTCACAGGCAAGGCCAAACTTGTCGATACGGCCGGTCGTGTGGATAAGTTCATGAGCCGTTACGGCGACCGCAACAAGAAGAAG","10.30","4.47","9781","MKKGIHPENYRPVVFKDMSNEDIFITRSTMEAKETIEIDGVTYPLIKVEISNTSHPFFTGKAKLVDTAGRVDKFMSRYGDRNKKK","650029 650283","TIGR ID: PG0592","50S ribosomal protein L31","Cytoplasm, Periplasm","This sequence is orthologous to CT022.Numerous significant hits in gapped BLAST to 50S ribosomal protein L31; e.g. residues 1-78 are 62% similar to AE003983 of Xylella fastidiosa, residues 1-79 are 54% similar to AE006523 of Streptococcus pyogenes, residues 1-78 are 59% similar to AE001133 of Borrelia burgdorferi.","
InterPro
IPR002150
Family
Ribosomal protein L31
PR01249\"[2-19]T\"[45-60]T\"[60-78]TRIBOSOMALL31
PF01197\"[1-81]TRibosomal_L31
TIGR00105\"[1-83]TL31
PS01143\"[49-70]TRIBOSOMAL_L31


","BeTs to 11 clades of COG0254COG name: Ribosomal protein L31Functional Class: JThe phylogenetic pattern of COG0254 is -----qvcEBrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB002150 (Ribosomal protein L31) with a combined E-value of 8.8e-21. IPB002150A 1-16 IPB002150B 48-78","Residues 1-78 are 59% similar to a (PROTEIN RIBOSOMAL L31 50S) protein domain (PD003785) which is seen in RL31_BORBU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Mar 21 16:20:08 MST 2000","Wed Jun 6 15:29:25 MDT 2001","Wed Jun 6 15:29:25 MDT 2001","Wed Jun 6 15:29:25 MDT 2001","Wed Jun 6 15:29:25 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Jun 6 15:29:25 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 1 to 81 (E-value = 8e-15) place PG0534 in the Ribosomal_L31 family which is described as Ribosomal protein L31 (PF01197)","Wed Jun 6 15:29:25 MDT 2001","34540400","","","","","","1","","","PG0592" "PG0535","650503","651996","1494","ATGAACAAAGTGTGGAAATACGTGACGGGAGCCTTTGGCATAGCAGCCGTCAGCGCAGTAGCATCGGTGGCAACAGTGGCTGCTTTGGGACACTACCGAGGTGAATCTTTCATAACCGATGGTACGGAAAACGAATTCGGATTCAAGCAGACATCTTACACAACGACATCCGGAGCCTCCGCCGCTCTGCCCAATTTGGTCGGAGCTGCAGAAGCATCGGTACACGCCGTAGTACACATCAAAGTGGAGTCCGAGCAGCGAATGGACTCTCAGCAGTACTTCGATCCGTTCGAATTCTTCTTCGGAGGCGAATCCAGAAACTTCCAGCGTCCCCAAACACGGCAGGTAGTAGGCTACGGTTCGGGGGTGATCATCAGCACAGACGGATATATCATCACGAATAATCATGTAGTAAAGGGAGCCAAAGAAATGACGGTAACGCTCAATGACAATCGTACCTTCAAGGCCAAACTGATCGGTAGCGATGCCACGACCGACATAGCCTTGCTGAAAGTAGATGCCAAGGGGCTGCCGACAATTCCTTTCGGCGACTCTGACAAGCTTCGTGTGGGAGAGTGGGTATTGGCCGTAGGCAATCCTTTTAATCTTACTTCCACGGTAACGGCCGGCATCGTCAGCGCAAAAGGTCGCTCCACTCAGCAGGTGGCCAGAGGCGGTTCGCTCCAGATAGAATCTTTTATTCAGACGGATGCTGCCGTCAATTCAGGCAACAGCGGCGGTGCGTTGGTGAATGATCGTGGCGAACTGATCGGTATCAATACGATGATCTACAGCCAAACGGGCAACTATGCCGGCTACTCATTTGCCGTACCTATTTCCATAGCGGCGAAAGTGGTAGCCGACATCAAGCAGTACGGTACCGTACAGCGCGCCGTGCTGGGCATTGCCGGCGGAGATATATCGGACGAAGCAGTCAAAGAATACGATCTGAAGGTGCGCGAGGGTGCTCTCGTAGCAGACTTTGCCGAAGTCAGTGCAGCTATCTCTGCCGGTATGCAGAAGGGGGATGTGATCACCGCCGTAGAAGGCAAACAGATAAAGAGTTTCCCACAACTGCAAGAAGCCATCAGCCGCTACAGACCGGGAGACAAAGTGAAGCTGACCATCAATCGTAAGGGAGCGACCAAGGAACTGACCGTCACGCTCAAGAACAATGAAGGAAGTACTTCGGTAATCACCGGCGAATCGACCGGAAATGTATTGGGAGCATCATTCAAAGACCTCAGTGCCGAACAAATGCGATCCTATGGTGTTTCTTATGGTGTAGAGGTAACCTCTGTAAGCTCGGGGAAATTCAAGGATGCAGGTATCAAGAAAGGATTCATCATCCTTTCGATCAACCGCCAACCGGTAAGCTCGGGTGCCGATGTCAGCGACATCGTTCGTGAGGCCGGACAGAGCCGATCGGGTCGCTTGATCATCGTGCGTGGGTTTTATCCGGACGGTAATATCCGGACCTTCGAAGTAGAACTA","8.80","1.99","52766","MNKVWKYVTGAFGIAAVSAVASVATVAALGHYRGESFITDGTENEFGFKQTSYTTTSGASAALPNLVGAAEASVHAVVHIKVESEQRMDSQQYFDPFEFFFGGESRNFQRPQTRQVVGYGSGVIISTDGYIITNNHVVKGAKEMTVTLNDNRTFKAKLIGSDATTDIALLKVDAKGLPTIPFGDSDKLRVGEWVLAVGNPFNLTSTVTAGIVSAKGRSTQQVARGGSLQIESFIQTDAAVNSGNSGGALVNDRGELIGINTMIYSQTGNYAGYSFAVPISIAAKVVADIKQYGTVQRAVLGIAGGDISDEAVKEYDLKVREGALVADFAEVSAAISAGMQKGDVITAVEGKQIKSFPQLQEAISRYRPGDKVKLTINRKGATKELTVTLKNNEGSTSVITGESTGNVLGASFKDLSAEQMRSYGVSYGVEVTSVSSGKFKDAGIKKGFIILSINRQPVSSGADVSDIVREAGQSRSGRLIIVRGFYPDGNIRTFEVEL","650503 651996","In E. coli, this enzyme is induced by heat shock, when it is required for degradation of damaged proteins.In E. coli, htrA is transcribed from a sigma-E promoter. HtrA is a periplasmic endoprotease which is indispensable at high temperatures and which may function to degrade transiently degraded substrates in periplasm. See also degQ. Serine proteases belong to peptidase family S2C; also known as the HtrA/HhoA/HhoB family. TIGR ID: PG0593","periplasmic serine protease","Outer membrane, Periplasm, Cytoplasm","Several significant hits with gapped blast to serine proteases or HtrA-like proteins from, i.e., Pseudomonas aeruginosa (gi: 1184684), Haemophilus influenzae (gi: 1170411; 2935166; 2935168), Chlamydia trachomatis (gi: 3329293), Chlamydia muridarum (gi: 7190248), among others.This protein is similar to CT823, a predicted periplasmic serine protease, and to BT1312.","
InterPro
IPR001254
Domain
Peptidase S1 and S6, chymotrypsin/Hap
PF00089\"[105-286]TTrypsin
SM00020\"[65-286]TTryp_SPc
InterPro
IPR001478
Domain
PDZ/DHR/GLGF
SM00228\"[298-380]T\"[406-485]TPDZ
SSF50156\"[297-393]T\"[404-498]TPDZ
InterPro
IPR001940
Family
Peptidase S1C, HrtA/DegP2/Q/S
PR00834\"[129-141]T\"[150-170]T\"[190-214]T\"[230-247]T\"[252-269]T\"[338-350]TPROTEASES2C
InterPro
IPR009003
Domain
Peptidase, trypsin-like serine and cysteine
SSF50494\"[62-294]TPept_Ser_Cys
InterPro
IPR011782
Family
Peptidase S1C, Do
TIGR02037\"[64-494]TdegP_htrA_DO
noIPR
unintegrated
unintegrated
G3DSA:2.30.42.10\"[316-388]T\"[404-498]TG3DSA:2.30.42.10
G3DSA:2.40.10.10\"[87-173]T\"[181-302]TG3DSA:2.40.10.10
PTHR22939\"[76-94]T\"[117-487]TPTHR22939
PTHR22939:SF10\"[76-94]T\"[117-487]TPTHR22939:SF10


","BeTs to 13 clades of COG0265COG name: Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domainFunctional Class: OThe phylogenetic pattern of COG0265 is --t-yqvCEBRHuj--oLinXNumber of proteins in this genome belonging to this COG is 3","No significant hit to the Blocks database.","Residues 185-308 are 57% similar to a (PROTEASE SERINE PROTEIN PERIPLASMIC) protein domain (PD001397) which is seen in HTOA_HAEIN.Residues 189-456 are 24% similar to a (PROTEIN SPC98-TOM70 INTERGENIC REGION) protein domain (PD145944) which is seen in YNM3_YEAST.Residues 120-184 are 60% similar to a (PROTEASE SERINE PROTEIN PERIPLASMIC) protein domain (PD001340) which is seen in Q57155_PSEAE.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Thu Dec 4 13:21:12 2003","Thu Mar 30 16:15:55 MST 2000","Thu Dec 4 13:21:12 2003","Thu Feb 22 18:54:01 MST 2001","","Thu Feb 22 18:54:01 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Fri Apr 7 12:55:20 MDT 2000","Tue Jul 17 14:51:48 2007","-54% similar to PDB:1KY9 Crystal Structure of DegP (HtrA) (E_value = 1.2E_66);-59% similar to PDB:1SOT Crystal Structure of the DegS stress sensor (E_value = 2.6E_48);-59% similar to PDB:1SOZ Crystal Structure of DegS protease in complex with an activating peptide (E_value = 2.6E_48);-59% similar to PDB:1VCW Crystal structure of DegS after backsoaking the activating peptide (E_value = 2.6E_48);-59% similar to PDB:1TE0 Structural analysis of DegS, a stress sensor of the bacterial periplasm (E_value = 3.7E_47);","","","Residues 105 to 286 (E-value = 4e-21) place PG0535 in the Trypsin family which is described as Trypsin (PF00089)","Wed May 23 17:25:11 MDT 2001","34540401","","Roy F, Vanterpool E, Fletcher HM., HtrA in Porphyromonas gingivalis can regulate growth and gingipain activity under stressful environmental conditions., Microbiology. 2006 Nov;152(Pt 11):3391-8.PMID: 17074908Yuan L, Rodrigues PH, Bélanger M, Dunn WA Jr, Progulske-Fox A., Porphyromonas gingivalis htrA is involved in cellular invasion and in vivo survival., Microbiology. 2008 Apr;154(Pt 4):1161-9.PMID: 18375808Yuan L, Hillman JD, Progulske-Fox A., Microarray analysis of quorum-sensing-regulated genes in Porphyromonas gingivalis.Infect Immun. 2005 Jul;73(7):4146-54. PMID: 15972504","Lipinska, B., O. Fayet, L. Baird, C. Georgopoulos. 1989. Identification, characterization, and mapping of the Escherichia coli htrA gene, whose product is essential for bacterial growth only at elevated temperatures. J. Bacteriol. 171:1574-1584. PubMed: 2537822.Lipinska, B., M. Zylicz, C. Georgopoulos 1990. The HtrA (DegP)protein, essential for Escherichia coli survival at high temperatures, is an endopeptidase. J. Bacteriol. 172:1791-1797. PubMed: 2180903.","Wed Jul 9 18:33:10 2008","Tue Jul 17 14:51:48 2007","1","","","PG0593" "PG0536","652189","653049","861","ATGAGGCAACTTAAAATTTCCAAGTCGATCACGAATCGTGAAAGCGCGTCTCTGGACAAGTATCTGCAGGAGATCGGTCGCGAGGACCTGATCTCGGTCGAAGAAGAAGTAGAGTTGGCGCAAGCCATTAAACGCGGTGATCGCAAAGCTCTTGAAAAGCTGACTCGTGCCAATCTTCGTTTCGTAGTATCCGTAGCCAAACAATACCAGAATCAGGGTCTCAGTTTGCCGGACTTGATCAATGAAGGAAACCTCGGATTGATCAAAGCGGCAGAGAAATTCGACGAAACGCGCGGTTTTAAGTTTATCTCGTATGCCGTATGGTGGATCCGCCAGTCCATCCTGCAAGCATTGGCCGAGCAGTCTCGTATCGTCCGCCTGCCACTGAATCAGGTGGGAACACTCAACAAGATCATCAAGGCCCAGCAGAAATTCGAGCAGGAGAATGAGCGTCGCCCCTCGTCAGCAGAGTTGGCTAAGGAGCTGGACATCGCAGAAGACAAAATTGCCGATACGATGAAAGTATCCGGACGGCATATCTCTGTGGATGCTCCTTTCGTGGAAGGTGAAGACAACAGCCTGCTGGATGTACTCGTCAATGAGGATACCCCCAATACGGACAAGTCGCTGATCAATGAATCGCTGGCCGTTGAGATAGAAAGAGCTTTGTCCACACTGACGGAGCGCGAAGCAGAGATCGTGAAGCTGTTCTTCGGCATTGCCGGCTGTCAAGAGATGACACTGGAAGAAATCGGCGACAAATTCGGTCTCACCCGCGAACGCGTCCGCCAGATAAAAGAGAAGGCTATTCGCCGTTTGCGACAGAGCAACAAGTGCAAGAATCTGAAAGGTTATCTCGGC","7.20","0.18","32588","MRQLKISKSITNRESASLDKYLQEIGREDLISVEEEVELAQAIKRGDRKALEKLTRANLRFVVSVAKQYQNQGLSLPDLINEGNLGLIKAAEKFDETRGFKFISYAVWWIRQSILQALAEQSRIVRLPLNQVGTLNKIIKAQQKFEQENERRPSSAELAKELDIAEDKIADTMKVSGRHISVDAPFVEGEDNSLLDVLVNEDTPNTDKSLINESLAVEIERALSTLTEREAEIVKLFFGIAGCQEMTLEEIGDKFGLTRERVRQIKEKAIRRLRQSNKCKNLKGYLG","652189 653049","TIGR ID: PG0594","RNA polymerase sigma factor RpoD","Cytoplasm","This sequence is weakly similar to CT061, a predicted RNA polymerase Whig-like sigma factor, and to BT1311.Numerous significant hits in gapped BLAST to RNA polymerase sigma factor RpoD; e.g. residues 1-287 are 64% similar to U67718 of Chlorobium tepidum, residues 21-286 are 46% similar to U67424 of Heliobacillus mobilis, residues 21-286 are 45% similar to AP001511 of Bacillus halodurans.","
InterPro
IPR000943
Domain
RNA polymerase, Sigma-70 factor
PR00046\"[78-91]T\"[102-110]T\"[226-238]T\"[247-262]T\"[262-273]TSIGMA70FCT
InterPro
IPR007624
Domain
RNA polymerase sigma-70 region 3
PF04539\"[128-210]TSigma70_r3
InterPro
IPR007627
Domain
RNA polymerase sigma-70 region 2
PF04542\"[54-124]TSigma70_r2
InterPro
IPR007630
Domain
RNA polymerase sigma-70 region 4
PF04545\"[222-275]TSigma70_r4
InterPro
IPR009042
Domain
RNA polymerase, Sigma-70 region 1.2
PF00140\"[15-51]TSigma70_r1_2
InterPro
IPR011991
Domain
Winged helix repressor DNA-binding
G3DSA:1.10.10.10\"[127-178]T\"[208-286]TWing_hlx_DNA_bd
InterPro
IPR013325
Domain
RNA polymerase sigma factor, region 2
SSF88946\"[11-124]TSigma_r2
InterPro
IPR014284
Domain
RNA polymerase sigma-70
TIGR02937\"[49-277]Tsigma70-ECF
noIPR
unintegrated
unintegrated
G3DSA:1.10.601.10\"[20-123]TG3DSA:1.10.601.10


","BeTs to 12 clades of COG0568COG name: DNA-dependent RNA polymerase sigma subunits (sigma70/32)Functional Class: KThe phylogenetic pattern of COG0568 is -----QvCEBRHujgpOLinXNumber of proteins in this genome belonging to this COG is 1","***** IPB000943 (Sigma-70 factor family) with a combined E-value of 1.1e-27. IPB000943 67-118","Residues 24-249 are 22% similar to a (SIGMA FACTOR RNA POLYMERASE) protein domain (PD023207) which is seen in RPSH_BACSU.Residues 48-80 are 75% similar to a (FACTOR SIGMA RNA POLYMERASE TRANSCRIPTION REGULATION) protein domain (PD003138) which is seen in P71149_CHLTE.Residues 1-46 are 60% similar to a (SIGA) protein domain (PD076051) which is seen in P71149_CHLTE.Residues 246-285 are 80% similar to a (FACTOR SIGMA RNA POLYMERASE TRANSCRIPTION REGULATION) protein domain (PD000301) which is seen in P71149_CHLTE.Residues 82-109 are 92% similar to a (FACTOR SIGMA RNA POLYMERASE TRANSCRIPTION REGULATION) protein domain (PD000305) which is seen in P71149_CHLTE.Residues 110-230 are 62% similar to a (FACTOR SIGMA RNA POLYMERASE TRANSCRIPTION REGULATION) protein domain (PD000270) which is seen in P71149_CHLTE.Residues 21-80 are 58% similar to a (FACTOR SIGMA RNA POLYMERASE TRANSCRIPTION REGULATION) protein domain (PD000245) which is seen in RPSD_CLOAB.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Jun 6 15:44:24 MDT 2001","Thu Dec 4 13:19:26 2003","Tue Jan 7 14:22:45 2003","Tue Mar 13 16:50:31 MST 2001","Tue Mar 13 16:50:31 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 13 16:50:31 MST 2001","-67% similar to PDB:1L9U THERMUS AQUATICUS RNA POLYMERASE HOLOENZYME AT 4 A RESOLUTION (E_value = 1.2E_51);-67% similar to PDB:1L9Z Thermus aquaticus RNA Polymerase Holoenzyme/Fork-Junction Promoter DNA Complex at 6.5 A Resolution (E_value = 1.2E_51);-66% similar to PDB:1IW7 Crystal structure of the RNA polymerase holoenzyme from Thermus thermophilus at 2.6A resolution (E_value = 1.1E_50);-66% similar to PDB:1SMY Structural basis for transcription regulation by alarmone ppGpp (E_value = 1.1E_50);-66% similar to PDB:1ZYR Structure of Thermus thermophilus RNA polymerase holoenzyme in complex with the antibiotic streptolydigin (E_value = 1.1E_50);","","","Residues 15 to 51 (E-value = 2.2e-07) place PG0536 in the Sigma70_r1_2 family which is described as Sigma-70 factor, region 1.2 (PF00140)Residues 54 to 124 (E-value = 1.2e-21) place PG0536 in the Sigma70_r2 family which is described as Sigma-70 region 2 (PF04542)Residues 128 to 210 (E-value = 3.8e-15) place PG0536 in the Sigma70_r3 family which is described as Sigma-70 region 3 (PF04539)Residues 222 to 275 (E-value = 2.9e-21) place PG0536 in the Sigma70_r4 family which is described as Sigma-70, region 4 (PF04545)","Thu Dec 4 13:19:26 2003","34540402","","","Gruber,T.M. and Bryant,D.A. 1998. Characterization of the group 1 and group 2 sigma factors of the green sulfur bacterium Chlorobium tepidum and the green non-sulfur bacterium Chloroflexus aurantiacus. Arch. Microbiol. 170 (4): 285-296. PubMed: 9732443.","","Tue Mar 13 16:50:31 MST 2001","1","","","PG0594" "PG0537","653149","653499","351","ATGAACAACTACGAAACCGTTTTCATTTTGACTCCCGTTTTGTCTGATGCTCAGATGAAGGAAGCGGTAGACAAGTTCACCGGTCTCCTCAAGCAGGAAGGAGCCGTGATCGTGAACGAAGAAAACTGGGGCTTGCGCAAGCTCGCCTATCCGATCCAAAAGAAATCGACCGGCTTCTATCAGCTCGTCGAATTTCAAGCTAACCCCGATGTAATCGCCAAGTTGGAGACGAACTTCCGTCGTGACGAGCGCGTGATTCGCTTCTTGACTTTCCGTCAGGATAAGTTCGCAGCAGAGTATGCAGCAAAGAGAAGAAGTCTGAAAGCAAAAACAGAAGAAGTAAAGGAGGCG","10.00","3.00","13577","MNNYETVFILTPVLSDAQMKEAVDKFTGLLKQEGAVIVNEENWGLRKLAYPIQKKSTGFYQLVEFQANPDVIAKLETNFRRDERVIRFLTFRQDKFAAEYAAKRRSLKAKTEEVKEA","653095 653499 [Shorter 715 354 99]","The 30S ribosomal protein S6 is believed to bind to S18 and the two together bind 16S RNA.TIGR ID: PG0595","30S ribosomal protein S6","Cytoplasm","Numerous significant hits in gapped BLAST to 30S ribosomal S6 protein; e.g. residues 4-92 are 44% similar to gbAAC06443.1 ribosomal protein S06 of Aquifex aeolicus, residues 1-99 are 35% similar to embCAA14510.1 30S ribosomal protein S6 of Rickettsia prowazekii, residues 1-94 are 34% similar to gbAAD08292.1 ribosomal protein S6 of Helicobacter pylori 26695.This protein is similar to CT801, a predicted 30S ribosomal protein S6 from Chlamydia trachomatis.","
InterPro
IPR000529
Family
Ribosomal protein S6
PD003809\"[41-87]TRibosomal_S6
PF01250\"[2-93]TRibosomal_S6
TIGR00166\"[1-95]TS6
InterPro
IPR014717
Domain
Translation elongation factor EF1B/ribosomal protein S6, conserved
G3DSA:3.30.70.60\"[1-101]TTransl_elong_EF1B/rib_con
noIPR
unintegrated
unintegrated
SSF54995\"[1-95]TSSF54995


","BeTs to 12 clades of COG0360COG name: Ribosomal protein S6Functional Class: JThe phylogenetic pattern of COG0360 is ----yqvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB000529 (Ribosomal protein S6) with a combined E-value of 1.7e-21. IPB000529A 1-16 IPB000529B 44-87","Residues 4-92 are 44% similar to a (RIBOSOMAL PROTEIN S6 30S) protein domain (PD003809) which is seen in O66474_AQUAE.","","Thu Jun 14 11:21:49 MDT 2001","","Thu Jun 14 11:21:49 MDT 2001","Thu Jun 14 11:21:49 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:21:49 MDT 2001","Thu Jun 14 11:21:49 MDT 2001","","Wed Jun 20 09:12:55 MDT 2001","Wed Mar 29 16:03:47 MST 2000","Tue Jul 17 14:53:10 2007","Thu Jan 4 11:41:27 2001","Wed Jun 20 09:12:55 MDT 2001","Wed Jun 20 09:12:55 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Thu Apr 6 17:36:03 MDT 2000","Tue Jul 17 14:53:10 2007","-67% similar to PDB:2J5A FOLDING OF S6 STRUCTURES WITH DIVERGENT AMINO-ACID COMPOSITION: PATHWAY FLEXIBILITY WITHIN PARTLY OVERLAPPING FOLDONS (E_value = 1.6E_15);-54% similar to PDB:1P6G Real space refined coordinates of the 30S subunit fitted into the low resolution cryo-EM map of the EF-G.GTP state of E. coli 70S ribosome (E_value = 7.0E_11);-54% similar to PDB:1P87 Real space refined coordinates of the 30S subunit fitted into the low resolution cryo-EM map of the initiation-like state of E. coli 70S ribosome (E_value = 7.0E_11);-54% similar to PDB:1VS5 Crystal structure of the bacterial ribosome from escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution. this file contains the 30s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes and is described in remark 400. (E_value = 7.0E_11);-54% similar to PDB:1VS7 Crystal structure of the bacterial ribosome from escherichia coli in complex with the antibiotic kasugamyin at 3.5a resolution. this file contains the 30s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes and is described in remark 400. (E_value = 7.0E_11);","","","Residues 2 to 93 (E-value = 2.8e-29) place PG0537 in the Ribosomal_S6 family which is described as Ribosomal protein S6 (PF01250)","Wed Jun 20 09:12:55 MDT 2001","34540403","","","Agalarov SC, Zheleznyakova EN, Selivanova OM, Zheleznaya LA, Matvienko NI, Vasiliev VD, Spirin AS. 1998. In vitro assembly of a ribonucleoprotein particle corresponding to the platform domain of the 30S ribosomal subunit. Proc Natl Acad Sci U S A 95(3):999-1003. PubMed: 9448274.Schnier,J., Kitakawa,M. and Isono,K. 1986. The nucleotide sequence of an Escherichia coli chromosomal region ontaining the genes for ribosomal proteins S6, S18, L9 and an open reading frame. Mol. Gen. Genet. 204 (1): 126-132. PubMed: 3528756.","","Tue Jul 17 14:53:10 2007","1","","","PG0595" "PG0538","653506","653775","270","ATGGCAGCTAACAATCAAGGAGAAATTCGTTACCTGACTCCGTTGTCGGTAGACACAAAGAAGAAGAAATACTGTCGGTTCAAAAAGAGCGGTATCCGCTATATCGACTATAAGGATCCCGAATTCCTGAAAAAGTTCCTGAACGAACAAGGCAAGATCCTGCCGCGTCGCATCACCGGCACTTCGTTGAAGTTCCAACGCCGTGTCGCTCAGGCAGTGAAGCGTGCACGCCACTTGGCACTGTTGCCCTACGTAACCGATATGATGAAA","11.20","15.17","10605","MAANNQGEIRYLTPLSVDTKKKKYCRFKKSGIRYIDYKDPEFLKKFLNEQGKILPRRITGTSLKFQRRVAQAVKRARHLALLPYVTDMMK","653506 653775 [Shadowed by 715]","This protein is thought to be involved in aminoacyl-tRNA binding.TIGR ID: PG0596","30S ribsomal protein S18","Cytoplasm, Periplasm","Numerous significant hits in gapped BLAST to 30S ribosomal S18 protein; e.g. residues 20-87 are 50% similar to prf||1506337A ribosomal protein S18 of Bacillus stearothermophilus, residues 20-87 are 50% similar to sp|P10806|RS18_BACST 30S ribosomal protein S18, residues 20-86 are 49% similar to emb|CAB16126.1 ribosomal protein S18 of Bacillus subtilis.This protein is similar to CT802, a predicted 30S ribsomal protein S18 from Chlamydia trachomatis.","
InterPro
IPR001648
Family
Ribosomal protein S18
PD002239\"[34-85]TRibosomal_S18
PR00974\"[42-52]T\"[52-59]T\"[60-74]T\"[74-84]TRIBOSOMALS18
G3DSA:4.10.640.10\"[4-85]TRibosomal_S18
PTHR13479\"[4-89]TRibosomal_S18
PF01084\"[29-82]TRibosomal_S18
TIGR00165\"[18-87]TS18
PS00057\"[35-58]NRIBOSOMAL_S18
SSF46911\"[10-87]TRibosomal_S18
noIPR
unintegrated
unintegrated
PTHR13479:SF16\"[4-89]TPTHR13479:SF16


","BeTs to 13 clades of COG0238COG name: Ribosomal protein S18Functional Class: JThe phylogenetic pattern of COG0238 is ----yqvcebRhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB001648 (Ribosomal protein S18) with a combined E-value of 8.1e-37. IPB001648 35-83","Residues 31-82 are 51% similar to a (PROTEIN RIBOSOMAL S18 30S) protein domain (PD002239) which is seen in Q9Z6V4_BBBBB.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Wed Mar 29 15:57:57 MST 2000","Wed Mar 29 15:57:57 MST 2000","Thu Jan 4 11:59:06 2001","Thu Jan 4 11:59:06 2001","Thu Feb 22 19:15:01 MST 2001","Thu Feb 22 19:15:01 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Thu Apr 6 17:45:34 MDT 2000","Thu Feb 22 19:15:01 MST 2001","-62% similar to PDB:1P6G Real space refined coordinates of the 30S subunit fitted into the low resolution cryo-EM map of the EF-G.GTP state of E. coli 70S ribosome (E_value = 4.1E_11);-62% similar to PDB:1P87 Real space refined coordinates of the 30S subunit fitted into the low resolution cryo-EM map of the initiation-like state of E. coli 70S ribosome (E_value = 4.1E_11);-62% similar to PDB:1VS5 Crystal structure of the bacterial ribosome from escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution. this file contains the 30s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes and is described in remark 400. (E_value = 4.1E_11);-62% similar to PDB:1VS7 Crystal structure of the bacterial ribosome from escherichia coli in complex with the antibiotic kasugamyin at 3.5a resolution. this file contains the 30s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes and is described in remark 400. (E_value = 4.1E_11);-62% similar to PDB:2AVY Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution. This file contains the 30S subunit of one 70S ribosome. The entire crystal structure contains two 70S ribosomes and is described in remark 400. (E_value = 4.1E_11);","","","Residues 29 to 82 (E-value = 3.4e-32) place PG0538 in the Ribosomal_S18 family which is described as Ribosomal protein S18 (PF01084)","Thu Feb 22 19:15:01 MST 2001","34540404","","","McDougall,J., Choli,T., Kruft,V., Kapp,U. and Wittmann-Liebold,B. 1989. The complete amino acid sequence of ribosomal protein S18 from the moderate thermophile Bacillus stearothermophilus. FEBS Lett. 245 (1-2), 253-260. PubMed: 2647521.Schnier,J., Kitakawa,M. and Isono,K. 1986. The nucleotide sequence of an Escherichia coli chromosomal region ontaining the genes for ribosomal proteins S6, S18, L9 and an open reading frame. Mol. Gen. Genet. 204 (1): 126-132. PubMed: 3528756.","","Thu Apr 6 17:45:34 MDT 2000","1","","","PG0596" "PG0540","653803","654339","537","ATGCAAGTTATTTTGAAAGAAGATGTAGTCAATCTTGGCTACAAAGACGATATCGTGACAGTCAAGGACGGTTACGGTCGCAACTTTCTAATCCCGCAGGGTAAAGCAGTGATCGCATCGGAATCAGCCAAGAAAGTATTGGCTGAGAACCTGAGACAACGCGCTCACAAAATCGCTCAGATCAAGAAAGAGGCTGAAGAAAAAGCTGCATCAATGCAGGGCATCAGCCTGACGATCAAGGCCAAGACAAGCAGCACGGGCACAATCTTCGGATCGGTAACGAATATCCAGATCGCAGAAGAGCTGGCGAAAAAAGGCGTGGAAGTGGATCGTAAGATCATCGTCCTCAAGCCTGCCGTTAAGGAAGTGGGCAACTATACGGCTGTAGTGCGCCTGCACAAGGAAGTTACTGTAGAAATTCCCTTCGAAGTAGTTTCTGAAAATGAAACTATCATAGAAGCAAAGCCGGAAGAAGCTCCTGTTCCCGTAGCGGAAGAGCCGACCGCTGAGACAGAACAAGCAGAAGTTGCTGCTGAA","5.10","-4.50","19447","MQVILKEDVVNLGYKDDIVTVKDGYGRNFLIPQGKAVIASESAKKVLAENLRQRAHKIAQIKKEAEEKAASMQGISLTIKAKTSSTGTIFGSVTNIQIAEELAKKGVEVDRKIIVLKPAVKEVGNYTAVVRLHKEVTVEIPFEVVSENETIIEAKPEEAPVPVAEEPTAETEQAEVAAE","653803 654339"," This protein binds to 23S RNA.TIGR ID: PG0597","50S ribosomal protein L9","Cytoplasm","Numerous significant hits in gapped BLAST to 50S ribosomal protein L9; e.g. residues 1-149 are 37% similar to gb|AAC07793.1 ribosomal protein L09 of Aquifex aeolicus, residues 1-147 are 34% similar to gb|AAF27298.1|AF146075_4 ribosomal protein L9 of Thermus thermophilus, residues 1-147 are 31% similar to dbj|BAB07749.1 ribosomal protein L9 of Bacillus halodurans.This protein is similar to CT803, a predicted 50S ribosomal protein L9 from Chlamydia trachomatis.","
InterPro
IPR000244
Family
Ribosomal protein L9
PTHR21368\"[1-173]TRibosomal_L9
PF01281\"[1-48]TRibosomal_L9_N
PF03948\"[62-147]TRibosomal_L9_C
TIGR00158\"[1-147]TL9
SSF55653\"[56-148]TRibosomal_L9
InterPro
IPR009027
Domain
Ribosomal protein L9 N-terminal-like
SSF55658\"[1-55]TL9_N_like
noIPR
unintegrated
unintegrated
G3DSA:3.10.430.100\"[60-148]TG3DSA:3.10.430.100
G3DSA:3.40.5.10\"[1-59]TG3DSA:3.40.5.10


","BeTs to 12 clades of COG0359COG name: Ribosomal protein L9Functional Class: JThe phylogenetic pattern of COG0359 is ----yqvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB000244 (Ribosomal protein L9) with a combined E-value of 3.1e-39. IPB000244A 1-40 IPB000244B 84-100 IPB000244C 120-144","Residues 1-45 are 57% similar to a (PROTEIN RIBOSOMAL L9 50S) protein domain (PD003590) which is seen in RL9_MYCTU.Residues 79-147 are 42% similar to a (RIBOSOMAL PROTEIN 50S L9 RRNA-BINDING CHLOROPLAST BL17) protein domain (PD004232) which is seen in O67830_AQUAE.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Wed Mar 29 16:00:39 MST 2000","Thu Jan 4 13:17:19 2001","Thu Jan 4 13:17:19 2001","Thu Jan 4 13:17:19 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Thu Apr 6 18:11:13 MDT 2000","","-59% similar to PDB:1VS9 Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements. This file, 1VS9, contains the 50S ribosome subunit. 30S ribosome subunit is in the file 2I1C (E_value = 3.2E_21);-59% similar to PDB:2HGJ Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons. This entry 2HGJ contains 50S ribosomal subunit. The 30S ribosomal subunit can be found in PDB entry 2HGI. (E_value = 3.2E_21);-59% similar to PDB:2HGQ Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex. This entry 2HGQ contains 50S ribosomal subunit. The 30S ribosomal subunit can be found in PDB entry 2HGP. (E_value = 3.2E_21);-59% similar to PDB:2HGU 70S T.Th. ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A. This entry 2HGU contains 50S ribosomal subunit. The 30S ribosomal subunit can be found in PDB entry 2HGR. (E_value = 3.2E_21);-59% similar to PDB:2J01 STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME COMPLEXED WITH MRNA, TRNA AND PAROMOMYCIN (PART 2 OF 4). THIS FILE CONTAINS THE 50S SUBUNIT FROM MOLECULE I. (E_value = 3.2E_21);","","","Residues 1 to 55 (E-value = 2.7e-20) place PG0540 in the Ribosomal_L9_N family which is described as Ribosomal protein L9, N-terminal domain (PF01281)Residues 62 to 147 (E-value = 1.1e-15) place PG0540 in the Ribosomal_L9_C family which is described as Ribosomal protein L9, C-terminal domain (PF03948)","","34540405","","","Schnier,J., Kitakawa,M. and Isono,K. 1986. The nucleotide sequence of an Escherichia coli chromosomal region ontaining the genes for ribosomal proteins S6, S18, L9 and an open reading frame. Mol. Gen. Genet. 204 (1): 126-132. PubMed: 3528756.","","Wed Mar 29 16:00:39 MST 2000","1","","","PG0597" "PG0541","654618","656570","1953","ATGAAAAAACTACCGGTCAAGAGGCTCTACCTTTTCATGCTACAGACTTTTCTGCCACTCCTGCTGATGACTTTTGCCATCTGTTGGTTTGTGGTTTTGATGCAGTTTCTGTGGAAATATGTGGACGACATGGTCGGCAAAGGACTGAGTGCCATCATCTTGTCCAAGATGCTTTTCTACGCAGCCATGACCTTGGTTCCCATGGCACTCCCGCTGGGTGTCCTGTTGGCCTCATTGATGACCTTCGGAAATTTGGGCGAACGCTTGGAATTGCTCGCCATGAAGTCGGCCGGAGTACCGCTCTACCGCATCATGAAACCTCTTTTCTTCTCTGTGGTAGCCATTGCTTGCGGGCTTTTCATCTTTCAGAACGATCTGATGATCCAGTCCCAAGTGAAATTCTACACGATCCTGTTTTCTGCGAGAAGGGCGACTCCGGAACTGGAAATTCCCGAAGGTTCTTTCTACAATGGTATTCGTGGGTACAATCTCTTTGTAGCCAAGAAAGATCGCCGCACGGGAATGCTCCACGACATGATGATCTATGACCACTCTCAAGGGTTTGCCGATGCCCGGATTATTGTCGCTGACAGCGGCAAGCTGAAGATGGATGAGGGCAAAACATTCCTTACCCTCATGCTCCACTCCGGCGAAACGTTCCAAAATCTCCGCTCGCAACAGACGGAAAGCAATGCCCCCACACCGTACATGCGCGAACGTTTCCGTACAAAAGAGATCGTCATCCCCTTCGATGCCAACTTCAGTCTGATGGATGAAGGAGCTATGCGTGGGGAATATGTGGGCAAGAACCTGATCCAGTTGCAACGATTCATAGACACCGTCACTCTCCGTGTCGATAGTGCTTCGTTCCGAAATGCGAACAATCTATATATCCAGACCTACAACGCCCGCTATGCGACATCGCCGCTTTCTCCTCTCGATACATCGGCAATTTCGATTGCCTACAGAACTAAAATAGAGCAGGCTGCCAAGGCAATACCGACAACGCTGGACAGCATAGAGAGCAGATCGACCCTTTCGCAGCGTTTGGAAGCCCGATCCGTAATGATAAACCGATTCGACACCTACATCGGCGAATGCATGATCATGAAAGAATCCACCGCATTCGAAAGAGACAGACGTATCTCCCATATGAGGGAGTGGCACACCAAGTTTACCTATCCGGTAGCCTGCCTGATCTTTTTCTTTATCGGTGCGCCATTGGGTGCTATCATACGAAAAGGAGGACTCGGCACGCCTATTGTGGCATCGGTGCTTTTCTTTGTTCTCTATTATATGGTAGATACCTTTGGTGTTAAGATGGCCAAGACCGAAGAGTGGCCTGTCTGGTTGGGAATGTGGCTGAGCACTTTTGTGTTAGTGCCGTTTGGCTTTTTCCTGACCTATAAGGCTACACGCGACTCCTCTACGCTAAATGTGGATACCTATGTGAACTGGATCAAACGTGTCTTCAGACCTCAACGGCTACGCCTGCTGGAAAGGAAAGAGCTTGTAGTCGAAGAGGCAGACTATGAATACGCTTTGGGTGAAATAGCCAATGTCCGCTCTGATGCACAGCAAATGCTCGGTTCGCGAATCATGAGCCGCCCGCTCCCCTTCATCTGGCTGTTTGGCGGTGATCTATCCTCGCAAAAGGAACTCAGTGTCCGCGTAGATACTATGGTGGAATACCTCCATAATACCACCGACAACCTCATTTTTGCCAAGCTGATGGATGTACCTCCGCTGCCCACTACTCTTTCGCACTGGTTACCCAAGGACAAACGATCGGGCATCGCTCTGGGACTACTCCTGCCGATCTCTCTCCCGATGCTCATATACCTCGGAAGCCGGCGCAAACTATTGAAAGAAGAACTGCATACGTTGATCAAGACGTGTGACGAATTGGAAGAAATAATCAACAAGAAAAAATACAAACCAAATCATATAAAG","10.20","18.97","74687","MKKLPVKRLYLFMLQTFLPLLLMTFAICWFVVLMQFLWKYVDDMVGKGLSAIILSKMLFYAAMTLVPMALPLGVLLASLMTFGNLGERLELLAMKSAGVPLYRIMKPLFFSVVAIACGLFIFQNDLMIQSQVKFYTILFSARRATPELEIPEGSFYNGIRGYNLFVAKKDRRTGMLHDMMIYDHSQGFADARIIVADSGKLKMDEGKTFLTLMLHSGETFQNLRSQQTESNAPTPYMRERFRTKEIVIPFDANFSLMDEGAMRGEYVGKNLIQLQRFIDTVTLRVDSASFRNANNLYIQTYNARYATSPLSPLDTSAISIAYRTKIEQAAKAIPTTLDSIESRSTLSQRLEARSVMINRFDTYIGECMIMKESTAFERDRRISHMREWHTKFTYPVACLIFFFIGAPLGAIIRKGGLGTPIVASVLFFVLYYMVDTFGVKMAKTEEWPVWLGMWLSTFVLVPFGFFLTYKATRDSSTLNVDTYVNWIKRVFRPQRLRLLERKELVVEEADYEYALGEIANVRSDAQQMLGSRIMSRPLPFIWLFGGDLSSQKELSVRVDTMVEYLHNTTDNLIFAKLMDVPPLPTTLSHWLPKDKRSGIALGLLLPISLPMLIYLGSRRKLLKEELHTLIKTCDELEEIINKKKYKPNHIK","654618 656570","TIGR ID: PG0598","conserved hypothetical protein (possible permease)","Inner membrane, Cytoplasm","No significant hits in gapped BLAST other than a strong similarity to BT2417.","
InterPro
IPR005495
Family
Predicted permease YjgP/YjgQ
PF03739\"[9-476]TYjgP_YjgQ


","BeTs to 7 clades of COG0795COG name: Predicted permeasesFunctional Class:� RThe phylogenetic pattern of COG0795 is ------vCE--HUJ--OLINxNumber of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Dec 17 10:56:11 2003","Wed Dec 17 10:56:11 2003","Wed Dec 17 10:56:11 2003","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Dec 17 10:56:11 2003","No significant hits to the PDB database (E-value < E-10).","","","Residues 9 to 476 (E-value = 1e-17) place PG0541 in the YjgP_YjgQ family which is described as Predicted permease YjgP/YjgQ family (PF03739)","","34540406","","","","","","1","","","PG0598" "PG0542","656576","657790","1215","ATGGAAGAAATCAAGCTGAATACTATTGAAGAAGCCCTGGAAGACTTCAAGGAAGGTAAGTTCCTGATCGTCGTGGATGATGAAGATCGTGAAAATGAAGGCGACTTTATCATCGCAGCGGAGAAGATAACGCCGGATAAAGTGAACTTCATGATGCACCACGGCCGCGGCGTCCTCTGCGCTCCCATATCCGAAGAGCGTGCTCACGAGCTGGAGCTGGAGATGCAAGTGCCGGACAATACCTCGGTACACGAGACTCCCTTTACCGTTACGGTAGACCGCCTCGGCAATGGCTGTACCACGGGTGTTTCCATGTACGACCGTGCACAGACGATTTTGGCTCTGGCCGATCCCAACACACGTCCGTCGGATTTGGGACGTCCGGGGCATATCTGCCCACTCCGTGCGCGCAGCCGTGGTGTTCTGCGTCGGGCAGGACACACGGAAGCGGCTGTGGATTTGGCACGTCTATGCGGCATGCAACCGGCTGCAGCCCTCATAGAGATTATCAATGAGGACGGTACCATGGCACGTTTGCCACAGCTATGGGAGGTCTCCAAGCGTTTTGGACTGAAGATCATTGCCATCAAAGATCTGATAGCCTACCGCCTCAAACAAGAATCCATCGTAGAAAAGGGTGTAGAAGTGGATATGCCTACCGAATACGGACACTTCCGACTCATACCTTTCCGTCAAAAATCCAATGGACTGGAGCACATAGCTTTGTTCAAGGGGACGTGGGACGAAAATGAACCGATACTCGTTCGTATGCACTCATCCTGTGCCACTGGCGACATATTCGGATCTATGCGTTGTGACTGTGGCGGCCAATTACTGCAAGCAATGGAGAAGATCGAGAAAGAAGGCAAAGGAGCTATCATCTATCTGAATCAGGAAGGCCGCGGTATCGGCCTGATGGAAAAGATGAAAGCTTATAAGCTACAGGAACAGGGTATGGATACGATAGACGCCAACCTCTGCCTCGGACACAAAGCCGATGAACGTGATTATGGCATAGGCGCCCAAATTCTGCGTCTTTTGGGTATCAAGAAAATGCGCTTGATGACAAACAACCCGGTCAAACGTATCGGACTGGAAGCTTTCGGCTTGGAGATCGTAGAAAATATCCCCCTGGAAACTGCCCCAAATCGCTACAACGAGTTCTATCTGCGCACCAAGAAAGAACGTATGGGGCACGAGCTGCACAACATCAAA","6.00","-7.44","45568","MEEIKLNTIEEALEDFKEGKFLIVVDDEDRENEGDFIIAAEKITPDKVNFMMHHGRGVLCAPISEERAHELELEMQVPDNTSVHETPFTVTVDRLGNGCTTGVSMYDRAQTILALADPNTRPSDLGRPGHICPLRARSRGVLRRAGHTEAAVDLARLCGMQPAAALIEIINEDGTMARLPQLWEVSKRFGLKIIAIKDLIAYRLKQESIVEKGVEVDMPTEYGHFRLIPFRQKSNGLEHIALFKGTWDENEPILVRMHSSCATGDIFGSMRCDCGGQLLQAMEKIEKEGKGAIIYLNQEGRGIGLMEKMKAYKLQEQGMDTIDANLCLGHKADERDYGIGAQILRLLGIKKMRLMTNNPVKRIGLEAFGLEIVENIPLETAPNRYNEFYLRTKKERMGHELHNIK","656573 657790","TIGR ID: PG0599","GTP cyclohydrolase II /3,4-dihydroxy-2-butanone-4-phoshate synthase","Cytoplasm","Numerous significant hits in gapped BLAST to GTP cyclohydrolase II / 3, 4-dihydroxy-2-butanone 4-phosphate synthase protein; e.g. residues 2-399 are 55% similar to sp|O66679|GCH2_AQUAE GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphase synthase of Aquifex aeolicus, residues 1-402 are 55% similar to dbj|BAB05275.1 GTP cyclohydrolase II / 3, 4-dihydroxy-2-butanone 4-phosphate synthase of Bacillus halodurans, residues 9-402 are 53% similar to gb|AAA67483.1 ribA gene product of Bacillus subtilis.This sequence is similar to BT2416.","
InterPro
IPR000422
Domain
3,4-Dihydroxy-2-butanone 4-phosphate synthase
PD003034\"[9-207]TDHBP_synthase
PF00926\"[9-205]TDHBP_synthase
TIGR00506\"[5-203]TribB
InterPro
IPR000926
Domain
GTP cyclohydrolase II
PF00925\"[210-378]TGTP_cyclohydro2
TIGR00505\"[211-401]TribA
noIPR
unintegrated
unintegrated
G3DSA:3.90.870.10\"[6-216]TG3DSA:3.90.870.10
PIRSF001259\"[1-405]TRibA
PTHR21327\"[36-368]TPTHR21327
PTHR21327:SF1\"[36-368]TPTHR21327:SF1
SSF55821\"[3-207]TSSF55821


","BeTs to 7 clades of COG0108COG name: 3,4-dihydroxy-2-butanone 4-phosphate synthaseFunctional Class: HThe phylogenetic pattern of COG0108 is Amt-yqvcebRhuj----in-Number of proteins in this genome belonging to this COG is 1","***** PF00926 (3,4-dihydroxy-2-butanone 4-phosphate synthase) with a combined E-value of 4.2e-71. PF00926A 10-51 PF00926B 71-111 PF00926C 124-175***** PF00925 (GTP cyclohydrolase II) with a combined E-value of 1.2e-65. PF00925A 210-225 PF00925B 235-247 PF00925C 256-275 PF00925D 291-333 PF00925E 352-362 PF00925F 389-399","Residues 207-353 are 55% similar to a (GTP CYCLOHYDROLASE II HYDROLASE) protein domain (PD003336) which is seen in O66679_AQUAE.Residues 354-399 are 56% similar to a (GTP CYCLOHYDROLASE HYDROLASE II) protein domain (PD153000) which is seen in O66679_AQUAE.Residues 9-203 are 54% similar to a (GTP CYCLOHYDROLASE SYNTHASE HYDROLASE) protein domain (PD003034) which is seen in O66679_AQUAE.","","Thu Jun 14 11:22:18 MDT 2001","","Thu Jun 14 11:22:18 MDT 2001","Thu Jun 14 11:22:18 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:22:18 MDT 2001","Thu Jun 14 11:22:18 MDT 2001","","","Thu Jan 4 13:26:37 2001","Wed Dec 17 10:26:38 2003","Thu Jan 4 13:26:37 2001","Wed Jun 20 09:07:07 MDT 2001","Wed Jun 20 09:07:07 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Apr 20 12:54:47 MDT 2001","-69% similar to PDB:1TKS Crystal structure of 3,4-Dihydroxy-2-butanone 4-phosphate Synthase of Candida albicans (E_value = 2.4E_49);-69% similar to PDB:1TKU Crystal Structure of 3,4-Dihydroxy-2-butanone 4-phosphate Synthase of Candida albicans in complex with Ribulose-5-phosphate (E_value = 2.4E_49);-66% similar to PDB:1G57 CRYSTAL STRUCTURE OF 3,4-DIHYDROXY-2-BUTANONE 4-PHOSPHATE SYNTHASE (E_value = 3.1E_49);-66% similar to PDB:1G58 CRYSTAL STRUCTURE OF 3,4-DIHYDROXY-2-BUTANONE 4-PHOSPHATE SYNTHASE GOLD DERIVATIVE (E_value = 3.1E_49);-66% similar to PDB:1IEZ Solution Structure of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase of Riboflavin Biosynthesis (E_value = 3.1E_49);","","","Residues 9 to 205 (E-value = 1.9e-103) place PG0542 in the DHBP_synthase family which is described as 3,4-dihydroxy-2-butanone 4-phosphate synthase (PF00926)Residues 208 to 378 (E-value = 9.5e-96) place PG0542 in the GTP_cyclohydro2 family which is described as GTP cyclohydrolase II (PF00925)","Wed Dec 17 10:26:38 2003","34540407","","","","","","1","","","PG0599" "PG0543","658641","659678","1038","ATGATGGAAAAATGTATCTTTGCTCACTATCCACATAACCTTGTGTTCATGATTCGCAAGCATTTCGGTATCATTTTGGGATTTCTTTCTCTTGTGTTTTCGGCAGGTGCTCAACAAGAGAAGCAGGTGTTTCATTTTCTGAACCTTCCGGCTACTGCACAGGCTTTGGCTGCCGGAGGCAAAGCTATCACCATCGTAGACGACAATCCCGGACTGGCTTTTGAGAATCCGGCTCTGCTCGGATATGAATCCGGTGGCCGCGCCTTTCTTTCCTATTTATATTATATGAGTGGTTCGCATATGGGCAATGCCTGTTATGCCTCGTCCGTCGGAGAGCGTGGCATGTGGGGTGTTGGCATGCGTTTCCTGAACTACGGGTCTATGCAAGGATACGATCAGAATGCGATTGCCACCGGCTCTTTTAGTGCTTCGGATATAGCTGTACAAGGATTTTACAGCCATGAACTGAGCAACCACTTCCGCGGTGGAGTCAGCCTAAAAGCATTGTATTCTTCTATCGAGACGTATAGTTCCTTTGGCCTTGGTGTGGATGTCGGTATCAGTTATTACGACGATGACAAAGGATATTCCGCTTCCGCTCTGTTCAAGAACGTAGGGGCGCAACTGAAAGGCTATAATGAAGAACGGGAACCGCTCGATTGGGATTTCCAGCTCGGCTTTTCCCGCAGTTTTATCAATGCTCCGTTTCGCTTGCACATCACGTTGTTCAATCTGAATCCGCACTATTTCAAGCGTCTTGTACCACGCGATCTGTCCAAGATGCAAAAGTTCCTCCGACACTTCTCGATAGGAGCAGAATTTACTCCTTCCGAGAGGTTTTGGGTCGGGCTGGGATATACGCCACAGATTGCACAGGATTTCGAGGTGGAAGGCGGCAACAAATGGGGAGGTCTTTCGGCCGGCGTCGGTTTCACTTCAGGTGTAGTACGTGTAGGCGTATCTGCTGCCACCTATCATCCTGCAGCTCTTTCGTTCATGTGTTCGGTAGGTATCCGTTTGGACGATAAGAGCATCTTC","7.40","1.51","38060","MMEKCIFAHYPHNLVFMIRKHFGIILGFLSLVFSAGAQQEKQVFHFLNLPATAQALAAGGKAITIVDDNPGLAFENPALLGYESGGRAFLSYLYYMSGSHMGNACYASSVGERGMWGVGMRFLNYGSMQGYDQNAIATGSFSASDIAVQGFYSHELSNHFRGGVSLKALYSSIETYSSFGLGVDVGISYYDDDKGYSASALFKNVGAQLKGYNEEREPLDWDFQLGFSRSFINAPFRLHITLFNLNPHYFKRLVPRDLSKMQKFLRHFSIGAEFTPSERFWVGLGYTPQIAQDFEVEGGNKWGGLSAGVGFTSGVVRVGVSAATYHPAALSFMCSVGIRLDDKSIF","658641 659678","TIGR ID: PG0602","conserved hypothetical protein","Outer membrane, Extracellular","Its nearest neighbor in the NR database is gi:48853585 from Cytophaga hutchinsonii.","
noIPR
unintegrated
unintegrated
SSF56925\"[174-311]TSSF56925
SSF56935\"[42-203]TSSF56935


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Mar 3 13:15:27 2005","Thu Mar 3 13:15:27 2005","Thu Jan 4 13:31:10 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 3 13:15:27 2005","-44% similar to PDB:1EKB THE SERINE PROTEASE DOMAIN OF ENTEROPEPTIDASE BOUND TO INHIBITOR VAL-ASP-ASP-ASP-ASP-LYS-CHLOROMETHANE (E_value = );","","","No significant hits to the Pfam 11.0 database","","34540408","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Thu Mar 3 13:15:27 2005","","1","","","PG0602" "PG0544","659711","660403","693","ATGACTGATCCGATCATTATTGCCATCGATGGGCATAGCTCATGCGGGAAAAGTACCATGGCCAAGGATTTGGCTCGTGCCATCGGTTATATATATGTCGATACCGGTGCGATGTATCGTGCCGTAACGTTGTACTCCATTCGCCGGGGGCTGTGGAAGGACGGAGTTCTCGATACAGAGACTTTGCGGAACGAGATGTCCGATGTCCGGATTACTTTCCGGCTCAATGCGGAGACGGGACTGCCGGAGACATACTTGAACGGAGAGAATGTAGAGCAGGATATTCGCAGCATGGAAGTCTCTGCCAAAGTCAGCCCGATCGCCACGCTTGATTTTGTACGCGAAGCAATGGTGCGTGAGCAGCAAGCCATGGGTAAGAGCAAAGGCATCGTAATGGATGGCCGTGATATAGGCACTACGGTTTTCCCTGAAGCGGAAATGAAGATATTCGTGACGGCCCTGCCGCATGTGCGTGCACAGCGCCGCTTGGACGAATTGCGTGCCAAGGGTGATGCAACCACTACTTTCGACGACGTACTGGCCAATATAGAAGAGCGCGACAGGATCGACTCCACACGTGCCGTTTCACCTTTGAGACAGGCTGAGGATGCTTTAGTGCTGGACAATTCTCATATGACCATTCCGCAGCAGAAGGCATGGTTGCTGGAGCGTTTTCAGGAAGTGACCGGTTCA","5.00","-6.31","25827","MTDPIIIAIDGHSSCGKSTMAKDLARAIGYIYVDTGAMYRAVTLYSIRRGLWKDGVLDTETLRNEMSDVRITFRLNAETGLPETYLNGENVEQDIRSMEVSAKVSPIATLDFVREAMVREQQAMGKSKGIVMDGRDIGTTVFPEAEMKIFVTALPHVRAQRRLDELRAKGDATTTFDDVLANIEERDRIDSTRAVSPLRQAEDALVLDNSHMTIPQQKAWLLERFQEVTGS","659711 660403","TIGR ID: PG0603","cytidylate kinase","Cytoplasm","Numerous significant hits in gapped BLAST tocytidylate kinase protein; e.g. residues 1-227 are 40% similar to gbAAC83961.1 cytidine monophosphate kinase of Bacillus subtilis, residues 1-231 are 40% similar to embCAB08279.1 Cmk of Mycobacterium leprae, residues 6-223 are 42% similar to embCAB10969.1 cmk of Mycobacterium tuberculosis .","
InterPro
IPR003136
Family
Cytidylate kinase
PTHR21299:SF2\"[17-227]TCytidylate_kin
TIGR00017\"[3-225]Tcmk
InterPro
IPR011769
Domain
Adenylate/cytidine kinase, N-terminal
PD000657\"[6-41]TAdenylate_kin
InterPro
IPR011994
Domain
Cytidylate kinase region
PF02224\"[65-223]TCytidylate_kin
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[5-227]TG3DSA:3.40.50.300
PTHR21299\"[17-227]TPTHR21299
SSF52540\"[2-231]TSSF52540


","BeTs to 11 clades of COG0283COG name: Cytidylate kinaseFunctional Class: FThe phylogenetic pattern of COG0283 is -----qvcebrH--gpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB000623 (Shikimate kinase) with a combined E-value of 1e-07. IPB000623A 7-40 IPB000623B 138-155","Residues 74-216 are 44% similar to a (KINASE CYTIDYLATE CMP CK) protein domain (PD005731) which is seen in KCY_ECOLI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Mar 22 15:00:42 MST 2000","Thu Jul 24 14:39:02 2008","Thu Jan 4 13:35:31 2001","Wed May 23 11:30:52 MDT 2001","Wed May 23 11:30:52 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Jul 24 14:39:02 2008","-60% similar to PDB:1Q3T Solution structure and function of an essential CMP kinase of Streptococcus pneumoniae (E_value = 1.4E_36);-60% similar to PDB:1CKE CMP KINASE FROM ESCHERICHIA COLI FREE ENZYME STRUCTURE (E_value = 1.1E_33);-60% similar to PDB:1KDO CYTIDINE MONOPHOSPHATE KINASE FROM E. COLI IN COMPLEX WITH CYTIDINE MONOPHOSPHATE (E_value = 1.5E_33);-60% similar to PDB:1KDP CYTIDINE MONOPHOSPHATE KINASE FROM E. COLI IN COMPLEX WITH 2'-DEOXY-CYTIDINE MONOPHOSPHATE (E_value = 1.5E_33);-60% similar to PDB:1KDR CYTIDINE MONOPHOSPHATE KINASE FROM E.COLI IN COMPLEX WITH ARA-CYTIDINE MONOPHOSPHATE (E_value = 1.5E_33);","","","Residues 65 to 223 (E-value = 9.1e-53) place PG0544 in the Cytidylate_kin family which is described as Cytidylate kinase (PF02224)","Wed May 23 11:30:52 MDT 2001","34540409","","","","","","1","","","PG0603" "PG0545","660403","661269","867","ATGATTCCAATAGAAATAGACAGCGGATCGGGATTTTGCTTCGGTGTGGTGAATGCTATTCGTCATGCCGAGAAGCAATTGGAGAAAAGCTCCGATAAGCTTTACTGCCTGGGCGATATTGTACACAATACGCTGGAGGTCGAACGGTTAGGAAAGAAAGGATTGGAGACGATCGATTACGATGCTTTTTCCCGACTGCGTGGGGCAAAGGTACTGTTGCGTGCCCATGGAGAACCTCCCGAAATCTATCGGATGGCAGGAGAAAATGGGGTAACGATCATAGATGCCACCTGTCCTGTTGTACTCCGCTTGCAAAACAAAATCAAATCACGATACGAAGCTACGCGCAGCCTCGGCGCACAAGTCGTCATCTATGGCAAAAGAGGGCATGCGGAAGTAAACGGTCTGGTCGGGCAGACCGAAGGAACGGCTATCGTCATAGAGAGCGAGGAGGAGCTGGACAAAATAGATTACACACGTCCTGTCATTCTCTTTTCCCAAACGACCAAGAGCCTGGAGGGATTCGGGCAGATCATCGACAGCATCAGCACACGTATGCAGCCGGGTGTAACTTTCGAGCATCACGATACCATCTGTCGCCAAGTGGCCAATCGAATCCCGCATATCGGAGCTTTCGCCACTGCACACGAACTGGTGTTCTTCGTAGCCGGAGAGAAAAGCTCCAACGGGAAGGTACTCTTCGGGCATTGTCTGGCAGCCAATCCGCGCAGTATCTTTATTTCCTCCCCGGAGGTCATCGTGCCGGATATGCTGGTTCCTCTGCCGGCCAGCATAGGCATCTGCGGAGCCACCTCTACGCCCCGATGGCAGATGGAAGAGGTGGCATCGCACATCAAGGCTCTATTG","6.70","-1.86","31579","MIPIEIDSGSGFCFGVVNAIRHAEKQLEKSSDKLYCLGDIVHNTLEVERLGKKGLETIDYDAFSRLRGAKVLLRAHGEPPEIYRMAGENGVTIIDATCPVVLRLQNKIKSRYEATRSLGAQVVIYGKRGHAEVNGLVGQTEGTAIVIESEEELDKIDYTRPVILFSQTTKSLEGFGQIIDSISTRMQPGVTFEHHDTICRQVANRIPHIGAFATAHELVFFVAGEKSSNGKVLFGHCLAANPRSIFISSPEVIVPDMLVPLPASIGICGATSTPRWQMEEVASHIKALL","660367 661269","Of interest: Potter, S., X. Yang, M.J. Boulanger, E.E. Ishiguro. 1998. Occurrence of homologs of the Escherichia coli lytB gene in gram-negative bacterial species. J.Bacteriol. 180:1959-1961. PubMed: 9537400.TIGR ID: PG0604","penicillin tolerance protein","Cytoplasm","Numerous hits using gapped BLAST to penicillin tolerance proteins from, e.g., Aquifex aeolicus ( gi7445056), Chlamydia muridarum (gi7190288), Bacillus subtilis (gi1731004), among others.This protein is similar to CT859, a predicted penicillin tolerance (LytB) protein from Chlamydia trachomatis.","
InterPro
IPR003451
Family
LytB protein
PF02401\"[4-288]TLYTB
TIGR00216\"[3-288]TispH_lytB


","BeTs to 9 clades of COG0761COG name: Penicillin tolerance protein LytBFunctional Class: MThe phylogenetic pattern of COG0761 is -----qvcebRhuj---lin-Number of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","Residues 2-288 are 30% similar to a (PROTEIN LYTB HOMOLOG METALLOPROTEASE PROTEASE PENICILLIN) protein domain (PD005867) which is seen in O67625_AQUAE.","","Thu Jun 14 11:23:30 MDT 2001","","Thu Jun 14 11:23:30 MDT 2001","Thu Jun 14 11:23:30 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:23:30 MDT 2001","Thu Jun 14 11:23:30 MDT 2001","","Tue Jul 17 14:55:42 2007","Thu Mar 30 17:16:52 MST 2000","Tue Jul 17 14:55:42 2007","Thu Jan 4 13:37:23 2001","","Wed Jun 20 09:00:51 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Mon Apr 10 14:43:03 MDT 2000","Tue Jul 17 14:55:42 2007","-47% similar to PDB:1HTY GOLGI ALPHA-MANNOSIDASE II (E_value = );-47% similar to PDB:1HWW GOLGI ALPHA-MANNOSIDASE II IN COMPLEX WITH SWAINSONINE (E_value = );-47% similar to PDB:1HXK GOLGI ALPHA-MANNOSIDASE II IN COMPLEX WITH DEOXYMANNOJIRIMICIN (E_value = );-47% similar to PDB:1PS3 Golgi alpha-mannosidase II in complex with kifunensine (E_value = );-47% similar to PDB:1QWN GOLGI ALPHA-MANNOSIDASE II Covalent Intermediate Complex with 5-fluoro-gulosyl-fluoride (E_value = );","","","Residues 4 to 288 (E-value = 5.6e-32) place PG0545 in the LYTB family which is described as LytB protein (PF02401)","Wed Jun 20 09:00:51 MDT 2001","34540410","","","Gustafson, C.E., S. Kaul, E.E. Ishiguro. 1993. Identification of the Escherichia coli lytB Gene, which is involved in penicillin tolerance and control of the stringent response. J.Bacteriol. 175:1203-1205. PubMed: 8432714.Harkness, R.E., W. Kusser, B.J. Qi, E.E. Ishiguro. 1992. Genetic mapping of the lytA and lytB loci of Escherichia coli, which are involved in penicillin tolerance and control of the stringent response. Can.J.Microbiol. 38:975-978. PubMed: 1464070.","","Tue Jul 17 14:55:42 2007","1","","","PG0604" "PG0546","662497","661259","1239","TTGAGCCCCCGTGTTTCGGAGGGTTTCGAGGTGATAGCCCACCCTTCGCTAAGGGTTTGTAGAAGCAACCACAGCGGCAAAGATAAGCGTTTTGGCCAATCTATCAAACACTTAGCTCTCCGAAGCCTCTCTAAGGCTCCACCGAAACCTCCGGATAAATGGACAGGACTCACTACCTTTGGGGTGATGAAAAAGATCATGAAGACTATCATTCCCTCCATCGGTATCGCTGTCGTATCGGGAGGTTTCGCCCCTCATCCGAAGCCGGTTTCATTCCGAGTAATGACCTACAATGTCGAGAACCTGTTCGACTGTTACGACGATATCGGCAAGGACGACAGTGAGTTTCTCCCCGAGGGAAAACTGAGGTGGACGCAGAGCCGCTACAACCGCAAGCTCAAGCAGGTGGCTTCGGTGATCAAGGCTGTAGGTGGCCCCGATTGGCCGGCACTGGTGGCTCTTGTAGAGGTGGAAAACGATACGGTCATGAACAACCTGCTGAGCCGTACTCCCCTCGGCAAACAGAGCTACCGCTACGTGATGACGAACAGCCCGGACAAGCGCGGCATAGACGTAGCCCTGCTCTATCGACCGGAGCTGTTCAGTCTGGATCACAAAGAAGAGTATAGAGTACATTTTCGCGGCGAGAGGAACAGACGAACGAGGAATATCCTGCATGCACAGGGGCGATTGGCCGGCGGCGACACGCTGGATGTATTCGTCTGCCACTTCCCCTCTCGCAGAGGAGGTGTGCGCCAATCGGATGCCTATCGGCACGATGCCGCCACTCTGCTGAGAACGAAATGCAATGAGATACTAAGCCGCCGGCACAATCCCTTCATCCTGATCATGGGAGACCTGAACAGCAATCCGGACGAATCCCCTCTGATCGAGACCTTACGGGCCGGTACGGTTCTGCCCGAAGCCGGCAAAGCCGGAGCAGGGGAGTTGTACAACCTCTCGGGCTGTCCTCTCTCTCAGATCCCTCCCGGGACAACTCTGTATAAGGGTAAGTGGGAGCAGTTGGATCACATCATCGTGTCGGGCAATTTCCTGAAGCCGGATTCACGGGTCAGCTACCGAACCGGATCGGCCAAGAATGTAGTCCTGCCTTATTTGGTACACTCCGCTCCGTACAATGTGGCGCGTATCGCACCCAATCGCACCTATCAGGGGATGCATTATAAAGGAGGATATAGCGACCACTTGCCGGTGGCGGCCGAGTTTACAATAGAGCCT","10.40","20.14","46115","LSPRVSEGFEVIAHPSLRVCRSNHSGKDKRFGQSIKHLALRSLSKAPPKPPDKWTGLTTFGVMKKIMKTIIPSIGIAVVSGGFAPHPKPVSFRVMTYNVENLFDCYDDIGKDDSEFLPEGKLRWTQSRYNRKLKQVASVIKAVGGPDWPALVALVEVENDTVMNNLLSRTPLGKQSYRYVMTNSPDKRGIDVALLYRPELFSLDHKEEYRVHFRGERNRRTRNILHAQGRLAGGDTLDVFVCHFPSRRGGVRQSDAYRHDAATLLRTKCNEILSRRHNPFILIMGDLNSNPDESPLIETLRAGTVLPEAGKAGAGELYNLSGCPLSQIPPGTTLYKGKWEQLDHIIVSGNFLKPDSRVSYRTGSAKNVVLPYLVHSAPYNVARIAPNRTYQGMHYKGGYSDHLPVAAEFTIEP","662497 661259","TIGR ID: PG0605","conserved hypothetical protein","Periplasm, Cytoplasm","Its nearest neighbor in the NR database is gi:29347026 from Bacteroides thetaiotaomicron VPI-5482.","
InterPro
IPR005135
Domain
Endonuclease/exonuclease/phosphatase
PF03372\"[92-409]TExo_endo_phos


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Mar 3 13:18:33 2005","Thu Mar 3 13:18:33 2005","Thu Jan 4 13:38:51 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 3 13:18:33 2005","No significant hits to the PDB database (E-value < E-10).","","","Residues 92 to 409 (E-value = 4.9e-13) place PG0546 in the Exo_endo_phos family which is described as Endonuclease/Exonuclease/phosphatase family (PF03372)","","34540411","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Thu Mar 3 13:18:33 2005","","1","","","PG0605" "PG0547","662693","663052","360","TTGGTCGTACAATCGGACGGCAGCCCAGAGGCTGCTTCGTACACGCTGATCCACTTCTGGGCGGCATACGATGGAGAGAGCAGGGCCGGTAATGTCCGATGGTCTCGTTATTTTGCCAAAAGACCCGACAGTCGGGTACGGTATGTAGGTGTTTCGATGGACAAAAACCTGTCGGTATTCACAAATACCTTGGCTTTCGACCAAATAGACTTGTCTGCCCAGCGACTGGTGGAAAATAGTAAACGCGATCAAATGCTCAACATCTATGGCTTGAAGATCCGTTTCCACAGTTACCTGGTGGACGCACATGGGATTATACGGGCAGTAGATCCGAATCCCGATCAACTGGAGACAATTCTC","7.80","0.71","13662","LVVQSDGSPEAASYTLIHFWAAYDGESRAGNVRWSRYFAKRPDSRVRYVGVSMDKNLSVFTNTLAFDQIDLSAQRLVENSKRDQMLNIYGLKIRFHSYLVDAHGIIRAVDPNPDQLETIL","662561 663052","TIGR ID: PG0607","hypothetical protein","Outer membrane, Periplasm, Cytoplasm","No significant hit in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 12:50:29 MDT 2001","","Thu Jun 14 12:50:29 MDT 2001","Thu Jun 14 12:50:29 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:50:29 MDT 2001","Thu Jun 14 12:50:29 MDT 2001","","","Thu Jan 4 13:40:12 2001","Thu Jan 4 13:40:12 2001","Thu Jan 4 13:40:12 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Jun 14 12:50:29 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Jun 20 08:57:43 MDT 2001","34540413","","","","","","1","","","PG0607" "PG0548","663123","663413","291","GTGAATACATCGGAGCTGCCCTGCTTACCACTGCTGCCACCTTCTCCGGACGTATCCACAGCAGAGCCATCGGCTATCTCTCCCAAAAAACTTCTTGAAAACACCTTCGAAAATTCAAAGAGACCACAAAAGGGTAGCTGTAAATACAATTACTCACTCAAAAATCATGCGCCAAAAAAGTTTTCAACAACGAAGACGAGTTTGGGACGATTCCAAATAAGCATCCGTGGAGAAGAAAAAAGCAAGGTAAAAGTGCAGGGAAAAGGAACTTTTACAGATCGAAATACCACT","10.60","9.13","10694","VNTSELPCLPLLPPSPDVSTAEPSAISPKKLLENTFENSKRPQKGSCKYNYSLKNHAPKKFSTTKTSLGRFQISIRGEEKSKVKVQGKGTFTDRNTT","663123 663413","TIGR ID: PG0609","hypothetical protein","Periplasm","No significant hits in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Fri Jun 15 12:33:50 MDT 2001","","Fri Jun 15 12:33:50 MDT 2001","Fri Jun 15 12:33:50 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 12:33:50 MDT 2001","Fri Jun 15 12:33:50 MDT 2001","","","Mon Jan 8 14:45:36 2001","Thu Jan 4 13:41:25 2001","Thu Jan 4 13:41:25 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Jun 14 12:51:22 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Jun 20 08:53:08 MDT 2001","34540415","","","","","","1","","","PG0609" "PG0549","664114","663698","417","GTGACTCTGTATTTACAAGTCTGCCGCCAATGTGCTTGGTGGATTTTCGCCGTTTTTCATAAGATGGTTTCTATACAGTTGTTTTTCGGCCACAATGTAGAAAATGAATTTAAATTATGCAAATATTTCCCCCAAAAATTGCATCATGCAGATTATACCCTGAAGTGCAATAGCCGTTGGTGGGAGAAAAAAGATTTGGCTAATTTTGTCTTGCTGAAAAGCATTGCTCCGAACAGTGGATTCCCCCGTGTATTGGAAGCGAGCAATAAATTGAAAAAGAGAATATTATATAGAATGCTACACATCCATAAACCACCGACCATGACCGATCATGACCGATCATCCGGCATCAAGCCCGAACAGGCTCCTATTCGGATATTCCGGCACAGCAATAGCCCCCGATCCGATCCGAGATTG","10.80","14.72","16517","VTLYLQVCRQCAWWIFAVFHKMVSIQLFFGHNVENEFKLCKYFPQKLHHADYTLKCNSRWWEKKDLANFVLLKSIAPNSGFPRVLEASNKLKKRILYRMLHIHKPPTMTDHDRSSGIKPEQAPIRIFRHSNSPRSDPRL","664114 663698","TIGR ID: PG0610","hypothetical protein","Periplasm, Cytoplasm","No significant hits in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-25]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Jan 4 13:42:23 2001","Thu Jan 4 13:42:23 2001","Thu Jan 4 13:42:23 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540416","","","","","","1","","","PG0610" "PG0550","664153","665100","948","TTGAAGACAAATATCAAGATGAGAAAAACAATAATTTTCTGCTTGTTGCTCGCCCTATTTGGCTGTTCTTGGGCACAAGAAAGAGTCGATGAAAAAGTATTCTCCGCAGGAACAAGTATTTTTAGGGGCATCCTTGAAAAGGTGAAAGCACCGCTTATGTATGGAGATCGTGAGGTATGGGGTATGGCTCGTGCGAGCGAGGATTTCTTTTTTATACTTCCCGTTACGGATGACCTCACTCCCGTGCTTTTCTATAACCGTCTTACAAACGAACCCTGCTTTGTGTCAGACCAAGGAATAACTGAGTATTTCAAATTCGCTCAAGAAGGTGATTACATTGAAGTCGAAGGAAGCTCTGTATTCATGGCGAATCTTTTGTACTATCGTTTTTTCCCGACAAGAATTACCTCCTATAATGCTCCCATTGAAGGTGTTGTGAGCAAGACGGGAAATCCTGCTTTTACAATCCCGATGCTCCCGGGGGTTTCTGATTGCATAGAAATCTCAAACAACCGCAAAGTCTTTCTGACCAATCAATTAGGGGTTGTAAACATCACTGACGGGATGGAACCTCCGATTATTGCCGGAGTCTCTGCTTCCTATGGATCTTCCGTCCGGGTGTATGGTCATGTCTCACAGCGGTGGGACATCATAGGCCATTGCTATTTGGATATCTACCCAACCAATTGCTATCCGCTCAGCACGAAACCCGTTGCAGGAGACGATGAGGTTTTTGTCAAACAACAAGGCAGGCAAATAGAGATCGATAGCAACAGCCCCATAGTCCAAGTGGTCGTATACGATCTTGAGGGGAAAAGTGTTTTTCGCAAAAGAATGACCGAAAACGCTTATACCCTATCCTTTAGAGCACCCATGCTCGGCTTTATGACCATCATGATCGAAACACAAAATTCGATTATCAATAAAAAACTTAATGTTACACAGCTA","5.50","-2.79","35624","LKTNIKMRKTIIFCLLLALFGCSWAQERVDEKVFSAGTSIFRGILEKVKAPLMYGDREVWGMARASEDFFFILPVTDDLTPVLFYNRLTNEPCFVSDQGITEYFKFAQEGDYIEVEGSSVFMANLLYYRFFPTRITSYNAPIEGVVSKTGNPAFTIPMLPGVSDCIEISNNRKVFLTNQLGVVNITDGMEPPIIAGVSASYGSSVRVYGHVSQRWDIIGHCYLDIYPTNCYPLSTKPVAGDDEVFVKQQGRQIEIDSNSPIVQVVVYDLEGKSVFRKRMTENAYTLSFRAPMLGFMTIMIETQNSIINKKLNVTQL","664153 665100","TIGR ID: PG0611","possible lipoprotein","Outer membrane, Cytoplasm","This sequence corresponds to gi:34396730 in Genbank.","
noIPR
unintegrated
unintegrated
signalp\"[1-25]?signal-peptide
tmhmm\"[10-25]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Mar 3 13:26:54 2005","Thu Mar 3 13:26:54 2005","Thu Jan 4 13:44:50 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 99-281 are 26% similar to PG0552, residues 7-217 are 25% similar to PG0551, both hypothetical proteins.","Mon Apr 2 18:18:13 MDT 2001","Mon Apr 2 18:18:13 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Apr 2 18:18:13 MDT 2001","34540417","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Thu Mar 3 13:26:54 2005","","1","","","PG0611" "PG0551","665327","666013","687","ATGATGAAAAAAGCATTTGTTTTCGTACTACTGGTTTGCCTATTCTCCTCGTTCAGCAGTTCCGCCCAAACAACGACGAACAGTAGCCGGAGTTATTTTACAGGACGAATCGAGAAGGTGAGTTTGAACTTAGGGGTCCCCCCCGTAAGCACAGAGGTTTGGGGAATGACCCATGATGCGAACGGTCTCCCTTTCGAAATACCTATCTCTTTCAGTCGTTTCAACAGCCAGGGAGATATAGCTACCACTTATTACATAGCGAATAGCGAGGCAACTTTGAATGAATGGTGCGACTATGCACACCCGGGCGGCATCGTGAGGGTAGAAGGTCGTTTTTGGAAAATGACTTACAACATACCAACCTACAATGCAGTCTGCACCCGGATTACATTCGAAAATCAAGAAATAGAAGGAACGATCGTCTTGATACCCAAGCCCAAAGTCTCGCTGCCTCATGTGTCGGAATCGGTGCCTTGCATCCGAACCGAAGCCGGGAGGGAATTTATCCTTTGCGAAGAAGACGACACCTTTGTGTCTCACGATGGTAACGAAGTAACGATAGGCGGTAAACCTTTCTTGCTCAATACCAACGTAAAGATTGTGGGGGACGTATCTCAAAAGTATGCCGTGGGGGTAGGAGAAATTCGATTCCTGCAGATTTGTGCCCAAACAGTATCACAACAAAAA","5.70","-3.32","25411","MMKKAFVFVLLVCLFSSFSSSAQTTTNSSRSYFTGRIEKVSLNLGVPPVSTEVWGMTHDANGLPFEIPISFSRFNSQGDIATTYYIANSEATLNEWCDYAHPGGIVRVEGRFWKMTYNIPTYNAVCTRITFENQEIEGTIVLIPKPKVSLPHVSESVPCIRTEAGREFILCEEDDTFVSHDGNEVTIGGKPFLLNTNVKIVGDVSQKYAVGVGEIRFLQICAQTVSQQK","665327 666013","Veith et al. (2002) identified this protein by two-dimensional gel electrophoresis and peptide mass fingerprinting of outer membranes prepared from strain W50. Based on signal peptide sequence comparisons to PG0626, PG0627, PG1592, PG1840, PG0836, PG0023, PG1893, the mature N-terminus of this protein is predicted to be pyroglutamate.TIGR ID: PG0613","possible outer membrane-associated protein P23","Outer membrane, Cytoplasm, Extracellular","No significant hits in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-21]?signal-peptide
tmhmm\"[5-23]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Thu Feb 7 17:50:03 2002","Mon Feb 11 12:24:36 2002","Thu Jan 4 13:46:29 2001","Thu Jan 4 13:46:29 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 21-208 are 33% similar to PH0552, residues 2-210 are 25% similar to PG0550.","Thu Jan 4 13:46:29 2001","Thu Feb 7 17:20:29 2002","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Feb 7 17:20:29 2002","34540419","","Veith,P., Talbo,G., Slakeski,N., Dashper,S., Moore,C.,Paolini,R., Reynolds,E., Major outer membrane proteins and proteolytic processing of RgpA, and Kgp of Porphyromonas gingivalis W50, Biochem J. 2002 (in press).","","Thu Feb 7 17:20:29 2002","","1","","","PG0613" "PG0552","665988","666965","978","GTGCCCAAACAGTATCACAACAAAAATGAACACAAGATGAAACAAACAATACTTGGCATACAGCTGTCACAATGGACAAAGTGTTTTCTTTCATTCTTCCTGATTGCAGGATGTACAGGAGCATTATCGGGGCAGTCTCCATCACAATCGAGAGGATACGCGACAACCGGCATCTTAGAGCCTGTTATGCTGCCCGACACAGTCCCGGTCGATTATCACTCGGCCTGGGGGATGGTCTGTGATGCACAACTGAATGCCTTTGACAAGCCGATAGCCTTTAGAGCACCATTCAGTTATCAGGGAAAAGGTTATTATTATCCTACAGCTTATTATGGGGGGTTAAGGGAGTTCTGTCCATACGCCAAGTTGGGCGATATGCTAATTACAGAAGGTCGTTTCCATGAATTCGATGCCTACTATGAACTGATGTGCACACGCATCACTCTCCCCAATCGAACTTTCGAGGGAGTGGTTACCGAGATCCCTATGCCGCAATTTACGTATCCGGAAGTGACAGCGACTATTGTTTGCGTAAAAGACGACAGCGGCTTCGAGATCGCAATCAAAGATGACGAAGGCAACTTTATCAGTAGTGAAAACGGAGAAGTAATGATAGCCGGAAACTCCTATCCCCTCCAAACGCGCGTCAGGGTAGAGGGAGACATTGTGCAGGATTATCAGCTGAAGTATCCCATTATCTTCTATAGCACGGTTGCCAAATCATGCCATACGACAGATAGCCAAACAGTTGTACCTTCGTCGAACGATATAAACGTCTACATCCAAGGAACGACCATCGGCATCAAGGCAGAAAAACTGATCAAATCGGTCTATATTTATGATATGGCAGGACGGATGCTTTTTGCCACGAGTCAGACACAGGGCAGAGAATTTTGTATCGACTTAAAGACGAAAGGCCATATTCTCGTCACTGTTTTGTTTGCTGATAATACACAGACATCTAAGAACATCATCCTG","6.00","-3.93","36543","VPKQYHNKNEHKMKQTILGIQLSQWTKCFLSFFLIAGCTGALSGQSPSQSRGYATTGILEPVMLPDTVPVDYHSAWGMVCDAQLNAFDKPIAFRAPFSYQGKGYYYPTAYYGGLREFCPYAKLGDMLITEGRFHEFDAYYELMCTRITLPNRTFEGVVTEIPMPQFTYPEVTATIVCVKDDSGFEIAIKDDEGNFISSENGEVMIAGNSYPLQTRVRVEGDIVQDYQLKYPIIFYSTVAKSCHTTDSQTVVPSSNDINVYIQGTTIGIKAEKLIKSVYIYDMAGRMLFATSQTQGREFCIDLKTKGHILVTVLFADNTQTSKNIIL","665988 666965","TIGR ID: PG0614","hypothetical protein","Cytoplasm, Extracellular","No significant hits in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-40]?signal-peptide
tmhmm\"[21-41]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Jan 4 13:47:54 2001","Thu Jan 4 13:47:54 2001","Thu Jan 4 13:47:54 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 43-226 are 33% similar to PG0551, residues 113-294 are 26% similar to PG0550.","Thu Jan 4 13:47:54 2001","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540420","","","","","","1","","","PG0614" "PG0553","667174","668970","1797","ATGCAGGACATCAGGAACATTGCCATCATTGCCCACGTAGACCACGGTAAAACCACGCTCGTGGACAAGATGCTCTTAGCCGGCAAGCTTTTCAGGGATGACAAGGCTGCCGAAGTGGATACTTTCCTCGATAGCAACGACTTGGAACGCGAACGCGGTATCACCATTCTTTCCAAAAACGTCAGTATTCGCTATAAGGGTTGTAAAATCAATATCATCGATACCCCGGGACACGCCGACTTCGGCGGTGAAGTGGAGCGCGTGCTCAATATGGCCGATGGATGCCTCCTGCTGGTGGATGCCTTCGAGGGGCCGATGCCGCAGACTCGGTTTGTGCTGCAAAAAGCCATCGAGATGGGACTCAAACCCATCGTCGTCATCAACAAAGTAGACAAACTCAACTGCCGTCCGAGCGAAGTGCAGGATATGGTGTTCGACCTCATGTACAGCCTCGATGCTTCGGAGGATCAGCTCGATTTCCCCACCATATACGGCTCGGCCAAGCAGGGTTGGATGAGTACCGACTACAAACATCCCACACAGGACATTGCTCCGCTACTCGATGCCATCATCCGACACATCCCCGCTCCCGAACAGCCGGAGGGTGCCACGCAGATGCTCATTACATCGCTTGACTATACTTCCTATGTGGGGCGTATTGCCGTCGGGCGAGTACATCGCGGCACACTCCGCGAAGGGCAGGATATTATGCTCTGCAAGCGTGATGGTACGATGCAGAAGCAGCGAATCAAGGAGCTGAATACCTTCGAAGGCTTGGGACGAGCCAAAGCCGACCATGTGGATGCAGGAGATATATGCGCTATCATCGGTTTGGAAAGTTTCGAAATCGGAGAGACCATTGCCGATGCCAATGCTCCCGAAGCTCTTCAGGCTATTGCGATCGATGAGCCGACGATGAGTATGCTCTTTACCATCAACAACTCGCCGTTCTACGGCAAGGAGGGTAAGTATGTCACCAGCCGGCATATTCACGACCGTCTGATGCGAGAACTGGACAAGAATCTGGCTCTTCGTGTGGAGACCACCGATAACGCCGACAGCTGGCTCGTATTCGGGCGTGGCGTACTGCATCTTTCCGTTCTTATCGAGACCATGCGCCGCGAGGGGTACGAACTTCAAGTGGGGCAGCCCCAAGTGATCATCAAAGAGATAGACGGCGAGCGGTGCGAACCGATAGAGCTTCTTTCGATCAATCTGCCGGAAGAGTCCTCCAGTCGTATCATAGACATAGTGACCCGTCGCAAGGGAGAGATGGTGATGATGGAAAACAAGAACGACCGGGTGTTTATGGAGTTCCATATCCCTTCACGAGGGATCATCGGACTCAACAATGCCGTACTGACAGCATCGGCAGGAGAGGCCGTAATCGCGCACCGCTTCTTGGAATTCCAACCGTGGAAAGGGGAGATAGAGCGGCGCAGCAACGGGTCGATCATTGCGCTCGAAAGCGGAACGGCCTATGCCTATGCCCTGAATAATCTCCAAAGCCGTGGACGCTTCTTCATCTCTCCGCAGGAGGAGGTCTATGCCGGTCAGGTCGTAGGCGAGCACACGAAGGAGGGCGATCTCTGCGTCAACGTCTGCAAGAGCAAAAAGCTTACCAATATGCGTGCTTCCGGTAGCGATGATAAGGTGTCACTGGCTCCACCGGTGGTATTCAGCCTCGAAGATGCTTTGGAGTATATCAAGTATGACGAGTATGTGGAGGTGACGCCGAAAAGCATGCGCATGCGTAAAATTATCCTCGACGAGACAGAACGTAAACGACAAGGACGA","5.30","-15.17","67188","MQDIRNIAIIAHVDHGKTTLVDKMLLAGKLFRDDKAAEVDTFLDSNDLERERGITILSKNVSIRYKGCKINIIDTPGHADFGGEVERVLNMADGCLLLVDAFEGPMPQTRFVLQKAIEMGLKPIVVINKVDKLNCRPSEVQDMVFDLMYSLDASEDQLDFPTIYGSAKQGWMSTDYKHPTQDIAPLLDAIIRHIPAPEQPEGATQMLITSLDYTSYVGRIAVGRVHRGTLREGQDIMLCKRDGTMQKQRIKELNTFEGLGRAKADHVDAGDICAIIGLESFEIGETIADANAPEALQAIAIDEPTMSMLFTINNSPFYGKEGKYVTSRHIHDRLMRELDKNLALRVETTDNADSWLVFGRGVLHLSVLIETMRREGYELQVGQPQVIIKEIDGERCEPIELLSINLPEESSSRIIDIVTRRKGEMVMMENKNDRVFMEFHIPSRGIIGLNNAVLTASAGEAVIAHRFLEFQPWKGEIERRSNGSIIALESGTAYAYALNNLQSRGRFFISPQEEVYAGQVVGEHTKEGDLCVNVCKSKKLTNMRASGSDDKVSLAPPVVFSLEDALEYIKYDEYVEVTPKSMRMRKIILDETERKRQGR","667057 668970","TIGR ID: PG0615","GTP-binding elongation factor family protein","Cytoplasm","Numerous significant hits in gapped BLAST to GTP-binding elongation factor family protein; e.g. residues 3-595 are 55% similar to gb|AAF10766.1|AE001968_5 GTP-binding elongation factor family protein TypA/BipA of Deinococcus radiodurans, residues 4-587 are 51% similar to dbj|BAA16764.1 elongation factor EF-G of Synechocystis sp., residues 3-595 are 49% similar to emb|CAB13350.1 similar to GTP-binding elongation factor of Bacillus subtilis.This sequence is similar to BT2787.","
InterPro
IPR000640
Domain
Translation elongation factor EFG/EF2, C-terminal
G3DSA:3.30.70.240\"[397-485]TTransl_elong_EFG/EF2_C
PF00679\"[394-481]TEFG_C
InterPro
IPR000795
Domain
Protein synthesis factor, GTP-binding
PR00315\"[6-19]T\"[51-59]T\"[71-81]T\"[87-98]T\"[123-132]TELONGATNFCT
PF00009\"[2-198]TGTP_EFTU
PS00301\"[44-59]TEFACTOR_GTP
InterPro
IPR004161
Domain
Translation elongation factor EFTu/EF1A, domain 2
PF03144\"[218-288]TGTP_EFTU_D2
InterPro
IPR005225
Domain
Small GTP-binding protein domain
TIGR00231\"[2-180]Tsmall_GTP
InterPro
IPR006298
Family
GTP-binding protein TypA
TIGR01394\"[4-596]TTypA_BipA
InterPro
IPR009000
Domain
Translation elongation and initiation factors/Ribosomal, beta-barrel
SSF50447\"[180-298]TTranslat_factor
InterPro
IPR009022
Domain
Elongation factor G, III and V
SSF54980\"[330-385]T\"[397-520]TEFG_III_V
noIPR
unintegrated
unintegrated
G3DSA:2.40.30.10\"[198-298]TG3DSA:2.40.30.10
G3DSA:3.40.50.300\"[1-197]TG3DSA:3.40.50.300
PTHR23115\"[1-320]TPTHR23115
PTHR23115:SF14\"[1-320]TPTHR23115:SF14
SSF52540\"[1-219]TSSF52540


","BeTs to 6 clades of COG1217COG name: Membrane GTPaseFunctional Class: NThe phylogenetic pattern of COG1217 is -------cebrhuj------xNumber of proteins in this genome belonging to this COG is 1","***** IPB000795 (GTP-binding elongation factor) with a combined E-value of 1.2e-29. IPB000795A 6-21 IPB000795B 73-104 IPB000795C 108-132***** IPB000178 (Initiation factor 2) with a combined E-value of 2e-09. IPB000178C 70-116 IPB000178B 3-44","Residues 303-395 are 64% similar to a (PROTEIN GTP-BINDING TYPA/BIPA HOMOLOG) protein domain (PD011418) which is seen in TYPA_BACSU.Residues 191-302 are 39% similar to a (FACTOR PROTEIN ELONGATION GTP-BINDING BIOSYNTHESIS TU) protein domain (PD000168) which is seen in TYPA_BACSU.Residues 471-589 are 54% similar to a (PROTEIN GTP-BINDING TYPA/BIPA HOMOLOG) protein domain (PD011419) which is seen in TYPA_HELPY.Residues 380-470 are 40% similar to a (PROTEIN GTP-BINDING BIOSYNTHESIS ELONGATION FACTOR EF-2) protein domain (PD000296) which is seen in TYPA_SYNY3.Residues 1-54 are 61% similar to a (PROTEIN GTP-BINDING FACTOR ELONGATION BIOSYNTHESIS TU) protein domain (PD000122) which is seen in TYPA_ECOLI.Residues 16-144 are 41% similar to a (PROTEIN GTP-BINDING LIPOPROTEIN PRENYLATION RAS-RELATED) protein domain (PD000015) which is seen in LEPA_BORBU.Residues 153-302 are 39% similar to a (PROTEIN GTP-BINDING PUTATIVE TYPA/BIPA HOMOLOG 5') protein domain (PD103945) which is seen in TYPA_SYNY3.Residues 55-151 are 65% similar to a (PROTEIN GTP-BINDING FACTOR BIOSYNTHESIS ELONGATION TU) protein domain (PD000134) which is seen in TYPA_SYNY3.","","Thu Jun 14 12:53:50 MDT 2001","","Thu Jun 14 12:53:50 MDT 2001","Thu Jun 14 12:53:50 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:53:50 MDT 2001","Thu Jun 14 12:53:50 MDT 2001","","","Thu Jan 4 13:58:38 2001","Fri Dec 19 10:05:38 2003","Thu Jan 4 13:58:38 2001","Wed Jun 20 08:44:22 MDT 2001","Fri Dec 19 10:05:38 2003","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1-375 are 32% similar to PG1097, residues 5-144 are 36% similar to PG0188, residues 6-271 are 28% similar to PG0353, residue 1-140 are 36% similar to PG1692.","Wed Jun 20 08:48:22 MDT 2001","Mon Apr 30 16:16:44 MDT 2001","-58% similar to PDB:1N0U Crystal structure of yeast elongation factor 2 in complex with sordarin (E_value = 2.7E_23);-58% similar to PDB:1N0V Crystal structure of elongation factor 2 (E_value = 2.7E_23);-58% similar to PDB:1S1H Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1H, Contains 40S subunit. The 60S Ribosomal Subunit Is In File 1S1I. (E_value = 2.7E_23);-58% similar to PDB:1U2R Crystal Structure of ADP-ribosylated Ribosomal Translocase from Saccharomyces cerevisiae (E_value = 2.7E_23);-58% similar to PDB:1ZM2 Structure of ADP-ribosylated eEF2 in complex with catalytic fragment of ETA (E_value = 2.7E_23);","","","Residues 2 to 198 (E-value = 1.3e-66) place PG0553 in the GTP_EFTU family which is described as Elongation factor Tu GTP binding domain (PF00009)Residues 218 to 288 (E-value = 1.5e-14) place PG0553 in the GTP_EFTU_D2 family which is described as Elongation factor Tu domain 2 (PF03144)Residues 394 to 481 (E-value = 1.2e-17) place PG0553 in the EFG_C family which is described as Elongation factor G C-terminus (PF00679)","Fri Dec 19 10:05:38 2003","34540421","","","","","","1","","","PG0615" "PG0554","669076","670107","1032","ATGAAAAGATTATTACTCTCTGCTGCTATCCTAAGTAGTATGGCTTTGTTTAATGTCAATGCACAAGAGTTGAAAACCTCTGCTGACATGAAAGGTTCTTTTAAGAAGAATGTGGTATTGGAGGTATTTACTGCCGAATGGTGCGGTTACTGTCCAGGTGGAAAAGAGCGCATTGCAAAAGCAATTGAAATGTTGGATGATGAATATAAGGAGCGTGTTTTTCAGACATTTGTTCATTATAATGATGGGATCTCAAAAAAATGGCCTCGTGTTGGCCAACTTTTCATTGCATTGGATCAAACATTGGGCATTCCGGGTTTTCCGACTTTTTCAGTTTGCCGTATGGAGAAAAAAGGTGAAAATCTTTCAATAGGTGCTCCAATAGCAATTAAAAATAAGATTATGAAAGGTTTTGGTGATGGTACAGCCCCTGCAGAGGTAAACCTTAAATTGACCAAAGGTGCAACACCGGAAGATGTATGTACAGCTACATTTACTGGTAAAGTCGATGCTGACCTCATAGGGAAACCTCTTATGTTGACTGCATATGTATTGAAAAACAATATGAAGCCTATTAATCCGCAAAATGGAGCTGGGGATGGATATCTCCACCAACATACTGTGTTAATGATTCTCTCCACAGATGTAAAAGGAGACGCTTTAAATATTGCAGCCGATGGAAGTTTTACCATCAAGAAAGAATTTAAGTTGGATGGCTTTGAAATTAAAGATACAGATGTTCTTGCTTTCGTACACCATCCAATGTCCAATGCGGAAAACCATTCTATTATCAATGCCGGGCAAGAAAGCCTTGATAAAGCAGAGCCTACAGCTACAGAACAAATTGTTGCTACCCCCTCTGTCAAAGCATATGTTCAGAATGGCAAAATTGTTGTAGAGGAAGAGTATTCCAAGATGGAAGTATTCAATGCAACTGGTCAACTTGTCAAAAATGAATCCCTTGTCCCCGGTGTCTATGTTGTCCGTATAACGGCAAACGGTGTAATGTATTTCCTTAAAGTCTTGGTTCCT","7.10","0.27","37574","MKRLLLSAAILSSMALFNVNAQELKTSADMKGSFKKNVVLEVFTAEWCGYCPGGKERIAKAIEMLDDEYKERVFQTFVHYNDGISKKWPRVGQLFIALDQTLGIPGFPTFSVCRMEKKGENLSIGAPIAIKNKIMKGFGDGTAPAEVNLKLTKGATPEDVCTATFTGKVDADLIGKPLMLTAYVLKNNMKPINPQNGAGDGYLHQHTVLMILSTDVKGDALNIAADGSFTIKKEFKLDGFEIKDTDVLAFVHHPMSNAENHSIINAGQESLDKAEPTATEQIVATPSVKAYVQNGKIVVEEEYSKMEVFNATGQLVKNESLVPGVYVVRITANGVMYFLKVLVP","669076 670107","TIGR ID: PG0616","hypothetical protein","Periplasm, Cytoplasm","No significant hits in gapped BLAST.","
InterPro
IPR006662
Domain
Thioredoxin-related
PR00421\"[39-47]T\"[47-56]T\"[103-114]TTHIOREDOXIN
InterPro
IPR012336
Domain
Thioredoxin-like fold
SSF52833\"[1-114]TIPR012336


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Jan 4 14:00:10 2001","Thu Jan 4 14:00:10 2001","Thu Jan 4 14:00:10 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540422","","","","","","1","","","PG0616" "PG0555","670200","670496","297","GTGGTCGTCGAAGGGGACTGCCTGTCATCTTTCAAACGAGGAATATCAGCTCCCCTCACACAACACGATGTCCACAAATCCATGTTCATAGCCTATTTGAGACCTTTGAAAAAAGAGAAGGTTTCTTATATCTATAAAGGCACTAAAAATCAGTCGATTGACAATGAAATCTCCAAGAAAATACCGTGCGACAGTCTCACTTATATAGATGCGGTCAATGGTCTGATATATCGAGGCTGTTGTGGATGGAGGATAGTACACATAGTTTTGCACCTGAAACAAACGTTCATACTAAAC","9.80","6.75","11251","VVVEGDCLSSFKRGISAPLTQHDVHKSMFIAYLRPLKKEKVSYIYKGTKNQSIDNEISKKIPCDSLTYIDAVNGLIYRGCCGWRIVHIVLHLKQTFILN","670200 670496","TIGR ID: PG0617","hypothetical protein","Cytoplasm","No significant hits in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Jan 4 14:01:04 2001","Thu Jan 4 14:01:04 2001","Thu Jan 4 14:01:04 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540423","","","","","","1","","","PG0617" "PG0556","670513","671076","564","ATGACTCCTATCCTGAACACCGTTTTCCCCGAGTTCAAACTCAATGCCTATCACAATGGCGAATTCAAAGTAATCACCAACGAAGACTTGAAAGGCAAGTGGTCTTTGGTCGTTTTCTATCCCGGTGACTTTACCTTTGTATGCCCGACGGAATTGGAAGACCTGGCCAATAAATATGAAGAATTCAAGCAACTTGGAGTAGAGGTTTACTCTTGCAGTTGCGATACCCACTTCGTACACAAGGCTTGGGCCGACGCTTCTCCTGCTATCAAGAAGGTACAGTATCCCATGTTGGCCGATCCCTCCGGTGCACTCACTCGCGATCTGGGTATCCTGATCGATGATGTTCATATGGCTTACCGTGGCTCTTTCGTGATTAACCCCGAAGGCATTATCAAAATCGTAGAGCTGAACGACAACAGCGTAGGCCGTGATGCAGAAGAGATCCTCCGTAAGATCAAGGCTGCACAATACGTAGCTGCTCACGATGGTCAGGTATGTCCGGCCAAGTGGCGTGAAGGTCAGCAGACACTGAAACCGAGCATTGATCTCGTTGGTAAGATC","5.40","-4.99","21062","MTPILNTVFPEFKLNAYHNGEFKVITNEDLKGKWSLVVFYPGDFTFVCPTELEDLANKYEEFKQLGVEVYSCSCDTHFVHKAWADASPAIKKVQYPMLADPSGALTRDLGILIDDVHMAYRGSFVINPEGIIKIVELNDNSVGRDAEEILRKIKAAQYVAAHDGQVCPAKWREGQQTLKPSIDLVGKI","thiol specific antioxidant (thioredoxinperoxidase)","Another alkyl hydroperoxide reductase subunit is immediately downstream, PG0557.TIGR ID: PG0618","alkyl hydroperoxide reductase subunit C (alkyl hydroperoxide reductase subunit F)","Cytoplasm","Numerous significant hits in gapped BLAST to alkyl hydroperoxide reductase protein; e.g. residues 1-188 are 63% similar to gbAAD52147.1AF129406_1alkyl hydroperoxide reductase subunit C of Bacteroides fragilis, residues 3-188 are 62% similar to dbjBAA31468.1 AhpC of Pseudomonas putida, residues 12-188 are 59% similar to gbAAF82118.1AF276071_2 peroxiredoxin of Thermus aquaticus.This sequence is similar to CT603 of Chlamydia trachomatis.","
InterPro
IPR000866
Domain
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
PF00578\"[5-135]TAhpC-TSA
InterPro
IPR012335
Domain
Thioredoxin fold
G3DSA:3.40.30.10\"[3-188]TThioredoxin_fold
InterPro
IPR012336
Domain
Thioredoxin-like fold
SSF52833\"[3-188]TIPR012336
noIPR
unintegrated
unintegrated
PTHR10681\"[3-181]TPTHR10681
PTHR10681:SF7\"[3-181]TPTHR10681:SF7


","BeTs to 15 clades of COG0450COG name: Thiol - alkyl hydroperoxide reductasesFunctional Class: OThe phylogenetic pattern of COG0450 is amtkYQvCeBR-uj---linxNumber of proteins in this genome belonging to this COG is 1","***** PF00578 (AhpC/TSA family) with a combined E-value of 5.4e-25. PF00578A 32-51 PF00578B 73-83 PF00578C 142-153","Residues 3-81 are 62% similar to a (PROTEIN PEROXIDASE ANTIOXIDANT REDUCTASE THIOREDOXIN) protein domain (PD000498) which is seen in O82863_PSEPU.Residues 93-157 are 58% similar to a (ANTIOXIDANT PROTEIN PEROXIDASE REDUCTASE THIOREDOXIN) protein domain (PD000721) which is seen in O82863_PSEPU.Residues 158-188 are 77% similar to a (ALKYL REDUCTASE HYDROPEROXIDE) protein domain (PD008012) which is seen in AHPC_SALTY.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","Wed Mar 22 16:31:07 MST 2000","Tue Mar 26 17:21:18 2002","Tue Mar 13 17:04:24 MST 2001","Thu Jul 10 17:10:18 2008","Tue Mar 26 17:21:18 2002","Tue Mar 13 17:04:24 MST 2001","Tue Mar 13 17:04:24 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Jul 10 17:10:18 2008","-77% similar to PDB:1YF1 Structural and biochemical analysis of the link between enzymatic activity and oligomerization in AhpC, a bacterial peroxiredoxin. (E_value = 3.1E_62);-77% similar to PDB:1YF0 Structural and biochemical analysis of the link between enzymatic activity and oligomerization in AhpC, a bacterial peroxiredoxin. (E_value = 4.1E_62);-76% similar to PDB:1YEP Structural and biochemical analysis of the link between enzymatic activity and olgomerization in AhpC, a bacterial peroxiredoxin. (E_value = 9.1E_62);-76% similar to PDB:1YEX Structural and biochemical analysis of the link between enzymatic activity and oligomerization in AhpC, a bacterial peroxiredoxin. (E_value = 2.0E_61);-76% similar to PDB:1N8J Crystal Structure of AhpC with Active Site Cysteine mutated to Serine (C46S) (E_value = 1.3E_60);","","","Residues 5 to 151 (E-value = 3.8e-67) place PG0556 in the AhpC-TSA family which is described as AhpC/TSA family (PF00578)","Tue Mar 13 17:04:24 MST 2001","34540424","","Johnson NA, Liu Y, Fletcher HM., Alkyl hydroperoxide peroxidase subunit C (ahpC) protects against organic peroxides but does not affect the virulence of Porphyromonas gingivalis W83.Oral Microbiol Immunol. 2004 Aug;19(4):233-9.PMID: 15209993 Diaz PI, Zilm PS, Wasinger V, Corthals GL, Rogers AH., Studies on NADH oxidase and alkyl hydroperoxide reductase produced by Porphyromonas gingivalis., Oral Microbiol Immunol. 2004 Jun;19(3):137-43.PMID: 15107063","Rocha,E.R. and Smith,C.J. 1999. Role of the alkyl hydroperoxide reductase (ahpCF) gene in oxidative stress defense of the obligate anaerobe Bacteroides fragilis. J. Bacteriol. 181 (18): 5701-5710. PubMed: 10482511.Meuric V, Gracieux P, Tamanai-Shacoori Z, Perez-Chaparro J, Bonnaure-Mallet M., Expression patterns of genes induced by oxidative stress in Porphyromonas gingivalis., Oral Microbiol Immunol. 2008 Aug;23(4):308-14.PMID: 18582330","Thu Jul 10 19:33:18 2008","Thu Jul 10 17:10:18 2008","1","","","PG0618" "PG0557","671245","672789","1545","ATGCTTGATAAAGATACTCTTGCCCAAGTGGGTTCTTACTTTGCCCAACTGAAAAAGTCCTATACATTACGACTCAATGCTCATACGTCTCATCCTTCCTACAACGAGGCGAAGGAAATGCTCGATGGGCTTGCATCCGTTTCGGATCATGTTCGTGCGGAATACAATGCGGCAGATGATTTTCGTATCGATCTGCTCGTAGACGGAGCGGATAGCGGGATCGGCTTCCGTGGTATCCCGGGTGGCCATGAATTTAGCTCACTGCTTCTTGCTATTCTCAACAATGACGGTATCGGAAGGAATATCCCCGATGAAGGAGTACAGGATAGAATCCGCCGTATCAATGGGCCGATAGAGCTGAAAACCTATGTATCCCTCTCTTGTACGAATTGTCCCGATGTGGTGCAGACCCTCAATATGATTGCCATTCTCAATCCGACTATCAATCACACCATGGTCGATGGTTCTTTCTTCCCGGACGAAGTGGAGTCGTTGGGCATCGCTTCCGTTCCGACGGTTATGGCCGGAGATGAAGTGATCCATGTGGGGCGTGGCGATATGGCTGCCTTGCTGAACAAGATAGAAGCCAAATATGGCTCTGTCCCTGCCGAGTCGGCAGATAAGACGCTGCGGCCTTTCGACCTCCTTGTCGTGGGCGGTGGCCCGGCCGGATCGGCTGCAGCCATCTATTCTGCTCGTAAGGGGCTGAAGGTAGCCATCGTAGCCGAACGGGTAGGCGGCCAAGTAAACGAAACGGTCGGGATCGAGAACCTGATTTCCGTGCCTTACACCACAGGATCGGAACTTGCATCCAACCTCAATTCTCACATCAAGGCCAATACGATCTCCCTCTTCGAGGCCCGAACCGTGTCGTCCATCACACAACAAGAAGGTATATCCCGTGTGGAAGTGACTTCCGGAGAAGTCTTCACGGCTCCGGCTCTTATCATGGCTACGGGTGCTTCATGGCGCAAGCTCGGTGTACCCGGCGAGAAAGAATATACGGGTAATGGTGTAGCCTACTGCGCTCACTGCGATGGGCCTTTCTTCAAAGGCAAGCGTGTGGCCGTGGTCGGTGGAGGCAACTCCGGTCTGGAAGCTGCCATCGATTTGGCCGGTATATGCGAGCATGTCACTGTAGTAGAGTTTCTGGATGTGCTCAGGGCTGATGAGGTGCTTCAAAAGAAAGCACGTGAAACGGCCAATATCGACATCCTCCTCAGTACTGCTACCAAAGAAATCATGGGCAACGGACAGAAAGTGGAGGGAATACTGCTTACCGATCGCAACACGGGAGAGGAAAAGCAAATCGCACTCAGTGGCGTATTCGTACAGATCGGTCTTGCCGCCAATACATCCCTTGTGAAAGATTTGGTGGAAACAAACAGCCGAGGCGAAGTACTCATCGATACTTCATGCCGTACCAATACGCCCGGCATATATGCTGCAGGTGACTGTACCACTGTGCCCTACAAACAGATAGTCATTGCCATGGGCGAAGGAGCCAAAGCTGCTCTTTCTGCTTTCGAGGATCGCATCCGTGGC","4.90","-15.12","54502","MLDKDTLAQVGSYFAQLKKSYTLRLNAHTSHPSYNEAKEMLDGLASVSDHVRAEYNAADDFRIDLLVDGADSGIGFRGIPGGHEFSSLLLAILNNDGIGRNIPDEGVQDRIRRINGPIELKTYVSLSCTNCPDVVQTLNMIAILNPTINHTMVDGSFFPDEVESLGIASVPTVMAGDEVIHVGRGDMAALLNKIEAKYGSVPAESADKTLRPFDLLVVGGGPAGSAAAIYSARKGLKVAIVAERVGGQVNETVGIENLISVPYTTGSELASNLNSHIKANTISLFEARTVSSITQQEGISRVEVTSGEVFTAPALIMATGASWRKLGVPGEKEYTGNGVAYCAHCDGPFFKGKRVAVVGGGNSGLEAAIDLAGICEHVTVVEFLDVLRADEVLQKKARETANIDILLSTATKEIMGNGQKVEGILLTDRNTGEEKQIALSGVFVQIGLAANTSLVKDLVETNSRGEVLIDTSCRTNTPGIYAAGDCTTVPYKQIVIAMGEGAKAALSAFEDRIRG","671245 672789","Another alkyl hydroperoxide reductase subunit is immediately upstream, PG0556.TIGR ID: PG0619","alkyl hydroperoxide reductase subunit F","Cytoplasm","Numerous significant hits in gapped BLAST to alkyl hydroperoxide reductase subunit F protein; e.g. residues 1-515 are 54% similar to gb|AAD52148.1|AF129406_2 alkyl hydroperoxide reductase subunit F of Bacteroides fragilis, residues 1-514 are 44% similar to sp|O82864|AHPF_PSEPU alkyl hydroperoxide reductase subunit F of Pseudomonas putida, residues 1-514 are 45% similar to gb|AAG03530.1|AE004452_2 alkyl hydroperoxide reductase subunit F of Pseudomonas aeruginosa.This sequence is similar to BT2811.","
InterPro
IPR000103
Domain
Pyridine nucleotide-disulphide oxidoreductase, class-II
PR00469\"[214-236]T\"[246-261]T\"[266-276]T\"[313-321]T\"[335-347]T\"[350-374]T\"[402-418]T\"[441-462]T\"[475-493]TPNDRDTASEII
InterPro
IPR000759
Family
Adrenodoxin reductase
PR00419\"[214-236]T\"[355-369]TADXRDTASE
InterPro
IPR001327
Domain
Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region
PD000139\"[319-391]TFAD_pyr_redox
PF00070\"[354-447]TPyr_redox
InterPro
IPR003042
Family
Aromatic-ring hydroxylase
PR00420\"[214-236]T\"[491-509]TRNGMNOXGNASE
InterPro
IPR008255
Active_site
Pyridine nucleotide-disulphide oxidoreductase, class-II, active site
PS00573\"[342-362]TPYRIDINE_REDOX_2
InterPro
IPR012081
Family
Alkyl hydroperoxide reductase, subunit F
PIRSF000238\"[1-514]TAhpF
InterPro
IPR012335
Domain
Thioredoxin fold
G3DSA:3.40.30.10\"[1-92]T\"[102-196]TThioredoxin_fold
InterPro
IPR012336
Domain
Thioredoxin-like fold
SSF52833\"[1-100]T\"[102-196]TIPR012336
InterPro
IPR013027
Domain
FAD-dependent pyridine nucleotide-disulphide oxidoreductase
PR00368\"[214-236]T\"[315-324]T\"[354-379]T\"[440-454]T\"[480-487]TFADPNR
PF07992\"[214-491]TPyr_redox_2
noIPR
unintegrated
unintegrated
G3DSA:3.50.50.60\"[213-323]T\"[324-447]TG3DSA:3.50.50.60
PTHR22912\"[216-490]TPTHR22912
SSF51905\"[187-511]TSSF51905


","BeTs to 17 clades of COG0492COG name: Thioredoxin reductase/alkyl hydroperoxide reductaseFunctional Class: OThe phylogenetic pattern of COG0492 is amtkYQVcEBrhUJgpolinXNumber of proteins in this genome belonging to this COG is 2","***** IPB000103 (Pyridine nucleotide-disulphide oxidoreductase class-II) with a combined E-value of 1.1e-70. IPB000103A 214-238 IPB000103B 246-260 IPB000103C 326-368 IPB000103D 441-452 IPB000103E 475-511***** IPB000171 (Bacterial-type phytoene dehydrogenase) with a combined E-value of 8.2e-06. IPB000171A 356-386 IPB000171A 216-246","Residues 298-510 are 57% similar to a (OXIDOREDUCTASE FLAVOPROTEIN FAD REDUCTASE REDOX-ACTIVE) protein domain (PD000139) which is seen in AHPF_PSEPU.Residues 1-200 are 39% similar to a (REDUCTASE FLAVOPROTEIN ALKYL HYDROPEROXIDE REDOX-ACTIVE) protein domain (PD007583) which is seen in DHNA_BACSU.Residues 212-277 are 56% similar to a (REDUCTASE FLAVOPROTEIN REDOX-ACTIVE) protein domain (PD001422) which is seen in AHPF_STAAU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Tue Mar 26 17:22:07 2002","Thu Jan 4 14:17:26 2001","Fri Dec 19 10:12:37 2003","Tue Mar 26 17:22:07 2002","Mon Apr 2 18:21:48 MDT 2001","Mon Apr 2 18:21:48 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 216-508 are 37% simlar to PG1016, NADPH thioredoxin reductase.Residues 217-510 are 24% similar to PG1776, glutamate synthase.Residues 213-487 are 22% similar to PG0721, a pyruvate dehydrogenase component.","Mon Apr 2 18:21:48 MDT 2001","Mon Apr 2 18:21:48 MDT 2001","-62% similar to PDB:1HYU CRYSTAL STRUCTURE OF INTACT AHPF (E_value = 2.2E_119);-69% similar to PDB:1FL2 CATALYTIC CORE COMPONENT OF THE ALKYLHYDROPEROXIDE REDUCTASE AHPF FROM E.COLI (E_value = 7.8E_88);-54% similar to PDB:1CL0 CRYSTAL STRUCTURE OF REDUCED THIOREDOXIN REDUCTASE FROM ESCHERICHIA COLI. (E_value = 1.2E_35);-54% similar to PDB:1TDE CRYSTAL STRUCTURE OF ESCHERICHIA COLI THIOREDOXIN REDUCTASE REFINED AT 2 ANGSTROM RESOLUTION: IMPLICATIONS FOR A LARGE CONFORMATIONAL CHANGE DURING CATALYSIS (E_value = 1.2E_35);-49% similar to PDB:2A87 Crystal Structure of M. tuberculosis Thioredoxin reductase (E_value = 2.0E_35);","","","Residues 214 to 496 (E-value = 2.4e-66) place PG0557 in the Pyr_redox family which is described as Pyridine nucleotide-disulphide oxidoreductase (PF00070)","Mon Apr 2 18:21:48 MDT 2001","34540425","","","","","","1","","","PG0619" "PG0558","673104","675533","2430","GTGAAAGAAGATCATATGCAGGAGGAGATGCCGATTTTGGCTCTCCGCAATATGATTCTCTTCCCCGGTGTGGCCATGCCTATCATGGTCGGACGAGAAAAATCACTCAAGCTGATCCGCTACGTGGAGAAGAAGGGTGTCTATTTCGGTGCCGTTTCACAGCGCGATATGGATGTGGAGGAACCGGATCGTGCCGATTTGTATGATGTCGGGGTCGTGGCTGAAATCATCAGGGTGCTGGAGATGCCCGATGGTACTACCACGGCTATCGTACAAGGCCGCCAGCGATTTGCACTGCAGGAGATAACGGCTACGGAACCTTTTATGAAGGGTCGCGTGAAGCTGCTCCCAGACATTCTCCCCGGGAAGAACAAAGATCACGAGTTCGAAGCACTCGTCTCCACCATACAGGATATGAGTCTGAAGATGATGGAGCTGATGGTCGAGAGACCCCCTCGGGAGCTTATCCTCTCGATGAGACGGAACAAGAATCCGATGTATCAGATCAACTTTGCATCGGCCAATATATCCACGAGCATAGCCGTCAAGCAAGAATTGCTGGAAATCAGCAAGATGAAGGATCGTGGCTATCGTCTTCTCTACCTGTTGCACAAGGAGCTTCAGGTAATGGAACTGAAAGCTTCTATTCAGATGAAGACGCGCGAGGAGATGGACAAGCAGCAGAAAGAGTACTTCCTGCAGCAGCAAATCAAGACGATTCAGGAGGAACTGGGTGGCAATATAAACGACATCGAGGTGCAGGAGCTGCGTACCAAAGCTGCTACGATGAAGTGGAGCAGCGAGGTAGCAGAAACTTTCGAAAAAGAACTCCGCAAGCTGGAACGGCTACATCCTCAATCGCCCGACTACTCCGTACAGATGCAGTATGTACAGACCATCATCAGTCTGCCGTGGGGCGTATTCAGTAAAGATAATTTCAACCTGAAGCGTGCCCAATCCGTTTTGGATAGAGATCATTTCGGTCTTGAGAAAGTAAAAGAGAGAATCATAGAGCATCTGGCTGTCCTCAAGATGAAAGGCGATATGAAGTCGCCCATCATCTGTCTGTACGGCCCTCCGGGAGTGGGTAAGACCTCTCTTGGCAAGAGCATTGCCGAGAGCTTGGGTCGTAAATACGTACGCATTTCTTTAGGGGGCTTGCATGACGAAGCTGAGATTCGTGGACACCGACGTACCTACATCGGTGCTATGTGCGGACGGATCATTCAGAGTTTGCAGCGAGCAGGTACATCTAATCCCGTCTTTGTCCTCGACGAAATAGACAAGATCGACAGCGACTACAAGGGCGATCCTTCTTCTGCTTTGCTCGAAGTCCTTGATCCGGAGCAGAACAATGCTTTTCATGACAATTATCTGGATATAGACTTCGACCTCAGTCATGTTCTTTTTATCGCTACGGCCAACAGTTTGAGCAGTATCTCTCGTCCTCTTTTGGACAGAATGGAGCTGATCGATGTGAGCGGTTATATCATAGAAGAAAAAGTGGAGATCGCTGCCCGCCATCTGATTCCAAAGCAACTTGTGGAGCATGGATTCAGAAAGAACGACATCAAGTTCTCCAAAAAAACCATAGAAAAGCTGATCGACGACTACACCAGAGAGAGTGGAGTGCGTACGTTGGAGAAGCAGATCGCAGCTGTGATCCGTAAGATAACAAAGGAGGCCGCCACGAATGTGGTACATACTACCAAGGTGGAACCGTCCGACTTGGTTACTTTCTTGGGAGCACCCCGCTATACGCGCGATCGCTATCAAGGCAATGGCGATGCAGGCGTTGTGATCGGATTGGCTTGGACTTCGGTGGGAGGGGAGATCCTGTTCATCGAGACGAGTCTGCACCGCGGACGCGAACCGAAGCTCACGCTTACGGGTAATCTGGGCGATGTGATGAAAGAGTCGGCCGTAATAGCCTTGGATTATATTCGTGCCCATAGTGATGAGTTGGGCATCTCTCAGGAAATTTTCAATAATTGGCAGGTACACGTACATGTTCCCGAAGGTGCTATCCCGAAAGACGGTCCGAGTGCAGGTATTACGATGGTGACTTCGCTGGTGTCGGCTCTTACCCGTCGAAAAGTGCGGGCCGGTATTGCCATGACAGGAGAAATCACTCTAAGAGGAAAGGTGCTTCCTGTAGGTGGAATCAAGGAGAAGATATTGGCTGCCAAACGTTCCGGTATCACGGAAATAATCCTGTGCGAAGAGAATCGCAAGGACATAGAGGAGATAAACGATATCTATCTGAAGGGCTTGAAGTTCCACTATGTGTCCAACATTAACGAGGTGTTGAAAGAAGCTTTGCTCGAAGAGAAAGTCATCGATACCACCGATATATATTCCTTTGGCAAGAAGACCGAGGAGGAGAAAACCGAAAAAGTGGAAAAAACGGAGAAGAAGCAAAGAAAGAAA","7.30","2.31","91780","VKEDHMQEEMPILALRNMILFPGVAMPIMVGREKSLKLIRYVEKKGVYFGAVSQRDMDVEEPDRADLYDVGVVAEIIRVLEMPDGTTTAIVQGRQRFALQEITATEPFMKGRVKLLPDILPGKNKDHEFEALVSTIQDMSLKMMELMVERPPRELILSMRRNKNPMYQINFASANISTSIAVKQELLEISKMKDRGYRLLYLLHKELQVMELKASIQMKTREEMDKQQKEYFLQQQIKTIQEELGGNINDIEVQELRTKAATMKWSSEVAETFEKELRKLERLHPQSPDYSVQMQYVQTIISLPWGVFSKDNFNLKRAQSVLDRDHFGLEKVKERIIEHLAVLKMKGDMKSPIICLYGPPGVGKTSLGKSIAESLGRKYVRISLGGLHDEAEIRGHRRTYIGAMCGRIIQSLQRAGTSNPVFVLDEIDKIDSDYKGDPSSALLEVLDPEQNNAFHDNYLDIDFDLSHVLFIATANSLSSISRPLLDRMELIDVSGYIIEEKVEIAARHLIPKQLVEHGFRKNDIKFSKKTIEKLIDDYTRESGVRTLEKQIAAVIRKITKEAATNVVHTTKVEPSDLVTFLGAPRYTRDRYQGNGDAGVVIGLAWTSVGGEILFIETSLHRGREPKLTLTGNLGDVMKESAVIALDYIRAHSDELGISQEIFNNWQVHVHVPEGAIPKDGPSAGITMVTSLVSALTRRKVRAGIAMTGEITLRGKVLPVGGIKEKILAAKRSGITEIILCEENRKDIEEINDIYLKGLKFHYVSNINEVLKEALLEEKVIDTTDIYSFGKKTEEEKTEKVEKTEKKQRKK","672972 675533","TIGR ID: PG0620","ATP-dependent protease LA","Cytoplasm","Numerous significant hits with gapped BLAST to ATP-dependentproteases; e.g. residues 8-777 are 75% similar to ATP-dependentprotease (AE000680) of Aquifex aeolicus, residues 4-778 are 44%similar to ATP-dependent protease (Z99118) of Bacillus subtilis,residues 6-773 are 41% similar to ATP-dependent protease (AE001588) of Chlamydophila pneumoniae, residues 3-773 are 40% similar to ATP-dependent protease (AE001307) of Chlamydia trachomatis.This sequence is similar to BT0837.","
InterPro
IPR001984
Family
Peptidase S16, Lon protease
PR00830\"[358-377]T\"[597-613]T\"[676-695]T\"[706-725]T\"[729-747]TENDOLAPTASE
InterPro
IPR003111
Domain
Peptidase S16, lon N-terminal
PF02190\"[9-97]TLON
SM00464\"[9-205]TLON
InterPro
IPR003593
Domain
AAA+ ATPase, core
SM00382\"[350-503]TAAA
InterPro
IPR003959
Domain
AAA ATPase, core
PF00004\"[353-548]TAAA
InterPro
IPR004815
Family
Peptidase S16, ATP-dependent protease La
TIGR00763\"[11-774]Tlon: ATP-dependent protease La
InterPro
IPR008268
Active_site
Peptidase S16, active site
PS01046\"[679-687]TLON_SER
InterPro
IPR008269
Domain
Peptidase S16, lon C-terminal
PF05362\"[571-776]TLon_C
noIPR
unintegrated
unintegrated
G3DSA:1.10.8.60\"[494-586]Tno description
G3DSA:3.40.50.300\"[310-490]Tno description
PTHR10046\"[206-786]TATP DEPENDENT LON PROTEASE FAMILY MEMBER


","BeTs to 11 clades of COG0466COG name: ATP-dependent Lon protease, bacterial typeFunctional Class: OThe phylogenetic pattern of COG0466 is ----yqv-eb-hujgpOlinxNumber of proteins in this genome belonging to this COG is 1","***** IPB001984 (ATP-dependent serine proteases, Lon family) with a combined E-value of 1.2e-211. IPB001984A 220-245 IPB001984B 276-303 IPB001984C 304-358 IPB001984D 377-426 IPB001984E 436-475 IPB001984F 480-507 IPB001984G 534-554 IPB001984H 598-624 IPB001984I 684-738***** IPB001939 (AAA-protein (ATPases associated with various cellular activities)) with a combined E-value of 3.6e-06. IPB001939B 351-372","Residues 128-241 are 32% similar to a (PROTEASE HYDROLASE SERINE ATP-BINDING ATP-DEPENDENT LA) protein domain (PD002364) which is seen in LON2_MYXXA.Residues 627-759 are 54% similar to a (PROTEASE ATP-BINDING HYDROLASE SERINE PROTEIN) protein domain (PD001169) which is seen in LON_VIBPA.Residues 125-280 are 29% similar to a (PROTEIN COILED COIL REPEAT FILAMENT HEPTAD PATTERN CHAIN) protein domain (PD000002) which is seen in LON1_MYXXA.Residues 4-113 are 38% similar to a (PROTEASE ATP-DEPENDENT LA HYDROLASE SERINE ATP-BINDING) protein domain (PD003709) which is seen in LON2_MYXXA.Residues 9-224 are 21% similar to a (HYPOTHETICAL 24.5 KD PROTEIN) protein domain (PD111918) which is seen in Q55701_SYNY3.Residues 296-560 are 60% similar to a (PROTEIN ATP-BINDING PROTEASE SUBUNIT REGULATORY HOMOLOG) protein domain (PD000092) which is seen in LON1_BACSU.","","Thu Jun 14 12:54:34 MDT 2001","","Thu Jun 14 12:54:34 MDT 2001","Thu Jun 14 12:54:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:54:34 MDT 2001","Thu Jun 14 12:54:34 MDT 2001","","","Wed Mar 22 10:02:19 MST 2000","Wed Dec 3 09:38:50 2003","Wed Dec 20 16:31:36 MST 2000","Wed Jun 20 08:13:19 MDT 2001","Wed Jun 20 08:13:19 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Thu Apr 6 10:16:39 MDT 2000","Fri Jul 25 15:06:33 2008","-70% similar to PDB:1RR9 Catalytic domain of E.coli Lon protease (E_value = 1.4E_46);-70% similar to PDB:1RRE Crystal structure of E.coli Lon proteolytic domain (E_value = 1.4E_46);-59% similar to PDB:1X37 Structure of Bacillus subtilis Lon protease SSD domain (E_value = 3.4E_16);-64% similar to PDB:2ANE Crystal structure of N-terminal domain of E.Coli Lon Protease (E_value = 9.4E_14);-48% similar to PDB:1XHK Crystal structure of M. jannaschii Lon proteolytic domain (E_value = 1.8E_12);","","","Residues 9 to 205 (E-value = 6.7e-12) place PG0558 in the LON family which is described as ATP-dependent protease La (LON) domain (PF02190)Residues 353 to 548 (E-value = 1.7e-44) place PG0558 in the AAA family which is described as ATPase family associated with various cellular activities (AAA) (PF00004)Residues 571 to 776 (E-value = 1e-115) place PG0558 in the Lon_C family which is described as Lon protease (S16) C-terminal proteolytic domain (PF05362)","Wed Dec 3 09:38:50 2003","34540426","","","Fischer H, Glockshuber R. A point mutation within the ATP-binding site inactivates both catalytic functions of the ATP-dependent protease La (Lon) from Escherichia coli. FEBS Lett. Dec 12;356(1):101-3. PubMed: 7988699.2) Chin DT, Goff SA, Webster T, Smith T, Goldberg AL. Sequence of the lon gene in Escherichia coli. A heat-shock gene which encodes the ATP-dependent protease La. J Biol Chem 1988 Aug 25;263(24):11718-28. PubMed: 3042779.","","Thu Apr 6 10:55:00 MDT 2000","1","","","PG0620" "PG0559","675533","676078","546","ATGACTACAGCCAAGCCAAATACAGTAGAGCAGTTCGAGCACGTGATTGATATTTGTCGTGAGGTTTTTCAGAAAAAACTGCACGACTATGGAGCCTCGTGGCGAGTGATGCGTCCGTCGTCTCTGACCGATCAGCTTTATATCAAGGCCAACCGCATTCGAAATATTCAGATGAAAGGTTTGAGTAAGGTGGATGAAGGAGTGGAGTCTGAGTTTATAGGTGTCGTCAATTATGGAGTAATAGCTCTCATCCAATTGGAGCTGGGAGTAGCTGACACACCTAAGATGGAGACAGAGGAAGCTCTGCGCCTGTATGACCTCAAGATTCGTGAAGCCATGTCGCTGATGCTTGATAAGAATCATGACTATGGAGAGGCGTGGAGACAGATGCGTGTGTCATCCTTTGCCGACTTGATTCTGACTAAGGTATTTCGCACTAAAGAGATAGAAGATCTCGGAGGTGATACATATATATCCGAAGGGGTGGATGCCAACTACATGGATATGATCAACTATGCCATCTTCGCATTGATACAGTTGAACGGA","4.90","-6.32","20849","MTTAKPNTVEQFEHVIDICREVFQKKLHDYGASWRVMRPSSLTDQLYIKANRIRNIQMKGLSKVDEGVESEFIGVVNYGVIALIQLELGVADTPKMETEEALRLYDLKIREAMSLMLDKNHDYGEAWRQMRVSSFADLILTKVFRTKEIEDLGGDTYISEGVDANYMDMINYAIFALIQLNG","675533 676078","TIGR ID: PG0621","conserved hypothetical protein","Cytoplasm","One significant hits in gapped BLAST. Residues 8-181 are 58% similar to dbj|BAA74516.1 putative protein of Prevotella ruminicola.","
InterPro
IPR011630
Domain
Protein of unknown function DUF1599
PF07659\"[26-86]T\"[119-180]TDUF1599


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 11-86 are 56% similar to a (PUTATIVE PROTEIN) protein domain (PD208198) which is seen in Q9ZN62_PRERU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Jan 4 14:21:03 2001","Thu Jan 4 14:21:03 2001","Thu Jan 4 14:21:03 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","-43% similar to PDB:1H42 FERREDOXIN:NADP+ REDUCTASE MUTANT WITH THR 155 REPLACED BY GLY, ALA 160 REPLACED BY THR AND LEU 263 REPLACED BY PRO (T155G-A160T-L263P) (E_value = );-43% similar to PDB:1OGJ FERREDOXIN:NADP+ REDUCTASE MUTANT WITH LEU 263 REPLACED BY PRO (L263P) (E_value = );-43% similar to PDB:2BMW FERREDOXIN: NADP+REDUCTASE MUTANT WITH THR 155 REPLACED BY GLY, ALA 160 REPLACED BY THR, LEU 263 REPLACED BY PRO, ARG 264 REPLACED BY PRO AND GLY 265 REPLACED BY PRO (T155G-A160T-L263P-R264P-G265P) (E_value = );-43% similar to PDB:1B2R FERREDOXIN-NADP+ REDUCTASE (MUTATION: E 301 A) (E_value = );-43% similar to PDB:1BJK FERREDOXIN:NADP+ REDUCTASE MUTANT WITH ARG 264 REPLACED BY GLU (R264E) (E_value = );","","","No significant hits to the Pfam 11.0 database","","34540427","","","","","","1","","","PG0621" "PG0560","676078","677367","1290","ATGAAACGTTTCCTTGCTGAGCTTTCTCGAATCATATTAGGTCTGACCTTCGTTGTTTCGGGCTTTCTGAAGGCTATCGATCCGCAGGGAGGAGCGATCAAAATCAGTGAGTATTTTACTGTTTTTGCTTTGCCTAAGTCCGAGGGCTTATCCCTTATTCTTAGCATTTTGCTTTGCTGTAGTGAGTTCATCGTGGGAGCATTTCTCTTGATGGGTATCTACAGACGCATGGCAGCTCGCTTCATCTTTCTCTTTATGGCTGTCATGACTCCGCTTACACTCTATTTGGCCATATTCAACCCGGTGGCCGACTGTGGATGTTTCGGGGAAGCTTTTCTATTGACTAATTGGCACACATTCTTCAAAAATGTGGTTCTCTTTGCGGCAGCAGCTTTCTTGCTGAAAAAACCTCGTCGAATACAAACGCTATATTCCGTCAATGGACGTTGGCTTCCGGCTATTCTGGCCGTCAGTGGTATCATAATCTTTACCATAGCAAATCAGATCTATTTGCCGATGGTAGATTTCAGACCTTTCAAGGTCGGTAAATCGCTGCGTGAGCTTACGCAGGCACCTGCCGGTGCCCCGGAAGACGTATATGAATATGTCTTTGTGTACGAAAAGAATGGCAAGCGACAGGAGTTCGATATGGATCATCTGCCTGACGACAGCTGGACATACGTAGATCGGCACGAGAAACTGATTAAAAAAGGCTATACACCTCCCGTCACTGACTTCCTTTTGCTTCGTGGGGGTGAAGATGTTACATCCGAAATCGTCAATAAAAAGGGGATTACTCTCTTGCTCCTTTCACCCGATTGGGAGAATGCAAGCGACGATAAGATGGACAATATCAGTGAGATGTATGATTATGCTCAGGAACATGCTTGGGACTTCTACGGCGTATCGGCTTCCACTTCGGATGATATTTCCACATGGCGATACAATACCGGTGCTGATTACCCGATGCTTTTCCTCGATGCTGTTACCGTTAAGACCATTACACGCGGCAATCCCTCTTTGGTTATTTTGCGGGATGGTGTAATCCGAGGCAAGGTTAGTGATGCGAATTTCCCCGGTGTGGGACAAGCCCAAGCTTTTTTCGATCGTTATATAGGCAATGAGCTTTATCAACCTTCTTATTGGGGAAGGTTGCTTGTATTGGCTTTGTGGGTTATTCTCCTTTTGTTCGGATGTATTCGCAAGGTCGTTTTTTGCATCGGGTCGCTTCGTAAAGGAGTCGAAACAGAACAAAGCGAAACAGAAAATAATAGCAAGGCATTGAAATAT","6.90","-0.30","48560","MKRFLAELSRIILGLTFVVSGFLKAIDPQGGAIKISEYFTVFALPKSEGLSLILSILLCCSEFIVGAFLLMGIYRRMAARFIFLFMAVMTPLTLYLAIFNPVADCGCFGEAFLLTNWHTFFKNVVLFAAAAFLLKKPRRIQTLYSVNGRWLPAILAVSGIIIFTIANQIYLPMVDFRPFKVGKSLRELTQAPAGAPEDVYEYVFVYEKNGKRQEFDMDHLPDDSWTYVDRHEKLIKKGYTPPVTDFLLLRGGEDVTSEIVNKKGITLLLLSPDWENASDDKMDNISEMYDYAQEHAWDFYGVSASTSDDISTWRYNTGADYPMLFLDAVTVKTITRGNPSLVILRDGVIRGKVSDANFPGVGQAQAFFDRYIGNELYQPSYWGRLLVLALWVILLLFGCIRKVVFCIGSLRKGVETEQSETENNSKALKY","676078 677367","TIGR ID: PG0622","conserved hypothetical protein","Inner membrane, Cytoplasm","Its nearest neighbor in the NR database is gi:53715241 from Bacteroides fragilis YCH46.","
InterPro
IPR011637
Family
DoxX
PF07681\"[5-95]TDoxX
InterPro
IPR012336
Domain
Thioredoxin-like fold
SSF52833\"[234-373]TIPR012336


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Mar 3 13:32:26 2005","Thu Mar 3 13:32:26 2005","Thu Jan 4 14:22:08 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 3 13:32:26 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540428","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Thu Mar 3 13:34:03 2005","","1","","","PG0622" "PG0561","677402","678154","753","ATGAGAAAAAACATCGTAGCAGGCAACTGGAAAATGAACAAAACCCTCCAAGAGGGGCTTGCATTGGCAAAGGAGTTGGACGCAGCTTTGAAAGGGCGTACGATCAACTGTGACGTGATTATCGGAACCCCATTCATCCATTTGGCAAGTATTGCGGCAGCCATCGATACCACACGTATCGGAGTTGCAGCTGAAAACTGTGCCGATAAGGAGTCGGGTGCATATACCGGAGAGGTCTCTGCTGCTATGGTAGCCAGTACCGGTGCTCGGTATGTGATTATAGGACATAGCGAACGCCGTGCTTACTATCATGAAACATCCCCAATCCTGATGGAGAAGGTGAAGTTGGCTTTGTCCAATGGCTTGACCCCCATTTTCTGTGTTGGCGAAGTCTTGGAAGAGCGCGAAGCAGGCAAGCACTTCGAGGTAGTCGCTCGTCAGGTGGAAGAAGCCCTGTTTACTTTGGATCAGACCGACTTTGCCAAATTGATCCTTGCTTACGAGCCTGTGTGGGCCATCGGTACGGGTAAGACGGCTACGGCAGACCAAGCTCAAGAGATGCATGCACATATTCGTAAGAGTATAGCCGCTAAATATGGAAAAGAGGTTGCGAACGGTTGTTCCATTCTCTATGGAGGCAGTTGCAATGCAGCCAATGCCAAAGAACTCTTTAGCCGTGCGGATGTAGATGGTGGGCTTATCGGAGGGGCTTCTCTCTCGGTAGACAAATTCTTGCCTATCATCGAAGCATTC","6.30","-2.78","26805","MRKNIVAGNWKMNKTLQEGLALAKELDAALKGRTINCDVIIGTPFIHLASIAAAIDTTRIGVAAENCADKESGAYTGEVSAAMVASTGARYVIIGHSERRAYYHETSPILMEKVKLALSNGLTPIFCVGEVLEEREAGKHFEVVARQVEEALFTLDQTDFAKLILAYEPVWAIGTGKTATADQAQEMHAHIRKSIAAKYGKEVANGCSILYGGSCNAANAKELFSRADVDGGLIGGASLSVDKFLPIIEAF","677402 678154","TIGR ID: PG0623","triosephosphate isomerase","Cytoplasm","Numerous significant hits in gapped BLAST to triose phosphate isomerase protein; e.g. residues 1-249 are 42% similar to emb|CAB15397.1 triose phosphate isomerase of Bacillus subtilis, residues 2-248 are 44% similar to mb|CAA04016.1 triosephosphate isomerase of Lactobacillus delbrueckii, residues 1-249 are 42% similar to gb|AAA21679.1 triose phosphate isomerase of Bacillus subtilis.This sequence is similar to CT328 and BT3929.","
InterPro
IPR000652
Family
Triosephosphate isomerase
PD001005\"[1-250]TTriophos_ismrse
PTHR21139\"[1-251]TTriophos_ismrse
PF00121\"[4-248]TTIM
TIGR00419\"[5-242]Ttim
PS00171\"[166-176]TTIM
SSF51351\"[1-251]TTriophos_ismrse
InterPro
IPR013785
Domain
Aldolase-type TIM barrel
G3DSA:3.20.20.70\"[2-251]TAldolase_TIM


","BeTs to 16 clades of COG0149COG name: Triosephosphate isomeraseFunctional Class: GThe phylogenetic pattern of COG0149 is amtkyqvcebrhujgpolin-Number of proteins in this genome belonging to this COG is 1","***** IPB000652 (Triosephosphate isomerase) with a combined E-value of 1.9e-71. IPB000652A 5-15 IPB000652B 62-113 IPB000652C 164-188 IPB000652D 208-242","Residues 2-248 are 44% similar to a (ISOMERASE TRIOSEPHOSPHATE TIM GLYCOLYSIS) protein domain (PD001005) which is seen in TPIS_LACDE.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Mar 22 15:35:40 MST 2000","Sat Jan 3 10:14:48 2004","Thu Jan 4 14:25:33 2001","Tue Mar 13 17:11:10 MST 2001","Tue Mar 13 17:11:10 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 13 17:11:10 MST 2001","-59% similar to PDB:1B9B TRIOSEPHOSPHATE ISOMERASE OF THERMOTOGA MARITIMA (E_value = 1.6E_52);-60% similar to PDB:1YYA Crystal structure of TT0473, putative Triosephosphate Isomerase from Thermus thermophilus HB8 (E_value = 2.1E_52);-62% similar to PDB:2I9E Structure of Triosephosphate Isomerase of Tenebrio molitor (E_value = 2.1E_52);-61% similar to PDB:1AG1 MONOHYDROGEN PHOSPHATE BINDING TO TRYPANOSOMAL TRIOSEPHOSPHATE ISOMERASE (E_value = 1.8E_51);-61% similar to PDB:1IIG STRUCTURE OF TRYPANOSOMA BRUCEI BRUCEI TRIOSEPHOSPHATE ISOMERASE COMPLEXED WITH 3-PHOSPHONOPROPIONATE (E_value = 1.8E_51);","","","Residues 2 to 251 (E-value = 8.7e-120) place PG0561 in the TIM family which is described as Triosephosphate isomerase (PF00121)","Tue Mar 13 17:11:10 MST 2001","34540429","","","Leyva-Vazquez,M.A. and Setlow,P. 1994. Cloning and nucleotide sequences of the genes encoding triose phosphate isomerase, phosphoglycerate mutase, and enolase from Bacillus subtilis. J. Bacteriol. 176 (13): 3903-3910. PubMed: 8021172.","","Tue Mar 13 17:11:10 MST 2001","1","","","PG0623" "PG0562","678219","678722","504","ATGAAACCGATTTTCTTTTTTAGTCTCCTATTGCTTTCGTTGGTTTGCCATTCGTCATCGGAAGCTCAGGTTTCCACATCGGCGCATAGCAAAGCCCCGATCAGCATCTTCGAAGCTCTCAGTGCGGAGCACGAAGGAGAAGGCATCATCACCATCTATCAGCCTGCATCCGTAAAAGCTGCCGTGGGCAAGGTATCCGGACGTTTGGCCGGTTTGATCGAGGGCGAGAGCAATATCCGTTTGATCCAAGGCTATCGGATACAGGTATACAATGGCAATATGGCTGCCTCTAAGCGAGAAGCCAATCGACGAGCAGCTCAAATAACGCAGCTGCATCCCGAGATGCATTGCTATCTGACTTACCGAGCACCTTTTTGGCGGCTCCTTGTAGGAGATTTCAGCTCTCGTGAGGAAGCTGAAGAAGCTAAGCAACAACTCAAAAAATCATTCCCTTCATATGCACGGGAGATTTATGTCGTACGAGATAAGATTCGTCAAGGATAC","10.00","6.10","18837","MKPIFFFSLLLLSLVCHSSSEAQVSTSAHSKAPISIFEALSAEHEGEGIITIYQPASVKAAVGKVSGRLAGLIEGESNIRLIQGYRIQVYNGNMAASKREANRRAAQITQLHPEMHCYLTYRAPFWRLLVGDFSSREEAEEAKQQLKKSFPSYAREIYVVRDKIRQGY","678219 678722","TIGR ID: PG0624","conserved hypothetical protein","Cytoplasm, Periplasm","No hits found in gapped BLAST.","
InterPro
IPR007730
Domain
Sporulation/cell division region, bacteria
PF05036\"[81-156]TSPOR
noIPR
unintegrated
unintegrated
SSF110997\"[80-157]TSSF110997


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Sep 10 13:30:24 2004","Thu Jan 4 14:26:53 2001","Thu Jan 4 14:26:53 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Sep 10 13:30:24 2004","-47% similar to PDB:1ORN Structure of a Trapped Endonuclease III-DNA Covalent Intermediate: Estranged-Guanine Complex (E_value = );-47% similar to PDB:1ORP Structure of a Trapped Endonuclease III-DNA Covalent Intermediate: Estranged-Adenine Complex (E_value = );-47% similar to PDB:1P59 Structure of a non-covalent Endonuclease III-DNA Complex (E_value = );-48% similar to PDB:1BE3 CYTOCHROME BC1 COMPLEX FROM BOVINE (E_value = );-48% similar to PDB:1BGY CYTOCHROME BC1 COMPLEX FROM BOVINE (E_value = );","","","No significant hits to the Pfam 11.0 database","","34540430","","","","","","1","","","PG0624" "PG0563","678729","679307","579","ATGACAGAAATAGAAAAAGAAGAAGCCTGCAGCCGCTTGCAACAGCATTACGCCCAAGTACTGTCGTTGCTCGGCGAAGACCCTAAGCGTGAAGGGCTGCTCAAAACTCCGCTACGTGTGGCTAAGGCCATGCAGTTTCTGACCAAAGGATATAACGAGGATCCTGAAGCCATCCTTCGCGCAGCGATGTTCGAAGAAGACTATCAGCAAATGGTCATCGTCAAGGACATCGATTTCTTTTCGATGTGTGAGCACCACATGTTGCCGTTCTTCGGTAAGGCCCATGTGGGCTATATCCCCAATCGGTATATAACCGGACTGAGCAAGTTGCCCCGAGTGGTCGATGTATTTGCCCGTCGTCTTCAGGTACAGGAACGGCTGACTACACAAATCAAGGAGTGCATCCAGAATACGCTGAACCCTCTCGGGGTGATCGTCGTTATCGAAGCACAGCACATGTGCATGCAGATGCGTGGAGTGGAGAAGCAAAACTCTCTGACTACGACCAGTGACTTTACAGGAGCTTTTGAGGAATCGACCACTCGCGAAGAGTTTCTCAATCTGATCGGTCGCAGGCGA","6.70","-0.98","22287","MTEIEKEEACSRLQQHYAQVLSLLGEDPKREGLLKTPLRVAKAMQFLTKGYNEDPEAILRAAMFEEDYQQMVIVKDIDFFSMCEHHMLPFFGKAHVGYIPNRYITGLSKLPRVVDVFARRLQVQERLTTQIKECIQNTLNPLGVIVVIEAQHMCMQMRGVEKQNSLTTTSDFTGAFEESTTREEFLNLIGRRR","678729 679307","TIGR ID: PG0625","GTP cyclohydrolase I","Cytoplasm","Numerous significant hits in gapped BLAST to GTP cyclohydrolase I protein; e.g. residues 20-189 are 63% similar to dbj|BAA10406.1 GTP cyclohydrolase I of Synechocystis sp., residues 2-189 are 58% similar to gb|AAD38868.1|U66097_1 GTP cyclohydrolase I of Homo sapiens, residues 13-193 are 60% similar to gb|AAG06826.1|AE004764_12 GTP cyclohydrolase I precursor of Pseudomonas aeruginosa.","
InterPro
IPR001474
Family
GTP cyclohydrolase I
PD003330\"[3-189]TGTP_cyclohydroI
PF01227\"[70-174]TGTP_cyclohydroI
TIGR00063\"[13-191]TfolE
PS00859\"[70-86]TGTP_CYCLOHYDROL_1_1
PS00860\"[118-128]TGTP_CYCLOHYDROL_1_2
noIPR
unintegrated
unintegrated
G3DSA:1.10.286.10\"[5-58]TG3DSA:1.10.286.10
G3DSA:3.30.1130.10\"[59-193]TG3DSA:3.30.1130.10
PTHR11109\"[18-192]TPTHR11109
SSF55620\"[1-191]TSSF55620


","BeTs to 8 clades of COG0302COG name: GTP cyclohydrolase IFunctional Class: HThe phylogenetic pattern of COG0302 is ----yq-cebrhuJ------xNumber of proteins in this genome belonging to this COG is 1","***** IPB001474 (GTP cyclohydrolase I) with a combined E-value of 2.3e-92. IPB001474A 24-51 IPB001474B 64-97 IPB001474C 98-150 IPB001474D 157-188","Residues 20-189 are 63% similar to a (GTP CYCLOHYDROLASE I HYDROLASE) protein domain (PD003330) which is seen in GCH1_SYNY3.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Jan 4 15:54:24 2001","Thu Jan 4 15:54:24 2001","Thu Jan 4 15:54:24 2001","Thu Feb 22 19:03:32 MST 2001","Thu Feb 22 19:03:32 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 22 19:03:32 MST 2001","-72% similar to PDB:1FB1 CRYSTAL STRUCTURE OF HUMAN GTP CYCLOHYDROLASE I (E_value = 1.7E_58);-71% similar to PDB:1IS7 Crystal structure of rat GTPCHI/GFRP stimulatory complex (E_value = 3.8E_58);-71% similar to PDB:1IS8 Crystal structure of rat GTPCHI/GFRP stimulatory complex plus Zn (E_value = 3.8E_58);-71% similar to PDB:1WPL Crystal structure of the inhibitory form of rat GTP cyclohydrolase I/GFRP complex (E_value = 3.8E_58);-72% similar to PDB:1WM9 Structure of GTP cyclohydrolase I from Thermus thermophilus HB8 (E_value = 1.7E_55);","","","Residues 70 to 174 (E-value = 9.2e-47) place PG0563 in the GTP_cyclohydroI family which is described as GTP cyclohydrolase I (PF01227)","Fri Apr 20 13:05:16 MDT 2001","34540431","","","","","","1","","","PG0625" "PG0564","679541","680404","864","ATGTGTCATTTAATTCAAAATGTTATGAGAAAGTTGTTATTTGTTTCGGTATTGGGCTTATGCTTTAGCCTTATCGGTTTGACACAAGAGACTCTTGTTACCACTGGTTTTGAAGGGCCGGGATTTGACCCGGGTTGGACTACGGGAGTATCCGATGCTATTACGACAAGCCCCCAGCCCTATCCTTCCACCGGTCTGGAATCTTGGGAGCAGTGGGATTTGACGGATCCGCAAGGCGGTTTCGGCTATGTGCATTCCGGTGATTCTGCTGCGTGGATAGGTGCCACACCCAACCAGACGTCTATACACGACTGGCTGATGACTCCGAAGTTCAAGGTGCCTACCGGCGGTTCTACCCTGATCAAGTACTGGCTATGGTATCATTCCGAAGCTATGTATGTGAATAAGTTCTATATCATGATATATGACTATTCCAAAGACGCTTGGGAGCAGGGGTATTTATTGGCCAATGAGTTCAACTCACCTCTTCACTACGTGGAAGAATACACTTTCGATTTGTCTCAATGGAAGGGGAAAGACATCAAGGTGGCTTTCGTGAAAAACGGTACCTATCAAATGGCTATGGATGACATCAGAATCCTGAACTACCAAAGCCTGCAAGAGGTAGAACAAGAAGGTATTCGGATTTATCCCAATCCGACTACGGATAGGCTGATGCTGGACAATGTGGGTGATGTAAGCGCCATTCGTATTATAGATATGTATGGCAGGCCGCTTGTGGTGGTCGGCAATGCCGGTAGCTCTAAGTTGAGTATCGATGTCTCCGATTTGGGACGGGGCAATTATGTCGTCGATATGCAGTGCAAAGGCCATAGGAAAATCAGCCGGCTGATAACAAAAGAG","5.00","-7.69","32534","MCHLIQNVMRKLLFVSVLGLCFSLIGLTQETLVTTGFEGPGFDPGWTTGVSDAITTSPQPYPSTGLESWEQWDLTDPQGGFGYVHSGDSAAWIGATPNQTSIHDWLMTPKFKVPTGGSTLIKYWLWYHSEAMYVNKFYIMIYDYSKDAWEQGYLLANEFNSPLHYVEEYTFDLSQWKGKDIKVAFVKNGTYQMAMDDIRILNYQSLQEVEQEGIRIYPNPTTDRLMLDNVGDVSAIRIIDMYGRPLVVVGNAGSSKLSIDVSDLGRGNYVVDMQCKGHRKISRLITKE","679541 680404","TIGR ID: PG0626. Reported by Chen et al., 2004, to be highly divergent in ATCC 33277.","hypothetical protein","Extracellular, Cytoplasm","This sequence corresponds to gi:34396745 in Genbank.","
noIPR
unintegrated
unintegrated
signalp\"[1-28]?signal-peptide
tmhmm\"[12-27]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Tue Feb 22 13:55:32 2005","Thu Jan 4 15:57:47 2001","Thu Mar 3 13:39:54 2005","Thu Jan 4 15:57:47 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 22 13:55:32 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540432","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293Chen T, Hosogi Y, Nishikawa K, Abbey K, Fleischmann RD, Walling J, Duncan MJ.Comparative whole-genome analysis of virulent and avirulent strains of Porphyromonas gingivalis.J Bacteriol. 2004 Aug;186(16):5473-9.PMID: 15292149","","Thu Mar 3 13:39:54 2005","","1","","","PG0626" "PG0564.1","680535","680897","363","ATGGACTGTAGGGGGCGGTGCTTTTCCGCTATTGTGTGTAGGCTTCTCTCTTTCTCCTCCGATACCTTGAGATCGGGTGTTGTGTTTCGAGCTAATAAGGTGAGTTTATACGAGAGGATACTATGGTCTCACATGAGAGGATACTATGGTCTCATACGAGAGGATACTATGGTCTCCTATGAGAGAATACTATGGTCTCACATGAGAGGATACTATGGTCTCATACGAGAGGATACTATGGTCTCCTATGAGAGGATACTATGGTCTCATACGAGAGGATACTATGGTCTCATACGAGAGGATACTATGGTCTACTATGAGAGGATACTATGGTCTCATACGAGAGGATACTATGGTCTCCTA","","","14610","MDCRGRCFSAIVCRLLSFSSDTLRSGVVFRANKVSLYERILWSHMRGYYGLIREDTMVSYERILWSHMRGYYGLIREDTMVSYERILWSHTRGYYGLIREDTMVYYERILWSHTRGYYGLL","","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No significant hits in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-25]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Thu Jan 4 16:00:42 2001","Thu Jan 4 16:00:42 2001","Thu Jan 4 16:00:42 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","PG0564.1 is paraplogously related to PG0527.1 and PG1887.1.","Thu Jan 4 16:00:42 2001","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG0565","681526","681236","291","ATGAGTATGAACATCTACGTAGGGAATCTGAACTATCGGGTTCGCGAAGAAGACCTCACAGGTCTGTTGCAACAGTATGGCGCCGTAACGAGCGCAAGAGTAATCACAGACAGAGAAACCGGCCGCTCACGCGGATTCGGCTTCGTCGAAATGGAAGACGAGAATGATGCACGCCGTGCCATCGAAGAGCTGTTCGATCAGGAATTCCAAGGTCGCAAGCTGATCGTCAAAGAGGCATTGGAACGTCCCGAGCGTGCTCCTCGCCGTACTTTCCGACACGAAGATCGCTAT","5.40","-1.76","11484","MSMNIYVGNLNYRVREEDLTGLLQQYGAVTSARVITDRETGRSRGFGFVEMEDENDARRAIEELFDQEFQGRKLIVKEALERPERAPRRTFRHEDRY","681526 681236","TIGR ID: PG0627. Reported by Chen et al., 2004, to be highly divergent in ATCC 33277.","RNA binding protein","Cytoplasm","Numerous significant hits in gapped BLAST to RNA binding protein; e.g. residues 1-76 are 53% similar to gbAAC65342.1 RNA-binding protein, putative of Treponema pallidum, residues 3-76 are 54% similar to gbAAA85379.1 RNA binding protein of Synechocystis sp., residues 1-76 are 50% similar to gbAAC47624.1 putative RNA binding protein of Brugia malayi.","
InterPro
IPR000504
Domain
RNA-binding region RNP-1 (RNA recognition motif)
PF00076\"[5-76]TRRM_1
SM00360\"[4-77]TRRM
PS50102\"[3-81]TRRM
InterPro
IPR012677
Domain
Nucleotide-binding, alpha-beta plait
G3DSA:3.30.70.330\"[2-95]Ta_b_plait_nuc_bd
noIPR
unintegrated
unintegrated
PTHR10432\"[3-85]TPTHR10432
PTHR10432:SF31\"[3-85]TRRM_Gly_rich
SSF54928\"[2-85]TSSF54928


","BeTs to 4 clades of COG0724COG name: RNA-binding proteins (RRM domain)Functional Class: KThe phylogenetic pattern of COG0724 is ----Y--C----uj---l---Number of proteins in this genome belonging to this COG is 1","***** IPB000504 (RNA-binding region RNP-1 (RNA recognition motif)) with a combined E-value of 2e-06. IPB000504 5-32***** PF00658 (Poly-adenylate binding protein, unique domain) with a combined E-value of 6.1e-06. PF00658B 41-77","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Tue Feb 22 13:56:17 2005","Thu Jan 4 16:04:04 2001","Tue Feb 22 13:56:17 2005","Thu Jan 4 16:04:04 2001","Tue Feb 22 13:56:17 2005","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 22 13:56:17 2005","-62% similar to PDB:1P1T NMR Structure of the N-terminal RRM domain of Cleavage stimulation factor 64 KDa subunit (E_value = 6.3E_12);","","","Residues 5 to 76 (E-value = 1.6e-26) place PG0565 in the RRM_1 family which is described as RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (PF00076)","","34540433","","Chen T, Hosogi Y, Nishikawa K, Abbey K, Fleischmann RD, Walling J, Duncan MJ.Comparative whole-genome analysis of virulent and avirulent strains of Porphyromonas gingivalis.J Bacteriol. 2004 Aug;186(16):5473-9.PMID: 15292149","","Tue Feb 22 13:56:17 2005","","1","","","PG0627" "PG0566","682530","681778","753","ATGGAAGAAAATACAACCATGGTGCTGCGCACCGAAGATCTGGTCAAACGCTACCGGAACCGTACGGTCGTGAATCACGTATCGATAGAGGTTCGGCAAGGAGAGATCGTAGGACTGCTCGGGCCGAACGGAGCCGGCAAGACGACGACTTTCTATATGACCACGGGGCTGGTCGTCCCCAACGAAGGACGGATATTCCTCAATGATCAGGACATCACCCAATACCCCGTCTACAAACGAGCGCGTGCCGGCATCGGCTATCTGGCACAAGAGGCATCCATATTCCGCAAAATGTCCGTGGAGGACAACATCCTCTCCGTCCTCGAAATGGCCGGACTGCCCAAGACCTATCAGCACGAAAAGCTGGAAAGCCTGATAGCCGAATTTCACCTTGAGAAAGTACGCAAAAACCTTGGCGACCGCCTCTCCGGCGGCGAGCGACGCCGTGCCGAGATAGCCCGCTGCCTGGCTATATCGCCTCGCTTCATCATGCTGGACGAACCCTTTGCCGGTGTCGATCCTATCGCCGTACAGGACATTCAGGCCATTGTGGCCAAACTCAAGGACAAAAACATCGGCATCCTCATCACCGACCACAACGTCCACGAAACGCTCAGCATCACGGATCGCGCTTACCTCCTTTTCGAGGGCAAAGTGCTGTATCAGGGCACGGCCGAAGAGCTGGCTGCGAACGAAGTCGTAAGGGAAAAGTATCTGGGACGCGACTTCGAACTCCGCCGCAAACGATTCGAC","7.70","1.18","28510","MEENTTMVLRTEDLVKRYRNRTVVNHVSIEVRQGEIVGLLGPNGAGKTTTFYMTTGLVVPNEGRIFLNDQDITQYPVYKRARAGIGYLAQEASIFRKMSVEDNILSVLEMAGLPKTYQHEKLESLIAEFHLEKVRKNLGDRLSGGERRRAEIARCLAISPRFIMLDEPFAGVDPIAVQDIQAIVAKLKDKNIGILITDHNVHETLSITDRAYLLFEGKVLYQGTAEELAANEVVREKYLGRDFELRRKRFD","682530 681778","See ABC Transporters Analysis.TIGR ID: PG0628","ABC transporter protein","Cytoplasm","PG0566 is essentially identical to a previously sequencedP.gingivalis protein in GenBank, CAA65866.Numerous significant hits in gapped BLAST to ABC transporter protein; e.g. residues 3-245 are56 % similar to dbj|BAA16717.1 ABC transporter of Synechocystis sp., residues 8-245 are 55% similar to (gi:141101) probable ABC transporter ATP-binding protein of Thiobacillus ferrooxidans, residues 8-245 are 54% similar to gb|AAF95669.1 ABC transporter, ATP-binding protein of Vibrio cholerae.This sequence is similar to BT3837.","
InterPro
IPR003439
Domain
ABC transporter related
PD000006\"[142-184]TABC_transporter
PF00005\"[34-217]TABC_tran
PS00211\"[142-156]?ABC_TRANSPORTER_1
PS50893\"[9-241]TABC_TRANSPORTER_2
InterPro
IPR003593
Domain
AAA+ ATPase, core
SM00382\"[33-206]TAAA
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[2-245]TG3DSA:3.40.50.300
PTHR19222\"[9-238]TPTHR19222
PTHR19222:SF15\"[9-238]TPTHR19222:SF15
SSF52540\"[5-245]TSSF52540


","BeTs to 9 clades of COG1137COG name: ABC-type (unclassified) transport system, ATPase componentFunctional Class: RThe phylogenetic pattern of COG1137 is -----qvce--huj--olinxNumber of proteins in this genome belonging to this COG is 1","***** IPB001617 (ABC transporters family) with a combined E-value of 6.3e-10. IPB001617A 39-54 IPB001617B 143-154","Residues 187-240 are identical to a (ATP-BINDING PROTEIN TRANSPORT TRANSPORTER ABC MEMBRANE) protein domain (PD000174) which is seen in Q51842_PORGI.Residues 14-226 are 23% similar to a (C24F3.5 PROTEIN) protein domain (PD218211) which is seen in Q21213_CAEEL.Residues 1-75 are 86% similar to a (GPDXJ, PUT, AND YHBG-PG) protein domain (PD057588) which is seen in Q51842_PORGI.Residues 24-73 are 70% similar to a (ATP-BINDING TRANSPORT PROTEIN TRANSPORTER ABC) protein domain (PD000005) which is seen in P72710_SYNY3.Residues 141-183 are identical to a (ATP-BINDING TRANSPORT PROTEIN TRANSPORTER ABC) protein domain (PD000006) which is seen in Q51842_PORGI.Residues 76-139 are 98% similar to a (ATP-BINDING TRANSPORT ABC TRANSPORTER) protein domain (PD004221) which is seen in Q51842_PORGI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Fri Dec 26 14:07:40 2003","Thu Jan 4 16:13:47 2001","Fri Dec 26 14:07:40 2003","Thu Jan 4 16:13:47 2001","Mon Apr 2 18:32:24 MDT 2001","Mon Apr 2 18:32:24 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG0566 is 22-30% similar to:PG0844 ABC transporter protein,PG0921 ABC transporter (ATP-binding protein ABC),PG0618 ABC transport component, ATPase component,PG1477 ABC transporter ATPase,PG1497 ABC transporter protein, MSD-NBD fusion protein,PG1211 ABC transporter, ATP-binding protein,PG1451 ABC transporter protein, ATP-binding protein,PG1048 ABC transporter, ATP-binding protein,PG0903 ABC transporter ATP binding protein,PG0233 ABC transporter ATPase,PG0584 ferric enterobactin transport protein/iron(III) dic...,PG1917 cell-division ATP-binding protein,PG1533 ABC transporter,PG0605 ABC transport system component; ATP-binding protein...,PG0254 ABC transporter/ATP-binding protein,PG1084 ABC transporter ATP-binding protein,PG1049 ABC transporter protein,PG1923 ABC transporter (ATP-binding protein).","Mon Apr 2 18:32:24 MDT 2001","Mon Apr 2 18:32:24 MDT 2001","-54% similar to PDB:1JI0 Crystal Structure Analysis of the ABC transporter from Thermotoga maritima (E_value = 4.1E_32);-55% similar to PDB:1Z47 Structure of the ATPase subunit CysA of the putative sulfate ATP-binding cassette (ABC) transporter from Alicyclobacillus acidocaldarius (E_value = 3.8E_30);-52% similar to PDB:1G6H CRYSTAL STRUCTURE OF THE ADP CONFORMATION OF MJ1267, AN ATP-BINDING CASSETTE OF AN ABC TRANSPORTER (E_value = 1.5E_29);-52% similar to PDB:1G9X CHARACTERIZATION OF THE TWINNING STRUCTURE OF MJ1267, AN ATP-BINDING CASSETTE OF AN ABC TRANSPORTER (E_value = 3.3E_29);-52% similar to PDB:1GAJ CRYSTAL STRUCTURE OF A NUCLEOTIDE-FREE ATP-BINDING CASSETTE FROM AN ABC TRANSPORTER (E_value = 3.3E_29);","","","Residues 34 to 217 (E-value = 2.6e-55) place PG0566 in the ABC_tran family which is described as ABC transporter (PF00005)","Mon Apr 2 18:32:24 MDT 2001","34540434","","","","","","1","","","PG0628" "PG0568","683455","682592","864","ATGAAGAAAATAGCCATATTCGGCAGCCGTCACAAGAGCGAACAGGGAGCTTCCATCAAGGCTTTGATCCTGAAGCTGGAAGAAGCCGGCACACCTCTTTATATAGAGCGCAAATTCCTCTCCTTTCTTAAGCAGGATCTGGACTTCCATCCGGCCATTTGCGGAGTGATAGACACCCTGCCCGAGCATATCGACTACGTGATCTGTATGGGCGGTGACGGTACATTCCTGCGCACGGCGCATCAAATCGGCGTTTCGCAGATCCCTGTCTTGGGCGTAAATACCGGCCGACTGGGCTTCCTCACCGATGTCGATTGCCACGAGGCTTCGGAGCTGATCACACGCCTGCTGGACGGCGACTTCACCATCGAGACCCGTTCCCTGCTGGAAGTGACCGAAGACAACGGCTCCTCTCCCTCCTACGCCCTGAACGAAGCAGCCATACTCAAGCGTGAAACCGGTTCGATGATTCGGGTGAATGCCTGCCTCAACGACGACTATCTGGCGGCTTACGATGCCGACGGCCTCGTGGTGGCCACGCCCTCCGGCTCCACAGCCTACTCGCTGAGCGGGAACGGGCCTATCATCATGCCTGCCTGTCGGAACTTCGTCCTTACGCCCATCGCCCCCCACTCGCTGAATATGCGTCCGCTGGTCGTTCCGGACGACACGGTGATCCGCCTCGAAGTGGATTCGCGCAGTCGGAATTACCTCTTGGTGCTCGACGGACGAACCAGAACGTTGCCCTGCGATACCTCCATCCTGCTCAAACGAGCTCCTCACACGCTGCGAATGATCCGTCTGCGTCCGCACTCCTTCGCCGAAACCCTGAGGCGTAAGCTCATGTGGGGAGCAGCCGTAAGA","7.20","0.65","31717","MKKIAIFGSRHKSEQGASIKALILKLEEAGTPLYIERKFLSFLKQDLDFHPAICGVIDTLPEHIDYVICMGGDGTFLRTAHQIGVSQIPVLGVNTGRLGFLTDVDCHEASELITRLLDGDFTIETRSLLEVTEDNGSSPSYALNEAAILKRETGSMIRVNACLNDDYLAAYDADGLVVATPSGSTAYSLSGNGPIIMPACRNFVLTPIAPHSLNMRPLVVPDDTVIRLEVDSRSRNYLLVLDGRTRTLPCDTSILLKRAPHTLRMIRLRPHSFAETLRRKLMWGAAVR","683455 682592 [Shadowed by 749]","TIGR ID: PG0629","possible inorganic polyphosphate/ATP-NAD kinase","Cytoplasm","PG0523 is essentially identical to a previously sequenced P.gingivalis protein in GenBank, CAA65865, a predicted inorganic polyphosphate/ATP-NAD kinase. Numerous significant hits in gapped BLAST to predicted NAD family kinases; e.g. residues 65-284 are 34% similar to gb|AAB85370.1 in Methanothermobacter thermoautotrophicus, residues 30-284 are 33% similar to gb|AAF41220.1| in Neisseria meningitidis, residues 1-284 are 32% similar to dbj|BAA18530.1| in Synechocystis sp.","
InterPro
IPR002504
Family
ATP-NAD/AcoX kinase
PF01513\"[3-259]TNAD_kinase
InterPro
IPR014425
Family
ATP-NAD(H) kinase
PIRSF004914\"[64-288]TATP-NAD_NADH_kin
noIPR
unintegrated
unintegrated
G3DSA:2.60.200.30\"[131-259]TG3DSA:2.60.200.30
PIRSF500155\"[2-288]TNAD_NADH_kin_pro
PTHR20275\"[57-284]TPTHR20275
SSF111331\"[2-284]TSSF111331


","BeTs to 16 clades of COG0061COG name: Predicted kinaseFunctional Class: RThe phylogenetic pattern of COG0061 is amtkYqvCeBrhujgpol--xNumber of proteins in this genome belonging to this COG is 1","***** PF01513 (Domain of unknown function) with a combined E-value of 2e-38. PF01513A 65-104 PF01513B 172-215 PF01513C 216-221","Residues 61-268 are 87% similar to a (PROTEIN CONSERVED CHROMOSOME PUTATIVE OF I INTERGENIC) protein domain (PD002781) which is seen in Q51841_PORGI.Residues 1-60 are identical to a (PUT PROTEIN) protein domain (PD120258) which is seen in Q51841_PORGI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed May 30 14:33:55 MDT 2001","Wed May 30 14:33:55 MDT 2001","Thu Jan 4 16:32:19 2001","Fri Apr 6 12:05:10 MDT 2001","Fri Apr 6 12:05:10 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Apr 6 12:05:10 MDT 2001","-50% similar to PDB:2AN1 Structural Genomics, The crystal structure of a putative kinase from Salmonella typhimurim LT2 (E_value = 7.1E_31);-51% similar to PDB:1U0R Crystal structure of Mycobacterium tuberculosis NAD kinase (E_value = 1.8E_26);-51% similar to PDB:1U0T Crystal structure of Mycobacterium tuberculosis NAD kinase (E_value = 1.8E_26);-51% similar to PDB:1Y3H Crystal Structure of Inorganic Polyphosphate/ATP-NAD kinase from Mycobacterium tuberculosis (E_value = 1.8E_26);-51% similar to PDB:1Y3I Crystal Structure of Mycobacterium tuberculosis NAD kinase-NAD complex (E_value = 1.8E_26);","","","Residues 3 to 269 (E-value = 5.9e-98) place PG0568 in the NAD_kinase family which is described as ATP-NAD kinase (PF01513)","Fri Apr 6 12:05:10 MDT 2001","34540435","","Wallace,A.M. and Roberts,I.S., Cloning of pyridoxal phosphate from P.gingivalis, Unpublished, Dept. of Microbiology, Medical Sciences Building, University Road, Leicester LE19HN, UK.","","Fri Apr 6 12:05:10 MDT 2001","","1","","","PG0629" "PG0569","683533","684246","714","ATGACAAGGCTAAGCGTAAACGTAAATAAGATAGCTACCCTCCGCAATGCACGCGGAGGCAATGTCCCCGATGTCCTCCGAGTGGCTCTCGACTGTGAGCGGTTCGGTGCACAGGGGATTACCGTCCATCCGCGTCCCGACGAACGCCATATCCGTCGGTCGGATGTGTACGACCTCAAAAAGGCACTGACCACAGAGTTCAACATAGAGGGCAATCCCGACGAGCGTTTCATCCGTCTGATCGAGGAAATCCGTCCCGAGCAGGTGACCATGGTACCCGATGCTCCCGATGTCCTGACCTCCAATGCCGGATGGGATGTGGCCCGAAACTACGACCATCTCTGCCGTCTGGTGGAGCGGTTCCATGCCTGGGGTATCAGGACTTCCATATTCATCGATACCGACTTGGACAATATCTCGTGGGCTGCCAAGACAGGTACAGACCGGATAGAGCTTTACACCGAGCCGTATGCAGCCGCCTATCATAAGGACATGGCTGCTGCCGTACAGCCCTATGTCAAGGCTTCGGTACACGCTCATTCGCTCGGTCTCGGTATCAATGCCGGACACGATTTGAATCTGGACAACCTCCGTTACTTTGCCGAACGACTGCCCTATTTGGACGAAGTTTCCATCGGCCACGCACTGATTGCCGATGCTCTCTATTTGGGACTGGAGGAGACTATCAGACAATATCGAGACCAACTTGCGTTA","5.80","-5.92","26935","MTRLSVNVNKIATLRNARGGNVPDVLRVALDCERFGAQGITVHPRPDERHIRRSDVYDLKKALTTEFNIEGNPDERFIRLIEEIRPEQVTMVPDAPDVLTSNAGWDVARNYDHLCRLVERFHAWGIRTSIFIDTDLDNISWAAKTGTDRIELYTEPYAAAYHKDMAAAVQPYVKASVHAHSLGLGINAGHDLNLDNLRYFAERLPYLDEVSIGHALIADALYLGLEETIRQYRDQLAL","683533 684246","TIGR ID: PG0630","pyridoxal phosphate biosynthetic protein","Cytoplasm","PG0523 is identical to a previously sequencedP.gingivalis, strain W83, protein in GenBank, CAA65867. Numerous significant hits in gapped BLAST to pyridoxal phosphate biosynthetic protein; e.g. residues 2-236 are 48% similar to gb|AAF82873.1|AE003859_14 pyridoxal phosphate biosynthetic protein of Xylella fastidiosa, residues 4-233 are 38% similar to gb|AAG04162.1|AE004512_5 pyridoxal phosphate biosynthetic protein PdxJ of Pseudomonas aeruginosa, residues 4-229 are 36% similar to gb|AAF95600.1| pyridoxal phosphate biosynthetic protein PdxJ of Vibrio cholerae.","
InterPro
IPR004569
Family
Pyridoxal phosphate biosynthetic protein PdxJ
PD013657\"[8-233]TPdxJ
PF03740\"[2-238]TPdxJ
TIGR00559\"[3-238]TpdxJ
InterPro
IPR013785
Domain
Aldolase-type TIM barrel
G3DSA:3.20.20.70\"[3-236]TAldolase_TIM
noIPR
unintegrated
unintegrated
SSF63892\"[2-236]TSSF63892


","BeTs to 4 clades of COG0854COG name: Pyridoxal phosphate biosynthesis protein PdxJFunctional Class: HThe phylogenetic pattern of COG0854 is -----q-ce---uj-------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 23-233 are 94% similar to a (PYRIDOXAL PHOSPHATE BIOSYNTHETIC PROTEIN) protein domain (PD013657) which is seen in PDXJ_PORGI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Jan 4 16:41:28 2001","Fri Apr 6 11:56:47 MDT 2001","Thu Jan 4 16:41:28 2001","","Fri Apr 6 11:56:47 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Apr 6 11:56:47 MDT 2001","-54% similar to PDB:1HO1 CRYSTAL STRUCTURE OF PYRIDOXINE 5'-PHOSPHATE SYNTHASE (E_value = 1.8E_34);-54% similar to PDB:1HO4 CRYSTAL STRUCTURE OF PYRIDOXINE 5'-PHOSPHATE SYNTHASE IN COMPLEX WITH PYRIDOXINE 5'-PHOSPHATE AND INORGANIC PHOSPHATE (E_value = 1.8E_34);-54% similar to PDB:1IXN Enzyme-Substrate Complex of Pyridoxine 5'-Phosphate Synthase (E_value = 1.8E_34);-54% similar to PDB:1IXO Enzyme-analogue substrate complex of Pyridoxine 5'-Phosphate Synthase (E_value = 1.8E_34);-54% similar to PDB:1IXP Enzyme-phosphate Complex of Pyridoxine 5'-Phosphate synthase (E_value = 1.8E_34);","","","Residues 2 to 238 (E-value = 1.8e-88) place PG0569 in the PdxJ family which is described as Pyridoxal phosphate biosynthesis protein PdxJ (PF03740)","Fri Apr 6 11:56:47 MDT 2001","34540436","","Wallace,A.M. and Roberts,I.S., Cloning of pyridoxal phosphate from P.gingivalis, Unpublished., Dept. of Microbiology, Medical Sciences Building, University Road, Leicester LE19HN, UK.","","Fri Apr 6 12:20:47 MDT 2001","","1","","","PG0630" "PG0570","684407","685018","612","ATGGATCTGGCTCTCAAAGGCGGTTGGATCATGATCGTATTGGCTGCTCTTTCGCTCTTGGCCATCTACATATTCGTTCGCAAGGTGATGGAGATCAGGGCTGCCGGCAGAGAAGACAATTCGTTCATGGAGCGGATCAAGGATTATATCCACGAGGGTAAAATAGAATCGGCCATGCGTCTTTGTCAGGACAGGGCTACCCCTTCTGCCCGTATGATAGCCAAGGGGATCACCCGACTGGGACGACCGATGAACGACATACTGGTAGCCGTCGAGAATACCGGAAACATCGAAATTGGTAAGCTGGAAAAAGGACTGCCTATTATTGCTACCATTGCAGCCGGAGCACCTATGATCGGTTTCTTGGGTACCGTAACGGGTATGGTGCGTGCTTTCTTCGATATGGCCAATGCCGGTAACGGCGGGGTGGACGTAGCTCTCCTCTCGGGAGGTATATACGAAGCCTTGGTAACGACTGTAGGCGGTCTCGTTGTCGGTATCGTAACGCTTTTTGCCTACAACTATCTCGTAGCTCAGGTGGATAAGGTCGTCAATAAGATGGAAACCAAGACTCTTGAGTTTATGGATCTCCTTAACGAACCCATCAAAAAA","8.40","1.19","22038","MDLALKGGWIMIVLAALSLLAIYIFVRKVMEIRAAGREDNSFMERIKDYIHEGKIESAMRLCQDRATPSARMIAKGITRLGRPMNDILVAVENTGNIEIGKLEKGLPIIATIAAGAPMIGFLGTVTGMVRAFFDMANAGNGGVDVALLSGGIYEALVTTVGGLVVGIVTLFAYNYLVAQVDKVVNKMETKTLEFMDLLNEPIKK","684287 685018","TIGR ID: PG0631","conserved hypothetical protein (probable biopolymer transport)","Inner membrane, Cytoplasm","Numerous significant hits in gapped BLAST to probable biopolymer transport protein; e.g. residues 1-199 are 27% similar to gb|AAF83889.1|AE003944_6 conserved hypothetical protein of Xylella fastidiosa, residues 2-198 are 30% similar to gb|AAG06371.1|AE004723_15 probable tolQ-type transport protein of Pseudomonas aeruginosa, residues 1-188 are 31% similar to gb|AAF10032.1|AE001904_8 biopolymer transport protein, putative of Deinococcus radiodurans .","
InterPro
IPR002898
Family
MotA/TolQ/ExbB proton channel
PF01618\"[55-192]TMotA_ExbB


","BeTs to 7 clades of COG0811COG name: Biopolymer transport proteinsFunctional Class: NThe phylogenetic pattern of COG0811 is --t--Q-CE--HUJ----inxNumber of proteins in this genome belonging to this COG is 2","***** BP03317 (TRANSPORT PROTEIN TRANSMEMBRA) with a combined E-value of 1.4e-21. BP03317A 10-28 BP03317B 109-132 BP03317C 148-174","Residues 101-188 are 34% similar to a (PROTEIN TRANSPORT BIOPOLYMER TRANSMEMBRANE INNER) protein domain (PD003317) which is seen in Q9ZDL8_RICPR.","","Thu Jun 14 12:55:16 MDT 2001","","Thu Jun 14 12:55:16 MDT 2001","Thu Jun 14 12:55:16 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:55:16 MDT 2001","Thu Jun 14 12:55:16 MDT 2001","","","Mon Jan 8 14:46:47 2001","Wed Jun 20 08:11:45 MDT 2001","Thu Jan 4 16:46:46 2001","Wed Jun 20 08:05:25 MDT 2001","Wed Jun 20 08:05:25 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 7-196 are 29% similar to PG0703.","Wed Jun 20 08:06:17 MDT 2001","Thu Jun 14 12:55:16 MDT 2001","-52% similar to PDB:2ICH Crystal structure of a putative AttH (NP_841447.1) from Nitrosomonas Europaea at 2.00 A resolution (E_value = );-42% similar to PDB:1F76 ESCHERICHIA COLI DIHYDROOROTATE DEHYDROGENASE (E_value = );-40% similar to PDB:1M2T Mistletoe Lectin I from Viscum album in Complex with Adenine Monophosphate. Crystal Structure at 1.9 A Resolution (E_value = );","","","Residues 55 to 192 (E-value = 1.5e-26) place PG0570 in the MotA_ExbB family which is described as MotA/TolQ/ExbB proton channel family (PF01618)","Wed Jun 20 08:05:25 MDT 2001","34540437","","","","","","1","","","PG0631" "PG0571","685018","685434","417","ATGAGTCTGAAACGTAAAACCAAGGTCACAGAAGTTTTTAGCATGGCTTCTATGACCGACGTGATTTTCCTGCTGCTCATCTTCTTCATGGTGACCAGTACGCTCATCGTACCCAATGCGCTACGCGTATCTCTTCCCTCTGCCAATAAACAGCCTGCCCCCGAAGCTCCTTTGGCACGGATCACCATTTCAGAAGATATGCGCTATTTCGCCGCTTTTGGTCAGGACAAAGGGCATGAGGTCGCTTTCGAGGAGATACTTCCCCTCTTGCTTCAGGAGCAAAGTCGCAATCCCGAAATGTACGTAGCCATATATGCCGACGAGAATGTCCCGTATCGTGAGATCGTGAAGGTGTTGAGTATGGCCGGGGAGAACAAGATGAAGGTGGTGTTGGCCACCAAAGCCCAAAGTAAAAAG","9.70","2.23","15611","MSLKRKTKVTEVFSMASMTDVIFLLLIFFMVTSTLIVPNALRVSLPSANKQPAPEAPLARITISEDMRYFAAFGQDKGHEVAFEEILPLLLQEQSRNPEMYVAIYADENVPYREIVKVLSMAGENKMKVVLATKAQSKK","685018 685434 [Shorter 755 225 99]","TIGR ID: PG0632","possible biopolymer transport protein","Inner membrane, Periplasm, Cytoplasm","Numerous significant hits in gapped BLAST to conserved hypothetical protein; e.g. residues 14-136 are 33% similar to gb|AAC45288.1| ExbD of Neisseria gonorrhoeae, residues 14-136 are 32% similar to gb|AAF42073.1| biopolymer transport protein ExbD of Neisseria meningitidis MC58, residues 1-124 are 26% similar to emb|CAB50919.1| hypothetical protein of Pseudomonas stutzeri.","
InterPro
IPR003400
Family
Biopolymer transport protein ExbD/TolR
PF02472\"[7-136]TExbD


","BeTs to 6 clades of COG0848COG name: Biopolymer transport protein ExbDFunctional Class: NThe phylogenetic pattern of COG0848 is -----Q-CE--HUJ----inxNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Apr 6 14:34:20 MDT 2001","Fri Jan 5 11:42:51 2001","Thu Jan 4 16:49:13 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Apr 6 14:33:04 MDT 2001","-44% similar to PDB:1ZQ1 Structure of GatDE tRNA-Dependent Amidotransferase from Pyrococcus abyssi (E_value = );-53% similar to PDB:1LFK Crystal structure of OxyB, a Cytochrome P450 Implicated in an Oxidative Phenol Coupling Reaction During Vancomycin Biosynthesis (E_value = );-53% similar to PDB:1LG9 Crystal structure of OxyB, a Cytochrome P450 Implicated in an Oxidative Phenol Coupling Reaction During Vancomycin Biosynthesis (E_value = );-53% similar to PDB:1LGF Crystal structure of OxyB, a Cytochrome P450 Implicated in an Oxidative Phenol Coupling Reaction During Vancomycin Biosynthesis (E_value = );-45% similar to PDB:1S3Q Crystal structures of a novel open pore ferritin from the hyperthermophilic Archaeon Archaeoglobus fulgidus (E_value = );","","","Residues 7 to 136 (E-value = 4.1e-09) place PG0571 in the ExbD family which is described as Biopolymer transport protein ExbD/TolR (PF02472)","Fri Apr 6 14:33:04 MDT 2001","34540438","","","","","","1","","","PG0632" "PG0573","685442","686266","825","ATGCAACAAGAGAAAGTCAAACGCAATGCCGTTGCCATAGCCGTATCGGTGGGGGCACATGTCGCACTGATCACCCTCTTGTTCGTGCTGCATCTTCGTGCTGCTCCGCGCGAAGAACCGGAAGAACTGATACTCGTCAATTTCGGAATCACGGAGCTTTCGTCCGGAGCTTTCGAGCCGGCACCACAGGAAACAGCATCCAATCCCGATGTACAAACGGAACAAACTCCAACGCAGAAACAGCCCGTAGTCAAAAAGCAGCAGGCACCGGCCGAATCTGATCTGCGTCAGGACGTAGAGCCGGCACCTCACTTGGCCAAAGCCGAAAAGGCCCGTCAAGAGGCTGAAATGAAACGCAAGCGTGAAGCCGAAGAGGCTCGCAAACGGGCAGAGGCTGCGGCAGAAGCCGAGCGCAAGCGCAAGGCCGAAGCAGGCAAGGCTATCAATAATAATGTGGCCGGAGCATTCGGACGAGGCGCCGAGCAAGGCAATACGCAAGGTTCGGGCACACAAGCCAATGGCAATCAGGGCAATCCCGGAGGTAGCGGTTCTTCGTACTCGCTTACCGGCCGTACTATCGTGGGCAATGGCGGCTATCCGGAAAAGCCTCGCTACAGCAAACCGATTCGAGGAACGGTACGAGTAAACATCGTAGTAAACAATGCCGGACGTGTGACCGATGCTTCCATCCGTCTGCGCGGTACCAATATCACGGATGCTGCCGCCCAGCGAGCAGCTATAGAAGCGGCCAAAACTACTCGCTTCAATGCCATAGCGGGTGGTGGAGATCAGGAGGGAGTAATCACCTATCATTTCGACATCAAG","10.30","6.98","29264","MQQEKVKRNAVAIAVSVGAHVALITLLFVLHLRAAPREEPEELILVNFGITELSSGAFEPAPQETASNPDVQTEQTPTQKQPVVKKQQAPAESDLRQDVEPAPHLAKAEKARQEAEMKRKREAEEARKRAEAAAEAERKRKAEAGKAINNNVAGAFGRGAEQGNTQGSGTQANGNQGNPGGSGSSYSLTGRTIVGNGGYPEKPRYSKPIRGTVRVNIVVNNAGRVTDASIRLRGTNITDAAAQRAAIEAAKTTRFNAIAGGGDQEGVITYHFDIK","685442 686266 [Shadowed by 757]","TIGR ID: PG0633","hypothetical protein","Inner membrane, Cytoplasm, Periplasm","No significant hits in gapped BLAST.","
InterPro
IPR006260
Domain
TonB, C-terminal
TIGR01352\"[197-275]TtonB_Cterm
noIPR
unintegrated
unintegrated
SSF74653\"[101-275]TSSF74653


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Jan 5 11:45:49 2001","Fri Jan 5 11:45:49 2001","Fri Jan 5 11:45:49 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540439","","","","","","1","","","PG0633" "PG0575","686284","686826","543","ATGAAAAAGACAGCATTAGTATTTCTGGCTCCCGGTTTCGAAGAGACCGAAGCCGTAGGCACGCTCGATATTCTTCGTCGGGGAGGTGTAGTCGCCGAATTTGTTTCCATTACGGATTCGCTCTATGTAGAGGGAGCCAACGGGATCACCGTCAAAGCCGATCGCCTGATGACTGATTTGCCGACAGTGGATGCTTTGGTTTTGCCGGGAGGACTCCCCGGAGCTGATAATCTGAACAGCTGTGAACCTCTTCGCCGTCTTCTAAGCGAGCATTATGCCGCCCAAAAGCTTGTGGCTGCTATCTGTGCTGCTCCTTTGGTATTCGGTGGTTTGGGTTTTGTCTGTGGCAGAAAAGCTACTTGCTATCCGGGCTTTGAATCCAAACTCGAAGGAGCCGATTATACGGGTGAAGCTGCCACACGTGACGGACATGTTATTACAGGCAAAGGCCCTGCCTGCGTCTTTGCATTTGCCATAGAAGTAGTTCGTTACCTCTGCGGTGATCAGGTAGCCGATGAGATCGCTACCGGTACACTCTTCAGA","4.80","-5.80","19000","MKKTALVFLAPGFEETEAVGTLDILRRGGVVAEFVSITDSLYVEGANGITVKADRLMTDLPTVDALVLPGGLPGADNLNSCEPLRRLLSEHYAAQKLVAAICAAPLVFGGLGFVCGRKATCYPGFESKLEGADYTGEAATRDGHVITGKGPACVFAFAIEVVRYLCGDQVADEIATGTLFR","686284 686826","TIGR ID: PG0634","conserved hypothetical protein (probable 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein)","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 3-181 and 6-179 are 36% and 34% similar (respectively) to fragments (residues 6-189 and 215-391) of gb|AAG41438.1|AF326856_1 unknown protein of Arabidopsis thaliana, residues 7-179 are 36% similar to gb|AAC66975.1| 4-methyl-5(b-hydroxyethyl)-thiazole monophosphatebiosynthesis protein (thiJ) of Borrelia burgdorferi, residues 1-179 are 35% similar to emb|CAB73157.1| 4-methyl-5(beta-hydroxyethyl)-thiazole monophosphate synthesis protein of Campylobacter jejuni.","
InterPro
IPR002818
Domain
ThiJ/PfpI
PF01965\"[31-166]TDJ-1_PfpI
InterPro
IPR006287
Family
DJ-1
TIGR01383\"[4-177]Tnot_thiJ
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.880\"[1-180]TG3DSA:3.40.50.880
PTHR11019\"[36-181]TPTHR11019
PTHR11019:SF4\"[36-181]TPTHR11019:SF4
SSF52317\"[1-181]TSSF52317


","BeTs to 10 clades of COG0693COG name: Putative intracellular protease/amidaseFunctional Class: RThe phylogenetic pattern of COG0693 is am-kYq-cEBr---gPol---Number of proteins in this genome belonging to this COG is 1","***** PF01965 (ThiJ/PfpI family) with a combined E-value of 9.2e-13. PF01965A 3-18 PF01965B 46-71 PF01965C 93-117","Residues 7-107 are 39% similar to a (PROTEIN I SYNTHASE PHOSPHORIBOSYLFORMYLGLYCINAMIDINE) protein domain (PD002258) which is seen in O51566_BORBU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Mar 9 09:51:40 MST 2001","Fri Mar 9 09:51:40 MST 2001","Fri Jan 5 11:51:46 2001","Fri Mar 9 09:51:40 MST 2001","Fri Mar 9 09:51:40 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Mar 9 09:51:40 MST 2001","-49% similar to PDB:1J42 Crystal Structure of Human DJ-1 (E_value = 2.7E_20);-51% similar to PDB:1P5F Crystal Structure of Human DJ-1 (E_value = 3.0E_19);-51% similar to PDB:1PDV Crystal structure of human DJ-1, P 31 2 1 space group (E_value = 3.0E_19);-51% similar to PDB:1PDW Crystal structure of human DJ-1, P 1 21 1 space group (E_value = 3.0E_19);-51% similar to PDB:1PS4 crystal structure of DJ-1 (E_value = 3.0E_19);","","","Residues 31 to 166 (E-value = 1.2e-24) place PG0575 in the DJ-1_PfpI family which is described as DJ-1/PfpI family (PF01965)","Fri Mar 9 09:51:40 MST 2001","34540440","","","","","","1","","","PG0634" "PG0576","687864","686932","933","GTGTGGACTGCCCTATCTCAACAGACGAATCAAACTACACAGCCAACTTCTACCCTCTTCGCAATGAAATACATCGCATACGCATTCGAACTCACACACCGTCCGGACGAACTGACTTTGGAGACGGCATACGACCTGCTTAGTGCCGAACTTGCCGAAATAGGATTCGAGAGTTTCGAGCAAAACGAGACTTGCCTTCGTGCTTATATCCCTGTCTCCACCGATATAGCATCCGACATTCCTGCGCTATTGGAGCAGTTTCCACTGCCGGGGCTTCTGTGGCAATACTCATCCGAGATCCAACCGGATATCAACTGGAACGAACAGTGGGAAAAGAACTTCTTCCGCCCCATTCGGATCGAAGACAAATGCCTTGTAAGAGCACCCTTCCATCCGACCGATCCGGATATACCGCTCGAGCTGATTATTTCTCCTCAAATGGCCTTTGGAACAGGACACCATGAGACCACTTCGCTGATGATGAGCTATCTTCTCGATATGGATTTGCGAGGCTTGAGAGTTCTGGACATGGGTTGCGGTACGGGAATCCTTGCCATCTTAGCTCGCAAATTGGGAGCCTCTTCTGTCACAGCTATCGACATAGACGACTGGTGCATACGCAACACGGGCGAGAATGCAGCTCTCAATGATATTCGGGATATTGATGTTCGCATAGGTGACGCATCTCTTCTTGCCGACTGTCCGATGTTCGATCTGATTATCGCAAACATCAACCGTAATATTCTGCTGGACGATATGTCTGCATACAGATCCCGACTCGGTAATGGCGGCACCCTGCTGTTAAGCGGTTTCTATACGGAGGATATACCGATCCTTACAGAATGTGCCGAAATACTAGGTCTGACTCTTTCGGAAACACGCTCACGTAACAACTGGGCTGCACTGCGGTTTACCCCCGACTCTCCTAAAAGA","4.30","-20.30","34884","VWTALSQQTNQTTQPTSTLFAMKYIAYAFELTHRPDELTLETAYDLLSAELAEIGFESFEQNETCLRAYIPVSTDIASDIPALLEQFPLPGLLWQYSSEIQPDINWNEQWEKNFFRPIRIEDKCLVRAPFHPTDPDIPLELIISPQMAFGTGHHETTSLMMSYLLDMDLRGLRVLDMGCGTGILAILARKLGASSVTAIDIDDWCIRNTGENAALNDIRDIDVRIGDASLLADCPMFDLIIANINRNILLDDMSAYRSRLGNGGTLLLSGFYTEDIPILTECAEILGLTLSETRSRNNWAALRFTPDSPKR","687801 686932 [Delay by 111 761 112 0]","TIGR ID: PG0635","ribosomal protein L11 methyltransferase","Cytoplasm","Numerous significant hits in gapped BLAST to ribosomal protein L11 methyltransferase protein; e.g. residues 50-302 are 28% similar to pir||T43740 probable ribosomal protein L11 methyltransferase of Listeria monocytogenes, residues 78-220 are 37% similar to gb|AAC76291.1| methylase for 50S ribosomal subunit protein L11 of Escherichia coli K12, residues 78-220 are 37% similar to gb|AAB28769.1| ribosomal protein L11 methyltransferase; PrmA of Escherichia coli.","
InterPro
IPR004498
Family
Ribosomal protein L11 methyltransferase
PIRSF000401\"[22-308]TRibosomal protein L11 methyltransferase
InterPro
IPR010456
Family
Ribosomal L11 methyltransferase
PF06325\"[1-305]TPrmA
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.150\"[149-243]Tno description
PTHR18895\"[155-307]TMETHYLTRANSFERASE
PTHR18895:SF3\"[155-307]TRIBOSOMAL PROTEIN L11 METHYLTRANSFERASE (L11 MTASE)


","BeTs to 6 clades of COG2264COG name: Ribosomal protein L11 methylaseFunctional Class: JThe phylogenetic pattern of COG2264 is am-kYq-cEBr---gPol---Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 78-192 are 33% similar to a (METHYLTRANSFERASE TRANSFERASE RIBOSOMAL PROTEIN L11) protein domain (PD009497) which is seen in PRMA_ECOLI.Residues 147-206 are 51% similar to a (OXIDOREDUCTASE ZINC DEHYDROGENASE ALCOHOL NAD PROTEIN) protein domain (PD000104) which is seen in O86951_THENE.","","Thu Jun 14 12:56:28 MDT 2001","","Thu Jun 14 12:56:28 MDT 2001","Thu Jun 14 12:56:28 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:56:28 MDT 2001","Thu Jun 14 12:56:28 MDT 2001","","","Fri Jan 5 11:55:10 2001","Wed Jun 20 08:03:09 MDT 2001","Fri Jan 5 11:55:10 2001","","Tue Jun 19 16:34:16 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Mar 9 15:43:55 MST 2001","-45% similar to PDB:1UFK Crystal structure of TT0836 (E_value = 7.7E_18);-45% similar to PDB:2NXC Apo-form of T. thermophilus ribosomal protein L11 methyltransferase (PrmA) (E_value = 7.7E_18);-45% similar to PDB:2NXE T. thermophilus ribosomal protein L11 methyltransferase (PrmA) in complex with S-Adenosyl-L-Methionine (E_value = 7.7E_18);-45% similar to PDB:2NXJ T.thermophilus ribosomal protein L11 methyltransferase (PrmA) in space group P 21 21 2 (E_value = 7.7E_18);-45% similar to PDB:2NXN T. thermophilus ribosomal protein L11 methyltransferase (PrmA) in complex with ribosomal protein L11 (E_value = 7.7E_18);","","","Residues 1 to 305 (E-value = 3.4e-15) place PG0576 in the PrmA family which is described as Ribosomal protein L11 methyltransferase (PrmA) (PF06325)","Tue Jun 19 16:34:16 MDT 2001","34540441","","","","","","1","","","PG0635" "PG0577","689162","687801","1362","ATGGGTAGTATCCGACTGCAAAACCTCACAGAAGGGGAAATAAAAGGACGTCTGCTCCGACTGGCTCTGCCCATCATGGGTACTTCCTTCGTGCAGATGGCCTATAGCTTTACCGATATGGCCTGGTTAGGCCGGTTGGGTAGCAAGTCCGTGGCAGCCGTAGGTATTGTGGCGGTACTGACGTGGCTCTCCAGTTCCATATCGTCAATCAATAAGACCGGCAGTGAGGTGACGATAGGCCACAGCCTCGGCAAGGGGGCCATCGAGGAAGCACGACGATACGCTTCGCACAACGTTTCGATGTCCCTACTGATCTCCTCCGTCAGCGCTCTTTTGTTTTTCCTTTTCCCACACCTTTTCCTCGGTATATACCATTTGGAGGACGATGTACACGCTTTGGCTCTTACCTACCTGCGCATAGTGGCATGCGGCCTGCCTTTCACCTTTGCAGCCACCGCATTCAGCGGTATCTACAACGGAGCCGGACTCAGCTCCATACCCTTCAAGGTCAGTAGCACGGGGTTGGTACTCAATATGATTCTGGATCCCTTGCTGATATTCGGTTTGGGATGGGGGACGATCGGAGCGGCCATAGCCACGCTGATCGCTCAGGTATTCGTATTCGTTCTATTCTTTTACAGGCTCAGACGGCAGGATAAGCTGTTGGATTGCTTCCCGTTCTTCGTCCGACCGGACAATATACATAGCGGTCGCATCTTGCGTATCGGCCTGCCTGTAGCTGCTCTCAACTCCCTCTTCGCCATCATCAATATGATGCTTGGCCGTCTGGCTTCGCAGCAAGGAGGACATATCGGAGTGGCAACGCTGACAACAGGCGGACAACTGGAAGCCATCACTTGGAACACTTCGCAAGGATTCAGTACGGCACTGGCTACTTTCGTGGCTCATAATTACGCTGCCCGTCAGGGCAAACGTATATTTTCTGCCTATCGTTATACCCTACTCTACTGCTCCATTTTCGGTATTCTGGGTACAGTGCTTTTCGTTTTCTTCGGTAATGAAGTCTTCCGACTCGTGGTACCGGAAAAAGAAGCCTATCTGTCGGGAGGTATTTATCTGCGCATCAGTGGCTATTCCCAGCTACTGATGATGCTGGAAATAGCCACTCAAGGCCTGTTCTACGGGACGGCACGGACAGTTTTCCCGGCCGTTATCAGTATCGGGGGGAACCTCCTGCGGATTCCGCTGGCTCTGCTGCTTATCGGTATGGGCTTCGGACCGGAATCCGTATGGTGGGCGATCAGCCTCTCATCCATGCTCAAAGGCTTGGCCATCGTGTGTGGACTGCCCTATCTCAACAGACGAATCAAACTACACAGCCAACTTCTACCCTCTTCGCAA","10.60","15.97","49294","MGSIRLQNLTEGEIKGRLLRLALPIMGTSFVQMAYSFTDMAWLGRLGSKSVAAVGIVAVLTWLSSSISSINKTGSEVTIGHSLGKGAIEEARRYASHNVSMSLLISSVSALLFFLFPHLFLGIYHLEDDVHALALTYLRIVACGLPFTFAATAFSGIYNGAGLSSIPFKVSSTGLVLNMILDPLLIFGLGWGTIGAAIATLIAQVFVFVLFFYRLRRQDKLLDCFPFFVRPDNIHSGRILRIGLPVAALNSLFAIINMMLGRLASQQGGHIGVATLTTGGQLEAITWNTSQGFSTALATFVAHNYAARQGKRIFSAYRYTLLYCSIFGILGTVLFVFFGNEVFRLVVPEKEAYLSGGIYLRISGYSQLLMMLEIATQGLFYGTARTVFPAVISIGGNLLRIPLALLLIGMGFGPESVWWAISLSSMLKGLAIVCGLPYLNRRIKLHSQLLPSSQ","689162 687801","Conflicting results from BLAST, COG, etc, check definition and paralogs.See PG1432.TIGR ID: PG0636","DNA damage-inducible protein","Inner membrane, Cytoplasm","Numerous significant hits in gapped BLAST to DNA damage-inducible protein; e.g. residues 7-347 are 24% similar to dbj|BAA29666.1| 449aa long hypothetical damage-inducible protein of Pyrococcus horikoshii, residues 7-347 are 24% similar to emb|CAB50320.1| DNA damage-inducible protein of Pyrococcus abyssi, residues7-394 are 23% similar to dbj|BAA29664.1| 472aa long hypothetical protein of Pyrococcus horikoshii.This sequence is similar to BT1193.","
InterPro
IPR002528
Family
Multi antimicrobial extrusion protein MatE
PTHR11206\"[38-444]TMatE
PF01554\"[24-184]T\"[245-406]TMatE
TIGR00797\"[24-418]TmatE
InterPro
IPR015522
Family
Na+ driven multidrug efflux pump
PTHR11206:SF6\"[38-444]TMATE_trans_like


","BeTs to 14 clades of COG0534COG name: Probable cation efflux pump (multidrug resistance protein)Functional Class: RThe phylogenetic pattern of COG0534 is amtKYqVCEBrhUJgpOl---Number of proteins in this genome belonging to this COG is 4","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Thu Dec 4 11:45:27 2003","Fri Jan 5 11:59:06 2001","Thu Dec 4 11:45:27 2003","Fri Jan 5 11:59:06 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 4-404 are 26% similar to PG1265, residues 239-434 are 17% similar to PG1265 and residues 4-404 are 26% simlar to PG0742. Residues 9-430 are 21% similar to PG1432, also a predicted F protein.","Fri Feb 9 09:42:07 MST 2001","Mon Apr 30 16:31:15 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 24 to 184 (E-value = 2.7e-35) place PG0577 in the MatE family which is described as MatE (PF01554)Residues 245 to 406 (E-value = 7.4e-13) place PG0577 in the MatE family which is described as MatE (PF01554)","Thu Dec 4 11:45:27 2003","34540442","","","","","","1","","","PG0636" "PG0578","690195","689158","1038","ATGAAACGTACCGAAATATCTTCTCTGGGTGAGTTCGGACTCATCCGGCACCTCACCGATTGTGTCCGACTGAAAAATCCCGGTACCCTCAAAGGCATAGGGGACGATGCTGCCGTCATCTCATTCGATGAAGGCATGAAAGCACTTGTCACTACCGATATGCTCCTCGAAGGAATCCACTTCGACCTCACTTATACCCCTCTCAAACATTTGGGATACAAAAGTGCGATAGTAAACTTCTCCGACATATATGCCATGAACGGCACACCACGGCAGCTGACGGTTTCCATAGGTGTATCGGCACGATTCTCGGTAGAGGATATCGAACAGATCTATCAGGGTATCCTCACGGCCTGCGATGCCTACGGCGTAGACCTCGTAGGAGGCGATACTTCGGCGTCGCTCACCGGATTGTGTCTGAGCCTGACCTGCATCGGGGAGGCACGAGAAGAGGAAATAGTGTATCGCAGTGGAGCCAAACCGACCGATCTGATCTGCGTGAGCGGAGACCTCGGCGCAGCCTATATGGGACTCCAGCTACTGGAGCGTGAGAAAGCGGTCTATCAGGGAGAAAAAGACTTTGCACCGGATTTCGCCGGTCATGAGTACATACTCGAAAGACAGCTGAAACCCGAAGCGCGCAAAGACATTGTGGAGGAGTTGCGCTCGGCCGGCATCAAACCGACTGCCATGATGGACATTTCGGACGGGCTATCGTCCGAACTCCTCCATATAGCGCATGCCGGAAAGGTCGGCGTCCGTATATATGACGACAAATTGCCTATCGACTACCAGACGGCAGCCATGGCGGAAGAGTTCAATATGAATCTCTCCACAGCCGCTCTGAACGGGGGTGAAGACTACGAATTGTTGTTTACCGTACCTCTCACCCGTCTCGATGATATTCAGCGAATAGAGGGCATCCACCTGATCGGCCATATTACAGAAGAGGCCGACGGTCACCTCCTCGTGGCACGAGACGGAACGGAGATTACCTTGGTAGCGCAAGGATGGAATGCAGCAAAGGCTCTGAATGGG","4.50","-21.04","37574","MKRTEISSLGEFGLIRHLTDCVRLKNPGTLKGIGDDAAVISFDEGMKALVTTDMLLEGIHFDLTYTPLKHLGYKSAIVNFSDIYAMNGTPRQLTVSIGVSARFSVEDIEQIYQGILTACDAYGVDLVGGDTSASLTGLCLSLTCIGEAREEEIVYRSGAKPTDLICVSGDLGAAYMGLQLLEREKAVYQGEKDFAPDFAGHEYILERQLKPEARKDIVEELRSAGIKPTAMMDISDGLSSELLHIAHAGKVGVRIYDDKLPIDYQTAAMAEEFNMNLSTAALNGGEDYELLFTVPLTRLDDIQRIEGIHLIGHITEEADGHLLVARDGTEITLVAQGWNAAKALNG","690195 689158","TIGR ID: PG0637","thiamin monophosphate kinase","Cytoplasm","Numerous significant hits in gapped BLAST to thiamin monophosphate kinase protein; e.g. residues 9-342 are 33% similar to dbj|BAA19714.1| H. influenzae hypothetical protein; E64115 of Bacillus subtilis, residues 9-342 are 33% similar to sp|O05514|THIL_BACSU thiamine-monophosphate kinase (thiamine-phosphate kinase) of Bacillus subtilis,residues 6-338 are 34% similar to gb|AAB85873.1| thiamine monphosphate kinase of Methanothermobacter thermoautotrophicus.This sequence is similar to BT1882.","
InterPro
IPR006283
Family
Thiamine-monophosphate kinase
PIRSF005303\"[9-342]TThiam_monoph_kin
TIGR01379\"[10-341]TthiL
InterPro
IPR010918
Domain
AIR synthase related protein, C-terminal
PF02769\"[160-325]TAIRS_C
noIPR
unintegrated
unintegrated
G3DSA:3.30.1330.10\"[4-152]TG3DSA:3.30.1330.10
G3DSA:3.90.650.10\"[155-341]TG3DSA:3.90.650.10
SSF55326\"[11-154]TSSF55326
SSF56042\"[157-331]TSSF56042


","BeTs to 9 clades of COG0611COG name: Thiamine monophosphate kinaseFunctional Class: HThe phylogenetic pattern of COG0611 is amtk-q-cebrh---------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 9-129 are 35% similar to a (PROTEIN LIGASE SYNTHETASE) protein domain (PD000644) which is seen in THIL_BACSU.Residues 138-338 are 33% similar to a (PROTEIN HYDROGENASE EXPRESSION/FORMATION) protein domain (PD002206) which is seen in THIL_METTH.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Jan 5 12:07:50 2001","Tue Dec 9 16:21:17 2003","Fri Jan 5 12:07:50 2001","","Mon Apr 30 16:45:33 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Apr 30 16:45:33 MDT 2001","-52% similar to PDB:1VQV Crystal Structure of Thiamine Monophosphate Kinase (thil) from Aquifex Aeolicus (E_value = 9.1E_39);","","","Residues 1 to 149 (E-value = 2.1e-05) place PG0578 in the AIRS family which is described as AIR synthase related protein, N-terminal domain (PF00586)","Mon Apr 30 16:45:33 MDT 2001","34540443","","","","","","1","","","PG0637" "PG0579","691274","690204","1071","ATGGATGCGCCCCGTATCAACAAGTGGCTCAAACCGCTTTCCGCCCTCTACGGGGTGGGCGTGAGGTTGCGCAACTACCTCTTCGACAAGAACGTCCTGATTTCGAACTCTTTCGACATCCCTATCGTCTGTGTAGGCAATATCACCATCGGCGGCACCGGTAAGACACCCCACGTAGAATACCTGATTCGGCTCCTGCATCCACGCTATCGTGTAGCAGTGGTTAGCCGCGGCTATAAGCGGAAAACCAAAGGGATGATCGTTGCAACCGAAGGATCGACTGCATGGGATATAGGAGACGAACCTCGTCAGATCAAACGAAAATATCCGGACCTGACCGTCATCGTGGATGCTGACCGGAGCAGAGCCATCGGCTATCTATGCGATCTGGCAGAAGAGCAAAGGCCACAGCTCATCGTTCTGGACGATGGCTTCCAACACCGTAAGGTGAAAGCAGACCTGAACATAGTACTCACAGACTACAACCGTATTCTGACCAAAGACTATCTGCTTCCGGCCGGTCGTCTGAGAGAACCTGCCGGCTCTATACAGCGTGCCGATATGGTAATCCTGACCAAATGCCCCGATGATCTTGCTCCCATAGATCTTAGAGCAGCCAAACGCGACTTGGCCTTATACCCGCATCAGAAGCTGTTCTTCTCCAAATTTCTGTACGGACAGGGACTGAAGCCTTTGTTTTCCGATCAGTCTCCTTCGGCAGAAGTACGCTCTGCGCTGGCTATCGCCGGAATAGCAAGTCCGAAACTGTTCTTCCGAGAAATACGCACCCGATTCCCCTCCGGAACGGATCGCATCTATCCGGATCATCATGAGTTTACCGACAGAGAGATCTGTTTGCTCATCCAAGATTGGCACGAACTGCATCGGAAAGATGCCAATGCCATAGTGGTATGTACCGAGAAAGATGCCATGCGACTGGCCCTACGACAATCTTCTTTTCCGCAAGAGATGCAGGAAAGATTTTATTACCTGCCGGTGGAAGTAAAACTGATGTTCGATCAGGAAAAAGTATTTGTCGATAGGCTATTGGGAGTCATCCAACACAAAAAA","10.00","12.94","40966","MDAPRINKWLKPLSALYGVGVRLRNYLFDKNVLISNSFDIPIVCVGNITIGGTGKTPHVEYLIRLLHPRYRVAVVSRGYKRKTKGMIVATEGSTAWDIGDEPRQIKRKYPDLTVIVDADRSRAIGYLCDLAEEQRPQLIVLDDGFQHRKVKADLNIVLTDYNRILTKDYLLPAGRLREPAGSIQRADMVILTKCPDDLAPIDLRAAKRDLALYPHQKLFFSKFLYGQGLKPLFSDQSPSAEVRSALAIAGIASPKLFFREIRTRFPSGTDRIYPDHHEFTDREICLLIQDWHELHRKDANAIVVCTEKDAMRLALRQSSFPQEMQERFYYLPVEVKLMFDQEKVFVDRLLGVIQHKK","691274 690204","TIGR ID: PG0638From InterPro: IPR003758Tetraacyldisaccharide-1-P 4'-kinase.Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).","tetraacyldisaccharide 4'-kinase","Cytoplasm","This sequence corresponds to gi:34396757 in Genbank.Its nearest neighbor in the NR database is gi:53714737 from Bacteroides fragilis YCH46.","
InterPro
IPR003758
Family
Tetraacyldisaccharide-1-P 4'-kinase
PF02606\"[5-192]TLpxK
TIGR00682\"[13-355]TlpxK
noIPR
unintegrated
unintegrated
SSF52540\"[39-181]TSSF52540


","BeTs to 5 clades of COG1663COG name: Lipid A biosynthesis protein LpxK, tetraacyldisaccharide-1-P 4'-kinaseFunctional Class: NThe phylogenetic pattern of COG1663 is -----q--e--huj----inxNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 10-192 are 43% similar to a (PROTEIN 4'-KINASE KINASE) protein domain (PD014061) which is seen in O67572_AQUAE.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Wed Mar 16 14:51:53 2005","Wed Mar 16 14:51:53 2005","Wed Mar 16 10:55:53 2005","Wed Mar 16 14:51:53 2005","","Wed Mar 16 14:51:53 2005","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Apr 13 16:32:40 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 5 to 355 (E-value = 3.5e-37) place PG0579 in the LpxK family which is described as Tetraacyldisaccharide-1-P 4'-kinase (PF02606)","Wed Mar 16 14:51:53 2005","34540444","","","Hashimoto M, Asai Y, Tamai R, Jinno T, Umatani K, Ogawa T.Chemical structure and immunobiological activity of lipid A from Prevotella intermedia ATCC 25611 lipopolysaccharide.FEBS Lett. 2003 May;543(1-3):98-102.PMID: 12753913Garrett TA, Que NL, Raetz CR.Accumulation of a lipid A precursor lacking the 4'-phosphate following inactivation of the Escherichia coli lpxK gene.J Biol Chem. 1998 May;273(20):12457-65.PMID: 9575203Garrett TA, Kadrmas JL, Raetz CR.Identification of the gene encoding the Escherichia coli lipid A 4'-kinase. Facile phosphorylation of endotoxin analogs with recombinant LpxK.J Biol Chem. 1997 Aug;272(35):21855-64.PMID: 9268317Reddi K, Poole S, Nair S, Meghji S, Henderson B, Wilson M.Lipid A-associated proteins from periodontopathogenic bacteria induce interleukin-6 production by human gingival fibroblasts and monocytes.FEMS Immunol Med Microbiol. 1995 Apr;11(2):137-44.PMID: 7640674","","Wed Mar 16 14:51:53 2005","1","","","PG0638" "PG0580","693091","691307","1785","ATGAAAGAATTTTTCAAAATGTTTTTCGCCTCGATCCTCGGGGTTATAACGGCAGGAATCATCTTGTTCTGTATCTTTCTATTTATCTTTTTCGGCATCGTAGCCGGTATTGCCTCCAAGGCAACGGGAGGAACCATTCCGAAGATCGAAGCAAACTCCATCCTACATATAGACAATTCTTCTTTCCCTGAGATCGTATCGGCCAATCCCTGGAGCATGCTCACAGGCAAAGACGAGTCCGTATCGCTCTCACAGGCAGTCGAAGCCATCGGCCAAGCCAAAAATAATCCCAACATAACCGGTATCTTCCTCGATCTGGACAACCTTTCCGTCGGTATGGCATCGGCAGAGGAATTGCGTCGCGCGTTGCAGGATTTCAAGATGTCGGGCAAGTTCGTCGTATCCTATGCCGACAGATACACCCAAAAGGGTTACTACCTCTCCAGTATTGCAGACAAACTCTACCTCAATCCGAAAGGAATGTTGGGGCTTATCGGGATTGCGACCCAAACAATGTTCTACAAAGATGCCCTCGACAAATTCGGCGTGAAGATGGAGATCTTCAAGGTAGGCACCTACAAGGCAGCCGTAGAGCCATTCATGCTCAACAGGATGAGCGATGCCAATCGCGAACAAATCACCACATACATAAACGGGCTTTGGGACAAGATCACATCCGATATTGCAGAGTCGCGCAAGACGGCAATGGATTCCGTGAAAATGTTTGCCGACAAAGGCGAAATGTTCGGTCTTGCCGAGAAAGCGGTGGAGATGAAGCTCGTGGATGAGCTGGCTTACCGTACCGATGTGGAGAAAGAACTCAAAAAGATGTCCCAACGCGGAGAGAAAGATGAACTTCGGTTCGTATCGCTTTCTCAGGTTCTGGCCAATGGCCCGATGAACAAAACGAAAGGCAGTCGGATCGCCGTTCTCTTTGCCGAAGGTGAAATAACGGAAGAAATAATAAAGAAGCCGTTCGACACTGACGGTAGCTCCATCACACAAGAACTCGCCAAAGAAATCAAGGCAGCAGCCGATGACGATGATATCAAAGCCGTAGTACTTCGTGTCAATTCTCCGGGAGGTAGTGCTTTCACTTCCGAACAGATATGGAAGCAGGTAGCCGATCTCAAGGCCAAAAAGCCTATCGTGGTCTCCATGGGCGACGTAGCAGCCTCGGGCGGATACTACATAGCCTGCGCAGCCAACAGTATCGTGGCAGAGCATACGACTCTGACCGGCTCCATCGGCATATTCGGCATGTTCCCGAACTTCGCGGGCGTAGCCAAGAAGATAGGAGTGAATATGGACGTCGTACAGACATCCAAGTATGCAGACTTGGGCAACACCTTCGCTCCGATGACGGTCGAAGATCGTGCCCTCATCCAACGCTACATAGAGCAGGGCTACGACCTCTTCCTCACTCGCGTATCGGAAGGCCGCAACCGCACCAAGGCACAGATCGACAGCATCGCTCAAGGCCGTGTATGGCTCGGCGACAAAGCTCTTGCACTCGGTTTGGTGGATGAGCTTGGAGGTTTGGACACAGCTATCAAACGGGCCGCGAAGCTGGCTCAGCTCGGTGGCAACTACAGCATAGAGTATGGCAAGACCAAGCGCAACTTCTTCGAAGAGTTGCTCTCCTCATCAGCAGCGGATATGAAGTCTGCCATCCTGAGTACCATTCTCTCCGATCCGGAAATAGAAGTTCTGCGCGAACTCCGCTCCATGCCGCCCCGTCCTTCGGGCATACAGGCACGTCTCCCCTATTACTTCATGCCGTAC","6.20","-1.56","65245","MKEFFKMFFASILGVITAGIILFCIFLFIFFGIVAGIASKATGGTIPKIEANSILHIDNSSFPEIVSANPWSMLTGKDESVSLSQAVEAIGQAKNNPNITGIFLDLDNLSVGMASAEELRRALQDFKMSGKFVVSYADRYTQKGYYLSSIADKLYLNPKGMLGLIGIATQTMFYKDALDKFGVKMEIFKVGTYKAAVEPFMLNRMSDANREQITTYINGLWDKITSDIAESRKTAMDSVKMFADKGEMFGLAEKAVEMKLVDELAYRTDVEKELKKMSQRGEKDELRFVSLSQVLANGPMNKTKGSRIAVLFAEGEITEEIIKKPFDTDGSSITQELAKEIKAAADDDDIKAVVLRVNSPGGSAFTSEQIWKQVADLKAKKPIVVSMGDVAASGGYYIACAANSIVAEHTTLTGSIGIFGMFPNFAGVAKKIGVNMDVVQTSKYADLGNTFAPMTVEDRALIQRYIEQGYDLFLTRVSEGRNRTKAQIDSIAQGRVWLGDKALALGLVDELGGLDTAIKRAAKLAQLGGNYSIEYGKTKRNFFEELLSSSAADMKSAILSTILSDPEIEVLRELRSMPPRPSGIQARLPYYFMPY","protein protease IV/endopeptidase","TIGR ID: PG0639","protein protease IV/endopeptidase","Inner membrane, Periplasm, Cytoplasm","Numerous significant hits in gapped BLAST to protein; e.g.residues 1-590 are 32% similar to dbj|BAA17735.1| protease IV of Synechocystis sp., residues 82-558 are 38% similar to gb|AAC74836.1| protease IV, a signal peptide peptidase of Escherichia coli K12, residues 81-585 are 34% similar to gb|AAC23191.1| protease IV of Haemophilus influenzae Rd.This sequence is similar to BT1879.","
InterPro
IPR002142
Domain
Peptidase S49
PD002897\"[144-200]T\"[377-464]TPeptidase_S49
PF01343\"[125-281]T\"[375-528]TPeptidase_S49
InterPro
IPR004634
Family
Peptidase S49, protease IV
PIRSF001217\"[1-595]TProtease_4_SppA
TIGR00705\"[7-586]TSppA_67K
InterPro
IPR004635
Domain
Peptidase S49, SppA
TIGR00706\"[307-526]TSppA_dom
noIPR
unintegrated
unintegrated
SSF52096\"[39-269]T\"[293-516]TSSF52096


","BeTs to 12 clades of COG0616COG name: Periplasmic serine proteasesFunctional Class: NThe phylogenetic pattern of COG0616 is aMtK-QvCEBrHuj---linXNumber of proteins in this genome belonging to this COG is 1","***** PF01343 (Peptidase family U7) with a combined E-value of 4.4e-48. PF01343A 349-362 PF01343B 390-418 PF01343C 462-481 PF01343D 492-518 PF01343B 139-167","Residues 74-256 are 29% similar to a (PROTEASE IV SPPA PROTEASE) protein domain (PD172671) which is seen in O83962_TREPA.Residues 377-534 are 33% similar to a (PROTEASE IV HYDROLASE PROTEIN ENDOPEPTIDASE) protein domain (PD002897) which is seen in SPPA_SYNY3.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","Wed Mar 22 10:51:57 MST 2000","","Wed Mar 22 10:51:57 MST 2000","Mon Dec 8 16:42:30 2003","Fri Jan 5 16:15:31 2001","Wed May 23 17:51:11 MDT 2001","Wed May 23 17:51:11 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed May 23 17:51:11 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 125 to 281 (E-value = 7.4e-34) place PG0580 in the Peptidase_S49 family which is described as Peptidase family S49 (PF01343)Residues 375 to 528 (E-value = 3.8e-72) place PG0580 in the Peptidase_S49 family which is described as Peptidase family S49 (PF01343)","Mon Dec 8 16:42:30 2003","34540445","","","","","","1","","","PG0639" "PG0581","696005","694836","1170","ATGCCGATCCCACCGGTTTCATCAACTACAAAAGCGACTACTACACCTATGGTGCCCTACTCCAGGACAAGATTTCCTTTGGAGGACAAAAATATCGTACTCGGTGTCGACAGCCGAAACATGACGATGGAGTCAGAAAGATTCGAGCAGGCAGGAGTGAATACAAAGCCATACAACCCCGGATATGCCACGAACAATATCGGTTTGTTCGGACAGGCCAATTTCTACCTGCTGAACGATGCTCTATCGATATCTGCCGGTGCACGTGCCGACTTCATGTTCTTTGACCTGAAAGCGAACGAGTATCTCAACAATGAAGCCAAACAGGAAACTCATAACGTAATCAATCCGAATGTCGGAATCAAATATGAGTTTGTGAAAGGCCTTACAGCTCATGGTACATTCGGTAGTGCATTCAGTGCTCCCGATGCTTTCCAAAAAGCAGGCCAATACGTAGGCCCGTTCGGCACGACCATAGGCAATCCTGACCTGAAACCCGAAAAGTCCATGACCTGGGACTTCGGTATCGGATACAGCAATGCACGCTGCGGGATCCAAGCCGACGTAACCTTAACCTATTTCCACACCGACCACAAAGATCTGATCTTGTCCAGCCCTGACTATGCTAATAATATCACCACATACATCAATGCCGACAAGGCTCGTATGAGCGGTATCGAGGCCCTTTTGTCTTATGACTTCGGCAGCCTCTTTGCCAACAAGTTCTCTCTCCGCGCATTTGCGAATGCCACGATCATGCTCAATTCCGAGATGAAGAAAAGCCAGACCGATGCCCCTTGGAGCGAAATGTACTACGTTCGCAAGCAGAACATCACCTTCGGTATCGAATATCGTGGCAAAGAAGGACTTGAAGTGATGCTCAACGGTCGCTTCATGGGACGCAGGATCGAGCAAAACTGGTATGCTTACTACCCCGAAGTTCGCCCCGAACTCCAGCAACTGCTTGCAGCAGAAGAGCCTGAATTGGCTGCTCAGGGACTGCTCCGTCATCCGCAAGCAATGGTGTTCAATGCCTCTGCTTACTACCACATGAACAAGTATCTCACCTTCGGTGTGAACTTGAACAACATCTTGGATGAGCTTTATACGGAGAAAGACGGCTACCACATGCCCGGACGTAACATCATGGGTAAGGTTATGGTCAACTTC","6.40","-2.34","43902","MPIPPVSSTTKATTTPMVPYSRTRFPLEDKNIVLGVDSRNMTMESERFEQAGVNTKPYNPGYATNNIGLFGQANFYLLNDALSISAGARADFMFFDLKANEYLNNEAKQETHNVINPNVGIKYEFVKGLTAHGTFGSAFSAPDAFQKAGQYVGPFGTTIGNPDLKPEKSMTWDFGIGYSNARCGIQADVTLTYFHTDHKDLILSSPDYANNITTYINADKARMSGIEALLSYDFGSLFANKFSLRAFANATIMLNSEMKKSQTDAPWSEMYYVRKQNITFGIEYRGKEGLEVMLNGRFMGRRIEQNWYAYYPEVRPELQQLLAAEEPELAAQGLLRHPQAMVFNASAYYHMNKYLTFGVNLNNILDELYTEKDGYHMPGRNIMGKVMVNF","696005 694836 [Shorter 769 284 99]","Veith et al. 2002 identified this protein by two-dimensional gel electrophoresis and peptide mass fingerprinting of outer membranes prepared from strain W50.PG0581 should be combined with PG0582.TIGR ID: PG0644","tonB receptor tlr (C-terminal part)","Outer membrane, Extracellular","PG081 is essentially identical to a previously sequencedP.gingivalis protein in GenBank, AAD37808. This sequence corresponds to the C-terminal portion of the previously sequenced strain W50 AF155223, a predicted ton-B receptor t1r.","
InterPro
IPR000531
Domain
TonB-dependent receptor
PF00593\"[116-390]TTonB_dep_Rec
noIPR
unintegrated
unintegrated
G3DSA:2.40.170.20\"[26-390]Tno description


","BeTs to 3 clades of COG1629COG name: Outer membrane receptor proteins, mostly Fe transportFunctional Class: PThe phylogenetic pattern of COG1629 is -----q-CE--HUJ-------Number of proteins in this genome belonging to this COG is 8","No significant hit to the Blocks database.","Residues 95-237 are 30% similar to a (PROTEIN RECEPTOR OUTER MEMBRANE PRECURSOR SIGNAL TONB) protein domain (PD000484) which is seen in BTUB_SALTY.","","","","","","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","","","","Thu Feb 7 15:39:42 2002","Mon Apr 30 17:26:20 MDT 2001","Thu Feb 7 17:03:26 2002","Thu Feb 7 15:39:42 2002","","Thu Feb 7 15:39:42 2002","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Apr 30 16:57:57 MDT 2001","-43% similar to PDB:1NQF OUTER MEMBRANE COBALAMIN TRANSPORTER (BTUB) FROM E. COLI, METHIONINE SUBSTIUTION CONSTRUCT FOR SE-MET SAD PHASING (E_value = 7.9E_10);","","","No significant hits to the Pfam 11.0 database","Thu Feb 7 15:39:42 2002","0","Thu Feb 7 17:03:26 2002","Veith,P., Talbo,G., Slakeski,N., Dashper,S., Moore,C.,Paolini,R., Reynolds,E., Major outer membrane proteins and proteolytic processing of RgpA, and Kgp of Porphyromonas gingivalis W50, Biochem J. 2002 (in press).Slakeski N, Dashper SG, Cook P, Poon C, Moore C, Reynolds EC.A Porphyromonas gingivalis genetic locus encoding a heme transport system.Oral Microbiol Immunol. 2000 Dec;15(6):388-92.PMID: 11154437 Aduse-Opoku,J., Slaney,J.M., Rangarajan,M., Muir,J., Young,K.A. and Curtis,M.A., \"The Tla protein of Porphyromonas gingivalis W50: a homolog of the RI protease precursor (PrpRI) is an outer membrane receptor required for growth on low levels of hemin\", J. Bacteriol. 179 (15), 4778-4788 (1997). M: 97386416.","","Thu Feb 7 17:03:26 2002","","1","","","PG0644" "PG0582","697077","695722","1356","TTGTATGCGGACAAGATGCGCCGGCATATCGTCAAGTGCTGTCCCTCTGCCTCCATACTCTTGCAAGAATACTCCACAACAGAATTATTCATTCATCACTTTAACATATCAATAATTATGAAAAAGTTTTTCTTCGCGCTACTATCGATTGGTATTTCAGCGCAGGCTTTTGCCAAGACGGACAACGTCCCGACAGATTCGCTACGAGTACACAATCTTCAGACCGTCACGGTCTATTCTACACGCACGGCCGTACCTCTGAAAAAGATACCGGCCAAGATGGAACTCATCTCATCGCGCAACATCAAGCAGTCCGGCTTTAACAACATGACCGACATCCTCAAGACGCAAAGTTCGCTCGATGTCATACAATACCCGGGCTTTAGTTCGAACATCGGTATCCGCGGTTTCAAGCCCTCCGGCAAGTATGTAACCGTATTGGTAAACGGCATCCCTGCGGGAACGGACAATATCTCTACGCTCAACACGAGCAACATCGAACAAATCGAGATCCTCAAAGGCCCGTTCTCTTCCATCTACGGCACCAATGCCATGGGCGGTGTGGTGAACATCATCACCCACAAATCCAAGGACAAGATCCATGGCAACGTTTCTCTCTTCGGCGGTAGCTACCAGACCATGGCCGGATCATTCAACTTGGGTGGCCGCTTCGAGGATATTTTCTCATTCGATCTTAGTCTGGGCTTGGACAAGCAGAACAAGGACTATAAGACCGGATCAAACAATTTCCTATCCCTGAGCAAACTGGAAGAAGCTATAGTAGATGTAAATGCTACCAAAAACAAGAAAATGAAGGGGAGCGACTATACTGTAGCAACGGGACGTCTGCGTTTCGGTATCGACTTCACGCCCGAATGGTCGCTGAATCTGTATCAAAACGTATTCCTCGGAGATGCGATCCCCGTAGGAGGATCTATATGGGGCGTTTACGGAGAATCCAAAAAAAATCTGAATCGTTCTTCGACCTCTTTCGAGCTGCTCGGCAAACATGGCTGCCACACGCTTCAATTCTCCCCCTACTTCAACATAGAGAAATCGGAGAACTATAACAATGCCGATCCCACCGGTTTCATCAACTACAAAAGCGACTACTACACCTATGGTGCCCTACTCCAGGACAAGATTTCCTTTGGAGGACAAAAATATCGTACTCGGTGTCGACAGCCGAAACATGACGATGGAGTCAGAAAGATTCGAGCAGGCAGGAGTGAATACAAAGCCATACAACCCCGGATATGCCACGAACAATATCGGTTTGTTCGGACAGGCCAATTTCTACCTGCTGAACGATGCTCTATCGATATCTGCCGGTGCACGTGCCGACTTCATGTTCTT","10.10","21.22","50608","LYADKMRRHIVKCCPSASILLQEYSTTELFIHHFNISIIMKKFFFALLSIGISAQAFAKTDNVPTDSLRVHNLQTVTVYSTRTAVPLKKIPAKMELISSRNIKQSGFNNMTDILKTQSSLDVIQYPGFSSNIGIRGFKPSGKYVTVLVNGIPAGTDNISTLNTSNIEQIEILKGPFSSIYGTNAMGGVVNIITHKSKDKIHGNVSLFGGSYQTMAGSFNLGGRFEDIFSFDLSLGLDKQNKDYKTGSNNFLSLSKLEEAIVDVNATKNKKMKGSDYTVATGRLRFGIDFTPEWSLNLYQNVFLGDAIPVGGSIWGVYGESKKNLNRSSTSFELLGKHGCHTLQFSPYFNIEKSENYNNADPTGFINYKSDYYTYGALLQDKISFGGQKYRTRCRQPKHDDGVRKIRAGRSEYKAIQPRICHEQYRFVRTGQFLPAERCSIDICRCTCRLHVL","697077 695722 [Bad Olap 768 284 0]","See PG0581: T1a is thought to be greater than 1000 amino acids.T1a is virtually identical to the C-terminal half of PrtP (PG1605). See also PG1768, PG1602 and PG0461.NO TIGR ID corresponds to this gene.","tonB-linked receptor Tlr","Outer membrane, Cytoplasm","This sequence corresponds in part (see PG0581) to the previously sequenced AF155223 in GenBANK, a predicted ton-B receptor T1r.","
InterPro
IPR012910
Domain
TonB-dependent receptor, plug
PF07715\"[86-188]TPlug
noIPR
unintegrated
unintegrated
G3DSA:2.170.130.10\"[66-193]Tno description
G3DSA:2.40.170.20\"[195-385]Tno description
tmhmm\"[43-58]?transmembrane_regions


","BeTs to 4 clades of COG1629COG name: Outer membrane receptor proteins, mostly Fe transportFunctional Class: PThe phylogenetic pattern of COG1629 is -----q-CE--HUJ-------Number of proteins in this genome belonging to this COG is 8","No significant hit to the Blocks database.","Residues 130-198 are identical to a (RECEPTOR PROTEIN OUTER MEMBRANE PRECURSOR SIGNAL TONB) protein domain (PD000492) which is seen in P72196_PORGI.Residues 199-311 are identical to a (TONB-LINKED ADHESIN PRECURSOR SIGNAL) protein domain (PD125299) which is seen in P72196_PORGI.Residues 6-129 are 99% similar to a (TONB-LINKED ADHESIN PRECURSOR SIGNAL) protein domain (PD078199) which is seen in P72196_PORGI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Tue Dec 12 09:51:25 MST 2000","Mon Apr 30 17:01:07 MDT 2001","Thu Dec 7 13:14:00 MST 2000","Thu Jan 11 16:59:45 2001","","Mon Apr 30 17:00:16 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 37-205 are 31% similar to PG1358, residues 68-205 are 28% similar to PG0601, residues 72-389 are 20% similar to PG0637.","Thu Jan 11 16:59:45 2001","Mon Apr 30 17:00:16 MDT 2001","-55% similar to PDB:1NQE OUTER MEMBRANE COBALAMIN TRANSPORTER (BTUB) FROM E. COLI (E_value = 1.9E_10);-55% similar to PDB:1NQF OUTER MEMBRANE COBALAMIN TRANSPORTER (BTUB) FROM E. COLI, METHIONINE SUBSTIUTION CONSTRUCT FOR SE-MET SAD PHASING (E_value = 1.9E_10);-55% similar to PDB:1NQG OUTER MEMBRANE COBALAMIN TRANSPORTER (BTUB) FROM E. COLI, WITH BOUND CALCIUM (E_value = 1.9E_10);-55% similar to PDB:1NQH OUTER MEMBRANE COBALAMIN TRANSPORTER (BTUB) FROM E. COLI, WITH BOUND CALCIUM AND CYANOCOBALAMIN (VITAMIN B12) SUBSTRATE (E_value = 1.9E_10);-55% similar to PDB:1UJW Structure of the complex between BtuB and Colicin E3 Receptor binding domain (E_value = 1.9E_10);","","","No significant hits to the Pfam 11.0 database","Mon Apr 30 17:00:16 MDT 2001","","","Slakeski N, Dashper SG, Cook P, Poon C, Moore C, Reynolds EC.A Porphyromonas gingivalis genetic locus encoding a heme transport system.Oral Microbiol Immunol. 2000 Dec;15(6):388-92.PMID: 11154437 Aduse-Opoku,J., Slaney,J.M., Rangarajan,M., Muir,J., Young,K.A. and Curtis,M.A., \"The Tla protein of Porphyromonas gingivalis W50: a homolog of the RI protease precursor (PrpRI) is an outer membrane receptor required for growth on low levels of hemin\", J. Bacteriol. 179 (15), 4778-4788 (1997). M: 97386416.","","Sat Jun 2 15:20:54 MDT 2001","","1","","","" "PG0583","698050","696977","1074","ATGATCGTTCGCTTCGCAGGACGCAGAGGAGTCGTGAGCACCTGCAATCTCAACGGCGGCTACCGAGAAGACCTCCGCTACGCCTTCAACAACAGTTGCGGGAGGGACCCCGACGTAATAGCCAAACGCTCTGTAGGGATGCGAGGAAAGACCATGATCGAACACTACGCCGCCTTAGCGGAAGAATTGGGTCTGCCTCTTGACAAAACAACGGGCATGGGTACCGCTGCTCTGATCGAAAATACGGCGACCTCCTCTCGCCAATACCACGGAGTAACGGTCATGGCGGTTGCCACGGCAGGTATAGATGTAAATGGGGGACGCGCAGGAGAACCTGCCGCATACAACGAATTTACCCAAACAGACCTGATTAAGCCGGGTACCATCAACGTATTCCTGTTCATCGACGCCTCATTGGATGCAGGAACACTGACACGCGCCCTCGTCACCGCCACCGAAGCGAAATCGGCAGCCCTGCAGGAACTGATGGCAAACAGCATGTATTCAGAAGATTTGGCCACCGGTTCGGGAACTGATTCTCTGATAGCCATCTGTAATAAGGAGTCGGAGATAGTGCTTCAGAATAGTGGCAAACACGTGCTTTTGGGCGAAATGATAGGCCAAAGCGTGAAAGAGGCTATTACGGAAGCCTTATCCCGACAGACAAAGATGACCCCTACACGTCAGGCTTCGATCGAATGGCAGACCAAACGCTACGGAATAACGAGAGAAGCGATCGTCTCCGAATGCCTGCGCCTGTATCCACATCTGAAAAAAGAGGTTGTAGAAGCAGGAATCGGCGGTATCGATCGAGACAACCGTCTGGTAGCCGCAGTGGCTGCCATTGCTCATTTATGCGACCAAAATCGCTGGCAAATCATCTCGGACAAGAGCATGACCTGCACAGCCGAAAACATATTGCATACGATACTTTCGGAGAGAGGTATCTCCGAGGAGGCAAACAGAAAGGACATTGTATGCGGACAAGATGCGCCGGCATATCGTCAAGTGCTGTCCCTCTGCCTCCATACTCTTGCAAGAATACTCCACAACAGAATTATTCATTCATCACTT","7.00","0.00","38826","MIVRFAGRRGVVSTCNLNGGYREDLRYAFNNSCGRDPDVIAKRSVGMRGKTMIEHYAALAEELGLPLDKTTGMGTAALIENTATSSRQYHGVTVMAVATAGIDVNGGRAGEPAAYNEFTQTDLIKPGTINVFLFIDASLDAGTLTRALVTATEAKSAALQELMANSMYSEDLATGSGTDSLIAICNKESEIVLQNSGKHVLLGEMIGQSVKEAITEALSRQTKMTPTRQASIEWQTKRYGITREAIVSECLRLYPHLKKEVVEAGIGGIDRDNRLVAAVAAIAHLCDQNRWQIISDKSMTCTAENILHTILSERGISEEANRKDIVCGQDAPAYRQVLSLCLHTLARILHNRIIHSSL","698329 696977 [Bad Olap 771 166 0]","Most hits in gapped BLAST are to middle segment of sequence only.TIGR ID: PG0645","conserved hypothetical protein/possible htrD protein","Cytoplasm","PG0583 is essentially identical to a previously sequencedP.gingivalis protein in GenBank, CAA68896.Few significant hits in gapped BLAST to hypotethetical protein; e.g. residues 1-224 are 28% similar to gb|AAB99633.1| conserved hypothetical protein of Methanococcus jannaschii, residues 56-223 are 30% similar to dbj|BAB05306.1| iron(III) dicitrate transport system (permease) of Bacillus halodurans, residues 94-220 are 36% similar to dbj|BAA29907.1| 199aa long hypothetical protein of Pyrococcus horikoshii. ","
InterPro
IPR002808
Family
Adenosylcobinamide amidohydrolase, CbiZ
PF01955\"[2-214]TCbiZ


","BeTs to 3 clades of COG1865COG name: Uncharacterized ACRFunctional Class: SThe phylogenetic pattern of COG1865 is am-k-----------------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 127-218 are 40% similar to a (PROTEIN CONSERVED 199AA LONG MJ1613) protein domain (PD022649) which is seen in Q59008_METJA.","","Thu Jun 14 12:58:59 MDT 2001","","Thu Jun 14 12:58:59 MDT 2001","Thu Jun 14 12:58:59 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:58:59 MDT 2001","Thu Jun 14 12:58:59 MDT 2001","","Tue Jun 19 16:30:10 MDT 2001","Sat Jun 2 15:17:48 MDT 2001","Tue Jun 19 16:33:33 MDT 2001","Mon Jan 8 15:27:26 2001","","Tue Jun 19 16:30:10 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Sat Jun 2 15:17:48 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 1 to 221 (E-value = 1.2e-09) place PG0583 in the DUF105 family which is described as Domain of unknown function DUF105 (PF01955)","Tue Jun 19 16:30:10 MDT 2001","34540446","","Aduse-Opoku,J., Slaney,J.M., Rangarajan,M., Muir,J., Young,K.A. and Curtis,M.A., \"The Tla protein of Porphyromonas gingivalis W50: a homolog of the RI protease precursor (PrpRI) is an outer membrane receptor required for growth on low levels of hemin\", J. Bacteriol. 179 (15), 4778-4788 (1997). PubMed: 9244265.Slakeski N, Dashper SG, Cook P, Poon C, Moore C, Reynolds EC.A Porphyromonas gingivalis genetic locus encoding a heme transport system.Oral Microbiol Immunol. 2000 Dec;15(6):388-92.PMID: 11154437 ","","Tue Jun 19 16:33:33 MDT 2001","","1","","","PG0645" "PG0584","699162","698164","999","ATGATCCATACCGACAATGTGACCCTGACGGGACTATCTACCGGATACCGAAGCAAGAAAACGGAGCGCATCGTATCGAAGCTAATCGACCTTTCCATGCTTAATGGCGAACTGGTAATGCTGATGGGTCCGAACGGCTGCGGCAAATCCACGCTCATGCACACCATCGCAGGATTACTGCCACCTATTTCGGGGAATATCACCATCGCAGGACGCGACACACACGGTCTCCGCATGAGAGAGAAAGCCAAGATGCTCAGTCTGGTACTGACCGACAAAATAGCAGCGACGAATCTGACTGTTCGGGATATTGTCGTCATCGGACGCTATCCCTACGTCAATTATCGGGGTAGCCTGACCGCAAAGGACAAGGAGATTGTGAATGAATCGCTCATAGCATGCCGACTGATGGGATTCGAATCGCGCCAATACGGGGAATTAAGCGATGGAGAAAAACAGCGTGTAATGATAGCCCGCGCTTTAGCCCAACAGACTCCCGTGATGCTTCTTGACGAACCTACGGCACACCTCGACCTGCCAAGCCGTCTGGAGGTGATCATCATGCTGCGCGAATTGGCACGCAAAACGAACAAGAGTATCCTCGTTTCTACCCACGAAATGGATCTGGCCCTGCAATGGGCGGACACGGTATGGCTGATGAACAGCCAAGGGGAGATTTGTCGTGGGGCACCGGAGGATTTGGTACTGAACCACTGTTTTGAAAAAGTATTCGGCAACGAAACTCTTTCCTTCAATATAGACAGCGGAGCCTTCTCCGTCAAACATAAAACGGCTACACCTGTTTCTGTAGAAGGACAGGGTGCTGCCTACAAATGGACACTGAGTGCTTTGCACCGGAATGGCTATGTGGAATCTGCAGATGCCTCCGACCGCAAAATCACCGTGGGAGAGGGCTGCTGGATTCTGCAGGAGGGCGATTCCTCGAAAAGCTTCGACTCCATCGGCTCCTTGCTACAAACGCTGCACGCTCACCACGAA","7.10","0.43","36683","MIHTDNVTLTGLSTGYRSKKTERIVSKLIDLSMLNGELVMLMGPNGCGKSTLMHTIAGLLPPISGNITIAGRDTHGLRMREKAKMLSLVLTDKIAATNLTVRDIVVIGRYPYVNYRGSLTAKDKEIVNESLIACRLMGFESRQYGELSDGEKQRVMIARALAQQTPVMLLDEPTAHLDLPSRLEVIIMLRELARKTNKSILVSTHEMDLALQWADTVWLMNSQGEICRGAPEDLVLNHCFEKVFGNETLSFNIDSGAFSVKHKTATPVSVEGQGAAYKWTLSALHRNGYVESADASDRKITVGEGCWILQEGDSSKSFDSIGSLLQTLHAHHE","699162 698164 [Shorter 770 166 99]","TIGR ID: PG0646See ABC Transporters Analysis
","ferric enterobactin transport protein/iron(III) dicitrate transport system permease protein","Cytoplasm, Inner membrane","Numerous significant hits in gapped BLAST to Ferric enterobactin transport protein; e.g. residues 1-262 are 37% similar to gbAAB98878.1 ferric enterobactin transport ATP-binding protein of Methanococcus jannaschii, residues 1-262 are 37% similar to pirA64409 ferric enterobactin transport ATP-binding protein homolog of Methanococcus jannaschii, residues 2-249 are 35% similar to gbAAG07545.1AE004832_5 ferric enterobactin transport protein FepC of Pseudomonas aeruginosa.","
InterPro
IPR003439
Domain
ABC transporter related
PD000006\"[146-185]TABC_transporter
PF00005\"[36-224]TABC_tran
PS50893\"[2-247]TABC_TRANSPORTER_2
InterPro
IPR003593
Domain
AAA+ ATPase, core
SM00382\"[35-225]TAAA
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[21-245]TG3DSA:3.40.50.300
PTHR19222\"[7-247]TPTHR19222
PTHR19222:SF31\"[7-247]TPTHR19222:SF31
SSF52540\"[7-233]TSSF52540


","BeTs to 8 clades of COG1120COG name: ABC-type iron (III) transport system, ATPase componentFunctional Class: PThe phylogenetic pattern of COG1120 is AM-K--VcEB-Hujgp-----Number of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Mon Jul 28 15:23:35 2008","Mon Jan 8 15:54:58 2001","Mon Jul 28 15:23:35 2008","Mon Jan 8 15:47:19 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","PG0584 is similar to:PG0605 ABC transport system component; ATP-binding protein...PG0618 ABC transport component, ATPase component,PG0903 ABC transporter ATP binding protein,PG0254 ABC transporter/ATP-binding protein,PG1451 ABC transporter protein, ATP-binding protein,PG1477 ABC transporter ATPase,PG1533 ABC transporter,PG1211 ABC transporter, ATP-binding protein,PG1048 ABC transporter, ATP-binding protein,PG0566 ABC transporter protein,PG1917 cell-division ATP-binding protein,PG1497 ABC transporter protein, MSD-NBD fusion protein,PG1049 ABC transporter protein,PG0921 ABC transporter (ATP-binding protein),PG1923 ABC transporter (ATP-binding protein),PG1929 ABC transporter protein, NBD-NBD fusion protein,PG0844 ABC transporter protein,PG1084 ABC transporter ATP-binding protein,PG1467 ABC transporter protein,PG0233 ABC transporter ATPase.","Mon Apr 2 18:42:23 MDT 2001","Mon Jul 28 15:23:35 2008","-54% similar to PDB:2NQ2 An inward-facing conformation of a putative metal-chelate type ABC transporter. (E_value = 1.3E_21);-53% similar to PDB:1Z47 Structure of the ATPase subunit CysA of the putative sulfate ATP-binding cassette (ABC) transporter from Alicyclobacillus acidocaldarius (E_value = 9.1E_20);-51% similar to PDB:1F3O Crystal structure of MJ0796 ATP-binding cassette (E_value = 5.9E_19);-51% similar to PDB:1Q12 Crystal Structure of the ATP-bound E. coli MalK (E_value = 1.0E_18);-51% similar to PDB:1Q1B Crystal structure of E. coli MalK in the nucleotide-free form (E_value = 1.0E_18);","","","Residues 36 to 223 (E-value = 9.9e-47) place PG0584 in the ABC_tran family which is described as ABC transporter (PF00005)","Mon Apr 2 18:42:23 MDT 2001","34540447","","Slakeski N, Dashper SG, Cook P, Poon C, Moore C, Reynolds EC.A Porphyromonas gingivalis genetic locus encoding a heme transport system.Oral Microbiol Immunol. 2000 Dec;15(6):388-92.PMID: 11154437 ","","Fri Jun 15 14:41:52 MDT 2001","","1","","","PG0646" "PG0585","700204","699173","1032","ATGAAGCGATCATCATTCATATTCGGCACACTTCTTTTACTGACTGCCATGGCTTTCGTGACCGACCTCATATGGGGCAGTCTGGATATATCGCCGGCCGACGTGCTGCAAGCTCTGACCAACGGATCGGAAATGCAAACAACCAATGACTATGTCATTCGCAATTTCCGTCTGCCGAAGGCTCTGACCGCTCTCTTTGCCGGTGCCGGCATATCCATCGCAGGTCTGCAAATGCAGAGTCTCTTCCGCAATCCTCTGGCTGACACCTCTATTTTGGGGATCAATAGCGGAGCCGGTCTTGGAGTAGCCCTGTACATCATGTCATTCACCATCATACCCGGTCTCAGTCTGCACTCCGGCACGGCCGACACATGGGGCGTAGCTACGGCAGCCTGCATAGGTTCCATGCTGGTACTTCTGCTCATCTCGGCTGTAGCAGCGTGGCTCAGAGATATGGTCTCGGTGCTGATCGTTGGAGTGATGGTCGGCTTTTTGGCCAGTTCGTTTATATCCATTCTCCAGTTCTTTTCCGACAATGAAATGCTCAAAGGGTATCTGATCTGGTCTTTCGGCAGCGTGGCCGGCACGACATGGCGACAGCTATCCCTGATGATCCCCATTGTTTCGGGCGGTCTCTTCCTGTCCATGCTGATGCCCAAGTATATGAATGCGCTCAACATAGGAGAGAACTATGCTCGTAGCGTAGGTATCCACGTGGAGCGAGAGCGAATTATTCTGATCGGCATCACGAGTATCATTACCGGAACGATTACGGCTTTTACAGGCCCTATTGCCTTTTTGGGGATAGCCGTACCTCACTTCTCGCGCATCCTATTCAAAAGTTCGGACTACCGCATACTGCTCCCCGGCACCATGCTGTGCGGTGCTCTGCTGATGCTCGTGTGCGACATGATCACGCAGGTACCGGGCAAAGGCTTTGTATTGCCGATCAACGCCATCACCTCGATGATTGGTGCTCCCGTAGTAATCATGACGATCGCTCGCAACCGCAAAAAGCGTTTAATCTTCAAC","10.30","7.57","36930","MKRSSFIFGTLLLLTAMAFVTDLIWGSLDISPADVLQALTNGSEMQTTNDYVIRNFRLPKALTALFAGAGISIAGLQMQSLFRNPLADTSILGINSGAGLGVALYIMSFTIIPGLSLHSGTADTWGVATAACIGSMLVLLLISAVAAWLRDMVSVLIVGVMVGFLASSFISILQFFSDNEMLKGYLIWSFGSVAGTTWRQLSLMIPIVSGGLFLSMLMPKYMNALNIGENYARSVGIHVERERIILIGITSIITGTITAFTGPIAFLGIAVPHFSRILFKSSDYRILLPGTMLCGALLMLVCDMITQVPGKGFVLPINAITSMIGAPVVIMTIARNRKKRLIFN","700204 699173","TIGR ID: PG0647See ABC Transporters Analysis.
","permease protein (probable hemin permease, htrB)","Inner membrane, Cytoplasm","Numerous significant hits to permease proteins in gapped BLAST; e.g. residues 55-340 are 31% similar to emb|CAA54863.1| hemin permease of Yersinia enterocolitica, residues 7-340 are 28% similar to gb|AAC64869.1| ABC-type permease of Yersinia pestis, residues 2-339 are 28% similar to gb|AAG41410.1|AF304009_3 permease of Corynebacterium ulcerans.","
InterPro
IPR000522
Family
Bacterial transport system permease protein
PF01032\"[14-328]TFecCD
noIPR
unintegrated
unintegrated
SSF81345\"[1-336]TSSF81345


","BeTs to 8 clades of COG0609COG name: Iron, hemin, cobalamine permeasesFunctional Class: P,HThe phylogenetic pattern of COG0609 is AM-K--VCEB-Huj-------Number of proteins in this genome belonging to this COG is 2","***** PF01032 (FecCD transport family) with a combined E-value of 5.2e-27. PF01032A 57-98 PF01032B 262-276","Residues 226-335 are 29% similar to a (PROTEIN TRANSPORT PERMEASE IRON) protein domain (PD001557) which is seen in O58947_PYRHO.Residues 55-225 are 33% similar to a (PROTEIN TRANSPORT PERMEASE IRON) protein domain (PD001584) which is seen in P74980_YEREN.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Fri Jun 15 14:43:00 MDT 2001","Sat Jun 2 15:15:45 MDT 2001","Fri Mar 9 10:11:34 MST 2001","Mon Jan 8 15:58:47 2001","Fri Mar 9 10:11:34 MST 2001","Fri Mar 9 10:11:34 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 9-338 are 40% similar to PG0604, a possible iron transport protein.","Mon Apr 2 18:44:46 MDT 2001","Fri Mar 9 10:11:34 MST 2001","-48% similar to PDB:1L7V Bacterial ABC Transporter Involved in B12 Uptake (E_value = 2.3E_34);-50% similar to PDB:2NQ2 An inward-facing conformation of a putative metal-chelate type ABC transporter. (E_value = 1.7E_29);","","","Residues 26 to 335 (E-value = 9.1e-78) place PG0585 in the FecCD family which is described as FecCD transport family (PF01032)","Fri Mar 9 10:11:34 MST 2001","34540448","","Slakeski N, Dashper SG, Cook P, Poon C, Moore C, Reynolds EC.A Porphyromonas gingivalis genetic locus encoding a heme transport system.Oral Microbiol Immunol. 2000 Dec;15(6):388-92.PMID: 11154437 ","","Sat Jun 2 15:15:45 MDT 2001","","1","","","PG0647" "PG0586","701376","700204","1173","ATGCCTAAGAGGTTCGAATGGCTCTTCTATGCGTTTATCGCCTTTGCCTTATACTCCTGTAATGGTTCTTCACGCGGGAAAGGCACCGAAGTGGAAACGGTGTCGATAGATACGGCCGATTTTAATTTCCCAGTCAGATTCGAATATGCCAAAGGCATACAGACCGTCAATCATACCGGCTACAAAACCGTCTATATATTCCATCCGGACAAGCCCGACACGATGGCCGTCTATATCCTTTATCCTCGTGACAGCAAGCGTCCTGTGGCAAGACATCCCAAGGCCCTCTATATCCCCGTACCGGCACGCACTATAGCCTGTCTGTCCACGACGCAAATAGGCTCGCTCCCCCTACTCGATCAGACAGACAAACTGGTGGGTTGCATCAACCTGAAAAACATTTGCAATGCTGACATCCGCAATCGCATAAAGAAAGGGTATGTACAAGAGATCGGCACGGGCATGACCAAAAATATAGAGCAGATAGCCGGACTCCGCCCGGAGATCCTCCTGCAGGATTTATTCCACGTATCGGACAAGGACGAAGAGTTGATCGCTTCGGGCATCAACACCGTTTTATACAACGAATGGAAAGAGCGGGATCTACTCGGTCGTGCCGAATGGATGAAGCTAACGGCGATGCTTCTCAGCTGCAATCGTCGTGCTCATGAGGTTTTCGAACAGATAGAATCGGAGTATGCGGAGGCTCGCAAATTGGTGGCAGAAAAGACCGATACCATTGCCATCATGTATGGGCAGGACTATAATGGGACTTGGTACCTGCCCGGAGAGTACAGCTACAGTACAGCCATGTTCAGAGATGCACGAGTATCTTTCGACTATGCAGCCGGCAAAGTCAGTAGCCAGCCGTGTAGTTTCGAGTATATTTTCAGTCGCCATCGTCATGCCGAAATTTGGATATGTACGATGATGGGAAACATCAAGACAATGGATGAATTTCTCGCTTTGAACGAACGCTACCGACATTTCGATGCCACCCAAACCGGTAAGGTTTACATCGATCGCAAGCGCGTGAACGAGAATGGGGGCAATGACTACTGGGAGAGCGGGCTGTATCGTCCCGATCTTTTGCTCAAAGACATCATCAAGATCACCCGGCCGGAGCTGCTACCCGAGTACGAGACTTCATACTGGATAGAACTGAAGAGGCCA","7.20","0.62","45241","MPKRFEWLFYAFIAFALYSCNGSSRGKGTEVETVSIDTADFNFPVRFEYAKGIQTVNHTGYKTVYIFHPDKPDTMAVYILYPRDSKRPVARHPKALYIPVPARTIACLSTTQIGSLPLLDQTDKLVGCINLKNICNADIRNRIKKGYVQEIGTGMTKNIEQIAGLRPEILLQDLFHVSDKDEELIASGINTVLYNEWKERDLLGRAEWMKLTAMLLSCNRRAHEVFEQIESEYAEARKLVAEKTDTIAIMYGQDYNGTWYLPGEYSYSTAMFRDARVSFDYAAGKVSSQPCSFEYIFSRHRHAEIWICTMMGNIKTMDEFLALNERYRHFDATQTGKVYIDRKRVNENGGNDYWESGLYRPDLLLKDIIKITRPELLPEYETSYWIELKRP","701409 700204","TIGR ID: PG0648See ABC Transporters Analysis.
","probable htrA protein (ABC solute binding protein)","Cytoplasm, Periplasm","All two significant hits in gapped BLAST are to hypothetical protein in Methanococcus jannaschii","
InterPro
IPR002491
Family
Periplasmic binding protein
PS50983\"[104-376]TFE_B12_PBP
noIPR
unintegrated
unintegrated
PS51257\"[1-20]TPROKAR_LIPOPROTEIN
SSF53807\"[101-376]TSSF53807


","BeTs to 3 clades of COG0614COG name: Ferrichrome-binding periplasmic proteinsFunctional Class: PThe phylogenetic pattern of COG0614 is aM-K--VCEBRhUJ-------Number of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","Residues 101-387 are 22% similar to a (PROTEIN MJ0642 MJ0878) protein domain (PD041247) which is seen in Y878_METJA.Residues 139-340 are 26% similar to a (PROTEIN PRECURSOR SIGNAL PERIPLASMIC) protein domain (PD002027) which is seen in Y872_METJA.","","Thu Jun 14 12:59:58 MDT 2001","","Thu Jun 14 12:59:58 MDT 2001","Thu Jun 14 12:59:58 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:59:58 MDT 2001","Thu Jun 14 12:59:58 MDT 2001","","Tue Jun 19 16:29:41 MDT 2001","Fri Jun 15 14:46:41 MDT 2001","Tue Jun 19 16:29:41 MDT 2001","Mon Jan 8 16:03:56 2001","","Tue Jun 19 16:27:43 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 3-389 are 24% similar to PG0603, a possible ferrichrome-binding periplasmic protein.","Tue Jun 19 16:29:41 MDT 2001","Mon Apr 2 18:46:37 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Jun 19 16:27:43 MDT 2001","34540449","","Slakeski N, Dashper SG, Cook P, Poon C, Moore C, Reynolds EC.A Porphyromonas gingivalis genetic locus encoding a heme transport system.Oral Microbiol Immunol. 2000 Dec;15(6):388-92.PMID: 11154437 ","","Thu Jun 14 12:59:58 MDT 2001","","1","","","PG0648" "PG0587","701961","702542","582","ATGTTTCAGATCCAAGAAACGATCGTCAGCCCTGACCTCTTCGACAAGTATTTTGTCTGCGATTATGCTACGTGTCAGGGGATTTGCTGCGTGGAAGGAGAAAGCGGTGCTCCTCTCGAAGCGGGTGAAGCCGATTTGCTGCGCAAGTATCTCGATGCCGTGCGCGATATGCTTTCGTCCGAAGCCCTCGAAGTGATCGATAAGCAGGGCGTAAGCTATTTGGATGTGGAAGGAGACGAAGTCACCAGCATTGTAAACGGACGGGACTGCGTTTTCACCACGTACGACGAAAAAGGGAATTGCCTCTGCGCCTTCGAACGTGCATACCGTTTGGGTAAGATCGACTTCCCAAAACCGCTCAGTTGTCATTTATACCCCGTCCGTTTGACTCGTTACAGTAGCTTTACGGCCGTCAATTACCACCGTTGGGAGATTTGCCGGTGTGCGGAGGCTTTAGGTCGTCAGATGGGAACCCCTCTGTATAGATTCCTAAAAGAGCCTCTCATACGGGCATTCGGTAAGGAATGGTATAAAGAAATGGAAGAAATAGCCGCTCTATTGGAGCAAAATCCGCTGAAACGA","4.80","-7.98","22217","MFQIQETIVSPDLFDKYFVCDYATCQGICCVEGESGAPLEAGEADLLRKYLDAVRDMLSSEALEVIDKQGVSYLDVEGDEVTSIVNGRDCVFTTYDEKGNCLCAFERAYRLGKIDFPKPLSCHLYPVRLTRYSSFTAVNYHRWEICRCAEALGRQMGTPLYRFLKEPLIRAFGKEWYKEMEEIAALLEQNPLKR","701961 702542","TIGR ID: PG0649","hypothetical protein","Cytoplasm","No significant hits in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Mon Jan 8 16:05:13 2001","Mon Jan 8 16:05:13 2001","Mon Jan 8 16:05:13 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540450","","","","","","1","","","PG0649" "PG0588","703055","702675","381","ATGACCGACAAATTACCTTTTGCTCTCTATTCGCGGTGCGTCAAAGCCGGCAAACGTTTCTACTACATTGATGCCAAACGCGATTCTAAAGGAAATGACTATCTGGTGATAACGGAAAGTAACAGTGCCGAAGAAGGTTCTGCAATGACGCGGCATAAGGTTTTCCTCTATCGCGAAGATTTTGCCAAATTCACAGAAGCCTTTTTGGACGTGCTAAAGTCTTTCGAAAAGAGGAGCGGAGTATCCGGATGCGAACAGGCGATCGGTTTGTCTGAATTGGAGCAGAGCCTTTCCGATATGACAACGGGAGTGGAGGGTTTAGCAGAGTCCTCCGATTCTATTTTGGAGGAGGATGAACCGCTGAAAATAGATTTCGATTTT","4.40","-8.85","14291","MTDKLPFALYSRCVKAGKRFYYIDAKRDSKGNDYLVITESNSAEEGSAMTRHKVFLYREDFAKFTEAFLDVLKSFEKRSGVSGCEQAIGLSELEQSLSDMTTGVEGLAESSDSILEEDEPLKIDFDF","703055 702675","TIGR ID: PG0650","conserved hypothetical protein","Cytoplasm","No significant hits in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Sep 10 15:38:26 2004","Fri Jan 5 16:43:24 2001","Fri Jan 5 16:43:24 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Sep 10 15:38:26 2004","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540451","","","","","","1","","","PG0650" "PG0589","703713","703165","549","ATGATGGATCCGATCAGCATCATCAATAAGTACTACACTGAGGGAACCAACCAATACCATATTTTAGTAGAGCATAGCCGTGATGTGGCGGCCTTGGCTCTTCGTATCGTCGAAATCCATCCCGAGCTTCAGGCGGATCGTCTCTTCGTCGAAGAAGCTGCCATGCTGCACGACATCGGCATATTCTTGACCGATGCCGAGAGTATTGCCTGTTTTGGGAAAGAGCCCTATATCCTGCATGGATATATGGGAGCCAATATCCTGCGCAAAGAGGGTTATCCGCGCCATGCACTGGTTTGCGAACGCCATACGGGTTCAGGATTGACTTCGGAAGACATTGCAGCCAGACAGATTGCACTTCCTCCGGGTATTTATACCCCTCAGAGTATTGAGGAGAAAATTGTTTGTTATGCCGATAAGTTTTTCTCCAAGACAAAACTCCATCGTCAGAAAAAGCTGGAAGACGTCAGGCGCAGTATGCTCTCCTACGGAGCCGATAGCCTCCGCCGTTTCGACGAGATGCACGCCTTATTCAAAATCCCATTAGGA","6.80","-0.98","20834","MMDPISIINKYYTEGTNQYHILVEHSRDVAALALRIVEIHPELQADRLFVEEAAMLHDIGIFLTDAESIACFGKEPYILHGYMGANILRKEGYPRHALVCERHTGSGLTSEDIAARQIALPPGIYTPQSIEEKIVCYADKFFSKTKLHRQKKLEDVRRSMLSYGADSLRRFDEMHALFKIPLG","703713 703165","TIGR ID: PG0651","conserved hypothetical protein","Cytoplasm","Few significant hits in gapped BLAST; e.g. residues 22-143 are 38% similar to gb|AAB86140.1| conserved protein of Methanothermobacter thermoautotrophicus, residues 22-175 are 34% similar to emb|CAC12060.1| conserved hypothetical protein of Thermoplasma acidophilum, residues 5-179 are 31% similar to gb|AAB98768.1| conserved hypothetical protein of Methanococcus jannaschii.","
InterPro
IPR003607
Domain
Metal-dependent phosphohydrolase, HD region
SM00471\"[18-153]THDc
InterPro
IPR006674
Domain
Metal-dependent phosphohydrolase, HD region, subdomain
PF01966\"[22-144]THD
InterPro
IPR006675
Domain
HDIG
TIGR00277\"[18-106]THDIG


","BeTs to 7 clades of COG1418COG name: Uncharacterized hydrolases of the HD superfamilyFunctional Class: RThe phylogenetic pattern of COG1418 is Amtk-qv-eB--ujgpol---Number of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","Residues 22-143 are 38% similar to a (PROTEIN CONSERVED MG130 TRANSMEMBRANE) protein domain (PD003868) which is seen in O27704_METTH.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Mon Jan 8 16:08:55 2001","Mon Jan 8 16:08:55 2001","Mon Jan 8 16:08:55 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","Residues 22 to 144 (E-value = 2.3e-06) place PG0589 in the HD family which is described as HD domain (PF01966)","","34540452","","","","","","1","","","PG0651" "PG0590","704292","703993","300","ATGATTAAACATATCGTTATGTTCAAGTTGGCAGGTTTTGACTCTGCAGAAGCCAAAACAAAACACCTGCACCGCATCAAGGATGCTCTGGAAGCCCTTGTACAGGTAATAGAACCCCTGAGAAGCATGAGCGTTTGCCTCAATATGAATCCTTCCGAAGAATACGACTTTATGTTGGAAGCAGACCTCAATAGCCTCGCCGATGTCAAAGCCTATGCCGAGCATCCTGCTCATACGACCGTCGTTCGAGAATTGATAGCTCCATATAAAGCCGGTCGGGCGTGTATAGACTTCGAGATC","6.00","-2.90","11256","MIKHIVMFKLAGFDSAEAKTKHLHRIKDALEALVQVIEPLRSMSVCLNMNPSEEYDFMLEADLNSLADVKAYAEHPAHTTVVRELIAPYKAGRACIDFEI","704292 703993","TIGR ID: PG0652","conserved hypothetical protein","Cytoplasm","Its nearest neighbor in the NR database is gi:53714481 from Bacteroides fragilis YCH46.","
InterPro
IPR011008
Domain
Dimeric alpha-beta barrel
SSF54909\"[1-99]TDimer_A_B_barrel
InterPro
IPR013097
Domain
Stress responsive alpha-beta barrel
PF07876\"[2-100]TDabb
noIPR
unintegrated
unintegrated
G3DSA:3.30.70.900\"[1-98]TG3DSA:3.30.70.900


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Mar 3 13:42:10 2005","Thu Mar 3 13:42:10 2005","Fri Jan 5 16:44:32 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 3 13:42:10 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540453","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Thu Mar 3 13:43:12 2005","","1","","","PG0652" "PG0591","705545","704307","1239","ATGAGTACAACACGAAAACTCATTTTGGCTAATATCCACGGAGTAGATAAGCCGGGTGTTACTGCCGAATTAACAGCCATTCTGGCTAAACATAACGCATTCATTCTGGATATCGGCCAAGCCGATATCCATAATAACCTCTCGCTCGGAATACTTTTCCAGACAGACGAAAGTCATTCGGGATCGATCCTGAAAGACCTTTTGTTCAAAAGCTATGAGTTGGATGTGACTGTCAGATTCGAACCCATCACGGAAGAAGCCTATAGCGAATGGGTGGGAATGCAGGGGCGAAACCGATACATCATCACCGTAGTGGCTCGGAAGATCACGGCTGAGATGATTGCAGGAATTGCCCGATCCAGTGCTGAGCAAGGATTGAATATCGATGATATTAAACGATTGACGGGACGTATTCCGCTCAATGAAACGGATCGCTCGCCCAAAGCGAGTGTAGAATTTTCCATGCGTGGGACTCCTACGGATATAGAGAAGCTGCAGCGCAACTTTATGGAAATGGCTTCTCAGCTCAATATGGATATTTCGTTCCAGCGGGAGAGCATGTTCCGTCGCATGCGTCGTCTCATTTGCTTCGATATGGACTCTACCCTGATTCAGACAGAGGTCATAGACGAACTGGCTATCAGAGCCGGAGTAGGCGATCGGGTAAAAGCCATTACTGAAAGTGCCATGAGAGGCGAAATCGACTTTACCGAAAGCTTCCGCCAGCGAGTGGCTCTGCTGAAAGGACTTGATGTATCTGTGATGCAGGAGATTGCCGAAAGTCTTCCTATTACCGAAGGTGTGGAGCGGCTAATGAAGATCCTCAAGATGGTAGGCTTCAAGATCGCTATCCTCTCGGGGGGATTCATGTACTTCGGCAACTATCTAGCCAAGAAGTTCGGAATCGACTATGTCTATGCCAATGAATTGGAAGTAAAAGACGGTAAGCTCACGGGCCGATATGTCGGTGAGGTGGTGGATGGACGACGCAAAGCCGAACTGCTCAAGCTCATTGCTCAGGTAGAGAAGATAGACCTCATGCAGACTGTTGCCGTAGGCGATGGTGCCAATGACCTGCCTATGATTGGACTTGCGGGTCTCGGTATTGCATTCAACGCCAAACCGAAGGTAAAGGCCACAGCTCAGCAGAGCCTTTCCACTGTCGGTCTTGACGGGGTCCTGTATTTCCTCGGATATAAAGATTCGCATATAGACGATGAATTGCTTACGGAAAAATTA","5.70","-4.80","45920","MSTTRKLILANIHGVDKPGVTAELTAILAKHNAFILDIGQADIHNNLSLGILFQTDESHSGSILKDLLFKSYELDVTVRFEPITEEAYSEWVGMQGRNRYIITVVARKITAEMIAGIARSSAEQGLNIDDIKRLTGRIPLNETDRSPKASVEFSMRGTPTDIEKLQRNFMEMASQLNMDISFQRESMFRRMRRLICFDMDSTLIQTEVIDELAIRAGVGDRVKAITESAMRGEIDFTESFRQRVALLKGLDVSVMQEIAESLPITEGVERLMKILKMVGFKIAILSGGFMYFGNYLAKKFGIDYVYANELEVKDGKLTGRYVGEVVDGRRKAELLKLIAQVEKIDLMQTVAVGDGANDLPMIGLAGLGIAFNAKPKVKATAQQSLSTVGLDGVLYFLGYKDSHIDDELLTEKL","705545 704307","TIGR ID: PG0653","phosphoserine phosphatase","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 5-401 are 55% similar to gb|AAG08345.1|AE004909_1 probable phosphoserine phosphatase of Pseudomonas aeruginosa, residues 8-405 are 38% similar to emb|CAA16127.1| serB2 of Mycobacterium tuberculosis, residues 8-405 are 37% similar to emb|CAB50876.1| putative phosphoserine phosphatase of Streptomyces coelicolor A3(2).This sequence is similar to BT0832.","
InterPro
IPR002912
Domain
Amino acid-binding ACT
PF01842\"[8-67]TACT
InterPro
IPR004469
Domain
Phosphoserine phosphatase SerB
TIGR00338\"[179-397]TserB
InterPro
IPR005834
Domain
Haloacid dehalogenase-like hydrolase
PF00702\"[192-375]THydrolase
InterPro
IPR006383
Domain
HAD-superfamily hydrolase, subfamily IB, PSPase-like
TIGR01488\"[194-365]THAD-SF-IB
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.1000\"[249-398]TG3DSA:3.40.50.1000
PTHR10000\"[57-404]TPTHR10000
SSF55021\"[3-88]TSSF55021
SSF56784\"[191-398]TSSF56784


","BeTs to 8 clades of COG0560COG name: Phosphoserine phosphataseFunctional Class: EThe phylogenetic pattern of COG0560 is amtky---e-Rhuj-------Number of proteins in this genome belonging to this COG is 2","***** IPB001757 (E1-E2 ATPases phosphorylation site) with a combined E-value of 9.4e-09. IPB001757D 262-302 IPB001757F 349-372***** IPB000150 (Hypothetical cof family) with a combined E-value of 3.3e-06. IPB000150A 198-213 IPB000150E 350-374","Residues 8-183 are 25% similar to a (HYPOTHETICAL 43.1 KD PROTEIN) protein domain (PD102554) which is seen in O53289_MYCTU.Residues 190-323 are 53% similar to a (PHOSPHATASE PHOSPHOSERINE HYDROLASE) protein domain (PD005736) which is seen in SERB_ARCFU.Residues 325-404 are 43% similar to a (PHOSPHOSERINE PHOSPHATASE EC 3.1.3.3) protein domain (PD095686) which is seen in SERB_YEAST.Residues 331-382 are 63% similar to a (PROTEIN PHOSPHOSERINE PHOSPHATASE HYDROLASE INTERGENIC) protein domain (PD001342) which is seen in SERB_ECOLI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Mon Jan 8 16:14:06 2001","Wed Dec 3 09:31:42 2003","Mon Jan 8 16:14:06 2001","Fri Mar 9 15:53:34 MST 2001","Fri Mar 9 15:53:34 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 165-398 are 36% similar to PG1043, a predicted phosphoserine phosphatase.","Mon Apr 2 18:48:23 MDT 2001","Fri Mar 9 15:53:34 MST 2001","-65% similar to PDB:1F5S CRYSTAL STRUCTURE OF PHOSPHOSERINE PHOSPHATASE FROM METHANOCOCCUS JANNASCHII (E_value = 3.7E_45);-65% similar to PDB:1J97 Phospho-Aspartyl Intermediate Analogue of Phosphoserine phosphatase (E_value = 3.7E_45);-65% similar to PDB:1L7M HIGH RESOLUTION LIGANDED STRUCTURE OF PHOSPHOSERINE PHOSPHATASE (PI COMPLEX) (E_value = 3.7E_45);-65% similar to PDB:1L7N TRANSITION STATE ANALOGUE OF PHOSPHOSERINE PHOSPHATASE (ALUMINUM FLUORIDE COMPLEX) (E_value = 3.7E_45);-65% similar to PDB:1L7O CRYSTAL STRUCTURE OF PHOSPHOSERINE PHOSPHATASE IN APO FORM (E_value = 1.4E_44);","","","Residues 8 to 77 (E-value = 4.6e-05) place PG0591 in the ACT family which is described as ACT domain (PF01842)Residues 192 to 375 (E-value = 6.2e-26) place PG0591 in the Hydrolase family which is described as haloacid dehalogenase-like hydrolase (PF00702)","Wed Dec 3 09:31:42 2003","34540454","","","","","","1","","","PG0653" "PG0592","706776","705607","1170","ATGAAACGATTACTCCCCTTTCTCCTTTTAGCAGGACTCGTAGCCGTAGGAAACGTGTCTGCTCAGTCACCCCGAATCCCTCAAGTGGATGTACACACTCGCATCGCAAGAAATGCCCGTTATCGACTGGACAAGATCAGTGTCCCGGATTCTCGTCAGATATTCGATTACTTCTATAAAGAAGAAACGATACCCACTAAAATACAAACGACCACAGGAGGTGCAATTACAAGCATCGATTCGCTTTTCTATGAAGACGACAGGTTGGTTCAGGTGCGCTATTTTGACAATAACCTTGAATTAAAACAAGCGGAGAAGTATGTATACGACGGTTCTAAGCTGGTCCTTCGAGAAATTCGCAAGTCGCCGACAGACGAAACGCCAATAAAGAAAGTTAGCTATCACTATCTCTGTGGCAGCGATATGCCTTTTGAGATTACGACAGAGATGAGCGATGGCTATTTTGAAAGCCATACGCTTAACTATCTGAATGGAAAGATTGCCCGAATAGATATCATGACTCAACAGAACCCATCGGCCGAATTGATCGAAACGGGTAGAATGGTATATGAGTTTGATGCCAATAATGATGCTGTACTGCTTCGTGACAGTGTATTTCTTCCTCTTCAAAACAAGTGGGTAGAAATGTTTACTCACCGTTATACATACGACAATAAGCATAATTGTATTCGTTGGGAACAAGACGAATTCGGCACCCTCACCCTTGCCAACAACTTCGAATACGACACCACTATCCCTCTGTCGTCTGTATTGTTCCCCACGCATGAGGAGTTCTTCCGTCCTCTTCTTCCCAATTTTATGAAGCATATGCGTACGAAGCAAACGTATTTCAATAACTCCGGAGAAGGCTTGTCAGAGGTATGCGATTACAACTACTTCTATACCGATATGCAGGGTAATGCACTGACCGATGTTGCCGTGAACGAATCGATCAAGATTTATCCTCGTCCTGCCACGGATTTTCTGCGTATAGAAGGTTCGCAACTGCTTCGCCTTTCGCTATTCGACATGAACGGGAAGCTCATCAGAGCTACCGAATTGACAGGCGATTTGGCCATTATCGGAGTTGCATCTCTTCCGAGAGGCACTTACATCGCAGAAATAACTGCTGCAAACAGCAAAACCATACGTGCAAAAGTATCGCTCAGA","6.00","-4.43","44854","MKRLLPFLLLAGLVAVGNVSAQSPRIPQVDVHTRIARNARYRLDKISVPDSRQIFDYFYKEETIPTKIQTTTGGAITSIDSLFYEDDRLVQVRYFDNNLELKQAEKYVYDGSKLVLREIRKSPTDETPIKKVSYHYLCGSDMPFEITTEMSDGYFESHTLNYLNGKIARIDIMTQQNPSAELIETGRMVYEFDANNDAVLLRDSVFLPLQNKWVEMFTHRYTYDNKHNCIRWEQDEFGTLTLANNFEYDTTIPLSSVLFPTHEEFFRPLLPNFMKHMRTKQTYFNNSGEGLSEVCDYNYFYTDMQGNALTDVAVNESIKIYPRPATDFLRIEGSQLLRLSLFDMNGKLIRATELTGDLAIIGVASLPRGTYIAEITAANSKTIRAKVSLR","706776 705607","TIGR ID: PG0654","hypothetical protein","Cytoplasm, Outer membrane","PG0592 is identical to a previously sequencedP.gingivalis, strain W50, protein in GenBank, gb|AAD39497.1|AF145801.No significant hits in gapped BLAST. ","
noIPR
unintegrated
unintegrated
signalp\"[1-21]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Mon Jan 8 16:18:12 2001","Mon Apr 2 18:57:00 MDT 2001","Mon Jan 8 16:18:12 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 74-390 are 27% similar to PG1572 and residues 298-381 are 28% simlar to PG1251, a predicted thiol protease.","Mon Apr 2 18:50:28 MDT 2001","Mon Apr 2 18:50:28 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Apr 2 18:50:28 MDT 2001","34540455","Mon Apr 2 18:57:00 MDT 2001","Sequenced by Ross,B.C., Barr,I., Patterson,M., Agius,C., Rothel,L., Margetts,M., Hocking,D. and Webb,E., Porphyromonas gingivalis polypeptides and nucleic acids, Patent: Australia (AU 98/01023)-PCT 10-DEC-1998; CSL Ltd 45 Poplar Road R&D Parkville, Victoria Australia.","","Mon Apr 2 18:57:00 MDT 2001","","1","","","PG0654" "PG0592.1","707188","707039","150","ATGAAAAGAACATATCAACCCTCTAACCGTAAGAGACTGAACAAGCATGGCTTTCGCTCTCGTATGGCAACGGCAAATGGCCGTCGTGTATTGGCCGCTCGCCGTGCAAAAGGCCGTGCCAAACTGACCGTTTCTGACGAATTCGTAGGC","0.00","0.00","5728","MKRTYQPSNRKRLNKHGFRSRMATANGRRVLAARRAKGRAKLTVSDEFVG","","TIGR ID PG0656","50S ribosomal protein L34","Cytoplasm, Extracellular","Numerous hits using gapped BLAST with 54-77% similarity to 50S ribosomal protein L34 including residues 1-47 are 72% similar to gi|6459950|gb|AAF11700.1|AE002049_5 (AE002049) ribosomal protein L34 of Deinococcus radiodurans and residues 1-44 are 77% similar to gi|12722979|gb|AAK04229.1|AE006251_5 (AE006251) 50S ribosomal protein L34 of Lactococcus lactis subsp. lactis.","
InterPro
IPR000271
Family
Ribosomal protein L34
PD003101\"[1-26]TRibosomal_L34
PF00468\"[1-44]TRibosomal_L34
TIGR01030\"[1-44]TrpmH_bact
PS00784\"[2-21]TRIBOSOMAL_L34


","BeTs to 11 clades of COG0230COG name: Ribosomal protein L34 Functional Class: J The phylogenetic pattern of COG0828 is ----yqvcebrhujgpolinx Number of proteins in this genome belonging to this COG is 1","","","Tue Jul 3 17:12:41 MDT 2001","Tue Jul 3 17:12:41 MDT 2001","Tue Jul 3 17:12:41 MDT 2001","Tue Jul 3 17:12:41 MDT 2001","Tue Jul 3 17:13:28 MDT 2001","Tue Jul 3 17:12:41 MDT 2001","Tue Jul 3 17:12:41 MDT 2001","Tue Jul 3 17:13:28 MDT 2001","Tue Jul 3 17:13:28 MDT 2001","Tue Jul 3 17:12:41 MDT 2001","Thu Jul 5 10:47:01 MDT 2001","Tue Jul 3 17:12:41 MDT 2001","Thu Jul 5 10:47:01 MDT 2001","Tue Jul 3 17:18:43 MDT 2001","Tue Jul 3 17:12:41 MDT 2001","Tue Jul 3 17:12:41 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Thu Jul 5 10:34:16 MDT 2001","Tue Jul 3 17:12:41 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 1 to 44 (E-value = 1.4e-19) place PG0592.1 in the Ribosomal_L34 family which is described as Ribosomal protein L34 (PF00468)","Tue Jul 3 17:12:41 MDT 2001","34540457","","","","","","1","Tue Jul 3 17:12:41 MDT 2001","","PG0656" "PG0593","707873","707253","621","TTGATCGAAAAATCTTGTTGTTTTATGCTGGACAATCTGAAGAAATATAAGATCGTACTCGGATCGCAATCACCTCGAAGAAAAGAACTCCTCTCCGGTCTTGATATTCGATTCGAACAAAAGGCCATGCCGGACATCGCCGAAGATTATCCTGCCGGTCTTGATCGGGAGAAGGTGCCGCTCTATCTTGCTCGAATGAAAGCCGAGGCTTATCGATCGAAAGGTATGATGCAGGACAGTACTTTGTTGATTACGGCCGATACGGTGGTTATCATTGATGGTACTATTCTCGGCAAACCGCAAGACAGAGAAGAGGCCGCTCGGATGCTACGTACGTTAAGCGGGCGTACGCATCAGGTGGTGACCGGTGTGTGCATTAGCCACCGGTGGGAGACAAGGGCTTTCTCGTGTTCCAGTCTGGTAACCTTTGCGCATCTGAGTGATGAGGAGATCGATTATTATCTCGAACGCTATCGCCCCTATGACAAAGCCGGTTCGTACGGCATACAGGAATGGATAGGCTACATCGCCATTCAGCGAGTGGAGGGTTCGTTCTACAATGTCATGGGACTACCCGTTCATTTGCTCTATAATGAACTGAAAGACTTTGGCGAATCAAAT","6.50","-1.22","23675","LIEKSCCFMLDNLKKYKIVLGSQSPRRKELLSGLDIRFEQKAMPDIAEDYPAGLDREKVPLYLARMKAEAYRSKGMMQDSTLLITADTVVIIDGTILGKPQDREEAARMLRTLSGRTHQVVTGVCISHRWETRAFSCSSLVTFAHLSDEEIDYYLERYRPYDKAGSYGIQEWIGYIAIQRVEGSFYNVMGLPVHLLYNELKDFGESN","707873 707253","TIGR ID: PG0657","MAF protein (MAF/YMDE/YCEFrelated)","Cytoplasm","Significant hits with gapped BLAST to MAF proteins; e.g. residues 18-203 are 41% similar to MAF protein (Z99118) of Bacillus subtilis, residues 17-204 are 39% similar to maf protein (AE001801) of Thermotoga maritima, residues 18-204 are 42% similar to Maf/YceF/YhdE family protein (AE002415) of Neisseria meningitidis, residues 17-206 are 34% similar to Maf-type protein (AE001308) of Chlamydia trachomatis.","
InterPro
IPR003697
Family
Maf-like protein
PF02545\"[16-206]TMaf
TIGR00172\"[14-201]Tmaf: septum formation protein Maf
noIPR
unintegrated
unintegrated
G3DSA:3.90.950.10\"[14-207]Tno description
PTHR11746\"[76-203]TO-METHYLTRANSFERASE


","BeTs to 10 clades of COG0424COG name: Putative inhibitor of septum formationFunctional Class:  DThe phylogenetic pattern of COG0424 is ---kyqvcEbr-uj----inxNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 18-193 are 42% similar to a (PROTEIN MAF INTERGENIC REGION) protein domain (PD005766) which is seen in MAF_BACSU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Apr 7 10:02:39 MDT 2000","Fri Apr 7 10:02:39 MDT 2000","Wed Mar 22 10:11:37 MST 2000","Fri Apr 7 10:02:39 MDT 2000","Fri Apr 7 10:02:39 MDT 2000","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Fri Apr 7 10:02:39 MDT 2000","","-60% similar to PDB:1EX2 CRYSTAL STRUCTURE OF BACILLUS SUBTILIS MAF PROTEIN (E_value = 2.0E_31);-60% similar to PDB:1EXC CRYSTAL STRUCTURE OF B. SUBTILIS MAF PROTEIN COMPLEXED WITH D-(UTP) (E_value = 2.0E_31);-53% similar to PDB:2P5X Crystal structure of Maf domain of human N-acetylserotonin O-methyltransferase-like protein (E_value = 3.4E_23);-41% similar to PDB:1NB4 HC-J4 RNA polymerase apo-form (E_value = 3.4E_23);-41% similar to PDB:1NB6 HC-J4 RNA polymerase complexed with UTP (E_value = 3.4E_23);","","","Residues 16 to 206 (E-value = 3.5e-52) place PG0593 in the Maf family which is described as Maf-like protein (PF02545)","Fri Apr 7 10:02:39 MDT 2000","34540458","","","Butler YX, Abhayawardhane Y, Stewart GC. Amplification of the Bacillus subtilis maf gene results in arrested septum formation. J Bacteriol 1993 May;175(10):3139-45. PubMed: 8387996. ","","Fri Apr 7 10:02:39 MDT 2000","1","","","PG0657" "PG0594","708410","707892","519","ATGAGTAGTATTCCATTCGACCTGAAGTCCATACGGGGATTCGTCTTCGATGTGGACGGAGTGATCAGCCATACCGTTTCGGCTATGGATGCCGAAGGCCAGCCTATGCGAACGATGAATGTAAAAGACGGTTATGCCATGCAATATGCCGTCAAGCAAGGCTTCTTGCTGGCCATCATCACAGGCGGATACAGTCCGGCCATAGCCAAACGGGCAGAATATCTCGGCATCAAACATGTCTATATGCGTTCGTCCAACAAGGTGGAGCAGCTCGAACACCTCCTGCAGGAGACCGGGTTGAAAGCCGAAGAGATAGTTTATATAGGGGACGATATACCCGATCTGCCGGTGATGCAGAGGGTGGCTTTGCCCGTTGCCCCGGCGGATGCAGTGCCGGAGATCAAACAGGTGGCCAAATACATATCGCACTGCCGGGGAGGAGAGGGCGTCGTCCGCGATGTCATCGAGCAAACGCTGAAAGCACAAGGCCGCTGGGCACAGGGGAATGGGTTCGGATGG","6.50","-1.09","18995","MSSIPFDLKSIRGFVFDVDGVISHTVSAMDAEGQPMRTMNVKDGYAMQYAVKQGFLLAIITGGYSPAIAKRAEYLGIKHVYMRSSNKVEQLEHLLQETGLKAEEIVYIGDDIPDLPVMQRVALPVAPADAVPEIKQVAKYISHCRGGEGVVRDVIEQTLKAQGRWAQGNGFGW","708410 707892 [Delay by 258 785 239 0]","TIGR ID: PG0658","3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase)","Cytoplasm","Numerous significant hits in gapped BLAST to hypothetical protein; e.g. residues 2-163 are 35% similar to gbAAG07846.1AE004860_2 conserved hypothetical protein of Pseudomonas aeruginosa, residues 9-165 are 36% similar to embCAC12689.1 hypothetical protein of Thauera aromatica, residues 9-170 are 33% similar to gbAAC76230.1 hypothetical protein ofEscherichia coli K12.","
InterPro
IPR005834
Domain
Haloacid dehalogenase-like hydrolase
PF00702\"[46-131]THydrolase
InterPro
IPR006549
Domain
HAD-superfamily hydrolase, subfamily IIIA
TIGR01662\"[12-130]THAD-SF-IIIA
InterPro
IPR008230
Family
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
PIRSF006118\"[2-173]TKDO8-P_Ptase
InterPro
IPR010023
Domain
Phosphatase kdsC
TIGR01670\"[11-164]TYrbI-phosphatas
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.1000\"[4-166]TG3DSA:3.40.50.1000
PTHR21485\"[21-145]TPTHR21485
PTHR21485:SF10\"[21-145]TPTHR21485:SF10
SSF56784\"[7-165]TSSF56784


","BeTs to 3 clades of COG1778COG name: Uncharacterized proteins of HAD superfamily, CMP-Neu5Ac homologsFunctional Class: RThe phylogenetic pattern of COG1778 is -----q--e--huj-------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 11-81 are 38% similar to a (PROTEIN CMP-SIALATE CONSERVED PUTATIVE) protein domain (PD186741) which is seen in YRBI_ECOLI.Residues 87-156 are 38% similar to a (PROTEIN PHOSPHOSERINE PHOSPHATASE HYDROLASE INTERGENIC) protein domain (PD001342) which is seen in O67920_AQUAE.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Jul 25 12:36:42 2008","Fri Jul 25 12:35:02 2008","Fri Jan 5 17:05:45 2001","","Fri Jul 25 12:35:02 2008","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Jul 25 12:35:02 2008","-52% similar to PDB:1J8D Structure Of the metal-free form of the deoxy-D-mannose-octulosonate 8-phosphate phosphatase (YrbI) From Haemophilus Influenzae (HI1679) (E_value = 3.4E_17);-52% similar to PDB:1K1E Structure Of the cobalt-bound form of the deoxy-D-mannose-octulosonate 8-phosphate phosphatase (YrbI) From Haemophilus Influenzae (HI1679) (E_value = 3.4E_17);","","","No significant hits to the Pfam 11.0 database","","34540459","","","","","","1","","","PG0658" "PG0595","709239","708430","810","ATGATTGATCCTGTAGGACTGCCCGATACTTTCGTGCGCATAGTGCTTGTCGGCAGTGGAAATCTGGCTACCCAAACGGCTCTGGCCTTGTCCGAAGCCGCCAGTCCGCCCGTTCAGGTATGGAGCAGGAATGCCGAGCATGCCGAACGGTTGGCTTCCATGCTGCCGGGAGCAACCGCTACCGATCGGACAGAGGAGCTACTCTGCGATGCAGAGCTTTATCTCCTTGCAGTGAGCGACCATGCTCTCGAATCCGTAGCTGCTACCCTTCCGCCCACATCGGGAATATGGGCACATACGGCTGGCAGTATGCCGATGGATACCCTTCGCCCTTATCATGCGCAGATCGGGGTCTTCTATCCTCTTCAGACATTCAGCCGCGAACGTCGTGTGGACTATTCTTCCATACCTATATATATAGAAGGTAACGACGAATCCGTGGTACGACTACTGGAATCCGTCGCTCGTCTTATTAGCAGGAACGTTCTCCGCTGTACATCGGAGCAGCGACTCTATCTGCACTTGGCTGCTGTATTTGCCTGCAATTTCACGAATCATCTCTATGCCTTGAGTGAGCAAATGCTGGCCGCACATGGTCTGCCGCCACGCTCTCTGGCTCCTCTTATCGCAGAGACTGCGGCCAAGGTGCAGGAGATGTCCGCCACCGAAGCTCAGACCGGGCCGGCCAAAAGAGACGACACAAACACTCTGCAAAAACATCTCGGTCTGCTCAACCCATATCCGGATTGGCAGGAGATCTATCGGATACTTAGCGATAGCATTCGGAAGATGTACGGACCGAAAGAACAA","5.60","-6.21","29726","MIDPVGLPDTFVRIVLVGSGNLATQTALALSEAASPPVQVWSRNAEHAERLASMLPGATATDRTEELLCDAELYLLAVSDHALESVAATLPPTSGIWAHTAGSMPMDTLRPYHAQIGVFYPLQTFSRERRVDYSSIPIYIEGNDESVVRLLESVARLISRNVLRCTSEQRLYLHLAAVFACNFTNHLYALSEQMLAAHGLPPRSLAPLIAETAAKVQEMSATEAQTGPAKRDDTNTLQKHLGLLNPYPDWQEIYRILSDSIRKMYGPKEQ","709248 708430","TIGR ID: PG0659","conserved hypothetical protein","Cytoplasm","Two significant hits in gapped BLAST to conserved hypothetical protein; e.g. residues 40-233 are 25% similar to gb|AAD36792.1|AE001812_2 hypothetical protein of Thermotoga maritima, residues 16-241 are 26% similar to emb|CAB40924.1| hypothetical protein of Streptomyces coelicolor A3(2).","
InterPro
IPR011128
Domain
NAD-dependent glycerol-3-phosphate dehydrogenase, N-terminal
PF01210\"[12-149]TNAD_Gly3P_dh_N
noIPR
unintegrated
unintegrated
SSF51735\"[12-166]TSSF51735


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 13:02:42 MDT 2001","","Thu Jun 14 13:02:42 MDT 2001","Thu Jun 14 13:02:42 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:02:42 MDT 2001","Thu Jun 14 13:02:42 MDT 2001","","","Fri Jan 5 17:03:01 2001","Tue Jun 19 16:27:05 MDT 2001","Fri Jan 5 17:03:01 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Jun 14 13:02:12 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Jun 19 16:25:32 MDT 2001","34540460","","","","","","1","","","PG0659" "PG0596","709786","709235","552","ATGAAATCATTTGCAGAGTTAATAGAAAATCGCCGCTCTATCCGACAATTCTCCGAAGAGCAGCTTTTGCCCGAGGACGTGCAGGCTCTGATGACAGCGGCACTGCGCGCTCCGTCCGGCAGGAACAGGCAACAGACCCGGTATATACTGGTGGAAGACCGTGATAAGCTGCAAGTGCTAAGCCTGATGAAGCAGCATGGCTCCCGTTTTCTGGCAGATGCTGCCTTGGCTGTAGTGGTACTGGGATCGCCCATGTTTTCCGAGCGTTGGCACGAGGATGCTGCGATAGCCGCTACCTACATCCAACTGCAGGCGGAGGATCTGGGGCTGGGCAGTTGCTGGTGTCAGGTCTTCGGATCGCTTACACCGAATGGGCAGGAGGCTATTCAGTATGTGCGCAATACGCTGAATATTCCCTATCAGTTGGAAGTCCTGTGCATCATCGCTATCGGACACAAAGCCGAGCACAGGGATCCGCGCCCTGCATCGGAATTGAAGTGGGAGAACGTTTTTATAGGCGAATATCCCGATTGGGAGAGTGTGTCGCATGAT","5.20","-5.93","20895","MKSFAELIENRRSIRQFSEEQLLPEDVQALMTAALRAPSGRNRQQTRYILVEDRDKLQVLSLMKQHGSRFLADAALAVVVLGSPMFSERWHEDAAIAATYIQLQAEDLGLGSCWCQVFGSLTPNGQEAIQYVRNTLNIPYQLEVLCIIAIGHKAEHRDPRPASELKWENVFIGEYPDWESVSHD","709804 709235","TIGR ID: PG0660","NADPH-oxidoreductase","Cytoplasm","Numerous significant hits in gapped BLAST to NADH oxidoreductase protein; e.g. residues 1-158 are 32% similar to gb|AAB88993.1| NAD(P)H-flavin oxidoreductase of Archaeoglobus fulgidus, residues 7-156 are 27% similar to gb|AAD35468.1|AE001718_5 NADH oxidoreductase, putative of Thermotoga maritima, residues 6-160 are 26% similar to gb|AAB84626.1| NADPH-oxidoreductase of Methanothermobacter thermoautotrophicus.","
InterPro
IPR000415
Family
Nitroreductase
PF00881\"[8-152]TNitroreductase
noIPR
unintegrated
unintegrated
G3DSA:3.40.109.10\"[1-167]TG3DSA:3.40.109.10
PIRSF000232\"[2-175]TNADHdh_nitroRD
PTHR23026\"[33-175]TPTHR23026
PTHR23026:SF48\"[33-175]TPTHR23026:SF48
SSF55469\"[1-175]TSSF55469


","BeTs to 5 clades of COG0778COG name: Nitroreductase family proteinsFunctional Class: CThe phylogenetic pattern of COG0778 is AmT--qVcEBRHUJ-------Number of proteins in this genome belonging to this COG is 3","No significant hit to the Blocks database.","Residues 6-158 are 29% similar to a (PROTEIN OXIDOREDUCTASE FLAVOPROTEIN FMN) protein domain (PD001645) which is seen in YM67_ARCFU.","","Thu Jun 14 13:03:44 MDT 2001","","Thu Jun 14 13:03:44 MDT 2001","Thu Jun 14 13:03:44 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:03:44 MDT 2001","Thu Jun 14 13:03:44 MDT 2001","","","Mon Apr 2 18:59:14 MDT 2001","Tue Jun 19 16:25:05 MDT 2001","Fri Jan 5 17:00:12 2001","","Tue Jun 19 16:22:10 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 6-166 are 24% similar to PG0284, NADPH-oxidoreductase/ nitroreductase.Residues 4-166 are 29% similar to PG0662, a possible NADH oxidase.","Tue Jun 19 16:23:17 MDT 2001","Mon Apr 2 18:59:14 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 8 to 152 (E-value = 6e-19) place PG0596 in the Nitroreductase family which is described as Nitroreductase family (PF00881)","Tue Jun 19 16:22:10 MDT 2001","34540461","","","","","","1","","","PG0660" "PG0596.1","709857","710210","354","ATGCCGGTCTTCCTCCTGCAGTACGCCCGATCAAACCCGATGGACTCCACTCATAAAAGGACTCGATCACAAACAAGAAAAAGTCCATTTATGATCCCCAAAAAATGTGGCGCGAGAAAATTTCACTTTTGGAGTCCTTTGAAAAAAATTATTGACAATCCCTCATTTTTTCAGAGGTCTATATCGGTTTTACTCGTCGCCGTTCGATTGTTTTCTTTCCGGCCGGGAAAAGTTTCCCCGACAGCCGACAAAAATAATTTTTCCGGCCGGAAAAGCTCTATCCAAAGCCTTCGGATATGTATCCAAAGCCTTTGTACACATATACGAAAGCTTTGTTTATATATCCGAAACCTT","","","13700","MPVFLLQYARSNPMDSTHKRTRSQTRKSPFMIPKKCGARKFHFWSPLKKIIDNPSFFQRSISVLLVAVRLFSFRPGKVSPTADKNNFSGRKSSIQSLRICIQSLCTHIRKLCLYIRNL","","NO TIGR ID corresponds to this gene.","hypothetical protein","Periplasm, Cytoplasm","No significant hits in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Tue Dec 19 15:46:08 MST 2000","","","","Tue Dec 19 15:46:08 MST 2000","","","","Fri Jan 5 16:54:57 2001","Fri Jan 5 16:54:57 2001","Tue Dec 19 15:46:08 MST 2000","","","yes","Fri Feb 20 15:41:32 MST 1998","PG0596.1 is paralogously related to PG0651.1.","Fri Jan 5 16:55:46 2001","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG0597","710434","711918","1485","ATGCATACAGAGGTGCAGGAATATGGTTTGTCGTTGCGGTGGGTTAGATTTATCTTTGCCGCAAAAGAAATCCTTATAAATATGGTGTACAAAGTTTTTTTGTCGCTCTGCATAGGTTTAGCCCTGAGTGCAAGCGCAGCTCTTCATGCCCAGAAAGCAGTATCCGGACATGCCCCCATCCAAGTAGAAACGCCTGCTCGCTCATCGGGGCAGAAGCACGTTTTGCAGTTAGTAACACCCAAACTGGAAACGGTGCGTATCGGGATCATCGGTCTCGGTATGCGTGGGCCGGGTGCAGTGGAACGATTCTCCAAAATCCCCGGTACGCAGATCGTTGCGCTGTGCGATGTGCTCCCCGAACGTGTGAAAAAAACCCAAGAGATCCTCGTCAAAGCAGGACTACCCGAAGCGGCAGCATACTCCGGCAGTGAGGATGCTTGGAAGAAACTATGCGAACGCGAGGACATCGACCTCGTATATATTGTCACAGACTGGAAAACCCACGCCGAAATGGGCGTATATGCGATGGAGCACGGCAAGCATGCCGCTATCGAAGTGCCGGCAGCCATGACGCTGGAAGAGATATGGAAGCTCATCGACACTTCGGAGCGCACACGTAAACACTGTATCCAACTCGAAAACTGCGTATACGACTTTTTCGAGCTGACCACGCTGAATATGGCTCATCAGGGTGTATTCGGCGAGATCCTGCATGCAGAAGGTGCCTATATCCACAACCTCGAAGACTTCTGGCCCTATTACTGGAACAACTGGCGTCTGGACTACAACCGCAAACATCGTGGCGACGTATATGCCACACATGGTATGGGGCCGGCATGCCAGTTGCTCGACATCCATCGCGGCGACCGCATGAAGACCATCGTAGCCATGGACACAAAAGCTGTGAACGGGCCTGCATACATCAAGAATAAGACCGGAGAGGTGGTGGCCGACTTCCAAAACGGCGACCAGACGACTTCGCTCATCCGCACGGAAAAGGGCAAGACTCTGCTCATCCAGCACAATGTAATGACACCCCGCCCCTATAGCCGCAAGTACCAAGCCGTAGGTACCGACGGATTTGCCGACAAGTATCCTCTGGAGATGTACTGCCTTCGCCCCGCACAGGTGGACTCTGACATTGCACCCGATCATGAAAAGCTCAATGCTCACGGCCCCGTATCGGAGGAGGTGAAGAAGGCTTTGATGGAAAAATACAAACACCCCATCCATCGCGAGCTGGAAGAGACGGCGAAGAAAGTAGGAGGACACGGCGGCATGGATTACATCATGGATTACCGTCTCATCTATTGCCTCCGCAATGGCCTGCCCCTCGATATGGATGTGTACGATCTGGCCGAATGGTGTTGTCTGGCGGAGCTAAGCCGCATCTCCATCGAAAACGGCTCTGCCCCTGTAGCCATCCCCGATTTCACACGTGGCAATTGGGATAAAGTAAAGGGCTATCGACACGCAATGGCAGAG","6.90","-1.38","55818","MHTEVQEYGLSLRWVRFIFAAKEILINMVYKVFLSLCIGLALSASAALHAQKAVSGHAPIQVETPARSSGQKHVLQLVTPKLETVRIGIIGLGMRGPGAVERFSKIPGTQIVALCDVLPERVKKTQEILVKAGLPEAAAYSGSEDAWKKLCEREDIDLVYIVTDWKTHAEMGVYAMEHGKHAAIEVPAAMTLEEIWKLIDTSERTRKHCIQLENCVYDFFELTTLNMAHQGVFGEILHAEGAYIHNLEDFWPYYWNNWRLDYNRKHRGDVYATHGMGPACQLLDIHRGDRMKTIVAMDTKAVNGPAYIKNKTGEVVADFQNGDQTTSLIRTEKGKTLLIQHNVMTPRPYSRKYQAVGTDGFADKYPLEMYCLRPAQVDSDIAPDHEKLNAHGPVSEEVKKALMEKYKHPIHRELEETAKKVGGHGGMDYIMDYRLIYCLRNGLPLDMDVYDLAEWCCLAELSRISIENGSAPVAIPDFTRGNWDKVKGYRHAMAE","710434 711918","Many hits in gapped BLAST to center portion of sequence.TIGR ID: PG0664","oxidoreductase","Cytoplasm, Periplasm, Inner membrane","One significant hits in gapped BLAST to most of the sequence; e.g. residues 63-483 are 36% similar to emb|CAB59586.1| probable oxidoreductase of Streptomyces coelicolor A3(2), residues 84-277 are 26% similar to emb|CAC14937.1| putative oxidoreductase of Streptomyces coelicolor, residues 82-334 are 24% similar to dbj|BAB04967.1| NADH-dependent dyhydrogenase of Bacillus halodurans.This sequence is similar to BT4243.","
InterPro
IPR000683
Domain
Oxidoreductase, N-terminal
PF01408\"[85-213]TGFO_IDH_MocA
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.720\"[83-248]TG3DSA:3.40.50.720
PTHR22604\"[145-243]T\"[261-491]TPTHR22604
PTHR22604:SF2\"[145-243]T\"[261-491]TPTHR22604:SF2
SSF51735\"[84-267]TSSF51735


","BeTs to 8 clades of COG0673COG name: Predicted dehydrogenases and related proteinsFunctional Class: RThe phylogenetic pattern of COG0673 is --tKYqVCEB--uj-------Number of proteins in this genome belonging to this COG is 2","***** PF01408 (Oxidoreductase family) with a combined E-value of 4.4e-07. PF01408 156-191","Residues 85-247 are 27% similar to a (PROTEIN OXIDOREDUCTASE INTERGENIC REGION) protein domain (PD001155) which is seen in CBAC_ALCSB.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Mon Jan 5 11:27:12 2004","Mon Jan 8 16:23:56 2001","Mon Jan 5 11:27:12 2004","Mon Jan 8 16:23:56 2001","Mon Apr 30 17:15:21 MDT 2001","Mon Apr 30 17:15:21 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Apr 30 17:15:21 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 85 to 213 (E-value = 6.7e-11) place PG0597 in the GFO_IDH_MocA family which is described as Oxidoreductase family, NAD-binding Rossmann fold (PF01408)","Mon Apr 30 17:15:21 MDT 2001","34540464","","","","","","1","","","PG0664" "PG0598","711968","715303","3336","TTGACTGCCGCAAGTGTCGTTTTCGGTGCAGAGGCACAGGTCACAGAGTCGGGGCTTCCATATTGGAAGGATATTCGTACGGTAAGCGTAAACAAAGAACCGGCGCGTTCGTCCTTTATGACCTATGCCGACCGAAGCGAAGCTCTCACCGGCAAGTATGAGAAGAGTTCGTACTACCGTCTTCTGAACGGCACGTGGCGATTCTTTTATGCCGAGAGCGAGGCACATCTGCCTGCCGGCATAACGGATAGCTCGGCAAATACAAAGGGATGGCACGACATCCAAGTCCCCGGCAACTGGGAGATACAAGGGCACGGTGTGGCCATCTATACCAATCACGGATACGAGTTTCAGCCTCGCAATCCGCAGCCGCCCAAACTGCCGGAAGCCAACCCCGTAGGTGTGTATCGGCGCGAGATAGAAGTACCCACGGACTGGATGGAGCGCGATATCTACCTCCATATAGCCGGAGCCAAGTCCGGACTCTATGTCTATATCAACGGACACGAAGCGGGCTACAGCGAAGACTCCAAGAATCCGGCCGAATTCCTCATCAATCCCTATGTCCATGCCGGAAAAAACACGCTCACGCTCAAGGTCTATCGTTGGAGTACCGGCTCGTATCTGGAATGTCAGGACTTCTGGCGCATCAGTGGGATCGAACGCGATGTATTCCTCTTTGCACAACCCAAGGCGGCAGTGAAGGATTTCAGCATCAAATCCACACTCGATGATAGCTACCGCAATGGTATATTCTCCCTGAAAGCCGACTTACGCAACCGCCGTGGCGAAGCCTCCGAGCTATCTCTGACATACGAATTGCTCGATGCCGAAGGAAAGACCATCGCCACCGAAACCCGTTCGACCCTCATAGCTGCCGGCGGAGAGCGTACCCTCTCTTTCGAAGCACAGCCGGGTACGGTACATACATGGACGTCGGAGCATCCCTATCTCTATAAGCTCTTGATGACGGTACGAGAGAAAGGGAAAGTCACCGAGGTAATACCGTCCCGTGTGGGTTTCCGCAGGATCGAAATCAAACCGATAGAGGAAAAAGCTGCCAACGGTATGCCCTACGTATGCTTCTTTGTCAATGGACAGCCCATCAAGCTGAAAGGGGTGAATATGCACGAACATAATCCCGCCACCGGTCATTACGTGCCGGAAGAGCTGATGCGTCGGGATTTGGAGCTGATGAAGCAGCACAATCTGAATGCCGTCCGGCTGGCACACTACCCGCAAGATCGCCGTTTCTACGAGCTATGCGACGAATACGGACTCTACGTGTACGACGAGGCCAATATCGAAAGTCACGGCATGTACTACAACCTGCGCCGTGGGGGTACCTTGGGCAATAATCCGGAGTGGCTGAAGCCTCATATGGATCGTATAGCGAATATGTTCGAACGCAACAAAAACCATCCGTGCGTTACGATCTGGTCGCTCGGCAATGAAGCAGGCAACGGGTACAACTTCTATCAGGCCTATCTTTGGCTGAAAGAGGCCGATCGCGATCTGATGGCGCGCCCGGTGAACTACGAACGTGCCCAATGGGAGTGGAATACGGATATGTATGTACCCCAATATCCCGATGCGAAATGGTTGGAAGGTATCGGACGGGCCGGTAGCGACCGCCCTGTGATCCCTTCGGAATACGCTCACGCCATGGGCAATTCGACCGGCAACCTATGGGGGCAGTGGCAGGCTATCTACAAGTACCCCAACCTGCAAGGCGGCTTCATCTGGGACTGGGTGGATCAGGGTATCCTCCGTACAGACGATAAAGGAAAGTCCTATTGGGCTTATGGAGGAGACTTCGGAGTGGATGCACCGAGTGACGGCAACTTCCTTTGCAACGGACTGGTCAATCCCGACCGCACGCCTCACCCTGCCATGCAGGAGGTGAAGTATGTGCATCAAAACGTCGGCTTCGAAGCAGTGGATGCCGCCAAGGGACATTTCCGTATCACGAATCGGTTCTACTTCACCAACCTCAAGAAATACCGCCTGCGCTATACGGTTTCGGCTAATGGCAAAGCATTGCAAAGCAAGGTCATCGGCTTAGATATCGATCCTCAGACTTCATCGGACATTATTGTACCCGTAGACGGGCTGAGGCCGACTGCCGGTATGGAATACTTCGTTGACTTCAGCGTACAGACTCTACAGGCAGAGCCGCTGATTCCTATAGGGTATGAGATTGCTCACGATCAATTCCGACTTCCGATCGATGCAGAGAGAACTGCCTACCGTGCTACAGGCCCTACATTGCACACGAGTACGGAAGGAGATGAATTGAAGGTCGTTTCGTCGAAAGTCGATTTCGTTTTCAACAAAAAGAGCGGATTGGTTACCTCTTATCGGGTGGACGGTCGGGAGTTTTTCAAAGACGGATTCGGCATACAGCCCAATTTCTGGCGTGCACCCACCGATAACGACTACGGCAATGGTGCTCCAAGACGCTTGCAGATATGGAAGGAATCGAGCCGTGACTTCCAAGTAGTCGAAGCAGGATTGTCCAACGAAGGGAATACCGTCCTACTCAAAGCTACTTATCTGCTTGCCGCCGGCAACCTCTACCGCTTGACCTATAAAATATATCCCGATGGTGTGGTGAATGTGAAGGTGCAATTCTCTTCGACAGATATGGAGACCGACGAATACGAATGGTCCGAAGCTGCCCGAACCGCTACATTCTCCCCCGGCAGAGAAGCTCTGCGCAAGGAAGCTTCTATCCTCGAAGTGCCTCGTATAGGTGTACGCTTCCGCCTTCCTGCGGAGATGAATGAGGTACGATACTTCGGAAGAGGGCCGGATGAGAACTATATCGACCGCAACTACGGGGCGACTGTCGGTCTGTACACCACTGCTGCCGATAAGATGTACTACAACTATGTGCGTCCGCAAGAGAACGGGCATCGTACCGATACGCGTTGGCTGATGCTGCACGGACGAGGCTTGGGCTTGGGCATAGTAGCCGACGAAACGATCGGCTTCAATGCTCTTCGACAAGCTGTCGAGGACTTCGACTCAGAAGAAGCCAAGCACAGACCCTACCAGTGGAACAACTATTCACAGACCGAGATACAAAACCGAGATGAGAGCAAAGCTCGCAACGTCCTCCGTCGGCAGCATCATGTCAATGATGTGCCTGTGCGCGACTTCGTAGAGGTGTGCGTGGATATGAAACAACAAGGAGTAGGAGGATACGATAGCTGGTCGGCTCTTCCCGAACCTTGGCACCGCCTACCGTCCAATCGGGAATACAGTTGGGGCTTTACCCTTCTTCCGGTACGATCAGTCGGCCAAATGGCCACTGCCACCCGATACGCCTAC","6.60","-7.17","126969","LTAASVVFGAEAQVTESGLPYWKDIRTVSVNKEPARSSFMTYADRSEALTGKYEKSSYYRLLNGTWRFFYAESEAHLPAGITDSSANTKGWHDIQVPGNWEIQGHGVAIYTNHGYEFQPRNPQPPKLPEANPVGVYRREIEVPTDWMERDIYLHIAGAKSGLYVYINGHEAGYSEDSKNPAEFLINPYVHAGKNTLTLKVYRWSTGSYLECQDFWRISGIERDVFLFAQPKAAVKDFSIKSTLDDSYRNGIFSLKADLRNRRGEASELSLTYELLDAEGKTIATETRSTLIAAGGERTLSFEAQPGTVHTWTSEHPYLYKLLMTVREKGKVTEVIPSRVGFRRIEIKPIEEKAANGMPYVCFFVNGQPIKLKGVNMHEHNPATGHYVPEELMRRDLELMKQHNLNAVRLAHYPQDRRFYELCDEYGLYVYDEANIESHGMYYNLRRGGTLGNNPEWLKPHMDRIANMFERNKNHPCVTIWSLGNEAGNGYNFYQAYLWLKEADRDLMARPVNYERAQWEWNTDMYVPQYPDAKWLEGIGRAGSDRPVIPSEYAHAMGNSTGNLWGQWQAIYKYPNLQGGFIWDWVDQGILRTDDKGKSYWAYGGDFGVDAPSDGNFLCNGLVNPDRTPHPAMQEVKYVHQNVGFEAVDAAKGHFRITNRFYFTNLKKYRLRYTVSANGKALQSKVIGLDIDPQTSSDIIVPVDGLRPTAGMEYFVDFSVQTLQAEPLIPIGYEIAHDQFRLPIDAERTAYRATGPTLHTSTEGDELKVVSSKVDFVFNKKSGLVTSYRVDGREFFKDGFGIQPNFWRAPTDNDYGNGAPRRLQIWKESSRDFQVVEAGLSNEGNTVLLKATYLLAAGNLYRLTYKIYPDGVVNVKVQFSSTDMETDEYEWSEAARTATFSPGREALRKEASILEVPRIGVRFRLPAEMNEVRYFGRGPDENYIDRNYGATVGLYTTAADKMYYNYVRPQENGHRTDTRWLMLHGRGLGLGIVADETIGFNALRQAVEDFDSEEAKHRPYQWNNYSQTEIQNRDESKARNVLRRQHHVNDVPVRDFVEVCVDMKQQGVGGYDSWSALPEPWHRLPSNREYSWGFTLLPVRSVGQMATATRYAY","711935 715303","TIGR ID: PG0665","beta-galactosidase","Outer membrane, Cytoplasm","Numerous hits in gapped BLAST to beta-galactosidase sequences, e.g. residues 19-1083 are 37% similar to the enzyme from Thermatoga maritima (AE001776). Residues 17-1098 are 35% similar to BGAL_BACME (AJ000733) of Bacillus megaterium.This sequence is similar to BT4241.","
InterPro
IPR004199
Domain
Glycoside hydrolase, family 42, domain 5
PF02929\"[767-1096]TBgal_small_N
InterPro
IPR006101
Family
Glycoside hydrolase, family 2
PR00132\"[158-173]T\"[364-378]T\"[395-413]T\"[471-486]T\"[545-560]TGLHYDRLASE2
InterPro
IPR006102
Domain
Glycoside hydrolase family 2, immunoglobulin-like beta-sandwich
PF00703\"[232-342]TGlyco_hydro_2
InterPro
IPR006103
Domain
Glycoside hydrolase family 2, TIM barrel
PF02836\"[362-644]TGlyco_hydro_2_C
InterPro
IPR006104
Domain
Glycoside hydrolase family 2, carbohydrate-binding
PF02837\"[56-230]TGlyco_hydro_2_N
InterPro
IPR013781
Domain
Glycoside hydrolase, catalytic core
G3DSA:3.20.20.80\"[362-639]Tno description
InterPro
IPR013812
Domain
Glycoside hydrolase, families 2 and 20, immunoglobulin-like beta-sandwich
G3DSA:2.60.40.320\"[231-342]T\"[643-749]Tno description
InterPro
IPR014718
Domain
Glycoside hydrolase-type carbohydrate-binding, subgroup
G3DSA:2.70.98.10\"[750-1095]Tno description
noIPR
unintegrated
unintegrated
G3DSA:2.60.120.260\"[7-230]Tno description
PTHR10066\"[371-988]TGLYCOSIDE HYDROLASE
PTHR10066:SF8\"[371-988]TBETA-GALACTOSIDASE


","No hit to the COGs database.","***** IPB001649 (Glycosyl hydrolases family 2) with a combined E-value of 6.7e-87. IPB001649A 60-71 IPB001649B 110-125 IPB001649C 210-239 IPB001649D 307-321 IPB001649E 350-384 IPB001649F 395-432 IPB001649G 470-485 IPB001649I 545-559 IPB001649J 576-589 IPB001649K 603-621","Residues 340-554 are 44% similar to a (BETA-GALACTOSIDASE HYDROLASE GLYCOSIDASE LACTASE) protein domain (PD002163) which is seen in O85250_THENE.Residues 766-1083 are 30% similar to a (BETA-GALACTOSIDASE LACTASE HYDROLASE GLYCOSIDASE SMALL) protein domain (PD003217) which is seen in O85250_THENE.Residues 77-245 are 44% similar to a (BETA-GALACTOSIDASE HYDROLASE GLYCOSIDASE LACTASE) protein domain (PD002797) which is seen in BGAL_THEMA.Residues 570-642 are 65% similar to a (BETA-GALACTOSIDASE LACTASE HYDROLASE) protein domain (PD003223) which is seen in BGAL_THEMA.","","Thu Jun 14 13:04:35 MDT 2001","","Thu Jun 14 13:04:35 MDT 2001","Thu Jun 14 13:04:35 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:04:35 MDT 2001","Thu Jun 14 13:04:35 MDT 2001","","","Tue Dec 19 09:44:32 MST 2000","Mon Jan 5 11:21:34 2004","Tue Dec 19 09:38:03 MST 2000","Tue Jun 19 16:16:10 MDT 2001","Tue Jun 19 16:16:10 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG0598 shares 30% identity with PG0799, a predicted beta-galactosidase. Residues 201-504 are 22% similar to residues 196-477 of PG0028, a predicted beta-mannosidase.","Tue Jun 19 16:17:30 MDT 2001","Mon Jan 5 11:21:34 2004","-45% similar to PDB:1BGL BETA-GALACTOSIDASE (CHAINS A-H) (E_value = 9.1E_132);-45% similar to PDB:1BGM BETA-GALACTOSIDASE (CHAINS I-P) (E_value = 9.1E_132);-45% similar to PDB:1DP0 E. COLI BETA-GALACTOSIDASE AT 1.7 ANGSTROM (E_value = 9.1E_132);-45% similar to PDB:1F49 E. COLI (LAC Z) BETA-GALACTOSIDASE (NCS CONSTRAINED MONOMER-MONOCLINIC) (E_value = 9.1E_132);-45% similar to PDB:1F4A E. COLI (LACZ) BETA-GALACTOSIDASE (NCS CONSTRAINED MONOMER-ORTHORHOMBIC) (E_value = 9.1E_132);","","","Residues 56 to 230 (E-value = 9.4e-50) place PG0598 in the Glyco_hydro_2_N family which is described as Glycosyl hydrolases family 2, sugar binding domain (PF02837)Residues 232 to 342 (E-value = 2.8e-14) place PG0598 in the Glyco_hydro_2 family which is described as Glycosyl hydrolases family 2, immunoglobulin-like beta-sandwich domain (PF00703)Residues 362 to 644 (E-value = 1.4e-107) place PG0598 in the Glyco_hydro_2_C family which is described as Glycosyl hydrolases family 2, TIM barrel domain (PF02836)Residues 752 to 955 (E-value = 1.3e-27) place PG0598 in the Bgal_small_N family which is described as Beta galactosidase small chain, N terminal domain (PF02929)Residues 965 to 1095 (E-value = 4.5e-14) place PG0598 in the Bgal_small_C family which is described as Beta galactosidase small chain, C terminal domain (PF02930)","Mon Jan 5 11:21:34 2004","34540465","","","","","","1","","","PG0665" "PG0599","715389","715892","504","ATGAAGCAACTGAATGAAATAGTAGCACATTTCCACACCGAGGGAAGCGTGGCAGAGATCGCACCCTTAGGTGCCGGTCTTATCAATGACACTTACAAGGTGGCAACAGCCGAAGCCGATGCACCTGACTACGTTTTGCAACGAATCAATCACACCATATTCAAAGATGTGGAAATGCTACAGGCCAATATTACGGCTGTAACGGCACACATCCGGCGCAAGCTGACCGAATCGGGAGCCGATGACATCGAACGGAAAGTGCTCACCCTCGTCACAAGCGATAGGGACAAGACATATTATTACGATGGAGAAAACTATTGGAGGATGATGGTTTTTATTCCCCGAGCACAAACCTTCGAGGCGGTAACACCCGAATATTCACGGTATGCGGGACAAGCATTCGGCAGCTTCCAAGCCATGCTGTCGGACTTACCGGACGAACTGGGCGAAACCATTCCCGACTTTCATATATGGAGTTCAGGCTCGGCCAATTACACGATGCCT","4.70","-8.80","18902","MKQLNEIVAHFHTEGSVAEIAPLGAGLINDTYKVATAEADAPDYVLQRINHTIFKDVEMLQANITAVTAHIRRKLTESGADDIERKVLTLVTSDRDKTYYYDGENYWRMMVFIPRAQTFEAVTPEYSRYAGQAFGSFQAMLSDLPDELGETIPDFHIWSSGSANYTMP","715389 715892 [Shorter 791 187 99]","NO TIGR ID corresponds to this gene.","conserved hypothetical protein","Cytoplasm","Two significant hits in gapped BLAST to conserved hypothetical protein; e.g. residues 4-156 are 61% similar to gb|AAF72522.1|AF248951_3 MdsC protein of Prevotella sp. RS2, residues 7-156 are 32% similar to dbj|BAA17692.1| hypothetical protein of Synechocystis sp.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 7-156 are 32% similar to a (HYPOTHETICAL 42.7 KD PROTEIN) protein domain (PD137281) which is seen in P73647_SYNY3.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Jan 5 16:47:24 2001","Fri Jan 5 16:47:24 2001","Fri Jan 5 16:47:24 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG0600","715706","716473","768","TTGGAGGATGATGGTTTTTATTCCCCGAGCACAAACCTTCGAGGCGGTAACACCCGAATATTCACGGTATGCGGGACAAGCATTCGGCAGCTTCCAAGCCATGCTGTCGGACTTACCGGACGAACTGGGCGAAACCATTCCCGACTTTCATATATGGAGTTCAGGCTCGGCCAATTACACGATGCCTTAAAGACTGATCCGGTGGGACGCGCTGAGGAAGTTCGTTACTACATCGATGAAATAGAAAAGCGAGCAGAGGAAATGTGCAAGGCGGAACGTCTGCATCGTGAGGGAAAACTGCCCAAACGGGTATGCCACTGCGACACGAAGGTAAACAACATGCTTTTCGACGAAGACGGACATGTACTTTGCGTCATCGACCTCGACACCGTGATGCCGAACTTTATTTTCTCCGACTATGGCGACTTTCTCCGTACCGGAGCCAACACCGGCGAAGAGGACGACAAAGACCTTGACCATGTAAACTTCGACATGGAAATCTTCAAGGCCTTTACCGAAGGATACCTGAAGGGGGCAAGCTCTTTCCTCACCGACGTCGAAATAGAGAATCTCCCGTACGCCGCAGCACTATTTCCCTATATGCAGTGTGTGCGCTTCCTGACGGACTACATCAATGGCGATACGTATTATAAGATCAAGTACCCCGAACACAATCTGGTACGCACTCGTGCACAATTCAGGCTGCTACAGAGTGTAGAGGACTGCATGCTGCAGATGCAAGCTTTTATCGACCAATGTCTTAGGTAT","5.10","-9.44","29568","LEDDGFYSPSTNLRGGNTRIFTVCGTSIRQLPSHAVGLTGRTGRNHSRLSYMEFRLGQLHDALKTDPVGRAEEVRYYIDEIEKRAEEMCKAERLHREGKLPKRVCHCDTKVNNMLFDEDGHVLCVIDLDTVMPNFIFSDYGDFLRTGANTGEEDDKDLDHVNFDMEIFKAFTEGYLKGASSFLTDVEIENLPYAAALFPYMQCVRFLTDYINGDTYYKIKYPEHNLVRTRAQFRLLQSVEDCMLQMQAFIDQCLRY","715706 716473 [Bad Olap 790 187 0]","TIGR ID: PG0666","conserved hypothetical protein","Cytoplasm","Residues 25-250 are 59% similar using gapped BLAST to residues 133-385 of the MdsC protein of Prevotella sp. RS2, (AAF72522) another member of the Bacteroidaceae. Residues 43-246 are 37% similar to a segment, residues 166-371, of a hypothethitical protein in Synechocystis sp. (S77134).","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 43-246 are 37% similar to a (HYPOTHETICAL 42.7 KD PROTEIN) protein domain (PD137281) which is seen in P73647_SYNY3.","","","","","","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","","","","","Thu Dec 14 12:02:31 MST 2000","Wed Dec 13 18:32:32 MST 2000","Wed Dec 13 18:32:32 MST 2000","","Thu Jun 14 13:05:19 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Wed Dec 13 18:32:32 MST 2000","Thu Jun 14 13:05:19 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Jun 14 13:05:19 MDT 2001","","","","","","","1","","","PG0666" "PG0600.1","717138","716872","267","ATGAACGTTAAGCACAGTACAGGGCTATCGCATTTGAATAGTTGTACTGTATCCTTGGTCTCTTTCTTCTCTCTAACACATTTATTCGTGCTTATTTTGGACGGAGCACTATCAGGCTTATATGTGTGTTTATTGTTCCATCCATCGGAGAGGATATACTTATCACCAGTCTCTTCTCCACAGCATGAGACCTTTGAAAAACGGGTGATTTATAAAGGGTTGTTTTCCAGTTCGTACCCCCCTTCTCGTCCGCACACTACAAGGGAA","","","9993","MNVKHSTGLSHLNSCTVSLVSFFSLTHLFVLILDGALSGLYVCLLFHPSERIYLSPVSSPQHETFEKRVIYKGLFSSSYPPSRPHTTRE","","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No significant hits.","
noIPR
unintegrated
unintegrated
signalp\"[1-38]?signal-peptide
tmhmm\"[21-41]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Thu Dec 14 15:58:17 MST 2000","Thu Dec 14 15:58:17 MST 2000","Thu Dec 14 15:58:17 MST 2000","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Thu Dec 14 15:58:17 MST 2000","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG0601","717592","719862","2271","ATGCGGACAAAAACTATCTTTTTTGCGATTATCTCTTTTATTGCTCTATTGTCGTCTTCTCTGTCGGCTCAGAGCAAAGCCGTTTTAACCGGTAGTGTGTCGGATGCCGAAACCGGAGAGCCTCTTGCCGGTGCTCGAATCGAAGTCAAACACACCAACATAGTAGCCGGTGCCGATGCCGGCGGACATTTCGAGATCAAGAACCTGCCGGCAGGGCAGCATACTATTATATGTTCGTTGGGGGGGTATGGACAGAAAGAGGAGGTGGTTGCCATCGAAGCCGGACAGACCAAAACGATCTCTTTTGCATTGCGACTGCGAACGAACAACTTGGAGGAAGTCGTCGTTACCGGTACCGGTACACGTTACCGCTTGGTCGATGCTCCTGTGGCAACGGAAGTCCTTACCGCTAAGGACATAGCCTCTTTCTCGGCTCCTACTTCCGAGGCCTTATTGCAGGGGCTGAGTCCGTCTTTTGACTTCGGCCCCAATCTGATGGGCTCTTTCATGCAGCTGAACGGCCTTAGCAGTAAGTATATCCTCATCCTTATCGATGGTAAGCGTGTGTACGGCGATGTAGGCGGTCAGGCCGATTTGAGTCGTATTTCTCCTGATCAGATCGAACGGATCGAACTGGTGAAAGGTGCTTCGAGTTCGCTCTACGGATCCGATGCCATCGCCGGGGTAATCAATGTGATCACAAAAAAGAATACGAATCGACTGAGTGCATATACGTCACATCGCATATCGAAGTACAACGATCGGCAAACCAATACTTCGCTCGATATAAACATCGGTAAGTTCAGTAGCAATACCAACTATTTCTTCTACCATACGGATGGCTGGCAGAATAGTCCGTTCGAAATAAAAAAGAAAAAAGGATCCGGCGAACCGGTCTTGGAGGAAACGTATAAGAAAACTTTTCGTGCACAGGAAAATCAGGGTGTAAGCCAATCGCTTTCCTATTATGCAACTAACAATCTTAGCTTCAGCGGAAATGTGCAGTACAATAAACGTCAGATCTTCACTCCGACTTTTTCCGAAAAGAAGGCCTATGACATGGATTATCGTGCTTTGACGGCTTCACTCGGTACGAACTATCTTTTCCCCAATGGTCTGCATACGCTTTCTTTCGATGCCGTCTACGATCGCTTCCGTTTCGGATATTTGTATCATGACAAGGACAGCAGTGAGAGCCTGATCAACAACCAAGGTCAGACCGAGCAACCCACATTCTTTCCGGGTCAGCTACGCAATAAAAACGATCAGATCCGATACACGGCAGAGGCTCGCGGTGTATTTACACTGCCTTATGCGCAGAAACTGACCGGCGGTTTGGAGTATTTCCGTGAGGAATTGATCTCTCCCTATAATTTGATTACCGACAAGGCAGATGCTTCCACGCTCTCTGCTTATGTACAAGATGAATGGAAACCGCTCGATTGGTTCAATATGACAGCCGGTTTCCGTCTGGTACACCATCAGGAGTTCGGTACACGAATGACGCCTAAGGTATCCATACTCGCCAAGTATGGGCCGCTGAACTTCCGCGCTACGTATGCTAACGGCTATAAGACTCCCACGCTGAAAGAGCTTTTTGCACGGAACGAACTCACCACTATGGGTTCGCACAATCTCTATCTCGGCAATGCGGATCTTAAGCCACAGATGTCGGATTATTATGCTTTGGGCTTGGAGTACAATCAAGGCCCTATCTCGTTCAGTGCAACGGTTTATGACAATGAACTTCGCAATCTGATCTCCTTTATGGATATACCGACCTCACCCGAGCACGAAGCTCAGGGAATCAAGAAAACCAAGCAGTATGCCAACATAGGAAAAGCTCGCAGCCGCGGCCTTGATGTCCTATGTGATGCCTCTATCGGTTGGGGTATCAAGTTAGGAGCCGGATACAGCCTCGTGGAAGCTAAGAATCTCCAGACGGATGAGTGGCTGGAAGGAGCTGCACGTCATCGTGCCAATGTGCACGCCGATTGGGTTCACTACTGGGGTCAGTATAGACTTGGCGTGAGCCTTTTCGGCCGTATTCAGAGCGAGCGTTACTACAAAGACGGCAATGCTCCGGACTATACCTTGTGGCGACTCGCCACATCGCATCGTTTCGCTCATTTCCGCCACATCATCCTGGATGGAACGCTCGGTATAGACAACCTGTTTGACTACGTGGATGATCGTCCTATGGGTGTCAATTATGCTACCGTAACGCCGGGACGTACTTTCTTTGCTCAAATAGCGATTCGATTCAACAAC","8.90","7.05","84511","MRTKTIFFAIISFIALLSSSLSAQSKAVLTGSVSDAETGEPLAGARIEVKHTNIVAGADAGGHFEIKNLPAGQHTIICSLGGYGQKEEVVAIEAGQTKTISFALRLRTNNLEEVVVTGTGTRYRLVDAPVATEVLTAKDIASFSAPTSEALLQGLSPSFDFGPNLMGSFMQLNGLSSKYILILIDGKRVYGDVGGQADLSRISPDQIERIELVKGASSSLYGSDAIAGVINVITKKNTNRLSAYTSHRISKYNDRQTNTSLDINIGKFSSNTNYFFYHTDGWQNSPFEIKKKKGSGEPVLEETYKKTFRAQENQGVSQSLSYYATNNLSFSGNVQYNKRQIFTPTFSEKKAYDMDYRALTASLGTNYLFPNGLHTLSFDAVYDRFRFGYLYHDKDSSESLINNQGQTEQPTFFPGQLRNKNDQIRYTAEARGVFTLPYAQKLTGGLEYFREELISPYNLITDKADASTLSAYVQDEWKPLDWFNMTAGFRLVHHQEFGTRMTPKVSILAKYGPLNFRATYANGYKTPTLKELFARNELTTMGSHNLYLGNADLKPQMSDYYALGLEYNQGPISFSATVYDNELRNLISFMDIPTSPEHEAQGIKKTKQYANIGKARSRGLDVLCDASIGWGIKLGAGYSLVEAKNLQTDEWLEGAARHRANVHADWVHYWGQYRLGVSLFGRIQSERYYKDGNAPDYTLWRLATSHRFAHFRHIILDGTLGIDNLFDYVDDRPMGVNYATVTPGRTFFAQIAIRFNN","717592 719862","See PG1242.Dashper et al. (2000) report the proximity of the ihtB to this gene.TIGR ID: PG0668","tonB-linked outer membrane receptor PG13","Outer membrane, Extracellular","PG0601 is identical to the previously sequenced p.gingivalis (strain W50) AF237558 in GenBANK. Significant similarities using gapped BLAST include: 29% similarity to gb|AAD40727.1|AF048749_23, putative TonB-dependent outer membrane receptor protein in B.fragilis, 24% similarity to gb|AAA98536 (U13950) ferric enterobactin receptor in Bordetella pertussis, and residues 402-755 are 27% similar to gb|AAG05310.1|AE004618 (AE004618) probable TonB-dependent receptor in P. aeruginosa.","
InterPro
IPR000531
Domain
TonB-dependent receptor
PF00593\"[502-755]TTonB_dep_Rec
InterPro
IPR008969
Domain
Carboxypeptidase regulatory region
SSF49464\"[28-104]TCarboxypepD_reg
InterPro
IPR012910
Domain
TonB-dependent receptor, plug
PF07715\"[124-229]TPlug
noIPR
unintegrated
unintegrated
G3DSA:2.170.130.10\"[104-234]TG3DSA:2.170.130.10
G3DSA:2.40.170.20\"[302-755]TG3DSA:2.40.170.20
SSF56935\"[113-755]TSSF56935


","BeTs to 3 clades of COG1629COG name: Outer membrane receptor proteins, mostly Fe transportFunctional Class: PThe phylogenetic pattern of COG1629 is -----q-CE--HUJ-------Number of proteins in this genome belonging to this COG is 8","No significant hit to the Blocks database.","Residues 170-236 are 53% similar to a (RECEPTOR PROTEIN OUTER MEMBRANE PRECURSOR SIGNAL TONB) protein domain (PD000492) which is seen in CIRA_ECOLI.Residues 470-755 are 24% similar to a (PROTEIN RECEPTOR OUTER MEMBRANE PRECURSOR SIGNAL TONB) protein domain (PD000484) which is seen in PFEA_PSEAE.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Sat Jun 2 15:53:05 MDT 2001","Mon Apr 30 17:31:17 MDT 2001","Tue Apr 3 10:39:06 MDT 2001","Fri Dec 8 10:15:05 MST 2000","","Mon Feb 12 13:44:47 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 111-755 are 26% similar to PG1358, a predicted ton-B dependent receptor HmuR (or HemR).Residues 4-651 are 25% similar to PG0637, ton-B linked outer membrane receptor.Residues 1-527 are 26% similar to PG1752, ton-B linked outer membrane receptor.Shorter segments show similarity to:PG0170, tonB-dependent outer membrane receptor,PG0582, ton-B linked receptor.","Tue Apr 3 10:24:20 MDT 2001","Mon Feb 12 13:44:47 MST 2001","-40% similar to PDB:1NQE OUTER MEMBRANE COBALAMIN TRANSPORTER (BTUB) FROM E. COLI (E_value = 1.9E_21);-40% similar to PDB:1NQG OUTER MEMBRANE COBALAMIN TRANSPORTER (BTUB) FROM E. COLI, WITH BOUND CALCIUM (E_value = 1.9E_21);-40% similar to PDB:1NQH OUTER MEMBRANE COBALAMIN TRANSPORTER (BTUB) FROM E. COLI, WITH BOUND CALCIUM AND CYANOCOBALAMIN (VITAMIN B12) SUBSTRATE (E_value = 1.9E_21);-40% similar to PDB:1UJW Structure of the complex between BtuB and Colicin E3 Receptor binding domain (E_value = 1.9E_21);-40% similar to PDB:2GSK Structure of the BtuB:TonB Complex (E_value = 1.9E_21);","","","Residues 126 to 755 (E-value = 2.7e-54) place PG0601 in the TonB_dep_Rec family which is described as TonB dependent receptor (PF00593)","Wed Mar 14 08:43:01 MST 2001","34540466","Thu Dec 14 15:53:25 MST 2000","Ross,B., Barr,I., Patterson,M., Agius,C., Rothel,L., Margetts,M.,Hocking,D. and Webb,E., P. gingivalis polypeptides and nucleic acids. Patent: Australia (AU 98/01023)-PCT 10-DEC-1998. CSL Ltd, 45 Poplar Road, R&D Parkville, Victoria Australia.","Dashper SG, Hendtlass A, Slakeski N, Jackson C, Cross KJ,Brownfield L, Hamilton R, Barr I, Reynolds EC. Characterization of a novel outer membrane hemin-binding protein of Porphyromonas gingivalis. J Bacteriol. 2000 Nov;182(22):6456-62. PMID: 11053391 ","Tue Apr 3 10:33:08 MDT 2001","Sat Jun 2 15:53:05 MDT 2001","1","","","PG0668" "PG0602","719894","720772","879","ATGAAAAAACTGATTTTAGCGACTTTGGGACTTATGGCCATTGCCATGCTCTCATGTTCAAGCAACAACAAGGATTTGGAGAACAAAGGGGAGGCTACTCTTTTGGTAACGTTTGGTAGCTCCTATAAAGCTCCACGCGAAACCTATGCGAAGATTGAGAAGACTTTTGCCGCAGCTTATCCCGATCAAAGGATAAGCTGGACATACACGTCTTCTATTATCCGAAAGAAACTGGCTCAGCAGGGTATTTATATCGATGCTCCGGATGAGGCTTTGGAGAAATTGGCTCGTCTGGGTTATAAGAAGATCAATGTACAGAGTCTTCATGTGATTCCCGGCCGAGAATATGATGAGATGATCGACTTTGTCAATAAGTTTAAGGCAGCACATAGTGATATTACTGTGAAGGTAGGGGCTCCGCTTTTCGATACCGATGAAGATATGCGCGAGGTGGCAGAGATCTTGCACAAGCGTTTTCAGCAAACGATAGAGAAAGGTGAAGCTATTGTATTCATGGGACACGGCACCGAGCATGCTGCCAATGACAGGTATGCCCGTATCAATAAGATCATGAAGAACTATAGCAAGTTCATGATCGTCGGAACCGTCGAGTCCGATCCCTCTATCAATGATGTTATTGCCGAACTGAAAGAAACCGGTGCCACGGCCGTAACAATGATGCCGCTGATGAGTGTGGCAGGCGACCATGCTACGAATGATATGGCCGGAGATGAGGACGATAGCTGGAAGACGTTGCTGACCAATGCCGGCTACACAGTTTCTATAGACAAGCTGGACAATGGCAATTTCTCAGCTCTTGGAGATATAGAAGAGATCCGGAATATCTGGCTCAAGCATATGAAAGCCACCTCTGCTCGC","6.20","-3.35","32612","MKKLILATLGLMAIAMLSCSSNNKDLENKGEATLLVTFGSSYKAPRETYAKIEKTFAAAYPDQRISWTYTSSIIRKKLAQQGIYIDAPDEALEKLARLGYKKINVQSLHVIPGREYDEMIDFVNKFKAAHSDITVKVGAPLFDTDEDMREVAEILHKRFQQTIEKGEAIVFMGHGTEHAANDRYARINKIMKNYSKFMIVGTVESDPSINDVIAELKETGATAVTMMPLMSVAGDHATNDMAGDEDDSWKTLLTNAGYTVSIDKLDNGNFSALGDIEEIRNIWLKHMKATSAR","719894 720772","See ABC Transporters AnalysisVeith et al. (2002) identified this protein by two-dimensional gel electrophoresis and peptide mass fingerprinting of outer membranes prepared from strain W50. This protein contains a putative lipoprotein signal sequence.Dashper et al. (2000) rename what had been Pga30. The proximity to a ton_B protein is apparent (PG0601) as well as the contiguity with probable ABC elements (PG0603, PG0604, PG0605).PG0602 also contains a potential SBP domain related to the ABC system.Roper et al. (2000) assign a role in cobalamin biosynthesis to this protein, hence the gene is denoted cbiK. See in this regard PG193 (cbiC), PG0192 (cbiET), PG0191 (cbiGF), PG0190 (cbiJD), PG1040 (cbiA), PG1038 (cbiP), PG1037 (cobD), PG1036 (cobD/cbiB), PG0631 (cobU), PG0632 (cobT), PG0633 (cobS), PG0434 (hemN/F), PG0438 (cbiL), PG0112 (hemH), PG0193 (cbiH).Ross, et al.(2001) select PG0602 as one of fifteen vaccine candidate antigens, based on in vitro and in vivo laboratory studies of 120 candidates screened by bioinformatics techniques from the whole W50 genome.TIGR ID: PG0669","heme-binding protein/peripheral outer membrane chelatase","Cytoplasm, Periplasm","Essentially identical (292aa out of 293) to two W50 strain proteins, heme-binding protein FetB (AAF03904) and immunoreactive 33 kD antigen PG125 (AAD38409). Residues 31-287 are 37% similar to CbiK, a cobalamin biosynthesis protein, in Salmonella typhimurium (AAA27262) and residues 31-151 are 42% similar to a CbiK protein in Lactobacillus reuteri (AAG35190).","
InterPro
IPR010388
Family
Anaerobic cobalt chelatase
PIRSF033579\"[1-293]TAnaer_Co_chel
PF06180\"[31-292]TCbiK
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.1400\"[29-167]TG3DSA:3.40.50.1400
PS51257\"[1-19]TPROKAR_LIPOPROTEIN
SSF53800\"[30-293]TSSF53800


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 31-287 are 37% similar to a (CBIK PROTEIN COBALAMIN BIOSYNTHESIS) protein domain (PD123271) which is seen in CBIK_SALTY.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Tue Jan 7 14:23:14 2003","Sat Jun 2 15:50:29 MDT 2001","Thu Dec 14 12:37:20 MST 2000","Thu Dec 14 12:19:36 MST 2000","","Wed Mar 14 08:51:39 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Thu Dec 14 12:19:36 MST 2000","Wed Mar 14 08:51:39 MST 2001","-57% similar to PDB:1QGO ANAEROBIC COBALT CHELATASE IN COBALAMIN BIOSYNTHESIS FROM SALMONELLA TYPHIMURIUM (E_value = 3.6E_38);","","","Residues 31 to 292 (E-value = 1.4e-167) place PG0602 in the CbiK family which is described as Cobalt chelatase (CbiK) (PF06180)","Wed Mar 14 08:51:39 MST 2001","34540467","Thu Feb 7 17:00:26 2002","Veith,P., Talbo,G., Slakeski,N., Dashper,S., Moore,C.,Paolini,R., Reynolds,E., Major outer membrane proteins and proteolytic processing of RgpA, and Kgp of Porphyromonas gingivalis W50, Biochem J. 2002 (in press).Ross BC, Czajkowski L, Hocking D, Margetts M, Webb E, Rothel L, Patterson M, Agius C, Camuglia S, Reynolds E, Littlejohn T, Gaeta B, Ng A, Kuczek ES, Mattick JS, Gearing D, Barr IG, Identification of vaccine candidate antigens from a genomic analysis of Porphyromonas gingivalis, Vaccine 2001 Jul 20;19(30): 4135-42, PMID: 11457538.Hendtlass,A.J., Slakeski,N. and Reynolds,E.C. Porphyromonas gingivalis antigens for the diagnosis and treatment of periodontitis, Patent: Australia AU 97/00212 29-MAR-1997; The University of Melbourne; The School of Dental Science; Melbourne, Victoria, Australia.Jackson,C.A., Hoffmann,B., Slakeski,N., Cleal,S., Hendtlass,A.J. and Reynolds,E.C. 2000. A consensus Porphyromonas gingivalis promoter sequence. FEMS Microbiol. Lett. 186 (1): 133-138. Hendtlass A, Dashper SG, Reynolds EC.Identification of an antigenic protein Pga30 from Porphyromonas gingivalis W50.Oral Microbiol Immunol. 2000 Dec;15(6):383-7.PMID: 11154436Dashper SG, Hendtlass A, Slakeski N, Jackson C, Cross KJ, Brownfield L, Hamilton R, Barr I, Reynolds EC.Characterization of a novel outer membrane hemin-binding protein of Porphyromonas gingivalis.J Bacteriol. 2000 Nov;182(22):6456-62.PMID: 11053391Roper JM, Raux E, Brindley AA, Schubert HL, Gharbia SE, Shah HN, Warren MJ. The enigma of cobalamin (Vitamin B12) biosynthesis in Porphyromonas gingivalis. Identification andcharacterization of a functional corrin pathway.J Biol Chem. 2000 Dec 22;275(51):40316-23.PMID: 11007789 ","Roth JR, Lawrence JG, Rubenfield M, Kieffer-Higgins S, Church GM, Characterization of the cobalamin (vitamin B12) biosynthetic genes of Salmonella typhimurium, J Bacteriol 1993 Jun;175(11):3303-16, PubMed: 8501034.","Thu Feb 7 15:44:41 2002","Thu Dec 14 12:37:20 MST 2000","1","","","PG0669" "PG0603","720893","722029","1137","ATGAAACGATATTCTGTCACTTTCTTTTTGTCGGCTATTCTCTTTCTGATAGGGGCTGGCTGCAATCGTACCCGTACCCAAGAGCAAAAGGCAACCTCCGCCATATCCTCCGACAGTCTGCACCCACAGTATGCAGAGGGTTTCCGTCTTGATGCTGGCGAAGGATGTTATCTTCTTTCCATCGAAGATCCGCAGCAGGAATCGCACAAGGAATATCGCTTCGCTTTGGTTCCGAAAGGGACATATCCGGTTATTCCTGAAGGATATACTGCCGTGACCATACCGGTAGAGAGGGTGGTGTGTATGACTACGCTGCAGCTTTCCAATTTTATTGCTCTGGATGCGCAGTCTCTGGTGGCAGGAATATCCAGTACCCGATATTTGAGGGATTCTGTCATGAAAGCACAGCTTCAAGACGGTCGTACGCATAAAATAGGTATCGAGGGAAATTTCGATCGCGAGGTAGTCATGTCGTTGCAGCCGGATTTGATCCTGATTTCGCCTTTCAAGCGTGGGGGATACGATGTGTTGGAACAAGTATCCGTACCCTTGATACCCCATTTAGGCTATAAAGAGCTGACACCTCTCGGTCAGACAGAGTGGGTGAAGCTCATCGGCCTTCTTACGGGACAGTACGACAAGGCTTGTCGTTTTTTTTCGGAGATAGAAACACGCTACCATACTTTGACCGGATATGCCGATGAAGTGACCGATCGGCCCATTGTCTTTAGCGGAGAGATGCGCGGAGGCAACTGGTACGCCGTAGGAGGAAAGAGCTATCTGGCACAGCAAATACGCGATGCCGGAGGAGAGTATTTCCTGAAAGACGATCAGCGATCCGGTGGTGTTTCCCTCGACTTCGAGACGGTCTACAGCCGATCCGATTCGGCTCGCTACTGGCGAATCCTCAACAGCTATCCCGGGGAGTTCGGTTACGAAGCTTTGAAAGCCGAAGACAGCCGATATGCCGATTTCAGGGCATTCAAGGAAAAAGGCGTGATATACTGCAACCTGAGGGAAACAGCCTTCTACGAACTCATGCCCATGCATCCCGATTGGGTGCTGGCCGATCTTATCGCTATCTTGCACCCCGGACTACTTCCCGACCACCAACCGCATTTCTATTATTTGCTCCAA","5.70","-7.05","42913","MKRYSVTFFLSAILFLIGAGCNRTRTQEQKATSAISSDSLHPQYAEGFRLDAGEGCYLLSIEDPQQESHKEYRFALVPKGTYPVIPEGYTAVTIPVERVVCMTTLQLSNFIALDAQSLVAGISSTRYLRDSVMKAQLQDGRTHKIGIEGNFDREVVMSLQPDLILISPFKRGGYDVLEQVSVPLIPHLGYKELTPLGQTEWVKLIGLLTGQYDKACRFFSEIETRYHTLTGYADEVTDRPIVFSGEMRGGNWYAVGGKSYLAQQIRDAGGEYFLKDDQRSGGVSLDFETVYSRSDSARYWRILNSYPGEFGYEALKAEDSRYADFRAFKEKGVIYCNLRETAFYELMPMHPDWVLADLIAILHPGLLPDHQPHFYYLLQ","720890 722029","TIGR ID: PG0670See ABC Transporters Analysis
","possible ferrichrome-binding periplasmic protein","Cytoplasm, Outer membrane, Periplasm","Weak hits to three Methanococcus jannaschii predicted coding regions, 21% similar to MJ0878 (AAB98893), 23% similar to MJ0872(AAB98880) and 19% similar to MJ0642 (AAB98644).","
InterPro
IPR002491
Family
Periplasmic binding protein
PS50983\"[98-366]TFE_B12_PBP
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.1980\"[95-223]TG3DSA:3.40.50.1980
PS51257\"[1-21]TPROKAR_LIPOPROTEIN
SSF53807\"[93-363]TSSF53807


","BeTs to 4 clades of COG0614COG name: Ferrichrome-binding periplasmic proteinsFunctional Class: PThe phylogenetic pattern of COG0614 is aM-K--VCEBRhUJ-------Number of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","Residues 95-375 are 22% similar to a (PROTEIN MJ0642 MJ0878) protein domain (PD041247) which is seen in Y878_METJA.Residues 133-329 are 24% similar to a (PROTEIN PRECURSOR SIGNAL PERIPLASMIC) protein domain (PD002027) which is seen in Y872_METJA.","","Thu Jun 14 13:06:24 MDT 2001","","Thu Jun 14 13:06:24 MDT 2001","Thu Jun 14 13:06:24 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:06:24 MDT 2001","Thu Jun 14 13:06:24 MDT 2001","","Tue Jun 19 16:09:50 MDT 2001","Fri Dec 15 12:01:06 MST 2000","Fri Dec 15 12:01:06 MST 2000","Thu Dec 14 18:06:21 MST 2000","","Tue Jun 19 15:35:55 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 2-379 show 24% similarity to PG0586, a conserved hypothetical protein.","Tue Jun 19 16:09:50 MDT 2001","Mon Feb 12 13:48:46 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Jun 19 15:35:55 MDT 2001","34540468","","","Dashper SG, Hendtlass A, Slakeski N, Jackson C, Cross KJ,Brownfield L, Hamilton R, Barr I, Reynolds EC. Characterization of a novel outer membrane hemin-binding protein of Porphyromonas gingivalis. J Bacteriol. 2000 Nov;182(22):6456-62. PMID: 11053391 ","","Sat Jun 2 16:00:53 MDT 2001","1","","","PG0670" "PG0604","722029","723096","1068","ATGACATCCGTCAGCCACTTACGTACAATTTCTGTCGCAGGTATCCTGGCTGCGCTGGGAGGGGCTGTACTCATTCTCTTCGGGGTTAATCTCTTCCTCGGCTCGGTGGCTATTCCGATGAGCGAGATCTTCCGACATCTTTTTTCAGATCGTCCCGAAGGAGGAGAAGCACTCGTGCACTACAATATCCTATGGAAATCCCGCCTGCCCGAAGCCCTCACGGCTGCTTTTGCCGGCGCAGGTTTATCCGTTAGTGGCTTGCAGATGCAGACCGTCTTTCGCAATCCTTTGGCCGGTCCGTCCGTTCTCGGCATCAGCTCCGGTGCCAGTTTGGGTGTTGCTTTGGTCGTTCTGCTGAGCGGCTCGCTGGGAGGAGTGGCATTGAGTAGCCTGGGTTATATGGGCGAGGTGGCCATGAATATAGCCGCTGCCGTAGGCTCGCTGGCAGTAATGGGGCTGATCGTTTTTGTCAGCACCAAGGTGCGCAGCCACGTTACGCTGCTCATTATCGGCGTTATGATCGGATATGTAGCCACTGCCGTCATCGGGGTATTCAAGTTTTTCAGTATCGAAGAAGATATTCGGGCATACGTAATTTGGGGGTTGGGCAGCTTTTCCCGTGCCACGGATTCGCAACTGAGTTTCTTTGCCATTCTGATGTTGATCTTTATTCCGGCCGGTATGCTCCTTGTCAAGCAGTTGAATCTCTTATTGCTGGGAGAAAGCTACGCACGTAATCTGGGACTGAATACTCGTCGGGCACGGCTGCTCGTGATCTCTTCCGCCGGTTTGCTCATCGCTACCGTCACGGCCTATTGCGGTCCCATCGGCTTTTTGGGGATGGCTGTGCCACACTTGGCACGGGTTATCTTTCACACATCGGATCATCGGATCCTGATGCCTGCTACCTGTTTGATTGGAAGTGCTCTGGCTCTTTTCTGCAATATCATTGCTCGTATGCCGGGGTTTGAGGGGGCTTTGCCCGTCAATTCCGTAACGGCTTTGGTGGGAGCACCTATTATCGTCACCGTTTTGTTCCGGCGCAGACGCTTCAAGGAAGAAACCGAC","10.60","9.53","37473","MTSVSHLRTISVAGILAALGGAVLILFGVNLFLGSVAIPMSEIFRHLFSDRPEGGEALVHYNILWKSRLPEALTAAFAGAGLSVSGLQMQTVFRNPLAGPSVLGISSGASLGVALVVLLSGSLGGVALSSLGYMGEVAMNIAAAVGSLAVMGLIVFVSTKVRSHVTLLIIGVMIGYVATAVIGVFKFFSIEEDIRAYVIWGLGSFSRATDSQLSFFAILMLIFIPAGMLLVKQLNLLLLGESYARNLGLNTRRARLLVISSAGLLIATVTAYCGPIGFLGMAVPHLARVIFHTSDHRILMPATCLIGSALALFCNIIARMPGFEGALPVNSVTALVGAPIIVTVLFRRRRFKEETD","721948 723096","This is a sub-family of bacterial binding protein-dependent transport systems family.See ABC Transporters Analysis
TIGR ID: PG0671","probable iron transport protein","Inner membrane, Cytoplasm","Numerous hits using gapped BLAST including 33% similarity to a probable permease of ABC transporter in Pseudomonas aeruginosa (AAG08093). Residues 63-350 are 35% similar to a hemin ABC transporter in Deinococcus radiodurans (AAF12576) and residues 22-349 are 35% similar to a hemin permease in Yersinia enterocolitica (pir||S54438).","
InterPro
IPR000522
Family
Bacterial transport system permease protein
PF01032\"[22-339]TFecCD
InterPro
IPR002016
Family
Haem peroxidase, plant/fungal/bacterial
PS00436\"[283-294]?PEROXIDASE_2
noIPR
unintegrated
unintegrated
SSF81345\"[1-348]TSSF81345


","BeTs to 8 clades of COG0609COG name: Iron, hemin, cobalamine permeasesFunctional Class: P,HThe phylogenetic pattern of COG0609 is AM-K--VCEB-Huj-------Number of proteins in this genome belonging to this COG is 2","***** PF01032 (FecCD transport family) with a combined E-value of 1.4e-27. PF01032A 68-109 PF01032B 274-288","Residues 240-351 are 41% similar to a (PROTEIN TRANSPORT PERMEASE IRON) protein domain (PD001557) which is seen in CBRB_ERWCH.Residues 59-222 are 27% similar to a (PROTEIN TRANSPORT PERMEASE IRON) protein domain (PD001584) which is seen in YE71_HAEIN.","","Thu Jun 14 13:07:20 MDT 2001","","Thu Jun 14 13:07:20 MDT 2001","Thu Jun 14 13:07:20 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:07:20 MDT 2001","Thu Jun 14 13:07:20 MDT 2001","","Tue Jun 19 15:33:42 MDT 2001","Thu Dec 14 16:15:53 MST 2000","Tue Jun 19 15:33:42 MDT 2001","Thu Dec 14 16:01:35 MST 2000","Tue Jun 19 15:29:28 MDT 2001","Tue Jun 19 15:29:28 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 21-350 share 40% identity with PG0585, a predicted permease protein (probable hemin permease).","Tue Jun 19 15:33:42 MDT 2001","Fri Mar 23 11:27:10 MST 2001","-48% similar to PDB:1L7V Bacterial ABC Transporter Involved in B12 Uptake (E_value = 3.6E_30);-52% similar to PDB:2NQ2 An inward-facing conformation of a putative metal-chelate type ABC transporter. (E_value = 3.6E_30);-49% similar to PDB:2DJT Solution structures of the PDZ domain of human unnamed protein product (E_value = 3.6E_30);","","","Residues 34 to 347 (E-value = 1.2e-67) place PG0604 in the FecCD family which is described as FecCD transport family (PF01032)","Tue Jun 19 15:29:28 MDT 2001","34540469","","","Stojiljkovic,I. and Hantke,K. 1994. Transport of haemin across the cytoplasmic membrane through a haemin-specific periplasmic binding-protein-dependent transport system in Yersinia enterocolitica. Mol. Microbiol. 13 (4): 719-732. PubMed: 7997183.","","Fri Mar 23 11:35:51 MST 2001","1","","","PG0671" "PG0605","723143","723898","756","ATGGAGAAGTCAATAGAGCTGAGCCGGCTTGCTATCGGATATCGAACCAAATCCGGAGACCGCATCGTGGCCTCCGGTCTGGAAGCTCATCTCCATGCCGGACAATTAACGGCTCTGCTCGGTGTGAATGGTGCCGGCAAGAGTACGCTCATGCGTACGATGGCAGGATTCATGAAGCCCTTATCGGGACAAATACATCTACTGGGGCGGTCATTGGACAGCTATAAAGAGATAGAAATAGCCAAACGTATAGGCGTAGTGCTGACCGATAATTGCCGGATTGCCGGGATGACGGCAGGCGAACTCGTCGCATTGGGACGTAGCCCTTATACCGGATTCTGGGGCAGATTGCAGAAAGGAGACAGAAAGCTCGTGGCAGAAGCCGTAGAACGTGTGGGAATCGCTCCGCTGATCAATCGCGAACTAACTACGCTCAGCGATGGAGAGAGACAAAAAGTAGTCATCGCAAAAGCCCTGGCACAGCAGACACCGATCATCTTCCTCGACGAACCGACGGCTTTCCTCGATTATCCCAGCAAGATGGAACTGTTGCACCTCTTGCACAGCCTGGCCCATGATACCGGCAGGACTATCTTCCTCTCCACTCATGATCTGGATGCCATTTTACCCATGGCCGATCGCGTTTGGCTGCTGGACAAGGAGCGTTCTTTCCGTGAGGGCTCGCCGGCATCTTTGGCCTCTGCGCTTGAAGATTATTTCGGCTATATCCATCCTTCTCCCACATTAGAGCCGGTG","7.80","1.88","27558","MEKSIELSRLAIGYRTKSGDRIVASGLEAHLHAGQLTALLGVNGAGKSTLMRTMAGFMKPLSGQIHLLGRSLDSYKEIEIAKRIGVVLTDNCRIAGMTAGELVALGRSPYTGFWGRLQKGDRKLVAEAVERVGIAPLINRELTTLSDGERQKVVIAKALAQQTPIIFLDEPTAFLDYPSKMELLHLLHSLAHDTGRTIFLSTHDLDAILPMADRVWLLDKERSFREGSPASLASALEDYFGYIHPSPTLEPV","723143 723898","TIGR ID: PG0672See ABC Transporters Analysis
","ABC transport system component; ATP-binding protein (probable ferric enterobactin transport ATP-binding protein)","Cytoplasm, Inner membrane","Many significant hits to ABC transporter system proteins including a hypothetical ABC transporter ATP-binding protein in Methanococcus jannaschi (Q58283) a second ferric enterobactin transport ATP-binding protein homolog in M.jannaschii (A64409) and a ferrochrome transport, ATP-binding protein in Bacillus subtilis (P49938). This sequence is similar to CT068.","
InterPro
IPR003439
Domain
ABC transporter related
PD000006\"[144-187]TABC_transporter
PF00005\"[34-221]TABC_tran
PS50893\"[5-245]TABC_TRANSPORTER_2
InterPro
IPR003593
Domain
AAA+ ATPase, core
SM00382\"[33-222]TAAA
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[19-232]TG3DSA:3.40.50.300
PTHR19222\"[5-231]TPTHR19222
PTHR19222:SF31\"[5-231]TPTHR19222:SF31
SSF52540\"[5-245]TSSF52540


","BeTs to 7 clades of COG1120COG name: ABC-type iron (III) transport system, ATPase componentFunctional Class: PThe phylogenetic pattern of COG1120 is AM-K--VcEB-Hujgp-----Number of proteins in this genome belonging to this COG is 2","***** IPB001617 (ABC transporters family) with a combined E-value of 3e-10. IPB001617A 39-54 IPB001617B 146-157","Residues 30-74 are 48% similar to a (ATP-BINDING TRANSPORT PROTEIN TRANSPORTER ABC) protein domain (PD000005) which is seen in HMUV_YERPE.Residues 145-183 are 61% similar to a (ATP-BINDING TRANSPORT PROTEIN TRANSPORTER ABC) protein domain (PD000006) which is seen in Y873_METJA.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Mon Jul 28 15:24:16 2008","Fri Mar 23 11:46:50 MST 2001","Fri Dec 15 12:14:00 MST 2000","Thu Dec 14 16:33:44 MST 2000","Wed Mar 14 09:15:39 MST 2001","Wed Mar 14 09:15:39 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 4-241 are 40% similar to PG0584, a predicted ferric enterobactin transport protein/iron(III) dicitrate transport system. Similarities are also seen to PG0921, PG1049, PG0254, PG0618, PG1533, PG1467, PG1477, PG1497, PG1211, PG0903, PG1917, PG1048, PG0844, PG0566, and PG1923 many of which are predicted ABC transporter proteins.","Tue Apr 3 10:49:23 MDT 2001","Mon Jul 28 15:24:16 2008","-54% similar to PDB:2NQ2 An inward-facing conformation of a putative metal-chelate type ABC transporter. (E_value = 9.2E_24);-48% similar to PDB:1MT0 ATP-binding domain of haemolysin B from Escherichia coli (E_value = 8.1E_20);-48% similar to PDB:2FF7 The ABC-ATPase of the ABC-transporter HlyB in the ADP bound state (E_value = 8.1E_20);-48% similar to PDB:2FFB The crystal structure of the HlyB-NBD E631Q mutant in complex with ADP (E_value = 1.8E_19);-48% similar to PDB:2FGK Crystal structure of the ABC-cassette E631Q mutant of HlyB with bound ATP (E_value = 1.8E_19);","","","Residues 34 to 221 (E-value = 2e-54) place PG0605 in the ABC_tran family which is described as ABC transporter (PF00005)","Wed Mar 14 09:15:39 MST 2001","34540470","","","","","","1","","","PG0672" "PG0606","724893","724303","591","ATGAAAACAGATATTATTTTGGCCGGTGTCGGAGGCCAAGGCATTTTGTCCATTGCAGCAGCTATCGGTTCGGCTGCTCTGACCAACAATTTGTATTTGAAGCAGGCCGAAACCCATGGCATGAGCCAGCGAGGTGGTGATGTACAGTCTTTTCTGCGCCTGTCGGATGCACCCATTTACTCTGACCTGATCCCTATCGGGGGAGCGGATCTTATCCTCTCCGTGGAGCCGATGGAAGCATTGCGCTATCTTCCTTATTTGAAACCTGACGGTTATGTAGTGACCAATACGGTTCCGTTCATCAACATCCCGAACTATCCCGAGACTACGTCAGTTATCTCCAAGATCGAATCTCTTCCTCATCACGTTCTGATCGATGCGGACAGCATCGCCCGTGATGAGGTAGGCAATGTCCGTGCATCCAACTTCGTGATGCTCGGAGCCGCTTCTCCCTTCATTGAGATTCCTTTCGACTATCTGGCAGGCGGTATCGAAGCTATTTTCAGCCGCAAAGGACAAGAGGTGGTGGATATGAACCTCAAGGCTCTGAATGCAGGACGCGAGTTTGCCCTCCGATACGCAGCCGGAAAA","4.90","-5.28","21065","MKTDIILAGVGGQGILSIAAAIGSAALTNNLYLKQAETHGMSQRGGDVQSFLRLSDAPIYSDLIPIGGADLILSVEPMEALRYLPYLKPDGYVVTNTVPFINIPNYPETTSVISKIESLPHHVLIDADSIARDEVGNVRASNFVMLGAASPFIEIPFDYLAGGIEAIFSRKGQEVVDMNLKALNAGREFALRYAAGK","724893 724303","The alpha subunit is immediaely upstream, PG0607.TIGR ID: PG0674","indolepyruvate ferredoxin oxidoreductase beta subunit","Cytoplasm","Numerous hits to indolepyruvate ferredoxin oxidoreductase, subunit bets proteins including NP_070854 in Archaeoglobus fulgidus, BAA29855 in Pyrococcus horikoshii and CAB50203 in Pyrococcus abyssi","
InterPro
IPR002869
Domain
Pyruvate ferredoxin/flavodoxin oxidoreductase
PF01558\"[11-188]TPOR
noIPR
unintegrated
unintegrated
G3DSA:3.40.920.10\"[2-188]TG3DSA:3.40.920.10
SSF53323\"[1-192]TSSF53323


","BeTs to 8 clades of COG1014COG name: Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunitFunctional Class: CThe phylogenetic pattern of COG1014 is AMTK-QVce-r-UJ---l---Number of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","Residues 4-186 are 34% similar to a (OXIDOREDUCTASE PYRUVATE SUBUNIT GAMMA) protein domain (PD001746) which is seen in O28249_ARCFU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Tue Mar 26 17:24:44 2002","Mon Apr 30 17:47:38 MDT 2001","Thu Dec 14 16:46:34 MST 2000","Tue Mar 26 17:24:12 2002","","Mon Apr 30 17:45:58 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","None.","Thu Dec 14 16:46:34 MST 2000","Tue Jul 22 12:51:42 2008","-48% similar to PDB:1W7P THE CRYSTAL STRUCTURE OF ENDOSOMAL COMPLEX ESCRT-II (VPS22/VPS25/VPS36) (E_value = );-60% similar to PDB:1KU9 X-ray Structure of a Methanococcus jannaschii DNA-Binding Protein: Implications for Antibiotic Resistance in Staphylococcus aureus (E_value = );-39% similar to PDB:1S5P Structure and substrate binding properties of cobB, a Sir2 homolog protein deacetylase from Eschericia coli. (E_value = );-45% similar to PDB:1YS6 Crystal structure of the response regulatory protein PrrA from Mycobacterium Tuberculosis (E_value = );-45% similar to PDB:1YS7 Crystal structure of the response regulator protein prrA comlexed with Mg2+ (E_value = );","","","Residues 11 to 188 (E-value = 2.6e-33) place PG0606 in the POR family which is described as Pyruvate ferredoxin/flavodoxin oxidoreductase (PF01558)","Mon Apr 30 17:45:58 MDT 2001","34540471","","","","","","1","","","PG0674" "PG0607","726527","724923","1605","ATGCAAAAACAATTGTTGTTGGGGGTAGAAGCTATAGCCCAAGCTGCTTTGGATGCAGGTATATCCGGCGTATATGCCTACCCCGGTACTCCCTCTACGGAAATCACCGAGCATATCCAAAACTCTCGGATGGCTAAGGAAAGAAATGTCCATCGGGAATGGGCGGCAAACGAAAAAACCGCTATGGAATCAGCTCTCGGCATGTCCTACGCAGGCAAGCGCGCTCTCGTATGTATGAAGCATGTGGGGATGAACGTAGCAGCAGACTGCTTTATGAATGCTGCCATCACCGGTGCGAATGGCGGTATGGTGATCGTTGCTGCCGACGACCCCTCTATGCACTCGTCTCAAAATGAACAAGACTCTCGCGTGTATGGCCAGTTTGCCATGATTCCTGTGATGGAGCCATCCAACCAACAGGAAGCTTATGACATGACGCGCCTTGCCTTCGATCTATCCGAACGTTTGGGTACACCCGTCATGATGCGTATTACGACTCGTCTCGCTCACTCTCGTGCCGGTGTCGTTCAGACCGAGCCGATCGGAGAGAACGAATTGCACCTGCCGGAAGACAAACGCCAATATGTATTGCTCCCCGGTATTGCTAAGAAAAGATACAGAATCCTCCTCGACAAGCAGACCGATTTCGTACGGGAGTCCGAGAACTCACCCTATACCGAATATGTCGATGCCGCTGATAAGTCCAAGGGTATAGTGGCATGCGGTATCGCATACAACTACCTGATGGAGGCTTTCAAGGCTCAGGTGCCTTATCCCGTTCTCAAAGTAACGCAGTATCCTATCCCTCACAAGCAGATGGAGCGATTGCTCAACGAATGCGGTGACATCGTAGTCATGGAAGAAGGCTATCCCGTGGTAGAACAGCTACTAAAAGGCTTCCCCGGTTTGGAGCGGATCAAAGGTCGTCTCGATGGCACATTGCCCCGTGATGGAGAGTTGAATCCGGATCATGTGGCAAAAGCCTTCAATATACCGGTCGTGGAGGGAGAACCTATCCCCGATCTCGTTGCGGCACGTCCGCCCGCCCTGTGCAAAGGCTGTAGCCACCGCGATGTGTACGATGCGCTGAACGAGGTTCTTACAGAATATCCCAACGGACGTGTCTTCTCCGATATCGGATGTTATACGCTTGGTGCTTTGCCTCCTTATGAAGCCATCAATTCCTGCGTGGATATGGGTGCATCTATCACGATGGCCAAAGGGGCTGCCGATGCCGGCTTGTTCCCGGCTGTGTCTGTAATCGGCGACTCTACTTTCACTCACTCCGGAATAACGGGTCTTCTCGATGCCATCAATGAGAATAGCAACATTACGGTGATTATCTCGGACAATGAATCCATCTCCATGACCGGAGGTCAGCATTCGTCTGCATACGGCAAAGTAGAGGCCATCTGTCGCGGTATCGGAGTAGATCCCGATCACATCAGGGAGCTGTTGCCGGTACCCAAGAATCATGACGAACTATGCAGCATCATCCGGGAGGAAATCAACTATGAAGGTGTATCCGTCATCATTCCCCGTCGCGTCTGCATCCAAAAGCATGCTCGCGACGCCAAAGCTGCCAAACGTGCAAAGGCCAAGGAA","5.60","-12.10","58395","MQKQLLLGVEAIAQAALDAGISGVYAYPGTPSTEITEHIQNSRMAKERNVHREWAANEKTAMESALGMSYAGKRALVCMKHVGMNVAADCFMNAAITGANGGMVIVAADDPSMHSSQNEQDSRVYGQFAMIPVMEPSNQQEAYDMTRLAFDLSERLGTPVMMRITTRLAHSRAGVVQTEPIGENELHLPEDKRQYVLLPGIAKKRYRILLDKQTDFVRESENSPYTEYVDAADKSKGIVACGIAYNYLMEAFKAQVPYPVLKVTQYPIPHKQMERLLNECGDIVVMEEGYPVVEQLLKGFPGLERIKGRLDGTLPRDGELNPDHVAKAFNIPVVEGEPIPDLVAARPPALCKGCSHRDVYDALNEVLTEYPNGRVFSDIGCYTLGALPPYEAINSCVDMGASITMAKGAADAGLFPAVSVIGDSTFTHSGITGLLDAINENSNITVIISDNESISMTGGQHSSAYGKVEAICRGIGVDPDHIRELLPVPKNHDELCSIIREEINYEGVSVIIPRRVCIQKHARDAKAAKRAKAKE","726527 724923","The beta subunit is immediately downstream, PG0606.TIGR ID: PG0675","indolepyruvate ferredoxin oxidoreductase alpha subunit","Cytoplasm, Periplasm","Numerous hits using gapped BLAST to indolepyruvate ferredoxin oxidoreductase, subunit alpha proteins including NP_070318 in Archaeoglobus fulgidus, BAA29856 in Pyrococcus horikoshii, and CAB49988 in Pyrococcus abyssi.This sequence corresponds to BT0430.","
InterPro
IPR002880
Domain
Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal
PF01855\"[136-161]TPOR_N
InterPro
IPR011766
Domain
Thiamine pyrophosphate enzyme, C-terminal TPP-binding
PF02775\"[378-467]TTPP_enzyme_C
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.970\"[5-180]T\"[350-464]TG3DSA:3.40.50.970
SSF52518\"[2-266]T\"[324-532]TSSF52518


","BeTs to 7 clades of COG0674COG name: Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunitFunctional Class: CThe phylogenetic pattern of COG0674 is AMTKYQVce-r-UJ---l---Number of proteins in this genome belonging to this COG is 4","No significant hit to the Blocks database.","Residues 59-394 are 41% similar to a (INDOLEPYRUVATE OXIDOREDUCTASE ALPHA) protein domain (PD040242) which is seen in O28783_ARCFU.Residues 399-518 are 35% similar to a (THIAMINE FLAVOPROTEIN PYROPHOSPHATE LYASE SYNTHASE) protein domain (PD000397) which is seen in O58865_PYRHO.Residues 3-58 are 55% similar to a (OXIDOREDUCTASE PYRUVATE SUBUNIT ALPHA) protein domain (PD001774) which is seen in O58865_PYRHO.Residues 399-517 are 31% similar to a (INDOLEPYRUVATE OXIDOREDUCTASE ALPHA SUBUNIT PYRUVATE) protein domain (PD187553) which is seen in O28783_ARCFU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Tue Mar 26 17:25:35 2002","Mon Apr 30 17:46:50 MDT 2001","Tue Dec 2 16:24:43 2003","Tue Mar 26 17:25:35 2002","","Mon Apr 30 17:46:50 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Thu Dec 14 16:55:12 MST 2000","Tue Jul 22 12:50:37 2008","-41% similar to PDB:1YD7 Conserved hypothetical protein Pfu-1647980-001 from Pyrococcus furiosus (E_value = 1.1E_10);","","","Residues 14 to 253 (E-value = 5.6e-05) place PG0607 in the POR_N family which is described as Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-binding domain (PF01855)Residues 349 to 520 (E-value = 2e-33) place PG0607 in the TPP_enzyme_C family which is described as Thiamine pyrophosphate enzyme, C-terminal TPP binding domain (PF02775)","Tue Dec 2 16:24:43 2003","34540472","","","","","","1","","","PG0675" "PG0608","727366","726608","759","ATGAACCCTATCGCATTAATCACCGGAGCCACATCCGGCATCGGTGCAGCTTCGGCTCGCCGCTTGGCATCGCTCGATTATAACCTTATCATCACGGGACGACGCTCCGAACGTTTGCAAAACATTGCCGATGAAATCAGAGCTGAATACCCTGTCGAAATCCTCCCGCTCTCTTTCGATGTCCGCAATCGCGAAGAAGTAGAAGCCCATTTGGGCAATTTGCCTGATCCTTGGCAGGCCGTTTCCGTCCTCGTGAATAATGCCGGCTTGGCAGCGGGACTCGACCCCATACAGTCCGGTGACATTGAAGACTGGGAACGTATGATAGACACCAATATCAAAGGACTCCTCTACGTAACTCGCACAATCAGCCCGGGTATGATAGCCCGAAGCGCCGGCCATATCATCAATATCGGGTCTATTGCCGGCAAGGAAGTTTACTCTAACGGCAATGTCTATTGTGCCACGAAGCATGCCGTAGATGCTCTTTCGAAAGCGATGCGTATAGATATGCTTCCTTATGGCATCAAAGTCACACAGATTTGTCCCGGAGCAGTGGAGACGGAGTTCTCGCTGGTGCGCTTCCATGATGATCAGGCCAAGGCCGATGCCGTGTACAAGGGCTTCACTCCTCTCTGTGCGAACGACATAGCGGAGTGTATTGCGGCCGTACTGAACCTGCCTGATAATATCTGTATCAACGATATGGTGGTCATGCCGAAAGCGCAGGCCGGCAGCGGACACTTTTTCAAACAAGTT","5.20","-6.03","27322","MNPIALITGATSGIGAASARRLASLDYNLIITGRRSERLQNIADEIRAEYPVEILPLSFDVRNREEVEAHLGNLPDPWQAVSVLVNNAGLAAGLDPIQSGDIEDWERMIDTNIKGLLYVTRTISPGMIARSAGHIINIGSIAGKEVYSNGNVYCATKHAVDALSKAMRIDMLPYGIKVTQICPGAVETEFSLVRFHDDQAKADAVYKGFTPLCANDIAECIAAVLNLPDNICINDMVVMPKAQAGSGHFFKQV","727366 726608","TIGR ID: PG0676","short-chain dehydrogenase","Cytoplasm","Numerous hits using gapped BLAST including a probable short-chain dehydrogenase, AAG08292, in Pseudmonas aeruginosa, a putative oxidoreductase AAC74612 in Escherichia coli K12, and putative short chain dehydrogenase emb|CAB86467.1 in Schizosaccharomyces pombe.","
InterPro
IPR002198
Family
Short-chain dehydrogenase/reductase SDR
PR00080\"[79-90]T\"[133-141]T\"[153-172]TSDRFAMILY
PTHR19410\"[4-242]TADH_short_C2
PF00106\"[3-172]Tadh_short
PS00061\"[140-168]TADH_SHORT
InterPro
IPR002347
Family
Glucose/ribitol dehydrogenase
PR00081\"[4-21]T\"[79-90]T\"[127-143]T\"[153-172]T\"[174-191]TGDHRDH
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.720\"[4-197]TG3DSA:3.40.50.720
PTHR19410:SF42\"[4-242]TPTHR19410:SF42
SSF51735\"[1-226]TSSF51735


","BeTs to 6 clades of COG0300COG name: Short-chain dehydrogenases of various substrate specificitiesFunctional Class: RThe phylogenetic pattern of COG0300 is ----y--ceBRhuj-------Number of proteins in this genome belonging to this COG is 1","***** IPB002198 (Short-chain dehydrogenase/reductase (SDR) superfamily) with a combined E-value of 4.7e-15. IPB002198 133-168***** PR01397 (2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature) with a combined E-value of 6.2e-06. PR01397A 9-26 PR01397C 103-123 PR01397D 168-191","Residues 20-212 are 47% similar to a (PROTEIN OXIDOREDUCTASE DEHYDROGENASE REDUCTASE NAD NADP) protein domain (PD000038) which is seen in YDFG_ECOLI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Dec 14 17:06:43 MST 2000","Thu Dec 14 17:06:43 MST 2000","Thu Dec 14 17:06:43 MST 2000","Tue Apr 3 11:06:44 MDT 2001","Tue Apr 3 11:06:44 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 5-227 share 32% identity with PG1808, 3-oxoacyl (acyl-carrier-protein) reductase.Residues 2-193 share 24% identity with PG1095, 3-oxyacyl (acyl-carrier protein) reductase.Residues 6-188 are alao 25% similar to PG1082, a conserved hypothetical protein (probable oxidoreductase).","Tue Apr 3 11:06:44 MDT 2001","Tue Apr 3 11:06:44 MDT 2001","-66% similar to PDB:2NWQ Short chain dehydrogenase from Pseudomonas aeruginosa (E_value = 3.2E_53);-54% similar to PDB:2JAH BIOCHEMICAL AND STRUCTURAL ANALYSIS OF THE CLAVULANIC ACID DEHYDEOGENASE (CAD) FROM STREPTOMYCES CLAVULIGERUS (E_value = 4.7E_28);-54% similar to PDB:2JAP CLAVULANIC ACID DEHYDROGENASE: STRUCTURAL AND BIOCHEMICAL ANALYSIS OF THE FINAL STEP IN THE BIOSYNTHESIS OF THE BETA-LACTAMASE INHIBITOR CLAVULANIC ACID (E_value = 4.7E_28);-50% similar to PDB:1XG5 Structure of human putative dehydrogenase MGC4172 in complex with NADP (E_value = 2.0E_23);-53% similar to PDB:1W4Z STRUCTURE OF ACTINORHODIN POLYKETIDE (ACTIII) REDUCTASE (E_value = 6.1E_20);","","","Residues 5 to 246 (E-value = 7.1e-56) place PG0608 in the adh_short family which is described as short chain dehydrogenase (PF00106)","Tue Apr 3 11:06:44 MDT 2001","34540473","","","","","","1","","","PG0676" "PG0608.1","727514","727765","252","TTGTGGCGCGTGTTTTCTGAACGAAGTGGTGCGAGAACTTTTTCGTTGTGGCGCGAGAATTTTTCACTTCCCGAACCAAAACAAAAAAGTTTACGCACCACGTTTTATGGCGTGGCATGTAAGAAGATTTTGGTGCGTAGGCCGATCCTGCATGAGATGCATCTCTACGCTTTAGGGGGGCCGGGTGAGTGGGGGCGGAATCTTTTTGCCGATTTGTTGGCCTGTTCTCTTTATCTTTGCGCTACAGGCGAG","","","9644","LWRVFSERSGARTFSLWRENFSLPEPKQKSLRTTFYGVACKKILVRRPILHEMHLYALGGPGEWGRNLFADLLACSLYLCATGE","","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No significant hits.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Thu Dec 14 18:03:19 MST 2000","Thu Dec 14 17:12:01 MST 2000","Thu Dec 14 17:12:01 MST 2000","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs in P.gingivalis.","Fri Dec 15 12:18:27 MST 2000","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG0609","727794","728984","1191","ATGGGTAAAGTCCTCATTATCGGGGCCGGCGGTGTAGGTACCGTTGTGGCCAAGAAGGTGGCTATGAACACCGATGTATTCACGGAGATCATGTTAGCCAGCCGCACGAGAAGCAAGTGCGACAAGATTGCGTCCGAAATCAAAAACGTCCGGATCCAAACCGCTCAGGTCGATGCCGACAATGTGGAAGAACTGGTGGCTCTGTTCGAGAGTTTCAAACCGGAATTGGTGATCAACGTAGCACTTCCCTATCAGGATCTGACGATCATGGATGCCTGTCTGCGCTGTGGGGTGAACTATCTCGATACGGCCAACTACGAGCCTCTCGACGAAGCCAAGTATGAATACAGTTGGCAGTGGGCTTATCAGGATCGTTTTCGCAAGGCCGGCCTGACTGCTATCCTGGGTTGCGGCTTCGATCCGGGTGTGACGAGTGTATATACGGCTTATGCGGCCAAGCATCATTTCGATGAGATTCATTATCTCGATATTGTGGACTGCAATGGTGGCGACCACCACAAGGCGTTTGCCACGAACTTCAATCCCGAAATCAACATCCGTGAGATCACTCAGAAGGGTAAGTACTGGGAGAACGGCCGTTGGATAGAGACCGAACCGCAGGAAATACACAAGACGCTGACCTATCCGAGTATCGGTGAGCGCGAGTCCTATCTCCTCTATCATGAGGAACTGGAATCACTCGTGAAGAATTTCCCGACGATCAAGCGCGCTCGTTTTTGGATGACGTTCGGACAGGAATATCTGACTCATCTTCGCGTGATGCAGAATATCGGTATGACGCGCATCGACCCGATCATGTACAACGGCGTGGAGATCGTCCCCATCCAATTCCTCAAAGCCGTGCTGCCCAACCCGGGAGACCTCGGTGAGAACTATACGGGCGAGACGAGTATCGGCTGTCGCATCCGCGGTATCCGCGATGGCAAGGAGCGTACCTATTATATCTGGAACAACTGCAGCCACGAGGTCGCCTACAAAGAGACGGGAACGCAGGGTGTAAGCTATACGACGGGTGTCCCTGCCACGGTAGGAGCCATGATGTTCATGAAGGGTATCTGGCGCAAGCCCGGTGTCTTCAATGTGGAGGAGTTCGATCCCGATCCGTTCCTCGAAGAGGTAGCCAAGCAGGGTCTTCCTTGGCACGAGAAGCACGACATCGACTTGGAGCTC","5.30","-11.65","45215","MGKVLIIGAGGVGTVVAKKVAMNTDVFTEIMLASRTRSKCDKIASEIKNVRIQTAQVDADNVEELVALFESFKPELVINVALPYQDLTIMDACLRCGVNYLDTANYEPLDEAKYEYSWQWAYQDRFRKAGLTAILGCGFDPGVTSVYTAYAAKHHFDEIHYLDIVDCNGGDHHKAFATNFNPEINIREITQKGKYWENGRWIETEPQEIHKTLTYPSIGERESYLLYHEELESLVKNFPTIKRARFWMTFGQEYLTHLRVMQNIGMTRIDPIMYNGVEIVPIQFLKAVLPNPGDLGENYTGETSIGCRIRGIRDGKERTYYIWNNCSHEVAYKETGTQGVSYTTGVPATVGAMMFMKGIWRKPGVFNVEEFDPDPFLEEVAKQGLPWHEKHDIDLEL","727698 728984","TIGR ID: PG0677","conserved hypothetical protein; possible saccharopine dehydrogenase","Cytoplasm","Numerous strong hits including a hypothetical protein BAA1026 in Synechocystis sp., BAB07676 in Bacillus halodurans and B75420 in Deinococcus radiodurans strain R1.This sequence is similar to BT4612. ","
InterPro
IPR005097
Family
Saccharopine dehydrogenase
PF03435\"[4-388]TSaccharop_dh
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.720\"[3-194]TG3DSA:3.40.50.720
PTHR12286\"[4-140]TPTHR12286
SSF51735\"[1-194]TSSF51735


","BeTs to 5 clades of COG1748COG name: Saccharopine dehydrogenase and related proteinsFunctional Class: EThe phylogenetic pattern of COG1748 is a--ky--c----uj-------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 119-373 are 63% similar to a (PROTEIN CONSERVED ATP-BINDING PUTATIVE) protein domain (PD041556) which is seen in Q55131_SYNY3.Residues 27-116 are 60% similar to a (PROTEIN ATP-BINDING CONSERVED PUTATIVE) protein domain (PD135157) which is seen in Q55131_SYNY3.","","Thu Jun 14 13:08:09 MDT 2001","","Thu Jun 14 13:08:09 MDT 2001","Thu Jun 14 13:08:09 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:08:09 MDT 2001","Thu Jun 14 13:08:09 MDT 2001","","","Thu Dec 14 17:21:43 MST 2000","Mon Jan 5 15:16:46 2004","Thu Dec 14 17:21:43 MST 2000","","Tue Jun 19 15:26:12 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Thu Dec 14 17:21:43 MST 2000","Thu Jun 14 13:08:09 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 4 to 389 (E-value = 1.5e-209) place PG0609 in the Saccharop_dh family which is described as Saccharopine dehydrogenase (PF03435)","Tue Jun 19 15:26:12 MDT 2001","34540474","","","","","","1","","6","PG0677" "PG0610","729020","729529","510","ATGGTACTTTTGATCGTGGATCCGCAGGTGGATTTCGTAAGCGGTTCGTTGGCTGTCGAAGGTGCACCGAAAGCCATGAAGGCTTTGGCTGAATATATGGCTGCACATCGGAAGGAGATAAAGTCTATCGTCGTGACGATGGATCAGCATCCGGCCGATCATTGCAGCTTCGTGGCACAGGGCGGACAGTGGCCGTCGCATTGTGTCCGCTATACGGTGGGAGCCGCTATCGAACCATGCATTGCGGAGGCTCTGGCTGCTTGTTCGGCCGAGGGTATCCCTGTCGAAATGATAGAGAAGGCTACTACGCAGGAGCGCGATGCTTACAGTGCCTTCGAGACGGAAGTACCCGATTCGTTGCGCTCGGCCGAACGTATAGTCGTGGCCGGAATAGCGGGCGATTACTGCGTGCGTCAGAGCGTGCTCGATCTGGAGCGTCATGGTCTCGGCGAGCGCATCGAACTTCTCAAGGAGGGAATCGCCTATATAGCGGAAGAGGAAAACCGGCCA","4.60","-11.03","18410","MVLLIVDPQVDFVSGSLAVEGAPKAMKALAEYMAAHRKEIKSIVVTMDQHPADHCSFVAQGGQWPSHCVRYTVGAAIEPCIAEALAACSAEGIPVEMIEKATTQERDAYSAFETEVPDSLRSAERIVVAGIAGDYCVRQSVLDLERHGLGERIELLKEGIAYIAEEENRP","728951 729529","TIGR ID: PG0678","pyrazinamidase/nicotinamidase","Cytoplasm","Numerous hits to pyrazinamidase/nicotinamidase genes including CAB49891 in Pyrococcus abyssi, BAA30096 in Pyrococcus horikoshii and AAC07074 in Aquifex aeolicus.","
InterPro
IPR000868
Family
Isochorismatase hydrolase
G3DSA:3.40.50.850\"[2-148]TIsochorismatase_hydro
SSF52499\"[2-166]TIscrsm_hydrolase
noIPR
unintegrated
unintegrated
PTHR11080\"[64-148]TPTHR11080
PTHR11080:SF2\"[64-148]TPTHR11080:SF2


","BeTs to 9 clades of COG1335COG name: Amidases related to nicotinamidaseFunctional Class: RThe phylogenetic pattern of COG1335 is A--kyqv-EBr-----ol---Number of proteins in this genome belonging to this COG is 1","***** PF00857 (Isochorismatase family) with a combined E-value of 1.2e-10. PF00857A 3-12 PF00857B 47-69 PF00857C 108-162","Residues 3-167 are 34% similar to a (PROTEIN HYDROLASE ISOCHORISMATASE) protein domain (PD002453) which is seen in O58727_PYRHO.Residues 5-169 are 24% similar to a (NICOTINAMIDASE, PUTATIVE) protein domain (PD181812) which is seen in O83694_TREPA.","","Thu Jun 14 13:09:01 MDT 2001","","Thu Jun 14 13:09:01 MDT 2001","Thu Jun 14 13:09:01 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:09:01 MDT 2001","Thu Jun 14 13:09:01 MDT 2001","","","Thu Dec 14 17:29:52 MST 2000","Thu Dec 14 17:28:33 MST 2000","Thu Dec 14 17:28:33 MST 2000","Tue Jun 19 15:22:22 MDT 2001","Tue Jun 19 15:22:22 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Thu Dec 14 17:28:33 MST 2000","Fri Jul 25 17:46:24 2008","-54% similar to PDB:1ILW Crystal Structure of Pyrazinamidase/Nicotinamidase of Pyrococcus horikoshii (E_value = 1.4E_20);-54% similar to PDB:1IM5 Crystal Structure of Pyrazinamidase of Pyrococcus horikoshii in Complex with Zinc (E_value = 1.4E_20);-44% similar to PDB:2H0R Structure of the Yeast Nicotinamidase Pnc1p (E_value = 8.7E_10);","","","No significant hits to the Pfam 11.0 database","Tue Jun 19 15:22:22 MDT 2001","34540475","","","","","","1","","6","PG0678" "PG0611","729735","731066","1332","ATGCGTTTCCAACATTATCTCATCTGTACGGCTGCCGTAGCGGCTTTGGCTGCGAATCCCCTTACGGGCCAATCGAATATGACCCTCGAAGAGTGCATAGACTATGCACGCCGGCACAGTTCGGCCGTGGCGCTGTCCGCTGCGGAACTGGAGCAGTCCAAGGCCGATTACCTTCAGGCCGTCGGCAATTTTCTGCCCCGTGTATCGGCCGGAACCGGTGCTTCGTGGAATTTCGGACGCGGATTGGATGCCGAGACGAATACCTACACCGACATCAACAGCTTCAACAATTCGTACAGCATACATGCCACGATGACCCTTTTCGACGGTTTGCAGAGTGTCTATCGACTGCGGATGGCGCATGCACGCCGGGAGGCTTCGCGCCTCTCCGTTCGCGAGCAGCAGGAGCTGGCAGCTCTCGGCACCACGGAGGCCTACTACGACCTCGTCTATGCGCGCCAAATGCAAGAGCTGGCCATGCAGAAGTACGAGGAGAGCAGCCGCCTCCACCGGCAGACGGCTCGAATGGAAGAGCTGGGGATGAAGAGTCGTCCCGATGTCCTCGAGATGCAGTCGCGAATGGCCGGTGACCGTTTGGCCCTGACTCAAGCGGACAATCAGTGCATCATCGCTCTGATCCGGCTCAAAGAAAAAATGAACTTCCCCATCGATGACGAACTCGTCGTAGACGATATGCCGGCTGACAGTCTCTCCGCCGACATGGCCGAATCGGACAGCTCGGCCGGCGTCTTCGCCCGTGCTGCCCATCATCATCCCGTCCTCCTCCGTGCCAAACTCGACGAGCAGGCTGCCACCGACCGTTTGCGAGCCGCGCGAGGTGCATTCCTGCCGAGTGTGTCGGTATCCGGAGGATGGAACACGGGATTCTCACGCTTTTTGAATGGATCGGACTATACGCCCTTCAGCGAGCAGTTTCGGAACCGTCGGGGGGAATACGTCAGTCTGAATCTGAGTATCCCCATCTTTTCGGGATTCAGCCTTGTGAGCCATCTGCGTCAGGCGCGTGCCGAACGCAGGGCGGCAATCGTCCGACGGGGCGAAGCGGAGCGCAGGCTCTACAGCGAGATCGCCCAAGCCATGGCCGACCGGGATGCCGCTCTGGCTTCCTACCGCCAGGCGAAGGAGCATACCGACGCCATGCAAACCGCTTACGAAGCCGTCTTGCAGCGTTATGAGGAGGGGCTGAATACGGCCATCGACCTGACCACTCAGGCCAATCGGCTCCTGGATGCCCGTGTGCAGCGACTGAGAGCGGCCATGACCTACCGGCTCAAATGCAAACTCATAGCCTATTACGGCTGCCTTTCGGAC","7.30","1.21","49713","MRFQHYLICTAAVAALAANPLTGQSNMTLEECIDYARRHSSAVALSAAELEQSKADYLQAVGNFLPRVSAGTGASWNFGRGLDAETNTYTDINSFNNSYSIHATMTLFDGLQSVYRLRMAHARREASRLSVREQQELAALGTTEAYYDLVYARQMQELAMQKYEESSRLHRQTARMEELGMKSRPDVLEMQSRMAGDRLALTQADNQCIIALIRLKEKMNFPIDDELVVDDMPADSLSADMAESDSSAGVFARAAHHHPVLLRAKLDEQAATDRLRAARGAFLPSVSVSGGWNTGFSRFLNGSDYTPFSEQFRNRRGEYVSLNLSIPIFSGFSLVSHLRQARAERRAAIVRRGEAERRLYSEIAQAMADRDAALASYRQAKEHTDAMQTAYEAVLQRYEEGLNTAIDLTTQANRLLDARVQRLRAAMTYRLKCKLIAYYGCLSD","729735 731066","TIGR ID: PG0679","conserved hypothetical protein; possible outer membrane protein","Outer membrane, Periplasm","Essentially identical to AAD51073 (AF175720) in Porphyromonas gingivalis strain W50. See also AF175719, the equivalent of PG1455. Significant similarity using gapped BLAST to CAA32414 (cyaE) in Bordetella pertussis and TolC, AAC43973, in Salmonella enteritidis. Residues 75-444 are 36% similar to APRF_PSEAE.","
InterPro
IPR003423
Family
Outer membrane efflux protein
PF02321\"[29-220]T\"[251-440]TOEP
noIPR
unintegrated
unintegrated
SSF56954\"[27-431]TSSF56954


","BeTs to 3 clades of COG1538COG name: Putative outer membrane proteinFunctional Class: SThe phylogenetic pattern of COG1538 is -----Q-c----uj------xNumber of proteins in this genome belonging to this COG is 4","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Dec 15 12:21:18 MST 2000","Thu Jan 18 15:47:32 MST 2001","Thu Dec 14 17:45:58 MST 2000","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 17-439 are 26% similar to PG1455, a predicted outer membrane protein.Weaker similarities include PG0083, a conserved hypothetical protein (possible alkaline secretion protease) and PG0490.","Tue Apr 3 11:31:49 MDT 2001","Tue Apr 3 11:31:49 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 29 to 220 (E-value = 3e-16) place PG0611 in the OEP family which is described as Outer membrane efflux protein (PF02321)Residues 251 to 440 (E-value = 7.2e-12) place PG0611 in the OEP family which is described as Outer membrane efflux protein (PF02321)","Tue Apr 3 11:31:49 MDT 2001","34540476","","Porphyromonas gingivalis polypeptides and nucleic acids, Patent: Australia (AU 98/01023)-PCT 10-DEC-1998, CSL Ltd; 45 Poplar Road;R&D; Parkville, Victoria; Australia. ","","Thu Dec 14 17:45:58 MST 2000","","1","","6","PG0679" "PG0612","731109","732359","1251","ATGGATAGAAAAATAGAAAAAAAGAAGACGCTCATCCCCCGTAAATATTATCCCTATGCAGGGGGAGCAATAGTAATACTCGCCTTGGCGGCGTGGGCCGTATTCGGCAATCACAGCACCAAGTTCAGAGCCGAACGCGCTCGGATCAGCATCGACAGCGTGCGCCAGGGCGAGTTCAACGACTATGTCCGCATCAACGGTCAGGTACAGCCCATCAACTCCATTCAGATCAGTGCCGTAGAGGGCGGAATGGTGGCGGAGAAAACCGTGGAGGAGGGTGCCATGGTGCACAAGGGCGACATCATCGTGAGGCTGACCAATCCGATGCTGAACCTGAATATCCTCGACAGCGAAGCGCAGCTTGCCGAGAAGCAGAACTTCCTGCGCAATACGCAGGTGACCATGGAGCAGGACAGGCTCAACCTGAAACGCGAAAGCCTCAACCTCCGACTGGATATAGAGCGAAAAAAGCGGAAAGCCGAGCAATACGCCCGACTCTATAAGGAAAAACTCTGTTCGCGCGAGGAGTATCTGCAAGCCGGCGAGGACTACCAATATGCCGTGGAGGGCAGCAGGCTCGTCATGGAACGGCAGCGGCAGGATTCGCTCTACAGGGGGATACAGGTGCGGCAGATGGAGGAGAGCCTCCATAATATGCGTCGCAATCTGGAGATGGTGCGCGCCCGTGTGGAAGACCTGAACGTGAAGGCACCGGCCGACGGTCAGTTGGGGCTTTTGGACGTGGAGATAGGGCAGACGGTAGGAGCCGGCAGTCGCATCGGACAGATCAACGTCCTGTCCGACTACAAGGTGGAGGCTATGATAGACGAGCACTATATCGATCGGGTCAAAGCCGGTCTGGCCGCTTCGTTCGAACGGCAGGGCAGGGACTTCTCCCTTCGCGTTCGGAAGGTATACCCCGAAGTTCGGGACAAGCAGTTCCGCACCGACTTCATATTCGACGGAGAGCGACCCGACAATATCCGCACAGGCCAAACTTACTACATCAATCTGCGCCTCGGACAGCCGTCCGAAGCCATCATGATCCCGCGCGGAGCCTTCTATCAGAATACCGGCGGACGATGGATATTCGTCGTTACGCCCGACGGCAAGCGAGCCGTTCGCCGGGACATCACGATTGCCCGTCAGAATCCGCAGTATTACGAAGTTACCTCCGGCCTGCATGCCGGCGAGATGGTCATCACCTCTTCGTATGATATGTTCGGCGATGCAGAAGAAATTATCCTGAAT","9.80","6.20","47886","MDRKIEKKKTLIPRKYYPYAGGAIVILALAAWAVFGNHSTKFRAERARISIDSVRQGEFNDYVRINGQVQPINSIQISAVEGGMVAEKTVEEGAMVHKGDIIVRLTNPMLNLNILDSEAQLAEKQNFLRNTQVTMEQDRLNLKRESLNLRLDIERKKRKAEQYARLYKEKLCSREEYLQAGEDYQYAVEGSRLVMERQRQDSLYRGIQVRQMEESLHNMRRNLEMVRARVEDLNVKAPADGQLGLLDVEIGQTVGAGSRIGQINVLSDYKVEAMIDEHYIDRVKAGLAASFERQGRDFSLRVRKVYPEVRDKQFRTDFIFDGERPDNIRTGQTYYINLRLGQPSEAIMIPRGAFYQNTGGRWIFVVTPDGKRAVRRDITIARQNPQYYEVTSGLHAGEMVITSSYDMFGDAEEIILN","731109 732359 [Shadowed by 806]","PG0612 may be a part of the ABC group including PG0618. See ABC Transporters Analysis.TIGR ID: PG0680","membrane permease","Cytoplasm, Periplasm, Inner membrane","Numerous hits including a hypothetical protein, H70326, in Aquifex aeolicus, HI0894 in Haemophilus influenzae and acriflavin resistance protein AcrE, A70361, in Aquifex aeolicus.This sequence is similar to BT1467.","
InterPro
IPR006143
Family
Secretion protein HlyD
PF00529\"[73-273]THlyD
TIGR01730\"[49-417]TRND_mfp
noIPR
unintegrated
unintegrated
SSF111369\"[60-303]TSSF111369


","BeTs to 9 clades of COG0845COG name: Membrane permeases, predicted cation efflux pumpsFunctional Class: RThe phylogenetic pattern of COG0845 is -----QvCEB-hUJ--ol--xNumber of proteins in this genome belonging to this COG is 6","***** IPB002215 (HlyD family secretion protein) with a combined E-value of 7.9e-08. IPB002215A 71-107 IPB002215B 234-268","Residues 269-401 are 29% similar to a (PROTEIN MEMBRANE RESISTANCE PRECURSOR) protein domain (PD000988) which is seen in O66917_AQUAE.Residues 115-313 are 23% similar to a (PROTEIN COILED COIL REPEAT FILAMENT HEPTAD PATTERN CHAIN) protein domain (PD000002) which is seen in O66644_AQUAE.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Thu Dec 4 15:34:44 2003","Thu Dec 4 15:34:44 2003","Thu Dec 4 15:34:44 2003","Thu Dec 14 17:57:09 MST 2000","Tue Apr 3 11:36:49 MDT 2001","Tue Apr 3 11:36:49 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1-406 are 24% similar to PG0257, a predicted membrane permease. Weaker similarities include:PG0492, cation efflux membrane fusion protein,PG1454, putative periplasmic protein,PG0056, cation efflux membrane fusion protein","Tue Apr 3 11:36:49 MDT 2001","Tue Apr 3 11:36:49 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Apr 3 11:36:49 MDT 2001","34540477","","","","","","1","","6","PG0680" "PG0612.1","732379","732891","513","GTGTACAAAAGAAACGATATGACTCTTATCCTTTTTCCTCTCTTGAAGAATCGAATCATGCGGATCTGTCTTATAAATTCATCCTTACAGAGTTGTAAAGAGGAATTTATACAACGAAATTCCTCACTGCAAGCCTGCGATTATAAATTTCGGAAGCGAAATTCCTCTCTGCAAGCTTGCAGGAAGCGATTTCGGCGAAAAAATTCCTATTTGCAGCTTGCAGGAAGCGATTTCGGCAAAAAAATTCCTATTTGCAGCTTGCAGGAAGCGATTTCGGCAAAAAAATTCCTGTTTGCAGCTTGCAAGAAGCAATTTCGGCAAGAAAATTCCTGTTTGCAGGCCTGCGGCTATAAATCTCGGAAGCAAAATTCCTCTCTGCAAGCTTGCAGCATGAAATTTCGACAAACGAAATTCCACACTGCAAGCCTGCAATATGAAATTTCGGCGAAAAAATTACTCGCTGCAAGCTTGCGGCCATTAATCTCGGAAGCAAAATTTGTCACTGCAAGCATG","","","19717","VYKRNDMTLILFPLLKNRIMRICLINSSLQSCKEEFIQRNSSLQACDYKFRKRNSSLQACRKRFRRKNSYLQLAGSDFGKKIPICSLQEAISAKKFLFAACKKQFRQENSCLQACGYKSRKQNSSLQACSMKFRQTKFHTASLQYEISAKKLLAASLRPLISEAKFVTASM","","NO TIGR ID corresponds to this gene.","hypothetical protein","Outer membrane, Periplasm","No significant hits.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Fri Dec 15 14:49:03 MST 2000","Fri Dec 15 14:49:03 MST 2000","Fri Dec 15 14:49:03 MST 2000","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs in P.gingivalis.","Fri Dec 15 14:49:03 MST 2000","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","6","" "PG0614","733012","735360","2349","ATGCGTACTTATTTCAAATTCCTCAGCCGCAACAAACTCTACACCTTCGTTACCATCGTAGGCTTTGCCCTCTCGCTCATATTCGTCTTGCTGCTTAGCTTCTATGTACGGCGCGAACAGCAAGCCGATCGTATTCATACCGATTACAAACGTATCTATCAGTACAATGTCGAGAGTAAGAATAACTGGAGCGGATTTATCTGTTGCTATCCTGCCGGAACGCTCATTCGCGAGCAGGTACCCGATGTGGAAGAGATATGCCGCATCAGCGAATACAACGACAAGGAATACATCTTTATCGGTGCCGACAAGCAAAACGGGTTGATTGCCTCCCATCTTTCGGTCGAATCCAACTTCTTTACTTTCTTCGACGGCTATAAACTCCTTGAGGGTGATCCCAAAACTGTCCTTTCCGAGCAGAACAGTGCCGTTATTTCCTCCGCGTTGGCAGCCCGTATCTTCGGTAACGTGTCTCCCATCGGGCAGGAGATTTCGTTTTTCGATTTTTCCAAAAACAAGCAGACCTTTCGGATCACGGGCATCATGGAGCCGATGCCGGATAACTGCCATATCAGACCGGCCGAACTCCTTTTCTATCAGGAGCCCAAAGAAAACAACTACAACAACGGCAACTATGCCCTCTATCTCAAAGCCCGCGAAGGAGCCGACCTCACGGCACAACTACCTGCCGTGCAGAAAGCCGTCCAAGGCAAAGATGTCATATTCGCTTTCGACGAGAAGGCCGAGGTGAAGCTCCATCCGCTGGAGAAATGCTATCCGGAGCCGCTATTCCCCAATGAATACGCCATGATGGTGCAAAAAGGAAATCCCGCCCGCACGCGCATACTCATTGCCATCACCCTTTTGGTCCTGATCATTGCCATCATCAGCTATATCAATCTGACCCTCGCGCAGGGAGGCAGCCGCGGCAATGAGGTCGCCCTCAGAAGGCTCTGGGGAAGTAGCCGTCTCGCCATCGTGCGCCGCCTCTGGTTCGAATCGCTTCTGCTCATCTTCCTGAGCACGCTGCTGGCCGTATTCGGCATGTTCGCCCTTGAACCCGTATTCGATCGCCTGTTCGATACGCATCTCTATCTGGCACGGCATATTTCGCTCACGCTCATCCTACTGCTAATCGGCTTCATGCTCCTGCTGAGCATCGTGTGTGCGGCCCTGCCCGCATGGTTCATATCGCGGTTTCGTCCGATCGAGGTGGTCAGCGGCAAGTTTCGCCGTGTGGTCAAAAGCAGCTTCTCGCAGATTATGGTCATTTCCCAGTATGCCATTACGATGATCCTGCTGAGCTGTACCATGGTAATGGCCGTGCAGATCGACTATATGACCAACTCCGACATGGGCTACGATTACAGGAACAAACTGATCATAGACGTTTTCGGACTGGATCCGCAGATCGTCAGTACGATGAGAACCGAAATAGCCAAAATCCCCGGCATAACGGGTATAGGCCTCACGCGTGGTACTCCGCTGAACGGAGGCAACAACAACTCTTCCGAATACCGTGGCAGGCCTCTCTCCATGCAGATTTTCTCCATAGACTCCGTGGCACTGAGCCTGTTCGATCTGAAGATGAAGCCCAACGGTCGCAAGGCCGACAAGCCCGATCGCACCCTCTATCTCAGCCGATCGGCCTACAACGATTTCGATGTAGCCAATCTGCCGGACGGTGTCATTCATTGGGGCAAAGCCGGTGAGTTCTATTATTGCGGCGATGCTCCCGAGGTTCACTTCGGCGGATTCAAGGAGCCGCATCCGAGCTATCTCTTCATCCCTTATCCCCAGTCATCCGCCTGGTCGTGGTCCGTACTGGTCGGCTATTCGGAAGGGGCCGATCCGGAGCAGTTGATTCAAAGCATACAGGCCGTTTACTCCCGTATTACGGGGCAGCCCTATACCGAAATCCTGCGTTCGGAAGACATCATAGCCTCGCACAGCGAGGAGGAACGTTCACTTAGCGGTTTTCTTCTCCTCTTCAGCATTCTGGCATTGGTCGGAACGGTAATGAGCGTCTTTGCCATGGCAGCTCTGCGCATTCGTCACAAGCAAAAAGAAATAGCCATCCGCAAGGTGGTGGGAGCACGCGAAGTGCAGATATTGCAGATTATCGGCCGCCGCAGCCTGTGGAATCTGCTCAACGCCTTCGCCGTGGCCACTCCCGTCTCCTATCTGGTCATGAACCGCTGGCTGCAAGGCTATACCTATCATGCCGATATGCCTTGGTGGGTATTCCCCGCATCGCTTCTCTTCGTCTCCGCAGTAGCCATGCTCTCCATGCTCAGCATGGCCATGAACGCTGCATCGAGCAACCCCGTCGACTACCTCAAAAACGAA","8.40","7.56","88593","MRTYFKFLSRNKLYTFVTIVGFALSLIFVLLLSFYVRREQQADRIHTDYKRIYQYNVESKNNWSGFICCYPAGTLIREQVPDVEEICRISEYNDKEYIFIGADKQNGLIASHLSVESNFFTFFDGYKLLEGDPKTVLSEQNSAVISSALAARIFGNVSPIGQEISFFDFSKNKQTFRITGIMEPMPDNCHIRPAELLFYQEPKENNYNNGNYALYLKAREGADLTAQLPAVQKAVQGKDVIFAFDEKAEVKLHPLEKCYPEPLFPNEYAMMVQKGNPARTRILIAITLLVLIIAIISYINLTLAQGGSRGNEVALRRLWGSSRLAIVRRLWFESLLLIFLSTLLAVFGMFALEPVFDRLFDTHLYLARHISLTLILLLIGFMLLLSIVCAALPAWFISRFRPIEVVSGKFRRVVKSSFSQIMVISQYAITMILLSCTMVMAVQIDYMTNSDMGYDYRNKLIIDVFGLDPQIVSTMRTEIAKIPGITGIGLTRGTPLNGGNNNSSEYRGRPLSMQIFSIDSVALSLFDLKMKPNGRKADKPDRTLYLSRSAYNDFDVANLPDGVIHWGKAGEFYYCGDAPEVHFGGFKEPHPSYLFIPYPQSSAWSWSVLVGYSEGADPEQLIQSIQAVYSRITGQPYTEILRSEDIIASHSEEERSLSGFLLLFSILALVGTVMSVFAMAALRIRHKQKEIAIRKVVGAREVQILQIIGRRSLWNLLNAFAVATPVSYLVMNRWLQGYTYHADMPWWVFPASLLFVSAVAMLSMLSMAMNAASSNPVDYLKNE","733012 735360","PG0614 belongs to a cluster of adjacent genes on the same strand (PG0614-PG0616) with significant similarity.See ABC Transporters Analysis.TIGR ID: PG0682","hypothetical protein (possible ABC transmembrane spanning domains)","Inner membrane, Cytoplasm","No significant hits.","
InterPro
IPR003838
Domain
Protein of unknown function DUF214, permase predicted
PF02687\"[211-402]T\"[605-776]TFtsX


","No hit to the COGs database.","***** BP03665 (PROTEIN TRANSMEMBRANE CONSERVED MEMBRA) with a combined E-value of 6.6e-06. BP03665B 667-721 BP03665C 756-783","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Fri Jun 15 23:02:14 MDT 2001","Fri Jun 15 23:02:14 MDT 2001","Fri Dec 15 14:58:56 MST 2000","Fri Dec 15 14:58:56 MST 2000","Tue Apr 3 11:42:01 MDT 2001","","yes","Fri Feb 20 15:41:32 MST 1998","Paralogs include PG0615 and PG0616, both immediately downstream of PG0614. Residues 1-783 of PG0614 shares 33% identity with PG0615, a possible permease. Residues 76-783 share 23% identity with PG0616, a hypothetical protein. Weaker similarities include PG1453, putative ABC transporter and PG0253, a conserved hypothetical protein (possible permease)","Tue Apr 3 11:42:01 MDT 2001","Tue Apr 3 11:42:01 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 211 to 402 (E-value = 5.9e-14) place PG0614 in the FtsX family which is described as Predicted permease (PF02687)Residues 605 to 776 (E-value = 3.5e-08) place PG0614 in the FtsX family which is described as Predicted permease (PF02687)","Tue Apr 3 11:42:01 MDT 2001","34540479","","","","","","1","","6","PG0682" "PG0615","735396","737759","2364","ATGCGTACTTATTTCAAATTCCTCAGCAGAAACAAACTCTACACCTTCGTTACCGTATTCGGTTTCTCCGTATCTCTGATGTTTGTCATCATATTAGGCATATACATCCGGAACGAAATGTCCGTGGATCGCTTCCACTCGAAGTCCGACCGCATCTATATGCTCTGCTCGGAGCAAGGTGCCAACTGGTCTAATCTGGCTCCCTCGTATATACAGAGCATCCTGCCCGACATCGAATCTTATTGTCGTGTGGCAAACAGAGATGTATACGTCCAAATGCCCTCCGGAGAGAGACTGAAAACCCCCATTCTGCTGGCGGACAGCACCTTTTTCACCCTCTTCGATTTCCGTCTCACGAATGGCATCCCCTCGCAAGTGCTCAACGACCGGAAGTCAGCCGTCATCTCTCGGGATTTTGCTCGCAAGCTCTTCGCCGATCAGGATCCCGTGGGTCAATCCGTATTTCTCTACAATTTTCCTCATACGATCACGGGCGTAATGGAGGGAATCCCGTCCAACAGCCAGTTCAAAAAGGTGGATATTGTGGTCAATTACCATTTTCTGTCCGATTTGAGTGGCGAGAATGCCTTCCGCTGGGGTAATTGCAGTTTTATGGCCTACTATCTGCTCAAAGCCGGAACCGACCTTGAGAGCAAAGCCCGAATCCTCGAAGAAACATTCAAGAAGGAGGCGTTTATGTGGCTCTATCATCAGGGTTTCCACAAAGAAGTACACTTCGTCTCTCTGCCGGATTGCTACTTCGATAGCAGGGTCGTGGAAGCCAATCTGGAGAATCGCGCGAACAATATGACCAAAGTGAAAGTGCTGACGGGTATCGTCCTGCTCATCCTCGTTATCGCCGTGCTCAATTATGTCAATATGACTGTCGCACAAGCCGGTTTCAGGGGCAAGGAATCGGCCATTCGCCGCCTGCTCGGCGGAAGCCGTTCGGGAGTCATCCGCAAGCTCCTGTTGGAGTCCCTCGTCATAACCCTGCTCACATTCATCGCAGGTCTGCTGTTGGCCTTTACCTTCGAGCCGTTTTTCAACCGCGTACTGGAAACGACTCTCGACCTCAAACATCAGTTTACTCCCTCCACCGTCATTGCCATAGCCCTCTTTGTCGTGCTGCTATCCTTCCTCTCGGGTATTCTGCCGGCTTGGATCATCTCGCGTTTCAAACCGATAGAAGTGGTCAAAGGCACGCTCCGCTACCGTATCAAAAGCACTTACTCCAAGGTGCTGATCATCTTCCAATATACCATTGCCATCGCTCTGCTGGTATGCAGCTTATTCATGATCCGTCAGACGCATTACCTCATTCATTCCGACTTGGGATTCCGCACGCGTGGCGTGCTCTGGATATCCAATACGGTGGATTCCGTTCCGAAGGGAATACTTCGTGCCGAATTGGAGAAGATCCCCGGTGTGGAGAAAGTATCGTATGCATGCGGTAATCCCATCCGGTATCTCAATAATATGTCGTTCACCAAAGATGGAGTGAACGTGAGTACTTGGGAAATGGTGGTGGACTCCGTCTTCTTCGATTTCTTCGAGATCAGTCCGATACCCCTGACGGACGAACCGGTGGAGACCTTTTTCGACAGGGAAAAGATGCGTGCCGCCCGAATTATTCCCGAATGGGGCAATATGAAGATGATCAACGCCGTCCGGCCCGATCCCGAGACCGGCATATTTACCCAAGGCGATGACGATAACGACGAGGTAAAGTATCGTATGGTGGGACGTATCCCCGACCTGAAATACAAACCCCTCAACATGGAACAGTCTCCCCTGCAGATACGTCCTCTCTATGCCCGCGAACAACCATGGGTAACGCTCGTAAGGGCCTCGGACGAGGCCGACAAATCTGCCGTCCTTGCTGCCGTGAGCGACACTTATAAGCGAGTGACCGGAGCCGAGGACATAGAACCCCTTTGGGCCGAAGACATCATTCTGGACCGGTACAAGTCGCAGACCAATCTGTCGCAGCTCATTTCCGCCTTTGCCCTGCTCACCGTCCTCATTATGGTGATGGGCGTCTTCGCCATGAGCCTCTATATGATCAAGCAGAAAGAGAAAGAGATCGCCCTTAGAAAGGTCAATGGTGCCACGGTGGCTACCATACTGGCCATGCTCAATACCCAGTCGCTCCGCCGTTTCGGTATAGCTCTGCTCATAGCTCTGCCTGTATCGTGGTGGGCTATGGATCGCTGGCTCCAGACATTCGCTTTCCACATCAGGCTGGACTGGTGGGTATTTGTCGTTGCAGCCCTCATCGTCTTGCTGCTATCGCTCGTGAGCACATCGCTTCAGAGCTGGCGGGCAGCCTGCGCCAATCCCGTGGATTACCTCAAAAACGAA","9.50","12.13","89912","MRTYFKFLSRNKLYTFVTVFGFSVSLMFVIILGIYIRNEMSVDRFHSKSDRIYMLCSEQGANWSNLAPSYIQSILPDIESYCRVANRDVYVQMPSGERLKTPILLADSTFFTLFDFRLTNGIPSQVLNDRKSAVISRDFARKLFADQDPVGQSVFLYNFPHTITGVMEGIPSNSQFKKVDIVVNYHFLSDLSGENAFRWGNCSFMAYYLLKAGTDLESKARILEETFKKEAFMWLYHQGFHKEVHFVSLPDCYFDSRVVEANLENRANNMTKVKVLTGIVLLILVIAVLNYVNMTVAQAGFRGKESAIRRLLGGSRSGVIRKLLLESLVITLLTFIAGLLLAFTFEPFFNRVLETTLDLKHQFTPSTVIAIALFVVLLSFLSGILPAWIISRFKPIEVVKGTLRYRIKSTYSKVLIIFQYTIAIALLVCSLFMIRQTHYLIHSDLGFRTRGVLWISNTVDSVPKGILRAELEKIPGVEKVSYACGNPIRYLNNMSFTKDGVNVSTWEMVVDSVFFDFFEISPIPLTDEPVETFFDREKMRAARIIPEWGNMKMINAVRPDPETGIFTQGDDDNDEVKYRMVGRIPDLKYKPLNMEQSPLQIRPLYAREQPWVTLVRASDEADKSAVLAAVSDTYKRVTGAEDIEPLWAEDIILDRYKSQTNLSQLISAFALLTVLIMVMGVFAMSLYMIKQKEKEIALRKVNGATVATILAMLNTQSLRRFGIALLIALPVSWWAMDRWLQTFAFHIRLDWWVFVVAALIVLLLSLVSTSLQSWRAACANPVDYLKNE","735150 737759","PG0615 belongs to a cluster of adjacent genes on the same strand (PG0614-PG0616) with significant similarity.PG0615 may be a part of the ABC group including PG618.See ABC Transporters Analysis.TIGR ID: PG0683. Reported by Chen et al., 2004, to be highly divergent in ATCC 33277.","possible permease (ABC transmembrane spanning domains)","Inner membrane, Cytoplasm","The carboxyl half of the protein shows a weak similarity to a ATP-binding/permease fusion ABC transporter in Pseudomonas aeruginosa (gbAAG05778.1).","
InterPro
IPR003838
Domain
Protein of unknown function DUF214, permase predicted
PF02687\"[205-395]T\"[610-781]TFtsX


","BeTs to 6 clades of COG0577COG name: Predicted permeaseFunctional Class: RThe phylogenetic pattern of COG0577 is AMt--QVcEBRHuj--OLinxNumber of proteins in this genome belonging to this COG is 8","***** BP03665 (PROTEIN TRANSMEMBRANE CONSERVED MEMBRA) with a combined E-value of 4.1e-09. BP03665B 672-726 BP03665C 761-788","No significant hit to the ProDom database.","","Thu Jun 14 13:09:49 MDT 2001","","Thu Jun 14 13:09:49 MDT 2001","Thu Jun 14 13:09:49 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:09:49 MDT 2001","Thu Jun 14 13:09:49 MDT 2001","","Tue Feb 22 13:57:38 2005","Fri Jun 15 23:00:33 MDT 2001","Tue Feb 22 13:57:38 2005","Fri Dec 15 15:06:47 MST 2000","Fri Jun 15 22:47:41 MDT 2001","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1-788 share 33% and 22% identity with PG0614 and PG0616 respectively both hypothetical proteins. Shorter segments also show similarity: residues 107-397 are 23% similar to PG0253, a conserved hypothetical protein(possible permease) and residues 60-400 are 22% similar to PG1453, a putative ABC transporter.","Tue Jun 19 15:19:18 MDT 2001","Tue Apr 3 12:13:36 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 205 to 395 (E-value = 7.4e-18) place PG0615 in the FtsX family which is described as Predicted permease (PF02687)Residues 623 to 781 (E-value = 1.3e-09) place PG0615 in the FtsX family which is described as Predicted permease (PF02687)","Tue Feb 22 13:57:38 2005","34540480","","Chen T, Hosogi Y, Nishikawa K, Abbey K, Fleischmann RD, Walling J, Duncan MJ.Comparative whole-genome analysis of virulent and avirulent strains of Porphyromonas gingivalis.J Bacteriol. 2004 Aug;186(16):5473-9.PMID: 15292149","","Tue Feb 22 13:57:38 2005","","1","","6","PG0683" "PG0616","737789","740161","2373","ATGTTACCTCTCAAACTTGCTGCTCGCCGTCTCTTCCGACAGGGCGAACACAGTATCAGCAAACTCCTGACGCTTACGCTCGGACTTTCCGTCAGCGTGCTTCTGCTCTCTATCGTCATCTATCAGCGAAGCTACGAACGGGATTTCCCCCATCATGATCGCATCTGCATCGTCAAGACGCATGGAACGCGCCAAAGTCAGGAGGGGGATAAACCGGAAGAACTCGACTTCTCTCAGGTCAGCGGAGGCGTTGCCCCTGCCATTCAGGAGGAAATACCGGGTGTGGAACTGGCTACCCGAACGACTCTGTATGGCACCTCGAAGATGATACTCGAAGACAACAAAACCTACGAGACCAAGACGCTGCTGGCCGAACCGGCTTTCCTCGACATGTTCGGGGTAGAACTCATCGCCGGCGTCCGGGATAGTGCCTTGCGCGACAATATGACCTGCCTCATCTCCGAAAGTTTGGCCCGGAAGATGGGGGGCGATGTCCTGGGCAAACGGTTGCGACCGGCAGAAAGCAAATCGGACCGAGCCATCACGATCGGAGGTGTATTCGAGGATCTGCCCCACAACAGCAGCATCCAAGCCGATATGCTCCTGCCCATTACGTGGATGCCGGCCGAGAGCCTGAACAACTGGATCGGCAACGACCGCTACATAGCCTACGTCCGTCTGCGTCCCGGTGTGTCGCCCGAGAGCCTCGACGAAGCTCTCCTGGAGATGCAAAAGCGGCATCAGGATATGGAAGTCTTCCGCAAAGCAGGAGTGGAATTGCACTATTCCCTTACGCCCTTCAACCGCTTGCGTCTGGAAGATCCCACTTTGGTCAATATGCTGCGAATCCAGCAGATCGTGGCCATAGCGGTGCTGCTTATTTCGCTGCTGAACTACGTACTCATGACCCTCGCCTCCATGGTCAACCGCCGGCGTGTAGCTGCCATTCGCAAGTGTTACGGAGCCATGCCCGTGCAGATACAGGGTACGATGATCTGGGAGACCTTCCTCTATCTCTTCCTCTCTCTCGTGCTGGCCCTCCTGACCCTTATCCTCTTCCGCAAGCCGATGGAGGCTCTGATCGAAACTCCGCTGCTGCATCTGATCTCGTGGCGCGTAGCCGCAGCCTTGGCCGGAGTATTGGCCATGGCTACTTTCTTCATGGGATGGATCCCCGGCTACTCCCTGTCCCGTACACCGGTGATGAATATCTTTCGCAAGTCGGTAGCACACAATCGGCTCTGGAAGCTGGGACTGCTGGCTGTAGAATTTGTGGCGGCCACTTTCCTCTTCGGCCTTTTGGCTATCACCGGTCTGCAATACCGGCACATGATAGGGCAGGATGCCGGATACAAAGCCGCCGGACTGTATTATGTCCCCATCGAGTCGCTGGATCAGCAGCAACTCCCTGTCGTGATCGAAAAGCTCAAGGCACTGCCCGAAGTGGAAGGCTACACGCTGACGACCGCCTTGCCGGCTTCTTCCGGCCAGAGTGGAGATAACCTTATCGACCCCGTTACGGATCGTGAGCTGATCAATGTGGCCGACCTCTTCTACGTGGACGAACACTATCTGAAAGTCTACGACATCGAGTTGCTCGAAGGGAAAAACTTCGACGCTGCCACCGAAAAGGACAGAGAGATCATGCTCAGCAAGAAAGCGGCTACCGAATTGGCTCGGCTGATGAATTGGAAAGACGGTGTCATCGGCAAGAATATCATCCTGACTTCCTTCGGGCGAGTGGTGATTCGCGGTGTGTACGACGATCTCATGCTCCGCCGTCAGCACCTGAGCCCTTACCCCGAAAAGCTCCCTTCCGCCATCGTCTATGGGGACGATTGGCTGCATTATCTGACGATCCGCCTTCGCCATGACGATGCCCGGCTCCTCCATCGCGTGAATGGCATCCTCTCCGAAGCCGATCCCTACAAGGAGACTTCTTTCCTCGGTGTGGAGATGGAGCTTCTCAGTCGCTTCGAGGCAGCCAAGACTTTTCGCAATACGATCCTCTTCGGCAGTGTCGTGGCTATCCTGATCGCTCTGATCGGGCTGGTCGGCTATGTGAATACGGAGGTCAATCGCCGTCGCAAGGAGCTGGCCATTCGCAAGATCAACGGAGCCGGAGAGGGCGACATCTTGCGACTCTTCCTCCGCTCCATTTTTCGGCTCAGCCTGCCGAGTGTGCTTGCCGGACTTTTCGTCGCTTATCTCTTCGGTCGGAACTGGCTGGAGAAGTTCAGCTATCGAATCGAATTGAACGGCCGGATTTTCCTCCTTGTAGGTCTGTTCGTCCTCCTGATTATTGCATTGGCCGTTGTCATCAACCTCCGGCGCATAGCTCGCCGCAACCCTGTCAATGAACTCCGATACGAA","9.60","10.54","89356","MLPLKLAARRLFRQGEHSISKLLTLTLGLSVSVLLLSIVIYQRSYERDFPHHDRICIVKTHGTRQSQEGDKPEELDFSQVSGGVAPAIQEEIPGVELATRTTLYGTSKMILEDNKTYETKTLLAEPAFLDMFGVELIAGVRDSALRDNMTCLISESLARKMGGDVLGKRLRPAESKSDRAITIGGVFEDLPHNSSIQADMLLPITWMPAESLNNWIGNDRYIAYVRLRPGVSPESLDEALLEMQKRHQDMEVFRKAGVELHYSLTPFNRLRLEDPTLVNMLRIQQIVAIAVLLISLLNYVLMTLASMVNRRRVAAIRKCYGAMPVQIQGTMIWETFLYLFLSLVLALLTLILFRKPMEALIETPLLHLISWRVAAALAGVLAMATFFMGWIPGYSLSRTPVMNIFRKSVAHNRLWKLGLLAVEFVAATFLFGLLAITGLQYRHMIGQDAGYKAAGLYYVPIESLDQQQLPVVIEKLKALPEVEGYTLTTALPASSGQSGDNLIDPVTDRELINVADLFYVDEHYLKVYDIELLEGKNFDAATEKDREIMLSKKAATELARLMNWKDGVIGKNIILTSFGRVVIRGVYDDLMLRRQHLSPYPEKLPSAIVYGDDWLHYLTIRLRHDDARLLHRVNGILSEADPYKETSFLGVEMELLSRFEAAKTFRNTILFGSVVAILIALIGLVGYVNTEVNRRRKELAIRKINGAGEGDILRLFLRSIFRLSLPSVLAGLFVAYLFGRNWLEKFSYRIELNGRIFLLVGLFVLLIIALAVVINLRRIARRNPVNELRYE","737789 740161 [Shorter 811 2367 99]","PG0616 belongs to a cluster of adjacent genes on the same strand (PG0614-PG0616) with significant similarity.See ABC Transporters Analysis.TIGR ID: PG0684","hypothetical protein/possible ABC element with MSD domain","Inner membrane, Cytoplasm","No significant hits.","
InterPro
IPR003838
Domain
Protein of unknown function DUF214, permase predicted
PF02687\"[220-401]T\"[615-784]TFtsX


","BeTs to 3 clades of COG0577COG name: Predicted permeaseFunctional Class: RThe phylogenetic pattern of COG0577 is AMt--QVcEBRHuj--OLinxNumber of proteins in this genome belonging to this COG is 8","***** BP03665 (PROTEIN TRANSMEMBRANE CONSERVED MEMBRA) with a combined E-value of 1.9e-07. BP03665B 675-729 BP03665C 764-791","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Fri Jun 15 22:46:47 MDT 2001","Sat Jun 2 17:28:30 MDT 2001","Fri Dec 15 15:12:51 MST 2000","Fri Dec 15 15:12:51 MST 2000","Tue Apr 3 12:16:37 MDT 2001","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 88-791 are 23% similar to PG0614, a hypothetical protein and residues 18-791 are 22% similar to PG0615, possible permease,both adjacent upstream neighbors.","Tue Apr 3 12:20:20 MDT 2001","Tue Apr 3 12:16:37 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 220 to 401 (E-value = 5.5e-06) place PG0616 in the FtsX family which is described as Predicted permease (PF02687)Residues 615 to 784 (E-value = 7.7e-13) place PG0616 in the FtsX family which is described as Predicted permease (PF02687)","Tue Apr 3 12:16:37 MDT 2001","34540481","","","","","","1","","6","PG0684" "PG0618","740257","740913","657","ATGATTGAAATCAGCAACCTCACCAAGGTTTTCAGAACAGAAGAAATAGAGACGGTAGCCCTCGATGGCGTATCGCTCAAAGTGGACAAAGGCGAATTTATCGCCATAATGGGGCCTTCGGGATGCGGTAAGTCCACTCTGCTCAATATCCTCGGCCTTCTCGACAATCCCACTTCCGGTATCTACAAGCTCGATGGGGCAGAAGTGGGCAACCTCCGGGAAAAAGACAGGACTGCCGTCCGTAAGGGCAATATCGGCTTCGTATTCCAGAGCTTCAACCTCATCGAAGAGATGACGGTAAGCGAGAACGTGGAGTTGCCGCTCGTCTATCTGGGTGTGAAGGCCTCCGAGCGGAAAGAGCGAGTGGAGGAGGCACTGCGCAAGATGAGCATCAGCCACCGGGCCGGCCACTTCCCCAATCAGCTCTCCGGAGGACAACAGCAGCGCGTGGCTATCGCCCGTGCCGTGGTGGCCAATCCGAAGCTCATCCTCGCCGATGAACCCACGGGTAACCTCGACTCCAAAAACGGAGCCGATGTCATGGAACTGCTCAGAGGTCTCAATCGCGAAGGTGCAACCATCGTCATGGTGACGCACTCCGAGCACGATGCACGTAGTGCCGGCCGCATCATCAATCTGTTCGACGGTAAGATTCGC","7.00","0.00","23882","MIEISNLTKVFRTEEIETVALDGVSLKVDKGEFIAIMGPSGCGKSTLLNILGLLDNPTSGIYKLDGAEVGNLREKDRTAVRKGNIGFVFQSFNLIEEMTVSENVELPLVYLGVKASERKERVEEALRKMSISHRAGHFPNQLSGGQQQRVAIARAVVANPKLILADEPTGNLDSKNGADVMELLRGLNREGATIVMVTHSEHDARSAGRIINLFDGKIR","740257 740913 [Shorter 813 606 99]","See ABC Transporters Analysis.TIGR ID: PG0685","ABC transport component, ATPase component","Cytoplasm, Inner membrane","Numerous significant hits to ATP-binding and ABC transporter proteins in many prokaryotes including 46% similarity to a protein in Archaeoglobus fulgidus (NP_069851), 46% similarity to a protein in Methanococcus jannaschii (AAB99520) and 46% similarity to a protein in Vibrio cholerae (AAF94722).","
InterPro
IPR003439
Domain
ABC transporter related
PD000006\"[141-184]TABC_transporter
PF00005\"[31-216]TABC_tran
PS00211\"[142-156]TABC_TRANSPORTER_1
PS50893\"[2-219]TABC_TRANSPORTER_2
InterPro
IPR003593
Domain
AAA+ ATPase, core
SM00382\"[30-219]TAAA
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[1-218]TG3DSA:3.40.50.300
PTHR19222\"[2-219]TPTHR19222
PTHR19222:SF32\"[2-219]TPTHR19222:SF32
SSF52540\"[1-218]TSSF52540


","BeTs to 15 clades of COG1136COG name: ABC-type (unclassified) transport system, ATPase componentFunctional Class: RThe phylogenetic pattern of COG1136 is AMt--QVCEBRHUJGPOLinxNumber of proteins in this genome belonging to this COG is 3","***** IPB001617 (ABC transporters family) with a combined E-value of 7.3e-20. IPB001617A 36-51 IPB001617B 143-154","Residues 74-139 are 43% similar to a (ATP-BINDING TRANSPORT PROTEIN TRANSPORTER) protein domain (PD007972) which is seen in O34392_BACSU.Residues 21-72 are 59% similar to a (ATP-BINDING TRANSPORT PROTEIN TRANSPORTER ABC) protein domain (PD000005) which is seen in O29244_ARCFU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Fri Jun 15 22:45:55 MDT 2001","Wed Mar 14 14:22:01 MST 2001","Fri Dec 15 15:59:35 MST 2000","Fri Dec 15 15:59:35 MST 2000","Wed Mar 14 14:22:01 MST 2001","Wed Mar 14 14:22:01 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG0618 is 24-44% similar to the following: PG0233 ABC transporter ATPase PG0254 ABC transporter/ATP-binding protein PG0566 ABC transporter protein PG0584 ferric enterobactin transport protein/iron(III) dic... PG0605 ABC transport system component; ATP-binding protein PG0844 ABC transporter PG0903 ABC transporter ATP binding protein PG0921 oligopeptide ABC transporter PG1048 ABC transporter, ATP-binding protein PG1049 ABC transporter protein PG1084 ABC transporter ATP-binding protein PG1211 ABC transporter (exact function unknown) PG1451 ABC transporter, ATP-binding protein,PG1477 ABC transporter ATPasePG1497 ABC transporter protein, MSD-NBD fusion protein PG1533 ABC transporter PG1917 cell-division ATP-binding protein PG1923 ABC transporter, ATP-binding protein PG1929 ABC transporter protein,NBD-NBD fusion protein.","Tue Apr 3 12:36:40 MDT 2001","Wed Mar 14 14:22:01 MST 2001","-63% similar to PDB:1F3O Crystal structure of MJ0796 ATP-binding cassette (E_value = 8.7E_49);-63% similar to PDB:1L2T Dimeric Structure of MJ0796, a Bacterial ABC Transporter Cassette (E_value = 1.9E_48);-53% similar to PDB:1OXS Crystal structure of GlcV, the ABC-ATPase of the glucose ABC transporter from Sulfolobus solfataricus (E_value = 1.9E_27);-53% similar to PDB:1OXT Crystal structure of GlcV, the ABC-ATPase of the glucose ABC transporter from Sulfolobus solfataricus (E_value = 1.9E_27);-53% similar to PDB:1OXU Crystal structure of GlcV, the ABC-ATPase of the glucose ABC transporter from Sulfolobus solfataricus (E_value = 1.9E_27);","","","Residues 31 to 216 (E-value = 2.6e-60) place PG0618 in the ABC_tran family which is described as ABC transporter (PF00005)","Wed Mar 14 14:22:01 MST 2001","34540482","","","","","","1","","6","PG0685" "PG0620","742775","741225","1551","ATGCAGGTCATAAAAACAAATGAAACTTTTGACAGCCTCGACAAAAGTAAGTTGGAGCGTATGCTCGACATCAAAGAGGCTCATCGCGAAGGTCATCTGACACTTGAAGAGGCCAAGGAGCGTATGAAAAAAGAAGTGGGTTCCATCTCGCCCGAAGAGTTTGCCGCAGCAGAGCAACTCTTCAAAGAACGTGATCAGGACGAATGCCAAAACGAAGACGTACGGACAATGCTACAGCTGTTCGAAGGCCTGATAAATCCCATTCGTCCCGATTTACCTTTCGGACACCCCATCGATGCCTATCTGCGCGAAAACGATAAGGCCAAAGAACTACTCGATCAGGCGGATGCCCTACTGGAGCGCACTTTTATCCCCAATCCATGGATAGAACTGATGGAGACGCTTATGGGATATAAGCTACACTTTGCTCGCAAACAAAACCAACTCTATTCGACACTGGAGCAGAAAGGATTCGACCGCCCCTCCACTACGATGTGGACTTATGACGATCATATCCGCGACGAGATGAACAAAGCCATGAGCCTACTGCGCGAAAAAGACTACGACTCCTTCCCTGCAGCATACAAAGAGATGGCTATCGTTCTGCGTGACCTGATGGAAAAAGAAGAGCTTATCCTTTATCCAACCTCTCTGAAGCTCATTTCCGACAAAGAGTTCGAAGAAATGAAACATGGCGATCGGGAAATAGGCTTCTTCCTTATCGACATGCCGGAATTAGATGCACCGGCCAAGCAATCAAAAGAAGCCCACGGCCAATCATTTATGGCAGAACTGGGAGCCTTACTTGCCAAACATGGTATGGGGACAGGCGGACAAGACGACAAGGCGATACTGGATGTAGCCGAAGGAAAGCTGACTTTGGAGCAGATCAATCTGCTTTTCCGTCATCTCCCTGTGGATATTTCGTTCGTGGACGAAAACGAGCTGGTTTGTTTCTATACGGACACAAAGCACAGAGTATTCCCCAGAAGCAAGGGGGTGATCGGCCGAGAAGTACGCAACTGCCATCCGCCCAAGAGCGTTCATATAGTAGAGGAGATAATCGATAAGTTCCGACGTGGCGAACAGGATCGCGCAGAATTCTGGATCAATAAGCCCGGAGTCTTCATCTACATTGTCTATGTGGCCATCAGAGACGCCGACGGGCGTTTCCGCGGTGTGATGGAAATGATGCAAGACTGCACACGGATCCGTAGTCTTGAAGGCTCGCGTACACTTCTTACTTGGGACGAAGAGCAAAGTCCGGCACAAGGATCGAAAGAAAGCGAATCCGATACTGCCGGAGAAGACGGCATTCGGCCGGACACGAAGCTGAAGAGTCTCTTGCAGCGGTATCCGCAACTGATGGATGATTTGCCAACGATCAGTTCCAAGTTCACCCTCCTTCGTTCTCCGATGGCCAAAGTAATTCTTCCTGTTGCCACCATTAAAATGATGAGCGAACGCGCCGACATTCCGTCGGATATGCTCATCGGCAAACTGGAATCGCTCATCGCTTCGTACAATAAACCGGATCGATCGGAAGAGAAA","5.00","-21.21","59569","MQVIKTNETFDSLDKSKLERMLDIKEAHREGHLTLEEAKERMKKEVGSISPEEFAAAEQLFKERDQDECQNEDVRTMLQLFEGLINPIRPDLPFGHPIDAYLRENDKAKELLDQADALLERTFIPNPWIELMETLMGYKLHFARKQNQLYSTLEQKGFDRPSTTMWTYDDHIRDEMNKAMSLLREKDYDSFPAAYKEMAIVLRDLMEKEELILYPTSLKLISDKEFEEMKHGDREIGFFLIDMPELDAPAKQSKEAHGQSFMAELGALLAKHGMGTGGQDDKAILDVAEGKLTLEQINLLFRHLPVDISFVDENELVCFYTDTKHRVFPRSKGVIGREVRNCHPPKSVHIVEEIIDKFRRGEQDRAEFWINKPGVFIYIVYVAIRDADGRFRGVMEMMQDCTRIRSLEGSRTLLTWDEEQSPAQGSKESESDTAGEDGIRPDTKLKSLLQRYPQLMDDLPTISSKFTLLRSPMAKVILPVATIKMMSERADIPSDMLIGKLESLIASYNKPDRSEEK","742805 741225","TIGR ID: PG0686","conserved hypothetical protein","Cytoplasm","PG0620 shows 28% similarity using gapped BLAST to hypothetical protein in Pyrococcus abyssi (CAB49904), 32% similarity to a predicted cds in Archaeoglobus fulgidus (AAB91065) and the carboxyl portion shows 44% similarity to AAD36084 in Thermotoga maritima.","
InterPro
IPR012312
Domain
Hemerythrin HHE cation binding region
PF01814\"[97-152]T\"[161-216]THemerythrin
noIPR
unintegrated
unintegrated
SSF55785\"[293-394]TSSF55785


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 14-416 are 31% similar to a (HYPOTHETICAL 50.6 KD PROTEIN) protein domain (PD140902) which is seen in O30067_ARCFU.","","Thu Jun 14 13:10:38 MDT 2001","","Thu Jun 14 13:10:38 MDT 2001","Thu Jun 14 13:10:38 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:10:38 MDT 2001","Thu Jun 14 13:10:38 MDT 2001","","","Fri Dec 15 16:16:22 MST 2000","Tue Jun 19 15:11:03 MDT 2001","Fri Dec 15 16:16:22 MST 2000","","Tue Jun 19 15:07:49 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Fri Dec 15 16:16:22 MST 2000","Thu Jun 14 13:10:38 MDT 2001","-49% similar to PDB:2BOL CRYSTAL STRUCTURE AND ASSEMBLY OF TSP36, A METAZOAN SMALL HEAT SHOCK PROTEIN (E_value = );-45% similar to PDB:1B70 PHENYLALANYL TRNA SYNTHETASE COMPLEXED WITH PHENYLALANINE (E_value = );-45% similar to PDB:1B7Y PHENYLALANYL TRNA SYNTHETASE COMPLEXED WITH PHENYLALANINYL-ADENYLATE (E_value = );-45% similar to PDB:1EIY THE CRYSTAL STRUCTURE OF PHENYLALANYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH COGNATE TRNAPHE (E_value = );-45% similar to PDB:1JJC Crystal structure at 2.6A resolution of phenylalanyl-tRNA synthetase complexed with phenylalanyl-adenylate in the presence of manganese (E_value = );","","","No significant hits to the Pfam 11.0 database","Tue Jun 19 15:07:49 MDT 2001","34540483","","","","","","1","","","PG0686" "PG0621","744614","743262","1353","ATGGAAATCAAAGAAATGGTGAGCCTTGCACGCAAGGCTCAGAAGGAGTATCAAGCTACCCATAACCAAGAAGCAGTTGACAACATTTGCCGAGCTGCAGCAAAAGTTATTTATGAAAATGCAGCTATTCTGGCTCGCGAAGCAGTAGACGAAACCGGCATGGGCGTTTACGAACACAAAGTGGCCAAGAATCAAGGCAAATCCAAAGGTGTTTGGTACAACCTCCACAATAAAAAATCGATTGGTATCCTCAATATAGACGAGCGTACCGGTATGATCGAGATTGCAAAGCCTATCGGAGTTGTAGGAGCCGTAACGCCGACGACCAACCCGATCGTTACTCCGATGAGCAATATCATCTTTGCTCTTAAGACCTGCAATGCCATCATTATTGCCCCCCACCCCAGATCCAAAAAATGCTCTGCACACGCAGTTCGTCTGATCAAAGAAGCTATCGCTCCGTTCAACGTACCGGAAGGTATGGTTCAGATCATCGAAGAACCCAGCATCGAGAAGACGCAGGAACTCATGGGCGCCGTAGACGTAGTAGTTGCTACGGGTGGTATGGGCATGGTGAAGTCTGCATATTCTTCAGGAAAGCCTTCTTTCGGTGTTGGAGCCGGTAACGTTCAGGTGATCGTGGATAGCAACATCGATTTCGAAGCTGCTGCAGAAAAAATCATCACCGGTCGTGCTTTCGACAACGGTATCATCTGCTCAGGCGAACAGAGCATCATCTACAACGAGGCTGACAAGGAAGCAGTTTTCACAGCATTCCGCAACCACGGTGCATATTTCTGTGACGAAGCCGAAGGAGATCGGGCTCGTGCAGCTATCTTCGAAAATGGAGCCATCGCGAAAGATGTAGTAGGTCAGAGCGTTGCCTTCATTGCCAAGAAAGCAAACATCAATATCCCCGAGGGTACCCGTATTCTCGTTGTTGAAGCTCGCGGCGTAGGAGCAGAAGACGTTATCTGTAAGGAAAAGATGTGTCCCGTAATGTGCGCCCTCAGCTACAAGCACTTCGAAGAAGGTGTAGAAATCGCACGTACGAACCTCGCCAACGAAGGTAACGGCCACACCTGTGCTATCCACTCCAACAATCAGGCACACATCATCCTCGCAGGATCAGAGCTGACGGTATCTCGTATCGTAGTGAATGCTCCGAGTGCCACTACAGCAGGCGGTCACATCCAAAACGGTCTTGCCGTAACCAATACGCTCGGATGCGGATCATGGGGTAATAACTCTATCTCCGAGAACTTCACTTACAAGCACCTCCTCAACATTTCACGCATCGCACCGTTGAATTCAAGCATTCACATCCCCGATGACAAAGAAATCTGGGAACTC","6.40","-4.31","48310","MEIKEMVSLARKAQKEYQATHNQEAVDNICRAAAKVIYENAAILAREAVDETGMGVYEHKVAKNQGKSKGVWYNLHNKKSIGILNIDERTGMIEIAKPIGVVGAVTPTTNPIVTPMSNIIFALKTCNAIIIAPHPRSKKCSAHAVRLIKEAIAPFNVPEGMVQIIEEPSIEKTQELMGAVDVVVATGGMGMVKSAYSSGKPSFGVGAGNVQVIVDSNIDFEAAAEKIITGRAFDNGIICSGEQSIIYNEADKEAVFTAFRNHGAYFCDEAEGDRARAAIFENGAIAKDVVGQSVAFIAKKANINIPEGTRILVVEARGVGAEDVICKEKMCPVMCALSYKHFEEGVEIARTNLANEGNGHTCAIHSNNQAHIILAGSELTVSRIVVNAPSATTAGGHIQNGLAVTNTLGCGSWGNNSISENFTYKHLLNISRIAPLNSSIHIPDDKEIWEL","744614 743262","MD catalytic activity: succinate semialdehyde + NAD(P)(+) + H(2)O = succinate + NAD(P)H. Similarity: to the N-terminal of C.acetobutylicum or E.coli multifuctional alcohol dehydrogenase (ADHE). Act confirmed in 33277 for glutamate catabolism to butyrate. (Takahashi et al 2000).TIGR ID: PG0687","aldehyde dehydrogenase (succinate semialdehyde dehydrogenase (NADP+))","Cytoplasm","Using gapped BLAST PG0621 shows numerous hits to dehydrogenase proteins including 48% similarity to a CoA-dependent succinate semialdehyde dehydrogenase protein in Clostridium kluyveri (AAA92347), 39% similarity to an alcohol dehydrogenase in Escherichia coli (AAC74323) and 39% similarity to an aldehyde-alcohol dehydrogenase in Clostridium acetobutylicum (AAD04638).","
InterPro
IPR015590
Domain
Aldehyde Dehydrogenase_
PTHR11699\"[10-387]TAldehyde_dehyd
noIPR
unintegrated
unintegrated
G3DSA:3.40.605.10\"[2-251]TG3DSA:3.40.605.10
SSF53720\"[2-433]TSSF53720


","BeTs to 6 clades of COG1012COG name: NAD-dependent aldehyde dehydrogenasesFunctional Class: CThe phylogenetic pattern of COG1012 is -mt-Yq-CEBR-uj-------Number of proteins in this genome belonging to this COG is 2","***** IPB002086 (Aldehyde dehydrogenase family) with a combined E-value of 1.9e-07. IPB002086A 98-111 IPB002086C 211-253 IPB002086D 307-356","Residues 376-449 are 59% similar to a (SUCCINATE-SEMIALDEHYDE DEHYDROGENASE NADP+ EC 1.2.1.16) protein domain (PD127014) which is seen in SUCD_CLOKL.Residues 1-177 are 47% similar to a (DEHYDROGENASE OXIDOREDUCTASE ALCOHOL) protein domain (PD011559) which is seen in SUCD_CLOKL.Residues 283-395 are 52% similar to a (DEHYDROGENASE OXIDOREDUCTASE ALCOHOL) protein domain (PD008645) which is seen in SUCD_CLOKL.Residues 92-263 are 24% similar to a (GAMMA-GLUTAMYL PHOSPHATE REDUCTASE GPR) protein domain (PD001968) which is seen in PROA_CORGL.Residues 181-269 are 57% similar to a (DEHYDROGENASE OXIDOREDUCTASE ALDEHYDE NAD PROTEIN ALDH) protein domain (PD000218) which is seen in SUCD_CLOKL.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Wed Mar 14 11:51:23 MST 2001","Wed Mar 14 11:51:23 MST 2001","Fri Dec 15 16:33:58 MST 2000","Fri Dec 15 16:33:58 MST 2000","Wed Mar 14 11:51:23 MST 2001","Wed Mar 14 11:51:23 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Fri Dec 15 16:33:58 MST 2000","Wed Mar 14 11:51:23 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Mar 14 11:51:23 MST 2001","34540484","","","Nair RV, Bennett GN, Papoutsakis ET, Molecular characterization of an aldehyde/alcohol dehydrogenase gene from Clostridium acetobutylicum ATCC 824, J Bacteriol 1994 Feb;176(3):871-85, PubMed: 8300540 ","","Fri Dec 15 16:33:58 MST 2000","1","","","PG0687" "PG0622","745924","744812","1113","ATGCAACTTTTCAAACTCAAGAGTGTAACACATCACTTTGACACTTTTGCAGAATTTGCCAAGGAATTCTGTCTTGGAGAACGCGACTTGGTAATTACCAACGAGTTCATCTATGAACCGTATATGAAGGCATGCCAGCTCCCCTGCCATTTTGTTATGCAGGAGAAATATGGGCAAGGCGAGCCTTCTGACGAAATGATGAATAACATCTTGGCAGACATCCGTAATATCCAGTTCGACCGCGTAATCGGTATCGGAGGAGGTACGGTTATTGACATCTCTAAACTTTTCGTTCTGAAAGGATTAAATGATGTACTCGATGCATTCGACCGCAAAATACCTCTTATCAAAGAGAAAGAACTGATCATTGTGCCCACAACATGCGGAACGGGTAGCGAGGTGACGAACATTTCTATCGCAGAAATCAAAAGCCGTCACACCAAAATGGGATTGGCTGACGATGCCATTGTTGCAGACCATGCCATCATCATACCTGAACTTCTGAAGAGCTTGCCTTTCCACTTCTACGCATGCAGTGCAATCGATGCTCTTATCCATGCCATCGAGTCATACGTATCTCCTAAAGCCAGTCCATATTCTCGTCTGTTCAGTGAGGCGGCTTGGGACATTATCCTGGAAGTATTCAAGAAAATCGCCGAACACGGCCCTGAATACCGCTTCGAAAAGCTGGGAGAAATGATCATGGCCAGCAACTATGCCGGTATAGCCTTCGGAAATGCAGGAGTAGGAGCCGTCCACGCACTATCCTACCCGTTGGGAGGCAACTATCACGTGCCGCATGGAGAAGCAAACTATCAGTTCTTCACAGAGGTATTCAAAGTATACCAAAAGAAGAATCCTTTCGGCTATATAGTCGAACTCAACTGGAAGCTCTCCAAGATACTGAACTGCCAGCCCGAATACGTATATCCGAAGCTGGATGAACTTCTCGGATGCCTTCTTACCAAGAAACCTTTGCACGAATACGGCATGAAGGACGAAGAGGTAAGAGGCTTTGCGGAATCAGTGCTTAAGACACAGCAAAGATTGCTCGCCAACAACTACGTAGAGCTTACTGTAGATGAGATCGAAGGTATCTACAGAAGACTCTAC","5.80","-8.41","42046","MQLFKLKSVTHHFDTFAEFAKEFCLGERDLVITNEFIYEPYMKACQLPCHFVMQEKYGQGEPSDEMMNNILADIRNIQFDRVIGIGGGTVIDISKLFVLKGLNDVLDAFDRKIPLIKEKELIIVPTTCGTGSEVTNISIAEIKSRHTKMGLADDAIVADHAIIIPELLKSLPFHFYACSAIDALIHAIESYVSPKASPYSRLFSEAAWDIILEVFKKIAEHGPEYRFEKLGEMIMASNYAGIAFGNAGVGAVHALSYPLGGNYHVPHGEANYQFFTEVFKVYQKKNPFGYIVELNWKLSKILNCQPEYVYPKLDELLGCLLTKKPLHEYGMKDEEVRGFAESVLKTQQRLLANNYVELTVDEIEGIYRRLY","745924 744812","MD WIT RPG00463 NAD-dependent-4-hydroxybuyrate dehydrogenase Ck. Catalytic activity: 4-hydroxybutanoate + NAD(+) = succinate semialdehyde + NADH. Cofactor: requires divalent cations for activity. Similarity: belongs to the iron-containing alcohol dehydrogenase family. Act confirmed in 33277 for glutamate catabolism to butyrate. (Takahashi et al 2000).TIGR ID: PG0689","iron-containing alcohol dehydrogenase","Cytoplasm","Using gapped BLAST PG0622 shows 49% similarity to a NAD-dependent 4-hydroxybutyrate dehydrogenase in Clostridium kluyveri (AAA92348). Residues 124-371 show a weaker similarity to an alcohol dehydrogenase homolog in Agrobacterium tumefaciens (AAD43989) and an iron containing alcohol dehydrogenase in Schizosaccharomyces pombe (CAA89956).","
InterPro
IPR001670
Domain
Iron-containing alcohol dehydrogenase
PF00465\"[10-363]TFe-ADH
PS00060\"[250-270]TADH_IRON_2
noIPR
unintegrated
unintegrated
G3DSA:1.20.1090.10\"[174-371]TG3DSA:1.20.1090.10
G3DSA:3.40.50.1970\"[1-172]TG3DSA:3.40.50.1970
PIRSF000113\"[1-371]TADH4
PTHR11496\"[135-287]TPTHR11496
SSF56796\"[3-371]TSSF56796


","BeTs to 8 clades of COG1454COG name: Alcohol dehydrogenase IVFunctional Class: CThe phylogenetic pattern of COG1454 is A-tkyqV-Eb-----------Number of proteins in this genome belonging to this COG is 1","***** IPB001670 (Iron-containing alcohol dehydrogenase) with a combined E-value of 4.9e-31. IPB001670B 82-97 IPB001670C 126-135 IPB001670D 158-191 IPB001670E 253-268","Residues 52-200 are 46% similar to a (DEHYDROGENASE OXIDOREDUCTASE NAD ALCOHOL IRON REDUCTASE) protein domain (PD001480) which is seen in 4HDB_CLOKL.Residues 202-371 are 55% similar to a (NAD-DEPENDENT 4-HYDROXYBUTYRATE) protein domain (PD212036) which is seen in 4HDB_CLOKL.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Wed Mar 14 11:58:59 MST 2001","Fri Dec 15 16:48:58 MST 2000","Fri Dec 15 16:48:58 MST 2000","Fri Dec 15 16:48:58 MST 2000","Wed Mar 14 11:58:59 MST 2001","Wed Mar 14 11:58:59 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs in P.gingivalis","Fri Dec 15 16:48:58 MST 2000","Wed Mar 14 11:58:59 MST 2001","-46% similar to PDB:1RRM Crystal Structure of Lactaldehyde reductase (E_value = 3.6E_12);-46% similar to PDB:2BI4 LACTALDEHYDE:1,2-PROPANEDIOL OXIDOREDUCTASE OF ESCHERICHIA COLI (E_value = 3.6E_12);-46% similar to PDB:2BL4 LACTALDEHYDE:1,2-PROPANEDIOL OXIDOREDUCTASE OF ESCHERICHIA COLI (E_value = 3.6E_12);-43% similar to PDB:1O2D Crystal structure of Alcohol dehydrogenase, iron-containing (TM0920) from Thermotoga maritima at 1.30 A resolution (E_value = 2.3E_11);-43% similar to PDB:1VHD Crystal structure of an iron containing alcohol dehydrogenase (E_value = 2.3E_11);","","","Residues 7 to 363 (E-value = 7.3e-72) place PG0622 in the Fe-ADH family which is described as Iron-containing alcohol dehydrogenase (PF00465)","Wed Mar 14 11:58:59 MST 2001","34540485","","","","","","1","","","PG0689" "PG0623","747270","745978","1293","ATGAAAGACGTATTAGCGGAATATGCCTCCCGAATTGTTTCGGCCGAAGAAGCCGTAAAACATATCAAAAATGGAGAACGGGTAGCTTTGTCACATGCTGCCGGAGTTCCTCAGAGTTGTGTTGATGCACTGGTACAACAGGCCGACCTTTTCCAGAATGTCGAAATTTATCACATGCTTTGTCTCGGCGAAGGAAAATATATGGCACCTGAAATGGCCCCTCACTTCCGACACATAACCAATTTTGTAGGTGGTAATTCTCGTAAAGCAGTTGAGGAAAATAGAGCCGACTTCATTCCGGTATTCTTTTATGAAGTGCCATCAATGATTCGCAAAGACATCCTTCACATAGATGTCGCCATCGTTCAGCTTTCAATGCCTGATGAGAATGGTTACTGTAGTTTTGGAGTATCTTGCGATTATAGCAAACCGGCAGCAGAAAGCGCTCATTTAGTTATAGGGGAAATCAACCGTCAAATGCCATATGTACATGGCGACAACTTGATTCACATATCGAAGTTGGATTACATCGTGATGGCAGACTACCCTATCTATTCTCTTGCAAAGCCCAAAATCGGAGAAGTAGAAGAAGCTATCGGGCGTAATTGTGCCGAGCTTATTGAAGATGGTGCCACACTCCAACTCGGTATCGGCGCGATTCCTGATGCAGCCCTGTTATTCCTCAAGGACAAAAAAGATCTGGGGATCCATACCGAGATGTTCTCCGATGGTGTTGTCGAATTAGTTCGCAGTGGAGTAATTACAGGAAAGAAAAAGACACTTCACCCCGGAAAGATGGTCGCAACCTTCTTAATGGGAAGCGAAGACGTATATCATTTCATCGACAAAAATCCCGATGTAGAACTTTATCCGGTAGATTACGTCAATGATCCGCGAGTAATCGCTCAAAATGATAATATGGTCAGCATCAATAGCTGTATCGAAATCGATCTTATGGGACAAGTCGTGTCCGAATGTATAGGAAGCAAGCAATTCAGCGGAACCGGCGGTCAAGTAGATTATGTTCGTGGAGCAGCATGGTCTAAAAACGGCAAAAGCATCATGGCAATTCCCTCAACAGCCAAAAACGGTACTGCATCTCGAATTGTACCTATAATTGCAGAGGGAGCTGCTGTAACAACCCTCCGCAACGAAGTCGATTACGTTGTAACCGAATACGGTATAGCACAACTCAAAGGAAAGAGTTTGCGCCAGCGAGCAGAAGCTCTTATTGCCATAGCCCACCCGGATTTCAGAGAGGAACTAACGAAACATCTCCGCAAACGTTTCGGA","5.90","-8.93","47345","MKDVLAEYASRIVSAEEAVKHIKNGERVALSHAAGVPQSCVDALVQQADLFQNVEIYHMLCLGEGKYMAPEMAPHFRHITNFVGGNSRKAVEENRADFIPVFFYEVPSMIRKDILHIDVAIVQLSMPDENGYCSFGVSCDYSKPAAESAHLVIGEINRQMPYVHGDNLIHISKLDYIVMADYPIYSLAKPKIGEVEEAIGRNCAELIEDGATLQLGIGAIPDAALLFLKDKKDLGIHTEMFSDGVVELVRSGVITGKKKTLHPGKMVATFLMGSEDVYHFIDKNPDVELYPVDYVNDPRVIAQNDNMVSINSCIEIDLMGQVVSECIGSKQFSGTGGQVDYVRGAAWSKNGKSIMAIPSTAKNGTASRIVPIIAEGAAVTTLRNEVDYVVTEYGIAQLKGKSLRQRAEALIAIAHPDFREELTKHLRKRFG","747270 745978","MD function 4-OH-butyrate to crotonyl. Act confirmed in 33277for glutamate catabolism to butyrate. (Takahashi et al 2000). TIGR ID: PG0690","4-hydroxybutyrate coenzyme A transferase","Cytoplasm","Using gapped BLAST PG0623 shows numerous hits to coenzyme A transferases including 59% similarity to a 4-hydroxybutyrate coenzyme A transferase in Clostridium kluyveri (AAA92344), 51% similarity to a 4-hydroxybutyrate CoA-transferase in Clostridium aminobutyricum (CAB60036) and 43% similarity to a hypothetical protein in Synechocystis sp.(BAA17706).","
InterPro
IPR003702
Family
Acetyl-CoA hydrolase/transferase
PTHR21432\"[1-431]TActCoA_hydro
PF02550\"[4-183]TAcetylCoA_hydro
noIPR
unintegrated
unintegrated
PTHR21432:SF11\"[1-431]TPTHR21432:SF11
SSF100950\"[8-183]T\"[193-430]TSSF100950


","BeTs to 4 clades of COG0427COG name: Acetyl-CoA hydrolaseFunctional Class: CThe phylogenetic pattern of COG0427 is A---y--ce------------Number of proteins in this genome belonging to this COG is 3","No significant hit to the Blocks database.","Residues 8-428 are 59% similar to a (TRANSFERASE PROTEIN A 4-HYDROXYBUTYRATE) protein domain (PD005956) which is seen in CAT2_CLOKL.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Wed Mar 14 12:50:00 MST 2001","Fri Dec 15 17:03:32 MST 2000","Fri Dec 15 17:00:29 MST 2000","Fri Dec 15 17:00:29 MST 2000","","Wed Mar 14 12:50:00 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 8-430 share 57% identity with PG1708, 4-hydroxybutyrate coenzyme A transferase and residues 161-426 show a weaker similarity (28%) to another coenzyme A transferase, PG0905.","Tue Apr 3 12:43:23 MDT 2001","Wed Mar 14 12:50:00 MST 2001","-62% similar to PDB:2OAS Crystal Structure of 4-hydroxybutyrate coenzyme A transferase (AtoA) in complex with CoA from Shewanella oneidensis, Northeast Structural Genomics Target SoR119. (E_value = 1.2E_94);-46% similar to PDB:2NVV Crystal Structure of the Putative Acetyl-CoA hydrolase/transferase PG1013 from Porphyromonas gingivalis, Northeast Structural Genomics Target PgR16. (E_value = 9.8E_17);-40% similar to PDB:2G39 Crystal structure of coenzyme A transferase from Pseudomonas aeruginosa (E_value = 2.9E_16);","","","Residues 4 to 431 (E-value = 7.4e-121) place PG0623 in the AcetylCoA_hydro family which is described as Acetyl-CoA hydrolase/transferase (PF02550)","Wed Mar 14 12:50:00 MST 2001","34540486","","","Gerhardt A, Cinkaya I, Linder D, Huisman G, Buckel W, Fermentation of 4-aminobutyrate by Clostridium aminobutyricum: cloning of two genes involved in the formation and dehydration of 4-hydroxybutyryl-CoA, Arch Microbiol 2000 Sep;174(3):189-99, PubMed: 11041350.","","Fri Dec 15 17:00:29 MST 2000","1","","","PG0690" "PG0624","747560","747279","282","ATGACAGAAGAAATAGTCGAACTCGTACTGCGCGAGCGGATCAGTCCGCTACTGCGCAGTCACGGGGGCGACTTATCTTTATCTCAAATCAAGGATAAGACCGTTTTTGTGCGGTTTTCCGGAGCATGCCGATTCTGTCCGGCAGCACATGAGACAGTAGAAAAAATCGTTCAAGCCATGATACGCGAATACTTCAAAGATGACAACATCGATGTCATTCTTGAAAATAGTGTTAGCGATGATCTGTTAGAACAAGCCAAGAATATTTTGAGAAAACCCAAA","5.80","-1.62","10741","MTEEIVELVLRERISPLLRSHGGDLSLSQIKDKTVFVRFSGACRFCPAAHETVEKIVQAMIREYFKDDNIDVILENSVSDDLLEQAKNILRKPK","747575 747279","TIGR ID: PG0691","possible NifU-like protein","Cytoplasm","Using gapped BLAST PG024 shows numerous hits to NifU-like domains including 29% similarity to a hypothetical protein in C.elegans (CAA94609), 33% similarity a hypothetical protein in Arabidopsis thaliana (BAA97015) and 31% similarity to a putative NifU-like metallocluster assembly factor in Arabidopsis thaliana (AAD22656).","
InterPro
IPR001075
Domain
Nitrogen-fixing NifU, C-terminal
PD002830\"[12-73]TNifU_C
PF01106\"[6-75]TNifU
noIPR
unintegrated
unintegrated
PTHR11178\"[1-47]TPTHR11178


","BeTs to 8 clades of COG0694COG name: Thioredoxin-like proteins and domains - NifU familyFunctional Class: OThe phylogenetic pattern of COG0694 is a---y--ceb-hUJ----inxNumber of proteins in this genome belonging to this COG is 1","***** PF01592 (NifU-like N terminal domain) with a combined E-value of 2.5e-08. PF01592D 14-53","No significant hit to the ProDom database.","","Thu Jun 14 13:11:25 MDT 2001","","Thu Jun 14 13:11:25 MDT 2001","Thu Jun 14 13:11:25 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:11:25 MDT 2001","Thu Jun 14 13:11:25 MDT 2001","","","Fri Dec 15 17:23:42 MST 2000","Tue Jun 19 15:05:15 MDT 2001","Fri Dec 15 17:19:20 MST 2000","Tue Jun 19 15:00:27 MDT 2001","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Fri Dec 15 17:19:20 MST 2000","Mon Apr 30 18:21:14 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 6 to 75 (E-value = 1.2e-07) place PG0624 in the NifU family which is described as NifU-like domain (PF01106)","Tue Jun 19 15:00:27 MDT 2001","34540487","","","","","","1","","","PG0691" "PG0625","749093","747636","1458","ATGATGACTAGCGAACAGTACGTAGAAAGTCTTCGGAAACTTAATCTGAAGGTTTACTTCATGGGTGAAAGGATCGAAAACCCTGTAGATCATCCCATGATTCGTCCCTCAATGAATTCAGTAGCTATGACTTATAAGCTTGCAGAGATGGACGAATACAAGCATTTAATGACAGCAACTTCAAACTTGACTGGTAAGCAAGTGAATCGTTTCTGCCATCTACATCAGAGCACAGAGGATCTGAAAGACAAAGTGAAGATGCAGCGTCTCATGGGACAAAAAACAGCTTCATGCTTCCAGCGTTGTGTGGGAATGGATGCATTCAATGCCATCTATTCTACTACTTACGAAATGGATCAAGCTCTGGGTACCACTTATCACAAGCGTTTCATCGAGTACATGAAATATGTACAAGACAACGACTTGGTCGTAGATGGAGCCATGACAGACCCCAAAGGGGATCGCGGTTTATCTCCCTCAGAACAAGCCGATCCGGATCTTTATCTGCACATTGTTGAAGTTCGTGAAGATGGGATCGTCGTTTCCGGTGCAAAGGCACACCAAACCGGAGCAGTCAATTCGCACGAGCATCTGATCATGCCTACGATCGCTATGCGCGAAGCTGATGCTGATTATGCCGTTTCTTTTGCTGTTCCCAGTGATGCAGAAGGCGTTATTATGATCTATGGTCGCCAGTCATGCGACACTCGCAAAATGGAAGAAGGGGCAGACATTGACCTCGGCAACTCTGAATTCGGCGGACATGAAGCTCTTGTTGTATTCGACCGCGTATTCGTGCCCAATGAACGCGTGTTCATGTGCAAAGAATACCAGTTTGCAGGTATGATGGTAGAACGTTTCGCCGGATACCACCGTCAGTCTTATGGAGGATGTAAAGTAGGTGTTGGTGATGTACTTATCGGTGCAGCTGCTCTTGCAGCAGACTACAATGGAGTTCCTAAGGCATCTCACATTAAGGATAAACTCATTGAGATGATCCACCTGAATGAAACCCTTTATGCTTGCGGTATTGCATGCTCTTCAGAGGGAACTCAGATGAAAGCCGGCAACTATATGATCGATTTGTTGTTAGCTAATGTTTGTAAGCAAAATATCACCCGCCTTCCTTATGAAATAGCTCGTTTGGCAGAAGATATTGCAGGAGGTTTGATGGTAACCATGCCTTCTCAACAAGACTTCCGCCATCCGGAAATAGGCCCGATCGTAAAGAAATATCTTGCAGGTGCAACAGGCAAATCGACAGAAAACCGTATGCGTGTTCTGCGTTTGATAGAGAATATCACGCTGGGAACAGCTGCCGTCGGTTATCGAACCGAGTCTATGCACGGAGCCGGATCTCCTCAAGCTCAGAGAATCATGATCGCTCGTCAGGGAGATCTTGAGGGCAAGAAAAAGCTTGCACGGGCGATTGCTCATATCGACGAATCACTCGATAAG","6.40","-5.54","54026","MMTSEQYVESLRKLNLKVYFMGERIENPVDHPMIRPSMNSVAMTYKLAEMDEYKHLMTATSNLTGKQVNRFCHLHQSTEDLKDKVKMQRLMGQKTASCFQRCVGMDAFNAIYSTTYEMDQALGTTYHKRFIEYMKYVQDNDLVVDGAMTDPKGDRGLSPSEQADPDLYLHIVEVREDGIVVSGAKAHQTGAVNSHEHLIMPTIAMREADADYAVSFAVPSDAEGVIMIYGRQSCDTRKMEEGADIDLGNSEFGGHEALVVFDRVFVPNERVFMCKEYQFAGMMVERFAGYHRQSYGGCKVGVGDVLIGAAALAADYNGVPKASHIKDKLIEMIHLNETLYACGIACSSEGTQMKAGNYMIDLLLANVCKQNITRLPYEIARLAEDIAGGLMVTMPSQQDFRHPEIGPIVKKYLAGATGKSTENRMRVLRLIENITLGTAAVGYRTESMHGAGSPQAQRIMIARQGDLEGKKKLARAIAHIDESLDK","749093 747636","TIGR ID: PG0692","4-hydroxyphenylacetate-3-hydroxylase","Cytoplasm","Using gapped BLAST PG0625 shows numerous strong hits to hydroxylases including 75% similarity to a 4-hydroxybutyryl-CoA dehydratase in Clostridium aminobutyricum (CAB60035) and three 4-hydroxyphenylacetate-3-hydroxylase proteins in Archaeoglobus fulgidus, 58% similarity to NP_069169.1, 38% similarity to NP_069860 and 34% similarity to ref|NP_069718.","
InterPro
IPR004925
Family
4-hydroxyphenylacetate 3-hydroxylase
PF03241\"[108-480]THpaB
InterPro
IPR006091
Domain
Acyl-CoA dehydrogenase/oxidase, central region
G3DSA:2.40.110.10\"[143-275]TAcyl_CoA_DH/ox_M
InterPro
IPR009100
Domain
Acyl-CoA dehydrogenase/oxidase, middle and N-terminal
SSF56645\"[159-272]TAcylCoA_dehyd_NM
InterPro
IPR013764
Domain
Acyl-CoA dehydrogenase, type1/2, C-terminal
G3DSA:1.20.140.10\"[276-481]TAcylCoA_DH_1/2_C
noIPR
unintegrated
unintegrated
G3DSA:1.10.3140.10\"[1-142]TG3DSA:1.10.3140.10
PIRSF000331\"[1-486]THpaA_HpaB


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 173-276 are 43% similar to a (DEHYDROGENASE PROTEIN ACYL-COA OXIDOREDUCTASE) protein domain (PD000396) which is seen in O29235_ARCFU.Residues 1-172 are 58% similar to a (4-HYDROXYPHENYLACETATE-3-HYDROXYLASE PROTEIN HPAA-3) protein domain (PD022367) which is seen in O29914_ARCFU.Residues 279-480 are 56% similar to a (HYDROXYLASE) protein domain (PD007593) which is seen in O29914_ARCFU.Residues 173-273 are 64% similar to a (HYDROXYLASE AROMATIC HYDROCARBONS) protein domain (PD007594) which is seen in O29914_ARCFU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Dec 15 17:40:30 MST 2000","Fri Dec 15 17:40:30 MST 2000","Fri Dec 15 17:40:30 MST 2000","","Mon Apr 30 18:25:46 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Fri Dec 15 17:40:30 MST 2000","Mon Apr 30 18:25:46 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 108 to 480 (E-value = 5.8e-191) place PG0625 in the HpaB family which is described as 4-hydroxyphenylacetate 3-hydroxylase family (PF03241)","Mon Apr 30 18:25:46 MDT 2001","34540488","","","Gerhardt A, Cinkaya I, Linder D, Huisman G, Buckel W, Fermentation of 4-aminobutyrate by Clostridium aminobutyricum: cloning of two genes involved in the formation and dehydration of 4-hydroxybutyryl-CoA, Arch Microbiol 2000 Sep;174(3):189-99, PubMed: 11041350.","","Fri Dec 15 17:40:30 MST 2000","1","","","PG0692" "PG0626","750936","749797","1140","ATGAAAGCTAAATCTTTATTATTAGCACTTGCGGGTCTCGCATGCACATTCAGTGCAACAGCCCAAGAAGCTACTACACAGAACAAAGCAGGGATGCACACCGCATTCCAACGTGATAAGGCCTCCGATCATTGGTTCATTGACATTGCAGGTGGAGCAGGTATGGCTCTCTCGGGATGGAATAATGATGTAGACTTTGTAGATCGTCTAAGTATCGTTCCTACTTTCGGTATCGGTAAATGGCATGAGCCTTATTTCGGTACTCGTCTCCAATTCACAGGATTCGACATCTATGGATTCCCGCAAGGGAGCAAGGAGCGTAACCACAATTACTTTGGAAACGCCCACCTTGACTTCATGTTCGATCTGACGAACTATTTCGGTGTATACCGTCCCAATCGTGTCTTCCATATCATCCCATGGGCAGGTATAGGATTTGGTTATAAATTCCATAGCGAAAACGCCAATGGTGAAAAAGTAGGAAGTAAAGATGATATGACCGGAACAGTTAATGTCGGTTTGATGCTGAAATTCCGCCTATCAAGAGTCGTAGACTTCAATATTGAAGGACAAGCTTTTGCCGGAAAGATGAACTTTATCGGGACAAAGAGAGGAAAAGCAGACTTCCCTGTAATGGCTACAGCAGGTCTAACGTTCAACCTTGGCAAGACAGAGTGGACAGAAATTGTTCCTATGGACTATGCTTTGGTCAATGACCTGAACAACCAAATCAACTCACTTCGCGGTCAAGTGGAAGAGTTGAGCCGTCGTCCTGTTTCATGCCCTGAATGCCCTGAGCCTACACAGCCTACAGTTACTCGTGTAGTCGTTGACAATGTGGTTTACTTCCGTATCAATAGTGCAAAGATTGATCGTAATCAAGAAATCAATGTTTACAATACAGCTGAATATGCGAAGACCAACAACGCACCGATCAAGGTAGTAGGTTACGCTGACGAAAAAACCGGTACTGCGGCCTATAACATGAAGCTTTCAGAGCGTCGTGCAAAAGCGGTAGCCAAGATGCTTGAAAAGTATGGTGTTTCTGCGGATCGCATTACAATTGAATGGAAGGGCTCATCAGAGCAAATCTATGAAGAGAACGCTTGGAATCGTATTGTAGTAATGACTGCAGCGGAA","8.00","2.56","42440","MKAKSLLLALAGLACTFSATAQEATTQNKAGMHTAFQRDKASDHWFIDIAGGAGMALSGWNNDVDFVDRLSIVPTFGIGKWHEPYFGTRLQFTGFDIYGFPQGSKERNHNYFGNAHLDFMFDLTNYFGVYRPNRVFHIIPWAGIGFGYKFHSENANGEKVGSKDDMTGTVNVGLMLKFRLSRVVDFNIEGQAFAGKMNFIGTKRGKADFPVMATAGLTFNLGKTEWTEIVPMDYALVNDLNNQINSLRGQVEELSRRPVSCPECPEPTQPTVTRVVVDNVVYFRINSAKIDRNQEINVYNTAEYAKTNNAPIKVVGYADEKTGTAAYNMKLSERRAKAVAKMLEKYGVSADRITIEWKGSSEQIYEENAWNRIVVMTAAE","750951 749797","Veith, et al.(2001) have shown that in strain W50 omp40 (PG0626) and omp41 (PG0627) are co-transcribed, and they form heterodimers through disulfide bonds to each other. They find that with the possible exception of the proteinases, Omp40/41 are the most abundant proteins associated with the outer membrane of W50. Like OmpA, they are heat-modifiable and can be proteolytically cleaved to yield two domains, shown below. The N-terminus of each mature protein is pyroGlu. These authors suspect that omp40/41 are porins.Veith et al. divide the chain thus:Signal peptide: residues 1-21,N-terminal domain: residues 22-257,C-terminal domain: residues 258-380.Ross, et al.(2001) select PG0626 as one of fifteen vaccine candidate antigens, based on in vitro and in vivo laboratory studies of 120 candidates screened by bioinformatics techniques from the whole W50 genome. TIGR ID: PG0694.","outer membrane protein","Outer membrane, Cytoplasm","Previously sequenced from strain W50 and located in GenBank as AAD51068. Using gapped BLAST PG0626 is 29% similar to outer membrane protein OmpA in Vibrio cholerae (AAF95357,AAB86826).","
InterPro
IPR006664
Domain
Bacterial outer membrane protein
PR01021\"[313-328]T\"[328-344]TOMPADOMAIN
InterPro
IPR006665
Domain
OmpA/MotB
PD000930\"[282-339]TOmpA/MotB
PF00691\"[282-369]TOmpA
PS51123\"[270-380]TOMPA_2
InterPro
IPR006690
Domain
OmpA-like
PS01068\"[314-359]TOMPA_1
noIPR
unintegrated
unintegrated
G3DSA:3.30.1330.60\"[265-378]TG3DSA:3.30.1330.60
PS51257\"[1-15]FPROKAR_LIPOPROTEIN
SSF103088\"[267-378]TSSF103088


","BeTs to 6 clades of COG1360COG name: Flagellar motor protein MotBFunctional Class: NThe phylogenetic pattern of COG1360 is -----Qv-EBrHUJ--OLinxNumber of proteins in this genome belonging to this COG is 5","***** IPB001145 (Bacterial outer membrane protein) with a combined E-value of 1.5e-09. IPB001145B 280-306 IPB001145C 313-348","Residues 310-364 are 54% similar to a (PROTEIN MEMBRANE OUTER PRECURSOR SIGNAL TRANSMEMBRANE) protein domain (PD000930) which is seen in O31154_VIBCH.","","Thu Jun 14 13:12:11 MDT 2001","","Thu Jun 14 13:12:11 MDT 2001","Thu Jun 14 13:12:11 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:12:11 MDT 2001","Thu Jun 14 13:12:11 MDT 2001","","Wed Nov 7 13:45:17 2001","Fri Aug 24 10:34:38 2001","Fri Dec 15 18:00:04 MST 2000","Fri Aug 24 10:34:38 2001","Tue Jun 19 14:55:42 MDT 2001","Tue Jun 19 14:55:42 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1-376 share 46% identity with PG0627, an outer membrane protein, immediately upstream of PG0626.","Fri Aug 24 10:34:38 2001","Mon Apr 2 13:34:58 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 282 to 369 (E-value = 1.6e-14) place PG0626 in the OmpA family which is described as OmpA family (PF00691)","Fri Aug 24 10:34:38 2001","34540489","Fri Dec 15 17:58:55 MST 2000","Veith,P.D.,Talbo,G.H.,Slakeski,N.,Reynolds,E.C., Identification of a novel heterodimeric outer membrane protein of Porphyromonas gingivalis by two-dimensional gel electrophoresis and peptide mass fingerprinting, Eur. J. Biochem. (2001) 268, 4748-4757, PMID: 11532011.Ross BC, Czajkowski L, Hocking D, Margetts M, Webb E, Rothel L, Patterson M, Agius C, Camuglia S, Reynolds E, Littlejohn T, Gaeta B, Ng A, Kuczek ES, Mattick JS, Gearing D, Barr IG, Identification of vaccine candidate antigens from a genomic analysis of Porphyromonas gingivalis, Vaccine 2001 Jul 20;19(30): 4135-42, PMID: 11457538.Ross,B.C., Barr,I., Patterson,M., Agius,C., Rothel,L., Margetts,M., Hocking,D. and Webb,E., Porphyromonas gingivalis polypeptides and nucleic acids, Patent: Australia (AU 98/01023)-PCT 10-DEC-1998; CSL Ltd; 45 Poplar Road; R&D; Parkville, Victoria; Australia.","","Wed Nov 7 13:45:17 2001","","1","","","PG0694" "PG0627","752158","750986","1173","ATGAAGGTAAAGTACTTAATGCTCACATTGGTTGGAGCAATTGCACTGAACGCAAGTGCACAGGAGAATACTGTACCGGCAACGGGTCAGTTACCCGCTAAGAATGTTGCTTTTGCTCGCAATAAAGCAGGCAGCAATTGGTTTGTAACACTGCAAGGCGGTGTTGCAGCGCAGTTCCTCAATGACAACAACAACAAAGACCTCATGGACCGCTTAGGAGCCATAGGTTCTCTTTCTGTCGGAAAGTATCACAGCCCTTTCTTTGCAACTCGTTTGCAAATTAACGGAGGTCAAGCCCACACTTTCCTCGGAAAAAATGGCGAACAAGAAATCAACACCAATTTTGGTGCAGCTCACTTCGACTTTATGTTTGATGTGGTTAACTACTTTGCACCATATCGCGAAAATCGTTTCTTCCATTTAATTCCATGGGTAGGTGTTGGCTACCAACACAAATTCATCGGTAGCGAATGGAGCAAAGACAATGTGGAATCACTGACGGCGAATGTAGGAGTTATGATGGCTTTCAGATTAGGAAAGCGAGTAGACTTTGTGATCGAAGCACAAGCAGCTCACTCCAATCTCAATCTAAGTCGCGCATACAATGCCAAGAAAACTCCCGTATTCGAAGATCCCGCAGGACGTTATTACAATGGATTCCAGGGGATGGCTACAGCAGGTCTTAATTTCCGCCTGGGAGCCGTAGGCTTCAATGCCATTGAACCAATGGACTACGCACTTATCAATGATCTGAATGGTCAGATTAACCGTTTGCGCAGCGAGGTCGAAGAACTCTCAAAACGTCCTGTATCATGCCCCGAATGTCCTGAAGTAACTCCTGTTACTAAGACAGAAAATATACTGACGGAAAAAGCTGTACTGTTCCGTTTCGACAGCCACGTTGTGGACAAAGATCAATTGATCAACCTGTATGACGTAGCTCAGTTTGTAAAAGAAACTAACGAGCCGATTACCGTTGTTGGTTATGCTGATCCTACGGGTAATACTCAATACAACGAGAAATTGTCTGAGCGTCGGGCTAAAGCCGTTGTTGATGTTCTGACAGGTAAATATGGTGTGCCTTCCGAATTAATCTCTGTAGAATGGAAGGGCGACTCTACGCAACCGTTCAGCAAGAAAGCTTGGAATCGTGTTGTAATCGTTCGCTCCAAG","9.00","4.61","43412","MKVKYLMLTLVGAIALNASAQENTVPATGQLPAKNVAFARNKAGSNWFVTLQGGVAAQFLNDNNNKDLMDRLGAIGSLSVGKYHSPFFATRLQINGGQAHTFLGKNGEQEINTNFGAAHFDFMFDVVNYFAPYRENRFFHLIPWVGVGYQHKFIGSEWSKDNVESLTANVGVMMAFRLGKRVDFVIEAQAAHSNLNLSRAYNAKKTPVFEDPAGRYYNGFQGMATAGLNFRLGAVGFNAIEPMDYALINDLNGQINRLRSEVEELSKRPVSCPECPEVTPVTKTENILTEKAVLFRFDSHVVDKDQLINLYDVAQFVKETNEPITVVGYADPTGNTQYNEKLSERRAKAVVDVLTGKYGVPSELISVEWKGDSTQPFSKKAWNRVVIVRSK","752158 750986","Veith, et al.(2001) have shown that in strain W50 omp40 (PG0626) and omp41 (PG0627) are co-transcribed, and they form heterodimers through disulfide bonds to each other. They find that with the possible exception of the proteinases, Omp40/41 are the most abundant proteins associated with the outer membrane of W50. Like OmpA, they are heat-modifiable and can be proteolytically cleaved to yield two domains, shown below. The N-terminus of each mature protein is pyroGlu. These authors suspect that omp40/41 are porins. Veith et al. divide the chain thus:Signal peptide: residues 1-20,N-terminal domain: residues 21-268,C-terminal domain: residues 269-391.Ross, et al.(2001) select PG0627 as one of fifteen vaccine candidate antigens, based on in vitro and in vivo laboratory studies of 120 candidates screened by bioinformatics techniques from the whole W50 genome.TIGR ID: PG0695","outer membrane protein","Outer membrane, Periplasm, Extracellular","PG0627 is essentially identical to strain W50 previously sequenced in GenBank as AAD51067. Using gapped BLAST residues 264-366 are 37% similar to outer membrane protein in Pseudomonas agarici (AAD24552) and residues 9-373 are 25% similar to an outer membrane protein in Pseudomonas aeruginosa (AAG05166).","
InterPro
IPR006664
Domain
Bacterial outer membrane protein
PR01021\"[295-317]T\"[324-339]T\"[339-355]TOMPADOMAIN
InterPro
IPR006665
Domain
OmpA/MotB
PD000930\"[293-350]TOmpA/MotB
PF00691\"[294-384]TOmpA
PS51123\"[282-391]TOMPA_2
InterPro
IPR006690
Domain
OmpA-like
PS01068\"[326-371]TOMPA_1
noIPR
unintegrated
unintegrated
G3DSA:3.30.1330.60\"[277-389]TG3DSA:3.30.1330.60
SSF103088\"[280-389]TSSF103088


","BeTs to 5 clades of COG1360COG name: Flagellar motor protein MotBFunctional Class: NThe phylogenetic pattern of COG1360 is -----Qv-EBrHUJ--OLinxNumber of proteins in this genome belonging to this COG is 5","***** IPB001145 (Bacterial outer membrane protein) with a combined E-value of 4.3e-13. IPB001145B 292-318 IPB001145C 324-359","Residues 285-373 are 36% similar to a (PROTEIN MEMBRANE OUTER PRECURSOR) protein domain (PD000930) which is seen in PORF_PSEAE.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Wed Nov 7 12:04:11 2001","Fri Aug 24 12:07:51 2001","Fri Dec 15 18:16:54 MST 2000","Fri Aug 24 11:57:01 2001","Wed Mar 14 12:54:11 MST 2001","Wed Mar 14 12:54:11 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1-388 share 46% identity with PG0626, an outer membrane protein, immediately downstream of PG0627. ","Fri Aug 24 12:07:51 2001","Wed Mar 14 12:54:11 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 294 to 384 (E-value = 2.7e-12) place PG0627 in the OmpA family which is described as OmpA family (PF00691)","Wed Mar 14 12:54:11 MST 2001","34540490","","Veith,P.D.,Talbo,G.H.,Slakeski,N.,Reynolds,E.C., Identification of a novel heterodimeric outer membrane protein of Porphyromonas gingivalis by two-dimensional gel electrophoresis and peptide mass fingerprinting, Eur. J. Biochem. (2001) 268, 4748-4757, PMID: 11532011.Ross BC, Czajkowski L, Hocking D, Margetts M, Webb E, Rothel L, Patterson M, Agius C, Camuglia S, Reynolds E, Littlejohn T, Gaeta B, Ng A, Kuczek ES, Mattick JS, Gearing D, Barr IG, Identification of vaccine candidate antigens from a genomic analysis of Porphyromonas gingivalis, Vaccine 2001 Jul 20;19(30):4135-42, PMID: 11457538. Ross,B.C., Barr,I., Patterson,M., Agius,C., Rothel,L., Margetts,M., Hocking,D. and Webb,E, Porphyromonas gingivalis polypeptides and nucleic acids, Patent: Australia (AU 98/01023)-PCT 10-DEC-1998; CSL Ltd; 45 Poplar Road; R&D Parkville, Victoria; Australia.","","Wed Nov 7 11:55:38 2001","","1","","","PG0695" "PG0628","753447","752467","981","ATGTATCCAGTTATGTATCGTAGATTTTGTATGACAATAGGTATGGTAGCATTATTCGGCTCCATTACTTCATTTGCAGCGTCATGCAGCCAGCAGCCTAACAAAATAGAGCAACCCACGGATAGCATTACTTCAAATGTTTCAGTTCAAGAACCGGAACTTGCTTTCCCTTTGCCGGAGATACCACTTTCTATAACAAGTCCTCGGGAACGAGCCTTATATTTCGTAAAACATTATTGGGATGAATTCAACTTCATGGATTCTGCCTACTTGGAGAAACCTCAAAATATGGAAGTTAGCATCGCCAACTTTCTCGGAGTAGCCATAGCACTTCCTGTAGATGAAGTCAAATCCTCGATTATCTATCCACTGGAAAAATCTTCCGGAGCACTGCTGGAGTTATTCATAAAATTCTACAAGAAGTATCTCTACGAGCCTAATTCTCCCATGCTCAACGAGGAATATTATATTCCGGCTGTGGCTTTCTTGATGAAGTCGCCAAAGGTGTCCTTTGCAGAACGAATACGACTGAAAGAGCGATACGAGCTGATGCTGCGCAATCGAATCGGCACAAAGGCCGAGGACTTTATCTACGAACAGACCAATGGCAGTTTACATCGCCTCAGCAGCAGATTTACGCTCAACACCATACTCGTCTTTTATGAGCCGGGATGCCATACATGTTCCGAGCTGATTCGCCAACTGCATCAGGATGATTGGCTGCGTAATTTGGTAGAATCCAAACAACTAAGTATTTTATTCATATATCCGGATAATGATAAAAATGCATGGGTGGCCGGTTTGTCCGATTTTCCCGATTTCGTGGAAGTAGGAATCAATAGCGATAGCAGTATCACAGATCGACAACTGTATGATATCAAAGCCTCACCAACGATCTATCTGCTTGATAATCACGGATATGTAATTCTAAAAGATGTACAAATAGGAGTTATAAAAGAGTATCTGAAAGAGAAAAAAGAA","5.20","-6.96","37754","MYPVMYRRFCMTIGMVALFGSITSFAASCSQQPNKIEQPTDSITSNVSVQEPELAFPLPEIPLSITSPRERALYFVKHYWDEFNFMDSAYLEKPQNMEVSIANFLGVAIALPVDEVKSSIIYPLEKSSGALLELFIKFYKKYLYEPNSPMLNEEYYIPAVAFLMKSPKVSFAERIRLKERYELMLRNRIGTKAEDFIYEQTNGSLHRLSSRFTLNTILVFYEPGCHTCSELIRQLHQDDWLRNLVESKQLSILFIYPDNDKNAWVAGLSDFPDFVEVGINSDSSITDRQLYDIKASPTIYLLDNHGYVILKDVQIGVIKEYLKEKKE","753447 752467","TIGR ID: PG0698","possible lipoprotein","Cytoplasm","This sequence corresponds to gi:34396804 in Genbank.Its nearest neighbor in the NR database is gi:53712865 from Bacteroides fragilis YCH46.","
InterPro
IPR012335
Domain
Thioredoxin fold
G3DSA:3.40.30.10\"[188-311]TThioredoxin_fold
InterPro
IPR012336
Domain
Thioredoxin-like fold
SSF52833\"[189-323]TIPR012336
noIPR
unintegrated
unintegrated
PS51257\"[1-29]TPROKAR_LIPOPROTEIN


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Mar 3 13:46:53 2005","Thu Mar 3 13:46:53 2005","Fri Dec 15 18:20:17 MST 2000","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Fri Dec 15 18:20:17 MST 2000","Mon Apr 30 18:31:05 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Apr 30 18:31:05 MDT 2001","34540491","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Thu Mar 3 13:50:07 2005","","1","","","PG0698" "PG0629","756049","753482","2568","ATGATAGTTCAGAAAAAAAATAATGCCCCCGTTTGGAAAGAAGTATTCACATGTGTAGAACTTCCCGAAAAACTCAAGAAGGCGGAGGAGTTGGCCTATAATCTTTGGTGGTCGTGGAATCCGCAGGCTACAAACCTTTTCGAGCGCATGGATCCGGATCTCTGGTTCGAAACGGACGGCAATCCGATCAAAATGCTCCGCTCCCTCTCGCTCAATCGTATTGATACCCTCCTCAACGATACAGAATGGATGCAAGAGCTGGACAATGTTCACAGTACATGGCAAAAATATATGTCGTCCCCGGGACAAACCGATCGACCGAGTATAGCCTATTTCAGCATGGAATACGGCCTTACTCATGTATTGAAGATATATTCCGGTGGATTGGGTGTATTGGCGGGAGACTACCTGAAAGAAGCGAGTGACAGCAATGTACCCCTTACGGCAGTCGGCTTTCTCTATCGATACGGCTATTTCGACCAACGGATCAGTGCAGACGGTCAGCAGCTGGCCACTTACGATGCTCAAGACTTTCATCTTCTTCCTATACGGCCCGTGAAGGATGAGAGTGGATACCAGATCGTATTGGAAGTACCTTTCTCCGATCACACGGTGTACTGCCATGTATGGCAGGTCAAGGTGGGACGGATAGATCTTTTTCTGATGGATACCGATCTCGACAAAAACAGTGAGGCCGACCGTCAGATCACTCACAATCTATACGGAGGAGATTGGGAGAATCGAATGAAGCAGGAATACCTGCTCGGCATCGGTGGCATCCTCCTGCTGCAGCGTTTGGGCATCAAGAAAGAAATCTACCACATGAATGAAGGTCATGCAGCACTGATCAATGCTCAACGTCTGGCCGACTATGTGGAACAAAGGGGATTGAGTTTCGATATTGCCCTTGAAGCTGTTCGTTCCTCCTCGCTCTACACGGTTCACACCCCTGTACCGGCAGGGCATGACTACTTCGATGAAGAGCTTTTGGGGCGTTACATGGGACATTTTCCTCGCAGACTTGGCATCAGCTGGCAGGAGTTCATCGACATGGGACGAACGACACCGGGCTCGAACGAAAAGTTCTCCATGAGTGTCTTTGCACTCAACACCTGTCAGGAGGCCAATGGAGTCAGCTATCTGCATGGAGTAGTCTCGCGAAGGATGTTCGCTCCCGTATGGCCCGGCTTCTTTGCCGAAGAGCTGCATGTAGGACATGTCACCAATGGCGTACACCTTCCGACCTGGGCTTCTCCGGAGAGTCAGAGGTTCTATGAACGGCATCTTGGCACGGATTTTCTCAGCCGTCAGGCTGAAGAATCCGCTTGGGAAATAATAGAGCAAATCCCGTCCGAAGAAATATGGGAACTGCGCTCACAACTCAAAGAGAATCTGCTCCATTACATAGCGCATGACTATCGCAAACGATGGCTTCGACACAATGAGGATCCGATCTGTTTCCCCGATGGCCTGGACGGTATCGAACCCAATACACTCCTAATCGGTTTCGCTCGCAGATTTGCTACCTATAAAAGGGCGCATCTGCTCTTTACGGATTTAGAAAGGCTATCACGTCTGGTCAATAATCCCGAACGCCCCGTACGATTCCTTTACGCAGGCAAAGCACATCCGGCCGACGGAGGAGGACAAGGGCTTATCAAACACATTACGGAAATCAGCCGCCGTCCCGAATTCCGAGGCAAAATCATTTTCTTGGAAAACTACGACATGCATCTGGCTTCCAAACTGATTGCCGGCGTCGATGTGTGGCTCAACACCCCTACCCGACCGCTCGAAGCATCGGGGACATCCGGACAAAAGGCTGAAATGAACGGTGTACTGAACTTCTCCGTACAAGATGGATGGTGGTACGAAGGTTATCGACCAAATGCCGGCTGGGCACTGACCGACAAACCGACTTATCGCGATCAACAAATGCAGGACAAACTCGATGCTCTTTCCTTATATGACATTCTTGAGAGAGAGATCATTCCTCTCTATTATGACAAAGAGGACAAAAGTTACTCCGAAGGTTGGATACGATATATACGTCGATCGATGATGTACATAGCTCCACACTTCACAATGAAGAGAATGCTGGACGACTATTATGATAAGTTCTACGGACCTCTTGCTCAACGCCACCGTTCGATCAGTGCCTCTTCCTTCGCTTTGGCTTCGGAAATTGCAGACTGGAAGCAACAAACTGCGACACATTGGGATGAGATGCGAGTCGTACGAGTTGCTGCCACCGGATTCGGTCTTTGCCTCCAAGACAATCATACCATGCAAACCCTTGAGATAGAGATAGAAAAAGGCAATTTATCAGCCGAGTTAAATGTCGAGTTGGTTGTAATTTCCGACGACAATCAAGGGGGAGTTTCTTTAGTCCAAACGATTCCTCTCAATCTGTCCGAACAATCGGCAGACAACAGATGGCAGAAGTATAACGTGAATTGCAGCCTGAAGAATCCGGGTTTACATCGTGTGGCGATACGCATTACTCCCCATTCGGATCTTCTACCCCATAAAATGGATTTTGCCTATGTTCGATGGGCTGCCATTTCA","6.00","-16.97","98722","MIVQKKNNAPVWKEVFTCVELPEKLKKAEELAYNLWWSWNPQATNLFERMDPDLWFETDGNPIKMLRSLSLNRIDTLLNDTEWMQELDNVHSTWQKYMSSPGQTDRPSIAYFSMEYGLTHVLKIYSGGLGVLAGDYLKEASDSNVPLTAVGFLYRYGYFDQRISADGQQLATYDAQDFHLLPIRPVKDESGYQIVLEVPFSDHTVYCHVWQVKVGRIDLFLMDTDLDKNSEADRQITHNLYGGDWENRMKQEYLLGIGGILLLQRLGIKKEIYHMNEGHAALINAQRLADYVEQRGLSFDIALEAVRSSSLYTVHTPVPAGHDYFDEELLGRYMGHFPRRLGISWQEFIDMGRTTPGSNEKFSMSVFALNTCQEANGVSYLHGVVSRRMFAPVWPGFFAEELHVGHVTNGVHLPTWASPESQRFYERHLGTDFLSRQAEESAWEIIEQIPSEEIWELRSQLKENLLHYIAHDYRKRWLRHNEDPICFPDGLDGIEPNTLLIGFARRFATYKRAHLLFTDLERLSRLVNNPERPVRFLYAGKAHPADGGGQGLIKHITEISRRPEFRGKIIFLENYDMHLASKLIAGVDVWLNTPTRPLEASGTSGQKAEMNGVLNFSVQDGWWYEGYRPNAGWALTDKPTYRDQQMQDKLDALSLYDILEREIIPLYYDKEDKSYSEGWIRYIRRSMMYIAPHFTMKRMLDDYYDKFYGPLAQRHRSISASSFALASEIADWKQQTATHWDEMRVVRVAATGFGLCLQDNHTMQTLEIEIEKGNLSAELNVELVVISDDNQGGVSLVQTIPLNLSEQSADNRWQKYNVNCSLKNPGLHRVAIRITPHSDLLPHKMDFAYVRWAAIS","756049 753482","TIGR ID: PG0699","alpha glycan phosphorylase","Cytoplasm","Using gapped BLAST PG0629 shows strong similarity to glycogen phosphorylases in numerous prokaryotes. This sequence is orthologous to CT248 and to BT1293.","
InterPro
IPR000811
Family
Glycosyl transferase, family 35
PIRSF000460\"[26-737]TPprylas_GlgP
PTHR11468\"[42-708]TGlyco_trans_35
PF00343\"[110-692]TPhosphorylase
InterPro
IPR011834
Family
Alpha-glucan phosphorylase
TIGR02094\"[109-710]Tmore_P_ylases
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.2000\"[32-440]TG3DSA:3.40.50.2000
SSF53756\"[15-714]TSSF53756


","BeTs to 9 clades of COG0058COG name: Glucan phosphorylaseFunctional Class: GThe phylogenetic pattern of COG0058 is -m-kyq-CEbrh------in-Number of proteins in this genome belonging to this COG is 1","***** IPB000811 (Carbohydrate phosphorylase) with a combined E-value of 3.5e-09. IPB000811B 119-158 IPB000811F 267-306 IPB000811I 494-528 IPB000811J 533-576 IPB000811K 584-638","Residues 109-161 are 60% similar to a (PHOSPHORYLASE GLYCOGEN PROTEIN) protein domain (PD012910) which is seen in PHSG_AQUAE.Residues 33-99 are 43% similar to a (PHOSPHORYLASE GLYCOGEN TRANSFERASE GLYCOSYLTRANSFERASE) protein domain (PD016015) which is seen in PHSG_AQUAE.Residues 354-430 are 53% similar to a (PHOSPHORYLASE GLYCOGEN TRANSFERASE) protein domain (PD010784) which is seen in O70011_STRCO.Residues 607-687 are 46% similar to a (PHOSPHORYLASE GLYCOGEN TRANSFERASE) protein domain (PD012567) which is seen in O59181_PYRHO.Residues 443-605 are 52% similar to a (PHOSPHORYLASE TRANSFERASE GLYCOSYLTRANSFERASE) protein domain (PD001956) which is seen in O33831_THEMA.Residues 209-330 are 45% similar to a (PHOSPHORYLASE TRANSFERASE GLYCOSYLTRANSFERASE) protein domain (PD001939) which is seen in O59181_PYRHO.Residues 145-205 are 45% similar to a (PHOSPHORYLASE GLYCOGEN ALPHA-GLUCAN 837AA) protein domain (PD015808) which is seen in O33831_THEMA.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Mar 22 11:31:05 MST 2000","Thu Dec 4 13:11:04 2003","Fri Dec 15 18:27:43 MST 2000","Tue May 22 17:20:33 MDT 2001","Tue May 22 17:20:33 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Fri Dec 15 18:29:38 MST 2000","Tue May 22 17:20:33 MDT 2001","-37% similar to PDB:1A8I SPIROHYDANTOIN INHIBITOR OF GLYCOGEN PHOSPHORYLASE (E_value = 2.8E_16);-37% similar to PDB:1ABB CONTROL OF PHOSPHORYLASE B CONFORMATION BY A MODIFIED COFACTOR: CRYSTALLOGRAPHIC STUDIES ON R-STATE GLYCOGEN PHOSPHORYLASE RECONSTITUTED WITH PYRIDOXAL 5'-DIPHOSPHATE (E_value = 2.8E_16);-37% similar to PDB:1B4D AMIDOCARBAMATE INHIBITOR OF GLYCOGEN PHOSPHORYLASE (E_value = 2.8E_16);-37% similar to PDB:1BX3 EFFECTS OF COMMONLY USED CRYOPROTECTANTS ON GLYCOGEN PHOSPHORYLASE ACTIVITY AND STRUCTURE (E_value = 2.8E_16);-37% similar to PDB:1C50 IDENTIFICATION AND STRUCTURAL CHARACTERIZATION OF A NOVEL ALLOSTERIC BINDING SITE OF GLYCOGEN PHOSPHORYLASE B (E_value = 2.8E_16);","","","Residues 110 to 692 (E-value = 7e-07) place PG0629 in the Phosphorylase family which is described as Carbohydrate phosphorylase (PF00343)","Tue May 22 17:20:33 MDT 2001","34540492","","","","","","1","","","PG0699" "PG0630","756686","756177","510","ATGATTTTCCGATCGTTTGTAGGCTTTTGGCTCATATCGCTGTCCGAAAATAGTTTCGTAATGAGAACAAAAATAAAGTATCCGGTTCAAACTTGCAGACCCTGCGAATTGCTTCCATCGGTATTGATGGAAGAGGCCGACAGGAAAACCGGTGTAAAACTCCATGCCGACACGGATTTCCACAACAAGAAAGATGATGAGGCTTACCTTGTTTTTTCCGAAAGATTTTGGCCAAAAAGATTTTACGAACCCAAAGTGTCGAGATTATGGTTCGTATTTTTGAAAATTTACGCGCGAGTTTTTTTTCGTTTTGGTTCGAGAAATTATTTTTTCCCGAACCAAAAGCAAAAAATTGCCGCGCCACGTTTTTTGGTCCCACAAATGATAATTTTCTTGTACGTTCAGGCTTACCCCAACTATCCGCCTGACAAGAAGTTTCTACCACCAGAATACCGTCGGGAACTTCTAACCGAATTGCTGGCGGATGATACGATACTCAATGATAGAGGT","10.30","8.38","20471","MIFRSFVGFWLISLSENSFVMRTKIKYPVQTCRPCELLPSVLMEEADRKTGVKLHADTDFHNKKDDEAYLVFSERFWPKRFYEPKVSRLWFVFLKIYARVFFRFGSRNYFFPNQKQKIAAPRFLVPQMIIFLYVQAYPNYPPDKKFLPPEYRRELLTELLADDTILNDRG","756716 756177 [Bad Olap 828 65 0]","TIGR ID: PG0700","hypothetical protein","Inner membrane, Cytoplasm","No significant hits.","
noIPR
unintegrated
unintegrated
signalp\"[1-17]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 13:12:52 MDT 2001","","Thu Jun 14 13:12:52 MDT 2001","Thu Jun 14 13:12:52 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:12:52 MDT 2001","Thu Jun 14 13:12:52 MDT 2001","","","Fri Dec 15 18:32:23 MST 2000","Fri Dec 15 18:32:23 MST 2000","Fri Dec 15 18:32:23 MST 2000","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs in P.gingivalis.","Fri Dec 15 18:32:23 MST 2000","Thu Jun 14 13:12:52 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Jun 19 14:50:10 MDT 2001","34540493","","","","","","1","","","PG0700" "PG0631","756652","757185","534","ATGAGCCAAAAGCCTACAAACGATCGGAAAATCATCCTCATTACCGGCGGACAACGTTCGGGCAAAAGTCTCTATGCTGAGCAGATGGCACTAGCGCTGTCCGCTCATCCTATCTACCTGGCTACGGCGAGGATTTGGGATGATGAGTTCGCTCAGCGAGTGGCCGTACACCGTGAGAGACGAGGTTCTGAGTGGACCAATATAGAGGAAGAGAAGGTGCTGAGTCGCCACAATCCGCTCGGCGAAGTGATTTTGATCGATTGTCTGACGCTTTGGGCTACTAATTATTTCTTTGACAACGACTCCGATGTGGAGCTTGCATATGCGGCTCTCTGTGCAGAGTTCGATTCCTTCACATCGCATTCGGGTACGTTCATCTTCGTTACCAATGAGATCGGATTGGGAGGAGTGGCAGAGAATGCTGTCCAGAGGCATTTTGCCGATCTGCTGGGCAGGCTCAATCAGTACGTAGCTGCACGGGCCGATCGTGTCGTCTTGATGATCAGCGGCATTCCCATGGTCATTAAAGGGGAC","5.30","-4.89","19859","MSQKPTNDRKIILITGGQRSGKSLYAEQMALALSAHPIYLATARIWDDEFAQRVAVHRERRGSEWTNIEEEKVLSRHNPLGEVILIDCLTLWATNYFFDNDSDVELAYAALCAEFDSFTSHSGTFIFVTNEIGLGGVAENAVQRHFADLLGRLNQYVAARADRVVLMISGIPMVIKGD","756652 757185 [Shorter 827 65 95]","MD function: ATP-dependent phosphorylation of adenosylcobinamide and adds GMP to adenosylcobinamide phosphate.Roper et al. (2000) assign a role in cobalamin biosynthesis to this protein, hence the gene is denoted cobU. See in this regard PG193 (cbiC), PG0192 (cbiET), PG0191 (cbiGF), PG0190 (cbiJD), PG1040 (cbiA), PG1038 (cbiP), PG1037 (cobD), PG1036 (cobD/cbiB), PG0602 (cbiK), PG0632 (cobT), PG0633 (cobS), PG0434 (hemN/F), PG0438 (cbiL), PG0112 (hemH), PG0193 (cbiH).TIGR ID: PG0701","cobinamide kinase/cobinamide phosphate guanylyltransferases","Cytoplasm","Using gapped BLAST PG0631 is similar to cobinamide kinases/cobinamide phosphate guanylyltransferases found in several prokaryotes including 47% similar to Rhodobacter capsulatus (AAC16174), 41% similar to Pseudomonas denitrificans (AAA25778), 39% similar in Deinococcus radiodurans (AAF12282) and 38% similar to E.coli (AAC75054).","
InterPro
IPR001005
Domain
SANT, DNA-binding
PS00037\"[65-73]?MYB_1
InterPro
IPR003203
Family
Cobinamide kinase/cobinamide phosphate guanyltransferase
PD011091\"[12-176]TCobU
PIRSF006135\"[10-178]TCobU
PF02283\"[12-175]TCobU
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[11-176]TG3DSA:3.40.50.300
SSF52540\"[11-176]TSSF52540


","BeTs to 3 clades of COG2087COG name: Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase CobU/CobPFunctional Class: HThe phylogenetic pattern of COG2087 is -------ce-r----------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 12-176 are 47% similar to a (COBINAMIDE KINASE COBP TRANSFERASE) protein domain (PD011091) which is seen in Q52680_RHOCA.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Mon Jun 4 13:58:45 MDT 2001","Mon Dec 18 16:16:41 MST 2000","Mon Dec 18 16:15:39 MST 2000","Mon Dec 18 16:15:39 MST 2000","","Wed Mar 14 13:01:12 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Mon Dec 18 16:15:39 MST 2000","Wed Mar 14 13:01:12 MST 2001","-57% similar to PDB:1C9K THE THREE DIMENSIONAL STRUCTURE OF ADENOSYLCOBINAMIDE KINASE/ ADENOSYLCOBINAMIDE PHOSPHATE GUALYLYLTRANSFERASE (COBU) COMPLEXED WITH GMP: EVIDENCE FOR A SUBSTRATE INDUCED TRANSFERASE ACTIVE SITE (E_value = 2.0E_23);-57% similar to PDB:1CBU ADENOSYLCOBINAMIDE KINASE/ADENOSYLCOBINAMIDE PHOSPHATE GUANYLYLTRANSFERASE (COBU) FROM SALMONELLA TYPHIMURIUM (E_value = 2.0E_23);-52% similar to PDB:1LTQ CRYSTAL STRUCTURE OF T4 POLYNUCLEOTIDE KINASE (E_value = 2.0E_23);-52% similar to PDB:1LY1 Structure and Mechanism of T4 Polynucleotide Kinase (E_value = 2.0E_23);-52% similar to PDB:1RC8 T4 Polynucleotide Kinase bound to 5'-GTCAC-3' ssDNA (E_value = 2.0E_23);","","","Residues 12 to 175 (E-value = 6.4e-53) place PG0631 in the CobU family which is described as Cobinamide kinase / cobinamide phosphate guanyltransferase (PF02283)","Wed Mar 14 13:01:12 MST 2001","34540494","","Roper JM, Raux E, Brindley AA, Schubert HL, Gharbia SE, Shah HN, Warren MJ. The enigma of cobalamin (Vitamin B12) biosynthesis in Porphyromonas gingivalis. Identification and characterization of a functional corrin pathway. J Biol Chem. 2000 Dec 22;275(51):40316-23. PMID: 11007789","","Mon Jun 4 13:57:54 MDT 2001","","1","","","PG0701" "PG0632","757241","758275","1035","ATGAAAACATTCAATATCAAAAGCCCCGATCAAGCTATCCATCAAGCCCTGATCGATCGGATCAACAACCTGGCAAAGCCTGAGGGTTCGTTGGGAATGCTCGAGGAACTTGCCCTGCAAATCGGGCTTATACAGCAGACCCTATCTCCTCGACTCCGTAATCCTCACAACATAATCTTTGCCGCGGATCATGGTATTGCCGACGAAGGAGTCAGCTTTTCGCCCAAGGAGGTCACCTGGCAGGTAATCAATAATTTTCTCGGTGGCGGTGCCGGTATCAATTTCCTCTGCCGTCAGCATGGATTCGAACTCGTGCTGGTGGATGGAGGTATCGACTTCGATTTTCCCGAAGGATTGGACATTATCGACCGTAAGGTGCGGAAAGGTACGCGAAACTATTTGTACGAAGCGGCACTGACCGGAGAAGAGATGGAGCAAGCTGTGACAGCCGGAGCGGAAGTCGTTAGCGACTGTCATCACCGAGGCTGCAATGTGGTGAGCTTCGGTGAGATGGGGGTGGCCAATACTTCTACCTCTTCCATGTGGATGAGCTTCCTCACCGGAATCGACCTGAAAGATTGTGTGGGTGCCGGTAGCGGGTTGGATTCGGAGGGAGTCAGACATAAGTATAACATTCTCAAACAGGCCAAAGAAAACTATAAAGGCAACGGATCGACCGAGGACGTCATCACTTATTTTGGAGGATTGGAGATGCTAATGGCCGTTGGGGGAATGCTTCAGGCGGCAGAGTTGGGGATGCTGATCATCGTGGATGGATTCATCATGACCAATTGCCTCCTTGCTGCATCGCAGTTCTATCCCGAAGTCTGCGACTATGCCGTATTCGGTCACTGCGGCGACGAATCGGGGCATGCACGCCTGCTGGAGTATATGAAGGCCAAACCTCTTCTGAATCTGGGGCTTCGCTTGGGAGAAGGTTCCGGAGCGGTGTGCTCATACCCCATCATAGTATCGGCCGTCAGCATGATCAACGAAATGCATACTTTTGCTCAAGCGGCTGTGACTAAGTATTTC","5.00","-12.95","37362","MKTFNIKSPDQAIHQALIDRINNLAKPEGSLGMLEELALQIGLIQQTLSPRLRNPHNIIFAADHGIADEGVSFSPKEVTWQVINNFLGGGAGINFLCRQHGFELVLVDGGIDFDFPEGLDIIDRKVRKGTRNYLYEAALTGEEMEQAVTAGAEVVSDCHHRGCNVVSFGEMGVANTSTSSMWMSFLTGIDLKDCVGAGSGLDSEGVRHKYNILKQAKENYKGNGSTEDVITYFGGLEMLMAVGGMLQAAELGMLIIVDGFIMTNCLLAASQFYPEVCDYAVFGHCGDESGHARLLEYMKAKPLLNLGLRLGEGSGAVCSYPIIVSAVSMINEMHTFAQAAVTKYF","757241 758275","MD cobalamin biosynthesis; porphyrin biosynthesis; transferase.Roper et al. (2000) assign a role in cobalamin biosynthesis to this protein, hence the gene is denoted cobT. See in this regard PG193 (cbiC), PG0192 (cbiET), PG0191 (cbiGF), PG0190 (cbiJD), PG1040 (cbiA), PG1038 (cbiP), PG1037 (cobD), PG1036 (cobD/cbiB), PG0631 (cobU), PG0602 (cbiK), PG0633 (cobS), PG0434 (hemN/F), PG0438 (cbiL), PG0112 (hemH), PG0193 (cbiHTIGR ID: PG0702","probable nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase","Cytoplasm","Using gapped BLAST PG0632 is similar to many nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase proteins including 37% similar in Vibrio cholerae (AAF94396), 36% similar in Bacillus halodurans (BAB04003) and 35% similar in Pseudomonas aeruginosa (AAG04668).","
InterPro
IPR003200
Domain
Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase
PF02277\"[2-341]TDBI_PRT
SSF52733\"[11-344]TNN:DBI_PRT
InterPro
IPR008281
Domain
Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase subtype
PD009438\"[19-341]TNN:DBI_PRT_sub
InterPro
IPR012064
Family
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
PIRSF015623\"[1-344]TNN-DBI_PRT
noIPR
unintegrated
unintegrated
G3DSA:1.10.1610.10\"[1-45]TG3DSA:1.10.1610.10
G3DSA:3.40.50.10210\"[52-324]TG3DSA:3.40.50.10210
PTHR21712\"[104-334]TPTHR21712
PTHR21712:SF8\"[104-334]TPTHR21712:SF8


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 250-363 are 35% similar to a (PHOSPHORIBOSYLTRANSFERASE TRANSFERASE) protein domain (PD009438) which is seen in COBT_SALTY.Residues 44-227 are 36% similar to a (PHOSPHORIBOSYLTRANSFERASE TRANSFERASE) protein domain (PD011100) which is seen in COBT_MYCTU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Mon Jun 4 14:00:35 MDT 2001","Mon Dec 18 16:29:30 MST 2000","Mon Dec 18 16:29:30 MST 2000","Mon Dec 18 16:29:30 MST 2000","","Fri Mar 9 16:05:30 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Mon Dec 18 16:29:30 MST 2000","Fri Mar 9 16:05:30 MST 2001","-56% similar to PDB:1WX1 Crystal structure of nictinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase from Thermus thermophilus HB8 (E_value = 1.6E_51);-56% similar to PDB:1J33 Crystal structure of CobT from Thermus thermophilus HB8 (E_value = 2.7E_51);-53% similar to PDB:1D0S CRYSTAL STRUCTURE OF NICOTINATE MONONUCLEOTIDE : 5,6-DIMETHYLBENZIMIDAZOLE PHOSPHORIBOSYLTRANSFERASE (COBT) FROM SALMONELLA TYPHIMURIUM COMPLEXED WITH 5, 6-DIMETHYLBENZIMIDAZOLE (E_value = 9.3E_44);-53% similar to PDB:1D0V CRYSTAL STRUCTURE OF NICOTINATE MONONUCLEOTIDE:5,6-DIMETHYLBENZIMIDAZOLE PHOSPHORIBOSYLTRANSFERASE (COBT) FROM SALMONELLA TYPHIMURIUM COMPLEXED WITH ITS REACTION PRODUCTS DETERMINED TO 1.9 A RESOLUTION (E_value = 9.3E_44);-53% similar to PDB:1JH8 Structural Investigation of the Biosynthesis of Alternative Lower Ligands for Cobamides by Nicotinate Mononucleotide:5,6-Dimethylbenzimidazole Phosphoribosyltransferase (CobT) from Salmonella enterica (E_value = 9.3E_44);","","","Residues 2 to 341 (E-value = 1.3e-106) place PG0632 in the DBI_PRT family which is described as Phosphoribosyltransferase (PF02277)","Fri Mar 9 16:05:30 MST 2001","34540495","","Roper JM, Raux E, Brindley AA, Schubert HL, Gharbia SE, Shah HN, Warren MJ. The enigma of cobalamin (Vitamin B12) biosynthesis in Porphyromonas gingivalis. Identification and characterization of a functional corrin pathway. J Biol Chem. 2000 Dec 22;275(51):40316-23. PMID: 11007789","","Mon Jun 4 14:00:35 MDT 2001","","1","","","PG0702" "PG0633","758285","759064","780","ATGAAGGAAAAGCAGGCAAAACCATATCAGCGAATATTGGCAGCATTTATGCTGCTCACACGCTTACCGCTGTGGCGTTTGGTGAGTGTCCCTGATGCTGCTTTCAAGCGCGCCACCGATTATTGGAGTCTGGTGGGTTGGCTTACGGGAGGACTGATGGTTCTAATCTGCCACTTGGGACTACTGATCGACCTTCCTGTCACTATGGTCGTTTCCCTTGCACTCCTCTCTCGCGTTCTCTTTACAGGGGCTTTCCATGAGGATGGATTGGGTGATTTCTTCGATGGATTCGGTGCAGGGCGAACCAAGGAGCGCATCTTGGCTATCATGAAAGATTCGCATACGGGTACTTATGGTATTCTGTCCTTCATCTTTTACTTCATGATAGGGATCTATTCTCTGTCTTCTCTCCCTCCGATCCTGACGCTTGTCGCATTAGGTGTGGGCGATCCTCTGTGCAAATTGGTGGCCTCCCAGCTCATCAATACGCTTCCCTACGCCCGTTCCGAGGATGAGAGTAAGGTGCAAGCCATATACAGTCCGATGGGTGTCTTGACTTTTTGGGTCTCATTCTCTGCCGGAGCTTTACCCTTGGCCCTCTTCCTTCCACTCCCTTATTGGCCGGCAGTCTTGATCCCCATTTTGGCTTTCCTCTTGCTGCGCGGTCTTATGAAGCGGAAGATAGGCGGTTATACAGGCGATTGCTGCGGAGCTACTTTTCTTCTCTGTGAGCTGTCTTTTTGGGTAGGAATGCTTATTATGAATAGGATCATAGAATTG","8.60","4.47","28722","MKEKQAKPYQRILAAFMLLTRLPLWRLVSVPDAAFKRATDYWSLVGWLTGGLMVLICHLGLLIDLPVTMVVSLALLSRVLFTGAFHEDGLGDFFDGFGAGRTKERILAIMKDSHTGTYGILSFIFYFMIGIYSLSSLPPILTLVALGVGDPLCKLVASQLINTLPYARSEDESKVQAIYSPMGVLTFWVSFSAGALPLALFLPLPYWPAVLIPILAFLLLRGLMKRKIGGYTGDCCGATFLLCELSFWVGMLIMNRIIEL","758285 759064","Roper et al. (2000) assign a role in cobalamin biosynthesis to this protein, hence the gene is denoted cbiK. See in this regard PG193 (cbiC), PG0192 (cbiET), PG0191 (cbiGF), PG0190 (cbiJD), PG1040 (cbiA), PG1038 (cbiP), PG1037 (cobD), PG1036 (cobD/cbiB), PG0631 (cobU), PG0632 (cobT), PG0602 (cbiK), PG0434 (hemN/F), PG0438 (cbiL), PG0112 (hemH), PG0193 (cbiHTIGR ID: PG0703","cobalamin (5`-phosphate) synthase","Inner membrane, Cytoplasm","Using gapped BLAST PG0633 is similar to several cobalamin (5`-phosphate) synthase proteins in prokaryoteincluding those seen in Vibrio cholerae (AAF94397),Rhodobacter capsulatus (gbAAC16172), E.coli (gbAAC75053.1) and Salmonella typhimurium (gbAAA27270.1).","
InterPro
IPR003805
Family
Cobalamin (vitamin B12) biosynthesis CobS, cobalamin-5-phosphate synthase
PF02654\"[12-251]TCobS


","BeTs to 6 clades of COG0368COG name: Cobalamin-5-phosphate synthaseFunctional Class: HThe phylogenetic pattern of COG0368 is Amtk---ce-r----------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 19-249 are 25% similar to a (COBALAMIN 5'-PHOSPHATE SYNTHASE PROTEIN) protein domain (PD005827) which is seen in O68086_RHOCA.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Thu Jul 24 17:27:59 2008","Mon Dec 18 16:57:09 MST 2000","Thu Jul 24 17:27:59 2008","Mon Dec 18 16:57:09 MST 2000","","Thu Jul 24 17:27:59 2008","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Mon Dec 18 16:57:09 MST 2000","Thu Jul 24 17:27:59 2008","-56% similar to PDB:2CN5 CRYSTAL STRUCTURE OF HUMAN CHK2 IN COMPLEX WITH ADP (E_value = );-56% similar to PDB:2CN8 CRYSTAL STRUCTURE OF HUMAN CHK2 IN COMPLEX WITH DEBROMOHYMENIALDISINE (E_value = );","","","Residues 12 to 251 (E-value = 7.1e-13) place PG0633 in the CobS family which is described as Cobalamin-5-phosphate synthase (PF02654)","Wed Mar 14 13:13:44 MST 2001","34540496","","Roper JM, Raux E, Brindley AA, Schubert HL, Gharbia SE, Shah HN, Warren MJ. The enigma of cobalamin (Vitamin B12) biosynthesis in Porphyromonas gingivalis. Identification and characterization of a functional corrin pathway. J Biol Chem. 2000 Dec 22;275(51):40316-23. PMID: 11007789 ","","Mon Jun 4 14:02:12 MDT 2001","","1","","","PG0703" "PG0634","759069","759605","537","ATGCAGATTACTCTCATCCGCCACACGACTCCGGATGTCCCTGCCGGAATATGCTACGGGCAATCCGATGTACCCCTACGGGCTTCCTTTGAAGAAGAGGCCGAGGTCGTACGCCGCCGGCTATCGGGGATGGACTTCGATGCTGTCTATACGAGTCCGCTCAGCCGTTGTGCCCGTTTGGCTCATTTTTGCGGTTATCCTGATGCCATACAAGACGGACGACTGATGGAGATTAATTTCGGTTTGTGGGAGATGCAGCGATATGACCATATAGACGATCCTCGCTTGCAAGATTATTACGCGGATTATCTACGAACACCTGCAACGGGGGGCGAGAGTTTCGTCATGCAGCTGGAACGCGTAAGCAATTTTCTGGAAGAGGTGACTGCGATGCCGTTCGGGCATATAGCTATCTTCACGCATGGGGGAACTATTCTTTGTGCTCAGGTTTATGCGGGCTTATATGAGCTTGAGACTTGCTTCGAGCACCAAACACCCTATGGGGGCATCGTTATGCTGGTCGTTTCTGATAAAAAA","4.70","-9.79","20270","MQITLIRHTTPDVPAGICYGQSDVPLRASFEEEAEVVRRRLSGMDFDAVYTSPLSRCARLAHFCGYPDAIQDGRLMEINFGLWEMQRYDHIDDPRLQDYYADYLRTPATGGESFVMQLERVSNFLEEVTAMPFGHIAIFTHGGTILCAQVYAGLYELETCFEHQTPYGGIVMLVVSDKK","759069 759605 [Shorter 833 116 97]","TIGR ID: PG0704","probable phosphoglycerate mutase","Cytoplasm","Using gapped BLAST PG0634 displays significant similarity to a phosphoglycerate mutase protein in Deinococcus radiodurans (AAF10964), alpha-ribazole-5`-phosphate phosphatase in Vibrio cholerae (gb|AAF94399.1) and phpB in E.coli (gb|AAC73739.1).","
InterPro
IPR013078
Domain
Phosphoglycerate mutase
PF00300\"[2-148]TPGAM
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.1240\"[2-179]TG3DSA:3.40.50.1240
PIRSF001490\"[1-179]TDPGAM
PTHR23029\"[1-177]TPTHR23029
SSF53254\"[2-179]TSSF53254


","BeTs to 5 clades of COG0406COG name: Phosphoglycerate mutase/fructose-2,6-bisphosphataseFunctional Class: GThe phylogenetic pattern of COG0406 is ----YQvCEbR----------Number of proteins in this genome belonging to this COG is 3","***** IPB001345 (Phosphoglycerate mutase family) with a combined E-value of 4.1e-07. IPB001345B 49-61 IPB001345C 66-98 IPB001345D 114-159","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Mon Apr 30 18:47:27 MDT 2001","Mon Dec 18 17:08:02 MST 2000","Mon Dec 18 17:08:02 MST 2000","Tue Apr 3 12:58:31 MDT 2001","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1-175 share 44% identity with PG1769, phosphoglycerate mutase and residues 47-153 show weaker similarity with another phosphoglycerate mutase, PG1324.","Tue Apr 3 12:58:31 MDT 2001","Tue Apr 3 12:58:31 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 1 to 167 (E-value = 3.6e-07) place PG0634 in the PGAM family which is described as Phosphoglycerate mutase family (PF00300)","Tue Apr 3 12:58:31 MDT 2001","34540497","","","","","","1","","","PG0704" "PG0635","759670","760491","822","ATGAACCCATCCATCGGCATATTCGACTCCGGTTATGGAGGACTTACCATCTTGAGTGAGATCCGCAAACTCATGCCGGAGTACAACTTTGTTTACTTGGGCGATAATGCCCGCTCTCCCTATGGCAACCGCTCTTATGAAGTAGTTTACAAATTCACGCTACAGGCTGTGAGAAAGCTCTTTGAACTCGGTTGTCCGCTAGTCATTCTCGCTTGTAATACGGCATCGGCAAAAGCCTTGCGAACCATTCAGCAACGCGATCTGCCCAATATGGAGGATCCCACCCGTCGTGTCCTCGGTATCATCCGCCCTACGGTTGAAGCCGTAGATGAGATCACAAGGACTAAGCACGTAGGTGTTTTGGCCACACAAGGTACAGTTAGTTCGCATAGCTACCAGCTCGAAATCGCAAAATTGTTCCCCGAAATATCAGTCACCGAAGAGGCGTGTCCGATGTGGGTACCACTCGTGGAAACGGGCGAAAGTGACAGCCCGGGGGCTGACTATTTCATTCGCAAGCATCTGGACAGTATCATTGCCAAGGATGATACCATCGATACGATTATATTGGCGTGCACACATTATCCTCTATTGCGTCCTAAGATGAAGCGTTTGCTTACGCCTACTATCAAGCTCATAGCACAGGGTGAACTTGTGGCGCATTCTTTGAAAGACTATCTCAGTCGCCACCCCGAAATGGACAGACGCATTGAGAAGGGTGGCAAAACATCCTACTACACCACGGAGAGTCCGGACAAATTTGGAGAATTGGCATCCCTTTTCCTTAAGGAGGAAGTGGAGGCTGAGCATGTAACCATTGAT","6.20","-3.49","30764","MNPSIGIFDSGYGGLTILSEIRKLMPEYNFVYLGDNARSPYGNRSYEVVYKFTLQAVRKLFELGCPLVILACNTASAKALRTIQQRDLPNMEDPTRRVLGIIRPTVEAVDEITRTKHVGVLATQGTVSSHSYQLEIAKLFPEISVTEEACPMWVPLVETGESDSPGADYFIRKHLDSIIAKDDTIDTIILACTHYPLLRPKMKRLLTPTIKLIAQGELVAHSLKDYLSRHPEMDRRIEKGGKTSYYTTESPDKFGELASLFLKEEVEAEHVTID","759490 760491 [Bad Olap 832 116 2]","TIGR ID: PG0705","glutamate racemase","Cytoplasm","Gapped BLAST shows numerous hits to glutamate racemase proteins including 36% similarity to glr in Bacillus cereus (CAA71858) , Carnobacterium sp. (AAF72713) and 37% Aquifex aeolicus (AAC06621).This sequence is similar to BT3722.","
InterPro
IPR001920
Family
Asp/Glu racemase
PF01177\"[4-228]TAsp_Glu_race
PS00923\"[69-77]TASP_GLU_RACEMASE_1
PS00924\"[188-198]TASP_GLU_RACEMASE_2
SSF53681\"[3-114]T\"[115-272]TAsp/Glu_race
InterPro
IPR004391
Family
Glutamate racemase
TIGR00067\"[3-264]Tglut_race
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.1860\"[3-155]TG3DSA:3.40.50.1860
PTHR21198\"[1-273]TPTHR21198


","BeTs to 8 clades of COG0796COG name: Glutamate racemaseFunctional Class: MThe phylogenetic pattern of COG0796 is -----q-ceBrhuj--ol---Number of proteins in this genome belonging to this COG is 1","***** IPB001920 (Aspartate and glutamate racemases) with a combined E-value of 2.3e-46. IPB001920A 5-42 IPB001920B 65-80 IPB001920C 118-132 IPB001920D 149-158 IPB001920E 186-203","Residues 149-267 are 30% similar to a (GLUTAMATE RACEMASE PEPTIDOGLYCAN) protein domain (PD004566) which is seen in O31332_BACCE.Residues 7-223 are 27% similar to a (GLUTAMATE RACEMASE MURI) protein domain (PD111847) which is seen in O51127_BORBU.Residues 42-133 are 36% similar to a (RACEMASE GLUTAMATE ISOMERASE) protein domain (PD002869) which is seen in MURI_BACSH.Residues 2-41 are 57% similar to a (GLUTAMATE RACEMASE PEPTIDOGLYCAN) protein domain (PD004303) which is seen in MURI_LACBR.","","Thu Jun 14 13:13:32 MDT 2001","","Thu Jun 14 13:13:32 MDT 2001","Thu Jun 14 13:13:32 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:13:32 MDT 2001","Thu Jun 14 13:13:32 MDT 2001","","","Mon Dec 18 17:21:19 MST 2000","Fri Dec 26 13:35:24 2003","Mon Dec 18 17:21:19 MST 2000","Tue Jun 19 14:42:34 MDT 2001","Tue Jun 19 14:42:34 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Mon Dec 18 17:21:19 MST 2000","Mon Apr 30 18:57:40 MDT 2001","-53% similar to PDB:1ZUW Crystal structure of B.subtilis glutamate racemase (RacE) with D-Glu (E_value = 2.9E_34);-55% similar to PDB:1B73 GLUTAMATE RACEMASE FROM AQUIFEX PYROPHILUS (E_value = 4.8E_29);-55% similar to PDB:1B74 GLUTAMATE RACEMASE FROM AQUIFEX PYROPHILUS (E_value = 4.8E_29);","","","Residues 4 to 228 (E-value = 8.6e-60) place PG0635 in the Asp_Glu_race family which is described as Asp/Glu/Hydantoin racemase (PF01177)","Tue Jun 19 14:42:34 MDT 2001","34540498","","","Ashiuchi,M., Tani,K., Soda,K. and Misono,H., Properties of glutamate racemase from Bacillus subtilis IFO 3336 producing poly-gamma-glutamate, J Biochem (Tokyo) 1998 Jun;123(6):1156-63, PubMed: 9604005.","","Mon Dec 18 17:21:19 MST 2000","1","","","PG0705" "PG0636","760491","760940","450","TTGAATCATATCAGCAACATTATGAATAGAAGACAGTATCTTATAGCATTGGTCATAGCCGCCATCTTTTCGGCTTGTGGCACCAAAGCCAATACCCAAGGACGTCAGGAGAGTCTTGACGGCAAATGGGAGGTGAAGCTTTCAGAAACAGAAGACAATTCTTCGACTGAGAATGTGAAAATGACATTGGAGTTTAACCTCGCTGAAAAGCGATTCGGGGGCGAAGGCATCTGTAATACGTATGGAGGAGATATTGAAACTCTCAATTCGTCCAAGGGGACGATACGTTTGGGTGATGTTATCTCCACCCTTGTCGCCTGTGACCATATGGCTTATGAGAACGCTCTGTTCGATCGTTTGCCGGAGGTTAGGCGTTTCCAAATGAAAGAAGGCAAGTGCTATCTCTATGGAGAGGACGCAGAGACACCTCTTCTCATCCTCATCCGTCAA","5.10","-3.71","16812","LNHISNIMNRRQYLIALVIAAIFSACGTKANTQGRQESLDGKWEVKLSETEDNSSTENVKMTLEFNLAEKRFGGEGICNTYGGDIETLNSSKGTIRLGDVISTLVACDHMAYENALFDRLPEVRRFQMKEGKCYLYGEDAETPLLILIRQ","760491 760940","TIGR ID: PG0706","hypothetical protein","Cytoplasm, Outer membrane","No significant hits.","
InterPro
IPR005184
Domain
Protein of unknown function DUF306, Meta and HslJ
PF03724\"[37-137]TMETA
noIPR
unintegrated
unintegrated
signalp\"[1-28]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Mon Dec 18 17:24:20 MST 2000","Mon Dec 18 17:24:20 MST 2000","Mon Dec 18 17:24:20 MST 2000","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Mon Dec 18 17:24:20 MST 2000","","No significant hits to the PDB database (E-value < E-10).","","","Residues 37 to 137 (E-value = 1.5e-05) place PG0636 in the META family which is described as Domain of unknown function (306) (PF03724)","","34540499","","","","","","1","","","PG0706" "PG0637","763723","761180","2544","ATGATCGGAAAAAAAATCTTTTTTATCCTGCTGGCGCTCATTGCGTTCAGTGGGCTGAACGCAGCGACAGACACTGAGTTCAAGTACCCGACCGATGCCAATATCATCGGTCACGTCAAAGACAGCAAGACGGGTGAACACCTTGTCGGTATCACTATTGCTATCAAAGGCACTACCTTTGGTACATCTACAGATGCAACCGGGCACTACTATCTTCGTAACTTGCGTCCGGGTGAGATCACTTTGATTATGCGTGGCATGGGCTATAAGAGCCAGGAGCGCGTAGTCCGCGTAGAAAAGGACAAGACTATCGAGGTGAATTTCGAAGCAGAAGAGGATGCCATCAATCTGGACGAAGTCGTGATTTCGGCCAACCGCGAACTGACGCTTCGCCGTCTTGCTCCTACTCTGGTAAATGTATTGAACGAAAAAGTCTTCTCGCAAGTCAATGCTTCTAACCTGGCTCAAGGCTTGTCATTCCAGCCGGGAGTTCGTGTAGAGAACAACTGTCAGAACTGTGGTTTCAATCAAGTTCGTATCAATGGACTGGATGGTCGTTATGCACAGATCCTCATCGACAGCCGTCCCATCATGAGTGCCCTTGCCGGTGTTTACGGTCTGGAGCAGATCCCTGCCAATATGATCGAACGTGTGGAGGTAGTACGTGGTGGAGGATCGGCCTTGTACGGTTCTTCTGCTATTGCCGGAGTGGTGAATATCATCACCAAGGAACCTTCTCACAATTCTTTCACATTCAATGAATCTCTGAGCTTTACCGGTTTCAGCAAGCTGGATAACAACACGAACTTCAATGCCTCCATCGTCAGCGATGACAACCGTGCCGGTGCCATGGTATTCGGGCAGGCTCGTTACCGCAACCATTGGGATGCTAACAATGACGGTTATTCCGAATTGGGTAAAATAGATGCCCGCTCGCTGGGAGCGCATTCTTATTTGCGCTTGAGCGACTACAGCAAATTGACGGGAGAGTTTCACACGATCAGTGAATTCCGCCGTGGTGGCGATCGTATCGATTTGCCTCCTCACGTAGTGGGTGTAGCTGAACAAACTGACCATAGCGTATTTAGCGGAAACTTGAAATACGATCTCTTCTCTTCCAACTATAAACACCACTTCCAGGCTTATACTTCCGGACAGATCGTAAATCGCAAGAGCTATTACGGAGGTATCGGAGAGATTGACGTCAATGGCCACCCCGGTGGTACGGAAGGCTACCCTATCCCTCAAGATCAATACGGCAATAATTATGGCGTGACCAAAGGCAAGACATATATGGGCGGTATCCAGTACAGCTACGACTTGGACAAATTCCTCCTCATGCCTTCGCAACTTTTGTTCGGAGCCGAATATACGCGTGATGAACTCAATGACGTGATGCCCATCCTTTCATGGCAGACCGGCGAGGATGCCAATGGGAATACCATTCCCCTCTATCCCGAATTGGATCAGAATATCAACAACTACAGCCTATTCGGTCAGAACGAATGGAAAAATGACAGATGGAGCATCCTTGTTGGCGCTCGCTTGGACAAGCATAGCGAAGTCAAGGATATGATTCTGAGTCCTCGTACCACACTGCGTTTCAACGTGAATCCGGACATCAACCTGCGCGCTACATATGCAAAAGGGTTCCGCGCACCGCAGGTATTCGATGAAGACTTGCACGTAGGGGTTGTAGGCGGTGAGGCACAGAAAGTATTCAACGATCCGAACCTCAAGCCTGAAATTTCTCATGCATTCAGTTTGAGTGCCGATATGTATCATCGTTTCGGTAACGTCCAGACCAACTTCCTTGTGGAAGGCTTCTATACTCGTTTGCTGGATGTATTCACCAACGAGGAGCAGCCTGATCAGCACGATGGCATCAAACGCTACACGCGTATCAACGGTAGCGGAGCCAAAGTATTCGGTCTCAATCTGGAAGGTAAGGTCGCATACAAGTCCTTCCAGCTCCAAGCCGGTCTTACCCTGGCCAGCAACAAATACGACGAAGCACAGGAGTGGGGTCTGAATACGGTGAAAGACACCAACGGAGCTTTTGTTACCGAGGCCAATGCAAATGGACAACAGGAATACAAGAACGAATCCATGACGGATACGCAGATCACCCGTACCCCCAGCGTATACGGTTATTTTACTTTGGCCTACAATCCTGCTCACTCATGGAACATAGCCCTTACGGGAGCATATACCGGTCAGATGTATGTACCCCACGCTATCGAATATGGTGTGAAGTCTGCCGAACTGGATATTATGCAGAACAATCCTGAGATTACCGACGAAACCGGAAAGGCTCCCCGTATTGATGAGCTGAAGAAGACACCTGCATTCTTCGATTTGGGCTTGAAAGTGGGTTATGACTTCCACGTATTCCAGGCTACTGAGGTTCAACTCTATGTAGGTATGAACAATATCTTCAACTCTTTCCAGAAGGACTTCGATCGTGGAGCTGCACGTGACAGCGGATATATCTATGGTCCTACGCAGCCGCGTACAGGCTACATGGGCTTGGTAGTGAAGTTC","5.80","-14.20","94450","MIGKKIFFILLALIAFSGLNAATDTEFKYPTDANIIGHVKDSKTGEHLVGITIAIKGTTFGTSTDATGHYYLRNLRPGEITLIMRGMGYKSQERVVRVEKDKTIEVNFEAEEDAINLDEVVISANRELTLRRLAPTLVNVLNEKVFSQVNASNLAQGLSFQPGVRVENNCQNCGFNQVRINGLDGRYAQILIDSRPIMSALAGVYGLEQIPANMIERVEVVRGGGSALYGSSAIAGVVNIITKEPSHNSFTFNESLSFTGFSKLDNNTNFNASIVSDDNRAGAMVFGQARYRNHWDANNDGYSELGKIDARSLGAHSYLRLSDYSKLTGEFHTISEFRRGGDRIDLPPHVVGVAEQTDHSVFSGNLKYDLFSSNYKHHFQAYTSGQIVNRKSYYGGIGEIDVNGHPGGTEGYPIPQDQYGNNYGVTKGKTYMGGIQYSYDLDKFLLMPSQLLFGAEYTRDELNDVMPILSWQTGEDANGNTIPLYPELDQNINNYSLFGQNEWKNDRWSILVGARLDKHSEVKDMILSPRTTLRFNVNPDINLRATYAKGFRAPQVFDEDLHVGVVGGEAQKVFNDPNLKPEISHAFSLSADMYHRFGNVQTNFLVEGFYTRLLDVFTNEEQPDQHDGIKRYTRINGSGAKVFGLNLEGKVAYKSFQLQAGLTLASNKYDEAQEWGLNTVKDTNGAFVTEANANGQQEYKNESMTDTQITRTPSVYGYFTLAYNPAHSWNIALTGAYTGQMYVPHAIEYGVKSAELDIMQNNPEITDETGKAPRIDELKKTPAFFDLGLKVGYDFHVFQATEVQLYVGMNNIFNSFQKDFDRGAARDSGYIYGPTQPRTGYMGLVVKF","763723 761180","TIGR ID: PG0707","outer membrane protein, TonB dependent receptor","Outer membrane, Cytoplasm","Thise sequence corresponds to the previously sequenced AF237554 in GenBANK.This sequence corresponds to BT0504.","
InterPro
IPR000531
Domain
TonB-dependent receptor
PF00593\"[528-848]TTonB_dep_Rec
InterPro
IPR008969
Domain
Carboxypeptidase regulatory region
SSF49464\"[34-113]TCarboxypepD_reg
InterPro
IPR012910
Domain
TonB-dependent receptor, plug
PF07715\"[132-237]TPlug
noIPR
unintegrated
unintegrated
G3DSA:2.170.130.10\"[110-242]TG3DSA:2.170.130.10
G3DSA:2.40.170.20\"[245-848]TG3DSA:2.40.170.20
SSF56935\"[118-848]TSSF56935


","BeTs to 4 clades of COG1629COG name: Outer membrane receptor proteins, mostly Fe transportFunctional Class: PThe phylogenetic pattern of COG1629 is -----q-CE--HUJ-------Number of proteins in this genome belonging to this COG is 8","No significant hit to the Blocks database.","Residues 178-244 are 50% similar to a (RECEPTOR PROTEIN OUTER MEMBRANE PRECURSOR SIGNAL TONB) protein domain (PD000492) which is seen in CIRA_ECOLI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Mon Jun 27 10:49:41 2005","Mon Jun 27 10:49:41 2005","Tue Dec 2 16:36:27 2003","Wed Nov 7 13:48:26 2001","","Tue Apr 3 13:04:11 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 9-848 share 40% identity with PG1752, tonB linked outer membrane receptor.Shorter segments show similarity to:PG0601, tonB linked outer membrane receptor,PG1358, tonB dependent receptor HmuR (or HemR),PG0582, tonB linked receptor,PG1242, tonB linked outer membrane receptor,PG0899, conserved hypothetical protein.","Mon Apr 30 19:01:24 MDT 2001","Mon Jun 27 10:49:41 2005","-36% similar to PDB:1FEP FERRIC ENTEROBACTIN RECEPTOR (E_value = 3.5E_11);-55% similar to PDB:1NQE OUTER MEMBRANE COBALAMIN TRANSPORTER (BTUB) FROM E. COLI (E_value = 7.8E_11);-55% similar to PDB:1NQF OUTER MEMBRANE COBALAMIN TRANSPORTER (BTUB) FROM E. COLI, METHIONINE SUBSTIUTION CONSTRUCT FOR SE-MET SAD PHASING (E_value = 7.8E_11);-55% similar to PDB:1NQG OUTER MEMBRANE COBALAMIN TRANSPORTER (BTUB) FROM E. COLI, WITH BOUND CALCIUM (E_value = 7.8E_11);-55% similar to PDB:1NQH OUTER MEMBRANE COBALAMIN TRANSPORTER (BTUB) FROM E. COLI, WITH BOUND CALCIUM AND CYANOCOBALAMIN (VITAMIN B12) SUBSTRATE (E_value = 7.8E_11);","","","Residues 132 to 848 (E-value = 2.1e-40) place PG0637 in the TonB_dep_Rec family which is described as TonB dependent receptor (PF00593)","Tue Apr 3 13:04:11 MDT 2001","34540500","","","","Mon Jun 27 10:49:41 2005","","1","","","PG0707" "PG0639","764719","763892","828","ATGAAAAAAACAATTGCAATTATCGCCTCAGCCCTCTTGGCTTTAGGAGCCGTCGGCTGTAAGAAAAATGCTGACACTACCGCTGTCAGTGAAAAGGATAGCATAGCCTTGTCCATGGGTATTTTGTACGGACAGGATTTTGCCAATCAGTTCGAAATGTCCCGCTTGCAAGGCCAGCCGATTGATTCGGTAGCTTTCTTGGACGGTTTCAAATATGGTATCGATACGACGCGCTTCTCGTACAATCTGGGAGCCATCTATGCTTCCAATATAGCTCGTCAGCTGGCTCATGATTCCATCGATATCGACAAGTTCTATGCAGCCATGCGTGCGGCTCTTCTTAAAGACACCGTATCTATCGCCATGAAGCCTGCAGATGCACAGGCTTTCATGCAACGAATCCAAGCCAAAAAGCAGCGAGAAAACAATATGAAGCAGTTTGGCCAGAACATCGAAAAGGGTAATGAATACATCGATACCTTTAAAAAAGAAGATGGTGTAACTGTTACGACAAGTGGTCTGGCATACAAGACTCTTCAGGAAGGTACGGGAGCTACTCCCTCTTTGGCCGATACTGTACGTGTCAAGTATGTGGGTACTCTGGTCGATGGTAAAGAGTTCGACAAAAACGAAGAAGGAATCGAATTTGCCGTTACCGGTGTGATTAAAGGCTGGACGGAGATGCTCCAACTCATGAAGGTCGGTCAGAAAGTTCGCGTGGTAATCCCACAGGAGCTGGCTTATGGGGAGACCGGCAACTATACCATCGAACCGTTCTCTACCCTGACGTTCGAGATGGAACTTATCGGGATCAAGCCCGGGAAAAAG","7.30","0.20","30264","MKKTIAIIASALLALGAVGCKKNADTTAVSEKDSIALSMGILYGQDFANQFEMSRLQGQPIDSVAFLDGFKYGIDTTRFSYNLGAIYASNIARQLAHDSIDIDKFYAAMRAALLKDTVSIAMKPADAQAFMQRIQAKKQRENNMKQFGQNIEKGNEYIDTFKKEDGVTVTTSGLAYKTLQEGTGATPSLADTVRVKYVGTLVDGKEFDKNEEGIEFAVTGVIKGWTEMLQLMKVGQKVRVVIPQELAYGETGNYTIEPFSTLTFEMELIGIKPGKK","764719 763892 [Shorter 836 783 99]","PG0639 belongs to a cluster of adjacent genes coding on the same strand, PG0639-PG0641, with significant similarity and the same function.Ross, et al.(2001) select PG0639 as one of fifteen vaccine candidate antigens, based on in vitro and in vivo laboratory studies of 120 candidates screened by bioinformatics techniques from the whole W50 genome.TIGR ID: PG0708","fkbP-type peptidyl-prolyl cis-trans isomerase","Periplasm, Cytoplasm","PG039is essentially identical to previously sequenced AAD51070AAD51070 in GenBank and has numerous significant hits including to E.coli (gb|AAC76372,gb|AAC41459,gb|AAA58144), Legionella israelensis (gb|AAC45692) and Vibrio cholerae (gb|AAF93527).","
InterPro
IPR000774
Domain
Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal
PD001516\"[138-180]TFKBP_Nterm
PF01346\"[128-178]TFKBP_N
InterPro
IPR001179
Domain
Peptidyl-prolyl cis-trans isomerase, FKBP-type
PTHR10516\"[177-275]TPPIase_FKBP
PF00254\"[182-269]TFKBP_C
PS50059\"[190-272]TFKBP_PPIASE
noIPR
unintegrated
unintegrated
G3DSA:3.10.50.40\"[136-276]TG3DSA:3.10.50.40
PTHR10516:SF17\"[177-275]TPTHR10516:SF17
PS51257\"[1-20]TPROKAR_LIPOPROTEIN
SSF54534\"[74-274]TSSF54534


","BeTs to 5 clades of COG0545COG name: FKBP-type peptidyl-prolyl cis-trans isomerases 1Functional Class: OThe phylogenetic pattern of COG0545 is ----Y--cE--h-----lin-Number of proteins in this genome belonging to this COG is 4","***** IPB001179 (FKBP-type peptidyl-prolyl cis-trans isomerase (PPIase)) with a combined E-value of 2.7e-14. IPB001179A 216-249 IPB001179B 256-268","Residues 179-271 are 53% similar to a (PROTEIN ISOMERASE CIS-TRANS PPIASE PEPTIDYL-PROLYL) protein domain (PD000420) which is seen in FKBB_ECOLI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Wed Nov 7 14:22:37 2001","Mon Dec 18 17:52:00 MST 2000","Mon Dec 18 17:52:00 MST 2000","Wed Nov 7 14:22:37 2001","Tue Apr 3 13:11:46 MDT 2001","Tue Apr 3 13:11:46 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues ~75-273 share 35% identity with adjacent genes upstream, PG0640 and PG0641, which are both fkbP-type peptidyl-prolyl cis-trans isomerases.","Tue Apr 3 13:11:46 MDT 2001","Tue Apr 3 13:11:46 MDT 2001","-55% similar to PDB:1Q6U Crystal structure of FkpA from Escherichia coli (E_value = 5.2E_31);-55% similar to PDB:1Q6H Crystal structure of a truncated form of FkpA from Escherichia coli (E_value = 9.8E_30);-55% similar to PDB:1Q6I Crystal structure of a truncated form of FkpA from Escherichia coli, in complex with immunosuppressant FK506 (E_value = 9.8E_30);-47% similar to PDB:1FD9 CRYSTAL STRUCTURE OF THE MACROPHAGE INFECTIVITY POTENTIATOR PROTEIN (MIP) A MAJOR VIRULENCE FACTOR FROM LEGIONELLA PNEUMOPHILA (E_value = 5.2E_23);-52% similar to PDB:1JVW TRYPANOSOMA CRUZI MACROPHAGE INFECTIVITY POTENTIATOR (TCMIP) (E_value = 4.3E_17);","","","Residues 182 to 269 (E-value = 1e-31) place PG0639 in the FKBP_C family which is described as FKBP-type peptidyl-prolyl cis-trans isomerase (PF00254)","Tue Apr 3 13:11:46 MDT 2001","34540501","","Ross BC, Czajkowski L, Hocking D, Margetts M, Webb E, Rothel L, Patterson M, Agius C, Camuglia S, Reynolds E, Littlejohn T, Gaeta B, Ng A, Kuczek ES, Mattick JS, Gearing D, Barr IG, Identification of vaccine candidate antigens from a genomic analysis of Porphyromonas gingivalis, Vaccine 2001 Jul 20;19(30): 4135-42, PMID: 11457538.Ross,B.C., Barr,I., Patterson,M., Agius,C., Rothel,L., Margetts,M., Hocking,D. and Webb,E, Porphyromonas gingivalis polypeptides and nucleic acids, Patent: Australia (AU 98/01023)-PCT 10-DEC-1998; CSL Ltd; 45 Poplar Road; R&D; Parkville, Victoria; Australia.","","Wed Nov 7 14:22:37 2001","","1","","","PG0708" "PG0640","765508","764750","759","ATGATCATTGCCGGCTTAGCCTTTTTAGTGGCCGGATTATCTGCCTTTGCAAAAAAACCGCCCAAAAAGGATGAGGTGCAAACCGTGAAGCCTATCGTGACTTCTGCTGACTCTGTGGCATACGCTTTCGGTATAAGCGGAGCAATAAATTTCAATGACTATACCGGACGGATGCCGGGCGATTCTCTGGATCGTGCCCTGATTCTCCGAGCATTCGAAGAAGTACTCATGGGAAAGAGCACTGCTATCTCTTCCCAAAATGCGGACGAAATGATCAAGAAATACTTCAAGGAAGTACAGGACAGACTCAAAGCCGAAAACTTGGCAGCAGGCAAAGCTTATCAGGAAGAATATCGCAAGCAGCCGGGCGTTAAGGCTACCGAAAGCGGTTTGTTGTATCGTGTCTTGAAGGAAGGGGAAGGACCTCGCCCGACGGTTCAGGATACGGTCGTTGTTCATTATGTGGGCAAGAACATTGAAGGGAAAGAATTCGACAGCTCTTATTCTCGCAACGAGCCGGCAAAGTTCAGCCTCCTGCAAGTGATTCCGGGATGGACTGAGGGTGTTTGTCTGATGCAAAAGGGTGCCAAGTACGAATTTGTTATCCCGACCGAACTGGGATATGGCGAACGTAGCATGGGCGAACTTCTCAAGCCGAACTCTACGCTTTTCTTCGAAGTAGAACTACTCGAAATCAAGCCTTTCGTAGAGAAGCCGGCAAAGCCTATCCCGGCAAAACCTACTCCAAATAAGAAAAAC","9.40","3.21","27916","MIIAGLAFLVAGLSAFAKKPPKKDEVQTVKPIVTSADSVAYAFGISGAINFNDYTGRMPGDSLDRALILRAFEEVLMGKSTAISSQNADEMIKKYFKEVQDRLKAENLAAGKAYQEEYRKQPGVKATESGLLYRVLKEGEGPRPTVQDTVVVHYVGKNIEGKEFDSSYSRNEPAKFSLLQVIPGWTEGVCLMQKGAKYEFVIPTELGYGERSMGELLKPNSTLFFEVELLEIKPFVEKPAKPIPAKPTPNKKN","FkbP-type peptidyl-prolyl cis-trans isomerase(MIP-like protein)","PG0640 belongs to a cluster of adjacent genes coding on the same strand, PG0639-PG0641, with significant similarity and the same function.This mip-like peptidyl-prolyl cis-trans isomerase(PPIASE) is an outer membrane protein thatcatalyzes cis-trans isomerization of prolineimidic peptide bonds in oligopeptides. From PubMed: 7516906 (see reference above)The Mip ('macrophage infectivity potentiator') protein of Legionella pneumophila has been shown to be an essential virulence factor, exhibiting peptidyl-prolyl cis/trans isomerase (PPIase) activity that can be inhibited by the immunosuppressant FK506.From Prosite PDOC00426: FKBP is the major high-affinity binding protein,in vertebrates, for the immunosuppressive drugFK506. It exhibits peptidyl-prolyl cis-transisomerase activity (EC 5.2.1.8) (PPIase orrotamase). PPIase is an enzyme that acceleratesprotein folding by catalyzing the cis-transisomerization of proline imidic peptide bonds inoligopeptides.TIGR ID: PG0709","fkbP-type peptidyl-prolyl cis-trans isomerase (MIP-like protein)","Periplasm","This sequence is similar to CT541 of Chlamydia trachomatis.Numerous moderately significant hits in gapped BLAST to peptidyl-prolyl cis-trans isomerases, macrophage infectivity potentiators. Residues 37-233 are 42% similar to peptidyl-prolyl cis-trans isomerase (AE004124) of Vibrio cholerae, residues 28-232 are 33% similar to macrophage infectivity potentiator (U92229) of Legionella londiniensis, residues 34-233 are 33% similar to MIP (U92214) of Legionella nautarum.","
InterPro
IPR000774
Domain
Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal
PD001516\"[106-145]TFKBP_Nterm
PF01346\"[105-135]TFKBP_N
InterPro
IPR001179
Domain
Peptidyl-prolyl cis-trans isomerase, FKBP-type
PTHR10516\"[134-236]TPPIase_FKBP
PF00254\"[139-230]TFKBP_C
PS50059\"[147-233]TFKBP_PPIASE
noIPR
unintegrated
unintegrated
G3DSA:3.10.50.40\"[93-232]TG3DSA:3.10.50.40
PTHR10516:SF17\"[134-236]TPTHR10516:SF17
SSF54534\"[31-233]TSSF54534


","BeTs to 5 clades of COG0545COG name: FKBP-type peptidyl-prolyl cis-trans isomerases 1Functional Class: OThe phylogenetic pattern of COG0545 is ----Y--cE--h-----lin-Number of proteins in this genome belonging to this COG is 4","***** IPB001179 (FKBP-type peptidyl-prolyl cis-trans isomerase (PPIase)) with a combined E-value of 3.5e-19. IPB001179A 176-209 IPB001179B 217-229","Residues 139-234 are 54% similar to a (PROTEIN ISOMERASE CIS-TRANS PPIASE PEPTIDYL-PROLYL) protein domain (PD000420) which is seen in FKBY_HAEIN.","","Thu Jun 14 13:14:15 MDT 2001","","Thu Jun 14 13:14:15 MDT 2001","Thu Jun 14 13:14:15 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:14:15 MDT 2001","Thu Jun 14 13:14:15 MDT 2001","Mon Dec 18 17:59:20 MST 2000","Tue Jun 19 14:10:45 MDT 2001","Wed Apr 18 12:12:59 MDT 2001","Tue Jun 19 14:10:45 MDT 2001","Mon Dec 18 17:59:20 MST 2000","Tue Jun 19 14:03:25 MDT 2001","Tue Jun 19 14:03:25 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues ~37-234 share 41% and 35% identity with adjacent genes, PG0641 and PG0639, respectively. All three code for fkbP-type peptidyl-prolyl cis-trans isomerase.","Tue Jun 19 14:10:45 MDT 2001","Fri Mar 9 13:58:19 MST 2001","-63% similar to PDB:1Q6U Crystal structure of FkpA from Escherichia coli (E_value = 2.0E_34);-63% similar to PDB:1Q6H Crystal structure of a truncated form of FkpA from Escherichia coli (E_value = 1.3E_33);-63% similar to PDB:1Q6I Crystal structure of a truncated form of FkpA from Escherichia coli, in complex with immunosuppressant FK506 (E_value = 1.3E_33);-54% similar to PDB:1FD9 CRYSTAL STRUCTURE OF THE MACROPHAGE INFECTIVITY POTENTIATOR PROTEIN (MIP) A MAJOR VIRULENCE FACTOR FROM LEGIONELLA PNEUMOPHILA (E_value = 7.0E_32);-55% similar to PDB:1JVW TRYPANOSOMA CRUZI MACROPHAGE INFECTIVITY POTENTIATOR (TCMIP) (E_value = 4.7E_20);","","","Residues 139 to 230 (E-value = 1.9e-36) place PG0640 in the FKBP_C family which is described as FKBP-type peptidyl-prolyl cis-trans isomerase (PF00254)","Tue Jun 19 14:03:25 MDT 2001","34540502","","","Ludwig B, Rahfeld J, Schmidt B, Mann K, Wintermeyer E, Fischer G, Hacker J. Characterization of Mip proteins of Legionella pneumophila. FEMS Microbiol Lett. (1994) May 1;118(1-2):23-30. PubMed: 7516906.","","Wed Jun 6 16:01:12 MDT 2001","1","","","PG0709" "PG0641","766125","765541","585","ATGGATAAAGTGAGCTATGCTCTGGGATTGAGCATCGGTAATAATTTCAAGTCTTCGGGCATCGACAGCGTCGTTATGGATGATTTCATGCAAGGTCTGTCTGATGTACTGGAAGAAAAAGCCCCTCAGCTCTCGTATGACGAGGCCAAGCGCGAAATAGAGGCGTATTTCATGGATTTGCAGCAGAAGGCTGTCAAACTGAACAAAGAGGCCGGAGAAGAATTCCTCAAGATAAATGCACACAAGGAAGGTGTGACGACCTTACCGAGCGGCTTGCAATACGAAGTCATTAAGATGGGAGAGGGCCCGAAACCCACCCTTTCGGACACGGTAACCTGTCATTATCACGGTACGCTCATCAACGGTATCGTTTTCGATAGCTCTATGGACAGGGGAGAACCGGCCAGTTTCCCTCTAAGAGGAGTTATAGCCGGCTGGACGGAGATTCTTCAATTAATGCCTGTAGGATCCAAGTGGAAAGTAACTATACCGAGCGATCTGGCGTATGGAGATCGTGGTGCCGGCGAACATATCAAACCGGGTAGTACGCTCATTTTTATAATCGAATTATTGAGTATCAACAAA","4.90","-7.08","21353","MDKVSYALGLSIGNNFKSSGIDSVVMDDFMQGLSDVLEEKAPQLSYDEAKREIEAYFMDLQQKAVKLNKEAGEEFLKINAHKEGVTTLPSGLQYEVIKMGEGPKPTLSDTVTCHYHGTLINGIVFDSSMDRGEPASFPLRGVIAGWTEILQLMPVGSKWKVTIPSDLAYGDRGAGEHIKPGSTLIFIIELLSINK","766125 765541","PG0641 belongs to a cluster of adjacent genes coding on the same strand, PG0639-PG0641, with significant similarity and the same function.TIGR ID: PG0710","fkbP-type peptidyl-prolyl cis-trans isomerase (MIP-like protein)","Outer membrane, Cytoplasm","PG0641 has been previously sequenced from the W50 strain and stored in GenBank as AAD33931. Using gapped BLAST it shows strong similarity to macrophage infectivity potentiator proteins in numerous Legionella species, a peptidyl-prolyl cis-trans isomerase in Vibrio cholerae (AAF95709.1) and E.coli (P39311, gb|AAC77164, gb|AAA97103).","
InterPro
IPR000774
Domain
Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal
PD001516\"[62-108]TFKBP_Nterm
PF01346\"[1-96]TFKBP_N
InterPro
IPR001179
Domain
Peptidyl-prolyl cis-trans isomerase, FKBP-type
PTHR10516\"[95-193]TPPIase_FKBP
PF00254\"[100-191]TFKBP_C
PS50059\"[108-194]TFKBP_PPIASE
noIPR
unintegrated
unintegrated
G3DSA:3.10.50.40\"[54-193]TG3DSA:3.10.50.40
PTHR10516:SF17\"[95-193]TPTHR10516:SF17
SSF54534\"[1-193]TSSF54534


","BeTs to 5 clades of COG0545COG name: FKBP-type peptidyl-prolyl cis-trans isomerases 1Functional Class: OThe phylogenetic pattern of COG0545 is ----Y--cE--h-----lin-Number of proteins in this genome belonging to this COG is 4","***** IPB001179 (FKBP-type peptidyl-prolyl cis-trans isomerase (PPIase)) with a combined E-value of 8.8e-22. IPB001179A 137-170 IPB001179B 178-190","Residues 2-96 are 40% similar to a (MACROPHAGE INFECTIVITY POTENTIATOR) protein domain (PD001516) which is seen in O32828_BBBBB.Residues 3-96 are 31% similar to a (FKBP-TYPE 22 KD PEPTIDYL-PROLYL) protein domain (PD068408) which is seen in FKBB_ECOLI.Residues 97-193 are 62% similar to a (PROTEIN ISOMERASE CIS-TRANS PPIASE PEPTIDYL-PROLYL) protein domain (PD000420) which is seen in FKBB_ECOLI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Tue Apr 3 13:21:28 MDT 2001","Tue May 1 15:36:27 MDT 2001","Tue Dec 19 10:23:18 MST 2000","Tue Dec 19 10:23:18 MST 2000","Tue Apr 3 13:21:28 MDT 2001","Tue Apr 3 13:21:28 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 2-193 share 41% and 36% identity with adjacent genes, PG0640 and PG0641. All three are predicted fkbP-type peptidyl-prolyl cis-trans isomerases.","Tue Apr 3 13:21:28 MDT 2001","Tue Apr 3 13:21:28 MDT 2001","-60% similar to PDB:1FD9 CRYSTAL STRUCTURE OF THE MACROPHAGE INFECTIVITY POTENTIATOR PROTEIN (MIP) A MAJOR VIRULENCE FACTOR FROM LEGIONELLA PNEUMOPHILA (E_value = 1.0E_42);-59% similar to PDB:1Q6H Crystal structure of a truncated form of FkpA from Escherichia coli (E_value = 5.7E_30);-59% similar to PDB:1Q6I Crystal structure of a truncated form of FkpA from Escherichia coli, in complex with immunosuppressant FK506 (E_value = 5.7E_30);-59% similar to PDB:1Q6U Crystal structure of FkpA from Escherichia coli (E_value = 5.7E_30);-57% similar to PDB:1JVW TRYPANOSOMA CRUZI MACROPHAGE INFECTIVITY POTENTIATOR (TCMIP) (E_value = 4.7E_24);","","","Residues 1 to 96 (E-value = 5.4e-10) place PG0641 in the FKBP_N family which is described as Domain amino terminal to FKBP-type peptidyl-prolyl isomerase (PF01346)Residues 100 to 191 (E-value = 2.5e-43) place PG0641 in the FKBP_C family which is described as FKBP-type peptidyl-prolyl cis-trans isomerase (PF00254)","Tue Apr 3 13:21:28 MDT 2001","34540503","Tue Dec 19 10:23:18 MST 2000","Ross,B.C., Barr,I., Patterson,M., Agius,C., Rothel,L., Margetts,M., Hocking,D. and Webb,E., Porphyromonas gingivalis polypeptides and nucleic acids, Patent: Australia (AU 98/01023)-PCT 10-DEC-1998; CSL Ltd; 45 Poplar Road; R&D, Parkville, Victoria; Australia.","","Tue Dec 19 10:23:18 MST 2000","","1","","","PG0710" "PG0641.1","766195","766506","312","ATGGCAATATCTATCTGTGCACACTCCATCGGCAAGGCTTGCCGGTTATTCACAGATTACGGATTGCATCCATATCGACACTGTTCCTGTGGGCAGCTGTTTATTCGGAGCCGGTCGATTGGCACTGAAGCTGAAAGCGAAAGAATGAAAAATGAAAAACCTGTTTGGGGCTGGTCCCCGAATGTTTTTTTTATTTCCAAGCCATTCGTATCGTATCTGCACACCAATTACATGAATGGCGTGCTTAATTTTAATGCTCTCATTTATAGCTACTTATATTTTCGGAAAAAAGAGCTAAAACGACCCTCAAAC","","","12117","MAISICAHSIGKACRLFTDYGLHPYRHCSCGQLFIRSRSIGTEAESERMKNEKPVWGWSPNVFFISKPFVSYLHTNYMNGVLNFNALIYSYLYFRKKELKRPSN","","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm, Extracellular","No significant hits.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Tue Dec 19 10:32:31 MST 2000","Tue Dec 19 10:32:31 MST 2000","Tue Dec 19 10:32:31 MST 2000","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Tue Dec 19 10:32:31 MST 2000","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG0642","767222","766878","345","ATGAAGTATTTCCAAGAGGCAGATATTGCCGTGACCGTCTGTGACAAAACGGGCAAAATCATCGATATGAACGAACAGTCCCGTCAGGTAAACCTCAAGCCAGGTCAGGAGCTGATCGGCTCGAATGTATTGGACTGTCATCCCGAACCGGCTCGCTCCATGCTCGAAGAGATGATGCGTCAGGAGCGAAAGCACGTCTATACGATAGAGAAGAATGGGCGAAAGAAGCTGATCTATCAGATCCCCTGGTATGAAAAGGGGGAATATATGGGCTTCTTGGAGCTGTCGATGGTGATCCCTTTCGAAATGGAACACAAGATTCGTACACCGAAGCCGGCAAATGAT","6.80","-0.38","13518","MKYFQEADIAVTVCDKTGKIIDMNEQSRQVNLKPGQELIGSNVLDCHPEPARSMLEEMMRQERKHVYTIEKNGRKKLIYQIPWYEKGEYMGFLELSMVIPFEMEHKIRTPKPAND","767222 766878","TIGR ID: PG0712","hypothetical protein (possible PAS/PAC domain)","Cytoplasm","No significant hits.","
InterPro
IPR013656
Domain
PAS fold-4
PF08448\"[4-61]TPAS_4
noIPR
unintegrated
unintegrated
SSF55785\"[2-61]TSSF55785


","BeTs to 3 clades of COG2202COG name: PAS/PAC domainFunctional Class: TThe phylogenetic pattern of COG2202 is AMT--QvCEBr-------i--Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Dec 19 10:38:14 MST 2000","Tue Dec 19 10:38:14 MST 2000","Tue Dec 19 10:38:14 MST 2000","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Tue Dec 19 10:38:14 MST 2000","Wed May 2 11:00:07 MDT 2001","-65% similar to PDB:1F8W CRYSTAL STRUCTURE OF NADH PEROXIDASE MUTANT: R303M (E_value = );-65% similar to PDB:1JOA NADH PEROXIDASE WITH CYSTEINE-SULFENIC ACID (E_value = );-65% similar to PDB:1NHP CRYSTALLOGRAPHIC ANALYSES OF NADH PEROXIDASE CYS42ALA AND CYS42SER MUTANTS: ACTIVE SITE STRUCTURE, MECHANISTIC IMPLICATIONS, AND AN UNUSUAL ENVIRONMENT OF ARG303 (E_value = );-65% similar to PDB:1NPX STRUCTURE OF NADH PEROXIDASE FROM STREPTOCOCCUS FAECALIS 10C1 REFINED AT 2.16 ANGSTROMS RESOLUTION (E_value = );-65% similar to PDB:2NPX NADH BINDING SITE AND CATALYSIS OF NADH PEROXIDASE (E_value = );","","","No significant hits to the Pfam 11.0 database","Wed May 2 11:00:07 MDT 2001","34540505","","","","","","1","","","PG0712" "PG0643","767840","767247","594","ATGTTACGAGTATTAGTTCTTGACAACCGCGATTCGTTCGTTTACAATCTGGTACAACTGCTTCGAGAAGCTCCGAACTGTCGGTTCGATGTAGTCCGAGGAGATGCTATCCCCTGGGGCAATTTGTCGGATTATCAAGGTATCCTGTTAAGCCCCGGACCGGGATTGCCCTCCGAGGCTTGCGGCCAAATGGAACTGATCCAAGCCGCAGCGGCCACACACTCCATCTTGGGCGTCTGCCTGGGGCATCAGGCTCTGGCAGAGTTTTTCGGCGGCCGACTACGGCGAATCGAACATCCTTTCCACGGGCATGATTCGCCAATACGGCTGACCGAGCCGGACGAGCCTTTTTGGAAAGGCGTACCGAACGATGCCGTTGTCGGGCGTTACCATAGCTGGGTGGTGGAGGATACCGACTTGCCGGACTGCCTGATCCCCACGGCTTGGAGCGATGATGACGGCGTATTGATGGCCATGCGCCACAAGCTACTGCCACACTATGGTGTTCAGTTCCACCCCGAAAGCATTATATCCGATTGCGGAGAACGACTGATCCGGAACTGGCTGGACATAGCGACACAAATCCGAAAAACA","5.50","-7.07","22199","MLRVLVLDNRDSFVYNLVQLLREAPNCRFDVVRGDAIPWGNLSDYQGILLSPGPGLPSEACGQMELIQAAAATHSILGVCLGHQALAEFFGGRLRRIEHPFHGHDSPIRLTEPDEPFWKGVPNDAVVGRYHSWVVEDTDLPDCLIPTAWSDDDGVLMAMRHKLLPHYGVQFHPESIISDCGERLIRNWLDIATQIRKT","767849 767247","TIGR ID: PG0713","anthranilate synthase component II/glutamine amidotransferase","Cytoplasm","Using gapped BLAST PG0643 shows hundreds of strong hits to anthranilate synthase component II proteins including Thermotoga maritima (CAA52203), Haemophilus influenzae (AAC22824) and Haemophilus ducreyi (AAF33779).","
InterPro
IPR000991
Domain
Glutamine amidotransferase class-I
PF00117\"[5-191]TGATase
InterPro
IPR001317
Domain
Carbamoyl-phosphate synthase, GATase region
PR00099\"[45-59]T\"[75-91]T\"[92-109]TCPSGATASE
InterPro
IPR006220
Domain
Anthranilate synthase component II/delta crystallin
PR00097\"[4-18]T\"[48-57]T\"[75-86]T\"[100-108]T\"[122-134]T\"[168-181]TANTSNTHASEII
InterPro
IPR006221
Domain
Glutamine amidotransferase of anthranilate synthase
TIGR00566\"[3-191]TtrpG_papA
InterPro
IPR011702
Domain
Glutamine amidotransferase superfamily
PR00096\"[48-57]T\"[75-86]T\"[168-181]TGATASE
InterPro
IPR012998
Active_site
Glutamine amidotransferase, class I, active site
PS00442\"[75-86]?GATASE_TYPE_I
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.880\"[2-195]TG3DSA:3.40.50.880
PIRSF001375\"[3-197]TGuaA_PabA
PTHR11922\"[3-191]TPTHR11922
SSF52317\"[1-197]TSSF52317


","BeTs to 11 clades of COG0512COG name: Anthranilate/para-aminobenzoate synthases component IFunctional Class: E,HThe phylogenetic pattern of COG0512 is amt-YqvcEbrHuj-------Number of proteins in this genome belonging to this COG is 1","***** IPB000991 (Glutamine amidotransferase class-I) with a combined E-value of 3e-13. IPB000991A 75-84 IPB000991B 165-176","Residues 48-189 are 47% similar to a (SYNTHASE GLUTAMINE BIOSYNTHESIS AMIDOTRANSFERASE) protein domain (PD000306) which is seen in YB71_HAEIN.","","Thu Jun 14 13:14:52 MDT 2001","","Thu Jun 14 13:14:52 MDT 2001","Thu Jun 14 13:14:52 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:14:52 MDT 2001","Thu Jun 14 13:14:52 MDT 2001","","","Wed May 2 11:07:26 MDT 2001","Tue Dec 19 10:57:19 MST 2000","Tue Dec 19 10:57:19 MST 2000","Tue Apr 3 13:25:56 MDT 2001","Tue Apr 3 13:25:56 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 37-175 are 27% similar to PG0482, carbamoyl-phosphate synthase, small chain, and residues 3-191 are 27% similar to PG0531, GMP synthase.","Thu Jun 14 16:30:13 MDT 2001","Tue Apr 3 13:25:56 MDT 2001","-56% similar to PDB:1QDL THE CRYSTAL STRUCTURE OF ANTHRANILATE SYNTHASE FROM SULFOLOBUS SOLFATARICUS (E_value = 2.1E_27);-52% similar to PDB:1I1Q STRUCTURE OF THE COOPERATIVE ALLOSTERIC ANTHRANILATE SYNTHASE FROM SALMONELLA TYPHIMURIUM (E_value = 2.6E_22);-51% similar to PDB:1I7Q ANTHRANILATE SYNTHASE FROM S. MARCESCENS (E_value = 1.3E_21);-51% similar to PDB:1I7S ANTHRANILATE SYNTHASE FROM SERRATIA MARCESCENS IN COMPLEX WITH ITS END PRODUCT INHIBITOR L-TRYPTOPHAN (E_value = 1.3E_21);-50% similar to PDB:2D7J Crystal Structure Analysis of Glutamine Amidotransferase from Pyrococcus horikoshii OT3 (E_value = 6.9E_15);","","","Residues 5 to 192 (E-value = 1.3e-53) place PG0643 in the GATase family which is described as Glutamine amidotransferase class-I (PF00117)","Tue Apr 3 13:25:56 MDT 2001","34540506","","","Kim CW, Markiewicz P, Lee JJ, Schierle CF, Miller JH, Studies of the hyperthermophile Thermotoga maritima by random sequencing of cDNA and genomic libraries. Identification and sequencing of the trpEG (D) operon, J Mol Biol 1993 Jun 20;231(4):960-81, PubMed: 7685830.","","Tue Dec 19 10:57:19 MST 2000","1","","","PG0713" "PG0644","768762","768019","744","ATGGCGATGCAATTAGAAATTTGTGCCAATTCGGCTGCCAGCTGTCGGCAGGCCGAGTTGGGTGGGGCTACTCGTGTAGAGCTTTGTGCCGGTATTCCTGAGGGCGGTACTACACCTTCTGCCGGAGAAATGGCTGTGGCTCGCAGTCTGATAGCTATTCCTATCCATGTCATAATACGTCCGCGTGCAGGGGATTTCGTTTACTCATCGGAGGAGATAGAAGCCATGTGCTACGATATTCGTGTAGTCCGCAGCCTCGGTATGGAAGGCGTTGTCTTTGGATGTCTCACACCGGAGGGGGGCTATGACGAGGAGGCAAATTCGCGTCTTTTGAAAGAGGCGCAAGGGATGCAGCTCACTTTTCACCGAGCTTTCGATGTCTGTGCTGCTCCGTTTGAGATGCTCGAAAAGCTGATTGCCGCCGGCTTCCATCGTGTACTTACGTCCGGTTGTGCCCCTACGGCATTGGAGGGTAAGGACATGATCGGAGCACTAAACAAACAAGCTACCGGACGAATCGGCATCATGGCCGGCTGCGGTATACGATTGGGCAATATAGAAACGCTGGCTCGCCATACCGGGATCACCCAATTCCACAGTTCCTTGCGCCATGATATTCCGAGTAGCATGCGATTTCGGCGGCCTGAAGTCAGTATGGGCGGTACAGTGAAAATAGATGAATACAGCCGTCCTGAGACATCGGCCGACATGGTCCGTCAGGCAGTCGATATATTACAAGGAATA","6.00","-3.93","26605","MAMQLEICANSAASCRQAELGGATRVELCAGIPEGGTTPSAGEMAVARSLIAIPIHVIIRPRAGDFVYSSEEIEAMCYDIRVVRSLGMEGVVFGCLTPEGGYDEEANSRLLKEAQGMQLTFHRAFDVCAAPFEMLEKLIAAGFHRVLTSGCAPTALEGKDMIGALNKQATGRIGIMAGCGIRLGNIETLARHTGITQFHSSLRHDIPSSMRFRRPEVSMGGTVKIDEYSRPETSADMVRQAVDILQGI","768762 768019","TIGR ID: PG0714","possible copper homeostasis protein","Cytoplasm","Gapped BLAST shows 45% similarity to three Human CGI-32 proteins (NP_057044, CAB88199, XP_005810). Other hits include strong similarity to a copper homeostasis protein in Vibrio cholerae (gb|AAF93895), Xylella fastidiosa (gb|AAF84150) and E.coli ( dbj|BAA15691).","
InterPro
IPR005627
Family
CutC
G3DSA:3.20.20.380\"[2-245]TCutC
PTHR12598\"[1-248]TCutC
PF03932\"[3-204]TCutC
noIPR
unintegrated
unintegrated
SSF110395\"[3-246]TSSF110395


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 5-230 are 42% similar to a (PROTEIN COPPER HOMEOSTASIS CUTC) protein domain (PD038912) which is seen in CUTC_ECOLI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Dec 19 11:12:36 MST 2000","Tue Dec 19 11:12:36 MST 2000","Tue Dec 19 11:09:58 MST 2000","","Wed May 2 11:11:11 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Tue Dec 19 11:09:58 MST 2000","Wed May 2 11:11:11 MDT 2001","-52% similar to PDB:1TWD Crystal Structure of the Putative Copper Homeostasis Protein (CutC) from Shigella flexneri, Northeast Structural Genomics Target SfR33 (E_value = 3.1E_40);-52% similar to PDB:1X7I Crystal structure of the native copper homeostasis protein (cutCm) with calcium binding from Shigella flexneri 2a str. 301 (E_value = 3.1E_40);-52% similar to PDB:1X8C Crystal structure of the SeMet-derivative copper homeostasis protein (cutCm) with calcium binding from Shigella flexneri 2a str. 301 (E_value = 3.1E_40);-51% similar to PDB:2BDQ Crystal Structure of the Putative Copper Homeostasis Protein CutC from Streptococcus agalactiae, Northeast Strucural Genomics Target SaR15. (E_value = 2.1E_25);-41% similar to PDB:1AWB HUMAN MYO-INOSITOL MONOPHOSPHATASE IN COMPLEX WITH D-INOSITOL-1-PHOSPHATE AND CALCIUM (E_value = 2.1E_25);","","","Residues 3 to 204 (E-value = 4e-84) place PG0644 in the CutC family which is described as CutC family (PF03932)","Wed May 2 11:11:11 MDT 2001","34540507","Tue Dec 19 11:09:58 MST 2000","","","","","1","","","PG0714" "PG0645","769687","768770","918","ATGAAAAAATACCTTTTCGCCGAACAGGGTTTTGTGGAAAAGCCCGATTTCGGAGCAGACTGCTGGGTGTGTGTCGAAACTCCCGATGCAGAGGATATGAAGTTTCTGATCGACACACTTAATGTCCCCGAAGATTTTTTGTCTGATATAGCGGATGCCGATGAACGCCCACGCGTAGAGCATGATGGCGACTGGCATCTGACGATCTTGCGGATTCCTATCGAAAGTCGCCTGAGCGGTGTGCCTTACGTTACCGTACCGATGGGGATAGCTACCCGATCGGATGTAACGGTGAGCGTATGTTACCATCGCGCTCCCATGCTCGCCGACTTTCTGCTTCACACTCGGCGCAAACGAATCAAAGTCCTCAACCGGACAGAACTGGTACTAAGACTCATCTATTCTTCTGCCGTGTGGTTCCTGAAGTACCTGAAACAGATCAACAATGAGGTGACCATCTCCGAGCGAGAACTCGAACGCAGTATTCGCAACGAAGACCTCATTCACCTGATGATGCTTCAGAAGACTCTCGTTTACTTCAGTACTTCCATTCGCGGCAATGAAGCCGTACTGGGCAAAATAAGGGCTTCGGGAGAAAATCGGATCGACGAAGAGCTGGTGGAAGATGTGCGAATAGAACTGCGACAGGCCTATAATACTGTGAATATCTATAGCGACATCCTTTCCGGAACGACGGAAGCTCTGAGCGGAGTGATTTCGAACAACCTGAATACTATCATGAAGCGCATGACCACGATTTCCATCGTACTGATGCTCCCTACGCTGATTGCCAGTTTCTATGGAATGAATGTGCCCATTGCAGGCAGTGGGTTTCAGTATTCTTTCTTCATCATTGTGGGCGTGTCCGTCCTGCTTTCGATAATAGCCTTTGTCGTTTTCAGAAAAATAAAATGGTTC","6.10","-2.92","34955","MKKYLFAEQGFVEKPDFGADCWVCVETPDAEDMKFLIDTLNVPEDFLSDIADADERPRVEHDGDWHLTILRIPIESRLSGVPYVTVPMGIATRSDVTVSVCYHRAPMLADFLLHTRRKRIKVLNRTELVLRLIYSSAVWFLKYLKQINNEVTISERELERSIRNEDLIHLMMLQKTLVYFSTSIRGNEAVLGKIRASGENRIDEELVEDVRIELRQAYNTVNIYSDILSGTTEALSGVISNNLNTIMKRMTTISIVLMLPTLIASFYGMNVPIAGSGFQYSFFIIVGVSVLLSIIAFVVFRKIKWF","769687 768770","TIGR ID: PG0715","possible magnesium and cobalt transport protein","Inner membrane, Cytoplasm","Gapped BLAST shows significant hits to transport or membrane proteins including Deinococcus radiodurans (AAF12002), Lactococcus lactis ( CAA03990), and a magnesium transporter CorA in Lactococcus lactis (AAF17616).This sequence is similar to BT3414.","
InterPro
IPR002523
Family
Mg2+ transporter protein, CorA-like
PTHR21535:SF1\"[7-306]TMg2+_transptCorA
PF01544\"[20-306]TCorA
noIPR
unintegrated
unintegrated
PTHR21535\"[7-306]TPTHR21535


","BeTs to 8 clades of COG0598COG name: Mg and Co transportersFunctional Class: PThe phylogenetic pattern of COG0598 is am-kYqvCEBrhuj-------Number of proteins in this genome belonging to this COG is 1","***** PF01544 (CorA-like Mg2+ transporter protein) with a combined E-value of 1.5e-13. PF01544C 240-276","Residues 227-280 are 46% similar to a (PROTEIN MAGNESIUM COBALT TRANSPORT TRANSMEMBRANE CORA) protein domain (PD003039) which is seen in O32798_BBBBB.Residues 25-223 are 25% similar to a (PROTEIN ORFA PUTATIVE MEMBRANE) protein domain (PD038170) which is seen in O32798_BBBBB.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Dec 19 11:48:35 MST 2000","Mon Dec 22 11:00:27 2003","Tue Dec 19 11:37:33 MST 2000","Wed May 2 11:13:26 MDT 2001","Wed May 2 11:13:26 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Tue Dec 19 11:37:33 MST 2000","Wed May 2 11:13:26 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 20 to 306 (E-value = 6.7e-06) place PG0645 in the CorA family which is described as CorA-like Mg2+ transporter protein (PF01544)","Wed May 2 11:13:26 MDT 2001","34540508","","","","","","1","","","PG0715" "PG0646","769721","770107","387","TTGCGCCGCACCTCCTCCGTCTATCGGGTAGCACAGCAATGCCGTCAGTTAATCTTTCTACGGCTTGACGGAGGGAATGGGTCTTCCATTGACTATGATTTGATGAAATTAAAATCCGGCCAACCAATCGGTAATGCCGAAAAAATCAGCTCCACAAAGGTAAGATTATCACGCAAACGAAAAAGATGCTTTGCATTCAGAGACCATTGTTTTTGCTCTGAAGCTATCGGCAAATGTACTCATCCTGCAAAAAAGAAGAGGGCGACCCAAGAATATTTGGATCGCCCTCTGTTCTTTATGCTAACTTCATTCAGAGGGCTGTCGGCTCCTCCTGAAAAAAGTGTTGTCAGATCATATAACTTTATTTTTTGTCATCCAGGCTCGCAC","11.00","16.66","14761","LRRTSSVYRVAQQCRQLIFLRLDGGNGSSIDYDLMKLKSGQPIGNAEKISSTKVRLSRKRKRCFAFRDHCFCSEAIGKCTHPAKKKRATQEYLDRPLFFMLTSFRGLSAPPEKSVVRSYNFIFCHPGSH","769721 770107 [Delay by 375 845 342 0]","NO TIGR ID corresponds to this gene.","hypothetical protein","Periplasm, Cytoplasm","No significant hits.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Dec 19 11:51:45 MST 2000","Tue Dec 19 11:51:45 MST 2000","Tue Dec 19 11:51:45 MST 2000","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Tue Dec 19 11:51:45 MST 2000","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG0647","771185","770085","1101","ATGAAAGTATTCAAGTTTTTAGCATCGATGGTGCTGTTTGCAGGCTTATTTGCTGCATGCAACAAGGAAGACAACGATCTCATCAATTCGACTTCGGATGAAGCGGCAACTTTGGCTACGATGTATCCCAATGCTCAGAATGTAAGATGGGAGCAAGAAGGTGAATTCCGTGTGGCAGAATTCATGAACGAAGGCGTTAAGTCTGAAGCATGGTTCTTGCGAAGCATCTGGCAATACACGGAGATAGACATTCCCTACAGCGCCCTGCCTAAAGCAGTCCGAGCTGCTTTTGAGGCAAGTGAATATGCCAAGTGGAAAATAGAAGACATAGATAAGGTAGAACGTAACGGTACCGAAATATTCTATGTCATAGAAGTAGAAAAGGGAGACCAGGAAGTCGACTTGTTCTACATGCCCAATGGCAAGCTGATCAAAACCGTGAAAAAACCTCACAACGGATCAGCAGGTCAATATGCCAATCCGGTGATTCCGGCAGGAGTAATGAATACCATCAAGGCTTACATCGCTTCCAACTATCCTAATGCAACCATTCTGGAGTACGAGATCGAAGATGGCTACATAGAGGTGGACATTTTGGATGGTACGGTACATCGAGTTCTTATTTTCACACTCCAAGGCGAGTGGGTAAATAGTCATGTGGATGATGGAGATGACGATTATGACTACGATGATGATGCATACGAAAACAACATTCCGGCCAACATCAAGGCTCTGATCATCAGCTATGTCAATCAGAATTACCCGGGAGCTGTCATTCACAGTATCGAGCGTAACTCCAATGGTACTTATGACGTAGAAATTTACTACAACAATAGGGAGTACGACTTGCTGTTCGATGCACAGGGCAACCTCATCAGCGGAAACGTAGACGATCAGGATGATGACGACAACATTCCTGCTCACATCAAGGCTAAGATCATCAATTACGTCAACCGGAACTACCCCGGTGCATTTATCAAGGACATCGAAAGAAAGTCCAACGGCACATACAAGGCGGAAATCGTGTACAACAACAAGGAGTATGATTTGCTGTTCGATGCACAGGGCAATTTCATCAGTGCGAGCCTGGATGACAAAAAA","4.30","-28.80","41736","MKVFKFLASMVLFAGLFAACNKEDNDLINSTSDEAATLATMYPNAQNVRWEQEGEFRVAEFMNEGVKSEAWFLRSIWQYTEIDIPYSALPKAVRAAFEASEYAKWKIEDIDKVERNGTEIFYVIEVEKGDQEVDLFYMPNGKLIKTVKKPHNGSAGQYANPVIPAGVMNTIKAYIASNYPNATILEYEIEDGYIEVDILDGTVHRVLIFTLQGEWVNSHVDDGDDDYDYDDDAYENNIPANIKALIISYVNQNYPGAVIHSIERNSNGTYDVEIYYNNREYDLLFDAQGNLISGNVDDQDDDDNIPAHIKAKIINYVNRNYPGAFIKDIERKSNGTYKAEIVYNNKEYDLLFDAQGNFISASLDDKK","771230 770085","TIGR ID: PG0717. Reported by Chen et al., 2004, to be highly divergent in ATCC 33277.","conserved hypothetical protein","Cytoplasm","No significant hits.","
noIPR
unintegrated
unintegrated
PS51257\"[1-20]TPROKAR_LIPOPROTEIN
SSF53901\"[65-176]TSSF53901


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 13:15:44 MDT 2001","","Thu Jun 14 13:15:44 MDT 2001","Thu Jun 14 13:15:44 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:15:44 MDT 2001","Thu Jun 14 13:15:44 MDT 2001","","Tue Feb 22 13:58:41 2005","Fri Sep 10 17:34:28 2004","Tue Dec 19 13:44:27 MST 2000","Tue Dec 19 13:44:27 MST 2000","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Tue Dec 19 13:44:27 MST 2000","Thu Jun 14 13:15:44 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Jun 14 13:15:44 MDT 2001","34540509","","Chen T, Hosogi Y, Nishikawa K, Abbey K, Fleischmann RD, Walling J, Duncan MJ.Comparative whole-genome analysis of virulent and avirulent strains of Porphyromonas gingivalis.J Bacteriol. 2004 Aug;186(16):5473-9.PMID: 15292149","","Tue Feb 22 13:58:41 2005","","1","","","PG0717" "PG0648","771664","771230","435","ATGAAAAGACTGAAAATTTTTCTCTTGATAATTGTACTGGCCGGGATAAAGGGATGGGCGGCCGGCGATCGTATCATCCCCCTCAATCGCATCCCCCAAAAGGCTCAGGCAGTCGTGGCAAAACACTTTGCAGGTGCTAAGGTATCATACGTAAAGATGGACGACGACTTGTTCAGCAAGACCTATGATGTTGTCTTTACCAATGGCAACAAAATCGAATTCGACAAAAAAGGAAATTGGAAAGAAATAGACTGCAAGTACTCGCGCGTACCCAGCGACTTGGTCCCTGCCCCGATATTGCGTCACATATCATCTCAGTATCCCGACCTCTATATCGTTCAAATCGATCGGGATAGTAGAGACTATGAAGTGGAACTGAACAACGGCTTGGAACTCGTATTCTCTCTCAAAGGAGTTTTCAAGCGGTTTCATGAT","10.10","5.66","16627","MKRLKIFLLIIVLAGIKGWAAGDRIIPLNRIPQKAQAVVAKHFAGAKVSYVKMDDDLFSKTYDVVFTNGNKIEFDKKGNWKEIDCKYSRVPSDLVPAPILRHISSQYPDLYIVQIDRDSRDYEVELNNGLELVFSLKGVFKRFHD","771703 771230 [Delay by 285 850 199 0]","TIGR ID: PG0718","hypothetical protein","Cytoplasm","Gapped BLAST shows weak similarity to two probable periplasmic proteins in Campylobacter jejuni, (emb|CAB73614 with E value of 2e-12) and (emb|CAB73260 with E value 5e-06).","
noIPR
unintegrated
unintegrated
signalp\"[1-22]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 13:16:21 MDT 2001","","Thu Jun 14 13:16:41 MDT 2001","Thu Jun 14 13:16:41 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:16:41 MDT 2001","Thu Jun 14 13:16:41 MDT 2001","","","Tue Dec 19 13:54:42 MST 2000","Thu Jun 14 16:34:36 MDT 2001","Tue Dec 19 13:54:42 MST 2000","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Tue Dec 19 13:54:42 MST 2000","Thu Jun 14 13:16:21 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Jun 14 13:16:21 MDT 2001","34540510","","","","","","1","","","PG0718" "PG0649","773070","771790","1281","TTGAAACTATCCTATCGAATAGTACTGCGTTTGTCTGCTGTCTTCCTCGTGGTATTTACCGCCTGGGTGATAGCTTTCTATTATGTAATCGTCGAAGAAATAAACGACGAGACGAACGATTCGTTGGAGAACTACTCCGAACATGTCATCCGCAATATCCTCTCCGACAATCCTCTTCCACCGGCTGAAAACGACCTTAACAACACTTACTCCATTCGGGAGATTACCCCACAGGAGGCTATGCGTTTCGCTCACGATATTTACTACGATGAGATGGTGTACGTGAAGGCTCGTCGCGAAATGGAGCCCTGCCGGACGATGCATACGGTATTCGGCGACGGCAATGGCAGATACTATGAGCTCAAAGTTTCCATGCCGACCATCGAAAAGAGAGATTTGCGCGAAACGCTGTTAGAGTTTATCATTTATCTCTATATCCTGCTTCTGATCGTTACCATCGGTGTCACCACATGGATCATATCGCGTAGTTTCCGGCCACTGTATCGACTGATCGGCTGGATAGATCGCTTCCGCGTAAACGAACCTGTACAAGAGTTGGTAATGGCTAAAACGGATGTGACGGAATTCCGCAAGCTCAGTGAGGCCATGCTGCGTACTGCTCACCATAACGTGGAGGTTTTCGAGCAGCAGAAAGAATTTATCTCGCATGCCTCACACGAACTGCAAACACCTCTGGCCATAAGCCGCAATAAACTGGAAATGCTACTGCAAGATCCCTCTTTGAATGAACAGCAGCTCGAACAGATTTATAAGGCTATACAGTCCATCAACCATATTGTACAGCTCAATAAAACCCTCCTCCTCTATAGCAAAATCGAAAACCATCAATTCCCTGAGGAGGAAAGCATAGATGTGAATGAGCTATTGCATAATTTGGCGGAGGAGTATGAAGCGATTTTCGCCAATCGACGTATTCGCATTGTATGGAGCAGAAGTGAACCAATGGTTCTATCAATGAACCCGACTTTGGCCAAAGTCTTGCTAAGCAACCTGCTTAAGAACGCATACTTGCACAATCTTGAAAGAGATGGAGAGATCCATATCGATCTTACCTCTATGCATTGCAGCATAGCGAATACGGGGGTGAAGAACGCTTTGGACGAGACCTTGATATTCGAACGTTTCTATCACGATATGAAACAGGCTCATTCTTCCGGCTTGGGGCTTCCCATTGCACGCTCTATATGCCAGCTGTACGGACTCCGACTGACTTATCGCTTCGAGAATGGGAAACACACTTTTTCCATCGGCAAGGAAGCA","6.10","-8.24","49946","LKLSYRIVLRLSAVFLVVFTAWVIAFYYVIVEEINDETNDSLENYSEHVIRNILSDNPLPPAENDLNNTYSIREITPQEAMRFAHDIYYDEMVYVKARREMEPCRTMHTVFGDGNGRYYELKVSMPTIEKRDLRETLLEFIIYLYILLLIVTIGVTTWIISRSFRPLYRLIGWIDRFRVNEPVQELVMAKTDVTEFRKLSEAMLRTAHHNVEVFEQQKEFISHASHELQTPLAISRNKLEMLLQDPSLNEQQLEQIYKAIQSINHIVQLNKTLLLYSKIENHQFPEEESIDVNELLHNLAEEYEAIFANRRIRIVWSRSEPMVLSMNPTLAKVLLSNLLKNAYLHNLERDGEIHIDLTSMHCSIANTGVKNALDETLIFERFYHDMKQAHSSGLGLPIARSICQLYGLRLTYRFENGKHTFSIGKEA","773070 771790","TIGR ID: PG0719","probable sensor histidine kinase (histidine kinase sensor protein)","Inner membrane, Cytoplasm","Gapped BLAST finds numerous hits to the carboxyl terminal 200+ residues, including sensor protein in Xylella fastidiosa (AAF85332), a sensory protein kinase in Streptomyces hygroscopicus (emb|CAA60456) and a putative histidine protein kinase in Lactococcus lactis (AAF79919).This sequence is similar to BT0927.","
InterPro
IPR003594
Domain
ATP-binding region, ATPase-like
G3DSA:3.30.565.10\"[287-420]Tno description
PF02518\"[326-413]THATPase_c
SM00387\"[326-427]THATPase_c
InterPro
IPR003661
Domain
Histidine kinase A, N-terminal
PF00512\"[216-282]THisKA
SM00388\"[216-282]THisKA
InterPro
IPR005467
Domain
Histidine kinase
PS50109\"[223-427]THIS_KIN
noIPR
unintegrated
unintegrated
PTHR23283\"[6-29]T\"[148-413]TSENSOR HISTIDINE KINASE-RELATED
PTHR23283:SF23\"[6-29]T\"[148-413]TSENSORY TRANSDUCTION HISTIDINE KINASE (BACTERIAL SENSOR PROTEIN)
signalp\"[1-25]?signal-peptide
tmhmm\"[9-31]?\"[141-161]?transmembrane_regions


","BeTs to 13 clades of COG0642COG name: Sensory transduction histidine kinasesFunctional Class: TThe phylogenetic pattern of COG0642 is AMT-YQVCEBRHUJ--O-inXNumber of proteins in this genome belonging to this COG is 6","No significant hit to the Blocks database.","Residues 205-412 are 25% similar to a (YBDK PROTEIN) protein domain (PD131715) which is seen in O31433_BACSU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed May 2 11:24:11 MDT 2001","Thu Dec 4 10:28:45 2003","Tue Dec 19 14:08:42 MST 2000","","Tue Apr 3 13:32:40 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 199-416 are 24% similar to the ~200 residues (412-641) of a large multidomain protein, PG1571, a predicted adenylate cyclase.","Tue Apr 3 13:32:40 MDT 2001","Tue Apr 3 13:32:40 MDT 2001","-46% similar to PDB:2C2A STRUCTURE OF THE ENTIRE CYTOPLASMIC PORTION OF A SENSOR HISTIDINE KINASE PROTEIN (E_value = 8.9E_10);","","","Residues 216 to 282 (E-value = 5.9e-12) place PG0649 in the HisKA family which is described as His Kinase A (phosphoacceptor) domain (PF00512)","Tue Apr 3 13:32:40 MDT 2001","34540511","","","","","","1","","","PG0719" "PG0650","773756","773070","687","ATGAAAATCCTCATTATCGAAGATGAACCGGATCTGAGGGAAACCATCCAAAAGTTTCTCCTCGGGGAAAGGTACATCGTAGAGACAGCTGCAACGATGAACGAAGGCTTGGACAAGGTGCTAGTGTACGACTACGACTGTATCCTGCTGGACATTATGCTGCCCGACGGCAATGGGCTTACCCTTTTGAAGGAACTGAAAAAGAGAGGAAAAACGGAGAACCTGATCATCATCTCTGCCAAAGACGCGATCGAGGACAAGGTGCAGGGGATCGAACTGGGTGCGGATGATTATCTGACAAAGCCATTCCATCTCCTGGAATTGAACGTCAGAATCAAAGGACTTATCCGACGCAAAACGGCTCATGGAGCCATGGAAATCAAACTCGGAAATGTGTCTTTGGTACCGGACAGGTTCGAAGTTGCGGTCAAGGGGCATCCCTTGGAGTTGAAGCGAAAAGAATACGATATCCTGTATCACCTGATGACCCGACCGAACCGATTGGTGGACAAGGCCGCTCTGGCAGAAGCCGTGTGGGGAGACTATATAGACCAAGCGGACAATTATGACTTTGTCTATGCTCAAATCAAAAATCTGCGCAAGCAGATGAACGATGCAGGGGCGACGATCGAGATCAAATCGGTATATGGATTCGGTTATAAACTCATAGAAAGAGAAGAAGATACT","5.20","-6.07","26185","MKILIIEDEPDLRETIQKFLLGERYIVETAATMNEGLDKVLVYDYDCILLDIMLPDGNGLTLLKELKKRGKTENLIIISAKDAIEDKVQGIELGADDYLTKPFHLLELNVRIKGLIRRKTAHGAMEIKLGNVSLVPDRFEVAVKGHPLELKRKEYDILYHLMTRPNRLVDKAALAEAVWGDYIDQADNYDFVYAQIKNLRKQMNDAGATIEIKSVYGFGYKLIEREEDT","773756 773070","TIGR ID: PG0720","response regulator","Cytoplasm","Gapped BLAST shows hundreds of hits to response regulator proteins including in Synechococcus PCC7942 (gb|AAB38789), Synechocystis sp. (dbj|BAA18735) and a two-component response regulator in Bacillus halodurans (dbj|BAB05299).","
InterPro
IPR001789
Domain
Response regulator receiver
PD000039\"[1-117]TResponse_reg
PF00072\"[1-113]TResponse_reg
SM00448\"[1-112]TREC
PS50110\"[2-116]TRESPONSE_REGULATORY
InterPro
IPR001867
Domain
Transcriptional regulatory protein, C-terminal
PD000329\"[127-224]TTrans_reg_C
PF00486\"[145-222]TTrans_reg_C
InterPro
IPR005479
Domain
Carbamoyl-phosphate synthase L chain, ATP-binding
PS00867\"[105-112]?CPSASE_2
InterPro
IPR011006
Domain
CheY-like
SSF52172\"[1-187]TCheY_like
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.2300\"[1-152]TG3DSA:3.40.50.2300
PTHR23283\"[2-120]TPTHR23283
PTHR23283:SF21\"[2-120]TPTHR23283:SF21


","BeTs to 8 clades of COG0745COG name: Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domainFunctional Class: T,KThe phylogenetic pattern of COG0745 is -----QVCEBRHUJ----inXNumber of proteins in this genome belonging to this COG is 3","***** PF00072 (Response regulator receiver domain) with a combined E-value of 4.4e-13. PF00072A 46-59 PF00072B 94-103","Residues 1-117 are 38% similar to a (PROTEIN SENSORY TRANSDUCTION PHOSPHORYLATION REGULATOR) protein domain (PD000039) which is seen in P72561_SYNP7.Residues 127-222 are 36% similar to a (PROTEIN TRANSDUCTION SENSORY TRANSCRIPTION REGULATION) protein domain (PD000329) which is seen in Y4XI_RHISN.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Dec 19 14:26:03 MST 2000","Tue Dec 19 14:26:03 MST 2000","Tue Dec 19 14:26:03 MST 2000","Tue Apr 3 13:39:25 MDT 2001","Tue Apr 3 13:39:25 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 2-223 are 29% similar to PG0970, a probable inner membrane signal-transducing protein. The firest 100+ residues show 34% similarity to the carboxyl end of a large, multidomain gene PG1571.","Tue Apr 3 13:39:25 MDT 2001","Tue Apr 3 13:39:25 MDT 2001","-57% similar to PDB:1KGS Crystal Structure at 1.50 A of an OmpR/PhoB Homolog from Thermotoga maritima (E_value = 3.0E_31);-56% similar to PDB:1YS6 Crystal structure of the response regulatory protein PrrA from Mycobacterium Tuberculosis (E_value = 6.1E_24);-56% similar to PDB:1YS7 Crystal structure of the response regulator protein prrA comlexed with Mg2+ (E_value = 6.1E_24);-48% similar to PDB:2GWR Crystal structure of the response regulator protein mtrA from Mycobacterium Tuberculosis (E_value = 3.7E_21);-64% similar to PDB:1NXO MicArec pH7.0 (E_value = 1.6E_19);","","","Residues 1 to 120 (E-value = 6.7e-38) place PG0650 in the Response_reg family which is described as Response regulator receiver domain (PF00072)Residues 145 to 222 (E-value = 1.3e-14) place PG0650 in the Trans_reg_C family which is described as Transcriptional regulatory protein, C terminal (PF00486)","Tue Apr 3 13:39:25 MDT 2001","34540512","","","","","","1","","","PG0720" "PG0651","773988","774593","606","ATGACAGTAAAGCGCGCAGTGCGAATAGCACTTCTCACGCTGATAGGCATTCTTTTTTCCTCACCTTCTCTTGTTCGGGCGCAAAGTCTTTTCAGCACCGAACATGTCTTGCAACTATACAACAAGATACTCTATGGAGAGTCGGCGGCGGATACCGTCGCAGAGAAAACGGCAGGTGAGTCGGCATTTCCTTTTATAGACAAACTCATCAATCTCGGCCGCACTTTCCTCGGCAAACCATATCGCTATCGCGGTCCTTCCCCATGGCCGATGGACTGCTCGGGCTATGTGTCTTACCTCTACTCCAAATTCGACATCAAACTCCCACGTGGTGCGGCAGCACAGAGCCAATATACGAATCCTATCGAGCGCGAGGATGTTCGTCCGGGCGACCTCCTTTTTTTCAAAGGCCGCAATGCACGCAGCAACCGTATCGGGCATGTAGCTTTGGTCGTATCTGTCGATGAAGATGATATTACCATGATGCACAGCCGCAATTCGCGAGGGATCGTGATCGAAAAACTCAATCGCAGTGCATACTTCTCCCGTCGCTTGGTGAGCTATGGCAGGGTACCCGGAGCCAAGAGAGTGATCCCACGAAAAAGT","10.90","14.67","22690","MTVKRAVRIALLTLIGILFSSPSLVRAQSLFSTEHVLQLYNKILYGESAADTVAEKTAGESAFPFIDKLINLGRTFLGKPYRYRGPSPWPMDCSGYVSYLYSKFDIKLPRGAAAQSQYTNPIEREDVRPGDLLFFKGRNARSNRIGHVALVVSVDEDDITMMHSRNSRGIVIEKLNRSAYFSRRLVSYGRVPGAKRVIPRKS","773988 774593","TIGR ID: PG0721","conserved hypothetical protein","Outer membrane, Periplasm, Cytoplasm","Gapped BLAST shows weak similarity to numerous hydrolase proteins including a murein hydrolase homolog in Bacillus subtilis (CAB15603), polysugar degrading enzyme (alpha-amylase) in Bacillus halodurans (dbj|BAB06726) and an extracellular protein in Listeria welshimeri (AAA25287).","
InterPro
IPR000064
Domain
NLP/P60
PF00877\"[78-190]TNLPC_P60
noIPR
unintegrated
unintegrated
PTHR21666\"[77-186]TPTHR21666
PTHR21666:SF1\"[77-186]TPTHR21666:SF1


","BeTs to 5 clades of COG0791COG name: Cell wall-associated hydrolases (invasion-associated proteins)Functional Class: MThe phylogenetic pattern of COG0791 is -------cEBRHuj----in-Number of proteins in this genome belonging to this COG is 2","***** PF00877 (NLP/P60 family) with a combined E-value of 3.8e-07. PF00877A 83-97 PF00877B 119-135","Residues 69-184 are 56% similar to a (PROTEIN PRECURSOR SIGNAL P60 INVASION-ASSOCIATED) protein domain (PD001396) which is seen in Q51835_PORGI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Dec 19 15:40:35 MST 2000","Tue Dec 19 15:40:35 MST 2000","Tue Dec 19 15:07:30 MST 2000","Tue Apr 3 13:41:10 MDT 2001","Tue Apr 3 13:41:10 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 91-192 are 53% similar to the first one hundred residues of PG0669, a conserved hypothetical protein (lipoprotein).","Tue Apr 3 13:41:10 MDT 2001","Tue Apr 3 13:41:10 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 78 to 190 (E-value = 2.6e-27) place PG0651 in the NLPC_P60 family which is described as NlpC/P60 family (PF00877)","Tue Apr 3 13:41:10 MDT 2001","34540513","","","","","","1","","","PG0721" "PG0651.1","774643","774906","264","GTGCAGCAATCACCGGATTTGTGCACAGCCTTTTTCGCATACAGCCCGGATGGATTTGGAAGGAGAAAGTATTGTGAGGTGGCCAAAGAGAGAGAAAAAAAACGATACATATTTCGGAACTTATTTTTCCGGCCGGGAAAAGTTTCCCCGACAGCTAACAAAAATAAATTTTCCGGCCGGAAAATCTCTATCCAAAGCCTTCGGATATATAAACGAAGCCTTTGGATACATATCCGAAAGCTTCGTTTATATATCCGAAACCTT","","","10585","VQQSPDLCTAFFAYSPDGFGRRKYCEVAKEREKKRYIFRNLFFRPGKVSPTANKNKFSGRKISIQSLRIYKRSLWIHIRKLRLYIRNL","","NO TIGR ID corresponds to this gene.","hypothetical protein","Periplasm, Cytoplasm","No hits.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Tue Dec 19 15:48:53 MST 2000","","","","Tue Dec 19 15:48:53 MST 2000","","","","Tue Dec 19 15:48:53 MST 2000","Tue Dec 19 15:48:53 MST 2000","Tue Dec 19 15:48:53 MST 2000","","","yes","Fri Feb 20 15:41:32 MST 1998","The last half of PG0651.1 is paralogous (80% identical) to the carboxyl terminus of PG0596.","Tue Dec 19 15:48:53 MST 2000","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG0651.2","775241","774936","306","TTGCGTTTTATTGTGGAACGAAAATACGAAAGAAACTCGTTATCCCCTCTTTTAACGAGAGTTGAATCTATAGGAGAACAAGGTTTGTCGGATAAAAGTGTACCGCCCCTGAATGAAAGCATCGATGCAATCGCTATCGGTGCGATAGGCAAGACTCAATATGCTATTGCTTCTGGCATACGAATATCTCACGTAAATCCCTTCATTACAGTACGTTTTGAAGAATATTCATTTTTTTACCGGACAGCAATAAAAAGAAATGATCGTTCTCAGCCGGAAAAAGTTTTTTCTGCAGTACAGAAAAGT","","","11531","LRFIVERKYERNSLSPLLTRVESIGEQGLSDKSVPPLNESIDAIAIGAIGKTQYAIASGIRISHVNPFITVRFEEYSFFYRTAIKRNDRSQPEKVFSAVQKS","","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No significant hits.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Tue Dec 19 15:51:08 MST 2000","","","","Tue Dec 19 15:51:08 MST 2000","","","","Tue Dec 19 15:51:08 MST 2000","Tue Dec 19 15:51:08 MST 2000","Tue Dec 19 15:51:08 MST 2000","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Tue Dec 19 15:51:08 MST 2000","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG0652","775370","777313","1944","ATGACCCTGTCGCGGGTGAGCGAAATGGCCTTGTCTCCCGACGGTAAAACGGCTGTTTATGCCGTCAGCTTTCCCGATGTCAAAACGAACAAGGCTACCCGCGAGCTATTTACCGTCAATCTCGATGGTTCGGGGCGTAAGCAGATAACCGACACCGAGTCCAACGAATACGCTCCTGCCTGGATGGCCGACGGTAAGCGCATTGCTTTTATGAGCAACGAAGGCGGCAGCATGCAGCTTTGGGTCATGAACGCCGATGGTACGGAACGCCGCCAACTCAGCAATATCGAAGGTGGTATTACAGGTTTTCTTTTCTCCCCGGACGAGAAACAGGTGCTTTTCACCAAAGACATCAAATTCGGCAAACGCACCAAAGACATTTATCCCGATTTGGACAAAGCTACCGGACGCATCATCACCGATCTGATGTATAAGCATTGGGACGAGTGGGTGGAGACCATACCGCATCCCTTCATCGCGAACGCGACGGATGGAATGATCACCACCGGCAAAGACATCATGGAGGGCGAACCCTACGAGGCTCCGATGAAACCGTGGTCGGGTATCGAAGATTTCAGTTGGAGCCCTGACGGACAGAACATAGCATACGCCAGCCGCAAGAAAACGGGCATGGCATATTCTCTGTCTACCAACTCGGACATATATATCTATAATCTGGCTTCCGGCCGGACGCACAACATTTCCGAAGGGATGATGGGCTACGACACCTATCCGAAGTTCAGCCCCGACGGCAAGAGCATTGCATGGATCAGCATGGAGCGCGATGGATATGAAAGCGATCTGAAGCGTCTTTTCGTGGCGGATCTTGCCACAGGAAAACGCACCCATGTAAACCCCACATTCGATTACAATGTGGATATGATCCAATGGGCACCGGACAGTAAGGGTATCTATTTCCTTGCCTGTAAGGAGGCAGAGACCAATCTGTGGGAGATCACGCTGAAAACGGGTAAGATCCGTCAGATCACGCAAGGACAGCACGACTATGCCGACTTCTCCGTGCGCAACGACGTTATGCTGGCCAAACGCCATTCTTTCGAACTCCCCGACGATCTCTATCGTGTGAATCTGAAGAATGGAGCGGCACAGGCTGTCACGGCAGAAAACAAAGTCATCCTCGATCGTCTCACTCCCATCACCTGCGAAAAACGCTGGATGAAGACTACCGATGGAGGCAATATGCTTACATGGGTAGTACTGCCACCCAACTTCGATAAAAACAAGAAATATCCGGCTATACTCTATTGTCAGGGAGGTCCGCAGAATACCGTAAGCCAGTTCTGGTCGTTCCGCTGGAATCTCCGACTGATGGCCGAGCAGGGCTATATCGTCATTGCCCCCAACCGCCATGGCGTACCCGGATTCGGGCAGAAATGGAACGAACAGATCAGTGGCGACTATGGTGGCCAGAATATGCGTGACTATCTGACTGCCGTAGACGAAATGAAGAAAGAACCCTATGTCGATGGCGATCGCATCGGAGCGGTGGGTGCAAGCTACGGTGGCTTCTCCGTCTATTGGTTGGCAGGCCATCACGATAAGCGATTTGCCGCTTTTATCGCTCATGCCGGTATCTTCAATCTGGAGATGCAGTACGCCACGACGGAAGAGATGTGGTTTGCTAATTGGGATATAGGCGGTCCTTTCTGGGAGAAGGATAATGTAGTGGCTCAGCGTACCTATGCAACTTCGCCACACAAGTTCGTGCAGAATTGGGATACACCTATCCTCATGATTCATGGCGAACTGGACTTCCGCATTCTCGCTTCACAGGCTATGGCTGCTTTCGATGCAGCACAGCTTCGTGGCGTTCCGAGCGAGATGTTGATCTATCCGGATGAAAACCACTGGGTACTCCAACCGCAGAATGCATTGCTATTCCATCGTACATTCTTCGGCTGGTTGGATCGTTGGCTGAAGAAG","6.10","-7.72","73737","MTLSRVSEMALSPDGKTAVYAVSFPDVKTNKATRELFTVNLDGSGRKQITDTESNEYAPAWMADGKRIAFMSNEGGSMQLWVMNADGTERRQLSNIEGGITGFLFSPDEKQVLFTKDIKFGKRTKDIYPDLDKATGRIITDLMYKHWDEWVETIPHPFIANATDGMITTGKDIMEGEPYEAPMKPWSGIEDFSWSPDGQNIAYASRKKTGMAYSLSTNSDIYIYNLASGRTHNISEGMMGYDTYPKFSPDGKSIAWISMERDGYESDLKRLFVADLATGKRTHVNPTFDYNVDMIQWAPDSKGIYFLACKEAETNLWEITLKTGKIRQITQGQHDYADFSVRNDVMLAKRHSFELPDDLYRVNLKNGAAQAVTAENKVILDRLTPITCEKRWMKTTDGGNMLTWVVLPPNFDKNKKYPAILYCQGGPQNTVSQFWSFRWNLRLMAEQGYIVIAPNRHGVPGFGQKWNEQISGDYGGQNMRDYLTAVDEMKKEPYVDGDRIGAVGASYGGFSVYWLAGHHDKRFAAFIAHAGIFNLEMQYATTEEMWFANWDIGGPFWEKDNVVAQRTYATSPHKFVQNWDTPILMIHGELDFRILASQAMAAFDAAQLRGVPSEMLIYPDENHWVLQPQNALLFHRTFFGWLDRWLKK","dipeptidyl peptidase IV","TIGR ID: PG0724","dipeptidyl peptidase IV","Periplasm, Cytoplasm, Extracellular","Gapped BLAST shows numerous significant hits to prokaryotic and eukaryotic peptidases including alanyl dipeptidyl peptidase in Xylella fastidiosa (AAF85059), probable acylaminoacyl-peptidase in Aspergillus fumigatus (gb|AAB67282) and AAD52012 in Trichophyton rubrum.This sequence is similar to BT0587.","
InterPro
IPR001375
Domain
Peptidase S9, prolyl oligopeptidase active site region
PF00326\"[435-648]TPeptidase_S9
InterPro
IPR011659
Repeat
WD40-like Beta Propeller
PF07676\"[47-82]T\"[91-129]T\"[181-223]T\"[231-273]TPD40
noIPR
unintegrated
unintegrated
G3DSA:2.120.10.30\"[16-335]TG3DSA:2.120.10.30
G3DSA:3.40.50.1820\"[386-648]TG3DSA:3.40.50.1820
PTHR11731\"[3-646]TPTHR11731
PTHR11731:SF7\"[3-646]TPTHR11731:SF7
SSF53474\"[386-647]TSSF53474
SSF82171\"[2-386]TSSF82171


","BeTs to 4 clades of COG1506COG name: Dipeptidyl aminopeptidases/acylaminoacyl-peptidasesFunctional Class: EThe phylogenetic pattern of COG1506 is ---KY--c-b-----------Number of proteins in this genome belonging to this COG is 5","***** PF00930 (Dipeptidyl peptidase IV (DPP IV) N-terminal region) with a combined E-value of 1.2e-10. PF00930A 103-124 PF00930B 215-265 PF00930G 408-445 PF00930H 445-487 PF00930J 582-602***** IPB002471 (Prolyl endopeptidase family serine active site) with a combined E-value of 7.8e-07. IPB002471A 65-77 IPB002471B 481-511","Residues 35-131 are 36% similar to a (POLYPROTEIN APICAL GUT MEMBRANE C31C9.1 PROTEIN) protein domain (PD043995) which is seen in Q25021_HAECO.Residues 504-623 are 37% similar to a (DIPEPTIDYL HYDROLASE PROTEIN IV PEPTIDASE PROTEASE) protein domain (PD003048) which is seen in O13479_ASPFU.Residues 304-501 are 30% similar to a (DIPEPTIDYL HYDROLASE IV PROTEIN PEPTIDASE PROTEASE) protein domain (PD001060) which is seen in O58593_PYRHO.Residues 1-378 are 21% similar to a (SECRETED DIPEPTIDYL PEPTIDASE PRECURSOR) protein domain (PD141829) which is seen in O13479_ASPFU.Residues 178-344 are 25% similar to a (PROTEIN TOLB PRECURSOR COLICIN) protein domain (PD025102) which is seen in TOLB_ECOLI.","","Thu Jun 14 13:17:26 MDT 2001","","Thu Jun 14 13:17:26 MDT 2001","Thu Jun 14 13:17:26 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:17:26 MDT 2001","Thu Jun 14 13:17:26 MDT 2001","Tue Dec 19 16:35:24 MST 2000","","Tue Dec 19 16:35:24 MST 2000","Tue Dec 2 16:57:44 2003","Tue Dec 19 16:35:24 MST 2000","Tue Dec 2 16:57:44 2003","Tue Dec 2 16:57:44 2003","yes","Fri Feb 20 15:41:32 MST 1998","Residues 10-647 are 23% similar to PG1528, probable acylaminoacyl peptidase.Residues 167-634 are 23% similar to PG1196 dipeptidyl peptidase IV. Residues 5-648 are 20% similar to PG0897 probable acylamino-acid-releasing enzyme (dipeptidyl aminopeptidase).Residues 298-623 are 23% similar to PG0459, dipeptidyl peptidase IV (DPP IV) N-terminal region.","Tue Dec 2 16:57:44 2003","Tue Apr 3 13:46:15 MDT 2001","-38% similar to PDB:2D5L Crystal Structure of Prolyl Tripeptidyl Aminopeptidase from Porphyromonas gingivalis (E_value = 9.3E_17);-38% similar to PDB:2DCM The Crystal Structure of S603A Mutated Prolyl Tripeptidyl Aminopeptidase Complexed with Substrate (E_value = 2.1E_16);-41% similar to PDB:1Z68 Crystal Structure Of Human Fibroblast Activation Protein alpha (E_value = 8.1E_13);-41% similar to PDB:1ORV Crystal Structure of Porcine Dipeptidyl Peptidase IV (CD26) (E_value = 7.6E_11);-41% similar to PDB:1ORW Crystal Structure of Porcine Dipeptidyl Peptidase IV (CD26) in Complex with a Peptidomimetic Inhibitor (E_value = 7.6E_11);","","","Residues 39 to 434 (E-value = 4.9e-05) place PG0652 in the DPPIV_N family which is described as Dipeptidyl peptidase IV (DPP IV) N-terminal region (PF00930)","Tue Apr 3 13:46:15 MDT 2001","34540516","","","","","","1","","","PG0724" "PG0653","777401","778024","624","ATGATCAGGAACATCGTATTCGACCTCGGTGGAGTTCTCATTCACCTCAACCGAGAAGAATCCATCCGCCGATTCAAAGCCATAGGAGTAGCAGACATTGAAGAAATGCTCGACCCCTATCTGCAAAAAGGTCTCTTCCTCGACTTGGAGTCCGGGCGAAAGAGCGAAGAGGAATTCCGAACCGAGCTATCCCGATACATAGGAAAAGAATTGACCTATCAGCAGGTGTACGATGCTCTCCTTGGTTTTCTTGAGGAGATTTCGGCCGAAAAGTTCGATTATATCGACTCGCTACGCCCCGATTATCGACTCTTCCTCCTCTCCAACACCAATCCTTATGTCCTCGATTTGGCCATGAGTCCGCGTTTTCTTCCCTCAGGAAGGACGCTGGATAGTTTCTTTGATAAAGTCTATGCCAGTTGTCAGATGGGGAAATACAAACCCAATGAAGATATTTTCCTCGAAATGATAGCCGACAGCGGTATGAAGCCGGAGGAAACCCTCTTCATCGACGACGGACCGGCTAATGTGGCAACAGCCGAACGACTCGGTTTCCACACCTATTGCCCCGACAATGGGGAAAACTGGATCCCTGCCATTACTCGACTCCTTCGCGAACAGAAA","4.50","-11.60","24016","MIRNIVFDLGGVLIHLNREESIRRFKAIGVADIEEMLDPYLQKGLFLDLESGRKSEEEFRTELSRYIGKELTYQQVYDALLGFLEEISAEKFDYIDSLRPDYRLFLLSNTNPYVLDLAMSPRFLPSGRTLDSFFDKVYASCQMGKYKPNEDIFLEMIADSGMKPEETLFIDDGPANVATAERLGFHTYCPDNGENWIPAITRLLREQK","777401 778024","TIGR ID: PG0725","haloacid dehalogenase-like hydrolase","Cytoplasm","Gapped BLAST shows weak similarity to several conserved proteins including ones in Thermotoga maritima (gb|AAD35724), Vibrio cholerae (gb|AAF947960), E.coli (gb|AAD13447, gb|AAB03018) and a hydrolase in Deinococcus radiodurans (AAF10406).","
InterPro
IPR005833
Family
Haloacid dehydrogenase/epoxide hydrolase
PR00413\"[2-13]T\"[134-150]T\"[152-172]THADHALOGNASE
InterPro
IPR005834
Domain
Haloacid dehalogenase-like hydrolase
PF00702\"[2-193]THydrolase
InterPro
IPR006402
Domain
HAD-superfamily hydrolase, subfamily IA, variant 3
TIGR01509\"[4-190]THAD-SF-IA-v3
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.1000\"[93-192]TG3DSA:3.40.50.1000
PTHR12725\"[130-198]TPTHR12725
PTHR12725:SF3\"[130-198]TPTHR12725:SF3
SSF56784\"[3-203]TSSF56784


","BeTs to 7 clades of COG1011COG name: Predicted hydrolases of the HAD superfamilyFunctional Class: RThe phylogenetic pattern of COG1011 is -mtKY-V-EB---j--o----Number of proteins in this genome belonging to this COG is 3","***** PR00413 (Haloacid dehalogenase/epoxide hydrolase family signature) with a combined E-value of 2.2e-07. PR00413A 2-13 PR00413E 134-150 PR00413F 152-172","Residues 7-184 are 25% similar to a (HYDROLASE DEHALOGENASE ACID) protein domain (PD003038) which is seen in YIHX_ECOLI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Dec 19 17:21:59 MST 2000","Tue Dec 19 17:21:59 MST 2000","Tue Dec 19 17:14:29 MST 2000","Wed May 2 11:31:36 MDT 2001","Wed May 2 11:31:36 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Tue Dec 19 17:14:29 MST 2000","Wed May 2 11:31:36 MDT 2001","-100% similar to PDB:2I6X The structure of a predicted HAD-like family hydrolase from Porphyromonas gingivalis. (E_value = 2.1E_118);","","","Residues 2 to 193 (E-value = 4.2e-09) place PG0653 in the Hydrolase family which is described as haloacid dehalogenase-like hydrolase (PF00702)","Wed May 2 11:31:36 MDT 2001","34540517","","","","","","1","","","PG0725" "PG0654","778483","778097","387","ATGAAAAAAGCATTACTATGCTTCGCTTGCGGTGCACTTTGCTTAGCTACGATTACCGGGTGTGCCACTCTTTTCGGCAAACAGACGCATGCTGTGGAAATGGTTTCCAACCCACAGGGAGCAGAAGTTTACATCAATGGTGACAAGATGGGACAAACGCCCTTGCAACTCTCGCTCAAGGCTGACAAATCCTACACCGTGGAATTTCGTATTCCGGGTAAACAGCCCATCATACGTATAATCAACAACCGTGTGGAAGCCAAGTGGGTGGTATTGGATGTACTCGGTGGTCTTATTCCCGTGGCTATCGATGCTATTACAGGCAACTGGTACGGACTGGATCAGAATAAGCTGAACGTGGACTTCACGATGCAAGAGCCTACGAAA","8.20","2.03","14066","MKKALLCFACGALCLATITGCATLFGKQTHAVEMVSNPQGAEVYINGDKMGQTPLQLSLKADKSYTVEFRIPGKQPIIRIINNRVEAKWVVLDVLGGLIPVAIDAITGNWYGLDQNKLNVDFTMQEPTK","778513 778097","TIGR ID: PG0726","possible lipoprotein","Periplasm, Cytoplasm","This sequence corresponds to gi:34396831 in Genbank.Its nearest neighbor in the NR database is gi:23120767 from Desulfitobacterium hafniense DCB-2.","
InterPro
IPR013229
Domain
PEGA
PF08308\"[36-73]TPEGA
noIPR
unintegrated
unintegrated
PS51257\"[1-21]TPROKAR_LIPOPROTEIN


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 13:18:02 MDT 2001","","Thu Jun 14 13:18:02 MDT 2001","Thu Jun 14 13:18:02 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:18:02 MDT 2001","Thu Jun 14 13:18:02 MDT 2001","","","Thu Mar 3 13:57:47 2005","Thu Mar 3 13:57:47 2005","Tue Dec 19 17:25:38 MST 2000","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Tue Dec 19 17:25:38 MST 2000","Thu Jun 14 13:18:02 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Jun 14 13:18:02 MDT 2001","34540518","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Thu Mar 3 13:57:47 2005","","1","","","PG0726" "PG0655","779898","778735","1164","ATGACTATGAGTACAATACTATTTGACGACATCAGACCATACTGCGATCAGGAAGCACCGGCCGTAATCGAACGTCTGCTGAGTTCGGCCGAATATCGGTATGTGTTCGGCAAAATGATGCCGGACGTAAAGCCACAGGAGTTCGAACAAATGATGTTGCGCTGCAAATCCACCGGTGAATTCAAACACATCTTCGGCTATACAGCGGTTAAGGCAGTGAGTGAGAAGACGACATTCAGCCTCTCGTTAAGTGGCAGGAGTCGTATCCCTGACAATGGAGCCTACATTTTTATCTCGAACCACCGAGACATCGTATTGGACTCGGCTTTCCTCAACCTGCTGCTTGCTGAGATCGACTACAATATGCCACAGATAGCCATCGGAGACAACCTCCTTGTGAAGCCGTGGATAGAAGACTTCGTACGACTCAACGGGAGCTTTATCGTACGTCGCGGGATCAATATGCGCGAACTGATAGCACAGTCGCAGAGACTATCGGCATACATCCGGCATACGATTACCCAAACGAAAGATTCCATCTGGATAGCCCAACGCGAAGGACGGGCCAAAGATGCCGACGATCGCACGCAGAGCAGTGTGCTCAAGATGCTTGCCATGAGCGGTGAGGACGGAGGAATCAAGAGTCTGCTCAATCTCAACATCGTACCGCTCTCTTTGAGCTATGAGTATGACCCCTGCGATTACCTGAAAGCGCGCGAGATGCTCAGCAAGCAGCGCGACCCGTTATATAAGAAACCCGTCGGGGAGGATCTGCTGAATATGCAGACAGGTATTTTCGGCTACAAAGGACGTGTTCACTTTGCCATAGGTACACCCCTAAGAGAATTGGCCGAGAGCATCCCGGCAGATGCGCCGCATGCCCGGCAGTTCACAGAGGCAGGCAAACTGATCGATGCAGAAATCCATCGTCGCTACCGTCTCTATCCGGGCAATTATGTAGCATGGGATCTTCTGGACGGATGCGACCACGCCGGTTCGCATTATAGCAAGGAGGAAAAAGAGACCTTTGTAAACTATCTGTCCGCACAAATCGCCAAAGTGGAGATGCAGGATAAGGATGAAGAGGAATTGAAACGACTGATTCTGATCATGTATGCCAATCCGGCAAGGGCATATTATGCTGCTCAAGATCCGACGAATGTA","6.30","-3.23","44271","MTMSTILFDDIRPYCDQEAPAVIERLLSSAEYRYVFGKMMPDVKPQEFEQMMLRCKSTGEFKHIFGYTAVKAVSEKTTFSLSLSGRSRIPDNGAYIFISNHRDIVLDSAFLNLLLAEIDYNMPQIAIGDNLLVKPWIEDFVRLNGSFIVRRGINMRELIAQSQRLSAYIRHTITQTKDSIWIAQREGRAKDADDRTQSSVLKMLAMSGEDGGIKSLLNLNIVPLSLSYEYDPCDYLKAREMLSKQRDPLYKKPVGEDLLNMQTGIFGYKGRVHFAIGTPLRELAESIPADAPHARQFTEAGKLIDAEIHRRYRLYPGNYVAWDLLDGCDHAGSHYSKEEKETFVNYLSAQIAKVEMQDKDEEELKRLILIMYANPARAYYAAQDPTNV","779898 778735","TIGR ID: PG0728","conserved hypothetical protein","Cytoplasm","Gapped BLAST shows significant hits to hypothetical proteins found in Pseudomonas aeruginosa (gb|AAG08024) and Vibrio cholerae (gb|AAF96818).","
InterPro
IPR002123
Domain
Phospholipid/glycerol acyltransferase
PF01553\"[80-227]TAcyltransferase
SM00563\"[95-229]TPlsC


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Dec 19 17:30:42 MST 2000","Tue Dec 19 17:30:42 MST 2000","Tue Dec 19 17:30:42 MST 2000","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Tue Dec 19 17:30:42 MST 2000","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540520","","","","","","1","","","PG0728" "PG0656","780909","779920","990","ATGAAAAAACCAATTGTGGCTGTCATTGCAGGCGGTTATTCGGGCGAACATTCGGTTTCGCTCAAAAGTGCTGCCGGCATTCTGTCCTGGCTGGGAAGCGAGCCTTTCTCCACCTTTCTTGTTCTGATCGAACGTGATCGCTGGTCGGTAAGAGTATCGGAGCAGAGAGAGGTTCCACTGGATAAGAACGATTTCAGCTTTGATCTCGATGGCGAACGAATACGGTTTGACTATGCTTATATCACCATACATGGAACTCCGGGAGAGAACGGTCTGCTTCAGGGGTATCTCGACATGATCGGCATCCCATACAATACGGGTGACACGCTCGTCGAATCCCTGACTTTCAACAAATATGTGTGCAATCGTTTTCTCTCCGGCTTCGGTATCCGCATTGCCGATTCTATGCGACTGACCGGGCGAGATACTCAGCCCGATGTGGCGGATCTGATAGCACGTATGGGGCTTCCTCTTTTCGTGAAACCCAATGTGGGAGGTTCCAGCATCGCGACTACCAAGGTGGTGGAAGCTGCACAGCTCCTTCCGGCAATAGAACAAGCCTTCTCGGAAGGCGAAGAGGTAATGATAGAGCGTCTGATATGTGGTACCGAGGTTACCTGCGGGGCATTCCTCAGAAAAAAAGAAGTGGTCGCATTGCCTGTTACAGAAGTTGTCGCACATAATGAGTTTTTCGACTTCGATGCCAAATACAACGGAGCTGTAGAGGAAATCACACCGGCGAGAATCAGCGATGAAGCCACTCGATTGATACAGACCATGACTGCGCGCATATACGAGCTTCTCAACGCTCGGGGCATCATACGTGTGGACTATATCATCGAAGCGGATGGTATTCCCACGCTGCTGGAAGTGAACACGACACCGGGCATGACCCCTACGAGCTTTATCCCCCAGCAGGTTCGAGCAGCCGGAATGGATATGAAAGAGGTGCTTTGCACTATCATTCGGGATGGACTGAATGAGACCCAA","4.60","-13.44","36340","MKKPIVAVIAGGYSGEHSVSLKSAAGILSWLGSEPFSTFLVLIERDRWSVRVSEQREVPLDKNDFSFDLDGERIRFDYAYITIHGTPGENGLLQGYLDMIGIPYNTGDTLVESLTFNKYVCNRFLSGFGIRIADSMRLTGRDTQPDVADLIARMGLPLFVKPNVGGSSIATTKVVEAAQLLPAIEQAFSEGEEVMIERLICGTEVTCGAFLRKKEVVALPVTEVVAHNEFFDFDAKYNGAVEEITPARISDEATRLIQTMTARIYELLNARGIIRVDYIIEADGIPTLLEVNTTPGMTPTSFIPQQVRAAGMDMKEVLCTIIRDGLNETQ","780909 779920 [Shadowed by 860]","TIGR ID: PG0729","D-alanine-D-alanine ligase","Cytoplasm","Gapped BLAST locates numerous hits to prokaryotic ligases including D-alanyl-D-alanine ligase A in Bacillus halodurans (BAB05340) D-alanine--D-alanine ligase B in Haemophilus influenzae (gb|AAC22795) and D-alanine-D-alanine ligase A in Pseudomonas aeruginosa (gb|AAG07588).","
InterPro
IPR000291
Family
D-alanine--D-alanine ligase/VANA/B/C
PS00843\"[84-95]TDALA_DALA_LIGASE_1
PS00844\"[268-296]TDALA_DALA_LIGASE_2
InterPro
IPR011095
Domain
D-alanine--D-alanine ligase, C-terminal
PF07478\"[117-323]TDala_Dala_lig_C
InterPro
IPR011127
Domain
D-alanine--D-alanine ligase, N-terminal
PF01820\"[5-104]TDala_Dala_lig_N
InterPro
IPR011761
Domain
ATP-grasp fold
PS50975\"[122-323]TATP_GRASP
InterPro
IPR013816
Domain
ATP-grasp fold, subdomain 2
G3DSA:3.30.470.20\"[176-328]TATP_grasp_subdomain_2
InterPro
IPR013817
Domain
Pre-ATP-grasp fold
G3DSA:3.40.50.20\"[1-104]TPre-ATP_grasp
noIPR
unintegrated
unintegrated
PTHR23132\"[67-328]TPTHR23132
SSF52440\"[3-116]TSSF52440
SSF56059\"[118-326]TSSF56059


","BeTs to 11 clades of COG1181COG name: D-alanine-D-alanine ligase and related ATP-grasp enzymesFunctional Class: MThe phylogenetic pattern of COG1181 is -----qvcEbrhuj--olinxNumber of proteins in this genome belonging to this COG is 1","***** IPB000291 (D-alanine--D-alanine ligase) with a combined E-value of 1.1e-45. IPB000291A 8-28 IPB000291B 77-122 IPB000291C 154-191 IPB000291D 230-239 IPB000291E 275-304","Residues 6-322 are 30% similar to a (LIGASE SYNTHETASE CARBOXYLASE CARBAMOYL-PHOSPHATE) protein domain (PD000180) which is seen in DDL_HAEIN.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Dec 19 17:48:47 MST 2000","Tue Dec 19 17:47:08 MST 2000","Tue Dec 19 17:47:08 MST 2000","Wed May 2 11:36:18 MDT 2001","Wed May 2 11:36:18 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs in P.gingivalis.","Tue Dec 19 17:47:08 MST 2000","Wed May 2 11:36:18 MDT 2001","-50% similar to PDB:1IOV COMPLEX OF D-ALA:D-ALA LIGASE WITH ADP AND A PHOSPHORYL PHOSPHONATE (E_value = 5.2E_36);-50% similar to PDB:2DLN VANCOMYCIN RESISTANCE: STRUCTURE OF D-ALANINE:D-ALANINE LIGASE AT 2.3 ANGSTROMS RESOLUTION (E_value = 5.2E_36);-50% similar to PDB:1IOW COMPLEX OF Y216F D-ALA:D-ALA LIGASE WITH ADP AND A PHOSPHORYL PHOSPHINATE (E_value = 1.5E_35);-49% similar to PDB:2FB9 Crystal structure of the Apo form of D-alanine: D-alanine ligase (Ddl) from Thermus caldophilus: a basis for the substrate-induced conformational changes (E_value = 3.7E_34);-45% similar to PDB:1E4E D-ALANYL-D-LACATE LIGASE (E_value = 7.5E_27);","","","Residues 5 to 323 (E-value = 2e-56) place PG0656 in the Dala_Dala_ligas family which is described as D-ala D-ala ligase (PF01820)","Wed May 2 11:36:18 MDT 2001","34540521","","","","","","1","","","PG0729" "PG0658","782061","780979","1083","ATGGCGGAGCTATTCGACGAAGACGATGCAGAGGACATCTCGGACGGCGGACTCGACCCGGAGGAAGAGGACAGATACGAACATTTCCGCACTGTAGCAGATCCGGGACAGACACTTATTCGTATCGACAAATTCCTTGTCGACAGGATGAACAACGCCACACGCAGCCGTATCCAACAAGCGGCTGAAGCCGGTGCCATATTCGTCAATGGCCGACCGGTAAAGAGCAACTACCGGATCAAACCGGGCGATGTGGTCACGTTGGAACTCCTCCGGCCACGACGGGAATTGGAGATCATTCCCGAAGATATTCCACTCGATATAGTGTATGAAGACGATGTACTGCTCGTGATCAATAAGCCTGCCGGATTAGTGGTACACCCCGGCCATGGCAATTACACGGGTACACTGGTCAATGCACTGGCCTACTACCTCCGAGAGGATCCTGAATACGACCCCATGGATCCGAGTCTGGGACTCGTACACCGTATAGACAAGGACACGAGCGGCCTTCTGGTTGTTGCCAAGAGGGCCGAAGCCAAATCGGACTTGTGCAAGCAATTCTATTATAAGACGACGCATCGTTCCTATCGTGCACTGGTATGGGGACGTTTCGACTACCCGATCGGAACCATTACCGGCAATATAGGACGCGACCTGAAAGACCGCCTGCAAATGGCGGTATTCCCTCCCGATGGAGATATTGGCAAACCGGCCGTAACGCATTATCAGGTCTTGGAAGAACTGGCATACGTCAGCTGGATAGAATGCCGTCTGGAGACAGGGCGTACCCATCAGATCAGGGCACACATGAAGCACATAGGCCATACGTTGTTTGCTGACGAGCGTTATGGCGGCGATCAAATCCTGAGAGGAAACAATACGGCCAATTACCGCCGATTCGTGCAGAACTGTTTGGCTATCTGTCCACGACAGGCTCTGCATGCCAAGACATTAGGCTTTCGCCATCCTGTCACGGGAGTGGAGATGCAGTTCGACTCCGATATACCTGCCGATCTTACCACTTTGCTTGAGCGTTGGCGTACGTTTATCGCCTGCATATCTGCAGGACAGGACTATATC","5.60","-9.32","40999","MAELFDEDDAEDISDGGLDPEEEDRYEHFRTVADPGQTLIRIDKFLVDRMNNATRSRIQQAAEAGAIFVNGRPVKSNYRIKPGDVVTLELLRPRRELEIIPEDIPLDIVYEDDVLLVINKPAGLVVHPGHGNYTGTLVNALAYYLREDPEYDPMDPSLGLVHRIDKDTSGLLVVAKRAEAKSDLCKQFYYKTTHRSYRALVWGRFDYPIGTITGNIGRDLKDRLQMAVFPPDGDIGKPAVTHYQVLEELAYVSWIECRLETGRTHQIRAHMKHIGHTLFADERYGGDQILRGNNTANYRRFVQNCLAICPRQALHAKTLGFRHPVTGVEMQFDSDIPADLTTLLERWRTFIACISAGQDYI","782157 780979 [Shorter 860 126 99]","From gi:2507541: RLUD_ECOLI is responsible for synthesis of pseudouridine from uracil at two positions in the 23S rRNA. Belongs to the RLU family of pseudouridine synthases.TIGR ID: PG0730","ribosomal large subunit pseudouridine synthase D (pseudouridylate synthase) (uracil hydrolyase)","Cytoplasm","This sequence is similar to CT106 and CT658 and to BT3712.Numerous significant hits in gapped BLAST to ribosomal large chain pseudouridine synthase D; e.g. residues 30-344 are 41% similar to AE003933 of Xylella fastidiosa, residues 30-344 are 41% similar to AE002425 of Neisseria meningitidis, residues 41-348 are 40% similar to RLUD_ECOLI (AE000346) of Escherichia coli.","
InterPro
IPR002942
Domain
RNA-binding S4
PF01479\"[40-86]TS4
SM00363\"[40-105]TS4
PS50889\"[40-113]TS4
InterPro
IPR006145
Domain
Pseudouridine synthase
PD001819\"[161-205]TQ6GUL5_BBBBB_Q6GUL5;
PF00849\"[114-273]TPseudoU_synth_2
InterPro
IPR006224
Family
Pseudouridine synthase, Rlu
PS01129\"[161-175]TPSI_RLU
InterPro
IPR006225
Domain
Pseudouridine synthase, RluD
TIGR00005\"[35-348]TrluA_subfam: pseudouridine synthase, RluA f
noIPR
unintegrated
unintegrated
G3DSA:3.10.290.10\"[32-100]Tno description
PTHR10436\"[21-286]T\"[305-361]TRIBOSOMAL PSEUDOURIDINE SYNTHASE


","BeTs to 13 clades of COG0564COG name: Predicted pseudouridylate synthase family 2Functional Class: JThe phylogenetic pattern of COG0564 is ----YqVCEBRHUJGPOLINXNumber of proteins in this genome belonging to this COG is 3","***** IPB002990 (Pseudouridine synthase, Rlu family) with a combined E-value of 8.9e-42. IPB002990A 108-125 IPB002990B 161-199 IPB002990C 261-285","Residues 37-84 are 52% similar to a (PROTEIN PSEUDOURIDINE SYNTHASE SFHB) protein domain (PD013642) which is seen in YBC5_CHLVI.Residues 109-346 are 47% similar to a (PROTEIN PSEUDOURIDINE SYNTHASE RIBOSOMAL) protein domain (PD001819) which is seen in YBC5_CHLVI.","","Thu Jun 14 13:18:50 MDT 2001","","Thu Jun 14 13:18:50 MDT 2001","Thu Jun 14 13:18:50 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:18:50 MDT 2001","Thu Jun 14 13:18:50 MDT 2001","","Fri Dec 26 13:33:38 2003","Wed Mar 22 12:26:04 MST 2000","Fri Dec 26 13:33:38 2003","Tue Dec 19 17:55:59 MST 2000","Fri Dec 26 13:33:38 2003","Fri Dec 26 13:33:38 2003","yes","Fri Feb 20 15:41:32 MST 1998","Residues 45-337 are 22% similar to PG1486, a conserved hypothetical protein.Residues 106-339 are 27% similar to PG1094, a probable pseudouridine synthase.","Thu Jun 14 16:40:40 MDT 2001","Tue Apr 3 13:53:46 MDT 2001","-52% similar to PDB:1QYU Structure of the catalytic domain of 23S rRNA pseudouridine synthase RluD (E_value = 1.8E_45);-52% similar to PDB:1V9F Crystal structure of catalytic domain of pseudouridine synthase RluD from Escherichia coli (E_value = 1.8E_45);-52% similar to PDB:2IST crystal structure of RluD from E. coli (E_value = 1.8E_45);-57% similar to PDB:1PRZ Crystal structure of pseudouridine synthase RluD catalytic module (E_value = 2.6E_44);-51% similar to PDB:1V9K The crystal structure of the catalytic domain of pseudouridine synthase RluC from Escherichia coli (E_value = 1.5E_28);","","","Residues 40 to 86 (E-value = 8.7e-13) place PG0658 in the S4 family which is described as S4 domain (PF01479)Residues 114 to 273 (E-value = 5.8e-60) place PG0658 in the PseudoU_synth_2 family which is described as RNA pseudouridylate synthase (PF00849)","Fri Dec 26 13:33:38 2003","","","","","","","1","","","PG0730" "PG0659","782767","782114","654","ATGCAACTAAAGAATTTTCATCATAAATATCCCGTCCTCTTCCACCTGATTTTGATGACTTTGGCTTCAGGGCTTATCCTCATGGGTATCTTGTTCGGACTGGATATTTACACGAGACACGACAGCTCTATCGTGATGCCGGAGTTGCGTGGCAAAGACTTGAAGGAGGCAGAGCGTTTGCTGTCGAGCCATAATCTTCGCTACGAACTTGTCGATTCCGTTTATGACAAATCCTTGGCTCCGGGTGTCGTAGTAGAAATGGTTCCACAGAGCGGCAATACCGTCAAACCGGGGCGGATCATTTTCCTTTCGATCAATGCGAGATCGGCACGGAAGGGGATCGTCCCTGATCTGAAAGATATGTCCGGCCGCCAAGCTCTGGCCATCCTGAAAGGATTGGGCTTCGAACAAGTCACAGAGCGATACATCTCAGGCGATTTTGTCAATCTGACAGACGGAGTCGAACTGGCCGACGGCCGGAATGTACTTGCCGGTACTCGCCTGCCGATAACGACTCCGTTGGTGCTACGGGTGATCAACGGCTATGCGCCGCTTCCTGCTGATTCGTCACTGATCGACGAATCGATCACCTACGGTTCATCGCAGGACAGTGCTTCGGGGAAGACCGAAGAGGAGAATAGCGAATCGTGGTGG","6.00","-2.79","24014","MQLKNFHHKYPVLFHLILMTLASGLILMGILFGLDIYTRHDSSIVMPELRGKDLKEAERLLSSHNLRYELVDSVYDKSLAPGVVVEMVPQSGNTVKPGRIIFLSINARSARKGIVPDLKDMSGRQALAILKGLGFEQVTERYISGDFVNLTDGVELADGRNVLAGTRLPITTPLVLRVINGYAPLPADSSLIDESITYGSSQDSASGKTEEENSESWW","782767 782114","TIGR ID: PG0731","conserved hypothetical protein","Outer membrane, Cytoplasm, Extracellular","No significant hits.","
InterPro
IPR005543
Domain
PASTA
PF03793\"[44-107]T\"[113-180]TPASTA
SM00740\"[40-107]T\"[109-180]TPASTA
PS51178\"[41-107]T\"[109-180]TPASTA
noIPR
unintegrated
unintegrated
SSF54184\"[43-107]TSSF54184


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Sep 10 14:39:07 2004","Tue Dec 19 18:04:27 MST 2000","Tue Dec 19 18:04:27 MST 2000","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Tue Dec 19 18:04:27 MST 2000","Fri Sep 10 14:39:07 2004","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540522","","","","","","1","","","PG0731" "PG0660","782762","783076","315","TTGCATGCCAACGGAATATTTTTTGTTCCAAAATACAGTTCAAAGTACGGAAAAAAGCAGCAAACAGAAAAACAGTGGCCTGTCCCGGAAATGGGTTGGCAGCCGGGAGCCGTTAATTCGAATTTTGCTTTGCAGTCTTCGGCGTTAATCCTAATCGGCGGCTTTATCCGGATCATTAAGGTGGATTCGAATGCGACAAGCTGCATCCATTTTGGAGGCATTGATGCCAAACCATTGCTCCTACAGATGAATGCCTACAGCCTGCCGGCTGCCGAAATACGAACCAAAAACGGTCGGATTGTGGCGCGTGTTTTC","10.70","7.41","11546","LHANGIFFVPKYSSKYGKKQQTEKQWPVPEMGWQPGAVNSNFALQSSALILIGGFIRIIKVDSNATSCIHFGGIDAKPLLLQMNAYSLPAAEIRTKNGRIVARVF","782762 783076","TIGR ID: PG0732","hypothetical protein","Periplasm","No hits.","
noIPR
unintegrated
unintegrated
tmhmm\"[41-59]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Dec 19 18:06:14 MST 2000","Tue Dec 19 18:06:14 MST 2000","Tue Dec 19 18:06:14 MST 2000","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Tue Dec 19 18:06:14 MST 2000","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540523","","","","","","1","","","PG0732" "PG0660.1","783313","783005","309","TTGTTGTTGTTTTTAATTGATGAAGCGGTACAAAACTACAGAAAATATAGTGATGGTAAGGGAAATATGCACAAGGCAGATCAGGATGGAGTAGCTTTTTTCAGGACACGTCACACGTCACACCAAACTTTTCCTATTGTACGCTCCGAAAAACGTAGGGCGAGAAAATTTTCGTTTTCGTGTGGGAAGCAAAAAATTTTCGCTCCAAAACAGAAAAATTCTCACGCCACATTTTCAGAAAACACGCGCCACAATCCGACCGTTTTTGGTTCGTATTTCGGCAGCCGGCAGGCTGTAGGCATTCATCTG","","","11859","LLLFLIDEAVQNYRKYSDGKGNMHKADQDGVAFFRTRHTSHQTFPIVRSEKRRARKFSFSCGKQKIFAPKQKNSHATFSENTRHNPTVFGSYFGSRQAVGIHL","","NO TIGR ID corresponds to this gene.","hypothetical protein","Periplasm, Cytoplasm, Extracellular","No significant hits.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Wed Dec 20 16:42:13 MST 2000","Wed Dec 20 16:42:13 MST 2000","Wed Dec 20 16:42:13 MST 2000","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG0661","783315","783914","600","ATGTTTTCCGGAATCGTAGAAGAATATGCCCAAGTGACGGATCTCCGTCACGAAAATGACAATCTGCACATCACGATGACGTGTTCTTTCGTCAATGAACTCAAGATAGACCAAAGCATCGCACACAATGGCGTATGCCTCACCGTAGTCAGCAAGACGGACACCACCTATACCGTGACTGCCATACGCGAAACCCTCGAACGTTCCAACCTCGGACTCCTCCAAATAGGCGATCTCGTCAATCTGGAACGAAGCATGATGATGGGCGGCCGGCTCGATGGACACATCGTGCAGGGACACGTAGATCAGACGGCTGTATGTACCGCTGTGGAAGAAGCCGGCGGCAGTCACTACTATTCGTTCGAATACAAGCTCGACAAGGAGATGGCTCGCCAAGGCTATATGACCGTGGAGAAAGGATCCGTATGCGTCAATGGCGTGAGCCTGACCGTATGCGACTCCGGCATGAACAACTTCCGTGTGGCTATCATCCCCTATACTCGCGACCATACGAACTTCTGCCGCATTGTCTCGGGTAGTGTGGTCAATCTGGAATTCGACATTGTGGGGAAATATCTCAGCAAGATGCTCCAATACCAA","5.30","-6.60","22294","MFSGIVEEYAQVTDLRHENDNLHITMTCSFVNELKIDQSIAHNGVCLTVVSKTDTTYTVTAIRETLERSNLGLLQIGDLVNLERSMMMGGRLDGHIVQGHVDQTAVCTAVEEAGGSHYYSFEYKLDKEMARQGYMTVEKGSVCVNGVSLTVCDSGMNNFRVAIIPYTRDHTNFCRIVSGSVVNLEFDIVGKYLSKMLQYQ","783315 783914","Riboflavin synthase is necessary for the synthesis of riboflavin from 5-amino-6-(1'-D)-ribityl-amino-2,4 pyrimidinedione. The alpha subunit is reported to separately catalyze the formation of riboflavin from 6,7-dimethyl-8-lumazine. The beta subunit is PG1252.TIGR ID: PG0733","riboflavin synthase alpha subunit","Cytoplasm","Significant hits with gapped BLAST to riboflavin synthases; e.g. residues 1-197 are 39% similar to riboflavin synthase alpha subunit (U27202) of Actinobacillus pleuropneumoniae, residues 1-197 are 37% similar to riboflavin synthase alpha chain (Z99116) of Bacillus subtilis, residues 1-187 are 33% similar to riboflavin synthase alpha chain (U32834) of Haemophilus influenzae.","
InterPro
IPR001783
Family
Lumazine-binding protein
PD004110\"[4-87]T\"[99-192]TLum_binding
PIRSF000498\"[1-200]TRiboflavin_syn_A
PTHR21098\"[1-199]TLumazine_bd
PF00677\"[3-85]T\"[137-187]TLum_binding
TIGR00187\"[1-200]TribE
PS51177\"[1-95]T\"[96-197]TLUMAZINE_BIND
noIPR
unintegrated
unintegrated
G3DSA:2.40.30.20\"[1-95]T\"[100-200]TG3DSA:2.40.30.20
SSF63380\"[1-91]T\"[92-198]TSSF63380


","BeTs to 9 clades of COG0307COG name: Riboflavin synthase alpha chainFunctional Class: HThe phylogenetic pattern of COG0307 is ----yqvcebrhuj----in-Number of proteins in this genome belonging to this COG is 1","***** IPB001783 (Riboflavin synthase alpha chain family lumazine binding domain) with a combined E-value of 4.5e-52. IPB001783A 1-12 IPB001783B 33-50 IPB001783C 64-107 IPB001783D 139-151 IPB001783E 159-187 IPB001783B 135-152 IPB001783D 37-49","Residues 31-197 are 42% similar to a (RIBOFLAVIN SYNTHASE ALPHA FLAVOPROTEIN) protein domain (PD004110) which is seen in RISA_ACTPL.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Tue Mar 26 17:35:05 2002","Wed Mar 22 11:46:52 MST 2000","Wed Apr 19 15:34:09 MDT 2000","Tue Mar 26 17:35:05 2002","Wed Feb 21 15:31:42 MST 2001","Wed Feb 21 15:31:42 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Wed Apr 19 15:34:09 MDT 2000","Wed Feb 21 15:31:42 MST 2001","-52% similar to PDB:1KZL Riboflavin Synthase from S.pombe bound to Carboxyethyllumazine (E_value = 6.0E_22);-53% similar to PDB:1I8D CRYSTAL STRUCTURE OF RIBOFLAVIN SYNTHASE (E_value = 6.2E_19);","","","Residues 3 to 85 (E-value = 8.6e-20) place PG0661 in the Lum_binding family which is described as Lumazine binding domain (PF00677)Residues 98 to 187 (E-value = 4.9e-09) place PG0661 in the Lum_binding family which is described as Lumazine binding domain (PF00677)","Fri Apr 20 12:55:44 MDT 2001","34540524","","","Eberhardt S, Richter G, Gimbel W, Werner T, Bacher A. Cloning, sequencing, mapping and hyperexpression of the ribC gene coding for riboflavin synthase of Escherichia coli. Eur J Biochem 1996 Dec 15;242(3):712-9. PubMed: 9022701. ","","Wed Apr 19 15:42:51 MDT 2000","1","","","PG0733" "PG0662","783914","784462","549","ATGAACCCGAACGACTTTTACTCCCTGATCGAACAGCGACAGAGCGATCGCAAGTTCGATCCCGACCGCCCCGTACCCGAAGACGTGCTTCAGCGCATCATCGAAGCGGGGCGTCTCTCCCCCTCAGCCTGCAATTCGCAGCCTTGGAGCTTTGTCGTCGTCACCGATCCCGACACTCGCAGACAACTGGCTGAAGCCTCATCGTCACGGTTATTGGGTATGAATCACTTCACGCGTCAGGCTCCCGTACACATCGTATTAGTCGAAGAGAAAGCCAACTTCACGGCGACCATCGGGGGGAAAATGAAAAAAATCCACTATGCCAATATCGACCTCGGCATAGCCGCCGCACACATCACGCTGGCAGCCACAGCCGAAGGTCTCGGCAGCTGCATCATAGGCTGGGTAAACGAAGCCAAGATCCGCGAAATACTGGGCATTCCCTCCGGACGCCGCGTAGTCATGAACATCATGCTCGGCTATTCCGCCGATCCGCACAGGGCCAAGAAGCGCAAAGAAACCTCGGAGGTTCTTCACCGCGAGAAGTGG","9.80","5.35","20469","MNPNDFYSLIEQRQSDRKFDPDRPVPEDVLQRIIEAGRLSPSACNSQPWSFVVVTDPDTRRQLAEASSSRLLGMNHFTRQAPVHIVLVEEKANFTATIGGKMKKIHYANIDLGIAAAHITLAATAEGLGSCIIGWVNEAKIREILGIPSGRRVVMNIMLGYSADPHRAKKRKETSEVLHREKW","783914 784462","TIGR ID: PG0734","possible NADH oxidase","Cytoplasm","One significant hit and numerous weak hits in gapped BLAST; e.g. residues 9-183 are 30% similar to gb|AAB91006.1| NADH oxidase of Archaeoglobus fulgidus, residues 10-178 are 30% similar to gb|AAD35471.1|AE001718_8 bacterioferritin comigratory protein/NADH dehydrogenase of Thermotoga maritima, residues 8-183 are 29% similar to gb|AAD35468.1|AE001718_5 NADH oxidoreductase, putative of Thermotoga maritima.","
InterPro
IPR000415
Family
Nitroreductase
PF00881\"[10-161]TNitroreductase
noIPR
unintegrated
unintegrated
G3DSA:3.40.109.10\"[2-178]TG3DSA:3.40.109.10
PIRSF000232\"[4-183]TNADHdh_nitroRD
PTHR23026\"[36-183]TPTHR23026
PTHR23026:SF47\"[36-183]TPTHR23026:SF47
SSF55469\"[4-183]TSSF55469


","BeTs to 9 clades of COG0778COG name: Nitroreductase family proteinsFunctional Class: CThe phylogenetic pattern of COG0778 is AmT--qVcEBRHUJ-------Number of proteins in this genome belonging to this COG is 3","No significant hit to the Blocks database.","Residues 9-183 are 30% similar to a (PROTEIN OXIDOREDUCTASE FLAVOPROTEIN FMN) protein domain (PD001645) which is seen in Y226_ARCFU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Dec 20 17:01:38 MST 2000","Tue Mar 27 14:41:16 MST 2001","Wed Dec 20 16:47:16 MST 2000","Wed Dec 20 17:01:38 MST 2000","Tue Mar 27 14:41:16 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 3-182 are 35% similar to PG0284, a predicted NAD(P)H-oxidoreductase/nitroreductase.Residues 6-172 are 29% similar to PG0596, a predicted NADPH-oxidoreductase.","Tue Apr 3 13:58:08 MDT 2001","Tue Mar 27 14:41:16 MST 2001","-45% similar to PDB:1NOX NADH OXIDASE FROM THERMUS THERMOPHILUS (E_value = 9.0E_11);","","","Residues 10 to 161 (E-value = 8.5e-34) place PG0662 in the Nitroreductase family which is described as Nitroreductase family (PF00881)","Tue Mar 27 14:41:16 MST 2001","34540525","","","","","","1","","","PG0734" "PG0663","784524","785735","1212","ATGTACGACATTCAAAAAATCAGGGAGGACTTCCCCATCCTCCATACCCGGGTACACGGTAAACCTCTCATCTATCTGGACAATGCCGCCACGACACAGAAACCCATAGCGGTATTAGACCAAATCGAACGAGCCTACCGCACATTCAATGCCAATATCCACCGCGGCGTACACCATCTGAGTCAGGTGGCTACGGAGCAACACGAAAATGCTCGCAAGCGGATAGCCCGCTACATCGGAGCGGAAGACCCCAAAGAGGTGCTCTTTACGCGCGGCACCACAGAGGCAATCAATCTGGTGGCCTCTTCGTTCGGCCAAGCTTTCGTCCGCTCCGGCGATGAGATTATCATCAGTACCCTCGAACACCATTCGAATATCGTCCCATGGCAACTTTTGGCCGAACGTACCGGTGCTCGGCTCAGAGTGATCCGGTTGACCGAATCGGGCGAACTGGATGTGGAGCATTTCCGGTCTCTACTGAACGAACGTACCAAAATCGTTTCGATAGCCCACGTCAGCAATGTGCTCGGCACCATCAATCCCATACGCCGGATAACGGATTTGGCTCATGCCGCCGGAGTACCCGTTCTGGTCGATGGAGCACAGGCCATCGCCCACTGCCGGGTAGATGTTCGGGAGTTGGGAGCGGATTTCTACGCCTTCTCCGGCCATAAAGTCTACGCACCCACAGGAATAGGCGTATTGTATGGCAAAGCGGAGTGGTTGGAGAAGATCCCCCCCTACCACGGTGGCGGAGAGATGATCGCCAAGGTGACATTCGAAAAGACCACCTACAACGAATTGCCCTATAAGTTCGAAGCCGGCACGCCGGACTATGTCGGCTCCACGGCTTTGGCCACAGCTCTCGACTACATCGAAGGATTGGGTTTGGAAGCCATAGCCGCACATGAAGACAAACTCCTGCGCATGGCCACCGAAGGCGTGAGAGCTTTCCCCAATGCCCGTATCATCGGAGAAGCCGAACACAAGAGCGGTGTGCTCTCTTTCCTTATAGGGGACATTCATCCCTATGACCTCGGCATGCTGCTCGATCGGCTGGGTATAGCCATCCGTACCGGACATCACTGTGCCGAACCGCTACTCGAAAGCATGGGACTCAATGCCACGGCTCGCGCCTCCTTTGCTCTCTACAATACCGAGGAGGAAGTGGAGCAATTCCTCCAAGCCTTGAAACGTGTAGTAAGCATGTTC","6.60","-3.49","44776","MYDIQKIREDFPILHTRVHGKPLIYLDNAATTQKPIAVLDQIERAYRTFNANIHRGVHHLSQVATEQHENARKRIARYIGAEDPKEVLFTRGTTEAINLVASSFGQAFVRSGDEIIISTLEHHSNIVPWQLLAERTGARLRVIRLTESGELDVEHFRSLLNERTKIVSIAHVSNVLGTINPIRRITDLAHAAGVPVLVDGAQAIAHCRVDVRELGADFYAFSGHKVYAPTGIGVLYGKAEWLEKIPPYHGGGEMIAKVTFEKTTYNELPYKFEAGTPDYVGSTALATALDYIEGLGLEAIAAHEDKLLRMATEGVRAFPNARIIGEAEHKSGVLSFLIGDIHPYDLGMLLDRLGIAIRTGHHCAEPLLESMGLNATARASFALYNTEEEVEQFLQALKRVVSMF","784524 785735","TIGR ID: PG0735","possible nifS-like aminotransferase","Cytoplasm","Gapped BLAST shows strong similarity to numerous proteins including 51% similarity to a nifS-like protein (AAF82074) in Mycobacterium avium, 49% similarity to aminotransferase, class V in Vibrio cholerae (gb|AAF95453) and 49% similarity to a cysteine desulfurase in Pectobacterium chrysanthemi (emb|CAC17128).This sequence is similar to BT3409.","
InterPro
IPR000192
Family
Aminotransferase, class V
PF00266\"[24-393]TAminotran_5
InterPro
IPR010970
Family
Cysteine desulphurases, SufS
TIGR01979\"[5-404]TsufS
InterPro
IPR015421
Domain
Pyridoxal phosphate-dependent transferase, major region, subdomain 1
G3DSA:3.40.640.10\"[37-295]TPyrdxlP-dep_Trfase_major_sub1
InterPro
IPR015424
Domain
Pyridoxal phosphate-dependent transferase, major region
SSF53383\"[2-401]TPyrdxlP-dep_Trfase_major
noIPR
unintegrated
unintegrated
PTHR11601\"[23-404]TPTHR11601


","BeTs to 10 clades of COG0520COG name: Selenocysteine lyaseFunctional Class: EThe phylogenetic pattern of COG0520 is --t---vcEbrhujgpolin-Number of proteins in this genome belonging to this COG is 3","***** DM00813 (AMINOTRANSFERASES CLASS-V PYRIDOXAL-PHOSPHATE ATTACHMENT SI) with a combined E-value of 1.5e-08. DM00813A 197-225","Residues 51-236 are 57% similar to a (PYRIDOXAL PHOSPHATE AMINOTRANSFERASE TRANSFERASE PROTEIN) protein domain (PD000087) which is seen in P77444_ECOLI.Residues 1-46 are 58% similar to a (PROTEIN OF NIFS NIFS-LIKE) protein domain (PD007418) which is seen in O32975_MYCLE.Residues 328-399 are 50% similar to a (PROTEIN AMINOTRANSFERASE NIFS NIFS-LIKE) protein domain (PD006196) which is seen in O32164_BACSU.Residues 115-314 are 30% similar to a (PROTEIN NIFS-LIKE PUTATIVE) protein domain (PD133654) which is seen in Q9ZKG0_BBBBB.Residues 235-307 are 45% similar to a (PROTEIN NIFS OF AMINOTRANSFERASE) protein domain (PD186234) which is seen in O32975_MYCLE.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Mar 16 08:21:19 MST 2001","Mon Dec 22 10:58:43 2003","Wed Dec 20 17:06:51 MST 2000","Fri Mar 16 08:21:19 MST 2001","Fri Mar 16 08:21:19 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG0663 is 27% similar to PG1526, a NIFS-like aminotransferase.","Fri Mar 16 08:21:19 MST 2001","Fri Mar 16 08:21:19 MST 2001","-68% similar to PDB:1I29 CRYSTAL STRUCTURE OF CSDB COMPLEXED WITH L-PROPARGYLGLYCINE (E_value = 7.5E_112);-68% similar to PDB:1JF9 Crystal Structure of selenocysteine lyase (E_value = 7.5E_112);-68% similar to PDB:1KMJ E. coli NifS/CsdB protein at 2.0A with the cysteine persulfide intermediate (residue CSS). (E_value = 7.5E_112);-68% similar to PDB:1KMK E. coli NifS/CsdB protein at 2.20A with the cysteine perselenide intermediate (residue CSZ). (E_value = 7.5E_112);-69% similar to PDB:1T3I Structure of slr0077/SufS, the Essential Cysteine Desulfurase from Synechocystis PCC 6803 (E_value = 2.4E_110);","","","Residues 32 to 393 (E-value = 3.6e-21) place PG0663 in the Aminotran_5 family which is described as Aminotransferase class-V (PF00266)","Fri Mar 16 08:21:19 MST 2001","34540526","","","","","","1","","","PG0735" "PG0664","785749","786351","603","ATGCTGCTCTCTCGCTACATAGACGATGACTTGCGTGAATGCGGTTGCGACGAAGCCGGTCGCGGCTGTCTGGCCGGTCCTGTCTATGCAGCGGCTGTGATCCTACCGGCCGACTTCTCTCATCCCCTGCTGAATGATTCGAAACAACTGAGCGAAAAGCAACGCTATACCCTTCGCCCTGTCATAGAATCCGAGACTATCGGATGGGGGATAGGCATTGTGAGTCCGCAGGAGATAGACGAGATCAATATCCTCAGAGCTTCCTTTCTCGCGATGCATCGCGCCATAGAGCAGTTGCCTTTTCGCCCCGAAAGATTGCTGATCGACGGCAATCGGTTCGATCCTTTCGAACAAATCCCTCACCACTGTATCGTGGGAGGCGATGCCCGCTATCGCTCCATCGCAGCAGCTTCCATTTTGGCCAAAACCTATCGGGACGACTCGATGCTCCGTCTGAATAAGGACTTCCCGATGTACGGATGGGAGCGCAACAAAGGTTATCCGTCACCTGCACACAAATCCGCTATTCGTCGTTTCGGAGTTTCGCCACATCACCGTCTTACTTTCCGTGGAGTGGTGGATGCAGACCGGCCGACAACAGAA","7.10","0.50","22718","MLLSRYIDDDLRECGCDEAGRGCLAGPVYAAAVILPADFSHPLLNDSKQLSEKQRYTLRPVIESETIGWGIGIVSPQEIDEINILRASFLAMHRAIEQLPFRPERLLIDGNRFDPFEQIPHHCIVGGDARYRSIAAASILAKTYRDDSMLRLNKDFPMYGWERNKGYPSPAHKSAIRRFGVSPHHRLTFRGVVDADRPTTE","785749 786351","TIGR ID: PG0736","ribonuclease HII","Cytoplasm","Residues 1-168 are identical to the previously sequenced gi|7227927|sp|Q51832|RNH2_PORGI(RNASE HII).","
InterPro
IPR001352
Family
Ribonuclease HII/HIII
PTHR10954\"[1-201]TRNase_HII/HIII
PF01351\"[14-192]TRNase_HII
InterPro
IPR012337
Domain
Polynucleotidyl transferase, Ribonuclease H fold
SSF53098\"[11-197]TRNaseH_fold
noIPR
unintegrated
unintegrated
G3DSA:3.30.420.10\"[12-154]TG3DSA:3.30.420.10


","BeTs to 15 clades of COG0164COG name: Ribonuclease HIIFunctional Class: LThe phylogenetic pattern of COG0164 is amtkyqvcebrhuj--o-inxNumber of proteins in this genome belonging to this COG is 1","***** PF01351 (Ribonuclease HII) with a combined E-value of 8.7e-22. PF01351A 15-26 PF01351B 43-58 PF01351C 126-146","Residues 15-81 are 50% similar to a (RIBONUCLEASE HII PROTEIN RNASE) protein domain (PD003015) which is seen in Q9Z962_BBBBB.Residues 84-189 are 50% similar to a (RIBONUCLEASE HII RNASE HYDROLASE) protein domain (PD005501) which is seen in Q9Z962_BBBBB.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Mar 21 16:41:19 MST 2000","Tue Dec 12 13:46:48 MST 2000","Wed May 23 13:18:08 MDT 2001","Wed May 23 13:18:08 MDT 2001","Wed May 23 13:18:08 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed May 23 13:18:08 MDT 2001","-63% similar to PDB:2ETJ Crystal structure of Ribonuclease HII (EC 3.1.26.4) (RNase HII) (tm0915) from THERMOTOGA MARITIMA at 1.74 A resolution (E_value = 2.1E_35);-47% similar to PDB:1UAX Crystal structure of the ribonuclease H2 from Pyrococcus horikoshii OT3 (E_value = 3.1E_10);","","","Residues 14 to 192 (E-value = 5.7e-61) place PG0664 in the RNase_HII family which is described as Ribonuclease HII (PF01351)","Wed May 23 13:18:08 MDT 2001","34540527","","","","","","1","","","PG0736" "PG0665","786329","786604","276","ATGCAGACCGGCCGACAACAGAATAAAGGGACTATATTTGCATCACTGAATATGAGCAGGAAAAATCGGCACAATGTACTCCCGCGAGCCACGATGCTCCGAAAGAAAGCCATTCAGATCCGACTGAACGAAGCGGAGCACAAGGCCGTCGAGACCTATTGCAGCCGCTTCAAAGTAGAGAACCGCTCCCGTTGGATCCGAGAAACGCTGATGAAAGAAGTGATACACCGGTTAGAAAGCGACACTCCCTTGCTTTTTCGAGAGGAGGAAATGCGA","11.30","9.66","11067","MQTGRQQNKGTIFASLNMSRKNRHNVLPRATMLRKKAIQIRLNEAEHKAVETYCSRFKVENRSRWIRETLMKEVIHRLESDTPLLFREEEMR","786329 786604 [Delay by 12 868 35 36]","TIGR ID: PG0737","hypothetical protein","Cytoplasm","No significant hits.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Dec 20 17:44:19 MST 2000","Wed Dec 20 17:44:19 MST 2000","Wed Dec 20 17:44:19 MST 2000","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540528","","","","","","1","","","PG0737" "PG0666","786604","787053","450","ATGACAGCCCCTACCTTTGCCACGGATGACATCCGCTACATGCGGATCGCGCTCGAAGAGGCACGAGCGGCTGCTGACGAAGGAGAGATTCCTATCGGAGCCGTGATCGTCTGCAAAGGGCAGATCGTTGCGCGTGCTCACAACAGAGTGGAAAGGCTAAACGACCCTACGGCTCATGCCGAGATGCTTGCCATCACGATGGCCGTAGATGCCATAGGGGGGAAATACCTCCGCGACTGCACGCTGTACGTGACTGTCGAACCCTGCCTGATGTGTGCTGGCGCACTTCGCTGGACACAAATACCGCGAGTAGTGTACGGAGCATCCGAACCCAAAGTGGGCTACAGGCTGTTCACCGATCATGCACTCCATCCCAAATGCCACGTAGAAGGCGGTATATTGGCGGACGAATCGGAGAATCTGATGCGTAGTTTCTTTGCCGAACGGCGG","6.30","-2.04","16574","MTAPTFATDDIRYMRIALEEARAAADEGEIPIGAVIVCKGQIVARAHNRVERLNDPTAHAEMLAITMAVDAIGGKYLRDCTLYVTVEPCLMCAGALRWTQIPRVVYGASEPKVGYRLFTDHALHPKCHVEGGILADESENLMRSFFAERR","786487 787053 [Shorter 872 95 99]","TIGR ID: PG0738","cytosine deaminase","Cytoplasm","Several hits in gapped BLAST, a few to cytosine deaminases (from the Chlamydias: trachomatis, gi: 7445150, and pneumoniae, gi: 7445149), but many others to hypothetical proteins (from B. subtilis gi: 112703, for example). This protein is similar to CT844, a predicted cytosine deaminase from Chlamydia trachomatis.","
InterPro
IPR002125
Domain
CMP/dCMP deaminase, zinc-binding
PF00383\"[7-108]TdCMP_cyt_deam_1
PS00903\"[59-96]TCYT_DCMP_DEAMINASES
noIPR
unintegrated
unintegrated
G3DSA:3.40.140.10\"[8-150]TG3DSA:3.40.140.10
PTHR11079\"[9-150]TPTHR11079
PTHR11079:SF9\"[9-150]TPTHR11079:SF9
SSF53927\"[7-150]TSSF53927


","BeTs to 8 clades of COG0590COG name: Cytosine deaminase-related enzymesFunctional Class: FThe phylogenetic pattern of COG0590 is ----Yq-CeBRh------inxNumber of proteins in this genome belonging to this COG is 2","***** IPB002125 (Cytidine and deoxycytidylate deaminase zinc-binding region) with a combined E-value of 3.6e-09. IPB002125A 59-65 IPB002125B 83-92","Residues 13-58 are identical to a (PROTEIN HYDROLASE ZINC &) protein domain (PD085102) which is seen in Q51833_PORGI.Residues 110-150 are 97% similar to a (RNHB & PGAA GENES) protein domain (PD085070) which is seen in Q51833_PORGI.Residues 59-109 are identical to a (PROTEIN DEAMINASE HYDROLASE ZINC BIOSYNTHESIS) protein domain (PD001793) which is seen in Q51833_PORGI.","","Thu Jun 14 13:19:33 MDT 2001","","Thu Jun 14 13:19:33 MDT 2001","Thu Jun 14 13:19:33 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:19:33 MDT 2001","Thu Jun 14 13:19:33 MDT 2001","","","Thu Mar 30 17:02:22 MST 2000","Mon Apr 10 14:07:57 MDT 2000","Tue Apr 3 14:02:35 MDT 2001","Tue Apr 3 14:02:35 MDT 2001","Tue Apr 3 14:02:35 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 10-107 share 46% identity with PG1506, a possible deaminase.Residues 8-150 share 32% identity with PG0142,riboflavin-specific deaminase.","Thu Jun 14 16:45:51 MDT 2001","Tue Apr 3 14:02:35 MDT 2001","-62% similar to PDB:2B3J Crystal Structure of Staphylococcus aureus tRNA Adenosine Deaminase, TadA, in Complex with RNA (E_value = 1.9E_31);-62% similar to PDB:2A8N Biochemical and Structural Studies of A-to-I Editing by tRNA:A34 Deaminases at the Wobble Position of Transfer RNA (E_value = 4.3E_28);-66% similar to PDB:1WWR Crystal structure of tRNA adenosine deaminase TadA from Aquifex aeolicus (E_value = 2.8E_27);-59% similar to PDB:1Z3A Crystal structure of tRNA adenosine deaminase TadA from Escherichia coli (E_value = 2.4E_23);-52% similar to PDB:1TIY X-RAY STRUCTURE OF GUANINE DEAMINASE FROM BACILLUS SUBTILIS NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET SR160 (E_value = 2.9E_16);","","","Residues 8 to 108 (E-value = 1.4e-44) place PG0666 in the dCMP_cyt_deam family which is described as Cytidine and deoxycytidylate deaminase zinc-binding region (PF00383)","Tue Apr 3 14:02:35 MDT 2001","34540529","","Rigg,G.P. and Roberts,I.S. Molecular analysis of PgaA an antigen from periodontopathogen Porphyromonas gingivalis. Unpublished; gi: 1296969.","","Thu Mar 30 17:02:22 MST 2000","","1","","","PG0738" "PG0667","787088","787999","912","ATGGCAGCATTCAGTGTACATATATTGGGCTGCGGATCTGCCCTGCCAACCACACACCACCATCCCTCTTCGCAAGTAATCGACCTGCGCGACAAACTCTACATGATCGATTGCGGAGAAGGTGTCCAGCGACAATTCAGACACGAAAAGCTCCATTTCGGACGTCTCATTCATATCTTCATCAGCCATCTCCATGGCGATCACTGTTTCGGTCTGCCCGGATTTATCTCCACGCTCGGTCTGCTGGGGCGTACCGGCACCCTGCATGTACATGGGCCGGAGGGAATAGAGCGTTTCCTCAGCCCCATATTGGAGCAGTTCTGTCACCGAATGCCCTATCAGGTGGAGATACATACGATCGATGCCTCCCGACATGCGCTTGTACATGAGGACAAATCCGTCAAAGTCTATAGCATACCGCTCAGCCACCGCATCCCTGCGGTGGGCTACCTCTTCGAAGAGAAATGCCGTGCAAGGCATCTGAACAAAGCGGCTGCCGAGTTCTACAATATTCCGCTTGCCGAATATCCCCTCATCATAGAAGGATCCGATTACACGACACCGGATGGGCGGATCATCCCCAACCGACACCTCACGACCCCGGGTACACCACCCAGACGATATGCTTACTGCTCGGACACGGAGTTTTGTCCCTCCATCGTCCCTATTATTCAAGGTGTGGATTTGCTCTACCATGAAGCTACTTTTATGGAGGAGGATCGGGCAAGAGCCAAAGAGACTTTCCACAGTACAGCCAAAGAAGCCGCCGAAATAGCACGACAGGCAGGAGCAAAACGCCTCCTCATCGGGCATTACTCCGGCAGATACAAGGACGTCCAAGGTTTGCTGGAAGAAGCTCAAAGCGTATTCAAGCCAACTATTGCCGCCAATGAAAGAATGCGCATCGATCTG","7.30","2.97","34304","MAAFSVHILGCGSALPTTHHHPSSQVIDLRDKLYMIDCGEGVQRQFRHEKLHFGRLIHIFISHLHGDHCFGLPGFISTLGLLGRTGTLHVHGPEGIERFLSPILEQFCHRMPYQVEIHTIDASRHALVHEDKSVKVYSIPLSHRIPAVGYLFEEKCRARHLNKAAAEFYNIPLAEYPLIIEGSDYTTPDGRIIPNRHLTTPGTPPRRYAYCSDTEFCPSIVPIIQGVDLLYHEATFMEEDRARAKETFHSTAKEAAEIARQAGAKRLLIGHYSGRYKDVQGLLEEAQSVFKPTIAANERMRIDL","787040 787999 [Shadowed by 872]","TIGR ID: PG0739","tRNaseZ","Cytoplasm","Significant hits to hypothetical / ElaC / hydrolase proteins with gapped BLAST; e.g. residues 9-298 are 35% similar to ElaC protein(Q47012) of E. coli, residues 6-304 are 36% similar to hypothetical protein (Q55132) of Synechocystis sp., residues 8-298 are 28% similar to Sulphohydrolase/Glycosulfatase (AE001308) of Chlamydia trachomatis, residues 1-288 are 27% similar to putative hydrolase (AL136503) of Streptomyfes coelicolor.","
InterPro
IPR001279
Domain
Beta-lactamase-like
PF00753\"[21-271]TLactamase_B
InterPro
IPR013471
Family
Ribonuclease Z
TIGR02651\"[5-304]TRNase_Z
noIPR
unintegrated
unintegrated
G3DSA:3.60.15.10\"[4-304]TG3DSA:3.60.15.10
PTHR12553\"[33-302]TPTHR12553
PTHR12553:SF6\"[33-302]TPTHR12553:SF6
SSF56281\"[4-257]TSSF56281


","BeTs to 13 clades of COG1234COG name: Metal-dependent hydrolases of the beta-lactamase superfamily IIIFunctional Class: RThe phylogenetic pattern of COG1234 is Amtky-vceBR-----oLin-Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 209-279 are identical to a (PROTEIN HYDROLASE CONSERVED INTERGENIC) protein domain (PD003027) which is seen in YPGA_PORGI.Residues 172-208 are identical to a (HYPOTHETICAL 33.6 KD PROTEIN) protein domain (PD171634) which is seen in YPGA_PORGI.","","Thu Jun 14 13:20:10 MDT 2001","","Thu Jun 14 13:20:10 MDT 2001","Thu Jun 14 13:20:10 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:20:10 MDT 2001","Thu Jun 14 13:20:10 MDT 2001","","","Fri Jul 25 13:13:03 2008","Thu Jun 14 16:50:50 MDT 2001","Thu Jun 14 13:20:10 MDT 2001","Thu Apr 6 11:23:39 MDT 2000","Fri Jul 25 13:13:03 2008","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Thu Apr 6 11:23:39 MDT 2000","Fri Jul 25 13:13:03 2008","-49% similar to PDB:2CBN CRYSTAL STRUCTURE OF ZIPD FROM ESCHERICHIA COLI (E_value = 7.7E_39);-49% similar to PDB:1Y44 Crystal structure of RNase Z (E_value = 3.2E_37);-49% similar to PDB:2FK6 Crystal Structure of RNAse Z/tRNA(Thr) complex (E_value = 4.7E_36);","","","Residues 21 to 271 (E-value = 7.7e-11) place PG0667 in the Lactamase_B family which is described as Metallo-beta-lactamase superfamily (PF00753)","Thu Jun 14 13:20:10 MDT 2001","34540530","","","","","","1","","","PG0739" "PG0669","787977","788543","567","ATGAAAGAATGCGCATCGATCTGTAAACGCCTTTTCCGGCAGTCTTGTTTGCTCCTTACCCTTGCTGGCCTCCTGTATTCCTGCGGAACAGGCAAAAAAGCGACAAATATATCCGGCAAACCTCACCATACAACTACTACCGGCCATTCGCTCCGAACGGCGGAGGACATCGTTACCGACCTGATAGCCCGAGGCAAGAAACTGATAGGCAAACCCTACAGGTATCAGGGGCCATCGTCTTGGCCGATGGATTGCTCCGGCTACGTGGCCTACCTCTATTCCTGCTACGATATTCATATTCCACGCTCTTCATCGGCACTGTACAACTATACCATTCCCATACGCCATCCTCTACCGGGTGATCTGCTTTTCTTCCGTGGTAGCAAGAATCACAAAGGGACTATCGGCCATGTGGCACTGTTGATCGAAGTTTGCGATGACGAACTAATCATGCTACACAACACCAATAGCAGAGGTATTATCATCGAATCACTGCAACGAAGTTCGTACTTCAGCAAGCGTTACATCCGTGCCGGTCGTTTGCCTGAGATCCAAGCTCTCATGGAC","9.90","11.58","21166","MKECASICKRLFRQSCLLLTLAGLLYSCGTGKKATNISGKPHHTTTTGHSLRTAEDIVTDLIARGKKLIGKPYRYQGPSSWPMDCSGYVAYLYSCYDIHIPRSSSALYNYTIPIRHPLPGDLLFFRGSKNHKGTIGHVALLIEVCDDELIMLHNTNSRGIIIESLQRSSYFSKRYIRAGRLPEIQALMD","788223 788543 [Delay by 255 872 128 8]","TIGR ID: PG0740","conserved hypothetical protein (lipoprotein)","Cytoplasm","Residues 51-176 match identically to a previously sequenced P.gingivalis lipoprotein in GenBank (CAA65180). Gapped BLAST shows weak similarity to other proteins including 34% similarity to a murein hydrolase homolog (emb|CAB15603) in Bacillus subtilis, 31% similarity to a protein with cell wall lytic activity (dbj|BAB07390) in Bacillus halodurans and 31% similarity to a residues 267-379 of pXO2-08 (ref|NP_053163) in Bacillus anthracis.","
InterPro
IPR000064
Domain
NLP/P60
PF00877\"[70-180]TNLPC_P60
noIPR
unintegrated
unintegrated
PTHR21666\"[66-184]TPTHR21666
PTHR21666:SF1\"[66-184]TPTHR21666:SF1
PS51257\"[1-28]TPROKAR_LIPOPROTEIN


","BeTs to 5 clades of COG0791COG name: Cell wall-associated hydrolases (invasion-associated proteins)Functional Class: MThe phylogenetic pattern of COG0791 is -------cEBRHuj----in-Number of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","Residues 61-175 are identical to a (PROTEIN PRECURSOR SIGNAL P60 INVASION-ASSOCIATED) protein domain (PD001396) which is seen in Q51835_PORGI.","","Thu Jun 14 13:21:31 MDT 2001","","Thu Jun 14 13:21:31 MDT 2001","Thu Jun 14 13:21:31 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:21:31 MDT 2001","Thu Jun 14 13:21:31 MDT 2001","","","Thu Dec 21 11:27:04 MST 2000","Thu Jun 14 16:58:12 MDT 2001","Thu Dec 21 11:05:29 MST 2000","","Tue Apr 3 14:05:44 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG0669 share 43% identity with PG0651, another conserved hypothetical protein.","Thu Jun 14 16:58:12 MDT 2001","Tue Apr 3 14:05:44 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 70 to 180 (E-value = 1.5e-42) place PG0669 in the NLPC_P60 family which is described as NlpC/P60 family (PF00877)","Tue Apr 3 14:05:44 MDT 2001","34540531","Thu Dec 21 15:42:40 MST 2000","Rigg GP, Roberts IS, The molecular cloning, nucleotide sequence and expression of an antigenic determinant from Porphyromonas gingivalis, Arch Oral Biol 2000 Jan;45(1):41-52, PubMed: 10669091.","","Thu Dec 21 11:27:04 MST 2000","","1","","","PG0740" "PG0670","789407","788811","597","ATGAGGAAAATCATTAAGGGAAGAGAACCCGATGCCTGGCTGAAGTATAGATGTACGCCAGGAGCTGTATATCAAAGAAAACCTGCACTAGCGGATAGCCTTTTGTTAGAGCAGGGGTATGTTTGTGCCTATTGCGAGAAGCGTATAGATGTCCAAGACCTCAGAGTTGAGCATATAAAACCTCGTAGCCAATACCCTGCCCAGCAACTATCCTATAGCAATATGGTTGCATGTTGCAGTGGCCAGAGTCAGGGCTCCGCTCATTGCGATTGCTCCAAGAAGGATGAGGAGATTACACTTAATCTCTTTACCGACGCACTGTTTCTTAGCATCAGCTACAAGCATGACGGAACAATATCTAGTGCAAATAAGTCTTGGAATGATGATATAAATATCACGCTTAATTTGAATTGCCTTTCTCTCAAGGAGAATCGGAAACTTGCTCTAGAAGGTTTGCTAGAAATCATCAAAAAAGAAGACTATAGCCAAGGGGTATTGAAAAGGCTGAAAGCAAGATACGAGGCAAAAGACAAGGGTCATAAATTCGCAGAATACAGAGGAATTATCTTATACTACATAGACAAAAAGCTATCCCCC","8.80","7.58","22761","MRKIIKGREPDAWLKYRCTPGAVYQRKPALADSLLLEQGYVCAYCEKRIDVQDLRVEHIKPRSQYPAQQLSYSNMVACCSGQSQGSAHCDCSKKDEEITLNLFTDALFLSISYKHDGTISSANKSWNDDINITLNLNCLSLKENRKLALEGLLEIIKKEDYSQGVLKRLKARYEAKDKGHKFAEYRGIILYYIDKKLSP","789407 788811","TIGR ID: PG0741","conserved hypothetical protein","Cytoplasm, Periplasm","Residues 1-199 match identically all 199 aa of a previously sequenced P.gingivalis protein in GenBank (CAA65181).","
InterPro
IPR003615
Domain
HNH nuclease
SM00507\"[30-85]THNHc
InterPro
IPR013467
Family
Conserved hypothetical protein CHP02646
TIGR02646\"[10-151]TCHP02646


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 1-199 are 99% similar to a (RNHB & PGAA GENES) protein domain (PD107481) which is seen in Q51836_PORGI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Dec 21 15:40:53 MST 2000","Thu Dec 21 15:40:53 MST 2000","Thu Dec 21 15:40:53 MST 2000","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis and gapped BLAST shows weak similarity (30%) to two Vibrio cholerae hypothetical proteins (emb|CAB54593,gb|AAF95530).","Thu Dec 21 15:51:55 2000","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540532","Thu Dec 21 15:41:23 MST 2000","Rigg GP, Roberts IS, The molecular cloning, nucleotide sequence and expression of an antigenic determinant from Porphyromonas gingivalis, Arch Oral Biol 2000 Jan;45(1):41-52, PubMed: 10669091.","","Thu Dec 21 15:51:55 2000","","1","","","PG0741" "PG0671","790728","789394","1335","ATGATTAGTAGAATTCACATCGAAGAGTTTAGAGATATTGGTGACTTGGAGCTATTTTTTCTGCCAGGAGTCAACCTTTTAATAGGCGACAATGGCAGTGGGAAAACGTCTGTTCTTAAGGCTTGTCAGTATGTCCTAGGCACATTCTTTTGTGGTTTCAAGATGGATCACACACCTACATGGACACAGTTGACCCCCGAAGCTAAGGATTTTCGCAGACGAGTTTCATCCGATGGAGATGAACTTATGAAGCACCCCATCAAGTTTAATTTTGATCTTAGATATGAGGAAAACGGTCAAAATCCAATCGAGTTAACCGATCAAATCCTGACCAAAAGGAATACACTGGGGAGAGCACTGACGACGACATTCCAAGACCATCAGGACTATACCAAAGGGCTACTAGAGGGGTATGCAACAGATGAGGGGAGGTACAGGCCATTGCCCGTATTTGTATTCTATTCGGTAGAAGACATTCACACCAAACGCAAGGTGAGCCATTCACTATTCCAGAAATACCGACACATGGCCAGTTTCGGTTATTATCATGCGCTTACCGAGAATGCTTTCTTGGACTTTTGGATCAAAAGGATGCTTATCCTTCGGGAAGAAGAGCAAGCAGGGAATCACGAATTAGCGGTGGTCAGGGGAGCCCTGCTCAGTGCACTAGGTACAGATGGAGCAGGTGTATTGCAGGACTTGAGCATTAGGATCAACAAGAAGGCTGTGTACTGGAAACTCCTAGATGGTAGGGAGATAAGTTCGGAGCATCTACCCGATGGGTTACGCCGAGTGATCAGCATAGTCGTAGATTTGGCTTTCAGATGCGCCTTGCTCAATCAGACTTTATATCAATCTGATTCAGCTCTCAAGTCCGAGGGGACAGTACTCATCGATGAAATAGACCTTCATCTACACCCTCGCCTGCAAGCATCAATTCTCAAGGGACTTCGTAAGGCATTCCCCAGGCTCCAGTTTATCATTACGTCTCACGCTCCTATGGTGATGTCAAGTGTTGATGCAGATGACAAATACAACATTGTGTACAAAATGAGCTATAATCAAGAGATGTCTCAATATGAAGCATTGAAGCAATCTACCTATGGTCTCGACGTGTCTACCATCATGCGTATGATACTAGGTTTGGCTCCAAGAGATAAGCAAGTTGACGAGCGACTAACGCATCTCTTCGATCTGATAGATCTAGAGAAGTACTCGGAGGCAACCATTGCACTTCAATCACTTCAAGATCAATTTGACGACTCTCTACCAGAGCTGTCAAAAGCCTCTGTGATGTTGCATTTCCTAAGCTCGGAGCAGAATGAGGAAAATCAT","6.10","-8.25","50988","MISRIHIEEFRDIGDLELFFLPGVNLLIGDNGSGKTSVLKACQYVLGTFFCGFKMDHTPTWTQLTPEAKDFRRRVSSDGDELMKHPIKFNFDLRYEENGQNPIELTDQILTKRNTLGRALTTTFQDHQDYTKGLLEGYATDEGRYRPLPVFVFYSVEDIHTKRKVSHSLFQKYRHMASFGYYHALTENAFLDFWIKRMLILREEEQAGNHELAVVRGALLSALGTDGAGVLQDLSIRINKKAVYWKLLDGREISSEHLPDGLRRVISIVVDLAFRCALLNQTLYQSDSALKSEGTVLIDEIDLHLHPRLQASILKGLRKAFPRLQFIITSHAPMVMSSVDADDKYNIVYKMSYNQEMSQYEALKQSTYGLDVSTIMRMILGLAPRDKQVDERLTHLFDLIDLEKYSEATIALQSLQDQFDDSLPELSKASVMLHFLSSEQNEENH","790728 789394","TIGR ID: PG0742. Reported by Chen et al., 2004, to be highly divergent in ATCC 33277.","conserved hypothetical protein/possible ABC-related ATP binding protein","Cytoplasm","All 445 aa are identical to a previously sequenced P.gingivalis gene, pgaA (embCAA65182). Gapped BLAST shows weak similarity of residues 252-339 to residues 274-367 of a putative ATP binding protein SugR (gbAAD16951) in Salmonella typhimurium and to residues 6-106 of a putative ATP binding protein (embCAB54592) in Vibrio cholerae.","
InterPro
IPR003395
Domain
SMC protein, N-terminal
PF02463\"[1-359]TSMC_N
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[1-47]TG3DSA:3.40.50.300
SSF52540\"[2-337]TSSF52540


","BeTs to 3 clades of COG0419COG name: ATPase involved in DNA repairFunctional Class: LThe phylogenetic pattern of COG0419 is amtkyqvceb------ol---Number of proteins in this genome belonging to this COG is 1","***** IPB001238 (RecF protein) with a combined E-value of 1.1e-09. IPB001238A 10-48","Residues 344-445 are identical to a (RNHB & PGAA GENES) protein domain (PD137160) which is seen in Q51837_PORGI.Residues 48-252 are identical to a (RNHB & PGAA GENES) protein domain (PD137161) which is seen in Q51837_PORGI.Residues 1-47 are identical to a (PROTEIN ATP-BINDING DNA REPAIR CHROMOSOME COILED COIL) protein domain (PD000596) which is seen in Q51837_PORGI.Residues 253-343 are identical to a (& ATP BINDING PROTEIN PUTATIVE SUGR RNHB PGAA GENES ORFS) protein domain (PD041945) which is seen in Q51837_PORGI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Tue Feb 22 13:59:59 2005","Sun Jun 3 15:02:01 MDT 2001","Tue Feb 22 13:59:59 2005","Thu Dec 21 15:51:12 2000","Sun Jun 3 15:02:01 MDT 2001","Sun Jun 3 15:02:01 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 22 13:59:59 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Sun Jun 3 15:02:01 MDT 2001","34540533","Thu Dec 21 16:02:17 2000","Rigg GP, Roberts IS, The molecular cloning, nucleotide sequence and expression of an antigenic determinant from Porphyromonas gingivalis, Arch Oral Biol 2000 Jan;45(1):41-52, PubMed: 10669091.Chen T, Hosogi Y, Nishikawa K, Abbey K, Fleischmann RD, Walling J, Duncan MJ.Comparative whole-genome analysis of virulent and avirulent strains of Porphyromonas gingivalis.J Bacteriol. 2004 Aug;186(16):5473-9.PMID: 15292149","","Tue Feb 22 13:59:59 2005","","1","","","PG0742" "PG0672","791988","791227","762","ATGCTTTCTGCCAATCAGATAAAATTCTTGCGAAGCCTGCGCGAACGAAAATATCGTTTGCGAGAGCAAGCTTTCGCAGTGGAAGGGCCTAAGCTCGTCGGCGAGATGCTGCCTTTCTATCGCTGTCGTATGCTTGTCGGCACGGCTGCCATGCTAAGAGCGGTAAGCACACCGCATGATGCCGAAGTGGTGGAGCTACCCGAATCCTTCGACTTCAAGCGCATCAGTACGCAGACCACTCCGCAGCCACTAATGGCCGTTTTCGATCTGCCTGCAGAGCCAGAGCCGGTAGTGGAAGGGCTGACGCTGCTCTTGGATGGGGTGCAAGATCCGGGCAACGTGGGGACCATCCTACGAACAGCCGACTGGTTCGGTATCCGTCATGTGTGGCTGGGGACAGGTTCAGCCGATGTCTTTTCTCCCAAAGTCGTACAGGCCTCTATGGGAGCATTGGCACGAGTACAGCCGACCCCCCTTAAGAACACGGTCGACACACTGGCTTATTTTCGTCGGCAGGGAATACCCGTTTACGGAGCTTTTCTGGATGGTCAAAGCCTATACGAAGCCCCCTTGCCGAACTTTACCGAACCTGCCATACTCGTCTTGGGCAGTGAGGGGCGCGGCATCAGTCCTGAAGTTGCGGCGGAGATTACCGACAGACTTACGATACCGGCTTCCGGTTTGTCAGTGAAAGGGCATACCGAATCGCTCAATGTTGCTATTGCCACAGCCATTTTGTGCTCCGAATGGAGGCGTCGCAGC","6.80","-0.36","27791","MLSANQIKFLRSLRERKYRLREQAFAVEGPKLVGEMLPFYRCRMLVGTAAMLRAVSTPHDAEVVELPESFDFKRISTQTTPQPLMAVFDLPAEPEPVVEGLTLLLDGVQDPGNVGTILRTADWFGIRHVWLGTGSADVFSPKVVQASMGALARVQPTPLKNTVDTLAYFRRQGIPVYGAFLDGQSLYEAPLPNFTEPAILVLGSEGRGISPEVAAEITDRLTIPASGLSVKGHTESLNVAIATAILCSEWRRRS","791988 791227","TIGR ID: PG0744","rRNA methylase; RNA methyltransferase","Cytoplasm","Gapped BLAST shows significant aimilarities to many rRNA methylases including 37% similarity to RNA methyltransferase (gb|AAF93967) in Vibrio cholerae, 35% similarity to rRNA methylase (dbj|BAB06831) in Bacillus halodurans and 31% similarity to rRNA methylase homolog (emb|CAB14825) in Bacillus subtilis.","
InterPro
IPR001537
Domain
tRNA/rRNA methyltransferase, SpoU
PD001243\"[99-240]TSpoU_mtfrase
PF00588\"[100-248]TSpoU_methylase
noIPR
unintegrated
unintegrated
G3DSA:3.30.1330.30\"[2-92]TG3DSA:3.30.1330.30
G3DSA:3.40.1280.10\"[95-254]TG3DSA:3.40.1280.10
PTHR12029\"[62-254]TPTHR12029
PTHR12029:SF8\"[62-254]TPTHR12029:SF8
SSF55315\"[5-92]TSSF55315
SSF75217\"[83-254]TSSF75217


","BeTs to 14 clades of COG0566COG name: rRNA methylasesFunctional Class: JThe phylogenetic pattern of COG0566 is a---YQvCEBRHujgpOLinxNumber of proteins in this genome belonging to this COG is 3","***** PF00588 (SpoU rRNA Methylase family) with a combined E-value of 3.2e-16. PF00588A 103-121 PF00588B 228-253","Residues 101-253 are 37% similar to a (PROTEIN METHYLTRANSFERASE TRANSFERASE TRNA/RRNA RRNA) protein domain (PD001243) which is seen in YG73_SYNY3.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Dec 21 16:21:33 2000","Thu Dec 21 16:21:33 2000","Thu Dec 21 16:21:33 2000","Wed May 2 11:44:43 MDT 2001","Wed May 2 11:44:43 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P.gingivalis.","Thu Dec 21 16:21:33 2000","Wed May 2 11:44:43 MDT 2001","-100% similar to PDB:2I6D The structure of a putative RNA methyltransferase of the TrmH family from Porphyromonas gingivalis. (E_value = 2.6E_143);-48% similar to PDB:1IPA CRYSTAL STRUCTURE OF RNA 2'-O RIBOSE METHYLTRANSFERASE (E_value = 3.5E_15);-48% similar to PDB:1X7O Crystal structure of the SpoU Methyltransferase AviRb from Streptomyces viridochromogenes (E_value = 4.7E_12);-48% similar to PDB:1X7P Crystal structure of the SpoU Methyltransferase AviRb from Streptomyces viridochromogenes in complex with the cofactor AdoMet (E_value = 4.7E_12);-52% similar to PDB:1ZJR Crystal Structure of A. aeolicus TrmH/SpoU tRNA modifying enzyme (E_value = 5.8E_10);","","","Residues 100 to 248 (E-value = 4.4e-23) place PG0672 in the SpoU_methylase family which is described as SpoU rRNA Methylase family (PF00588)","Wed May 2 11:44:43 MDT 2001","34540534","","","","","","1","","","PG0744" "PG0673","792471","792076","396","ATGGACAATCAGAAAAGACCTTTTACGACGCGTTTCGATCATTATAACTACAACGTCCTCAACCTGGAGCGTAGCCTGGCTTTCTATGACCGCGCTTTCGGCTTTCGCGAAGTGAAGCGCAAGGAAGCGGCCGATGGCTCGTTTATCCTCGTTTATCTGGGCGATGTGTACGGGCATTTTCTTTTGGAGCTGACTTGGCTCAGAGATCGGAAGGAACCTTACAACTTGGGAGAGAATGAGGTTCACCTCTGTGTCCGGACTACGGGCGACTATGATGCCGTACGCGAATATCACCGTGCCATGGGCTGTATCTGCTATGAGAATGAGCAGATGGGGCTCTACTTCGTGAACGATCCGGACGGCTATTGGATCGAGGTGCTGCCGGAGAATCGGGAT","4.90","-6.18","15794","MDNQKRPFTTRFDHYNYNVLNLERSLAFYDRAFGFREVKRKEAADGSFILVYLGDVYGHFLLELTWLRDRKEPYNLGENEVHLCVRTTGDYDAVREYHRAMGCICYENEQMGLYFVNDPDGYWIEVLPENRD","792471 792076","TIGR ID: PG0745","probable lactoylglutathione lyase","Cytoplasm","Gapped BLAST shows significant similarities to several lactoylglutathione lyase proteins including 35% similarity to lguL in Neisseria meningitidis (sp|O33393|LGUL_NEIMA) and 25%/20%/31% similarity to three lactoylglutathione lyase proteins in Pseudomonas aeruginosa (gb|AAG08496,gb|AAG06912,gb|AAG04099).","
InterPro
IPR004360
Domain
Glyoxalase/bleomycin resistance protein/dioxygenase
PF00903\"[11-126]TGlyoxalase
noIPR
unintegrated
unintegrated
G3DSA:3.10.180.10\"[11-130]TG3DSA:3.10.180.10
PTHR10374\"[7-131]TPTHR10374
SSF54593\"[3-126]TSSF54593


","BeTs to 4 clades of COG0346COG name: Lactoylglutathione lyaseFunctional Class: EThe phylogenetic pattern of COG0346 is A-tky--CEBRh---------Number of proteins in this genome belonging to this COG is 2","***** IPB000325 (Glyoxalase I) with a combined E-value of 5e-14. IPB000325A 14-52 IPB000325D 113-125","Residues 21-127 are 35% similar to a (GLYOXALASE I LYASE LACTOYLGLUTATHIONE METHYLGLYOXALASE) protein domain (PD002334) which is seen in LGUL_NEIME.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Jan 2 14:15:55 2001","Tue Jan 2 15:33:03 2001","Tue Jan 7 14:24:21 2003","Wed May 2 11:51:53 MDT 2001","Wed May 2 11:51:53 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed May 2 11:51:53 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 11 to 126 (E-value = 3.7e-08) place PG0673 in the Glyoxalase family which is described as Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily (PF00903)","Wed May 2 11:51:53 MDT 2001","34540535","","","","","","1","","","PG0745" "PG0674","793994","792630","1365","GTGATAGTGTGTAAAAACAGAATCGGCACGATGAAACGATTGGGCAGAATATCCCTACGCGTTTTGCTCCTGGCAGGAGTATTGCTCTCTCTATTGCTTATGGCGATGACTCTCCTATATCCTCCGGTAGAGAAAGGCGGGCTCTTCTTCATGCTGGCTATAGAGGTTGCTCTCCTCTTCTTTCTCGGTTTCCTATATAATAAGGTAGTATTGCCGATACGAGCCGTAGGCGATGGAATGGATATGCTCCGTTCACAGGACTATGCCACTACCCTTGCTCCTGTCGGTCAGCCGGATGCAGACCGGGTGGTCGAACTTTATAATGCGCTGATGCACAGCCTTAAGAAGGAGAGACTGAGACTGGAGGAAAGGGACAATTTCCTTTCGCTCGTGATGGATGTTTCGCCCGTGGGCTTCGTCGTTTTGGATTTCGACATGCGGGTTGTATCGGTCAATCCTGCCGCACGCAGGCTGTTGGACTTACCCGATGATTATATCCCGATCGAAAGACCGTTGGAAGAAGTATGCGCGAAGATCCCTTTCGGTCCGGACGAGCTGGGCGAAGGGGAATCCCGTACATGGCGATTGCCTACGGCCGAGGTGAGGAGGATTACGCGGATGAGATTCTTCGATCGTTCGTTCAGCCGTCTCTTTTTCAGTATCGAAACCCTGACCGAGGAGTTGCATTCGGCGGAGAAAGAAGCCTATGAAAAACTGATCAGGCTGATAGCCCATGAGGTCAATAACAGTACCGCCGGTATAATCGGTGTGCTAAATGCCGTGGGGGATGCTTTCGACGACACTCCTCATACTCCCGAAGGGGAAGTGTCCGAAGCCATCGCTCTCTGCCGCGACCGGTGTATGGCCATGAGTCGCTTTATCACACGATTTGCCGAAGTGGTCAAGCTACCTGATCCTACCCTATCTTCCGTAGACTTGGTACCGCTATGCGAGCGATGCATACTGCTGATGCAGCCTTTGGCTGTCGAAACGGGTGTGAAAATGAAGATGTGCAAAGAGCAAGATTCGTGCTTAGTCCGCTGCGATGCAGAGCAAATAGAGCAGGTGGTGATCAATCTGCTGCGCAACGCTATAGAGAGCTTTGCACAGCAAAATGATCTGGCTGTCTCGGCAACAAAGACGGTTCTGCTCTGTTTGGATCGTCACAATCTGCTCGTAGAGGATAATGGACAGCCTATCAGCGATGACGTTGCCACCCGTCTCTTTACACCATTCTTCAGCACCAAGCCGAATGGTCAGGGGATAGGCTTGGTCGTTATTCGCGAAGTACTGACTCGCCACGGCTGGTCCTTCTCCCTGACCACCGATGCCGACGGCCGCACTCGCTTCCGTATGGCGTGGCCT","5.30","-7.99","51109","VIVCKNRIGTMKRLGRISLRVLLLAGVLLSLLLMAMTLLYPPVEKGGLFFMLAIEVALLFFLGFLYNKVVLPIRAVGDGMDMLRSQDYATTLAPVGQPDADRVVELYNALMHSLKKERLRLEERDNFLSLVMDVSPVGFVVLDFDMRVVSVNPAARRLLDLPDDYIPIERPLEEVCAKIPFGPDELGEGESRTWRLPTAEVRRITRMRFFDRSFSRLFFSIETLTEELHSAEKEAYEKLIRLIAHEVNNSTAGIIGVLNAVGDAFDDTPHTPEGEVSEAIALCRDRCMAMSRFITRFAEVVKLPDPTLSSVDLVPLCERCILLMQPLAVETGVKMKMCKEQDSCLVRCDAEQIEQVVINLLRNAIESFAQQNDLAVSATKTVLLCLDRHNLLVEDNGQPISDDVATRLFTPFFSTKPNGQGIGLVVIREVLTRHGWSFSLTTDADGRTRFRMAWP","793994 792630","TIGR ID: PG0746","probable sensory transduction histidine kinase","Inner membrane, Cytoplasm","Gapped BLAST shows significant similarity to many signal and nitrogen regulation proteins including 25% similarity to a hydH in Salmonella typhimurium (gb|AAF33505), 28% similarity to a sensor fixl protein in Bradyrhizobium japonicum (sp|P23222|FIXL_BRAJA) and 21% similarity to a two-component sensor histidine kinase in Bacillus halodurans (dbj|BAB05521","
InterPro
IPR000014
Domain
PAS
SM00091\"[126-193]TPAS
InterPro
IPR003594
Domain
ATP-binding region, ATPase-like
G3DSA:3.30.565.10\"[304-455]Tno description
PF02518\"[348-455]THATPase_c
SM00387\"[348-455]THATPase_c
InterPro
IPR003660
Domain
Histidine kinase, HAMP region
PF00672\"[48-116]THAMP
InterPro
IPR004358
Domain
Histidine kinase related protein, C-terminal
PR00344\"[389-403]T\"[407-417]T\"[418-436]TBCTRLSENSOR
InterPro
IPR005467
Domain
Histidine kinase
PS50109\"[242-455]THIS_KIN
noIPR
unintegrated
unintegrated
PTHR23283\"[113-455]TSENSOR HISTIDINE KINASE-RELATED
PTHR23283:SF24\"[113-455]TTWO COMPONENT HISTIDINE KINASE (SPORULATION KINASE)
signalp\"[1-37]?signal-peptide
tmhmm\"[21-43]?\"[49-71]?transmembrane_regions


","BeTs to 11 clades of COG0642COG name: Sensory transduction histidine kinasesFunctional Class: TThe phylogenetic pattern of COG0642 is AMT-YQVCEBRHUJ--O-inXNumber of proteins in this genome belonging to this COG is 6","No significant hit to the Blocks database.","Residues 345-455 are 37% similar to a (KINASE PROTEIN SENSORY TRANSDUCTION HISTIDINE SENSOR) protein domain (PD000064) which is seen in FIXL_BRAJA.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Jan 2 14:31:55 2001","Tue Jan 2 14:36:05 2001","Tue Jan 2 14:31:55 2001","","Wed May 2 11:55:42 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 80-455 are 25% similar to PG0014 a two-component sensor histidine kinase.","Tue Jan 2 14:31:55 2001","Wed May 2 11:55:42 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 348 to 454 (E-value = 2.1e-16) place PG0674 in the HATPase_c family which is described as Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (PF02518)","Wed May 2 11:55:42 MDT 2001","34540536","","","","","","1","","","PG0746" "PG0675","795385","793994","1392","ATGGAAAAACTGATCGATATTTTGGTCGTAGACGATGATGTGGCAGTCTGTGCCGCACTGCGTCTGGTGCTCAAGCGAGCGGGCTATAATCCCGTTATAGCCAACAGTCCCGACGAAGCTTTGTCCATAATGCGGAATCCTGATGGCGGCTGTAAGCCGGCTGTGATTCTGATGGATATGAATTTCTCCCTTTCGACCTCCGGCAGGGAAGGATTGGAACTACTGGAGAAGATGCAGATATTCACTTCCTGCCCTGTCATACTGATGACGGCTTGGGCTTCGATTCCACTGGCAGTGGAGGGAATGAGGCTTGGAGCTTTCGACTTCATAGGCAAGCCATGGGACAACGATCGGCTCCTTCGTACCATAGATACGGCCTTGCATCTGGCTGCTCCCTCAGCTGTGGCGAATCCATCGGAACAGTCTGACAGAGATACAGCCCGTCAGCCGAAAGCTACAGTCCAAGAGAATGACCCCTGTGCCCATATCATAGGCCGGAGCGATGCCATCTGTAAGATCAAGGAACGGATACGCCGCATAGCTCCCACCCATGCCTCTGTGCTGATCACGGGCGAGAGCGGTACGGGCAAAGAGTTGATAGCCGAAGCTCTGCACCGTGGGAGCAAACGAGCCTCAGCCCCATTCGTCAAGGTCAATTTGGGTGGGATTCCCGAAAGTTTGTTCGAAAGTGAGCTGTTCGGACATAAGAAAGGAGCTTTTACCAATGCTTTTTCCGACAGGAAAGGACGGTTCGAGCTGGCTGATGGCGGCACGATCTTTCTGGACGAAATAGGCGAACTACCGGTCGGCAACCAAGTAAAACTGCTGCGAGTGCTACAGGAACAGACATTCGAGCCGTTGGGCGAGAGCGTCTCCCACCGAGTGGACATCCGTGTGGTATCGGCTACGAATGCTTCCTTGGAGCGAATGGTAGCCGAAGGACGTTTCAGAGAGGACCTCTACTATCGAATCAACCTGATACATCTGCATCTGCCTCCGCTGCGTGAGCGTCAGGAGGATATACAGCTGCTGGTGGAAGCCTTCAGTGAAGCCTTTGCCCAATCGAACGGATTGCCCCATGCCGTTTGGAGTGCGGAAGCTATGCGACGTATCTGTGCCATGCCCCTACCGGGCAATGTACGCGAACTGAAAAACGTAGTGGAGCGTACGCTATTGCTCTCGGGATCGAGAGAAATCAGTGCCCGGGATGTGGCTGACTTCGGTTCGCAGGTGACGGCAGCAGACCACTCCGACGAACGGGCTTTGACCGACATGGAGGAAGCTGCTATCCGAGAGACGCTGACTAAATACAACGGCAACGTTAGTCGTGCTGCACGAGCCTTGGGATTGAGCCGGGCAGCTCTTTACCGGCGAATGGAGAAATACGGACTG","6.40","-3.83","51036","MEKLIDILVVDDDVAVCAALRLVLKRAGYNPVIANSPDEALSIMRNPDGGCKPAVILMDMNFSLSTSGREGLELLEKMQIFTSCPVILMTAWASIPLAVEGMRLGAFDFIGKPWDNDRLLRTIDTALHLAAPSAVANPSEQSDRDTARQPKATVQENDPCAHIIGRSDAICKIKERIRRIAPTHASVLITGESGTGKELIAEALHRGSKRASAPFVKVNLGGIPESLFESELFGHKKGAFTNAFSDRKGRFELADGGTIFLDEIGELPVGNQVKLLRVLQEQTFEPLGESVSHRVDIRVVSATNASLERMVAEGRFREDLYYRINLIHLHLPPLRERQEDIQLLVEAFSEAFAQSNGLPHAVWSAEAMRRICAMPLPGNVRELKNVVERTLLLSGSREISARDVADFGSQVTAADHSDERALTDMEEAAIRETLTKYNGNVSRAARALGLSRAALYRRMEKYGL","795403 793994","TIGR ID: PG0747","two-component sensor system regulatory subunit (ATOC-like, NTRC-like) (acetoacetate metabolism regulatory protein) (ornithine/arginine decarboxylase inhibitor) (ornithine decarboxylase antizyme)","Cytoplasm","Gapped BLAST shows many significant similatrities including 41% similarity to a acetoacetate metabolism regulatory protein in E.coli (gb|AAC75280), a 37% similarity to a response regulatory protein in Borrelia burgdorferi (gb|AAC67116.1) and 40% similarity to nifA in Alcaligenes faecalis (gb|AAD38416.1)/This sequence is similar to BT1529.","
InterPro
IPR001789
Domain
Response regulator receiver
PD000039\"[28-127]TResponse_reg
PF00072\"[5-124]TResponse_reg
SM00448\"[5-123]TREC
PS50110\"[6-127]TRESPONSE_REGULATORY
InterPro
IPR002078
Domain
RNA polymerase sigma factor 54, interaction
PF00158\"[163-384]TSigma54_activat
PS00675\"[187-200]TSIGMA54_INTERACT_1
PS00676\"[249-264]TSIGMA54_INTERACT_2
PS50045\"[163-392]TSIGMA54_INTERACT_4
InterPro
IPR002197
Domain
Helix-turn-helix, Fis-type
PR01590\"[428-445]T\"[445-464]THTHFIS
PF02954\"[422-462]THTH_8
InterPro
IPR003593
Domain
AAA+ ATPase, core
SM00382\"[183-326]TAAA
InterPro
IPR009057
Domain
Homeodomain-like
SSF46689\"[406-464]THomeodomain_like
InterPro
IPR011006
Domain
CheY-like
SSF52172\"[5-208]TCheY_like
noIPR
unintegrated
unintegrated
G3DSA:1.10.1680.10\"[419-464]TG3DSA:1.10.1680.10
G3DSA:1.10.8.60\"[336-404]TG3DSA:1.10.8.60
G3DSA:3.40.50.2300\"[7-131]TG3DSA:3.40.50.2300
G3DSA:3.40.50.300\"[161-335]TG3DSA:3.40.50.300
PTHR23283\"[7-131]TPTHR23283
PTHR23283:SF47\"[7-131]TPTHR23283:SF47
SSF52540\"[162-407]TSSF52540


","BeTs to 6 clades of COG2204COG name: AAA superfamily ATPases with N-terminal receiver domainFunctional Class: TThe phylogenetic pattern of COG2204 is -----Q--E---uj--olinxNumber of proteins in this genome belonging to this COG is 2","***** IPB002078 (Sigma-54 transcription factor family) with a combined E-value of 1.1e-74. IPB002078A 187-221 IPB002078B 240-289 IPB002078C 314-341 IPB002078D 376-385","Residues 28-127 are 37% similar to a (PROTEIN SENSORY TRANSDUCTION PHOSPHORYLATION REGULATOR) protein domain (PD000039) which is seen in O07050_AERHY.Residues 163-388 are 27% similar to a (PHOSPHOGLYCERATE TRANSPORT SYSTEM) protein domain (PD087393) which is seen in PGTA_SALTY.Residues 163-400 are 28% similar to a (NITROGEN ASSIMILATION REGULATORY PROTEIN) protein domain (PD082887) which is seen in P74210_SYNY3.Residues 163-404 are 51% similar to a (PROTEIN ATP-BINDING PROTEASE SUBUNIT REGULATORY HOMOLOG) protein domain (PD000092) which is seen in O66591_AQUAE.","","Thu Jun 14 13:22:14 MDT 2001","","Thu Jun 14 13:22:14 MDT 2001","Thu Jun 14 13:22:14 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:22:14 MDT 2001","Thu Jun 14 13:22:14 MDT 2001","","","Fri Mar 23 12:08:22 MST 2001","Thu Dec 4 15:42:59 2003","Tue Jan 2 14:37:50 2001","Thu Dec 4 15:42:59 2003","Thu Dec 4 15:42:59 2003","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1-464 are 42% similar to PG0013 and residues 144-435 are 41% similar to PG0136, both predicted nitrogen assimilation regulatory proteins.","Thu Jun 14 17:00:15 MDT 2001","Wed Mar 14 13:23:47 MST 2001","-61% similar to PDB:1NY5 Crystal structure of sigm54 activator (AAA+ ATPase) in the inactive state (E_value = 2.0E_63);-63% similar to PDB:1OJL CRYSTAL STRUCTURE OF A SIGMA54-ACTIVATOR SUGGESTS THE MECHANISM FOR THE CONFORMATIONAL SWITCH NECESSARY FOR SIGMA54 BINDING (E_value = 2.3E_59);-68% similar to PDB:1NY6 Crystal structure of sigm54 activator (AAA+ ATPase) in the active state (E_value = 1.8E_56);-61% similar to PDB:2BJW PSPF AAA DOMAIN (E_value = 4.8E_49);-61% similar to PDB:2C96 STRUCTURAL BASIS OF THE NUCLEOTIDE DRIVEN CONFORMATIONAL CHANGES IN THE AAA DOMAIN OF TRANSCRIPTION ACTIVATOR PSPF (E_value = 4.8E_49);","","","Residues 5 to 131 (E-value = 1.2e-21) place PG0675 in the Response_reg family which is described as Response regulator receiver domain (PF00072)Residues 163 to 384 (E-value = 2.9e-125) place PG0675 in the Sigma54_activat family which is described as Sigma-54 interaction domain (PF00158)Residues 422 to 462 (E-value = 7e-15) place PG0675 in the HTH_8 family which is described as Bacterial regulatory protein, Fis family (PF02954)","Thu Dec 4 15:42:59 2003","34540537","","","","","","1","","","PG0747" "PG0676","796783","796040","744","ATGGAAGAGAACAAACCTGTTTTTTCGATCATTACAGTTTGCTATTGTGCAAGGGATATTATCGCCAAAACAGCCCACAGCGTACTTTCCCAAACATACCCTAATATAGAGTACATTGTTGTCGATGGAGCTTCTCCCGACAATACAGCCGAAGTGGTACGTTCGTTGTCTTCTGATATCAGACTGATCAGCGAACCGGACAAAGGGCTATACGATGCTATGAATAAGGGCCTGCGTATGGCTTTGGGCGACTATGTTTGGTTTCTGAATGCCGGCGACCTTCTGCCATCCGATGATCTTGTCGAGGCGATAGCCAACGGCATTAAAAGCTCTCCAATGGGATTACCGGATGTCCTTTACGGCGATACCATGCTGATTGATGCCACCGGTAAGGAGAAGGGTTTACGACGGCTTCGTCCTCCTTTCGAACTCCAATGGAGAAGTTTTGCGGATGGTATGTTGGTATGCCATCAGGCTTTTATTGCAAAGCGATTGATAGCACCGCCGTACAACATGAAATACCGATTTTCAGCTGATTTCGATTGGTGTATTCGTATTCTTCAAGCTGCTCGCAATATCGTCAATACAGAAATGATTCTGGTGCACTCTTTGGATGATAGGGGGGGGATAACTTACAAAAATCATAAGGCTTCTCTCAAAGAGAGATTTTTGATCATGAAGCATTACTACGGGAGCAGGAAGTCGATTATGAAGCATCTGAGCTTCTTTTTCCGCCGCAAGCGC","9.50","7.25","28264","MEENKPVFSIITVCYCARDIIAKTAHSVLSQTYPNIEYIVVDGASPDNTAEVVRSLSSDIRLISEPDKGLYDAMNKGLRMALGDYVWFLNAGDLLPSDDLVEAIANGIKSSPMGLPDVLYGDTMLIDATGKEKGLRRLRPPFELQWRSFADGMLVCHQAFIAKRLIAPPYNMKYRFSADFDWCIRILQAARNIVNTEMILVHSLDDRGGITYKNHKASLKERFLIMKHYYGSRKSIMKHLSFFFRRKR","796846 796040","TIGR ID: PG0750","glycosyltransferase","Cytoplasm","Gapped BLAST shows many significant similarities to putative glycosyl transferases including 34% similarity to two proteins in Salmonella enterica I (gb|AAG41748 and gb|AAG41745) 34% similarity to a putative glycosyl transferase in E.coli (>gb|AAG41752) and 33% similarity to one in Bacteroides fragilis (gb|AAD40722).","
InterPro
IPR001173
Domain
Glycosyl transferase, family 2
PF00535\"[9-105]TGlycos_transf_2
noIPR
unintegrated
unintegrated
G3DSA:3.90.550.10\"[6-245]TG3DSA:3.90.550.10
PTHR22916\"[14-248]TPTHR22916
SSF53448\"[6-245]TSSF53448


","BeTs to 11 clades of COG0463COG name: Glycosyltransferases involved in cell wall biogenesisFunctional Class: MThe phylogenetic pattern of COG0463 is AMTKYQVCEBRHujGPo---XNumber of proteins in this genome belonging to this COG is 8","No significant hit to the Blocks database.","Residues 9-75 are 50% similar to a (PROTEIN TRANSFERASE GLYCOSYLTRANSFERASE PUTATIVE) protein domain (PD000196) which is seen in Q9ZMX1_BBBBB.","","Thu Jun 14 13:23:10 MDT 2001","","Thu Jun 14 13:23:10 MDT 2001","Thu Jun 14 13:23:10 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:23:10 MDT 2001","Thu Jun 14 13:23:10 MDT 2001","","","Wed May 2 12:01:30 MDT 2001","Tue Jan 2 15:22:24 2001","Tue Jan 2 15:22:24 2001","","Tue Apr 3 14:26:32 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 6-100 share 32% identity to PG0103, glycosyl transferase.Residues 1-193 share 28% identity with PG1637, probable beta 1,3-glucosyl transferase.","Fri Jun 15 08:12:20 MDT 2001","Tue Apr 3 14:26:32 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 9 to 167 (E-value = 1.7e-25) place PG0676 in the Glycos_transf_2 family which is described as Glycosyl transferase (PF00535)","Tue Apr 3 14:26:32 MDT 2001","34540539","","","","","","1","","","PG0750" "PG0677","797669","796938","732","ATGCAATTCTTATATAATTCACGTTTTTCGTTGAGAGTCGCTCTCTTTTGCCTGATTTGTGCCTGGGCCGGACGTACGCTGTCGGCGCAAACGGAAAAAGTACAAAATCGCCCCTACGCCGACTACAAACGCTATCATCTTGGATTCCATGTAGGGATGCATGCCCAGGATTTGGTTATCTCCAACAACGGGTTTGTACCCGAAGGGAGTACGTCGACTCCGATTTATGCTCAGATTTCTAAATATTCGCCCGGATTTTCCGTTGGCGTGATCGGTGATATGTTCCTTCTGCCCAATCTGAATTTACGTTTGCTTCCGACTTTGCACTTCGGAGACAAGCAGTTTGTCTTTTCCGATGGGGAGAAACCCGTGGCCTCTTTCTCCGTTCGATCCAATTATTTGGAATTTCCGCTATTATTGAAATATGGTTCTCGGCGCCTGAACAATATGCGTCCATACCTCATCGGCGGGCCTTACTGGACTATGGAGCTGGGGCGAAAGAAGGGGTTGGAGATTTATACCAAAGCGAACGATTACGGGGTGCAGATCGGTCTCGGATGCGATTTTTACCTGCCTTTTTTCAAATTGTGCCCCGAACTGCGCTTTAGCTTTGGTTTTCCCGATGTTATCACACACGAGCGTCCTGATCTTTTGGATGATTATAAGTTGATCTATACCCAGTCTATCAGTCGGGCACGCACCCGAATGATTATGCTTACGTTCAATTTCGAG","9.80","8.01","28090","MQFLYNSRFSLRVALFCLICAWAGRTLSAQTEKVQNRPYADYKRYHLGFHVGMHAQDLVISNNGFVPEGSTSTPIYAQISKYSPGFSVGVIGDMFLLPNLNLRLLPTLHFGDKQFVFSDGEKPVASFSVRSNYLEFPLLLKYGSRRLNNMRPYLIGGPYWTMELGRKKGLEIYTKANDYGVQIGLGCDFYLPFFKLCPELRFSFGFPDVITHERPDLLDDYKLIYTQSISRARTRMIMLTFNFE","797669 796938","TIGR ID: PG0751","porT protein","Outer membrane, Cytoplasm","This sequence corresponds to gi:34396853 in Genbank.","
noIPR
unintegrated
unintegrated
signalp\"[1-28]?signal-peptide
tmhmm\"[9-29]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 1-244 are 94% similar to a (PORT PROTEIN) protein domain (PD211851) which is seen in Q9ZNF9_PORGI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Mar 10 10:42:16 2005","Thu Mar 10 10:42:16 2005","Tue Jan 2 15:48:49 2001","","Fri Sep 10 15:55:47 2004","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Sep 10 15:55:47 2004","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540540","Tue Jan 2 15:48:49 2001","Sato K, Sakai E, Veith PD, Shoji M, Kikuchi Y, Yukitake H, Ohara N, Naito M, Okamoto K, Reynolds EC, Nakayama K.Identification of a New Membrane-associated Protein That Influences Transport/Maturation of Gingipains and Adhesins of Porphyromonas gingivalis.J Biol Chem. 2005 Mar;280(10):8668-77.PMID: 15634642","","Thu Mar 10 10:48:26 2005","","1","","","PG0751" "PG0678","797808","798455","648","ATGGAAGTAATACACTTAGGTGCCGAGCATTCTCTTCTCAATAGATTCGTCATGGAGATGCGCGATGTCACTATTCAGAACGATCGACTGCGCTTTCGTCGTAATATAGAACGTGTGGGAGAAGTAATGGCCTATGAGATCAGCAAGAAGATGACCCAACAGGTGCGTACCGTCACTACGCCCTTGGGTGAGGCCGAGTGCTCCGTACCCCAAGACAAAGTAGTGCTCGCTACGATCCTTCGAGCAGGACTGCCTTTCCATCATGGCTTCCTCAACTATTTCGACTATTGTGAAAATGCCTTTGTATCCGCCTACAGGAAGTATAAGGACCGCCTGAATTTCGACATCCACATCGAATACATAGCATCGCCGGACATCACAGACAAAGTCCTCATCATATCCGATCCCATGTTGGCCACAGGTAGCTCCATGGAACTGGCATACAAAGCGCTGCTGACCAAAGGCAATCCGAAACATATCCATATAGCCAGCATAATAGCCAGCCAGCAAGCCGTGGACTATATACGCGGTGTCATGCCGGACAATACTACAATATGGATTGCAGCCATCGACCCCACCATAGACGAGCATTCCTATATCGTACCGGGATTAGGTGACGCAGGCGATTTGGCCTATGGCGAAAAGCTT","6.10","-4.17","24356","MEVIHLGAEHSLLNRFVMEMRDVTIQNDRLRFRRNIERVGEVMAYEISKKMTQQVRTVTTPLGEAECSVPQDKVVLATILRAGLPFHHGFLNYFDYCENAFVSAYRKYKDRLNFDIHIEYIASPDITDKVLIISDPMLATGSSMELAYKALLTKGNPKHIHIASIIASQQAVDYIRGVMPDNTTIWIAAIDPTIDEHSYIVPGLGDAGDLAYGEKL","797808 798455","TIGR ID: PG0752","uracil phosphoribosyltransferase","Cytoplasm","This sequence corresponds to gi:4126502 in Genbank.Its nearest neighbor in the NR database is gi:29348200 from Bacteroides thetaiotaomicron VPI-5482.","
InterPro
IPR000836
Domain
Phosphoribosyltransferase
PF00156\"[27-176]TPribosyltran
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.2020\"[8-215]TG3DSA:3.40.50.2020
PTHR10285\"[1-214]TPTHR10285
PTHR10285:SF1\"[1-214]TPTHR10285:SF1
SSF53271\"[1-215]TSSF53271


","BeTs to 10 clades of COG0035COG name: Uracil phosphoribosyltransferaseFunctional Class: FThe phylogenetic pattern of COG0035 is --t-Yqvcebrh--gp-l---Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 182-213 are identical to a (TRANSFERASE URACIL) protein domain (PD003612) which is seen in Q9ZNF8_PORGI.Residues 9-106 are identical to a (TRANSFERASE URACIL) protein domain (PD003137) which is seen in Q9ZNF8_PORGI.Residues 124-173 are 74% similar to a (TRANSFERASE URACIL) protein domain (PD006108) which is seen in Q9ZNF8_PORGI.Residues 114-213 are 31% similar to a (URACIL PHOSPHORIBOSYLTRANSFERASE,) protein domain (PD183421) which is seen in O83462_TREPA.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Jan 2 15:59:23 2001","Thu Mar 10 11:06:12 2005","Tue Jan 2 15:59:23 2001","","Wed May 2 12:20:38 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 10 11:06:12 2005","-51% similar to PDB:1XTT Sulfolobus solfataricus uracil phosphoribosyltransferase in complex with uridine 5'-monophosphate (UMP) (E_value = 1.4E_22);-51% similar to PDB:1XTU Sulfolobus solfataricus uracil phosphoribosyltransferase in complex with uridine 5'-monophosphate (UMP) and cytidine 5'-triphosphate (CTP) (E_value = 1.4E_22);-51% similar to PDB:1XTV Sulfolobus solfataricus uracil phosphoribosyltransferase with uridine 5'-monophosphate (UMP) bound to half of the subunits (E_value = 1.4E_22);-46% similar to PDB:1V9S Crystal structure of TT0130 protein from Thermus thermophilus HB8 (E_value = 4.8E_20);-48% similar to PDB:1I5E CRYSTAL STRUCTURE OF BACILLUS CALDOLYTICUS URACIL PHOSPHORIBOSYLTRANSFERASE WITH BOUND UMP (E_value = 2.7E_18);","","","No significant hits to the Pfam 11.0 database","Wed May 2 12:20:38 MDT 2001","34540541","Tue Jan 2 15:59:50 2001","Sato K, Sakai E, Veith PD, Shoji M, Kikuchi Y, Yukitake H, Ohara N, Naito M, Okamoto K, Reynolds EC, Nakayama K.Identification of a New Membrane-associated Protein That Influences Transport/Maturation of Gingipains and Adhesins of Porphyromonas gingivalis.J Biol Chem. 2005 Mar;280(10):8668-77.PMID: 15634642","","Thu Mar 10 11:06:12 2005","","1","","","PG0752" "PG0679","798442","800346","1905","ATGGCGAAAAGCTTTGAGCCACGGCTTGTAGAACTGCTTGCTCCGGCCAAAGATCTTGCCACGGGTCAGGCGGCAATCCTCCACGGTGCCGATGCCGTGTATATCGGTGCTCCGTCTTTCGGTGCGCGAGCTTCGGCAGGAGTATCGATAGAGGATATAGGCAGGCTGGCACGCTTCGCACGACTCTATCGTGCCAAAGTATATGTAGCACTCAATACGATCCTGTATGACGATGAGCTTCCCGAGGCAGAACGCATCGCATGGGAGCTTTATCGGGCAGGAGCAGATGCCCTGATCGTACAGGACATGTCCCTATGTCGTCTGAACCTCCCACCTATAGCCCTCCATGCCAGTACACAATGCGACATCCGCACTGTGGAGAAAGTCCGGATGTTCGAGTCTCTGGGCTATGAGCAGGTGGTATTGGCCAGAGAGCTGTGCCTTCCCGAAATCCGCAAGATAGCCGACTCCACATCAGTGGTATTGGAAGCCTTTGTACATGGTGCACTCTGTGTGAGTCTGAGTGGGCAGTGCTACCTCTCCGAGGCACTAACCCGACGCAGTGCCAACCGAGGAGCTTGTGCCCAGCTCTGCAGACTGCCCTATACGATGATCGATGCCGATGGAAAGGTAATCCGAAGCAATCAGCATCTTCTTTCCTTGAAAGACTTGAATCGCTCTGCCGAATTGGAGTCGATGCTTGAGGCCGGCATCTCTTCATTCAAGATCGAAGGCCGACTCAAAGGTATCTCCTATGTCAAAAATGTAACGGCACACTATCGCCGTCTTTTGGACGAACTCATCAGCCGCTACCCCGAACGTTATTGTAGAGCTTCATCGGGACGCTGCACTTTCGCTTTCCATCCCGCCCCTGAAAAGAGCTTCAACCGTGGCTTCACTAATCTCCTTCTAAGTGGTAAGCGCGACACAAATACCCTCATCACACCCGAATCGAACAAAAGCAAAGGTGCCTATATCGGCTGCGTGACAGCTGTAAACCGCGACAAGGTCAGTATCCGGCTGCGACCCGATAATACGGGAGCCAAGCCCTCCCTGGCCAATGGCGATGGCCTTTACCTCCTGCACCCCGACGGCAACATGAGCGGTACGCGCATCAATGTGGTTTTACCCGACGGCAGCATACAAGTGGACAATCCTGCCGGCATCGTATCGGGAACAAACGTATTCCGCAATTACGACATCCGTTTCGAGAAAGCTCTCTCGCAAGACAACTCGGCCGTTCGCCTCATTCCCGTATCTCTTACCTTGACGGATGTTCCGGACGGCTTCTCTCTCTCGATAGAGGCCGACTGCTACCCATCTGCAAAGGCTACGATAACAGCTGCTCACGAGCCTGCCACACGGTTCGATGAAGAGCAGATCCGCAAGAATCTGACCAAATTAGGTGGTACACCGCTTGAAGCCGTATCAGTCGATATCCGGCTCAGTCACGACTATTTCATCCCGCTTTCTCTCATTGGCCGGTTAAGGAGAGATGCAGTCCAATCCTTCATCGAGAAAGCCTCCTCTATGCCTGAACGTGAGGAAAAACCGGTCGTACAACGTCGCATTTCTCCTGCGGCGAGCAGCTTGCAGGAGGGAGAGCAGAGCCTTTCCTTCTTAGCCAATGTGGCGAACAAGGAAGCAGAAACCTTCTATCGGCAAATGGGATATACATCTATCGCCCCCGCCTTCGAACACTCGCATCCCCAAGGCGTTCCGCTTATGTTTTCGAAGCACTGTCTCCGCTATCATTTGGGCTATTGCCCCACCCTCCAACACAAGGAATCGCCGTACAGAGAACCGTACTACCTGATTCATGGCGAAACTCGTCTGCGACTCCGATTCGACTGCCAACACTGTCAAATGCTGGTCTATCACGACTCCGAAGGAATCAAGCAGACC","7.90","7.43","70442","MAKSFEPRLVELLAPAKDLATGQAAILHGADAVYIGAPSFGARASAGVSIEDIGRLARFARLYRAKVYVALNTILYDDELPEAERIAWELYRAGADALIVQDMSLCRLNLPPIALHASTQCDIRTVEKVRMFESLGYEQVVLARELCLPEIRKIADSTSVVLEAFVHGALCVSLSGQCYLSEALTRRSANRGACAQLCRLPYTMIDADGKVIRSNQHLLSLKDLNRSAELESMLEAGISSFKIEGRLKGISYVKNVTAHYRRLLDELISRYPERYCRASSGRCTFAFHPAPEKSFNRGFTNLLLSGKRDTNTLITPESNKSKGAYIGCVTAVNRDKVSIRLRPDNTGAKPSLANGDGLYLLHPDGNMSGTRINVVLPDGSIQVDNPAGIVSGTNVFRNYDIRFEKALSQDNSAVRLIPVSLTLTDVPDGFSLSIEADCYPSAKATITAAHEPATRFDEEQIRKNLTKLGGTPLEAVSVDIRLSHDYFIPLSLIGRLRRDAVQSFIEKASSMPEREEKPVVQRRISPAASSLQEGEQSLSFLANVANKEAETFYRQMGYTSIAPAFEHSHPQGVPLMFSKHCLRYHLGYCPTLQHKESPYREPYYLIHGETRLRLRFDCQHCQMLVYHDSEGIKQT","798421 800346","TIGR ID: PG0753","prtQ protein","Cytoplasm","This sequence corresponds to gi:4126503 in Genbank.Its nearest neighbor in the NR database is gi:53711890 from Bacteroides fragilis YCH46.","
InterPro
IPR001539
Family
Peptidase U32
PD004398\"[96-261]TPeptidase_U32
PF01136\"[80-310]TPeptidase_U32
PS01276\"[163-181]TPEPTIDASE_U32
noIPR
unintegrated
unintegrated
SSF51412\"[24-65]TSSF51412


","BeTs to 6 clades of COG0826COG name: Protease related to collagenaseFunctional Class: OThe phylogenetic pattern of COG0826 is -MT--q--EB-huj-------Number of proteins in this genome belonging to this COG is 2","***** IPB001539 (Peptidase family U32) with a combined E-value of 8.6e-56. IPB001539A 11-36 IPB001539B 162-199 IPB001539C 240-265","Residues 352-625 are 98% similar to a (PROTEIN PRTQ PUTATIVE PROTEASE) protein domain (PD191569) which is seen in Q9ZNF7_PORGI.Residues 276-351 are 97% similar to a (PRTQ PROTEIN) protein domain (PD215572) which is seen in Q9ZNF7_PORGI.Residues 10-275 are 99% similar to a (PROTEASE PROTEIN HYDROLASE PUTATIVE) protein domain (PD004398) which is seen in Q9ZNF7_PORGI.","","Thu Jun 14 13:24:05 MDT 2001","","Thu Jun 14 13:24:05 MDT 2001","Thu Jun 14 13:24:05 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:24:05 MDT 2001","Thu Jun 14 13:24:05 MDT 2001","","","Thu Mar 10 14:09:45 2005","Thu Mar 10 14:09:45 2005","Tue Jan 2 16:03:13 2001","Wed Dec 17 10:25:03 2003","Wed Dec 17 10:25:03 2003","yes","Fri Feb 20 15:41:32 MST 1998","Residues 11-308 are 33% similar to PG1349, a collagenase.","Fri Jun 15 08:16:13 MDT 2001","Thu Mar 10 14:09:45 2005","No significant hits to the PDB database (E-value < E-10).","","","Residues 80 to 310 (E-value = 1.9e-66) place PG0679 in the Peptidase_U32 family which is described as Peptidase family U32 (PF01136)","Thu May 3 16:32:04 MDT 2001","34540542","","Sato K, Sakai E, Veith PD, Shoji M, Kikuchi Y, Yukitake H, Ohara N, Naito M, Okamoto K, Reynolds EC, Nakayama K.Identification of a New Membrane-associated Protein That Influences Transport/Maturation of Gingipains and Adhesins of Porphyromonas gingivalis.J Biol Chem. 2005 Mar;280(10):8668-77.PMID: 15634642","","Thu Mar 10 14:09:45 2005","","1","","","PG0753" "PG0679.1","800747","800397","351","GTGGCGCGTAAAATTTTTACTTCCCACGCCAAAACGAAAAAATTCCCGAGCCACGTTTTTCCAAACGCTAAACCGCCATTTTTACGAACTGACGTGTACGGAATCGGAGAGGTCAAAAAAAGCAGTAATCATGTCGAAACATTTGACCTATTCCGAGCGTCTTCACATTGTGGAAGAATACCTCGGCAGCCCCGGAGCAAGTATGCCATCAAGAAGAAGTACAACATCGCCCAGAGGCTTATTAGAGACCATTGCACGGCATTTTGCGATATGACCATTGGTCTTTTCTTACGTCGAACTGACGTCTATATACAAATGGGCTATGAACATGGAATACCATCATCCGATTTC","","","13503","VARKIFTSHAKTKKFPSHVFPNAKPPFLRTDVYGIGEVKKSSNHVETFDLFRASSHCGRIPRQPRSKYAIKKKYNIAQRLIRDHCTAFCDMTIGLFLRRTDVYIQMGYEHGIPSSDF","","GTG valine start.NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm, Periplasm","No hits found.","
InterPro
IPR012456
Family
Protein of unknown function DUF1661
PF07877\"[1-29]TDUF1661


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Tue Jan 2 17:10:06 2001","","","","Tue Jan 2 17:10:06 2001","","","Tue Jan 2 17:06:56 2001","Tue Jan 2 17:02:27 2001","Tue Jan 2 16:50:07 2001","Tue Jan 2 16:50:07 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG0679.2","800749","800477","273","TTGTGGCGCGTAAAATTTTTACTTCCCACGCCAAAACGAAAAAATTCCCGAGCCACGTTTTTCCAAACGCTAAACCGCCATTTTTACGAACTGACGTGTACGGAATCGGAGAGGTCAAAAAAAGCAGTAATCATGTCGAAACATTTGACCTATTCCGAGCGTCTTCACATTGTGGAAGAATACCTCGGCAGCCCCGGAGCAAGTATGCCATCAAGAAGAAGTACAACATCGCCCAGAGGCTTATTAGAGACCATTGCACGGCATTTTGCGATA","","","10592","LWRVKFLLPTPKRKNSRATFFQTLNRHFYELTCTESERSKKAVIMSKHLTYSERLHIVEEYLGSPGASMPSRRSTTSPRGLLETIARHFAI","","TTG leucine start.NO TIGR ID corresponds to this gene.","conserved hypothetical protein","Cytoplasm","Gapped BLAST shows residues 44-91 are 33% similar to an unknown (orf1) P.gingivalis protein, gb|AAF69127.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Tue Jan 2 17:09:23 2001","","","","Tue Jan 2 17:09:23 2001","","","Tue Jan 2 17:08:39 2001","Tue Jan 2 17:10:55 2001","Tue Jan 2 17:01:31 2001","Tue Jan 2 17:01:31 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Paralogous to PG1229.","Tue Jan 2 17:01:31 2001","Wed May 30 19:18:31 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed May 30 19:18:31 MDT 2001","","","","","","","1","","","" "PG0680","801084","803447","2364","ATGAAAAACTTAGTCATCGTAGAGTCTCCGGCAAAAGCCAAAACGATAGGACGTTTCCTCGGTTCGGATTATACAGTACTCTCGAGTTACGGACACATCCGCGACCTCAAGCCCAATAAATTCAGTGTAGATATACAAAACAACTACGAGCCGGAATACGAGATCCCTGCCGATAAACGTCCGGTAGTCAAGGAACTGAAATCCCAAGCCGACCGATCGGATTTCATCTGGCTGGCTTCCGATGAGGATCGCGAAGGAGAGGCCATCGCATGGCATTTGTACGAAGCATTAGGGCTGAAAAACAAACAGACCAAGCGAATTGTATTTCACGAAATCACCGAGACAGCCATCAGAGCTGCTATCGAAAATCCACGAGATATAGACATCAATCTGGTCGATGCCCAACAGGCGAGGCGCGTCCTCGACCGTATCGTCGGCTTCGAACTTTCTCCCGTTTTATGGAGACGTATTCGTCCTTCTCTTTCGGCAGGGCGTGTACAGTCCGTTGCACTGCGTCTTATCGTTGAGAGAGAGCGTGAGATAAATGCTTTCGTGCCGGAAGCATCCTTCCGCTGTACGATAGAGTTCGTCCTTCCCGACGGTAGAATGCTGACGGCGGAATTGCAGAAACGATTCAAGACGAAGGAGGAAGCCCGATATTTCTTGGAGCAATGTATGGATGCCCACTTTCATATAACAGACGTTACGAAGCGTCCGGGCAAACGTTCTCCGGCCACTCCTTTTACTACCTCGACGCTCCAGCAGGAAGCAGCCCGAAAACTCGGCTACGGTGTGGCACAGACCATGCGTATCGCTCAGAAGTTGTACGAAGAAGGGCTTATCACCTATATGCGTACAGACTCTGTGAATCTGTCGGATATGGCCCTCGGTGCACTCAAAAAGGAAATAACCGAACATTGGGGTGAGCAATACTACCGGTTCCGCAGGTACAAGACCAAAACCAAAGGGGCACAAGAAGCCCACGAAGCCATCCGTCCTACTTATATACATAGAGCAGAGATAGACGGCACCCCGCAAGAGCAAAAGCTATATCAACTGATCCGCCGCAGAACCATTGCTTCCCAGATGGCGGATGCCATCCTCGAAAAAACGACGATAACAATCGGAACCGACAAGTTTGCAGAGACCCTCAGCTCGCAAGGAGAGGTGATCGTATTCGACGGGTTCCTCGGAGTCTATCGTGAAGATTCGGACGAAGAACATGGCTCTGCAAATACCGAGGAGCAGCTATTGCCCTCTGTCAAAGCCGGCGATACGCTCTCTCTGCATCATGCAAAAGCAACGGAGAGCTTCACGCAGCGTCCGGCACGCTATACGGAGGCCAGCCTCGTTCGTAAAATGGAGGAGTTGGGCATCGGCAGGCCATCCACCTATGCCCCCACTATCCAAACCATACAGAATCGCGAATACGTAGTACGCGGCGACAAACCGGGCAAAACACGCGAATACATCCTGCTGGAATACCACAAGGGGAAAGCCATAACGGAGACGATCAAAACGGAACTGAACGGACAGGACCGGAATAAGCTCCTCCCCACTGATATGGGGCTTGTGGTGAACGACTTTCTCGTGGCTTCGTTCCCTCAGGTGATCGATTACAACTTCACGGCCAAAGTGGAAAAAGAATTTGACCAAATAGCCGAAGGAAAACTGCAATGGCAGAAGCAGATCGGTCGGTTCTACAACAAATTCCACCCGTTGGTGGCAGAAGCATGCGAGTTCGATCCCGACCAGAAGATCGGTGAAAGAATGCTGGGTACGGATCCTGTGACCGGAGAATCTGTGGTAGCAAAAATGGGACGCTACGGAGCGATGGTGCAGAAAGGTCGCACGGATAAGGAAAACGGTATCAAGGCGCAGTTTGCCTCGCTCCAGCCGGGACAGTCCATCGAATCCATCACGCTGGAGGAAGCTTTGGAACTATTCCTCCTGCCCAAGAAACTGGGACAATATGAGGATGCGGATGTAATGGTAGCCGTAGGACGCTTCGGCCCTTATATCAAGCATGCAGGCAAGTTTGTAGGGTTGCCAAAAGATACCGAACCCCTTTCCGTTTCGCTTGACGATGCCATCAAGTATATCGCCGACAAACGCGAGAAGGAGGAAAAAAGCCTGATCAAAGGATTTGCAGAAGATCCGGAGATGGAGATCCGCACAGGGCGTTTCGGCGTTTATATCAAATACAAAGGGAAAAACTACAAAGTCCCCAAAACGGTGGAAGACCCGGAGAAACTCACCCTCGAAGAATGTCTGAAATACGTGGAAGAGGGAGAGACGAAACCGGCCAAGGGAAAGAAAAAAGCTCCGGCCAAAAAGACATCGGCAAAGAAGACTGCCAAGAAA","9.20","10.30","89515","MKNLVIVESPAKAKTIGRFLGSDYTVLSSYGHIRDLKPNKFSVDIQNNYEPEYEIPADKRPVVKELKSQADRSDFIWLASDEDREGEAIAWHLYEALGLKNKQTKRIVFHEITETAIRAAIENPRDIDINLVDAQQARRVLDRIVGFELSPVLWRRIRPSLSAGRVQSVALRLIVEREREINAFVPEASFRCTIEFVLPDGRMLTAELQKRFKTKEEARYFLEQCMDAHFHITDVTKRPGKRSPATPFTTSTLQQEAARKLGYGVAQTMRIAQKLYEEGLITYMRTDSVNLSDMALGALKKEITEHWGEQYYRFRRYKTKTKGAQEAHEAIRPTYIHRAEIDGTPQEQKLYQLIRRRTIASQMADAILEKTTITIGTDKFAETLSSQGEVIVFDGFLGVYREDSDEEHGSANTEEQLLPSVKAGDTLSLHHAKATESFTQRPARYTEASLVRKMEELGIGRPSTYAPTIQTIQNREYVVRGDKPGKTREYILLEYHKGKAITETIKTELNGQDRNKLLPTDMGLVVNDFLVASFPQVIDYNFTAKVEKEFDQIAEGKLQWQKQIGRFYNKFHPLVAEACEFDPDQKIGERMLGTDPVTGESVVAKMGRYGAMVQKGRTDKENGIKAQFASLQPGQSIESITLEEALELFLLPKKLGQYEDADVMVAVGRFGPYIKHAGKFVGLPKDTEPLSVSLDDAIKYIADKREKEEKSLIKGFAEDPEMEIRTGRFGVYIKYKGKNYKVPKTVEDPEKLTLEECLKYVEEGETKPAKGKKKAPAKKTSAKKTAKK","800982 803447","TIGR ID: PG0754","DNA topoisomerase I","Cytoplasm","Gapped BLAST shows significant similarity to many DNA topoisomerase I proteins including 42% similarity to DNA topoisomerase I in Xylella fastidiosa (AAF83730), 37% similarity in Streptomyces coelicolor (sp|Q9X909|TOP1_STRCO), and 37% similarity in Synechocystis sp. (strain PCC 6803) (sp|P73810|TOP1_SYNY3).This sequence is similar to BT2827.","
InterPro
IPR000380
Family
DNA topoisomerase, type IA
PR00417\"[76-89]T\"[161-179]T\"[278-287]T\"[350-366]T\"[458-472]TPRTPISMRASEI
PTHR11390\"[11-484]T\"[517-578]TTopo_IA
PS00396\"[273-287]TTOPOISOMERASE_I_PROK
InterPro
IPR003601
Domain
DNA topoisomerase, type IA, domain 2
SM00436\"[103-191]TTOP1Bc
InterPro
IPR003602
Domain
DNA topoisomerase, type IA, DNA-binding
SM00437\"[236-502]TTOP1Ac
InterPro
IPR005733
Domain
DNA topoisomerase I, bacterial-type
TIGR01051\"[4-633]TtopA_bact
InterPro
IPR006154
Domain
Toprim subdomain
SM00493\"[2-102]TTOPRIM
InterPro
IPR006171
Domain
TOPRIM
PF01751\"[2-110]TToprim
InterPro
IPR013497
Domain
DNA topoisomerase, type IA, central
PF01131\"[124-553]TTopoisom_bac
InterPro
IPR013824
Domain
DNA topoisomerase, type IA, central region, subdomain 1
G3DSA:1.10.460.10\"[134-187]T\"[393-575]TTopo_IA_cen_sub1
InterPro
IPR013826
Domain
DNA topoisomerase, type IA, central region, subdomain 3
G3DSA:1.10.290.10\"[244-364]TTopo_IA_cen_sub3
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.140\"[2-133]TG3DSA:3.40.50.140
SSF56712\"[1-578]TSSF56712


","BeTs to 16 clades of COG0550COG name: Topoisomerase IAFunctional Class: LThe phylogenetic pattern of COG0550 is amtkyqvcEBrHUJgpolinxNumber of proteins in this genome belonging to this COG is 3","***** IPB000380 (Prokaryotic DNA topoisomerase I) with a combined E-value of 1.9e-135. IPB000380A 7-36 IPB000380B 76-93 IPB000380C 106-142 IPB000380D 161-192 IPB000380E 247-274 IPB000380F 279-288 IPB000380G 322-334 IPB000380H 350-366 IPB000380I 442-478***** BP03328 (TOPOISOMERASE ENZYME I ISOMERASE DNA D) with a combined E-value of 1e-06. BP03328A 162-170 BP03328B 450-464","Residues 4-186 are 57% similar to a (TOPOISOMERASE ISOMERASE DNA ENZYME DNA-BINDING I) protein domain (PD001285) which is seen in TOP1_BACSU.Residues 244-293 are 78% similar to a (TOPOISOMERASE ISOMERASE DNA ENZYME) protein domain (PD001593) which is seen in TOP1_SYNY3.Residues 580-707 are 34% similar to a (TOPOISOMERASE DNA ISOMERASE ENZYME I OMEGA-PROTEIN) protein domain (PD011368) which is seen in Q9ZDK2_RICPR.Residues 347-568 are 35% similar to a (TOPOISOMERASE ISOMERASE DNA ENZYME DNA-BINDING I) protein domain (PD001411) which is seen in TOP1_BACSU.","","Thu Jun 14 13:24:47 MDT 2001","","Thu Jun 14 13:24:47 MDT 2001","Thu Jun 14 13:24:47 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:24:47 MDT 2001","Thu Jun 14 13:24:47 MDT 2001","","","Wed Mar 22 10:36:46 MST 2000","Fri Dec 19 10:16:25 2003","Tue Jan 2 17:19:51 2001","Fri Dec 19 10:16:25 2003","Fri Dec 19 10:16:25 2003","yes","Fri Feb 20 15:41:32 MST 1998","Paralogous to PG0091 and PG1310, both predicted topoisomerases. Residues 17-534 are 26% similar to PG0091 and residues 5-483 are 25% similar to PG1310.","Fri Jun 15 08:25:23 MDT 2001","Thu Feb 15 11:10:42 MST 2001","-58% similar to PDB:1ECL AMINO TERMINAL 67KDA DOMAIN OF ESCHERICHIA COLI DNA TOPOISOMERASE I (RESIDUES 2-590 OF MATURE PROTEIN) CLONING ARTIFACT ADDS TWO RESIDUES TO THE AMINO-TERMINUS WHICH WERE NOT OBSERVED IN THE EXPERIMENTAL ELECTRON DENSITY (GLY-2, SER-1). (E_value = 1.1E_115);-58% similar to PDB:1CY0 COMPLEX OF E.COLI DNA TOPOISOMERASE I WITH 3'-5'-ADENOSINE DIPHOSPHATE (E_value = 3.2E_115);-58% similar to PDB:1CY1 COMPLEX OF E.COLI DNA TOPOISOMERASE I WITH 5'PTPTPT (E_value = 3.2E_115);-58% similar to PDB:1CY2 COMPLEX OF E.COLI DNA TOPOISOMERASE I WITH TPTPTP3' (E_value = 3.2E_115);-58% similar to PDB:1CY4 COMPLEX OF E.COLI DNA TOPOISOMERASE I WITH 5'pTpTpTp3' (E_value = 3.2E_115);","","","Residues 2 to 110 (E-value = 3e-31) place PG0680 in the Toprim family which is described as Toprim domain (PF01751)Residues 124 to 553 (E-value = 2.8e-138) place PG0680 in the Topoisom_bac family which is described as DNA topoisomerase (PF01131)","Fri Dec 19 10:16:25 2003","34540543","","","","","","1","","","PG0754" "PG0681","803454","804209","756","ATGGCGCGCTTCTTCATCTATCTGGCATACAACGGCACTCGCTACAGCGGCTGGCAAACGCAGCCTAATGCCCCCGGTGTGCAGCAGACCGTAGAGGAAGCCATATCTACCATCGTGCGCCAACCTGTCGGGGTCGTCGGAGCAGGACGAACCGATGCAGGAGTTCATGCCCACGAGATGGTAGCACATGCCGATCTTCCCTGCGATACGCCGGCGGAAGCTGCCACCCTGACAGAAAGGCTCAATAAACTCCTCCCACGCGACATCGTCATATACCGAATGGCTCCTGTCAAAGCCGATGCCCACGCGCGCTTCGATGCCATCTCCCGAACTTACCACTACTATCTGACCGAGCAGAAAGATCCTTTTATGGAAGGCTTGATGCTGAAGACCTATCGTAAGCTCGACTTCGGACGCATGAATGAAGCGGCGGCTCTTCTTCCGCGATATATCGACTTCACGAGCTTCAGCAAACTGCATACCGACGTCAAAACGAACAACTGCCGTATAACGGAAGCCCGATGGATGCCACTTGCACAGACCGGTCAATGGGTCTTTTCCATCACGGCGGACAGATTCCTGCGCAATATGGTACGTGCCATAGTCGGCACGCTCTTCCATGTGGGGACGGGCAAGCTATCCATCACAGACTTTCGGGACATCATCGAATCGCAGGATCGCAGCCGTGCCGGCTCTTCGGCTCCGGCTCATGCCCTCTATCTGGAGAGGGTAGTTTACCCGTCGGATCTGTTTCTC","9.20","4.83","28434","MARFFIYLAYNGTRYSGWQTQPNAPGVQQTVEEAISTIVRQPVGVVGAGRTDAGVHAHEMVAHADLPCDTPAEAATLTERLNKLLPRDIVIYRMAPVKADAHARFDAISRTYHYYLTEQKDPFMEGLMLKTYRKLDFGRMNEAAALLPRYIDFTSFSKLHTDVKTNNCRITEARWMPLAQTGQWVFSITADRFLRNMVRAIVGTLFHVGTGKLSITDFRDIIESQDRSRAGSSAPAHALYLERVVYPSDLFL","803454 804209","TIGR ID: PG0755","tRNA pseudouridylate synthetase A (pseudouridylate synthase I)","Cytoplasm","Gapped BLAST shows significant similarities ro many tRNA-pseudouridine synthase I proteins including 36% similarity in Pseudomonas aeruginosa (gb|AAG06502, gb|AAC23941).","
InterPro
IPR001406
Family
tRNA pseudouridine synthase
G3DSA:3.30.70.580\"[1-107]Tno description
G3DSA:3.30.70.660\"[108-244]Tno description
PTHR11142\"[4-248]TPSEUDOURIDYLATE SYNTHASE
PF01416\"[6-106]T\"[146-247]TPseudoU_synth_1
TIGR00071\"[3-241]ThisT_truA: tRNA pseudouridine synthase A


","BeTs to 17 clades of COG0101COG name: Pseudouridylate synthase (tRNA psi55)Functional Class: JThe phylogenetic pattern of COG0101 is amtkYqvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** PF01416 (tRNA pseudouridine synthase) with a combined E-value of 3.5e-22. PF01416A 8-22 PF01416B 48-57 PF01416C 101-114 PF01416D 140-156","Residues 3-244 are 36% similar to a (PSEUDOURIDYLATE SYNTHASE TRNA PSEUDOURIDINE LYASE) protein domain (PD003202) which is seen in O87016_PSEAE.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Jan 2 17:33:20 2001","Tue Jan 2 17:31:09 2001","Tue Jan 2 17:31:09 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","-49% similar to PDB:1DJ0 THE CRYSTAL STRUCTURE OF E. COLI PSEUDOURIDINE SYNTHASE I AT 1.5 ANGSTROM RESOLUTION (E_value = 7.3E_29);-47% similar to PDB:1VS3 Crystal Structure of the tRNA Pseudouridine Synthase TruA From Thermus thermophilus HB8 (E_value = 1.6E_28);-45% similar to PDB:1NT9 Complete 12-subunit RNA polymerase II (E_value = 1.6E_28);-45% similar to PDB:1PQV RNA polymerase II-TFIIS complex (E_value = 1.6E_28);-45% similar to PDB:1WCM COMPLETE 12-SUBUNIT RNA POLYMERASE II AT 3.8 ANG (E_value = 1.6E_28);","","","Residues 6 to 106 (E-value = 3.6e-25) place PG0681 in the PseudoU_synth_1 family which is described as tRNA pseudouridine synthase (PF01416)Residues 146 to 247 (E-value = 1.5e-12) place PG0681 in the PseudoU_synth_1 family which is described as tRNA pseudouridine synthase (PF01416)","","","","","","","","1","","","PG0755" "PG0682","805764","804415","1350","ATGAAGGAACTGAAATGCCCCAATTGCGGTAACTTCTTTACCGTAGATGAAGCCGATTACGCTTCGATCGTCAGTCAAGTGCGAAATGCGGAATTCGAAGCCGAAATGGAGCGTCGGATCGCTGATCTCCACAAGCAGCATCAGACCGAGCAGCAGGTGATAGAAGCAAATGCCCTGAACAAGTACCAGCAGGAACTGAACAAAAAAGCCGAAGAGCAGATTCGGATGGAGAAGGACTGGCAGGCTGCCATCGCGCAGAAAGATGCCGAGCTGGTTCGCCTGCAGTCGGAACTGAACGTCGTCGAACAAAAAAAGCAGTCCGAGCTAAGCCTCGCTATCGCAGGAAAAGAGAAAGAAATCAGCGATCTGAAATCTGCCATCAGAGACAAAGACAGTGCCTTGGAGATCGCCGTTCTCAAAGAGCAACAGAAAGCACAAGAGGATATCAAATCCAAAGAAGCAGAGATAGCCCTACTGAAAGCTTCGGCAGAGCTGGACAAGCAAAATGCAACCATTCAGGAGAATGCGCTCAAAGACCGGTATGAAGCCCGTCTGAAACTGAAGCAGGAAGAGGTGGACTATTATAAAGATCTGAAAGCTCGCATGTCCACGAAAATGATCGGGGAAACCTTAGAGATTCATTGCTCCACCCAATTCAATCAGATGCTCCGCCCCATGATGCCCAATGCCTATTTCGAAAAAGATAATGATGCATCGGGAGGTACGAAAGGGGACTTTATCTTTCGTGATTTCGGCGAAGATGGGACTGAATACGTATCCATCATGTTCGAGATGAAGAACGAAGCCGATGAGACCGCCACGAAGCATAAGAACGAAGATTTTCTCAAGAAACTGGATACCGATCGCCGGGCCAAAGGTTGCGAATTTGCCGTACTCGTCTCTCTGCTGGAGCCGGACAACGAGTTGTACAACGGCGGTATTGTGGATATGTCCTACAGATACGATAAGATGTATGTGATTCGTCCGCAGTTTTTCATTCCGATGATAACCCTCCTGGTGCAGACGTCCAAAAAGGGTCTGGAGTACAGACAGCAGCTTGCCATCGCGCAGAAACAATCCATCGATGTTTCGAATTTCGAGAGTCAGCTCGAAGATTTTCGGGAAAGATTCGGTAAAAACTATCGCCTTGCCAGCGAACGATTCAAAACGGCTATCGACGAGATAGACAAGTCCATACAGCACTTGAATAAAATCAAAGAAGCCTTGGTCGGCAGCGAGTACAACCTCCGCCTTGCGAACGACAAGGCTGAAGCCCTCACCATCAAGAAACTGACACGAGGCAATCCCACGATGAAAGCAAAGTTCGAAGAAGCCCGCCTCGCCGAAGAA","5.20","-10.91","51909","MKELKCPNCGNFFTVDEADYASIVSQVRNAEFEAEMERRIADLHKQHQTEQQVIEANALNKYQQELNKKAEEQIRMEKDWQAAIAQKDAELVRLQSELNVVEQKKQSELSLAIAGKEKEISDLKSAIRDKDSALEIAVLKEQQKAQEDIKSKEAEIALLKASAELDKQNATIQENALKDRYEARLKLKQEEVDYYKDLKARMSTKMIGETLEIHCSTQFNQMLRPMMPNAYFEKDNDASGGTKGDFIFRDFGEDGTEYVSIMFEMKNEADETATKHKNEDFLKKLDTDRRAKGCEFAVLVSLLEPDNELYNGGIVDMSYRYDKMYVIRPQFFIPMITLLVQTSKKGLEYRQQLAIAQKQSIDVSNFESQLEDFRERFGKNYRLASERFKTAIDEIDKSIQHLNKIKEALVGSEYNLRLANDKAEALTIKKLTRGNPTMKAKFEEARLAEE","805764 804415","TIGR ID: PG0756","conserved hypothetical protein","Cytoplasm, Inner membrane","Gapped BLAST shows three significant similarities including 25% similarity to a protein in Ureaplasma urealyticum (gb|AAF30776), 26% similarity to a conserved protein in Mycoplasma genitalium (sp|P47394|Y148_MYCGE) and 23% similarity to a conserved protein in Mycoplasma pneumoniae (gb|AAB96318) and hundreds of weak similarities.","No hits reported.","BeTs to 5 clades of COG1196COG name: Chromosome segregation ATPasesFunctional Class: DThe phylogenetic pattern of COG1196 is am-kYqvc-br---gpol---Number of proteins in this genome belonging to this COG is 4","No significant hit to the Blocks database.","Residues 234-408 are 29% similar to a (PROTEIN MG148 HOMOLOG) protein domain (PD037998) which is seen in Y148_MYCPN.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Jan 2 17:39:38 2001","Tue Jan 2 17:46:10 2001","Tue Jan 2 17:37:46 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540544","","","","","","1","","","PG0756" "PG0683","806461","805817","645","ATGAAAAAAGGAGATCTACTCATCCTTCTGATCATTATCCTGATGTTGGGGCTTATGCTTTCCCCTTGGACATCGGAAACATTCAACTCCCTCAGTCGCCATTATCCTTATTATATCGGTTTCCTGAAGTTTGCCATCTTGGCTACCATCGGTGAAGTACTGGCCGGACGGATCAAAGCCCAACGATACACCTGCCCCACCTATCTATGGGTGCGTATTGTGATATGGGGCATTGTCGGTATACTCATCGTCTTCAACTTCGGGTTGTACGAAGCCGGTATACGAGGTATCATCGCAAGAGGACTGCTCCCCGACATCGACAGTTCGGTCTATACGGCTTTCCTTATCTCTTCCGCCATGAATCTGACATTCGGCCCGGCCTTCATGGCCGCCCACCGCATCAGCGATACATATCTGGAGAATAAAGCTACAGGACGGGGAGGAAGCATCCGGCTCGCCGTTGAACGAGTGGATTGGAATCGCTTTATGACTTTCGTCGTTGGCAAGACCATTCCCTTCTTCTGGATACCGGCACATACGGTCACCTTTTTACTTCCACCCGAGTACCGCGTCTTTGTGGCTGCACTCCTGTCCATCGCTCTGGGACTGATCTTGGCCTTGGCTTCCTCCCGACATGCAAAGGCG","10.70","9.90","23948","MKKGDLLILLIIILMLGLMLSPWTSETFNSLSRHYPYYIGFLKFAILATIGEVLAGRIKAQRYTCPTYLWVRIVIWGIVGILIVFNFGLYEAGIRGIIARGLLPDIDSSVYTAFLISSAMNLTFGPAFMAAHRISDTYLENKATGRGGSIRLAVERVDWNRFMTFVVGKTIPFFWIPAHTVTFLLPPEYRVFVAALLSIALGLILALASSRHAKA","806461 805817","TIGR ID: PG0757","conserved hypothetical protein","Inner membrane, Cytoplasm","This sequence corresponds to gi:34396858 in Genbank.Its nearest neighbor in the NR database is gi:46578788 from Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough.","
noIPR
unintegrated
unintegrated
signalp\"[1-25]?signal-peptide
tmhmm\"[5-25]?\"[35-55]?\"[70-90]?\"[109-129]?\"[166-186]?\"[192-210]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Mar 3 14:04:21 2005","Thu Mar 3 14:04:21 2005","Tue Jan 2 17:47:46 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 3 14:04:21 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540545","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Thu Mar 3 14:04:21 2005","","1","","","PG0757" "PG0684","808645","806561","2085","ATGCTCACAGCATGTAACGGCAGCCGTAAAGGAGATGCCAACCTCTCCGACAATCCTCTGCTGCAATCGAGTGCTCTCTTCATGGAAGCACCCGAATTCGACAAAATCAAAACCGAACACTTCCTGCCTGCTTTCGAAGCCGGCATGGAGCAGCAGTTGGCCGAGATCGATTCGATCGTGAACAACTCCGAAGCTCCCACTTTCGAGAATACGCTCGTAGCCATGGAACGTTCGGGACAGACACTCAAACGTGTTTCCAATGTCTTCTTCGGTCTCACGGGAGCCAATACGAACGATGAACTACAGAAAATCGAAGAAAAAGTATCGCCCCTTTTGGCTGCACACAGCGATGCCATCTACCTTAACGACAAACTTTTCCAACGCGTAAAAGCCGTTTACGAAAGTGACCAATCCGCCATCGAACCCGAGGGACAAAAGTTGATCCAAGAGTATTACGATGCCTTTGTCCGTGCCGGTGCCAATCTGAGTGCCGAGGACAAGGCCAAGCTCATGGAACTGAACAAGGAAGAGGCTTCGCTGACGACCGAATTCGGCAACAAGCTGATCGCAGCCACCAATGCCGCAGCGGTAATCGTAGGGAGCAAAGACTCGCTCGATGGTCTTAGCGAAACGGAGATAGCCAAAGCTGCAAGCGATGCCAAAGCTGCCGGCCACGAAGGCAAATACCTGTTGAATATCACCAATACCACTCAGCAGGATTATCTCTCGGTACTGAACGACCGTACCATTCGTCAGCGTGTATTGGAGGCCTCTATCCATCGCACGGACAAAGGCGATGCCAACGACACGCAGTCCATCGTACTTCGTCTGGCCAGGCTCCGCGCACAGAAGGCTCGCCTTCTCGGCTTCCCTAATTATGCCGCATGGAAGCTTCAGAATCAGATGGCTAATAATCCGGAGACAGTGCTGGCTTTTGTCAAGTCGATAGCTACGCCCTATGCTCCACAGGCACAGAAAGACGCTGCCGAACTTCAGGCTTATGCCCGCTCCAAAGGTTTCGAAGGAGACCTTACGGCTGCTGACTGGAACTACTATGCCGATAAGCTCCGCAAGGAAAAGTTCGGTCTGGATGAGAACGAAGTGAAGCAGTACTTTGTGACGGACAGCGTCCTCAAGAATGGAGTATTCTATGCTGCCAACAAGCTCTATGGCCTCACATTCAAGGAGCGTACCGATCTGCCCGTCTATGCCGAAGATGTACGCGTATTCGATGTTATCGACCAAGATGGCAAGCAGCTCGCACTCTTCTACACCGACCTCTATCGCCGTCCGACCAAGAGCGGAGGTGCATGGATGAGCAACTGGGTAGACCAAAGCTACCTGCTGAACCAAAAGCCGGTGATCTACAATGTTTGCAACTATGCCAAAGGCGTTGATGGTCAGCCCTCTCTCATCAACTACGATGAGGTGACCACTCTCTTCCACGAATTCGGTCATGCCCTCCACGGTATGTTTGCCGCCCAGCAGTATCCTTTGCTCTCCGGTACGAATGTGGCGCGTGACTTCGTCGAGATGCCGTCTCAGCTCAACGAACATTGGGCTATGGATCCGGAAGTGTTTGCCAACTACGCTAAGCACTGGAAGACACAGGAGCCTATGCCGGCCGAATTGGTCAAGAAGATTCAGGATGCGAGCGACTTCAATCAGGCTTATTCTATGGGAGAAAATCTTGCAGCCGTAAGCCTCGATCAGGCATGGCATACGCTCACGGTCGAAGAGGCGGAGGCCATTACCGACGTGGCCAAGTTCGAAGAAGAAGCCCTGCGCAAAGTCGGTCTCTACAATCCGCAGATACCTCCTCGCTATCGCTCCTCTTATTTCCGCCATATCTGGAGCAATGGTTATGCATCCGGTTACTACGCTTATCTGTGGACAGAAGTGCTGGATCACAACGTTTATCAATGGATGGTGCAAAACGGTGGTATGACTCCGCAAAACGGACAACGCCTTCGGGATATGATTCTTTCGCGTGGCAATACACAGGATTTCAACGTGATCTTCACCGCGTTCACCGGTCTGCAAAAGCCTGACATCAGGGATTTGCTCCGCGCTCGCGGTCTCATG","5.10","-18.13","78149","MLTACNGSRKGDANLSDNPLLQSSALFMEAPEFDKIKTEHFLPAFEAGMEQQLAEIDSIVNNSEAPTFENTLVAMERSGQTLKRVSNVFFGLTGANTNDELQKIEEKVSPLLAAHSDAIYLNDKLFQRVKAVYESDQSAIEPEGQKLIQEYYDAFVRAGANLSAEDKAKLMELNKEEASLTTEFGNKLIAATNAAAVIVGSKDSLDGLSETEIAKAASDAKAAGHEGKYLLNITNTTQQDYLSVLNDRTIRQRVLEASIHRTDKGDANDTQSIVLRLARLRAQKARLLGFPNYAAWKLQNQMANNPETVLAFVKSIATPYAPQAQKDAAELQAYARSKGFEGDLTAADWNYYADKLRKEKFGLDENEVKQYFVTDSVLKNGVFYAANKLYGLTFKERTDLPVYAEDVRVFDVIDQDGKQLALFYTDLYRRPTKSGGAWMSNWVDQSYLLNQKPVIYNVCNYAKGVDGQPSLINYDEVTTLFHEFGHALHGMFAAQQYPLLSGTNVARDFVEMPSQLNEHWAMDPEVFANYAKHWKTQEPMPAELVKKIQDASDFNQAYSMGENLAAVSLDQAWHTLTVEEAEAITDVAKFEEEALRKVGLYNPQIPPRYRSSYFRHIWSNGYASGYYAYLWTEVLDHNVYQWMVQNGGMTPQNGQRLRDMILSRGNTQDFNVIFTAFTGLQKPDIRDLLRARGLM","808711 806561","TIGR ID: PG0758","peptidyl dipeptidase (oligopeptidase A)","Periplasm, Cytoplasm, Extracellular","Gapped BLAST shows many significant hits including 52% similarity to a peptidyl-dipeptidase in Xylella fastidiosa (gb|AAF84746), 49% similarity in Salmonella typhimurium (gb|AAA27055) and 48% similarity to two dipeptidyl carboxypeptidases II in E.coli (gb|AAC74611,emb|CAA41014).This sequence is similar to BT2834.","
InterPro
IPR001567
Domain
Peptidase M3A and M3B, thimet/oligopeptidase F
PF01432\"[241-694]TPeptidase_M3
InterPro
IPR006025
Binding_site
Peptidase M, neutral zinc metallopeptidases, zinc-binding site
PS00142\"[479-488]?ZINC_PROTEASE
noIPR
unintegrated
unintegrated
G3DSA:1.10.1370.10\"[158-694]TG3DSA:1.10.1370.10
PTHR11804\"[368-695]TPTHR11804
PTHR11804:SF8\"[368-695]TPTHR11804:SF8
SSF55486\"[21-694]TSSF55486


","BeTs to 3 clades of COG0339COG name: Zn-dependent oligopeptidasesFunctional Class: EThe phylogenetic pattern of COG0339 is ----Y--cE--h---------Number of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 13:25:33 MDT 2001","","Thu Jun 14 13:25:33 MDT 2001","Thu Jun 14 13:25:33 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:25:33 MDT 2001","Thu Jun 14 13:25:33 MDT 2001","","","Tue Jan 2 17:59:09 2001","Fri Dec 19 10:20:23 2003","Tue Jan 2 17:59:09 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 18-695 share 35% identity with PG1565, peptidyl-dipeptidase.","Fri Jun 15 08:27:06 MDT 2001","Tue Apr 3 14:32:09 MDT 2001","-66% similar to PDB:1Y79 Crystal Structure of the E.coli Dipeptidyl Carboxypeptidase Dcp in Complex with a Peptidic Inhibitor (E_value = 6.0E_179);-44% similar to PDB:1S4B Crystal structure of human thimet oligopeptidase. (E_value = 3.4E_49);-44% similar to PDB:2O36 Crystal structure of engineered thimet oligopeptidase with neurolysin specificity in neurotensin cleavage site (E_value = 1.7E_48);-46% similar to PDB:2O3E Crystal structure of engineered neurolysin with thimet oligopeptidase specificity for neurotensin cleavage site. (E_value = 6.5E_48);-46% similar to PDB:1I1I NEUROLYSIN (ENDOPEPTIDASE 24.16) CRYSTAL STRUCTURE (E_value = 3.2E_47);","","","Residues 241 to 694 (E-value = 4.3e-131) place PG0684 in the Peptidase_M3 family which is described as Peptidase family M3 (PF01432)","Tue Apr 3 14:32:09 MDT 2001","34540546","","","","","","1","","","PG0758" "PG0685","810876","808726","2151","ATGAGCCGAAAAACAATGAATCCAACAACAGTGACTCAGCAATTACAAAAAACATATCAGGCTGTCGGGGATGGACTGCTGAGCGAGGCGTTCGGCCTCGTCCGTGCATCGGTACCCTCGCAGCAATCGCATTTCCTCACACGCATCGACGATCTGGAGAACGTCTATCGGCAGCTCTTGTCATACTTCGCCCAAGGTGTGAAAGACGAAAAACAGGCCGAGATGCTCCTCTACCTCAAGCGCAAACTCATAGGTCTGGCAGCTGAAGTGCATCGCGAATCCGTGGTGGCACAGGGCACGGGGCTTTTCTACGATCGCCTTCGTTACCGCCGCAGCATCGGTTTCGAAAGCCTTGTCACCTTGCTGGAGCAGGCTGAGACAAGCACTGTCCGCAAGCAGTTCGACGAATTGGTACGGCTCATATTCGATAGCTTGTGGACGGCCGATGCTCTGACGGACGAAGAGGCTGCTGCCCTCTCGCATGCCGGCGAATACATTCGCCTCGTGGCGGCGTCGGCCTTGACAATGGCTCTGCAACAACAGTGGCACTCGAAAAAGCTCTACTTCCTGCTCGAAGAGCTGGCTCGCCCCGACATTACAGCCGACTATCGCGCCCGCCTGCTGGTCGGAGTCGTTCTCACCCTTCGTTCCTATCCCCACCATACCCGACTCTATTATAATGAGATCGCATTGCGACTGGAAGCCGTCAATGAACATATCCCTTTGGAACCGACCCTTGAGATGCTTTCGATCCGTTTCCTCTTTGCCTGCGAAACAGAGTCCATCACCAAGCATCTGCAAACCGAGCTTTTCAGCGATATACAGAAGATAGCCCCCGACCTGCGCAAATTCGGTATGGGAGATACCGAGTCCATACAGGAGACAGGCAATCCGGAGTGGATGGAGGAGCTGGAGAAGAGCGGTCTGGGAGACAAAATCAGGGAGTTCTCGGAGTTGCAGCTCGAAGGAGCCGATGTAATGCACTCTTCGTTCATGAACTTGAAGGGAAGCAGCTTTTTCCGCGAGATGCACAACTGGTTTCTGCCTTTCGATGCCGCCCACAGCCGGATAGCTCCACTGCTCGAAGAGAATGCTGTGCTCAAGCAGCTTGTGGAGGCGATAGGCCCACAGCTTTGCAACTCGGACCGCTACTCTTTCATCGTTTCGATGGAAAGCCTCCCTGCTGCACTTCGAGGTTCGGCCATGGGAGCCGTAGGCGGTGAACTGGATGCACTCAAAGAGCAGATAAAGCAGGATGTACCGGTCGGCGAAACCGGCAAATTGGACACGGCCATCAAGAGCTATCTGCAGGATCTGTACAGATTCTATAAGGTATGCGAACGGAAGAACGAATTTGACGATATTTTCCTCTCGCCCATCCCACCGGATCTGCCTGTGCTCGATCGCTATCTCTACAAGCGTGATACGCTGCTGCATACGGCCGAATTTCTCTTCCGCCGCAAGCATTACGATCGGGCAGCGAAGCTGCTGGCCGATTTGGCTGAAGGGAAAGAAAGTGCCACGGATACCACTCTGCACCAAAAGCTGGGTTTCTCCCTCCAGCAGCAGGGCCTTTTCGCCCAAGCTTTGGCTGCATATTCGCGTGCCGAACTGATCGATACGGAGAACGAATGGCTGCTCAAGCGTATGGCTCACTGTTACCGCCAGCTGTGCCGTCCGGCCGAAGCGGCCGAAATATATGAACGACTCTTCGAGCGCAATCCGCACGAAGCGACTCTACTCCTGCAGCGAGGAAATGCGCTCGTCGAGGACAGCCGATACGATGAAGCTCTACAATGCTTCTTCCGATATGAGTTCAGTGTGGACGATGCTTCCAAGGCTCGTCGTCCCATCGCTTGGTGCCTCTTCCTCACCGGCCAGTACGAACGTGCCGGCGATTACTATCGCACCATACTGGAATCCGACGATCTCTCGACTTTCACCGATCGGCTCAATGCCGGGCATACGTCTTTGGCTATGGGGCAGATCCCTGTTGCGATCGACCATTATCTTGCGGGATTGAAGCTCACTCCGAACGGGAAAGATGAATTTCTCGCAGCCTATACGGCAGACATACCGGTTCTTCTCAAAGCCGGTATCGAGGATGCCGTCATCAGGCTCATTCCGGAAGTATTGAGGCTACACCCGAAC","5.40","-18.66","81694","MSRKTMNPTTVTQQLQKTYQAVGDGLLSEAFGLVRASVPSQQSHFLTRIDDLENVYRQLLSYFAQGVKDEKQAEMLLYLKRKLIGLAAEVHRESVVAQGTGLFYDRLRYRRSIGFESLVTLLEQAETSTVRKQFDELVRLIFDSLWTADALTDEEAAALSHAGEYIRLVAASALTMALQQQWHSKKLYFLLEELARPDITADYRARLLVGVVLTLRSYPHHTRLYYNEIALRLEAVNEHIPLEPTLEMLSIRFLFACETESITKHLQTELFSDIQKIAPDLRKFGMGDTESIQETGNPEWMEELEKSGLGDKIREFSELQLEGADVMHSSFMNLKGSSFFREMHNWFLPFDAAHSRIAPLLEENAVLKQLVEAIGPQLCNSDRYSFIVSMESLPAALRGSAMGAVGGELDALKEQIKQDVPVGETGKLDTAIKSYLQDLYRFYKVCERKNEFDDIFLSPIPPDLPVLDRYLYKRDTLLHTAEFLFRRKHYDRAAKLLADLAEGKESATDTTLHQKLGFSLQQQGLFAQALAAYSRAELIDTENEWLLKRMAHCYRQLCRPAEAAEIYERLFERNPHEATLLLQRGNALVEDSRYDEALQCFFRYEFSVDDASKARRPIAWCLFLTGQYERAGDYYRTILESDDLSTFTDRLNAGHTSLAMGQIPVAIDHYLAGLKLTPNGKDEFLAAYTADIPVLLKAGIEDAVIRLIPEVLRLHPN","811035 808726","TIGR ID: PG0759","hypothetical protein","Cytoplasm","Gapped BLAST shows weak similarity to numerous small segments of prokaryotic and eukaryotic proteins, but no significant hits.","
InterPro
IPR001440
Repeat
Tetratricopeptide TPR_1
PF00515\"[510-543]T\"[544-577]T\"[578-601]TTPR_1
InterPro
IPR011990
Domain
Tetratricopeptide-like helical
G3DSA:1.25.40.10\"[475-717]TTPR-like_helical
InterPro
IPR013026
Domain
Tetratricopeptide region
SM00028\"[510-543]T\"[544-577]T\"[647-680]TTPR
PS50293\"[474-717]TTPR_REGION
noIPR
unintegrated
unintegrated
PTHR23083\"[466-717]TPTHR23083
SSF48452\"[474-679]TSSF48452


","BeTs to 9 clades of COG0457COG name: TPR-repeat-containing proteinsFunctional Class: RThe phylogenetic pattern of COG0457 is AMTKYQVCEB-HUJ--OLINXNumber of proteins in this genome belonging to this COG is 21","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Fri Jun 15 09:41:49 MDT 2001","","Fri Jun 15 09:41:49 MDT 2001","Fri Jun 15 09:41:49 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 09:41:49 MDT 2001","Fri Jun 15 09:41:49 MDT 2001","","","Tue Jan 2 18:16:22 2001","Tue Jan 2 18:15:31 2001","Tue Jan 2 18:15:31 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found.","Fri Jun 15 09:43:55 MDT 2001","Tue Apr 3 14:39:41 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Apr 3 14:39:41 MDT 2001","34540547","","","","","","1","","","PG0759" "PG0686","811839","811063","777","ATGGAAGAGGTATCTCCCGACCACAGCACCATCAGTCGATTTCGTTCGGCACTGACAGAGTTGGGGCTCATGGACAAACTATTGGCGCAGTTTAACAAACAACTTTCCCGCCATCACATTTCGGTCAGGGAAGGGGTGCTTGTCGATGCAAGCCTTGTGGAGACGCCGCATAAACCCAACGGAAGCATTACGATTGAAGTCGCAGACGACAGAGAAGACAATCGGAGCGAGGAGGAAAAAGAGGCAGAGGAGGATTATCAAAAACAGGTTGTCCGTCAGCGTAAAGGGACGGATGAAGAAGCCCGTTGGGTTTACAAACAAAAGCGTTATCACTACGGATACAAAAAGCATTGTCTGACCAATGTTCAAGGCATTGTTCAAAAGGTGATAACGACTGCAGCGAACCGCAGTGACACGAAGGAGTTTATTGCGCTATTGCAGGGTGCAAACATACCTCAAGGCACAGCCGTCTTCGCGGACAAAGGATATGCTTGCGGGGAAAATCGTTCCTACCTGCAAACCCATCACCTTCAAGACGGCATCATGCACAAGGCACAACGCAACAGGGCATTGACCGAGGAAGAGAAGCAACGAAACAAAGCAATCAGTCGGATACGGAGCACCATCGAACGCACCTTTGGCAGTATTCGCCGGTGGTTTCATGGCGGACGATGTCGATACCGGGGACTTGCCAAGACCCATACTCAAAACATTCTTGAAAGCATCGCCTTTAATTTATACAGAACCCCGGGGATAATTATGTCCTCATTTGTAGGA","10.10","10.52","29745","MEEVSPDHSTISRFRSALTELGLMDKLLAQFNKQLSRHHISVREGVLVDASLVETPHKPNGSITIEVADDREDNRSEEEKEAEEDYQKQVVRQRKGTDEEARWVYKQKRYHYGYKKHCLTNVQGIVQKVITTAANRSDTKEFIALLQGANIPQGTAVFADKGYACGENRSYLQTHHLQDGIMHKAQRNRALTEEEKQRNKAISRIRSTIERTFGSIRRWFHGGRCRYRGLAKTHTQNILESIAFNLYRTPGIIMSSFVG","811839 811063","Member of the IS5 family of elements. Reproduces the middle and C-terminal domains of full-length ISPg1 elements (e.g. PG1662).TIGR ID: PG0760","ISPG1 transposase fragment (IS1106-related transposase)","Cytoplasm","PG0686 is equivalent to the previously sequenced AJ130872 and AB015879 in GenBANK. Residues 6-248 are 35% similar to the IS1106 sequence of N.meningitidis (AE002488).","
InterPro
IPR002559
Domain
Transposase, IS4-like
PF01609\"[45-246]TTransposase_11


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 201-259 are identical to a (TRANSPOSASE ORF7 INSERTION SEQUENCE IS1126-LIKE GENE) protein domain (PD187845) which is seen in Q9ZA61_PORGI.Residues 55-200 are 86% similar to a (TRANSPOSASE PLASMID PROTEIN ELEMENT) protein domain (PD004652) which is seen in Q9ZA61_PORGI.Residues 8-54 are identical to a (TRANSPOSASE ORF7 INSERTION SEQUENCE) protein domain (PD187846) which is seen in Q9ZA61_PORGI.","","","","","","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","","","","Fri Feb 16 11:45:57 MST 2001","Fri Feb 16 11:45:57 MST 2001","Thu Dec 21 14:49:46 MST 2000","Thu Dec 21 14:30:46 MST 2000","","Wed Feb 14 11:22:00 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG0686 is virtually identical to PG1087, PG0763, PG1755, PG1184, PG0756, PG1798, PG1230, PG1919, PG0044, PG0689, PG1215, PG1665, PG0839, PG1895, all ISPg1 fragments that reproduce the middle and C-terminal residues of PG1267, PG0169, PG1050, PG1062, PG0740, PG0918, PG1662, PG1422, PG0420, PG0499, PG1099.Also, partial similarities to PG0732, PG0842, PG0883, PG1231, PG0730, PG1159, PG1608.","Fri Feb 16 11:45:57 MST 2001","Wed Feb 14 11:22:00 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 45 to 246 (E-value = 1.7e-40) place PG0686 in the Transposase_11 family which is described as Transposase DDE domain (PF01609)","Thu Jun 14 13:26:57 MDT 2001","","","Hanley,S.A., Aduse-Opoku,J. and Curtis,M.A.A 55-kilodalton immunodominant antigen of Porphyromonas gingivalisW50 has arisen via horizontal gene transferInfect. Immun. 67 (3), 1157-1171 (1999)Maley,J. and Roberts,I.S.Characterisation of IS1126 from Porphyromonas gingivalis W83: a new member of the IS4 family of insertion sequence elementsMicrobiol. Lett. 123 (1-2), 219-224 (1994)Shibata,Y., Hayakawa,M., Takiguchi,H., Shiroza,T. and Abiko,Y.Determination and characterization of the hemagglutinin-associatedshort motifs found in Porphyromonas gingivalis multiple geneproducts. J. Biol. Chem. 274 (8), 5012-5020 (1999)","Knight,A.I., Ni,H., Cartwright,K.A. and McFadden,J.J.Identification and characterization of a novel insertion sequence, IS1106, downstream of the porA gene in B15 Neisseria meningitidis.Mol. Microbiol. 6 (11), 1565-1573 (1992)","Wed Feb 14 11:22:00 MST 2001","Wed Feb 14 11:22:00 MST 2001","1","","","PG0760" "PG0687","812900","814273","1374","ATGAACGTATCGATCAAGAATACGGATGCCGTCAATGCCATTGCTACGGTAGCAATCGAGAAGGCTGATTATGCCAACGAAGTGGAAAAAGCTCTGCGTACCTATCGCCAACGTGCCAATGTCCCCGGATTCCGCAAGGGGATGGTACCGATGGGTATGATCAAGAAAATGTACGGTAAGGGTGTCAAAGCAGAGGAGATCAACCGCGTAGTCGGTCGTGAACTCTATCGTTATATAGCAGAGAACAAACTCAATGTACTGGGAGAGCCTATGCCTAACGAGGAATTGCAGAAGGAGTACGACTTCGATACCACTGACGACTTTGAATTCGTATTCGACCTGGCTCTCAGCCCCGTGGTGGACGTAGTGGTAGACAAGAGCATTCGTGTACCTTATTATACGATCCAACCCACAGAGGAGATGATCGACCGGCAGATCGAATCTATGAGATCCAGCTACGGACATTCGGTGGAAGCCGATGAAGTGACTGCCAACGATGTAGTGAAGGGGCGTCTTTGCGAATTGGAGGATGGCCAACCCAAAGAAGGTGGTATCTGTGTGGAAGAAGCCATGTTGCTTCCGGCCTATATGAAGGACGAAGAGGAGAAGAATAAATTCGTCGGCGCTGCCAAGAACAGCGTTGTCGTATTCAATCCCTCGAAGGCATACAATAATAATGAGTACGAACTTTCCTCCCTCCTGAAAGTGGACAAGTCGGCTATCGGAGAGCATACAGGTGACTTTTCTTTCGAAATCAGCAGTATCTCCCGACATGAAAAGGCTGAACTGAATGAAGAGTTCTTCAAACAGGCTTTCGGCGAGGAGACGGATATCAAAAACGAAGCGGACTTGCGTGTTAAGGTAACCGAAGGTGTTCGCGAGCAATTCACGGCCGAAAGCGACTACAAATTTCTCATCGATCTGCGCCGCGAATTGGAAGCTCAGGTAGGAGAGTTGCAGTTCCCCGATGCCCTGCTGAAGCGCTGGCTGAAACTGTCGCACACGGAGTGGAGTGATGAAGAACTGGAAAAGCAGTACCCTGCCATGATCAAGGATCTGACTTTCCATGTGATCAAGGAAGATCTGGTGAAGAAGAACGACATCGTGGTTACGCCGCAAGAGGTCAGGAATTTCGCCATCATTGTAGCCAAGAATCAGTTTGCTCAGTATGGCATGTCCGCCGTTCCTCAGGATGCTCTCGAACGCTATGCCAATACGATGATGGAGAAGGAAGATGCTCGTCGCAATTTCTTCGACCGTGTTACGGAAAATAAGCTGGCTGCCGCGTTGAAAGAAAAGCTCGATATCGATGCCAAGACGGTTTCTCCGGACGAATTCAACAAACTGATGACCGAACAGCCTGCTTCGGCTGAG","4.60","-24.80","52272","MNVSIKNTDAVNAIATVAIEKADYANEVEKALRTYRQRANVPGFRKGMVPMGMIKKMYGKGVKAEEINRVVGRELYRYIAENKLNVLGEPMPNEELQKEYDFDTTDDFEFVFDLALSPVVDVVVDKSIRVPYYTIQPTEEMIDRQIESMRSSYGHSVEADEVTANDVVKGRLCELEDGQPKEGGICVEEAMLLPAYMKDEEEKNKFVGAAKNSVVVFNPSKAYNNNEYELSSLLKVDKSAIGEHTGDFSFEISSISRHEKAELNEEFFKQAFGEETDIKNEADLRVKVTEGVREQFTAESDYKFLIDLRRELEAQVGELQFPDALLKRWLKLSHTEWSDEELEKQYPAMIKDLTFHVIKEDLVKKNDIVVTPQEVRNFAIIVAKNQFAQYGMSAVPQDALERYANTMMEKEDARRNFFDRVTENKLAAALKEKLDIDAKTVSPDEFNKLMTEQPASAE","812780 814273 [Shorter 900 1458 99]","TIGR ID: PG0762","trigger factor (peptidyl prolyl cis-trans isomerase)","Cytoplasm","Gapped BLAST shows numerous hits to trigger factors including 19%-25% similarity to trigger factors in Pseudomonas aeruginosa (gb|AAG05189), Vibrio cholerae (gb|AAF95071), Streptomyces coelicolor (emb|CAC09996), Helicobacter pylori (gb|AAD07843), E.coli (gb|AAA62791,gb|AAC73539) and HI0713 in Haemophilus influenzae Rd.This sequence is similar to BT3841.","
InterPro
IPR005215
Family
Trigger factor
PIRSF003095\"[1-454]TTrigger_factor
InterPro
IPR008881
Domain
Bacterial trigger factor, N-terminal
PF05697\"[1-150]TTrigger_N
noIPR
unintegrated
unintegrated
G3DSA:3.30.70.1050\"[1-116]TG3DSA:3.30.70.1050
SSF102735\"[1-134]TSSF102735
SSF109998\"[263-451]TSSF109998


","BeTs to 10 clades of COG0544COG name: FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor)Functional Class: OThe phylogenetic pattern of COG0544 is -----qvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 28-184 are 27% similar to a (TRIGGER FACTOR ISOMERASE TF) protein domain (PD005917) which is seen in TIG_HAEIN.","","Thu Jun 14 13:28:52 MDT 2001","","Thu Jun 14 13:28:52 MDT 2001","Thu Jun 14 13:28:52 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:28:52 MDT 2001","Thu Jun 14 13:28:52 MDT 2001","","","Wed Jan 3 11:12:42 2001","Fri Dec 26 14:09:49 2003","Wed Jan 3 10:48:15 2001","","Fri Dec 26 14:09:49 2003","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 14 13:25:48 MST 2001","-38% similar to PDB:1T11 Trigger Factor (E_value = 1.1E_10);","","","Residues 1 to 156 (E-value = 3.4e-21) place PG0687 in the Trigger_N family which is described as Bacterial trigger factor protein (TF) (PF05697)","Wed Mar 14 13:25:48 MST 2001","34540548","","","","","","1","","","PG0762" "PG0689","815133","815909","777","ATGGAAGAGGTATCTCCCGACCACAGCACCATCAGTCGATTTCGTTCGGCACTGACAGAGTTGGGGCTCATGGACAAACTATTGGCGCAGTTTAACAAACAACTTTCCCGCCATCACATTTCGGTCAGGGAAGGGGTGCTTGTCGATGCAAGCCTTGTGGAGACGCCGCATAAACCCAACGGAAGCATTACGATTGAAGTCGCAGACGACAGAGAAGACAATCGGAGCGAGGAGGAAAAAGAGGCAGAGGAGGATTATCAAAAACAGGTTGTCCGTCAGCGTAAAGGGACGGATGAAGAAGCCCGTTGGGTTTACAAACAAAAGCGTTATCACTACGGATACAAAAAGCATTGTCCGACCAATGTTCAAGGCATTGTTCAAAAGGTGATAACGACAGCAGCGAACCGCAGTGACACGAAGGAGTTTATTCCGCTATTGGAGGGTGCAAACATACCTCAAGGCACAGCCGTCTTGGCGGACAAAGGATATGCTTGCGGGGAAAATCGTTCCTACCTGCAAACCCATCACCTTCAAGACGGCATCATGCACAAGGCACAACGCAACAGGGCATTGACCGAGGAAGAGAAGCAAGGAAACAAAGCAATCAGTCGGATACGGAGCACCATCGAACGCACCTTTGGCAGTATTCGGCGGTGGTTTCATGGCGGACGATGTCGATACCGGGGACTTGCCAAGACCCATACTCAAAACATTCTTGAAAGCATCGCCTTTAATTTATACAGAACCCCGGGGATAATTATGTCCTCATCTCTAGGA","9.80","8.52","29577","MEEVSPDHSTISRFRSALTELGLMDKLLAQFNKQLSRHHISVREGVLVDASLVETPHKPNGSITIEVADDREDNRSEEEKEAEEDYQKQVVRQRKGTDEEARWVYKQKRYHYGYKKHCPTNVQGIVQKVITTAANRSDTKEFIPLLEGANIPQGTAVLADKGYACGENRSYLQTHHLQDGIMHKAQRNRALTEEEKQGNKAISRIRSTIERTFGSIRRWFHGGRCRYRGLAKTHTQNILESIAFNLYRTPGIIMSSSLG","815133 815909","Member of the IS5 family of elements. Reproduces the middle and C-terminal domains of full-length ISPg1 elements (e.g. PG1662).TIGR ID: PG0764","ISPg1 transposase fragment (IS1106-related transposase)","Cytoplasm","PG0686 is equivalent to the previously sequenced AJ130872 and AB015879 in GenBank. Residues 6-248 are 35% similar to the IS1106 sequence of N.meningitidis (AE002488).","
InterPro
IPR002559
Domain
Transposase, IS4-like
PF01609\"[45-246]TTransposase_11


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 201-259 are 96% similar to a (TRANSPOSASE ORF7 INSERTION SEQUENCE IS1126-LIKE GENE) protein domain (PD187845) which is seen in Q9ZA61_PORGI.Residues 55-200 are 86% similar to a (TRANSPOSASE PLASMID PROTEIN ELEMENT) protein domain (PD004652) which is seen in Q9ZAD0_PORGI.Residues 8-54 are identical to a (TRANSPOSASE ORF7 INSERTION SEQUENCE) protein domain (PD187846) which is seen in Q9ZA61_PORGI.","","","","","","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","","","","Fri Feb 16 12:05:51 MST 2001","Fri Feb 16 12:05:51 MST 2001","Wed Jan 3 11:40:46 2001","Wed Jan 3 11:40:46 2001","","Wed Feb 14 11:38:39 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG0689 is virtually identical to PG1087, PG0763, PG1755, PG0686, PG0756, PG1798, PG1230, PG1919, PG0044, PG1184, PG1215, PG1665, PG0839, PG1895, all ISPg1 fragments that reproduce the middle and C-terminal residues of PG1267, PG0169, PG1050, PG1062, PG0740, PG0918, PG1662, PG1422, PG0420, PG0499, PG1099.Also, partial similarities to PG0732, PG0842, PG0883, PG1231, PG0730, PG1159, PG1608.","Fri Feb 16 12:05:51 MST 2001","Wed Feb 14 11:38:39 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 45 to 246 (E-value = 1.2e-36) place PG0689 in the Transposase_11 family which is described as Transposase DDE domain (PF01609)","Thu Jun 14 13:29:38 MDT 2001","","","Hanley,S.A., Aduse-Opoku,J. and Curtis,M.A.A 55-kilodalton immunodominant antigen of Porphyromonas gingivalisW50 has arisen via horizontal gene transferInfect. Immun. 67 (3), 1157-1171 (1999)Maley,J. and Roberts,I.S.Characterisation of IS1126 from Porphyromonas gingivalis W83: a new member of the IS4 family of insertion sequence elementsMicrobiol. Lett. 123 (1-2), 219-224 (1994)Shibata,Y., Hayakawa,M., Takiguchi,H., Shiroza,T. and Abiko,Y.Determination and characterization of the hemagglutinin-associatedshort motifs found in Porphyromonas gingivalis multiple geneproducts. J. Biol. Chem. 274 (8), 5012-5020 (1999)","Knight,A.I., Ni,H., Cartwright,K.A. and McFadden,J.J.Identification and characterization of a novel insertion sequence, IS1106, downstream of the porA gene in B15 Neisseria meningitidis.Mol. Microbiol. 6 (11), 1565-1573 (1992)","Wed Feb 14 11:38:39 MST 2001","Wed Feb 14 11:38:39 MST 2001","1","","","PG0764" "PG0690","818496","816268","2229","ATGCTTAACGTTGTAAGTAAGACTATCGATCTGGGAGATGGTCGTTCCATCAAGATCGAAACCGGTAAATTGGCCAAGCAGGCCGATGGCGCCGTGACAGTCACCATGGGCAATACGGTATTGCTCGCTACAGTTTGTGCAGCCAAAGACGCTAACCCCGGCTGCGACTTCATGCCTCTTCAGGTGGAATACAAAGAGAAATACTCCGCCATCGGACGCTTCCCCGGAGGATTCACTCGCCGCGAAGGCAAAGCTTCGGATTACGAGATCCTGACCTGCCGCCTTGTGGATCGTGCCCTTCGTCCGCTATTCCCGGACAATTATCATGCAGAGGTATTCGTCAATGTGATCCTCTTTTCAGCCGATGGCGAGGATATGCCCGACGCCTTGGCCGGTCTGGCTGCTTCGGCGGCTCTTGCCGTTTCCGATATACCGTTCAACGGCCCTATCAGCGAAGTGCGCGTAGCACGTGTGGACGGCCGCTATATCGTCAATCCTACTTTCGAGCAGCTCGAACGCGCAGACATCGACTTGATGGTCGGAGCCACAATGGACAACATCATGATGGTCGAAGGTGAAATGGACGAGGTACAGGAATCCGAAATGCTCGAAGGCATACGCGTGGCACACGAAGCCATCAAGGTACAGTGCAAGGCGCAGCTCGAACTATCCGAAGCTGTAGGAAAACTTCAAAAGCGTGAATACAGCCATGAAGTAAACGATGAAGACCTGCGCAAGAAAGTGCACGACGAATGCTATGCTCGTGCCTATGAGGTGGCTACCAGCGGAACCGGCAAACACGAGCGCGGCGAAGCTTTTGAAAAGATCGTGGAAGAGTTCAAAGCTCAATATACGGAAGAAGAACTTGCCGAGAAGGCCGAAATGATAGCTCGCTACTACCACGATGTGGAAAAAGAAGCGATGCGTCGTGCCATCCTCGACGAAGGCAAACGCCTCGATGGGCGTAAGACCACGGAGATCCGTCCGATATGGATCGAGACCGACTGCCTACCCGGCCCGCATGGCTCAGCTATATTCACTCGTGGTGAGACGCAGTCGCTTACGACCGTTACGCTTGGTACGAAGAGCGACGAAAAGCTCGTGGACGATGTACTCAATTATACGAAAGAGCGATTCCTGCTGCACTACAACTTCCCTCCTTTCTCTACAGGTGAAGCCCGTCCCCAACGCGGTGTAGGCCGCCGCGAGATCGGTCATGGCAATTTGGCGCATCGCGCCCTCAAGCGTATGATACCGACGGACTACCCCTATGTGGTACGTGTAATCAGCGACATTCTGGAGTCCAATGGCTCGTCCTCGATGGCCACTGTCTGCGCCGGTACTTTGGCTCTGCGCGATGCCGGTGTACAGATTCGCAAGCCCGTATCCGGCATTGCTATGGGCTTGATCTCAGAGAATCAGGGCAAGAACTACGCCATCCTCTCCGATATTCTCGGTGACGAAGACCATCTCGGCGATATGGACTTCAAGGTAACGGGTACGAAGGACGGTATTACAGCCACGCAGATGGACATCAAGGTGGATGGTCTCAGCTATGAGATTTTGGAGAATGCTCTGGAGCAAGCCAAGCAAGGACGCCTACACATCCTCGGCAAGATCATGGAAGCTCAGCCCGAGACAAGAGATGACCTCAAGCCTCATGCACCGCGTATCGAGAAGATGCATATCGGCAAGGAGTTTATCGGAGCAGTCATAGGCCCGGGCGGAAAGATCATCCAAGGCATACAGGAGAAGAGTGGTGCCACAGTGAACATCGAAGAGGTAGATGGCATGGGTGTCATCGAGATCAGTGGTACGAACAAACCCTGCATCGATGCTGCAATCGGCATGATCAAGGGCATCGTGGCTATGCCGGAAGTCGGAGAAACCTATCCGGGCAAGATCACAAGTGTGATGCCATACGGCTGCTTCGTCGAATTCCTCCCCGGCAAGGAAGGACTTCTGCATATCTCGGAAGTGGATTGGAAACGATTCGAGACCATCGAGGACACCAACCTGAAAGAAGGCGAATCCATCAACGTTAAGCTGCTCGATATAGATCCGAAGACCGGCAAGTTCAAACTCAGCCGCAAGGTGCTACTGGAAAAACCGGAAGGCTACGTGGAGCCTCAGCCGAGAGAGCGGCGTGAGCGGCGTGAAGGAGGACGCGAAGGAGGTCGTAACTTCGAACGTCGTGGTGGTGATCGTGACCACCGCGAGCCTCGTGGC","5.20","-21.45","82252","MLNVVSKTIDLGDGRSIKIETGKLAKQADGAVTVTMGNTVLLATVCAAKDANPGCDFMPLQVEYKEKYSAIGRFPGGFTRREGKASDYEILTCRLVDRALRPLFPDNYHAEVFVNVILFSADGEDMPDALAGLAASAALAVSDIPFNGPISEVRVARVDGRYIVNPTFEQLERADIDLMVGATMDNIMMVEGEMDEVQESEMLEGIRVAHEAIKVQCKAQLELSEAVGKLQKREYSHEVNDEDLRKKVHDECYARAYEVATSGTGKHERGEAFEKIVEEFKAQYTEEELAEKAEMIARYYHDVEKEAMRRAILDEGKRLDGRKTTEIRPIWIETDCLPGPHGSAIFTRGETQSLTTVTLGTKSDEKLVDDVLNYTKERFLLHYNFPPFSTGEARPQRGVGRREIGHGNLAHRALKRMIPTDYPYVVRVISDILESNGSSSMATVCAGTLALRDAGVQIRKPVSGIAMGLISENQGKNYAILSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILENALEQAKQGRLHILGKIMEAQPETRDDLKPHAPRIEKMHIGKEFIGAVIGPGGKIIQGIQEKSGATVNIEEVDGMGVIEISGTNKPCIDAAIGMIKGIVAMPEVGETYPGKITSVMPYGCFVEFLPGKEGLLHISEVDWKRFETIEDTNLKEGESINVKLLDIDPKTGKFKLSRKVLLEKPEGYVEPQPRERRERREGGREGGRNFERRGGDRDHREPRG","818589 816268","In B. subtilis, this enzyme is known to be involved in mRNA degradation, hydrolyzing ss-mRNA in the 3' to 5' direction. It is reported that IF-1, eIF-2, PNPase and ribosomal protein S1 share an RNA-binding motif (see Gribskov, 1992, PubMed: 1383091. In Bacillus subtilis, this protein is necessary for competence development (Luttinger et al., 1996, PubMed: 8825779.TIGR ID: PG0766","polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase)","Cytoplasm","Many hits in gapped BLAST to polyribonucleotide nucleotidyltransferases and polynucleotide phosphorylases. This protein is similar to CT842, a predicted polynucleotide phosphorylase (PNPase), and to BT2563.","
InterPro
IPR001247
Domain
Exoribonuclease
PF01138\"[13-145]T\"[326-457]TRNase_PH
PF03725\"[148-212]T\"[460-532]TRNase_PH_C
PF03726\"[244-323]TPNPase
SSF46915\"[240-324]T3_ExoRNase
SSF55666\"[146-239]T\"[460-553]T3_ExoRNase
InterPro
IPR003029
Domain
RNA binding S1
PF00575\"[624-698]TS1
SM00316\"[626-698]TS1
PS50126\"[628-698]TS1
InterPro
IPR004087
Domain
KH
SM00322\"[555-623]TKH
InterPro
IPR004088
Domain
KH, type 1
PF00013\"[558-618]TKH_1
PS50084\"[556-618]TKH_TYPE_1
InterPro
IPR012162
Family
Polyribonucleotide nucleotidyltransferase
PIRSF005499\"[5-713]TPNPase
PTHR11252\"[146-732]TPNPase
InterPro
IPR012340
Domain
Nucleic acid-binding, OB-fold
G3DSA:2.40.50.140\"[625-698]TOB_NA_bd_sub
noIPR
unintegrated
unintegrated
G3DSA:1.10.10.400\"[227-323]TG3DSA:1.10.10.400
G3DSA:3.30.1370.10\"[555-624]TG3DSA:3.30.1370.10
SSF50249\"[624-704]TNucleic_acid_OB
SSF54211\"[13-145]T\"[325-459]TSSF54211
SSF54791\"[555-631]TSSF54791


","BeTs to 11 clades of COG1185COG name: Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase)Functional Class: JThe phylogenetic pattern of COG1185 is -----qvcebrhuj--olinxNumber of proteins in this genome belonging to this COG is 1","***** PR00681 (Ribosomal protein S1 signature) with a combined E-value of 2.2e-12. PR00681H 641-660 PR00681I 681-699 PR00681F 682-702","Residues 2-128 are 47% similar to a (POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE) protein domain (PD005304) which is seen in O87792_PSEPU.Residues 312-415 are 67% similar to a (NUCLEOTIDYLTRANSFERASE POLYRIBONUCLEOTIDE TRANSFERASE) protein domain (PD111902) which is seen in Q9ZAE1_THETH.Residues 419-537 are 36% similar to a (NUCLEOTIDYLTRANSFERASE TRANSFERASE POLYRIBONUCLEOTIDE) protein domain (PD002075) which is seen in P72659_SYNY3.Residues 626-702 are 58% similar to a (PROTEIN RIBOSOMAL S1 RNA-BINDING 30S REPEAT) protein domain (PD000709) which is seen in Q9Z6R0_BBBBB.Residues 141-288 are 43% similar to a (NUCLEOTIDYLTRANSFERASE POLYRIBONUCLEOTIDE) protein domain (PD005803) which is seen in PNPA_BACSU.","","Thu Jun 14 13:30:56 MDT 2001","","Thu Jun 14 13:30:56 MDT 2001","Thu Jun 14 13:30:56 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:30:56 MDT 2001","Thu Jun 14 13:30:56 MDT 2001","","Tue Jul 17 14:59:18 2007","Wed Apr 18 15:48:24 MDT 2001","Wed Dec 17 11:21:46 2003","Wed Mar 14 16:48:25 MST 2001","Wed Dec 17 11:21:46 2003","Wed Dec 17 11:21:46 2003","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P.gingivalis.","Wed Mar 14 16:48:25 MST 2001","Tue Jul 17 14:59:18 2007","-56% similar to PDB:1E3H SEMET DERIVATIVE OF STREPTOMYCES ANTIBIOTICUS PNPASE/GPSI ENZYME (E_value = 4.0E_120);-56% similar to PDB:1E3P TUNGSTATE DERIVATIVE OF STREPTOMYCES ANTIBIOTICUS PNPASE/ GPSI ENZYME (E_value = 4.0E_120);-52% similar to PDB:2BR2 RNASE PH CORE OF THE ARCHAEAL EXOSOME (E_value = 7.0E_16);-52% similar to PDB:2C37 RNASE PH CORE OF THE ARCHAEAL EXOSOME IN COMPLEX WITH U8 RNA (E_value = 7.0E_16);-52% similar to PDB:2C38 RNASE PH CORE OF THE ARCHAEAL EXOSOME IN COMPLEX WITH A5 RNA (E_value = 7.0E_16);","","","Residues 13 to 145 (E-value = 1.5e-27) place PG0690 in the RNase_PH family which is described as 3' exoribonuclease family, domain 1 (PF01138)Residues 148 to 212 (E-value = 1.6e-10) place PG0690 in the RNase_PH_C family which is described as 3' exoribonuclease family, domain 2 (PF03725)Residues 244 to 323 (E-value = 2.7e-10) place PG0690 in the PNPase family which is described as Polyribonucleotide nucleotidyltransferase, RNA binding domain (PF03726)Residues 326 to 457 (E-value = 5e-41) place PG0690 in the RNase_PH family which is described as 3' exoribonuclease family, domain 1 (PF01138)Residues 460 to 532 (E-value = 3e-20) place PG0690 in the RNase_PH_C family which is described as 3' exoribonuclease family, domain 2 (PF03725)Residues 624 to 698 (E-value = 1.4e-17) place PG0690 in the S1 family which is described as S1 RNA binding domain (PF00575)","Tue Jul 17 14:59:18 2007","34540549","","","Luttinger,A., Hahn,J. and Dubnau,D. 1996. Polynucleotidephosphorylase is necessary for competence development in Bacillussubtilis. Mol. Microbiol. 19(2): 343-356. PubMed: 8825779. Gribskov M . 1992. Translational initiation factors IF-1 and eIF-2 alpha share an RNA-binding motif with prokaryotic ribosomal protein S1 and polynucleotide phosphorylase. Gene 119(1):107-11. PubMed: 1383091.","","Tue Jul 17 14:59:18 2007","1","","","PG0766" "PG0691","820624","818651","1974","ATGCCACGCTATGCCGGCACCGTCATCCCCCTATTCGGACTGCGCACCCACAAGGATTGGGGCATAGGAGACTTCGGTGCACTCCGCCGTATGGTGGACTGGGCGGCAATGACCGGCCAGCGCATTATACAGCTCCTGCCCATCAACGACACCACTTACACACGCTCCTATCGCGACTCCTATCCATATAATATAGTATCGGTCATCGCCATCCATCCTATCTATGCCGATTTGGATGCGCTACCACGACTGAAGAATAGTGCTCTGATGGCAAAAATGGAGAAGCAGGCCGAAGCACTGAGGGCACTCAAGCAAATGGATTATCCGGCTGTGTTGGCTCTGAAGGAGGAATTTCTGCATGCCCTGTATCGACAGGAAGGGGCGAATGTGATGCGCAAGAAAGCTTTCCGTCAATTCGTCTCAGCAGCGGCCGATTGGTTGGATCCATATGCGGCTTTTTGCCATCTGCGCGACAAGTACGAGGGACTGCCACTCCATCTGTGGCCTGAATATACGTGGGGAAAAAACCAAATCGAACGAATGGCGGTATCTCCCGAACTGAAAACGGAGACCAATTACTATCGCTTCGTACAATTTTTACTCCACGAGCAGCTGCATGCCGTATCGGCCTATGCCGAAGAAAAAGGGATCCTACTCAAAGGAGATATACCGATCGGAGTCAGCCCCAATAGTGTGGAGGTGTGGATGGAACCGTCCCTGTTCGACACGGAGCATGCCGCCGGATCACCTCCGGATCAGTTTTCCGAGAATGGGCAAAACTGGGGTTTTCCCATCTACCGATGGGACGTAATGAGACGAAACGGCTTTGCCTGGTGGCGCAAGCGTTTCGAGAGCATGGCCGACTACTTCAAGGCTTTCCGTATAGATCATATATTGGGCTTTTTCCGTATATGGGAAATCCCTGTCAAGCATGTTTCGGGCTTGTTGGGACATTTCAATCCGGCTATAGCCATGACCGAAAAGGAGATAAAGGAGTACGGCTTCCCGTTCGATGCCCGATTCTGCTCCCTTCCGCTCGTTCATGCAGATGACCTCAAGCAGATTTTCGGACGCTATGCAAGCGAAGTATGCTGTCGATACCTTCGTCCGTTCGATTCGGATTATTATACGCTGGCGACGAAGAATTTCTATCAGACCGATATAGCAGCGTTAGATCCTACAGCCGTTGTCGGAGGAGAGGACACGATCAGAGGTTTGATGCGTGTAGCCACAGAAGTATGTTTCGTAATAGAATCAGGCAAGCCCGGGGCCTTCCATCCACGCATCCATTTCGAAAAGTCTTTTCGCTATGCTCATCTGAGCTTGGAGGAAAAGAAAGCTTGGCAGCGTCTGTCGGACGACTACTTCCACAAGCGGAACGATGACCTGTGGAAGCAAGAGGCACTGTCGCGGCTGATACCGCTGCTTTCCTCCACGGATATGCTCGTCTGTGTAGAGGATCTGGGAATGATACCCCCTGCAGTGCCTGTCGTAATGGAACAGTTGCAACTGCTATCCCTCATTTTGGAAAGAATATCCAAAGAGCCGGGACAGGACTTTGCCGATATGAGTCGGCAGCCCTATTGTTCGGTATGTACCACCTCTACGCACGACATGGCGCCTCTGCGTCTTTGGTGGCAAGAGAACGAACTGCCTCGCCGGCACTACTATTCCATGATCCTTGGAGAGAAAGGTACTGCACCGGAGACATGTACGCCGGAGACGGCTCGCCGAATCCTTCGGCAGCATCTGCTGTCCACTTCCATGCTGGCTATTTTCCCATTAGCCGATTGGCTGTCGCTATCGGGTGAGTTGCAAGGAATTGTTGCGCCCGAGGACGAACAGATCAACAAACCGGAGATTTCCGATCACTACTGGCGTTATCGGATGCCTATTTCTATCGAAAGCCTTTCTGAAGACTATCGGGAGCTGAACGAATCGATAGCCTCCCTCATTCGCACCTCAGGCAGAGGA","6.50","-5.54","76011","MPRYAGTVIPLFGLRTHKDWGIGDFGALRRMVDWAAMTGQRIIQLLPINDTTYTRSYRDSYPYNIVSVIAIHPIYADLDALPRLKNSALMAKMEKQAEALRALKQMDYPAVLALKEEFLHALYRQEGANVMRKKAFRQFVSAAADWLDPYAAFCHLRDKYEGLPLHLWPEYTWGKNQIERMAVSPELKTETNYYRFVQFLLHEQLHAVSAYAEEKGILLKGDIPIGVSPNSVEVWMEPSLFDTEHAAGSPPDQFSENGQNWGFPIYRWDVMRRNGFAWWRKRFESMADYFKAFRIDHILGFFRIWEIPVKHVSGLLGHFNPAIAMTEKEIKEYGFPFDARFCSLPLVHADDLKQIFGRYASEVCCRYLRPFDSDYYTLATKNFYQTDIAALDPTAVVGGEDTIRGLMRVATEVCFVIESGKPGAFHPRIHFEKSFRYAHLSLEEKKAWQRLSDDYFHKRNDDLWKQEALSRLIPLLSSTDMLVCVEDLGMIPPAVPVVMEQLQLLSLILERISKEPGQDFADMSRQPYCSVCTTSTHDMAPLRLWWQENELPRRHYYSMILGEKGTAPETCTPETARRILRQHLLSTSMLAIFPLADWLSLSGELQGIVAPEDEQINKPEISDHYWRYRMPISIESLSEDYRELNESIASLIRTSGRG","821341 818651","TIGR ID: PG0767","4-alpha-glucanotransferase (amylomaltase)","Cytoplasm","Gapped BLAST shows numerous hits to 4-alpha-glucanotransferases including 35% similarity to gb|AAB86444 in Arabidopsis thaliana and 33% similarity to gb|AAF39223 in Chlamydia muridarum. This sequence is similar to CT087, CP0431 and BT2146.","
InterPro
IPR003385
Family
Glycoside hydrolase, family 77
PF02446\"[9-652]TGlyco_hydro_77
InterPro
IPR013781
Domain
Glycoside hydrolase, catalytic core
G3DSA:3.20.20.80\"[2-658]TGlyco_hydro_cat
noIPR
unintegrated
unintegrated
SSF51445\"[2-657]TSSF51445


","BeTs to 6 clades of COG1640COG name: 4-alpha-glucanotransferaseFunctional Class: GThe phylogenetic pattern of COG1640 is -----q-ce-rh----o-in-Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 105-225 are 31% similar to a (4-ALPHA-GLUCANOTRANSFERASE TRANSFERASE AMYLOMALTASE) protein domain (PD186475) which is seen in MALQ_SYNY3.Residues 356-657 are 33% similar to a (PUTATIVE 4-ALPHA-GLUCANOTRANSFERASE) protein domain (PD142935) which is seen in O22198_ARATH.Residues 230-334 are 50% similar to a (4-ALPHA-GLUCANOTRANSFERASE TRANSFERASE AMYLOMALTASE) protein domain (PD005929) which is seen in O22198_ARATH.Residues 6-81 are 44% similar to a (4-ALPHA-GLUCANOTRANSFERASE TRANSFERASE AMYLOMALTASE) protein domain (PD142927) which is seen in O22198_ARATH.Residues 115-225 are 28% similar to a (PROTEIN ORF PUTATIVE KINASE) protein domain (PD000146) which is seen in MALQ_CLOBU.","","Thu Jun 14 13:31:57 MDT 2001","","Thu Jun 14 13:31:57 MDT 2001","Thu Jun 14 13:31:57 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:31:57 MDT 2001","Thu Jun 14 13:31:57 MDT 2001","","","Wed Mar 22 12:04:46 MST 2000","Wed Dec 10 16:46:49 2003","Wed Jan 3 12:35:56 2001","","Wed Dec 10 16:46:49 2003","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Mar 9 16:00:32 MST 2001","-46% similar to PDB:1CWY CRYSTAL STRUCTURE OF AMYLOMALTASE FROM THERMUS AQUATICUS, A GLYCOSYLTRANSFERASE CATALYSING THE PRODUCTION OF LARGE CYCLIC GLUCANS (E_value = 3.3E_38);-46% similar to PDB:1ESW X-RAY STRUCTURE OF ACARBOSE BOUND TO AMYLOMALTASE FROM THERMUS AQUATICUS. IMPLICATIONS FOR THE SYNTHESIS OF LARGE CYCLIC GLUCANS (E_value = 3.3E_38);-46% similar to PDB:1FP8 STRUCTURE OF THE AMYLOMALTASE FROM THERMUS THERMOPHILUS HB8 IN SPACE GROUP P21212 (E_value = 3.3E_38);-46% similar to PDB:1FP9 STRUCTURE OF AMYLOMALTASE FROM THERMUS THERMOPHILUS HB8 IN SPACE GROUP C2 (E_value = 3.3E_38);-47% similar to PDB:1TZ7 Aquifex aeolicus amylomaltase (E_value = 3.6E_32);","","","Residues 9 to 652 (E-value = 4.4e-116) place PG0691 in the 4a_glucanotrans family which is described as 4-alpha-glucanotransferase (PF02446)","Fri Mar 9 16:00:32 MST 2001","34540550","","","","","","1","","","PG0767" "PG0692","822472","821369","1104","ATGAGAAGAATTGTCACCATCATTTCCCTTTTACTTTCTGTTTATCTCTTGTCGGCGCAAGATTCGAGTACGCTGCTGCGCCTCGTCAGGATGCCCCTCAAGAGTATTACGACAGAATACCCTAATAAGACAGGACAGGTGATCAATGACGAAGCCGATGCCCGACTGACCCCCTCTCAGTTGCACCCCGTTTTCTTTGGCTCATTCGATTGGCACAGCAGCGTACACAGCCACTGGATGCTGGTACATACGCTTCGCATCGTACCCGATTTAGCCATGATGGATAGCATCGTCGCTGCTCTCGATCATTCGTTTACGGCGGAGAAGCTCGCAGCCGAAACGGCCTATTTCGACAGACCCGGGGGAGCGACGTTCGAGCGTACCTACGGATGGGCTTGGCTTTTGAAATTGGATGAGGAATTGCTTCGGCTATCTCAGGATGCTGCCGTGTCTTCGCACTTGGCAAGCCGTGCGGCAGAATGGCATCGGCATATGTCCCCTCTCTCTCGGACTATCGTAGCACGGTGGAAAGCTCATCTCTCCAAGATGACCTACGCCGATAGGATCGGTACGCACTCCAACTCGGCTTTCGCCATGGCCTTTGCCTACGACTGGGCTGTTGCTATGGGAGACAGCTGTTTTCGGGATTCACTCCGCCAAAAAGCATTGGACCTCTTCGCCAAAGACCGAACCATACCGGCTGAGTGGGAACCTAATGCCACGGACTTCTTTTCTCCTTCGCTGCAGGAAGCCGATCTGATGAGACGAATCATGCCTGCCGATACTTACCGGCAATGGTTCGAACAGTTTTTTACGACCGAGGGATTGGAACGTCTGTGTACACCTCCCATCGTATCCGATCTGAACGACTATCACATAGTCCATCTCGTAGGACTTTCCTTTTCCAGAGCGTGGTGTATGGGAGCTATAGCGAGGGCTTTACCGGCGAATGATGGCATCGGAATGCGGATGCGACAAGCAGCCAAGCGGCATTACGAAGAGGGCATGAAGCAGATATTCAATAGCAATTATGGTGGCGATCATTGGCTGGGGAGCTTTGCCGCCTACGCCTATGAGGAGATAAAGTGGCTGATCGATCGGCTG","6.90","-0.52","42006","MRRIVTIISLLLSVYLLSAQDSSTLLRLVRMPLKSITTEYPNKTGQVINDEADARLTPSQLHPVFFGSFDWHSSVHSHWMLVHTLRIVPDLAMMDSIVAALDHSFTAEKLAAETAYFDRPGGATFERTYGWAWLLKLDEELLRLSQDAAVSSHLASRAAEWHRHMSPLSRTIVARWKAHLSKMTYADRIGTHSNSAFAMAFAYDWAVAMGDSCFRDSLRQKALDLFAKDRTIPAEWEPNATDFFSPSLQEADLMRRIMPADTYRQWFEQFFTTEGLERLCTPPIVSDLNDYHIVHLVGLSFSRAWCMGAIARALPANDGIGMRMRQAAKRHYEEGMKQIFNSNYGGDHWLGSFAAYAYEEIKWLIDRL","822496 821369","TIGR ID: PG0768","conserved hypothetical protein","Cytoplasm","Gapped BLAST shows two strong hits, 38% similarity to a hypothetical protein in Streptomyces coelicolor (emb|CAB56667) and36% simiarity to emb|CAB75190 in Campylobacter jejuni.","
noIPR
unintegrated
unintegrated
signalp\"[1-19]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 13:32:38 MDT 2001","","Thu Jun 14 13:32:38 MDT 2001","Thu Jun 14 13:32:38 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:32:38 MDT 2001","Thu Jun 14 13:32:38 MDT 2001","","","Wed Jan 3 13:53:44 2001","Wed Jan 3 13:53:44 2001","Wed Jan 3 13:53:44 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Jun 14 13:32:38 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Jun 14 13:32:38 MDT 2001","34540551","","","","","","1","","","PG0768" "PG0693","824268","822649","1620","ATGGCCAATCAGATTATGATAGAAGCGGCCGAAACGTTCAATATGAGTCCTACATGGGATCTGCTCGGTGCTTTTCCTTTACCTCCGGTTACTCAGGAGTGGCAGACCTATGAGGTGATCTTCTACGGTGGCGGTTCATATTCGATATTCAATATCGTGGTGAATGATCATCCCGTTTATATCGACAATTTGGAGGTTTACCAGATCGATCAGTATGTATCCACACCTAAGGCACTGCCGCACACCAATTACAAAGGCAGTAGCTTCGATGCCAACTGGACCAAAGTAGCAGAAGCCGAAAGCTATTTGCTGGATGTCTATTCTCGCAGTGCCAATGGAGCGGATGTAGAATATCTGTTGGAAGCACAGGCTGTAAATGATACGACTTTCAACGTGACGAATGCCGAGTCGGGCAAAACTTATTACTACGAAGTACGTGCTCGTAAGGGAACTCATGTATCCATCGTATCTAAAGCCATGGAGGTGTTCGATCTCGAAGTGCCCAAGATGAATCCGGTGAATAACCTCACGGCATCCGCAGAAGATGTGACCTATACCGCTTCATGGAACGCTGTACCTTCAGCCGAACGCTACAACTATTTCGCTCGCTTCAAGCGTACAGCTGCCGCTGACGGCGCATTCTTTGTTACCGACGAAAACTTCGATGGAATAAAGACTCCTACCGGAGAACTGACAGGCTGGACGATAGAAAATCCGTCTACCTATACGTACGATGAGGTTTACCTGAGCGATCTGGTACAAGCCGGCTGGAAAGGGACTAACTATGCTCCCTACACGGACTATATCTGCTTGGATGCATGGCAGTACATTTTCAATCACACCGATGCAGGCCTGATCTCACCGGAGTTGGATCTTTCCAAAGATGGCGGGAAGATAGACTTGAGTGTGAAGCTCTATGCTACGAAATACGTCGGCGACGATGGCCAGGGCAATCAGGTGGAAGGCTATACGCGAGCAGCGATCGCCCTCTTCCAATACGACGAGACTGTCGGAGACTATGTGCAGTCAGAGCTGCTGTATCTGAATGAATCGGACGGACTGGTCGATCAGTGGAAGGTATTCAACGTTTCTTTGACCAAGGGAACGGAGCGTTCGGTAATCGGCATATATGCCGTATATGCACCGGAAAATCTCTATGTCGATGATCTCAAGATCACTCAAAAGTATAAGGCCGGCGAAAGCCTGCCGGATCCTTTCCTCTTCAAGAGATATTTGGAAAGCGAATCGATCGATGTAAATGTGCCCGAGCGAGTATTCAAGAATGAAATGTTCCATCAGGTGGCTGCCGTGAAGCATGGAGGCCAAGGAGTACAATATCAAGGTTACAAAACGACTCCTTTCAGTCCGCTCCAATCTTTCGGAGTCTGTCCTTCTCCCACGAATCTGACTCCCTCGGTAAGCATGGCCAAGGCTATGGTACAGGTTATCGGAGATAATATCCATATCGACAATGTTCATGGCGAGGCTGTAAGTATTTATGATTTCAGTGGTCGTTTGGTTTATAGCGATTACTCGGGCAACGGGTCTATTGTTGTCAACTTAGGCCAGGGCGGAACGTTCATCGTCAAAGTGGGTAATCGCTCTATGAAGCTGACTTAC","4.40","-27.12","60142","MANQIMIEAAETFNMSPTWDLLGAFPLPPVTQEWQTYEVIFYGGGSYSIFNIVVNDHPVYIDNLEVYQIDQYVSTPKALPHTNYKGSSFDANWTKVAEAESYLLDVYSRSANGADVEYLLEAQAVNDTTFNVTNAESGKTYYYEVRARKGTHVSIVSKAMEVFDLEVPKMNPVNNLTASAEDVTYTASWNAVPSAERYNYFARFKRTAAADGAFFVTDENFDGIKTPTGELTGWTIENPSTYTYDEVYLSDLVQAGWKGTNYAPYTDYICLDAWQYIFNHTDAGLISPELDLSKDGGKIDLSVKLYATKYVGDDGQGNQVEGYTRAAIALFQYDETVGDYVQSELLYLNESDGLVDQWKVFNVSLTKGTERSVIGIYAVYAPENLYVDDLKITQKYKAGESLPDPFLFKRYLESESIDVNVPERVFKNEMFHQVAAVKHGGQGVQYQGYKTTPFSPLQSFGVCPSPTNLTPSVSMAKAMVQVIGDNIHIDNVHGEAVSIYDFSGRLVYSDYSGNGSIVVNLGQGGTFIVKVGNRSMKLTY","824268 822649","TIGR ID: PG0769","hypothetical protein","Outer membrane, Extracellular","No significant hits.","
InterPro
IPR003961
Domain
Fibronectin, type III
PF00041\"[73-154]Tfn3
SM00060\"[73-154]TFN3
PS50853\"[72-163]TFN3
InterPro
IPR008957
Domain
Fibronectin, type III-like fold
SSF49265\"[74-163]TFN_III-like


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Jan 3 13:55:46 2001","Wed Jan 3 13:55:46 2001","Wed Jan 3 13:55:46 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","-44% similar to PDB:1QR4 TWO FIBRONECTIN TYPE-III DOMAIN SEGMENT FROM CHICKEN TENASCIN (E_value = );","","","No significant hits to the Pfam 11.0 database","","34540552","","","","","","1","","","PG0769" "PG0694","824666","824253","414","ATGCAAAAAGCAAAGAACGATTACGGCACAGTAGTCAGTGTTTTGAAAGAAGACTTCCATGGCTTTGCGACAGGCTCGATAGGTGCGCCTGATCTGAATACGGTACTTACCTATGCCTTCCCGGGCGAATGCGAATATCCCTGGATTAACTTCAAACCGGGTTATACCCAGCAACAGGGTTGGGGTGGAGCCAATGTATGGCAGGCCGGTGGTACTGTTTGCCTCAATGCCGATGGAGAGAATTTCTCTCACCTGAATACGCCTATGCTCAACGTTTCCGGCTATCAGAACATTGCCATCGTTCGCTTCGATGGAGTATCTGATTCTCTCTTCTCCTGCTTGATTCGGGAAATCAGAACATTGCCATCGTTCGCTTCGATGCCCGTACGGCGGAAGGAATGGCCAATCAGATTA","6.50","-0.67","15279","MQKAKNDYGTVVSVLKEDFHGFATGSIGAPDLNTVLTYAFPGECEYPWINFKPGYTQQQGWGGANVWQAGGTVCLNADGENFSHLNTPMLNVSGYQNIAIVRFDGVSDSLFSCLIREIRTLPSFASMPVRRKEWPIRL","824855 824253","TIGR ID: PG0770","hypothetical protein","Periplasm, Extracellular","No significant hits.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 13:33:42 MDT 2001","","Thu Jun 14 13:33:42 MDT 2001","Thu Jun 14 13:33:42 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:33:42 MDT 2001","Thu Jun 14 13:33:42 MDT 2001","","","Wed Jan 3 13:58:36 2001","Wed Jan 3 13:58:36 2001","Wed Jan 3 13:58:36 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Jun 14 13:33:42 MDT 2001","-67% similar to PDB:2BS7 CRYSTAL STRUCTURE OF F17B-G IN COMPLEX WITH CHITOBIOSE (E_value = );-67% similar to PDB:2BS8 CRYSTAL STRUCTURE OF F17B-G IN COMPLEX WITH N-ACETYL-D-GLUCOSAMINE (E_value = );-57% similar to PDB:1I5P INSECTICIDAL CRYSTAL PROTEIN CRY2AA (E_value = );-62% similar to PDB:1OIO GAFD (F17C-TYPE) FIMBRIAL ADHESIN FROM ESCHERICHIA COLI (E_value = );-39% similar to PDB:1Y4W Crystal structure of exo-inulinase from Aspergillus awamori in spacegroup P21 (E_value = );","","","No significant hits to the Pfam 11.0 database","Thu Jun 14 13:33:42 MDT 2001","34540553","","","","","","1","","","PG0770" "PG0694.1","824665","824925","261","ATGCTCGGTCGAACCGATATTTCAACTTTCCCAAGGCTGAAACTCGGTTTTTGGGGAGAGGTCACTTTGACCTTTCCGGCAGTTTGCGACGCTGCCGAAATAGTCCTGCCGGCTAACTGGGCAGACATGTCTGTGGCGGCAAACAATGATAATGCCGCCATTAACACAAATAATGTAAATTTCTTACACATAAGTTCTTATATCCGGATTTTGGTGACTACAATCCCGCTTCGGTGTGGCAAAACCCGTGACAATCCACAT","","","9569","MLGRTDISTFPRLKLGFWGEVTLTFPAVCDAAEIVLPANWADMSVAANNDNAAINTNNVNFLHISSYIRILVTTIPLRCGKTRDNPH","","Orf predicted by Glimmer. Likely not a gene.TIGR ID: PG0771","hypothetical protein","Cytoplasm","No hits found.","
noIPR
unintegrated
unintegrated
signalp\"[1-31]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","Wed Jan 3 14:02:15 2001","Wed Jan 3 14:02:45 2001","Wed Jan 3 14:00:55 2001","Wed Jan 3 14:00:55 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540554","","","","","","1","","","PG0771" "PG0695","827032","825791","1242","ATGAAGCCCTATCAGAAACTAACGATTGTCATTTTTCTTCTTTTAGAGTCGTACTTCGCTGTGTCGGCTCAGTACGAGAATTTCAAACAAAAGGTTTTCACCGGTTCAGCAGAGGTATTTCTCTCATTGGGGCAGGATATTCATTCCGGTAGAGCAACAGCCGAACAGGACTGGGAAAAGCTGTTCTCCACCATGGGATACACGAAGTATTTGAACAACCCTAAAGGCGAAATGATCAAAAGAGAGCTTAAAGAAGCCATGCTACTTGCTTTTGATCCTGACCGGATAGCAGAAGCGGACAGCATCCTGAAACATCCTGCTACAATAACGAATATGCCTCTTGTCCTCAGACAAAATATCTGTCGGCTCGCCCGTAAACGAGAAGAAGCCGACAGTTTTCTTCTGCATACGGATTTTCTCACCCTATTGTACAGGGCAAATGAAAAGACAAAAAAATACTTACCCGAACGAGCCTGGTCATCCAATCCGCTATTGAACGACCTCTTTCTGATTGCCACTATTCCCGATGCCAGTGTACGCGATCATGCTATTTTCCTTGACCTGAATCTCGCGCTTTCGATGCAAGAAGAAGAGCTTGTAGACCTATTTACTCACGAGTTTTTCCACAACTATCGCGAAATGGCTTATCAAGGTTCATCCGGAGATTCTTTTTTGAATGCTTTCGATCTTTTCCAGAACGAAGGAATAGCAGATCTGATTGACAAAAAAAGAAACGACGACAAAATCATGCAATTCTTCGGCGACGAGTTCGTAAAAGCCTATAAAGAAGAGTTGGCCAATGCACCGAATACTTTAGCCCGAATCGACTCCCTGTCCATCGCTTTCGATCCGAATACCTCCCAAGACGGGGAGTATAAACCCGTGGCTGATCTTGTGCTCTTCGGAGGGCATCCCGTCGGTTATTATATGGCAAGCCTTATACAAGAGCAGGGATATATGAGGGAACTCATTGACAATTATGACAATCCTGTAGTGTTTGCAACGCTGTACAATCAGGCTGCAAGAAAAAAGAATGCAGTATCGAAAGGGAGAGAATATATCCTCTCCGATCATCTTATCGATCACTTAAAGCAGGCCTATAAAAAACAGGAGGGAAAGCAAAACGACATAAAGGAAGATAGAAGCACAACCCTTAGTGGTATCGCCAACCGCTGCAATTTCCACCGTCCCGTATTACGATTCCTTGGCATTGAGGTTTTTACTATATTTGCATCCTACAAA","5.90","-6.65","47585","MKPYQKLTIVIFLLLESYFAVSAQYENFKQKVFTGSAEVFLSLGQDIHSGRATAEQDWEKLFSTMGYTKYLNNPKGEMIKRELKEAMLLAFDPDRIAEADSILKHPATITNMPLVLRQNICRLARKREEADSFLLHTDFLTLLYRANEKTKKYLPERAWSSNPLLNDLFLIATIPDASVRDHAIFLDLNLALSMQEEELVDLFTHEFFHNYREMAYQGSSGDSFLNAFDLFQNEGIADLIDKKRNDDKIMQFFGDEFVKAYKEELANAPNTLARIDSLSIAFDPNTSQDGEYKPVADLVLFGGHPVGYYMASLIQEQGYMRELIDNYDNPVVFATLYNQAARKKNAVSKGREYILSDHLIDHLKQAYKKQEGKQNDIKEDRSTTLSGIANRCNFHRPVLRFLGIEVFTIFASYK","827032 825791","TIGR ID: PG0774","hypothetical protein","Cytoplasm, Periplasm","This sequence corresponds to gi:34396870 in Genbank.","
InterPro
IPR006025
Binding_site
Peptidase M, neutral zinc metallopeptidases, zinc-binding site
PS00142\"[202-211]?ZINC_PROTEASE


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Jan 3 14:06:18 2001","Thu Mar 3 14:08:08 2005","Wed Jan 3 14:06:18 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 3 14:08:08 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540557","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Thu Mar 3 14:08:08 2005","","1","","","PG0774" "PG0696","829244","827526","1719","ATGGCTAATTATTATACAGACACCCCGCAGCTCAGGTATCACCTGAATCACCCGCTGATGCGTCGCATCGTGGAGTTGAAAGAGAGAAGCTATACGCAGAAAGAAGAGTTCGACTATGCTCCGCTCAACTTCGAAGATGCCATGGACAGCTACGAGCAGGTGCTCGAAATCGTTGGCGAGATCTGTGGCGATATCATCGCACCCAACGCTGAAAGCGTAGATCACGAAGGGCCTACGCTCCATGACGGACGCGTTGCGTATGCAGCCGGCACGAAGCAGAACCTCAAAGCTATTACAGATGCCGGCCTGATGGGTATTTCCATGCCCCGCCGTTATGGCGGTCTCAATTTCCCGATCACCCCTTATATCATGGCTGCAGACATTGTATCGCGTGCCGATGCAGGCTTTGAGAATATCTGGGGATTGCAGGACTGTGCTGAGACTCTCTACGAATTTGGCAATGAAGACCAGCGCGAGCGTTTCATTCCTCGCGTTTGTGCCGGTGAGACCATGTCTATGGACCTGACCGAACCGGATGCCGGATCAGACCTGCAGGCTGTCATGCTGAAAGCTACTTATTCCGAAGCTGACGGATGCTGGTATCTAAATGGGGTAAAGCGCTTCATCACCAATGGTGACTCACATATCCACCTCGTATTGGCACGAAGCGAAGAAGGTACCACTGATGCTCGTGGTCTCTCTATGTTCATCTATGATCATCGTGATGGCGGAGTGACGGTACGTCGTACGGAAAACAAAATGGGTATTAAGGGAGCTCCTACTTGCGAACTGGTCTTCAAGAATGCCAAGGCAGAACTTTGCGGAGACCGTAAGATGGGACTTATCAAGTACGTAATGGCTCTGATGAATGGTGCTCGTCTGGGTATCATGGCACAGTCGGTAGGTCTGTCGGAAGCAGCTTTCCGTGAAGCTCACTCCTATGCCCTCGATCGTAAGCAGTTCGGTAAGCCTATTATTGCTTTTGCTCCCGTTTACGAGATGCTCTCTCTCATTCGTGCCAAGGCAGATGCTTCGCGAGCCATGCTGTACGAAACCAGCCGCTTTGTCGATATGTACAAAGTGCTGGAGGATATCAGCCACGAGCGCAAATTGACTTCCGAAGAACGTGCGGAAATGAAGCATTTCAGCCGTCTGGCAGATGCCTATACCCCTATGGGCAAAGGAATGACCTCCGAGTTTGCCAATCAGAATGTCTATGACTGTGTTCAGATCCACGGTGGTAGCGGCTTCATGAAGGACTACACCTGCGAACGTCTCTACCGCGATGTACGTATCACAAACATCTACGAAGGTACCACACAGTTGCAGGTCGTAGCAGCCATTCGCCATATCACGACAGGCACTTATATCGCTCGTATCCGTGAAGAGTACCAGCAGACAGAAGTTAAGCCAGAGTTGCAACCGATGAAAGAGGCTCTGGCTCGTATGACCGACCGTGCCGAAGCACTGATAGCATTCGTAACAGAACAGAAAGACCAGGAGCTGCTCGATTTCCAAGCACGTCGGCTTGTAGAGATGACTGCTCATGCAGTCTTCGGCCATCTGCTGATGTTGGCTGCCAATGACGACGATTCATTCCGTCAGTCGGCAGAGGTATATCTACGTTACGGTCAGGCTGAGCAGGAGAAGATCGACAGCTACGTGCGCGCTTTCCGTCCGGAAGAACTCACATTCTATAGCCGTTGCTCTCGTCCCGAA","5.30","-15.98","64963","MANYYTDTPQLRYHLNHPLMRRIVELKERSYTQKEEFDYAPLNFEDAMDSYEQVLEIVGEICGDIIAPNAESVDHEGPTLHDGRVAYAAGTKQNLKAITDAGLMGISMPRRYGGLNFPITPYIMAADIVSRADAGFENIWGLQDCAETLYEFGNEDQRERFIPRVCAGETMSMDLTEPDAGSDLQAVMLKATYSEADGCWYLNGVKRFITNGDSHIHLVLARSEEGTTDARGLSMFIYDHRDGGVTVRRTENKMGIKGAPTCELVFKNAKAELCGDRKMGLIKYVMALMNGARLGIMAQSVGLSEAAFREAHSYALDRKQFGKPIIAFAPVYEMLSLIRAKADASRAMLYETSRFVDMYKVLEDISHERKLTSEERAEMKHFSRLADAYTPMGKGMTSEFANQNVYDCVQIHGGSGFMKDYTCERLYRDVRITNIYEGTTQLQVVAAIRHITTGTYIARIREEYQQTEVKPELQPMKEALARMTDRAEALIAFVTEQKDQELLDFQARRLVEMTAHAVFGHLLMLAANDDDSFRQSAEVYLRYGQAEQEKIDSYVRAFRPEELTFYSRCSRPE","829244 827526","TIGR ID: PG0775","acyl-CoA dehydrogenase (coenzyme A dehydrogenase)","Cytoplasm","Gapped BLAST shows several hundred hits to acyl-CoA dehydrogenases including 35% similarity to gb|AAB09615 and emb|CAB14346 in Bacillus subtilis, 33% simiarity to gb|AAG05020 in Pseudomonas aeruginosa and 34% similatiy to dbj|BAB07518 in Bacillus halodurans.This sequence is similar to BT1806.","
InterPro
IPR006089
Family
Acyl-CoA dehydrogenase
PS00073\"[410-429]?ACYL_COA_DH_2
InterPro
IPR006090
Domain
Acyl-CoA dehydrogenase, type 1
PF00441\"[282-452]TAcyl-CoA_dh_1
InterPro
IPR006091
Domain
Acyl-CoA dehydrogenase/oxidase, central region
G3DSA:2.40.110.10\"[171-285]TAcyl_CoA_DH/ox_M
PF02770\"[172-224]TAcyl-CoA_dh_M
InterPro
IPR009075
Domain
Acyl-CoA dehydrogenase/oxidase C-terminal
SSF47203\"[283-454]TAcylCoADH_C_like
InterPro
IPR009100
Domain
Acyl-CoA dehydrogenase/oxidase, middle and N-terminal
SSF56645\"[49-277]TAcylCoA_dehyd_NM
InterPro
IPR013764
Domain
Acyl-CoA dehydrogenase, type1/2, C-terminal
G3DSA:1.20.140.10\"[289-456]TAcylCoA_DH_1/2_C
InterPro
IPR013786
Domain
Acyl-CoA dehydrogenase/oxidase, N-terminal
G3DSA:1.10.540.10\"[49-171]TAcylCoA_DH/ox_N
noIPR
unintegrated
unintegrated
PTHR10909\"[129-360]T\"[378-451]TPTHR10909
PTHR10909:SF10\"[129-360]T\"[378-451]TPTHR10909:SF10


","BeTs to 4 clades of COG1960COG name: Acyl-CoA dehydrogenasesFunctional Class: IThe phylogenetic pattern of COG1960 is A-------EBR----------Number of proteins in this genome belonging to this COG is 2","***** IPB001552 (Acyl-CoA dehydrogenase) with a combined E-value of 7.3e-43. IPB001552B 197-222 IPB001552C 244-284 IPB001552D 296-338 IPB001552E 393-447","Residues 305-443 are 35% similar to a (DEHYDROGENASE PROTEIN ACYL-COA OXIDOREDUCTASE) protein domain (PD000558) which is seen in ACDB_BACSU.Residues 172-281 are 44% similar to a (DEHYDROGENASE PROTEIN ACYL-COA OXIDOREDUCTASE) protein domain (PD000396) which is seen in O53666_MYCTU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Jan 3 14:27:21 2001","Mon Dec 8 16:18:38 2003","Wed Jan 3 14:08:39 2001","Tue Apr 3 14:44:00 MDT 2001","Tue Apr 3 14:44:00 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 93-443 share 33% identity with PG0958, butyryl-CoA dehydrogenase.","Tue Apr 3 14:44:00 MDT 2001","Tue Apr 3 14:44:00 MDT 2001","-100% similar to PDB:2OKU The crystal structure of the acyl-CoA dehydrogenase family protein from Porphyromonas gingivalis (E_value = 5.3E_69);-51% similar to PDB:1BUC THREE-DIMENSIONAL STRUCTURE OF BUTYRYL-COA DEHYDROGENASE FROM MEGASPHAERA ELSDENII (E_value = 1.4E_40);-50% similar to PDB:2DVL Crystal structure of project TT0160 from Thermus thermophilus HB8 (E_value = 4.0E_40);-47% similar to PDB:1WS9 Crystal structure of project ID TT0172 from Thermus thermophilus HB8 (E_value = 2.4E_37);-47% similar to PDB:2CX9 Crystal structure of acyl-CoA dehydrogenase (E_value = 2.4E_37);","","","Residues 175 to 274 (E-value = 7.4e-19) place PG0696 in the Acyl-CoA_dh_M family which is described as Acyl-CoA dehydrogenase, middle domain (PF02770)Residues 282 to 452 (E-value = 1.7e-41) place PG0696 in the Acyl-CoA_dh family which is described as Acyl-CoA dehydrogenase, C-terminal domain (PF00441)","Mon Dec 8 16:18:38 2003","34540558","","","","","","1","","","PG0775" "PG0697","830275","829259","1017","ATGAACAATCTTTTTGTATATCTCGAAATAGAGGCCGGCGTCGTTCAGGACGTAAGTCTCGAATTGCTGACCAAAGGCCGCTCATTGGCTTCTACCTTGGGCTGCAGACTGGAAGCCATTGCTATCGGCAAATCCATTGATGGCGTTGCCGAACAGGTATTTCCTTACGGAGTGGACAAATTGCACGTGTTCGAAGATGATCGCTTGGAACATTATCTGACACTCCCCTTCACTTCTATTGTGACGAAGTTCTTCGAAGAAGAAAAACCTCAAATCGCTTTGCTTGGTGCCACTTCTGTTGGACGTGACCTCGGTCCCCGTGTTTCATCCGCATTGGGTAGCGGTCTTACAGCAGACTGTACCTCCCTTGAAATAGGCGATCATGAAGACAAGAAGGAAGGAAAGGTTTACAAGAATCTGCTCTATCAGATCCGTCCCGCATTCGGTGGAAATATCGTAGCCACTATCATCAATCCCGATTGCCGTCCACAGATGGCTACAGTACGGGAAGGCGTAATGAAGAAAGAAATTCTTTCAGCAGATTACAAAGGCGAAGTTGTTCGTCATTCTGTAGCTGATTATGTCAAAGCCGAAGACTTCGCTGTAAACATTATTGAGCGTCATATAGAAGCAAGCAAATCCAACCTCAAGGCTTCACCCATTGTCGTTGCCGGTGGCTACGGAGTCGGAAGCAAGGAAAATTTTGCCCTCTTGCATGATCTTGCATCTGTATTGGGTGGAGAAGTTGGAGCTTCTCGTGCTGCGGTAGATGCTGGTTTTGCCGATCATGACATGCAAATCGGACAGACAGGCATTACCGTTCGTCCCAAGCTCTATATCGCTTGCGGTGTCAGCGGACAAATCCAGCACATCGCCGGTATGCAGGAAAGCTCTATCATCATTGCCATCAACAATGACCCGAATGCTCCTATCAATGCGATTGCCGACTACGTGATTACGGGAACCATCGAAGAAGTGATTCCCAAAATGATTACTTATTACAAGAAGAACAGCAAG","5.30","-8.24","36526","MNNLFVYLEIEAGVVQDVSLELLTKGRSLASTLGCRLEAIAIGKSIDGVAEQVFPYGVDKLHVFEDDRLEHYLTLPFTSIVTKFFEEEKPQIALLGATSVGRDLGPRVSSALGSGLTADCTSLEIGDHEDKKEGKVYKNLLYQIRPAFGGNIVATIINPDCRPQMATVREGVMKKEILSADYKGEVVRHSVADYVKAEDFAVNIIERHIEASKSNLKASPIVVAGGYGVGSKENFALLHDLASVLGGEVGASRAAVDAGFADHDMQIGQTGITVRPKLYIACGVSGQIQHIAGMQESSIIIAINNDPNAPINAIADYVITGTIEEVIPKMITYYKKNSK","830275 829259","Forms a hetrodimer with PG0698, electron transfer flavoprotein beta subunit.TIGR ID: PG0776","electron transfer flavoprotein alpha subunit","Cytoplasm","This sequence is similar to BT1805 as well as to numerous other bacterial electron transfer flavoprotein alpha subunits.","
InterPro
IPR001308
Family
Electron transfer flavoprotein, alpha subunit
PIRSF000089\"[2-339]TElectra_flavoP_a
InterPro
IPR014729
Domain
Rossmann-like alpha/beta/alpha sandwich fold
G3DSA:3.40.50.620\"[2-202]TRossmann-like_a/b/a_fold
InterPro
IPR014730
Domain
Electron transfer flavoprotein, alpha/beta-subunit, N-terminal
PF01012\"[3-198]TETF
InterPro
IPR014731
Domain
Electron transfer flavoprotein, alpha subunit, C-terminal
PF00766\"[213-298]TETF_alpha
PS00696\"[278-304]TETF_ALPHA
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.1220\"[209-337]TG3DSA:3.40.50.1220
PTHR10909\"[1-125]T\"[145-335]TPTHR10909
SSF52402\"[2-211]TSSF52402
SSF52467\"[211-334]TSSF52467


","BeTs to 6 clades of COG2025COG name: Electron transfer flavoprotein alpha-subunitFunctional Class: CThe phylogenetic pattern of COG2025 is a---y-v-Ebr----------Number of proteins in this genome belonging to this COG is 2","***** IPB001308 (Electron transfer flavoprotein alpha-subunit) with a combined E-value of 6.1e-30. IPB001308 271-322","Residues 13-187 are 47% similar to a (ELECTRON TRANSPORT FAD FLAVOPROTEIN) protein domain (PD003495) which is seen in O85692_MEGEL.Residues 215-335 are 47% similar to a (ELECTRON TRANSPORT FAD FLAVOPROTEIN) protein domain (PD002994) which is seen in FIXB_CLOAB.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Mon Dec 8 16:15:13 2003","Wed Jan 3 14:57:08 2001","Mon Dec 8 16:16:38 2003","Wed Jan 3 14:50:59 2001","Tue Mar 27 14:51:18 MST 2001","Tue Mar 27 14:51:18 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 4-328 are 45% similar to PG0960, a predicted electron-transfer flavoprotein alpha-subunit.","Tue Mar 27 14:51:18 MST 2001","Tue Mar 27 14:51:18 MST 2001","-50% similar to PDB:1EFP ELECTRON TRANSFER FLAVOPROTEIN (ETF) FROM PARACOCCUS DENITRIFICANS (E_value = 1.4E_28);-48% similar to PDB:1EFV THREE-DIMENSIONAL STRUCTURE OF HUMAN ELECTRON TRANSFER FLAVOPROTEIN TO 2.1 A RESOLUTION (E_value = 5.4E_28);-48% similar to PDB:1T9G Structure of the human MCAD:ETF complex (E_value = 5.4E_28);-48% similar to PDB:2A1T Structure of the human MCAD:ETF E165betaA complex (E_value = 5.4E_28);-48% similar to PDB:2A1U Crystal structure of the human ETF E165betaA mutant (E_value = 5.4E_28);","","","Residues 3 to 298 (E-value = 1.7e-94) place PG0697 in the ETF_alpha family which is described as Electron transfer flavoprotein alpha subunit (PF00766)","Tue Mar 27 14:51:18 MST 2001","34540559","","","","","","1","","","PG0776" "PG0698","831150","830287","864","ATGAAGATTATCGTTCTTGCTAAACAGGTGCCTGATACCCGTAATGTGGGTAAGGATGCCATGAAAGCCGACGGCACTGTGAATCGTTCCGTCTTGCCGGCTATCTTCAATCCCGAAGACCTCAATGCTTTGGAGCAGGCTCTGCGTGTCAAGGAAACTATGCCTGATACGACCGTTCATATTCTCACGATGGGACCTCCTCGTGCAGCAGACATCATACGCGAAGCCATGTATCGTGGTGCCGATGGTGGCTACTTGCTTACAGACAAAGCTTTTGCCGGTGCCGATACTTTGGCTACCAGCTATGCCCTTGCCACAGCTATTCGCCATATCGGATTGCCTGATCTGATCATCTCCGGTCGTCAGGCTATCGATGGCGATACGGCACAAGTAGGCCCACAGGTGGCAGAGAAACTCGGACTTCCGCAAGTGACCTATGCTGAAGATATTCTGAAAATAGATGCCAAAAGTATCGAGATCAAGCGTCGTCTTGAGCGAGGTGTAGAGACCGTTGTCGCTTCAATGCCTTTAGTTGTAACGGTAAACGGCTCCTCAGCTCCGTGTCGTCCACGCAATGCCAAGTTGCTCCAGCGATATAAATATGCTCGTACAGCTTCCGAAACCAAAGACACGACAGAGGAGATCAAAGCACTCCTTGGCCAACGTCCGGGCTTGCATATTGTGGAATTGGGTGCCGCAGAAGTAGGGGCAGACCTCGCTCAGTGCGGTCTGTCCGGTTCACCTACAAAGGTGAAACATATAGAGAGTGTTGTGTTCCAGGCCAAAGAAGCAAAACGAATGCTCCCCGAAGATGGAGAGATTGAAGCTTTGATGCAGGAACTTATTGCTAATCATACAATCGGA","6.70","-0.87","30953","MKIIVLAKQVPDTRNVGKDAMKADGTVNRSVLPAIFNPEDLNALEQALRVKETMPDTTVHILTMGPPRAADIIREAMYRGADGGYLLTDKAFAGADTLATSYALATAIRHIGLPDLIISGRQAIDGDTAQVGPQVAEKLGLPQVTYAEDILKIDAKSIEIKRRLERGVETVVASMPLVVTVNGSSAPCRPRNAKLLQRYKYARTASETKDTTEEIKALLGQRPGLHIVELGAAEVGADLAQCGLSGSPTKVKHIESVVFQAKEAKRMLPEDGEIEALMQELIANHTIG","831150 830287","Forms a hetrodimer with PG0697, electron transfer flavoprotein alpha subunit.TIGR ID: PG0777","electron transfer flavoprotein beta subunit","Cytoplasm","Gapped BLAST shows numerous hits to electron transfer flavoprotein/nitrogen fixation proteins including 39% similarity to an electron transfer flavoprotein beta subunit in Megasphaera elsdenii (gb|AAC31169), 38% similarity to a fixA protein in Azorhizobium caulinodans (P26482) and 41% similarity to a electron transfer flavoprotein beta chain in Clostridium acetobutylicum (gb|AAA95969).This sequence is similar to BT1804. ","
InterPro
IPR000049
Domain
Electron transfer flavoprotein, beta-subunit, core
PD003528\"[139-182]TETF_beta
InterPro
IPR012255
Family
Electron transfer flavoprotein, beta subunit
PIRSF000090\"[1-288]TBeta-ETF
PTHR21294\"[1-200]TBeta-ETF
InterPro
IPR014729
Domain
Rossmann-like alpha/beta/alpha sandwich fold
G3DSA:3.40.50.620\"[1-288]TRossmann-like_a/b/a_fold
InterPro
IPR014730
Domain
Electron transfer flavoprotein, alpha/beta-subunit, N-terminal
PF01012\"[24-215]TETF
noIPR
unintegrated
unintegrated
SSF52402\"[1-285]TSSF52402


","BeTs to 6 clades of COG2086COG name: Electron transfer flavoprotein beta-subunitFunctional Class: CThe phylogenetic pattern of COG2086 is a---y-v-Ebr----------Number of proteins in this genome belonging to this COG is 2","***** IPB000049 (Electron transfer flavoprotein beta-subunit) with a combined E-value of 2.8e-48. IPB000049A 1-12 IPB000049B 36-52 IPB000049C 59-84 IPB000049D 115-149 IPB000049E 161-211","Residues 1-287 are 39% similar to a (ELECTRON TRANSPORT FLAVOPROTEIN TRANSFER) protein domain (PD003528) which is seen in O85691_MEGEL.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Mon Dec 8 16:13:21 2003","Wed Jan 3 14:56:11 2001","Mon Dec 8 16:13:21 2003","Wed Jan 3 14:53:09 2001","Tue Apr 3 14:46:34 MDT 2001","Tue Apr 3 14:46:34 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1-252 share 44% identity with PG0959, electron transfer flavoprotein beta-subunit.","Tue Apr 3 14:46:34 MDT 2001","Tue Apr 3 14:46:34 MDT 2001","-56% similar to PDB:1EFP ELECTRON TRANSFER FLAVOPROTEIN (ETF) FROM PARACOCCUS DENITRIFICANS (E_value = 3.4E_17);-47% similar to PDB:1O94 TERNARY COMPLEX BETWEEN TRIMETHYLAMINE DEHYDROGENASE AND ELECTRON TRANSFERRING FLAVOPROTEIN (E_value = 7.4E_12);-47% similar to PDB:1O95 TERNARY COMPLEX BETWEEN TRIMETHYLAMINE DEHYDROGENASE AND ELECTRON TRANSFERRING FLAVOPROTEIN (E_value = 7.4E_12);-47% similar to PDB:1O96 STRUCTURE OF ELECTRON TRANSFERRING FLAVOPROTEIN FOR METHYLOPHILUS METHYLOTROPHUS. (E_value = 7.4E_12);-47% similar to PDB:1O97 STRUCTURE OF ELECTRON TRANSFERRING FLAVOPROTEIN FROM METHYLOPHILUS METHYLOTROPHUS, RECOGNITION LOOP REMOVED BY LIMITED PROTEOLYSIS (E_value = 7.4E_12);","","","Residues 1 to 277 (E-value = 2.1e-58) place PG0698 in the ETF_beta family which is described as Electron transfer flavoprotein beta subunit (PF01012)","Tue Apr 3 14:46:34 MDT 2001","34540560","","","","","","1","","","PG0777" "PG0699","831960","831244","717","ATGACAGATATCCATCCGCCCCTCCTTCTCATAGATACCTCTACTCGCGTTTGCTCAGTGGCGGTTGCTGCTGCAGGTACTATTATCTCACAACGGGTTAGCCATGTGGGCAATTCGCATGCTGCTAACATCGGCGTATTCGTACAAGAGGTCTTGACAGAGGCAATAGGCTTAGGAGTGAAGCCTTCCATAGTAGCTCTAAGTTCCGGTCCCGGATCATATACCGGACTACGCATCGGATCGTCCATTGCCAAAGGGATATGCTTTGGACTCGGAATACCGCTTGTGTCTGTCCCTACTTTGGAGTTGATTGCTGAGGCTGCACGACCACTGTCTCAACCTGATTGGTTGATTTGCCCTATGATCGACGCCAGACGTATGGAAGTTTATACAGCACTTTTCGATTCCAAAGGTAAAGCCCTTACTGATACACTGCCTTTGGTGATAGACAATGATTCTTTTTCCGAAGAACTCAAAAAGCGCAATATCTTATTCGTTGGTGATGGTGCTGAAAAGTGTCGCCCCTTTCTTTCGCATCCCAATGCTCATTTTTCAAAGAATGTCATCTATCCTCTTGCTTTGTATATGCTTCATCCTGCGTTATCGCGTATCGAGACTTCATCTTACGAGGATGTTGCCTATTGGGAGCCATTCTACCTGAAAGAATTTGTAGCTACCGTAGCCAAAAACAAAGTAATTCCACGTACACAAACGACA","7.10","0.25","25866","MTDIHPPLLLIDTSTRVCSVAVAAAGTIISQRVSHVGNSHAANIGVFVQEVLTEAIGLGVKPSIVALSSGPGSYTGLRIGSSIAKGICFGLGIPLVSVPTLELIAEAARPLSQPDWLICPMIDARRMEVYTALFDSKGKALTDTLPLVIDNDSFSEELKKRNILFVGDGAEKCRPFLSHPNAHFSKNVIYPLALYMLHPALSRIETSSYEDVAYWEPFYLKEFVATVAKNKVIPRTQTT","831960 831244","TIGR ID: PG0778","possible glycoprotein endopeptidase","Cytoplasm","Gapped BLAST shows numerous hits including 32% similarity to a glycoprotein endopeptidase in B.subtilis (CAB12411), 36% similarity to a putative endopeptidase in Sinorhizobium meliloti (gb|AAF76862) and 29% similarity to a hypothetical protien in Vibrio cholerae (gb|AAF95137), also 30% similarity to HI0388 in H.influenzae.","
InterPro
IPR000905
Domain
Peptidase M22, glycoprotease
PF00814\"[27-229]TPeptidase_M22
noIPR
unintegrated
unintegrated
SSF53067\"[8-113]T\"[115-219]TSSF53067


","BeTs to 10 clades of COG1214COG name: Inactive homologs of metal-dependent proteases, putative molecular chaperonesFunctional Class: OThe phylogenetic pattern of COG1214 is ------vcebrh--gpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB000905 (Glycoprotease, (M22) metallo-protease family) with a combined E-value of 1.8e-06. IPB000905A 8-22 IPB000905C 61-105","Residues 8-102 are 31% similar to a (ENDOPEPTIDASE O-SIALOGLYCOPROTEIN HYDROLASE) protein domain (PD002367) which is seen in O05516_BACSU.Residues 8-161 are 29% similar to a (CONSERVED HYPOTHETICAL PROTEIN) protein domain (PD179970) which is seen in O83846_TREPA.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Jan 3 16:02:53 2001","Wed Jan 3 16:02:53 2001","Wed Jan 3 16:02:53 2001","Thu May 3 18:14:27 MDT 2001","Thu May 3 18:14:27 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu May 3 18:14:27 MDT 2001","-46% similar to PDB:2GEL 2.05A crystal structure of Salmonella typhimurium YeaZ, form B (E_value = 1.6E_14);-46% similar to PDB:2GEM 2.1A crystal structure of Salmonella tyhpimurium YeaZ, a putative Gram-negative RPF, form-A (E_value = 1.6E_14);-47% similar to PDB:1OKJ CRYSTAL STRUCTURE OF THE ESSENTIAL E. COLI YEAZ PROTEIN BY MAD METHOD USING THE GADOLINIUM COMPLEX \"DOTMA\" (E_value = 3.9E_13);","","","Residues 7 to 223 (E-value = 9.4e-10) place PG0699 in the Peptidase_M22 family which is described as Glycoprotease family (PF00814)","Thu May 3 18:14:27 MDT 2001","34540561","","","","","","1","","","PG0778" "PG0700","832664","832194","471","ATGGGAAAGTTTAATAAATCCGGCGGGCGTGAAATGCCCGAACTCAATACCTCGTCTTTGCCTGACTTGGTTTTTGCGTTCCTCTTCTTTATCATGATGGTAACGACAATTCGTGAGGTGACGCCCAAGGTGTCGTATAATAACCTCCCTAAAGCGACTGAATTGACCAAGCTCGAAGAAAAGTCTTTGGTTACATTCGTATATATCGGCAAGCCCAATGAGGCTTATCAGACTATGTACGGGACCAAGCCTTGTATTCAGCTGAATGATCAGATTACGCAAGATCCGGGTGCTGTATATACGTACGTTAAACAAGAGGAAAGCAAGGTTAAAGATGAGCGCAAAAAGCTTATGACAATATCCATCAAAGGTGACAAAGATACCAAGATGCATATCTTCGAACAGGTAAAATATGAGCTTCGTCGTGCTGATGCTTTGAATATCAACTATTCGGCTCGTAAGGACACCAAA","9.90","5.19","18077","MGKFNKSGGREMPELNTSSLPDLVFAFLFFIMMVTTIREVTPKVSYNNLPKATELTKLEEKSLVTFVYIGKPNEAYQTMYGTKPCIQLNDQITQDPGAVYTYVKQEESKVKDERKKLMTISIKGDKDTKMHIFEQVKYELRRADALNINYSARKDTK","832664 832194","TIGR ID: PG0779","conserved hypothetical protein","Periplasm, Cytoplasm","This sequence corresponds to gi:34396875 in Genbank.Its nearest neighbor in the NR database is gi:53715023 from Bacteroides fragilis YCH46.","
noIPR
unintegrated
unintegrated
signalp\"[1-36]?signal-peptide
tmhmm\"[19-37]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Mar 3 14:11:35 2005","Thu Mar 3 14:11:35 2005","Wed Jan 3 16:09:22 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 3 14:11:35 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540562","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Thu Mar 3 14:11:35 2005","","1","","","PG0779" "PG0701","833294","832683","612","ATGGCAAGAAAGAAAAGAAAAACGCCCGGCATCAACGGATCATCATCAGCCGATATCGCTTTTATGTTGCTTATCTTCTTTTTGATTACTACATCAATGGATACGGATATGGGGCTTACTCGTCGTTTGCCACCGCTCTCTCCTAACAAGGAAAAACAACCCGACGTCGAGATCAATGACCGCAACATCATGCGTATATTGGTCAATAAGAATGACGAGATTATCTTGTTGAAAAAGGGAGCTACAGGATCGCAGGATCAGATTATCCCCGTGAAGTTGAGTGATTTAAGACGGATTACAAAAGAGTTTATCGCCAACCCCACGAATCGTGCCGATCTTCCCGAGAAGGAAAAGCGCGAGGTAGTAGGGCTTGGTACCATGGAACTGGTTACTTCTTCTTATGCTATTTCGATCAAAAATCAGATCGAGACCAGCTATCAGATGTATATCAGTGTACAAAATGAACTCATTGCTGCATATAACGAAGTTTGGGACGAATTTGCTCAAAAGTATTTCCACAAACCATACAAGGAGCTTACTCCTTCCAAGCAGAAGGCTGTTTTAGAAGCATATCCGTTGCACATTTCAGAAATGCCGTTGTCTAATCTCAAG","9.90","4.48","23260","MARKKRKTPGINGSSSADIAFMLLIFFLITTSMDTDMGLTRRLPPLSPNKEKQPDVEINDRNIMRILVNKNDEIILLKKGATGSQDQIIPVKLSDLRRITKEFIANPTNRADLPEKEKREVVGLGTMELVTSSYAISIKNQIETSYQMYISVQNELIAAYNEVWDEFAQKYFHKPYKELTPSKQKAVLEAYPLHISEMPLSNLK","833294 832683","TIGR ID: PG0780","hypothetical protein","Cytoplasm, Periplasm","No significant hits found.","
noIPR
unintegrated
unintegrated
SSF48371\"[58-127]TSSF48371


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Jan 3 16:13:01 2001","Wed Jan 3 16:13:01 2001","Wed Jan 3 16:11:20 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540563","","","","","","1","","","PG0780" "PG0702","833800","833333","468","ATGGCTGTTACTAAAATAAGAAAAGTATCCAGCTGGACTCTCATTTCTATTGTGACCATCAGCGTTATCGTTGTATTGGCATTCTTCTTTGGAGGAAATCACGTGGAAGGAGAGAGGACGATCTATCATCAGACCGGCCTGCTGCTTACTTGGTCATATATTTTATTCGGAGCTGCCGTGCTGGCGACTTTGTTCTTTTCCTTAGGCTCTTTTGCCAAGGGTTTCAAGAACAATCCCAGGAGAGCCATGATGTCGCTTGCGTCTTTCATCCTCTTGGTTGTCGTGTTGCTCATTGGCTATGCAGCGGGTAGTACTGAGGCGATGATCAGTCTCAACGCAGATTCTGCCCAATACAACACACCGGGTTGGTTGAAAGTTACGGATATGTGGCTTTACACCATCTACACCTTAGGTATCCTTGTAATTTTGGCAACAATTTGGGGTGCAGCCCGCAAGTCACTGAAGCGT","10.90","8.46","17158","MAVTKIRKVSSWTLISIVTISVIVVLAFFFGGNHVEGERTIYHQTGLLLTWSYILFGAAVLATLFFSLGSFAKGFKNNPRRAMMSLASFILLVVVLLIGYAAGSTEAMISLNADSAQYNTPGWLKVTDMWLYTIYTLGILVILATIWGAARKSLKR","833800 833333","TIGR ID: PG0781","conserved hypothetical protein","Inner membrane, Cytoplasm","This sequence corresponds to gi:34396877 in Genbank.Its nearest neighbor in the NR database is gi:53715025 from Bacteroides fragilis YCH46.","
noIPR
unintegrated
unintegrated
signalp\"[1-27]?signal-peptide
tmhmm\"[10-30]?\"[49-69]?\"[84-104]?\"[130-150]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Mar 3 15:44:03 2005","Thu Mar 3 15:44:03 2005","Wed Jan 3 16:15:21 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 3 15:44:03 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540564","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Thu Mar 3 15:44:03 2005","","1","","","PG0781" "PG0703","834621","833812","810","ATGAAAAAGTTATTTGCAACAATTGCATGTGTGGCCTTTATGTCAGTAGGCTTCATGACTCAGGCTTTCGCTCAAGATGCAGCGGCTGATTCGGCCACTTCGGTAGCTATGGAGACTGCTGCAGTAGAAGAGGAAGCTCCTGCGGTTGAAACAATCCCCGCGGCTGAAGAAGCTTCTTTCCACCAGGCATTGAAGAAGAAGTTTATCGAAGGTGGCCCCGAGTTTATGTCCACTGTAGCTATTGCCCTTATTTTAGGTTTGGCTATCTGCCTGGAGCGTATCATCTATCTGAACTTGGCTGACACGAACAACGAAAAATTGCTTGCTGATATTGATCAAGCTCTTGAGCGTGGCGATGTAGAAGGTGCTAAGACCATTGCTCGCGACACTCGTGGTCCTGTAGCATCAATCGCTTATCAGGGCCTGATGCGTATTGATCAGGGAGTAGATATTGTAGAACGCTCTATCGTTTCATACGGGGGTGTTCAGAGCGGTTTGCTCGAAAAGAATCTTTCATGGATTACCCTCTTTATTGCCATGGCTCCTTCTCTTGGATTCTTGGGTACAGTAGTAGGTATGGTGATGGCATTCGACAAGATTGAGCGCGTAGGTGATATCAGCCCGACGGTTGTTGCCGGCGGTATGAAGGTGGCTTTGATCACTACCATCGGTGGTCTTATCGTAGCCTTGATCCTTCAGGTATTCTATAACTACATCCTTTCTAAGGTAGAGGGTATCCTCAACAAGATGGAAGACGCATCTATCACACTGCTCGATTCCATTATCAAGTACAACGTGAAATTCAAAAAA","4.70","-7.84","28879","MKKLFATIACVAFMSVGFMTQAFAQDAAADSATSVAMETAAVEEEAPAVETIPAAEEASFHQALKKKFIEGGPEFMSTVAIALILGLAICLERIIYLNLADTNNEKLLADIDQALERGDVEGAKTIARDTRGPVASIAYQGLMRIDQGVDIVERSIVSYGGVQSGLLEKNLSWITLFIAMAPSLGFLGTVVGMVMAFDKIERVGDISPTVVAGGMKVALITTIGGLIVALILQVFYNYILSKVEGILNKMEDASITLLDSIIKYNVKFKK","probable biopolymer transport (tolQ) protein","This family groups together integral membrane proteins that appearto be involved with translocation of proteins across a membrane. These proteins are probably proton channels. TIGR ID: PG0782","probable biopolymer transport (tolQ) protein","Inner membrane, Cytoplasm","Gapped BLAST shows numerous weak hits with the carboxyl terminal residues of PG0703 including residues 167-258 show 43% similarity to residues 345-436 of two biopolymer transport protein in Vibrio cholerae (gb|AAF94701, gb|AAC69453, residues 67-261 are 26% similar to residues 3-197 of a tolQ-type transport protein in Pseudomonas aeruginosa (gb|AAG0637). PG0703 also shows a weak similarity to CT596 in Chlamydia trachomatis and HI0253 in Haemophilus influenzae.","
InterPro
IPR002898
Family
MotA/TolQ/ExbB proton channel
PF01618\"[117-255]TMotA_ExbB


","BeTs to 7 clades of COG0811COG name: Biopolymer transport proteinsFunctional Class: NThe phylogenetic pattern of COG0811 is --t--Q-CE--HUJ----inxNumber of proteins in this genome belonging to this COG is 2","***** BP03317 (TRANSPORT PROTEIN TRANSMEMBRA) with a combined E-value of 9.2e-16. BP03317A 75-93 BP03317B 174-197 BP03317C 211-237","Residues 167-248 are 45% similar to a (PROTEIN TRANSPORT BIOPOLYMER TRANSMEMBRANE INNER) protein domain (PD003317) which is seen in Q9ZHW1_VIBCH.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","Wed Mar 22 16:17:41 MST 2000","Wed Jan 3 16:34:34 2001","Wed Mar 22 16:17:41 MST 2000","Wed Jan 3 16:36:54 2001","Wed Jan 3 16:34:34 2001","Tue Apr 3 14:57:45 MDT 2001","Tue Apr 3 14:57:45 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 35-259 are 26% similar to PG0570, a conserved hypothetical protein (probable biopolymer transport).","Tue Apr 3 15:01:53 MDT 2001","Tue Apr 3 14:57:45 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 117 to 255 (E-value = 5.7e-14) place PG0703 in the MotA_ExbB family which is described as MotA/TolQ/ExbB proton channel family (PF01618)","Tue Apr 3 14:57:45 MDT 2001","34540565","","","","","","1","","","PG0782" "PG0704","835796","834972","825","TTGCCTCTTATTCGCTCTTGCCTAATGATACTCATCGATACCCATACGCATGTTTATGAACCCCAGTTCGACGATGATGTCGAGCAAGTAATTCTTGCTGCTCAAGAAGCCGGTCTCATTCATCTCGTCATGCCGAATATCGATGTGGAAAGTATCGCGCGTATGCAGGGAGTCCTCTCTCGACACCCGGGCTATGTGTCCGAGGCTATGGGCCTGCATCCAACATCAGTGCGAGATGATTTTCGGGAACAACTCACTTTTATTCGCCACGAACTGGATACCCGTTCGTTCGTAGCTATAGGAGAAATCGGTATCGATTTGTATTGGGATAAGACATTCGAAGCAGAACAAGTCGAAGCCTTTCTTACTCAAATAGAATGGAGTATGGCTTACGACTTGCCGATTATTATACATTCTCGCGAGGCATGGGATGTGGTATTTGCGTGTCTGAACAGGTTCCCATCCGATAAAATCCGAGGTGTTTTTCATAGTTTTTCGGGCGATGAGACCGATCTTCGACGAGCTTTGTCATATCCTCATTTCTATATAGGTATCAATGGAACTGTAACATTCAAGAAAAACACGCTCCCGGCCTTATTGCCTCTGATACCTCTTGATCGGCTCCTGCTCGAAACGGATTCGCCATACTTGGCACCCATCCCGAAAAGAGGCCGCCGCAATGAACCTGCTTATCTGGTGCATACAGCTACTTTTATTGCACACATCCTTGGACTGGATCCGGATATTTTGGCTGAAAAAACGGCCCGAAATGCATGCCGTTTTTTCGGTTTTCAGTTTCAAGAGGGAAAAATTATTCGTCCGATT","5.60","-8.48","31401","LPLIRSCLMILIDTHTHVYEPQFDDDVEQVILAAQEAGLIHLVMPNIDVESIARMQGVLSRHPGYVSEAMGLHPTSVRDDFREQLTFIRHELDTRSFVAIGEIGIDLYWDKTFEAEQVEAFLTQIEWSMAYDLPIIIHSREAWDVVFACLNRFPSDKIRGVFHSFSGDETDLRRALSYPHFYIGINGTVTFKKNTLPALLPLIPLDRLLLETDSPYLAPIPKRGRRNEPAYLVHTATFIAHILGLDPDILAEKTARNACRFFGFQFQEGKIIRPI","","TIGR ID: PG0783","conserved hypothetical protein (possible PHP hydrolase)","Cytoplasm","Gapped BLAST shows strong hits to many conserved hypothetical proteins including 39% similarity to gb|AAF93281 in Vibrio cholerae, 33% similarity to putative deoxyribonuclease yabD in B.subtilis (sp|P37545|YABD_BACSU) and 34% similarity to gb|AAD07053 in Helicobacter pylori. This sequence is also similar to CT594 of Chlamydia trachomatis and HI0454 of Haemophilus influenzae.","
InterPro
IPR001130
Family
TatD-related deoxyribonuclease
PTHR10060\"[33-270]TTATD DNASE-RELATED
PF01026\"[9-263]TTatD_DNase
TIGR00010\"[11-264]TTIGR00010: hydrolase, TatD family
PS01090\"[134-144]TTATD_2
PS01091\"[199-215]TTATD_3
InterPro
IPR012278
Family
Mg-dependent DNase, TatD
PIRSF005902\"[11-266]TMg-dependent DNase, TatD type
noIPR
unintegrated
unintegrated
G3DSA:3.20.20.140\"[11-262]Tno description


","BeTs to 16 clades of COG0084COG name: Predicted hydrolases of PHP superfamilyFunctional Class: RThe phylogenetic pattern of COG0084 is -mtkYqvcEbrHujgpoLinxNumber of proteins in this genome belonging to this COG is 2","***** IPB001130 (Uncharacterized protein family UPF0006) with a combined E-value of 1.6e-33. IPB001130A 11-19 IPB001130B 69-74 IPB001130C 97-108 IPB001130D 117-140 IPB001130E 203-225","Residues 65-262 are 34% similar to a (PROTEIN CONSERVED INTERGENIC REGION) protein domain (PD002155) which is seen in YABD_BACSU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","Wed Jan 3 16:53:00 2001","","Wed Jan 3 16:53:00 2001","Wed Jan 3 16:50:34 2001","Wed Jan 3 16:50:34 2001","Tue Apr 3 15:04:28 MDT 2001","Tue Apr 3 15:04:28 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 69-176 show 29% similarity to residues 56-161 of PG0183, another conserved hypothetical protein.","Tue Apr 3 15:04:28 MDT 2001","Tue Apr 3 15:04:28 MDT 2001","-51% similar to PDB:2GZX Crystal Structure of the TatD deoxyribonuclease MW0446 from Staphylococcus aureus. Northeast Structural Genomics Consortium Target ZR237. (E_value = 1.2E_35);-50% similar to PDB:1J6O Crystal structure of TatD-related deoxyribonuclease (TM0667) from Thermotoga maritima at 1.8 A resolution (E_value = 5.3E_28);-45% similar to PDB:1YIX Crystal structure of YCFH, TATD homolog from Escherichia coli K12, at 1.9 A resolution (E_value = 1.2E_22);-44% similar to PDB:1ZZM Crystal structure of YJJV, TATD Homolog from Escherichia coli k12, at 1.8 A resolution (E_value = 3.5E_19);-44% similar to PDB:1XWY Crystal structure of tatD deoxyribonuclease from Escherichia coli K12 at 2.0 A resolution (E_value = 5.5E_17);","","","Residues 9 to 264 (E-value = 4.1e-85) place PG0704 in the TatD_DNase family which is described as TatD related DNase (PF01026)","Tue Apr 3 15:04:28 MDT 2001","34540566","","","","","","1","","","PG0783" "PG0705","836820","835846","975","ATGCATACTTTCGAAGACCTGAGAGAAATAATCGAACAGGAGATAGCATCACAACCCTATGATCAGAGAAAACCCGACGGCCTCTTCCAACCTATATCCTATATTTTGAGGCTCGGAGGCAAGCGTGTCCGCCCTACCCTCGCATGTATAGCCTGCGAGATGTTCGGTGGTGATTATAAGCCGGCCCTCGAAGTGGCTATGGCTATTGAAACTTACCATAACTTCACCTTGCTGCATGACGATCTCATGGACAAATCTTCCATGAGAAGAGGTAAAGAAACCGTTCATCATCGGTGGGGGGATAATACAGCCATTCTCTCCGGCGATGCCATGACAGTTGCCGCCTACGAGCATCTGGCCAAAGTGGATAGTCGGCTACTGCCTGTCCTTTTGCCCTTGTTCAATCGTATGGCTATGGAGATTTGCCAAGGACAACAGTACGACATGGACTTCGAACGGCGGGACTTTGTTGCCGAGGACGAGTACCTGGAGATGATTCGTTTGAAGACAGCAGTTCTCTTGGCTACAGCCCTTAAGATGGGGGCTATAGCCGGAGGAGCGGATATTGAGAAAGCAGATATTCTCTATCGCTACGGCATACATATCGGCTTGTCTTTCCAATTGGAGGACGACCTCCTCGATGTATATGGCGATCCCATTATCCTCGGCAAGAAAATCGGCGATGATATAGCTTGTAATAAAAAGACGATGCTTCTGATCAAAGCCCTTGAGATGGCTCAGGGAGAGGAATTGAATCTCCTCAGAGAATCCCTTTTGATGCCGGATGTGCAGTGTGAAGAAAAGATCCGAGCTGTGACAGGTATTTATAATCGTCTGGGGATTCGTCCGATCGTGGAAGATCTGATCGATTATCACAACGGTTTGGCCGAAAAGGCTCTTGACGAATTGGGTCTTGATGAGATCACAACCAAGCCTTTGAGAGAACTGATCGGTACTCTCCGTAACAGAAAATCA","4.90","-13.28","36803","MHTFEDLREIIEQEIASQPYDQRKPDGLFQPISYILRLGGKRVRPTLACIACEMFGGDYKPALEVAMAIETYHNFTLLHDDLMDKSSMRRGKETVHHRWGDNTAILSGDAMTVAAYEHLAKVDSRLLPVLLPLFNRMAMEICQGQQYDMDFERRDFVAEDEYLEMIRLKTAVLLATALKMGAIAGGADIEKADILYRYGIHIGLSFQLEDDLLDVYGDPIILGKKIGDDIACNKKTMLLIKALEMAQGEELNLLRESLLMPDVQCEEKIRAVTGIYNRLGIRPIVEDLIDYHNGLAEKALDELGLDEITTKPLRELIGTLRNRKS","836820 835846","TIGR ID: PG0784","bifunctional short isoprenyl diphosphate synthase","Cytoplasm","Numerous hits in gapped BLAST to bifunctional short chain isoprenyl diphosphate synthase sequences and geranylgeranyl diphosphate synthase sequences, e.g., residues 25-291 are 39% similar to IDSA_METTM. Residues 9-244 are 38% similar to AF120272,a geranylgeranyl diphosphate synthase.","
InterPro
IPR000092
Family
Polyprenyl synthetase
PTHR12001\"[1-325]TPolyprenyl_synt
PF00348\"[28-277]Tpolyprenyl_synt
PS00444\"[202-214]TPOLYPRENYL_SYNTHET_2
PS00723\"[77-91]TPOLYPRENYL_SYNTHET_1
InterPro
IPR008949
Domain
Terpenoid synthase
SSF48576\"[1-325]TTerpenoid_synth
noIPR
unintegrated
unintegrated
G3DSA:1.10.600.10\"[28-325]TG3DSA:1.10.600.10
PTHR12001:SF8\"[1-325]TPTHR12001:SF8


","BeTs to 16 clades of COG0142COG name: Geranylgeranyl pyrophosphate synthaseFunctional Class: HThe phylogenetic pattern of COG0142 is AmtkYQVCEBRHUJ--olinxNumber of proteins in this genome belonging to this COG is 2","***** IPB000092 (Polyprenyl synthetase) with a combined E-value of 7.8e-35. IPB000092A 39-49 IPB000092B 66-112 IPB000092C 144-149 IPB000092D 202-224","Residues 66-208 are 39% similar to a (SYNTHASE PYROPHOSPHATE TRANSFERASE SYNTHETASE) protein domain (PD000572) which is seen in O27998_ARCFU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Dec 8 10:16:52 MST 2000","Fri Dec 8 10:29:58 MST 2000","Fri Dec 8 10:16:52 MST 2000","Tue Apr 3 15:07:21 MDT 2001","Tue Apr 3 15:07:21 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 40-247 share 32% identity with PG1744, a predicted ctaprenyl-diphosphate synthase.","Tue Apr 3 15:07:21 MDT 2001","Tue Apr 3 15:07:21 MDT 2001","-57% similar to PDB:1WY0 Crystal structure of geranylgeranyl pyrophosphate synthetase from Pyrococcus horikoshii Ot3 (E_value = 7.1E_38);-53% similar to PDB:1RTR Crystal Structure of S. Aureus Farnesyl Pyrophosphate Synthase (E_value = 2.7E_29);-52% similar to PDB:2H8O The 1.6A crystal structure of the geranyltransferase from Agrobacterium tumefaciens (E_value = 2.4E_25);-52% similar to PDB:2J1P GERANYLGERANYL DIPHOSPHATE SYNTHASE FROM SINAPIS ALBA IN COMPLEX WITH GGPP (E_value = 4.1E_25);-50% similar to PDB:1RQI Active Conformation of Farnesyl Pyrophosphate Synthase Bound to Isopentyl Pyrophosphate and Dimethylallyl S-Thiolodiphosphate (E_value = 1.2E_24);","","","Residues 28 to 277 (E-value = 8.2e-59) place PG0705 in the polyprenyl_synt family which is described as Polyprenyl synthetase (PF00348)","Tue Apr 3 15:07:21 MDT 2001","34540567","","","Chen,A. and Poulter,C.D.Isolation and characterization of idsA: the gene for the shortchain isoprenyl diphosphate synthase from Methanobacteriumthermoautotrophicum.Arch. Biochem. Biophys. 314 (2), 399-404 (1994)","","Fri Dec 8 10:29:58 MST 2000","1","","","PG0784" "PG0707","837683","836994","690","ATGGAAATCAAGAAATCGCCTAAGGCCGACTTGGAGAAGGGAAAAGGTTTGAACTTCCTTTTGGGGCTTGTCGTAGCTCTCGCGATCGTGTATGTAGCTTTGGAATATCGTACTTACGATAAGATAGAGGCCTATACACGCGATAAAGTGGATATTGCCGACATGGAGGAAACTGTCCTGCTCGAAGAAAACGAGCCGGAGCCGGAGCAGCCCGAGCCGGAGCAACCCCAGCAACAGGAGGTACAGCTGCCGGAAGAATTTAAGGTGGTAGATAACACCCAGAAAGTGGAGAAAATCGCTTTGGTCTCTGTCGATGAGAGCAAACCGTTGCCCCCGCCTGCGCCCGTTGCCCCCGTTAAAGTTGAGGAAGAAGAGGACAAAATCCACGAAGTGGTAGAAAGTCCGGCAGAGTTCCCGGGTGGTTATACTGCTCTCTCTAAATGGCTTAGTAAAAATTTGGTCTATCCCGAGCAGGCTGCCGAAATGGGCATCCAAGGTAAGGTAATCGTTCGTTTCGTGGTCGAAAAAGATGGTTCTGTGACACAAGCAACTGTTGTTAAGGGTATTGACCCTGCACTTGACAAGGAAGCCCTCCGCGTGATACAGACTATGCCCAAATGGAAGCCCGGTATGCAGCAGGGAAGAGCTGTGCGTGTACGCTGTACCCAGCCCGTCCAGTTCAAGCTGCAA","4.70","-10.78","25758","MEIKKSPKADLEKGKGLNFLLGLVVALAIVYVALEYRTYDKIEAYTRDKVDIADMEETVLLEENEPEPEQPEPEQPQQQEVQLPEEFKVVDNTQKVEKIALVSVDESKPLPPPAPVAPVKVEEEEDKIHEVVESPAEFPGGYTALSKWLSKNLVYPEQAAEMGIQGKVIVRFVVEKDGSVTQATVVKGIDPALDKEALRVIQTMPKWKPGMQQGRAVRVRCTQPVQFKLQ","837722 836994 [Shorter 923 693 99]","TIGR ID: PG0785","hypothetical protein (possible tonB domain)","Inner membrane, Cytoplasm, Extracellular","No strong hits. ","
InterPro
IPR003538
Family
Gram-negative bacterial tonB protein
PF03544\"[152-186]TTonB
InterPro
IPR006260
Domain
TonB, C-terminal
TIGR01352\"[153-230]TtonB_Cterm
noIPR
unintegrated
unintegrated
SSF74653\"[66-230]TSSF74653


","BeTs to 3 clades of COG0810COG name: Periplasmic protein TonB, links inner and outer membranesFunctional Class: MThe phylogenetic pattern of COG0810 is -----q--e--hUJ-------Number of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 13:34:24 MDT 2001","","Thu Jun 14 13:34:24 MDT 2001","Thu Jun 14 13:34:24 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:34:24 MDT 2001","Thu Jun 14 13:34:24 MDT 2001","","","Wed Jan 3 17:18:46 2001","Fri Jun 15 10:59:37 MDT 2001","Wed Jan 3 17:18:46 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 97-230 share 46% identity with PG1912, a conserved hypothetical protein with a possible tonB domain.","Fri Jun 15 10:59:37 MDT 2001","Tue Apr 3 15:09:58 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 152 to 186 (E-value = 2.9e-09) place PG0707 in the TonB family which is described as Gram-negative bacterial tonB protein (PF03544)","Tue Apr 3 15:09:58 MDT 2001","34540568","","","","","","1","","","PG0785" "PG0708","837816","838055","240","ATGAGTCAAATTGCAGGCTATTTTTCTTCTGATTCCGGGGTTTACCCCAATCCGGTGAAGGATGTACTGAATATTAAGCATGAAGGTGACTTCGGTGTCCGGATATTTGATTTTTCAGGTCGTTTGGTGCTCTCTATGGAGAATACTCGCATGATCGGCGTGAAGGTTTTGACCGCCGGGGCCTATGTGATCAAACTCATGACTCAAGGCAGCACACCGGCCGAACGCTTCATCAAGCTC","10.00","2.22","8797","MSQIAGYFSSDSGVYPNPVKDVLNIKHEGDFGVRIFDFSGRLVLSMENTRMIGVKVLTAGAYVIKLMTQGSTPAERFIKL","837714 838055","Orf predicted by Glimmer with TTG lysine start. Likely not a gene.TIGR ID: PG0787","hypothetical protein","Cytoplasm","This sequence corresponds to gi:34396883 in Genbank.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 13:35:09 MDT 2001","","Thu Jun 14 13:35:09 MDT 2001","Thu Jun 14 13:35:09 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:35:09 MDT 2001","Thu Jun 14 13:35:09 MDT 2001","","Fri Jun 15 11:03:29 MDT 2001","Wed Jan 3 17:21:08 2001","Thu Mar 3 15:46:41 2005","Wed Jan 3 17:21:08 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Jun 14 13:35:09 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Jun 14 13:35:09 MDT 2001","34540570","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Thu Mar 3 15:46:41 2005","","1","","","PG0787" "PG0709","840767","838137","2631","ATGCAAACCCCAGCAATGTCAGCTATAAGCAAAAAGTCGGCTCTCTCTCTCTTCTTCCTCTCTCTTTTCTTATTGGGGATGCTACCGCTCGCAGGGCAAACTCGCTTCGCCGGAGTGGTATTGGATTCGGCTACATTGGAGCCGATCCCCTATGCTTCGGTCTTCTGTGCCGACAATAAAGGAGTGGGCACGGTAACCTCTGCCGCCGGTATGTTCGACCTGACTTCTCCCCATAACGATCGGACTATCATCATATCATCGACCGGATACAGGAAGCAAACTTTTTCATTGCGTTCGAGCGAAAAGCGCAATATGCACTGCCGTATCCTTTTGGCTTCGGAGGAGTTGCAACTGAGCAGCGTAGTGGTCAAAGCCAAGAGACGGAAATACTCCAAGAAAAACAACCCCGCTGTGGATCTGATCCGCAAAGCCATAGCGGCCAAGGACAGCAACCGGATAGAATCGGCACCGGCGTACAGCTACCGTACATACGAAAGAATACTTGTCTCGGACGATGATTTCCGATCGGACGAAGGATTCTTGCACCTCAAGCACGGACAGTGTGCACAATGGGCAGACAGCTCACGCTTTACCGACAGGCGCATACTGCCGCTATCCATGCGAGAGAAACTGATACAGACCGAGCGACTGCCCAACAAAGGCGAGCGTACACGAGTATTGGCACGACGACTGGACGGTGTGGACGAAAAGCTCGATGAGGGACCCCTGACCACCAATCTGGAAGAGATATTCCGCCCGATCAATATCTACGACAACGATATTCCCATCATGCTCAGTCGCTTTCCCAGCCCGATGAGCAGCACTTTTGCAACAAGTTTCTACAAGTACTTCATTGCCGATACTGTGCGAATAGAGGATGAGGATTGTATCGAAATGATTTTCTCTCCTTTCAATCCCGAGAGTGCAGGCTTTACGGGAAGACTCTGGATCGTCAAGAGCGATTATTCGTTACGTCGGATCATCCTGAACCTGCCGATATCGAGCAATGTGAACTGGGTGACCCACCTACGCATAGCACAAGATTTCCAACGGGTTCCCTGTATAGATGTTTCGGGACAAACGACCCGATACTATCGCGTACTGAAACGGCAGGATTTTCAGGCATTATTATCGGCTACTTCATTCATTCCTCAAGGGTTGGAAGTGGAGCAGAGCCGTATCCTTTCCGACTATCGCATCGGTGAAGGAAGCATTGGCAGGGATCCGTCTTCTGTCGGTTTTCTTGCTACCGATTCGGTTTACGATGCGGCAGCTCCTCGCGAAACGGATGGCTACTGGAATGTAATGAGACCGGAACCACTGCCTTCCACGGGGAAAAAGCTGTTGTCTTTCATGCATTATCTACGCAACGATCGTAGATTCAAGGCATCTACCACCATCGCCAAAACACTGCTGACCGGTTATCTCGGATTCCCCATTGCGATGAACGACTCTATACGCCCCAAATTCGACTTCGGGCCTGTGCATACCCTCTTCGGAGGCAACAAAATCGAGGGCTTCCGTATGCGCGTAGGTGGCATGACACTGGCCGCTCTCAATCCGCACTTTTTCGCTCAAGGTTATATTGCATATGGGTTCAAGGACAAACGATGGAAGTGGAGAGGTGCTCTTACTTACTCCTCTATTCCTAAGAAGCTGTACATACAAGAATTTCCACATCGCAATCTCTCTTTCATCGCCTCGTACGATCTGTATACGCCGGGACAAGTAGTGGATCCTATCTTCAAGGACAACATAACGGTCATACTCGGCACTATGAACAATTTGCGCCGATCCTACGTCGAAGAATATCGGTTGGAATATGATAGAGACTGGGGGCCTGATTTCAGTACGATCATTTGGGGAAGCCACCGCCGAGACGAACCTACAGGCACACTACGCTACGATCAGGTAGAGGCTGATGGTACGATACGGCCGATCCATTCGTACCGCGCCACGGAATTGGGGCTTACCCTCCGCTATGAACCGGGGCGTATTCCCTACAATGGTCGCAAAGGGCCGAACACGGCTTTCAATGTAGTGCGCCGATCTCCCGTGTTCGAACTGGAGCACCGCATGGCATTTTCAGGCCTGTTTGGAGGAGACTTCGGCTACCAGCGTACGGAATTCCGATACAAACATCACATTTGGCTCTCTCTTTTCGGAATGTTGGATGCCTCTGTTCGTGCAGGGCAAGTTTGGACACATGCTCCCTACCCTCTCTTGGAGATTCCACCGGTCAATGAGAGTTATACTCTGCAAAGCGGAGCATTTCAGTTGATGGAGCCATTGGAATTTATCGCTGACCGATACACGCAGTTTCATCTGACCTACCATCTGGAAGGTCTTATGCTCAATCGTATTCCGCTCATCAAACGGTTGGCTTGGCGCGAATTAATTTCTTTTCATGGCATGTGGGGAGATCTTACTCCCCATAATAAGCCCGGATCGGTCGGTAGTTTTCTCTTTCCCGAAAATACTATCCCCATGAATCATACATGGTACATGGAAGGGAGCATAGGTCTGGAGAATATCTTCCGGCTCCTGCGCATCGAATACTTCCGACGCTTCACCCAATTACAAACGACTCCGAATAAATGGGGAGTCCGTGCTCGCTTCCAGATCACTTTC","10.20","24.65","100664","MQTPAMSAISKKSALSLFFLSLFLLGMLPLAGQTRFAGVVLDSATLEPIPYASVFCADNKGVGTVTSAAGMFDLTSPHNDRTIIISSTGYRKQTFSLRSSEKRNMHCRILLASEELQLSSVVVKAKRRKYSKKNNPAVDLIRKAIAAKDSNRIESAPAYSYRTYERILVSDDDFRSDEGFLHLKHGQCAQWADSSRFTDRRILPLSMREKLIQTERLPNKGERTRVLARRLDGVDEKLDEGPLTTNLEEIFRPINIYDNDIPIMLSRFPSPMSSTFATSFYKYFIADTVRIEDEDCIEMIFSPFNPESAGFTGRLWIVKSDYSLRRIILNLPISSNVNWVTHLRIAQDFQRVPCIDVSGQTTRYYRVLKRQDFQALLSATSFIPQGLEVEQSRILSDYRIGEGSIGRDPSSVGFLATDSVYDAAAPRETDGYWNVMRPEPLPSTGKKLLSFMHYLRNDRRFKASTTIAKTLLTGYLGFPIAMNDSIRPKFDFGPVHTLFGGNKIEGFRMRVGGMTLAALNPHFFAQGYIAYGFKDKRWKWRGALTYSSIPKKLYIQEFPHRNLSFIASYDLYTPGQVVDPIFKDNITVILGTMNNLRRSYVEEYRLEYDRDWGPDFSTIIWGSHRRDEPTGTLRYDQVEADGTIRPIHSYRATELGLTLRYEPGRIPYNGRKGPNTAFNVVRRSPVFELEHRMAFSGLFGGDFGYQRTEFRYKHHIWLSLFGMLDASVRAGQVWTHAPYPLLEIPPVNESYTLQSGAFQLMEPLEFIADRYTQFHLTYHLEGLMLNRIPLIKRLAWRELISFHGMWGDLTPHNKPGSVGSFLFPENTIPMNHTWYMEGSIGLENIFRLLRIEYFRRFTQLQTTPNKWGVRARFQITF","840767 838137","TIGR ID: PG0788","conserved hypothetical protein","Cytoplasm","No significant hits found other than to BT1204.","
InterPro
IPR008969
Domain
Carboxypeptidase regulatory region
SSF49464\"[35-114]TCarboxypepD_reg


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Dec 4 11:49:10 2003","Thu Dec 4 11:49:10 2003","Wed Jan 3 17:37:02 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 18-694 are 21% similar to PG0981, another hypothetical protein.Residues 18-138 are 28% similar to a short domain of PG1752, ton-B linked outer membrane receptor.","Tue Apr 3 15:14:29 MDT 2001","Tue Apr 3 15:14:29 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Apr 3 15:14:29 MDT 2001","34540571","","","","","","1","","","PG0788" "PG0710","841509","840796","714","ATGCACCGGATCAGCTTTGACGTACCTATTCTGCATCATTGTCCGGCTTTTCGCGTAGGAGTGGTAACGGCCAAAGTTGCAGCAGGCCGGTCGCCATCCACTCTTATAGATGAGATGAACGGAGAGGCTGATCGGCTGATACAGACTTGCGACCTCCCGGCCATCAAAGAAATCCCTGCCATAGCAGCCACACGCAGCTGCTACAAACGTACCGGCAAGGATCCTAACCGCTACAGGCCGTCTGCCGAGCAGTTGTCCCGACGTGTAGTACGCGGATTGGGGCTTTATTATATCAATGCTTTGGTGGACATAGGCAACCTTTTATCTCTTCGTACAGGGTACTCTATCGGGGTATTCGACCGTGATAAGGTAGGCTCCGACATTGTATTCGGCGTGGGATATGCAGACGAACCTTTTGTCGGAATCGGACGTGGCGAATTGAATATCGAAGGCCTGCCTGTCTATCGCGACGAGAACGGTGCTTTCGCCACTCCTACCAGCGACCACGAACGAACGAGCGTGGACGACATCACGAAGAATACGCTCATATTCATCAATGATTTCGGTGTGGATCGGACTCATTCGGACTGTCTCGAAGAAGCAGTCGCTGAAGCAGTACACTTGCTCAAGCTTTACGCCGGTGCTTCGGACATAAGTACACAGATCATCAGTGCCGAAGATGGTGCCGATCCGGTATTTTTGACTATTCCGTAT","5.00","-7.74","25941","MHRISFDVPILHHCPAFRVGVVTAKVAAGRSPSTLIDEMNGEADRLIQTCDLPAIKEIPAIAATRSCYKRTGKDPNRYRPSAEQLSRRVVRGLGLYYINALVDIGNLLSLRTGYSIGVFDRDKVGSDIVFGVGYADEPFVGIGRGELNIEGLPVYRDENGAFATPTSDHERTSVDDITKNTLIFINDFGVDRTHSDCLEEAVAEAVHLLKLYAGASDISTQIISAEDGADPVFLTIPY","841509 840796 [Delay by 63 929 80 0]","TIGR ID: PG0789","conserved hypothetical protein","Cytoplasm","Gapped BLAST locates three hits, 30% similar to emb|CAB57644 in Sulfolobus solfataricus, 27% similar to dbj|BAB04738 in Bacillus halodurans and 30% similar to dbj|BAA80800 in Aeropyrum pernix. Also there are several very weak hits to phenylalanyl-tRNA synthetase beta subunit.","
InterPro
IPR005146
Domain
B3/4
PF03483\"[66-214]TB3_4
noIPR
unintegrated
unintegrated
SSF56037\"[46-228]TSSF56037


","BeTs to 6 clades of COG0072COG name: Phenylalanyl-tRNA synthetase beta subunitFunctional Class: JThe phylogenetic pattern of COG0072 is amtkYqvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Jan 3 17:28:22 2001","Wed Jan 3 17:31:33 2001","Wed Jan 3 17:28:22 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540572","","","","","","1","","","PG0789" "PG0711","842674","841493","1182","ATGGCAGCAGAGTCCAATTTCGTCGATTACGTCAAGATATACTGCCGTTCGGGCAAGGGAGGGAGAGGCTCTACGCACTTCCGCAGGGAGAAGTATATCCCCAAAGGTGGCCCGGACGGAGGCGACGGAGGCCGTGGCGGACATGTCTTTCTCCGTGGCAATCGGAATTATTGGACACTGCTGCATCTGCGCTATGACCGTCATATCATGGCTACGAACGGACAGAGCGGCGGAGCCAAGCGAAGTACCGGAGCGAACGGAGAGGATCGTATCATAGAAGTCCCCTGCGGGACGGCTGTTTACGATGCCGATACGGGTGAGTTTATCACAGACATTACCGAGCACGGACAGCAGGTGATGCTGCTCCAGGGAGGCCGAGGCGGACACGGCAATACGTTCTTCAAGACCGCTACCAATCAGGCCCCCCGATATGCTCAGCCCGGCGAGCCGGCACAGGAGCGTATGGTGATCATGCAGCTCAAGATGCTGGCCGATGTCGGTCTGGTCGGATTTCCCAATGCCGGCAAATCGACACTGCTATCAGTGCTCACTGCTGCAAAGCCGAAGATCGCCAACTATCCGTTCACTACGCTGGAACCTAATCTCGGTATCGTAGCCTATCGAGACAAGCGATCCTTTGTAATGGCGGACATCCCGGGCATCATCGAAGGGGCTTCATCGGGGAAAGGACTGGGACTGCGTTTCCTGCGGCACATCGAAAGGAACGCTTTGCTCCTCTTCATGATTCCGGCCGATACGGACAACATTGCCAAGGAATACGAGATACTCAGTCGGGAGCTGGTGGCATACAACGAAGAGTTGGCACAAAAGCGCAAAGTGCTGGCCATAACCAAGTGCGACCTCATCGACGAAGAGCTGTGCGAGATGCTTCGGGAGGAGCTGCCGACAGGCTTGCCCGTAGTTTTCATTTCTGCCGTGGCACAACAGGGACTGGAAGAGCTAAAGGATACCTTGTGGAAAGAACTCAGCAAGGAGACCCTTCACGAGCCGGACAGCATAGTACGCCAAGCTCTTGATTTGACCAGTCTTACATGGGATGAGGAGGACGATTTGTTCCCGGCATCGATAGAAGACGACGAGGATGAAGAAGGTCTCGACGACATTGATTTTGATTTGGAGATCGAATACGATAACGAAGGAGACGATGCACCGGATCAGCTT","4.60","-23.21","43589","MAAESNFVDYVKIYCRSGKGGRGSTHFRREKYIPKGGPDGGDGGRGGHVFLRGNRNYWTLLHLRYDRHIMATNGQSGGAKRSTGANGEDRIIEVPCGTAVYDADTGEFITDITEHGQQVMLLQGGRGGHGNTFFKTATNQAPRYAQPGEPAQERMVIMQLKMLADVGLVGFPNAGKSTLLSVLTAAKPKIANYPFTTLEPNLGIVAYRDKRSFVMADIPGIIEGASSGKGLGLRFLRHIERNALLLFMIPADTDNIAKEYEILSRELVAYNEELAQKRKVLAITKCDLIDEELCEMLREELPTGLPVVFISAVAQQGLEELKDTLWKELSKETLHEPDSIVRQALDLTSLTWDEEDDLFPASIEDDEDEEGLDDIDFDLEIEYDNEGDDAPDQL","842674 841493","TIGR ID: PG0790","GTP-binding protein","Cytoplasm","Gapped BLAST shows numerous strong hits to GTP-binding proteins, e.g. 47% similarity to a GTP-binding protein in Caulobacter crescentus (gb|AAB81507).This sequence is similar to BT4388.","
InterPro
IPR002917
Domain
GTP-binding protein, HSR1-related
PF01926\"[164-287]TMMR_HSR1
InterPro
IPR005225
Domain
Small GTP-binding protein domain
TIGR00231\"[161-327]Tsmall_GTP
InterPro
IPR006073
Domain
GTP1/OBG
PR00326\"[166-186]T\"[187-205]T\"[215-230]T\"[232-250]TGTP1OBG
InterPro
IPR006074
Domain
GTP1/OBG domain
PS00905\"[217-230]TGTP1_OBG
InterPro
IPR006169
Domain
GTP1/OBG subdomain
PF01018\"[7-162]TGTP1_OBG
InterPro
IPR014100
Family
GTP-binding protein Obg/CgtA
TIGR02729\"[7-290]TObg_CgtA
noIPR
unintegrated
unintegrated
G3DSA:2.70.210.12\"[6-162]TG3DSA:2.70.210.12
G3DSA:3.40.50.300\"[162-298]TG3DSA:3.40.50.300
PTHR11702\"[4-342]TPTHR11702
PTHR11702:SF3\"[4-342]TPTHR11702:SF3
SSF52540\"[162-337]TSSF52540
SSF82051\"[6-162]TSSF82051


","BeTs to 13 clades of COG0536COG name: Predicted GTPaseFunctional Class: RThe phylogenetic pattern of COG0536 is ----yqvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB000765 (GTP1/OBG family) with a combined E-value of 2.2e-64. IPB000765A 41-86 IPB000765B 158-209 IPB000765C 219-240 IPB000765D 270-290","Residues 7-165 are 45% similar to a (PROTEIN GTP-BINDING OBG INTERGENIC REGION PROBABLE GTP) protein domain (PD004315) which is seen in O67849_AQUAE.Residues 166-329 are 32% similar to a (PROTEIN GTP-BINDING LIPOPROTEIN PRENYLATION RAS-RELATED) protein domain (PD000015) which is seen in O59046_PYRHO.Residues 166-204 are 87% similar to a (PROTEIN GTP-BINDING INTERGENIC REGION HOMOLOG ERA IRON) protein domain (PD000414) which is seen in O67849_AQUAE.Residues 213-299 are 54% similar to a (PROTEIN GTP-BINDING INTERGENIC REGION PROBABLE) protein domain (PD001145) which is seen in O30861_CAUCR.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Mar 22 14:05:02 MST 2000","Mon Jan 5 14:34:14 2004","Wed Jan 3 17:41:35 2001","Tue Apr 3 15:18:08 MDT 2001","Tue Apr 3 15:18:08 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 162-278 are 35% similar to PG0042, a conserved GTP-binding protein.Residues 166-344 are 25% similar to PG0786, thiophene and furan oxidation protein (GTPase).","Tue Apr 3 15:18:08 MDT 2001","Tue Apr 3 15:18:08 MDT 2001","-64% similar to PDB:1LNZ Structure of the Obg GTP-binding protein (E_value = 1.3E_76);-64% similar to PDB:1UDX Crystal structure of the conserved protein TT1381 from Thermus thermophilus HB8 (E_value = 2.1E_74);-42% similar to PDB:2DBY Crystal structure of the GTP-binding protein YchF in complexed with GDP (E_value = 1.8E_14);-42% similar to PDB:2DWQ Thermus thermophilus YchF GTP-binding protein (E_value = 1.8E_14);-57% similar to PDB:1JAL YCHF PROTEIN (HI0393) (E_value = 2.0E_13);","","","Residues 20 to 289 (E-value = 5.5e-92) place PG0711 in the GTP1_OBG family which is described as GTP1/OBG family (PF01018)","Tue Apr 3 15:18:08 MDT 2001","34540573","","","","","","1","","","PG0790" "PG0712","843268","842687","582","ATGCTTAACGTACTAATCTTCGGTGCTCCCGGTTCCGGGAAGGGCACCCAAAGCGAAGAACTGATCCGTCGATATGGATTCCGGCATATTTCAACCGGAGAGTTGCTTCGTGCCGAAATCAAAGCTCAGACCGAACTGGGCCAAGCAGCAGCCGGCTACATCAACGAGGGACACCTCGTACCTGACAGCCTGATCGTGGACATGATGGAAAAGCTCATCAGCACTTTGGTCGATACCGAGGGGATTATCTTCGACGGATTTCCACGTACCATTCCCCAAGCAGAAGCCATGGAGACGATGCTCGCACATCATGGATGGAAGGTGGACATAGTGCTGAATCTGCAAGTACCCGAGGAAATGCTCATCGAACGCCTCCTGAACAGAGGAAAGGTCAGTGGTCGATCGGATGACAACATCGAGACCATTCGCAAGCGTCTGGATGTATATGCCAACGAGACTGCACCATTAGTGGATTTCTTCACCCGAAAGAATGTGCTGCACAACGTGGTAGGTACGGGGACGATAGAAGAGATCGCTTTGCGTATCGCTCCCATTGTGGACAAGTTCCGCAAAGTCTCTAAC","5.70","-3.79","21593","MLNVLIFGAPGSGKGTQSEELIRRYGFRHISTGELLRAEIKAQTELGQAAAGYINEGHLVPDSLIVDMMEKLISTLVDTEGIIFDGFPRTIPQAEAMETMLAHHGWKVDIVLNLQVPEEMLIERLLNRGKVSGRSDDNIETIRKRLDVYANETAPLVDFFTRKNVLHNVVGTGTIEEIALRIAPIVDKFRKVSN","843268 842687","TIGR ID: PG0791","adenylate kinase","Cytoplasm, Periplasm","Gapped BLAST shows numerous strong hits to adenylate kinase proteins, e.g. 43% similarity to a adenylate kinase in Leptospira interrogans (sp|Q9XD15|KAD_LEPIN ).This sequence is similar to CT128.","
InterPro
IPR000850
Family
Adenylate kinase
PR00094\"[5-18]T\"[33-47]T\"[82-98]T\"[134-149]T\"[151-165]TADENYLTKNASE
PTHR23359\"[1-184]TAdenylate_kin
PF00406\"[6-165]TADK
PS00113\"[82-93]TADENYLATE_KINASE
InterPro
IPR006259
Family
Adenylate kinase, subfamily
TIGR01351\"[3-187]Tadk
InterPro
IPR011769
Domain
Adenylate/cytidine kinase, N-terminal
PD000657\"[4-46]TAdenylate_kin
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[2-191]TG3DSA:3.40.50.300
PTHR23359:SF13\"[1-184]TPTHR23359:SF13
SSF52540\"[1-190]TSSF52540


","BeTs to 15 clades of COG0563COG name: Adenylate kinase/yeast uridylate kinaseFunctional Class: FThe phylogenetic pattern of COG0563 is a--kYqvCebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB000850 (Adenylate kinase) with a combined E-value of 1.2e-33. IPB000850A 5-32 IPB000850B 79-91 IPB000850D 131-160","Residues 8-165 are 42% similar to a (KINASE ADENYLATE TRANSFERASE ATP-BINDING) protein domain (PD000657) which is seen in KAD_AQUAE.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Mar 22 12:39:04 MST 2000","Wed Jan 3 17:55:29 2001","Wed Jan 3 17:55:29 2001","Wed May 23 12:16:13 MDT 2001","Wed May 23 12:16:13 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed May 23 12:16:13 MDT 2001","-58% similar to PDB:1P3J Adenylate Kinase from Bacillus subtilis (E_value = 2.1E_37);-60% similar to PDB:1S3G Crystal structure of adenylate kinase from Bacillus globisporus (E_value = 2.8E_37);-59% similar to PDB:2EU8 Crystal structure of a thermostable mutant of Bacillus subtilis Adenylate Kinase (Q199R) (E_value = 4.7E_37);-58% similar to PDB:1ZIN ADENYLATE KINASE WITH BOUND AP5A (E_value = 2.6E_35);-58% similar to PDB:1ZIO PHOSPHOTRANSFERASE (E_value = 2.6E_35);","","","Residues 6 to 165 (E-value = 1.2e-70) place PG0712 in the ADK family which is described as Adenylate kinase (PF00406)","Wed May 23 12:16:13 MDT 2001","34540574","","","","","","1","","","PG0791" "PG0713","843805","843272","534","ATGAGAACAATCAAACTGAAAGACAAAGAGTTTGAGATTTACATTCCGGCGACTCGCATACATGAAGCCATTAAGAGGATGGCTGCCGAGATCAAACGGGATCTGCATGAGGACAATCCCCTATTCGTCTGTATCATGAACGGCTCGTTTATGTTTGCAGCCGAACTGATGCAGGCTCTCGATGAGAGTTATCAAGTGGATTTCGCCCGCTACTCCAGTTATTGCGGTATGCAGAGCACATTCGTGCTCAAGGAGATTATGCCCGTGACGGCCGACATGCGTGGCAGGACAGTGGTCATCGTAGAAGATCTGATTGATTCGGGTTATACGATGAGTTGCGTAAAGGAGAATTTCTACGAGCTTGGAGCCAAAGAGGTGCGCATAGCAGCTATGCTGACCAAACCCGCTGCACTCAAATGCGATATCCATACCGATTATGTAGGCTTGGAGATCGGCAATGACTTTATCGTAGGACACGGCCTTGACTATGATGATCTGGGACGCATGTACCAGGACATCTATAAAATAAAAGAA","4.90","-7.22","20408","MRTIKLKDKEFEIYIPATRIHEAIKRMAAEIKRDLHEDNPLFVCIMNGSFMFAAELMQALDESYQVDFARYSSYCGMQSTFVLKEIMPVTADMRGRTVVIVEDLIDSGYTMSCVKENFYELGAKEVRIAAMLTKPAALKCDIHTDYVGLEIGNDFIVGHGLDYDDLGRMYQDIYKIKE","843814 843272","TIGR ID: PG0792","hypoxanthine-guanine phosphoribosyltransferase","Cytoplasm","Gapped BLAST shows numerous strong hits to hypoxanthine-guanine phosphoribosyltransferases, e.g. 46% similarity to putative hypoxanthine guanine phosphoribosyltransferase in Bacteroides fragilis (gb|AAD40728.1|AF048749_24).","
InterPro
IPR000836
Domain
Phosphoribosyltransferase
PF00156\"[11-152]TPribosyltran
InterPro
IPR002375
Family
Purine/pyrimidine phosphoribosyl transferase
PS00103\"[98-110]TPUR_PYR_PR_TRANSFER
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.2020\"[4-176]TG3DSA:3.40.50.2020
PTHR22573\"[20-178]TPTHR22573
PTHR22573:SF9\"[20-178]TPTHR22573:SF9
SSF53271\"[7-178]TSSF53271


","BeTs to 6 clades of COG0634COG name: Hypoxanthine-guanine phosphoribosyltransferaseFunctional Class: FThe phylogenetic pattern of COG0634 is -----qv-ebrh--gp-----Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 13:35:40 MDT 2001","","Thu Jun 14 13:35:40 MDT 2001","Thu Jun 14 13:35:40 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:35:40 MDT 2001","Thu Jun 14 13:35:40 MDT 2001","","","Wed Jan 3 18:03:37 2001","Wed Jan 3 18:07:55 2001","Wed Jan 3 18:03:37 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu May 3 18:27:51 MDT 2001","-58% similar to PDB:1G9S CRYSTAL STRUCTURE OF A COMPLEX BETWEEN E.COLI HPRT AND IMP (E_value = 1.1E_21);-58% similar to PDB:1G9T CRYSTAL STRUCTURE OF E.COLI HPRT-GMP COMPLEX (E_value = 1.1E_21);-58% similar to PDB:1GRV HYPOXANTHINE PHOSPHORIBOSYLTRANSFERASE FROM E. COLI (E_value = 1.1E_21);-57% similar to PDB:1J7J Crystal Structure of the HPRT from Salmonella typhimurium (E_value = 2.4E_21);-55% similar to PDB:1R3U Crystal Structure of Hypoxanthine-Guanine Phosphoribosyltransferase from Thermoanaerobacter tengcongensis (E_value = 7.1E_21);","","","Residues 11 to 152 (E-value = 1.5e-10) place PG0713 in the Pribosyltran family which is described as Phosphoribosyl transferase domain (PF00156)","Thu May 3 18:27:51 MDT 2001","34540575","","","","","","1","","","PG0792" "PG0713.1","844384","843980","405","TTGGTTTATAATTCTTCCAAAGGTACAGACTTTTCCATGCAACCGACTCTTTTCGGAAAAATTCACGGTTATTTCCATTCCGCCCGAGAACCTCTCCACAGAGAAAAAGTCGCCATTATACCATTAGGGATCAATAGAAAAGAACCCGTCTCTGACTTATTAAACGAAGTGAAGTGTAGTACTTGTGGCAGCTGTTTTTATCTGATCCGACCTACTTTCGACATTGCACATCACCCTTGCAGGCACATGCTCATAACCTGCCAACATAAAAACACGAACCGGAAACGCTCCGACTGTGGCACGTGTTTTCTGAAAAAGTGGAACCGCAACTTTTTCGTTCCGGCACGTGTTTTTTTCACTTCTCGCACCAAAAGAAAAATTTTCCCACGCCACGTTTTTAGGAGG","","","15868","LVYNSSKGTDFSMQPTLFGKIHGYFHSAREPLHREKVAIIPLGINRKEPVSDLLNEVKCSTCGSCFYLIRPTFDIAHHPCRHMLITCQHKNTNRKRSDCGTCFLKKWNRNFFVPARVFFTSRTKRKIFPRHVFRR","","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No significant hits.","
InterPro
IPR007087
Domain
Zinc finger, C2H2-type
PS00028\"[62-82]?ZINC_FINGER_C2H2_1


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Wed Jan 3 18:12:58 2001","Wed Jan 3 18:12:58 2001","Wed Jan 3 18:12:58 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","The carboxy terminal 45 residues of PG0713.1 show similarity to segments of PG1694.1 and PG0428.1.","Wed Jan 3 18:12:58 2001","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG0714","844429","846393","1965","ATGCTCAAGCACGATTTGGACTATTTGGAATTGCTCTCGGAGAGTTTCCCGACAGCGACGGAAGCAGCTACGGAGATTATCAATCTCGAAGCTATATTGAATCTGCCTAAAGGAACAGAACACTTCCTGGCGGACATTCACGGCGAATACGAAGCCTTTATCCATGTGCTCAAGAATGCGTCCGGTAGTATTCGGAGAAAGGTAGACGAGGTCTTCGGTGGTCAGTTGCGCCAAAATCAGAAGCGAGAGCTGTGCACCCTGATCTATTATCCTCGCGAGAAACTCGAACTCGTGAAGCAAAGTGATGAGCGGATGGAGGACTGGTATATGGTCACGCTGAATCAGCTGATCAAAGTGTGTCAGAAAGCTGCAGAGAAATATACTCGCTCCAAGGTACGTAAGACCCTTCCTCCCAAGTACAGCTATATCATTCAGGAGCTACTCCACGAAGATGGTGTCAATCCCAATAAATCGGCTTATATCAGCAGCATCTTTTCCTCTATAATATCCACAGGGTGTGCCGATGACTTTATCATTGCCATTAGTGAGACCATCCAGCGGCTGGTCATCGACCATCTGCACGTGGTAGGGGATGTCTTCGACCGTGGCCCCGGAGCACATATCATCATGGATACCCTTATGAAGTATCATCATTTCGATATACAGTGGGGCAATCATGACATGCTGTGGATGGGAGCTGCTGTGGGCAATGCCTCCTGTATGGCCAATGTGGTGCGTATAGCACTGCGCTATGCCAATTTGGATACGCTGGAGAGCGGGTACGGTATCAACCTTTTGCCCTTGGCGCGTTTTGCCATGGACACTTATGCGGACGATCCCTGTACCGTATTTAAACCCAAACTGGCTCAGGCCGACCAGACGTATGATGACAAGAGCGTCTATCTGATCAGTCAGATGCACAAAGCCATATCTATCATTCAGTTCAAGCTGGAGCACCAGATCATAGCCCGTCATCCGGAGTACAAGATGGACAATCGGGATTTGTTCCATCTGGTGAACTTCACCGATGGTACCATCAAGCTGTCGAGTGGCGTATATCCGATGTTGGATATGAATTTCCCGACCGTGGATCCGGCCGATCCGTATGCACTGACAGAGCAAGAGCAGAATATCGTAGATCGTCTGATGGGCTGTTTTATGCGGAGTGAAAAGCTGCAAAACCATCTCAAATGCCTCTATCGTCATGGCAGTATGTACCTGACGTATAATATGAATCTGCTCTACCATGCTTCTATCCCTCTGAACAAGGATAAGTCGCTCAAGAAGGTACGGGTAGGGGACAAGACCTATGCCGGACGCGAATTGCTCGATAAGGTGGAAGAGATGATCCGTACCGCATATGTGGCTCCCGAGAAAAGCGATCAGAGACTTGCGGCTGTGGACTACATGTGGTACCTCTGGTGCGGACCGGATTCTCCTCTTTTCGACAAAGCTATGATGACTACTTTCGAGCGTTACTTCATCGAAGATAAGGCTACGCATCATGAGGAAAAGGGTTACTACTACGTCTATCGTCAGGAGAAAGCCGTTTGTGAGATGATCCTCAAAGAGTTTGGGCTTGAAGGCCCTGATACGCATATAATCAACGGGCACGTTCCGGTGAAGGCCAAGAAAGGGGAGCTTCCTATCGGAGCTGAAGGCAAACTGATGTTGATAGATGGCGGATTCAGCAAGGCATATCAGTCAAGTACGGGGATCGCCGGCTATACGCTGATATTCAACTCTCAGGGATTGCATCTTGTGCAGCACGAACCGTTTAGTTCCACACGCAAGGCTATCGAAGAGATGGAGGACATCAAGAGTATCACGGTGGTACGTGAGGTCACATCCCATCGTATGCTGGTGAAGGATACGGACAATGGCCACTTGCTGAGCAAGCAGGTTGAAAACCTCAAAAAACTCCTTCAGGCGTACAGCTACGGACTGATCAAGGAACGAAAAAAA","6.80","-3.11","75062","MLKHDLDYLELLSESFPTATEAATEIINLEAILNLPKGTEHFLADIHGEYEAFIHVLKNASGSIRRKVDEVFGGQLRQNQKRELCTLIYYPREKLELVKQSDERMEDWYMVTLNQLIKVCQKAAEKYTRSKVRKTLPPKYSYIIQELLHEDGVNPNKSAYISSIFSSIISTGCADDFIIAISETIQRLVIDHLHVVGDVFDRGPGAHIIMDTLMKYHHFDIQWGNHDMLWMGAAVGNASCMANVVRIALRYANLDTLESGYGINLLPLARFAMDTYADDPCTVFKPKLAQADQTYDDKSVYLISQMHKAISIIQFKLEHQIIARHPEYKMDNRDLFHLVNFTDGTIKLSSGVYPMLDMNFPTVDPADPYALTEQEQNIVDRLMGCFMRSEKLQNHLKCLYRHGSMYLTYNMNLLYHASIPLNKDKSLKKVRVGDKTYAGRELLDKVEEMIRTAYVAPEKSDQRLAAVDYMWYLWCGPDSPLFDKAMMTTFERYFIEDKATHHEEKGYYYVYRQEKAVCEMILKEFGLEGPDTHIINGHVPVKAKKGELPIGAEGKLMLIDGGFSKAYQSSTGIAGYTLIFNSQGLHLVQHEPFSSTRKAIEEMEDIKSITVVREVTSHRMLVKDTDNGHLLSKQVENLKKLLQAYSYGLIKERKK","844390 846393","TIGR ID: PG0793","fructose-1,6-bisphosphatase","Cytoplasm","Gapped BLAST shows 45% similarity over 643 aa to fructose-1,6-bisphosphatase in Bacillus subtilis (emb|CAB16056).This sequence is similar to BT1228.","
InterPro
IPR009164
Family
Fructose-1,6-bisphosphatase, Bacillus type
PIRSF000906\"[5-650]TFBPtase_Bacill
PF06874\"[6-648]TFBPase_2
noIPR
unintegrated
unintegrated
SSF56300\"[26-562]TSSF56300


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 8-647 are 45% similar to a (FUNCTION UNKNO N HYDROLASE) protein domain (PD146816) which is seen in Q45597_BACSU.","","Thu Jun 14 13:36:43 MDT 2001","","Thu Jun 14 13:36:43 MDT 2001","Thu Jun 14 13:36:43 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:36:43 MDT 2001","Thu Jun 14 13:36:43 MDT 2001","","","Wed Jan 3 18:19:54 2001","Thu Dec 4 12:02:13 2003","Wed Jan 3 18:18:17 2001","","Thu Dec 4 12:02:13 2003","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu May 3 18:25:22 MDT 2001","-42% similar to PDB:2B0J The crystal structure of the apoenzyme of the iron-sulfur-cluster-free hydrogenase (Hmd) (E_value = );-43% similar to PDB:1GEH CRYSTAL STRUCTURE OF ARCHAEAL RUBISCO (RIBULOSE 1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE) (E_value = );-50% similar to PDB:1W1W SC SMC1HD:SCC1-C COMPLEX, ATPGS (E_value = );","","","No significant hits to the Pfam 11.0 database","Thu May 3 18:25:22 MDT 2001","34540576","","","","","","1","","","PG0793" "PG0715","846552","848909","2358","TTGAGTAAACTAACCAATAAGATCGTCCGGATACTCTGGACTGTCTTCATTGCCGGTTGGGCTGTTATCGGCATCCTGTTCCTGTTTATTGCTACCGGTATGATCGGCTATATGCCGCCTATCGAGCATTTGCAGAATCCCATTGACAAGTATGCATCGCAGCTTATATCTGCCGATGGGAAGGTGTTCGGTTCTTATGCCCACAGCGGTGACAATCGGATATATACCAGATACAACGAGATTTCACCCGATCTGATCAAGGCTCTCATCGCTACGGAGGATGTCCGCTTCCGTAAGCATTCGGGAATAGACAGCAAAGGTCTGTTCCGAGCCGTGGTCAAACGCGGTATCCTCAATCAAAAAAGCGGTGGAGGGGGTAGTACCATTACCCAGCAACTGGCCAAACTCCTTTATTCGCCGCGCACGGAGACCAAACTCGGACGCCTCTTCCAAAAACCGATCGAGTGGGTTATCGCCGTGAAGCTGGAGCGTTTTTATACGAAGGAAGAGATCATCACCATGTATCTCAACTACTTCGACTTCCTGTACAATGCCGTTGGGATCAAGTCTGCGGCTTATACCTACTTCGGTAAGCAGCCGGCTGATTTGAAGATAGAGGAGGCAGCCGTTCTGGTCGGTATGTGCAAGAATCCGGCCTATTATAATCCCGTTTTGCATGGGGAGACAGAACGTTGCCGAGGACGCCGCAATATCGTTCTGGAGCAGATGTACAAGGCCAAATATATCACTAAAGCAGAATGCGATTCTCTCCAAAAGCTTCCGTTGGTCACATCTTTTCATCGGATTACGCATCGCGATGGCGAAGCTCCTTATTTCAGGGAGCGTCTGAGGCAGGTGCTTATGGCCAAAAAACCTGAGCGCAAAAATTATTTGGCTTGGCAGGATGATCAGTATCGAGCCGATTCCATTGCTTGGGAGACTGATCCGGTCTATGGCTGGTGCAATAAGAACAAGAAAGCCGATGGCTCCAACTATAACATCTATACCGATGGTCTCAAGATCTACACGACCATAGATCTGAGGATGCAGCAGTATGCGGAAGAAGCCATGGTCAAGCAGATGAAAGAAGTGTTGCAGCCGATATTCGACAAGGAAAAAAGAGGACGCTCGTATGCTCCTTTCTCCAGGGATATTACTTCGGACGAACAGCGAAGTATTTTGCTCCGGGCAATGAAACAAACCGATCGCTGGCGAGAGATGAAGAAAGCCGGCATATCGGAGTCCGAGATCCGTGCTTCTTTCAACAAGAAACGAAAGATGCAGGTTTGGAATTGGCGAGGAACGATCGATACGGTTATGTCACCGCTCGACTCCATCAAGTATCTCAAGGGAATCTTGCGAACCGGATTCATGGCCATGAATCCGCACAACGGACATATTAAGGCGTATGTGGGAGGAATTAATTTCCGTAATTTCCAATACGATATGGTTAGTCAAGGACGTCGCCAGGTGGGATCGACTATCAAACCATTCCTGTACTCCCTCTCCATGCTCGAAGGAATATCGCCTTGCGATGAGATGCTCCATGTATCCCAGACCTTATTCACCGAATCAGGAAAGGCTTGGACACCGAAGAATACGGGTGCCAGACGGACAGGCGAAATGGTGAGTATCAAATGGGGGTTGCAGAACTCTTCCAACTGGGTTACGGCCTATCTGATGGGACGTACTTCTCCCTACACTTTTGTCCGCTTGTTGAGGTCTTACGGCTTGAGCGGATATTTGGAACCCAGCCTCTCCATCTGTTTGGGTACACCGGACGTGTCGGTGCAGGAGATGGTGAGTGCCTATACCACCTTTGTCAATAAGGGTATTCGGGTCAATCCTTTGCCTATAACGCGAATAGAGGATCAGTATGGTAATGTGGTGGCTCAGTTCTCACCGAATATGGTGGAAGTACTCCCACCTGATGCGGCATACAAGATGCTCTATATGTTGAAGTCCGTAGTCGATGGCGGTACCGGTAGCAGACTGAGGTATCGCTATGGATTCAAACTCGATATGGGAGGAAAGACGGGTACCACACAGAATAACAGTGATGGCTGGTTCGTAGGCTTTACTCCTTCTCTTGTGGCCGGCTGTTGGGTTGGCGGTGAGGATAGGTCTGTGCATTTCGACTCTATGTCCAATGGGCAGGGGGCTGCTTCTGCGTTGCCTATTTTTGCCGAATTTCTCAAGCGGGTATACGCTGATCCCAAGCTGGGCTATACAACGGAAGAGAAATTTGAGTTCCCACAGGATTTCCAGCCATGTATGATGGATCAGAATGTAGAGTATTTCGATGCAGGGGGCGGTGAAGTGGTGGAACCTTTACCGGAGATCCTTGTTGAATTACCA","10.00","23.09","89382","LSKLTNKIVRILWTVFIAGWAVIGILFLFIATGMIGYMPPIEHLQNPIDKYASQLISADGKVFGSYAHSGDNRIYTRYNEISPDLIKALIATEDVRFRKHSGIDSKGLFRAVVKRGILNQKSGGGGSTITQQLAKLLYSPRTETKLGRLFQKPIEWVIAVKLERFYTKEEIITMYLNYFDFLYNAVGIKSAAYTYFGKQPADLKIEEAAVLVGMCKNPAYYNPVLHGETERCRGRRNIVLEQMYKAKYITKAECDSLQKLPLVTSFHRITHRDGEAPYFRERLRQVLMAKKPERKNYLAWQDDQYRADSIAWETDPVYGWCNKNKKADGSNYNIYTDGLKIYTTIDLRMQQYAEEAMVKQMKEVLQPIFDKEKRGRSYAPFSRDITSDEQRSILLRAMKQTDRWREMKKAGISESEIRASFNKKRKMQVWNWRGTIDTVMSPLDSIKYLKGILRTGFMAMNPHNGHIKAYVGGINFRNFQYDMVSQGRRQVGSTIKPFLYSLSMLEGISPCDEMLHVSQTLFTESGKAWTPKNTGARRTGEMVSIKWGLQNSSNWVTAYLMGRTSPYTFVRLLRSYGLSGYLEPSLSICLGTPDVSVQEMVSAYTTFVNKGIRVNPLPITRIEDQYGNVVAQFSPNMVEVLPPDAAYKMLYMLKSVVDGGTGSRLRYRYGFKLDMGGKTGTTQNNSDGWFVGFTPSLVAGCWVGGEDRSVHFDSMSNGQGAASALPIFAEFLKRVYADPKLGYTTEEKFEFPQDFQPCMMDQNVEYFDAGGGEVVEPLPEILVELP","846552 848909","Penicillin-binding proteins are involved in cell wall biosynthesis and the target of penicillin. They are characterized by a transglycosylase domain on the amino terminus and a transpeptidase domain on the carboxyl terminus.TIGR ID: PG0794","penicillin-binding protein 1","Inner membrane, Outer membrane, Periplasm, Cytoplasm","Gapped BLAST shows numerous significant hits to penicillin-binding proteins 1, including 27% similarity to gb|AAF95776 in Vibrio cholerae, 30% similarity to gb|AAC06835 in Aquifex aeolicus and 28% similarity to gb|AAC35363 in Neisseria lactamica.This sequence is similar to BT0743.","
InterPro
IPR001264
Domain
Glycosyl transferase, family 51
PD001895\"[155-204]TQ7MW51_PORGI_Q7MW51;
PF00912\"[53-227]TTransgly
InterPro
IPR001460
Domain
Penicillin-binding protein, transpeptidase
PF00905\"[455-733]TTranspeptidase
noIPR
unintegrated
unintegrated
G3DSA:3.40.710.10\"[454-736]Tno description
signalp\"[1-36]?signal-peptide
tmhmm\"[15-37]?transmembrane_regions


","BeTs to 10 clades of COG0744COG name: Membrane carboxypeptidase (penicillin-binding protein)Functional Class: MThe phylogenetic pattern of COG0744 is -----qvCEBRHuj--ol--xNumber of proteins in this genome belonging to this COG is 1","***** PF00912 (Transglycosylase) with a combined E-value of 5.4e-35. PF00912A 79-106 PF00912B 124-148 PF00912C 155-196","Residues 432-578 are 32% similar to a (PROTEIN PENICILLIN-BINDING BINDING PENICILLIN CELL) protein domain (PD000435) which is seen in Q55683_SYNY3.Residues 652-741 are 36% similar to a (PROTEIN PENICILLIN-BINDING BINDING PENICILLIN 2B CELL) protein domain (PD011751) which is seen in O25319_HELPY.Residues 515-709 are 27% similar to a (PONA PROTEIN PBP1) protein domain (PD041961) which is seen in O69650_MYCTU.Residues 54-223 are 38% similar to a (PROTEIN PENICILLIN-BINDING PEPTIDOGLYCAN) protein domain (PD001895) which is seen in PBPA_ECOLI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Wed Dec 3 09:12:16 2003","Thu Jan 4 10:15:05 2001","Wed Dec 3 09:12:16 2003","Thu Jan 4 10:15:05 2001","Thu May 3 18:30:38 MDT 2001","Thu May 3 18:30:38 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu May 3 18:30:38 MDT 2001","-59% similar to PDB:2OQO Crystal structure of a peptidoglycan glycosyltransferase from a class A PBP: insight into bacterial cell wall synthesis (E_value = 6.5E_28);-48% similar to PDB:2OLU Structural Insight Into the Transglycosylation Step Of Bacterial Cell Wall Biosynthesis : Apoenzyme (E_value = 1.7E_20);-48% similar to PDB:2OLV Structural Insight Into the Transglycosylation Step Of Bacterial Cell Wall Biosynthesis : Donor Ligand Complex (E_value = 1.7E_20);-40% similar to PDB:2BG1 ACTIVE SITE RESTRUCTURING REGULATES LIGAND RECOGNITION IN CLASSA PENICILLIN-BINDING PROTEINS (PBPS) (E_value = 1.4E_14);-40% similar to PDB:2BG4 ACTIVE SITE RESTRUCTURING REGULATES LIGAND RECOGNITION IN CLASS A PENICILLIN-BINDING PROTEINS (PBPS) (E_value = 1.4E_14);","","","Residues 53 to 227 (E-value = 1.3e-64) place PG0715 in the Transgly family which is described as Transglycosylase (PF00912)Residues 455 to 733 (E-value = 2.5e-15) place PG0715 in the Transpeptidase family which is described as Penicillin binding protein transpeptidase domain (PF00905)","Wed Dec 3 09:12:16 2003","34540577","","","Ropp PA, Nicholas RA, Cloning and characterization of the ponA gene encoding penicillin-binding protein 1 from Neisseria gonorrhoeae and Neisseria meningitidis, J Bacteriol 1997 Apr;179(8):2783-7, PubMed: 9098083.","","Thu Jan 4 10:15:05 2001","1","","","PG0794" "PG0716","848954","849661","708","ATGAACTTTAACGAATTGAACAATCAATCCACTGTCTATGTGGATAGTACGCTCCAAACGACAACTATGCGCCATGTCTTTACATGGATGTTTGGTGCACTCGGTATCACGGCTCTTACAGCCATGCTCGTTGCTAAGAGTTCGTTGATATATACTATGATAATGAATCCCGGATTGCTGTGGGGATTGATCATTGCAGAGTTGGCTTTGGTCTTTATTCTTTCGGCACGTATCGGTAAGATGTCGTTCTTTACATCCTCTCTCTTGTTTACGATCTATTCTATTCTGAATGGAGTGACACTGAGCAGTATCTTTATCGTGTATACGATGACGAGCATTGCGGCCACATTTTTTATTACAGCCGGTATGTTCGGAGCCATGGCTCTGTGGGGATATTTTACCAAAAAAGATTTGAGCAAGTGGGGTAGTATTTTCTTTATGCTCCTGATCGGTTTGATTTTGGCCACTGTCGTGAATCTGTTCCTCCGTTCGGGTGCTATGGGCTTTATCTTCTCCATTGTCGGTGTGATCATCTTTACGGGCCTTACCGCTTTCGATGTGAACAAAATCAAGCAGATGCTGGCTCAAACGCAAGGATTCGAAGAGGGAGATGTAGTTCGCAAAGTAGCCCTGATGGGAGCCTTGACGCTCTATCTGGATTTCATCAATCTTTTCCTCTATCTGCTTCGCTTCTTCGGCCGAAGGGAC","10.40","5.22","26293","MNFNELNNQSTVYVDSTLQTTTMRHVFTWMFGALGITALTAMLVAKSSLIYTMIMNPGLLWGLIIAELALVFILSARIGKMSFFTSSLLFTIYSILNGVTLSSIFIVYTMTSIAATFFITAGMFGAMALWGYFTKKDLSKWGSIFFMLLIGLILATVVNLFLRSGAMGFIFSIVGVIIFTGLTAFDVNKIKQMLAQTQGFEEGDVVRKVALMGALTLYLDFINLFLYLLRFFGRRD","848954 849661","TIGR ID: PG0795","conserved hypothetical protein","Inner membrane, Cytoplasm","Numerous hits with gapped blast to hypothetical proteins from, i.e., E. coli (YBHL_ECOLI, gi: 3025001), Zymomonas mobilis (gi: 53541880), Rickettsia prowazekii (gi: 3860714), Chlamydia muridarum (gi: 7190243), among many others.This protein is similar to CT819, a predicted conserved hypothetical protein from Chlamydia trachomatis.","
InterPro
IPR006214
Family
Protein of unknown function UPF0005
PTHR23291\"[21-236]TUPF0005
PF01027\"[15-236]TUPF0005
noIPR
unintegrated
unintegrated
PTHR23291:SF6\"[21-236]TPTHR23291:SF6


","BeTs to 7 clades of COG0670COG name: Integral membrane protein YccA, interacts with FtsHFunctional Class:  RThe phylogenetic pattern of COG0670 is ----y--cEb-huj--o-inxNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 23-94 are 42% similar to a (PROTEIN CONSERVED INTEGRAL MEMBRANE) protein domain (PD035975) which is seen in YBHL_ECOLI.Residues 96-223 are 53% similar to a (PROTEIN TRANSMEMBRANE TEGT MEMBRANE PUTATIVE INTERGENIC) protein domain (PD003332) which is seen in YBHL_ECOLI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Mar 29 16:21:53 MST 2000","Fri Apr 7 12:37:06 MDT 2000","Fri Apr 7 12:33:58 MDT 2000","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Fri Apr 7 12:33:58 MDT 2000","","No significant hits to the PDB database (E-value < E-10).","","","Residues 15 to 236 (E-value = 1.9e-15) place PG0716 in the UPF0005 family which is described as Uncharacterised protein family UPF0005 (PF01027)","","34540578","","","","","","1","","","PG0795" "PG0717","852541","849767","2775","ATGGAATATAACTTTCAGGAAATAGAAAAGCGTGTGCAGGGACAGTGGCGCAAAGACAAGGTTTACCGCGTTGCGGAAGACACAAGTAAAAAACCTTTCTACGTGCTCGACATGTTTCCGTATCCTTCCGGAGCAGGACTGCATGTAGGGCATCCACTTGGTTATATAGCTTCCGATATTTTTTCGCGCTATAAGCGTTTGCGTGGATTCAATGTATTGCATCCGATGGGATATGATGCATTCGGCCTACCTGCCGAACAATATGCCATCCAAACCGGCCAACACCCCGAAAAAACAACAGAAGAAAATACAGCTCGCTATCGCGAGCAACTGGACAAAATCGGCTTTTCGTACGATTGGGAACGCGAGATTCGCACTTGTGATCCGAATTATTATAAATGGACACAGTGGGCTTTCCTGAAAATGTTCGACTCGTACTACTGCAATCAAGCACAACAGGCACGACCGATAAGCGAGCTGATCGAAGTTTTTGCCCGACAAGGTAATGATGGTCTCAATGTGGCATGCGGCGAAGGAGTCCGTTTCACGGCGGAGGAGTGGACAGCCATGAGCGAAAAAGAACAACAAGAGATACTCATGAATTACCGTCTGGCTTATTTGGGCGACACGATGGTCAATTGGTGTCCGGCCCTCGGTACCGTATTAGCTAACGATGAAGTCAAGGACGGAGTGAGCGAACGTGGAGGACACCCCGTGGAGCAAAAGAAGATGCGCCAATGGTGCCTGCGCGTATCGGCCTATGCCGAGCGTTTGCTGCACGACCTTGAAACACTGGATTGGACTGAATCGTTGAAAGAGACACAGCGCAACTGGATCGGACGATCCGAAGGAGCCGAAATGGAGTTTCGTCTGGCCGGTAAGGATTGCACATTTACGATTTTTACTACCAGAGCCGACACGATATTCGGTGTCACGTTTATGGTATTGGCTCCTGAGAGCGAATTGGTTGAAGAGGTAACGACAGAGGAGCAGCGCGCTGCAGTGGAGACTTATCTGACAGAAACAAAGCGACGGACAGAACGTGAACGAATATCCGACAAACGAGTCTCAGGAGTTTTCTCCGGCAGTTATGCCATCAATCCTCTCACCGGTAAGGAAATTCCTATTTGGATCAGCGACTACGTATTGGCAGGATATGGCACAGGTGCTATTATGGCTGTGCCGGCTCATGATACGCGCGACTTTGCCTTTGCACGTCATTTCGATCTTCCCATCGTCCAAGTCGTCGTACCCGAGGGCGAACCGGCTACCGATCCTGCCACATGGGAGGATGCCAAAGACAGTAAGAGCGGTATAATGGTCAATTCCGATTTTCTGAATGGTCTCTCCGTAGAAGATGCCATAGCCCAAACCAAGGAGTATATCAGAGAAAAACACTTAGGTTGCGTGAAAGTAAACTACCGCCTGCGCGATGCTATTTTCAGTCGTCAGCGTTATTGGGGGGAACCTTTCCCCATCTACTACAAGGAGGGTATGCCTCACGCGCTGGATGAAGATCGACTGCCGCTCCGATTGCCGGAGGTAGATAAATTCCTCCCCACAGAAAGCGGTGAACCGCCCCTTGGAAGAGCTACCGGCTGGCATACAGCCGAAGGTTATCCATACGAATTGAGCACAATGCCCGGATTTGCCGGTAGCAGTGCTTACTATCTGCGATATATGGATCCACAAAACGATACTGCACTCGTCAGCCGATCGGCGAATGAATATTGGCGTCACGTCGATCTATACATCGGTGGTACGGAGCACGCCACAGGACACCTGATTTATAGCCGCTTTTGGAACAAATTTCTCTTCGACCTTGGTATCGTATGCGAAGCCGAACCTTTCCGCAAGCTGGTGAATCAGGGAATGATCCAAGGACGCTCCAACTTCGTCTATCGAATCAAGAATACCAATACATTCGTCAGCTATGGACTGCGCGAGCAATATGAGGTGACTCCACTCCATGTAGATGTCAATATCGTATCGAACGATCAGCTCGACATAGACCGCTTCCGTGCATGGCGTCCGGAGTACACTTCTGCAGAGTTCATCCTTGAAGATGGCAAGTATATCTGTGGATGGGCTATTGAGAAGATGAGCAAATCGATGTTTAACGTCGTCAATCCCGATGATATTATTGCTCGTTATGGAGCCGATACCCTGCGACTCTACGAAATGTTCCTCGGGCCGCTGGAGCAGAGCAAGCCTTGGGATACGAATGGTATCGATGGTGTACACCGCTTTTTGAAAAAGTTCTGGGCGTTGTACTACAATACAGATGGTATACGCGTCACCGATACAGCACCGACAAAAGAGGAGCTGAAGAGCTTGCACAAGCTCATCAAAAAGGTAGGACAGGATATTGAATCTTTTTCTTTCAACACTTCAATACCCGCCTTCATGATTTGTGTGAATGAGCTGACAGCGGCCAAAACCACTTCTCGTGCCATACTATGTCCATTGCTGACAGTGCTCTCTCCTTTTGCACCGCATATCACCGAGTGGCTATGGCAGGAACTGGGAGTAGAAGGCAGTATCGTAACTGCAACTTGGCCCGAATACAATGAAGAGTATCTGGTGGAGAGCTGTGTACGCTATCCGGTGAGCTTCAATGGCAAGGTTCGTTTCAATATCGAACTGCCGGCCGATATGAGCAAAGAAGATGTAGAGCAAGCAGCCCTTATTGCTCCCGAAGCAGCCCGTTGGCTCGAAGGCAAGAGTCCGAAAAAAGTCATTGTAGTCCCCGGGAGGATCGTCAATGTAGTTGTA","5.20","-24.10","106103","MEYNFQEIEKRVQGQWRKDKVYRVAEDTSKKPFYVLDMFPYPSGAGLHVGHPLGYIASDIFSRYKRLRGFNVLHPMGYDAFGLPAEQYAIQTGQHPEKTTEENTARYREQLDKIGFSYDWEREIRTCDPNYYKWTQWAFLKMFDSYYCNQAQQARPISELIEVFARQGNDGLNVACGEGVRFTAEEWTAMSEKEQQEILMNYRLAYLGDTMVNWCPALGTVLANDEVKDGVSERGGHPVEQKKMRQWCLRVSAYAERLLHDLETLDWTESLKETQRNWIGRSEGAEMEFRLAGKDCTFTIFTTRADTIFGVTFMVLAPESELVEEVTTEEQRAAVETYLTETKRRTERERISDKRVSGVFSGSYAINPLTGKEIPIWISDYVLAGYGTGAIMAVPAHDTRDFAFARHFDLPIVQVVVPEGEPATDPATWEDAKDSKSGIMVNSDFLNGLSVEDAIAQTKEYIREKHLGCVKVNYRLRDAIFSRQRYWGEPFPIYYKEGMPHALDEDRLPLRLPEVDKFLPTESGEPPLGRATGWHTAEGYPYELSTMPGFAGSSAYYLRYMDPQNDTALVSRSANEYWRHVDLYIGGTEHATGHLIYSRFWNKFLFDLGIVCEAEPFRKLVNQGMIQGRSNFVYRIKNTNTFVSYGLREQYEVTPLHVDVNIVSNDQLDIDRFRAWRPEYTSAEFILEDGKYICGWAIEKMSKSMFNVVNPDDIIARYGADTLRLYEMFLGPLEQSKPWDTNGIDGVHRFLKKFWALYYNTDGIRVTDTAPTKEELKSLHKLIKKVGQDIESFSFNTSIPAFMICVNELTAAKTTSRAILCPLLTVLSPFAPHITEWLWQELGVEGSIVTATWPEYNEEYLVESCVRYPVSFNGKVRFNIELPADMSKEDVEQAALIAPEAARWLEGKSPKKVIVVPGRIVNVVV","852586 849767","TIGR ID: PG0796","leucyl-tRNA synthetase","Cytoplasm","This sequence is orthologous to CT209 and BT3126.Numerous significant hits in gapped BLAST to leucyl-tRNA synthetases; e.g. residues 1-925 are 43% similar to AE006315 of Lactococcus lactis, residues 7-924 are 43% similar to AL136518 of Streptomyces coelicolor, residues 3-925 are 41% similar to AE006486 of Streptococcus pyogenes.","
InterPro
IPR001412
Family
Aminoacyl-tRNA synthetase, class I
PS00178\"[42-52]TAA_TRNA_LIGASE_I
InterPro
IPR002300
Domain
Aminoacyl-tRNA synthetase, class Ia
PF00133\"[700-726]TtRNA-synt_1
InterPro
IPR002302
Family
Leucyl-tRNA synthetase bacterial/mitochondrial, class Ia
PR00985\"[126-143]T\"[241-254]T\"[270-289]T\"[542-560]T\"[581-603]T\"[614-624]TTRNASYNTHLEU
PTHR11946:SF7\"[3-139]T\"[203-261]T\"[289-624]T\"[698-925]TLeu_tRNAsyn_1a
TIGR00396\"[3-925]TleuS_bact
InterPro
IPR009008
Domain
ValRS-IleRS-LeuRS editing
SSF50677\"[281-474]TValRS_IleRS_edit
InterPro
IPR009080
Domain
Aminoacyl-tRNA synthetase, class 1a, anticodon-binding
SSF47323\"[741-925]TtRNAsyn_1a_bind
InterPro
IPR013155
Domain
tRNA synthetase, valyl/leucyl, anticodon-binding
PF08264\"[811-863]TAnticodon_1
InterPro
IPR014729
Domain
Rossmann-like alpha/beta/alpha sandwich fold
G3DSA:3.40.50.620\"[29-633]TRossmann-like_a/b/a_fold
InterPro
IPR015413
Domain
tRNA synthetase class I (M)
PF09334\"[40-119]TtRNA-synt_1g
noIPR
unintegrated
unintegrated
G3DSA:1.10.730.10\"[718-861]TG3DSA:1.10.730.10
PTHR11946\"[3-139]T\"[203-261]T\"[289-624]T\"[698-925]TPTHR11946
SSF52374\"[1-749]TSSF52374


","BeTs to 13 clades of COG0495COG name: Leucyl-tRNA synthetaseFunctional Class: JThe phylogenetic pattern of COG0495 is amtkYQvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** PR00985 (Leucyl-tRNA synthetase signature) with a combined E-value of 1.1e-67. PR00985A 126-143 PR00985B 209-225 PR00985C 241-254 PR00985D 270-289 PR00985E 542-560 PR00985F 581-603 PR00985G 614-624","Residues 700-803 are 53% similar to a (SYNTHETASE AMINOACYL-TRNA PROTEIN LIGASE BIOSYNTHESIS) protein domain (PD000476) which is seen in O51267_BORBU.Residues 476-620 are 53% similar to a (SYNTHETASE LEUCYL-TRNA AMINOACYL-TRNA) protein domain (PD004139) which is seen in O51267_BORBU.Residues 204-279 are 69% similar to a (SYNTHETASE AMINOACYL-TRNA LIGASE PROTEIN BIOSYNTHESIS) protein domain (PD000647) which is seen in SYL_BACSU.Residues 111-203 are 32% similar to a (LEUCYL-TRNA SYNTHETASE LEUCINE--TRNA) protein domain (PD038610) which is seen in SYL_MYCTU.Residues 280-318 are 61% similar to a (SYNTHETASE AMINOACYL-TRNA LEUCYL-TRNA) protein domain (PD004663) which is seen in SYL_BACSU.Residues 828-912 are 43% similar to a (SYNTHETASE LEUCYL-TRNA AMINOACYL-TRNA) protein domain (PD118334) which is seen in SYL_BACSU.Residues 16-110 are 64% similar to a (SYNTHETASE AMINOACYL-TRNA LIGASE PROTEIN BIOSYNTHESIS) protein domain (PD000389) which is seen in O84211_CHLTR.Residues 354-475 are 50% similar to a (SYNTHETASE AMINOACYL-TRNA PROTEIN LIGASE BIOSYNTHESIS) protein domain (PD000939) which is seen in SYL_BACSU.","","Thu Jun 14 13:37:32 MDT 2001","","Thu Jun 14 13:37:32 MDT 2001","Thu Jun 14 13:37:32 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:37:32 MDT 2001","Thu Jun 14 13:37:32 MDT 2001","","Wed Jun 6 16:22:39 MDT 2001","Wed Jun 6 16:22:39 MDT 2001","Fri Dec 19 10:57:09 2003","Wed Mar 14 16:52:58 MST 2001","Mon Jun 18 08:11:17 MDT 2001","Mon Jun 18 08:11:17 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG0717 shows weak similarity to three other tRNA synthetases:PG1013 valyl-tRNA synthetase,PG0156 methionyl-tRNA synthetase andPG1395 isoleucyl-tRNA synthetase.","Tue Apr 3 15:19:45 MDT 2001","Wed Jul 30 12:49:29 2008","-51% similar to PDB:1H3N LEUCYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH A SULPHAMOYL ANALOGUE OF LEUCYL-ADENYLATE (E_value = 4.7E_118);-51% similar to PDB:1OBC LEUCYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH A POST-TRANSFER EDITING SUBSTRATE ANALOGUE (E_value = 4.7E_118);-51% similar to PDB:1OBH LEUCYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH A PRE-TRANSFER EDITING SUBSTRATE ANALOGUE IN BOTH SYNTHETIC ACTIVE SITE AND EDITING SITE (E_value = 4.7E_118);-51% similar to PDB:2BTE THERMUS THERMOPHILUS LEUCYL-TRNA SYNTHETASE COMPLEXED WITH WITH A TRNALEU TRANSCRIPT IN THE POST-EDITING CONFORMATION AND A POST-TRANSFER EDITING SUBSTRATE ANALOGUE (E_value = 4.7E_118);-51% similar to PDB:2BYT THERMUS THERMOPHILUS LEUCYL-TRNA SYNTHETASE COMPLEXED WITH A TRNALEU TRANSCRIPT IN THE POST-EDITING CONFORMATION (E_value = 4.7E_118);","","","Residues 11 to 740 (E-value = 1e-83) place PG0717 in the tRNA-synt_1 family which is described as tRNA synthetases class I (I, L, M and V) (PF00133)","Mon Jun 18 08:11:17 MDT 2001","34540579","","","","","","1","","","PG0796" "PG0718","852986","853885","900","ATGAAGACAAATATAGTTGATGTTTTTTGCATCATAGATGATTTCTCCAAGCTTTTTGATGAAACAATCAAGAAAAAGACCCTCGAAGAGGCAGACAAAAAACGCAGGAATAGAAAGTTTAAGATGTCGGACAGTGAGGTCATGACCATCCTGATCCTGTTTCATCTGTCAAGATACCGAGATTTGAAAGCTTTTTATCTTCAATACATCACCCATTCTTGTCGATCCGAGTTTCCACATCTTGTCTCTTATAATCGCTTTGTGGAGCTGCAAAGCAGGGTAGGTTTCAAGCTGATAGCATTTCTCAATATGTGTTGTTTGGGTCAATGTACAGGCATCTCTTTCATCGATTCCACCCCACTGAAGGCTTGTCATATCAAACGAGCTCATGGGCATAGGACAATGAGGGGATGGGCTCAAAAAGGCAAAAGCACCATGGGTTGGTTTTATGGATTCAAGCTACATATTGTTATCAACGACAGGGGTGAAATCATCAACTATCAAATCACACCGGGCAATTGTGATGACAGAGAACCTCTGAAAGACGGAACATTCACCAAGAATCTTTTTGGCAAACTCATTGCCGATAGAGGCTACATTTCCCAAAACCTTTTTGACCGGCTCTTTGTCGATGACATCCACATGATAACCAAAATCAAAAAGAACATGAAGAACTCCCTGATGCATCTATATGACAAAGTTTTATTGAGAAAGAGAGCCCTGATCGAAACGGTCAATGATATGCTCAAAAATGTCTGTCAGATAGAGCACACGAGACATCGCAGTGCCAACAATTTTGTCACCAACCTGATCTCCGGTATCATCGCTTACAACATCCTGCCTAAAAAGCCTGAACTCAATATTGAAATCATCAGAAACCCTAACTTTCCTATTTCCGCT","10.30","20.26","35035","MKTNIVDVFCIIDDFSKLFDETIKKKTLEEADKKRRNRKFKMSDSEVMTILILFHLSRYRDLKAFYLQYITHSCRSEFPHLVSYNRFVELQSRVGFKLIAFLNMCCLGQCTGISFIDSTPLKACHIKRAHGHRTMRGWAQKGKSTMGWFYGFKLHIVINDRGEIINYQITPGNCDDREPLKDGTFTKNLFGKLIADRGYISQNLFDRLFVDDIHMITKIKKNMKNSLMHLYDKVLLRKRALIETVNDMLKNVCQIEHTRHRSANNFVTNLISGIIAYNILPKKPELNIEIIRNPNFPISA","852986 853885","TIGR ID: PG0798","ISPg3 (IS195) transposase","Cytoplasm","PG0718 is essentially identical to the P.gingivalis putative protease gb|AAC26596 previously sequenced in GenBank. Gapped BLAST shows numerous significant hits to transposases, including 52% similarity to a repeated transposase in Pasteurella multocida (emb|CAA75664, emb|CAA75661), 47% similarity to gb|AAG16999 in Piscirickettsia salmonis, and 27% simiarity to gb|AAF61311 in Clostridium cellulovorans.","
InterPro
IPR002559
Domain
Transposase, IS4-like
PF01609\"[113-279]TTransposase_11
noIPR
unintegrated
unintegrated
SSF50249\"[235-300]TNucleic_acid_OB


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 212-286 are 98% similar to a (PROTEASE PUTATIVE TRANSPOSASE PLASMID) protein domain (PD190030) which is seen in O87010_PORGI.Residues 135-208 are identical to a (TRANSPOSASE PLASMID PROTEIN ELEMENT) protein domain (PD004652) which is seen in O87010_PORGI.Residues 75-133 are identical to a (PROTEASE PUTATIVE TRANSPOSASE PLASMID) protein domain (PD190029) which is seen in O87010_PORGI.Residues 1-74 are identical to a (PUTATIVE PROTEASE PROTEASE) protein domain (PD203593) which is seen in O87010_PORGI.Residues 116-280 are 30% similar to a (HYPOTHETICAL 20.1 KD PROTEIN) protein domain (PD207068) which is seen in Q06444_BACST.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Feb 8 15:11:22 MST 2001","Thu Jan 4 12:27:21 2001","Thu Jan 4 12:24:58 2001","","Fri Feb 16 16:25:38 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG0718 is identical to PG0919, PG0236, PG0178 and PG1115, predicted ISPg3 transposases. PG0718 is similar to fragments of PG1663, PG1328, PG1660, PG0273. ","Fri Feb 16 16:25:38 MST 2001","Fri Feb 16 16:25:38 MST 2001","-53% similar to PDB:1C04 IDENTIFICATION OF KNOWN PROTEIN AND RNA STRUCTURES IN A 5 A MAP OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI (E_value = );-53% similar to PDB:1GIY CRYSTAL STRUCTURE OF THE RIBOSOME AT 5.5 A RESOLUTION. THIS FILE, 1GIY, CONTAINS THE 50S RIBOSOME SUBUNIT. THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES ARE IN THE FILE 1GIX (E_value = );-53% similar to PDB:1ML5 Structure of the E. coli ribosomal termination complex with release factor 2 (E_value = );-53% similar to PDB:1RL2 RIBOSOMAL PROTEIN L2 RNA-BINDING DOMAIN FROM BACILLUS STEAROTHERMOPHILUS (E_value = );-53% similar to PDB:1YL3 Crystal structure of 70S ribosome with thrS operator and tRNAs. Large subunit. The coordinates for the small subunit are in the pdb entry 1YL4. (E_value = );","","","Residues 113 to 279 (E-value = 1.6e-35) place PG0718 in the Transposase_11 family which is described as Transposase DDE domain (PF01609)","","34540580","","Lewis JP, Macrina FL, IS195, an insertion sequence-like element associated with protease genes in Porphyromonas gingivalis, Infect Immun 1998 Jul;66(7):3035-42, PubMed: 9632563.","Kehrenberg C, Werckenthin C, Schwarz S, Tn5706, a transposon-like element from Pasteurella multocida mediating tetracycline resistance, Antimicrob Agents Chemother 1998 Aug;42(8):2116-8, PubMed: 9687418.","Thu Jan 4 12:24:58 2001","Thu Jan 4 12:24:58 2001","1","","","PG0798" "PG0719","856369","854813","1557","ATGCCACAGCGTATAGACCTGCGAGTGCGCCCCGAAGAGGCTACTGACGAACAAATACTGCGCAAACATGTAGCGAGACAGACAAAAACAGATCCGACCGACATACATACTATAATAATCAGACGTCGCAGTATTGACGCTCGACAACGACAAGTATACGTCAATTTGGGTCTGGAAGTCTATAGTGGTTCGGAATCTCCGGTCGAAGATGATTTTTCAGATTTGATCTATCCTTCAGTAGAAGGGAAAACCGCTGTCATTGTAGTAGGAGCAGGTCCGGCAGGTCTTTTCGCAGCACTCCGGCTCATCGAGCTTGGTCTGAGGCCTATTATTCTGGAGCGAGGTAAGTCCGTACACGAAAGAAGAGCAGACATCGCTCGCATTCCCAAAGAGGGGCACGTAGACCCCGAATCCAATTACGGATTTGGCGAAGGCGGTGCCGGAGCTTTTTCTGACGGTAAATTATACACACGTAGTAAGAAGCGCGGAGATATAACCAAAATACTACGTATTCTCTGCAAACACGGAGCACAGCCTTCTATCCTGATCGATGCGCATCCACATATCGGCACCGATCGGCTACCCAAAGTGATAGAAAACATTCGGCACCAAATATTGGCAGCCGGAGGAGAAGTTCACTTCAGTTGCCGAATGGAAAGCCTGATCATACATAACGGTCAAGTCGTGGGAGCAAGAGACAACAAGGGGCGTGAATACTGCGGTCCTGTTATCCTGGCAACGGGACATTCCGCACGCGACATCTATCGCTATCTTCACCGAAACGGCATTCGAATGGAAGCAAAAGGAACAGCTGTCGGTGTCCGGCTGGAGCATCCGCAAGCTCTGATCGACCAACTGCGCTACCACAACCCCAAGGGGCGCGGACTCTACCTGCCACCGGCAGAATATACCTATACGGCTCAGGTGGAGGGACGCGGTGTCTATAGCTTCTGCATGTGTCCGGGGGGCTTCGTCGTACCGGCATCCACTGCACCGGATCAGACAGTCGTGAATGGCATGTCACCGGCCAACAGAGGTTCCCGATGGGCAAACTCCGGCTTAGTGGTAGAGATTCATCCTGAAGACGTGCTTTCCACTCCTACGAATGACCCCTTGGCTCTTATGAATTGGATAGAACGCTTGGAAGGCGAGAGTTGGACACAGGCAAGATGCAGCCTGCGAGCACCGGCTCAACGAATGACGGATTTCCTATCAGGCCGAAGTTCTGTCGATCTACCCAAATCATCCTACAACATGGGACTCACACCCTCACGTTTGGACGAATGGCTTCCTTCCTTTATTACAAAGAGGATACAGAAAGCTTTCCAACTCTTCGACAGACAGACGAAAGGATTCCTCACTGCAGAAGCCCAGCTGATAGCATTGGAGAGCCGCACATCTTCTCCCGTACGTATCCTGCGCGAATCAACCTCTTGCGAACACCCTCTGCTCCGAGGACTTTTTCCCTGTGGAGAAGGAGCAGGCTATGCAGGCGGCATCGTCTCGGCAGCAATGGACGGAGAGCGTTGTGCCGAAGGCGTTGCCTCCTATCTGGGA","8.50","9.46","57134","MPQRIDLRVRPEEATDEQILRKHVARQTKTDPTDIHTIIIRRRSIDARQRQVYVNLGLEVYSGSESPVEDDFSDLIYPSVEGKTAVIVVGAGPAGLFAALRLIELGLRPIILERGKSVHERRADIARIPKEGHVDPESNYGFGEGGAGAFSDGKLYTRSKKRGDITKILRILCKHGAQPSILIDAHPHIGTDRLPKVIENIRHQILAAGGEVHFSCRMESLIIHNGQVVGARDNKGREYCGPVILATGHSARDIYRYLHRNGIRMEAKGTAVGVRLEHPQALIDQLRYHNPKGRGLYLPPAEYTYTAQVEGRGVYSFCMCPGGFVVPASTAPDQTVVNGMSPANRGSRWANSGLVVEIHPEDVLSTPTNDPLALMNWIERLEGESWTQARCSLRAPAQRMTDFLSGRSSVDLPKSSYNMGLTPSRLDEWLPSFITKRIQKAFQLFDRQTKGFLTAEAQLIALESRTSSPVRILRESTSCEHPLLRGLFPCGEGAGYAGGIVSAAMDGERCAEGVASYLG","856369 854813","TIGR ID: PG0800","probable NAD(FAD)-dependent dehydrogenase","Cytoplasm","Significant hits using gapped BLAST include 40% similarity to a two putative proteins in Arabidopsis thaliana (emb|CAB79790, emb|CAB52445), 38% similarity to gb|AAF93970 in Vibrio cholerae and 39% similarity to dbj|BAA10054 in Synechocystis sp.This sequence is similar to BT2407.","
InterPro
IPR000759
Family
Adrenodoxin reductase
PR00419\"[85-107]T\"[242-256]TADXRDTASE
InterPro
IPR001100
Family
Pyridine nucleotide-disulphide oxidoreductase, class I
PR00411\"[85-107]T\"[243-252]TPNDRDTASEI
InterPro
IPR002938
Domain
Monooxygenase, FAD-binding
PF01494\"[83-114]TFAD_binding_3
InterPro
IPR013027
Domain
FAD-dependent pyridine nucleotide-disulphide oxidoreductase
PR00368\"[85-107]T\"[243-252]TFADPNR
noIPR
unintegrated
unintegrated
G3DSA:3.50.50.60\"[60-289]TG3DSA:3.50.50.60
PTHR11632\"[74-114]TPTHR11632
SSF51905\"[86-518]TSSF51905


","BeTs to 3 clades of COG0446COG name: Uncharacterized NAD(FAD)-dependent dehydrogenasesFunctional Class: RThe phylogenetic pattern of COG0446 is AmtKyQVCE-R---gpol---Number of proteins in this genome belonging to this COG is 2","***** IPB000103 (Pyridine nucleotide-disulphide oxidoreductase class-II) with a combined E-value of 2.1e-07. IPB000103A 85-109 IPB000103E 482-518***** IPB000171 (Bacterial-type phytoene dehydrogenase) with a combined E-value of 1.4e-06. IPB000171A 87-117","Residues 16-158 are 37% similar to a (ORF1) protein domain (PD126691) which is seen in Q55555_SYNY3.Residues 174-514 are 41% similar to a (PROTEIN CONSERVED 484AA LONG ORF1) protein domain (PD023959) which is seen in Q55555_SYNY3.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Dec 17 10:21:59 2003","Wed Dec 17 10:21:59 2003","Thu Jan 4 12:39:49 2001","Wed Dec 17 10:21:59 2003","Wed Dec 17 10:21:59 2003","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Dec 17 10:21:59 2003","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540582","","","","","","1","","","PG0800" "PG0720","857805","856357","1449","ATGACAGACAAAGAGTTAATTCTTAGTAAAATCGACATCCCGATATTCCGTCTTATCGCAGAAGTGGCAGATCAGTTGGGACTGGAAACCTATGTCGTGGGTGGATATGTGCGAGATATATTCTTGAATCGTCCTTCCAAAGATATCGATATAGTAGCCGTAGGGCGCGGTATCGACCTGGCGAAAGCTGTAGCCAAGAAGCTGGGACGGAAGGCTCACCTATCCGTTTTCGCCAATTTCGGTACCGCTCAAGTAAAGCATGGTGATCTGGAGATAGAATTTGTGGGTGCCCGTAAGGAAAGTTACCGACACGATAGTCGTAAGCCGATAGTCGAAGATGGTACGCTGGAAGATGATTTGCGTCGTCGCGACTTCACCATCAACGCCCTTGCCGTATGCCTCAATAGCGATCGTTTCGGTGATCTGGTAGATATGTTCGATGGCTTGTGCGACATGGATGACATGCTCCTCTGCACACCCCTTGATCCGGATATTACTTTCAGTGACGACCCTCTTCGAATGATGCGTGCCATCCGCTTTGCATCCCAACTACCGGGCTTTACTATCCTGCCACGCGACTTCGAGGCCATACAGCGGAATGCTCACCGGATTAAAGAAGCCGTATCGGCCGAACGGGTAATAGAAGAACTGAATAAAATCATGCTCTCACCTCGTCCCTCTATCGGTCTTTCTCTGTTCGAAGAGACGGGGCTGATGGAATATGTTTTTCCCGAACTCTTAGCCCTCAAAGGAGCAGAAACGCGTGATGGCATCGGGCATAAGGACAATCTCACTCATACTTATAAGGTAGTGGACAACTTGGCTCGGCACAGCGATAGTCTTTGGCTCAGGTGGGCAGCATTGCTACACGACATAGGCAAACCACGCACTAAAAAGTTTGTTGGCGGACAGTGGACATTTCATAATCACAACTTTGTCGGAGCCAAGATGCTACCCTCTCTCTTCAAACGACTCCGACTTCCGCTGGATGCCAAACTCAAATACGTACAAAAACTCGTAGATCTGCACATGCGTCCGGCAGCTCTGGTGGACGAAGGAGTTACGGATTCTGCCGTTCGCCGTCTGCTCTTCGAAGCCGGTGATGATATAGATGATCTGATGATGCTATGCGAAGCTGACATTACAAGCAAGAATCCCGACAAGGTGCGCAAGTATATAGACAACTATGCTTTGGTACGTCATAAGTTTAAAGAAATAGAGGAGAAAGACCACGTTCGCAACTTCCAACCACCGATCTCCGGCGAAGAGATTATGCAGACCTTCGGTCTAAAACCATCGCGCCACGTTGGCACCATCAAGGAGGCGATCAAAGAGGCCATACTCGACGGGGCTATCCCCAATGACTACGAAGCTGCCCGAGTTTTCATGATCGAAGCAGCTGCTTCACTCGGTCTTCACCCCAAAAACCAAACATCATGCCACAGCGTA","6.60","-3.34","54529","MTDKELILSKIDIPIFRLIAEVADQLGLETYVVGGYVRDIFLNRPSKDIDIVAVGRGIDLAKAVAKKLGRKAHLSVFANFGTAQVKHGDLEIEFVGARKESYRHDSRKPIVEDGTLEDDLRRRDFTINALAVCLNSDRFGDLVDMFDGLCDMDDMLLCTPLDPDITFSDDPLRMMRAIRFASQLPGFTILPRDFEAIQRNAHRIKEAVSAERVIEELNKIMLSPRPSIGLSLFEETGLMEYVFPELLALKGAETRDGIGHKDNLTHTYKVVDNLARHSDSLWLRWAALLHDIGKPRTKKFVGGQWTFHNHNFVGAKMLPSLFKRLRLPLDAKLKYVQKLVDLHMRPAALVDEGVTDSAVRRLLFEAGDDIDDLMMLCEADITSKNPDKVRKYIDNYALVRHKFKEIEEKDHVRNFQPPISGEEIMQTFGLKPSRHVGTIKEAIKEAILDGAIPNDYEAARVFMIEAAASLGLHPKNQTSCHSV","857805 856357","The Pfam hit is to the RNA polymerase family which includes both poly(A) polymerase which adds the poly A tail to mRNA, with EC 2.7.7.19 and tRNA nucleotidyltransferase that adds the CCA to the 3' of the tRNA, with EC 2.7.7.25.TIGR ID: PG0801","poly(A) polymerase/tRNA nucleotidyltransferase","Cytoplasm","Numerous significant hits using gapped BLAST including 56% similarity to a polyA polymerase in Prevotella ruminicola (dbj|BAA74513), 37% similarity to emb|CAB42723 in Streptomyces coelicolor and 33% similarity to a probable polynucleotide polymerase in Mycobacterium tuberculosis (emb|CAB08094).This sequence is similar to BT1975.","
InterPro
IPR002646
Domain
Polynucleotide adenylyltransferase region
PF01743\"[30-158]TPolyA_pol
InterPro
IPR003607
Domain
Metal-dependent phosphohydrolase, HD region
SM00471\"[259-382]THDc
InterPro
IPR006674
Domain
Metal-dependent phosphohydrolase, HD region, subdomain
PF01966\"[263-385]THD
InterPro
IPR006675
Domain
HDIG
TIGR00277\"[253-337]THDIG
noIPR
unintegrated
unintegrated
G3DSA:1.10.3090.10\"[162-297]TG3DSA:1.10.3090.10
G3DSA:3.30.460.10\"[14-155]TG3DSA:3.30.460.10
PTHR13734\"[45-476]TPTHR13734
PTHR13734:SF7\"[45-476]TPTHR13734:SF7
SSF81301\"[18-155]TSSF81301
SSF81891\"[156-458]TSSF81891


","BeTs to 12 clades of COG0617COG name: tRNA nucleotidyltransferase/poly(A) polymeraseFunctional Class: JThe phylogenetic pattern of COG0617 is ----yQvCEbrHuj--oLINxNumber of proteins in this genome belonging to this COG is 1","***** PF01743 (Poly A polymerase family) with a combined E-value of 1.4e-28. PF01743A 31-46 PF01743B 115-130 PF01743C 167-183***** PF01966 (HD domain) with a combined E-value of 9e-06. PF01966 285-294","Residues 197-361 are 57% similar to a (POLYMERASE NUCLEOTIDYLTRANSFERASE) protein domain (PD011178) which is seen in Q9ZN65_PRERU.Residues 362-472 are 44% similar to a (POLYA POLYMERASE) protein domain (PD209745) which is seen in Q9ZN65_PRERU.Residues 19-184 are 64% similar to a (POLYMERASE TRANSFERASE POLYA) protein domain (PD003898) which is seen in Q9ZN65_PRERU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Tue Dec 9 16:56:45 2003","Thu Jan 4 12:54:43 2001","Tue Dec 9 16:56:45 2003","Thu Jan 4 12:54:43 2001","Thu Apr 19 16:38:44 MDT 2001","Thu Apr 19 16:38:44 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Apr 19 16:38:44 MDT 2001","-50% similar to PDB:1VFG Crystal structure of tRNA nucleotidyltransferase complexed with a primer tRNA and an incoming ATP analog (E_value = 1.5E_29);-41% similar to PDB:1MIV Crystal structure of Bacillus stearothermophilus CCA-adding enzyme (E_value = 8.1E_23);-41% similar to PDB:1MIW Crystal structure of Bacillus stearothermophilus CCA-adding enzyme in complex with ATP (E_value = 8.1E_23);-41% similar to PDB:1MIY Crystal structure of Bacillus stearothermophilus CCA-adding enzyme in complex with CTP (E_value = 8.1E_23);","","","Residues 82 to 252 (E-value = 1.3e-43) place PG0720 in the PolyA_pol family which is described as Poly A polymerase family (PF01743)Residues 263 to 385 (E-value = 1.9e-07) place PG0720 in the HD family which is described as HD domain (PF01966)","Tue Dec 9 16:56:45 2003","34540583","","","","","","1","","","PG0801" "PG0721","859813","858467","1347","ATGCGCTACGACTTAGCTATCATCGGTGGAGGGCCGGCCGGTTATACGGCTGCCGAACGTGCTGCCAAAGGTGGCCTGAAAACCCTCCTAATTGAGAAGAATGCTCTCGGTGGTGTATGCCTCAACGAAGGATGTATACCGACCAAGACGCTACTCTACTCGGCCAAAGTGCTACATCAAATTGCTACGGCATCTAAATATGCAGTAAGTGGAACGGCCGATGGACTTGACCTCGGCAAGGTGATTGCCAGAAAAGGTAAAATCATTCGCAAGCTGACTGCAGGCATCCGTTCACGCCTGACAGAGGCCGGAGTAGAGATGGTGACGGCAGAAGCTACCGTAACGGGATGCGATGCAGACGGCATCATCGGCATTACTGCGGGCGAAGCACAGTACAAAGCTGCCAACCTGCTACTATGTACCGGTTCGGAGACGTTTATTCCACCCATCCCCGGAGTGGAGCAGACAGAGTATTGGACAAACCGTGAAGCTCTACAGAACAAAGAGATTCCGACCTCTCTCGTCATCATCGGTGGTGGAGTGATCGGAATGGAGTTCGCTTCTTTCTTCAACGGTATCGGTACGCAAGTGCACGTGGTGGAGATGCTGCCGGAAATACTCAACGGTATCGATCCCGAACATGCAGCTATGCTACGCGCTCACTATGAAAAAGAAGGAATCAAATTCTACCTCGGGCACAAAGTAACATCGGTTCGCAACGGAGCTGTTACGGTAGAATACGAAGGAGAAAGCAAAGAGATCGAAGGAGAACGTATCCTGATGAGTGTGGGACGTCGCCCCGTGCTGCAAGGATTCGAGTCGCTCGGATTGGTGCTTGCCGGCAAAGGTGTAAAGACTAATGAGAGGATGCAAACTTCCCTGCCCAATGTCTATGCTGCAGGTGATATTACAGGCTTCTCGCTTTTGGCACATACGGCTGTACGGGAAGCAGAGGTAGCAGTAGATCAGATTTTGGGCAAAACAGACGAAACGATGAGCTACCGTGCCGTACCAGGTGTGGTGTACACCAATCCCGAGGTCGCCGGTGTGGGAGAGACGGAAGAATCGCTTCGCAAAGCAGGACGTGCCTACACTGTTCGTCGCCTTCCTATGGCCTTCTCCGGTCGATTTGTAGCAGAAAACGAACAAGGCAATGGAGAGTGCAAACTACTACTTGATGAAGAGAACCGCTTGATCGGAGCACACCTCATTGGCAATCCGGCCGGCGAACTCATCGTAACCGCTGCCATGGCCATCGAGACCGGCATGACGGATCGACAAATCGAACGAATCATATTCCCTCATCCGACTGTAGGCGAAATCCTAAAAGAAACTCTCGCCGGAGGT","5.60","-7.26","47786","MRYDLAIIGGGPAGYTAAERAAKGGLKTLLIEKNALGGVCLNEGCIPTKTLLYSAKVLHQIATASKYAVSGTADGLDLGKVIARKGKIIRKLTAGIRSRLTEAGVEMVTAEATVTGCDADGIIGITAGEAQYKAANLLLCTGSETFIPPIPGVEQTEYWTNREALQNKEIPTSLVIIGGGVIGMEFASFFNGIGTQVHVVEMLPEILNGIDPEHAAMLRAHYEKEGIKFYLGHKVTSVRNGAVTVEYEGESKEIEGERILMSVGRRPVLQGFESLGLVLAGKGVKTNERMQTSLPNVYAAGDITGFSLLAHTAVREAEVAVDQILGKTDETMSYRAVPGVVYTNPEVAGVGETEESLRKAGRAYTVRRLPMAFSGRFVAENEQGNGECKLLLDEENRLIGAHLIGNPAGELIVTAAMAIETGMTDRQIERIIFPHPTVGEILKETLAGG","pyruvate dehydrogenase E3 component(dihydrolipoamide dehydrogenase)","From Prosite PDOC00073: The pyridine nucleotide-disulphide oxidoreductasesare FAD flavoproteins which contains a pair ofredox-active cysteines involved in the transfer ofreducing equivalents from the FAD cofactor to thesubstrate.TIGR ID: PG0802","pyruvate dehydrogenase E3 component(dihydrolipoamide dehydrogenase)","Cytoplasm","Numerous significant hits using gapped BLAST to dihydrolipoamide dehydrogenases including 36% similarity to AAA21748 in Clostridium magnum, 35% similarity to BAB04498 in Bacillus halodurans and 34% similarity to sp|P75393|DLDH_MYCPN in Mycoplasma pneumoniae.This sequence is similar to BT3186.","
InterPro
IPR000815
Family
Mercuric reductase
PR00945\"[14-32]T\"[138-155]T\"[173-190]THGRDTASE
InterPro
IPR001100
Family
Pyridine nucleotide-disulphide oxidoreductase, class I
PR00411\"[4-26]T\"[36-51]T\"[137-146]T\"[173-198]T\"[257-271]T\"[297-304]T\"[333-354]T\"[398-413]T\"[420-440]TPNDRDTASEI
InterPro
IPR001327
Domain
Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region
PD000139\"[141-213]TFAD_pyr_redox
PF00070\"[173-264]TPyr_redox
InterPro
IPR004099
Domain
Pyridine nucleotide-disulphide oxidoreductase dimerisation region
G3DSA:3.30.390.30\"[330-446]TPyr_redox_dim
PF02852\"[337-446]TPyr_redox_dim
InterPro
IPR006258
Family
Dihydrolipoamide dehydrogenase
TIGR01350\"[2-448]Tlipoamide_DH
InterPro
IPR012999
Active_site
Pyridine nucleotide-disulphide oxidoreductase, class I, active site
PS00076\"[37-47]TPYRIDINE_REDOX_1
InterPro
IPR013027
Domain
FAD-dependent pyridine nucleotide-disulphide oxidoreductase
PR00368\"[4-26]T\"[137-146]T\"[173-198]T\"[257-271]T\"[297-304]TFADPNR
PF07992\"[4-308]TPyr_redox_2
noIPR
unintegrated
unintegrated
G3DSA:3.50.50.60\"[2-48]T\"[127-327]TG3DSA:3.50.50.60
PTHR22912\"[6-445]TPTHR22912
PTHR22912:SF20\"[6-445]TPTHR22912:SF20
SSF51905\"[2-298]TSSF51905
SSF55424\"[334-446]TSSF55424


","BeTs to 11 clades of COG1249COG name: Dihydrolipoamide dehydrogenase/glutathione oxidoreductase and related enzymesFunctional Class: CThe phylogenetic pattern of COG1249 is amt-YqvCEBRH--gp--inXNumber of proteins in this genome belonging to this COG is 1","***** IPB000103 (Pyridine nucleotide-disulphide oxidoreductase class-II) with a combined E-value of 1.1e-15. IPB000103A 4-28 IPB000103E 292-328***** IPB001100 (Pyridine nucleotide-disulphide oxidoreductase, class I) with a combined E-value of 9.7e-07. IPB001100 37-49","Residues 5-444 are 36% similar to a (OXIDOREDUCTASE FLAVOPROTEIN FAD REDUCTASE REDOX-ACTIVE) protein domain (PD000139) which is seen in Q59299_BBBBB.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","Thu Jan 4 13:04:09 2001","Mon Dec 22 10:00:01 2003","Thu Jan 4 13:04:09 2001","Mon Dec 22 10:00:01 2003","Thu Jan 4 13:04:09 2001","Wed Mar 14 13:34:58 MST 2001","Wed Mar 14 13:34:58 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 137-364 are 31% similar to PG0160, NADH oxidase/peroxidase.Residues 3-304 are 22% similar to PG0557, alkyl hydroperoxide reductase.","Tue Apr 3 16:17:49 MDT 2001","Wed Mar 14 13:34:58 MST 2001","-54% similar to PDB:3LAD REFINED CRYSTAL STRUCTURE OF LIPOAMIDE DEHYDROGENASE FROM AZOTOBACTER VINELANDII AT 2.2 ANGSTROMS RESOLUTION. A COMPARISON WITH THE STRUCTURE OF GLUTATHIONE REDUCTASE (E_value = 1.1E_66);-55% similar to PDB:1JEH CRYSTAL STRUCTURE OF YEAST E3, LIPOAMIDE DEHYDROGENASE (E_value = 1.0E_64);-55% similar to PDB:1V59 Crystal structure of yeast lipoamide dehydrogenase complexed with NAD+ (E_value = 1.0E_64);-53% similar to PDB:1ZMC Crystal Structure of Human dihydrolipoamide dehydrogenase complexed to NAD+ (E_value = 1.0E_64);-53% similar to PDB:1ZMD Crystal Structure of Human dihydrolipoamide dehydrogenase complexed to NADH (E_value = 1.0E_64);","","","Residues 4 to 312 (E-value = 1.7e-88) place PG0721 in the Pyr_redox family which is described as Pyridine nucleotide-disulphide oxidoreductase (PF00070)Residues 337 to 446 (E-value = 8.1e-30) place PG0721 in the Pyr_redox_dim family which is described as Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain (PF02852)","Mon Dec 22 10:00:01 2003","34540584","","","Kruger,N., Oppermann,F.B., Lorenzl,H. and Steinbuchel,A. 1994. Biochemical and molecular characterization of the Clostridium magnum acetoin dehydrogenase enzyme system. J. Bacteriol. 176 (12): 3614-3630. PubMed: 8206840.","","Wed Mar 14 13:38:28 MST 2001","1","","","PG0802" "PG0722","860609","859821","789","ATGAGATTAATCATAGAGCCGGATTACGACAAGCTCTCCAAATGGGCAGCCGACTACGTCATCGAGCGTATCCATAAAGCAGCTCCTACGGCCGAAAAACCGTTTGTACTCGGTCTACCGACAGGTTCTTCGCCGATAGGAATGTACAGAGAGTTAGTGAAAGCATGCAAAGAAGGATGCATATCTTTCCGCCACGTAATCACCTTCAACATGGATGAATACGTAGGCCTTGCTATAGAGCATCCGGAGAGCTATCATTCATTCATGCATCGGCATTTGTTCGACCATATCGACATCCTGCCTCAGAACATCCACATTCTCAATGGCAATGCTCCTGACCTGACGGCCGAGTGCGATGCATACGAGAGAGCTATTGAAGCTGCCGGAGGCATAGACCTTTTCATCGGCGGGATAGGACCTGACGGACATATCGCATTCAATGAGCCGGGGTCTTCTCTTACCTCTCGCACCCGTATCAAGACGCTAACTACAGATACCGTACTGGCTAACAGTCGCTTTTTCGACAACGATACGAATCAGGTTCCGAAACGTGCTCTCACCGTAGGAGTAGGAACAATTATGGATGCACGGGAAGTAATGATCCTCGTGAACGGACATACTAAAGCCCGTGCTCTTCGTGAAGCTGTGGAAGGTGCAGTCAGCCAAATGTGGACGATCACAGCCTTGCAGCTCCATCGTCAGAGTATCATTGTCTGTGACGAAGCTGCCTGTGTGGAGCTGAAAGTGGGCACGTACAACTACTTTAAGGATATCGAACGCAACAATCTA","6.10","-5.58","29267","MRLIIEPDYDKLSKWAADYVIERIHKAAPTAEKPFVLGLPTGSSPIGMYRELVKACKEGCISFRHVITFNMDEYVGLAIEHPESYHSFMHRHLFDHIDILPQNIHILNGNAPDLTAECDAYERAIEAAGGIDLFIGGIGPDGHIAFNEPGSSLTSRTRIKTLTTDTVLANSRFFDNDTNQVPKRALTVGVGTIMDAREVMILVNGHTKARALREAVEGAVSQMWTITALQLHRQSIIVCDEAACVELKVGTYNYFKDIERNNL","860609 859821","TIGR ID: PG0803","glucosamine-6-phosphate isomerase (glucosamine-6-phosphate deaminase)","Cytoplasm","Numerous significant hits using gapped BLAST to glucosamine-6-phosphate isomerase: e.g. 66% similarity to gb|AAC66538 in Borrelia burgdorferi, 62% similarity to two proteins, gb|AAC73772, gb|AAA24191 in E.coli. and 60% similarity to gb|AAF96921 in Vibrio cholerae.This sequence is similar to BT4127.","
InterPro
IPR004547
Family
Glucosamine-6-phosphate isomerase
PTHR11280\"[24-262]TNagB
TIGR00502\"[1-259]TnagB
PS01161\"[125-143]TGLC_GALNAC_ISOMERASE
InterPro
IPR006148
Domain
Glucosamine/galactosamine-6-phosphate isomerase
PF01182\"[15-250]TGlucosamine_iso
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.1360\"[1-263]TG3DSA:3.40.50.1360
SSF100950\"[1-262]TSSF100950


","BeTs to 8 clades of COG0363COG name: Glucosamine-6-phosphate deaminase (Glucosamine-6-phosphate isomerase)Functional Class: GThe phylogenetic pattern of COG0363 is ----Y-vcEBrHuj--Olin-Number of proteins in this genome belonging to this COG is 2","***** IPB000457 (Glucosamine/galactosamine-6-phosphate isomerase) with a combined E-value of 3.9e-62. IPB000457A 35-66 IPB000457B 117-158 IPB000457C 189-240","Residues 89-211 are 70% similar to a (ISOMERASE DEAMINASE) protein domain (PD006132) which is seen in NAGB_BORBU.Residues 91-219 are 28% similar to a (PROTEIN OXIDOREDUCTASE DEVB HOMOLOG) protein domain (PD004927) which is seen in DEVB_MYCTU.Residues 1-88 are 62% similar to a (ISOMERASE DEAMINASE) protein domain (PD007348) which is seen in NAGB_BORBU.Residues 212-262 are 60% similar to a (ISOMERASE GLUCOSAMINE-6-PHOSPHATE GLUCOSAMINE-6-) protein domain (PD012839) which is seen in NAGB_BORBU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri May 4 11:03:21 MDT 2001","Mon Jan 5 10:59:31 2004","Tue Jan 7 14:25:01 2003","Tue Apr 3 16:22:10 MDT 2001","Tue Apr 3 16:22:10 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 16-243 are 34% similar to PG1132, a probable glucosamine 6-phosphate isomerase.","Tue Apr 3 16:22:10 MDT 2001","Tue Apr 3 16:22:10 MDT 2001","-78% similar to PDB:1CD5 GLUCOSAMINE-6-PHOSPHATE DEAMINASE FROM E.COLI, T CONFORMER (E_value = 6.8E_94);-78% similar to PDB:1DEA STRUCTURE AND CATALYTIC MECHANISM OF GLUCOSAMINE 6-PHOSPHATE DEAMINASE FROM ESCHERICHIA COLI AT 2.1 ANGSTROMS RESOLUTION (E_value = 6.8E_94);-78% similar to PDB:1FQO GLUCOSAMINE 6-PHOSPHATE DEAMINASE COMPLEXED WITH THE SUBSTRATE OF THE REVERSE REACTION FRUCTOSE 6-PHOSPHATE (OPEN FORM) (E_value = 6.8E_94);-78% similar to PDB:1FRZ GLUCOSAMINE-6-PHOSPHATE DEAMINASE FROM E.COLI, R CONFORMER. COMPLEXED WITH THE ALLOSTERIC ACTIVATOR N-ACETYL-GLUCOSAMINE-6-PHOSPHATE AT 2.2 A RESOLUTION (E_value = 6.8E_94);-78% similar to PDB:1FS5 A DISCOVERY OF THREE ALTERNATE CONFORMATIONS IN THE ACTIVE SITE OF GLUCOSAMINE-6-PHOSPHATE ISOMERASE (E_value = 6.8E_94);","","","Residues 15 to 250 (E-value = 9.5e-157) place PG0722 in the Glucosamine_iso family which is described as Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase (PF01182)","Tue Apr 3 16:22:10 MDT 2001","34540585","","","","","","1","","","PG0803" "PG0723","861856","860651","1206","ATGTATCAAGTTCCTCAAGTAACAGACTCCGTTTACTACGTGGGCGTGAATGACCGCTCGAAAAGTCTCTTCGAGAATATGTGGCCGTTGCCATACGGTGTATCGTACAATTCATATCTCATCGTGGACGAAAAAGTAGCCCTCATCGACACAGTAGATGTTTGCTATTCGGAGATTTTCTTCAAGAAGTTGGATACAGTCCTCAAAGGACGCCCTATCGACTATCTTATCGTCGATCACATGGAGCCGGACCATAGTGGCTCGATAGGCCTGCTGCGCCAACGCTATCCCAATATGCAAATCGTCGGCAACAAGAAGACTCATGGGATGCTCGAAGGCTACCACCACATTACCGAAGGACTTCTAGAGGTAAAAGAAGGCGACAAACTCTCCCTCGGCAAAAATGAGCTTACTTTCATTTTCGCTCCGATGGTACACTGGCCGGAAGTAATGTTCACCTACATGCCAACCCAACAGGTCTTGTTCTCTGCCGATGCTTTCGGTACGTTCGGTACACTCGACGGACATATATTCGACAAGGATATGGATCTCTCTTTCCGCTGGGAGGAGATGTACCGCTACTACGCCTGCATTGTGGGCAAGTACGGCAGCTTTGTACAGAAAGTACTCACCAAGTTCAAGGAAGCCAATCTGCCTGTTCAATATATATGCTCTACGCACGGCCCCGTTTGGACACCGGCACACTTCTCTGAAGCCTTCGACCTCTACGATCGGATGAGCCGCTACGAAGCCGAAGAAGGTGCAGTGATTCTCTACGGCACTATGTACGGCAATACGGAAGTATTGGCAGATACGATCGCACAGGGCATTGCTGCAGGAGGCATCCGCAACGTTGTATGCCACAATGTAGCATTCAGTCCGGCATCTAACATCCTGCGCGACATCTTTAAGTACAAGGCAGTGATAATCGGTAGCCCCACATACAGCAATGAGATCTTTTCACCGATCAAGAATATCATGGAAATGATCCGTCTTCGCGAGGTAAAAGATCGCTATCTGAGCGTGTTCGGCTCCTTTACATGGGCCGGTCAGGCTGTGAAAAAGATAGTTCCTTTTGCAGAAGAAATGGGTTGGGAAATGGTAGGCGAACCTTTGGAACAAAAGATGTCTACCACGGATGAACTGTACGAGAAGGGTTGGGAGCTTGGCAATAAAATAGCCGAACGTCTGAAAGCCGATCGTCAG","5.40","-9.75","45979","MYQVPQVTDSVYYVGVNDRSKSLFENMWPLPYGVSYNSYLIVDEKVALIDTVDVCYSEIFFKKLDTVLKGRPIDYLIVDHMEPDHSGSIGLLRQRYPNMQIVGNKKTHGMLEGYHHITEGLLEVKEGDKLSLGKNELTFIFAPMVHWPEVMFTYMPTQQVLFSADAFGTFGTLDGHIFDKDMDLSFRWEEMYRYYACIVGKYGSFVQKVLTKFKEANLPVQYICSTHGPVWTPAHFSEAFDLYDRMSRYEAEEGAVILYGTMYGNTEVLADTIAQGIAAGGIRNVVCHNVAFSPASNILRDIFKYKAVIIGSPTYSNEIFSPIKNIMEMIRLREVKDRYLSVFGSFTWAGQAVKKIVPFAEEMGWEMVGEPLEQKMSTTDELYEKGWELGNKIAERLKADRQ","861859 860651","TIGR ID: PG0804","probable flavoprotein A","Cytoplasm","Numerous significant hits using gapped BLAST to flavoproteins A including 32% similarity to gb|AAG00802 in Moorella thermoacetica, 33% similarity to gb|AAB89726 in Archaeoglobus fulgidus and 35% similarity to gb|AAC75752 and gb|AAA69220 in E.coli.This sequence is similar to BT4126.","
InterPro
IPR001226
Domain
Flavodoxin, N-terminal
PS00201\"[257-273]TFLAVODOXIN
InterPro
IPR001279
Domain
Beta-lactamase-like
PF00753\"[35-227]TLactamase_B
InterPro
IPR008254
Domain
Flavodoxin/nitric oxide synthase
PF00258\"[257-386]TFlavodoxin_1
PS50902\"[255-394]TFLAVODOXIN_LIKE
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.360\"[254-398]TG3DSA:3.40.50.360
G3DSA:3.60.15.10\"[2-248]TG3DSA:3.60.15.10
PIRSF005243\"[2-399]TROO
SSF52218\"[251-402]TSSF52218
SSF56281\"[2-250]TSSF56281


","BeTs to 8 clades of COG0426COG name: Uncharacterized flavoproteinsFunctional Class: CThe phylogenetic pattern of COG0426 is AMTK-qVCe------------Number of proteins in this genome belonging to this COG is 2","***** IPB001226 (Flavodoxin) with a combined E-value of 2.2e-09. IPB001226A 257-273 IPB001226B 305-315 IPB001226C 318-359","Residues 37-105 are 44% similar to a (PROTEIN HYDROLASE II GLYOXALASE HYDROXYACYLGLUTATHIONE) protein domain (PD000482) which is seen in P72723_SYNY3.Residues 153-231 are 39% similar to a (FLAVOPROTEIN PROTEIN POTENTIAL) protein domain (PD003846) which is seen in Q46709_ECOLI.Residues 37-105 are 40% similar to a (PROTEIN LONG FLAVOPROTEIN SY) protein domain (PD035843) which is seen in Q55393_SYNY3.Residues 256-394 are 30% similar to a (FMN FLAVOPROTEIN OXIDOREDUCTASE REDUCTASE NADP ELECTRON) protein domain (PD000452) which is seen in O28752_ARCFU.","","Thu Jun 14 13:38:39 MDT 2001","","Thu Jun 14 13:38:39 MDT 2001","Thu Jun 14 13:38:39 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:38:39 MDT 2001","Thu Jun 14 13:38:39 MDT 2001","","","Thu Jan 4 17:42:28 2001","Mon Jan 5 10:57:20 2004","Thu Jan 4 17:42:28 2001","Mon Jun 18 08:15:04 MDT 2001","Mon Jun 18 08:15:04 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri May 4 11:05:16 MDT 2001","-54% similar to PDB:1YCF Oxidized (di-ferric) FprA from Moorella thermoacetica (E_value = 4.9E_55);-54% similar to PDB:1YCG X-ray Structures of Moorella thermoacetica FprA. Novel Diiron Site Structure and Mechanistic Insights into a Scavenging Nitric Oxide Reductase (E_value = 4.9E_55);-54% similar to PDB:1YCH X-ray Crystal Structures of Moorella thermoacetica FprA. Novel Diiron Site Structure and Mechanistic Insights into a Scavenging Nitric Oxide Reductase (E_value = 4.9E_55);-47% similar to PDB:1E5D RUBREDOXIN OXYGEN:OXIDOREDUCTASE (ROO) FROM ANAEROBE DESULFOVIBRIO GIGAS (E_value = 8.7E_44);-50% similar to PDB:1VME Crystal structure of Flavoprotein (TM0755) from Thermotoga maritima at 1.80 A resolution (E_value = 1.1E_30);","","","Residues 35 to 227 (E-value = 6e-17) place PG0723 in the Lactamase_B family which is described as Metallo-beta-lactamase superfamily (PF00753)Residues 257 to 386 (E-value = 1.4e-10) place PG0723 in the Flavodoxin_1 family which is described as Flavodoxin (PF00258)","Mon Jan 5 10:57:20 2004","34540586","","","","","","1","","","PG0804" "PG0724","862741","861893","849","ATGACACTACCTGCATTCATCACATGGGATTTCGATCCGGTTCTATTTACCCTCTTCGGGCACCCTATTGTCTGGTACGGTTTGCTCTTTGCATTGGGGCTGATCATTCTGGGCCCTTGGATAGAGAAAAAAATGTGGGAACACGAGAAGCTGGATTCCAAATGGTTCGAGTCCCTGGCCGTCTATGTCTTTGTAGGTACTATCGTCGGAGCGCGTTTGGGACATGTCCTATTCTATGACCCGGCATACTATTTGGCCAATCCGGCCAAGATATTCGTCACTTGGGAGGGTGGCTTGGCAAGCCACGGCGGTACCATCGGGATCATTATAGCCTGCTGGCTGTACTCACGCAGGGTGACGCGCAAATCTATTCTATGGGTATTAGATCGTTTGGCTGTGCCTACAGGTATCGTGGCCGCCATGATCCGTCTGGGCAATCTGACCAACAGTGAGATTTTCGGCCGCCCGACGACATTACCTTGGGGCTTCCGCTTTATTCGTTCGGAAGAGTATCGTCACTTGGTACCGAACATGGACATGGGATGTCATCCTACTCAGATATACGAAGCTTTATGCTATTTGGCGGTCTTTGCCCTCTGTATGTGGCTATACTGGAAGCGCGATGCTGCCCGACGCTACTCCGGGCTGATCGTGGGGGTTTTCCTGACAGGTATCTTCCTCTCTCGCTTTATCATCGAACGCATCAAGATCGTTCAGGAACCATGGGAGCTAAAGCTCATCGAATCAGTCGGCCTGAATATGGGACAGCTGCTCAGCATACCTTTCGTTCTTGCAGGCATTTGGCTTATCATCCGTGCCGTAAAGAATCCGATTACGCAGAAATTATCA","9.90","8.25","32400","MTLPAFITWDFDPVLFTLFGHPIVWYGLLFALGLIILGPWIEKKMWEHEKLDSKWFESLAVYVFVGTIVGARLGHVLFYDPAYYLANPAKIFVTWEGGLASHGGTIGIIIACWLYSRRVTRKSILWVLDRLAVPTGIVAAMIRLGNLTNSEIFGRPTTLPWGFRFIRSEEYRHLVPNMDMGCHPTQIYEALCYLAVFALCMWLYWKRDAARRYSGLIVGVFLTGIFLSRFIIERIKIVQEPWELKLIESVGLNMGQLLSIPFVLAGIWLIIRAVKNPITQKLS","862741 861893","TIGR ID: PG0805","prolipoprotein diacylglyceryl transferase","Inner membrane, Cytoplasm","Numerous significant hits using gapped BLAST to prolipoprotein diacylglycerol transferases including 34% similarity to gb|AAG02148 in Zymomonas mobilis, 35% similarity to gb|AAF38285/CP0447 and gb|AAD18460 in Chlamydophila pneumoniae and 31% similarity to gb|AAG03730 in Pseudomonas aeruginosa.This sequence is orthologous to CT252.","
InterPro
IPR001640
Family
Prolipoprotein diacylglyceryl transferase
PF01790\"[11-276]TLGT
TIGR00544\"[3-282]Tlgt


","BeTs to 12 clades of COG0682COG name: Prolipoprotein diacylglyceryltransferaseFunctional Class: MThe phylogenetic pattern of COG0682 is -----qvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB001640 (Prolipoprotein diacylglyceryl transferase) with a combined E-value of 4.4e-15. IPB001640A 97-107 IPB001640B 129-154 IPB001640C 215-239","Residues 57-271 are 35% similar to a (TRANSFERASE PROLIPOPROTEIN DIACYLGLYCERYL) protein domain (PD005412) which is seen in Q9Z8M7_BBBBB.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Mar 22 11:35:46 MST 2000","Thu Jan 4 17:57:29 2001","Thu Jan 4 17:57:29 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","Residues 11 to 276 (E-value = 7.8e-67) place PG0724 in the LGT family which is described as Prolipoprotein diacylglyceryl transferase (PF01790)","","34540587","","","","","","1","","","PG0805" "PG0725","863683","862781","903","ATGACAGACGACAAAAAGATTCGGGCAGCCATCGTAGGCTACGGCAATATCGGTCGGTATGCCTTGCAAGCGCTTAGAGAAGCTCCAGATTTTGAAATAGCCGGCATTGTCCGCCGCAATCCGGCCGAGGTTCCCTTCGAGCTCCAGCCTTTCCGTGTAGTATCCGACATCGAGCAACTCGAATCGGTCGATGTGGCCTTGGTTTGCTCACCAAGTCGTGAAGTAGAGCGAACAGCCTTGGAGATATTGAAAAAGGGAATATGCACTGCTGACAGTTTCGACATCCACGACGGTATTTTGGCCTTGCGTCGATCGTTGGGAGACGCCGCCGGAAAAAGTGGGGCGGCAGCCGTCATCGCTTCAGGCTGGGATCCGGGCAGCGACTCTGTAGTGCGCACACTGATGCAGGCTATCGTACCCAAAGGGATCACCTACACGAACTTCGGTCCGGGCATGAGCATGGGGCACACCGTAGCCGTAAAAGCCATAGACGGTGTCAAGGCCGCACTTTCTATGACCATTCCTCTCGGAACGGGTGTACATCGTCGCATGGTTTACGTAGAACTGCTTCCGGGACACAACTTGGAGGAGGTATCGGCTGCCATCAAAGCAGACGAGTATTTCGTTCATGACGAAACCCACGTGATACAGGTAGATGAAGTGGATGCCCTCATCGATATGGGGCATGGCGTCCGCATGGTGCGTAAGGGTGTAAGCGGCTCCACACAAAACCAGCGAATGTCATTCGACATGGAGATAAACAACCCCGCTCTCACCGGACAAGTACTGGTCTGTGCAGCTCGAGCAGCCATGCGCCAACAACCCGGAGCTTACACCTTACAGGAAATCCCCGTCATAGACCTTCTCCCCGGAGACAGGGAGCAGTGGATAGGAAAACTTTGT","5.50","-6.49","32490","MTDDKKIRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPFELQPFRVVSDIEQLESVDVALVCSPSREVERTALEILKKGICTADSFDIHDGILALRRSLGDAAGKSGAAAVIASGWDPGSDSVVRTLMQAIVPKGITYTNFGPGMSMGHTVAVKAIDGVKAALSMTIPLGTGVHRRMVYVELLPGHNLEEVSAAIKADEYFVHDETHVIQVDEVDALIDMGHGVRMVRKGVSGSTQNQRMSFDMEINNPALTGQVLVCAARAAMRQQPGAYTLQEIPVIDLLPGDREQWIGKLC","863683 862781","TIGR ID: PG0806","conserved hypothetical protein (possible meso-diaminopimelate D-dehydrogenase)","Cytoplasm","Gapped BLAST shows three significant hits. They are 34% similarity to a meso-diaminopimelate dehydrogenase in Bacillus sphaericus (dbjBAB07799), 28% similarity to a meso diaminopimelate dehydrogenase in Corynebacterium glutamicum (spP04964DDH_CORGL) and 29% similarity to D-2-hydroxyisocaproate dehydrogenase in Brevibacterium lactofermentum (dbjBAA13523). Residues 6 to ~40 show similarity to several glyceraldehyde 3-phosphate dehydrogenase genes including spQ9V1P1G3P_PYRAB, gbAAG18725, gbAAF42467 and spP39460G3P_SULSO.This sequence is similar to BT1979.","
InterPro
IPR000683
Domain
Oxidoreductase, N-terminal
PF01408\"[7-87]TGFO_IDH_MocA
InterPro
IPR010190
Family
Diaminopimelate dehydrogenase
TIGR01921\"[5-301]TDAP-DH
InterPro
IPR014521
Family
Meso-diaminopimelate D-dehydrogenase
PIRSF025648\"[4-301]TDDH
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.720\"[4-301]TG3DSA:3.40.50.720
SSF51735\"[5-179]TSSF51735
SSF55347\"[123-254]TSSF55347


","BeTs to 5 clades of COG0057COG name: Glyceraldehyde-3-phosphate dehydrogenaseFunctional Class: GThe phylogenetic pattern of COG0057 is amtkYqvCEBrhUJgpolin-Number of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","Residues 7-299 are 27% similar to a (MESO-DIAMINOPIMELATE D-DEHYDROGENASE OXIDOREDUCTASE NADP) protein domain (PD040960) which is seen in DDH_CORGL.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Dec 9 16:59:27 2003","Tue Jul 22 13:42:02 2008","Mon Jan 8 12:18:17 2001","","Tue Dec 9 16:59:27 2003","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Jul 22 13:42:02 2008","-43% similar to PDB:1DAP C. GLUTAMICUM DAP DEHYDROGENASE IN COMPLEX WITH NADP+ (E_value = 2.2E_22);-43% similar to PDB:1F06 THREE DIMENSIONAL STRUCTURE OF THE TERNARY COMPLEX OF CORYNEBACTERIUM GLUTAMICUM DIAMINOPIMELATE DEHYDROGENASE NADPH-L-2-AMINO-6-METHYLENE-PIMELATE (E_value = 2.2E_22);-43% similar to PDB:2DAP C. GLUTAMICUM DAP DEHYDROGENASE IN COMPLEX WITH DAP (E_value = 2.2E_22);-43% similar to PDB:3DAP C. GLUTAMICUM DAP DEHYDROGENASE IN COMPLEX WITH NADP+ AND THE INHIBITOR 5S-ISOXAZOLINE (E_value = 2.2E_22);","","","Residues 7 to 112 (E-value = 6.6e-05) place PG0725 in the GFO_IDH_MocA family which is described as Oxidoreductase family, NAD-binding Rossmann fold (PF01408)","Mon Jan 8 12:48:42 2001","34540588","","","","","","1","","","PG0806" "PG0726","864815","863724","1092","GTGCGTCTGATTACCTTTGCCGGACATTACTTTTCAAGGATTATAATAATGATCAATCGAGCACTTGTCCGATCCCGAGTTTTGCAACAAGCATATGTGTATTACCATCGAGATGATGCTGATATACAATCTGCCGAAAAAGAGTTGCTCAACAGTCTGGAGCAGACATACGACCTATACCTATATTATCTCCTCTTGGTTCCGGAGCTGACAAGACTGCATGCGGAAGCCCTCGAAGCCAACAAGAACAAGCACTTAGCGACCGAAAAGGACAAAAACCCCAATCTGCGTATGGTACGCAACCGGCTTGCCGAAAAGATCGAGAGCTGCAGGCCTTTGTGGGTAAGAGCCGAACAGAATGCTCTGAATTGGCGTTCCGAAGAAGCTTTTCTGCGACGCCTGCTGAAAAAGATCCATTTGTCCGAGACTTTCACCCGTTATATGAGATCCGATGCCACCGATGACTTCGAAGCCGACCGCTTGTTCTGGAACGAACTGATGCGCGACATCATCCTCCCCGATGAAGAACTGGCAGAAGTGATGGAAGAGCAAAGTATCTTCTGGGACAATCAAATACAACTCATCGAGAAAATCGAGACAGAAGAAGCTCCCGACATAGAGGAGGTGGAACAGTCGGTACGACAAGCAGTTGCCGATGGCAACTACCAAACGATCCGACAGGAAAATGCACCTATCGAAATCGTGAAGGAGTTCGTCCTCAAGACAATCCGACGGATCGAGCAAGACACCGATCCATCGGCTATCCTGCTTCCTGCATACAAGGAGAAAGACGATGCCGTATTCGGCACCACCCTACTGCGCAATGCCATCATCAACGGACAGGAATATCGCCATATCATCCGTGAAAATCTGATCAACTGGGAAGTGGATCGCATAGCGGACATGGATATGCTGATCATGCAACTGGCTATCGCCGAGCTGCTCCACTTCCCGAATATTCCGGTCTTGGTAACGATCAATGAATACATCGACCTCTCCAAGCTGTTCAGTACACCCAAGAGCGGAACGTTCGTAAACGGGTTGCTGGATGCTGTGGTCAAAAGTCTCAGAGAGAAAGGCAAACTACTCAAA","5.00","-12.31","42693","VRLITFAGHYFSRIIIMINRALVRSRVLQQAYVYYHRDDADIQSAEKELLNSLEQTYDLYLYYLLLVPELTRLHAEALEANKNKHLATEKDKNPNLRMVRNRLAEKIESCRPLWVRAEQNALNWRSEEAFLRRLLKKIHLSETFTRYMRSDATDDFEADRLFWNELMRDIILPDEELAEVMEEQSIFWDNQIQLIEKIETEEAPDIEEVEQSVRQAVADGNYQTIRQENAPIEIVKEFVLKTIRRIEQDTDPSAILLPAYKEKDDAVFGTTLLRNAIINGQEYRHIIRENLINWEVDRIADMDMLIMQLAIAELLHFPNIPVLVTINEYIDLSKLFSTPKSGTFVNGLLDAVVKSLREKGKLLK","864815 863724","TIGR ID: PG0807","hypothetical protein with conserved nusB domain","Cytoplasm","Significant hits using Gapped BLAST of the carboxyl terminal 100+ residues to N-utilization substance proteins B (nusB) domains including 36% similarity to a nusB protein in Bacillus subtilis (sp|P54520|NUSB_BACSU 31% similarity to a transcriptional terminator in Bacillus halodurans (dbj|BAB06504) and 39% similarity to a nusB protein in Thermotoga maritima (gb|AAD36829).","
InterPro
IPR006027
Domain
NusB/RsmB/TIM44
G3DSA:1.10.940.10\"[206-364]Tno description
PF01029\"[211-356]TNusB
noIPR
unintegrated
unintegrated
signalp\"[1-25]?signal-peptide


","BeTs to 10 clades of COG0781COG name: Transcription termination factor NusBFunctional Class: KThe phylogenetic pattern of COG0781 is -----qvcebrhuj--olinxNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 261-352 are 36% similar to a (PROTEIN NUSB TRANSCRIPTION TERMINATION) protein domain (PD005242) which is seen in NUSB_BACSU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Mon Jan 8 13:18:33 2001","Mon Jan 8 13:16:03 2001","Mon Jan 8 12:55:25 2001","","Fri May 4 11:09:05 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri May 4 11:09:05 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 211 to 356 (E-value = 1.4e-10) place PG0726 in the NusB family which is described as NusB family (PF01029)","Fri May 4 11:09:05 MDT 2001","34540589","","","","","","1","","","PG0807" "PG0727","872105","865158","6948","ATGCAACAAATAACCCCTCTGCCCGAAAATGCACGTAAGCATTCCTATTTCGACTTCAGCGAAAAGATCCAAACCAACGTGCAGGCATCAGTGGGTACGAAGCTCAATTTCGGGATGAACTATAATACAGAGAGTACGTTCGATTTCGATGCAAAGAAGCTGAAGTTGGCTTTCGAAGGAGAGGAAGATGATATAATCAAACTGATCGAAGCCGGCAATGTATCCATGAATACGCGCAACACTCTGATTCGAGGCGGAGCGAGCTTATTCGGAATACACACGAAGATGCAGTTCGGCAAATTTGACGTGGACATGGTGGTCAGTCAGCAGGAGGCAGAGACCAAGAGAGTCAATACCAAAGGCGGTGCGCAGACTACCCCATTCGAATTATCGGCAGGACAATACGATGAGAATCGGCACTTCTTCTTCGGCCATTACTTCCGTGATCGTTACGATGGTGCCATGAAGACACTGCCCTTTATCAGCTCAGGTGTCAAAATCAATCGTGTGGAAGTATGGGTAACCAATAAAAAAGGCAATTTCGACAATACACAGACTCGCAATATCGTAGCCTTTACCGATTTGGGAGAGCCGGAAAAGATCGCTTTGCCTTCCGTTTCTCCCTCTATGGCCACTAACGGTTTGCCGGCCAATCAGGCCAATTCGCTCTATCCTCTGCTTGTATCGATGCCGAATTTGCGCTTTATCGATCAGGTAACACAAGAACTAAGCGGAATCATGCAAGGCGGCAGAGACTATGAAAAAGTGGAGAGTGCTCGCCTATTGAACCCGGCAGACTACACAGTCAATAGCATTCTCGGCTATATCAGCTTGAATATGCGCCTGTCTGCCGATGAGGTACTGGGAATAGCATTCGAATACACATACAACGGACAGGTTTATCAGGTGGGAGAGTTTTCGACAGACCGGCCGGACAACTCCACGGAGAACCTCTACGTGAAGCTGCTCAAAGGGACGGCGATGAGTTCGACTTCTCCGTATTGGCACTTTATGATGAAAAACGCTTATCAGTTGGGAGGAGGCGTCTATAATGTGCAGAAGGAAAAGTTCAAACTGAATGTTTTCTATCAGAGTGATAGTGCAGGCGTCTACCAACCATATATCAGTGAAGGCAAGATTAAGGGACAGTTGCTTCTGCGCGTGTTGGGCATGGACAGACTGGATGCCAAACAAGAGCCTTACCCTGATGGTACGTACGACTTTGTCGATGGCTATACGATCCTCCCTCAGAAAGGAGTTGTGATCCTCCCTACCGTGGAGCCGTTCGGAAAGACCCTTGCCGATGCGTTTGGCGATCCTGTATTGGCGAAAAAGTACTGCTTCCAAGAGCTATACGATACAACGGCAGTGGCTGCACAGCAAGTGGCAGAGAAGAACAAATTTATCTTCCGAGGCGAATACAAAGCTTCTCCGGGCGGAGACATTTCTTTGGGAGCTATCAACGTAACACCCGGATCCGTCGTAGTGACGGCCGGCGGTGTCAAGCTGACGGAGAATGTCGATTATACGGTAGACTACCTCTCCGGCAACGTATCGATCATCAATGAAGCGATTCTCTCTTCGGGAACTCCCATCAATGTGTCGCTCGAGAACCGAGGGCTGATGAATATGCAGCGCAAAACGATGTTCGGTATAGATCTGAACTACAACTTTTCCAAAGACTTCACCCTCGGCGGCACCTTCATGCACCTGAGCGAAATGCCGCTGACGACCAAATCCGTTATCGGAGACGAGTCGCTCAAGAATACGCTTTGGGGACTTAATCTGAACTACCGTACTCAAGCCCAATGGCTGACGAATGCACTCGATCTTTTGCCTTTCGTCGAACTGACGAAACCCAGTGAAATCACGGTAAACGCTGAATTTGCTCACTTGATCCCCGGACATTATCAGAGCAAATACGCCCAAGGCAATAGCTACTTGGACGACTTCGAAAGCTCTCAGAGCTATATTGATCTGATGAATCCATATTCGTGGATGCTTTCCAGTACACCTTTTCAAGATGGAGCAGGGCCGGTGCTTTTCCCGGAAGCATCATTGACGAACGATATCGACTATGGCAAGCATAGAGCCAAACTATCGTGGTTCTACATTGATCCGATATTCACAAGAGAGAATTCCGCAGGTATGCCCGCCCACTTGAAGAATGACCTCGAACAGCTCTCCAACCATTATGTCCGCGAAGTGAAGACCTCCGAGCTTTTCCCGTATCGCGATCAGACGTACAATATGAACAGCTATCTGCACACGCTGCTGATGTCCTATTATCCGTCTGAGCGTGGCCCATACAACCTCAATACGGTGGATATGCAGTCGGACGGTCATTTGGCCAACCCTCAATCCAACTGGGGCGGTATTATGCGCAAGATAGATCAGAGCGACTTCGAAGCATCCAATATCGAGTACGTAGAGTTTTGGCTTCTCGATCCTTTCATCTACAACAAAGAAACCGCCAAAGGGGGATCGATGTATATCAATTTGGGAGAAATCTCCGAAGAAGTTCTGAAAGACGAAAAGAAGTTTTTCGAAAACGGTATGCCCATCAACGATGATCCTGCTGCCATAGAGACCACGGTATGGGGCAAGGTGCCCAAACGTCAGGGTACAGGTTACGCTTTCGATAATACTGCCGGAGCACGACCGAAACAGGACGTCGGCTTTAACGGACTTACGACGGCAGAGGAAAAAGACTTCCCTACATATACAGAGTACATATCCCGCTTGGCCTCGATCGTATCGCCGGATGTTTTGAACCAATGGAGTACAGATCCTTTCAGTCCGATCAACGATCCGGGAGGGGATAACTTCCACCACTATAGAGGGGCAGATTACGATGAGGCACGGAAGTCTATTCTCGATCGTTATAAGCAGTATAACGGAGTGGAAGGCAACTCGGCCGAAGCCACTAACAACATTACCGGATACAACGTGTCCAGCCGTTTGGTGCCGGATGTGGAAGACATCAATCAGGACAATACGCTCAACGAGATAGAGAAGTATTTCCAGTACCGTGTGGAGCTGCATCCCTCTAAAATGGTTGTGGGGCAAAACTATATTGTCGATTCTCGCACCAAAGAGGTAGAGTTGCGCAACGGTAAAAAGGAAACGATAACCTGGTATCAGTTCAAAGTCCCCGTGCGGGAGTTCGAGAGAAAGATAGGAGGCATTACGGACTTCAAGACCATCCGATTCATGCGTGTCTACCTGACGAACTTTTCTGAAGAGGTTATTTTACGATTCGGAACTTTCAAATTGGTGCGTGGCGATTGGCGACAGTACGAACGTGAACTCCATCCGGCCAACCTTACACCCATTTCGAATGCAAAACTGGAAGTAAGTACCGTAAACATAGAGGAAAACGGCGACCGCAAGCCTGTGAACTATGTGCTTCCTCCGGGCGTATTGCGTTCACTCGATCCCCAGCAAGCACAGAGTACTCAGCAAAACGAACAGTCCATGAGCCTGAAAGTCCGGACACTGGCACCGGGCGATGCACGGGCTGTATATAAGAACACGGGCTACGACCTGAGACGTTATAAGCGTTTGCAGATGTTTACGCATGCCGAACGCCTTCAGGATGAAGACGGCACGCATACAGGGAATGGAGATCTATCCGTCTTCATCCGCTTGGGGACGGACTACCGGAACAATTATTACGAATACTCCATACCGTTGCGCCTGACTCCTTTCGGTACTTATTCGACCAATAGCGAAAGCGATAGAGAAACCGTTTGGCCGAAAGAAAATATGTTCGACTTCAAACTGTCTGCCCTTACTGATATTAAGACGAAACGCAACAGGGAGAAAGCAGCAGGCAATCCTGCTGCCGACTTCTATCGCCTTTTCTCCGAACCCGACCCCGAAAACACAGGTAATACTGTGAGCGTTATGGGAAATCCGACACTGAGTGAAGTCAAGACTATCATGATCGGTATTCGTAATAATAGTACTGACATCAAAAGCGCCGAGATATGGGTCAATGAGCTCAGACTCACGGACTACGATGAGAAAGGCGGATGGGCTGCCAATACCACCATCAATATGCAGCTTAGCGATTTGGGATCGGTGAATATGCGCGGACAGATGATAACCGCAGGATTCGGTGCTTTGGACGAGTCTCTCACACAGCGAGCCATAGAAGATACGCGTACACTCAACTTCTCCACCAATTTGGAGCTTGGCAAGTTCTTCCCCGAAAAAGCTCAGATCAGCATACCTTTCTATTACTCGGTATCGGATGAGAAAGTATCTCCCCAATACAATCCCTTTGATCAGGACATTCTCCTGAAAGATGCTCTGGATGCTCTGCCCGACAAAAGTTCTCGCGACTCTCTCAGCAGACTGAGCGAGAATCGTATGACGACGCACAGTTTGGCTTTGAACAATATCAGAGTCAATGTCAAGAGCAAACACCCGATGCCTTACGATCCTTCCAACTTCTCATTCAATTATTCTTACAACAAAAGCGAACGACACAATCCCGACATGGAATACAATACGGATTTGAAGTGGAGTGCCGGTATGGTATATGATTATTCGCCTCTGCTCAAACCGATCAAGCCGTTTGCCAAAATCAAAAAGGCCGGAGCCTATCTGAAAGGTTTTGCCATCAATCCGCTCCCATCGAAGATCACCTTCCAGACCAATATGCAGCGTTCTTATTCGGAGGAACAGGTACGCAACTTTGCTTATGGAGTAGATCAGGCCGAGAAGCTACCCGTGACGTTCATGCAGAATTTCGTTTGGGATCGCGCTCTGGCTGTCAATTGGAATCCGATCAATAGTCTGAGGATCAACTTCCGTAGTGGCACCAATGCCCGTATTGAAGAACCGCATGTACAAGTGAACAAAAAACTCGCTCCCGATGAGTATAAGATATGGCGCGACTCCGTCCGCCGCAGTATTGCCGAATTGGGAACTCCTATTGCATACGACCAAACGTTCAATGTGTCGTATACGTTGCCGACTGCCCAAATATCCGCACTGAATTGGGTGAATGGTTCATTGACTTATAATGCCGTGTATAATTGGGATCGTGGAGCGAAAACGACTACCGAACAAATCATTGGGAACACGATCCGGAATCAGGCAACGCTGGAACTTCCCCTGCAACTCAATCTGACATCGCTGTATCGCAAATCTGCTTTCCTCAAGAGAATAGAGCAGCACATCACGAATCCGGAGAAAAAGGATCCTGTAAAAAAAGCAGCCCAGCCATTGACCAAGAAAATCCGGTTGCTCCCCGATTCCACGGTAACACTGACGCACACTTTTGCGTCCAAGAAAGTGAGAGTGTCCGCTCTCGGTCCGGATGGCAAGATGTATCCGCTGAAGACAAAAATCAAGGACAAGAATACAATCGTCATTTTAAATAATGACAGCATAGAGATCAATGTAACGGTAACTCCCCCGAGGCAGAACGGCTCCACTCCTGCATTCGGTGCGATAGGCGAAAGGATGGTATACGCCTTGATGATGCTCAAGAGCATCAACCTTAACTACCGGCAATCGTCCGGCTTGCATCTGCCCGGATTCTTGCCCAACATCAAAGCTGCAGGCGGACAAGGCTCCGTGGATGGTGTTTTGGCACCGGGATGGGACTTTGCTTTCGGTCTTACGGGAGAAGATTTCGTGGAAAAAGCCGCGCAGAAAGGTTGGCTTATCGGTGGGCAGCAAAACGTATCACCTTCTGTCTACTCGGAGAGCAATTCATTCGAGATCAAGATGACGCTCGAACCGATTCACGAACTGCGCATCAACCTCACAGCCAACAGAACCGATACCCGACAAACGCAGACCCAATACGTCTATGCCGGCATGCCACGTACTTATGGAGGAAATTTCGTGATGACGACCATCGGACTGAAAGGCATGTTCAGCAGTTCGTCCGGAGCGACGGGCTATGCCTCGCAAGCCTTCAATCAGTTCCTCCACAATCGGGAGATAATCGCAGGGCGTATTATGGCTCAATATCATGGAGCCACTTATCCCTCTTCCGGATTCATGGAAGGAAGCAGTCTGGCCGGCCAGCCGGTTTCTCTGGAAACCAGTGCCGTTTCTCTCAACTCAGCCGACGTGCTTATTCCGGCTTTCCTCAGTGCTTATACTCAGAGGTCAGTGGGAAAAATCGGCCTGTCGGCATTCCCCTCATTGTCCTCCATTCTCCCCAACTGGAATGTCAGCTACACGGGCTTGAGCAAAACCGAACTGCTCAAGAAATACTTCCGGAATGTGCGTATCAACCATGCTTACCGCGGTATATACAACGTAGATAGCTATAGCTCTTACCTCGGTTGGGTGGGCTTGACCGATGGTAGCAACCTGGGCTTTATCCAAGACCCGTCGGACCCCAGTACGCTGACTCCCGTTGCATCCATGCCATTCGACATTCCGTTTGTTCGTCTCGAAGACAGTTTTGCTCCCCTGCTCGGTGTGGAAGTTACGTTTATGAGTGGATTGGGAATCAATACGGACTACAGAAAGACTCGCCGTCTGAATCTGAATCTATCGGCTTATCAGCTCGTGGAGTCGAATGAAGATCAGATAACCGTAGGGATGAGCTATAAGGCAGAGAATTTTGCCAAACTCATCGGCCTGCAACGGACAAGACCCACGAGGAAGGCAAAAGGAGGGCAAAAGAACAACGAGACCATGGCTCCGCGTACCGGTGGGGCACTGACTCTCCGAGTGGACTATGCTTACAGCCGCACACTGACGCTGATTCGCAAGATCCAAGATGCTTACACACAGGCCACGAATGGCAATATCAGCCACAAGATCAACGTCAGTGCGGACTACGACATCAGCCGCATGCTTACCCTGCGAGCTTATTACGATTGGGATATGAACCATCCGCTTGTCAGCTCAGCCTCCTTCCCTATCACGAACAGCAATTTCGGCGTCAGCTTCCGTTTCAATCTGACGCAG","6.90","-2.09","260501","MQQITPLPENARKHSYFDFSEKIQTNVQASVGTKLNFGMNYNTESTFDFDAKKLKLAFEGEEDDIIKLIEAGNVSMNTRNTLIRGGASLFGIHTKMQFGKFDVDMVVSQQEAETKRVNTKGGAQTTPFELSAGQYDENRHFFFGHYFRDRYDGAMKTLPFISSGVKINRVEVWVTNKKGNFDNTQTRNIVAFTDLGEPEKIALPSVSPSMATNGLPANQANSLYPLLVSMPNLRFIDQVTQELSGIMQGGRDYEKVESARLLNPADYTVNSILGYISLNMRLSADEVLGIAFEYTYNGQVYQVGEFSTDRPDNSTENLYVKLLKGTAMSSTSPYWHFMMKNAYQLGGGVYNVQKEKFKLNVFYQSDSAGVYQPYISEGKIKGQLLLRVLGMDRLDAKQEPYPDGTYDFVDGYTILPQKGVVILPTVEPFGKTLADAFGDPVLAKKYCFQELYDTTAVAAQQVAEKNKFIFRGEYKASPGGDISLGAINVTPGSVVVTAGGVKLTENVDYTVDYLSGNVSIINEAILSSGTPINVSLENRGLMNMQRKTMFGIDLNYNFSKDFTLGGTFMHLSEMPLTTKSVIGDESLKNTLWGLNLNYRTQAQWLTNALDLLPFVELTKPSEITVNAEFAHLIPGHYQSKYAQGNSYLDDFESSQSYIDLMNPYSWMLSSTPFQDGAGPVLFPEASLTNDIDYGKHRAKLSWFYIDPIFTRENSAGMPAHLKNDLEQLSNHYVREVKTSELFPYRDQTYNMNSYLHTLLMSYYPSERGPYNLNTVDMQSDGHLANPQSNWGGIMRKIDQSDFEASNIEYVEFWLLDPFIYNKETAKGGSMYINLGEISEEVLKDEKKFFENGMPINDDPAAIETTVWGKVPKRQGTGYAFDNTAGARPKQDVGFNGLTTAEEKDFPTYTEYISRLASIVSPDVLNQWSTDPFSPINDPGGDNFHHYRGADYDEARKSILDRYKQYNGVEGNSAEATNNITGYNVSSRLVPDVEDINQDNTLNEIEKYFQYRVELHPSKMVVGQNYIVDSRTKEVELRNGKKETITWYQFKVPVREFERKIGGITDFKTIRFMRVYLTNFSEEVILRFGTFKLVRGDWRQYERELHPANLTPISNAKLEVSTVNIEENGDRKPVNYVLPPGVLRSLDPQQAQSTQQNEQSMSLKVRTLAPGDARAVYKNTGYDLRRYKRLQMFTHAERLQDEDGTHTGNGDLSVFIRLGTDYRNNYYEYSIPLRLTPFGTYSTNSESDRETVWPKENMFDFKLSALTDIKTKRNREKAAGNPAADFYRLFSEPDPENTGNTVSVMGNPTLSEVKTIMIGIRNNSTDIKSAEIWVNELRLTDYDEKGGWAANTTINMQLSDLGSVNMRGQMITAGFGALDESLTQRAIEDTRTLNFSTNLELGKFFPEKAQISIPFYYSVSDEKVSPQYNPFDQDILLKDALDALPDKSSRDSLSRLSENRMTTHSLALNNIRVNVKSKHPMPYDPSNFSFNYSYNKSERHNPDMEYNTDLKWSAGMVYDYSPLLKPIKPFAKIKKAGAYLKGFAINPLPSKITFQTNMQRSYSEEQVRNFAYGVDQAEKLPVTFMQNFVWDRALAVNWNPINSLRINFRSGTNARIEEPHVQVNKKLAPDEYKIWRDSVRRSIAELGTPIAYDQTFNVSYTLPTAQISALNWVNGSLTYNAVYNWDRGAKTTTEQIIGNTIRNQATLELPLQLNLTSLYRKSAFLKRIEQHITNPEKKDPVKKAAQPLTKKIRLLPDSTVTLTHTFASKKVRVSALGPDGKMYPLKTKIKDKNTIVILNNDSIEINVTVTPPRQNGSTPAFGAIGERMVYALMMLKSINLNYRQSSGLHLPGFLPNIKAAGGQGSVDGVLAPGWDFAFGLTGEDFVEKAAQKGWLIGGQQNVSPSVYSESNSFEIKMTLEPIHELRINLTANRTDTRQTQTQYVYAGMPRTYGGNFVMTTIGLKGMFSSSSGATGYASQAFNQFLHNREIIAGRIMAQYHGATYPSSGFMEGSSLAGQPVSLETSAVSLNSADVLIPAFLSAYTQRSVGKIGLSAFPSLSSILPNWNVSYTGLSKTELLKKYFRNVRINHAYRGIYNVDSYSSYLGWVGLTDGSNLGFIQDPSDPSTLTPVASMPFDIPFVRLEDSFAPLLGVEVTFMSGLGINTDYRKTRRLNLNLSAYQLVESNEDQITVGMSYKAENFAKLIGLQRTRPTRKAKGGQKNNETMAPRTGGALTLRVDYAYSRTLTLIRKIQDAYTQATNGNISHKINVSADYDISRMLTLRAYYDWDMNHPLVSSASFPITNSNFGVSFRFNLTQ","872354 865158 [Bad Olap 950 284 0]","TIGR ID: PG0809","gingipains secretion","Outer membrane, Periplasm","This sequence corresponds to gi:34396903 in Genbank.Its nearest neighbor in the NR database is gi:48854166 from Cytophaga hutchinsonii.","
noIPR
unintegrated
unintegrated
SSF56935\"[2184-2312]TSSF56935


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 13:39:34 MDT 2001","","Thu Jun 14 13:39:34 MDT 2001","Thu Jun 14 13:39:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:39:34 MDT 2001","Thu Jun 14 13:39:34 MDT 2001","","","Mon Jul 7 16:39:51 2008","Thu Mar 3 15:51:09 2005","Mon Jan 8 13:38:46 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Jul 7 16:39:51 2008","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Jun 14 13:39:34 MDT 2001","34540590","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","Saiki K, Konishi K., Identification of a Porphyromonas gingivalis novel protein sov required for the secretion of gingipains.Microbiol Immunol. 2007;51(5):483-91.PMID: 17579257","Mon Jul 7 16:39:51 2008","Mon Jul 7 16:39:51 2008","1","","","PG0809" "PG0728","872658","872071","588","TTGATAATGGAAAAGAAAAACAAACCCATTCGGCTACTTGCAGCTCTACTGCCCATAATCGCCGGCCTTGTTTTGGTCACATGGCGTCCGGCGAGTGGCTCCGTACCTGCCCGGACTGCCATCAACAATCACTATACAACTCCCACTCCGGCCGATACGACTCGTTTCCCCGTCAAGAAGACCCAAGCTAAAGACTACCGTTATCTGGGTGGCAACTATCCACTCGATCTGAAGACTCCGGATAACATCCGCACCGAATTTATTTACGACGAGAAGACCAATACTTATCTGCTTGTGACCAAGCTTGGGGATAAACCTCTGGGCAGTCCTATACCCTTCACACCCGAAGAATACCTACGCTATATGCAGCGTGATTCCATCCGCCGTTACTTCATGGAAAAAGAACGACTTGAAGCTCAGCAGGAGGGTAAGAAGCGGTTCAATCCTTTGGAAATGTCTTTCGATCTCGGTCCGGCCGAGAAGCTCTTCGGTCCCGGTGGGGTCAAACTCCGTACTCAAGGATCGGCTGAGGTGGCCATGGGGGCTAAGAGCAATGCAACAAATAACCCcTCTGCCCGAAAATGCACG","10.60","11.19","22051","LIMEKKNKPIRLLAALLPIIAGLVLVTWRPASGSVPARTAINNHYTTPTPADTTRFPVKKTQAKDYRYLGGNYPLDLKTPDNIRTEFIYDEKTNTYLLVTKLGDKPLGSPIPFTPEEYLRYMQRDSIRRYFMEKERLEAQQEGKKRFNPLEMSFDLGPAEKLFGPGGVKLRTQGSAEVAMGAKSNATNNPSARKCT","872658 872071 [Shorter 949 284 99]","TIGR ID: PG0810","gingipains secretion","Periplasm","Using gaped BLAST residues 78-168 show weak similarity (29% similarity) to a transcription termination NusA protein in Aquifex aeolicus (gbAAC06581), E value 1.1.","
noIPR
unintegrated
unintegrated
signalp\"[1-33]?signal-peptide
tmhmm\"[12-32]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Mon Jul 7 16:40:31 2008","Mon Jul 7 16:40:31 2008","Mon Jan 8 13:44:16 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Jul 7 16:40:31 2008","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540591","","Saiki K, Konishi K., Identification of a Porphyromonas gingivalis novel protein sov required for the secretion of gingipains.Microbiol Immunol. 2007;51(5):483-91.PMID: 17579257","","Wed Jul 9 18:35:00 2008","Wed Jul 9 18:59:55 2008","1","","","PG0810" "PG0729","873300","872695","606","ATGATAGAGTATCTCAAGGGTGCAATAGTCGGTTTGACGCCGACAAACCTCGTGATCGAGTGTGCGGGAGTGGGTTATGATGTGAATGTCTCGCTCACCACTTATTCTGCCTATCAGGGGAAGAAAGAGGGACTTATTTGGATTACACAACTGATCCGAGAAGATGCCCATTTATTGTATGGCTTTTCCACGAAAGAAGAGCGTACGCTCTTCGGCCAACTCACATCTGTCAGCGGTGTCGGGCCTACGACGGCACAGCTCATCCTATCTTCCTATGCTCCTCAAGAGCTGGCCGCACTCATTACCACAGGGCAGGCCGATGCGCTGAAAGCCGTGAAGGGCATCGGTCTGAAGACCGCTCAGCGTATCATCGTGGATCTGAAAGGTAAGATACAACTGGAAACCTCCTCAGACGAGATCTTGTCTGCACGGACGGCTGTAGGAGATGCTGCTCTGAATACCATAGCTTCGGGAGAAGAAGCCATCAGTGCTCTAAAGATGCTTGGCTTTGCCGATCCGGCTATACGCAAAGCGGTCAAGTCCATTCTCTCCGAGGATTCGTCCTTAGCTGTCGAAGATATTATCAAGCGAGCATTACGAATGTTA","5.40","-1.81","21441","MIEYLKGAIVGLTPTNLVIECAGVGYDVNVSLTTYSAYQGKKEGLIWITQLIREDAHLLYGFSTKEERTLFGQLTSVSGVGPTTAQLILSSYAPQELAALITTGQADALKAVKGIGLKTAQRIIVDLKGKIQLETSSDEILSARTAVGDAALNTIASGEEAISALKMLGFADPAIRKAVKSILSEDSSLAVEDIIKRALRML","Holliday junction DNA helicase RuvA","TIGR ID: PG0811","Holliday junction DNA helicase RuvA","Cytoplasm","Numerous strong hits using gapped BLAST to Holliday junction DNA helicases including 36% similarity to embCAB85432 and gbAAF40719 in Neisseria meningitidis, gbAAG04355 in Pseudomonas aeruginosa and gbAAC74931 in E.coli. This sequence is also orthologous to CT501 and HI0313.","
InterPro
IPR000085
Family
Bacterial DNA recombination protein RuvA
TIGR00084\"[1-200]TruvA
InterPro
IPR003583
Domain
Helix-hairpin-helix DNA-binding, class 1
SM00278\"[72-91]T\"[107-126]THhH1
InterPro
IPR010994
Domain
RuvA domain 2-like
SSF47781\"[64-141]TRuvA_2_like
InterPro
IPR011114
Domain
RuvA, domain III
PF07499\"[156-202]TRuvA_C
InterPro
IPR011132
Domain
RuvA-like, C-terminal
SSF46929\"[154-202]TRuvA_C-like
InterPro
IPR012340
Domain
Nucleic acid-binding, OB-fold
G3DSA:2.40.50.140\"[1-65]TOB_NA_bd_sub
InterPro
IPR013849
Domain
Bacterial DNA recombination protein RuvA, domain I
PF01330\"[1-61]TRuvA_N
InterPro
IPR013850
Domain
Bacterial DNA recombination protein, RuvA, central
PD006268\"[71-130]TRuvA
noIPR
unintegrated
unintegrated
G3DSA:1.10.150.20\"[66-148]TG3DSA:1.10.150.20
SSF50249\"[1-62]TNucleic_acid_OB


","BeTs to 11 clades of COG0632COG name: Holliday junction DNA helicase subunitFunctional Class: LThe phylogenetic pattern of COG0632 is ------vcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 1-200 are 36% similar to a (HELICASE HOLLIDAY JUNCTION RUVA) protein domain (PD006268) which is seen in RUVA_PSEAE.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","Wed Mar 22 11:07:03 MST 2000","","Sun Feb 27 05:24:04 2005","Sun Feb 27 05:24:04 2005","Thu Apr 11 15:51:04 2002","","Thu Apr 11 15:51:04 2002","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Sun Feb 27 05:24:04 2005","-57% similar to PDB:1BDX E. COLI DNA HELICASE RUVA WITH BOUND DNA HOLLIDAY JUNCTION, ALPHA CARBONS AND PHOSPHATE ATOMS ONLY (E_value = 9.1E_26);-57% similar to PDB:1C7Y E.COLI RUVA-HOLLIDAY JUNCTION COMPLEX (E_value = 9.1E_26);-57% similar to PDB:1HJP HOLLIDAY JUNCTION BINDING PROTEIN RUVA FROM E. COLI (E_value = 9.1E_26);-56% similar to PDB:1CUK ESCHERICHIA COLI RUVA PROTEIN AT PH 4.9 AND ROOM TEMPERATURE (E_value = 3.4E_25);-50% similar to PDB:1IXR RuvA-RuvB complex (E_value = 2.5E_23);","","","Residues 1 to 61 (E-value = 8.6e-21) place PG0729 in the RuvA family which is described as RuvA N terminal domain (PF01330)","Thu Apr 11 15:51:04 2002","34540592","","","","","","1","","","PG0811" "PG0730","873982","873740","243","ATGGAATTATGCTCAAGGCTCATCGAGGTCAAGTCCTCAAGTGAAAGTCAAAAACAACTCAATCGGATGATCAGTAAGACGCGCTGCTTGATAGAACGTACCTTCGGTAGTATTCGACGATGGTTCTGTGGCGGACGATGTCGCTATCGAGAGTTAGCCAAGACACATACCCGGAATATCCTTGAAGCTATGGCCTACAATCTCAAGCGTATGCCGGGGCTTCTTGTGCTTCAAGGCGCAAAA","11.20","11.03","9447","MELCSRLIEVKSSSESQKQLNRMISKTRCLIERTFGSIRRWFCGGRCRYRELAKTHTRNILEAMAYNLKRMPGLLVLQGAK","873982 873740","Member of the IS5 family of elements. Equivalent to the C-terminal domain of full-length ISPg1 sequences such as PG1662.TIGR ID: PG0812","ISPg1 fragment","Periplasm, Cytoplasm","Residues 11-76 are 63% similar to residues 291-356 of the previously sequenced transposase (AJ130872) from P.gingivalis.","
InterPro
IPR002559
Domain
Transposase, IS4-like
PF01609\"[24-68]TTransposase_11


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 24-76 are 71% similar to a (TRANSPOSASE ORF7 INSERTION SEQUENCE) protein domain (PD187845) which is seen in Q9ZA61_PORGI.","","","","","","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","","","","Fri Feb 16 15:41:49 MST 2001","Wed Feb 14 12:35:37 MST 2001","Tue Jan 2 12:24:19 MST 2001","Tue Jan 2 12:14:50 MST 2001","","Wed Feb 14 12:35:37 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG0730 is similar to the C-terminal regions of PG0044, PG0169, PG0740, PG1798, PG1755, PG1662, PG1422, PG1267, PG1230, PG1184, PG1087, PG1062, PG1050, PG0918, PG0763, PG0756, PG0686, PG1231, PG0883, PG0689, PG0499, PG0420, PG1895, PG1665, PG1215, PG0839, PG1159, PG1608, PG1919, all ISPg1-related sequences.","Tue Apr 3 16:27:41 MDT 2001","Wed Feb 14 12:35:37 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Apr 3 16:27:41 MDT 2001","","","Hanley,S.A., Aduse-Opoku,J. and Curtis,M.A.A 55-kilodalton immunodominant antigen of Porphyromonas gingivalisW50 has arisen via horizontal gene transferInfect. Immun. 67 (3), 1157-1171 (1999)Maley,J. and Roberts,I.S.Characterisation of IS1126 from Porphyromonas gingivalis W83: a new member of the IS4 family of insertion sequence elementsMicrobiol. Lett. 123 (1-2), 219-224 (1994)Shibata,Y., Hayakawa,M., Takiguchi,H., Shiroza,T. and Abiko,Y.Determination and characterization of the hemagglutinin-associatedshort motifs found in Porphyromonas gingivalis multiple geneproducts. J. Biol. Chem. 274 (8), 5012-5020 (1999)","","Wed Feb 14 12:35:37 MST 2001","","1","","7","PG0812" "PG0731","874752","874255","498","ATGAAACACTCTTTCCTGCGTCAAATCAATGCCGGTTTTGATTGGCGTGGTATTCGCACACTGCTGAACAAGAAATACACCAAGACACAGAATGCCATAGGTAACCCTGCCTACGATGCGCTGTTGATGTTCAAGATTCTACTCTTGGAGACTTGGTATGGTTTGAGTGACTACGAGGTTGAGGAGTGCATCAACGACTCCTTGCTTTTCAGTGAATTCCTTGGCTTGGACCTCGGCTTCCCTTCCCCCGACCATAGCACGATCAGTCGTTTCCGTAGTGAACTCACTCGCTTGGGGATTATGGATAAACTCCTTCGGGAGCTGAACAAGCAGTTCAAGAAGCACGGCATCAGCCGTATCGATCAAGGCGCCATCGTTGATGCGAGCATTGTGGATAGTCCTTACGCCCCTGATGGCAACGTGGTCATAGAAGTGGCTGAAGATCGAGAGGATACTCGTTCGGAGGAAGCTCGTACACAGCCAGGAGGCTTATCATTG","5.10","-4.32","18809","MKHSFLRQINAGFDWRGIRTLLNKKYTKTQNAIGNPAYDALLMFKILLLETWYGLSDYEVEECINDSLLFSEFLGLDLGFPSPDHSTISRFRSELTRLGIMDKLLRELNKQFKKHGISRIDQGAIVDASIVDSPYAPDGNVVIEVAEDREDTRSEEARTQPGGLSL","874752 874255","Member of the IS5 family of elements.NO TIGR ID corresponds to this gene.","ISPg1 fragment (IS1106-related element)","Cytoplasm","PG1662 is equivalent to the N-terminal residues of the previously sequenced AJ130872 and AB015879 in GenBANK.Several hits in gapped BLAST to previously sequenced transposases in P.gingivalis. Residues 34-134 are 39% similar to the ORF1169a from B.fragilis (X76949).","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 2-84 are 63% similar to a (TRANSPOSASE PROTEIN INSERTION ELEMENT) protein domain (PD007264) which is seen in Q9ZNB4_PORGI.Residues 85-132 are 62% similar to a (TRANSPOSASE ORF7 INSERTION SEQUENCE IS1126-LIKE GENE) protein domain (PD187846) which is seen in Q9ZA61_PORGI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Wed Feb 14 09:16:38 MST 2001","Wed Feb 14 09:19:50 MST 2001","Wed Feb 14 09:19:50 MST 2001","Tue Jan 2 12:30:07 MST 2001","","Wed Feb 14 09:16:38 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG0731 is virtually identical to PG0884, another ISPg1 fragment, and similar to PG1662, PG1422, PG1267, PG1062, PG1050, PG0918, PG0740, PG0169, PG0499, PG0420, PG0732, PG0842, PG1159, PG1607, PG1919, PG1798, PG1755, PG1665, PG1230, PG1215, PG1184, PG1087, PG0839, PG0763, PG0756, PG0689, PG0686, PG1895, PG0044, PG1608, all ISPg1-related sequences. Specifically PG0731 and PG0884 correspond to most of the N-terminal domains of full-length ISPg1 elements such as PG1662.","Fri Feb 16 13:38:41 MST 2001","Wed Feb 14 09:16:38 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","Hanley,S.A., Aduse-Opoku,J. and Curtis,M.A.A 55-kilodalton immunodominant antigen of Porphyromonas gingivalisW50 has arisen via horizontal gene transferInfect. Immun. 67 (3), 1157-1171 (1999)Maley,J. and Roberts,I.S.Characterisation of IS1126 from Porphyromonas gingivalis W83: a new member of the IS4 family of insertion sequence elementsMicrobiol. Lett. 123 (1-2), 219-224 (1994)Shibata,Y., Hayakawa,M., Takiguchi,H., Shiroza,T. and Abiko,Y.Determination and characterization of the hemagglutinin-associatedshort motifs found in Porphyromonas gingivalis multiple geneproducts. J. Biol. Chem. 274 (8), 5012-5020 (1999)","","Wed Feb 14 09:16:38 MST 2001","","1","","7","" "PG0732","875589","874843","747","ATGGCATACCAATCCAAGAATACCGATGAGCATGTAACATTTGCAGACGCACTCCTTTCAAAGCGTTATCGCAAAGCACAAAACGACTTCCTCAATCAGGTTGACACGCTTATCGATTGGCGTCCGATCAGGACGCTGATCAACAAGAAATACACGAAGCGACAAAATGCCATCGGCGCCCCGGCTTATGACGTGATTCTCTTATTCAAGATGTTGCTTCCGAAGACATGGTACAACCTCAGTGATTGTGCTTTGGAGGAGCGCATCAATGATTCAATCACCTTTTCCCGATTCTTGGGGCTGAAGATGGAAGAGGTATCTCCCGACCACAGCGCCATCAGTCGATTTCGTTCGGCACTGACAGAGTTGGGTCTCATGGACAAACTATTGGCGCAGTTTAACAAACAACTTTCCCGCCATCACATTTCGGTCAGGGAAGGGGTGCTTGTCGATGCAAGCCTTGTGGAGACGCCACACAAACCCAACGGAAGCATTACGATTGAAGTCGCAGACGACAGGCAAGACAATCGGAGCGAGGCGGAAAAAGAGGCAGAGGAGGATTATCAAAAACAGGTTGTCCGTCAGCGTAAAGGGACGGATGAAGAAGCCCGTTGGGTTTACAAACAAAAGCGTTATCACTACGGATACAAAAAGCATTGTCCGGCCAATGTTCAAGGCATTGTTCAAAAGGAGACCATTGCACGGCATTTTTGCGACATATTTGCCTGCATTGCTTGCGTATATCAA","8.60","5.70","28945","MAYQSKNTDEHVTFADALLSKRYRKAQNDFLNQVDTLIDWRPIRTLINKKYTKRQNAIGAPAYDVILLFKMLLPKTWYNLSDCALEERINDSITFSRFLGLKMEEVSPDHSAISRFRSALTELGLMDKLLAQFNKQLSRHHISVREGVLVDASLVETPHKPNGSITIEVADDRQDNRSEAEKEAEEDYQKQVVRQRKGTDEEARWVYKQKRYHYGYKKHCPANVQGIVQKETIARHFCDIFACIACVYQ","875589 874843","Member of the IS5 family of elements. Corresponds to the N-terminal half of full-length elements such as PG1662.TIGR ID: PG0813","ISPg1 fragment (IS1106-related transposase fragment)","Cytoplasm","Several hits in gapped BLAST to previously sequenced IS1126-related transposases from P.gingivalis. Residues 31-219 are 31% similar to an IS1168 sequence from Bacteroides vulgatus (X71444).","
InterPro
IPR002559
Domain
Transposase, IS4-like
PF01609\"[147-220]TTransposase_11


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 157-230 are 95% similar to a (TRANSPOSASE PLASMID PROTEIN ELEMENT) protein domain (PD004652) which is seen in Q9ZAD0_PORGI.Residues 12-109 are 97% similar to a (TRANSPOSASE PROTEIN INSERTION ELEMENT) protein domain (PD007264) which is seen in Q9ZNB4_PORGI.Residues 110-156 are 97% similar to a (TRANSPOSASE ORF7 INSERTION SEQUENCE IS1126-LIKE GENE) protein domain (PD187846) which is seen in Q9ZA61_PORGI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Fri Feb 16 12:34:42 MST 2001","Mon Feb 12 16:03:10 MST 2001","Tue Jan 2 11:49:03 MST 2001","Tue Jan 2 11:44:21 MST 2001","","Mon Feb 12 16:03:10 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG0732 is partly similar to PG1919, PG1230, PG0686, PG1798, PG0756, PG1755, PG1662, PG1422, PG1267, PG1184, PG1087, PG1062, PG1050, PG0918, PG0763, PG0740, PG0169, PG0839, PG1099, PG0499, PG0420, PG1665, PG0689, PG1215, PG1895, PG0044, PG0883, PG0842, PG1608, PG1159, PG1231, PG0884, PG0731 and PG0730, all predicted ISPg1 transposases. Specifically residues 1-230 are nearly identical to the N-termianl half of full-length ISPg1 elements such as PG1662.","Fri Feb 16 12:34:26 MST 2001","Mon Feb 12 16:03:10 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","Hanley,S.A., Aduse-Opoku,J. and Curtis,M.A.A 55-kilodalton immunodominant antigen of Porphyromonas gingivalisW50 has arisen via horizontal gene transferInfect. Immun. 67 (3), 1157-1171 (1999)Maley,J. and Roberts,I.S.Characterisation of IS1126 from Porphyromonas gingivalis W83: a new member of the IS4 family of insertion sequence elementsMicrobiol. Lett. 123 (1-2), 219-224 (1994)Shibata,Y., Hayakawa,M., Takiguchi,H., Shiroza,T. and Abiko,Y.Determination and characterization of the hemagglutinin-associatedshort motifs found in Porphyromonas gingivalis multiple geneproducts. J. Biol. Chem. 274 (8), 5012-5020 (1999)","","Mon Feb 12 16:07:07 MST 2001","","1","","7","PG0813" "PG0733","876342","875998","345","ATGGATATACAAGTTATGAATACAGACGTTCACAATCCCGCTTTCATTCGGGCAGGACAATCCAATGATACTCGTAAGGAGGAACCCCAAGGTTCTCCCATGACACCTATGCTTCATATACGATGGTCTCGCATTATCGAATTGACTTTGCTTATCGCTATCATTGTCGATGCGGTCTATCTTCTCTCCAAGTTAGTCACACCCCAAGTCGTAACAGCCGTAACGGTCATTGCAGGTTTCCTGATACTGCGCTTTATAGTCCGGGTAATCCTAAAAGTGACATTTACGCTTCTGAGCTTTCTTTTCTGGCTGGCGATACTCTGCGCCATCCTGCTCTGTGTGCTT","8.70","2.37","12930","MDIQVMNTDVHNPAFIRAGQSNDTRKEEPQGSPMTPMLHIRWSRIIELTLLIAIIVDAVYLLSKLVTPQVVTAVTVIAGFLILRFIVRVILKVTFTLLSFLFWLAILCAILLCVL","876342 875998","TIGR ID: PG0814","hypothetical protein","Inner membrane, Cytoplasm","No significant hits found.","
noIPR
unintegrated
unintegrated
tmhmm\"[40-60]?\"[70-90]?\"[94-114]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Mon Jan 8 14:05:11 2001","Mon Jan 8 14:05:11 2001","Mon Jan 8 14:05:11 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540593","","","","","","1","","7","PG0814" "PG0734","876950","876480","471","ATGAAATCTACAGAAAAGAAAGAACTGTCCCACTTCCGTTTGAAGTTGGAAACTTACCTCAACGAGCATTTTCCCGAAATGTCGGGAAACAATCCATTCATTACAGCACGGTCGGATGAAGCGCTGACTGCCTACTGTGATGCCGTGGCACAAGGCTTCTCTCATCCCGAAGCCGAGAGTATGGCAAGCGAAGTCCTGTATCAAGGGCTGCATTTCTCCCGATACGATACCCTTGTTTCCGTCTTGGAGCGGGAGTTCGAGCAGGAACTGCCGTCACCTCTTCCCGAAAGACTCGCTCCGATACTGCTAAAAAACAAGGCGATACAAAGCGTATTTGCCAAGTATGACCTTACAGACGACTTTGAGGCAAGTCCGGAATACGAACATCTCTACACCGAACTGACAGGCACGATAGTCCTCCTTATCGAAAGCAATCACCTGCCTACAATAGGCGGAGGGAACGATACCGTA","4.50","-12.60","17711","MKSTEKKELSHFRLKLETYLNEHFPEMSGNNPFITARSDEALTAYCDAVAQGFSHPEAESMASEVLYQGLHFSRYDTLVSVLEREFEQELPSPLPERLAPILLKNKAIQSVFAKYDLTDDFEASPEYEHLYTELTGTIVLLIESNHLPTIGGGNDTV","876950 876480","TIGR ID: PG0816","hypothetical protein","Cytoplasm","No significant hits found.","
InterPro
IPR015082
Family
Domain of unknown function DUF1896
PF08989\"[2-147]TDUF1896


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Mon Jan 8 14:11:20 2001","Mon Jan 8 14:11:20 2001","Mon Jan 8 14:11:20 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 5-147 share 43% identity with PG1275, another hypothetical protein.","Tue Apr 3 16:33:07 MDT 2001","Tue Apr 3 16:33:07 MDT 2001","-100% similar to PDB:2APL Crystal structure of protein PG0816 from Porphyromonas gingivalis (E_value = 2.6E_87);-51% similar to PDB:2C5U T4 RNA LIGASE (RNL1) CRYSTAL STRUCTURE (E_value = 2.6E_87);-45% similar to PDB:1Q5Z Crystal Structure of the C-terminal Actin Binding Domain of Salmonella Invasion Protein A (SipA) (E_value = 2.6E_87);-54% similar to PDB:1BO5 CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN ESCHERICHIA COLI GLYCEROL KINASE AND THE ALLOSTERIC REGULATOR FRUCTOSE 1,6-BISPHOSPHATE. (E_value = 2.6E_87);-54% similar to PDB:1BOT CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN ESCHERICHIA COLI GLYCEROL KINASE AND THE ALLOSTERIC REGULATOR FRUCTOSE 1,6-BISPHOSPHATE. (E_value = 2.6E_87);","","","No significant hits to the Pfam 11.0 database","Tue Apr 3 16:33:07 MDT 2001","34540595","","","","","","1","","7","PG0816" "PG0734.1","877041","877298","258","ATGCTCAATCTTCTTGTTGGTGATACGAGCATATATTTGCGTAGTTTTAATATTCGTGTGACCGAGCATCTTACTCACGCTTTCCATCGGTACACCCTTGCTGAGCGACATCGTCGCAAAGGTGTGTCGGGCAAGGTGGTAAATACAAGCCTAAGCAAGCGTAAGAGGAACATAGGTGGAAATATGGTAACTGGTTGTGAATTAGTTGTTTTTCTATGTTCTGCGACAGATAGGGATAGGCAAAACAGTATGGGATAT","","","9781","MLNLLVGDTSIYLRSFNIRVTEHLTHAFHRYTLAERHRRKGVSGKVVNTSLSKRKRNIGGNMVTGCELVVFLCSATDRDRQNSMGY","","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No hit found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Mon Jan 8 14:22:08 2001","","Mon Jan 8 14:22:08 2001","Mon Jan 8 14:22:08 2001","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","7","" "PG0735","877467","878693","1227","ATGAAGATAGAGAAATTCAAGGTGTTGCTCTACCTGAAAAAGAGCAGACCCGACAAGTCGGGCAAAGCCCCGATCATGGGACGCATTACCGTCAATCGTTCGATGGTGCAGTTCAGTTGCAAACTCTCCTGTACTCCTGACTTATGGAATCCCCGTGAGAGTCGATTGAACGGTAAAAGCAATGAAGCAGTAGAGGTCAATGCCAAATTAGACAAGTTGTTGCTTTCCATTCATGCTGCATTCGACACCTTGGTGGAACGCAAGGCAGACTTTGATGCCGAAGCGGTCAAGAATCTGTTTCAGGGAAGTCTCGAAACACAGATGACCTTGCTGGCAATGACGGACATCGTCTGCGAGGAACTCCGTAAACGTATCGGGATAGACCGGGCAAAAGGAACATACCCCGCCTATTTCTACACCCGAAGAACCTTGGCGGAGTTCATTCAAAAGAAATTCCACTCCAAGGACATTGCCTTCGGTCAGCTGACCGAACAGTTCATTCACGACTATCAGTTTTTTGTCGTGGACGACAAAGGGCTTACCATAGAGACCAGCCGACACTACCTGGCCATCATCAAAAAAGTATGCCGTAAAGCCTACAAGGAAGGCTATGCCGATAAATGTTTTTTCGCTCATTTCAGTCTCCCCAAGCAAGAGGAGAAGACACCGAAAGCCCTAAGTCGGGAATCCTTTGAGAAAATCCGTGACTTGGTCATTCCCGAACATCGTAGCTCTCATATCTTGGCAAGAGATCTCTTCCTCTTTGCCTGCTATACGGGAACTTCCTATGCTGATGCGGTATCGGTTACACGAGACAATCTCTTCACCGATGATGAAGGAAGTCTATGGCTTAAATACCGTCGCAAGAAAAACGAACTTCAAGCCTGTGTCAAACTCCTGCCCGAAGCCCTTGAATTGATAGAGAAATACAACGACGATACCCGTCCGACACTCTTTCCAATGCTGTACCACCCCAATCTACGTCGCCTGATGAAATGCCTTGCGGTTCTCGCCGACATAAAGGAAGACCTGACCTACCATGCCGGAAGGCATTCCTTCGCTTCATTGATTACTCTGGAAGCAGGAGTCCCCATAGAAACTATCTGTAAGATGCTGGGACATTCGAACCTGCAAACGACTCAGAGATACGCGAAGGTTACCCCAAAGAAACTCTTCGAGGATATGGACAAATACATCGAAGCGACAAAGGATTTGAAACTCATATTA","9.60","15.25","47243","MKIEKFKVLLYLKKSRPDKSGKAPIMGRITVNRSMVQFSCKLSCTPDLWNPRESRLNGKSNEAVEVNAKLDKLLLSIHAAFDTLVERKADFDAEAVKNLFQGSLETQMTLLAMTDIVCEELRKRIGIDRAKGTYPAYFYTRRTLAEFIQKKFHSKDIAFGQLTEQFIHDYQFFVVDDKGLTIETSRHYLAIIKKVCRKAYKEGYADKCFFAHFSLPKQEEKTPKALSRESFEKIRDLVIPEHRSSHILARDLFLFACYTGTSYADAVSVTRDNLFTDDEGSLWLKYRRKKNELQACVKLLPEALELIEKYNDDTRPTLFPMLYHPNLRRLMKCLAVLADIKEDLTYHAGRHSFASLITLEAGVPIETICKMLGHSNLQTTQRYAKVTPKKLFEDMDKYIEATKDLKLIL","877446 878693","Vedantam et al. have studied a mobilizable transposon in B.fragilis, Tn5520, which is capable of inserting into and mobilizing other, nontransferable plasmids and are implicated in the dissemination of antibiotic resistance. The transposon has two open reading frames, one of which is a recombinase-integrase enzyme which shows similarity to PG0735. The authors have shown that Tn5520 mobilizes plasmids in both B.fragilis and E.coli, PubMed: 10198023.TIGR ID: PG0819","Tn5520-like integrase (transfer factor) (transposase)","Cytoplasm","Gapped BLAST finds numerous similarities including 32% similarity to a transposase in Bacteroides fragilis (gb|AAC80279) and weaker similarity to integrase-like proteins in B.fragilis (gb|AAG17464 and gb|AAF74726), Salmonella enterica (gb|AAG03003), Bacillus halodurans (dbj|BAB05248) and B.subtilis (sp|P46352|RIPX_BACSU).","
InterPro
IPR002104
Domain
Integrase, catalytic core, phage
PF00589\"[283-393]TPhage_integrase
InterPro
IPR010998
Domain
Integrase, Lamba-type, N-terminal
SSF47823\"[113-227]TL_intgrse_like_N
InterPro
IPR011010
Domain
DNA breaking-rejoining enzyme, catalytic core
SSF56349\"[219-400]TDNA_brk_join_enz
InterPro
IPR013762
Domain
Integrase-like, catalytic core, phage
G3DSA:1.10.443.10\"[224-396]TPhage_intgr_like


","BeTs to 12 clades of COG0582COG name: IntegraseFunctional Class: LThe phylogenetic pattern of COG0582 is aMtK-qvcEBRHUJ---LINXNumber of proteins in this genome belonging to this COG is 8","***** PF00589 (\"Phage\" integrase family) with a combined E-value of 9.4e-08. PF00589B 346-355 PF00589C 372-383","Residues 329-391 are 44% similar to a (INTEGRASE DNA PROTEIN RECOMBINATION INTEGRATION PLASMID) protein domain (PD000437) which is seen in Q9ZI85_BACFR.Residues 6-310 are 31% similar to a (TRANSPOSASE) protein domain (PD214991) which is seen in Q9ZI85_BACFR.","","Thu Jun 14 13:41:26 MDT 2001","","Thu Jun 14 13:41:26 MDT 2001","Thu Jun 14 13:41:26 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:41:26 MDT 2001","Thu Jun 14 13:41:26 MDT 2001","","Mon Jun 18 08:26:28 MDT 2001","Wed Mar 14 13:44:21 MST 2001","Mon Jan 8 14:49:07 2001","Mon Jan 8 14:23:36 2001","Mon Jun 18 08:29:04 MDT 2001","Mon Jun 18 08:26:28 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG0735 is identical to PG1272, a Tn5520-like integrase and shows 23%-39% similarity to PG0994, PG1271, PG0736, PG0749, PG1258, PG0757, PG0750, PG0784, and PG1510, several of which are predicted integrases or transposases.","Mon Jun 18 08:26:28 MDT 2001","Mon Feb 12 14:00:20 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 226 to 393 (E-value = 1.3e-08) place PG0735 in the Phage_integrase family which is described as Phage integrase family (PF00589)","Mon Jun 18 08:29:04 MDT 2001","34540596","","","Vedantam G, Novicki TJ, Hecht DW, Bacteroides fragilis transfer factor Tn5520: the smallest bacterial mobilizable transposon containing single integrase and mobilization genes that function in Escherichia coli, J Bacteriol 1999 Apr;181(8):2564-71, PubMed: 10198023.","","Mon Jan 8 14:43:05 2001","1","","7","PG0819" "PG0736","878722","879921","1200","ATGCGTAGCACATTTTCATTATTACTCTATATCAATCGTAACAAGGTACGTGTGGACGGTACGACTTCTGTCCTTTGCCGAATCTCCATTGACGGAAAGAACACCGTCATTACCACGGGCATTTCCTGCAAACCCCAACAATGGAACGCCAAAAATGCAGAGACCTCAGATGCACGGACAAACAACCGTCTGAAGAAATTCCGCAGTGATGCGGAACGGCTTTATGAGGATCTCCTTAAGAGATATGGTGTTGTCAGTGCGGAACTGTTGAAAAATGAAATTGCGGGACATGTCGTAGTTCCCATTCATTTACTCCAGATGGGAGAAAGGGAGCGAGAACGTCTTGCAGTAAGAGCTAACGAAATAGGCTCAAACTCCACATACAGAAGTTCAAGATATTACCAAAGTTATATTCGAGAGTTTTTGGAGTCAAAAGGCATGAGCGACATTGCTTTCTTGGACATCACCGAGGAGTTCGGACGGGAATACAAGGTTTATCTGAAACGATACAAAAACTTCGGAGCATCGCAGACCAACCATTGCCTTTGTTGGCTGAACCGATTGGTTTACCTTGCCGTTGACCATGAGATTATCCGAGCCAATCCATTAGAAGAAGTCGAATATGAGAAGAAGCCCCCTGCCAAGCGTATGCACATCAGCAAAGCGGAACTGAAACAGTTGTTGGAACTTAAATTGCCACAGAACGACCCGTTGAAAGAACTGGCTCGACGGACTTTCATCTTCTCCTGTTTTACGGGGCTTGCCTATGTTGATACGCAATTGCTATATCCGCACCACATAGGAAAGACGGCCGAGGGACGGCGTTATATACGGATTAACCGCAGGAAGACGAAAGTAGAATCATTCATTCCCCTGCATCCGATAGCCGAGCAGATTATCAATCTATACAACACGACAGATGACACACAACCCGTCTTCCCTTTGCCAAGCAGGGATATGATGTGGTTTGAAATACATGAACTGGGTGTCATCATCGGACGCAAGGAGAACCTGTCCTACCATCAAGCAAGGCATAGCTTCGGATCGTTCTTAATCTCGGAAGGTATATGTACGGAAAGCATTGCCAAGATGATGGGACATGCTTCCATTACCAGCACGCAGAACTATGCGAAGATTTCGGAGAAGAAAATCTCAGAGGATATGGACAGGCTGATGGAAAGACGAAAGAACAATGAATAC","10.00","15.64","46561","MRSTFSLLLYINRNKVRVDGTTSVLCRISIDGKNTVITTGISCKPQQWNAKNAETSDARTNNRLKKFRSDAERLYEDLLKRYGVVSAELLKNEIAGHVVVPIHLLQMGERERERLAVRANEIGSNSTYRSSRYYQSYIREFLESKGMSDIAFLDITEEFGREYKVYLKRYKNFGASQTNHCLCWLNRLVYLAVDHEIIRANPLEEVEYEKKPPAKRMHISKAELKQLLELKLPQNDPLKELARRTFIFSCFTGLAYVDTQLLYPHHIGKTAEGRRYIRINRRKTKVESFIPLHPIAEQIINLYNTTDDTQPVFPLPSRDMMWFEIHELGVIIGRKENLSYHQARHSFGSFLISEGICTESIAKMMGHASITSTQNYAKISEKKISEDMDRLMERRKNNEY","878722 879921","Vedantam et al. have studied a mobilizable transposon in B.fragilis, Tn5520, which is capable of inserting into and mobilizing other, nontransferable plasmids and are implicated in the dissemination of antibiotic resistance. The transposon has two open reading frames, one of which is a recombinase-integrase enzyme which shows similarity to PG0735. The authors have shown that Tn5520 mobilizes plasmids in both B.fragilis and E.coli, PubMed: 10198023.TIGR ID: PG0820","Tn5520-like integrase (transfer factor)","Cytoplasm","Gapped BLAST finds numerous similarities including 28% similarity to a transposase in Bacteroides fragilis (gb|AAC80279) and weaker similarity to integrase-like proteins in B.fragilis (gb|AAG17464 and gb|AAF74726), Salmonella enterica (gb|AAG03003), Bacillus halodurans (dbj|BAB05248) and B.subtilis (sp|P46352|RIPX_BACSU).","
InterPro
IPR002104
Domain
Integrase, catalytic core, phage
PF00589\"[341-386]TPhage_integrase
InterPro
IPR010998
Domain
Integrase, Lamba-type, N-terminal
SSF47823\"[124-206]TL_intgrse_like_N
InterPro
IPR011010
Domain
DNA breaking-rejoining enzyme, catalytic core
SSF56349\"[215-391]TDNA_brk_join_enz
InterPro
IPR013762
Domain
Integrase-like, catalytic core, phage
G3DSA:1.10.443.10\"[218-389]TPhage_intgr_like


","BeTs to 12 clades of COG0582COG name: IntegraseFunctional Class: LThe phylogenetic pattern of COG0582 is aMtK-qvcEBRHUJ---LINXNumber of proteins in this genome belonging to this COG is 8","No significant hit to the Blocks database.","Residues 1-317 are 25% similar to a (TRANSPOSASE) protein domain (PD214991) which is seen in Q9ZI85_BACFR.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Mon Jan 8 16:01:30 2001","Mon Jan 8 16:01:30 2001","Mon Jan 8 16:01:30 2001","Mon Jan 8 16:01:30 2001","","Tue Apr 3 16:47:18 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG0736 is essentially identical to PG1271, a Tn5520-like integrase (transfer factor). Residues 1-400 are 99% similar to PG1271. Strong similarites are seen to:PG0735, Tn5520-like integrase (transfer factor) (transposase),PG1272, Tn5520-like integrase (transfer factor),PG0994, transposase andPG1258, transposase.Weaker similarities include four other genes with integrase-transposase activity: PG0749, PG0750, PG0784, and PG1510.","Tue Apr 3 16:47:18 MDT 2001","Tue Apr 3 16:47:18 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 219 to 386 (E-value = 2.3e-05) place PG0736 in the Phage_integrase family which is described as Phage integrase family (PF00589)","Tue Apr 3 16:47:18 MDT 2001","34540597","","","Vedantam G, Novicki TJ, Hecht DW, Bacteroides fragilis transfer factor Tn5520: the smallest bacterial mobilizable transposon containing single integrase and mobilization genes that function in Escherichia coli, J Bacteriol 1999 Apr;181(8):2564-71, PubMed: 10198023.","","Mon Jan 8 16:01:30 2001","1","","7","PG0820" "PG0737","879931","880290","360","ATGAAAAGAGGAACTATAACCATAGATGGGAAGGGAAATGTACATATCCCGTCAACTCCTGTTTGGATGTCGGCTTGTGAGATAGCCGACCTGTTCGGAGCCTTCTCTGGCAAGGTGAGCGTGCAAATCAAAACGATATTCAAGGAGGGTCTCCTGATGGAAACGGAAGCAATGAGAACAATCCAATCTGGACAAGGATTTATTGATTTGTATGGTATTGAAATGATAACGATGCTATCGTTTCGTATTGCCACGCCACAGGCAAAGACTTTGCGGAGGTGGATAATCGACAGACTTTCGGGAAAGAACTCTTCATCTTCTCCTTTGATTGTTTGCTATACCTTGGGCAAGCGATATAAT","10.40","6.13","13319","MKRGTITIDGKGNVHIPSTPVWMSACEIADLFGAFSGKVSVQIKTIFKEGLLMETEAMRTIQSGQGFIDLYGIEMITMLSFRIATPQAKTLRRWIIDRLSGKNSSSSPLIVCYTLGKRYN","879931 880290","TIGR ID: PG0821","hypothetical protein","Cytoplasm","No significant hits.","
noIPR
unintegrated
unintegrated
PS51257\"[1-26]TPROKAR_LIPOPROTEIN


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Mon Jan 8 16:04:58 2001","Mon Jan 8 16:04:58 2001","Mon Jan 8 16:04:58 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","PG0737 is essentially identical to PG1270, another hypothetical protein. Residues 1-119 are 99% similar to PG1270. Weaker similarities are seen to PG0993, a hypothetical protein.","Tue Apr 3 16:50:42 MDT 2001","Tue Apr 3 16:50:42 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Apr 3 16:50:42 MDT 2001","34540598","","","","","","1","","7","PG0821" "PG0738","880827","880384","444","ATGGAAAAGAAAATCGAAAAAGTTCGTCAATTTTACACCGCTTTGGCACAGGGTGATTTTGAAACAGTGGGAGCTTTGCTCTCTGATGATTTGGTATGGCATCAGCCGGGACAAGGCGCTTTGTCTGGTACTTACAATGGCAAACAAAATGTCTTTGCCCATTTGGAAAGAATGGCTCAACTAAGTAATGGTACTTTCGCCATTGATCAAGTGGATTATGTTACAGACAATGGCAACTTGGTTGCAGCAGCAATTGCATTTGCGGTATCAGCCAACGGACATTCAATAGAAATGAAAGGAGTAGATCTCTTTAACTTTGAGAATGGTTTTATAAAGAAAGTCTGGCTCTTCTCTGAGCGAATTGAAGAGGAArrmCCGTTTTTGGACGGCATTGGCACAAGGTTGTTAATGAAAGAGAATCCTTTTGAGATTGCCATTATACGC","4.70","-6.28","36510","MEKKIEKVRQFYTALAQGDFETVGALLSDDLVWHQPGQGALSGTYNGKQNVFAHLERMAQLSNGTFAIDQVDYVTDNGNLVAAAIAFAVSANGHSIEMKGVDLFNFENGFIKKVWLFSERIEEEXPFLDGIGTRLLMKENPFEIAIIR","880827 880384","PG0738 is part of a long 9927 bp region containing 9 orfs whichis repeated with >99% similarity (9915 identical out of 9927) on the opposite strand. PG0738 to PG0744 have paralogs PG1269 to PG1263.TIGR ID: PG0822","hypothetical protein","Cytoplasm","No significant hits in GenBank with gapped BLAST.","
InterPro
IPR009959
Family
Protein of unknown function DUF1486
PF07366\"[6-127]TSnoaL
noIPR
unintegrated
unintegrated
G3DSA:3.10.450.50\"[2-129]Tno description


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","Tue Feb 6 13:22:56 MST 2001","Tue Feb 6 13:22:56 MST 2001","","Thu Jan 18 16:22:42 2001","Mon Jan 8 17:19:43 2001","Tue Feb 13 17:45:50 MST 2001","Mon Jan 8 16:06:34 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","PG0738 is essentially identical to PG1269.","Tue Apr 3 16:52:30 MDT 2001","Tue Feb 13 17:43:12 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Apr 3 16:52:30 MDT 2001","34540599","","","","","","1","","7","PG0822" "PG0739","880960","881271","312","ATGGAGAGAAAAATTTCAGATGAAGAATGTCCAGTAAGAAAATCAATGCAGATTTTTGCCGGTAAATGGACATTGCTTATTATCTTTCAAATCAACCGCAGGATAATCCGTTACGGAGAACTCAAACGTGCCATTCCCGGCATTAGCGAGAAAATGCTTATCGATGAATTAAAATTCCTGTGCGGTAAAGGACTAATTAAGAAGAAACAATATCCCGAAGTTCCTCCCAGAGTGGAGTACTCCCTTACGCCCTTGGGTGAGAAAGTGTTGCCGATTATCGACGAGATAGCCAAGTTCGGTATGGAGAATTTA","10.00","4.90","12075","MERKISDEECPVRKSMQIFAGKWTLLIIFQINRRIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPLGEKVLPIIDEIAKFGMENL","880960 881271","PG0739 is part of a long 9927 bp region containing 9 orfs whichis repeated with >99% similarity (9915 identical out of 9927) on the opposite strand. PG0738 to PG0744 have paralogs PG1269 to PG1263.TIGR ID: PG0823","conserved hypothetical protein (possible transcriptional regulator)","Cytoplasm","Numerous significant hits using gapped BLAST to conserved hypothetical proteins including 45% similarity to gb|AAC44494 in Butyrivibrio fibrisolvens, 37-41% similarity to dbj|BAB04728, sp|Q9Z9W1|YDZF_BACHD and dbj|BAB04456 in Bacillus halodurans.","
InterPro
IPR002577
Domain
Helix-turn-helix, HxlR type
PD004032\"[37-74]TDUF24
PF01638\"[18-104]TDUF24
PS51118\"[10-104]THTH_HXLR
noIPR
unintegrated
unintegrated
SSF46785\"[7-104]TSSF46785


","BeTs to 5 clades of COG1733COG name: Predicted transcriptional regulatorsFunctional Class: KThe phylogenetic pattern of COG1733 is Amt----ceBR----------Number of proteins in this genome belonging to this COG is 2","***** PF01638 (Protein of unknown function) with a combined E-value of 1.6e-25. PF01638A 33-59 PF01638B 60-99","Residues 18-102 are 47% similar to a (PROTEIN INTERGENIC REGION CSPC-NAP) protein domain (PD004032) which is seen in P70885_BUTFI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Thu Jan 18 16:22:00 2001","Mon Jan 8 17:35:05 2001","Mon Jan 8 17:33:52 2001","Mon Jan 8 17:22:41 2001","Fri Mar 23 12:21:12 MST 2001","Fri Mar 23 12:21:12 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG0739 is identical to PG1268, a predicted conserved hypothetical protein (possible transcriptional regulator).","Fri Mar 23 12:21:12 MST 2001","Fri Mar 23 12:21:12 MST 2001","-100% similar to PDB:2FSW Crystal Structure of the Putative Transcriptional Regualator, MarR family from Porphyromonas gingivalis W83 (E_value = 1.6E_55);-58% similar to PDB:1YYV Putative transcriptional regulator ytfH from Salmonella typhimurium (E_value = 6.0E_15);-61% similar to PDB:1Z7U Crystal Structure of the Putitive Transcriptional Regulator of MarR Family from Enterococcus faecalis V583 (E_value = 3.7E_12);-58% similar to PDB:2HZT Crystal Structure of a putative HTH-type transcriptional regulator ytcD (E_value = 4.8E_12);","","","Residues 18 to 104 (E-value = 2.7e-27) place PG0739 in the DUF24 family which is described as Transcriptional regulator (PF01638)","Fri Mar 23 12:21:12 MST 2001","34540600","","","","","","1","","7","PG0823" "PG0739.1","881312","881989","678","TTGAAGTTACAATTTATCAGTCAATATGATTCTAAGTTAAGATATATATGTATGATTGAATTAGAAAACATCAAAGAAAGGAAGAGAAGACTTGCTTTTGAAAAAGCTCACGAGATTAGGAAGTTTGAAATTGAACTTTATTGGAAACGAACTACTTATTTTTGGGCATTTATAGCCTTTTCCTTTGGAGCGTATATTGCTATTGTATCTTCCGAAAGCAAAGAGTTTACCAATAGAGAAAACTACGCTTTCGTTATAACATGTATTGGCTTTATCTTTTCTCTAAGTTGGTATCTCGTAAATAGAGCCAGCAAGCATTGGCAAACCAATTGGGAGGTAATTATAGATGATTTAGAAGATGAATTCACAGGAGATTTGATGAAAAGACATATAAAGAATAATAACAAATGGTATGAATTGACATTATCTTATAGATATTCTGTTTCAAGGATCAACCAGATTGTAAGCCTCTTTATTACCATTGTATGGGTTATCTTAATGTGTTTTTCTGGTTATCAAATTCTCAGTATTTCCACATTCTCTTTATCAGGAAACTGGATGTTTCCTATATTCTTTATTGTCACAATCGCTTTCTTTGTTATTCTTGTAAAATGGGGAAAGTCTGAAAAGCCAAAGGAAAAGGTTACTCTTAATCGAAAATCGTCCAAAGAATGTTGT","","","27131","LKLQFISQYDSKLRYICMIELENIKERKRRLAFEKAHEIRKFEIELYWKRTTYFWAFIAFSFGAYIAIVSSESKEFTNRENYAFVITCIGFIFSLSWYLVNRASKHWQTNWEVIIDDLEDEFTGDLMKRHIKNNNKWYELTLSYRYSVSRINQIVSLFITIVWVILMCFSGYQILSISTFSLSGNWMFPIFFIVTIAFFVILVKWGKSEKPKEKVTLNRKSSKECC","","PG0739.1 is part of a long 9927 bp region containing 9 orfs whichis repeated with >99% similarity (9915 identical out of 9927) on the opposite strand. PG0738 to PG0744 have paralogs PG1269 to PG1263.TIGR ID: PG0824","conserved hypothetical protein","Inner membrane, Cytoplasm","Gapped BLAST finds one significant hit; residues 8-170 are 42% similar to a hypothetical protein in Vibrio cholerae, gb|AAF96387.","
noIPR
unintegrated
unintegrated
tmhmm\"[51-71]?\"[81-101]?\"[154-176]?\"[186-206]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","Thu Jan 18 16:21:26 2001","Mon Jan 8 17:40:49 2001","Mon Jan 8 17:40:49 2001","Mon Jan 8 17:40:49 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Paralogs include PG1267.1 with 100% similarity.","Thu Jan 18 14:17:27 2001","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540601","","","","","","1","","7","PG0824" "PG0740","883240","882158","1083","ATGGCATACCAATCCAAGAATACCGATGAGCATGTAACATTTGCAGACGCACTCCTTTCAAAGCGTTATCGCAAAGCACAAAACGACTTCCTCAATCAGGTTGACAGGCTTATCGATTGGCGTCCGATCAGGACGCTGATCAACAAGAAATACACCAAGCGACAAAATGCCATCGGCGCCCCGGCTTATGACGTGATTCTCTTATTCAAGATGTTGCTTTTGGAGACATGGTACAACCTCAGTGATTGTGCTTTGGAGGAGCGCATCAATGATTCAATCACCTTTTCCCGATTCTTGGGGCTGAAGATGGAAGAGGTTTCTCCCGACCACAGTACCATCAGTCGATTTCGTTCGGCACTGACAGAGTTGGGTCTCATGGACAAACTATTGGCGCAGTTTAACAAACAACTTTCCCGCCATCACATTTCGGTCAGGGAAGGGGTGCTTGTCGATGCAAGCCTTGTGGAGACGCCGCATAAACCCAACGGAAGCATTACGATTGAAGTCGCAGACGACAGAGAAGACAATCGGAGCGAGGAGGAAAAAGAGGCAGAGGAGGATTATCAAAAACAGGTTGTCCGTCAGCGTAAAGGGACGGATGAAGAAGCCCGTTGGGTTTACAAACAAAAGCGTTATCACTACGGATACAAAAAGCATTGTCTGACCAATGTTCAAGGCATTGTTCAAAAGGTGATAACGACTGCAGCGAACCGCAGTGACACGAAGGAGTTTATTGCGCTATTGCAGGGTGCAAACATACCTCAAGGCTCAGCCGTCTTGGCGGACAAAGGATATGCTTGCGGGGAAAATCGTTCCTACCTGCAAACCCATCACCTTCAAGACGGCATCATGCACAAGGCACAACGCAACAGGGCATTGACCGAGGAAGAGAAGCAACGAAACAAAGCAATCAGTCGGATACGGAGCACCATCGAACGCACCTTTGGCAGTATTCGCCGGTGGTTTCATGGCGGACGATGTCGATACCGGGGACTTGCCAAGACCCATACTCAAAACATTCTTGAAAGCATCGCCTTTAATTTATACAGAACCCCGGGGATAATTATGTCCTCATTTGTAGGA","10.20","14.72","41742","MAYQSKNTDEHVTFADALLSKRYRKAQNDFLNQVDRLIDWRPIRTLINKKYTKRQNAIGAPAYDVILLFKMLLLETWYNLSDCALEERINDSITFSRFLGLKMEEVSPDHSTISRFRSALTELGLMDKLLAQFNKQLSRHHISVREGVLVDASLVETPHKPNGSITIEVADDREDNRSEEEKEAEEDYQKQVVRQRKGTDEEARWVYKQKRYHYGYKKHCLTNVQGIVQKVITTAANRSDTKEFIALLQGANIPQGSAVLADKGYACGENRSYLQTHHLQDGIMHKAQRNRALTEEEKQRNKAISRIRSTIERTFGSIRRWFHGGRCRYRGLAKTHTQNILESIAFNLYRTPGIIMSSFVG","883240 882158","PG0740 is part of a long 9927 bp region containing 9 orfs whichis repeated with >99% similarity (9915 identical out of 9927) on the opposite strand. PG0738 to PG0744 have paralogs PG1269 to PG1263.Member of the IS5 family of elements. A full-length ISPg1 element.TIGR ID: PG0825","ISPg1 transposase (IS1106-related transposase)","Cytoplasm","PG0740 is approximately equivalent to the previously sequenced AJ130872 in GenBANK. See also AB015879. Residues 31-350 are 34% similar to the IS1106 transposase of N.meningitidis (AE002488).","
InterPro
IPR002559
Domain
Transposase, IS4-like
PF01609\"[147-348]TTransposase_11


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 157-302 are 87% similar to a (TRANSPOSASE PLASMID PROTEIN ELEMENT) protein domain (PD004652) which is seen in Q9ZA61_PORGI.Residues 12-109 are identical to a (TRANSPOSASE PROTEIN INSERTION ELEMENT) protein domain (PD007264) which is seen in Q9ZAD0_PORGI.Residues 303-361 are identical to a (TRANSPOSASE ORF7 INSERTION SEQUENCE IS1126-LIKE GENE) protein domain (PD187845) which is seen in Q9ZA61_PORGI.Residues 110-156 are identical to a (TRANSPOSASE ORF7 INSERTION SEQUENCE IS1126-LIKE GENE) protein domain (PD187846) which is seen in Q9ZA61_PORGI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Fri Feb 16 11:20:09 MST 2001","Mon Feb 12 15:52:15 MST 2001","Wed Jan 3 12:56:16 MST 2001","Wed Jan 3 12:05:35 2001","","Mon Feb 12 15:52:15 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG0740 is virtually identical to PG1267, PG0169, PG1050, PG1062, PG1662, PG0918, PG1422, PG0420, PG0499, and PG1099.Partial similarities exist to PG0732, PG0842, PG1607, PG0731, PG0884, PG1184, PG1087, PG0763, PG1755, PG0686, PG0756, PG1798, PG1230, PG1919, PG0044, PG0689, PG1215, PG1665, PG0839, PG1895, PG0883, PG11231, PG0730, PG1159 and PG1608. ","Fri Feb 16 11:20:09 MST 2001","Mon Feb 12 15:52:15 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 147 to 348 (E-value = 2.2e-40) place PG0740 in the Transposase_11 family which is described as Transposase DDE domain (PF01609)","","34540602","","Hanley,S.A., Aduse-Opoku,J. and Curtis,M.A.A 55-kilodalton immunodominant antigen of Porphyromonas gingivalisW50 has arisen via horizontal gene transferInfect. Immun. 67 (3), 1157-1171 (1999)Maley,J. and Roberts,I.S.Characterisation of IS1126 from Porphyromonas gingivalis W83: a new member of the IS4 family of insertion sequence elementsMicrobiol. Lett. 123 (1-2), 219-224 (1994)Shibata,Y., Hayakawa,M., Takiguchi,H., Shiroza,T. and Abiko,Y.Determination and characterization of the hemagglutinin-associatedshort motifs found in Porphyromonas gingivalis multiple geneproducts. J. Biol. Chem. 274 (8), 5012-5020 (1999)","Knight,A.I., Ni,H., Cartwright,K.A. and McFadden,J.J.Identification and characterization of a novel insertion sequence, IS1106, downstream of the porA gene in B15 Neisseria meningitidis.Mol. Microbiol. 6 (11), 1565-1573 (1992)","Mon Feb 12 15:52:15 MST 2001","Mon Feb 12 15:52:15 MST 2001","1","","7","PG0825" "PG0741","883363","884208","846","ATGTCCCATTTGCCAATCCATAGAAGTTCGCAACTCACCGATTTTGGAGTCTATCTGAAGACAATTGTATCTAAAACATCTGCATCTTCAGACAGATATGCCTTTTCTCATACCGACGACTATTATTTCTTCGGCTTCATAGAGGGGGGGCAATGTCGTCTGAATATTGATTTCAAGGAATGTACTTTCGAAAAGGATAGTCTGGTTATCATTCGTCCGGGACAGGTACATCGCATCATTGATGCTTACAATCTTTCGGCAAACTTCCTTATTATTGACTCGGTATTGGTAAATAAGGAGGAGAAACGACTATTGGAGCGGCATGGTCGTCAAAAAATCCAAATATTTGACATATCTGAACAGAAACAGTTATTGTCGCTTCTTGCTCACAGACTTAGCTGCACAGAAAATTCATTTTCAAAACCGATCATTCAACGATTAACAACCGTAATAGTGGGGTTGGTTGTAAAGGATGTTGCAGGTGCGACAGAGACTCAATCCGAATTGCAGGGGAATATAAACAGATATAAGGAAATCGCGTGGGATTTTCGGGAATTGCTCGAAAGCAATATCCGAACGAACCGTGCTCCTTCGTTCTATGCCGAACGTTTGAATATAACAGTTGCCTACCTGAATGAAGCGATAAATGCTGTTTGGGGAACGAGTGTAAGTCGGAATATTCAGGATGAAATCATCTTGCAAGCTAAGCGACAATTAGTCTATACAACAACCTCTGTAAAAGAGATAGCACAAGGTTTGGGATTTGACGATTACTCCTACTTCACACGACTATTTACCAAGGTTGCAGGAGTTTCTCCAACGCTTTTCAGAAAGAATTACCACGAA","8.40","3.55","32350","MSHLPIHRSSQLTDFGVYLKTIVSKTSASSDRYAFSHTDDYYFFGFIEGGQCRLNIDFKECTFEKDSLVIIRPGQVHRIIDAYNLSANFLIIDSVLVNKEEKRLLERHGRQKIQIFDISEQKQLLSLLAHRLSCTENSFSKPIIQRLTTVIVGLVVKDVAGATETQSELQGNINRYKEIAWDFRELLESNIRTNRAPSFYAERLNITVAYLNEAINAVWGTSVSRNIQDEIILQAKRQLVYTTTSVKEIAQGLGFDDYSYFTRLFTKVAGVSPTLFRKNYHE","883333 884208","PG0741 is part of a long 9927 bp region containing 9 orfs whichis repeated with >99% similarity (9915 identical out of 9927) on the opposite strand. PG0738 to PG0744 have paralogs PG1269 to PG1263.TIGR ID: PG0826","conserved hypothetical protein with DNA-binding domain","Cytoplasm, Outer membrane","Significant hits include a putative transcription regulator from P.aeruginosa: residues 46-278 are 25% similar to 55-286 of gb|AAG03637, residues 46-277 are 24% similar to residues 52-282 of PobR in Pseudomonas sp. (gb|AAG17456) and residues 46-278 are 21% similar to residues 55-287 of a PobR protein in P.putida (emb|CAB64665).","
InterPro
IPR000005
Domain
Helix-turn-helix, AraC type
PR00032\"[246-261]T\"[261-277]THTHARAC
PF00165\"[234-278]THTH_AraC
SM00342\"[194-277]THTH_ARAC
PS01124\"[181-279]THTH_ARAC_FAMILY_2
InterPro
IPR003313
Domain
AraC protein, arabinose-binding/dimerisation
SSF51215\"[1-92]TAraC_binding
InterPro
IPR009057
Domain
Homeodomain-like
SSF46689\"[230-280]THomeodomain_like
InterPro
IPR012287
Domain
Homeodomain-related
G3DSA:1.10.10.60\"[230-278]THomeodomain-rel
noIPR
unintegrated
unintegrated
PTHR11019\"[201-279]TPTHR11019
PTHR11019:SF11\"[201-279]TPTHR11019:SF11


","BeTs to 4 clades of COG2207COG name: AraC-type DNA-binding domain-containing proteinsFunctional Class: KThe phylogenetic pattern of COG2207 is ------vCEBRH---------Number of proteins in this genome belonging to this COG is 4","***** IPB000005 (AraC type helix-turn-helix domain) with a combined E-value of 2.5e-09. IPB000005 246-277","Residues 210-278 are 43% similar to a (PROTEIN TRANSCRIPTION REGULATION DNA-BINDING) protein domain (PD000394) which is seen in Q51543_PSEAE.","","Thu Jun 14 13:42:08 MDT 2001","","Thu Jun 14 13:42:08 MDT 2001","Thu Jun 14 13:42:08 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:42:08 MDT 2001","Thu Jun 14 13:42:08 MDT 2001","","Mon Jun 18 08:31:35 MDT 2001","Thu Jan 18 14:45:21 2001","Mon Jun 18 08:36:37 MDT 2001","Tue Jan 9 10:40:42 MST 2001","Mon Jun 18 08:31:35 MDT 2001","Mon Jun 18 08:31:35 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG741 is identical to PG1266, a probable transcriptonal regulator Ps pobR (conserved hypothetical protein with DNA-binding domain).","Fri Mar 23 12:46:03 MST 2001","Fri Mar 23 12:46:03 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 234 to 278 (E-value = 1e-07) place PG0741 in the HTH_AraC family which is described as Bacterial regulatory helix-turn-helix proteins, araC family (PF00165)","Mon Jun 18 08:31:35 MDT 2001","34540603","","","","","","1","","7","PG0826" "PG0742","884308","885663","1356","ATGARCAACGCTGTGAATATTTTGCAAGAAGGAAGTATGATGAAATCCCTGACAAAGTTGGGGATACCTATTGTCATCGCAATGCTGATTATGGCAATATACAATGTGGTAGATACTTTCTGGGTTGCACGTTTGGGAACTCTTCCTGTCGCTGCCGTATCAGTTGTTTTCCCTTTATCGTTGGTGTTTCTTGGGATAGGGCTGATGTTTGGTGTTGGGGGCGGAGTGTATATATCTCGCTTATTGGGTGCGAAGCAAATTGTCAAGGCTGGTCAGGTAGCTTCCGTCTCAGTGATCACCTCTGTGATTTTAGCTGCTCTCATTGCCCTTGTATGCAATGCGTTTCTACCAGAAATTCTGCTTTTCATGGGGGCAAACGAGGAGATGATGAGCTTAGCGGAAGCATATGGCAGACTGTTCATCGTTAGTTGTGTCATAGGAACGTTGAATGTGTCGATGTCCAATATTATAGTTTCTCAGGGGGCTTCAAAAACGTCTGCATCGGCAATGATAATAGGTTCTGTTATAAATGTCGCATTGGATCCTCTATTTATCTATGCTTTCGGCTGGGGTGTGAAAGGTGCTGCGTGGGCAACCATTCTTTCAAGAATCATTACAACAATCATTTACACCTGCTTCTTTATGAAAGCAGAGGTGAAAGTTTCGTTTGCCTTGTTCGTCCCAACGATAAGAATGTACTTGGACATCATAAAGATAGGTATTTCAATGCTCTGTTTGCAACTCCTCCAAACACTTTCGATTAGTTTATTGCAGAGAGCTGCCGTAAAATATGGGGCAGAGGCTGTAGCAGCAGTAGGCATCGTTCTGAAAATTGTAACATTGGGAACGAACGTGGTTTTCGGATTTGTCAAGGGACTCCAACCGATGGCTGGCTATAACTACGGGGCAGAAAATTTCCAAAGGTTAAAAGAGGCAGTACGTTGTTCCTTGATACTGACAACCTCATTTTGTGTACTTTGGAGCACTTTCATACTCGTTTTTGCTTCTCCTGTTATCAGTTGTTTCGGCAAAGACGAAACAATGCAAGAAATTGCACGAATTGCCCTTAGAGCCAATACGCTAATGTTTTTCACTTTCGGCTTCCAGTTTGTGTATTCCACACTATATATGGCAATCGGAAGAGCAAGACAGAGCCTTTTGCTCAATATTGGACGACAGGGACTCTTCTTTATTCCTGTAATATTGCTGCTCCCATCATATTGGGGATTGAACGGAGTGCTTTATGCACAACCGGTAGCCGACGTCTTTGCAACTTTGATGACACTGTTCTTTGCCATTCAAATTCATAGGGAAATTCGTCATAAATCACATCTCACAACAGAGAATCTACAATGT","10.00","12.34","49036","MXNAVNILQEGSMMKSLTKLGIPIVIAMLIMAIYNVVDTFWVARLGTLPVAAVSVVFPLSLVFLGIGLMFGVGGGVYISRLLGAKQIVKAGQVASVSVITSVILAALIALVCNAFLPEILLFMGANEEMMSLAEAYGRLFIVSCVIGTLNVSMSNIIVSQGASKTSASAMIIGSVINVALDPLFIYAFGWGVKGAAWATILSRIITTIIYTCFFMKAEVKVSFALFVPTIRMYLDIIKIGISMLCLQLLQTLSISLLQRAAVKYGAEAVAAVGIVLKIVTLGTNVVFGFVKGLQPMAGYNYGAENFQRLKEAVRCSLILTTSFCVLWSTFILVFASPVISCFGKDETMQEIARIALRANTLMFFTFGFQFVYSTLYMAIGRARQSLLLNIGRQGLFFIPVILLLPSYWGLNGVLYAQPVADVFATLMTLFFAIQIHREIRHKSHLTTENLQC","884230 885663","PG0742 is part of a long 9927 bp region containing 9 orfs whichis repeated with >99% similarity (9915 identical out of 9927) on the opposite strand. PG0738 to PG0744 have paralogs PG1269 to PG1263.TIGR ID: PG0827","conserved hypothetical membrane protein","Inner membrane, Cytoplasm","Gapped BLAST shows many significant hits to conserved hypothetical proteins including residues 15-429 are 28% similar to residues 17-435 of dbj|BAB05882 Bacillus halodurans, residues 8-392 are 29% similar to residues 12-400 of gb|AAD36768 in Thermotoga maritima and residues 7-431 are 22% similar to residues 11-438 in Borrelia burgdorferi (gb|AAC66867).","
InterPro
IPR002528
Family
Multi antimicrobial extrusion protein MatE
PTHR11206\"[37-451]TMULTIDRUG RESISTANCE PUMP
PF01554\"[23-183]T\"[242-402]TMatE
TIGR00797\"[23-414]TmatE: MATE efflux family protein
InterPro
IPR015522
Family
Na+ driven multidrug efflux pump
PTHR11206:SF6\"[37-451]TNA+ DRIVEN MULTIDRUG EFFLUX PUMP
noIPR
unintegrated
unintegrated
signalp\"[1-32]?signal-peptide
tmhmm\"[20-40]?\"[59-79]?\"[94-116]?\"[135-157]?\"[167-185]?\"[195-215]?\"[236-256]?\"[270-290]?\"[315-335]?\"[354-372]?\"[387-407]?\"[413-433]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 273-429 are 21% similar to a (PROTEIN CONSERVED INTEGRAL MEMBRANE) protein domain (PD114832) which is seen in O25796_HELPY.Residues 115-241 are 27% similar to a (PROTEIN TRANSMEMBRANE MVIN MEMBRANE TRANSPORTER) protein domain (PD001019) which is seen in O51429_BORBU.","","Thu Jun 14 13:42:59 MDT 2001","","Thu Jun 14 13:42:59 MDT 2001","Thu Jun 14 13:42:59 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:42:59 MDT 2001","Thu Jun 14 13:42:59 MDT 2001","","Mon Jun 18 08:39:02 MDT 2001","Thu Jan 18 15:00:55 2001","Mon Jun 18 08:47:47 MDT 2001","Mon Dec 4 09:20:02 2000","","Mon Jun 18 08:39:02 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG0742 is paralogous to PG1265 with 100% similarity within sequencing uncertainity. Residues 5-447 are 28% similar to residues 6-456 of PG0006, another probable integral membrane protein and residues 8-420 are 26% similar to residues 9-404 of PG0577.","Mon Jun 18 08:42:29 MDT 2001","Thu Jun 14 13:42:59 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 23 to 183 (E-value = 2.3e-32) place PG0742 in the MatE family which is described as MatE (PF01554)Residues 242 to 402 (E-value = 2.1e-19) place PG0742 in the MatE family which is described as MatE (PF01554)","Mon Jun 18 08:39:02 MDT 2001","34540604","","","","","","1","","7","PG0827" "PG0742.1","885660","885926","267","ATGTTGAACATAAAAGATATGATTATGCTAAGACTTACTCAAACTGAAGACTTTAAGACAATAATCTCTTTATGCTCTACAAAAGGACAGATACAAAAAGCGTCAGACAACTTTATTCTGAAGATTATTGCCCTATGTGATGCAGAAAGAGATTTAGTCTCATTGTTTCGGACCCTCCGTTATACACGCTTTTGCCTGCAACCTTTGCAAAGGGGAGATTCAATGGACGGAGAGGGGAAAAAATGTATCAGAACTGCTCTTTGTCAT","","","10211","MLNIKDMIMLRLTQTEDFKTIISLCSTKGQIQKASDNFILKIIALCDAERDLVSLFRTLRYTRFCLQPLQRGDSMDGEGKKCIRTALCH","","PG0742.1 is part of a long 9927 bp region containing 9 orfs whichis repeated with >99% similarity (9915 identical out of 9927) on the opposite strand. PG0738 to PG0744 have paralogs PG1269 to PG1263.NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No hits found.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","Thu Jan 18 16:18:55 2001","Thu Jan 18 15:29:56 2001","Thu Jan 18 15:29:56 2001","Thu Jan 18 15:29:56 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","PG0742.1 is paralogous to PG1264.1 with 100% similarity.","Thu Jan 18 15:29:56 2001","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","7","" "PG0743","885952","886275","324","ATGCGAATGCAGGGACTTCTTCCTGCATTGCCAGTCAGACCTGCTAAGAAACTCTGTTGGACAGGCAAAGCAACAGATTTAGTTGAACTCCTTTATGCTCTCGACACTTGCAACAGTATCAACAACGGAGAAATAGGTGTAGAGGAACTGGCAGACGCTCTCTCGGAGATCTTCGGAGTGGCGATAAAGAACAGCTACAACGTCTATATGAACATGAAACGTCGCAAAGATGATAGCCGCACCTATTTTCTTGATGAACTCCGTGAGAAACTTAATAAGCGTATGGTGGAAAGCGATCTGAAAGGCGGCAAGTTCAAAAAGCGA","10.00","4.90","12357","MRMQGLLPALPVRPAKKLCWTGKATDLVELLYALDTCNSINNGEIGVEELADALSEIFGVAIKNSYNVYMNMKRRKDDSRTYFLDELREKLNKRMVESDLKGGKFKKR","885952 886275","PG0743 is part of a long 9927 bp region containing 9 orfs whichis repeated with >99% similarity (9915 identical out of 9927) on the opposite strand. PG0738 to PG0744 have paralogs PG1269 to PG1263.Stevens et al.(1993) have identified a gene which facilitates transfer of a group of transposons, called tetracycline resistance (Tcr) elements in Bacteroides species and whose carboxyl terminal residues show significant similarity to PG0743.TIGR ID: PG0828","possible mobilization regulatory protein (tetracycline resistance element mobilization regulatory protein)","Periplasm, Cytoplasm","Gapped BLAST shows one significant hit to a tetracycline resistance element mobilization regulatory protein, residues 18-99 are 53% similar to residues 129-210 of gb|AAA22922 in Bacteroides thetaiotaomicron.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 18-99 are 53% similar to a (RTEC) protein domain (PD112637) which is seen in Q45784_BACTN.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Tue Nov 18 15:54:18 2003","Wed Mar 14 13:53:40 MST 2001","Thu Jan 18 17:07:27 2001","Thu Jan 18 15:35:58 2001","","Wed Mar 14 13:53:40 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG0743 is paralogous to PG1264 with 100% similarity.","Thu Jan 18 15:35:58 2001","Wed Mar 14 13:53:40 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Mar 14 13:53:40 MST 2001","","","","Stevens AM, Shoemaker NB, Li LY, Salyers AA, Tetracycline regulation of genes on Bacteroides conjugative transposons J Bacteriol 1993 Oct;175(19):613, PubMed: 8407786.Xu,J., Bjursell,M.K., Himrod,J., Deng,S., Carmichael,L.K.,Chiang,H.C., Hooper,L.V. and Gordon,J.I.A Genomic View of the Human-Bacteroides thetaiotaomicron SymbiosisScience 299 (5615), 2074-2076 (2003)PUBMED 12663928","","Tue Nov 18 15:54:18 2003","1","","7","PG0828" "PG0744","886838","886365","474","TTGTGTTTAGCACGTTCTATTTCCAGAAGAGAGAATTACAAACCATTAAAATCCAAAGTAATGACAAAGAGAAATGTGGGACGACCTCCCAAGAATGAACGAGCCGACCATTGTTGTATGGTTCGATTTACGGACACAGAATTTGCTCGTTTCCTAACGCTATTCGAGCAATCGGGGCTTCAAAATAGAGCCGCTTTCATCAAGGCAAGGGTCTTTAATGAGACCTTTCGAGTGATAAAAGTGGATCGTTCGTTGCTCGATTACTACCAAAAACTGACAACTTTGTACGGACAATTTCGCAGTGTCGGGGTGAATTATAACCAAACTGTAGTCGCTTTGAAAAGCAATTTTACGGAGAAGAAAGCCTTTGCGATGCTCACTAAGTTGGAGAAACTGACACTCGAATTAGCTATTATTGGAGGGGAAATCGTACAACTCACTCGTAAATTTCAAGAGAAATGGCAACATCGGCAA","11.00","16.33","18544","LCLARSISRRENYKPLKSKVMTKRNVGRPPKNERADHCCMVRFTDTEFARFLTLFEQSGLQNRAAFIKARVFNETFRVIKVDRSLLDYYQKLTTLYGQFRSVGVNYNQTVVALKSNFTEKKAFAMLTKLEKLTLELAIIGGEIVQLTRKFQEKWQHRQ","886838 886365","PG0744 is part of a long 9927 bp region containing 9 orfs whichis repeated with >99% similarity (9915 identical out of 9927) on the opposite strand. PG0738 to PG0744 have paralogs PG1269 to PG1263.TIGR ID: PG0829","hypothetical protein","Cytoplasm","No significant hits found.","
InterPro
IPR000637
Domain
HMG-I and HMG-Y, DNA-binding
SM00384\"[23-35]TAT_hook


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Thu Jan 18 16:17:40 2001","Thu Jan 18 16:04:25 2001","Thu Jan 18 16:04:25 2001","Thu Jan 18 16:04:25 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","PG0744 is paralogous to PG1263 with 100% similarity and residues 41-157 are 42% similar to residues 17-133 of PG1304.","Thu Jan 18 16:04:25 2001","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540605","","","","","","1","","7","PG0829" "PG0744.1","887513","887148","366","TTGTTCATTTCGTTGCCAGTATATTTACCGATGAAGATGAATACATCCGCTATCGAAGATATGCCCAATAATCGGCTTGTACCAGTAGGGCTACATCCTTTCATTCATACCCTTTCTGTGGAGATGTTCATTAGTGTCCATCAATACAATCGTTCGATTGTATCTGCCTTCGCACATTCCCACGTTCGAGTGAAAGAATCAAGGACATGTTCTTTGACATACACCCTCGCCTATATCGCTCATCGAAACGTGATGTTATCGAAGACACATACCATCACCGACATATTCGACAGTGCAAATATATGGTTCGGTGATGCTGTAATCAGCGTGATTTCCTTTAGTGCGTACTTGTGGCATCGATTTGGA","","","13926","LFISLPVYLPMKMNTSAIEDMPNNRLVPVGLHPFIHTLSVEMFISVHQYNRSIVSAFAHSHVRVKESRTCSLTYTLAYIAHRNVMLSKTHTITDIFDSANIWFGDAVISVISFSAYLWHRFG","","PG0744.1 lies just 3' of a long 9927 bp region containing 9 orfs which is repeated with >99% similarity (9915 bp identical out of 9927) on the opposite strand. PG0738 to PG0744 have paralogs PG1269 to PG1263. The 102 carboxyl residues of PG0744 have 78% similarity to PG1262.1 and PG0744.1 may belong to that repeat region.NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No significant hits found.","
noIPR
unintegrated
unintegrated
signalp\"[1-17]?signal-peptide
tmhmm\"[101-119]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","Thu Jan 18 17:32:34 2001","Thu Jan 18 16:24:29 2001","Thu Jan 18 16:16:20 2001","Thu Jan 18 16:16:20 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","The 102 carboxyl residues of PG0744 have 78% similarity to PG1262.1.","Thu Jan 18 16:16:20 2001","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","7","" "PG0745","887545","887970","426","ATGACAGAGAACCAAAACGGCAAGGTAGATCCCGTTGCCATCCGAGAACTTATTTCACAGGGTATTCCCATGAAAAGAAAAGAGAGTGAGATAAAACGCTCTCAATCGGAAGAGCAGTGTGTTGAATCGGAATGTCCAAATGACGAACCAATGTCAAAGGATTTTTCAAGAGTTTCAAGAAGAGAAAGGCGAAAATCCGACAAAGGCGATTATGAGTCGCTTTTCATCTGTCGCAATACTTTGAAAAATCGCAAGACCATCTATATTGCCAAAGAGTTACAGGATACATTGGCGGAGATAGTCATGTCTATGAGGAATAGGGATATGACCATCGGCATCTATGTGGAAAACATCATCCTCCACCATCTTGAGACCTACAAGGATGAAATCAACAGGTTGGCGGAGATGAAGTTCAGAAAGCTACTG","8.40","2.34","16783","MTENQNGKVDPVAIRELISQGIPMKRKESEIKRSQSEEQCVESECPNDEPMSKDFSRVSRRERRKSDKGDYESLFICRNTLKNRKTIYIAKELQDTLAEIVMSMRNRDMTIGIYVENIILHHLETYKDEINRLAEMKFRKLL","887545 887970","PG0745 lies 3' of a long 9927 bp region containing 9 orfs which is repeated with >99% similarity (9915 bp identical out of 9927) on the opposite strand. PG0738 to PG0744 have paralogs PG1269 to PG1263. PG0745 is paralogous to PG1262 with 94% similarity and may belong to this repeated region.TIGR ID: PG0831","hypothetical protein (possible TraB protein)","Cytoplasm","Residues 49-130 show weak similarity (29%) to residues 52-136 of a TraB protein in Bacteroides thetaiotaomicron, gb|AAG17827.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Tue Nov 18 15:55:26 2003","Tue Nov 18 15:55:26 2003","Thu Jan 18 16:35:25 2001","Thu Jan 18 16:29:27 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","PG0745 is 94% similar to paralog PG1262.","Thu Jan 18 16:29:27 2001","Tue Nov 18 15:55:26 2003","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Nov 18 15:55:26 2003","34540606","","","Xu,J., Bjursell,M.K., Himrod,J., Deng,S., Carmichael,L.K.,Chiang,H.C., Hooper,L.V. and Gordon,J.I.A Genomic View of the Human-Bacteroides thetaiotaomicron SymbiosisScience 299 (5615), 2074-2076 (2003)PUBMED 12663928","","Tue Nov 18 15:55:26 2003","1","","7","PG0831" "PG0745.1","888389","888661","273","ATGGAAGTGTGGAGATTGTCGTCTAAACGGCTTGCTGCCCCGACCTTTTTTGTCCGTAGAAGCCTGGAACTACCTTCGCCGCTGACAACGAACAACCGATCCCGACATGATACACGGCATAAGTTGAGGAAGTGCAGGGAGAGAAGCAGGGCGAACACAAAAAACGCAGTCTTTAAAGACTGCATTTACCATAAGAATAGAATACACAGAAAACAAAAAGCCGCCCTAACGGACGGTTCATACGTTCAAATTGAATATAGTATGAGATGTTTG","","","10859","MEVWRLSSKRLAAPTFFVRRSLELPSPLTTNNRSRHDTRHKLRKCRERSRANTKNAVFKDCIYHKNRIHRKQKAALTDGSYVQIEYSMRCL","","NO TIGR ID corresponds to this gene.","hypothetical protein","Periplasm","No significant hits found.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Thu Jan 18 16:37:20 2001","Thu Jan 18 16:37:20 2001","Thu Jan 18 16:37:20 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","7","" "PG0746","889800","888775","1026","ATGGTAAACTTTAAATTAGGAGTCCCTACAATCGCCACAGTACAAAAGGTTGGCAATAAGTTAAAAGAAGAAGGTATAGCATTTTCTTCTAAAGCAGATGATATGTCGTTTGCTTCTGGATTTATTTCAACATTAGTAAAAAACACATTCAAGTTTGATGTTTTCTGTCAGTTTGATTCTATAGAGTCTTTAGACATGAATCCGTCATATAGATTTGTACACAAGATTTTTGATGACAAAGATGATATAGTTAAACAATCTAACAATCTTGCTAGACACCTTTATGATCAAAGCATACACCCTAATATTGCTAATGGTGAGTTTTATATAATTTACATTGATGGTTGCATGCTTAACAATGAAACAGTTGATGCACTTATGCTTCTCAAAACAGAAGCTAAAGATAGCTTTTTAACCGTATCCTATGAAAATGGAGAATATTCCATCAAACCTCAGTTAGGCTTGAGTACAAAACACTTGGATAAAGGTTGCTTAATTTTTAATACAAAATCAGAGGACGGGTACTTGATTTCAATCGTGGAAACATCAACTATTCGTCAAGATGGTAGATATTGGTCGAATAACTTCCTATATGTTAAGGATATTATCACCGATTTTCAATATACAGAAAACATAGCGAACTTTTGCTCTTTTATAGTGCAAAAGGTAAGTAAAGAACATCCTGAAAAATCCTTGAAATTAGCGAAGGTGTCTCGAAGAATTACACAAATGTTGCAAGATGATGGTGCCGAAATTAATACAAATGAATTGATTTCATCATTAGCAATAGATGACGAAGTAGCATCCTTATTACCAGTGTGTCGAAAGGAATATGAAGATAGAACAGGAAAAATACCAGAAATATTTAAATGCACACAAAATGCGACGAAAAGAAAAGCTATAACAAAGGCAAACATTATAAAAATAGGGACAGATTTTGAACTTAAGGTGTTAGATGCGTCTGCCTTTATTGAACAAGGATATGATGATGAGAAGAAAAAGAATTTTATTAAACTATACTATGAA","5.40","-6.06","38994","MVNFKLGVPTIATVQKVGNKLKEEGIAFSSKADDMSFASGFISTLVKNTFKFDVFCQFDSIESLDMNPSYRFVHKIFDDKDDIVKQSNNLARHLYDQSIHPNIANGEFYIIYIDGCMLNNETVDALMLLKTEAKDSFLTVSYENGEYSIKPQLGLSTKHLDKGCLIFNTKSEDGYLISIVETSTIRQDGRYWSNNFLYVKDIITDFQYTENIANFCSFIVQKVSKEHPEKSLKLAKVSRRITQMLQDDGAEINTNELISSLAIDDEVASLLPVCRKEYEDRTGKIPEIFKCTQNATKRKAITKANIIKIGTDFELKVLDASAFIEQGYDDEKKKNFIKLYYE","889800 888775","TIGR ID: PG0832","conserved hypothetical protein","Cytoplasm","This sequence corresponds to gi:34396920 in Genbank.Its nearest neighbor in the NR database is gi:48856002 from Cytophaga hutchinsonii.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Mar 3 15:54:00 2005","Thu Mar 3 15:54:00 2005","Thu Jan 18 16:39:01 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 3 15:54:00 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540607","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Thu Mar 3 15:54:00 2005","","1","","7","PG0832" "PG0747","891665","889803","1863","ATGAATCTATATATTGCTAGCATAAAGTTGTGGTTCAAGGGGTTTAAAGAAAATACAGAAAGATCGATAACCTACTCGTTCGAACCAAATAAAATTAATGTTATTACAGGAGACTCTTCCACAGGTAAATCTTCTATACTTGATATTATTGATTACCTCCTATTGTCAGATAATCCCACTATAGTTGAGAATATTATTAATGAAAATGTTGAATTCTATGGAATGAATATATTTCTTGAAGAAAGAAGCTACATCCTAATGAGGAAGGCACCTCATTCAGGACAAGGTACGCAAGATGTGTATTGGAAGGAGCAAGAGGAATATCCTATGCCATACATACAGACTCACTCTGTGGGTGAGATGAGAACAATTCTGACAAGGATGTTTTATGTTCCTCAGCATGAAACTAAAGTTGGTAATCGGAAGTACAATATGACCTTCAGGCATTTTTTGCCATTTAATTATCTAACAGAGGATATTATTTCATCAGCAAACACTTATTTTGATACGGCATTTTTTATTAATCGTAGTTATGATGTTTTCCTTGATTATGCATTAGAGCTTGTTAATGGTATTCAATATCATAATGCAAATGAGATTAAAGCTAAAATTGAGAAAGCAGAAATTGATTTAAAGCAATATCAGAAAAAACATCAAATAGCTCAAGAAAATGCGACCAAATATAAAGCTAGTCTCACTTCTATTTATGATGATGCCTTAAGTCTCAACCTTATTCCTGCAGATAATTTTTTTGTTCGTGAGAATGCACATGAAATGTTACATTATATCAAAGAAGCTTTAGCTGCCTATAATAAGCTAATAAAAAATGATGAGGATACAAAGAAATTGGAATTGCTTAAAAAAGAGAGGTATGAATTAAATAATAAATTAAGTATCTATAACTCTTTACTAGCTGAAATGCAGAAGCAAAAGTCCTCAGGAAAAAAGATTCAAGATAGTTTGCGTCCTATTACCTTTATAAAGGAGCACATAGATGAAGTCATAATTTCTCCTGAAACCATTGAACTTCTTCATTTGTTAGAGAAGCAACTAGTACAAATCAAGGAGTCCAGAAAGGAGAAGCCCAAATTACCTCATGATTTTGCTTTAAGGCACGAAGAATTAAAAGATAAGCTTAAGGCATGTGAGAGTAAATTGAAAGAATTAACGATTCTTCGTAAAACCATAGCAAATCCCAAATGGCTAGAACGGGCCATAGGTCTTAAATACCGATTAGAAAATTTGAAAAGACCAAAAGAGGATACTTATCAGGCAAGTACAGAGCAAAATATGATTTCTTTAATTGAGTCTTTGAAGATAGAGCAGAAGAATATGTCTTTATTGCCGCATGATGTAAAAGAGAAATTGAATAGTTATATAAATAAATATTTTCACTCAATCAATGGTATAGTGGATTCTTATCCAGATTCTACAATGCGTTATGATGATGATGAAAGAAGAATCTCTTTGCTAAATAATGGAGAAGATTATCCTGTTCGAAATATTGGAAGTAAATCAAACTATATGTTCTTGCATTTGTGTTTCTTTTTGGGGCTACATGAGTCTATAATGTTTCATCGGTCCAAACATGTTGGCTCATTTCTATTTATTGATCAGCCAAGTATGCCATATTATGCAGATAAGGGTACGCTTGATAATGACGATAAGAAACAACTTATAAAGGCTTTCCGTCTGCTCAATGAATTTATGGAAGAGATTATTGGGAACCAAAATAGAAGTTTTCAGATGATATTAATCGAGCATGCGGATGAATCATATTGGAAGGAACTAGAGTATTTCCATACAACAGCAACGTTCTCTAAAATTGCACAAGGAGGCTTAATTCCTAAATATATCTACGAA","6.90","-1.20","73081","MNLYIASIKLWFKGFKENTERSITYSFEPNKINVITGDSSTGKSSILDIIDYLLLSDNPTIVENIINENVEFYGMNIFLEERSYILMRKAPHSGQGTQDVYWKEQEEYPMPYIQTHSVGEMRTILTRMFYVPQHETKVGNRKYNMTFRHFLPFNYLTEDIISSANTYFDTAFFINRSYDVFLDYALELVNGIQYHNANEIKAKIEKAEIDLKQYQKKHQIAQENATKYKASLTSIYDDALSLNLIPADNFFVRENAHEMLHYIKEALAAYNKLIKNDEDTKKLELLKKERYELNNKLSIYNSLLAEMQKQKSSGKKIQDSLRPITFIKEHIDEVIISPETIELLHLLEKQLVQIKESRKEKPKLPHDFALRHEELKDKLKACESKLKELTILRKTIANPKWLERAIGLKYRLENLKRPKEDTYQASTEQNMISLIESLKIEQKNMSLLPHDVKEKLNSYINKYFHSINGIVDSYPDSTMRYDDDERRISLLNNGEDYPVRNIGSKSNYMFLHLCFFLGLHESIMFHRSKHVGSFLFIDQPSMPYYADKGTLDNDDKKQLIKAFRLLNEFMEEIIGNQNRSFQMILIEHADESYWKELEYFHTTATFSKIAQGGLIPKYIYE","891665 889803","TIGR ID: PG0833","conserved hypothetical protein","Cytoplasm","Using gapped BLAST residues 27-598 show 21% similarity to residues 23-630 of a yme gene in Agrobacterium tumefaciens, gb|AAB91579 and residues 1-601 show 23% similarity to residues 1-636 of a conserved hypothetical protein in Vibrio cholerae, gb|AAF93663.","
noIPR
unintegrated
unintegrated
SSF52540\"[8-487]TSSF52540


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 27-254 are 21% similar to a (ORF13 PLASMID) protein domain (PD129830) which is seen in O52295_AGRTU.Residues 381-598 are 23% similar to a (ORF12 PLASMID) protein domain (PD127887) which is seen in O52294_AGRTU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Jan 18 16:51:51 2001","Thu Jan 18 16:51:51 2001","Thu Jan 18 16:51:51 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540608","","","","","","1","","7","PG0833" "PG0747.1","892090","891665","426","ATGAACAGAGTTTACAATAATGAAGCAATAATTATGGCATGTATTGTTCATCTTCTCAGAAGAAGGAATATGGATATGCCAATATCTTATATCATGGTTACTTTGCTAATAGATAATCAGTTGGGGGCGATTATTCGTAAGTCCCAGAATTTTGAAGAACTTTCTGATTTGATTAGTAAACAAGGATTAATTTCTCGAAAATTAGCATCTTTCGGACCATATTTCATAAATGCTATGGTAATTCTCAAGCAAAGTAAGGTTATCGCTATATCAGGCGATGTTGTGCAATTAATTGATTATTCTTTTCCTGATGAGAATTTGCGTTCTAAGCGATTGGAGAGAATTATCAATGATACCAATGTTTTATTGGATATGTGTAGTAACTTATCTTCCAAAGAAATTTATAACAAATTGAATGTACAATTA","","","16293","MNRVYNNEAIIMACIVHLLRRRNMDMPISYIMVTLLIDNQLGAIIRKSQNFEELSDLISKQGLISRKLASFGPYFINAMVILKQSKVIAISGDVVQLIDYSFPDENLRSKRLERIINDTNVLLDMCSNLSSKEIYNKLNVQL","","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No significant hits found.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Thu Jan 18 16:56:53 2001","Thu Jan 18 16:56:53 2001","Thu Jan 18 16:56:53 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","7","" "PG0748","893352","892093","1260","ATGAGCGTAATAACACCATCTAAAGAGCAAAGCAAACGTTCGGCTGCTGATATTTTTGTAGCCTTTGAATATCAATGGGATTACTTTGTGCTAATGCTATTAAAAGAAAACGATGATGATGCAACTGTTAGCTTTGAATTACGTGATGATGTTGATACACAAACGGAGGAGGGTATAACCCTATATCAAATAAAACATAGTGTCCGTAAAAGTTCAAAAGGAGAAACGATTAATTTAAGCAATCGGGATACTGATTTGTGGAAAACTATTTCCATTTGGATGAAATATATTGATGATGAACCAGATATTTTAGAAAATACAAAGTTTCAATTGATAACAAACAAAGCAATCTCTAAGAATAAATTTGTTGAAGCAATTGAGGCTTTTCATAATACTCATTCGGTCGAGGATTTAAAATCAGCCATTGTCACTATAAAAGAATCTGAAAGAACAGAAAAGAGTAAGATAAAATCTGATAACTCGGTAACTAACCACTTAAATGTGGCACAAATAATCACTGATCTGCTCAATAAGACTTATCTGAATGAGTTTTGTTCTCGGATCTATATTTTGAAAACGTCAGATGTCTTGGAAGAAGATATAAAACGAATCATGAGTAATCGCTTTGGCTTAAATCATAATCGTATTGATTGGGTATATGATCAACTTATGACAAAGTTAAGAAATGATTCCATTGATAATATAAAAAGTGGTAAGTCGGTAACATACAATGGTGCGGTTTTCAAAGAACGATATCAAAGCATACTTGATATTGGTAGAAGGAAAATTTATTTTAAGGATTGTTCTATTAATGATTTTGAGGGAAATTTTCGTGAATTATTGTTTATGAAGCAACTTTTTTCAGTATATTACGTTAAGGAAAATGAAGTGGATAGAATGTCTCGATTGACTTTAAGCTGGTTACGCTTTAATAATAATTTTCATGAACTTTGCAATGATAATATTTTAATAAATGAAGATGTGAACAATTTGACCAAGGATGTACTGTCGGCGTGGGACAATTGTTATAATAAAAAGTACCGCAAAATTACAGAAATGTCTACAGATGATGAATTAAGTGAGGCTGGATGTTGTACTATTGATGATATGAGAGAAAAGTTGTTTTCTTTGGCTGAAACACCATTAGGAAATCAATTAAGTGAAGGGTGTATTTATTATTATTCCAATTCTGCAACAGAAATAATTCCAGATTTACCATTGATAGGTTGGCATCGTGATTGGAAAAATAAATTCAAGAAG","5.30","-9.60","49259","MSVITPSKEQSKRSAADIFVAFEYQWDYFVLMLLKENDDDATVSFELRDDVDTQTEEGITLYQIKHSVRKSSKGETINLSNRDTDLWKTISIWMKYIDDEPDILENTKFQLITNKAISKNKFVEAIEAFHNTHSVEDLKSAIVTIKESERTEKSKIKSDNSVTNHLNVAQIITDLLNKTYLNEFCSRIYILKTSDVLEEDIKRIMSNRFGLNHNRIDWVYDQLMTKLRNDSIDNIKSGKSVTYNGAVFKERYQSILDIGRRKIYFKDCSINDFEGNFRELLFMKQLFSVYYVKENEVDRMSRLTLSWLRFNNNFHELCNDNILINEDVNNLTKDVLSAWDNCYNKKYRKITEMSTDDELSEAGCCTIDDMREKLFSLAETPLGNQLSEGCIYYYSNSATEIIPDLPLIGWHRDWKNKFKK","893352 892093","TIGR ID: PG0834","conserved hypothetical protein","Cytoplasm","This sequence corresponds to gi:34396922 in Genbank.Its nearest neighbor in the NR database is gi:9654920 from Vibrio cholerae O1 biovar eltor str. N16961.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Mar 3 15:57:17 2005","Thu Mar 3 15:57:17 2005","Thu Jan 18 17:05:21 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 3 15:57:17 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540609","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Thu Mar 3 15:57:17 2005","","1","","7","PG0834" "PG0749","895135","894089","1047","ATGAGAATGAATTTCAAGGTATCCTTCTACCTACGCTCAAACTATGAGAATAAAGAAGGGAAGTCGCCTGTTATGCTCCGTGTATTTCTGAATGGAGAGATGGCAAATTTCGGTTCCACGAAAATCTTCGTGGACAAAACATTGTGGAATAACACAGGTAGTCGTCTTAAAGGTCGCACCACCGAAGCCTTGTCGGTCAATGCCGCATTGGACTCCATTTCCACTACACTGAATAGTATTTTCCACAAGTTTGAGAATGATGAAACCCTTTCGTTGGACAGGATCCGTTCGTACTTTGTCGGAAAAGACAGAGAATACACTACTTTCCTTCCTGTGTTCTACAAGTTCAATGATGACATCAGGCAGCGTGTTGGTCATACCATTAGTCAAGACAGCTTGCAAAAGTACAGTGTCCTTAGAAGACACTTTGGGGAGTTTCTATCCTATAAGTACGCTTGCAAGGACATCAATCTGACAGAACTCACACCTGCCGTGGTTCAAGACTTTGAGTTATATTTGAGTACCGTTGCCGGATGTTCTTATAACACCTCGGTCAAGAAGATGAAGACGCTTAAAACCATAACTATCTATGCACAGAAGCGTGGGTATCTGTTGCATGACCCATTCCTCAATCACCGCTTCCACTTGGAGCCGGTAAACCGAGGTTTCCTCACAGATGAGGAAATACTGAAGATTGCCAACAAGGAACTGGGTATCCAACGGTTGGAACAGGTACGGGATATGTTCATCTTCTCCTGCTTCACGGGACTGGCATATATCGACGTGTCCAATCTCACGCCTGACAACATCGTTATGCTCGATGACAAGCAGTGGATTATGACCAAACGGCAGAAGACGAGCGTGGAAACGAATGTCCTGCTTCTGGATATTCCCAAGAGCATCATTGCCAAATACAACCACAAAACCTATCGTGAAGGCAAACTCTTTCCCATTCTGAGTAATCAGAAAACCAACTCTTATCTCAAGGAGATAGCCGACCTTTGTGGTATCAAGAAGAACCTTACCTTCCATATGGCAAGGCATAGA","10.20","15.99","40645","MRMNFKVSFYLRSNYENKEGKSPVMLRVFLNGEMANFGSTKIFVDKTLWNNTGSRLKGRTTEALSVNAALDSISTTLNSIFHKFENDETLSLDRIRSYFVGKDREYTTFLPVFYKFNDDIRQRVGHTISQDSLQKYSVLRRHFGEFLSYKYACKDINLTELTPAVVQDFELYLSTVAGCSYNTSVKKMKTLKTITIYAQKRGYLLHDPFLNHRFHLEPVNRGFLTDEEILKIANKELGIQRLEQVRDMFIFSCFTGLAYIDVSNLTPDNIVMLDDKQWIMTKRQKTSVETNVLLLDIPKSIIAKYNHKTYREGKLFPILSNQKTNSYLKEIADLCGIKKNLTFHMARHR","895135 894089","TIGR ID: PG0836","possible transposase","Outer membrane, Cytoplasm","Gapped BLAST shows 38% similarity to a transposase in B.fragilis, gb|AAC80279 and residues 129-316 are 35% similarity to residues 6-193 of a integrase-like protein in B.fragilis, gb|AAG17464 and gb|AAG12447","
InterPro
IPR013762
Domain
Integrase-like, catalytic core, phage
G3DSA:1.10.443.10\"[223-348]Tno description


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 6-342 are 23% similar to a (INTEGRASE INTN1) protein domain (PD141349) which is seen in Q45794_BACUN.Residues 1-321 are 37% similar to a (TRANSPOSASE) protein domain (PD214991) which is seen in Q9ZI85_BACFR.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Jan 18 17:23:00 2001","Thu Jan 18 17:23:00 2001","Thu Jan 18 17:23:00 2001","","Wed Mar 14 13:58:41 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG0749 shares 51% identity with PG1258, a transposase, and has strong similarity over it's entirity to PG0994, PG0735, PG0736, PG0750, PG1271 and PG1272.","Tue Apr 3 17:03:57 MDT 2001","Wed Mar 14 13:58:41 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Mar 14 13:58:41 MST 2001","","","","Vedantam,G., Novicki,T.J. and Hecht,D.W. 1999. Bacteroides fragilis transfer factor Tn5520: the smallest bacterialmobilizable transposon containing single integrase and mobilization genes that function in Escherichia coli. J. Bacteriol. 181 (8): 2564-2571. PubMed: 10198023.","","Wed Mar 14 13:58:41 MST 2001","1","","7","PG0836" "PG0750","895619","896914","1296","ATGAATATCAAGCGCAATATCATCTTTGCTCTGGAGAGCCGTAAGAAGGACGGTGTCCTGATCGTGGAGAACGTCCCTATCCGTATGCGAGTGAATTTTGCTTCCCAGCGAATAGAGTTCACTACGGGCTATCGTATCGATGTCGCTAAATGGGATGCAGACAAGCAACGAGTAAAGAATGGATGCACGAACAAGCTGAAGCAATCAGCCTCGGAGATCAACGCTGCACTCCTAGGGTACTATACCGAGCTGCAAGAGGTGTTCAAGCGTTTTGAAGTGGCCGAGGTCATGCCAAGCCCCGCCGATGTTAAGAGCGCCTTCAATGCCCGTCATAGGTCTGATGACGTACAAACGGAGCAGACTTCCGATAAGCCTGATGCTTCGGCAGAGTTCyACAAGGCCTTTGATGAGTTTGTTCGGGTCTGTGGTCGGCAGAATGACTGGACGCACGCCACCTATGAGAAGTTCGCTGCAGTGAAGAATCATCTTAGATCTTTCCGAGCAGACCTTAGCTTCTCCTTCTTCAATGAGGTGGGACTGACGGAGTATGTGCGCTACCTTCGGGAGGTACGCAAGATGCGCAATAGCACGATCGGGAAGCAACTCAGCTTCTTGAAGTGGTTCCTGCGTTGGAGTTTTGGTCAAGGGATACATAGTAACAATGCCTACGACACTTTCAGACCTAAGCTCAAGGATACGCAGAAGAAGATCATCTTCTTGACTTGGGAGGAGCTGACGAAGCTCCGAGAGTTCGAGATCCCTCCAGCTAAGCAGTCACTTGACCGTGTGCGGGATGTTTTCCTCTTCCAGTGCTTCACGGGACTAAGGTATTCGGATGTCTACAATCTCAGAAGAAGTGATATCAAGGAGGATCATATCGAAGTCACTACGATCAAGACTTCTGACAGCCTGGTCATCGAGCTCAACAAGCACAGCAAAGCTATCTTGGAGAAGTACCAGGATGTGGTATTTGAGCACGATAAGGCGCTCCCCGTGATCACCAACCAGAAGATGAATGAGTACCTCAAGGAGCTTGCCGAACTTGCTGGTATCAATGAACCGATTCGCCAGACCTACTACAAGGGAAATGAGCGCATCGATGAAGTGACTCCTAAGTATGCTCTGCTCGGTACGCATGCTGGTCGTCGGACCTTTATCTGTAATGCGCTTGCCCTTGGTATTCCTCCGCAAGTCGTGATGAAGTGGACGGGGCACAGCGACTACAAGGCAATGAAGCCCTACATCGATATTGCAGACGACATCAAGGCGAATGCCATGAGTAAGTTCAACCAGCTA","9.90","13.01","106247","MNIKRNIIFALESRKKDGVLIVENVPIRMRVNFASQRIEFTTGYRIDVAKWDADKQRVKNGCTNKLKQSASEINAALLGYYTELQEVFKRFEVAEVMPSPADVKSAFNARHRSDDVQTEQTSDKPDASAEFXKAFDEFVRVCGRQNDWTHATYEKFAAVKNHLRSFRADLSFSFFNEVGLTEYVRYLREVRKMRNSTIGKQLSFLKWFLRWSFGQGIHSNNAYDTFRPKLKDTQKKIIFLTWEELTKLREFEIPPAKQSLDRVRDVFLFQCFTGLRYSDVYNLRRSDIKEDHIEVTTIKTSDSLVIELNKHSKAILEKYQDVVFEHDKALPVITNQKMNEYLKELAELAGINEPIRQTYYKGNERIDEVTPKYALLGTHAGRRTFICNALALGIPPQVVMKWTGHSDYKAMKPYIDIADDIKANAMSKFNQL","895619 896914","Wang et al.(2000) have identified a mobilizable Bacteroides element NBU2 (11 kbp). The integrase gene, intN2, they located has high similarity to PG0750 and is located at one end of the element. IntN2 is necessary and sufficient for the integration of NBU2.TIGR ID: PG0838","integrase","Cytoplasm","Gapped BLAST shows residues 1-431 are 74% similar to residues 1-427 of an integrase, intN2 in B.fragilis, gb|AAF74726.1|AF251288.","
InterPro
IPR002104
Domain
Integrase, catalytic core, phage
PF00589\"[248-424]TPhage_integrase
InterPro
IPR013762
Domain
Integrase-like, catalytic core, phage
G3DSA:1.10.443.10\"[239-427]Tno description


","BeTs to 5 clades of COG0582COG name: IntegraseFunctional Class: LThe phylogenetic pattern of COG0582 is aMtk-qvcEBRHUJ---LINXumber of proteins in this genome belonging to this COG is 8","No significant hit to the Blocks database.","Residues 203-422 are 28% similar to a (INTEGRASE INTN1) protein domain (PD141349) which is seen in Q45794_BACUN.Residues 24-320 are 23% similar to a (TRANSPOSASE) protein domain (PD214991) which is seen in Q9ZI85_BACFR.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","Tue Feb 6 13:23:41 MST 2001","Tue Feb 6 13:23:41 MST 2001","","Thu Jan 18 18:25:51 2001","Thu Jan 18 18:25:51 2001","Thu Jan 18 18:26:47 2001","Thu Jan 18 18:25:51 2001","","Tue Feb 13 17:58:01 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 26-354 are 29% similar to residues 23-341 of PG1258 and residues 1-364 are 26% similar to residues 3-349 of PG0749, a possible transposase. PG0750 shows weak similarity to PG1272, PG0735, PG0994 and PG0736.","Tue Feb 13 17:58:01 MST 2001","Tue Feb 13 17:58:01 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 240 to 424 (E-value = 4.3e-07) place PG0750 in the Phage_integrase family which is described as Phage integrase family (PF00589)","Tue Feb 13 17:58:01 MST 2001","34540611","","","Wang J, Shoemaker NB, Wang GR, Salyers AA, Characterization of a Bacteroides mobilizable transposon, NBU2, which carries a functional lincomycin resistance gene, J Bacteriol 2000 Jun;182(12):3559-71, PubMed: 10852890.","","Thu Jan 18 18:25:51 2001","1","","7","PG0838" "PG0750.1","897292","897017","276","ATGTACGCTACCAAAGAAAAATGTACGTCGGTAAGTTTAGTCATTTGTTTTATAATATCCTCTTGCGCTATCATGTCCTATTCTTTATACTTTAGAATTAAAGCAAGAGGCTCTTGCATAGTTTTGCAGAGAGCCTCTAAATGGCTCAAAACCAGCTCTACAGGAGAATTTATCAAAGCCTTATTGCCCTTAGCACCATCAACGACTCAGCGAATTAACGCAGGTGAAGGAGGTTCCGAGCTGGACACAGCGTCTGCTCAGGATACGGCGAGGGGA","","","9884","MYATKEKCTSVSLVICFIISSCAIMSYSLYFRIKARGSCIVLQRASKWLKTSSTGEFIKALLPLAPSTTQRINAGEGGSELDTASAQDTARG","","NO TIGR ID corresponds to this gene.","hypothetical protein","Periplasm, Extracellular","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
PS51257\"[1-22]TPROKAR_LIPOPROTEIN
signalp\"[1-23]?signal-peptide
tmhmm\"[10-30]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","7","" "PG0751","897355","898533","1179","ATGATGAAGTATATATTCAGAACATTTTCTTGCGGATCGGGAGATTGCATATTCCTTATTCTTAAAAGTGGTGACTATACATTAAATCTAATGATTGATTGTGGTAAGTACACTGAGGAGATAGATGAGTATGTTAGGAATAGTTTGAAAAATAAGATTGATTATCTGATAGTGACGCATATAGACAATGATCATATCAACGGGCTGATAAAAATGCTAACTCAAAATCCAGACCTTATAATCGAACATATCATATATAACTGCTACCAAAGGGTTATTAACAATGAGCAGCCATGGACGGAGCAGATGAAAGCGAATGTGGATAGGCTATATGATCAGTTGCCCATTGTGATTGATATGCTAAGTCAAAATGTCAATGAAGAAAAGGCGCTGACCCTGGCAGAATGTATATTGAGAAAAGAAGAATGGAGGAGGGCTTGGCAAAGAGAATATATTACAGATGAGTCTCCTGCGATTCAACTTGCCAACAATATGGGGAGGATTATTTTCCTTTCTCCTTCCCAAGTTGCGTTAGATAGACTAGATGTAAAATATCGAAAGCTATTTTGGCAACAACTGTACAAACAAAAAACAGAAGACTATGATGGGGAGGAAACTATCTATGAGGCTTTGATGAGAATTGCACAACTAGAAGAAGGCGAGGAGACAAAAGATGAGAACGTAAATGATGATACGATCAATGAACAGATATTGAAGCGATATGCATCCCGCCCATTATCGAAAATGGATGACAACAATATCGCTTCTATTGCCTTTATTTGGGAGTATCAAGGACATCGGATTCTGCTTATGGGAGATGCAGATCCGGAGCAGGTGAGCAATGCGATAGAAAAAGTATATAAAGATGAAACAAAACCAGTCATCTTTGATTTAATTAAAGTTTCTCACCATGGTAGTGCACACAGTACTTCATGTGGGTTGATGGATGTGATTGATAGTGAAAGATTCTTCTTTACAGGAGGAGGAAAAGAGAGGCCGAGCCTACAAACGCTGGGGAGAATCATCATAAGGCCCTTGCCTAATGGGATAGCATATCGGGATATCCGATATAATCGTCCTAATGAAATCTTAAATAAGCTGGCTAATCTTTCTGTAGATGAAAAGGGTAGCCTCCACATCAGAGTGAATCACAACGAAAATGGCTATGAAGTTTCCTGC","5.00","-14.12","45723","MMKYIFRTFSCGSGDCIFLILKSGDYTLNLMIDCGKYTEEIDEYVRNSLKNKIDYLIVTHIDNDHINGLIKMLTQNPDLIIEHIIYNCYQRVINNEQPWTEQMKANVDRLYDQLPIVIDMLSQNVNEEKALTLAECILRKEEWRRAWQREYITDESPAIQLANNMGRIIFLSPSQVALDRLDVKYRKLFWQQLYKQKTEDYDGEETIYEALMRIAQLEEGEETKDENVNDDTINEQILKRYASRPLSKMDDNNIASIAFIWEYQGHRILLMGDADPEQVSNAIEKVYKDETKPVIFDLIKVSHHGSAHSTSCGLMDVIDSERFFFTGGGKERPSLQTLGRIIIRPLPNGIAYRDIRYNRPNEILNKLANLSVDEKGSLHIRVNHNENGYEVSC","897355 898533","TIGR ID: PG0839","hypothetical protein","Cytoplasm","One significant hit in gapped BLAST; e.g. residues 12-342 are 23% similar to emb|CAB46587.1| hypothetical protein of Yersinia enterocolitica.","
InterPro
IPR001279
Domain
Beta-lactamase-like
PF00753\"[13-83]TLactamase_B
noIPR
unintegrated
unintegrated
SSF56281\"[2-81]T\"[256-328]TSSF56281


","BeTs to 3 clades of COG0426COG name: Uncharacterized flavoproteinsFunctional Class: CThe phylogenetic pattern of COG0426 is AMTK-qVCe------------Number of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Mar 8 16:37:35 MST 2001","Thu Mar 8 16:37:35 MST 2001","Thu Mar 8 16:33:43 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 8 16:33:43 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Mar 8 16:33:43 MST 2001","34540612","","","","","","1","","7","PG0839" "PG0752","898514","902542","4029","ATGGCTATGAAGTTTCCTGCTGAAATAAGAGATCGGCTGTATGCAACTATTGTTCCCGTAAAGTGCGGGAGTAATAGAGGAACAGCTTTTTTTATAAAGGATGATACATTGCTGACCGCACGTCATATATTGGGCGACTATGCAGTTGACAATGAAGAAGTATTTATTCAAGTTGACAACAAAAGTATAACATGTCAAATAGAGTATATTGCAGCAGAAGAAGATCCTGTAGATGTTGTAGTATTAAGAACAGATAAGTATAAACACGAGCAATACCTGCCTCTGTTGTCTGCTGTTTTTAATGAGGAAAGACCTTTGTGTATTGTAGGCTATCCGAAAGAACTTGTCAATGGCAAAGAACTTGTAAGCATAGATGTACATGATAGAATCGGAACAACGAAACAAGAGTTTGATACGGCTGTAGTCAGAACCGACTCACTTGAGTTGGAGTCTTACAAAGGTTTTTCTGGTTCGCCCGTGCTAAATGAAAAGGGTTCTGTAATAGGTATTACATTAAAGCAATTATATGGAGGGTTGGGGTATTGTTCGGTGAATTGTATTAAAGAACTGTTGAAATTGCATGGTCTAAAAGTATCAGAAGACTGGCAGAGTGAAGATTTTTCTCCCACGGGAAGGGGAACAAGTCAACGACAGGTAAACAATGCTATTAGCTATGCAGCTCTGAGATACAATGCTGATTTACATATCGCAAACAGAGAATTGGATGATAAAATCGATTTGTTTGCGGTAAAGGAACTGCAGGATGAACTCTATAAGCGATTGTTAAAGTCGGAAAGTATTGCATTATCGATAAAGTATATTGGCGCACGTCTATCCAAATATAAAGAAGGTGATTATAAAGATCTCTATTCTCAGCTGGAGAATATACGTGCCAATTATGCAGAAGATAGATCTCATGAAGGATATCCTACAAACTTCTTTCGGGAAGAGTTGCCACGGTTGGAAGCTGACATCGATTCTCTGTACTATTGCGAAAGTAAGCTATTGATAATAGATGCAGAAGCTGGCATAGGTAAGACTCACTATATGTGCGCTACGGCACAGCGGCTATCTCAACATATAAATGTATATCTGTTATTTGGTAGCAGATTTTCCACGCAAGAAGACTTTGAATTGCAGCTGGCAAGAATGTTAGGAATAGGGGGTAGGTCTTTGGAGGAGTTGGATGATGCCATGGAAGATCAACATTCGAATGCTCTCATCATTATTGATGCTATCAATGAGGGGGCAACAAATGTATTTTGGGACAGGGAGCTAAAAAAACTAGGGGAAAGGGTCTATCAATTAAAGAACCTGCGGGTAATCGTTACATACAGAGTGGGGGACTTTGAGCCTTCGGATGTTTGGGGGAATTGGAGGAAAGCATCTATGAAAGGGTATGGTTCACAAGTCCGTGAAGCTGTTAGAAAATACTTTGCCCATTACAAGATAAAGGACGAAGATGGTTCGATTTGCTATCGTTTCTTAGAGGAATTTAAAAATCCGCTGTTCCTAAATATCTTCTGTCAGGTTGTGAGTCAGGATTTTAGCTTCTTAAGGGGCAATTTTTCCTACGTGGAACTTTATAGGCGGTATATAGGATATAGGAACATCATAGTTTCAGATGGGGTGGACGAAGATTCTCGCCGGCATGTAACAGAAAAGCTGTTGGATAAACTGGCAAAGTATTCATTGTTCTATAATTCATGTCAGGATATCCCAAGAGAAAAGGCAAGACTCTATGCAGATCAAATATGTAGAAACAGAACATGGCGCAATAGTTTGTTGTACTGGGCAATCAAAGAAAATCTCTTACTGGAAACAGGTTTGGATGGTGAAGGTCTCATGTTTGGCTTTCAGAAGATTGGTGACTTCCTAATGGCTGATGCATTTTGCAAAAGCAAAATGAAAGATAGTGCGAAAGTAGATTTTGTCATAGAGAAGTCAGAATGTCAGCAATATCCCCTGTACAAGCGTTTTCTCGTGGCCTTATTTTCGGAGTGGTCCCTTATGCCAGAGTTTTTGGATAGGGATTTACTTGTACGCAGGGAGACGTTGTTAGATATTTTGTTGGAAAGTCTGCATTATCGATCAAGAAACAATAGGTTGGTATTCAGTTGGATGGTAAAAGAACAGGTTTTCTCATTAAGGATATTGCGTGATTTTATAAACATATTGCCGGAAGATGTATTTCGTATGGCTCACAGTAGGTTGATGAATGCATCATTGGTTAATAGAGATAAGAAATGGACAACGTCTGTGAATTCTATATATGACTCCTTCTTATCTAGTAATGTAGATGATTTTCTTGAAATTGAAATCACAGAGAATAACAATCGGAAATATCTAATACTTCTAGGATGGATGTGTGTATCAACGCATCCTTTTATCAGGGGTAGAGCGTTGAGAAAATTGGTGTATTTGTTTGATAAGGCACCAGAGTTATTACAAGAAGCTTTACGTTTGTTTGCTTCATGCAATGATATGTATGTGGTAGAAATGATCGTGTGTTCCATTTATGGACACCTGCTAAGAAGTAGAGACAAGAACGTGTGTGCAGAGATTGCAAAGATGATGCTGAAAATATTTTATGTAGATGGGAAAGCTCCATCTGATATACTGGTCAGACAATGGAGTATGTTGATTTTTCAGTATGCAGATTACTTGAATGGAGGTAGTGCTTTTTGGAGGGAAATAGAAGTTCCCTTCATAGCAGAGAGCCCTTATTCGTTAATGACGTCACAATTGGAGGGTAAAGAAACCTATTTTGGCTCTTCTGATGGTTCTAAAAGATTGCATTATACATTGTGCGGTTTTTCTGATTTTAATAGATATGTCCTCGGGTCTAATTCTTCTAGTTCGAGTCGTGTATTCTTCGAGATTAAAGGAGGGGAATATCAACCCGTTCAATTGCAGCATATTAGAGGTGTAATAGCAGGCATTATATTGAATGAATATGGCTGGGATGATGAACTTGGAAAATTGGACGAAGGGGTATACAGTACATCAAGACATGATAACAAAACGGAGCGTTTTGGTAAAAAATATCTTTGGATGGCCTTGTATAAAACAGATGCAATACTTTCTGATTATTGTTCGATTTTGAAAGGTAGATATTATGGTTATGCTATACCCAAACAAGAGGATATGGCATCGAACCCTTATCCATGGTTGACAGACGAATATTCCACAATAGATCCATCACTATTGGGTAGACAAGGAAAAGATTTTATTTCTTTTGAAATCAATCTATTAGAGGAAGTTAATAATGTTGATAATGAGCAATGGATGGATAGAGGGTATCAATTACCAGCTCCGCGGTTGCTCTTGAAAGACAAGGATAATGCAGACTGGGTGCTGCTAACGAGCTATGATGGGCATAAAACAGAAGCAGCAGATGGTACCATCAAAGATCTCTTCTTGTATACCAATGGTGCTTTCATTAAGAAAGAAGAGTTGAGTGCTTACAAGAAATGGGCTAAAGAACAGAACTTCTATGGGCGATGGATGCCTGAATGCCTAAATGGAAGCACGGATTATTTGTGGAATGAATACCCTTGGGCAGAGACCTACATTCGACAACGAGATGAATGGGAAAAGAATCATAGCTACGAAGGTGTAGGTTTTAAATTGCAGTTGTCATATGAGTCTCAATTGCAGGAAAATAGCTTTGGTTTTGATGATTCTAATGAATGGTTGCCCGAAGTATGCATGCCCAACCATCACATTATGGAAGACTTAAAGTTATACACAGCCGAAAGAGGTGTAGTAAGAGATATATCCACCAATGAAATCGTTTCGGTAAATATTCGGGTTGGAAGCTTAAAGGGGTTAGCTATGCGAAAAGACTATTTGTCAGAATATCTTTCACATTCTAGATGTGTTCTTGTCTATTATTCTTTAGGAGAAAAATTAATGAGAGCAAAAAATCATCAAGGTTTAGGAAAGATTTATGACTTATCAGGTTCATATGCATATGAAGATAGATCTATTCTGGCAATAGAGCCTATGCACATCTCCAACGTCTCG","5.50","-24.83","155701","MAMKFPAEIRDRLYATIVPVKCGSNRGTAFFIKDDTLLTARHILGDYAVDNEEVFIQVDNKSITCQIEYIAAEEDPVDVVVLRTDKYKHEQYLPLLSAVFNEERPLCIVGYPKELVNGKELVSIDVHDRIGTTKQEFDTAVVRTDSLELESYKGFSGSPVLNEKGSVIGITLKQLYGGLGYCSVNCIKELLKLHGLKVSEDWQSEDFSPTGRGTSQRQVNNAISYAALRYNADLHIANRELDDKIDLFAVKELQDELYKRLLKSESIALSIKYIGARLSKYKEGDYKDLYSQLENIRANYAEDRSHEGYPTNFFREELPRLEADIDSLYYCESKLLIIDAEAGIGKTHYMCATAQRLSQHINVYLLFGSRFSTQEDFELQLARMLGIGGRSLEELDDAMEDQHSNALIIIDAINEGATNVFWDRELKKLGERVYQLKNLRVIVTYRVGDFEPSDVWGNWRKASMKGYGSQVREAVRKYFAHYKIKDEDGSICYRFLEEFKNPLFLNIFCQVVSQDFSFLRGNFSYVELYRRYIGYRNIIVSDGVDEDSRRHVTEKLLDKLAKYSLFYNSCQDIPREKARLYADQICRNRTWRNSLLYWAIKENLLLETGLDGEGLMFGFQKIGDFLMADAFCKSKMKDSAKVDFVIEKSECQQYPLYKRFLVALFSEWSLMPEFLDRDLLVRRETLLDILLESLHYRSRNNRLVFSWMVKEQVFSLRILRDFINILPEDVFRMAHSRLMNASLVNRDKKWTTSVNSIYDSFLSSNVDDFLEIEITENNNRKYLILLGWMCVSTHPFIRGRALRKLVYLFDKAPELLQEALRLFASCNDMYVVEMIVCSIYGHLLRSRDKNVCAEIAKMMLKIFYVDGKAPSDILVRQWSMLIFQYADYLNGGSAFWREIEVPFIAESPYSLMTSQLEGKETYFGSSDGSKRLHYTLCGFSDFNRYVLGSNSSSSSRVFFEIKGGEYQPVQLQHIRGVIAGIILNEYGWDDELGKLDEGVYSTSRHDNKTERFGKKYLWMALYKTDAILSDYCSILKGRYYGYAIPKQEDMASNPYPWLTDEYSTIDPSLLGRQGKDFISFEINLLEEVNNVDNEQWMDRGYQLPAPRLLLKDKDNADWVLLTSYDGHKTEAADGTIKDLFLYTNGAFIKKEELSAYKKWAKEQNFYGRWMPECLNGSTDYLWNEYPWAETYIRQRDEWEKNHSYEGVGFKLQLSYESQLQENSFGFDDSNEWLPEVCMPNHHIMEDLKLYTAERGVVRDISTNEIVSVNIRVGSLKGLAMRKDYLSEYLSHSRCVLVYYSLGEKLMRAKNHQGLGKIYDLSGSYAYEDRSILAIEPMHISNVS","898514 902542","TIGR ID: PG0840","conserved hypothetical protein","Cytoplasm","This sequence corresponds to gi:34396926 in Genbank.Its nearest neighbor in the NR database is gi:29347987 from Bacteroides thetaiotaomicron VPI-5482","
InterPro
IPR002345
Domain
Lipocalin
PS00213\"[449-462]?LIPOCALIN
InterPro
IPR009003
Domain
Peptidase, trypsin-like serine and cysteine
SSF50494\"[3-171]TPept_Ser_Cys
noIPR
unintegrated
unintegrated
SSF52540\"[286-449]TSSF52540


","BeTs to 3 clades of COG1186COG name: Protein chain release factor BFunctional Class: JThe phylogenetic pattern of COG1186 is -----qvcebrhuj--olinxNumber of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Dec 17 11:36:14 2003","Thu Mar 3 16:03:12 2005","Thu Mar 8 16:39:06 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 3 16:03:12 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Mar 8 16:39:06 MST 2001","34540613","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Thu Mar 3 16:03:12 2005","","1","","7","PG0840" "PG0753","903766","902876","891","ATGCAGCTACACGACATCAAGCAAGTCTCCATCGTGGACTACTTAGCACAAGCTGGCTTTGAAGCAAAGCTCATCAAGGGCGTGAACTATTGGTATTGCTCCCCTCTACGCTCAGAGCTCACGCCTTCGTTTAAAGTCAATGCAGAGCGCAACCAATGGTATGACTTCGCCACAGGAGACCACGGAGACATCATCGACCTCGTTTGCACTCTCCAGCATTGCTCCACAGCAGAAGCTATGAAACGGCTATCTGCGCTGAAGGGTGTACGGCTAGCACCGTCTTTTTCTTTTGGAGGAATAACTCCCGTAAGCCTACAAAGATCCTCCATGGAGCTCATCAGCGTACAAGCTGTGAAGCATCCCAAGCTCTTACTGTATCTCTCGGAGCGAGGGCTACAGCCCTCTGATGCCTCTCCCTTCTTATCGGAAGTCTATTACAAAGTCTCTAGGAAGTGTTTCTTTGCCCTGGGCTTCCCCAATGATGCTGGAGGATGGGAGCTACGCAATCCCTACTTTAAGGGCTGTTTTGCACCCAAGGCCATAACGACAATCAAAGGGACTGATAGTCACAAGCTCCTGCTCTTCGAGGGCTTCATGGACTTTCTCTCTTGGAGGAAACTTCACCCCGAGGGGCAAGCTGAAAGCATCATACTTAATTCGCTCACCCTACTTCCGAAACTCATGCCCACACTTCATCCCTACCCTATGATTGAGAGCCTTCTTGATAATGATGAAGCGGGGGATCGAGCAACGAAACAACTCATCGACGCTGGGCTACCCGTCAAGGATATGCGAGCGTGCTACGCTCCCTATAAAGACATCAACGAGTATCTCACTCTAGCGGAGCAAAGGAAGAAGATCCTCACTCCGCACAAGCGAGGACTGCGTCGA","8.90","7.64","33534","MQLHDIKQVSIVDYLAQAGFEAKLIKGVNYWYCSPLRSELTPSFKVNAERNQWYDFATGDHGDIIDLVCTLQHCSTAEAMKRLSALKGVRLAPSFSFGGITPVSLQRSSMELISVQAVKHPKLLLYLSERGLQPSDASPFLSEVYYKVSRKCFFALGFPNDAGGWELRNPYFKGCFAPKAITTIKGTDSHKLLLFEGFMDFLSWRKLHPEGQAESIILNSLTLLPKLMPTLHPYPMIESLLDNDEAGDRATKQLIDAGLPVKDMRACYAPYKDINEYLTLAEQRKKILTPHKRGLRR","903766 902876","TIGR ID: PG0841","probable PrmN-related protein","Cytoplasm","A few significant hits in gapped BLAST; e.g. residues 1-286 are 36% similar to gb|AAF74445.1|AF238307_9 PrmN1 of Bacteroides uniformis, residues 1-292 are 36% similar to gb|AAF74729.1|AF251288_6 PrmN2 of Bacteroides fragilis, residues 37-286 are 36% similar to gb|AAG17841.1|AF289050_16 TraP of Bacteroides thetaiotaomicron.","
InterPro
IPR002694
Domain
Zinc finger, CHC2-type
PD002988\"[1-83]TZnf_CHC2
noIPR
unintegrated
unintegrated
G3DSA:3.90.580.10\"[26-92]TG3DSA:3.90.580.10
SSF56731\"[110-288]TSSF56731
SSF57783\"[6-91]TSSF57783


","BeTs to 11 clades of COG0358COG name: DNA primase (bacterial type)Functional Class: LThe phylogenetic pattern of COG0358 is amtk-qvcebrhujGPolinxNumber of proteins in this genome belonging to this COG is 2","***** PF01807 (CHC2 zinc finger) with a combined E-value of 8.2e-11. PF01807A 32-80 PF01807B 126-143 PF01807F 241-250","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Mar 8 17:04:13 MST 2001","Thu Mar 8 17:04:13 MST 2001","Thu Mar 8 17:04:13 MST 2001","Thu Mar 8 17:04:13 MST 2001","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 8 17:04:13 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Mar 8 17:04:13 MST 2001","34540614","","","Shoemaker,N.B., Wang,G.R. and Salyers,A.A. 2000. Multiple gene products and sequences required for excision of the mobilizable integrated Bacteroides element NBU1. J. Bacteriol. 182 (4): 928-936. PubMed: 10648516. Pubmed: 10648516.Xu,J., Bjursell,M.K., Himrod,J., Deng,S., Carmichael,L.K.,Chiang,H.C., Hooper,L.V. and Gordon,J.I.A Genomic View of the Human-Bacteroides thetaiotaomicron SymbiosisScience 299 (5615), 2074-2076 (2003)PUBMED 12663928","","Tue Nov 18 15:56:25 2003","1","","7","PG0841" "PG0754","904966","903905","1062","ATGAACCACCCCAATGCACCCTTTCAGCCACCGATGGACATTGATGCTGTGTGGCAACATTCGCTCATCCGTGTGACGGATGCCTTTGCTCTTCCACCCATCGTCTTGCGTGTGGATGACGCTATCATCGGCACGTTGGGCAACTTCAGTGTGTCCACGGGCAAGGCGAAAGCTAAGAAAACGTTCAACGTCTGCGCCTTGGTAGCAGCAGCCCTTGTCAATGGGCAAGTGCTGGAATATCAAGCGAGCTTCCCCGAGAGCAAGCGCAACATTCTCTACTTCGATACAGAGCAAAGTCCTTATCATTGTCAGCTTGTTCTGCAACGCATTCTGGCTTTAGCCGAACTCCCCCTAGACCAACAACCCGAACATTTGCTGTTTAGCCATTTGCGCTCAATAGCTAGTCCCGAAGAGCGTAGAGCCATCATCCGCTATGCCATTTACCACACACCCAATGTTGGGCTAGTCGTCATCGATGGCATTCGCGACTTGATGCACGACATCAACAACTCTGCCGAAGCGACCAATCTTATGGGCGACCTGATGCAATGGACTGGAGAGAGGAACATCCACATTCAAACCGTTCTGCATCTCAACAAAGGAGATGACAATGCTCGTGGACACATAGGCACAGAACTGAACAACAAAACGGAAAGTGTCTTGCTCATCACCAAGGACAACAGTGATGCTGACAGGAGCGTTGTCTCAGCGTCCATCATTCGCTCTAAGCCTTTCCCTCCCTTTGCGTTTAGGCTCACCGAAGTAGACAACATCTGCCTACGCGAGTTAGACACAGACTTCACGGCCAAAGACGCACAGCCTTTCTCCTACCAAGAACTAAGTGGTGAGGAGCATCGCACAGCCTTGCGAGAAGCCTTTGGCCAGGCTTGTGAGTTGGGCTATGGCGACCTATTGAAGCGACTCAGCTCATCATACTTAGGTGTCAGTGGTCGACCTTATGGACAGACGAAGCTCAAAGAATTGCTCCGCTTTCTCGTGAACAAACGTATGCTCGTCAAGGCTAGCAGAGGACGCTATCAGTTCAACCCAGACTTCCATTAC","7.00","0.00","39803","MNHPNAPFQPPMDIDAVWQHSLIRVTDAFALPPIVLRVDDAIIGTLGNFSVSTGKAKAKKTFNVCALVAAALVNGQVLEYQASFPESKRNILYFDTEQSPYHCQLVLQRILALAELPLDQQPEHLLFSHLRSIASPEERRAIIRYAIYHTPNVGLVVIDGIRDLMHDINNSAEATNLMGDLMQWTGERNIHIQTVLHLNKGDDNARGHIGTELNNKTESVLLITKDNSDADRSVVSASIIRSKPFPPFAFRLTEVDNICLRELDTDFTAKDAQPFSYQELSGEEHRTALREAFGQACELGYGDLLKRLSSSYLGVSGRPYGQTKLKELLRFLVNKRMLVKASRGRYQFNPDFHY","904966 903905","TIGR ID: PG0842","hypothetical protein","Cytoplasm","One significant hit in gapped BLAST; e.g. residues 17-354 are 46% similar to gb|AAF74728.1|AF251288_5 unknown of Bacteroides fragilis.","
noIPR
unintegrated
unintegrated
SSF52540\"[90-254]TSSF52540


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Mar 8 17:13:24 MST 2001","Thu Mar 8 17:13:24 MST 2001","Thu Mar 8 17:13:24 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 35-308 are 28% similar to PG1340, and residues 35-347 are 26% similar to PG0762, both hypothetical proteins.","Tue Apr 3 17:06:53 MDT 2001","Thu Mar 8 17:13:24 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Mar 8 17:13:24 MST 2001","34540615","","","","","","1","","7","PG0842" "PG0755","905274","904966","309","ATGACACTACACGAACTCCTCGAAAAGCCCGTATGGAAGATGACGGGTGAAGAACTACTATTCCTAGCCCAACAGGGATCAACGCAACAAGAGGGAGACACACAAGACAAGGCCCCCGCCAAAGAAGAAAGACACTTCGTTTACGGACTATCAGGACTCGCCCGACTCTTCGGATGCAGTCTCCCTACCGCCAACCGTATCAAGCAAAGTGGAAAGATAGACCGAGCCATCACGCAAATCGGTCGTAAGATTATCATTGACGCTGACCTTGCCCTCGAACTCGCTGGGCGCAAAGTAGGAGGACGAAGA","9.90","3.42","11400","MTLHELLEKPVWKMTGEELLFLAQQGSTQQEGDTQDKAPAKEERHFVYGLSGLARLFGCSLPTANRIKQSGKIDRAITQIGRKIIIDADLALELAGRKVGGRR","905274 904966","TIGR ID: PG0843","conserved hypothetical protein","Cytoplasm","This sequence corresponds to gi:34396929 in Genbank.Its nearest neighbor in the NR database is gi:53712573 from Bacteroides fragilis YCH46","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Mar 4 10:04:12 2005","Fri Mar 4 10:04:12 2005","Wed Mar 14 17:57:56 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 14 17:57:56 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Mar 14 17:57:56 MST 2001","34540616","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Fri Mar 4 10:04:12 2005","","1","","7","PG0843" "PG0756","906696","905920","777","ATGGAAGAGGTATCTCCCGACCACAGCACCATCAGTCGATTTCGTTCGGCACTGACAGAGTTGGGGCTCATGGACAAACTATTGGCGCAGTTTAACAAACAACTTTCCCGCCATCACATTTCGGTCAGGGAAGGGGTGCTTGTCGATGCAAGCCTTGTGGAGACGCCGCATAAACCCAACGGAAGCATTACGATTGAAGTCGCAGACGACAGAGAAGACAATCGGAGCGAGGAGGAAAAAGAGGCAGAGGAGGATTATCAAAAACAGGTTGTCCGTCAGCGTAAAGGGACGGATGAAGAAGCCCGTTGGGTTTACAAACAAAAGCGTTATCACTACGGATACAAAAAGCATTGTCTGACCAATGTTCAAGGCATTGTTCAAAAGGTGATAACGACTGCAGCGAACCGCAGTGACACGAAGGAGTTTATTGCGCTATTGCAGGGTGCAAACATACCTCAAGGCTCAGCCGTCTTGGCGGACAAAGGATATGCTTGCGGGGAAAATCGTTCCTACCTGCAAACCCATCACCTTCAAGACGGCATCATGCACAAGGCACAACGCAACAGGGCATTGACCGAGGAAGAGAAGCAACGAAACAAAGCAATCAGTCGGATACGGAGCACCATCGAACGCACCTTTGGCAGTATTCGCCGGTGGTTTCATGGCGGACGATGTCGATACCGGGGACTTGCCAAGACCCATACTCAAAACATTCTTGAAAGCATCGCCTTTAATTTATACAGAACCCCGGGGATAATTATGTCCTCATCTCTAGGA","10.10","10.52","29651","MEEVSPDHSTISRFRSALTELGLMDKLLAQFNKQLSRHHISVREGVLVDASLVETPHKPNGSITIEVADDREDNRSEEEKEAEEDYQKQVVRQRKGTDEEARWVYKQKRYHYGYKKHCLTNVQGIVQKVITTAANRSDTKEFIALLQGANIPQGSAVLADKGYACGENRSYLQTHHLQDGIMHKAQRNRALTEEEKQRNKAISRIRSTIERTFGSIRRWFHGGRCRYRGLAKTHTQNILESIAFNLYRTPGIIMSSSLG","906696 905920","Member of the IS5 family of elements. Reproduces the middle and C-terminal domains of full-length ISPg1 elements (e.g. PG1662).TIGR ID: PG0845","ISPg1 transposase fragment (IS1106-related transposase)","Cytoplasm","PG0756 is equivalent to the previously sequenced AJ130872 and AB015879 in GenBANK. Residues 6-248 are 34% similar to the IS1106 sequence of N.meningitidis (AE002488).","
InterPro
IPR002559
Domain
Transposase, IS4-like
PF01609\"[45-246]TTransposase_11


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 201-259 are 96% similar to a (TRANSPOSASE ORF7 INSERTION SEQUENCE IS1126-LIKE GENE) protein domain (PD187845) which is seen in Q9ZA61_PORGI.Residues 55-200 are 87% similar to a (TRANSPOSASE PLASMID PROTEIN ELEMENT) protein domain (PD004652) which is seen in Q9ZA61_PORGI.Residues 8-54 are identical to a (TRANSPOSASE ORF7 INSERTION SEQUENCE) protein domain (PD187846) which is seen in Q9ZA61_PORGI.","","","","","","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","","","","Fri Feb 16 11:47:25 MST 2001","Fri Feb 16 11:47:25 MST 2001","Thu Dec 21 14:48:40 MST 2000","Thu Dec 21 14:36:40 MST 2000","","Wed Feb 14 11:28:31 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG0756 is virtually identical to PG1087, PG0763, PG1755, PG0686, PG1184, PG1798, PG1230, PG1919, PG0044, PG0689, PG1215, PG1665, PG0839, PG1895, all ISPg1 fragments that reproduce the middle and C-terminal residues of PG1267, PG0169, PG1050, PG1062, PG0740, PG0918, PG1662, PG1422, PG0420, PG0499, PG1099.Also, partial similarities to PG0732, PG0842, PG0883, PG1231, PG0730, PG1159, PG1608.","Fri Feb 16 11:47:25 MST 2001","Wed Feb 14 11:28:31 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 45 to 246 (E-value = 2.2e-40) place PG0756 in the Transposase_11 family which is described as Transposase DDE domain (PF01609)","Thu Jun 14 13:45:08 MDT 2001","","","Hanley,S.A., Aduse-Opoku,J. and Curtis,M.A.A 55-kilodalton immunodominant antigen of Porphyromonas gingivalisW50 has arisen via horizontal gene transferInfect. Immun. 67 (3), 1157-1171 (1999)Maley,J. and Roberts,I.S.Characterisation of IS1126 from Porphyromonas gingivalis W83: a new member of the IS4 family of insertion sequence elementsMicrobiol. Lett. 123 (1-2), 219-224 (1994)Shibata,Y., Hayakawa,M., Takiguchi,H., Shiroza,T. and Abiko,Y.Determination and characterization of the hemagglutinin-associatedshort motifs found in Porphyromonas gingivalis multiple geneproducts. J. Biol. Chem. 274 (8), 5012-5020 (1999)","Knight,A.I., Ni,H., Cartwright,K.A. and McFadden,J.J.Identification and characterization of a novel insertion sequence, IS1106, downstream of the porA gene in B15 Neisseria meningitidis.Mol. Microbiol. 6 (11), 1565-1573 (1992)","Wed Feb 14 11:28:31 MST 2001","Wed Feb 14 11:28:31 MST 2001","1","","7","PG0845" "PG0757","907604","907023","582","ATGAAAGAAAACAAACTCAAAGTATCGTTCTTCGTTCAGGCGAAACGAACCGACAAGAAAGGACTTGTGCCTGTCATCGGGCGCATCTCAGTGGGCAGAACCCATTCAGGCTTCTCCACCAAGTGCAAGACTCCGCTCGCTCTTTGGGACAGCCGAAAACAACGGCTCATCGGCAAGAGTGCAATGGCGGTGTCCGTCAATCAGAAACTCGGTGAATGCACCGCACTCATCCACGCACGCTTTCACGAACTCTGTGAAAGGAAAGAAATTTTTACCGCCACAGACGTGAGGGATGCCTATCAGGGGCAAATCCACCACCAAGCCCTGCTCTTGGAGAGTTTCGGAGAGTATCTCACACAGACAAAAGAGCGCATAGGTATTGACAGAGCTTTGAAGACGTTCAAACTCCGTACCTACCAGCTCTCCCTGCTCCGTGAGTATGTACAAAAGAAGCACAAGGTAAGAGACATTCCCCTTTCACAGTTGGATAAAGCCTTTATGGAGACCTTTGCACGGCGATTGGCGTATATTTTGTTTGTTAATTCATTGTATAATAGGGAGTTATTTTGTATATTTGAGTAT","10.70","17.25","22591","MKENKLKVSFFVQAKRTDKKGLVPVIGRISVGRTHSGFSTKCKTPLALWDSRKQRLIGKSAMAVSVNQKLGECTALIHARFHELCERKEIFTATDVRDAYQGQIHHQALLLESFGEYLTQTKERIGIDRALKTFKLRTYQLSLLREYVQKKHKVRDIPLSQLDKAFMETFARRLAYILFVNSLYNRELFCIFEY","907658 907023","TIGR ID: PG0846","possible transposase","Cytoplasm","One significant hit in gapped BLAST; e.g. residues 7-170 are 29% similar to gb|AAC80279.1| transposase of Bacteroides fragilis.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 7-170 are 29% similar to a (TRANSPOSASE) protein domain (PD214991) which is seen in Q9ZI85_BACFR.","","Thu Jun 14 13:45:59 MDT 2001","","Thu Jun 14 13:45:59 MDT 2001","Thu Jun 14 13:45:59 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:45:59 MDT 2001","Thu Jun 14 13:45:59 MDT 2001","","","Fri Mar 9 08:11:55 MST 2001","Mon Jun 18 08:54:58 MDT 2001","Thu Feb 8 15:28:52 MST 2001","","Mon Jun 18 08:49:24 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG0757 is 22-39% similar to PG1272, PG0735, PG0994, PG0749, and PG1258 all transposases. Residues 167-194 are 100% identical to residues 75-102 of PG1661, a possible IS fragment.","Mon Jun 18 08:52:15 MDT 2001","Fri Mar 9 08:11:55 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jun 18 08:49:24 MDT 2001","","","","Vedantam,G., Novicki,T.J. and Hecht,D.W. 1999. Bacteroides fragilis transfer factor Tn5520: the smallest bacterialmobilizable transposon containing single integrase and mobilization genes that function in Escherichia coli. J. Bacteriol. 181 (8): 2564-2571. PubMed: 10198023.","","Fri Mar 9 08:11:55 MST 2001","1","","7","PG0846" "PG0758","907896","909473","1578","ATGACTGATTATGCCCACAAGATGAGCTTAGATTTACGCATGATTGATTTGGAGAGGTACTCGGATCATATAGACAACAAGGCAAGCCACTGTGCCAAGATGCTCAATGACTATTACCAGAAGTTCGATGCACAGAAGGGAACGCAGTTCGTTTTCTCTGATTTAGGGACTTATAAGCCCGGAGGAGAATTCAATGTCTATTCGGAGATCAAACGTAAGTTGGTAGAAGACTATCACATCCCATCGCATGAAGTACGCTTTATCCAAGAGTGCAAGAACGAGAAAGCCAAGAAAGCAATGGTGGACGCCATGAACCGTGGCGACATCCGCATCATCTTCGGTTCTACCTCGATGTTGGGAACGGGTGTCAATGCCCAGCAACGTGCCGTGGCTATCCACCACCTTGATACACCTTGGCGTCCTTCGGATTTGGAGCAACGCAACGGGCGTGCCGTGCGTAAGGGCAATATGATTGCCAAGGAGTTTGCGGATAACAAGGTCGATGTGATTATCTATGCCGTAGAACGCTCTCTGGATAGTTATAAGTTCAATTTGCTTCACAACAAGCAGTTGTTCATCAATCAGCTCAAGACAAACACATTGGGTAGCCGTACCATCGACGAGGGTTCAATGGATGAGGACGGCGGTATGAATTTTTCAGAGTACGTTGCTGTGCTTTCGGGTAATACAAACCTATTGGAGAAAGCCAAACTGGATAAAAAGATAGCCACCTTAGAGTCTGAGCGAAAGAACTTCCTCCGAGAGCGGGACACTGCAACAGGCAAGTTGGCGGAGATTGATAGTTCCGTGTCTTTCCATTCAGATAAAATCAAAGAGGCGAAAGAGGATTTGGCTTGCTTCGAGAAACGAGTGGAACGGGATGCAGAGGGACTTCCAATCAACAAACTCACAATTAAGGGTGTAGAAGGAAGTACGGACATCAAGGTTATTGCTGCTCGCTTGCAGGAGATCGAGGAGAAAGCACGCACCAAGGGTGAATACAATAAAATCGGTGAGATTTATGGCTTTTCCATCATGGTCAAGACGGAAAACTCTTCCAAAGAGTTGTTCGACTGCTCCTCCAACCGCTTCTTCGTGAAAGGGCAAGAGAGCATCTACTATACCTACAATAACGGGAAGTTGGCTTCTGATCCCAAGCTTGCTTGTCAGAACTTTATCAATGCTCTCGAGCGTATTCCAAAGGTGATTGAATCACACGAGAAAGAAAAGGAAAAGGTTTCTGCAAACAAGGAGGTCTATATGACCATTGCGGGTGGGTCGTGGAAGAAAGAGGACGAGCTTCGCTCTCTCAAAGGACAGGCAGCCGAACTGGATAGAAAAATTGCACTCACGCTCGCACCmCCGGAGGAAGAGAAAGAAACGGAAGAGGAAAAGCAGGTGCAAGAACATGGTATTTCGGGAAAAGAGCCAATACAAGAAACAAGATACTCTGCCGAACCGATTTCACATAAACAAGCTGAAAAGACTCCTCCATCAGAGCAAGTCACTCCCCCCCCCACAAGACAACCGAGGAGTAATGAACCGGGTGGTTATATCGAAACCCAAATGGAGATAGGA","6.40","-4.27","127720","MTDYAHKMSLDLRMIDLERYSDHIDNKASHCAKMLNDYYQKFDAQKGTQFVFSDLGTYKPGGEFNVYSEIKRKLVEDYHIPSHEVRFIQECKNEKAKKAMVDAMNRGDIRIIFGSTSMLGTGVNAQQRAVAIHHLDTPWRPSDLEQRNGRAVRKGNMIAKEFADNKVDVIIYAVERSLDSYKFNLLHNKQLFINQLKTNTLGSRTIDEGSMDEDGGMNFSEYVAVLSGNTNLLEKAKLDKKIATLESERKNFLRERDTATGKLAEIDSSVSFHSDKIKEAKEDLACFEKRVERDAEGLPINKLTIKGVEGSTDIKVIAARLQEIEEKARTKGEYNKIGEIYGFSIMVKTENSSKELFDCSSNRFFVKGQESIYYTYNNGKLASDPKLACQNFINALERIPKVIESHEKEKEKVSANKEVYMTIAGGSWKKEDELRSLKGQAAELDRKIALTLAPPEEEKETEEEKQVQEHGISGKEPIQETRYSAEPISHKQAEKTPPSEQVTPPPTRQPRSNEPGGYIETQMEIG","907896 909473","TIGR ID: PG0847","conserved hypothetical protein","Cytoplasm","The amino terminal residues (1-290) show similarity to four proteins, gb|AAD06506.1 in H.pylori, dbj|BAA87672.1 in A.tumefaciens, ref|NP_066674.1 in H.pylori and a putative methylase, ref|NP_066779.1 in Rhodococcus equi.","
InterPro
IPR001650
Domain
Helicase, C-terminal
PF00271\"[77-155]THelicase_C
SM00490\"[68-155]THELICc
PS51194\"[34-214]THELICASE_CTER
noIPR
unintegrated
unintegrated
SSF52540\"[93-156]TSSF52540


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 61-291 are 33% similar to a (PUTATIVE) protein domain (PD217915) which is seen in Q9ZKK7_BBBBB.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","Tue Feb 6 13:24:24 MST 2001","Tue Feb 6 13:24:24 MST 2001","","","Tue Feb 13 18:13:24 MST 2001","Tue Feb 13 18:13:24 MST 2001","Tue Feb 6 13:24:24 MST 2001","","Tue Feb 13 18:13:24 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG0758 is paralogous to PG1315, a conserved hypothetical protein. Residues 2-504 share 62% identity with PG1315.","Wed Apr 4 11:47:45 MDT 2001","Tue Feb 13 18:13:24 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Fri Mar 9 08:15:28 MST 2001","34540618","","","","","","1","","7","PG0847" "PG0759","910579","909584","996","ATGGAACATACAATAAAAGAGTACCTACATTTAGATCCTGAGTCATTCATGGATCTTGTACAGGCCTCTTCCGAGGATTTGAAAATCCCTGTACAGTTAATAGAGAAAGACTATTATATCTCAGAAATACTTCGTGCATTATCCAAGAGCTCTTATAGTCAGCAAATCGTATTTAAGGGCGGAACGTCCTTATCCAAGGCTTATCTATTGATTGATCGGTTTTCTGAGGATGTGGACTTTGCTGTCATCAGTGAGAATATGAGTGGCAATCAAGTTAAGATGCTTTTATCCAACTTGATGAAAGAGGTAACAGCCAGCTTGACGGAGGATAAATCCTTTTCAGATATATCCAAAGGCTCAAAATATAGGAAGCAAGCCTTCTCCTATGATGCTCAGGTGGGTTTAGATGTGTCTGTAAATCCTATTCCTTCGAGAATTGTTGTGGAAATCAGCGCATTTGCCAATCCTTTTCCTTATGAAAAAAGAATGATAGAGCCATTTGTAACCACATACCTGAAAAAGCGAAATATGGAGGATGTGGTGACTCAATACCACCTTGAACCTTTTGAGTTGAATGTGTTGTCCCTTAGACAAACCTTGTGCGAGAAAACTGTTTCTCTCATTCGATTCTCTATAAGCGAGGATCCGTTGGCATCCTTATCGTCTAAAATCCGCCATTTCTATGATTTGAACGCATTGTTAGCTATCAAAGAATTGGAGGAGTATGTTTGTAGTGAAGAGTTTGTGAATGATGTGGAAACCTTGGTCAAACATGATCAAGAAGCCTTTGACGAGCCTGCCGGATGGAAAGACCTAAAAGATTTGAATCAATCTCCATTAGTGATGGATTTTGATAAGTTATGGGATTCTCTGGCTCCCAAATATGAAGAGAATTTATCGGCAATAGCTTATAGAGAAATCCCGTCTTCAGAAACCATAAAGGCTTCATTCTTGAAAATATTGAAATCTCTGAGAGTGATTGACCTAACAAAAGAG","4.70","-14.85","38040","MEHTIKEYLHLDPESFMDLVQASSEDLKIPVQLIEKDYYISEILRALSKSSYSQQIVFKGGTSLSKAYLLIDRFSEDVDFAVISENMSGNQVKMLLSNLMKEVTASLTEDKSFSDISKGSKYRKQAFSYDAQVGLDVSVNPIPSRIVVEISAFANPFPYEKRMIEPFVTTYLKKRNMEDVVTQYHLEPFELNVLSLRQTLCEKTVSLIRFSISEDPLASLSSKIRHFYDLNALLAIKELEEYVCSEEFVNDVETLVKHDQEAFDEPAGWKDLKDLNQSPLVMDFDKLWDSLAPKYEENLSAIAYREIPSSETIKASFLKILKSLRVIDLTKE","910579 909584","TIGR ID: PG0848","hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR014942
Family
Domain of unknown function DUF1814
PF08843\"[36-302]TDUF1814


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Mar 9 08:16:55 MST 2001","","Fri Mar 9 08:16:55 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Mar 9 08:16:55 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Fri Mar 9 08:16:55 MST 2001","34540619","","","","","","1","","7","PG0848" "PG0760","911334","910567","768","TTGTTGTGTAAACACTTGCATTTACACAACAAAACGACTACCTTTGCAAAAAGAACAAGCAGCATGACAAGTAAGAGTATTAAAAACAAGATTGCAAGTTTTGAGATGGGAAAAGTTTTCCGACTGGAAGACTTAGGACTTTTTCGTACCGAGCAAAATGCGGCTGTGGTTGCTTTAGGAAGACTGGTTCAAGAAGGAGAGATAAAACGACTCAGCCCGGGGACCTACTACAAACCTAAGCAAACTCGATTTGGTGTTGTCGGTCCATCTATGGAAGAACGATTCCGTGACTTACTATATGACAACGATACCCCCATAGGCTATCTGACAGGGTTCTATGCATTCAACTTGCTTGGATTGACAACCCAACAGTCTGCAACTCTTGAAGTAGGAACCAACTTTCCTAAACGAAACGGAAAACGAGGGATATATGCTATCCGTTTTGTATTACAGAAAAATCCTATTAGCCGAGATAATATCGAAATGTTACGTCTACTGGACTGCTTGAAATGGATTAAGAAGATACCGGATACGACTACCGACAAGTCGTATATTCTCCTAAAGAAAAAAGTCAATGAATATGCGAAGGAGGAGCAAAAGCAGTTGGTTGAGCTTGCATTGAAATACTCTCCACTCACGCGAGCTTTGTTGGGATCTATGCTAACCGACGAATTACTTGCGACTACATTATATCAAACATTAAGTCCGCTTACACGATTTAGAATCGGACTATCACCAAATTTAGTTTCTAATCAATGGAACATACAA","10.60","16.63","29257","LLCKHLHLHNKTTTFAKRTSSMTSKSIKNKIASFEMGKVFRLEDLGLFRTEQNAAVVALGRLVQEGEIKRLSPGTYYKPKQTRFGVVGPSMEERFRDLLYDNDTPIGYLTGFYAFNLLGLTTQQSATLEVGTNFPKRNGKRGIYAIRFVLQKNPISRDNIEMLRLLDCLKWIKKIPDTTTDKSYILLKKKVNEYAKEEQKQLVELALKYSPLTRALLGSMLTDELLATTLYQTLSPLTRFRIGLSPNLVSNQWNIQ","911334 910567","TIGR ID: PG0849","hypothetical protein","Cytoplasm","No hit found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","","","Fri Mar 9 08:17:49 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Mar 9 08:17:49 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Fri Mar 9 08:17:49 MST 2001","34540620","","","","","","1","","7","PG0849" "PG0761","911670","911365","306","ATGCCATACTTAGACTTTAATCCCGACGATGTTTGGCAGAAACATCTGTTTGAGCGCCTGATGTGTGTGGAGGAGAAACTTGATCAAATGCTTGTTTTACAGGAACAAGTCATAAGCACCTCAGTTCGACCTCCTTTGAAGCCTGAATACTTGGACATCATAGATGTTTCTAAAATCCTAAAGGTGGAGCAGAAGACCATTTACAACTGGGTTTGGGCAGGGAGGATACCCTATCTCAAAGCCAACGGACGTTTGCTGTTTCTGCGTGAAGAGATCGATGAGATGCTGCGAAAACGTGATGAATGG","5.00","-2.81","12391","MPYLDFNPDDVWQKHLFERLMCVEEKLDQMLVLQEQVISTSVRPPLKPEYLDIIDVSKILKVEQKTIYNWVWAGRIPYLKANGRLLFLREEIDEMLRKRDEW","911670 911365","TIGR ID: PG0850","hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR009061
Domain
Putative DNA binding
SSF46955\"[49-99]TPutativ_DNA_bind


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Mar 9 08:18:50 MST 2001","","Fri Mar 9 08:18:50 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Mar 9 08:18:50 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Fri Mar 9 08:18:50 MST 2001","34540621","","","","","","1","","7","PG0850" "PG0762","912824","911661","1164","GTGGAACACTTGGAAAAATACAAGGTATTGAACCTCTCCCTGCCACTAAGCGGCGCAAAGAGTGAAAAGGACATCTCGGACTTCTTCGCTTTAGGAAATGGAGCAAATGATTTGAAAGATTTGCTTGCCAAGATGTTCTCAGACATGTACAGTCAAACGATGATGATGCTTCGCTCGTGTGAGATAGATTATGACAATCCTCCTGATGCCTCAAAATCGGTTGTGGCAGTCAATGGCGTTCCTCTTGGAACGCAGGATAACCTCTTTTGCATCACAGGAGGCGAGGGGACAGGAAAAAGCAACTACATTTCCGCAATCCTCTCCGGCACGTTAAGAGAGGAGAGGCTGTCTGCTGAACAAACGTTGGGATTGGAGATTACTGCCAATCCCAACGGCTTAGCCGTCCTGCACTACGATACAGAACAATCGGAGGCTCAATTACACAAGAACTTGGGACGGACACTTCGCCGTGCTTCACTTACGGCAGTCCCCGAGTTCTACCACTCTCTGTATCTGGCTTCACTTTCCCGAAAAGACCGACTGAAACTTATCCGTGAAAGTATGGACTTGTTCCATCACAAGCACGGAGGCATTCACCTTATGATCATTGACGGAATCGCAGACTTGATACGCTCGGCCAACGATGAAAGCGAAAGCATAGCCATCGTGGATGAGATGTACCGCTTAGCAGGCATCTATAACACCTGCATTATCTGTGTATTGCATTTTGTCCCTAATGGGATTAAACTCCGTGGACATATTGGCTCGGAACTGCAACGCAAGGCAGCGGGTATTCTATCCATAGAAACTGACGACAATCCCGAATACTCTGTTGTCAAGGTTATAAAGGTACGTGACGGCAGTCCTCTCGATGTGCCGATGATGCTTTTCGGCTGGGATAAGGAGGCTGATATGCACGTCTATCGTGGCGAAAAGTCGAAAGAAGACAAGGAGAAACGAAAGACCGATGAACTGATAGCCGTTGTCAAGGAAGCGTTCCGAAACAAAATCACACTTTCCTATCAAGAACTTTGTGAGGTTTTGATGCGAGAAATGGAAATCAAGGATCGCACGGCAAAGAAGTACATCGCCTATATGAAAGAACAACGTATCTTGGCACAAGATAGCAATGGTAACTACCAAAAAGGGGAACTATGCCATACT","6.30","-5.36","43585","VEHLEKYKVLNLSLPLSGAKSEKDISDFFALGNGANDLKDLLAKMFSDMYSQTMMMLRSCEIDYDNPPDASKSVVAVNGVPLGTQDNLFCITGGEGTGKSNYISAILSGTLREERLSAEQTLGLEITANPNGLAVLHYDTEQSEAQLHKNLGRTLRRASLTAVPEFYHSLYLASLSRKDRLKLIRESMDLFHHKHGGIHLMIIDGIADLIRSANDESESIAIVDEMYRLAGIYNTCIICVLHFVPNGIKLRGHIGSELQRKAAGILSIETDDNPEYSVVKVIKVRDGSPLDVPMMLFGWDKEADMHVYRGEKSKEDKEKRKTDELIAVVKEAFRNKITLSYQELCEVLMREMEIKDRTAKKYIAYMKEQRILAQDSNGNYQKGELCHT","912824 911661","TIGR ID: PG0851","hypothetical protein","Cytoplasm","One weak hit in gapped BLAST; e.g. residues 52-380 are 23% similar to gb|AAF74728.1|AF251288_5 unknown of Bacteroides fragilis.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Mar 8 17:19:27 MST 2001","Thu Mar 8 17:19:27 MST 2001","Thu Mar 8 17:19:27 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 2-380 are 66% similar to PG1340, a hypothetical protein. Similarities are also seen to PG0754, a hypothetical protein.","Thu Mar 8 17:19:27 MST 2001","Thu Mar 8 17:19:27 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Mar 8 17:19:27 MST 2001","34540622","","","","","","1","","7","PG0851" "PG0763","913317","914093","777","ATGGAAGAGGTATCTCCCGACCACAGCACCATCAGTCGATTTCGTTCGGCACTGACAGAGTTGGGGCTCATGGACAAACTATTGGCGCAGTTTAACAAACAACTTTCCCGCCATCACATTTCGGTCAGGGAAGGGGTGCTTGTCGATGCAAGCCTTGTGGAGACGCCGCATAAACCCAACGGAAGCATTACGATTGAAGTCGCAGACGACAGAGAAGACAATCGGAGCGAGGAGGAAAAAGAGGCAGAGGAGGATTATCAAAAACAGGTTGTCCGTCAGCGTAAAGGGACGGATGAAGAAGCCCGTTGGGTTTACAAACAAAAGCGTTATCACTACGGATACAAAAAGCATTGTCTGACCAATGTTCAAGGCATTGTTCAAAAGGTGATAACGACTGCAGCGAACCGCAGTGACACGAAGGAGTTTATTGCGCTATTGCAGGGTGCAAACATACCTCAAGGCTCAGCCGTCTTGGCGGACAAAGGATATGCTTGCGGGGAAAATCGTTCCTACCTGCAAACCCATCACCTTCAAGACGGCATCATGCACAAGGCACAACGCAACAGGGCATTGACCGAGGAAGAGAAGCAACGAAACAAAGCAATCAGTCGGATACGGAGCACCATCGAACGCACCTTTGGCAGTATTCGCCGGTGGTTTCATGGCGGACGATGTCGATACCGGGGACTTGCCAAGACCCATACTCAAAACATTCTTGAAAGCATCGCCTTTAATTTATACAGAACCCCGGGGATAATTATGTCCTCATTTGTAGGA","10.10","10.52","29697","MEEVSPDHSTISRFRSALTELGLMDKLLAQFNKQLSRHHISVREGVLVDASLVETPHKPNGSITIEVADDREDNRSEEEKEAEEDYQKQVVRQRKGTDEEARWVYKQKRYHYGYKKHCLTNVQGIVQKVITTAANRSDTKEFIALLQGANIPQGSAVLADKGYACGENRSYLQTHHLQDGIMHKAQRNRALTEEEKQRNKAISRIRSTIERTFGSIRRWFHGGRCRYRGLAKTHTQNILESIAFNLYRTPGIIMSSFVG","913317 914093","Member of the IS5 family of elements. Reproduces the middle and C-terminal domains of full-length ISPg1 elements (e.g. PG1662).TIGR ID: PG0852","ISPg1 transposase fragment (IS1106-related transposase)","Cytoplasm","PG0763 is approximately equivalent to the previously sequenced AJ130872 in Gen BANK. See also AB015879. Residues 6-248 are 34% similar to an IS1106 transposase from N. meningitidis (AE002488).","
InterPro
IPR002559
Domain
Transposase, IS4-like
PF01609\"[45-246]TTransposase_11


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 201-259 are identical to a (TRANSPOSASE ORF7 INSERTION SEQUENCE IS1126-LIKE GENE) protein domain (PD187845) which is seen in Q9ZA61_PORGI.Residues 55-200 are 87% similar to a (TRANSPOSASE PLASMID PROTEIN ELEMENT) protein domain (PD004652) which is seen in Q9ZA61_PORGI.Residues 8-54 are identical to a (TRANSPOSASE ORF7 INSERTION SEQUENCE) protein domain (PD187846) which is seen in Q9ZA61_PORGI.","","","","","","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","","","","Fri Feb 16 11:42:00 MST 2001","Fri Feb 16 11:42:00 MST 2001","Wed Jan 3 12:50:58 MST 2001","Wed Jan 3 12:04:28 2001","","Wed Feb 14 11:11:11 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG0763 is virtually identical to PG1087, PG1184, PG1755, PG0686, PG0756, PG1798, PG1230, PG1919, PG0044, PG0689, PG1215, PG1665, PG0839, PG1895, all ISPg1 fragments that reproduce the middle and C-terminal residues of PG1267, PG0169, PG1050, PG1062, PG0740, PG0918, PG1662, PG1422, PG0420, PG0499, PG1099.Also, partial similarities to PG0732, PG0842, PG0883, PG1231, PG0730, PG1159, PG1608.","Fri Feb 16 11:44:22 MST 2001","Wed Feb 14 11:11:11 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 45 to 246 (E-value = 2.2e-40) place PG0763 in the Transposase_11 family which is described as Transposase DDE domain (PF01609)","Thu Jun 14 13:46:37 MDT 2001","","","Hanley,S.A., Aduse-Opoku,J. and Curtis,M.A.A 55-kilodalton immunodominant antigen of Porphyromonas gingivalisW50 has arisen via horizontal gene transferInfect. Immun. 67 (3), 1157-1171 (1999)Maley,J. and Roberts,I.S.Characterisation of IS1126 from Porphyromonas gingivalis W83: a new member of the IS4 family of insertion sequence elementsMicrobiol. Lett. 123 (1-2), 219-224 (1994)Shibata,Y., Hayakawa,M., Takiguchi,H., Shiroza,T. and Abiko,Y.Determination and characterization of the hemagglutinin-associatedshort motifs found in Porphyromonas gingivalis multiple geneproducts. J. Biol. Chem. 274 (8), 5012-5020 (1999)","Knight,A.I., Ni,H., Cartwright,K.A. and McFadden,J.J.Identification and characterization of a novel insertion sequence, IS1106, downstream of the porA gene in B15 Neisseria meningitidis.Mol. Microbiol. 6 (11), 1565-1573 (1992)","Wed Feb 14 11:14:40 MST 2001","Wed Feb 14 11:14:40 MST 2001","1","","7","PG0852" "PG0763.1","914477","914229","249","TTGCTATTTTATCGCACCACGAAGGTAGCGAAATTTCCGCATATGCGGAAATATTTTTTCGTATATACGGAAATAAATTTGTGTATATACGGAAATAAATTTTCTTATATACGGAAATTTCCTTCCCTATATACGCAACGTTGTTATACTCCTTTCGTAATAGATAGGGTACCTATGTATTTAGGATTATCCGATTATCCGATTCTCCAAATACCACCCGAATATTGCCATCTTGAGACCTTTGAAAAA","","","10151","LLFYRTTKVAKFPHMRKYFFVYTEINLCIYGNKFSYIRKFPSLYTQRCYTPFVIDRVPMYLGLSDYPILQIPPEYCHLETFEK","","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No hit found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","","","Fri Mar 9 08:20:47 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Mar 9 08:20:47 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Fri Mar 9 08:20:47 MST 2001","","","","","","","1","","7","" "PG0764","914526","915008","483","ATGATTAAGATTAAAGCAATCGAAAGAAAGGCCGGATTCGGCAAGACCAGCAAAACGCTTTGGTACCCTGCAATCCACTTGCATTCGGATGTGAAGTTCGAGGAGTTTATCGAACTCGTGTCGGATGAGACGACCGTCTCCTCGGCGGATATCAAGGCGGTCTTTGACCGCGCTGCCAAAGTGCTCATCCGTCTGCTTCAGGACGGCAAGAGCATTGATTGTGGCGACATGGGTACCTACCGCCCCAGCATTACGGCGAAGGCCGGTTCGGGCGTTGATAGTGCCGACAAGGTGACGGTGGAGCTTGTGGACAAGGCGAAGGTCATCTATACGCCTCGTATGAAGGTCAAAACTGCTCTCAAGGGCGTCCGTATGGAGCGTGCCGAGCGTGTCCTTGATGTGCCTTACGCCTCTTCGATCAAGCCGAATGAGAACAACAGCGGCGGATCTTCGTCCTCGGACAACAACGGACACGCCGGCCTG","9.90","4.67","17443","MIKIKAIERKAGFGKTSKTLWYPAIHLHSDVKFEEFIELVSDETTVSSADIKAVFDRAAKVLIRLLQDGKSIDCGDMGTYRPSITAKAGSGVDSADKVTVELVDKAKVIYTPRMKVKTALKGVRMERAERVLDVPYASSIKPNENNSGGSSSSDNNGHAGL","914526 915008","TIGR ID: PG0853","hypothetical protein","Periplasm, Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR005902
Family
Putative DNA-binding protein, HU-related
TIGR01201\"[1-161]THU_rel
InterPro
IPR010992
Family
IHF-like DNA-binding
SSF47729\"[31-125]TIHF_like_DNA_bnd


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Mar 9 08:27:54 MST 2001","","Fri Mar 9 08:27:54 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","PG0764 is identical to PG1882, a hypothetical protein. Weaker similarities are seen to PG1896, PG0306, PG1221, PG0200 and PG1068, all of which are hypothetical proteins.","Tue Apr 3 17:18:46 MDT 2001","Fri Mar 9 08:27:54 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Fri Mar 9 08:27:54 MST 2001","34540623","","","","","","1","","7","PG0853" "PG0765","915012","915827","816","TTGTACCCAATCAAAATTATATATGTCTATAAAGCAATGTTGGATAAAGTAATTGATAAGGCTGGTGGTGTCCTTACAGAGGCTTATGGCGATGTCGTTAAGCCTGTCCTGAAGCCTATAGGCGAAGTCCTGGGGTTTCTTCCTAGAAGTATAAAATGTTTATTACAAGGTTGGGAAAAGTGGATAATCAATGGGGAAGAATCTATAAGATTGACCTCAGAGGCAATAAGAAAGAAGATCGAAGCAACCCCAGCAGAGAGATTAACAGAGCCAGAACCTTATGTTGTCGTTCCAGCTATACAACAATTAGGCTATTCTCATAGTAGTGAGGAGCTTCGAGAGTTGTATGCGAATCTCATTGTCTCTTCAATGGATGTCGAAAAGAAGGGGCTAGTCCACCCCGCTTTTGTTGATATTCTCAAAAAGCTAACCCCAGATGAGGCAAAGATTATCCAATACTTCAAGGGCAGAGATTTTATTGAGTACTTAGATCTTCGAGCTTATATTAAGGAAGAAGAAGGAGGAGGCTTTAGGACCATCGCAGATCATAAAACCTTACTAAGTGATGAAGTAAACTTTTTTATGCCGGATAATGAACTTGCTTATCTTCAAAATCTTGTCTGCCTCGGAATTTTAAAAGATTGTGAGGGAACGTTTACGGTAATAGAAGATAATTATAAACTGATTGAAAATAAGTTGGGACTAGAAAGTCTTCGAAATCAGTATGTCCCAGAACAGTTTAGTTCAATTCGTTCGGAGAAATCTTTTTACCAAGTAACAGATTTTGGAAGAAATTTCATCAACACTGTTACAGAG","4.90","-8.39","31056","LYPIKIIYVYKAMLDKVIDKAGGVLTEAYGDVVKPVLKPIGEVLGFLPRSIKCLLQGWEKWIINGEESIRLTSEAIRKKIEATPAERLTEPEPYVVVPAIQQLGYSHSSEELRELYANLIVSSMDVEKKGLVHPAFVDILKKLTPDEAKIIQYFKGRDFIEYLDLRAYIKEEEGGGFRTIADHKTLLSDEVNFFMPDNELAYLQNLVCLGILKDCEGTFTVIEDNYKLIENKLGLESLRNQYVPEQFSSIRSEKSFYQVTDFGRNFINTVTE","915012 915827","TIGR ID: PG0854","conserved hypothetical protein","Cytoplasm","This sequence corresponds to gi:34396938 in Genbank.Its nearest neighbor in the NR database is gi:27361875 from Vibrio vulnificus CMCP6.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Mar 4 10:07:55 2005","Fri Mar 4 10:07:55 2005","Fri Mar 9 08:31:22 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Mar 9 08:31:22 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Fri Mar 9 08:31:22 MST 2001","34540624","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Fri Mar 4 10:07:55 2005","","1","","7","PG0854" "PG0766","916332","917234","903","ATGGATGAAAATCTACGACAATTAGCAGAGAGCATACTCACAGATCTCACCCAAGATGCTCCGATAGCAAATACCATGCTGAAGGCCAAAGTCTTTGCATCCAAGAAGAATGATAAGGATTTACTGTCTTGGATAGAGCATGAATTGAATGGATATGAGGAGAACCTTCCGAAATACAGATTACTTGATGCTGGGGTAAAGGTGGATATACATCGTGGATTCCAAGAAGTACTGGGCTATAACTACCCTATGGGCATGGTAAAAGACGAGAAAGTCAGAGAGCGCTTGTTGCATCTACCTATCCATGGATCAATATCTGAAGTTGAAGAGCTCAGTACGAAGTCTGGTGAAGGAACCATACACATTGATATACCGATAGAAATATGGTATCATCACATGAGACACTGCATCAACGGCGATATCCAGCGAGCATATCAATTTGCTACAGTGGCCTCTGTCAAGCAAATCATGGTAAAAATAAAGTCTTTATTGATAGATTATTTCCTCAAAATAGACAAGGGAGAGTCGCTTTCCTTCCTCTCACTCATAAAAAAAGAAACGCCAACAATGCAGATAATAGCAGGAATCGTAAACACCGGCTCGGGGAATGTAACAGCAAATGGTGCAACCATAATATCTGGTGCCAATATCAGCATAAACAAAGATAATCTTCCAGAGTTACAACGTATCTTGTCGTGCATTGAAGAAATAATGAAATCTCTTAATTCGGACGACTATAAAGAGATATCGGAAGAGTTGAAAACTGAAATAGAAAAGGATAGCCCTTCACGGAATATCATCAAAAGAGGGCTTCAAGCCATTAATGGCATAGCATCTGGCATCGTTTCTGGAGTAATAGCTAATCAGGTCTCGCCACTCGTGACATCGGCAATAGCATTATTA","5.90","-5.15","33452","MDENLRQLAESILTDLTQDAPIANTMLKAKVFASKKNDKDLLSWIEHELNGYEENLPKYRLLDAGVKVDIHRGFQEVLGYNYPMGMVKDEKVRERLLHLPIHGSISEVEELSTKSGEGTIHIDIPIEIWYHHMRHCINGDIQRAYQFATVASVKQIMVKIKSLLIDYFLKIDKGESLSFLSLIKKETPTMQIIAGIVNTGSGNVTANGATIISGANISINKDNLPELQRILSCIEEIMKSLNSDDYKEISEELKTEIEKDSPSRNIIKRGLQAINGIASGIVSGVIANQVSPLVTSAIALL","916332 917234","TIGR ID: PG0856","conserved hypothetical protein","Cytoplasm","This sequence corresponds to gi:34396940 in Genbank.Its nearest neighbor in the NR database is gi:26248985 from Escherichia coli CFT073.","
noIPR
unintegrated
unintegrated
PD016517\"[140-258]TYB59_BACCR_Q81GN2;


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Mar 4 10:12:31 2005","Fri Mar 4 10:12:31 2005","Fri Mar 9 08:33:09 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Mar 9 08:33:09 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Fri Mar 9 08:33:09 MST 2001","34540626","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Fri Mar 4 10:12:31 2005","","1","","7","PG0856" "PG0767","917461","917682","222","ATGCAAGCGAGGACAATCATAGCGCAGTATGTGAAGGAGATGCGCAAGAAATATAAACTGACACAAGTAGACCTCTCCGAGAAAGCAGGAGTGGGGCTACGCTTTGTGCGTGAACTAGAGCAAGGCAAGACCACGCTTCGCCTTGATAAGGTCAATAAAGTCTTCGAACTCTTCGGTTCGGAGTGTGGTCCCGTGCCGATGAAACGAGAAGGAGATGACGTA","10.20","3.94","8487","MQARTIIAQYVKEMRKKYKLTQVDLSEKAGVGLRFVRELEQGKTTLRLDKVNKVFELFGSECGPVPMKREGDDV","917389 917682","TIGR ID: PG0857","hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR001387
Domain
Helix-turn-helix type 3
PF01381\"[11-65]THTH_3
SM00530\"[10-65]THTH_XRE
PS50943\"[11-65]THTH_CROC1
InterPro
IPR010982
Domain
Lambda repressor-like, DNA-binding
SSF47413\"[7-65]TLambda_like_DNA
noIPR
unintegrated
unintegrated
G3DSA:1.10.260.40\"[7-59]TG3DSA:1.10.260.40


","BeTs to 3 clades of COG1396COG name: Predicted transcriptional regulatorsFunctional Class: KThe phylogenetic pattern of COG1396 is --T--qV-EBR---------xNumber of proteins in this genome belonging to this COG is 5","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 13:47:32 MDT 2001","","Thu Jun 14 13:47:32 MDT 2001","Thu Jun 14 13:47:32 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:47:32 MDT 2001","Thu Jun 14 13:47:32 MDT 2001","","","Fri Mar 9 08:36:58 MST 2001","","Fri Mar 9 08:36:58 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Jul 23 17:24:52 2008","No significant hits to the PDB database (E-value < E-10).","","","Residues 11 to 65 (E-value = 1e-07) place PG0767 in the HTH_3 family which is described as Helix-turn-helix (PF01381)","Mon Jun 18 09:04:52 MDT 2001","34540627","","","","","","1","","7","PG0857" "PG0768","917682","918014","333","ATGAAACAGGCAATTGTTTATTGGAAGACACTCAAAGCAGGCATTCTCACAGAAAGTGATGAGGGCTATTCCTTTGCTTACGACAAGGACTATCTGACTATGCCCGAAGCTCAAGGCATAAGCCTAACAATGCCTTTGCGAGAAGAACCTTTCCAAAGCAATATGCTTCATCCATTTTTTGACGGACTTATCCCTGAGGGATGGCTGTTAGATATTGCTCAGAAGAATTGGAAGATAGACTCAAGGGATCGAATGGCTTTACTACTGGCTTGTTGCCGAGACTGCATTGGAGCGGTAAGTATCGAACCCCTAAATACGACTGAAGATGACGAA","4.20","-8.91","12663","MKQAIVYWKTLKAGILTESDEGYSFAYDKDYLTMPEAQGISLTMPLREEPFQSNMLHPFFDGLIPEGWLLDIAQKNWKIDSRDRMALLLACCRDCIGAVSIEPLNTTEDDE","917682 918014","TIGR ID: PG0858","conserved hypothetical protein (possible hip protein)","Cytoplasm","One significant hit and several weak hits in gapped BLAST; e.g. residues 14-102 are 37% similar to pir||G64011 hypothetical protein of Haemophilus influenzae (strain Rd KW20), residues 1-107 are 29% similar to gb|AAA56878.1| hipA of Escherichia coli, residues 1-107 are 29% similar to dbj|BAA15187.1| HipA protein of Escherichia coli.","
noIPR
unintegrated
unintegrated
PD563641\"[14-102]TPD563641


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 14-102 are 37% similar to a (HYPOTHETICAL PROTEIN HI0666) protein domain (PD070486) which is seen in Y666_HAEIN.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Apr 6 14:47:51 MDT 2001","Fri Mar 9 08:45:57 MST 2001","Fri Mar 9 08:45:57 MST 2001","","Fri Mar 9 08:45:57 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Mar 9 08:45:57 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Fri Mar 9 08:45:57 MST 2001","34540628","","","","","","1","","7","PG0858" "PG0769","918007","918942","936","ATGACGAATAGATGCCTATACTGCTACGAACCTTTGGTTGATGGAGAGATGGATTACCATGCCAAGTGTTGTCGCAAATTGTTTGGGACGCCCCAAGCTCCTATATTGCCTTATACAAGTAGCGAAGTACGAGCGTTGGCTGACGAGGTCGTTCGTTCGCAAACCACAGTGACAGGAGTACAACCCAAGCTATCTCTCGACTTTGACCAAATGAGCAATTCGCCCAAGCGATTTACCATCGTGGGCTTGTGGGGACGGTTTATTCTTAAACCTCAAACAGAGCGTTATTCGCATCTCCCTGAATTGGAGGATGTGTCAATGCACCTTGCAGAGATTGCCAAGATAGAAACAGTTCCTCATGGACTGATGCGATTTAGCGATGGCGAACTATGCTATATCACTCGTCGCATAGACCGAACAGGGCAAGGGGAAAAGCTCCCAATGGAAGATATGTGCCAGCTCTCAGAGCGTCTGACCGAATATAAATACAAAGGCTCACACGAGCAGGTAGCCAAGCTGATCTCCAAGTATAGCTCTGTGCCAAAACTTGATCTTGTCAAGTACTGGGAGCAGGTACTCTTTTCGTGGCTGATAGGTAATGCCGATATGCACCTCAAGAATTACTCGCTCTATGCTCCAGAGGGAAATGAATATCAACTCACTCCAGCTTACGACCTGCTGTCTACGGCACTTGTTATTCCTGAGGATACAGAAGAACTTGCATTGACCCTCTGTGGCAAAAAGCGCAAACTCACTCGCCAACACTTCCTCGAAGCGATGACAGCCTCAGGACTAGATGAGAAAGTGTGTGACAATATTTTCGCTCGCTTCCAACACATCCTCCCCGAATGGGAAGCCTGCATCCGTCAGAGCTTCTTACCGACAGAGATGCAGAGACAATACATCGAATTTATTCTCCTCAAATTCTCTCAAATC","6.10","-4.48","36088","MTNRCLYCYEPLVDGEMDYHAKCCRKLFGTPQAPILPYTSSEVRALADEVVRSQTTVTGVQPKLSLDFDQMSNSPKRFTIVGLWGRFILKPQTERYSHLPELEDVSMHLAEIAKIETVPHGLMRFSDGELCYITRRIDRTGQGEKLPMEDMCQLSERLTEYKYKGSHEQVAKLISKYSSVPKLDLVKYWEQVLFSWLIGNADMHLKNYSLYAPEGNEYQLTPAYDLLSTALVIPEDTEELALTLCGKKRKLTRQHFLEAMTASGLDEKVCDNIFARFQHILPEWEACIRQSFLPTEMQRQYIEFILLKFSQI","918007 918942","TIGR ID: PG0859","conserved hypothetical protein","Cytoplasm","Several significant hits to hypothetical proteins in gapped BLAST; e.g. residues 56-286 are 29% similar to sp|P55412|Y4DM_RHISN hypothetical 45.3 KD protein Y4DM of Rhizobium sp. NGR234, residues 56-269 are 28% similar to gb|AAK07491.1| hypothetical protein of IncJ plasmid R391, residues 34-230 are 25% similar to pir||F64011 hypothetical protein of Haemophilus influenzae (strain Rd KW20).","
InterPro
IPR012893
Domain
HipA-like, C-terminal
PF07804\"[145-225]THipA_C
InterPro
IPR012894
Domain
HipA-like, N-terminal
PF07805\"[56-139]THipA_N


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 184-286 are 38% similar to a (PROTEIN PLASMID Y4DM Y4ME) protein domain (PD024259) which is seen in Y4DM_RHISN.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Mar 9 08:58:01 MST 2001","Fri Mar 9 08:58:01 MST 2001","Fri Mar 9 08:58:01 MST 2001","","Fri Mar 9 08:58:01 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Mar 9 08:58:01 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Fri Mar 9 08:58:01 MST 2001","34540629","","","","","","1","","7","PG0859" "PG0770","919030","919332","303","ATGGGGACGAAACTCCCTCGGAAACTGGAGCAAAAAATGCAGATTGTCGGCGAGCAGATCAAGCTTGCCCGACTGCGTCGTAATCTAAGCATCGCTCAGATTGCTGAGCGAGCGACCTGTTCGCCTTTAACTGTCGGTCGCATCGAGAAAGGTTCCCCAACAGTGGCGATAGGCATCTACGCCCGAGTGCTCTATGCCCTCCAACTCGAGGATGACTTACTTCACCTAGCGGGTGCAGACGAACTTGGTCGTCGCCTGCAAGACCTCTCCCTCATCAATCGCCGTCGTGCCTCTAAAAAAGGC","11.20","9.18","11244","MGTKLPRKLEQKMQIVGEQIKLARLRRNLSIAQIAERATCSPLTVGRIEKGSPTVAIGIYARVLYALQLEDDLLHLAGADELGRRLQDLSLINRRRASKKG","919015 919332","TIGR ID: PG0860","hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR001387
Domain
Helix-turn-helix type 3
PF01381\"[20-74]THTH_3
SM00530\"[19-74]THTH_XRE
PS50943\"[20-74]THTH_CROC1
InterPro
IPR010982
Domain
Lambda repressor-like, DNA-binding
SSF47413\"[11-76]TLambda_like_DNA
noIPR
unintegrated
unintegrated
G3DSA:1.10.260.40\"[5-92]TG3DSA:1.10.260.40


","BeTs to 5 clades of COG1396COG name: Predicted transcriptional regulatorsFunctional Class: KThe phylogenetic pattern of COG1396 is --T--qV-EBR---------xNumber of proteins in this genome belonging to this COG is 5","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 13:48:14 MDT 2001","","Thu Jun 14 13:48:14 MDT 2001","Thu Jun 14 13:48:14 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:48:14 MDT 2001","Thu Jun 14 13:48:14 MDT 2001","","","Fri Mar 9 08:59:17 MST 2001","","Fri Mar 9 08:59:17 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Mar 9 08:59:17 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 20 to 74 (E-value = 7.8e-06) place PG0770 in the HTH_3 family which is described as Helix-turn-helix (PF01381)","Mon Jun 18 09:07:23 MDT 2001","34540630","","","","","","1","","7","PG0860" "PG0771","919389","922868","3480","ATGCTATTACGCAATACCTTAATTGATAATTCTTCGCCCGAACTTTCTATGAGTTCCTGTCTGAAACAATGTTTTAGATTGGATTGGGTCAATCGAGTTCGAATAGCCACGGGATATTGGGATGTCCCAGGTATGGCACTTGTGATAAAGGAACTATCTGCCTTTCTAGAGAGAGAGGGAACTATGTTGCAGATCCTCATAGGTAAGGATCCGTATGTATACTCCTCTTTACTCAAAAATCCGAAGTATCAAGACGCATCTTTTCCTCACGATTTTATTCGTACTGATATACACAATCTAGAGCTCCATGAGGAGTATATGCAAGTCATCAAACTATTGCTCAAGCACTGCGAGTCTAGCAAAATACAAATACGTATTTATCTACGAAATGCTCAGGGTGAGATTGAGTTCCTACACTCCAAGTGTTATATTTGCTCGGGTGTAGACGACTCTCTAGGGATTATCGGCAGTTCTAACTTTACAAGCCGAGGGTTAATAGGGAATGCGGAGTTGAATTATCTCGAGAGTGATTCTCGAGTAGTAACTGCTAAACCTCAAAAGGGATCTGCTGCCAAGGGACATAGTCATTGGTTTGATGAAAAATGGACTATAGCCGAAGACTGGAGCCAAGAGTTTCTAGAGCAAGTTATTAAGACTGCACCTATTGCTCAGGAGACCATGAAATCTGCCAAACAAGAGATGCAGGAGCAATCACTATCTCCATACGAACTGTATATCAAGTTACTACAGTACAAGTTCAGCTCTCTAGTCGACAAAGATCTCAACGAGATCCTAACGGGTTACCTACCTAGCACTTTCGATGCCTTCGAGTACCAGCTAGACGCGGTCAAGCAGTGCTATAGCATCATGCAGGAACATGGAGGATTTATGCTCTCGGATGTCGTGGGACTTGGCAAAACTGTAGTGGGCACATTACTCGTCAAGCACTTCCTATCTATGCCCGAAGATGATGGTCGCAACAAAAGGGTACTGATCATCACTCCTCCTGCAATACTAGAAACATGGCGAGAAACCATTGATCTATTTGATGTAGACAAACCAGAGTCCATAGCTCCCTCGATCGACTTCGTTACCATGGGGAGCATAGGCAAGCTCGTAGATGATATCGAGGACGAAGACGAGCTAAATCTAGAGGAGCTAGATAGTGGAGAGTTTATTGAGCCACTACCCTGCGCCAACTACGGCCTGATTCTCATCGACGAAAGCCATCGACTCCGCAACAATCATACTCAGATGTATCAGTCTCTCGACACCCTCATTGAGCAGATTGTGCTGCGAGAGGGGGCATATCCCTATATCGGATTGCTCTCTGCTACCCCCCAAAACAATCGCCCAGATGACCTCAAACATCAGATATATTTATTCCAACGGAACCATACGGACTCTACGCTACGCAAGGCCAATGGTGGCAATCTGGAGAGTTTTTTTGCCGATATAGCTCGTGAATATCAATCTGTCATATACTCTCGCTACGACGAAGGCCCAACGGCAGAGCAAATACAGCAGAGTAGGAAACTACTCAATGACTTGTCTAGTCGCGTAAGAGACTGCGTCCTACAGGATATACTCGTCAGACGCACCCGAACCGACATCCGTAAGTACTACCCTGAGACCAAACTTACCTTTCCCGAGATTAGTGGCCCTCATAGCTTTGAGTATCGTATGAGCAAGAGCCTTGCCAAACTCTTCGCTCGTACGATGGACTGCATTGCGCCGAAAGAGAATTTTCAGTTCGACAGCTCTACCTCTCTATGCTACTACCGATATCGAGCTATTGAGTACCTGAGAGACGAGAGCACGCGTAAGCTCTACTCGGGGCGCAACATGGATGCCGAGCGATTCTCCCATCAGCTAGCACGCATTATGCAGATTGGCCTGGTAAAACGCATCGAGAGTAGCTTCTCCGCCTTCAAGGTCTCGCTCAAAAATCTCAAGCGTTACACCCAAAATATGGTGGATATGTGGGAGCACGATACCATATTCATCTGCCCACAGATAGATGTGAATGCAGAGCTCAATCCCCGTAAGCATTGGGATAGTACGAGGAAATTGTTCTCCTTCGAAGAGTGTGCCGAGGATCTACGCAAAAAGATCAACAAGCTCAACTCCTCTGGATCGAATGAGAAAGGGCGAAATAGAGAGTATCGACGTGAGGACTTTGCTCCAGAATACATTGATCTACTCCGTCAGGATCTAGCCCTCATCGACCAGCTAGATGAGCAGTGGAGCATCTACTCCGACGATCCCAAACTAGACGATTTTAAGCGACAGCTGCTACCTAGTCTGCTCAGTCTGGAGCGTAATCCAGAGCAGAAACTCGTTATCTTCACCGAGGCGATAGACACTGTGCGAGCCATTGAGCGGGCCATCGAGAGTGTCGATGACCGCCTCTCGGTGCTCTCGATCACAGCGAAGAACCGCCGAGAGCGCGAGGAAGATATCCGAGCAAATTTCGATGCCAACTACAAAGGGGAGCAGCGAGATGACTACCAGATCATCATCACGACAGAAGTGCTTGCGGAGGGTATCAACCTACACCGTGCCAACAGCATACTCAACTACGATACTCCATGGAATGCTACGCGCCTGATGCAACGCATCGGGCGAGTCAACCGCATCGGCTCCCAAGCTCCCTGCGTCTATGTCTATAACTTCATGCCGAGTGCAGAGGGAGATGCCGAGATCAATCTCGTCAAGAAAGCATATACCAAGCTACAGTCTTTCCACACACTTTTCGGTGAGGATAGTCAAATCTTCAGTGAAGAAGAAGAGGTTGTACACCACGAGCTGAAAACCCAGATCGAGGGCGCGGAGTCTGCCCTAGAGCAATACCTCTACGAGCTCAAAACCTACAAGGCGCAGCATCCAGAACGATACGACTATATCGCTCGGCAGAGCGAAGGGCTAGAGTTGGCTGTATCTGAGACAGAGGGGCAAGCTCTCTTCGTCGTCCGCAGCCCCAAGTGCCCTGCGATGTTCGTTCGCTATGATGCCCTAGAGGATAAGTGCTCTATGCTCTCTGCCCCACAGATGTACGAGGCTTTCCGCTCTGCTACGTTTGGAGCTCAAGCCTCCTTCGCCTTGCCCAAGGATTGGCAAGCACGGCGAGATGCAGCGGTACTCGCCGTCAACCAAGCTCTGGTCAAGCGTAATCTAAATATGAAGAGATCGGCTCGAGCTACTGAGGCTAAGGCAATCATCGACCAAATGAAAGAGATGCCGATGGAGGCACACTCACGTAAGCTACTGGCTTCCGCTCGCAAACTAGTGGATAAGGGAAATCCAGATATTATTAAGCGCATAATCGGCATCGGCCACCTCCTCAAAGAGCGAGAGGGGTCTTTACTGCCTATTACACAGGATGAGATCGATACGATTATTCACAAAGAAATAGAGATATTGGTCTCTGGCATCGCCAAGAAGTTTGGCCAAGCCGAGGTGTTTATTGGTTTATCACTA","5.50","-23.52","133479","MLLRNTLIDNSSPELSMSSCLKQCFRLDWVNRVRIATGYWDVPGMALVIKELSAFLEREGTMLQILIGKDPYVYSSLLKNPKYQDASFPHDFIRTDIHNLELHEEYMQVIKLLLKHCESSKIQIRIYLRNAQGEIEFLHSKCYICSGVDDSLGIIGSSNFTSRGLIGNAELNYLESDSRVVTAKPQKGSAAKGHSHWFDEKWTIAEDWSQEFLEQVIKTAPIAQETMKSAKQEMQEQSLSPYELYIKLLQYKFSSLVDKDLNEILTGYLPSTFDAFEYQLDAVKQCYSIMQEHGGFMLSDVVGLGKTVVGTLLVKHFLSMPEDDGRNKRVLIITPPAILETWRETIDLFDVDKPESIAPSIDFVTMGSIGKLVDDIEDEDELNLEELDSGEFIEPLPCANYGLILIDESHRLRNNHTQMYQSLDTLIEQIVLREGAYPYIGLLSATPQNNRPDDLKHQIYLFQRNHTDSTLRKANGGNLESFFADIAREYQSVIYSRYDEGPTAEQIQQSRKLLNDLSSRVRDCVLQDILVRRTRTDIRKYYPETKLTFPEISGPHSFEYRMSKSLAKLFARTMDCIAPKENFQFDSSTSLCYYRYRAIEYLRDESTRKLYSGRNMDAERFSHQLARIMQIGLVKRIESSFSAFKVSLKNLKRYTQNMVDMWEHDTIFICPQIDVNAELNPRKHWDSTRKLFSFEECAEDLRKKINKLNSSGSNEKGRNREYRREDFAPEYIDLLRQDLALIDQLDEQWSIYSDDPKLDDFKRQLLPSLLSLERNPEQKLVIFTEAIDTVRAIERAIESVDDRLSVLSITAKNRREREEDIRANFDANYKGEQRDDYQIIITTEVLAEGINLHRANSILNYDTPWNATRLMQRIGRVNRIGSQAPCVYVYNFMPSAEGDAEINLVKKAYTKLQSFHTLFGEDSQIFSEEEEVVHHELKTQIEGAESALEQYLYELKTYKAQHPERYDYIARQSEGLELAVSETEGQALFVVRSPKCPAMFVRYDALEDKCSMLSAPQMYEAFRSATFGAQASFALPKDWQARRDAAVLAVNQALVKRNLNMKRSARATEAKAIIDQMKEMPMEAHSRKLLASARKLVDKGNPDIIKRIIGIGHLLKEREGSLLPITQDEIDTIIHKEIEILVSGIAKKFGQAEVFIGLSL","919389 922868","TIGR ID: PG0861","superfamily II helicase","Cytoplasm","Numerous weak hits to helicase proteins in gapped BLAST; e.g. residues 769-957 are 28% similar to pir||G69958 SNF2 helicase homolog yqhH of Bacillus subtilis, residues 773-922 are 32% similar to gb|AAC33384.1| putative DEAH ATP-dependent helicase of Dichelobacter nodosus, residues 682-914 are 25% similar to gb|AAG20812.1| ATP-dependent RNA helicase; HepA of Halobacterium sp. NRC-1.This sequence is similar to BT4628.","
InterPro
IPR001650
Domain
Helicase, C-terminal
PF00271\"[833-881]THelicase_C
SM00490\"[791-881]THELICc
PS51194\"[764-949]THELICASE_CTER
InterPro
IPR014001
Domain
DEAD-like helicases, N-terminal
SM00487\"[271-482]TDEXDc
InterPro
IPR014021
Domain
Helicase superfamily 1 and 2 ATP-binding
PS51192\"[287-465]THELICASE_ATP_BIND_1
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[762-892]TG3DSA:3.40.50.300
PTHR10799\"[120-143]T\"[197-212]T\"[257-477]T\"[517-582]T\"[621-635]T\"[654-679]T\"[769-902]TPTHR10799
PTHR10799:SF39\"[120-143]T\"[197-212]T\"[257-477]T\"[517-582]T\"[621-635]T\"[654-679]T\"[769-902]TPTHR10799:SF39
SSF56024\"[81-183]TSSF56024


","BeTs to 7 clades of COG0553COG name: Superfamily II DNA/RNA helicases, SNF2 familyFunctional Class: K,LThe phylogenetic pattern of COG0553 is a--kY-vceBrh--gp--IN-Number of proteins in this genome belonging to this COG is 3","***** PF00176 (SNF2 and others N-terminal domain) with a combined E-value of 3.4e-17. PF00176A 297-309 PF00176B 331-349 PF00176C 404-414 PF00176D 440-461 PF00176G 846-899***** IPB000629 (ATP-dependent helicase, DEAD-box subfamily) with a combined E-value of 1.8e-06. IPB000629E 839-889","Residues 773-893 are 36% similar to a (HELICASE PROTEIN POLYPROTEIN ATP-BINDING RNA RNA-BINDING) protein domain (PD000033) which is seen in O32494_BACNO.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Mon Jan 5 15:21:56 2004","Mon Jan 5 15:21:56 2004","Tue Jan 7 14:25:30 2003","Fri Mar 9 09:09:59 MST 2001","Fri Mar 9 09:09:59 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Mar 9 09:09:59 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 798 to 881 (E-value = 6e-13) place PG0771 in the Helicase_C family which is described as Helicase conserved C-terminal domain (PF00271)","Fri Mar 9 09:09:59 MST 2001","34540631","","","","","","1","","7","PG0861" "PG0772","922882","926277","3396","ATGGAACTGAAACAATACTTACAGCAGTCTTATCAGGGCATCGAGTCTTTTCTGGAGAAAATAGTCTTCCCAATCTTTGGTCAAGAGCTATTTGAGGATGGTCATGGTGTATCTATCCTAGAGATGTACCCCGACCTACGACCAGCAGCACAAGCAACGGGCATCCTAGAGATCAAGCATATCGGCAATATCGATATGGATTTCAATCCTATCAACATCTTTGACATCACGGTATCTAGCCAGATCAAGATGGCTCGCAATAAGGTTGGCATCCAGAATATTATCAGGCGTATCATGGACACCTATTCGAGTGCTTTTATGATATTCCACTACGAGGACAATCCTTTGTGGGAATGGCGGTTTACCTTCTGCCACAAGGGGAGGAGCCAGTCCGACATTACCAGCAGCAAGCGTTTCACCTTCTTGCTCGGCCCTGGGCAGCACTGTCGTACAGCAGCAGACAACTTCCAGAAGTTAATCGACAAGAAACAACGCCAAGACATCGAACTCAAAGATATTGAGGATGCTTTCTCCGTCGAGGCACTGACGAAACAGTTCTACAAGGATCTCTTCGAGTGGTACCAGTGGGCCATATCTCCCGAGGCCGATATCAGTTTCCCTAATGATACTAGTACAAGTGAAGATGATAGAGAAGATCTAGAAACGAAGATAATCCGCCTAATTACGCGTATTATGTTTGTTTGGTTCATCAAGCAAAAGGAGCTGGTTCCTCAGCATCTTTTCGATATTGCCTTCCTCAAGACCATCCTCAAGGATTTCGATCCCAATAGCACCACCGAGGGGAATTATTACAATGCCATACTGCAGAATCTTTTCTTCGGTACACTCAACCGAGCACGCCAAGACGAAGATGGCAAACCACGACGATTTGCCACTGGGAGCAAGCGCGATGTGAAGACGCTCTATCGCTATGCAGAGCTGTTTAGCATCAGCGAGAAGGAGGTAATCCAGCTCTTCGACTCCATTCCGTTCCTTAATGGTGGTCTATTCGAGTGCCTCGACAAAACTCGCTACATCGATGGAGTAGAGCGATGCTACAGCTTGGATGGCTTTAGTCGCAATGATACACGCTTCGCAAATGGACGCTTCAAGCATCGAGCTACGATCCCCAACAATCTATTCTTTGCTCCTGAGAGAGGGCTGGTTTCTATCCTAAGTCGCTACAACTTCACTATCGAGGAGAACTCACCCGAGGAGCAACAAGTGGCACTAGACCCAGAGCTACTCGGCAAGGTCTTTGAGAATCTCCTCGGAGCATACAACCCCGAGACTCAGGAGACTGCTCGCAACCAGAGTGGCTCGTTCTATACTCCTCGAGAGGTTGTCAACTATATGGTGGATGAGAGCCTGATTTCTTATTTAGGAGATAGCGATCTGGTGCGCTCTCTGTTTAGACCAGATTTCGTACTGCAGGAGGACAACAAAGTGCAATGCGAAGCTATTGCAAGCAAACTCAAAGCAGTCAAGATACTAGACCCTGCTTGTGGCTCGGGAGCATTCCCAATGGGATTGCTCAATAGGATGATTGAGCTACTTGAGCGCATATCTCCCCAAGAGAAAAGCTATGATCTCAAGCTCTTTGTGATCGAGAATTGTCTCTACGGCTCAGATATCCAGAGCATCGCTGCTCAGATCACCAAGCTACGTTTCTTTATCTCTCTGATCTGCGACTGCGAGCGAGATGAAACAAAGCCCAACTTCGGCATTCCGACACTGCCCAACCTTGAGACCAAGTTCGTAGCCGCAAACTCCCTCATCGCCAAGAAGAAGATGGCACAGCATCGGAACCTCTTCGAAGATCCCGCGATTGAAGAAACTAAAAACGAACTTATAGGGGTGCGGCACAAGCATTTCTCTGCCAAGTCTACCTCGGCCAAGCTGCGCCTACGAGAGCAAGACCAAGACTTGCGTAAGAAGCTTGCACAACTTCTGGCAGAGAATGAAGACTTTGCACCTGAAGATGCTCTACAGCTCGCGGCATGGAATCCCTATGACCAGAATGCCGTCAGCTCATTCTTCGACCCTGAATGGATGTTTGGCCTCGCAGATGGCTTCGACATCGTGATTGGCAATCCCCCGTATGTACAACTACAGAATAATGGGGGAGAATTAACCAAGCTCTATCAAGGATGTGACTTCAAGACTTTTGCTCGTACTGGAGATGTATATTGCCTATTCTACGAGCGAGGCTGGCAACTACTCAAAGAGGGAGGGCACCTCTGCTACATCACCTCCAACAAATGGATGCGTGCAGGGTATGGAGAAAAGACAAGGCTATTCTTCGCCTCCAAGACTAACCCCAAGCTACTTGTAGACTTCGCTGGAGTTAAGGTCTTTGAGAGTGCTACGGTCGATACCAACATCCTACTCTTCGCCAAGGAGGCCAACGCAGGACAGACTCAAGCGGTCTCCCTGAATAAGAATGTCCAAATTGGCGGTAGTGAATTGTGCGAATATATTCAACAGCATGCAACAGCCTCTGCTTTCATCTCCTCCGAGAGCTGGGTCATCCTATCCCCTATCGAGCAGAGTATCAAGCGAAAAATAGAAGCCGTCGGCAAACCTCTCAAGGATTGGGATATTAACATTTATCGCGGTGTGCTTACTGGATGCAATGAAGCCTTTATCATAGATGAAGATAAGCGTAACGAAATACTCAATAACTGCCAGAGCGAGGACGAGCGTAAGCGAACGGAAGAGATTATTCGACCGATATTGAGGGGACGGGACATCAAGCGTTACAGCTATGATTGGGCAGGGCTGTATATTGTGTATATACCTTGGCATTTCCCCTTGCATTTAGACTCTACAATCACGGGAGCATCAGAAAAAGCAGAAGATGCATTTAAGGCTTCTTATCCTGCTGTATATAGATATCTTGAAGGATATAAAGATTTATTAACAAAGAGGAATCAAGCAGAGACTGGCATTCGCTACGAGTGGTATGCTCTTCAACGATGGGGGGCTAACTATTGGGAGGATTTCAGTAAGCCAAAAATTATGTGGAAAAGGATCGGATCCATACTTCGTTTTTGCTATAACGAGAATGGAGCCTTAGGATTAGATAGCACCTGTTTTGCTGCTGGTAAAGGAGCTGAGTTTTTGTGCTGCTTGCTAAACTCTCCTATGGGACATTATCTATTGAAAGACAGCCCTAAAACAGGGACAGGAGATTTGCTAATTAGTATTCAAGCAGTAGAACCAATCAAAGTTCCTCCTATTACAGAGACCTTAATAAGGTCTTTCAAAGCCCTATTAACGAATGTATGTCAAATTGGAACTGAGGAACAAGAAACCTCTATCAACCACCAAATTTTCTCTTTGTATAACCTCTCAGAGGAAGAACAGAGATACATTAAAAACAACTTTAGTCAT","5.40","-19.70","130026","MELKQYLQQSYQGIESFLEKIVFPIFGQELFEDGHGVSILEMYPDLRPAAQATGILEIKHIGNIDMDFNPINIFDITVSSQIKMARNKVGIQNIIRRIMDTYSSAFMIFHYEDNPLWEWRFTFCHKGRSQSDITSSKRFTFLLGPGQHCRTAADNFQKLIDKKQRQDIELKDIEDAFSVEALTKQFYKDLFEWYQWAISPEADISFPNDTSTSEDDREDLETKIIRLITRIMFVWFIKQKELVPQHLFDIAFLKTILKDFDPNSTTEGNYYNAILQNLFFGTLNRARQDEDGKPRRFATGSKRDVKTLYRYAELFSISEKEVIQLFDSIPFLNGGLFECLDKTRYIDGVERCYSLDGFSRNDTRFANGRFKHRATIPNNLFFAPERGLVSILSRYNFTIEENSPEEQQVALDPELLGKVFENLLGAYNPETQETARNQSGSFYTPREVVNYMVDESLISYLGDSDLVRSLFRPDFVLQEDNKVQCEAIASKLKAVKILDPACGSGAFPMGLLNRMIELLERISPQEKSYDLKLFVIENCLYGSDIQSIAAQITKLRFFISLICDCERDETKPNFGIPTLPNLETKFVAANSLIAKKKMAQHRNLFEDPAIEETKNELIGVRHKHFSAKSTSAKLRLREQDQDLRKKLAQLLAENEDFAPEDALQLAAWNPYDQNAVSSFFDPEWMFGLADGFDIVIGNPPYVQLQNNGGELTKLYQGCDFKTFARTGDVYCLFYERGWQLLKEGGHLCYITSNKWMRAGYGEKTRLFFASKTNPKLLVDFAGVKVFESATVDTNILLFAKEANAGQTQAVSLNKNVQIGGSELCEYIQQHATASAFISSESWVILSPIEQSIKRKIEAVGKPLKDWDINIYRGVLTGCNEAFIIDEDKRNEILNNCQSEDERKRTEEIIRPILRGRDIKRYSYDWAGLYIVYIPWHFPLHLDSTITGASEKAEDAFKASYPAVYRYLEGYKDLLTKRNQAETGIRYEWYALQRWGANYWEDFSKPKIMWKRIGSILRFCYNENGALGLDSTCFAAGKGAEFLCCLLNSPMGHYLLKDSPKTGTGDLLISIQAVEPIKVPPITETLIRSFKALLTNVCQIGTEEQETSINHQIFSLYNLSEEEQRYIKNNFSH","922834 926277","TIGR ID: PG0862","probable type II DNA modification enzyme (methyltransferase)","Cytoplasm","Several significant hits and numerous weak hits in gapped BLAST; e.g. residues 153-1128 are 26% similar to gb|AAD06987.1| putative type II DNA modification enzyme (methyltransferase) of [Helicobacter pylori J99, residues 683-1127 and 324-595 are 33% and 26% similar (respectively) to fragments (residues 825-1276 and 333-644) of gb|AAD08556.1| type IIS restriction enzyme R and M protein of Helicobacter pylori 26695, residues 744-1127 are 35% similar to |emb|CAB72525.1| putative type IIS restriction /modification enzyme, C-terminal half of Campylobacter jejuni.This sequence is similar to BT4627.","
InterPro
IPR002052
Domain
N-6 Adenine-specific DNA methylase
PS00092\"[695-701]?N6_MTASE
InterPro
IPR002296
Family
N6 adenine-specific DNA methyltransferase, N12 class
PR00507\"[440-456]T\"[497-511]T\"[692-704]T\"[728-752]TN12N6MTFRASE
InterPro
IPR003527
Family
MAP kinase
PS01351\"[206-316]?MAPK
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.150\"[442-801]TG3DSA:3.40.50.150
SSF53335\"[442-1086]TSSF53335


","BeTs to 4 clades of COG1002COG name: Type II restriction enzyme, methylase subunitsFunctional Class: LThe phylogenetic pattern of COG1002 is -m-------b--uj--O----Number of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","Residues 692-765 are 44% similar to a (METHYLTRANSFERASE RESTRICTION PROTEIN TRANSFERASE ENZYME) protein domain (PD002294) which is seen in Q9ZJA4_BBBBB.Residues 873-1117 are 32% similar to a (MODIFICATION METHYLTRANSFERASE) protein domain (PD018063) which is seen in O26046_HELPY.Residues 392-518 are 26% similar to a (PROTEIN TYPE ENZYME IIS RESTRICTION R M ECO57IR PUTATIVE) protein domain (PD043461) which is seen in YY02_METJA.","","Thu Jun 14 13:49:55 MDT 2001","","Thu Jun 14 13:49:55 MDT 2001","Thu Jun 14 13:49:55 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:49:55 MDT 2001","Thu Jun 14 13:49:55 MDT 2001","","","Tue Mar 6 16:42:22 MST 2001","Mon Jan 5 15:20:09 2004","Tue Mar 6 16:42:22 MST 2001","","Mon Jun 18 09:09:45 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 414-562 are 25% similar to PG1284, a conserved hypothetical protein.","Mon Jun 18 09:11:31 MDT 2001","Tue Mar 6 16:42:22 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jun 18 09:09:45 MDT 2001","34540632","","","","","","1","","7","PG0862" "PG0773","926644","926273","372","TTGGAGGATTTCAGTAAGCCAAAAATTATCTTTCAAGAAATGGTTCAAGAAAGCCAGTTCTACTATGACAGTTCAGCAGAGTTCTTCTGTAATGATACTTGCCGTATCATTACAGGAGAATATCTACCATATCTATTGTTAATACTCAATAGTCATCTGTTTTTCTATTCTGTCAAGCACTTCTATGGAGGAGGAGGGCTTGGTGGGCATGGTGTCCGCATGAAGCATACCTTCTTTCAAAGATTCCCTTGTCTTCCCTACGATGAGAAGATAGAATTATCAATAGGTAGTAATGATAGTCAATATTTTGAGAAGTTACTATGTCAGAGGTATGATCTTAATGATGAAGAAATTCAACATATTCTCAATGAC","4.80","-6.99","14630","LEDFSKPKIIFQEMVQESQFYYDSSAEFFCNDTCRIITGEYLPYLLLILNSHLFFYSVKHFYGGGGLGGHGVRMKHTFFQRFPCLPYDEKIELSIGSNDSQYFEKLLCQRYDLNDEEIQHILND","926644 926273","TIGR ID: PG0863","hypothetical protein","Cytoplasm","No significant hits found using gapped BLAST search of GenBank.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","","","","","Thu Mar 8 17:12:37 MST 2001","Thu Mar 8 17:11:28 MST 2001","Thu Mar 8 17:11:28 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 8 17:11:28 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Mar 8 17:11:28 MST 2001","","","","","","","1","","7","PG0863" "PG0774","927761","927144","618","ATGATATACGGATACATTAGAGTCAGTAGTGATAAGCAAACAGTAGAGAACCAACGATTTGAGATTACGAACTTCTGCGACAGACATCAGCTGGTTATCGACGACTGGATAGAAGAAACCATTAGCGGAACTAAGGCCTACAATAAGCGACAGCTCGGACGCCTCCTCCGCAAGGTGGGTAAAGATGATATTATTATATGTAGCGAACTATCGCGTCTTGGTCGCAACCTCTTTATGATCATGGAGATACTCAACATCTGTATGACTAAGGAATGTCGTGTCTGGACCATCAAAGACAATTATCGACTAGGGGATGATATTCAGAGTAAGGTTTTGGCCTTCGCGTTTGGCCTATCGGCAGAAATCGAACGTAACCTCATCAGCCAACGAACTAAAGAAGCTCTCGCCCGTAAGCGAGCCGAAGGCGTCGTACTCGGCAGACCTAAGGGGGCGAAGACTGCTCCCGAAAAACATAAGTTATACCGAAAGCGAACCCTCATTGCGGAGCTACTCAAGCAGCGGATATCACAGCGAAAAATCGCGGAACTCATACGCGTAGATAGAGGCACTCTAGGTCGATTCATACAGTCGAGAAAGGAACTGAAAGACCTGATTCAC","10.70","16.54","24019","MIYGYIRVSSDKQTVENQRFEITNFCDRHQLVIDDWIEETISGTKAYNKRQLGRLLRKVGKDDIIICSELSRLGRNLFMIMEILNICMTKECRVWTIKDNYRLGDDIQSKVLAFAFGLSAEIERNLISQRTKEALARKRAEGVVLGRPKGAKTAPEKHKLYRKRTLIAELLKQRISQRKIAELIRVDRGTLGRFIQSRKELKDLIH","927761 927144","TIGR ID: PG0864","resolvase","Cytoplasm","Residues 2-157 have 35% similarity to U58366, Y. enterocolitica resolvase.Residues 1-173 have 31% similarity to Y00537, C. perfringens resolvase.Residues 2-148 have 35% similarity to M15197, E. coli resolvase.","
InterPro
IPR006118
Family
Site-specific recombinase
PS00397\"[5-13]?RECOMBINASES_1
InterPro
IPR006119
Domain
Resolvase, N-terminal
PF00239\"[2-144]TResolvase
InterPro
IPR010921
Domain
Trp repressor/replication initiator
SSF48295\"[153-193]TTrp_repress_rep
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.1390\"[1-127]TG3DSA:3.40.50.1390
SSF53041\"[1-145]TSSF53041


","No hit to the COGs database.","***** IPB001822 (Site-specific recombinase) with a combined E-value of 3.2e-24. IPB001822A 3-17 IPB001822B 37-87 IPB001822C 108-148 IPB001822D 174-193","Residues 3-198 are 32% similar to a (RECOMBINASE DNA RECOMBINATION DNA) protein domain (PD112887) which is seen in Q04560_BBBBB.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Mar 8 17:09:12 MST 2001","Thu Mar 8 17:09:12 MST 2001","Thu Mar 8 17:09:12 MST 2001","Thu Mar 8 17:09:12 MST 2001","Thu Mar 8 17:09:12 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 8 17:09:12 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 2 to 144 (E-value = 3.9e-19) place PG0774 in the Resolvase family which is described as Resolvase, N terminal domain (PF00239)","Thu Mar 8 17:09:12 MST 2001","34540633","","","","","","1","","7","PG0864" "PG0775","928988","927861","1128","ATGTATCATTCTCTATTTGAAAGCCTCTGCATGGTTCCGGACCCACGGATAGAGCGTAAAAAAATTTATCCTCTTGATTTTTTACTGCTGATCGTTTTCCTCTCTACACTCTCAGGCAATACCTCTTGGTATGAGATTGAAGATTATGCCGAGGAATACGAAGAAGAATTGAAAAGTCTATACGAAATGCTTACCGGCCATCAGCTTATGCATACCATGCCTTCTCATGATACTCTCAACAGGAGCATCAGTCTGTTGGATGTAGAAGCTTTTGAGGGGGCTTATAAGCGATGGATTGAAGGCTTTATCTCGGCCACTTCGGGTAAACATATTTGCATTGATGGCAAGACGATGCGGGGAGTGAAGAAACTCTCTTTCGATACACAATCCCATGTCGTCTCTGCCTTTTCACCACAAGATATGTGCAGTCTTGCCCAACTCTACATCGACCGAAAAACAAACGAAATACCGGCTATACATCAACTTCTTGATTTGCTTGACTTGAACGGGGCTGTTGTCTCCATTGATGCCATAGGTACACAAACTGCCATTGCCGAACAAATTATCGATAAGGGCGGAAACTATGTATTGTGTGTTAAAGCGAATCAAAGTTTGAGTCTGCAAGAGATTGAAGCCTATTTCTGCCCTCTTTTTCAGAAACATATCCTCCTTGACGAACAGACGGAACTATCTCACGGACGCATAGAAACACGTCGCTATGAAAGTATTCTCAATCCCTTGGAGATAGAAGCCAACGAGGTATTAACTCGCTGGAAAGGCTTGAGGTCGATACACAAAGTTGTACGCAAACGAAGGGATAAAAAGAGTGACAAAACGAGTGAAGAAGTGGCCTACTACATTTCGTCATTAACAGATGTTTCTTCATTGAAACAAGCTATTCGTGGGCATTGGGCGATAGAGAATAAGTTACACCACTGTTTGGATGTCTATTTCGGACACGATGCCTCGCACAAGAGAACGAGGAATGTGGCGCAGATTATGGATATCATTCAAAAGATTAATTTACTCATTATAGAGAGACTAAAAACGAATATGAAGTCCTCAATCCCTCGCATCCAAAAGAAACTGGCTCGAATGAAGCCACAACAACTAATCACAATACAATTT","7.40","2.35","43313","MYHSLFESLCMVPDPRIERKKIYPLDFLLLIVFLSTLSGNTSWYEIEDYAEEYEEELKSLYEMLTGHQLMHTMPSHDTLNRSISLLDVEAFEGAYKRWIEGFISATSGKHICIDGKTMRGVKKLSFDTQSHVVSAFSPQDMCSLAQLYIDRKTNEIPAIHQLLDLLDLNGAVVSIDAIGTQTAIAEQIIDKGGNYVLCVKANQSLSLQEIEAYFCPLFQKHILLDEQTELSHGRIETRRYESILNPLEIEANEVLTRWKGLRSIHKVVRKRRDKKSDKTSEEVAYYISSLTDVSSLKQAIRGHWAIENKLHHCLDVYFGHDASHKRTRNVAQIMDIIQKINLLIIERLKTNMKSSIPRIQKKLARMKPQQLITIQF","928988 927861","Note BLAST similarities to E.coli and V.cholerae proteins.Member of IS5 family of elements.TIGR ID: PG0865","ISPg2 (PGIS2) transposase","Cytoplasm","PG0775 is equivalent to the previously sequenced gb|AAC45368.1 in GenbBANK. Residues 4-364 are 32% similar to an uncharacterized sequence from E.coli 0157:H7 (AE005200). Residues 11-358 are 31% similar to the RfbQRSO22-3 sequence of V.cholerae (AF004383).","
InterPro
IPR002559
Domain
Transposase, IS4-like
PF01609\"[110-344]TTransposase_11


","No hit to the COGs database.","***** PF01811 (Transposase) with a combined E-value of 2e-24. PF01811A 0-35 PF01811B 36-52 PF01811E 134-181 PF01811F 183-207","Residues 132-264 are identical to a (PROTEIN TRANSPOSASE REGION PUTATIVE) protein domain (PD004339) which is seen in P95492_PORGI.Residues 332-376 are identical to a (PUTATIVE TRANSPOSASE) protein domain (PD054580) which is seen in P95492_PORGI.Residues 279-331 are identical to a (PROTEIN TRANSPOSASE PUTATIVE REGION) protein domain (PD004012) which is seen in P95492_PORGI.Residues 1-131 are 83% similar to a (PUTATIVE TRANSPOSASE) protein domain (PD103322) which is seen in P95492_PORGI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Thu Feb 8 13:12:43 MST 2001","Thu Feb 8 12:33:37 MST 2001","Thu Feb 8 12:33:37 MST 2001","Thu Feb 8 12:18:47 MST 2001","Fri Feb 16 15:50:31 MST 2001","Fri Feb 16 15:50:31 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG0775 is identical to PG1522, PG1185, PG0775 and PG0249, all predicted ISPg2 elements. PG0775 is similar to PG0943 and weakly similar to PG1058, PG0889, PG1795 and PG1855.","Thu Feb 8 12:33:37 MST 2001","Fri Feb 16 15:50:31 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 110 to 344 (E-value = 5.8e-39) place PG0775 in the Transposase_11 family which is described as Transposase DDE domain (PF01609)","","34540634","","Wang,C.Y., Bond,V.C. and Genco,C.A.Identification of a second endogenous Porphyromonas gingivalisinsertion element. J. Bacteriol. 179 (11), 3808-3812 (1997)","","Thu Feb 8 12:18:47 MST 2001","","1","","7","PG0865" "PG0776","929125","930267","1143","ATGTTAGGGGCAATTATAGGAGACTTAGTCGCTTGGACTTGGGAGCGTGATCAGAGCCTTTTCTATCAAAGGCTTATCGCTCCCAAGGCGAACATTTCAGAGGTTGGACTTGCTGTACTTGGGGTAACGGAACCGATGCTTCGTGGATCATCCGAGGTTGAATGGGAGAGCCTTTATCTACACATCCGTGAGATAATACAGCGAGATCGCATTACAGATATCAGTCCAGACTTCAACGACTGGACGGAGGCAGGGCATCAAGCCGTTATCCCTAAGGAGGTGAAGAGTGTAATGCATCTTGCAGTATCCATTGTTGGAGGCTGGTGTGATGCTCCTCTAGAAACAACTTTAGCCTACTCAAGAAGGTTTCACGGAGGCAAAGAAGAGTACTATCTCACTCAGATTGCGGAGATCATCTACCGACTACGTCAGGGGGCAACGAAGCAGGAAGCAATGGAGGATATTCATTATATCAAGAACTGGAAACCTCAGGGCAAAGTAAGTTTACTGGGTTATGCCCATCATGCATGGCAATGCTTCCTACAAAGCTGGGACTTTACTTCAGCCCTTCATAATGCTATGCGATGTTCGTATGGAGACAAGCATCTCTTGGGAGCTTTGACAGGAGCTATCGCTGAGGCAATGTATAGTTGTGAGTATGGATTTATCAAGGAGAAGTATGGCAAAGGCAGTGATACTCAGTTTATGCTATCTCTTCCCAAAGAACTTAGTGGACTATATAGAGTGGAGCTTGGGCTAATAGAGTCGAACAAAGAGCTTCTCCGAACTTTCTTCCCCAAGAATAGAGCTTTAACGAATGTTGAAGTTTGGCAATGGTTTGATTTACCTAATATCGTAGCTCATAAACCTCTAAGTGAAAGGGAATATCAGCGTATTCGCTTATCTCACGACACTGGATGGGATGCTCGCTATGGCATTTATTGGGACGATGGTTGGTACTATGTCTATTGTAGTGGCTTTCTACTCAATCGCTTTAGAGTAGAAGAGATGCAGGATCATACTTACCGCATCACACGAATACAGTACTGCACGCAGCACGAGGAGGGCAAGGCCTATAATGCTCTCATCAAGGCTCTATCTCTTGACGGTCTAGATATGTCGGCTTATTCTCAGTATAAGGAC","6.30","-5.13","44166","MLGAIIGDLVAWTWERDQSLFYQRLIAPKANISEVGLAVLGVTEPMLRGSSEVEWESLYLHIREIIQRDRITDISPDFNDWTEAGHQAVIPKEVKSVMHLAVSIVGGWCDAPLETTLAYSRRFHGGKEEYYLTQIAEIIYRLRQGATKQEAMEDIHYIKNWKPQGKVSLLGYAHHAWQCFLQSWDFTSALHNAMRCSYGDKHLLGALTGAIAEAMYSCEYGFIKEKYGKGSDTQFMLSLPKELSGLYRVELGLIESNKELLRTFFPKNRALTNVEVWQWFDLPNIVAHKPLSEREYQRIRLSHDTGWDARYGIYWDDGWYYVYCSGFLLNRFRVEEMQDHTYRITRIQYCTQHEEGKAYNALIKALSLDGLDMSAYSQYKD","929125 930267","TIGR ID: PG0866","hypothetical protein","Cytoplasm","This sequence corresponds to gi:34396949 in Genbank.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","","Fri Mar 4 10:14:41 2005","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Mar 4 10:14:41 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540635","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Fri Mar 4 10:14:41 2005","","1","","7","PG0866" "PG0777","931025","930333","693","ATGAACGACCAAATCAACGTCCTCCTCGAAGTACTCGAAGAAATCAAGCAACAGAACAGAGAACTCAAAGCGAGTATCTCCAATTTACCACAACCAACAGAGTCGCAAGGAGAAGTCGAGAATAGGAAAAATCTCGCAGGAATCGCCAAGATTTTAGAGGAGCAACAGGAGTTTCATCGTCGATTCAGAGAGGAACTTTGTCAAGTAATTGCTAAACTTGGAGAGCGCATCTACGAAATGAAGTCAGGCATTACCGAGGTACGGATAAGTCAAGACGAAGCGACCGACAAACTCTTGACAGAACTCCAAACTAAACAAACCACACCCGAAATAAAGCTTTCCAAATACTACCTTTTCGATGTCAAACGCTGGGCAGAATGGCTCATATGGGGTGTGATGATCGCTGTCCTTGCCTGCGTCATTGGTTGGGCGACACATCTCTATGGCGTCAATCAAGCCCTTGATAGTCATGCTCTCCGCTATCGTATTCTACGAATGGAGCTCGGCTATACACAGCCAAACATCGCCAGCCTTGACAGCCTTTTCTCCTCCGAAGACTCCTCCGACTCCATTCGCAAGCTCCGCTCTCGTGTCACGAACTACGAACTAGCCATCGAACGCCAAGCCGAACTCCAGCTCCAGCAACAACTCCTCTCCCAAGAGCAAGAAGCCCTCACTCAACAACTCCAGCAG","5.10","-6.35","26821","MNDQINVLLEVLEEIKQQNRELKASISNLPQPTESQGEVENRKNLAGIAKILEEQQEFHRRFREELCQVIAKLGERIYEMKSGITEVRISQDEATDKLLTELQTKQTTPEIKLSKYYLFDVKRWAEWLIWGVMIAVLACVIGWATHLYGVNQALDSHALRYRILRMELGYTQPNIASLDSLFSSEDSSDSIRKLRSRVTNYELAIERQAELQLQQQLLSQEQEALTQQLQQ","931025 930333","TIGR ID: PG0867","hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
noIPR
unintegrated
unintegrated
tmhmm\"[127-147]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Mar 8 17:02:34 MST 2001","","Thu Mar 8 17:02:34 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 8 17:02:34 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Mar 8 17:02:34 MST 2001","34540636","","","","","","1","","7","PG0867" "PG0778","931945","931025","921","ATGATAGCCAAGATAATCAAAGGTACATCCTTCTCTGGGGTACTCGCTTATATCCTTGGTAAGCAAGAAGGTAAAGCCCGAATCCTTTATGCCGATGGCGTGAGAGCCAATGCTCAAGCATCAGATATTGCGAATGACTTTGCCTTACAAGCCTCAATGCGCCCCAATGTAAAGAAACCTGTTTGCCATACCATTCTTAGTTTCTCTGCTGAAGATACAGAGCGTTTATCTGATAAGGTAATGACCGATTTGGCGAAGGAATATCTCCAACGAATGGGCTATGCCGATACTCAATACCTCATCGTACGGCATCTTGACAGGGAGCACCCACACTTACACATCTGTATCAATCGTGTGAATAATGAGGGGAAAACAATTTCAGACAGCAATGAAAAGTATTGCTCAACAAAGGTCTGCAAAGAACTCACCGAGGCTAACCTGCTGAAATGGGGCGAAGGAAAAGAGGCTGTAAAACGTCATCGCCTAAGAGGAAATGATCAACTTAGGTATGCCATCTTCGATGCAATAAAAGCTGCACTACCCAAGTGCACGAACTGGCAAGAGCTTACCTCCGAACTGCAAAAGCGAGGTATTGAAGTACAATTCAAAACAAAGGGGCAAACTGAGAAAGTCGAAGGAGTTATTTTCTCTATGGATGGTGTCAGCTTTAGTGGTTCGCATATCGACCGCTCATGTAGCTACTCCAAACTCTCTTTTGCGTTAGAGCAAAATGCAAAGCACGCTCTTTCTCTGCCTGCGCTACCAAAAGAGGATGGTTTTATCGAAGAATTGAGCGAAGCCATAGAAAAGCTTGGAGAGAACCTATTCGACAGCAATGCGCCTGCCGTAGATGTTGCCGAACTCATATTCCAACGTAAACTCAGAAATCAAGCTAATAAGAAACTAAAACGCAGAAGATTA","9.40","9.66","34589","MIAKIIKGTSFSGVLAYILGKQEGKARILYADGVRANAQASDIANDFALQASMRPNVKKPVCHTILSFSAEDTERLSDKVMTDLAKEYLQRMGYADTQYLIVRHLDREHPHLHICINRVNNEGKTISDSNEKYCSTKVCKELTEANLLKWGEGKEAVKRHRLRGNDQLRYAIFDAIKAALPKCTNWQELTSELQKRGIEVQFKTKGQTEKVEGVIFSMDGVSFSGSHIDRSCSYSKLSFALEQNAKHALSLPALPKEDGFIEELSEAIEKLGENLFDSNAPAVDVAELIFQRKLRNQANKKLKRRRL","931945 931025","TIGR ID: PG0868","transposon, MocA","Cytoplasm, Periplasm","Residues 1-245 have 44% similarity to L20975, Transposon Tn4399 'MocA' .","
InterPro
IPR005094
Family
Relaxase/mobilization nuclease
PF03432\"[7-244]TRelaxase


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 1-306 are 39% similar to a ('MOCA') protein domain (PD131506) which is seen in Q56424_BACFR.Residues 55-230 are 29% similar to a (MBPB PLASMID) protein domain (PD123310) which is seen in Q45123_BACFR.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Mar 8 16:57:23 MST 2001","Thu Mar 8 17:00:40 MST 2001","Thu Mar 8 16:57:23 MST 2001","","Thu Mar 8 17:00:40 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Resideus 1-142 have 27% similarity to PG1305. ","Thu Mar 8 17:00:40 MST 2001","Thu Mar 8 16:57:23 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 7 to 244 (E-value = 1.7e-36) place PG0778 in the Relaxase family which is described as Relaxase/Mobilisation nuclease domain (PF03432)","Thu Mar 8 16:57:23 MST 2001","34540637","","","","","","1","","7","PG0868" "PG0779","932295","931945","351","ATGACAATACAAGATAAAAATAGAGGTGGAAGACCCACCAAAAAACTATCTGAAAAGAGACGTTACTCCGTCCTACTCAAACTGAATACCATGGAATACTTTACGCTCAAAAGTAAAGCCTCTGAAGCTGGTGTCAATAAAAACGAATACTTGCGTTCGCTCATCTCTGAGGGGCAAATCAAGGCTCGCATCACGGTAGAGCAAATGAAGGAAATCCGCCTCCTCTCAGGCATGGCGAATAACATCAACCAGATTGCTCATCGCCTAAATACTTTTGGAGTATCCACAGTCCCCACTGAACTAAAAATGTTGAAACTCTTGATCGAAGAGCAACTCAAAAGCTTGAAAAGA","11.00","12.23","13435","MTIQDKNRGGRPTKKLSEKRRYSVLLKLNTMEYFTLKSKASEAGVNKNEYLRSLISEGQIKARITVEQMKEIRLLSGMANNINQIAHRLNTFGVSTVPTELKMLKLLIEEQLKSLKR","932382 931945 [Delay by 84 1012 68 7]","TIGR ID: PG0869","transposon MocB","Cytoplasm","Residues 13-116 have 31% similarity to L20975, Transposon Tn4399 'MocB'.","
InterPro
IPR008687
Domain
Bacterial mobilisation
PF05713\"[71-117]TMobC


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 13-116 are 31% similar to a ('MOCB') protein domain (PD087177) which is seen in Q56423_BACFR.","","Thu Jun 14 13:52:20 MDT 2001","","Thu Jun 14 13:52:20 MDT 2001","Thu Jun 14 13:52:20 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:52:20 MDT 2001","Thu Jun 14 13:52:20 MDT 2001","","","Thu Mar 8 16:53:58 MST 2001","Mon Jun 18 09:27:43 MDT 2001","Thu Mar 8 16:53:58 MST 2001","","Mon Jun 18 09:27:43 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 8 16:53:58 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 71 to 117 (E-value = 2.4e-05) place PG0779 in the MobC family which is described as Bacterial mobilisation protein (MobC) (PF05713)","Mon Jun 18 09:20:41 MDT 2001","34540638","","","","","","1","","7","PG0869" "PG0780","933454","932399","1056","ATGAGCAATTATAGATTCAAATTAGAACCATACAAAGGTGTGCGGACACGGCATACCTGCCCATCGTGCGAACGTCCTCGATGCTTCGCTCGCTATATTGACACAGAGGGTAAAATAGAGTTTCCTGATAATGTAGGGCGTTGCGACCACGAGCAGAGGTGTGGCTATCACTTCACCCCCAAGGCGTACTTTGCAGAACACCCGACAATGAAGGAAGAGCTGCATTCAACTTCTGAGGTTATCAGCAAACCTATCCCTCCCGCTCCTCCCTCTTTTATTGATAGGGAAATGATGGAGAAGACTCTAAAGGGGTACGAACTCAATAATCTTTATCTCTTTCTCTGTGGACGTCTGGGAAAAGAAAACACATTACAACTTATGCGACATTATCATGTCGGTACTTCCAGGCATTGGTCAGGAGCAACGGTCTTTTGGCAAATAGACACCAGAGGACAAGTGAGAGCTGGTAAGATTATGCTTTACGATCCCGAAACAGGTAAGAGGATAAAGAAGCCGTTCAATCATATTACGTGGGTACATAGCCTGCTCAATCGCCCGAACTACAACCTACGGCAATGTCTTTTCGGGGAGCATCTTTTGTCGCAAGAGACTCAAAAACCAGTGGCTTTGGTCGAGAGTGAGAAGACGGCTCTCATTGCCTCTCACTACCTACCCCAATATCTTTGGTTGGCTACTGGAGGAAAACATGGATGTTTCAAAAGTAGCAGCCTCACGCCTCTGTTGGGCAGGAACGTTATTCTCTTTCCAGATCTCGGTGCGACTGCATACTGGCAAGAAAAAATGTTGATGATGCAATCCATGGGAATAGAGGTGCAACTCTTCGACTATTTGGAGAGGCATGCTCCTTCCCAAGACCAGCATGAAGGGTACGATATAGCCGATTATCTCCTTCAGATCAAAACCAAAGAATCGGTGTTGAGTGAGTTAATCCGGCGCAATCCAGCTCTTAAACTTTTGGTCGATAAACTTGAACTTCAAGTGGTCGAAGAGGCCAGATCAACCAAGCCTCCTCTTAGAAAGAGAGGACTTCGTAGA","9.70","14.25","40896","MSNYRFKLEPYKGVRTRHTCPSCERPRCFARYIDTEGKIEFPDNVGRCDHEQRCGYHFTPKAYFAEHPTMKEELHSTSEVISKPIPPAPPSFIDREMMEKTLKGYELNNLYLFLCGRLGKENTLQLMRHYHVGTSRHWSGATVFWQIDTRGQVRAGKIMLYDPETGKRIKKPFNHITWVHSLLNRPNYNLRQCLFGEHLLSQETQKPVALVESEKTALIASHYLPQYLWLATGGKHGCFKSSSLTPLLGRNVILFPDLGATAYWQEKMLMMQSMGIEVQLFDYLERHAPSQDQHEGYDIADYLLQIKTKESVLSELIRRNPALKLLVDKLELQVVEEARSTKPPLRKRGLRR","933478 932399","TIGR ID: PG0870","conserved protein associated with transposition","Cytoplasm","Residues 1-335 have 37% similarity to U75371, B. fragilis unknown protein associated with transposition. ","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 13:53:39 MDT 2001","","Thu Jun 14 13:53:39 MDT 2001","Thu Jun 14 13:53:39 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:53:39 MDT 2001","Thu Jun 14 13:53:39 MDT 2001","","","Thu Mar 8 16:50:26 MST 2001","Mon Jun 18 09:33:20 MDT 2001","Thu Mar 8 16:50:26 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 8 16:50:26 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jun 18 09:29:28 MDT 2001","34540639","","","","","","1","","7","PG0870" "PG0781","934928","933555","1374","ATGGAAGAAGAAGCTATCGTTCCAGAAGTCCTTCTTGACAAAGCAATAGAGTTGGGCTTGTCGTTCACGGGTTCGACCTTTCCTATCAGCATATTTCCCTCTGAGATACGAAACATCATTGCAGAGGTACATGAGTGCCAAGGTTTTCCCATCGATTACATCGCCTCTGCCATGCTTGTGGCAATTGCTGTGGGGATAGGAAATACTCATCTTGCCGAACTCAAACGCGGCTGGCAGGAAAGTACGATGCTCTATGTCGCATTGGTCGGACGTCCAGGGACAAATAAGAGTCATCCGCTAAGCTTTGCGATGAAGCCTTTTCTTGATTTTGACTATCAGGAAAACAAACTATACGAACGCTCCTATGCCGAATATGACAACATCATGCGTATGAATCGTAAGGAGCGAATAGAGGGAGGCTTCCCAGACCAACCGACAGAGCCGATGCGCAAACGTTTTCTTGTCTCGGATATTACGCCCGAAGGCTTGAGCTTTATTCACGCACAGAATAAGCGAGGGCTTTGTTTGTGGACGGACGAACTATCTGCTTGGTTTAAAAACTTCAATCGCTACAATAGTGGCTCGGAGGAGCAGTTTTGGTTATCTGTATTTAGTGCCAAAGCGACGATCAGTGACCGAAAGGGTAATCGAAGTTCTATTTTCATCAAGCGTCCTTACATCTCTGTTGTGGGCACTATTCAGAAGAAGATTCTCGGAGAACTTTCCAAAGGTGAACGCTCCAGTAATGGCTTTATAGACCGCATTCTATTTGTGATGCCTAATCTTCAGCAGAAAGCCCGATGGAGCAGAACCGAGCTTCCAGATGATACAGAGAAACGCTGGGGAGGTATTATTCGACGGCTCATAGACTTACCATGTGCCAAGGATGAAGAAGGGGAAGTTACCCCTGAGATTATTCCCTTTGAAGAAGATGCCAAAGCTCGACTCTATATGTGGCAGGAAGAGCATGCTCGACTATGCGATACTGAGGCTAATGAAGTACTTGTAGGAGTCTATTGTAAATTAGAAATCTACATCATCCGTTTTTGTCTCATTATTCAGTTGGCTCGATGGGTATGTGGCGAAAGTGAAAAGTCCGCTATAGACCTGACATCTGTGGAGCGAGCCATCACTCTTACCGAGTATTTCCGCCATTCGGCACAGCAAGTACACGCAGAGATCGCAGGTGTTCAGCTCACTCAGCAACAGCAACAACTCCTTGCCGAGCTACCAGCATCTTTTCAGACTGCCGAAGCCCTGAGTATTGCCCAAAAATTGGGGATGAAAGAAAGAGCTTTTAAGGATTTTCTCAGTCGTAATATCGGACACCTCTTTGCTAAGGAACGACACGGACTTTACCATAAACTCAATATG","6.40","-3.87","52448","MEEEAIVPEVLLDKAIELGLSFTGSTFPISIFPSEIRNIIAEVHECQGFPIDYIASAMLVAIAVGIGNTHLAELKRGWQESTMLYVALVGRPGTNKSHPLSFAMKPFLDFDYQENKLYERSYAEYDNIMRMNRKERIEGGFPDQPTEPMRKRFLVSDITPEGLSFIHAQNKRGLCLWTDELSAWFKNFNRYNSGSEEQFWLSVFSAKATISDRKGNRSSIFIKRPYISVVGTIQKKILGELSKGERSSNGFIDRILFVMPNLQQKARWSRTELPDDTEKRWGGIIRRLIDLPCAKDEEGEVTPEIIPFEEDAKARLYMWQEEHARLCDTEANEVLVGVYCKLEIYIIRFCLIIQLARWVCGESEKSAIDLTSVERAITLTEYFRHSAQQVHAEIAGVQLTQQQQQLLAELPASFQTAEALSIAQKLGMKERAFKDFLSRNIGHLFAKERHGLYHKLNM","934928 933555","TIGR ID: PG0871","conserved hypothetical protein","Cytoplasm","This sequence corresponds to gi:34396954 in Genbank.Its nearest neighbor in the NR database is gi:53715554 from Bacteroides fragilis YCH46.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Mar 4 10:17:04 2005","Fri Mar 4 10:17:04 2005","Thu Mar 8 16:46:19 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 8 16:46:19 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Mar 8 16:46:19 MST 2001","34540640","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Fri Mar 4 10:17:42 2005","","1","","7","PG0871" "PG0782","935297","934941","357","ATGAACAAAGAAATCACTTTTGATAAGCTACCCGAAGCGGTAACGTATCTGACCGAACAGGTCTCCGCCATTAAAGAAATGGTATCAGCATTGCACCCTCCTGTGCCTGAAGAAAAATCTCTCATAGGCATAGACGAAGCGTGCGTAATTATTCAGAAAGCTAAACCTACCATCTATGCTTTGGTACGCAAGGGAATTGTCCCTGCATATAAGCGTGGCAAGAAACTCTACTTCTACAAAGAAGAGTTACTACAATGGGTAGAGTCTGGACGAAAGGGTGCAACTACAGCCATATCATCTGAGGAGCAACTGGCCATGATGCGTCAAGAGGTGCGTCGTAAACCGAAATCTATCAAG","10.20","6.19","13521","MNKEITFDKLPEAVTYLTEQVSAIKEMVSALHPPVPEEKSLIGIDEACVIIQKAKPTIYALVRKGIVPAYKRGKKLYFYKEELLQWVESGRKGATTAISSEEQLAMMRQEVRRKPKSIK","935297 934941","TIGR ID: PG0872","excisionase","Cytoplasm","Residues 5-115 have 32% similarity to U75371, B. fragilis excisionase.","
InterPro
IPR009061
Domain
Putative DNA binding
SSF46955\"[40-105]TPutativ_DNA_bind
InterPro
IPR010093
Domain
Excisionase/Xis, DNA-binding
TIGR01764\"[41-89]Texcise


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Mar 8 16:45:13 MST 2001","Thu Mar 8 16:45:13 MST 2001","Thu Mar 8 16:45:13 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 8 16:45:13 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Mar 8 16:45:13 MST 2001","34540641","","","Tribble,G.D., Parker,A.C. and Smith,C.J., Genetic structure and transcriptional analysis of a mobilizable,antibiotic resistance transposon from Bacteroides, Plasmid 42 (1), 1-12 (1999), PubMed: 10413660.","","Fri May 4 12:01:58 MDT 2001","1","","7","PG0872" "PG0782.1","935559","936161","603","ATGGAATGGATTAATAATTTAATTGGTTTTGGATTGGGTGTATTGGCATCATGGATTGTTTGGTTTGTAGTAAGTAGGTGTATTGTTCCTCGAATTGAATTCTCCAAATATCTTAGCAGAACACAACCTAACTATCAAGACAACCCTTTGTACAGATTTCGCCTACGCAACAAAGGTCGAAGACAGGTTATAGACATTGACATTTTTTTTCGCATAAGAATCAAAGGAATAAACCCCAGGTTTCCAGACACATGGGAAATTATTCGAATTCCCCTGGGAAACCCTTACAATCATATACCTTTCCTTCCTGCTCCAAGCAAATCTAAATATGCTAGTCAGACTATATCCATTGAAGCTGGTTCTTGTGAAAAATTTTCCAGATCATTCATGCCAGAGGATATTAGAAAAAAGTACCACAAAAAAACTCTTACTCTAGATGATGTATTCTCTATCACAGAAGAAGTAGAAGGAGAAGTGATTGCTTTTGGATATGATGAATTTAGTGGAGCGAGAAAGATGTTCCGTTCTAAGAAATACAAAAAGGGAGATATTAGAGATGGAAGATTTAAACACAACTGCATGAGCATTGAATCTGCAAGCGAA","","","23588","MEWINNLIGFGLGVLASWIVWFVVSRCIVPRIEFSKYLSRTQPNYQDNPLYRFRLRNKGRRQVIDIDIFFRIRIKGINPRFPDTWEIIRIPLGNPYNHIPFLPAPSKSKYASQTISIEAGSCEKFSRSFMPEDIRKKYHKKTLTLDDVFSITEEVEGEVIAFGYDEFSGARKMFRSKKYKKGDIRDGRFKHNCMSIESASE","","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm, Periplasm","No significant hit found in gapped BLAST with E value less than e-04.","
noIPR
unintegrated
unintegrated
signalp\"[1-25]?signal-peptide
tmhmm\"[5-25]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","7","" "PG0783","936900","936205","696","ATGAGGCCTTTAAGCACTAACGATAACTATATTCCACAGCTTATCACGCTGGGATGTATTATGATTTTCTCTTTAGCCGTTCGTTCCATAGCACTGAATCGTGGAGCGGACGGCTTCACTGCATTCGGTTTGTTTATCCTTTCCACCTTGATTAACACTGCTCTTTTCTTGGCTATACAGTCTATACTACAAGACCTTTTTCTTCTTTTAATCAAGTTCCCAAAAGAAGAAAAGACAGTGGAGGTGTTCGACACTTCTCCCAAGATTCAGTTATCAAACTATGAACAATATCGTCAAGATGCTTTATTAGCAAAAGCAGAGGGAGAGCAGAACAAGATAAATACAGTCCTTTCCTATACAGAGAAAACACTCGCCCCTTACGTGGTAGAATCAGAACTCTCTAATCTTTGTACCCAAATCTCTCATTTCCTATCATCCGACTGGAAAGAAGAAGAGTGCCGAGAGATCAAAATATCATCTCAGTTAAAGAGCATAGATTTGATGCACTTCGGATGGAATATTGCCCAACCTTTTGGAAAATCACGCAAAGAGATCTCCACTTTTCTCAAATATACTTTTGCCCATGCACTGGAAGATGTAGAAGTGAGTACCCTCCAAAGAAAACTGACCAATACCGAAGGGAAATTCCTCATTCCTCTACAAGAAAAACTCTCTACTGAAAGCTATTCATCTTCA","5.50","-3.41","26322","MRPLSTNDNYIPQLITLGCIMIFSLAVRSIALNRGADGFTAFGLFILSTLINTALFLAIQSILQDLFLLLIKFPKEEKTVEVFDTSPKIQLSNYEQYRQDALLAKAEGEQNKINTVLSYTEKTLAPYVVESELSNLCTQISHFLSSDWKEEECREIKISSQLKSIDLMHFGWNIAQPFGKSRKEISTFLKYTFAHALEDVEVSTLQRKLTNTEGKFLIPLQEKLSTESYSSS","936900 936205","TIGR ID: PG0873","hypothetical protein","Outer membrane, Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
noIPR
unintegrated
unintegrated
PS51257\"[1-19]TPROKAR_LIPOPROTEIN


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Mar 8 16:39:49 MST 2001","","Thu Mar 8 16:39:49 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 8 16:39:49 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Mar 8 16:39:49 MST 2001","34540642","","","","","","1","","7","PG0873" "PG0784","938105","937005","1101","ATGAGACATACTTGTCCCAAAGTAACGCTCCGACAGAGAGCTATCAGAAACGGGCGTATATCGCTCTATCTCGATTATTATCCAGCTGTGCGCAATCCCGAAACCATGCAAATGAGCCGTCGGGAGTATCTCGGCATCTATATCTACGCCCATCCTAAGAATGAGATGGAGCGAGAGTTTAACATGGATATGTTGAACAAGGCGGAAGCTATTCGATGTATCCGTGTACAGTCGCTTATCAATGAAGAGTTTGGCTTTCTTGATCGAACTAAAATGAAAACCGACTTCCTTGCATACTTCTTGAAAATGTGTCGAAAGAAAGACCAAAAGTGGCGCATCGTCTATCAACACTTTTACAACTATGTGCAAGGACATTGCACATTTGGAGACATAACGATAGAGCTATGCCAAGGTTTTCGAGAGTACCTTCTCAACGCCAAGCAACTCAAACGAAAAGGAAAAGTCTCCACAAACTCTGCATCTGGCTACTATTCCACTTTTCGGGGGCTACTGAAGATTGCGTACCGAGATAAGTGGCTAAGGGAGAATATCAATGACTTTTTAGATAAGATAGAAGCTAAGGAGGTCAAGAAAGAGTATTTGACACTCGATGAAGTGAAGATACTTGCTCAGACACCCTGTGAGCATGATGTTCTGAAAAGAGCTTCTCTCTTCTCTTGCCTTACGGGGCTACGCATCAGCGATATTCTCAATCTCCGATGGGAAGATTTCACTCTTGCTCCTGACCAAGGCTATTGCATCCGCATCAGGACACAGAAGACCTCTACCGAAGCTACTCTCCCAATCAGTTATGAAGCTTATGAACTATGTGGAGAGCCATCATCGGGTAAAGTCTTCAAAGGCTTGCAGCGCAGTATGATCAATTATCCTTTGAAAAAATGGATTAAGCAGGCTGGGATTATGAAGCATATCACTTTTCACTGCTTTCGTCACTCTTATGCCGTGATACAGATTTCATTAGGTACAGATATTTATACGGTATCGAAGATGCTCACCCATAAGAATGTGTCCACAACCCAAATCTATGCCGACCTTGTAAACTCGAAAAAGCGTGAAACAGCTGAGAAGATTTCCCTAAAG","10.20","23.70","43186","MRHTCPKVTLRQRAIRNGRISLYLDYYPAVRNPETMQMSRREYLGIYIYAHPKNEMEREFNMDMLNKAEAIRCIRVQSLINEEFGFLDRTKMKTDFLAYFLKMCRKKDQKWRIVYQHFYNYVQGHCTFGDITIELCQGFREYLLNAKQLKRKGKVSTNSASGYYSTFRGLLKIAYRDKWLRENINDFLDKIEAKEVKKEYLTLDEVKILAQTPCEHDVLKRASLFSCLTGLRISDILNLRWEDFTLAPDQGYCIRIRTQKTSTEATLPISYEAYELCGEPSSGKVFKGLQRSMINYPLKKWIKQAGIMKHITFHCFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNSKKRETAEKISLK","938105 937005","TIGR ID: PG0874","integrase-recombinase protein","Cytoplasm","Residues 5-367 have 46% similarity to U75371, B. fragilis integrase.Residues 26-357 have 35% similarity to AF261825, S. enterica integrase.This sequence is similar to BT4549.","
InterPro
IPR002104
Domain
Integrase, catalytic core, phage
PF00589\"[228-359]TPhage_integrase
InterPro
IPR011010
Domain
DNA breaking-rejoining enzyme, catalytic core
SSF56349\"[198-362]TDNA_brk_join_enz
InterPro
IPR013762
Domain
Integrase-like, catalytic core, phage
G3DSA:1.10.443.10\"[199-362]TPhage_intgr_like


","BeTs to 13 clades of COG0582COG name: IntegraseFunctional Class: LThe phylogenetic pattern of COG0582 is aMtK-qvcEBRHUJ---LINXNumber of proteins in this genome belonging to this COG is 8","No significant hit to the Blocks database.","Residues 297-352 are 48% similar to a (INTEGRASE DNA PROTEIN RECOMBINATION INTEGRATION PLASMID) protein domain (PD000437) which is seen in O05723_BACFR.Residues 110-287 are 46% similar to a (INTEGRASE ORF6) protein domain (PD190723) which is seen in O05723_BACFR.Residues 5-108 are 51% similar to a (INTEGRASE) protein domain (PD209354) which is seen in O05723_BACFR.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Mar 8 16:38:20 MST 2001","Mon Jan 5 15:00:46 2004","Thu Mar 8 16:38:20 MST 2001","","Thu Mar 8 16:38:20 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG0784 shows weak similarity to:PG0735 Tn5520-like integrase (transfer factor)PG0736 Tn5520-like integrase (transfer factor)PG0749 possible transposase PG0994 transposase (integrase) PG1272 Tn5520-like integrase (transfer factor) PG1271 Tn5520-like integrase (transfer factor) PG1510 integrase/recombinase (XerD-related).","Wed Mar 14 17:04:59 MST 2001","Thu Mar 8 16:38:20 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 201 to 359 (E-value = 9.5e-12) place PG0784 in the Phage_integrase family which is described as Phage integrase family (PF00589)","Wed Mar 14 17:04:59 MST 2001","34540643","","","","","","1","","7","PG0874" "PG0785","939096","938197","900","ATGACAGCGAGCAAAATTCCAATAAAAAAAGTGTGTGAGCATTGCAAACAGGAGTTTATAGCTTTGAAGACGACTACCAAGTATTGCTCACATAGATGTAATAGCAGAGCCTACAAAGCTCAAAAAAGAGAAGAGAGGGTACGCAGAACAGAACTTTCTGAACAAGAGAAAAAGGTCAGTGATATTATAGACAAACCTTATCTCTCCATCTCAGAAGCTGGGCGATTACTTGGTATTAGTAGGCATACAATATATAGATATATCTACTCAGGGAACTTAAAGGCTTATAATTTGAGTTCTCAACGCTCAATCGTCAAGCGTGAAGACATTGAACGGATGTTGGCAGAGCGACCTTATGAGAAACGACAGCCCAGAGATGCAATCGTAATTACGGAACTATATACGACAGACGAGGTGTGCGATATCCACAACATATCTCGATCTTCTCTTTTTGCAATAGCCAAGCGAGAGAATATCCCTCGAACTTATAACAGAGGCAAGACCTATTGGAGCAAACGGCATATAGATGCCTATTTTGCTAAACAGGCTCCTGCTTCTCATATCGAAGAATGGTGTACAGCCGTGGAGATACAAGAAAGATTCGATATGACGCTCACAGCCGTTTACAACTTCATCTCTGATCACAACATCCCCAGAAAGAAAGTCAAGGGTAAAAGCTACTATTCCACCAAACATGTCGAAGCAGCTAAAGGAGTGCTTGATAAGGCAGCTCCAAGCTACTATACTGTTCGGGAGGCTATGGAAAAGTTTGGTCTTACTCGTGACCAGCTCTATCAATATACCAAACGTTATAATGTTCCTAAACTAAAGCAAGGTCGGAATGTCCTCATTTCTCAGCAAGAATTGGATGAAGTCCTCAAACCTCCCAGCATCACTCGA","10.40","21.65","35165","MTASKIPIKKVCEHCKQEFIALKTTTKYCSHRCNSRAYKAQKREERVRRTELSEQEKKVSDIIDKPYLSISEAGRLLGISRHTIYRYIYSGNLKAYNLSSQRSIVKREDIERMLAERPYEKRQPRDAIVITELYTTDEVCDIHNISRSSLFAIAKRENIPRTYNRGKTYWSKRHIDAYFAKQAPASHIEEWCTAVEIQERFDMTLTAVYNFISDHNIPRKKVKGKSYYSTKHVEAAKGVLDKAAPSYYTVREAMEKFGLTRDQLYQYTKRYNVPKLKQGRNVLISQQELDEVLKPPSITR","939147 938197","TIGR ID: PG0875","transposition protein , TnpA","Cytoplasm, Extracellular","Residues 12-293 have 27% similarity to U75371, B. fragilis TnpA .","
InterPro
IPR009057
Domain
Homeodomain-like
SSF46689\"[6-94]THomeodomain_like
InterPro
IPR009061
Domain
Putative DNA binding
SSF46955\"[66-117]T\"[132-182]T\"[246-293]TPutativ_DNA_bind
InterPro
IPR010093
Domain
Excisionase/Xis, DNA-binding
TIGR01764\"[67-116]Texcise


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 12-179 are 28% similar to a (TRANSPOSASE ORF5) protein domain (PD130510) which is seen in O05722_BACFR.Residues 186-293 are 27% similar to a (TRANSPOSASE) protein domain (PD206487) which is seen in O05722_BACFR.","","Thu Jun 14 13:55:24 MDT 2001","","Thu Jun 14 13:55:24 MDT 2001","Thu Jun 14 13:55:24 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:55:24 MDT 2001","Thu Jun 14 13:55:24 MDT 2001","","","Thu Mar 8 16:03:05 MST 2001","Mon Jun 18 09:37:06 MDT 2001","Thu Mar 8 16:03:05 MST 2001","","Mon Jun 18 09:34:40 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 8 16:03:05 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jun 18 09:34:40 MDT 2001","34540644","","","","","","1","","7","PG0875" "PG0786","940898","939345","1554","ATGATTTGTTTAGAGCGAGGAGCTTCGTTTCGTCCTCTGACTGAACTCCCTAATGGTTGTCCTGGTGCACATTGGTATTTATGGCACACCGCCTATCTTTGCAACCGATCTCATTCAATCCTGACCTCCAATATGTCTATCCTCCATTCCTTTAATAAGGACACCATCTGTGCCGTAGCCACTGCTCCGGGTGTGGGCGGTATTGCGGTGATTCGTGTGTCCGGTGCGGATGCTTTCCGCCTCGTTAGCCCACTTTTTCTATATCGTGGCAAGGCGATTGACCTCAGCGGAGCCAAGCCTCGCACCGCCCTCTATGGCGAAATCATGGAGGCGGACGAACTCATTGACGAAGTTATCCTAACGTGTTTCCATGGCCCGCACTCCTTCACTGCCGAGCATACAGTCGAGATTGCCTGCCATGGCTCCATATATATACGTAGACGTATTCTCGAGGCATTGATCAATCAGGGCTGTCGTCTGGCACAACCGGGCGAATTTACTCGCCGTGCCTACCTCAATGGGCGTATGGACCTGAGTAGTGCCGAGGCGGTGGCGGATATCATCGCCAGCGAGAGCAAGGCACAGCATCAGATGGCGATGAAGCAACTGCGTGGTGGATATAGCGAGGAACTGAATGCTCTGCGTGAGGAATTGCTTCGCCTTACGGGGCTGATGGAGTTGGAATTGGACTTCCCCGAAGAAGATGTGGAGTTCGCCGATCGTACCGAATTGCTTGCCCTCTGCGATCAAATCGAGCTCAAACTCAAGAAACTCATCGACAGCTATCGCCTTGGCAATGCTGTCAAGCGTGGGATTCCTGTGGCGATTGTTGGCACGACTAATGTGGGTAAGAGTACCCTGCTCAATACTTTGCTGGGCGAGGAGCGTGCCATCGTGAGCGATATTCACGGCACCACGCGCGACACCATCGAGGACACGATGCACATCGGAGGCTACCTCTTCCGCTTCGTCGATACGGCAGGACTGAGAGAGACCGAAGACACCATCGAGAGTCTTGGCATTGAGCGTAGCCGAAGCAAAATCAAAGAGGCAGATATTATCCTTGCCGTGGTGGACGGTACGCGCATCAGCGAGGCCAATCAGCTGGACTATATCAAAAGCATTTGGGACGAAAGGGAGGAGCGAACCCTCATTCTACTTGTAAACAAAAGCGAAAGCCTCGCCGAGGCCGACCGAATCGGACTCAGCGAGACTCTGCAAACGAAGCTCTCCACGCCCACGAAACCGATATTCATCTCAGCTCGTGAGGGTAGGGGGATAGATGAACTCAAGGGTGAACTTACCCAGATCATGGAGACTTCTGGCGCGAACGAAGCCGACCTCATTGTGAGCAATGCCCGCCATCATCAGCTCTTGCGGGAGGCTTTCGATGCCCTTCGGCGAATGCGTTTGGGCTTTGATATGGGACTCTCGACCGACTTGCTAACGCTCGACCTAAGGCACGCCATCACCTCCATCGGCGAAATTACCGGCCGCGAAATCACCAGCGACGACACCCTGCACTACATCTTCGCCCACTTCTGCATCGGCAAG","5.40","-15.51","57501","MICLERGASFRPLTELPNGCPGAHWYLWHTAYLCNRSHSILTSNMSILHSFNKDTICAVATAPGVGGIAVIRVSGADAFRLVSPLFLYRGKAIDLSGAKPRTALYGEIMEADELIDEVILTCFHGPHSFTAEHTVEIACHGSIYIRRRILEALINQGCRLAQPGEFTRRAYLNGRMDLSSAEAVADIIASESKAQHQMAMKQLRGGYSEELNALREELLRLTGLMELELDFPEEDVEFADRTELLALCDQIELKLKKLIDSYRLGNAVKRGIPVAIVGTTNVGKSTLLNTLLGEERAIVSDIHGTTRDTIEDTMHIGGYLFRFVDTAGLRETEDTIESLGIERSRSKIKEADIILAVVDGTRISEANQLDYIKSIWDEREERTLILLVNKSESLAEADRIGLSETLQTKLSTPTKPIFISAREGRGIDELKGELTQIMETSGANEADLIVSNARHHQLLREAFDALRRMRLGFDMGLSTDLLTLDLRHAITSIGEITGREITSDDTLHYIFAHFCIGK","940898 939345","TIGR ID: PG0876","thiophene and furan oxidation protein (GTPase)","Cytoplasm","Numerous significant hits to thiophene and furan oxidation proteins in gapped BLAST; e.g. residues 53-518 are 38% similar to gb|AAC06992.1| thiophene and furan oxidation protein of Aquifex aeolicus, residues 54-518 are 36% similar to gb|AAK06340.1|AE006453_4 GTP-binding protein ThdF of Lactococcus lactis subsp. lactis, residues 54-518 are 34% similar to gb|AAF73529.1| thiophene and furan oxidation protein ThdF of Chlamydia muridarum.This sequence is similar to BT4551.","
InterPro
IPR002917
Domain
GTP-binding protein, HSR1-related
PF01926\"[272-392]TMMR_HSR1
InterPro
IPR004520
Family
tRNA modification GTPase TrmE
TIGR00450\"[60-518]TthdF: tRNA modification GTPase TrmE
InterPro
IPR005225
Domain
Small GTP-binding protein domain
TIGR00231\"[269-436]Tsmall_GTP: small GTP-binding protein domain
InterPro
IPR005289
Domain
GTP-binding
TIGR00650\"[277-328]TMG442: GTP-binding conserved hypothetical p
InterPro
IPR006073
Domain
GTP1/OBG
PR00326\"[274-294]T\"[341-359]TGTP1OBG
InterPro
IPR013173
Domain
DNA primase DnaG, DnaB-binding
SM00766\"[283-406]Tno description
noIPR
unintegrated
unintegrated
G3DSA:3.30.1360.120\"[47-175]Tno description
G3DSA:3.40.50.300\"[265-443]Tno description
PTHR11649\"[98-518]TMSS1/TRME-RELATED GTP-BINDING PROTEIN
PTHR11649:SF15\"[98-518]TTRNA MODIFICATION GTPASE TRME


","BeTs to 12 clades of COG0486COG name: Predicted GTPases, ThdF familyFunctional Class: RThe phylogenetic pattern of COG0486 is ----yqvceb-hujgpolinxNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 318-392 are 42% similar to a (PROTEIN GTP-BINDING ERA HOMOLOG OXIDATION HFLX PUTATIVE) protein domain (PD002733) which is seen in THDF_BACSU.Residues 99-269 are 33% similar to a (PROTEIN OXIDATION THIOPHENE FURAN) protein domain (PD004624) which is seen in O67030_AQUAE.Residues 274-390 are 52% similar to a (PROTEIN GTP-BINDING LIPOPROTEIN PRENYLATION RAS-RELATED) protein domain (PD000015) which is seen in O67030_AQUAE.Residues 272-310 are 74% similar to a (PROTEIN GTP-BINDING INTERGENIC REGION HOMOLOG ERA IRON) protein domain (PD000414) which is seen in P74120_SYNY3.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Mar 22 11:31:52 MST 2000","Mon Jan 5 15:02:19 2004","Wed Mar 14 17:25:11 MST 2001","","Wed Mar 14 17:25:11 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG0786 shows weak similarity to:PG0711 GTP-binding proteinPG0930 probable ferrous iron transport protein BPG1641 HFLX-related GTP-binding proteinPG1873 GTP-binding proteinPG1874 probable GTP binding protein.","Wed Mar 14 17:25:11 MST 2001","Wed Mar 14 17:25:11 MST 2001","-58% similar to PDB:1XZP Structure of the GTP-binding protein TrmE from Thermotoga maritima (E_value = 5.1E_79);-58% similar to PDB:1XZQ Structure of the GTP-binding protein TrmE from Thermotoga maritima complexed with 5-formyl-THF (E_value = 5.1E_79);-57% similar to PDB:1RFL NMR data driven structural model of G-domain of MnmE protein (E_value = 2.2E_26);-57% similar to PDB:2GJ8 Structure of the MnmE G-domain in complex with GDP*AlF4-, Mg2+ and K+ (E_value = 2.5E_25);-57% similar to PDB:2GJ9 Structure of the MnmE G-domain in complex with GDP*AlF4-, Mg2+ and Rb+ (E_value = 2.5E_25);","","","Residues 199 to 392 (E-value = 5.3e-06) place PG0786 in the MMR_HSR1 family which is described as GTPase of unknown function (PF01926)","Wed Mar 14 17:25:11 MST 2001","34540645","","","","","","1","","","PG0876" "PG0787","941637","940933","705","TTGACATACAGAGTACTGGATCCCAATGCACAGGAGGGAAGTCCCACCGAAGTACTTGTCCGCATGTATAGCCATCCGCAGCTTCGGCGTTTGTATGCCGATACGGAAGCCTGCTATACAACTGCTTTGGCCGACTCCATAACCGGAGAGATGAGGGCCGCATTCGAGCGATTGCGTGTATCGGATCCGCAGATGGCCATACCACGTTACGTGGCCTTTCATGTCAGTGGCTTGCAACAGAGCGTCGTCGCTGTACCGGATCTGGTATCCGTTTCGATAGACAAGTATATCCGTCCCGACTATCCCGTGTATCTGCAGTTTTTCAGCGAGTATGCGCGCCAAACCATGTCGCCCGAATATGTAGTGCGCGATGCTGTATTGGGCTGGATATGCTCCGAACGTCCGTTGCCTCGGGAGACGGTACTGACCTTGCGGTTCCAATTGGAGTATTGGGGCGATATATATCGGTTGATGAAGCAGGTTTTCCCTCAAGCCTCGGACGAATGGCTGTTCGGTTTTACCTCGGATCAATTGCTTTGGATGAAGCAAAACAGGAAAATCCTATTGGACAATGCTCTTAAACGCGGCGAGATGGAGTCTTCTCAGCCGACTGTCACGGATCGGTACTTCAAGGAGTTGCCTCCCGATCAGCTGTTACCTCCCGAAGCTCCTCGCCTGATCGGTCATTGGCTTGGAACCAACCTG","5.50","-3.37","27258","LTYRVLDPNAQEGSPTEVLVRMYSHPQLRRLYADTEACYTTALADSITGEMRAAFERLRVSDPQMAIPRYVAFHVSGLQQSVVAVPDLVSVSIDKYIRPDYPVYLQFFSEYARQTMSPEYVVRDAVLGWICSERPLPRETVLTLRFQLEYWGDIYRLMKQVFPQASDEWLFGFTSDQLLWMKQNRKILLDNALKRGEMESSQPTVTDRYFKELPPDQLLPPEAPRLIGHWLGTNL","941841 940933","TIGR ID: PG0877","conserved hypothetical protein","Cytoplasm, Periplasm","This sequence corresponds to gi:34396960 in Genbank.Its nearest neighbor in the NR database is gi:53712265 from Bacteroides fragilis YCH46.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 13:56:42 MDT 2001","","Thu Jun 14 13:56:42 MDT 2001","Thu Jun 14 13:56:42 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:56:42 MDT 2001","Thu Jun 14 13:56:42 MDT 2001","","","Fri Mar 4 10:20:32 2005","Fri Mar 4 10:20:32 2005","Thu Mar 8 15:57:03 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 8 15:57:03 MST 2001","-45% similar to PDB:1U6G Crystal Structure of The Cand1-Cul1-Roc1 Complex (E_value = );-50% similar to PDB:1P22 Structure of a beta-TrCP1-Skp1-beta-catenin complex: destruction motif binding and lysine specificity on the SCFbeta-TrCP1 ubiquitin ligase (E_value = );-45% similar to PDB:1U46 Crystal Structure of the Unphosphorylated Kinase Domain of the Tyrosine Kinase ACK1 (E_value = );-45% similar to PDB:1U4D Structure of the ACK1 Kinase Domain bound to Debromohymenialdisine (E_value = );-45% similar to PDB:1U54 Crystal Structures of the Phosphorylated and Unphosphorylated Kinase Domains of the CDC42-associated Tyrosine Kinase ACK1 bound to AMP-PCP (E_value = );","","","No significant hits to the Pfam 11.0 database","Mon Jun 18 09:39:21 MDT 2001","34540646","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Fri Mar 4 10:20:32 2005","","1","","","PG0877" "PG0787.1","942628","942026","603","ATGCAACACGCTATAAACAAAAACACACCGAGGGGTAATCGCATTTCAGCCACTAACGTACATCTAAAGCTCATGATTGCTACGCTCAGTTATCAAACAAGTACGAATTCATTTGTCAGAGATTCAAATTATAGAGGAAAGAGACTAAAAATTTTCAAACGCAATCGCCCTGACCATCTGTCCGATATGGGATCCATGGTATTATATCGTCTTCCTCCTCATTGGTATTGTTGGCTGCTACTGTGTACCGACGCGGTAGCCGGATGGATTATTGGAGCCGGAGGAGGTATCGGCTCGTATGGACGCAATGTGAATCAGACGCCACAGCGTGGCACACAAAGTGCATACACGGGTAGCGAAGCGATGGTTGGAGGAGCACAAGTGCTGTTGCCGGTCATGTCGTTGAATGTCTCAAAGGGGCACTCATTAAAGGGGAGTAAATTTCCACTAGTGGAAAAAGAAGTTTCCACTGGTGGAAAGTTTATTTTCCACGGGAGGAAAGATATCTTTCCACTGGTGGAAAACCGGCGTGTACCAAATAGTCGCCTGACACACAATAAGAAGAATAAACAAAAGCGCCTGCTTATTGTGCAAAGGTCCCAT","","","22510","MQHAINKNTPRGNRISATNVHLKLMIATLSYQTSTNSFVRDSNYRGKRLKIFKRNRPDHLSDMGSMVLYRLPPHWYCWLLLCTDAVAGWIIGAGGGIGSYGRNVNQTPQRGTQSAYTGSEAMVGGAQVLLPVMSLNVSKGHSLKGSKFPLVEKEVSTGGKFIFHGRKDIFPLVENRRVPNSRLTHNKKNKQKRLLIVQRSH","","TIGR ID: PG0879","hypothetical protein","Extracellular","No hit found in gapped BLAST.","
InterPro
IPR012424
Family
Homologues of TraJ from Bacteroides conjugative transposon
PF07863\"[78-146]TCtnDOT_TraJ


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Thu Mar 8 15:51:57 MST 2001","","Thu Mar 8 15:50:51 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 82-201 have 82% similarity to PG1563.Residues 82-201 have 70% simialrity to PG1941.1 .Residues 82-201 have 68% simialrity to PG0455.","Thu Mar 8 15:50:51 MST 2001","Thu Mar 8 15:50:51 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Mar 8 15:50:51 MST 2001","34540647","","","","","","1","","","PG0879" "PG0788","942681","943181","501","ATGACCTTTTTGTTACCTTTGTTTGATATAATTCAGACAGACGGAGCAATGATACAAATAGGAGACCGTATTCCTGAGATTCTTGGGATAGACCAAGACGGGAACGAGGTCAAAAGAGACGATTATCGCGGACGAAAGATCGCACTATATTTCTACCCCAAAGACAATACTTCGGGATGTACGGCGCAGGCATGCAGCCTGCGCGACAGTCATAGCACACTTCGTGCTGCCGGCTACGAAATCATCGGAGTGAGTCGTGATTCGGCCAAGAGCCATCGCAATTTCCGAGAAAAGTACGAGCTTCCTTTTCCGCTGATCGTGGATGAGGAAGTGCGTCTCAACGAACTTTTCGGTGTTTGGGTGGAAAAAAGCATGTACGGACGCAAATATATGGGGACCGAGCGCACTACTTTCCTCACGGATAAGGAGGGCGTAGTCACACGCATCATCAGAGGCAAAGAGGTCAAGACCAAAGACCATGCCGATCAGATACTAAACGGA","6.80","-0.37","19081","MTFLLPLFDIIQTDGAMIQIGDRIPEILGIDQDGNEVKRDDYRGRKIALYFYPKDNTSGCTAQACSLRDSHSTLRAAGYEIIGVSRDSAKSHRNFREKYELPFPLIVDEEVRLNELFGVWVEKSMYGRKYMGTERTTFLTDKEGVVTRIIRGKEVKTKDHADQILNG","942681 943181","TIGR ID: PG0880","bacterioferritin comigratory protein","Cytoplasm","This sequence corresponds to gi:34396962 in Genbank.Its nearest neighbor in the NR database is gi:53712506 from Bacteroides fragilis YCH46.","
InterPro
IPR000866
Domain
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
PF00578\"[20-149]TAhpC-TSA
InterPro
IPR012335
Domain
Thioredoxin fold
G3DSA:3.40.30.10\"[14-166]TThioredoxin_fold
InterPro
IPR012336
Domain
Thioredoxin-like fold
SSF52833\"[1-166]TIPR012336
noIPR
unintegrated
unintegrated
PTHR10681\"[17-166]TPTHR10681
PTHR10681:SF5\"[17-166]TPTHR10681:SF5


","BeTs to 8 clades of COG1225COG name: PeroxiredoxinsFunctional Class: OThe phylogenetic pattern of COG1225 is ----yQVCeBRhuj-------Number of proteins in this genome belonging to this COG is 1","***** PF00578 (AhpC/TSA family) with a combined E-value of 6.7e-10. PF00578A 44-63 PF00578B 85-95 PF00578C 126-137","Residues 21-93 are 49% similar to a (PROTEIN PEROXIDASE ANTIOXIDANT REDUCTASE THIOREDOXIN) protein domain (PD000498) which is seen in O66785_AQUAE.Residues 95-166 are 41% similar to a (ANTIOXIDANT PROTEIN PEROXIDASE REDUCTASE THIOREDOXIN) protein domain (PD000721) which is seen in BCP_ECOLI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Mar 8 15:47:13 MST 2001","Wed Mar 23 15:01:17 2005","Thu Mar 8 15:47:13 MST 2001","Thu Mar 8 15:47:13 MST 2001","Thu Mar 8 15:47:13 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 23 15:01:17 2005","-51% similar to PDB:2A4V Crystal Structure of a truncated mutant of yeast nuclear thiol peroxidase (E_value = 8.4E_10);","","","Residues 20 to 165 (E-value = 2.1e-22) place PG0788 in the AhpC-TSA family which is described as AhpC/TSA family (PF00578)","Thu Mar 8 15:47:13 MST 2001","34540648","","Vanterpool E, Roy F, Fletcher HM.The vimE gene downstream of vimA is independently expressed and is involved in modulating proteolytic activity in Porphyromonas gingivalis W83.Infect Immun. 2004 Oct;72(10):5555-64.PMID: 15385452","","Wed Mar 23 15:09:50 2005","","1","","","PG0880" "PG0789","943205","944224","1020","ATGGCAGAAGAAAAGATACCCACGGTGCAGGATGAGAAGAAACTGCAAGCCCTGCGAATGGCCACGGAGAAGATAGAGAAGACTTTCGGAAAAGGTGCTATCATGAATATGGGAGCCAATACGGTGGAAGATGTAAGCGTTATCCCCTCCGGCTCCATCGGTTTGGATTTGGCTCTCGGTGTAGGCGGTTACCCTCGCGGACGTATTATCGAGATATACGGACCGGAATCTTCCGGTAAGACCACTCTGGCTATCCATGCCATTGCCGAAGCGCAGAAAGCAGGTGGCTTGGCGGCCATCATCGATGCGGAACATGCTTTCGACCGCACCTATGCCGAAAAGTTGGGCGTCAATGTGGATAATCTCTGGATAGCACAGCCGGACAACGGTGAACAGGCTTTGGAAATCGCCGAGCAACTGATTCGCTCTTCTGCTGTCGACATTATAGTCATTGACTCTGTCGCAGCCCTCACGCCCAAAGCGGAAATAGAGGGTGAAATGGGGGACAACAAGGTTGGTTTGCATGCCCGTCTGATGTCGCAAGCACTGCGTAAGATGACCGGAGCCATCAGCAAATCCAATACAACCTGTATCTTCATCAACCAGCTACGAGAGAAGATCGGTGTTTTGTTCGGCAATCCGGAGACCACCACAGGGGGGAATGCACTGAAATTCTATGCATCCATCCGCATCGACATTCGCAAGAGCACACCGATCAAGGATGGCGAAGAGATCATGGGACACCTGACCAAGGTGAAAGTGTTGAAAAACAAGGTGGCTCCTCCATTCCGCAAAGCAGAGTTCGACATCGTATTCGGAGAAGGTATTTCGCGTTCCGGCGAGATTATCGATTTGGGTGTAGAGCTGGATATTATCAAGAAGAGCGGATCGTGGTTCAGCTATGGCGATACGAAGCTGGGACAGGGACGTGAGGCTGCCAAGGAAATGATTCGGGACAATGAGGAATTGGCCGAAGAACTGACTGAAAAAATACGCGAAGCCATTCGCAACAAACATTCA","5.60","-4.81","36875","MAEEKIPTVQDEKKLQALRMATEKIEKTFGKGAIMNMGANTVEDVSVIPSGSIGLDLALGVGGYPRGRIIEIYGPESSGKTTLAIHAIAEAQKAGGLAAIIDAEHAFDRTYAEKLGVNVDNLWIAQPDNGEQALEIAEQLIRSSAVDIIVIDSVAALTPKAEIEGEMGDNKVGLHARLMSQALRKMTGAISKSNTTCIFINQLREKIGVLFGNPETTTGGNALKFYASIRIDIRKSTPIKDGEEIMGHLTKVKVLKNKVAPPFRKAEFDIVFGEGISRSGEIIDLGVELDIIKKSGSWFSYGDTKLGQGREAAKEMIRDNEELAEELTEKIREAIRNKHS","943205 944224","TIGR ID: PG0881","recA protein","Cytoplasm","This sequence corresponds to gi:37538300 in Genbank.Its nearest neighbor in the NR database is gi:60393008 from Bacteroides thetaiotaomicron.","
InterPro
IPR001553
Family
RecA bacterial DNA recombination
PD000229\"[165-213]TRecA
PR00142\"[45-67]T\"[71-100]T\"[102-131]T\"[136-165]T\"[174-203]T\"[219-247]T\"[252-281]T\"[306-323]TRECA
TIGR02012\"[13-333]Ttigrfam_recA
PS00321\"[222-230]TRECA_1
PS50162\"[44-207]TRECA_2
PS50163\"[208-281]TRECA_3
InterPro
IPR003593
Domain
AAA+ ATPase, core
SM00382\"[66-237]TAAA
InterPro
IPR013765
Domain
RecA
PF00154\"[16-337]TRecA
noIPR
unintegrated
unintegrated
G3DSA:3.30.250.10\"[278-336]TG3DSA:3.30.250.10
G3DSA:3.40.50.300\"[35-277]TG3DSA:3.40.50.300
PTHR22942\"[12-336]TPTHR22942
PTHR22942:SF1\"[12-336]TPTHR22942:SF1
SSF52540\"[11-276]TSSF52540
SSF54752\"[277-336]TSSF54752


","BeTs to 17 clades of COG0468COG name: RecA/RadA recombinaseFunctional Class: LThe phylogenetic pattern of COG0468 is AMTKYqvcebRhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB001553 (RecA bacterial DNA recombination protein) with a combined E-value of 1.7e-163. IPB001553A 13-39 IPB001553B 58-111 IPB001553C 140-183 IPB001553D 198-231 IPB001553E 275-328","Residues 17-334 are 99% similar to a (PROTEIN DNA ATP-BINDING DNA-BINDING RECOMBINATION DAMAGE) protein domain (PD000229) which is seen in RECA_PORGI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Wed Mar 23 11:43:23 2005","Thu Apr 11 16:00:35 2002","Wed Mar 23 11:40:48 2005","Thu Apr 11 16:00:35 2002","Sat Jun 2 08:56:13 MDT 2001","Sat Jun 2 08:56:13 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 23 11:40:48 2005","-84% similar to PDB:1UBC Structure of Reca Protein (E_value = 1.4E_121);-84% similar to PDB:1UBE MsRecA-ADP Complex (E_value = 1.4E_121);-84% similar to PDB:1UBF MsREcA-ATPgS complex (E_value = 1.4E_121);-84% similar to PDB:1UBG MsREcA-dATP complex (E_value = 1.4E_121);-84% similar to PDB:2G88 MSRECA-dATP COMPLEX (E_value = 1.4E_121);","","","Residues 16 to 337 (E-value = 9.9e-222) place PG0789 in the RecA family which is described as recA bacterial DNA recombination protein (PF00154)","Sat Jun 2 08:56:13 MDT 2001","34540649","","Vanterpool E, Roy F, Fletcher HM.The vimE gene downstream of vimA is independently expressed and is involved in modulating proteolytic activity in Porphyromonas gingivalis W83.Infect Immun. 2004 Oct;72(10):5555-64.PMID: 15385452Koehler A, Karch H, Beikler T, Flemmig TF, Suerbaum S, Schmidt H.Multilocus sequence analysis of Porphyromonas gingivalis indicates frequent recombination.Microbiology. 2003 Sep;149(Pt 9):2407-15.PMID: 12949166Liu Y, Fletcher HM.The recA gene in Porphyromonas gingivalis is expressed during infection of the murine host.Oral Microbiol Immunol. 2001 Aug;16(4):218-23.PMID: 11442846Liu Y, Fletcher HM.Environmental regulation of recA gene expression in Porphyromonas gingivalis.Oral Microbiol Immunol. 2001 Jun;16(3):136-43.PMID: 11358535Abaibou H, Ma Q, Olango GJ, Potempa J, Travis J, Fletcher HM.Unaltered expression of the major protease genes in a non-virulent recA-defective mutant of Porphyromonas gingivalis W83.Oral Microbiol Immunol. 2000 Feb;15(1):40-7.PMID: 11155163Fletcher HM, Morgan RM, Macrina FL.Nucleotide sequence of the Porphyromonas gingivalis W83 recA homolog and construction of a recA-deficient mutant.Infect Immun. 1997 Nov;65(11):4592-7.PMID: 9353038","Roca AI, Cox MM.RecA protein: structure, function, and role in recombinational DNA repair.Prog Nucleic Acid Res Mol Biol. 1997;56:129-223.PMID: 9187054","Wed Mar 23 11:43:23 2005","Wed Mar 23 11:47:37 2005","1","","","PG0881" "PG0790","944337","945263","927","ATGCCCATCCCTCTATACCTGCAGGATTGGTGGCTGGATGCTGTATGCGGTTTCGATGAATGGATGGCTTTCGTCCTTGAGGAGGAAGGGACGGTTTCAGGTGTGATGCCCTGCTATATGCCGGTACCCGGTCATATCAGCATGCCGCCCTTCACCCAGTTTTTGGGATCCTACAGTTTCATAGGTATAAACGAAGACAGCACGACCTCCTTTCGTGCCCATCGTAGGGTACACGATATGTTGCGCTCCATGCTTCCGCCTCATAAGTCCTTTATGGTACAATACTCCAAGGATTTTACCGATTGGCTCCCTTATTACTGGCAAGGTTACTCTCAGACTACGCGATATACGTACAGGATAGATCTAAGCCCTGGAATCGATGTCGTACGGATGGCTATTCGCCCCGACGCCATGAAGAAGATACGTAAGGCTGAAAGAGACGGACTCCGCTGTACGTCGGCCACGGTGGACGACCTGCTGCGCCTCTGCCGTATATCCATGTCCCGACAGGAAGCAAAAGGATTTGCAGCGGAGACATTGCAGCGGCTGGCGGAAGTCGCCATCGAAAGGCATGCAGGTGAAATAGTCGGTTGTGAAGATAGCGAAGGGCGTCTACTGGCTGCCGTCTTCCTCGCCCACGATCATAACACGGCCTACACGATTGCTTCCGGCCAAATTCGTGAAGGACAGGGGCGCAATGCCGGAGCTTTTGTCCTGTATGAGGCCATTTGGAGGGCTTGTGAGATGGAAGGCATTCATACATTTGACTTCGAAGGTTCCATGTTGGAGGGGATAGAGGGATTCTTCCGCTCGTTCGGAGGTATCCAAACACCTTATTTCCGACTGTCCAAAGGTCGGATTGGCTTATATGGCCGACTAAGACGTAAATGGCGAGCCTTTCATGATACCGGTCAGCAAAAACAGGTA","7.20","0.90","35392","MPIPLYLQDWWLDAVCGFDEWMAFVLEEEGTVSGVMPCYMPVPGHISMPPFTQFLGSYSFIGINEDSTTSFRAHRRVHDMLRSMLPPHKSFMVQYSKDFTDWLPYYWQGYSQTTRYTYRIDLSPGIDVVRMAIRPDAMKKIRKAERDGLRCTSATVDDLLRLCRISMSRQEAKGFAAETLQRLAEVAIERHAGEIVGCEDSEGRLLAAVFLAHDHNTAYTIASGQIREGQGRNAGAFVLYEAIWRACEMEGIHTFDFEGSMLEGIEGFFRSFGGIQTPYFRLSKGRIGLYGRLRRKWRAFHDTGQQKQV","944298 945263","TIGR ID: PG0882","possible virulence-modulating gene, VimA","Cytoplasm","This sequence corresponds to gi:34396964 in Genbank.Its nearest neighbor in the NR database is gi:38637776 from Cupriavidus necator.","
InterPro
IPR008921
Domain
DNA polymerase III clamp loader subunit, C-terminal
SSF48019\"[25-78]TPol_clamp_load_C
noIPR
unintegrated
unintegrated
G3DSA:3.40.630.30\"[116-272]TG3DSA:3.40.630.30
SSF55729\"[124-281]TSSF55729


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 1-309 are 96% similar to a (HYPOTHETICAL 35.6 KD PROTEIN) protein domain (PD214651) which is seen in Q9ZHF8_PORGI.","","Thu Jun 14 13:57:19 MDT 2001","","Thu Jun 14 13:57:19 MDT 2001","Thu Jun 14 13:57:19 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:57:19 MDT 2001","Thu Jun 14 13:57:19 MDT 2001","","Wed Mar 23 12:04:16 2005","Wed Mar 23 12:04:16 2005","Wed Mar 23 12:04:16 2005","Thu Mar 8 14:58:35 MST 2001","","Mon Jun 18 09:43:36 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Jul 2 15:09:48 2008","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jun 18 09:43:36 MDT 2001","34540650","Thu Mar 8 14:58:35 MST 2001","Vanterpool E, Roy F, Sandberg L, Fletcher HM.Altered gingipain maturation in vimA- and vimE-defective isogenic mutants of Porphyromonas gingivalis.Infect Immun. 2005 Mar;73(3):1357-66.PMID: 15731033Vanterpool E, Roy F, Fletcher HM.The vimE gene downstream of vimA is independently expressed and is involved in modulating proteolytic activity in Porphyromonas gingivalis W83.Infect Immun. 2004 Oct;72(10):5555-64.PMID: 15385452Olango GJ, Roy F, Sheets SM, Young MK, Fletcher HM.Gingipain RgpB is excreted as a proenzyme in the vimA-defective mutant Porphyromonas gingivalis FLL92.Infect Immun. 2003 Jul;71(7):3740-7.PMID: 12819055Abaibou H, Chen Z, Olango GJ, Liu Y, Edwards J, Fletcher HM.vimA gene downstream of recA is involved in virulence modulation in Porphyromonas gingivalis W83.Infect Immun. 2001 Jan;69(1):325-35.PMID: 11119521Vanterpool E, Roy F, Zhan W, Sheets SM, Sangberg L, Fletcher HM., VimA is part of the maturation pathway for the major gingipains of Porphyromonas gingivalis W83., Microbiology. 2006 Nov; 152(Pt11):3383-9. PMID: 17074907 ","","Wed Jul 2 15:09:48 2008","","1","","","PG0882" "PG0791","945263","946621","1359","ATGAATACTGAAGTAATCCACTACATCATTCGCTTTCTGATCGGAGATGAAAGCGGAAACGATCAGCTCCTCAGTCGCATCGGTTATACCTCGAAGCAGAGCGAGATGTCCCGATACAGCATTGTCATCCGTGCTTCAAACTTCTTCGATTCGGATATTTACGGTACCGATAAGGCTTTTCCCTTGTTACCGCTGAAAGAATGGGAGGGCGTACCTCTCCTTTTTGGAGAGCCGACCGAAGAGCTGTTGGAAGAGAGCGACACACTGGTGCTGAATGCCGACATTGTCGCCTCTACATATTTTCTGATCTCCCGCTACGAAGAGATGTACCGGCGTAAACTTCGAGATATACACGGACGATTTCCGGGAAGAGAGTCCTTGCCTTTCAAAGCAGGATTTCTACAGCGTCCTGTAGTAGATGAATACGGGGCCATTCTGCGCACCAAAATTCGTCAGATGGGCTGGCCGGTAAAAGACCCAGTCCCCCATTTCTCCATGGTGAATCTGACGCATGACGTAGACGAACCGTTCGAGTACAGAGGATGGAGAAGTTTTGCCCGAGCATTGATCAAGGAACGCAAATCTCCCTTCAAGGCTTTCCGTCTGGCTTATGCCAATCCGGCAAGTGATCGTTTCTTCACTTTTCCCCGTTTTGTGGATTGGGATAAAATATTGCGCAGCAAAATGCCGGATTGCTGTCGGATTATCTTCTTCTTCAAAGCACCCGGAAAGGCCCCACAGGATGCACCGAACTATTCGCTGAGAAAACCGCTCTATCAATCGCTCCGATCTTTGGTTAAAAACAATGGAATAGTGATAGGGCTTCACAGCAACTACTCTGCCGGTCTGAACCCAGAACTGATCGGAAAGCAGCGCAAGCGACTTATGAGCGATACCGATATGGCAGTCGACTGCAACAGGCATCACTACCTTGCAGCTCGTGAGCCGGAGGACATGCAAGCCCTGATCTCGGCAGGTATCAGACACGATTATACCATGGGGTATGCCGATGTTGCAGGTTTCCGCCTTGGTACATCCCGTCCCGTTCGCTTCATTATGCCTTCCACAAGACGGCTGACCGAGCTGATCCTGCACCCACTTACACTGATGGATTGTACGCTGCACAGGCAAGAGTATATGGGCCTGGACGAAGCTACGGCCATAGAGTTGTGCAAGGAACTGCTGATGCATACTTTCATCCACGGAGGAGAAGCCACACTCCTTTGGCACAACGAATATCTCTCTCGCGACATTCATCCCTGGCATGCCCGTTTGTATCGAGAAGTACTGAGGCTGATAGAAACCATGGAGGAAAAACAAGAGGAGGAATCTTTCGACTACGAAACGGCCATCGACCAA","6.90","-0.58","52744","MNTEVIHYIIRFLIGDESGNDQLLSRIGYTSKQSEMSRYSIVIRASNFFDSDIYGTDKAFPLLPLKEWEGVPLLFGEPTEELLEESDTLVLNADIVASTYFLISRYEEMYRRKLRDIHGRFPGRESLPFKAGFLQRPVVDEYGAILRTKIRQMGWPVKDPVPHFSMVNLTHDVDEPFEYRGWRSFARALIKERKSPFKAFRLAYANPASDRFFTFPRFVDWDKILRSKMPDCCRIIFFFKAPGKAPQDAPNYSLRKPLYQSLRSLVKNNGIVIGLHSNYSAGLNPELIGKQRKRLMSDTDMAVDCNRHHYLAAREPEDMQALISAGIRHDYTMGYADVAGFRLGTSRPVRFIMPSTRRLTELILHPLTLMDCTLHRQEYMGLDEATAIELCKELLMHTFIHGGEATLLWHNEYLSRDIHPWHARLYREVLRLIETMEEKQEEESFDYETAIDQ","945263 946621 [Shorter 1025 247 99]","TIGR ID: PG0883","possible virulence-modulating gene, VimE","Cytoplasm","This sequence corresponds to gi:34540651 in Genbank.Its nearest neighbor in the NR database is gi:48841412 from Methanosarcina barkeri str. fusaro.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Mar 23 14:42:01 2005","Wed Mar 23 14:42:01 2005","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 23 14:42:01 2005","-42% similar to PDB:1K20 Inorganic Pyrophosphatase (family II) from Streptococcus gordonii at 1.5 A resolution (E_value = );-64% similar to PDB:2DBQ Crystal Structure of Glyoxylate Reductase (PH0597) from Pyrococcus horikoshii OT3, Complexed with NADP (I41) (E_value = );-64% similar to PDB:2DBR Crystal Structure of Glyoxylate Reductase (PH0597) from Pyrococcus horikoshii OT3, Complexed with NADP (P1) (E_value = );-64% similar to PDB:2DBZ Crystal Structure of Glyoxylate Reductase (PH0597) from Pyrococcus horikoshii OT3, Complexed with NADP (P61) (E_value = );-75% similar to PDB:1GQT ACTIVATION OF RIBOKINASE BY MONOVALENT CATIONS (E_value = );","","","No significant hits to the Pfam 11.0 database","","34540651","","Vanterpool E, Roy F, Sandberg L, Fletcher HM.Altered gingipain maturation in vimA- and vimE-defective isogenic mutants of Porphyromonas gingivalis.Infect Immun. 2005 Mar;73(3):1357-66.PMID: 15731033Vanterpool E, Roy F, Fletcher HM.The vimE gene downstream of vimA is independently expressed and is involved in modulating proteolytic activity in Porphyromonas gingivalis W83.Infect Immun. 2004 Oct;72(10):5555-64.PMID: 15385452","","Wed Mar 23 14:45:20 2005","","1","","","PG0883" "PG0792","946621","947868","1248","ATGAAACGGGTACTCATCTTCGCCGATATCTTCCCTCCGGCTTTTGCTCCGAGAGCTGCCTATCTGACCAAATATCTGCCTCGATTTGGTTGGGAACCTTTTGTAATAACGGAAAAAATGCCGACTCCGGCATCCCAGTCGCACGGCGATGTGTTTGGTGGATTTTGCAGTGATATTCCGGTAACGGCTATCGATCTCTCTTCGGCTTCGTTTCTGTCTCAAGCGATTCGTTCAGCTCGTCTGTTCGGCGAATTGTTTTGGGAGCAGAAAGAAGAGCGATTCTACAAAGAAGCGGCGAAAGCTTTTCCCAGTGTCAAATTCGATGCTGTACTTTGTCTTACCTATCGCAAGTTTCCCCTTGCTACGGCTTGCCGCTATGCACAGGCACATCGATTGCCCTGGGTGGCGGATTGCCGCGATGTGATCGAACAGTACAGCAACTACGATTTTCTTCCTCGTGGCAAGCGACTGCCAAGTCTGCTGATGAAGTGGCTTCGACACCGCTATATTTCTCTCCGAAACCATTATCTCCACAAAGCTGATCGTGTAGTTTCGGTATCACCCTGGCACTGCAATCTGCTCGCAGAAGTTAATCCTCGTACAGAATTGATCTACAATGGATATGATCCCGAGCTTTTTTCTCGAGGATCGCTTCCTTGTGGCAAATTCATCCTCTCCTATACAGGACGATTGCTGACTCCGGAAATGCACGATCCTACCCTTTTGTTCGAAGCTTTGGCTTCTGAAGCTCTTCAGGAGGTGCGCAAAGAGAGACGAATAGAGCTGCACTGGTATGTGGACGAATACTCCCGCTCCATCCTGCAACCATTCATTCGGCAGTATGCTCTGAAGGATATGTGCCGCTTTTTCCCGATGGTTCCGGCTGTTCAGGTACCCGAAATTCTCCGCCATAGCAGTGTCCTGCTCCAACTGGGCAACACAGAGAAGCCCGGAGGCCCCCATGGTATAGTATCGACCAAGCTATTCGAGTCACTGGCCATGGAAAAACCCATCCTGATGGTAAGGAGCGATGAAGCTATCGTGGCAGATATTATATCGGAGGCCGAGGCAGGATTGGCTGCACAGACGACAGAAGAGGTAGCCACATTCCTGAGTGATCAATACACTCGCTGGAAGGCAGAAGGGGATACTTCTCTTCGGAACCCGAACAGGAATTTTATCTCCACTTTTTCGCGTGAAGAGGAAGCCAAACAATATGCTCGTCTACTGGAATCGATCGTCGCTAAC","7.90","4.11","47738","MKRVLIFADIFPPAFAPRAAYLTKYLPRFGWEPFVITEKMPTPASQSHGDVFGGFCSDIPVTAIDLSSASFLSQAIRSARLFGELFWEQKEERFYKEAAKAFPSVKFDAVLCLTYRKFPLATACRYAQAHRLPWVADCRDVIEQYSNYDFLPRGKRLPSLLMKWLRHRYISLRNHYLHKADRVVSVSPWHCNLLAEVNPRTELIYNGYDPELFSRGSLPCGKFILSYTGRLLTPEMHDPTLLFEALASEALQEVRKERRIELHWYVDEYSRSILQPFIRQYALKDMCRFFPMVPAVQVPEILRHSSVLLQLGNTEKPGGPHGIVSTKLFESLAMEKPILMVRSDEAIVADIISEAEAGLAAQTTEEVATFLSDQYTRWKAEGDTSLRNPNRNFISTFSREEEAKQYARLLESIVAN","946375 947868 [Bad Olap 1024 247 0]","TIGR ID: PG0884","conserved hypothetical protein; possible gycosyltransferase I family protein","Cytoplasm","This sequence corresponds to gi:34396966 in Genbank.Its nearest neighbor in the NR database is gi:48831833 from Magnetococcus sp. MC-1.","
noIPR
unintegrated
unintegrated
PTHR12526\"[165-309]TPTHR12526
PTHR12526:SF44\"[165-309]TPTHR12526:SF44
SSF53756\"[1-415]TSSF53756


","BeTs to 3 clades of COG0438COG name: Glycosyltransferases IFunctional Class: MThe phylogenetic pattern of COG0438 is AMTKYQVCEBRhUj--o---XNumber of proteins in this genome belonging to this COG is 9","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 13:57:58 MDT 2001","","Thu Jun 14 13:57:58 MDT 2001","Thu Jun 14 13:57:58 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:57:58 MDT 2001","Thu Jun 14 13:57:58 MDT 2001","","","Fri Mar 4 10:49:58 2005","Fri Mar 4 10:46:48 2005","Thu Mar 8 14:50:29 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 8 14:50:29 MST 2001","-37% similar to PDB:1E1D HYBRID CLUSTER PROTEIN FROM DESULFOVIBRIO VULGARIS (E_value = );-37% similar to PDB:1E2U LOW TEMPERATURE STUCTURE OF HYBRID CLUSTER PROTEIN FROM DESULFOVIBRIO VULGARIS TO 1.6A (E_value = );-37% similar to PDB:1E9V XENON BOUND IN HYDROPHOBIC CHANNEL OF HYBRID CLUSTER PROTEIN FROM DESULFOVIBRIO VULGARIS (E_value = );-37% similar to PDB:1GNT HYBRID CLUSTER PROTEIN FROM DESULFOVIBRIO VULGARIS. X-RAY STRUCTURE AT 1.25A RESOLUTION USING SYNCHROTRON RADIATION. (E_value = );-37% similar to PDB:1OA1 REDUCED HYBRID CLUSTER PROTEIN (HCP) FROM DESULFOVIBRIO VULGARIS HILDENBOROUGH STRUCTURE AT 1.55A RESOLUTION USING SYNCHROTRON RADIATION. (E_value = );","","","No significant hits to the Pfam 11.0 database","Mon Jun 18 09:48:51 MDT 2001","34540652","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Fri Mar 4 10:49:58 2005","","1","","","PG0884" "PG0793","947887","948984","1098","ATGAAGTACTGTGATTTTACGCCGTTGCCTCTCCCTTCGGAGCCTAATACGACAGTCATTGCCGGTCCTTGCAGTGCAGAAAGTGAGGAGCAGATAATGACTACTGCTCGTGCCCTCAGGGATGAAGCAGGCATTCGTATTTTTCGTGCCGGTCTGTGGAAACCTCGTACCTTGCCGGGGTGCTTCGAAGGAGTAGGAGAAACAGGGCTACCTTGGTTGGTGCGTGTACAGGATGAATTGGATATGCTTGCTACCACGGAAGTGGCTACTCGCGAACACGTAGAGCAAGCCATGCAAGCCGGTATCAGAATACTCTGGTTAGGTGCACGAACCACATCCAATCCCTTTGCTGTACAAGAAATTGCCGATACGATAGGCAAGGACGAATCGGTGATTGTCCTCGTCAAGAATCCGATCAGTCCCGATTTGGATCTGTGGACAGGAGCCCTAGAACGGCTTCGGCAGTCCGGAGTTCGACAGATCGGAGCCATCCATAGAGGATTCAGTACCTATGCGACCAAGACGTTTCGCAATCCTCCACATTGGCAGATTCCCTTCGATTTGAAAAGACGTTTTCCTTCGTTAACCATCCTTTGTGATCCGAGTCATATTACGGGACAGAGAGATCGGATCGAATCCGTCAGCCAGCAAGCCATGGAAATGAATTTCGACGGGCTAATTATCGAGTCGCATTGCTGCCCGGATAAGGCTCTAAGCGATGCAAGCCAGCAGATAACACCTACTGTACTTGCCCAAATCCTCCGGCGACTGCGTATCCCACGGCGCCAATCCGAAAAGCAAGACGAAGAGCTGATCTCTTGGCGCATGCAGATTGATCAGATAGATGAGAGTATAGTGGAATTGCTAGCTCGGCGGATGCAAGTGGCATACGAGATAGGTTTGTTCAAAAAAGAGCACAATCTGGCTGTGGTTCAGAATCTCCGCTACGAACAACTACAGCGCAACCGTGCCCGTACTGCAGCCCTCTTAGGTTTGGACGAAACATTTATATCGGAGCTGTTCAGCCGTATTCATGAGGAATCTGTCCGTCTGCAGACCCTTGCCCCCCAAAAGCCACACACCGACGACTGTATATCA","6.10","-4.37","41534","MKYCDFTPLPLPSEPNTTVIAGPCSAESEEQIMTTARALRDEAGIRIFRAGLWKPRTLPGCFEGVGETGLPWLVRVQDELDMLATTEVATREHVEQAMQAGIRILWLGARTTSNPFAVQEIADTIGKDESVIVLVKNPISPDLDLWTGALERLRQSGVRQIGAIHRGFSTYATKTFRNPPHWQIPFDLKRRFPSLTILCDPSHITGQRDRIESVSQQAMEMNFDGLIIESHCCPDKALSDASQQITPTVLAQILRRLRIPRRQSEKQDEELISWRMQIDQIDESIVELLARRMQVAYEIGLFKKEHNLAVVQNLRYEQLQRNRARTAALLGLDETFISELFSRIHEESVRLQTLAPQKPHTDDCIS","947887 948984","The gapped BLAST hits tend to correspond to residues 8-250 and residues 260-350.TIGR ID: PG0885","phospho-2-dehydro-3-deoxyheptonate aldolase (chorismate mutase) (phospho-2-keto-3-deoxyheptonate aldolase) (3-deoxy-D-arabino-heptulosonate-7-phosphate synthase)","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 18-246 are 34% similar to pirB75161 phospho-2-dehydro-3-deoxyheptonate aldolase of Pyrococcus abyssi (strain Orsay), residues 18-245 are 33% similar to gbAAD35429.1AE001715_5 chorismate mutase, putative of Thermotoga maritima, residues 18-245 are 34% similar to gbAAG53674.1AF318277_2 phospho-2-dehydro-3-deoxyheptonate aldolase of Enterococcus faecalis.This sequence is similar to BT3934.","
InterPro
IPR002701
Domain
Chorismate mutase
PF01817\"[275-355]TCM_2
PS51168\"[265-356]TCHORISMATE_MUT_2
SSF48600\"[269-352]TChorismate_mut
InterPro
IPR006218
Domain
DAHP synthetase I/KDSA
PF00793\"[6-263]TDAHP_synth_1
InterPro
IPR013785
Domain
Aldolase-type TIM barrel
G3DSA:3.20.20.70\"[2-269]TAldolase_TIM
noIPR
unintegrated
unintegrated
PTHR21057\"[16-281]TPTHR21057
PTHR21057:SF1\"[16-281]TPTHR21057:SF1
SSF51569\"[1-274]TSSF51569


","BeTs to 6 clades of COG0722COG name: DAHP synthase/3-Deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthaseFunctional Class: E,MThe phylogenetic pattern of COG0722 is ----YqvcEb-Huj----INxNumber of proteins in this genome belonging to this COG is 2","***** PF01817 (Chorismate mutase) with a combined E-value of 2.7e-08. PF01817 274-303","Residues 20-245 are 34% similar to a (ALDOLASE SYNTHETASE SYNTHASE) protein domain (PD005860) which is seen in AROG_BACSU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Sat Jan 3 10:19:02 2004","Fri Mar 23 13:20:45 MST 2001","Wed Jul 23 19:51:00 2008","Fri Mar 23 13:20:45 MST 2001","Fri Mar 23 13:20:45 MST 2001","Fri Mar 23 13:20:45 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Jul 23 19:51:00 2008","-52% similar to PDB:1ZCO Crystal structure of pyrococcus furiosus 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase (E_value = 2.4E_29);-51% similar to PDB:1VS1 Crystal structure of 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase) from Aeropyrum pernix in complex with Mn2+ and PEP (E_value = 2.5E_26);-51% similar to PDB:1RZM Crystal structure of 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHPS) from Thermotoga maritima complexed with Cd2+, PEP and E4P (E_value = 5.6E_26);-51% similar to PDB:1VR6 Crystal structure of Phospho-2-dehydro-3-deoxyheptonate aldolase (DAHP synthase) (TM0343) from Thermotoga Maritima at 1.92 A resolution (E_value = 5.6E_26);","","","Residues 6 to 263 (E-value = 1.9e-16) place PG0793 in the DAHP_synth_1 family which is described as DAHP synthetase I family (PF00793)Residues 264 to 353 (E-value = 1.6e-12) place PG0793 in the Chorismate_mut family which is described as Chorismate mutase (PF01817)","Sat Jan 3 10:19:02 2004","34540653","","","","","","1","","","PG0885" "PG0794","948984","949745","762","ATGAACACTCACCACCATATCGTTATCAGTATAGGCAGCAACTACGCTGCAGAGACCAATATACCGGCGGCTATGCGCCTGCTTCGGGACTCATATCCGACGATCCGTTTCTCCAAGCCCATCGAGAACGCTCCCATTGACTTCCCTTACCCTTCAGGTTTGTTTACCAATCTGACAGCCCATTTCTATTCATCGGAGAACCGGGAAGAAGTCGGACGGAAACTGAAGGGGATAGAATTGCAATTAGGCAGGACATATACCAAGCCTTTCGATGGCCGTGTAGCCATTGATCTTGACCTGATCGTCTGGAACAATACAATACTGAAGAATGTTGACTATTCAAGGCCTTATATTCAATCCGGCCTCCAAGAACTGCGTATCAATATCCAAACACAACTCAATATGACGAAAGAATCCAGATCGGAAACATTTTTCCACAACAAACCGAACAATTGGAACTGCGCACAAGCTGTTCAAAAAGGATTTCAAGATTTGACCGGTATGACTGACGAAGCGATCGAAGAAGAATACCGCTCCAAGGGTGGCGGAAGAGCCGAAGGCGGACTCTGCGGTGCACTTTATTCAGCCAATAGAATCCTTGAATCTAAAGGGCTGCAACCGGTCAGTCAGGAGTTTCAGGCCCATGCTGGCGGTATCACCTGCCGTGAGCTAAAGGGAGAACTGAAATTTCCCTGTAACAACTGTGTCCGCTTAGCCGAAGAGCTTGTCGAGCAAAGACTATCCGAATCGCAGACAATTGAC","6.50","-1.78","28631","MNTHHHIVISIGSNYAAETNIPAAMRLLRDSYPTIRFSKPIENAPIDFPYPSGLFTNLTAHFYSSENREEVGRKLKGIELQLGRTYTKPFDGRVAIDLDLIVWNNTILKNVDYSRPYIQSGLQELRINIQTQLNMTKESRSETFFHNKPNNWNCAQAVQKGFQDLTGMTDEAIEEEYRSKGGGRAEGGLCGALYSANRILESKGLQPVSQEFQAHAGGITCRELKGELKFPCNNCVRLAEELVEQRLSESQTID","948984 949745","TIGR ID: PG0886","hypothetical protein","Cytoplasm","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
G3DSA:3.30.70.560\"[5-110]TG3DSA:3.30.70.560
SSF55083\"[5-109]TSSF55083


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Mar 8 14:46:00 MST 2001","","Thu Mar 8 14:46:00 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 8 14:46:00 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Mar 8 14:46:00 MST 2001","34540654","","","","","","1","","","PG0886" "PG0795","950242","951435","1194","ATGATCAAATTAGCACCTGCAGCCTTGAAGGCAGATCTCCAAGTACGCCAAGAGCGTGTACGTATAGCAATGGAAGAAGAAGGGTATGATGCTTTGCTGGTAACAAGCAATGTCAATTTGCTTTATCTCTTCGGATCCATATATGGAGGGGCAGCCTATTTGCCGGCAGAGGGTGAACCTATCTTTTTCGTTCGTCGTCCACAAGTAATCGAGGAGGGAAATGTTTGTCCCATACGTAAACTCGAAGATATTCCTGCATTAATTCAGAGTAGAGGAGGCGTATTGCCTCGCCGTATCATGCTTGAGAATGACGAATCATCCTATAGCGACATTAAGCGCCAACACAGTATCTTTCCCAATGCTGAGTACGGCAATGCTACGGCTCTTTTGCGTCGCTTACGAATGATCAAGACACCGGGTGAAATAGAACTTTTTCGTCGGACTGCTGCCATCCACGGGGAAGTCTATGCGTGTATTCCATCCGTTTTCAGACCGGGCATGACAGATAGAGAGTTTCAGGTCGAGATCGAACATTTGATGCGTAACTATGGTTCAGAGGGTATATTTAGAACATTCGGATCTGCGATGGAAATTCACATGGGCAATGTGATCGTAGGGGATAATGCCGAGTCGCCGTCTCCTTATGACTTCGCCATGGGAGGTGGCGGTACGGATGCCTTGCCTTTGGGAGCAGATGGATCGCCCATGAAAGAGGGTATGTGCGTTATGGTGGATATGGCGGGCAACTATTCGGCATATATATCTGACATGACTCGCAGCTATGCCATCGGAAAAGTGCCGGACGAAGCCAGACGATTGCATGACCTCAGTCGGGAAATTCAGGCGAAGGTTATGGAGACTGCCGAACCCGGCATGTCGTGTGCCGATCTTTATAAACGCTCTGTAGAGATGGCCGAGGAAGCAGGGGCTGCCGATAAATTCATGGGGACGAAGCAGCAAGCTAAATTTGTGGGACATGGCATAGGACTCCAGATTAATGAAATGCCTGTACTAATGGCTCGCAGTAAAGAGATACTGACGCCCGGGATGGTGATAGCCTTTGAACCCAAATTTGTTCTTCCCGGTATTGGGGCCGTAGGTAATGAGAATAGTTTTCTGGTTACGGAATCCGGTGTAGAGAAACTAACGGTCTGTTCCGAAGAGCTGATAGATCTATTGGCTGTAGCGAAACAA","5.00","-11.75","43646","MIKLAPAALKADLQVRQERVRIAMEEEGYDALLVTSNVNLLYLFGSIYGGAAYLPAEGEPIFFVRRPQVIEEGNVCPIRKLEDIPALIQSRGGVLPRRIMLENDESSYSDIKRQHSIFPNAEYGNATALLRRLRMIKTPGEIELFRRTAAIHGEVYACIPSVFRPGMTDREFQVEIEHLMRNYGSEGIFRTFGSAMEIHMGNVIVGDNAESPSPYDFAMGGGGTDALPLGADGSPMKEGMCVMVDMAGNYSAYISDMTRSYAIGKVPDEARRLHDLSREIQAKVMETAEPGMSCADLYKRSVEMAEEAGAADKFMGTKQQAKFVGHGIGLQINEMPVLMARSKEILTPGMVIAFEPKFVLPGIGAVGNENSFLVTESGVEKLTVCSEELIDLLAVAKQ","probable XAA-PRO aminopeptidase","If this is an XAA_PRO aminopeptidase, its activityis to remove XAA-Pro dipeptides from N-terminalends. Aminopeptidase PII releases any N-terminalamino acid, including proline, that is linked withproline, even from a dipeptide or tripeptide. Itscofactor is zinc but the inactive apoenzyme can beactivated by the addition of manganese as well aszinc. Aminopeptidase PII is a homotetramer belongingto peptidase family M24B.TIGR ID: PG0889","probable Xaa-Pro dipeptidase","Cytoplasm","This sequence is similar to CT574 and BT1974.Numerous moderately significant hits in gapped BLAST to Xaa-Pro dipeptidase; e.g. residues 13-390 are 25% similar to AF060010 of Pyrococcus furiosus, residues 15-392 are 25% similar to Z99116 of Bacillus subtilis, residues 16-390 are 27% similar to AP001516 of Bacillus halodurans.","
InterPro
IPR000587
Domain
Creatinase
PF01321\"[16-65]TCreatinase_N
InterPro
IPR000994
Domain
Peptidase M24, catalytic core
G3DSA:3.90.230.10\"[133-398]TPeptidase_M24_cat_core
PTHR10804\"[231-383]TPeptidase_M24_cat_core
PF00557\"[143-384]TPeptidase_M24
noIPR
unintegrated
unintegrated
PTHR10804:SF16\"[231-383]TPTHR10804:SF16
SSF53092\"[10-135]TSSF53092
SSF55920\"[135-392]TSSF55920


","BeTs to 13 clades of COG0006COG name: Xaa-Pro aminopeptidaseFunctional Class: EThe phylogenetic pattern of COG0006 is amtKYqvcEBRhujgpolinxNumber of proteins in this genome belonging to this COG is 2","***** IPB001131 (Proline dipeptidase) with a combined E-value of 1.7e-09. IPB001131A 217-260 IPB001131B 322-334 IPB001131C 346-360 IPB001131D 365-378***** IPB002467 (Methionine aminopeptidase, subfamily 1) with a combined E-value of 2.1e-07. IPB002467C 236-264 IPB002467D 304-341 IPB002467E 346-388","Residues 166-334 are 28% similar to a (AMINOPEPTIDASE HYDROLASE PROTEIN METHIONINE PEPTIDASE) protein domain (PD000555) which is seen in P81535_PYRFU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","Wed Mar 14 17:28:10 MST 2001","Tue Dec 9 16:54:38 2003","Fri Jun 8 15:57:15 MDT 2001","Tue Dec 9 16:54:38 2003","Wed Mar 14 17:28:10 MST 2001","Wed Mar 14 17:28:10 MST 2001","Wed Mar 14 17:28:10 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 136-374 show 23% similarity to PG1672, methionine aminopeptidase.","Wed Mar 14 17:28:10 MST 2001","Wed Mar 14 17:28:10 MST 2001","-47% similar to PDB:1PV9 Prolidase from Pyrococcus furiosus (E_value = 2.0E_32);-47% similar to PDB:1WY2 Crystal Structure of the Prolidase from Pyrococcus horikoshii OT3 (E_value = 8.3E_31);-41% similar to PDB:1WN1 Crystal Structure of Dipeptiase from Pyrococcus Horikoshii OT3 (E_value = 4.2E_22);-40% similar to PDB:2BWS HIS243ALA ESCHERICHIA COLI AMINOPEPTIDASE P (E_value = 9.3E_14);-40% similar to PDB:1A16 AMINOPEPTIDASE P FROM E. COLI WITH THE INHIBITOR PRO-LEU (E_value = 1.2E_13);","","","Residues 321 to 383 (E-value = 7.2e-06) place PG0795 in the Peptidase_M24 family which is described as metallopeptidase family M24 (PF00557)","Wed Mar 14 17:28:10 MST 2001","34540656","","","","","","1","","","PG0889" "PG0796","951474","953162","1689","ATGAAACGAATCAAACAAACTCTTAGTACGATTCTTCTTTTTATTATCGTACTCTCTCCGGCTCTATATGCCGGTCAGCCACGGGAGGTCAAGCCAGTTCGGAACGTGATTCTGATGATTCCCGATGGTACCTCTCTTTCGGCTGTTTCTCTCGCTCGCTGGTATCAGCGATACCTGAATCCCGACCGCCGGCATTTGGCTATAGATCCATATATATGTGGTACTGTTCTGACCTATTCGTCCGATGCCCCGATTGGAGACTCTGCACCTACTACATCGTGCTATATGACAGGTATGCCATCCAATACGGGTTTTGTGTCGACTTATCCTGTCAGTTCGGGTGATGCAGATCTGATTCCGGTGGATAAGGCTCGTGCTTATTCTCCTTTGGCTACTTTTCTGGAGGCGGCTAAAATAATGAAGGGAAAGAAAACGGGTTTGGTCGTGACTTGTCACTTCCCTCATGCCACACCGGCCGATTGCTCGGCACACTCTTATTCTCGTAAGAAATACGATTGGATTGCAGCGCAGATGGTACACCAAAATCTGGATGTTGTACTCGGAGGCGGAACACACTACCTCCATCCGGAACTGCAATCCGTACTCAATAGCCGTGGCTATGGGCTCTTTCTGGATGACCTGAATGGAATGCGCACTTATGCGGGAGATAGGATGTGGGCTTTGTTCGGCAAACGGGAAATGCCCTATGATTTAGATCGTGATACTACACAAATCCCTTCACTGGAGGAGATGACTCGCTTGGCTATAGAGAAGCTGAATCGTTCTGAGGAAGGCTTTTTCCTTATGGTCGAGGGTAGTAAAGTGGATTGGGCTGCACATGCCAACGATCCTGTGGGGATTGCTACCGAATATCTTGCTTTCGATCGTGCTTGTGCCGTGGCATTCGACTTTGCCCGTCGTGACGGACAAACGGCTGTCATCATCGTGCCGGATCATGGCAATAGCGGTGTAAGCATAGGCAAACAAAGTGTGAAAGACTATGATAAGCGTTCTGCAAAAGACCTTTTCGATCAACTCTGTCGCTTCCGCCTGACAGCAGACGGACTTGCAGGGCGTTTGGCTGATACTCCCGCCGACAAGGTCCAGGGTTTGGTAAGCAATATCTGCGGATTCGAATTGGACGCCAAAGAGTTGGAAGCTCTTTATAATTGTCCGGATTATAATCATAGTCCTATCCCCAAAGAGCAGCGCAGGCAGACGGAAGAATCCCTCTACAGCGGTTCGCTCAGTACCTTCATCGCATCGCTTTATACGAAGCACACTTCGATCGGTTTTACGACGCACGGACATACTGCCGAAGAAGTATTGTTGGCGGCCTATCACCCCCAAGATACACGCCCGATGGGAATGGTCATAAACTATGAACTGAATGACTATCTCTGCCGTCTCTTCGAATTAGGAAGCCAATTGCCCGTCCTTACCGACAAGATATTTGCTCCCCATACGGAAGTATTCCAAGGCATGAGCTACAGTATCAAAGACGGAAAGAAGGAAGGAGAACTGCCTGTTCTTGAAGTGAAAAAAGGTAGCCATCGCTTACTGGCGAGTCCTTTCTCCAATACGGTTATCTTCAATAAGAAAGCGATTGATCTGTCTTCCGTAGTAGTCTATGTAGATAAGACTAAGACTTTCTATTTGCCTCGTGAACTGCGTTCTTTATTCGGAGAA","6.90","-0.54","62586","MKRIKQTLSTILLFIIVLSPALYAGQPREVKPVRNVILMIPDGTSLSAVSLARWYQRYLNPDRRHLAIDPYICGTVLTYSSDAPIGDSAPTTSCYMTGMPSNTGFVSTYPVSSGDADLIPVDKARAYSPLATFLEAAKIMKGKKTGLVVTCHFPHATPADCSAHSYSRKKYDWIAAQMVHQNLDVVLGGGTHYLHPELQSVLNSRGYGLFLDDLNGMRTYAGDRMWALFGKREMPYDLDRDTTQIPSLEEMTRLAIEKLNRSEEGFFLMVEGSKVDWAAHANDPVGIATEYLAFDRACAVAFDFARRDGQTAVIIVPDHGNSGVSIGKQSVKDYDKRSAKDLFDQLCRFRLTADGLAGRLADTPADKVQGLVSNICGFELDAKELEALYNCPDYNHSPIPKEQRRQTEESLYSGSLSTFIASLYTKHTSIGFTTHGHTAEEVLLAAYHPQDTRPMGMVINYELNDYLCRLFELGSQLPVLTDKIFAPHTEVFQGMSYSIKDGKKEGELPVLEVKKGSHRLLASPFSNTVIFNKKAIDLSSVVVYVDKTKTFYLPRELRSLFGE","951474 953162","TIGR ID: PG0890","alkaline phosphatase","Periplasm, Cytoplasm","Residues 19-561 have 35% similarity to U79570, B. licheniformis alkaline phosphatase I.Residues 10-473 have 30% similarity to AP001510, B. halodurans alkaline phosphatase.Residues 4-449 have 29% similarity to AJ248286, P. abyssi alkaline phosphatase.","
InterPro
IPR001952
Family
Alkaline phosphatase
PR00113\"[33-53]T\"[138-158]T\"[182-192]T\"[247-276]TALKPHPHTASE
G3DSA:3.40.720.10\"[31-484]TAlk_phosphtse
PF00245\"[27-344]TAlk_phosphatase
SM00098\"[34-474]TalkPPc
noIPR
unintegrated
unintegrated
PTHR11596\"[112-381]T\"[423-562]TPTHR11596
PTHR11596:SF5\"[112-381]T\"[423-562]TPTHR11596:SF5
SSF53649\"[1-474]TSSF53649


","BeTs to 4 clades of COG1785COG name: Alkaline phosphataseFunctional Class: PThe phylogenetic pattern of COG1785 is ----y-v-eB-----------Number of proteins in this genome belonging to this COG is 1","***** IPB001952 (Alkaline phosphatase family) with a combined E-value of 2e-51. IPB001952A 33-58 IPB001952B 67-109 IPB001952C 128-177 IPB001952D 184-196 IPB001952E 245-268 IPB001952F 269-310 IPB001952G 424-473","Residues 33-463 are 32% similar to a (PHOSPHATASE ALKALINE PRECURSOR HYDROLASE SIGNAL ZINC) protein domain (PD001868) which is seen in PPB3_BACSU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri May 4 12:28:27 MDT 2001","Thu Mar 8 14:43:36 MST 2001","Thu Mar 8 14:43:36 MST 2001","Thu Mar 8 14:43:36 MST 2001","Thu Mar 8 14:43:36 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 8 14:43:36 MST 2001","-46% similar to PDB:2IUC STRUCTURE OF ALKALINE PHOSPHATASE FROM THE ANTARCTIC BACTERIUM TAB5 (E_value = 1.2E_28);-43% similar to PDB:1K7H CRYSTAL STRUCTURE OF SHRIMP ALKALINE PHOSPHATASE (E_value = 1.8E_24);-43% similar to PDB:1SHN Crystal structure of shrimp alkaline phosphatase with phosphate bound (E_value = 1.8E_24);-43% similar to PDB:1SHQ Crystal structure of shrimp alkaline phosphatase with magnesium in M3 (E_value = 1.8E_24);-43% similar to PDB:1Y7A Structure of D153H/K328W E. coli alkaline phosphatase in presence of cobalt at 1.77 A resolution (E_value = 1.5E_23);","","","Residues 27 to 344 (E-value = 3.1e-25) place PG0796 in the Alk_phosphatase family which is described as Alkaline phosphatase (PF00245)","Thu Mar 8 14:43:36 MST 2001","34540657","","","","","","1","","","PG0890" "PG0797","955945","954296","1650","ATGGAAAAGAAAATGTTTTGCTATCAATGCCAGGAAACAGCCGGCAATAAGGGATGTATCCTCAAAGGGGTATGCGGTAAGGACTTTAGTACAGCTAATCTGATGGATTTGCTCGTCTTTAACCTCAAAGGTATTGCCATCATAATGACTTCTATGAGGCGTGCCGGAGTGAAAGCCGATTACCGAAAGGCTGACAAGGCGATCATGGAATCTCTATTTGCCACAATTACCAATGCCAACTTCGACTACTCTTCCATAGCCAAACGTGTAGAGAAAACGTTCGCACTCAAAGCGGAATTGTACAGTTTGGCTTTTACTCAAGGCATAGAGCTTCCCGAAAATGAAGCAGTGACGATGCAGGGAAAGCCGGAAGAATATGATCGGTTGGCTCTCAGTGTAGGTATTCTAAGAGAGACAGACGAAGATGTACGTTCTCTCAAAGAGCTGACGATCTATGGACTCAAAGGATTGGCAGCCTATGCGGAGCATGCGGATCGACTCGGCTACGTGGATGAAGAGATCAATGCCTTCACCGAACGTGCGCTGCACGATGTGACGATGGGATTGCTTTCGGCAGAAGAGCTGACGGCTCTTGTACTGGAAACCGGTTCTTTCGGAGTGAAGGTAATGGCTCTGCTCGACAAAGCTAATACCGAGACTTATGGCAATCCGGAAATCACGGAAGTAAATATAGGTGTCGGTTCGCGCCCGGGTATCCTTATCAGCGGTCATGATCTGAAAGATATGGAGATGCTGCTCGAGCAAACTGAAGGAACAGGAATAGATGTGTACACACACGGTGAAATGCTACCGGCCAACTATTATCCCAAATTCAAAAAATACAACCACTTCTTCGGCAATTACGGCAATGCATGGTGGAAACAGCGTGAGGAGTTCGAAACCTTCAACGGCCCTATCCTTTTCACCACAAACTGTATCGTCCCCCCTAAGGCCAATGCTTCCTACAAGGATCGGGTATTTACCACCAACGCTACGGGCTATCCGGGATTCAAGTACATCGAGAGCGATCAGCACGGGCGCAAGGACTTCAGCGAAATCATTGCCTTGGCCAAGACGTGCCAACCTCCCACAGAGATTGAGAGCGGCACTATCATAGGAGGCTTTGCACACCATCAGGTATTGAGCATCGCCGACAAAGTAGTGGAGGCTGTCAGCAGTGGAGCGATCCGCAAGTTTGTAGTGATGAGCGGTTGTGACGGCCGGCAGAGTGGGCGCAATTATTACACGGAGTTTGCCGAAGCTCTTCCTTCCGATACGGTTATCCTTACATCGGGATGCGCCAAGTTCCGATACAACAAATTGCAGCTTGGCGACATTGGGGGCATCCCTCGCGTTCTCGATGCCGGACAGTGTAATGACAGTTATTCGCTGGCGGTAATTGCCCTGAAGCTGAAAGAAGTAATGGGATTGGATGACATCAACAAACTACCGATCGTCTACAACATTGCATGGTACGAACAGAAAGCTGTCATCGTCCTGCTCGCTCTACTCAGCCTCGGTGTCAAGAACATCCATGTAGGCCCTACCCTACCTGCATTCCTATCACCGAATGTAGCGAAAGTGCTGATCGAAAACTTCGGTATAGCAGGTATCGGTACGGTCGAAGAAGATATTCGGACGCTGATCGCA","5.30","-11.21","60520","MEKKMFCYQCQETAGNKGCILKGVCGKDFSTANLMDLLVFNLKGIAIIMTSMRRAGVKADYRKADKAIMESLFATITNANFDYSSIAKRVEKTFALKAELYSLAFTQGIELPENEAVTMQGKPEEYDRLALSVGILRETDEDVRSLKELTIYGLKGLAAYAEHADRLGYVDEEINAFTERALHDVTMGLLSAEELTALVLETGSFGVKVMALLDKANTETYGNPEITEVNIGVGSRPGILISGHDLKDMEMLLEQTEGTGIDVYTHGEMLPANYYPKFKKYNHFFGNYGNAWWKQREEFETFNGPILFTTNCIVPPKANASYKDRVFTTNATGYPGFKYIESDQHGRKDFSEIIALAKTCQPPTEIESGTIIGGFAHHQVLSIADKVVEAVSSGAIRKFVVMSGCDGRQSGRNYYTEFAEALPSDTVILTSGCAKFRYNKLQLGDIGGIPRVLDAGQCNDSYSLAVIALKLKEVMGLDDINKLPIVYNIAWYEQKAVIVLLALLSLGVKNIHVGPTLPAFLSPNVAKVLIENFGIAGIGTVEEDIRTLIA","955945 954296","TIGR ID: PG0893","prismane protein; hybrid cluster protein","Cytoplasm","Residues 1-546 have 65% similarity to Z11975, D. desulfuricans prismane protein.Residues 5-550 have 63% similarity to Z11707, D. vulgaris prismane protein.Residues 5-549 have 59% similarity to U67522, M. jannaschii prismane-containing protein.This sequence is similar to BT0687.","
InterPro
IPR004137
Family
Prismane
PF03063\"[5-549]TPrismane
InterPro
IPR010048
Family
Hybrid cluster protein
PIRSF000076\"[5-550]THCP
TIGR01703\"[5-549]Thybrid_clust
InterPro
IPR011254
Family
Prismane-like
SSF56821\"[5-549]TPrismane_like
noIPR
unintegrated
unintegrated
G3DSA:1.20.1270.20\"[2-143]T\"[144-227]TG3DSA:1.20.1270.20
G3DSA:3.40.50.2030\"[229-381]T\"[384-550]TG3DSA:3.40.50.2030


","BeTs to 4 clades of COG1151COG name: 6Fe-6S prismane cluster-containing proteinFunctional Class: RThe phylogenetic pattern of COG1151 is -mt---v-e------------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 132-546 are 53% similar to a (PRISMANE PROTEIN ELECTRON TRANSPORT) protein domain (PD006460) which is seen in PRIS_DESDE.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Mar 8 14:07:41 MST 2001","Wed Dec 3 08:45:42 2003","Thu Mar 8 14:07:41 MST 2001","","Thu Mar 8 14:07:41 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 8 14:07:41 MST 2001","-77% similar to PDB:1GN9 HYBRID CLUSTER PROTEIN FROM DESULFOVIBRIO DESULFURICANS ATCC 27774 X-RAY STRUCTURE AT 2.6A RESOLUTION USING SYNCHROTRON RADIATION AT A WAVELENGTH OF 1.722A (E_value = );-77% similar to PDB:1GNL HYBRID CLUSTER PROTEIN FROM DESULFOVIBRIO DESULFURICANS X-RAY STRUCTURE AT 1.25A RESOLUTION USING SYNCHROTRON RADIATION AT A WAVELENGTH OF 0.933A (E_value = );-77% similar to PDB:1OA0 REDUCED HYBRID CLUSTER PROTEIN FROM DESULFOVIBRIO DESULFURICANS X-RAY STRUCTURE AT 1.25A RESOLUTION (E_value = );-77% similar to PDB:1UPX THE CRYSTAL STRUCTURE OF THE HYBRID CLUSTER PROTEIN FROM DESULFOVIBRIO DESULFURICANS CONTAINING MOLECULES IN THE OXIDIZED AND REDUCED STATES. (E_value = );-74% similar to PDB:1E2U LOW TEMPERATURE STUCTURE OF HYBRID CLUSTER PROTEIN FROM DESULFOVIBRIO VULGARIS TO 1.6A (E_value = );","","","Residues 5 to 549 (E-value = 1.5e-258) place PG0797 in the Prismane family which is described as Prismane/CO dehydrogenase family (PF03063)","Thu Mar 8 14:07:41 MST 2001","161579530","","","","","","1","","","PG0893" "PG0798","956853","956173","681","ATGACTATCAAGCAGCTGCACGAATCCGATCGCCCCCGTGAGAAAATGATCCGACTCGGTGCTCGCTGCCTGACCGATGCCGAACTGCTGGCCATCCTCATCGGATCGGGTAATGACCGGCAAACAGCCATCCAACTGGCTCAAGAGATTCTGGCCAAGATGGATAACAGCCTGCCGCGTCTGGCCAAATGCGACATACAAGAGCTGACCGGTAGCTTCCGAGGTATGGGACCGGCAAAAGCAGTCACCGTGATGGCAGCAATGGAACTGTCCCGCCGTATCCCTTCGCAAGAGATGCCCCGCAGAGAATCCATTACCGATAGTCGAATGGCCTATCGAACTATAAGCCCATTTCTCACAGACCTGCCGCAGGAAGAAATGTGGGTGTTACTCCTCAACCAAAGCGGAAAGATAATCAGCATGGAGAACCTTAGCCGAGGAGGTGTATCGGAGACTTCGGCCGATGTCCGTCTGATCATGCACAAAGCCGTCTCTCATCTTGCCTCGGCAATCATTCTGGCACACAATCATCCTTCAGGAACGGTACGCCCAAGTGAACAGGATATTCAGCTTACTCAAAGGGTGCAAAAGGCTGCCACATTGCTCGGATTTCGACTGAACGACCATCTGATCATCGGTGACGATGGGGCATATTTCAGTTTCGCTGACGAAGGCCTTCTC","7.10","0.35","25119","MTIKQLHESDRPREKMIRLGARCLTDAELLAILIGSGNDRQTAIQLAQEILAKMDNSLPRLAKCDIQELTGSFRGMGPAKAVTVMAAMELSRRIPSQEMPRRESITDSRMAYRTISPFLTDLPQEEMWVLLLNQSGKIISMENLSRGGVSETSADVRLIMHKAVSHLASAIILAHNHPSGTVRPSEQDIQLTQRVQKAATLLGFRLNDHLIIGDDGAYFSFADEGLL","956958 956173","TIGR ID: PG0894","DNA repair protein radC","Cytoplasm","Residues 3-227 have 38% similarity to AE000747, A. aeolicus DNA repair protein RadC.Residues 1-227 have 36% similarity to AE002454, N. meningitidis DNA repair protein RadC.Residues 1-227 have 36% similarity to AE004944, P. aeruginosa DNA repair protein RadC. ","
InterPro
IPR001405
Family
DNA repair protein RadC
PD007415\"[127-188]TRadC
PF04002\"[102-227]TRadC
TIGR00608\"[11-227]Tradc
PS01302\"[175-180]?RADC
noIPR
unintegrated
unintegrated
SSF102712\"[102-222]TSSF102712


","BeTs to 5 clades of COG2003COG name: DNA repair proteins, RadC familyFunctional Class: LThe phylogenetic pattern of COG2003 is -----qvcEb-h---------Number of proteins in this genome belonging to this COG is 1","***** IPB001405 (DNA repair protein radC family) with a combined E-value of 1.7e-19. IPB001405A 145-181 IPB001405B 182-226","Residues 3-84 are 39% similar to a (DNA REPAIR PROTEIN RADC) protein domain (PD013117) which is seen in O67541_AQUAE.Residues 104-227 are 39% similar to a (PROTEIN DNA REPAIR RADC) protein domain (PD007415) which is seen in YEES_ECOLI.","","Thu Jun 14 13:58:42 MDT 2001","","Thu Jun 14 13:58:42 MDT 2001","Thu Jun 14 13:58:42 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:58:42 MDT 2001","Thu Jun 14 13:58:42 MDT 2001","","","Thu Mar 8 13:50:34 MST 2001","Mon Jun 18 09:54:54 MDT 2001","Thu Mar 8 13:50:34 MST 2001","Mon Jun 18 09:52:13 MDT 2001","Mon Jun 18 09:52:13 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 8 13:50:34 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 102 to 227 (E-value = 9.6e-40) place PG0798 in the RadC family which is described as RadC, DNA repair protein (PF04002)","Mon Jun 18 09:52:13 MDT 2001","34540659","","","","","","1","","","PG0894" "PG0799","957391","960441","3051","GTGTTTGGCGAAAACAAAGAAGACGGCCATGCTACCTTTATGCCCTATGCTACAACAGCATTGTTGCAGGCTGATGAGCGGTATCAGAAACCTTGGCTTACTCCTTCGCAGGCAGAATTTTTATCTCTGAACGGCTTGTGGTATTTTCGCTATTTTCCCGATGCCCGTACTGCCCGTACCGATTTTGTCGAAGATCTGTTCGATGTGTCTGCATGGGATACCATCACAGTACCATCGTGCTGGCAGATGAAAGGTTGGGATACACCTTTATATATCAATGTAAACCACATCTTTGAGGACAATCCTCCATTTATTCGCATTCAGAAGACTTATACCTCGGCAGTGGATCCCAATCCGACAGGCTCTTATCGGCGTGACTTTATCCTTCCGACAGGCTGGGAAAAGAAACGCGTTTATCTGCATTTCGATGGTCTCTATAGTGGGGCTTATGTATGGATAAACGGGCGTTATATCGGCTACACTCAAGGGGGCAATAACGATGCCGAGTTCGATATCAGTGCGGCAGTTCGTGCGGGACAGAACAATGTGAGCATACAAGTAGTCCGCTGGACGGATGCTTCTTATTTGGAGGGACAGGATATGTTCCATATGAGCGGATTGCATCGCGATGTCTATCTGTACGCCACGCCTCGTACTTCCATTCGGGATCATTACATAACGAGCAAGTTGCATCCCGAATCCGACTATACCACAGGGGAAATATCCGTAGCCGTCGAGATGGACAACAGAGACGGTTCGGCTGCACGTAAGACTGTCGGAATACGTCTCTTGGATCCCCAAGGGAAAGTGCTCTGGGAGGAACGGAAGCAAACCCGACTGTCTGTGGGAGAACAGAAACAAAGCCTTCATTTTCGGAAAGCCGATCTTCGCAATCTATCCCTGTGGACAGCCGAGACACCTACTCTTTATACTCTTATTATCACCCAATGGGATGATAAGGAGCGCGAAGAATTGGCTTTTGCCACCAAGTATGGATTCCGTCAGCCGGAAATTCGCGATCAATCGGTGTATCTGAACGGTCGTAAAGTACTGTTCAAAGGAGTCAATACGCAGGATACGCATCCGCTTCATGGCCGCAGCATCGACTTGCCGACAATGGTGAAGGACATAACGATGATGAAGCAGGCCAACGTCAATACTCTTCGAACGAGTCACTATCCACGACAGCCCAAGATGTATGCCCTTTGTGATTACTACGGTCTCTATGTCATGGACGAAGCCGATTTGGAATGTCATAAGAATTGGGATGACCATGGAGAGAAGGGTGGTATCACCAATGCCGAATCATGGCGGGCGCAATATGTGGATCGCACTGTCCGTATGGTCTGTCGCGATCGCAATCATCCCTCCGTTTTGTTTTGGTCGCTCGGCAATGAATCGGGTGGGGGAGAAAACTTCCGACATACCTATGCGGCGGTTCGTGCACTCGATTCGCGCATCATTCACTACGAGGGTGCTACCCGTGGCGGAACGGAATATACCGACCTGCATTCCGTTATGTATCCCTCCCTTGCTCAGGTACAGGCCGGATCCAATGGCCGGGAGACGGACGGAAAGCCCTATTTCATGTGCGAATATGCTCATGCCATGGGCAACGGTGTCGGCAATTTGCAGGACTATTGGGATATAATGGAGCAGAGCAGTGCCGGTATAGGCGGCTGTATATGGGACTGGGTGGATCAGGCCATCTACGATCCTTCCGAAATCAAACGTGGACTCTATCGCCTGCATACCGGATACGACTATCCGGGACCTCATCAGGGAAATTTCGTGAACAACGGACTTGTGACGGCTGACCGGTCATGGACTCCGAAGCTGTACGAAGTGAAGAAAGTGTATCAGTACGTGAAATTCGATGCATACGACAGTAAAAGCAAACTGCTCACTCTGCACAATGCCTACTCCTTTACGGATTTGAATCGATTCGGTCTTCGTTTTAAGCTCCTCTCCGACGGCTGTGTGATCGAAAGCGGAGAAGTGGATCTGCCCAAATTGCCGGCAGGAGAAAAAGCTACATTGAGGATACCCGTCGCCGATATTCCAATGTATTCGACTCGCGACTTCCATATCGATTTCGAACTCTTCCTTCGTGAAGCCACCACTTGGTCCGATAAGGGATACACGGTAGCATCCGAACAGTTTACACTTGCACAAAGAGAGGGTTTTGCTTCCCTCCTGCCTGAGCGGATGCCCACGCTGCAAGTAACGACGGAAGGGAATCATCTTCATATCGCTAACGACAGGGTGCAGCTCGTATTCGATCTCCATACGGCAGAACTTATTTGTTGGAACTATGGCAGCCACCCTGTGATTATCCCGAGGGGAGGCCCTGTCTATGACAATTTCCGTTGGGTAGAGAACGACTCCCCCTACGGAAGTATTCCTCCCGGAGCACCGGCCGGTCCGGTACAGCCTGCTGTTCCTTCCTACGAGGTCAATGCAGATTCCACACGGGTGATCCTCGCGGCGTCGCATCGTGCTCTCTGCCCTTATCGCCTTAACTATTATATATATGGAGACGGTACGGTGGATATTCGCGCAGACTTTACACCCGAGGAAGAGCACGCGGATAAGTTACGTAGACTTGGGATTAAAATGTGCCTGCCCCTGCAGATGGATCGAATCGAATATCTGGCACGAGGCCCTCATGAGAATTATGTGGATCGTAGGCAGAGTGCTTTCTTCGGACTGTATTCCGACCGTGTGAGCCGTATGGTCGAACCCTATGTACGCCCCCAGAGTACGGGCAATAGAACCGGCCTTAGAGCTCTGACCCTGACGGATGATTCCGGCAGGGGTATCAGGGTGGAAGCTTCGGGACAGGTCGATTTCTCCATTCTTCCCTATGAGGACGAACATCTTGCGCGGACTCGTCATCAATGGGAATTACCCATGCCTGCGCATCATATCTTGCGCTTCGACTATATGCAGCGCGGACTGGGCAATGGAAGTTGCGGGCCCGGTACTGCTCCGACATACCTTTGCCCCTCATCGGGCACTTATTCCTTCGAACTTCGTTTTCGTCCTCTC","6.40","-11.53","116198","VFGENKEDGHATFMPYATTALLQADERYQKPWLTPSQAEFLSLNGLWYFRYFPDARTARTDFVEDLFDVSAWDTITVPSCWQMKGWDTPLYINVNHIFEDNPPFIRIQKTYTSAVDPNPTGSYRRDFILPTGWEKKRVYLHFDGLYSGAYVWINGRYIGYTQGGNNDAEFDISAAVRAGQNNVSIQVVRWTDASYLEGQDMFHMSGLHRDVYLYATPRTSIRDHYITSKLHPESDYTTGEISVAVEMDNRDGSAARKTVGIRLLDPQGKVLWEERKQTRLSVGEQKQSLHFRKADLRNLSLWTAETPTLYTLIITQWDDKEREELAFATKYGFRQPEIRDQSVYLNGRKVLFKGVNTQDTHPLHGRSIDLPTMVKDITMMKQANVNTLRTSHYPRQPKMYALCDYYGLYVMDEADLECHKNWDDHGEKGGITNAESWRAQYVDRTVRMVCRDRNHPSVLFWSLGNESGGGENFRHTYAAVRALDSRIIHYEGATRGGTEYTDLHSVMYPSLAQVQAGSNGRETDGKPYFMCEYAHAMGNGVGNLQDYWDIMEQSSAGIGGCIWDWVDQAIYDPSEIKRGLYRLHTGYDYPGPHQGNFVNNGLVTADRSWTPKLYEVKKVYQYVKFDAYDSKSKLLTLHNAYSFTDLNRFGLRFKLLSDGCVIESGEVDLPKLPAGEKATLRIPVADIPMYSTRDFHIDFELFLREATTWSDKGYTVASEQFTLAQREGFASLLPERMPTLQVTTEGNHLHIANDRVQLVFDLHTAELICWNYGSHPVIIPRGGPVYDNFRWVENDSPYGSIPPGAPAGPVQPAVPSYEVNADSTRVILAASHRALCPYRLNYYIYGDGTVDIRADFTPEEEHADKLRRLGIKMCLPLQMDRIEYLARGPHENYVDRRQSAFFGLYSDRVSRMVEPYVRPQSTGNRTGLRALTLTDDSGRGIRVEASGQVDFSILPYEDEHLARTRHQWELPMPAHHILRFDYMQRGLGNGSCGPGTAPTYLCPSSGTYSFELRFRPL","957238 960441","TIGR ID: PG0896","beta-galactosidase","Outer membrane, Cytoplasm","Numerous hits in gapped BLAST to beta galactosidase sequences: residues 4-1013 are 36% similar to the enzyme from Thermatoga maritima (AE001776).This sequence is similar to BT2191.","
InterPro
IPR004199
Domain
Glycoside hydrolase, family 42, domain 5
PF02929\"[838-1015]TBgal_small_N
InterPro
IPR006101
Family
Glycoside hydrolase, family 2
PR00132\"[145-160]T\"[345-359]T\"[376-394]T\"[452-467]T\"[526-541]TGLHYDRLASE2
PS00608\"[452-466]TGLYCOSYL_HYDROL_F2_2
PS00719\"[386-411]TGLYCOSYL_HYDROL_F2_1
InterPro
IPR006102
Domain
Glycoside hydrolase family 2, immunoglobulin-like beta-sandwich
PF00703\"[234-334]TGlyco_hydro_2
InterPro
IPR006103
Domain
Glycoside hydrolase family 2, TIM barrel
PF02836\"[337-625]TGlyco_hydro_2_C
InterPro
IPR006104
Domain
Glycoside hydrolase family 2, carbohydrate-binding
PF02837\"[37-217]TGlyco_hydro_2_N
InterPro
IPR013781
Domain
Glycoside hydrolase, catalytic core
G3DSA:3.20.20.80\"[335-620]Tno description
InterPro
IPR013812
Domain
Glycoside hydrolase, families 2 and 20, immunoglobulin-like beta-sandwich
G3DSA:2.60.40.320\"[218-334]T\"[624-731]Tno description
InterPro
IPR014718
Domain
Glycoside hydrolase-type carbohydrate-binding, subgroup
G3DSA:2.70.98.10\"[733-1017]Tno description
noIPR
unintegrated
unintegrated
G3DSA:2.60.120.260\"[1-217]Tno description
PTHR10066\"[352-670]TGLYCOSIDE HYDROLASE
PTHR10066:SF8\"[352-670]TBETA-GALACTOSIDASE


","No hit to the COGs database.","***** IPB001649 (Glycosyl hydrolases family 2) with a combined E-value of 8.7e-100. IPB001649A 41-52 IPB001649B 91-106 IPB001649C 197-226 IPB001649D 298-312 IPB001649E 331-365 IPB001649F 376-413 IPB001649G 451-466 IPB001649H 483-492 IPB001649I 526-540 IPB001649J 557-570 IPB001649K 584-602","Residues 331-535 are 46% similar to a (BETA-GALACTOSIDASE HYDROLASE GLYCOSIDASE LACTASE) protein domain (PD002163) which is seen in BGAL_THEMA.Residues 842-1012 are 34% similar to a (BETA-GALACTOSIDASE LACTASE HYDROLASE GLYCOSIDASE SMALL) protein domain (PD003217) which is seen in BGAL_THEMA.Residues 61-230 are 45% similar to a (BETA-GALACTOSIDASE HYDROLASE GLYCOSIDASE LACTASE) protein domain (PD002797) which is seen in BGAL_THEMA.Residues 549-624 are 49% similar to a (BETA-GALACTOSIDASE LACTASE HYDROLASE) protein domain (PD003223) which is seen in BGAL_THEMA.","","Thu Jun 14 13:59:29 MDT 2001","","Thu Jun 14 13:59:29 MDT 2001","Thu Jun 14 13:59:29 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:59:29 MDT 2001","Thu Jun 14 13:59:29 MDT 2001","","","Tue Dec 19 10:48:32 MST 2000","Wed Dec 10 16:57:28 2003","Tue Dec 19 10:48:32 MST 2000","Mon Jun 18 09:56:11 MDT 2001","Mon Jun 18 09:56:11 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 5-968 share 30% identity with PG0598, a predicted beta-galactosidase.","Mon Jun 18 09:58:07 MDT 2001","Tue Apr 3 17:22:06 MDT 2001","-46% similar to PDB:1BGL BETA-GALACTOSIDASE (CHAINS A-H) (E_value = 2.5E_120);-46% similar to PDB:1BGM BETA-GALACTOSIDASE (CHAINS I-P) (E_value = 2.5E_120);-46% similar to PDB:1DP0 E. COLI BETA-GALACTOSIDASE AT 1.7 ANGSTROM (E_value = 2.5E_120);-46% similar to PDB:1F49 E. COLI (LAC Z) BETA-GALACTOSIDASE (NCS CONSTRAINED MONOMER-MONOCLINIC) (E_value = 2.5E_120);-46% similar to PDB:1F4A E. COLI (LACZ) BETA-GALACTOSIDASE (NCS CONSTRAINED MONOMER-ORTHORHOMBIC) (E_value = 2.5E_120);","","","Residues 37 to 217 (E-value = 7.6e-60) place PG0799 in the Glyco_hydro_2_N family which is described as Glycosyl hydrolases family 2, sugar binding domain (PF02837)Residues 219 to 334 (E-value = 2.9e-05) place PG0799 in the Glyco_hydro_2 family which is described as Glycosyl hydrolases family 2, immunoglobulin-like beta-sandwich domain (PF00703)Residues 337 to 625 (E-value = 6.4e-93) place PG0799 in the Glyco_hydro_2_C family which is described as Glycosyl hydrolases family 2, TIM barrel domain (PF02836)Residues 737 to 906 (E-value = 4.5e-08) place PG0799 in the Bgal_small_N family which is described as Beta galactosidase small chain, N terminal domain (PF02929)Residues 916 to 1014 (E-value = 2.6e-25) place PG0799 in the Bgal_small_C family which is described as Beta galactosidase small chain, C terminal domain (PF02930)","Wed Dec 10 16:57:28 2003","34540660","","","","","","1","","","PG0896" "PG0800","962564","960963","1602","ATGGAAAACGGCTGTGGTAAGATGGAGAGCTTCAGTCCGCAAGCACTGGAAATGATTCGGAGCCTCGGCACTACGCATATATGGTATATAGGTATGCTTGAGCAAGCAACTCAAACGAATTATAGCGATGCCGGTATTCTTCCCTGCCATCCCGAAATCGTCAAGGGGAAGGCAGGATCGCCTTACGCTGTCAGAGACTATTATGACGTATCGCCCGAATTGGCTACGAACATTCCCAACCGAATGGCAGAATTCCACGATCTGATCGAGCGCACACATCGTGCAGGCATGGGAGTGATCATGGACTTTGTCCCCAACCATGTAGCGCGTGAATATCGGTCGGACGTCAAACCATCGGGAACAAAAGATCTGGGAGAGGAAGACGATCCGCTTGTAGCATTCTCTCCCAACAACAATTTCTACTACCTGCCCGGAAAATGCCTCGAACTCGATTTTGGTGAGCGGAGCCGTACAATGATGCCTTATCACGAAGAGCCTGCAAGGGCAACGGGCAACGACCGATTTTCCTCTCATATCGATAAGGAGGATTGGTACGAAACGGTGAAATTGAATTACGGCATCGACTACCTGAATGGAGGAAGCAAACACTTCGATCCTCTACCGGACACGTGGATTCGGATGCGAGATATTCTGCTCTTTTGGGCAAGCAAAGGAATCGATGGATTCCGCTGTGACATGGCCGAAATGGTGCCGGTGAAATTCTGGGAATGGGCAATACCGCAAATTCGCGAAAGGCACTCGGTCTTATTCATCGCAGAAATCTATCGGCCCGAGCTGTACGAGAGCTATCTCCAAGCAGGGTTTGACTATCTGTATGACAAGGTGGGCATGTACGACTGTCTCCGTACCGTTATCTGCGGATACGGCTCCGCTTCGGATATATCACGAGTAGTCCGACAAACAGAACGATTTGCCGACAATATGCTCTACTTCCTTGAGAACCACGATGAGCAGCGCATAGCTTCGGATTTCTTTGCCGAAGACGCACGGAAAGCTCTGCCGGCAGTAACGATAGCCGCCACAATAGGACGAAATCCCTTCATGCTTTACTTTGCTCAGGAACTCGGCGAACGCGGAATGGATGCCGAAGGGTTCAGCGGAAAAGACGGGCGCACCACGATATTTGACTATTGGAGTTTGGACAAGATGCAACGCCGCATCAATGACGGACGATACGATACGACGATGTTATCCGAAGAAGAACGCCTCTTACTGCAAAGTTATACCCGTCTCTTACACGATGTTTGCGCCCTGCCATCAGTCATTCAAGGAAGCTTCTACGACCTCGGCTATGCCAATCAGAACAATCCTTACTTCCGACCGAATCGAGAGTTTGCCTTTCTTCGCCATACAACGGACGAAATACTTCTTGTCGCAGCCAATTTTGCCCCACACGAAGCAGAAATCAGGGTGATTATTCCCGAACACGCCTTTCAGACGATGCAGATAAAGGACAATGCAGCTTTCCTGCTGACCGATATGCTCTCCGGAGAAAACAGCATCGGCTGTCTCACCCAATACGCCCCCTACCCGCTACATCTTCCGGCCTACGGCTATGCCCTGCATCGCTTCCGTCCGCTT","5.00","-20.47","61441","MENGCGKMESFSPQALEMIRSLGTTHIWYIGMLEQATQTNYSDAGILPCHPEIVKGKAGSPYAVRDYYDVSPELATNIPNRMAEFHDLIERTHRAGMGVIMDFVPNHVAREYRSDVKPSGTKDLGEEDDPLVAFSPNNNFYYLPGKCLELDFGERSRTMMPYHEEPARATGNDRFSSHIDKEDWYETVKLNYGIDYLNGGSKHFDPLPDTWIRMRDILLFWASKGIDGFRCDMAEMVPVKFWEWAIPQIRERHSVLFIAEIYRPELYESYLQAGFDYLYDKVGMYDCLRTVICGYGSASDISRVVRQTERFADNMLYFLENHDEQRIASDFFAEDARKALPAVTIAATIGRNPFMLYFAQELGERGMDAEGFSGKDGRTTIFDYWSLDKMQRRINDGRYDTTMLSEEERLLLQSYTRLLHDVCALPSVIQGSFYDLGYANQNNPYFRPNREFAFLRHTTDEILLVAANFAPHEAEIRVIIPEHAFQTMQIKDNAAFLLTDMLSGENSIGCLTQYAPYPLHLPAYGYALHRFRPL","962654 960963","TIGR ID: PG0897","conserved hypothetical protein","Cytoplasm, Extracellular","Numerous significant hits in gapped BLAST to conserved hypothetical protein; e.g. residues 16-336 are 26% similar to gb|AAD36717.1|AE001807_8 alpha-amylase, putative of Thermotoga maritima, residues 36-279 are 25% similar to emb|CAB87126.1| putative alpha amylase of Rhodobacter sphaeroides, residues 67-279 are 27% similar to gb|AAG05539.1|AE004642_6 conserved hypothetical protein of Pseudomonas aeruginosa.This sequence is similar to BT0773.","
InterPro
IPR006047
Domain
Glycosyl hydrolase, family 13, catalytic region
PF00128\"[82-331]TAlpha-amylase
InterPro
IPR013781
Domain
Glycoside hydrolase, catalytic core
G3DSA:3.20.20.80\"[14-385]TGlyco_hydro_cat
noIPR
unintegrated
unintegrated
PTHR10357\"[62-109]T\"[158-297]T\"[315-475]TPTHR10357
PTHR10357:SF11\"[62-109]T\"[158-297]T\"[315-475]TPTHR10357:SF11
SSF51011\"[441-532]TSSF51011
SSF51445\"[5-431]TSSF51445


","BeTs to 4 clades of COG0366COG name: GlycosidasesFunctional Class: GThe phylogenetic pattern of COG0366 is ----Y-VcEBR----------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 14:00:07 MDT 2001","","Thu Jun 14 14:00:07 MDT 2001","Thu Jun 14 14:00:07 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 14:00:07 MDT 2001","Thu Jun 14 14:00:07 MDT 2001","","","Mon Jan 8 13:55:55 2001","Wed Dec 3 09:19:02 2003","Mon Jan 8 13:55:55 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Jun 14 14:00:07 MDT 2001","-41% similar to PDB:1WZA Crystal structure of alpha-amylase from H.orenii (E_value = 1.2E_17);","","","Residues 8 to 391 (E-value = 6.5e-06) place PG0800 in the Alpha-amylase family which is described as Alpha amylase, catalytic domain (PF00128)","Mon Jun 18 10:01:21 MDT 2001","34540661","","","","","","1","","","PG0897" "PG0801","963442","962654","789","ATGGCTCAGTCATCATATCAAACCGCACCGCATCGGATAGGCTTGGCTCTTAGCGGCGGAGCGGCCAAAGGCTTTGCACATTCGGGAGTACTCCATGCTCTTGAGGACAATGGGATTCGTCCCGACATCATAGCAGGTACGAGTGCAGGAGCGTTGGTAGCTGCACTCTATGCCGATGGATACAGGCCCGAAGAGATTCCACAATTATTCCGAGGCAAAAATTTCAGATTCCTAACAGAGTGGCAAATACCACAAAGAGGTGTATTCAGCATCCAACGCTTCAAGAGTTTTCTTCGCTCGACTTTACGCCACAAGAATATCGAAGACCTACCCCTTCCGATCAGAATAGTGGCAACGGACCTTGACCGTGGAGTTGTCAAAGTTTTTTCACAAGGCTCTCTCGTCGAGACTGTCACGGCTTCCTGTAGCATTCCGATCCTATTCAACCCTGTAGAGATAGATGGAACCACCTATGTCGATGGAGGACTGTTCAAAGACCTTCCGGCTTCTGTCATTCGTGAAGACTGCCGTTATCTCATAGGAGTACACCTCAATCCCAAAGAGCCTTCCGACTATAAAAAGAGTCTTTTCGGCATTGCAGAGCGTTGCTTCGGCTACATCTTCCGAGCGAACTCCCTGCCCGATCGCAAGCTGTGCGATTTGCTGATCGAATCAAGAGAAATAATCAAGTTCAAACCATTCCACGTGGAGCCGGCAGAAGAAATTGCCGCTTTCGGATACAAAATGGCCAAACAAGTTCTTAAAACGACCTCGATAACGCGGAATCCA","9.20","6.26","29183","MAQSSYQTAPHRIGLALSGGAAKGFAHSGVLHALEDNGIRPDIIAGTSAGALVAALYADGYRPEEIPQLFRGKNFRFLTEWQIPQRGVFSIQRFKSFLRSTLRHKNIEDLPLPIRIVATDLDRGVVKVFSQGSLVETVTASCSIPILFNPVEIDGTTYVDGGLFKDLPASVIREDCRYLIGVHLNPKEPSDYKKSLFGIAERCFGYIFRANSLPDRKLCDLLIESREIIKFKPFHVEPAEEIAAFGYKMAKQVLKTTSITRNP","963442 962654","TIGR ID: PG0898","conserved hypothetical protein","Cytoplasm","Numerous significant hits in gapped BLAST to conserved hypothetical protein; e.g. residues 13-255 are 35% similar to gb|AAC07357.1| hypothetical protein of Aquifex aeolicus, residues 8-251 are 34% similar to dbj|BAA89379.1| ORF5 of Moritella marina, residues 4-198 are 37% similar to gb|AAF82879.1|AE003860_6 conserved hypothetical protein of Xylella fastidiosa.","
InterPro
IPR002641
Family
Patatin
PF01734\"[15-173]TPatatin
noIPR
unintegrated
unintegrated
G3DSA:3.40.1090.10\"[15-171]TG3DSA:3.40.1090.10
PTHR14226\"[13-173]TPTHR14226
SSF52151\"[8-181]TSSF52151


","BeTs to 8 clades of COG1752COG name: Putative phosphoesterases, homologs of neuropathy target esteraseFunctional Class: RThe phylogenetic pattern of COG1752 is ----yqv-EBR------l--xNumber of proteins in this genome belonging to this COG is 2","***** IPB001423 (Uncharacterized protein family UPF0028) with a combined E-value of 2.9e-39. IPB001423A 13-58 IPB001423B 114-150 IPB001423C 154-185","Residues 13-255 are 35% similar to a (PROTEIN TRANSMEMBRANE INTERGENIC REGION) protein domain (PD004383) which is seen in O67393_AQUAE.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Mon Jan 8 13:59:54 2001","Mon Jan 8 13:59:54 2001","Mon Jan 8 13:59:54 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 15-238 are 26% similar to PG1636.","Mon Jan 8 14:00:53 2001","","No significant hits to the PDB database (E-value < E-10).","","","Residues 15 to 173 (E-value = 4.6e-43) place PG0801 in the Patatin family which is described as Patatin-like phospholipase (PF01734)","","34540662","","","","","","1","","","PG0898" "PG0802","964752","963592","1161","ATGGAATACGCATTGTTACAACACTACTGGTGGTTCCTCGTCTCATTACTGGGAGCACTCTTGGTTTTCTTGCTATTTGTACAAGGAGGACAGTCATTCCTCTTCAGTCTTGGCAAAGATGAACTGACTCAGAAAATGATGGTCAATTCGACCGGACGCAAATGGGAGTTCACTTTCACTACATTGGTTACTTTCGGAGGAGCTCTCTTTGCTTCGTTTCCTCTTTTCTATAGCACCAGCTTCGGAGGAGCATATTGGGTATGGATGCTGATCCTCTTCTGCTTCATTATCCAAGCTGTCTCCTACGAGTATCAATCCAAACATGGTAATGTATGGGGGAGGAAAACCTACCAAATACTGCTTTTCATCAATGGTGTACTGGCTCCGGTTCTGCTCGGAACCGCTGTTTCCACATTCTTTACGGGCAGCAGCTTCGTGGTAAACAAGATGGCGATGTTCGACCTCTCCGGCGGCAACCAGATCGTTTCTGCCTGGCAGCCCTTCAATGGGTGGCAACTGAGAGGCCTTGAAGCTGTTTTGAACCTGTGGAACGTGGTTCTCGGATTGGCTGTATTCTTCCTTGCCAGAGTATCGGCTCTGCTTTATTTCATCAATAATATCGATGACGAAAGTCTCTATGCGGCAGCCAAACGCCGACTTTGGGCCAATACGGTCGCATTCCTGATTTTCTTTCTGGCATACATAGCTTTCCTGCTGACTACGGAAGGATTTGCCGTGAATCCCGTTTCCAAAGAGGTGTATATGGAGCCATACAAGTACCTGTACAATTTCTTGGATATGCCGGCCGTTCTGGCTGTATTCCTGTTGGGAGTAATCCTCGTACTTGGCGGTATAGGTTTGACTCTACTGCGTAAAGGCTTCAAACGCGGAATCTGGCTACACGGTACGGGAACCGTACTGACTGTGCTTGCCCTACTACTTGTAGCCGGTTGGAACGATACGTCTTGGTACCCCTCCACATACGATCTGCAAAGTTCGCTTACGATCGAGAATGCCAGCTCCAGCCATTTCACGCTGAAGGTAATGAGCTACGTCTCTCTCCTTATTCCTTTCGTTTTGGCTTACATTTTCTATGCTTGGCGCGCACTGGACATTCGTAAAATCACAAAAAAAGAAATGGAGCAGGACGATCACGTCTAT","9.40","4.15","43878","MEYALLQHYWWFLVSLLGALLVFLLFVQGGQSFLFSLGKDELTQKMMVNSTGRKWEFTFTTLVTFGGALFASFPLFYSTSFGGAYWVWMLILFCFIIQAVSYEYQSKHGNVWGRKTYQILLFINGVLAPVLLGTAVSTFFTGSSFVVNKMAMFDLSGGNQIVSAWQPFNGWQLRGLEAVLNLWNVVLGLAVFFLARVSALLYFINNIDDESLYAAAKRRLWANTVAFLIFFLAYIAFLLTTEGFAVNPVSKEVYMEPYKYLYNFLDMPAVLAVFLLGVILVLGGIGLTLLRKGFKRGIWLHGTGTVLTVLALLLVAGWNDTSWYPSTYDLQSSLTIENASSSHFTLKVMSYVSLLIPFVLAYIFYAWRALDIRKITKKEMEQDDHVY","964752 963592","Subunit I is immediately upstream, PG0803.TIGR ID: PG0899","cytochrome d oxidase subunit II","Inner membrane, Cytoplasm","Numerous significant hits in gapped BLAST to cytochrome bd oxidase subunit II protein; e.g. residues 1-387 are 43% similar to emb|CAB72568.1| cytochrome bd oxidase subunit II of Campylobacter jejuni, residues 1-385 are 22% similar to gb|AAC73828.1| cytochrome d terminal oxidase polypeptide subunit II of Escherichia coli K12, residues 1-385 are 21% similar to emb|CAA71118.1| subunit II of cytochrome bd of Klebsiella pneumoniae.This sequence is weakly similar to CT014, a predicted cytochrome d oxidase subunit II (5e-09, and to BT1209. See PG0803 for the subunit I sequence.","
InterPro
IPR003317
Family
Cytochrome bd ubiquinol oxidase, subunit II
PF02322\"[4-371]TCyto_ox_2


","BeTs to 7 clades of COG1294COG name: Cytochrome bd quinol oxidase and cytochrome oxidase complexes, subunit 2Functional Class: CThe phylogenetic pattern of COG1294 is -----q-cEbrh------inxNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 37-268 are 24% similar to a (OXIDASE SUBUNIT CYTOCHROME II) protein domain (PD005057) which is seen in CYDB_ECOLI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Tue Mar 26 17:43:18 2002","Tue Apr 17 10:15:12 MDT 2001","Thu Dec 4 11:53:12 2003","Tue Mar 26 17:43:18 2002","","Fri Mar 9 15:26:09 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Mar 9 15:26:09 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 4 to 371 (E-value = 2.8e-10) place PG0802 in the Cyto_ox_2 family which is described as Cytochrome oxidase subunit II (PF02322)","Fri Mar 9 15:26:09 MST 2001","34540663","","","","","","1","","","PG0899" "PG0803","966381","964801","1581","ATGAATTTAGATGCCTTAGTAAGCTGGTCACGTGCACAGTTTGCTCTTACAGCCATGTATCACTGGCTGTTTGTTCCGCTGACACTGGGATTGGGTGTCATCATGGCTATCGTGGAGACCATCTATTATCGCAATGGCAAACCGGAGTGGAAGCGTTATGCTCAGTTCTGGCAGAAGCTATTCGGTATCAACTTTGCGATCGGTGTGGCCACAGGAATCATTCTCGAATTCGAGTTCGGTACCAACTGGTCTAATTACAGTCTCTTTGTGGGCGATATCTTCGGAGCGCCATTGGCCATCGAAGGTATTTTGGCTTTCTTCATGGAGGCTACTTTTATTGCCGTTATGTTCTTTGGCTGGAACAAGGTGAGCAAAGGTTTTCACCTAAGTGCCACATGGCTGACCATCATCGGAGCCAGCTTGTCAGCCGTATGGATTCTTATCGCCAATGCATGGATGCAGGAGCCGGTAGGAATGACCTTCAACCCCGATACGATGCGCAACGAAATGACGGATTTCTGGGCTTTGGTATTCTCTTCCACTGCGATCAATAAGTTCTGGCACACGATCTCTTCCTGCTGGACTCTCGGATCCGTATTTGCTTTGGGCGTATGTGGCATCTACCTGCTGCGAAAGGATGACAAACACAAGGACTTTGCTCTCAAAAACATCAAGATCATCGCTCCATTCGGCTTGGCTGCTTCGCTTATCACAGCTTTCACCGGCGACACCTCTGCCTACAACGTGGCACAAAAGCAACCGATGAAGCTCGCTGCCATGGAAGCTCTGTACGATTCCGGACAAACGGACAAAGATGGACTCACTGCCGATGGTAAGGGTCTTCCGCTCAGCCTCTTCGGCATCCTCAATCCGGCGAAAGAAACACCGCAGGACGATAAGGAAGCTTTCCTCTTCAACGTATCGGTTCCGCGCGTACTCTCTGTCTTGGGAACTCGCAACCCCAGTGGTTATGTACCGGGTATCAACAACATCCTCGAAGGCGGCTATGTAAAGGCCGATGGCACTACCGCTATTCCGGTGGATAGTATGATGCAGCGCGGACGCAGAGCGATCATGGCTCTGAACGACTACAGCAAGGCCAAACAAGCCGGCGACATGGAAGCTGCCCTACAGCACAAATCCGTTATAGACGAGAATTTCCCCTATTTCGGCTATAGCTATATCCAGCACAAGAACGACATAGTTCCCCCCGTTGGGCTGACCTACTACAGCTTCCGTATCATGGTGGGACTCGGTATGCTGTTCATCCTGTTATTCCTCATGGCATGGCTCCTGAGCTTCAAACCGGAAAAATTCAGCAAAATGCGATGGTTCCACATGATCGCTATCGTATGTATGCCTCTTGCATGGGTAGCCAGTCAGAGTGGCTGGATCGTAGCGGAAGTGGGACGTCAGCCGTGGACAATCCAAGATTTATTGCCCGTACAGGCAGCCGTATCCAAACTGGAAGCCGGCTCCGTGATCATCACTTTCTTTGTTTTCCTCGTACTCTTCTCTGCTTTGCTCGTTGCCGAGCTGAATATCATGCGCAAGGCGATCAAGAAAGGCCCCGAGACGGAA","8.30","3.56","58692","MNLDALVSWSRAQFALTAMYHWLFVPLTLGLGVIMAIVETIYYRNGKPEWKRYAQFWQKLFGINFAIGVATGIILEFEFGTNWSNYSLFVGDIFGAPLAIEGILAFFMEATFIAVMFFGWNKVSKGFHLSATWLTIIGASLSAVWILIANAWMQEPVGMTFNPDTMRNEMTDFWALVFSSTAINKFWHTISSCWTLGSVFALGVCGIYLLRKDDKHKDFALKNIKIIAPFGLAASLITAFTGDTSAYNVAQKQPMKLAAMEALYDSGQTDKDGLTADGKGLPLSLFGILNPAKETPQDDKEAFLFNVSVPRVLSVLGTRNPSGYVPGINNILEGGYVKADGTTAIPVDSMMQRGRRAIMALNDYSKAKQAGDMEAALQHKSVIDENFPYFGYSYIQHKNDIVPPVGLTYYSFRIMVGLGMLFILLFLMAWLLSFKPEKFSKMRWFHMIAIVCMPLAWVASQSGWIVAEVGRQPWTIQDLLPVQAAVSKLEAGSVIITFFVFLVLFSALLVAELNIMRKAIKKGPETE","966387 964801","Subunit II is immediately downstream, PG0802.TIGR ID: PG0900","cytochrome d oxidase subunit I","Inner membrane, Cytoplasm","Numerous significant hits in gapped BLAST to cytochrome d oxidase subunit I protein; e.g. residues 1-523 are 52% similar to emb|CAB72567.1| cytochrome bd oxidase subunit I of Campylobacter jejuni], residues 1-527 are 40% similar to gb|AAG01152.1|AF284438_3 cytochrome d oxidase subunit of Brucella abortus, residues 4-526 are 39% similar to gb|AAA22123.1| cytochrome d subunit I of Azotobacter vinelandii.This sequence is similar to CT013 (4e-49) and to BT1210; see PG1388, PG0802, and PG1161. ","
InterPro
IPR002585
Family
Cytochrome bd ubiquinol oxidase, subunit I
PF01654\"[9-526]TBac_Ubq_Cox


","BeTs to 8 clades of COG1271COG name: Cytochrome bd quinol oxidase, subunit 1Functional Class: CThe phylogenetic pattern of COG1271 is A----q-cEBrh------inxNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 400-524 are 31% similar to a (SUBUNIT I CYTOCHROME OXIDASE D OXIDOREDUCTASE ELECTRON) protein domain (PD003558) which is seen in O05191_KLEPN.","","Thu Jun 14 14:00:37 MDT 2001","","Thu Jun 14 14:00:37 MDT 2001","Thu Jun 14 14:00:37 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 14:00:37 MDT 2001","Thu Jun 14 14:00:37 MDT 2001","","Tue Mar 26 17:44:20 2002","Tue Mar 21 12:57:27 MST 2000","Thu Dec 4 11:54:33 2003","Tue Mar 26 17:44:20 2002","","Mon Jun 18 10:12:36 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Mar 9 15:26:40 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 9 to 527 (E-value = 1.5e-163) place PG0803 in the Bac_Ubq_Cox family which is described as Bacterial Cytochrome Ubiquinol Oxidase (PF01654)","Mon Jun 18 10:12:36 MDT 2001","34540664","","","","","","1","","","PG0900" "PG0804","966655","966410","246","ATGACAACAATCAAAGCAAAGCGCGAGAACTTGTTCATGCGTATAGCTCGCTTTTATATAGATGGCTTCAGGAATATGAAATTGGGAAAGACGCTATGGGCTATTATCCTCATCAAACTATTCATCATGTTCGCCATCCTGAAAGTATTCTTCTTCCCGAACTTTCTGAAGCAACAGGTCGGTAGCGACAGCACTGCCAAATCCGAATATGTGCAGCAGGAACTTATCAAACGTGGAATAAACCCC","11.20","8.98","9662","MTTIKAKRENLFMRIARFYIDGFRNMKLGKTLWAIILIKLFIMFAILKVFFFPNFLKQQVGSDSTAKSEYVQQELIKRGINP","966655 966410","TIGR ID: PG0901","hypothetical protein","Inner membrane, Cytoplasm","No significant hits in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-47]?signal-peptide
tmhmm\"[32-52]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Mon Jan 8 14:37:14 2001","Mon Jan 8 14:37:14 2001","Mon Jan 8 14:37:14 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540665","","","","","","1","","","PG0901" "PG0805","969063","966841","2223","ATGCGCTTTCTCCCCTACCCCATAGCTTTTCTTTCCATTATTCTCTTGCTTTCATGTGCAGGCCGCAAAAGAGGAAAAGATATTGACTTCACAAAGTATGTGAATCCCCTTATTGGAACCGACTGGGTAGGCAATACATACCCGGGGGCTACGGTTCCTTTCGGTATGGTACAGCTAAGCCCTGACAACGGGAAAAGCGGCTGGGACTATATAGCCGGATACTATTATCCCGACACGATGATAGCAGGCTTCAGCCATACGCATCTGAGCGGAACAGGTGCGGGTGACCTCTATGACATTCGCTTTATGCCAATCGGCAAAAGTTCTCCGGATGAAGTCGTCCCTAAGGACCACATACGGACCTCATTCAGCCACAAAAACGAAAAAGCCGAATCCGGATATTATGCCGTGAGGTTGGACAATGGTATCAAGGTGGAGCTGACGGCCACCGAACATTGTGGCATTCAACGCTATACAATTCAGGACTCCGTACTGGAAGTTCGCCTCGATCTCAATAGCACGATGAATTGGGACAGGACGACAGACAGCCGTCTGCAGCTGATCGACAGCCACACGATAAGCGGTTATCGCTTCTCGGACGGTTGGGCACGGGATCAGCGCATATTCTTCCGCAGCAGATTTTCTCTTCCGATAGAGCAGTTCACGATAGACAGTGTACCCCAATATGCCAATAACGATACGACGCAATTCATTGGTTACGGCCTTGTAGCCCACCTTTCGTTTTTAATAGCCAAGTCCGACAGCACGCTGACGATCTCCACCGCCCTATCGGGCGTGGACGAAAAGGGAGCGGCTAACAATCTGGCGAAAGAAGCTCCCCACCACGATTTCGACCGCTACCGTGCGGAAGCATCGCTGCTGTGGCAACGTGCCTTGTCGCGTATAGTGGCGGAAAAAGGAATATCGCCCCGAGTGGACACTATTTTCTATACCGCGCTCTATCACAGTCTGCTCTGCCCGACGGTTTTCAGCGATGCAGATGGCCGTTACAGAGGAGCGGACAAAAAGATCCATACGCTAAAGACGGCACGCAAACACTACAGTACCTTCTCGCTCTGGGACACCTACCGAGCTGCCCACCCCTTGTACAACATCCTTTTTCCCGAACGTGCAGCCGATATGGCAGAAAGTCTCGTCGCTTTCGGTGAGCAAAACGAAGGGCTGCTGCCCGTTTGGACGATGTGGGCCGGAGAAACCGGTATGATGATCGGCTACCATTCCATACCGGTCATCGTAGAAGCCTATCGGAAAGGCAATTACAAAGAGAATCCGCAGCGCATCATGCGCCTGTTGGTTTCGACCATGGAAAAAACCGGCAGAACCGATACGGACAATTATCGTCATTTGGGCTATGTGCCGGCCGACTGTACGAACTGGAGCTTGAGCAAGACGATGGAATACGCCTACGACAATGCCTGCATCGCACTCTTTGCAAGGGAAAACGCAGCGGCAGCCAAGCGGTCGATGGCATATGCGCACCACGCCAAGGCATACCAAGAGGTATATGATCCGGCAAGCGGTTTCTTCAGACCCAAATTAGCATCGGGGGAATGGAAACTTCCTTTCGATCCTTTCGAATACACTGAGGACATCACAGAGAGTAATGCATGGCAATATCTCTTCGGAGTCCAGCATGATACAGAAGGTCTCATGGAACTGATGGGCGGTGCAGATTCGATGGCTCGCCGTCTTGGCCTCTTTTTCGGCACTCCTACTCCCTCTCATATAGCATTGCCGATTTTCAGTACGGGAATGATCGGACAATATGCCCACGGCAATGAGCCGAGCCATCACGTGGCTTACTTGTACAACAAGGTATCGCAGCCATGGAAAGGAGCGGGGATAATACGCCGCATCCTGACAGAACTATACAAAAATACCCCTGACGGCCTATGCGGAAACGAAGACTGCGGCCAACTTTCGGCTTGGTACGTATTCTCAGCCCTGGGGTTCTATCCGGTGGATCCAATAAGCGGCCATTACGAACTGGGATCACCCCTGTTCGAACATGTGACTATCCCTCAGCCCAATGGTCGTATCTTTCGACTGACGGCTCACAATCTAAGTGAGAAGAACCGGTATATCGAGTCCGTAAAAGTGGATGGCAAACCCTATCACAGGTCATATATCACATGGAATCAGATTCGATCCGGTGCGCATGTGGAGCTTTTCATGACCTCTCGCGAGGGACATTGCTGGTAT","7.00","0.00","83753","MRFLPYPIAFLSIILLLSCAGRKRGKDIDFTKYVNPLIGTDWVGNTYPGATVPFGMVQLSPDNGKSGWDYIAGYYYPDTMIAGFSHTHLSGTGAGDLYDIRFMPIGKSSPDEVVPKDHIRTSFSHKNEKAESGYYAVRLDNGIKVELTATEHCGIQRYTIQDSVLEVRLDLNSTMNWDRTTDSRLQLIDSHTISGYRFSDGWARDQRIFFRSRFSLPIEQFTIDSVPQYANNDTTQFIGYGLVAHLSFLIAKSDSTLTISTALSGVDEKGAANNLAKEAPHHDFDRYRAEASLLWQRALSRIVAEKGISPRVDTIFYTALYHSLLCPTVFSDADGRYRGADKKIHTLKTARKHYSTFSLWDTYRAAHPLYNILFPERAADMAESLVAFGEQNEGLLPVWTMWAGETGMMIGYHSIPVIVEAYRKGNYKENPQRIMRLLVSTMEKTGRTDTDNYRHLGYVPADCTNWSLSKTMEYAYDNACIALFARENAAAAKRSMAYAHHAKAYQEVYDPASGFFRPKLASGEWKLPFDPFEYTEDITESNAWQYLFGVQHDTEGLMELMGGADSMARRLGLFFGTPTPSHIALPIFSTGMIGQYAHGNEPSHHVAYLYNKVSQPWKGAGIIRRILTELYKNTPDGLCGNEDCGQLSAWYVFSALGFYPVDPISGHYELGSPLFEHVTIPQPNGRIFRLTAHNLSEKNRYIESVKVDGKPYHRSYITWNQIRSGAHVELFMTSREGHCWY","969105 966841","TIGR ID: PG0902","conserved hypothetical protein (immunoreactive 89kD antigen PG87)","Cytoplasm","PG0805 is essentially identical to a previously sequencedP.gingivalis protein in GenBank, AAD51075. The sequence is similar to BT3994.Numerous significant hits in gapped BLAST; e.g. residues 29-732 are 40% similar to gb|AAF83652.1|AE003923_10 conserved hypothetical protein of Xylella fastidiosa, residues 27-724 are 35% similar to emb|CAB61925.1| putative secreted protein of Streptomyces coelicolor A3(2), residues 32-740 are 32% similar to emb|CAA17455.1| hypothetical protein Rv0584 of Mycobacterium tuberculosis.","
InterPro
IPR005887
Family
Alpha-1,2-mannosidase, putative
TIGR01180\"[1-740]Taman2_put
InterPro
IPR012939
Domain
Glycosyl hydrolase 92
PF07971\"[237-736]TGlyco_hydro_92
noIPR
unintegrated
unintegrated
PS51257\"[1-19]TPROKAR_LIPOPROTEIN


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 133-740 are 31% similar to a (PROTEIN PUTATIVE SECRETED) protein domain (PD148719) which is seen in O86365_MYCTU.","","Thu Jun 14 14:01:20 MDT 2001","","Thu Jun 14 14:01:20 MDT 2001","Thu Jun 14 14:01:20 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 14:01:20 MDT 2001","Thu Jun 14 14:01:20 MDT 2001","","","Wed Mar 14 14:16:08 MST 2001","Sat Jan 3 10:43:25 2004","Mon Jan 8 16:31:14 2001","","Mon Jun 18 10:18:33 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 30-738 are 32% similar to PG1493, residues 11-735 are 29% similar to PG0871 and residues 14-740 are 26% similar to PG1492.","Mon Jun 18 10:21:09 MDT 2001","Wed Mar 14 14:16:08 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jun 18 10:18:33 MDT 2001","34540666","","","","","","1","","","PG0902" "PG0806","969732","969193","540","ATGAGCAAACTTGTAGGGAATCTCATCCCCAACACTTTCTTCATTACCAAGGGTAGTGGCGAGTCTGATCTGGAACTGCATGCCGGTTCGTATCACATGGCTTTGTTCGACGCCGGGATCTCGGACTTCAATATCATGACTTACTCCTCCGTACTGCCTGCGACAGCTCATTTGGCCACAATGGACGAAATAGACCTGCCGCCTTTCGGCTCTGAACTGAAAACGATCATGGCCGTTTCGCACGGCTATCAGGACGAATTCGTTTCGGCCGGAGTGGTGTATGCATGGATGTACAAGGATGAGAATTTCGACGAGAAGGCCGGAGGCCTCGTATGCGAGGTTAGCGGACGCTACCGTATCGAAGAGCTGGAGTCCCGTCTGATCCGCGTTATCAACGATCTGCACCAGAAGACCTACAGCCAATACTACCTCGGAGAGCTGAACTTCATCACCGAGGGTATCACGATCGAGAAGCGATACGGTACGGCTTTGGCCGGTTTGTGTTTCATGGATTTCATCCAACCCGAAGTACAGAAAAAG","4.60","-9.89","20174","MSKLVGNLIPNTFFITKGSGESDLELHAGSYHMALFDAGISDFNIMTYSSVLPATAHLATMDEIDLPPFGSELKTIMAVSHGYQDEFVSAGVVYAWMYKDENFDEKAGGLVCEVSGRYRIEELESRLIRVINDLHQKTYSQYYLGELNFITEGITIEKRYGTALAGLCFMDFIQPEVQKK","969732 969193 [Shadowed by 1042]","TIGR ID: PG0903","conserved hypothetical protein","Cytoplasm","Two significant hits in gapped BLAST; e.g. residues 5-155 are 27% similar to emb|CAC11909.1| conserved hypothetical protein of Thermoplasma acidophilum, residues 6-172 are 28% similar to gb|AAF39478.1| conserved hypothetical protein of Chlamydia muridarum.","
InterPro
IPR002724
Family
Pyruvoyl-dependent arginine decarboxylase
PD010449\"[10-82]TDUF44
PF01862\"[8-63]TPvlArgDC
noIPR
unintegrated
unintegrated
G3DSA:3.50.20.10\"[9-172]TG3DSA:3.50.20.10
SSF56271\"[2-172]THis_carbxylase


","BeTs to 5 clades of COG1945COG name: Uncharacterized ACRFunctional Class: SThe phylogenetic pattern of COG1945 is Amtk--------------in-Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Mon Jan 8 16:33:55 2001","Mon Jan 8 16:33:55 2001","Mon Jan 8 16:33:55 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","Residues 8 to 171 (E-value = 7e-07) place PG0806 in the PvlArgDC family which is described as Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) (PF01862)","","34540667","","","","","","1","","","PG0903" "PG0808","970715","970389","327","TTGCGGATTCCACCAACGATGAGACCCGCCTATCACGATGCAAAATTACAGTTTTTTTTATATGTAGCTCATTTTCATTCGGATTCCTTCGCTACAGTACCATCGGGCAGTGCTGTAACGACATCAGCCAATTCACTGTTCGGTTCTTTTTCTACCTTTGTATTCGATAAGGCTTACATCGGCAAAAACACATGGCATCCGAAAGCCTTATTGTATGAATATAATTACAAGACACAAACGGCAAAAATATATATACATGTATCCGACTCCTCACACACTTCACCGGCCTCTCCGGCTTATCCTATCTTGCCCTATATCATACGATTG","10.30","5.42","12275","LRIPPTMRPAYHDAKLQFFLYVAHFHSDSFATVPSGSAVTTSANSLFGSFSTFVFDKAYIGKNTWHPKALLYEYNYKTQTAKIYIHVSDSSHTSPASPAYPILPYIIRL","970715 970389","MD May be continuation of 806 and 807.NO TIGR ID corresponds to this gene.","hypothetical protein","Periplasm, Extracellular","No significant hits in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Wed Mar 14 14:29:07 MST 2001","Mon Jan 8 16:36:39 2001","Mon Jan 8 16:36:39 2001","Mon Jan 8 16:36:39 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 14 14:29:07 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Mar 14 14:29:07 MST 2001","","","","","","","1","","","" "PG0809","970758","971207","450","ATGAAAAAAATTCTTGGTTTCGCCATGTTGAGCGTTGCATTGGTTGCTTGTGGCGGAAATAAAAATGAGCAGGATGCTGCTGCCGATAGCGCACGTATTGCTGATTCTATAGCACAGGTAGAGGCTGCGGCTGCTGCCGATGTAGAGCGCTTTGTAGGTACCTATACAGGCCTTATTCCTGCTGCCGATGCAGAGGGATTCGATGTTAAGTTGGTATTGAATGCAGACAGAACTTTTGCTCTGGAAGAAGTAGCCAAGGGTGGAAAAGAAGACGGTTCCGGATCTACGAATAGCGGTGCTTTTACCATTAGTGGCGACACGGTATCTCTTGCAAGGGAAGGAGAGGTTTCTCCTCTTCGGCTTGTGTTGAACGCAACTGCCGATTCGTTGCATTATGACGGAGTTCAGGATGAAAAGATGGCTCCTTTCTACGTATTGGCCAAGCAGAAA","4.40","-7.81","15540","MKKILGFAMLSVALVACGGNKNEQDAAADSARIADSIAQVEAAAAADVERFVGTYTGLIPAADAEGFDVKLVLNADRTFALEEVAKGGKEDGSGSTNSGAFTISGDTVSLAREGEVSPLRLVLNATADSLHYDGVQDEKMAPFYVLAKQK","970758 971207","TIGR ID: PG0906","hypothetical protein","Periplasm, Outer membrane, Cytoplasm","No significant hits in gapped BLAST. All hit are to half of sequence.","
noIPR
unintegrated
unintegrated
PS51257\"[1-17]TPROKAR_LIPOPROTEIN


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Mon Jan 8 16:37:51 2001","Mon Jan 8 16:37:51 2001","Mon Jan 8 16:37:51 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540668","","","","","","1","","","PG0906" "PG0810","971813","971325","489","ATGGCTTCCGTGCATAAGCAATCTTTCCCACCCATCGAAGACGGGCATCTGGAAATACTCATATTGGGTAGTCTGCCCGGTGATGAATCTATCCGCAGAGGGCAATACTATGCTCATCCCCGCAACCGCTTTTGGCCTTTGATGGCAAAACTGCTGGGAAAACCCCTACCCGATGACTATGCAGAACGAACCGAGATATTGCTTTCGGCACATATCGGTCTGTGGGATGTTGCCCATTCGGCTATTCGCAAGGGAAGTGCGGATATTCAGATCTGTGACGAAGAGCCCAATGACATACGCTCTCTGATCGAACGAAACCCACGATTGCACACGATTGCATTCAACGGAAGAAAAGCAGAAGCAATGTTCAGAAAGCATTTCCCCGAAACTCTTGCCATTCGTTGCCTGCTCATGCCGAGTACAAGCCCTGCCAATGCCGGAAAGACCTTAGACCTCTTAGTGAAAGATTGGAATAGGATCTTTTCTCTT","8.20","2.58","18473","MASVHKQSFPPIEDGHLEILILGSLPGDESIRRGQYYAHPRNRFWPLMAKLLGKPLPDDYAERTEILLSAHIGLWDVAHSAIRKGSADIQICDEEPNDIRSLIERNPRLHTIAFNGRKAEAMFRKHFPETLAIRCLLMPSTSPANAGKTLDLLVKDWNRIFSL","971813 971325","TIGR ID: PG0908","conserved hypothetical protein","Cytoplasm","Two significant hits in gapped BLAST; e.g. residues 9-146 are 45% similar to gb|AAF18283.1| unknown; orf1 of Zymomonas mobilis, residues 9-160 are 36% similar to emb|CAB73508.1| hypothetical protein Cj1254 of Campylobacter jejuni,","
InterPro
IPR005122
Family
Uracil-DNA glycosylase superfamily
PF03167\"[10-162]TUDG
InterPro
IPR015637
Family
DNA glycosylase, G/T mismatch
PTHR12159\"[6-48]TDNA_glycosylase_G/T-mismatch
noIPR
unintegrated
unintegrated
G3DSA:3.40.470.10\"[8-160]TG3DSA:3.40.470.10
SSF52141\"[8-163]TUDNA_glycsylseSF


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Mon Jan 8 16:39:47 2001","Mon Jan 8 16:39:47 2001","Mon Jan 8 16:39:47 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540669","","","","","","1","","","PG0908" "PG0811","973131","971833","1299","ATGGATACATCAACCCAACAACGAATTATCAGTCTCATTAAGAAAGAAGTAGTTCCGGCCACAGGCTGTACCGAGCCGGTTGCCGTTGCTCTTGCTGCTGCTCAAGCTGCTTCGCTCATGGAGCAACGACCGGACCATGTAGAGGTACTGCTCAGCCCCAATATACTCAAGAATGCCATGGGCGTAGGCATCCCCGGAACGGGAATGATCGGACTACCGATAGCCATAGCTCTTGGAATCGTCGTAGCAGACCCGACCAAACAACTCAAAGTGCTCGATGGGATTGCACCGGAACAGCTTGAGGAGGCCAAGAAAATCGTCGACGGTAAGATTATACAAGTAGCAGTCAAACAGGGTGATATAGACAAATTGTATATCGAAATCAATATGTCGGCCGGTTCCGAATCGGCATCAACGATCATTGAAAAAATCCATACCAATATCATCTATGCTGCACACAATGGCCAAGTCGTCATCGATGGCCGGCATGATGCAGCAGACAAGAGCGAGAGTGCATCATCCGAGTCGGAGGAGGAGATCGCACTATCCTTCGAGATGGTATACGACTTTGCCATGAATACACCCACGGAAGAGATCGAATTCATCTTGGAAGCTGCTCGCCTCAATCGACATGCCAGCGAAGTATCCATGAAGGGCAATTACGGCCATGCCGTGGGACGAATGATACAAGGTTCTTTGGGACGCCGCTATCTTGGCGACAGCTCTCTTACTCGCATGCTTACTTATACAAGCTCGGCATGCGATGCACGTATGGATGGTGCTCCGGTAACGGTCATGAGCAATTCCGGCAGTGGTAATCAAGGTATTACGGCCACATTGCCCGTACTTTCATTTGCTGAAGACGAGCAGGCCGATCATGAAAGAACGGTAAGGGCTTTGGTCTTGAGCAATCTTATGGTGATCTACATCAAGCAGAAGCTCGGCCGTCTGTCAGCTCTCTGTGGCTGTGTAGTGGCTGCAACGGGATCAAGCTGCGGACTCTGTTATCTGATGGGAGGCACTAAAGAGCAAATCGGATTTGCCATCAAAAACATGATCGGCAATATCACCGGCATGCTTTGCGATGGAGCCAAGCCGAGCTGTAGCATGAAAGTATCCAGCGGAGTCAGCTCCGCCATGTTCTCTGCACTGCTGGCCATGGAGAAAAAGGTAGTGACCAGCAACGAGGGGATCGTGGACGATGATGTAGACCAAAGCATCGACAACCTCACAAGCATAGGCCGGGATGGCATGAACGCCACCGATACCCTTGTGCTCAACATCATGACCAGCAAAAAG","4.90","-12.66","45814","MDTSTQQRIISLIKKEVVPATGCTEPVAVALAAAQAASLMEQRPDHVEVLLSPNILKNAMGVGIPGTGMIGLPIAIALGIVVADPTKQLKVLDGIAPEQLEEAKKIVDGKIIQVAVKQGDIDKLYIEINMSAGSESASTIIEKIHTNIIYAAHNGQVVIDGRHDAADKSESASSESEEEIALSFEMVYDFAMNTPTEEIEFILEAARLNRHASEVSMKGNYGHAVGRMIQGSLGRRYLGDSSLTRMLTYTSSACDARMDGAPVTVMSNSGSGNQGITATLPVLSFAEDEQADHERTVRALVLSNLMVIYIKQKLGRLSALCGCVVAATGSSCGLCYLMGGTKEQIGFAIKNMIGNITGMLCDGAKPSCSMKVSSGVSSAMFSALLAMEKKVVTSNEGIVDDDVDQSIDNLTSIGRDGMNATDTLVLNIMTSKK","973131 971833","TIGR ID: PG0909","conserved hypothetical protein","Cytoplasm","One significant hit in gapped BLAST, e.g.; residues 7-432 are 36% similar to 45.5 kda hypothetical protein in exur-tdcc intergenic region of E.coli.This sequence is similar to BT2080.","
InterPro
IPR010469
Family
Protein of unknown function DUF1063
PIRSF006054\"[3-433]TUCP006054
PF06354\"[5-433]TDUF1063
InterPro
IPR013032
Domain
EGF-like region
PS00022\"[321-332]?EGF_1


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 250-432 are 49% similar to a (PROTEIN MJ1025 EXUR-TDCC INTERGENIC) protein domain (PD035442) which is seen in YHAM_ECOLI.Residues 44-81 are 52% similar to a (PROTEIN TRANSMEMBRANE EXUR-TDCC) protein domain (PD015705) which is seen in YHAN_HAEIN.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Mon Jan 8 16:48:34 2001","Wed Dec 10 14:30:05 2003","Mon Jan 8 16:48:34 2001","","Wed Dec 10 14:30:05 2003","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Dec 10 14:30:05 2003","No significant hits to the PDB database (E-value < E-10).","","","Residues 5 to 433 (E-value = 6e-151) place PG0811 in the DUF1063 family which is described as Protein of unknown function (DUF1063) (PF06354)","","34540670","","","","","","1","","","PG0909" "PG0812","973758","973189","570","ATGAAAAGAGTCTTTTGTCCGAAATGTGACGGTGCTATCACGATTAGCCGTGAAACTCTCTCTCAGGCATCGCCAAACGGTTCTTTGTCATTGCTCTGTCCGCATTGTTGTCATCAGTTGCGCATTCGGCTGGTAAGCAAATCCGACAACTCGCACAATCACAAAACAGAGCAAGAGGAACAAGAATTGGCACAGGAGCTCGACCGAAGCCGCGGATACATAGTCGTATTGGAAAATATATTCGGATATCGGCAGGAATTTGCGCTCAGAGAAGGAGACAACGGGATAGGACGTCGCAACAAAGACTCGGTTGTGGACATTGCAGTATTGACCGGTGATCCAAGCATGGGACGACACCACTGCATACTTCGAGTGACCCCGAAAAAAGACGGATCTTTTCTTTATTCGATTGCCGATGACGATAGTCTTGTAGGTACTTTTGTCGGAGGACGTCTTCTGGACAAAAAAGAATGGTGCAGACTGAACGATGGCGATGTGATTACGATGGGGGCTACCAGTGCCATATTGTACACATCGGATCACAAAGACACCGAATCCGAGGAGAAGAAT","6.40","-2.64","21224","MKRVFCPKCDGAITISRETLSQASPNGSLSLLCPHCCHQLRIRLVSKSDNSHNHKTEQEEQELAQELDRSRGYIVVLENIFGYRQEFALREGDNGIGRRNKDSVVDIAVLTGDPSMGRHHCILRVTPKKDGSFLYSIADDDSLVGTFVGGRLLDKKEWCRLNDGDVITMGATSAILYTSDHKDTESEEKN","973842 973189","TIGR ID: PG0910","hypothetical protein","Cytoplasm","No significant hits in gapped BLAST. ","
InterPro
IPR000253
Domain
Forkhead-associated
PF00498\"[94-170]TFHA
SM00240\"[93-153]TFHA
PS50006\"[94-153]TFHA_DOMAIN
InterPro
IPR008984
Domain
SMAD/FHA
SSF49879\"[60-186]TSMAD_FHA
noIPR
unintegrated
unintegrated
G3DSA:2.60.200.20\"[60-186]TG3DSA:2.60.200.20


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 14:02:03 MDT 2001","","Thu Jun 14 14:02:03 MDT 2001","Thu Jun 14 14:02:03 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 14:02:03 MDT 2001","Thu Jun 14 14:02:03 MDT 2001","","","Mon Jan 8 16:50:03 2001","Mon Jun 18 10:33:33 MDT 2001","Mon Jan 8 16:50:03 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Jun 14 14:02:03 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 94 to 170 (E-value = 6.4e-08) place PG0812 in the FHA family which is described as FHA domain (PF00498)","Mon Jun 18 10:26:35 MDT 2001","34540671","","","","","","1","","","PG0910" "PG0813","975448","973886","1563","ATGGGAACACATATAAAAAGCCGTACAGCCAATAGCCTGCAAAATACAAAGGTTTCTTTGTTTTTTTATCTTCTTATACTGGTAACTACTTTTTTTTCTCGTAAAGTTTTTATCAATTCTCTTGGCACAGAGATACTGGGCTTGAATACGACGATTACCAATTTATTAGGGCTTTTGAACTTGTCAGAATTAGGAATCGGAACTGCCGTATCCTTTGCATTGTTCAAGCCCCTGCTGGACGGCAATCGGAAGAATATCAGCGAAATAGTATCTGTTCAGGGATGGTTATACAGGAATATAGCTCTTTTGATAATTATCGTGGGGGCTATTCTTATGTTTTTCTTCCCTTGGATATTTCAAAAAACAGATCTGCCTTTATGGTATGCGTATTCCACTTATTTAGTCTTCCTGACTTCTTCTCTTTTGGGTTATTTTATCAATTACAGGCAGATCATTCTATCTGCTGATCAAAAACAATATAAGATAACGTATATAACCAAAGGTCTGACTTTTCTGAAACTTACTATCCAGATCATTCTACTCTATTTTTCTATTGGGGGATATAAAGGCTGGTTGTTGGTAGAATTGGTATTCGCCTTTGCAACAGCATTTCTTCTGGAATATTCTGTCCGAAAAACTTATCCTTGGCTCAAAACCTCCTGTTATGTCGGGAAAAGAGTATATAAGGAGTATGGAGAAATCCTGACAAAGATCAAGCAGCTCTTTTTCCACAAGGTTGCGGGCTATGTGCTCAATCAGACCTCGCCTATAATCATCTATGCTTATACCACCTTAACGCTCGTTGCTATCTATGGCAACTATATGCTTATAGTAGCAGGGGTAATTTCCCTTTTGGTCGCAATTTTCAGTGGTATCATACCAACTTTAGGAAATCTCATTGCCGAAGGAAAAAGAAAATCGATTCTAAAAATTTTCGGAGAGTATTTTGCCTGCCGAATGCTTATAGCCGGAATTGCGACCTACTGTTTATGGATCGGAGGAAACGGTTTTATGGTCTTATGGATGGGCTCCGAGTATCTTTTGGAAAAACTTCCTTTCGTCTTGATAGTCGGTATTACTTTCGCCGGTATGACCCGTGTCAGTGATGATTTCCTGGCTGCTTATGGTCTTTTCAGAGATATATGGGCTCCCATTTCTGAGGCCGCTCTCAATTTGGGTCTATCTATTTTATTGGGACATTTCTTTTCTTTATCGGGTATTTTATCCGGAGTCCTTATCAGTCTGATACTCGTAGTTCATATTTGGAAGCCCTACTTCTTGTGCAAAAACGGCTTGTTGATCCCTGTCAGCAAATATTATCTGAAATACATACTGTACTGCTCTATTACCCTCTTATCAGGATTTGCTACTTATTGGTTGCTTGGTGCAGCTAATCGAGATGAAGCGTTTTCTTTCACCCAATGGGCTATATTTTTGTTCAAACACATGGTTTTGTTCTCTCTTATCTCATACTCTATCACTTTTCTACTGGACAAAGGCATGAAGGATTTTTCCCAACGCGTATTATACATAATCAAGGAAAAGCTAATCAAGAAAAACGAA","10.40","22.96","59115","MGTHIKSRTANSLQNTKVSLFFYLLILVTTFFSRKVFINSLGTEILGLNTTITNLLGLLNLSELGIGTAVSFALFKPLLDGNRKNISEIVSVQGWLYRNIALLIIIVGAILMFFFPWIFQKTDLPLWYAYSTYLVFLTSSLLGYFINYRQIILSADQKQYKITYITKGLTFLKLTIQIILLYFSIGGYKGWLLVELVFAFATAFLLEYSVRKTYPWLKTSCYVGKRVYKEYGEILTKIKQLFFHKVAGYVLNQTSPIIIYAYTTLTLVAIYGNYMLIVAGVISLLVAIFSGIIPTLGNLIAEGKRKSILKIFGEYFACRMLIAGIATYCLWIGGNGFMVLWMGSEYLLEKLPFVLIVGITFAGMTRVSDDFLAAYGLFRDIWAPISEAALNLGLSILLGHFFSLSGILSGVLISLILVVHIWKPYFLCKNGLLIPVSKYYLKYILYCSITLLSGFATYWLLGAANRDEAFSFTQWAIFLFKHMVLFSLISYSITFLLDKGMKDFSQRVLYIIKEKLIKKNE","975448 973886","TIGR ID: PG0912","conserved hypothetical protein","Inner membrane, Cytoplasm","Three significant hits in gapped BLAST; e.g. residues 7-512 are 37% similar to >gb|AAD40712.1|AF048749_8 putative flippase of Bacteroides fragilis, residues 16-432 are 25% similar to emb|CAA43076.1| hypothetical protein with 12 predicted transmembrane segments which possibly functions in export of O-antigen of Salmonella enterica, residues 8-512 are 21% similar to gb|AAB49392.1| putative 12 transmembrane segment protein of Salmonella enterica.This sequence is similar to BT1354.","
noIPR
unintegrated
unintegrated
signalp\"[1-30]?signal-peptide
tmhmm\"[21-41]?\"[55-75]?\"[96-118]?\"[128-148]?\"[169-188]?\"[194-209]?\"[256-274]?\"[280-300]?\"[321-341]?\"[347-367]?\"[382-402]?\"[408-428]?\"[443-463]?\"[477-497]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 17-331 are 23% similar to a (PROTEIN PUTATIVE O-ANTIGEN TRANSPORTER) protein domain (PD043236) which is seen in Q54126_SALTY.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Mon Jan 8 17:11:15 2001","Thu Dec 4 13:29:36 2003","Mon Jan 8 17:11:15 2001","","Tue Apr 3 17:25:08 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG0813 shares 47% identity with PG0102, a possible flippase.","Tue Apr 3 17:25:08 MDT 2001","Tue Apr 3 17:25:08 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Apr 3 17:25:08 MDT 2001","34540672","","","","","","1","","","PG0912" "PG0814","975689","975480","210","ATGGTCAGTGAGTCTTTTGAACTACAACGAAGTAATGATTTAGGGCTGACTCCGGAGTTGGAATCAGCCCTTATCCCCGACCCAAAGAAATCGGATGAAAACCAAACATTCAGAACACCCCTCGAAACTTTATATCCTAAACGTATCAAACCTTTGCACTTCAGGGCGGAATGTACGATACAGCCATTTTTAGCACGCGCCAATACGGCT","5.90","-0.82","7985","MVSESFELQRSNDLGLTPELESALIPDPKKSDENQTFRTPLETLYPKRIKPLHFRAECTIQPFLARANTA","975779 975480","MD Continuation of PG813.TIGR ID: PG0913","hypothetical protein","Cytoplasm","No significant hits in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 14:02:47 MDT 2001","","Thu Jun 14 14:02:47 MDT 2001","Thu Jun 14 14:02:47 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 14:02:47 MDT 2001","Thu Jun 14 14:02:47 MDT 2001","","Mon Jun 18 10:34:39 MDT 2001","Tue Jan 9 11:27:19 2001","Tue Jan 9 11:27:19 2001","Tue Jan 9 11:27:19 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 14 14:37:33 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jun 18 10:34:39 MDT 2001","","","","","","","1","","","PG0913" "PG0815","976509","975799","711","ATGAACAAAAAGAACATTATCATCGGATCAATCATCGCAGTACTCGCCATACTGCTTATCACCTCTTTCTTGTGGAATAGAGATGTACGTAATAAATTGCGGATCGCTCAGCACAATGTGGAAGCCGCATTGGACTCCATTCGTTACCTCAAAGATGCCAATGGAAATCTCTATGCGGAAAAGAAATCGTTCATCGCCACTATCAGCGAATTGAAAGAACTGAACACTGAGATGTACGAGAATATCCAGTCTTTGCAAAAGAAACTGCAAAAGAAAATTCTGGCAGGCTCCGATATAGGCGTAGTCGTAGTGGACACCATTTATCAGGACAAGATCATCGAATACACGTTAGACAGTCTGGTAAATATCCCCTTCTCCGATCAGACCATCAATGCCAACAGCCTCGTTCGCATACATCGGGACAATATCCGTCTGCAACAATTCACATACAACTTGGACATTCCGCTCGAAGTCTATTTCACAAAAGACTATCAGATCATCGCTCGCAGTAAGAACGAAAATGTGACATTCAGCAAGCTCAACAGCTTTATCGACCCCTCCGTTACGAAGTATCGCAATCGCAAAAGATGGGGATTCGGTATTCAGGCCGGTGTAGGCTTCATGCCGGGCTACGACCTCGTGAGGAAAGACCTTGTACCTGCCGTAGGCCCTTATCTCGGCGTAGGTATCAGCTATCACATCCTACAGTGG","10.20","7.72","27146","MNKKNIIIGSIIAVLAILLITSFLWNRDVRNKLRIAQHNVEAALDSIRYLKDANGNLYAEKKSFIATISELKELNTEMYENIQSLQKKLQKKILAGSDIGVVVVDTIYQDKIIEYTLDSLVNIPFSDQTINANSLVRIHRDNIRLQQFTYNLDIPLEVYFTKDYQIIARSKNENVTFSKLNSFIDPSVTKYRNRKRWGFGIQAGVGFMPGYDLVRKDLVPAVGPYLGVGISYHILQW","976509 975799","TIGR ID: PG0914","hypothetical protein","Outer membrane, Inner membrane, Cytoplasm","This sequence corresponds to gi:34396987 in Genbank.","
noIPR
unintegrated
unintegrated
signalp\"[1-24]?signal-peptide
tmhmm\"[5-25]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Jan 9 11:28:22 2001","Fri Mar 4 10:57:16 2005","Tue Jan 9 11:28:22 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Mar 4 10:57:16 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540673","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Fri Mar 4 10:57:16 2005","","1","","","PG0914" "PG0816","976727","977116","390","ATGAAAAATAATATGAAAAACAACATTTTGTTAAATAAATTTCTTCTTTACAAGTCCGAAGGCTTGGCTTATGGTATTACCGAAATGTTTAGCCGGAATTTGGCCGAATTATTATCCGATAAGATCATGATTGTCTATCCTGATTTCGATCGGGATAGCTTCATCCAAAGTATTGAAAATCATGTCGTTGGGAAAACATATACCCGGCGAATCCCCATCTTCGCCTCACTGTTGAAAGAGCATCTTCCGGAAGATTACGAGAGGGCTTTGTCCGTTTTGACAGGTATTTGGGGAGAAGAAAACCCCAACGAAACGGGAATGTTTAACCATTCTATTGGATCATGCCTATCGGGAAATCTACCCAAGATTATAGTACACATTGTGAGTTTA","6.50","-1.09","14817","MKNNMKNNILLNKFLLYKSEGLAYGITEMFSRNLAELLSDKIMIVYPDFDRDSFIQSIENHVVGKTYTRRIPIFASLLKEHLPEDYERALSVLTGIWGEENPNETGMFNHSIGSCLSGNLPKIIVHIVSL","976724 977116","TIGR ID: PG0915","conserved hypothetical protein","Cytoplasm","One weak hit in gapped BLAST to emb|CAB40602.1| DNA alkylation repair enzyme of Bacillus cereus with Evalue of 0.001.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 14:03:20 MDT 2001","","Thu Jun 14 14:03:20 MDT 2001","Thu Jun 14 14:03:20 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 14:03:20 MDT 2001","Thu Jun 14 14:03:20 MDT 2001","","","Tue Jan 9 11:30:10 2001","Mon Jun 18 10:38:21 MDT 2001","Tue Jan 9 11:30:10 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Jun 14 14:03:20 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jun 18 10:36:36 MDT 2001","34540674","","","","","","1","","","PG0915" "PG0817","978189","977797","393","ATGCCGAAGAAAACGACCTTCCTGCAACTAATTAAATATGGTATCGTGGGCGTATCCAATACGCTCATTTCCATGATTGTAATCTTCCTGCTACTCAAAATCGCCGGTATGAAAGACGGTCCGGCCAATCTGATCGGTTATATAGCAGGACTCATCAACAGCTTCATTTGGAATCGTAAATGGACATTCCGGAGCCGGACCTCTTGGAGGCAAACATTCGTACCATTCATCCTGATGTTCGTAATATGCTATGCACTCCAATACGGACTTTTGATGTGGCTCAACGAATACTCCACCTCCTACGACAAGTATTACAACCACCTGATAGGAATGGCCTTTTTCACCATTATCAATTTCCTTGCCAATAAGTTCATTACATTCGGCAAAGAACGG","10.80","10.17","15320","MPKKTTFLQLIKYGIVGVSNTLISMIVIFLLLKIAGMKDGPANLIGYIAGLINSFIWNRKWTFRSRTSWRQTFVPFILMFVICYALQYGLLMWLNEYSTSYDKYYNHLIGMAFFTIINFLANKFITFGKER","978189 977797","TIGR ID: PG0917","conserved hypothetical protein","Inner membrane, Cytoplasm","Four significant hits in gapped BLAST; e.g. residues 12-128 are 30% similar to emb|CAB13700.1| yngA of Bacillus subtilis, residues 11-127 are 26% similar to emb|CAB02468.1| hypothetical protein Rv3789 of Mycobacterium tuberculosis, residues 7-122 are 26% similar to dbj|BAA18430.1| dolichyl-phosphate-mannose synthase of Synechocystis sp.","
InterPro
IPR007267
Family
GtrA-like protein
PF04138\"[12-127]TGtrA


","BeTs to 4 clades of COG2246COG name: Uncharacterized membrane proteinFunctional Class: SThe phylogenetic pattern of COG2246 is a--k---c-B-----------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 11-127 are 26% similar to a (HYPOTHETICAL 13.4 KD PROTEIN) protein domain (PD031503) which is seen in Y1I9_MYCTU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Jan 9 11:34:26 2001","Tue Jan 9 11:34:26 2001","Tue Jan 9 11:34:26 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","Residues 12 to 127 (E-value = 5.1e-28) place PG0817 in the GtrA family which is described as GtrA-like protein (PF04138)","","34540675","","","","","","1","","","PG0917" "PG0818","978910","978158","753","ATGGAAGAAGAAAGACAGCAATCACCGCTCGAAGGCCTGTCGGAAGAAGCTCTCAAACACGTCCATCAGCTTGATGAGCCTATTCCGATAGAATTGCAAGCCTCTTATTTCCGTTTGTCGGCAGAGATGCGCAGACGTGGCATACAGCTTAGCGAGAACGAAGTCCAAGATGCAGAGCAGCTATTGTTCGATCCCGTACTTTCGGACGACATCAAGAAAATGACTCTGCTGCGCCTTGCCATCACTGGCAACATCACTGTATTCAGGATTATCGAACGCTATCTCGAATCCGCTCCCGACTCGATGAGGCCTTGGGCTTTGATGGCCCAGCTGGAAGCTCGCATAGGTATCCTATCCGATCTGGTAGACGAGAAGCAACTGGTCATAACCAGTGGTCTGGGCGGCCACGATGGCATGATGCGCTTCATGGCCTTTCTCCATACGGACAAACTGCAAGACTTCGAACACTATCAGGAAGAACTGATAGAGAAGGAGCTGCTATACCGTATCGGCAAAGCATCCGGTGAAGTAGAACGGCTGGAGATGCACAACAACTATTTGCTCCTGACCTTCCTCGTCCCGATCAACTATGATCTGCGAAACTTCTTCTCGTCCTTCATCGCCGAGTGCAATCAGTTCGGCCACTTTCTGTCCACCACGTTTATCATCACCAATACCCAACTGCTTACCCCGCAGGGCGCCCAAGTAGCCCTGAAGAAATATGCCGAAGAAAACGACCTTCCTGCAACTAAT","4.60","-15.34","28893","MEEERQQSPLEGLSEEALKHVHQLDEPIPIELQASYFRLSAEMRRRGIQLSENEVQDAEQLLFDPVLSDDIKKMTLLRLAITGNITVFRIIERYLESAPDSMRPWALMAQLEARIGILSDLVDEKQLVITSGLGGHDGMMRFMAFLHTDKLQDFEHYQEELIEKELLYRIGKASGEVERLEMHNNYLLLTFLVPINYDLRNFFSSFIAECNQFGHFLSTTFIITNTQLLTPQGAQVALKKYAEENDLPATN","978910 978158","TIGR ID: PG0918","hypothetical protein","Cytoplasm","This sequence corresponds to gi:34396990 in Genbank.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Jan 9 13:14:34 2001","Fri Mar 4 10:59:54 2005","Tue Jan 9 13:14:34 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Mar 4 10:59:54 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540676","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Fri Mar 4 10:59:54 2005","","1","","","PG0918" "PG0819","980426","979080","1347","ATGAAAATTCTTCTTCGCAACGCACTTATCACCAACGAGGGAAAAACCTTCCCCGGTTCGGTGATGATTGATGGCGCATTTATCTCCCGTATTATCGAAGGAGAGCTACCCGCGGATGACAATCTCTCCGCCGATGAAGTCATAGAGTGTAGCGGTCTGAGGCTATTCCCCGGATGTATAGACGACCAAGTTCATTTCCGCGAGCCGGGACTGACGCACAAAGCTACCATCGCCTCTGAAAGCCGGGCAGCAGTAGCGGGCGGAGTCACTTCGTTTATGGATATGCCCAATACGAATCCTCCTACCACAATGTGGGAGCGACTGCTGGAGAAAAGGCAGATCGGTGCAGACACGGCATGGGCCAACTACGGCTTCTTCTTCGGTGGCACGAATGACAACATCGATGAGATCAAACGGGTGGACAAGCATCTGGTACCCGGTCTGAAGCTATTCCTCGGTTCATCTACCGGCAATATGCTTGTGGACAATAAGGAAACGCTGGAGAAAATATTCGGAGAATGCGACCTGCTCATCGCCACGCACTGTGAAAAAGAGGAAATCATCCGAGCCAACAAAGAGCACTACAAAGCCAAATACGGGAATGATTTGGACATACATTTCCATCCTCTCATCCGTAGTGAAGAGGCTTGTTACCGCTCATCGGCAGAAGCGGTGGAGCTGGCCGAGAGGATGAATGCCCGTCTGCACATCCTGCATCTATCGACAGAGAAAGAACTGAGTCTCTTCCGCAACGATATACCCACAGCACAAAAGCGAATCACGTCGGAAGTCTGTGTACACCATTTGTGGTTCAGCGATACCGACTACGGCAGACTTGGCAACAGGATCAAATGGAATCCGGCCATCAAAAAAGAATCGGATAGGGAAGCCCTTCGTGCAGCCGTGCGCAATGGACGTATCGATATTATAGCTACGGATCATGCCCCGCATCTGCTAAGAGAAAAAGAAGGCAGTTGCTTGCAGGCTGCATCCGGCGGGCCACTCGTGCAGCACTCCTTGCTCGCCTTGCTCGAACTCTGCAATCAAGGCATATTCAGCATCGAAGAAATAGTAAGCAAAACGGCTCACATACCGGCCACTCTCTTCGCCATAGAGAAGAGAGGATACATTCGTCCGGGCTACTATGCCGATCTGGTGCTTGTGGATCCGTCATCTCCTCACACCGTATCTGCGGATAATATACTTAGCCTCTGCGGATGGTCTCCTTTCGAAGGCTTCACCTTCAGTCACAGTGTCGCATACACTTTTGTCAATGGATGCTTGGCATATGCCAAGGGGAGATTAGCCGAAAGCAGACCCACGGTACATCCGCTATTCTTCAACAGA","6.40","-6.10","50005","MKILLRNALITNEGKTFPGSVMIDGAFISRIIEGELPADDNLSADEVIECSGLRLFPGCIDDQVHFREPGLTHKATIASESRAAVAGGVTSFMDMPNTNPPTTMWERLLEKRQIGADTAWANYGFFFGGTNDNIDEIKRVDKHLVPGLKLFLGSSTGNMLVDNKETLEKIFGECDLLIATHCEKEEIIRANKEHYKAKYGNDLDIHFHPLIRSEEACYRSSAEAVELAERMNARLHILHLSTEKELSLFRNDIPTAQKRITSEVCVHHLWFSDTDYGRLGNRIKWNPAIKKESDREALRAAVRNGRIDIIATDHAPHLLREKEGSCLQAASGGPLVQHSLLALLELCNQGIFSIEEIVSKTAHIPATLFAIEKRGYIRPGYYADLVLVDPSSPHTVSADNILSLCGWSPFEGFTFSHSVAYTFVNGCLAYAKGRLAESRPTVHPLFFNR","980426 979080","TIGR ID: PG0919","dihydroorotase","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 4-435 are 52% similar to gb|AAF83798.1|AE003937_2 dihydroorotase of Xylella fastidiosa, residues 3-449 are 50% similar to gb|AAG08926.1|AE004966_8 probable dihydroorotase of Pseudomonas aeruginosa, residues 21-412 are 35% similar to >gb|AAG20592.1| dihydroorotase; PyrC of Halobacterium sp. NRC-1.This sequence corresponds to BT0250.","
InterPro
IPR002195
Domain
Dihydroorotase
PS00483\"[311-322]TDIHYDROOROTASE_2
InterPro
IPR005847
Domain
Dihydroorotase region
PD000518\"[380-438]TDHOase
InterPro
IPR011059
Domain
Metal-dependent hydrolase, composite
SSF51338\"[1-428]TMetalo_hydrolase
InterPro
IPR013108
Domain
Amidohydrolase 3
PF07969\"[352-387]TAmidohydro_3
noIPR
unintegrated
unintegrated
G3DSA:3.20.20.140\"[58-416]TG3DSA:3.20.20.140
PTHR11647\"[47-435]TPTHR11647
PTHR11647:SF5\"[47-435]TPTHR11647:SF5
SSF51556\"[58-377]TSSF51556


","BeTs to 11 clades of COG0044COG name: DihydroorotaseFunctional Class: FThe phylogenetic pattern of COG0044 is amtkYqvcEBr-uj-------Number of proteins in this genome belonging to this COG is 1","***** IPB002195 (Dihydroorotase) with a combined E-value of 9.1e-24. IPB002195A 57-68 IPB002195B 79-104 IPB002195C 260-272 IPB002195D 307-318","Residues 149-426 are 29% similar to a (PROTEIN HYDROLASE DIHYDROPYRIMIDINASE DIHYDROOROTASE) protein domain (PD001085) which is seen in PYRC_PYRHO.Residues 9-101 are 41% similar to a (PROTEIN HYDROLASE DIHYDROPYRIMIDINASE) protein domain (PD000518) which is seen in PYRC_AQUAE.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Jan 9 13:23:06 2001","Tue Dec 2 15:56:43 2003","Tue Jan 9 13:23:06 2001","Fri May 4 12:40:22 MDT 2001","Fri May 4 12:40:22 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri May 4 12:40:22 MDT 2001","-48% similar to PDB:1XRF The Crystal Structure of a Novel, Latent Dihydroorotase from Aquifex aeolicus at 1.7 A resolution (E_value = 4.5E_36);-48% similar to PDB:1XRT The Crystal Structure of a Novel, Latent Dihydroorotase from Aquifex Aeolicus at 1.7 A Resolution (E_value = 4.5E_36);-47% similar to PDB:1GKR L-HYDANTOINASE (DIHYDROPYRIMIDINASE) FROM ARTHROBACTER AURESCENS (E_value = 1.3E_35);-45% similar to PDB:1YNY Molecular Structure of D-Hydantoinase from a Bacillus sp. AR9: Evidence for mercury inhibition (E_value = 1.1E_23);-46% similar to PDB:1NFG Structure of D-hydantoinase (E_value = 2.0E_23);","","","Residues 54 to 389 (E-value = 1.9e-05) place PG0819 in the Amidohydro_1 family which is described as Amidohydrolase family (PF01979)","Fri May 4 12:40:22 MDT 2001","34540677","","","","","","1","","","PG0919" "PG0820","981117","980440","678","ATGATAGAAACGGTCTTCGCTCTACCCAAAACTTTCGATATTCTGATAATCGACGATGGATCGCCCGACGGAACGGCTGCGATCGTCAAAGAGAAACAGGCCATCTATCCCGAAAGACTTCATCTGGTCGAGAGACAAGGCAAATTGGGTCTGGGTACGGCCTACATAGCCGGATTCAAATGGAGCATCGCGCGAGGGTATGACTATATATTCGAGATGGACTGCGATTTCAGCCACCCGGTAGACAAGTTGATCGATCTATACAATGCCTGCGCCGGAGGAGAAGCCGATGTAGCGATCGGCTCGCGCTATGTATCGGGCGGAGGCGTCAAGGACTGGCCTAAAAGTCGCGTATGGATGAGCTACTACGCATCCGTATATGTGCGTCTCGTGACCTTGATGAATATATGCGACACGACTGCCGGATTTGTTTGCTACCGCCGCGAAGTTCTTGAAACCATTGATCTTGATTCGGTACATTTCAAGGGCTACGCTTTCCAAATCGAGATGAAATACACGGCCTATTGTCTCGGATTTCGCCTGAAAGAGATACCCATCACTTTCGTCAATCGTGTTTTGGGAACGTCGAAAATGAACACTTCTATTTTCGGTGAAGCTTTTACGGGCGTGATCAAGCTACGCTACTGGCACTTATTCAAAGGATTTCCCAAAAGAAAA","8.30","3.72","25618","MIETVFALPKTFDILIIDDGSPDGTAAIVKEKQAIYPERLHLVERQGKLGLGTAYIAGFKWSIARGYDYIFEMDCDFSHPVDKLIDLYNACAGGEADVAIGSRYVSGGGVKDWPKSRVWMSYYASVYVRLVTLMNICDTTAGFVCYRREVLETIDLDSVHFKGYAFQIEMKYTAYCLGFRLKEIPITFVNRVLGTSKMNTSIFGEAFTGVIKLRYWHLFKGFPKRK","981207 980440","From gi:11125576Ppm1 of M. smegmatis is involved in LAM biosynthesis.TIGR ID: PG0920","glycosyltransferase (possible polyprenol phosphate mannosyl transferase 1)","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 14-210 are 497% similar to emb|CAC15463.1| putative polyprenol phosphate mannosyl transferase 1 (Ppm1) of Mycobacterium smegmatis, residues 16-242 are 45% similar to AE007062,residues 14-212 are 47% similar to emb|CAA17265.1| hypothetical protein Rv2051c of Mycobacterium tuberculosis, residues 14-2126 are 48% similar to emb|CAB11300.1| hypothetical protein of Mycobacterium leprae.","
InterPro
IPR001173
Domain
Glycosyl transferase, family 2
PF00535\"[1-155]TGlycos_transf_2
noIPR
unintegrated
unintegrated
G3DSA:3.90.550.10\"[12-154]TG3DSA:3.90.550.10
PTHR10859\"[1-207]TPTHR10859
SSF53448\"[12-218]TSSF53448


","BeTs to 13 clades of COG0463COG name: Glycosyltransferases involved in cell wall biogenesisFunctional Class: MThe phylogenetic pattern of COG0463 is AMTKYQVCEBRHujGPo---XNumber of proteins in this genome belonging to this COG is 8","No significant hit to the Blocks database.","Residues 58-197 are 49% similar to a (PROTEIN TRANSFERASE GLYCOSYLTRANSFERASE) protein domain (PD001307) which is seen in O53493_MYCTU.","","Thu Jun 14 14:04:11 MDT 2001","","Thu Jun 14 14:04:11 MDT 2001","Thu Jun 14 14:04:11 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 14:04:11 MDT 2001","Thu Jun 14 14:04:11 MDT 2001","","Mon Jun 18 10:42:13 MDT 2001","Tue Jun 12 11:49:15 MDT 2001","Mon Jun 18 10:47:41 MDT 2001","Tue Jan 9 13:30:34 2001","","Mon Jun 18 10:42:13 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 11-220 are 25% similar to PG0285.","Mon Jun 18 10:43:34 MDT 2001","Wed Mar 14 14:42:25 MST 2001","-46% similar to PDB:1DMG CRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN L4 (E_value = );-40% similar to PDB:1AA6 REDUCED FORM OF FORMATE DEHYDROGENASE H FROM E. COLI (E_value = );-40% similar to PDB:1FDI OXIDIZED FORM OF FORMATE DEHYDROGENASE H FROM E. COLI COMPLEXED WITH THE INHIBITOR NITRITE (E_value = );-40% similar to PDB:1FDO OXIDIZED FORM OF FORMATE DEHYDROGENASE H FROM E. COLI (E_value = );-40% similar to PDB:2IV2 REINTERPRETATION OF REDUCED FORM OF FORMATE DEHYDROGENASE H FROM E. COLI (E_value = );","","","No significant hits to the Pfam 11.0 database","Mon Jun 18 10:42:13 MDT 2001","34540678","","","","","","1","","","PG0920" "PG0821","982543","981323","1221","GTGAACTTCCCTTTTTTCATAGCCCGCCGTTACTTGTTCTCCCGCAAAAGATTCAGTGCGGTCAATGTGGTTTCGCTCGTTTCAGCGATAGCTGTCTGCGTGGTCTCTTCGGCCTTGGTTTGTATCCTCTCTATTTTCAATGGGTACGAAGCTTTGATCATGACGCATTCGGCAGTAACGGATCCCCCTCTTATGATTCGTTCGGCAGACAATTCGCTGATAAAGGCAGATGATAAAACTCTGCTCACAGCTCTCGAAGCGGAAGGGATCGGTTCGTACAGCTTTATCCTCACCGGAGAAGGTCTTGTAAAGACGAAGTATCGACAGCAGGCTGTTTCTCTCATGGGTGTGGATGATCGCTATCCCCGCACTGTGAAGATAGACTCCATCGTCTTTGCAGGCACATTCGCTACGGATACGCTATCCGGAGCTACAGCTCTGAATGTCGGTGCAGCCATCGCAACAGAAATGCAGCTCGGTGCAGGCTTTGTAGAAGCTGTGGAGGTAATTGTTCCCCGTCGTATCGGGCTGATCAATCCACTTGTTCCGGCCGGTGCATTCAAGTCGCTCCAAGGACAAGTGGCCTCGGTATTTGCATCCGGCCTGCAACCCGAGGACAATTCCATCATCCTTTCCATAGACAGTCTGCGCAAACTGCTTGATTATTCGGATCATGAAGCAGAAGCCGTGGCCATACAGCTACGAACGGGTAGCGATGCAGAGCAAATAGCTCTCCGCCTAAAAGAGACTCTGGGGGACAGCTACCAAGTACTCGATTTGGCCGGACAGCATCCCGAAATCACTCACTTGATAGCGATGGAGAAGTGGATGAGCTACCTGATCCTCCTGTTTATCCTTGTACTTGCTACATTTAATATAGTCAGCAGCCTCTCCATGCTCCTTATAGAAAAGAAGGAAGACATCTATACGCTTCACTCAATGGGAGCAACATCCCAAACCATCTCTCGTATCTTTCGGATAGAAGGACTGCTCGTCTCCATGACGGGGGCAGCCATCGGCATTCTGATCGGTATAGGCTTGTGTGTGCTACAGCAGCAGTATGGCCTGATCACCCTGCAGATGGGCTTGGGATCGGTGGCATATCCGGTCAGAATGGATGTAGCAGATCTGGTCGTCATATTCCTGACGATATTCACACTCAGCTACTTAGCTGCCTATTATCCTGTCCACTACTTCATCAATCGCAGACTGAAAAATAGC","6.30","-2.69","44264","VNFPFFIARRYLFSRKRFSAVNVVSLVSAIAVCVVSSALVCILSIFNGYEALIMTHSAVTDPPLMIRSADNSLIKADDKTLLTALEAEGIGSYSFILTGEGLVKTKYRQQAVSLMGVDDRYPRTVKIDSIVFAGTFATDTLSGATALNVGAAIATEMQLGAGFVEAVEVIVPRRIGLINPLVPAGAFKSLQGQVASVFASGLQPEDNSIILSIDSLRKLLDYSDHEAEAVAIQLRTGSDAEQIALRLKETLGDSYQVLDLAGQHPEITHLIAMEKWMSYLILLFILVLATFNIVSSLSMLLIEKKEDIYTLHSMGATSQTISRIFRIEGLLVSMTGAAIGILIGIGLCVLQQQYGLITLQMGLGSVAYPVRMDVADLVVIFLTIFTLSYLAAYYPVHYFINRRLKNS","982543 981323","TIGR ID: PG0922","conserved hypothetical protein","Inner membrane, Cytoplasm","PG0523 is essentially identical to a previously sequenced P.gingivalis protein in GenBank, CAB40972.Numerous significant hits in gapped BLAST; e.g. residues 4-395 are 21% similar to gb|AAG06374.1|AE004724_3 conserved hypothetical protein of Pseudomonas aeruginosa, residues 100-395 are 24% similar to gb|AAG34708.1|AF320001_1 putative integral membrane protein of Acinetobacter sp., residues 2-395 are 21% similar to emb|CAA15135.1| unknown of Rickettsia prowazekii.","
InterPro
IPR003838
Domain
Protein of unknown function DUF214, permase predicted
PF02687\"[227-404]TFtsX
noIPR
unintegrated
unintegrated
signalp\"[1-37]?signal-peptide
tmhmm\"[21-43]?\"[276-296]?\"[330-350]?\"[377-397]?transmembrane_regions


","BeTs to 9 clades of COG0577COG name: Predicted permeaseFunctional Class: RThe phylogenetic pattern of COG0577 is AMt--QVcEBRHuj--OLinxNumber of proteins in this genome belonging to this COG is 8","***** BP03665 (PROTEIN TRANSMEMBRANE CONSERVED MEMBRA) with a combined E-value of 9.1e-13. BP03665B 284-338","Residues 273-395 are 23% similar to a (PROTEIN TRANSMEMBRANE MEMBRANE CONSERVED INTEGRAL CELL) protein domain (PD003665) which is seen in O25476_HELPY.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Jan 9 13:35:59 2001","Tue Jan 9 13:48:31 2001","Tue Jan 9 13:35:59 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","-43% similar to PDB:1JRO Crystal Structure of Xanthine Dehydrogenase from Rhodobacter capsulatus (E_value = );-43% similar to PDB:1JRP Crystal Structure of Xanthine Dehydrogenase inhibited by alloxanthine from Rhodobacter capsulatus (E_value = );","","","Residues 227 to 404 (E-value = 4.6e-24) place PG0821 in the FtsX family which is described as Predicted permease (PF02687)","","34540679","","","","","","1","","","PG0922" "PG0823","982906","982574","333","ATGGACAACAAACGACTAAGCAAAATAGAAAGACTGCTCCAGAAAGAACTCAGCGAGATATTCCTGCGGGATGCGAAATCCCTGCCGGGCGTAATAGTTTCGGTAACGAACGTACGTGTAAGTCCCGACCTCAGCATCGCACGTATACACCTGAGTATATTCCCATCCGAGAAGAGCAGCGAGATTCTTGAGAGCATCAAACACAATACAAAGACGATCCGTTATGACCTCGGGCAGCAAGTTCGTACCCAACTGCGCAAGATACCGGATTTGACATTCTACATAGATGACTCTCTGGATTATCTGGAGAATATAGACCGTTTGCTCAATCAA","9.10","1.47","12878","MDNKRLSKIERLLQKELSEIFLRDAKSLPGVIVSVTNVRVSPDLSIARIHLSIFPSEKSSEILESIKHNTKTIRYDLGQQVRTQLRKIPDLTFYIDDSLDYLENIDRLLNQ","982906 982574 [Shorter 1063 315 99]","TIGR ID: PG0923","ribosome binding factor A","Cytoplasm","PG0523 is essentially identical to a previously sequencedP.gingivalis protein in GenBank, CAB40971.Numerous significant hits in gapped BLAST; e.g. residues 1-109 are 32% similar to dbj|BAB06130.1| ribosome-binding factor A of Bacillus halodurans, residues 5-111 are 31% similar to emb|CAB13538.1| ribosome-binding factor A of Bacillus subtilis, residues 3-110 are 33% similar to dbj|BAA10137.1| hypothetical protein of Synechocystis sp.This sequence is similar to CT095.","
InterPro
IPR000238
Family
Ribosome-binding factor A
PD007327\"[8-96]TRib_bind_factA
PF02033\"[5-109]TRBFA
TIGR00082\"[1-111]TrbfA
InterPro
IPR009019
Domain
KH, prokaryotic type
G3DSA:3.30.300.20\"[1-111]TKH_prok
noIPR
unintegrated
unintegrated
SSF89919\"[1-104]TSSF89919


","BeTs to 5 clades of COG0858COG name: Ribosome-binding factor AFunctional Class: JThe phylogenetic pattern of COG0858 is -----qvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB000238 (Ribosome-binding factor A) with a combined E-value of 3.6e-08. IPB000238B 33-44 IPB000238C 67-109","Residues 5-111 are 31% similar to a (FACTOR A RRNA PROCESSING RIBOSOME-BINDING RIBOSOME) protein domain (PD007327) which is seen in RBFA_BACSU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Mar 22 12:12:14 MST 2000","Tue Jan 9 13:45:07 2001","Tue Jan 9 13:45:07 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","Residues 5 to 109 (E-value = 2.4e-09) place PG0823 in the RBFA family which is described as Ribosome-binding factor A (PF02033)","","34540680","","","","","","1","","","PG0923" "PG0824","983760","982948","813","ATGAATAGCAGACATCTGACAATCACAATCATTGCCGGCCTCTCCCTCTTTGTACTGACATTGGGCGGCTGCTCCGTAGCCCAACAAGATACGCAGTGGACTCTCGGCGGAAAGCTCTTTACTTCGGCGTGGATACAACGTTCGGCCGAATATCAAGCGCTTTGCATTCAGGCATACAACATCGCTACGGAAAGAGTGGACGCTCTACCGGCAGAACGTAAACAAGGAGATAGGCCTTATGCCATCGTAACGGACATAGACGAAACCATTTTGGACAATACGCCTAACTCCGTGTATCAGGCTCTCAGGGGCAAGGATTATGATGAAGAGACTTGGGGGAAATGGTGTGCACAGGCCGATGCCGACACACTGGCAGGAGCTTTGTCTTTCTTCCTCCATGCAGCGAACAAGGGGATCGAGGTCTTTTACGTCACCAACCGCAGAGACAATCTGCGCGAAGCAACTCTTCAGAACCTTCAGCGTTACGGATTCCCCTTTGCCGATGAAGAACATTTGCTTACGACCCATGGGCCATCCGACAAAGAACCCCGTCGGCTCAAAATACAAGAACAGTATGAAATAGTATTGCTCATAGGAGACAACTTGGGCGACTTCCACCACTTCTTCAATACGAAAGAAGAGTCCGGACGCAAACAGGCTCTGGGCCTGACAGCCGGGGAGTTTGGCCGGCACTTCATCATGCTGCCCAATCCCAACTACGGATCTTGGGAACCGGCATGGTACGGCGGGAAGTATCCGCCACTGCCCGAAAGAGACAAAGCACTTAAACAACTGCACTCACAGAACAGCAGA","6.10","-4.21","30680","MNSRHLTITIIAGLSLFVLTLGGCSVAQQDTQWTLGGKLFTSAWIQRSAEYQALCIQAYNIATERVDALPAERKQGDRPYAIVTDIDETILDNTPNSVYQALRGKDYDEETWGKWCAQADADTLAGALSFFLHAANKGIEVFYVTNRRDNLREATLQNLQRYGFPFADEEHLLTTHGPSDKEPRRLKIQEQYEIVLLIGDNLGDFHHFFNTKEESGRKQALGLTAGEFGRHFIMLPNPNYGSWEPAWYGGKYPPLPERDKALKQLHSQNSR","983958 982948 [Bad Olap 1067 199 0]","BLAST hit to Arabidopsis thaliana and Lycopersicon esculentum (tomato).TIGR ID: PG0924","acid phosphatase","Outer membrane, Periplasm, Cytoplasm","PG0523 is 98% identical to a previously sequenced P.gingivalis protein in GenBank,CAB40970. Numerous significant hits in gapped BLAST; e.g. residues 18-248 are 41% similar to emb|CAA73299.1| acid phosphatase of Chryseobacterium meningosepticum, residues 1-263 are 36% similar to emb|CAA73175.1| acid phosphatase of Streptococcus equisimilis, residues 11-269 are 33% similar to gb|AAC05186.1| phytase of Enterobacter cloacae.","
InterPro
IPR005519
Family
Acid phosphatase (Class B)
PF03767\"[1-243]TAcid_phosphat_B
InterPro
IPR006423
Family
5-nucleotidase lipoprotein e(P4)
PIRSF019271\"[1-271]TAcid_Ptase_C
TIGR01533\"[1-265]Tlipo_e_P4
noIPR
unintegrated
unintegrated
PS51257\"[1-24]TPROKAR_LIPOPROTEIN
SSF56784\"[37-246]TSSF56784


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 42-248 are 44% similar to a (PROTEIN STORAGE VEGETATIVE PRECURSOR) protein domain (PD005001) which is seen in O08351_FLAME.","","Thu Jun 14 14:04:42 MDT 2001","","Thu Jun 14 14:04:42 MDT 2001","Thu Jun 14 14:04:42 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 14:04:42 MDT 2001","Thu Jun 14 14:04:42 MDT 2001","","Mon Jun 18 10:48:43 MDT 2001","Tue Jan 9 14:18:43 2001","Mon Jun 18 10:51:31 MDT 2001","Tue Jan 9 14:18:43 2001","","Mon Jun 18 10:48:43 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri May 4 12:50:07 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 1 to 243 (E-value = 2.4e-88) place PG0824 in the Acid_phosphat_B family which is described as HAD superfamily, subfamily IIIB (Acid phosphatase) (PF03767)","Mon Jun 18 10:48:43 MDT 2001","34540681","","","","","","1","","","PG0924" "PG0825","984371","983760","612","ATGGATTACGAAATAGAGAACAACCATGCCGACAGTATTCGCAGGGGAAGTATCGAAGTGATATGCGGCTCCATGTTCAGTGGCAAGACGGAAGAGCTGCTACGCCGTCTGCGGAGAGCTAAGATAGCGCGCCAGACGGTGGAGATATTCAAGCCGACCATCGATATACGCTACGACGAAACGGATGTCGTTTCGCATGACAAGAATGCTATCGCTTCCACCCCCGTGGACAATTCGGCCAATATACTGCTGCTATCCTCCCAAGTGGATGTGGTGGGGATAGACGAAGCCCAGTTCTTTGATGAGGGTCTTGTGGAAGTAGCCCAGCAATTGGCCGATCAGGGTGTTCGCGTTGTGATCGCCGGATTGGACATGGACTTTCGACGTCAGCCTTTCGGACCTATGCCGGGCTTGTGTGCCATAGCCGACTCCGTGACCAAAGTTCATGCCGTGTGTGTGGAATGCGGCCGATTGGCCAGCTATTCTTTCCGTCGTGTCCAAGGCGATCAGCAAGTGATGCTGGGCGAACTGAACGAATACAGTCCCCTCTGCAGAACCTGCTACAGGAAATGCAGTTCTCCCCCACAAACAGAAGAAATCCATTCGACAATA","4.90","-7.36","22726","MDYEIENNHADSIRRGSIEVICGSMFSGKTEELLRRLRRAKIARQTVEIFKPTIDIRYDETDVVSHDKNAIASTPVDNSANILLLSSQVDVVGIDEAQFFDEGLVEVAQQLADQGVRVVIAGLDMDFRRQPFGPMPGLCAIADSVTKVHAVCVECGRLASYSFRRVQGDQQVMLGELNEYSPLCRTCYRKCSSPPQTEEIHSTI","984371 983760 [Shorter 1065 199 76]","TIGR ID: PG0925","thymidine kinase","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 9-189 are 55% similar to gb|AAC98909.1| thymidine kinase of Rhodothermus sp. 'ITI 518', residues 14-203 are 44% similar to >dbj|BAB07498.1| thymidine kinase of Bacillus halodurans, residues 16-185 are 47% similar to emb|CAB15734.1| thymidine kinase of Bacillus subtilis.","
InterPro
IPR001267
Family
Thymidine kinase
PTHR11441\"[1-190]TTK_cell
PF00265\"[16-188]TTK
noIPR
unintegrated
unintegrated
SSF52540\"[13-130]TSSF52540


","BeTs to 5 clades of COG1435COG name: Thymidine kinaseFunctional Class: FThe phylogenetic pattern of COG1435 is ------v-eb-h--gpo----Number of proteins in this genome belonging to this COG is 1","***** IPB001267 (Thymidine kinase cellular-type) with a combined E-value of 1.8e-54. IPB001267A 18-50 IPB001267B 88-102 IPB001267C 109-163 IPB001267D 174-188","Residues 42-170 are 27% similar to a (PROTEIN ORF PUTATIVE KINASE) protein domain (PD000146) which is seen in KITH_AMEPV.Residues 16-188 are 57% similar to a (KINASE THYMIDINE TRANSFERASE ATP-BINDING) protein domain (PD002207) which is seen in Q9ZIG2_BBBBB.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Jan 9 14:22:17 2001","Fri May 4 13:03:20 MDT 2001","Tue Jan 9 14:22:17 2001","Fri May 4 13:03:20 MDT 2001","Fri May 4 13:03:20 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri May 4 13:03:20 MDT 2001","-63% similar to PDB:2J9R THYMIDINE KINASE FROM B. ANTHRACIS IN COMPLEX WITH DT. (E_value = 2.3E_40);-63% similar to PDB:2JA1 THYMIDINE KINASE FROM B. CEREUS WITH TTP BOUND AS PHOSPHATE DONOR. (E_value = 3.9E_40);-62% similar to PDB:1XX6 X-ray structure of Clostridium acetobutylicum thymidine kinase with ADP. Northeast Structural Genomics Target CAR26. (E_value = 7.3E_39);-55% similar to PDB:1XMR Crystal Structure of Thymidine Kinase with dTTP from U. urealyticum (E_value = 6.4E_27);-55% similar to PDB:2B8T Crystal structure of Thymidine Kinase from U.urealyticum in complex with thymidine (E_value = 6.4E_27);","","","Residues 16 to 188 (E-value = 4.5e-68) place PG0825 in the TK family which is described as Thymidine kinase (PF00265)","Fri May 4 13:03:20 MDT 2001","34540682","","","","","","1","","","PG0925" "PG0826","985142","984729","414","ATGAATACGATCACTATCGATAGCACGTCCGACCTCGGCCGCGCAGCACGCGACTTCATTGCGCTGATGGGCGACAATACCGTTTTTGCCTTTTATGCTCCGATGGGTACGGGCAAGACCACTTTCATCAAAGCCGTATGCGAGGAGCTGGGTGTCTCGGACGTTATCAATAGTCCCACCTTTTCGATTATCAACGAGTACCGCTCGGATCAGACGGGCGAACTGATCTATCACTTCGACTGCTACCGGCTCAACAAGATAGAAGACGCCCTGAATCTGGGTGTAGAAGACTATTTCGATAGCGGTAGTCTCTGCTTTATCGAATGGCCGGAGCTTCTGGAGCCGATACTCCCGAACGATACGGTTCATGTCCGAATCGAAGAGCTGGAAGACGGCAAGCGCAGGCTTACATTC","4.20","-12.66","15597","MNTITIDSTSDLGRAARDFIALMGDNTVFAFYAPMGTGKTTFIKAVCEELGVSDVINSPTFSIINEYRSDQTGELIYHFDCYRLNKIEDALNLGVEDYFDSGSLCFIEWPELLEPILPNDTVHVRIEELEDGKRRLTF","985142 984729","TIGR ID: PG0927","conserved hypothetical protein","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 3-138 are 35% similar to emb|CAB12410.1| similar to hypothetical proteins of Bacillus subtilis, residues 27-133 are 34% similar to gb|AAC77125.1| hypothetical protein of Escherichia coli K12, residues 35-133 are 37% similar to gb|AAC21743.1| conserved hypothetical protein of Haemophilus influenzae Rd.","
InterPro
IPR003442
Domain
Protein of unknown function UPF0079, ATPase bacteria
PF02367\"[5-136]TUPF0079
TIGR00150\"[4-138]TUPF0079_ATPase_bac
InterPro
IPR012298
Family
ATPase, cell wall biosynthesis
PIRSF006361\"[3-134]TATPase
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[4-138]TG3DSA:3.40.50.300
SSF52540\"[23-125]TSSF52540


","BeTs to 10 clades of COG0802COG name: Predicted nucleotide-binding protein, YjeE familyFunctional Class: RThe phylogenetic pattern of COG0802 is -----qvcebrhuj--olinxNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 27-126 are 36% similar to a (PROTEIN ATP-BINDING INTERGENIC REGION) protein domain (PD006723) which is seen in YJEE_ECOLI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Jan 10 11:19:23 2001","Wed Jan 10 11:19:23 2001","Wed Jan 10 11:19:23 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","-61% similar to PDB:1FL9 THE YJEE PROTEIN (E_value = 1.8E_16);-61% similar to PDB:1HTW COMPLEX OF HI0065 WITH ADP AND MAGNESIUM (E_value = 1.8E_16);","","","Residues 5 to 136 (E-value = 2.7e-25) place PG0826 in the UPF0079 family which is described as Uncharacterised P-loop hydrolase UPF0079 (PF02367)","","34540684","","","","","","1","","","PG0927" "PG0827","986710","985157","1554","ATGGAAAAAAACATGAGACCGTATACCGTACTATGGGCCGATGATGAGATCGACCTGCTCAAACCGCACATTCTATTTCTCGAACAGAAAGGGTATCAGGTAACACCCGTACTTAGTGGCAACGATGCCATAGAAGCCGTGCAAAATAACGACTTCGACATCGTATTCCTCGATGAGAACATGCCCGGCATCGGCGGACTGGATGCTTTGCAGAAGATCAAAGAGCTGAAACCCTACACACCCGTCGTCATGATAACGAAAAGCGAAGAGGAGCATATCATGACACAAGCCATCGGGGGAAAGATAGCGGACTACCTCATCAAACCGGTGAATCCGAATCAGCTCCTCCTGTCGCTCAAAAAAAACCTGCAGCAGCACAGTATCATCAGCGAAACCACGAACACGAACTACCGGCAAGAGTTCGTCCAACTTGGCACGCAGATGAGTGGTAAGCTTTCCTTCGAAGAATGGAAAGAACTGTACCGCCGGATCGTATTCTGGGAGATAGAACTGGAACAAGCCGACAGACAGATGGGCGAACTCCTCGAAATGCAGAAACAGGAAGCCAACCGTCTCTTTGCCCGATTCGTCACACAAAACTATCGGGAATGGATTGCCAAGCCGGATACACGTCCGACGATGAGCCCGGATCTTTTCAAACAAAAGGTATTCCCCCTACTCGACAATGGCGAAAAGGTATTCTTCATCCTCATAGACAACTTTCGGCAGGATCAGTGGGAGAGCGTGAAATCCATGCTCAGCGAGTTTTACACCTTCGAAGAAGATATGTACCTGTCCATCCTGCCGACAGCGACCCAATATGCACGCAATGCCATCTTCTCCGGCCTGATGCCGCTGCAGATAGAAAAGATGTTTCCCGACCTCTGGGTGGACGAAGAGAGCGAAGAGGGTAAGAATCTCAACGAAGAGCCTATGATCCGGACGCTGATCGAACGCTACCGCAAGCACTACAGCTTCTCCTACAATAAGGTATATGAGACCAAGTTCGGCGAACGGCTGCTGGGACAAATCCGGTCACTGTCGCAGAACCAACTCAATGTGATAGTCCTGAACTTCGTGGACATGATGTCGCATGCTCGTACTGATAGCAAGATGATTCGAGAGCTGGCATCCAACGAAGCAGCCTATCGCTCGCTGACGAAGAGCTGGTTCAAGCATTCGACTACCTACAATCTCTTCCGCAGCATTGCCGAAATGGGTTATAAAGTGGTATTGACCACTGACCATGGTACTATTCAGGTGAAGAATCCCGTCAAAGTGATCGGAGACAGAAGTACCAATACCAACCTCAGATACAAAATAGGTAAGAACCTCGACTACAACCCGAAAGAAGTATTCGAGATCAAAGATCCTGCAAGTGTAGGGCTGCCCCATAACAACCTCTCGGACAAATTCATCTTCACGAAAGAGGATGACTTCTTCGCCTACCCGAATAACTACAACTACTACGTACAATACTATCGCAATACATTCCAGCACGGAGGCATATCGCTCGAAGAGATGCTTGTGCCCGTAATTACGATGCAACCCAAG","5.50","-8.77","60709","MEKNMRPYTVLWADDEIDLLKPHILFLEQKGYQVTPVLSGNDAIEAVQNNDFDIVFLDENMPGIGGLDALQKIKELKPYTPVVMITKSEEEHIMTQAIGGKIADYLIKPVNPNQLLLSLKKNLQQHSIISETTNTNYRQEFVQLGTQMSGKLSFEEWKELYRRIVFWEIELEQADRQMGELLEMQKQEANRLFARFVTQNYREWIAKPDTRPTMSPDLFKQKVFPLLDNGEKVFFILIDNFRQDQWESVKSMLSEFYTFEEDMYLSILPTATQYARNAIFSGLMPLQIEKMFPDLWVDEESEEGKNLNEEPMIRTLIERYRKHYSFSYNKVYETKFGERLLGQIRSLSQNQLNVIVLNFVDMMSHARTDSKMIRELASNEAAYRSLTKSWFKHSTTYNLFRSIAEMGYKVVLTTDHGTIQVKNPVKVIGDRSTNTNLRYKIGKNLDYNPKEVFEIKDPASVGLPHNNLSDKFIFTKEDDFFAYPNNYNYYVQYYRNTFQHGGISLEEMLVPVITMQPK","986710 985157","TIGR ID: PG0928","two-component response regulator","Cytoplasm","Residues 10-112 have 31% similarity to Z99116, B. subtilis. two-component response regulator.Residues 1-112 have 32% similarity to AP001512, B. halodurans two-component response regulator.Residues 10-112 have 34% similarity to AF129010, S. aureus response regulator.","
InterPro
IPR001789
Domain
Response regulator receiver
PD000039\"[8-112]TResponse_reg
PF00072\"[8-120]TResponse_reg
SM00448\"[8-119]TREC
PS50110\"[9-123]TRESPONSE_REGULATORY
InterPro
IPR011006
Domain
CheY-like
SSF52172\"[5-201]TCheY_like
InterPro
IPR013973
Domain
PglZ domain
PF08665\"[231-425]TPglZ
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.2300\"[5-159]TG3DSA:3.40.50.2300
PTHR23283\"[26-128]TPTHR23283
PTHR23283:SF49\"[26-128]TPTHR23283:SF49
SSF53649\"[231-515]TSSF53649


","BeTs to 5 clades of COG0745COG name: Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domainFunctional Class: T,KThe phylogenetic pattern of COG0745 is -----QVCEBRHUJ----inXNumber of proteins in this genome belonging to this COG is 3","No significant hit to the Blocks database.","Residues 10-112 are 31% similar to a (PROTEIN SENSORY TRANSDUCTION) protein domain (PD000039) which is seen in RESD_BACSU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Mar 8 13:32:35 MST 2001","Thu Mar 8 13:32:35 MST 2001","Wed Jan 10 11:22:37 2001","","Thu Mar 8 13:32:35 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 9-131 are 24% similar to PG1571.","Wed Jan 10 11:22:37 2001","Thu Mar 8 13:32:35 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 8 to 127 (E-value = 1.7e-25) place PG0827 in the Response_reg family which is described as Response regulator receiver domain (PF00072)","Thu Mar 8 13:32:35 MST 2001","34540685","","","","","","1","","","PG0928" "PG0828","987241","986762","480","ATGTACAACTCTAAAAGAATTATTAGCAAACTAAAAATTAAAGAGTATCTAAAAATGAGACCCCAGAACAGCAACAAAGGCGCAAAAAACGATGAAGAAAAAGTATTAGTATCGATTGACAGCGTAATCGATATTATCTACGACGAATGTATTTTGAACTTGAAAGGCAAAACACTAACAAATACGCAAGGAACAAATAAAATAATTGAGGTCAATCAAGTTGAAGTAAAAAGAATTACCATAAATAATAAAGTAAACCGGATTAAATCCCAAACGATCAAAGAAGCTTTAAGAATAGTAATAGAAAAGAAATCTGTGACACGAAAAGAAATATATGACACATTTCTTCGAAGAAACTCTTCAGGAATAGTACTAATCCTTGCAGAAATCCCCTTTATAAGAAAAATCGACCAACCTAAAATCACTCTTGAACTTATTGAAGAGGAATACGAAAAGTTTATTTCTAACCTCAAGCAACAT","10.40","10.19","18672","MYNSKRIISKLKIKEYLKMRPQNSNKGAKNDEEKVLVSIDSVIDIIYDECILNLKGKTLTNTQGTNKIIEVNQVEVKRITINNKVNRIKSQTIKEALRIVIEKKSVTRKEIYDTFLRRNSSGIVLILAEIPFIRKIDQPKITLELIEEEYEKFISNLKQH","987241 986762","TIGR ID: PG0929","hypothetical protein","Cytoplasm","No significant hits in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Feb 14 16:08:37 MST 2001","Wed Jan 10 18:03:54 2001","Wed Jan 10 18:03:54 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Feb 14 16:08:37 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540686","","","","","","1","","","PG0929" "PG0829","987634","987248","387","ATGAACCGGCGAAAGCAGCAAGGGCGGAGGCAGCCACTGGGAGAAAGGAGACCGAGTCGCAAGCGAATGGTCTGGGGAGCAATCGTCGTCCTCCTCAACTGCGTCCTCCTCTTTCGCTTGTGCAGTGCCGACAAAGAACCGGACAGCGGAGCGAAAGCGACGAAAGAGCAGTATTGGCTCAACTACGATCCCGATCGCCCTGTAACAGACATACTGAATTACGACTACGACAATCGCATGATCATCTATCGCGACACAGGCCGATTCTCCGACACCCCCTCCCCCACACCGGATGAAGGCGAGAAAAAAGCGGATCAAGACGATGAGCGCGAACCCCTCAATGACTACGAAGACTACTACGAAGAGCTGTACGACTACTTTCACGAT","4.70","-5.85","15434","MNRRKQQGRRQPLGERRPSRKRMVWGAIVVLLNCVLLFRLCSADKEPDSGAKATKEQYWLNYDPDRPVTDILNYDYDNRMIIYRDTGRFSDTPSPTPDEGEKKADQDDEREPLNDYEDYYEELYDYFHD","987634 987248","TIGR ID: PG0930","hypothetical protein","Cytoplasm","No significant hits in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-43]?signal-peptide
tmhmm\"[23-43]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Jan 10 18:04:39 2001","Wed Jan 10 18:04:39 2001","Wed Jan 10 18:04:39 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540687","","","","","","1","","","PG0930" "PG0830","988355","987645","711","ATGGGGAACCGAAGACAAACAGATGCTGACAAGTCCGTATCGAAAACAAAACAACCCTACCCTATTTCGCTTATGTCGATCCTGTATAATTTTCGCAAGATGCCGCCACGTCCCGACCAAAATGAATCCGAAGAGGCAGAAGGACGGTTATTTGCTCAAGCTATCATCCAACGGCAGTACACCACCGAGGACCTTTGTCGGGACATTTCGGACAGGTCGTCCTTCAGCTCCGGCGACATCACGGGACTGATGATAGCCATGGAGGAGTTGATATTCGAGTATCTGGCTTCGGGCTATAGCTTCCGGCTGGGCAATATCGGCACATTATCGGCCAAAGTAAAATCGCGCGGAGTAAGAGACAAAAAGGAAATCCGATCCGGTTCCGTCCAAGCCGTGGATATCAATTTCCGTTCCACACCGCAAGCCAAACGACGGATGCGCAGCATGAGTGTGAAGCGCGGTCCGAGCTTCGGCCAATCCTGCCCCAAAGCAGACGAGGAAGAACGCTATCGCTTGGCGGCAGGGCACATCCGCCACAGAGGATATATTCGGATAGCCGAGTACAGCACACTATCCGGCCTGCTCAAACACAGTGCTACAAGGGAACTGAACCACTGGGTACAAGAAGGTAAATTGGCGACACGCGGACTCTGCTCGCACAAGGTATACGTCCTGCCTGAACCCACATCGCAAAACAGTGAATCGATAGAT","10.40","11.07","26828","MGNRRQTDADKSVSKTKQPYPISLMSILYNFRKMPPRPDQNESEEAEGRLFAQAIIQRQYTTEDLCRDISDRSSFSSGDITGLMIAMEELIFEYLASGYSFRLGNIGTLSAKVKSRGVRDKKEIRSGSVQAVDINFRSTPQAKRRMRSMSVKRGPSFGQSCPKADEEERYRLAAGHIRHRGYIRIAEYSTLSGLLKHSATRELNHWVQEGKLATRGLCSHKVYVLPEPTSQNSESID","988355 987645","TIGR ID: PG0931","conserved hypothetical protein","Periplasm, Cytoplasm","Its nearest neighbor in the NR database is gi:29349569 from Bacteroides thetaiotaomicron VPI-5482.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Mar 4 11:02:59 2005","Fri Mar 4 11:02:59 2005","Wed Jan 10 18:06:25 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Resdiues 69-225 are 29% similar to PG1712, residues 51-136 are 30% similar to PG0200.","Wed Jan 10 18:06:25 2001","Fri Mar 4 11:02:59 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Fri Mar 4 11:05:02 2005","","1","","","PG0931" "PG0831","988645","989892","1248","ATGGACAGACTACAACTTTATGAATCGAAAAAACTGCGGAGGGAAACTCCCTTGTCTCCCCTTCTACGTATATTTGCAGGGCAATCAGTACACAATCATCGACCCATGTATTTTCGCGACGTTGCCGGACTTGAAGACTTGAAAACCTATCTGAGACGAACGGCTCAGACGAGGCAGATAGCCCATGCACAGCTCTTTGCCGGAGAAGAGGGGGGAGGGGCTTTCCCTTTGGCTTTGGCCTACGCACGCTATCTCAACTGCCAGATGCCGACCGATACGGATGCTTGTGGTCATTGTCCGTCGTGTGTGAAATACGATGCGCTGGCACACCCCGATCTGTTTTTCGTCTATCCTGTCGTAAACGCGTCCTCTTCGCCTGCACCGAGCGATGACTACATCCGTCAGTGGCGCGAGATGCTCGGGTCGGAATCCTACTTTACCCCTGCCGACTGGCTCGAATACATCAAAGCCGGCAACAGCCAACCCATCATTTACAGCAAGGAAGCCGAAGCCGTGGAGCAGAAACTCAGCTTCCGCATCTATGAAGCCTCGTATCGTGTGGTGATGATTTGGCAACCGGAGCGGATGAATGAAGCCATGGCAAACAAACTGCTGAAGCTGATAGAGGAGCCGCCCGAGCATACGCTCTTCTTTATGATCAGCAGCGAGCCGGACAAGGTGTTGGGAACGATCAGGAGCCGTACACAGCTGATCAACGTGCGCTTGCTGCACGAGATCGAAATAGTGGAAGCCTTGTCTCGTAACAATCAGGGAAACACGGCCGACATCATCCGCATAGCGCATTTGGCAGAGGGCAACTATCGGCGAGCCATGGATCTCTATCGGGGCGAATGGGCTGATCGCGACAACTTTGTGCTTATGGGACGAATGATGGGTAGTATCATCAAGGGGGATCCCTCCAAGATGCGTCCCGTGGCAGATGAGTTGGCCGCTCTCGGACGCGTCAGCCAGATCGGGTTCCTTACTTATTGTTTGCGGCTCTTTCGCGAGTTGTATATAAGTAGAGTAGGGGTTGCAAAACTGAACTACCTCTCTCCCGAGGAAGAATCCTTCGTCGATATGCTCAGTGGAGGCATTACGGGACAGAACATCCGACCGGTGATGGAGGAGGTGGAGCTGGCTATCCGTCATATTCGTCAGAATGGAAACGGTCGGATGATTTTTTTCGATCTCCTCCTCCGCCTTACGGCCGCTCTTGCCCCTGCTCTTCGTGCCAAAGGCCTTAAA","7.80","2.96","47377","MDRLQLYESKKLRRETPLSPLLRIFAGQSVHNHRPMYFRDVAGLEDLKTYLRRTAQTRQIAHAQLFAGEEGGGAFPLALAYARYLNCQMPTDTDACGHCPSCVKYDALAHPDLFFVYPVVNASSSPAPSDDYIRQWREMLGSESYFTPADWLEYIKAGNSQPIIYSKEAEAVEQKLSFRIYEASYRVVMIWQPERMNEAMANKLLKLIEEPPEHTLFFMISSEPDKVLGTIRSRTQLINVRLLHEIEIVEALSRNNQGNTADIIRIAHLAEGNYRRAMDLYRGEWADRDNFVLMGRMMGSIIKGDPSKMRPVADELAALGRVSQIGFLTYCLRLFRELYISRVGVAKLNYLSPEEESFVDMLSGGITGQNIRPVMEEVELAIRHIRQNGNGRMIFFDLLLRLTAALAPALRAKGLK","988585 989892","For other pol III subunit sequences see PG0031, PG1614, PG1615, PG1245.TIGR ID: PG0932","DNA polymerase III gamma/tau subunit","Cytoplasm","Several weak hits to pol III gamma/tau subunit sequences, e.g. residues 33-280 are 26% similar to the gamma subunit of Aquifex (AE000759), residues 34-317 are 25% similar to gb|AAF84614.1|AE004002_4 DNA polymerase III subunit of Xylella fastidiosa, residues 34-275 are 29% similar to gb|AAF11953.1|AE002071_7 DNA polymerase III, tau/gamma subunit of Deinococcus radiodurans.","
InterPro
IPR004622
Domain
DNA polymerase III, delta prime subunit
TIGR00678\"[48-277]TholB
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[38-243]TG3DSA:3.40.50.300
PTHR11669\"[160-280]TPTHR11669
SSF52540\"[38-283]TSSF52540


","BeTs to 13 clades of COG0470COG name: ATPase involved in DNA replicationFunctional Class: LThe phylogenetic pattern of COG0470 is AMTKYQVCEBRHUJGPOLINXNumber of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","Residues 38-222 are 24% similar to a (PROTEIN ATP-BINDING PROTEASE SUBUNIT REGULATORY HOMOLOG) protein domain (PD000092) which is seen in O67707_AQUAE.","","Thu Jun 14 14:05:32 MDT 2001","","Thu Jun 14 14:05:32 MDT 2001","Thu Jun 14 14:05:32 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 14:05:32 MDT 2001","Thu Jun 14 14:05:32 MDT 2001","","Mon Jun 18 10:52:38 MDT 2001","Tue Dec 19 14:39:02 MST 2000","Mon Jun 18 10:56:05 MDT 2001","Tue Dec 19 14:39:02 MST 2000","","Mon Jun 18 10:52:38 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 29-406 are 23% similar to PG1245, a predicted DNA pol III gamma/tau subunit.","Mon Jun 18 10:53:48 MDT 2001","Tue Apr 3 17:28:16 MDT 2001","-42% similar to PDB:1A5T CRYSTAL STRUCTURE OF THE DELTA PRIME SUBUNIT OF THE CLAMP-LOADER COMPLEX OF ESCHERICHIA COLI DNA POLYMERASE III (E_value = 4.7E_16);-42% similar to PDB:1JR3 Crystal Structure of the Processivity Clamp Loader Gamma Complex of E. coli DNA Polymerase III (E_value = 4.7E_16);-42% similar to PDB:1XXH ATPgS Bound E. Coli Clamp Loader Complex (E_value = 4.7E_16);-42% similar to PDB:1XXI ADP Bound E. coli Clamp Loader Complex (E_value = 4.7E_16);-40% similar to PDB:1NJF Nucleotide bound form of an isolated E. coli clamp loader gamma subunit (E_value = 1.9E_12);","","","No significant hits to the Pfam 11.0 database","Mon Jun 18 10:52:38 MDT 2001","34540688","","","","","","1","","","PG0932" "PG0832","990139","992295","2157","ATGAAAGTGTACAAGACAAATGAGGTGAAAAACATCTCCATTTTGGGTAGCTCCGGCGCCGGAAAAACCACCCTTGCAGAGGCGATGCTCTTCGAGGGTGGAGTGATAAAACGTAGAGGAAGCATAGATGCAGGCAATACGGTCTGCGACTATTTCCCCGTAGAGAAGGAGTATGGATACTCTGTATTCTCTACGGTTTTCTCTGTAGAGTGGCAGGATAAAAAGCTGAATTTCATCGACTGCCCGGGAGCGGACGACTTTATCGGCGGTACCGTCTCGGCTCTGAACGTCACGGACTGTGCCCTCGTAGTAGTGAATGCGCAGTATGGCGTGGAAGTAGGGCTTATCAATCAATTCCGCTATGTGGAGCAGTTGCACAAGCCTGCCATCTTCATCATCAACCAGTTGGATCAGGACAAGGCCGACTTCGACTCTGCTGTATCACAGCTTCGGGAGCGATATGGCTCCAAGATAGTGCCCGTACAGTATCCCGTAAATGCGGGAGCAGGGTTCAATGCCGTGGTCGATGTGCTGAAGATGAAAATGTATCGCTGGAAACCTGAAGGAGGTGTGCCCGAGGTACTGGAGATTCCGGCCGAGGAGCAAGACAAAGCGAAAGAAATGCATCAGGCTTTGGTGGAGGCTGCGGCCGAAAACGATGAGAGCCTGATGGAAAAATTCTTCGATCAGGGAAGTCTCTCTGAAGAGGAGATGCGCGATGGTATCCGTGCCGGTCTGATCTCGCAGGGTATGTACCCCGTGTTCTGTGTCAGTGCGGAGAAGGATATGTGTGTGCGCCGTACACTGGAGTTCCTCGGCAACGTGGTTCCCGGCGTGAACAAACTGCCGGCACCTGTGGCTGTGAGCGGAGAGGAAGTGAAACCCGATGCTTCGGCTCCCCTTTGCATCCATTTCTTCAAGACTACGATAGAACCGCATATTGGTGAAGTATCATATTTCAAAGTAATGAGCGGTACCCTCACCGAGGGAGTAGATCTGCTCAATGCTGACCGAGGCTCCAAGGAGCGCATCAGTCAGATATTCGTGCCGGCCGGACAGCAACGCATCAAGGTGGACCAGATGTGTGCCGGCGATATAGGAGCTACTGTGAAGCTCAAAGAGGTACGCCGTGGCAATACGCTGAACGAAAAGGGCGTGGAGCATCGTTTCGACTTGGTCAAATTCCCCGAGCCCAAGTACCGTCGTGCCATCAGGGCTGCCAACGAATCCGATACGGAAAAGATGAATGCAGCTCTGAATGAGATGCGCGAAGAGGATCCGACATGGATCGTGGAACAGAGCAAAGAGCTGCGTCAGACCATTGTCAGCGGACAAGGGGAATTCCACCTGCGTACGCTTAAATGGCGATTGGAACATAACGAAAAGATCGAGATAGAATATATAGAGCCTCGTATCCCTTATCGTGAGACCATTACAAAGGCTGCTCGTGCGGACTATCGTCACAAAAAACAGTCGGGTGGTGCCGGCCAGTTCGGAGAGGTGCACCTGATCGTGGAGCCGTACAGTGACGACAAACCACTGCCCGAATCGTTCAAATTCGGCGGCCAGGAGTTTCGTATCACTCCGCGCGACACGCAGGTAGTGGAATTGGAATGGGGCGGTAAGCTCGTCTTCGTTAATAGCGTAGTGGGTGGTGCCATCGATATGCGTTTCATGCCTGCCATACTGAAAGGCATCATGTCGCGCATGGAGCAGGGTCCGCTGACCGGTTCGTATGCTCGCGATGTGCGCGTAGTGGTTTACGATGGTAAGATGCACCCTGTGGACAGCAATGAAGTATCGTTCATGCTGGCCGGTCGGAATGCTTTCAGCACGGCTTTCAAAGAAGCCGGCCCGAAGATTCTGGAGCCTGTCTATGATGTGGAAGTATCGGTTCCTGCCGATTATTTGGGCGATGTCATGAGCGATATGCAGGGACGTCGTGCCATCATCATGGGTATGAACAGCCGCAAGGGTTATGAGCAGCTTTTGGCGAAAGTGCCTCTGAAAGAGCTTTCCAACTATTCCACTTCGCTCAGCTCTATTACAGGTGGACGTGCATCCTTCACGATGAAGTTTGCTTCCTATGAATTGGTTCCTGCCGATGTACAGGAGCGTCTGCTGAAAGAATACGAAGAGCAGACCAAAGACGAAGCA","5.20","-15.82","80179","MKVYKTNEVKNISILGSSGAGKTTLAEAMLFEGGVIKRRGSIDAGNTVCDYFPVEKEYGYSVFSTVFSVEWQDKKLNFIDCPGADDFIGGTVSALNVTDCALVVVNAQYGVEVGLINQFRYVEQLHKPAIFIINQLDQDKADFDSAVSQLRERYGSKIVPVQYPVNAGAGFNAVVDVLKMKMYRWKPEGGVPEVLEIPAEEQDKAKEMHQALVEAAAENDESLMEKFFDQGSLSEEEMRDGIRAGLISQGMYPVFCVSAEKDMCVRRTLEFLGNVVPGVNKLPAPVAVSGEEVKPDASAPLCIHFFKTTIEPHIGEVSYFKVMSGTLTEGVDLLNADRGSKERISQIFVPAGQQRIKVDQMCAGDIGATVKLKEVRRGNTLNEKGVEHRFDLVKFPEPKYRRAIRAANESDTEKMNAALNEMREEDPTWIVEQSKELRQTIVSGQGEFHLRTLKWRLEHNEKIEIEYIEPRIPYRETITKAARADYRHKKQSGGAGQFGEVHLIVEPYSDDKPLPESFKFGGQEFRITPRDTQVVELEWGGKLVFVNSVVGGAIDMRFMPAILKGIMSRMEQGPLTGSYARDVRVVVYDGKMHPVDSNEVSFMLAGRNAFSTAFKEAGPKILEPVYDVEVSVPADYLGDVMSDMQGRRAIIMGMNSRKGYEQLLAKVPLKELSNYSTSLSSITGGRASFTMKFASYELVPADVQERLLKEYEEQTKDEA","990139 992295","TIGR ID: PG0933","translation elongation factor G protein","Cytoplasm","Numerous significant hits in gapped BLAST; e.g.residues 4-709 are 35% similar to embCAA34354.1 elongation factor G (AA 1-691) of Thermus thermophilus, residues 9-718 are 33% similar to gbAAD36718.1AE001807_9 translation elongation factor G of Thermotoga maritima, residues 10-710 are 35% similar to gbAAF85426.1AE004069_7 elongation factor G of Xylella fastidiosa.This sequence is similar to BT2167.","
InterPro
IPR000640
Domain
Translation elongation factor EFG/EF2, C-terminal
G3DSA:3.30.70.240\"[623-711]TTransl_elong_EFG/EF2_C
PF00679\"[620-707]TEFG_C
InterPro
IPR000795
Domain
Protein synthesis factor, GTP-binding
PR00315\"[11-24]T\"[77-87]T\"[93-104]T\"[129-138]TELONGATNFCT
PF00009\"[7-261]TGTP_EFTU
InterPro
IPR004161
Domain
Translation elongation factor EFTu/EF1A, domain 2
PF03144\"[315-382]TGTP_EFTU_D2
InterPro
IPR005225
Domain
Small GTP-binding protein domain
TIGR00231\"[7-180]Tsmall_GTP
InterPro
IPR005517
Domain
Translation elongation factor EFG/EF2, domain IV
PF03764\"[470-618]TEFG_IV
InterPro
IPR009000
Domain
Translation elongation and initiation factors/Ribosomal, beta-barrel
SSF50447\"[251-393]TTranslat_factor
InterPro
IPR009022
Domain
Elongation factor G, III and V
SSF54980\"[395-472]T\"[620-709]TEFG_III_V
InterPro
IPR014721
Domain
Ribosomal protein S5 domain 2-type fold
G3DSA:3.30.230.10\"[475-622]TRibosomal_S5_D2-type_fold
noIPR
unintegrated
unintegrated
G3DSA:2.40.30.10\"[295-392]TG3DSA:2.40.30.10
G3DSA:3.30.70.870\"[394-472]TG3DSA:3.30.70.870
G3DSA:3.40.50.300\"[5-282]TG3DSA:3.40.50.300
PTHR23115\"[7-156]T\"[238-415]TPTHR23115
PTHR23115:SF13\"[7-156]T\"[238-415]TPTHR23115:SF13
SSF52540\"[2-277]TSSF52540
SSF54211\"[467-619]TSSF54211


","BeTs to 17 clades of COG0480COG name: Translation elongation and release factors (GTPases)Functional Class: JThe phylogenetic pattern of COG0480 is amtkYqVCEbRHujgpOLinxNumber of proteins in this genome belonging to this COG is 3","***** IPB000795 (GTP-binding elongation factor) with a combined E-value of 1.6e-12. IPB000795A 11-26 IPB000795B 79-110","Residues 224-365 are 35% similar to a (PROTEIN GTP-BINDING FACTOR ELONGATION BIOSYNTHESIS G) protein domain (PD000509) which is seen in EFG_SPIPL.Residues 439-697 are 37% similar to a (PROTEIN GTP-BINDING BIOSYNTHESIS ELONGATION FACTOR EF-2) protein domain (PD000296) which is seen in EFG_THETH.Residues 159-223 are 46% similar to a (ELONGATION FACTOR PROTEIN BIOSYNTHESIS GTP-BINDING G) protein domain (PD002654) which is seen in EFG_SALTY.Residues 61-365 are 25% similar to a (ELONGATION FACTOR EF-G ELONGATION) protein domain (PD125682) which is seen in Q55421_SYNY3.Residues 7-59 are 45% similar to a (PROTEIN GTP-BINDING FACTOR ELONGATION BIOSYNTHESIS TU) protein domain (PD000122) which is seen in O94429_SCHPO.Residues 21-178 are 22% similar to a (PROTEIN GTP-BINDING LIPOPROTEIN PRENYLATION RAS-RELATED) protein domain (PD000015) which is seen in LEPA_BORBU.Residues 61-162 are 30% similar to a (PROTEIN GTP-BINDING FACTOR BIOSYNTHESIS ELONGATION TU) protein domain (PD000134) which is seen in TETO_STRPN.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Mon Mar 26 12:43:17 2001","Thu Jan 11 11:12:59 2001","Mon Jul 28 16:32:45 2008","Thu Jan 11 11:05:52 2001","Thu Feb 22 19:18:26 MST 2001","Thu Feb 22 19:18:26 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 10-710 are 32% similar to PG1692, elongation factor G protein.Residues 7-459 are 23% similar to PG0188, elongation factor G protein. Residues 5-138 are 31% similar to PG0553, a GTP-binding elongation factor.","Tue Apr 3 17:32:57 MDT 2001","Mon Jul 28 16:32:45 2008","-53% similar to PDB:1DAR ELONGATION FACTOR G IN COMPLEX WITH GDP (E_value = 6.8E_117);-53% similar to PDB:1ELO ELONGATION FACTOR G WITHOUT NUCLEOTIDE (E_value = 6.8E_117);-53% similar to PDB:1KTV Crystal Structure of Elongation Factor G Dimer Without Nucleotide (E_value = 6.8E_117);-53% similar to PDB:1EFG THE CRYSTAL STRUCTURE OF ELONGATION FACTOR G COMPLEXED WITH GDP, AT 2.7 ANGSTROMS RESOLUTION (E_value = 8.8E_117);-53% similar to PDB:1JQM Fitting of L11 protein and elongation factor G (EF-G) in the cryo-em map of e. coli 70S ribosome bound with EF-G, GDP and fusidic acid (E_value = 8.8E_117);","","","Residues 7 to 286 (E-value = 1.1e-33) place PG0832 in the GTP_EFTU family which is described as Elongation factor Tu GTP binding domain (PF00009)Residues 315 to 382 (E-value = 1.4e-08) place PG0832 in the GTP_EFTU_D2 family which is described as Elongation factor Tu domain 2 (PF03144)Residues 470 to 618 (E-value = 1.3e-37) place PG0832 in the EFG_IV family which is described as Elongation factor G, domain IV (PF03764)Residues 620 to 707 (E-value = 8.8e-32) place PG0832 in the EFG_C family which is described as Elongation factor G C-terminus (PF00679)","Wed Dec 10 16:55:23 2003","34540689","","","","","","1","","","PG0933" "PG0833","994410","992509","1902","ATGGCAAAGCATCATCCCCTGACAGATTGGTTACCTACCTCCAAAAAAGAAATGGAGGCCAAAGGATGGGACGAAGCGGATGTCATTCTCTTTAGCGGAGATGCTTATGTGGATCACCCGTCCTTCGGAGCTGCCGTCGTAGGAAGAATTTTAGAAGCCGAAGGGCTTCGTGTGGCTATCGTTCCCCAACCGAACTGGCGCGACGATCTTCGGGACTTCCGCAAATTGGGACGTCCTCGCTTGTTTTTCGGAGTTTCGGCAGGAGCGATGGATTCGATGGTGAATAAATACACCGCCAATCGCCGTCTCCGCAGCGAAGACGCTTACACACCGGACAGACGTTCGGATATGCGTCCCGACTACCCAACCATCGTTTACACCCGCATACTGAAAGAGCTGTTTCCGGATGTACCGGTCATTGTCGGGGGGATCGAAGCTTCTCTCCGCCGGCTGACGCATTACGACTATTGGCAGGACAAATTGCTCCCCGGTATACTCTATCAATCAGGTGCCGACCTCCTGATCTACGGCATGGGAGAACTTCCTTTGCACGAGATAGCACAGCGATTGATAGCCGGCGAACCGTTCGATAGTTTGAAGAGCATTCGGCAGATAGCCTATCTTGTTCCAAAAGGAAAGACACCTGTGCCCTGCGAAAACGATCGGCATCTCTTCTCCCATGAAGAATGTTTGTCGGACAAACGCAAGCAGGCACAGAACTTCCGAGAGATAGAGATACAGAGCAATCGCTACGAGGCAGACCGCATACTTCAGGCCGTCGGAGATTCTACCATCGTGGTCAATCCCCCTTTTCCACCCATGAGTACGGCACAAATAGATCAGTCATTCGACTTACCGTACACGCGCCTGCCTCATCCGCGTTATAAGGGGAAGATTATTTCAGCCTATGAGATGATCAAGCACTCGGTCAATGTTCATCGCGGCTGTTTCGGTGGTTGTGCCTTCTGTACCATTTCGGCCCATCAAGGGAAATTTATAGCCTCACGCAGCGAAGCGTCCGTACTCCGCGAAGTGAAAGAGATCACTGAAATGGAGGATTTCAAGGGGTACCTGAGCGATGTCGGAGGCCCTTCGGCCAATATGTACAAAATGCAGGGCTACGACCTCTCGATCTGCAAACGCTGCAAAAAGCCGAGTTGCATTCATCCGAATGTGTGCCCCAATCTGAATGCCGATCATCGTCCTCTGCTGGATTTATTGAGAAGGATCGACAAGAATCCCAAGATCAAGAAGAGCTTTATCGGCAGTGGTGTAAGAATGGATCTCCTCCTTCATAATTATAAAGACAAGGTACTGAAGAAAGCTGCGGACGAATATACGGAGGATCTTATCGTAAAGCATGTATCAGGACGTCTGAAAGTAGCTCCCGAACATAGCTCGGATCGCGTACTCAATCTGATGCGCAAGCCTCCTTTCCGGCAGTTCGCCGAATTCACCAAACGTTTCCAACGTATCAACGAAGCACATGGGCTGCGTCAGCAACTCATCCCTTATTTCATATCCAGCCACCCGGGCTGTACCGAAGAGGATATGGCCGAACTGGCGATACTGACAAAAAAGCTCGACTTCAAACTGGAACAGATACAGGACTTTACTCCTACACCTATGACCTTAGCGACGGAAATGTACTACACCGGCTACCATCCTTATACGCTTCAGCCTGTATATACAGCCATCAAGAAAGAAGAAAAGATGCGCCAGCACATGTTTTTCTTCTGGTACAAACGGGAAGAAGCCGACAAGATCCGTCGCGAGCTACACCGAATCGGACGACCGGATCTCATTGCCAAGCTGTTCGATCGCACTACTTCCTCTCGCAACGATCGCCATACTCCTCCGTCCACGCAACCTCGCAAAAGCAAAAGCAAAAGCCGCCATTCT","9.90","23.11","73036","MAKHHPLTDWLPTSKKEMEAKGWDEADVILFSGDAYVDHPSFGAAVVGRILEAEGLRVAIVPQPNWRDDLRDFRKLGRPRLFFGVSAGAMDSMVNKYTANRRLRSEDAYTPDRRSDMRPDYPTIVYTRILKELFPDVPVIVGGIEASLRRLTHYDYWQDKLLPGILYQSGADLLIYGMGELPLHEIAQRLIAGEPFDSLKSIRQIAYLVPKGKTPVPCENDRHLFSHEECLSDKRKQAQNFREIEIQSNRYEADRILQAVGDSTIVVNPPFPPMSTAQIDQSFDLPYTRLPHPRYKGKIISAYEMIKHSVNVHRGCFGGCAFCTISAHQGKFIASRSEASVLREVKEITEMEDFKGYLSDVGGPSANMYKMQGYDLSICKRCKKPSCIHPNVCPNLNADHRPLLDLLRRIDKNPKIKKSFIGSGVRMDLLLHNYKDKVLKKAADEYTEDLIVKHVSGRLKVAPEHSSDRVLNLMRKPPFRQFAEFTKRFQRINEAHGLRQQLIPYFISSHPGCTEEDMAELAILTKKLDFKLEQIQDFTPTPMTLATEMYYTGYHPYTLQPVYTAIKKEEKMRQHMFFFWYKREEADKIRRELHRIGRPDLIAKLFDRTTSSRNDRHTPPSTQPRKSKSKSRHS","994410 992509","TIGR ID: PG0934","conserved hypothetical protein (possible Fe-S oxidoreductase family 2)","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 10-623 are 39% similar to (gi:9911125) hypothetical 83.5 kda protein in metc-sufi intergenic region of E.coli, residues 10-631 are 39% similar to gb|AAG08313.1|AE004906_1 conserved hypothetical protein of Pseudomonas aeruginosa, residues 10-633 are 38% similar to gb|AAF94861.1| conserved hypothetical protein of Vibrio cholerae.This sequence corresponds to BT0254.","
InterPro
IPR002052
Domain
N-6 Adenine-specific DNA methylase
PS00092\"[265-271]FN6_MTASE
InterPro
IPR005839
Family
Protein of unknown function UPF0004
PTHR11918\"[292-383]T\"[410-549]TUPF0004
PS01278\"[310-330]FUPF0004
InterPro
IPR006638
Domain
Elongator protein 3/MiaB/NifB
SM00729\"[306-565]TElp3
InterPro
IPR007197
Domain
Radical SAM
PF04055\"[310-525]TRadical_SAM
InterPro
IPR013704
Domain
Radical SAM N-terminal
PF08497\"[10-309]TRadical_SAM_N
noIPR
unintegrated
unintegrated
SSF102114\"[269-549]TSSF102114


","BeTs to 5 clades of COG1032COG name: Fe-S oxidoreductases family 2Functional Class: CThe phylogenetic pattern of COG1032 is AMTK--VCe-r----------Number of proteins in this genome belonging to this COG is 2","***** IPB001861 (Uncharacterized protein family UPF0004) with a combined E-value of 3.9e-09. IPB001861D 308-353 IPB001861G 459-478 IPB001861H 502-539","Residues 300-556 are 42% similar to a (PROTEIN BIOSYNTHESIS OXIDASE COPROPORPHYRINOGEN III) protein domain (PD000690) which is seen in YGIQ_ECOLI.Residues 10-209 are 57% similar to a (PROTEIN MJ1155 METC-SUFI INTERGENIC) protein domain (PD040249) which is seen in YGIR_ECOLI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Dec 2 16:02:38 2003","Tue Dec 2 16:02:22 2003","Tue Jan 2 14:34:45 MST 2001","Tue Dec 2 16:02:22 2003","Tue Dec 2 16:02:22 2003","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Dec 2 16:02:22 2003","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540690","","","","","","1","","","PG0934" "PG0834","995213","994392","822","ATGATCGTTTTTCCCAATGCAAAAATCAACCTCGGCTTGCAGGTTGTAGCCAAGCGAGCGGACGGCTACCACAACATCGAGACAGTCTTCTATCCGATCCCGCTGACCGATGCTTTGGAGATCGAAGTACGAGAGGATACTTGCGACCGTCTTTCCGTCCATGGCGTTCCCATTGATGCTGCAACGGAGGATAATTTGGTTATGAAAGCGGTCATGGCTCTTCGCCGAAAATTTGATTTTCCCCCACTGACTATCGAGCTTATCAAGCACATTCCATCAGGAGCAGGTTTGGGAGGAGGTTCTTCGAATGCGTCTTTCATGCTGAAGTTGGTGAGGGACTATTTCTCTCTACCGATCGATGACGAAGAATTGGCGGCAATAGCACTGACGATCGGTGCCGATTGTCCTTTTTTCGTAGGAAATCGGCCGGTATTAGCCACCGACCTTGGCCAAGTCTTTACTCCGCTACCCAATTTTTCTCTGTCCGGTCTCCATATCGCTATAGTAAAACCACCCATCCATATCAACACAGCAGCTGCATACAAAGGTCTCAAGCATGTGGGCAAACGAGAGACAATGCCGGATGAGATTGTTTACATGCCCGTAGAAGAATGGAGAGGGAAATTGGTGAACGATTTCGAAGAAAGCCTTTTCCCTGAACATCCTCGACTTGCCGAACTAAAAGAAATGCTCTATCGGTCGGGGGCTTTGTACGCTGCAATGTCCGGTTCCGGATCTGCACTATTCGGTCTTTTCCGGGAAAAGCCTCAGCTCGATAAGGCTGCTATCACCGACTGCTTCCGATGGCAAAGCATCATCCCC","5.70","-5.45","30223","MIVFPNAKINLGLQVVAKRADGYHNIETVFYPIPLTDALEIEVREDTCDRLSVHGVPIDAATEDNLVMKAVMALRRKFDFPPLTIELIKHIPSGAGLGGGSSNASFMLKLVRDYFSLPIDDEELAAIALTIGADCPFFVGNRPVLATDLGQVFTPLPNFSLSGLHIAIVKPPIHINTAAAYKGLKHVGKRETMPDEIVYMPVEEWRGKLVNDFEESLFPEHPRLAELKEMLYRSGALYAAMSGSGSALFGLFREKPQLDKAAITDCFRWQSIIP","995213 994392","Isopentenyl monophosphate kinase is the last enzymne of the deoxyxyulose-5-phosphate pathway of isoprenoid biosynthesis. Isopentenyl phosphate + ATP = isopentenyl diphosphate + ADP.TIGR ID: PG0935","isopentenyl monophosphate kinase","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 7-260 are 28% similar to dbjBAB03780.1 isopentenyl monophosphate kinase of Bacillus halodurans, residues 7-249are 27% similar to embCAB84355.1 hypothetical protein NMA1092 of Neisseria meningitidis, residues 7-260 are 29% similar to (gi:586879) isopentenyl monophosphate kinase of Bacillus subtilis.This protein is similar to CT804, a predicted conserved hypothetical protein (YchB/YabH family) from Chlamydia trachomatis.","
InterPro
IPR004424
Family
4-diphosphocytidyl-2C-methyl-D-erythritol kinase
PIRSF010376\"[4-273]TIspE
PTHR20861:SF2\"[41-254]TIspE
TIGR00154\"[2-273]TispE
InterPro
IPR006204
Domain
GHMP kinase
PF00288\"[84-142]TGHMP_kinases_N
InterPro
IPR013750
Domain
GHMP kinase, C-terminal
PF08544\"[204-262]TGHMP_kinases_C
InterPro
IPR014721
Domain
Ribosomal protein S5 domain 2-type fold
G3DSA:3.30.230.10\"[1-158]TRibosomal_S5_D2-type_fold
noIPR
unintegrated
unintegrated
PTHR20861\"[41-254]TPTHR20861
SSF54211\"[1-156]TSSF54211
SSF55060\"[161-262]TSSF55060


","BeTs to 9 clades of COG1947COG name: Uncharacterized ACR, YchB/YabH familyFunctional Class: SThe phylogenetic pattern of COG1947 is -----qvcebrhuj---li--Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 7-251 are 30% similar to a (PROTEIN INTERGENIC REGION CONSERVED) protein domain (PD008614) which is seen in YABH_BACSU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Thu Jul 24 13:53:31 2008","Thu Jan 11 11:43:07 2001","Thu Jul 24 13:53:31 2008","Thu Jan 11 11:43:07 2001","","Fri May 4 13:11:30 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Fri Apr 7 10:31:43 MDT 2000","Thu Jul 24 13:53:31 2008","-42% similar to PDB:1UEK Crystal structure of 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase (E_value = 4.0E_15);-49% similar to PDB:1OJ4 TERNARY COMPLEX OF 4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL KINASE (E_value = 4.8E_13);","","","Residues 82 to 256 (E-value = 4.6e-24) place PG0834 in the GHMP_kinases family which is described as GHMP kinases putative ATP-binding protein (PF00288)","Fri May 4 13:11:30 MDT 2001","34540691","","","Lange,B.M. and Croteau,R. 1999. Isopentenyl diphosphate biosynthesis via a mevalonate-independent pathway: isopentenyl monophosphate kinase catalyzes the terminal enzymatic step. Proc. Natl. Acad. Sci. U.S.A. 96 (24), 13714-13719. PubMed: 10570138:","","Thu Jul 24 13:53:31 2008","1","","","PG0935" "PG0835","996543","995245","1299","ATGAAAACTTGGCAATCCATTCTCGGATTCAATCCCGAGAAGCACTCCGTCCGAACGGAGTTTATTGCAGGGGTGACCACTTTCCTGACCATGAGTTACATCTTGGCGGTCAACCCTGATATTCTTGCTGCAGCAGGGATGGACAAAGGAGCCGTATTCACGGCCACGGCACTTTCTTCGGCCGTGGCTACGCTGCTGATTGCATTTTTGGCCAAGCTGCCCTTCGCTCAAGCTCCGAGCATGGGGATCAACGCTTTCTTCGCCTTCACTCTGGTTCAAGGCATGGGCTACTCTTGGCAGACTGCACTGGCTGCCGTCTTTGTGGAGGGGATCGTCTTCATCCTGCTGACGGCATTCAATATCCGTGAGAAGATCGTCGATTGCATTCCTTACAATCTGCGCTATGCTATCTCGGCCGGTATCGGCATGTTTATCGCTTTCATCGGACTGAAGAACGCCGGTATTATCGTATCCCATCCGGCTACATTGGTCGCTCTCGGGCCTTTCACTCCGATATTCTTGCTGGCCATCCTCGGTATCATCCTCAGCGCGGCACTGGTCGTGCGCAAGGTGCGAGGGGCTTTGTTCTACAGTATCGCCATTTGTACGATCGTCGGCATTCCGCTGGGAGTGACAGCCATTCCCGAAGGATTTGCCCCTATCTCCTCTCCGCAGAGCCTAAGTCCCACTTTCCTGCAAATGGATTTCGCCCCTCTCCTTTCGTTCGATATGGCTATGACGATATTCGCTCTCGTCTTCATGGATATTTTCAATACGATCGGCACACTGATCGGAGCAGCTGCCAAGACTGAAATGATGGACGAAAAAGGGAATGTCAAGAATATCAAGCAGGCCATGATGGCCGATGCCATCGGTACAAGCCTCGGTGCCATACTGGGCACCTCCACGGTAACTACTTATGTGGAGAGCGGATCGGGCATTGCCGAAGGAGGACGAACGGGTTTGACGGCATTGGTTACGGGCAGCTTTTTCCTGTTGGCTCTTTTTCTGTCGCCCCTGTTTCTCCTTGTCCCAGGTGCAGCTACGACAGGTGCTCTTGTAATGGTAGGGGTATTTATGCTCGGATCCATTTCGATGATCGATTTGTCCGACCTGTCCGAGACTTTTCCCGTCTTCATCACACTGCTGACAATGGTACTCACCTACTCTATCGCAGAGGGAATGGCCTTGGGGATGTTGGCATTCGTCTTTGTCAAACTCTTGTCCGGACAATACCGCAGTATATCCCTGCCTCTTTACATTCTGGCTGTTCTTTTCATCCTGCGCTATGCCTTTGCA","6.50","-0.62","45772","MKTWQSILGFNPEKHSVRTEFIAGVTTFLTMSYILAVNPDILAAAGMDKGAVFTATALSSAVATLLIAFLAKLPFAQAPSMGINAFFAFTLVQGMGYSWQTALAAVFVEGIVFILLTAFNIREKIVDCIPYNLRYAISAGIGMFIAFIGLKNAGIIVSHPATLVALGPFTPIFLLAILGIILSAALVVRKVRGALFYSIAICTIVGIPLGVTAIPEGFAPISSPQSLSPTFLQMDFAPLLSFDMAMTIFALVFMDIFNTIGTLIGAAAKTEMMDEKGNVKNIKQAMMADAIGTSLGAILGTSTVTTYVESGSGIAEGGRTGLTALVTGSFFLLALFLSPLFLLVPGAATTGALVMVGVFMLGSISMIDLSDLSETFPVFITLLTMVLTYSIAEGMALGMLAFVFVKLLSGQYRSISLPLYILAVLFILRYAFA","996543 995245","TIGR ID: PG0936","conserved hypothetical protein (possible sulfate permease)","Inner membrane, Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 16-433 are 44% similar to gb|AAF95422.1| conserved hypothetical protein of Vibrio cholerae, residues 1-432 are 41% similar to gb|AAB98314.1| conserved hypothetical protein of Methanococcus jannaschii, residues 16-429 are 44% similar to >dbj|BAA88496.1| hypothetical protein of Pseudomonas fluorescens.","
InterPro
IPR006043
Family
Xanthine/uracil/vitamin C permease
PTHR11119\"[5-428]TXant/urac/vitC
PF00860\"[18-397]TXan_ur_permease
noIPR
unintegrated
unintegrated
PTHR11119:SF9\"[5-428]TPTHR11119:SF9


","BeTs to 8 clades of COG2252COG name: PermeasesFunctional Class: RThe phylogenetic pattern of COG2252 is -m-k--v-EB-huj--Ol---Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 18-159 are 48% similar to a (PROTEIN INTERGENIC REGION CONSERVED) protein domain (PD005770) which is seen in O50993_BORBU.Residues 161-432 are 39% similar to a (PROTEIN INTERGENIC REGION CONSERVED) protein domain (PD005952) which is seen in Y326_METJA.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Jan 11 11:47:58 2001","Thu Jan 11 11:47:58 2001","Thu Jan 11 11:47:58 2001","","Tue Apr 3 17:35:59 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 97-413 are 23% similar to PG0019, a sulfate transporter.","Tue Apr 3 17:35:59 MDT 2001","Tue Apr 3 17:35:59 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 18 to 397 (E-value = 3.6e-17) place PG0835 in the Xan_ur_permease family which is described as Permease family (PF00860)","Tue Apr 3 17:35:59 MDT 2001","34540692","","","","","","1","","","PG0936" "PG0836","997286","996567","720","ATGAAAAAAGCTATTCTTTCCGGAGCGGCCTTGCTCCTCGGCCTATGTGCCAACGCACAAAACGTGCAGTTGCACTACGATTTCGGTCATTCCATCTACGACGAACTAGATGGACGTCCCAAACTGACTACCACAGTGGAAAACTTCACACCCGACAAATGGGGAAGCACCTTCTTCTTCATCGACATGGATTACACGGGCAAGGGTATCCAGTCGGCCTATTGGGAGATTTCGCGCGAACTGAAGTTTTGGCAAGCTCCCGTTTCCATTCATTTGGAGTACAACGGAGGCCTCTCCACAAGCTTTACTTTCGGACACGATGCTCTAATCGGTGCCACCTACACCTACAACAACCCCTCCTTTACACGTGGATTTACGATCACGCCCATGTACAAGCATCTGGGTGCGCACGACTTCCACACCTATCAGATCACCGGCACTTGGTACATGCACTTTCTGGACGGTCTGCTTACCTTCAACGGCTTCCTCGATCTTTGGGGTTTCCCCCAAGAGAACCCAATCGGGGGCCCTGTGCTCAAAGAAGGGGATAAGTTCGTATTCCTGTCCGAACCGCAGTTCTGGATCAACCTCAATCGCATCAAAGGCATCGACAAGGATTTCAATCTCAGCATAGGGACAGAGATGGAAATCAGCAGGAACTTCGCTCGCATGGACAAATTCTCCTGCATCCCTACTCTTGCGGTCAAATGGACTTTCAAC","6.30","-3.17","27395","MKKAILSGAALLLGLCANAQNVQLHYDFGHSIYDELDGRPKLTTTVENFTPDKWGSTFFFIDMDYTGKGIQSAYWEISRELKFWQAPVSIHLEYNGGLSTSFTFGHDALIGATYTYNNPSFTRGFTITPMYKHLGAHDFHTYQITGTWYMHFLDGLLTFNGFLDLWGFPQENPIGGPVLKEGDKFVFLSEPQFWINLNRIKGIDKDFNLSIGTEMEISRNFARMDKFSCIPTLAVKWTFN","997286 996567","Veith et al. (2002) identified this protein by two-dimensional gel electrophoresis and peptide mass fingerprinting of outer membranes prepared from strain W50. They present the following results: This protein is strongly predicted by PSORT to be located in the outer membrane. The presence of few Cys residues support this conclusion. The peptide mass data indicate that the mature N-terminus of this protein is pyroglutamate.TIGR ID: PG0937","probable integral outer membrane protein P26","Outer membrane, Cytoplasm, Extracellular","No hits in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-19]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Thu Feb 7 17:25:37 2002","Mon Feb 11 12:25:12 2002","Thu Jan 11 11:49:07 2001","Thu Jan 11 11:49:07 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 7 17:25:37 2002","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Feb 7 17:25:37 2002","34540693","","Veith,P., Talbo,G., Slakeski,N., Dashper,S., Moore,C.,Paolini,R., Reynolds,E., Major outer membrane proteins and proteolytic processing of RgpA, and Kgp of Porphyromonas gingivalis W50, Biochem J. 2002 (in press).","","Thu Feb 7 17:25:37 2002","","1","","","PG0937" "PG0838","1000477","997289","3189","GTGCAAGCAGCTCCTCAAGGGGGGATTTACAACTACTTTCACTCCTTACTGCCACCCCTTTCCCTCGCTCCTTTTTTGCCAAGAACTCCTCTTCCCTCCACCTCCTTATTTTGCAAAGGTCTCAAAAAGGAGAGATACAAGCCACGGTTTCGGCCGCGGGAATGCCATTGTTCGGTGGAGAATCTGCATCTCGGCCATGAAATGCAGAATTCCCACCGGACAATCTGCAAATCGGCACTGCAATTACTTCCTCCAAGTTGGAGCGACCCTTTTCGGCGACGAGATGCAGATTTTCCACCGAACAGCCCTTCTCCCGCTCGGCCATCGTCCGAAAACGCAAGCAATCGTGCTAAAGAAAAAGTACATTTGTCTCCGATTATCGCACTCTGCATTTCGCATCATACGAGTCAAGAAAAACTTTTTACACAACACCTGATGAATATGCCCACCGGGGAAACCCACAAGTCTCCCCCTTCTTCCTCGCATCGAGGACTGTCCGATGCCGAAGTCTTACATAGCCGAGCTACCCACGGCTCGAACGAACTGACTCCCCGCGAGCGCGAATCGCTCTGGAGCAAGTTTTTCGAGAAGTTCAAAGATCCCATCATCATCATCCTGCTCGTGGCCATGGTGCTTTCGTTTGCCGTGGCTTGCTATCACTACTTCACGGGCGGAGAGGGCGTCTCCGTCTTTCTGGAGCCGACAGGGGTGCTGCTCGCTGTCGTATTGGCCACGGGAGTAGCCTTTTTCTTCGAGATGAAATCCGAGAAAGAGTTCGAGATCCTGAATCAGGTCAATGAAGACATATTATATAAGGTATATCGCAACGGCATGATCTGCAGGGTGCTCAAAAAAGAAATCGTCGTAGGCGACCTGGTCGTTCTGGAAACGGGAGAGCAAATTCCGGCCGACGGCCGACTCATCGAAGCCATCTCGCTACAGATCGACGAATCCAGCCTGACGGGCGAACCCGTTGTAAACAAAACCACTGACCGGCAGGACTTCGACGCGGAAGCCACCTACCCCTCCGATTACATCTGCCGAGGCACCACCATTCTGGACGGCCACTGCACTTTCAGGGTGGAAAAGGTGGGCGACGCCACGGAATACGGACGGGTATTCGAGGGTGCCCGACCAGACAACAGCGTACAGACGCCCCTGAACAGACAGCTCGACCATCTGGCCGGCCTGATCACGAACGTCAGCTATAGCATAGCAGCCTTGGTACTCATCGGTAGCATCATCATGTACGCCGCCAACGGCGGATTCTTCCCCTTCGACTGGGCGTATGCCCTCTCCTTTTTCCTCAATAAGATCATGATAGCCGTCACGGTCATCGTCGTAGCCGTCCCCGAGGGATTGCCCATGAGCGTGACGCTGAGTCTGGCCTACAGCATGCGCAGCATGATGAAGACCAACAATCTAGTACGAAAGATGCATGCTTGCGAAACCATGGGGGCAGCTACCGTCATCTGCACGGACAAGACGGGAACCCTGACACAGAATCGCATGGCCGTGGCAGACACATACTTCGAGCCAGAGCATGAGGCAGATTCTTCGCTTCTGGCCGAAGCCATGGCCGCCAACTCCACAGCCTATCTGGACTGCTCGGACGAAAAGTCGATACGTCCCCTCGGCAACCCCACCGAAGGAGCCTTGCTCCTATGGCTCAGAGAGAGGGGAATAAACTATCTGACCGTGCGCGAAGCCTGCCCCCTACTCCTGCAACTGACCTTCTCCACCGAGCGCAAATACATGGCCACGGTAGTCCGATCGGCTTCCCTCGGCAAGCCTGTACTCTGGGTCAAAGGCGCACCGGAGATCGTGCTCGGCTTCTGCTCCTTGCCCGATGAAGAAAAATTCGACTCCTATACCCGAAAGCTCGCCGAATATCAGGGCAAGGCAATGCGTACCATCGGATTTGCATACAAGGAGCTGTCCTCCGACAAGGAGCAGGTATTTGCCAATGGGCGTCTCCACGTGCATGACCTCCGCTTCATGGGTATAGTCGGCATAGCCGATCCCATTCGCTCCGACGTTCCCGAAGCGATCAGCGACTGTATGAAGGCCGGCATTCAGGTGAAAATCGTAACGGGCGATACACCGGGTACCGCCCGGGAGATCGGTCGCCAAATAGGGCTGTGGGACGAAAGCTGTACGGAGCGGAATATGATCACCGGGTCGGATTTCGCAGCCCTAACCGACGAGGAACTGCGCCCTCGGATAGGCGAACTGCGTATCATGTCCCGCGCTCGTCCGATGGACAAGGAAAGGCTTGTACGCCTGCTGCAGGAAGCTCACGAAGTGGTGGCCGTGACGGGCGACGGCACGAACGACGCTCCTGCACTCAACCGCGCACAGGTGGGCCTCTCGATGGGCGATGGCACTGCCGTAGCCAAAGAGGCGAGCGACATCACCATTCTGGACAATTCTTTCAGCAGCATTGCCAAAGCCGTTATGTGGGGACGATCGCTTTATCGGAATATCCGCCGTTTTATCCTCTTTCAGATGACCATCAACGTCGTGGCCTGTATCATCGTTCTGATCGGCGCATTTGTGGGTACGGAGTCGCCCCTTACCGTGACGCAAATGCTGTGGGTCAATCTCATCATGGACACTTTCGCCGCCTTGTCCTTGGCTTCGCTCCCTCCCGACAAGGGTGTGATGAAGGAGCAACCCCGCCGGCAGGACGATGCCATCATCAACCCGCTGATGGCACGACGAATTTTCGGGCTTGGCGGAGGATTCGTTTTGCTGCTCTTCAGCCTGATCCAATACTTCAAACATGCCGAACTCAACAGCATGATGGACTTCCACCTCGGTGCATGGGCTACTACCCTTTTCGACTTCCGGCCTGTAGAGAATGCCCTTTCCGACTTTGAGCTGAGTGCATTCTTCTCCATATTCGTTTTCCTCCAATTCTGGAATATGTTCAACGCCAAAGCATTTATGACAGGGCGGAGTGCCCTGCACCGGCTGTGGAAATGTCGCAACTTCGTCCTCATCGCCCTGCTGATTCTTATAGGACAAATCATCATCACGACTTTTGGCGGAGGCATGTTCCGCGTAGTACCCCTTGCCCCGATGGACTGGATTCTCATCATCCTCGCGACGAGTCTGATCCTCTGGTTGCACGAATTGGAACGCATATTGCCTACTTTTGCAAATCATCTTATTCATAATCGACAA","6.90","-1.25","118434","VQAAPQGGIYNYFHSLLPPLSLAPFLPRTPLPSTSLFCKGLKKERYKPRFRPRECHCSVENLHLGHEMQNSHRTICKSALQLLPPSWSDPFRRRDADFPPNSPSPARPSSENASNRAKEKVHLSPIIALCISHHTSQEKLFTQHLMNMPTGETHKSPPSSSHRGLSDAEVLHSRATHGSNELTPRERESLWSKFFEKFKDPIIIILLVAMVLSFAVACYHYFTGGEGVSVFLEPTGVLLAVVLATGVAFFFEMKSEKEFEILNQVNEDILYKVYRNGMICRVLKKEIVVGDLVVLETGEQIPADGRLIEAISLQIDESSLTGEPVVNKTTDRQDFDAEATYPSDYICRGTTILDGHCTFRVEKVGDATEYGRVFEGARPDNSVQTPLNRQLDHLAGLITNVSYSIAALVLIGSIIMYAANGGFFPFDWAYALSFFLNKIMIAVTVIVVAVPEGLPMSVTLSLAYSMRSMMKTNNLVRKMHACETMGAATVICTDKTGTLTQNRMAVADTYFEPEHEADSSLLAEAMAANSTAYLDCSDEKSIRPLGNPTEGALLLWLRERGINYLTVREACPLLLQLTFSTERKYMATVVRSASLGKPVLWVKGAPEIVLGFCSLPDEEKFDSYTRKLAEYQGKAMRTIGFAYKELSSDKEQVFANGRLHVHDLRFMGIVGIADPIRSDVPEAISDCMKAGIQVKIVTGDTPGTAREIGRQIGLWDESCTERNMITGSDFAALTDEELRPRIGELRIMSRARPMDKERLVRLLQEAHEVVAVTGDGTNDAPALNRAQVGLSMGDGTAVAKEASDITILDNSFSSIAKAVMWGRSLYRNIRRFILFQMTINVVACIIVLIGAFVGTESPLTVTQMLWVNLIMDTFAALSLASLPPDKGVMKEQPRRQDDAIINPLMARRIFGLGGGFVLLLFSLIQYFKHAELNSMMDFHLGAWATTLFDFRPVENALSDFELSAFFSIFVFLQFWNMFNAKAFMTGRSALHRLWKCRNFVLIALLILIGQIIITTFGGGMFRVVPLAPMDWILIILATSLILWLHELERILPTFANHLIHNRQ","1000477 997289","Several hit in BLAST to plants.TIGR ID: PG0938","calcium ion-transporting ATPase","Inner membrane, Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 167-981 are 33% similar to emb|CAB79748.1| Ca2+-transporting ATPase-like protein of Arabidopsis thaliana, residues 163-1052 are 30% similar to gb|AAC28745.1| putative plasma membrane calcium ion-transporting ATPase of Entamoeba histolytica,residues 177-1056 are 31% similar to emb|CAA68234.1| calmodulin-stimulated calcium-ATPase of Brassica oleracea.This sequence is similar to BT2541.","
InterPro
IPR000695
Family
H+ transporting ATPase, proton pump
PR00120\"[624-642]T\"[773-789]T\"[804-829]THATPASE
InterPro
IPR001757
Family
ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter
PR00119\"[316-330]T\"[492-506]T\"[668-679]T\"[690-700]T\"[773-792]T\"[796-808]TCATATPASE
PTHR11939\"[164-409]T\"[436-895]TCATION-TRANSPORTING ATPASE
TIGR01494\"[428-506]T\"[744-865]TATPase_P-type: ATPase, P-type (transporting
PS00154\"[494-500]?ATPASE_E1_E2
InterPro
IPR004014
Domain
ATPase, P-type cation-transporter, N-terminal
PF00690\"[146-218]TCation_ATPase_N
InterPro
IPR005834
Domain
Haloacid dehalogenase-like hydrolase
PF00702\"[488-796]THydrolase
InterPro
IPR006408
Family
Calcium-translocating P-type ATPase, PMCA-type
TIGR01517\"[118-1054]TATPase-IIB_Ca: calcium-translocating P-type
InterPro
IPR008250
Domain
E1-E2 ATPase-associated region
PF00122\"[272-484]TE1-E2_ATPase
InterPro
IPR013248
Family
Shr3 amino acid permease chaperone
SM00786\"[353-532]Tno description
noIPR
unintegrated
unintegrated
G3DSA:1.20.1110.10\"[747-1051]Tno description
G3DSA:2.70.150.10\"[142-357]Tno description
G3DSA:3.40.1110.10\"[502-675]Tno description
PTHR11939:SF70\"[164-409]T\"[436-895]Tgb def: Putative calcium-transporting ATPase
tmhmm\"[202-222]?\"[228-248]?\"[404-424]?\"[430-464]?\"[832-854]?\"[864-884]?\"[909-927]?\"[962-980]?\"[1001-1021]?\"[1027-1045]?transmembrane_regions


","BeTs to 9 clades of COG0474COG name: Cation transport ATPasesFunctional Class: PThe phylogenetic pattern of COG0474 is -mT-Yq-CebR---gp-----Number of proteins in this genome belonging to this COG is 1","***** IPB001757 (E1-E2 ATPases phosphorylation site) with a combined E-value of 3e-66. IPB001757A 450-486 IPB001757B 488-500 IPB001757C 603-613 IPB001757D 674-714 IPB001757E 747-756 IPB001757F 770-793","Residues 636-714 are 45% similar to a (ATPASE HYDROLASE TRANSMEMBRANE PHOSPHORYLATION) protein domain (PD000138) which is seen in Q64568_RAT.Residues 432-506 are 56% similar to a (ATPASE HYDROLASE TRANSMEMBRANE PHOSPHORYLATION) protein domain (PD000466) which is seen in Q16817_HUMAN.Residues 159-217 are 42% similar to a (ATPASE HYDROLASE TRANSMEMBRANE PHOSPHORYLATION) protein domain (PD005738) which is seen in Q95060_TRIVA.Residues 725-791 are 59% similar to a (ATPASE HYDROLASE TRANSMEMBRANE PHOSPHORYLATION) protein domain (PD000121) which is seen in Q27642_ENTHI.Residues 795-869 are 60% similar to a (ATPASE HYDROLASE TRANSMEMBRANE PHOSPHORYLATION) protein domain (PD000140) which is seen in O88863_MOUSE.Residues 268-331 are 46% similar to a (ATPASE HYDROLASE TRANSMEMBRANE PHOSPHORYLATION) protein domain (PD000132) which is seen in O66938_AQUAE.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Wed Dec 17 11:20:13 2003","Thu Jan 11 12:04:39 2001","Wed Dec 17 11:20:13 2003","Thu Jan 11 12:04:39 2001","Tue Apr 3 17:57:19 MDT 2001","Tue Apr 3 17:57:19 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 273-843 are 22% similar to PG1434, a cation-transporting ATPase.Short segments/domains show strong similarity: residues 1-41 are identical or virtually identical to the first 41 residues of PG1086, PG1229, PG0169.1, PG1100, PG0885, PG1895.1, and PG0685, all hypothetical proteins.","Tue Apr 3 17:57:19 MDT 2001","Tue Apr 3 17:57:19 MDT 2001","-47% similar to PDB:1IWO Crystal structure of the SR Ca2+-ATPase in the absence of Ca2+ (E_value = 1.8E_84);-47% similar to PDB:1KJU Ca2+-ATPase in the E2 State (E_value = 1.8E_84);-47% similar to PDB:1SU4 Crystal structure of calcium ATPase with two bound calcium ions (E_value = 1.8E_84);-47% similar to PDB:1T5S Structure of the (SR)Ca2+-ATPase Ca2-E1-AMPPCP form (E_value = 1.8E_84);-47% similar to PDB:1T5T Structure of the (SR)Ca2+-ATPase Ca2-E1-ADP:AlF4- form (E_value = 1.8E_84);","","","Residues 146 to 218 (E-value = 4.1e-18) place PG0838 in the Cation_ATPase_N family which is described as Cation transporter/ATPase, N-terminus (PF00690)Residues 236 to 484 (E-value = 1.1e-45) place PG0838 in the E1-E2_ATPase family which is described as E1-E2 ATPase (PF00122)Residues 488 to 796 (E-value = 1.2e-16) place PG0838 in the Hydrolase family which is described as haloacid dehalogenase-like hydrolase (PF00702)Residues 891 to 1054 (E-value = 4.5e-05) place PG0838 in the Cation_ATPase_C family which is described as Cation transporting ATPase, C-terminus (PF00689)","Wed Dec 17 11:20:13 2003","34540694","","","","","","1","","","PG0938" "PG0839","1001281","1000505","777","ATGGAAGAGGTATCTCCCGACCACAGCACCATCAGTCGATTTCGTTCGGCACTGACAGAGTTGGGGCTCATGGACAAACTATTGGCGCAGTTTAACAAACAACTTTCCCGCCATCACATTTCGGTCAGGGAAGGGGTGCTTGTCGATGCAAGCCTTGTGGAGACGCCGCATAAACCCAACGGAAGCATTACGATTGAAGTCGCAGACGACAGAGAAGACAATCGGAGCGAGGAGGAAAAAGAGGCAGAGGAGGATTATCAAAAACAGGTTGTCCGTCAGCGTAAAGGGACGGATGAAGAAGCCCGTTGGGTTTACAAACAAAAGCGTTATCACTACGGATACAAAAAGCATTGTCTGACCAATGTTCAAGGCATTGTTCAAAAGGTGATAACGACAGCAGCGAATCGCAGTGACACGAAGGAGTTTATTCCGCTATTGCAGGGTGCAAACATACCTCAAGGCACAGCCGTCTTCGCGGACAAAGGATATGCTTGCGGGGAAAATCGTTCCTACCTGCAAACCCATCACCTTCAAGACGGCATCATGCACAAGGCACAACGCAACAGGGCATTGACCGAGGAAGAGAAGCAAGGAAACAAAGCAATCGGTCCGATACGGAGCACCATCGAACGCACCTTTGGCAGTATTCGCCGGTGGTTTCATGGCGGACGATGTCGATACCGGGGACTTGCCAAGACCCATACTCAAAACATTCTTGAAAGCATCGCCTTTAATTTATACAGGACCCCGGGGATAATTATGTCCTCATCTCTAGGA","9.80","8.52","29537","MEEVSPDHSTISRFRSALTELGLMDKLLAQFNKQLSRHHISVREGVLVDASLVETPHKPNGSITIEVADDREDNRSEEEKEAEEDYQKQVVRQRKGTDEEARWVYKQKRYHYGYKKHCLTNVQGIVQKVITTAANRSDTKEFIPLLQGANIPQGTAVFADKGYACGENRSYLQTHHLQDGIMHKAQRNRALTEEEKQGNKAIGPIRSTIERTFGSIRRWFHGGRCRYRGLAKTHTQNILESIAFNLYRTPGIIMSSSLG","1001281 1000505","Member of the IS5 family of elements. Reproduces the middle and C-terminal domains of full-length ISPg1 elements (e.g. PG1662).TIGR ID: PG0939","ISPg1 transposase fragment (IS1106-related transposase)","Cytoplasm","PG0839 is equivalent to the previously sequenced AJ130872 and AB015879 in GenBANK. Residues 31-350 are 34% similar to the IS1106 sequence of N.meningitidis (AE002488).","
InterPro
IPR002559
Domain
Transposase, IS4-like
PF01609\"[45-246]TTransposase_11


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 201-259 are 98% similar to a (TRANSPOSASE ORF7 INSERTION SEQUENCE IS1126-LIKE GENE) protein domain (PD187845) which is seen in Q9ZAD0_PORGI.Residues 55-200 are 85% similar to a (TRANSPOSASE PLASMID PROTEIN ELEMENT) protein domain (PD004652) which is seen in Q9ZAD0_PORGI.Residues 8-54 are identical to a (TRANSPOSASE ORF7 INSERTION SEQUENCE) protein domain (PD187846) which is seen in Q9ZA61_PORGI.","","","","","","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","","","","Fri Feb 16 12:09:54 MST 2001","Fri Feb 16 12:09:54 MST 2001","Wed Feb 14 11:46:18 MST 2001","Wed Jan 3 12:09:17 2001","","Wed Feb 14 11:44:01 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG0839 is is virtually identical to PG1087, PG0763, PG1755, PG0686, PG0756, PG1798, PG1230, PG1919, PG0044, PG0689, PG1215, PG1665, PG184, PG1895, all ISPg1 fragments that reproduce the middle and C-terminal residues of PG1267, PG0169, PG1050, PG1062, PG0740, PG0918, PG1662, PG1422, PG0420, PG0499, PG1099.Also, partial similarities to PG0732, PG0842, PG0883, PG1231, PG0730, PG1159, PG1608.","Fri Feb 16 12:09:54 MST 2001","Wed Feb 14 11:44:01 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 45 to 246 (E-value = 3.7e-36) place PG0839 in the Transposase_11 family which is described as Transposase DDE domain (PF01609)","Thu Jun 14 14:06:13 MDT 2001","","","Hanley,S.A., Aduse-Opoku,J. and Curtis,M.A.A 55-kilodalton immunodominant antigen of Porphyromonas gingivalisW50 has arisen via horizontal gene transferInfect. Immun. 67 (3), 1157-1171 (1999)Maley,J. and Roberts,I.S.Characterisation of IS1126 from Porphyromonas gingivalis W83: a new member of the IS4 family of insertion sequence elementsMicrobiol. Lett. 123 (1-2), 219-224 (1994)Shibata,Y., Hayakawa,M., Takiguchi,H., Shiroza,T. and Abiko,Y.Determination and characterization of the hemagglutinin-associatedshort motifs found in Porphyromonas gingivalis multiple geneproducts. J. Biol. Chem. 274 (8), 5012-5020 (1999)","Knight,A.I., Ni,H., Cartwright,K.A. and McFadden,J.J.Identification and characterization of a novel insertion sequence, IS1106, downstream of the porA gene in B15 Neisseria meningitidis.Mol. Microbiol. 6 (11), 1565-1573 (1992)","Wed Feb 14 11:46:18 MST 2001","Wed Feb 14 11:46:18 MST 2001","1","","","PG0939" "PG0840","1002205","1002597","393","TTGACAGTTGGCGGGATGCAACCAGTATCCATTATGGGCAAACATTTAAACAACTTTGAACGCCTTAGCATCCTTGAGGATTACCTCTCGGGGTCAGATAGCAAAGTAGCCATTGAGCAGAAATATGGTCTAAGTCATGGTCTCATTCGCTCTTGGCTTCGTAAATTTGGACTCGAAGATAAAGTTCATCCAGTCCCAATGAAAGTGTCCCAATCCCCCCAGAGTGAGCTACCCCTGAACGAAAAAGAAGAATTAGAGCAGCTACGTAAAGAAAATCGTGTCCTCAAGAGTCGTCTCAAGCGAGAAGAACTAGGGCATCAAGCCTACAAGCTACTTGTAGAGTTGGCAGAAGAAACCTACGGCATTCAGATACGAAAAAACTCCGAAGCCAAG","9.60","2.96","15024","LTVGGMQPVSIMGKHLNNFERLSILEDYLSGSDSKVAIEQKYGLSHGLIRSWLRKFGLEDKVHPVPMKVSQSPQSELPLNEKEELEQLRKENRVLKSRLKREELGHQAYKLLVELAEETYGIQIRKNSEAK","1002205 1002597","See PG0841 for associated transposase.Member of the IS3 family of insertion elements.TIGR ID: PG0942","ISPg5-related orf-1","Cytoplasm","PG0840 is equivalent to the previously reported gb|AAF69127.1 in GenBANK.Otherwise, no hits in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Fri Feb 9 17:37:12 MST 2001","Fri Feb 9 17:37:12 MST 2001","Fri Feb 9 17:37:12 MST 2001","Tue Dec 19 15:47:09 MST 2000","","","yes","Fri Feb 20 15:41:32 MST 1998","PG0840 is paralogously related to PG1862, PG1797, PG1490, PG1437, PG0033, PG0532, PG0392, PG1246, PG0008 and PG0419, all ORFs associated with ISPg5-related transposases. ","Tue Dec 19 15:47:09 MST 2000","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540695","","Califano,J.V., Kitten,T., Lewis,J.P., Macrina,F.L.,Fleischmann,R.D., Fraser,C.M., Duncan,M.J. and Dewhirst,F.E.Characterization of Porphyromonas gingivalis insertionsequence-like element ISPg5.Infect. Immun. 68 (9), 5247-5253 (2000)20407340","","Fri Feb 9 17:37:12 MST 2001","","1","","","PG0942" "PG0841","1002654","1003589","936","CTGCTTGGCTTTAGCCGTCAGGCCTTTTATAAACGTCATCTCAACGATTTAGCTAGGCACGAGGAGGATGTCCTATGCAGTAGTATCATCCAATATTGTTGGCACTTAAGACAAGCAGAGCACCTACCTCAAGCTGGCTTCCGAGAGCTCATGGTGCTTTGTCAGCAATACTTCGGCCCCAAGTTCACGCTTGGGCGCGATCGCTTTTGCGCCCTACTCAGACGCCATGGTATGATGCTGCGCAAACGGTCTGTGCGCCCTCAGACAACCAACTCTCGGCATAGGCTCTACAAGTATGAAGACCTGCTCAATACAGAGCCTAAGTTTGTGCCTCAAAGACCTGGGGAACTCCTTGTAGCAGACATCACCTACGTGGCTTACCAAGATGGGTTTGCCTATCTCTCCCTACTGACCGATGCCTATAGTCGCTGTATCGTAGGGTATTGCTTACATCCTACCCTAGAGGTTGAAGGCTGTTTGAATGCTCTACATCAAGCCTTTGCTTTCTACGATCAGCATCAAATTGATACGAGCAATATGATTCATCATAGCGACCGAGGCATTCAGTATGCCAGTAAGAGCTACACCGATCTGTTGCATGGGCGAGGCTGTCGCATCAGCATGACTCAGACGGGAGATCCTCTGCATAATGCATTGGCTGAGCGGATGAACAATACGCTCAAGAACTCGTGGCACATCTCCTCTTCGAAGCAGTCTTTTGATCAAGCACTCCTTTCTGTAGACCGAGCCGTGCGCATGTACAACGAGGCGCGTCCACATCAAGCTCTAGGGGCGAAAACGCCTATGCAAGTCATTGCGCCAGAGTCTAAAAATCCGTTACTAACGAGGAGGGAGCATGGGCCAGAGATTGCCCCCGAGCTATACCGAAGGATGAATGTCAGACAAAGAGCTAACTTTGCTCGTGTCAACCGAAAT","10.00","15.47","36207","LLGFSRQAFYKRHLNDLARHEEDVLCSSIIQYCWHLRQAEHLPQAGFRELMVLCQQYFGPKFTLGRDRFCALLRRHGMMLRKRSVRPQTTNSRHRLYKYEDLLNTEPKFVPQRPGELLVADITYVAYQDGFAYLSLLTDAYSRCIVGYCLHPTLEVEGCLNALHQAFAFYDQHQIDTSNMIHHSDRGIQYASKSYTDLLHGRGCRISMTQTGDPLHNALAERMNNTLKNSWHISSSKQSFDQALLSVDRAVRMYNEARPHQALGAKTPMQVIAPESKNPLLTRREHGPEIAPELYRRMNVRQRANFARVNRN","1002804 1003589","One of eleven ISPg5 elements in the genome (see Paralogs). Califano et al. report considerable strain diversity of these (Infect. Immun. 68 (9), 5247-5253 (2000)).Member of the IS3 family of insertion elements. See PG0840 for associated ORF.TIGR ID: PG0943","ISPg5 transposase","Cytoplasm","PG0841 is equivalent to the previously reported gb|AAF69128.1| in GenBANK.Numerous significant hits in gapped BLAST to transposase proteins; e.g. residues 91-213 are 56% similar to transposase homolog (U67062) of Bacteriodes thetaiotaomicrom, residues 64-287 are 32% similar to InsB (AF153317) of Shigella dysenteriae, residues 64-268 are 33% similar to Hp1 (AF081284) of E.coli.","
InterPro
IPR001584
Domain
Integrase, catalytic core
PF00665\"[110-273]Trve
PS50994\"[110-276]TINTEGRASE
noIPR
unintegrated
unintegrated
G3DSA:3.30.420.10\"[113-281]Tno description


","No hit to the COGs database.","***** PF01836 (Transposase) with a combined E-value of 4.3e-23. PF01836B 103-154 PF01836C 181-190 PF01836D 215-222 PF01836E 253-272","No significant hit to the ProDom database.","","Thu Jun 14 14:07:12 MDT 2001","","Thu Jun 14 14:07:12 MDT 2001","Thu Jun 14 14:07:12 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 14:07:12 MDT 2001","Thu Jun 14 14:07:12 MDT 2001","","Mon Jun 18 10:57:16 MDT 2001","Fri Feb 9 16:50:45 MST 2001","Mon Jun 18 11:00:03 MDT 2001","Thu Nov 16 10:39:42 MST 2000","Mon Jun 18 10:57:16 MDT 2001","","yes","Fri Feb 20 15:41:32 MST 1998","PG0841 is paralogously related to PG1861, PG1491, PG0391, PG0418, PG1436, PG1796, PG0034, PG0533, PG1247 and PG0007.","Fri Mar 10 10:57:50 MST 2000","Thu Jun 14 14:07:12 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 110 to 273 (E-value = 5.7e-32) place PG0841 in the rve family which is described as Integrase core domain (PF00665)","Mon Jun 18 10:57:16 MDT 2001","34540696","","Califano,J.V., Kitten,T., Lewis,J.P., Macrina,F.L., Fleischmann,R.D., Fraser,C.M.,Duncan,M.J. and Dewhirst,F.E. Characterization of Porphyromonas gingivalis insertionsequence-like element ISPg5.Infect. Immun. 68 (9), 5247-5253 (2000)","","Thu Nov 16 10:42:28 MST 2000","","1","","","PG0943" "PG0842","1004954","1004415","540","ATGGCATACCAATCCAAGAATACCGATGAGCATGTAACATTTGCAGACGCACTCCTTTCAAAGCGTTATCGCAAAGCACAAAACGACTTCCTCAATCAGGTTGACAGGCTTATCGATTGGCGTCCGATCAGGACGCTGATCAACAAGAAATACACCAAGCGACAAAATGCCATCGGCGCCCCGGCTTATGACGTGATTCTCTTATTCAAGATGTTGCTTCCGAAGACATGGTACAACCTCAGTGATTGTGCTTTGGAGGAGCGCATCAATGATTCAATCACCTTTTCCCGATTCTTGGGGCTGAAGATGGAAGAGGTATCTCCCGACCACAGCACCATCAGTCGATTTCGTTCGGCACTGACAGAGTTGGGTCTCATGGACAAACTGTTGGCGCAGTTTAACAAACAACTTTCCCGCCATCACATTTCGGTAAGGGAAGGGGTGCTTGTCGATGCAAGCCTTGTGGAGACGCCGCACAAACCCAACGAGACCATTGCACAAATCCAGCTCACCAATACCGAACAAGTTTCCTTGTGTTTT","9.20","4.10","20797","MAYQSKNTDEHVTFADALLSKRYRKAQNDFLNQVDRLIDWRPIRTLINKKYTKRQNAIGAPAYDVILLFKMLLPKTWYNLSDCALEERINDSITFSRFLGLKMEEVSPDHSTISRFRSALTELGLMDKLLAQFNKQLSRHHISVREGVLVDASLVETPHKPNETIAQIQLTNTEQVSLCF","1004954 1004415","Member of the IS5 family of elements. Corresponds to the N-terminal portion of full-length ISPg1 elements such as PG1662.TIGR ID: PG0944","ISPg1 fragment (IS1126-related transposase fragment)","Cytoplasm","Several hits in gapped BLAST to previously sequenced IS1126-related transposases from P.gingivalis. Residues 10-158 are 33% similar to TnpA3 from Pseudomonas stutzeri (AF039534).","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 12-109 are 97% similar to a (TRANSPOSASE PROTEIN INSERTION ELEMENT) protein domain (PD007264) which is seen in Q9ZAD0_PORGI.Residues 110-156 are identical to a (TRANSPOSASE ORF7 INSERTION SEQUENCE IS1126-LIKE GENE) protein domain (PD187846) which is seen in Q9ZA61_PORGI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Fri Feb 16 12:42:45 MST 2001","Mon Feb 12 15:48:08 MST 2001","Tue Jan 2 11:42:36 MST 2001","Tue Jan 2 11:36:28 MST 2001","","Mon Feb 12 15:42:36 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG0842 is partially similar to PG0732, PG1662, PG1422, PG1267, PG1062, PG1050, PG0918, PG0740, PG0499, PG0420, PG0169, PG1159, PG1607, PG0884, PG0731, PG1895, PG1919, PG1798, PG1755, PG1665, PG1230, PG1215, PG1184, PG1087, PG0839, PG0763, PG0756, PG0689, PG0686, PG0044, all ISPg1-related transposase sequences. Specifically PG0842 corresponds to the N-terminal portion of full-length ISPg1 elements such as PG1662.","Fri Feb 16 12:42:45 MST 2001","Mon Feb 12 15:42:36 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","Hanley,S.A., Aduse-Opoku,J. and Curtis,M.A.A 55-kilodalton immunodominant antigen of Porphyromonas gingivalisW50 has arisen via horizontal gene transferInfect. Immun. 67 (3), 1157-1171 (1999)Maley,J. and Roberts,I.S.Characterisation of IS1126 from Porphyromonas gingivalis W83: a new member of the IS4 family of insertion sequence elementsMicrobiol. Lett. 123 (1-2), 219-224 (1994)Shibata,Y., Hayakawa,M., Takiguchi,H., Shiroza,T. and Abiko,Y.Determination and characterization of the hemagglutinin-associatedshort motifs found in Porphyromonas gingivalis multiple geneproducts. J. Biol. Chem. 274 (8), 5012-5020 (1999)","","Mon Feb 12 15:48:08 MST 2001","","1","","","PG0944" "PG0843","1006524","1005199","1326","ATGAACAACATTAACACTATCATACAACGCGAATACATGATTCGCGTCCGAAAGAAATCCTTCCTCGTGATGACGATCCTGATGCCCATCCTCTTCGTCGGGCTGGTCTCTCTGCCGATCGTATTGGCGCAGCTCGGAGGCGACATGAAGACCATCGCCATTGCCGACCGCACGGGAGAATACGAGCAGCTATTCAAGGAGAACGACGAATTCCGATTCGTCCATGCCGAGAAGACTGCCGAAGAATACAGGAAAATGGGAGCCGACAAATCAGGCATCGACGCCGTTCTCGAAATCCGTCAGGATTTGCTCGAGGATCCCAACGCCGTGGCCATATACGGTTACAAGCAACTGCCTGCTTCCGTGAGCAATCATATCTCGAGGATCCTGTCCGACTATCTCTCCGACAAAAAGATAGCATCCTACAACATCCCCGACATCAAGCAGATCCTCGCCGACAGCAAGATAGAGCTATCGGTGCATACCTATAAATGGAGCGAGGACGGCACCAACGAACGCACATCGGGTGAATTGGCTTCGGGCATCAGCATGATGATGATGGTAGTCATCTTCTTTCTGATCATGACTTTGGCGGCTATGGTGCAGGCCGGCGTGCTGGAAGAGAAGAAAAACCGGATCATGGAAGTAATGGTGTCCTCCACACGGCCGTTCAACCTGATGATGGGCAAAATCATCGGTATCGGTCTCGTAGGCCTTACGCAGCTCATCTGCTGGGGAGTGCTCACGGTACTGCTGCTGACGGTAGCACAGATCGCCTTCCTCGGCAATCTGTACAGCCCAGAGGCCCTGAGTCGGATGCAGGCTTCCGACATAACGGGCATGGCCTCGTCCATGAATGCAGAGGACTTCGCCGAGATGAAGGAAGTGATGAACATCATCGGGGGCATCAACTTCGGAGAGCTGTTCGTGATGTTTCTCATCTTCTTCATCGGCGGCTACCTGCTCTACTCCTCAATCTTCGCCGTTATCGGATCGATGGTATCGAACGACGAAGACACCAGCCAGTTCATGATGCCTGTGATGATCCTCCTGATGTTCGGCTTCTATGCCGCCTACGGCAGCATGAACAATCCCGAAGGATCGCTCGCATTCTGGTGTTCGCTGATCCCTTTCACTTCCCCCCTTGTGATGATGGTGCGGTTGCCCTACGACGTTCCGCTGTGGCAGGAGTTGCTAAGCATCGGCCTGCTGTACGGATGCTTCGTATTGATGACGTGGATCGGGGCGAAGATTTACCGCGTAGGCGTGCTCATGTACGGCAAGAAGCCATCGATCAAAGAGATCATCCGCTGGATAAACTATAAA","5.20","-5.39","49653","MNNINTIIQREYMIRVRKKSFLVMTILMPILFVGLVSLPIVLAQLGGDMKTIAIADRTGEYEQLFKENDEFRFVHAEKTAEEYRKMGADKSGIDAVLEIRQDLLEDPNAVAIYGYKQLPASVSNHISRILSDYLSDKKIASYNIPDIKQILADSKIELSVHTYKWSEDGTNERTSGELASGISMMMMVVIFFLIMTLAAMVQAGVLEEKKNRIMEVMVSSTRPFNLMMGKIIGIGLVGLTQLICWGVLTVLLLTVAQIAFLGNLYSPEALSRMQASDITGMASSMNAEDFAEMKEVMNIIGGINFGELFVMFLIFFIGGYLLYSSIFAVIGSMVSNDEDTSQFMMPVMILLMFGFYAAYGSMNNPEGSLAFWCSLIPFTSPLVMMVRLPYDVPLWQELLSIGLLYGCFVLMTWIGAKIYRVGVLMYGKKPSIKEIIRWINYK","1006524 1005199","May be an ABC element with MSD domain related to PG844. See ABC Transporters Analysis.TIGR ID: PG0945","ABC transporter, permease protein","Inner membrane, Cytoplasm","Four significant hits in gapped BLAST; e.g. residues 1-437 are 28% similar to gbAAC62424.1 NatB of Bacillus firmus, residues 1-435 are 28% similar to dbjBAB04886.1 BH1167~unknown conserved protein of Bacillus halodurans, residues 1-435 are 27% similar to embCAA74423.1 Hypothetical protein of Bacillus subtilis.","
InterPro
IPR006741
Family
Accessory gene regulator B
SM00793\"[269-420]Tno description
noIPR
unintegrated
unintegrated
signalp\"[1-43]?signal-peptide
tmhmm\"[21-41]?\"[186-206]?\"[227-261]?\"[296-316]?\"[318-336]?\"[342-360]?\"[370-390]?\"[404-424]?transmembrane_regions


","BeTs to 3 clades of COG1668COG name: ATP-dependent Na+ efflux pump membrane component NatBFunctional Class: CThe phylogenetic pattern of COG1668 is amTk--v--B-----------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 149-437 are 33% similar to a (PROTEIN TRANSMEMBRANE NATB SSPB-PRSA INTERGENIC REGION) protein domain (PD018075) which is seen in O87565_BACFI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Mon Jun 14 15:06:34 2004","Mon Jun 14 15:06:34 2004","Mon Jun 14 15:06:34 2004","Fri Jan 3 15:10:25 2003","","Wed Mar 14 14:48:57 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 14 14:48:57 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Mar 14 14:48:57 MST 2001","34540697","","","","","","1","","","PG0945" "PG0844","1007488","1006532","957","ATGCCATTTTTAGAAGCCAATCATATTCGCAAGCGCTATGCTACCCATACTGCGCTGGACGATGTGAGCATAAGCGTCCGGAAAGGACGCGTCTTCGGTCTGCTCGGCCCTAACGGAGCCGGCAAAACCAGTCTGATACGTATCATCAACCGCATTACTGCTCCCGACGAGGGAGAAGTGATCTTCGACGGCCATCCCATGCAGGCGGAAGACATTCGCCGCATCGGCTACCTGCCCGAAGAGCGGGGGCTGTACCCCAAGATGAAAGTGGGCGAGCAGGCCATCTATCTAGCGCAACTTAAGGGAGTGAACAAGCACGAAGCGCGCAAGCGGCTCACCGACTGGTTCGAGAAGTTCGACATCATGCCTTGGTGGAACAAAAAAGTGGAAGAGCTGTCCAAAGGGATGCAGCAGAAGGTGCAGTTCGTGTGCACCGTCATTCACGAACCGGAATTGCTCATATTCGACGAACCCTTCAGCGGATTCGATCCGGTCAATGCCGACCTGCTGAAGCGTGAAATACTGGAGCTGGCCGGCAAGGAGCGTACCGTCATCTTCTCGACGCACAACATGCAGTCGGTGGAAGAAGTATGCGACGACTTCGCACTGATCAACAAATCGCGCGTAGTGCTCCACGGAGCCGTGCGCGAAGTGCGTAGGGAGAACAGCCTCGGCATTATCCGCATGGTAGTCGAAGGCGAGCTGCCGGCAGACTACCTCGGCCGGATCCGGATACTGGAGAAGACGGAGCTACCGGGTTCCATGACGAAGCTGAGAGTGCGCAAAGAAACCACGGCGCACAACCGCGATCTCGTGCGCGACCTGCCCGAGTCGGTACGGCTCGTGTCCTTCTACGAAGAGATCCCGAGCATGCACGACATATTCATCAAGACCGTAGGCCACGGCGTAGAGGAAGAGAATCCGATCCAAGCACAACAAGAAACCACCGATACACAC","6.60","-2.41","36577","MPFLEANHIRKRYATHTALDDVSISVRKGRVFGLLGPNGAGKTSLIRIINRITAPDEGEVIFDGHPMQAEDIRRIGYLPEERGLYPKMKVGEQAIYLAQLKGVNKHEARKRLTDWFEKFDIMPWWNKKVEELSKGMQQKVQFVCTVIHEPELLIFDEPFSGFDPVNADLLKREILELAGKERTVIFSTHNMQSVEEVCDDFALINKSRVVLHGAVREVRRENSLGIIRMVVEGELPADYLGRIRILEKTELPGSMTKLRVRKETTAHNRDLVRDLPESVRLVSFYEEIPSMHDIFIKTVGHGVEEENPIQAQQETTDTH","1007488 1006532","MD BCRA. Function: part of the binding-protein-dependent transport system for bacitracin that confer resistance to this antibiotic; probably responsible for energy coupling to the transport system (by similarity). Similarity: belongs to the ATP-binding transport protein family (ABC transporters).See ABC Transporters Analysis.TIGR ID: PG0946","ABC transporter, ATP-binding protein","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 4-300 are 41% similar to gbAAC62423.1 NatA ofBacillus firmus, residues 4-300 are 40% similar to (gi:7445662) ABC transporter (APT-binding protein) homolog yhaQ of Bacillus subtilis, residues 4-300 are 38% similar to dbjBAB04885.1 ABC transporter (ATP-binding protein) of Bacillus halodurans.","
InterPro
IPR003006
Family
Immunoglobulin/major histocompatibility complex
PS00290\"[142-148]?IG_MHC
InterPro
IPR003439
Domain
ABC transporter related
PD000006\"[131-174]TABC_transporter
PF00005\"[29-207]TABC_tran
PS00211\"[132-146]?ABC_TRANSPORTER_1
PS50893\"[4-231]TABC_TRANSPORTER_2
InterPro
IPR003593
Domain
AAA+ ATPase, core
SM00382\"[28-216]TAAA
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[2-222]TG3DSA:3.40.50.300
PTHR19222\"[4-296]TPTHR19222
SSF52540\"[2-232]TSSF52540


","BeTs to 11 clades of COG1131COG name: ABC-type multidrug transport system, ATPase componentFunctional Class: RThe phylogenetic pattern of COG1131 is AmTKy-VCEBR-uJ-pol--xNumber of proteins in this genome belonging to this COG is 3","***** IPB001617 (ABC transporters family) with a combined E-value of 6.5e-08. IPB001617A 34-49 IPB001617B 133-144","Residues 1-229 are 22% similar to a (C24F3.5 PROTEIN) protein domain (PD218211) which is seen in Q21213_CAEEL.Residues 74-210 are 26% similar to a (PROTEIN BACE PLASMID AS-48D) protein domain (PD034066) which is seen in O52967_ENTFA.Residues 75-130 are 66% similar to a (PROTEIN ATP-BINDING ABC TRANSPORTER) protein domain (PD014865) which is seen in O07524_BACSU.Residues 19-65 are 57% similar to a (ATP-BINDING TRANSPORT PROTEIN TRANSPORTER ABC) protein domain (PD000005) which is seen in P96205_MYCTU.Residues 131-171 are 78% similar to a (ATP-BINDING TRANSPORT PROTEIN TRANSPORTER ABC) protein domain (PD000006) which is seen in YATR_BACFI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Wed Jun 16 10:38:21 2004","Wed Jun 16 09:51:06 2004","Wed Jun 16 09:51:06 2004","Thu Jan 11 16:30:28 2001","Wed Mar 14 14:23:14 MST 2001","Wed Mar 14 14:23:14 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG0844 is 22-29% similar to:PG0566 ABC transporter protein,PG0921 ABC transporter (ATP-binding protein ABC),PG0618 ABC transport component, ATPase component,PG1477 ABC transporter ATPase,PG1497 ABC transporter protein, MSD-NBD fusion protein,PG1211 ABC transporter, ATP-binding protein,PG1451 ABC transporter protein, ATP-binding protein,PG1048 ABC transporter, ATP-binding protein,PG0903 ABC transporter ATP binding protein,PG0233 ABC transporter ATPase,PG0584 ferric enterobactin transport protein/iron(III) dic...,PG1917 cell-division ATP-binding protein,PG1533 ABC transporter,PG0605 ABC transport system component; ATP-binding protein...,PG0254 ABC transporter/ATP-binding protein,PG1084 ABC transporter ATP-binding protein,PG1049 ABC transporter protein,PG1923 ABC transporter (ATP-binding protein).","Tue Apr 3 18:02:12 MDT 2001","Wed Jun 16 09:51:06 2004","-52% similar to PDB:1VPL Crystal structure of ABC transporter ATP-binding protein (TM0544) from Thermotoga maritima at 2.10 A resolution (E_value = 1.1E_27);-49% similar to PDB:1OXS Crystal structure of GlcV, the ABC-ATPase of the glucose ABC transporter from Sulfolobus solfataricus (E_value = 4.8E_23);-49% similar to PDB:1OXT Crystal structure of GlcV, the ABC-ATPase of the glucose ABC transporter from Sulfolobus solfataricus (E_value = 4.8E_23);-49% similar to PDB:1OXU Crystal structure of GlcV, the ABC-ATPase of the glucose ABC transporter from Sulfolobus solfataricus (E_value = 4.8E_23);-49% similar to PDB:1OXV Crystal structure of GlcV, the ABC-ATPase of the glucose ABC transporter from Sulfolobus solfataricus (E_value = 4.8E_23);","","","Residues 29 to 207 (E-value = 4.1e-50) place PG0844 in the ABC_tran family which is described as ABC transporter (PF00005)","Wed Mar 14 14:23:14 MST 2001","34540698","","","","","","1","","","PG0946" "PG0845","1007964","1007494","471","ATGATTCAACTAAACCTTCCCCCTTACGAACATCGTATTCACCAAGAAGATGAGTCCATGTTCATTTTCGACAGCATTCGGCGTCGCTATGTGGCTCTGACGCCGGAGGAGTGGGTGCGCCAGCACTTTGTCCATTATCTGACCGATGTACTGGGCTACCCGGCCGATCTGATCCGCAACGAAGCACAGCTACGAATAGACCGGCGGAGAAAACGCTGCGATACGGTCGTCTACGACACGAACCTGCGGCCGATCGTTCTCTGCGAATACAAGGCTCCGACGGTGTCGCTGACTCAGAAGACGATGGATCAAATCCTCTGCTACAACTTCATCTTCCGAGTACCGCTGTTGTTACTGAGCAATGGATTGCAGCATGCAGCCTGTCTGGTAGATTACGAACAGAGCGGCTATGTATTCCTGCCTGAAATCCCTTCTTACGAAGAACTGACAACTATCATTCAATCAAATCAA","6.00","-2.99","18621","MIQLNLPPYEHRIHQEDESMFIFDSIRRRYVALTPEEWVRQHFVHYLTDVLGYPADLIRNEAQLRIDRRRKRCDTVVYDTNLRPIVLCEYKAPTVSLTQKTMDQILCYNFIFRVPLLLLSNGLQHAACLVDYEQSGYVFLPEIPSYEELTTIIQSNQ","1007964 1007494","TIGR ID: PG0947","conserved hypothetical protein","Cytoplasm","Few weak hits in gapped BLAST; e.g. residues 1-149 are 28% similar to dbj|BAA98795.1| CT469 hypothetical protein of Chlamydophila pneumoniae J138, residues 18-149 are 25% similar to gb|AAF39558.1| conserved hypothetical protein of Chlamydia muridarum, residues 22-149 are 26% similar to gb|AAC68069.1| hypothetical protein of Chlamydia trachomatis.","
InterPro
IPR007409
Domain
Type I restriction enzyme R protein N terminus
PF04313\"[58-136]THSDR_N


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 22-149 are 28% similar to a (PROTEIN CT469) protein domain (PD190466) which is seen in Q9Z7W6_BBBBB.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Jan 11 16:36:50 2001","Thu Jan 11 16:36:50 2001","Thu Jan 11 16:36:50 2001","","Tue Apr 3 18:03:45 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 26-122 are 32% similar to PG0495.","Thu Jan 11 16:36:50 2001","Tue Apr 3 18:03:45 MDT 2001","-56% similar to PDB:1B55 PH DOMAIN FROM BRUTON'S TYROSINE KINASE IN COMPLEX WITH INOSITOL 1,3,4,5-TETRAKISPHOSPHATE (E_value = );-56% similar to PDB:1BTK PH DOMAIN AND BTK MOTIF FROM BRUTON'S TYROSINE KINASE MUTANT R28C (E_value = );-56% similar to PDB:1BWN PH DOMAIN AND BTK MOTIF FROM BRUTON'S TYROSINE KINASE MUTANT E41K IN COMPLEX WITH INS(1,3,4,5)P4 (E_value = );","","","No significant hits to the Pfam 11.0 database","Tue Apr 3 18:03:45 MDT 2001","34540699","","","","","","1","","","PG0947" "PG0846","1008033","1008806","774","ATGAAAACGAAGCAAGAGATAGTTGAGAACTGGTTACCGCGATATACGCAGAGGCAGCTGATCGATTTCGAACCGTACATCCTGCTGACGAACTTTTCGCACTATCTGCATGTCTTCGCCGAGCACTACGGGGTACCTATCGTCGGAGAACATACCTCCATGCCGAATGCTTCGGCCGAAGGCGTCACCCTCATCAACTTCGGCATGGGTAGTGCCAATGCGGCTACCATCATGGACTTGCTCTGGGCTATACACCCCAAGGCTGTGATCTTTCTCGGCAAATGCGGAGGCCTGAAACTGGAAAATGCTTTGGGCGATTACCTCCTGCCCATAGCTGCCATACGCGGCGAGGGTACGTCCAACGACTATCTGCCCGAGGAGGTGCCCTCTCTGCCCTCATTTTCCGTACTGCGAGCCATTTCGTCAGCCATTCAGAACAAAGGCAAGGACTACTGGACAGGTACGGTCTATACTACGAACCGGCGGGTCTGGGAGTACGATGAGAAGTTCAAGGACTATCTGCGCAGTACGCATGCAAGCGGCGTGGATATGGAGACGGCTACGCTCATGACGGTAGGATTTGCCAATAAGATTCCCATGGGAGCGTTGCTTCTGATTTCCGACAGACCTATGTTCCCAGAAGGTGTCAAGACGGAAGAGAGCGATCAGCTCGTAACGGACAACTTTGCCGAAGAGCATCTGATGCTTGGTATCGATGCTCTCGAAATCATTCGGGAGAACAAATCTTCCATCAAGCATATTCGCTTCAACTGG","5.40","-7.11","29017","MKTKQEIVENWLPRYTQRQLIDFEPYILLTNFSHYLHVFAEHYGVPIVGEHTSMPNASAEGVTLINFGMGSANAATIMDLLWAIHPKAVIFLGKCGGLKLENALGDYLLPIAAIRGEGTSNDYLPEEVPSLPSFSVLRAISSAIQNKGKDYWTGTVYTTNRRVWEYDEKFKDYLRSTHASGVDMETATLMTVGFANKIPMGALLLISDRPMFPEGVKTEESDQLVTDNFAEEHLMLGIDALEIIRENKSSIKHIRFNW","1008033 1008806","TIGR ID: PG0948","AMP nucleosidase","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 3-242 are 40% similar to dbj|BAA99102.1| AMP nucleosidase of Chlamydophila pneumoniae J138, residues 7-246 are 40% similar to gb|AAF39010.1| AMP nucleosidase-related protein of Chlamydia muridarum, residues 3-246 are 39% similar to gb|AAC68346.1| AMP Nucleosidase of Chlamydia trachomatis.This sequence is similar to BT0888.","
InterPro
IPR000845
Family
Nucleoside phosphorylase
PF01048\"[25-241]TPNP_UDP_1
InterPro
IPR010944
Family
AMP nucleosidase, putative
TIGR01721\"[2-258]TAMN-like
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.1580\"[4-256]TG3DSA:3.40.50.1580
SSF53167\"[4-256]TSSF53167


","BeTs to 3 clades of COG0775COG name: Nucleoside phosphorylaseFunctional Class: FThe phylogenetic pattern of COG0775 is ------vcEbRhuj--OliN-Number of proteins in this genome belonging to this COG is 2","***** IPB000845 (Purine and other phosphorylases, family 1) with a combined E-value of 5.4e-12. IPB000845B 53-81 IPB000845C 85-109 IPB000845E 178-209","Residues 3-242 are 40% similar to a (AMP NUCLEOSIDASE HYDROLASE ALLOSTERIC) protein domain (PD167674) which is seen in Q9Z712_BBBBB.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Mar 22 12:54:04 MST 2000","Wed Dec 3 09:51:09 2003","Thu Jan 11 16:40:20 2001","Wed May 23 12:17:49 MDT 2001","Wed May 23 12:17:49 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed May 23 12:17:49 MDT 2001","-100% similar to PDB:1YBF Crystal structure of AMP nucleosidase from Bacteroides thetaiotaomicron VPI-5482 (E_value = 1.9E_149);-45% similar to PDB:2GUW Crystal structure of AMP Nucleosidase from Salmonella typhimurium LT2 (E_value = 2.9E_25);-45% similar to PDB:1T8R Crystal Structure of E. coli AMP Nucleosidase (E_value = 3.8E_25);-45% similar to PDB:1T8S Crystal Structure of E.coli AMP Nucleosidase complexed with formicin 5'-monophosphate (E_value = 3.8E_25);-45% similar to PDB:1T8W Crystal Structure of E. coli AMP Nucleosidase (E_value = 3.8E_25);","","","Residues 25 to 241 (E-value = 7.4e-10) place PG0846 in the PNP_UDP_1 family which is described as Phosphorylase family (PF01048)","Wed May 23 12:17:49 MDT 2001","34540700","","","","","","1","","","PG0948" "PG0847","1008828","1009832","1005","ATGGCCTCCTATTCCGATATTGTCGATTCTGTACGTAAGTGCCAATTCTCGCCACTCTATCTGCTGGCCGGCGAAGAACCCTTCTATATAGACGAGTTGGCCACTCTGCTGGAGACGCACGTGGTGCCGGTAGATGAATGGGACTTCAACAGGGTTATCCTCTACGGCGACAAAACCTCCGTAGCCGATATAGCGAACGAAGCGCGCCGTTTCCCGATGATGGGCCGGAGGCAGTTGATCGTCGTTCGGGAGGCGCAGTTAGTGGACAATATCGACTTGCTCGAAGCACATTATGGCACTTTCCCCGATACTACGATTCTGGTCATTGCCTATAAGAAGAAACCCGATAAGCGAAAGGCTTTCTATACGAAGGCTGAAAAGTTCGGGAAAGTATTCGTGTCCGAGACCATACCCGACTATAAGATGCCGGACTTCATCCTGTCGGCTGCTGCCGGCAAGAAACTGAGCGTATCGCCCGAAGTGGCATATATGCTGGCCGATTACCTCGGCAATGATCTGGAGAAGTTGATGAATGAGCTGGACAAGCTCATTCTCATAACACAAGATAGTAGGGGAGTGGTCACGTCCGAGATCGTGGAGCAGCATATCGGAGTAAGCAAATCCTTCAATAATTTCGAACTCCTTCGTGCCATAGTCAATCGCGAAACGGGCAAAACCTTTCGCATCGCTCACTACTTTGCCAGAAATGAGAAGGAGCACCCCATACAGGCCACTCTACCCGTACTCTTCAACTATTTCAGCAACCTGATGATCGTTTGCTACTTGCCACAGAAAAAACCCGATGCTATCATGAAAGCATTGTCGATACGCAATTTCCAAGTGCGCGACTATATGACAGGGCTGAAGATGTATTCGACGAGGAAGGTTTTCGACATTATACACGAGATCCGGATGACGGATGCCCGCAGTAAGGGGGTGGATACGACCGGCACATTTGCCGGCAGTGGGGATTTGCTTCGGGAGCTACTCCATTTTATATTCCAT","7.30","0.85","38367","MASYSDIVDSVRKCQFSPLYLLAGEEPFYIDELATLLETHVVPVDEWDFNRVILYGDKTSVADIANEARRFPMMGRRQLIVVREAQLVDNIDLLEAHYGTFPDTTILVIAYKKKPDKRKAFYTKAEKFGKVFVSETIPDYKMPDFILSAAAGKKLSVSPEVAYMLADYLGNDLEKLMNELDKLILITQDSRGVVTSEIVEQHIGVSKSFNNFELLRAIVNRETGKTFRIAHYFARNEKEHPIQATLPVLFNYFSNLMIVCYLPQKKPDAIMKALSIRNFQVRDYMTGLKMYSTRKVFDIIHEIRMTDARSKGVDTTGTFAGSGDLLRELLHFIFH","1008828 1009832","TIGR ID: PG0949","conserved hypothetical protein","Cytoplasm","Few significant hits in gapped BLAST; e.g. residues 6-311 are 23% similar to emb|CAB14498.1| similar to hypothetical proteins of Bacillus subtilis, residues 3-279 are 21% similar to dbj|BAB05056.1| unknown conserved protein of Bacillus halodurans, residues 18-278 are 23% similar to dbj|BAA10489.1| hypothetical protein of Synechocystis sp..","
InterPro
IPR005790
Family
DNA polymerase III, delta subunit
TIGR01128\"[16-335]TholA
InterPro
IPR008921
Domain
DNA polymerase III clamp loader subunit, C-terminal
SSF48019\"[209-329]TPol_clamp_load_C
InterPro
IPR010372
Family
DNA polymerase III, delta
PF06144\"[20-334]TDNA_pol3_delta
noIPR
unintegrated
unintegrated
G3DSA:1.10.8.60\"[138-228]TG3DSA:1.10.8.60
SSF52540\"[17-204]TSSF52540


","BeTs to 3 clades of COG1466COG name: Uncharacterized BCRFunctional Class: SThe phylogenetic pattern of COG1466 is -----q-c-b----gp-----Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 18-311 are 23% similar to a (PROTEIN COMEC-RPST INTERGENIC REGION) protein domain (PD024574) which is seen in YQEN_BACSU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Jan 11 16:44:08 2001","Thu Jan 11 16:44:08 2001","Thu Jan 11 16:44:08 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540701","","","","","","1","","","PG0949" "PG0848","1010003","1010380","378","ATGAAAACTCCTGCAGAACTGAAGTATTCTAAGGATCATGAGTGGGCTCGCCAAGAAGGCGACGTTGTCTTCATCGGTATCACGGACTATGCTCAAGGCGAATTGGGCGAAATTGTCTATGTGGACGTTACTACCGAAGGCGAAACGCTCGAGGCTGATGAGGTTTTCGGATCGATCGAAGCTGTGAAGACTGTTTCCGACCTGATGATGCCTATCGCCGGCGAGGTATTGGAAGTGAACCCTGATCTGGAAGAGCAACCCGAACTCGTAAACAGCGATCCCTACGGTGCCGGTTGGATTATCAAGGTTAAGGCTGCAAATGCTGCCGACTTCGACAACCTCCTGAGTGCTGCCGAATACGAAAAACTGATAGCTCAA","3.80","-18.75","13793","MKTPAELKYSKDHEWARQEGDVVFIGITDYAQGELGEIVYVDVTTEGETLEADEVFGSIEAVKTVSDLMMPIAGEVLEVNPDLEEQPELVNSDPYGAGWIIKVKAANAADFDNLLSAAEYEKLIAQ","1010003 1010380 [Shadowed by 1098]","TIGR ID: PG0950","glycine cleavage H protein (glycine decarboxylase component)","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 4-126 are 52% similar to dbj|BAB07203.1| glycine cleavage system protein H of Bacillus halodurans, residues 1-123 are 47% similar to emb|CAB15269.1| similar to glycine cleavage system protein H of Bacillus subtilis, residues 4-120 are 54% similar to gb|AAF41003.1| glycine cleavage system H protein of Neisseria meningitidis MC58.This sequence is orthologous to CT282.","
InterPro
IPR002930
Family
Glycine cleavage H-protein
PTHR11715\"[4-126]TGCV_H
PF01597\"[7-124]TGCV_H
TIGR00527\"[2-126]TgcvH
InterPro
IPR003016
Binding_site
2-oxo acid dehydrogenase, lipoyl-binding site
PS00189\"[47-76]TLIPOYL
InterPro
IPR011053
Domain
Single hybrid motif
SSF51230\"[2-126]THybrid_motif
noIPR
unintegrated
unintegrated
G3DSA:2.40.50.100\"[1-124]TG3DSA:2.40.50.100


","BeTs to 9 clades of COG0509COG name: Glycine cleavage system H protein (lipoate-binding)Functional Class: EThe phylogenetic pattern of COG0509 is ---kyQvcebr-------in-Number of proteins in this genome belonging to this COG is 1","***** BP03260 (GLYCINE PROTEIN H CLEAVAGE SYSTEM LIPOYL PREC) with a combined E-value of 1.1e-41. BP03260A 7-17 BP03260B 24-64 BP03260C 66-100 BP03260D 110-122***** PF01597 (Glycine cleavage H-protein) with a combined E-value of 1.2e-20. PF01597 66-101","Residues 9-114 are 33% similar to a (GLYCINE CLEAVAGE SYSTEM H) protein domain (PD174058) which is seen in Q9Z8B0_BBBBB.Residues 80-124 are 48% similar to a (PROTEIN GLYCINE H CLEAVAGE) protein domain (PD003110) which is seen in GCSH_ECOLI.Residues 4-43 are 58% similar to a (PROTEIN GLYCINE H CLEAVAGE) protein domain (PD003260) which is seen in GCSH_ECOLI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Mar 14 14:57:03 MST 2001","Thu Jan 11 16:49:18 2001","Thu Jan 11 16:49:18 2001","Wed Mar 14 14:57:03 MST 2001","Wed Mar 14 14:57:03 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 14 14:57:03 MST 2001","-67% similar to PDB:1ONL Crystal structure of Thermus thermophilus HB8 H-protein of the glycine cleavage system (E_value = 1.1E_32);-68% similar to PDB:1DXM REDUCED FORM OF THE H PROTEIN FROM GLYCINE DECARBOXYLASE COMPLEX (E_value = 2.9E_28);-68% similar to PDB:1HPC REFINED STRUCTURES AT 2 ANGSTROMS AND 2.2 ANGSTROMS OF THE TWO FORMS OF THE H-PROTEIN, A LIPOAMIDE-CONTAINING PROTEIN OF THE GLYCINE DECARBOXYLASE (E_value = 2.9E_28);-68% similar to PDB:1HTP REFINED STRUCTURES AT 2 ANGSTROMS AND 2.2 ANGSTROMS OF THE TWO FORMS OF THE H-PROTEIN, A LIPOAMIDE-CONTAINING PROTEIN OF THE GLYCINE DECARBOXYLASE COMPLEX (E_value = 2.9E_28);-67% similar to PDB:1ZKO Crystal structure of Glycine cleavage system H protein (tm0212) from Thermotoga maritima at 1.65 A resolution (E_value = 2.0E_26);","","","Residues 7 to 126 (E-value = 2.2e-54) place PG0848 in the GCV_H family which is described as Glycine cleavage H-protein (PF01597)","Wed Mar 14 14:57:03 MST 2001","34540702","","","","","","1","","","PG0950" "PG0850","1010384","1010887","504","ATGCAGCCTTTGGTAAGCATCATCATGGGTAGTACTTCCGATCTGCCCATTATGGAGAAAGCCGCCAAAATGCTCGATGAAATGCAGATTCCATTCGAGATGTTGGCGCTTTCGGCTCATCGTACTCCGGCTGAAGTAGAGACTTTTGCACACGAGGCCAGAGCTCGCGGTATCAAGGTAATTATCGCTGCTGCCGGTATGGCAGCTCATTTGTGTGGCGTAATTGCTTCCATGACGTCTATTCCGGTAATAGGTGTACCCATCAATGCCACTCTTGACGGAATGGATGCTCTGTTAGCCATCGTTCAAATGCCTCCGGGGATCCCCGTTGCTACTGTGGGGATCAATGCTGCCCAGAATGCAGCACTTTTGGCCGTCCAGATGATGGCTACCGGCGACGAAGCTCTCTATGCTCGACTGGAGGCCTATAAGGAGTCGCTCAAAGAAAAAGTCGTTAAGGCCAATCGCGAGCTGGCAGAGGTGAAGTACAACTTCAAAACGAAT","5.70","-2.33","17845","MQPLVSIIMGSTSDLPIMEKAAKMLDEMQIPFEMLALSAHRTPAEVETFAHEARARGIKVIIAAAGMAAHLCGVIASMTSIPVIGVPINATLDGMDALLAIVQMPPGIPVATVGINAAQNAALLAVQMMATGDEALYARLEAYKESLKEKVVKANRELAEVKYNFKTN","1010384 1010887 [Shorter 1098 210 99]","TIGR ID: PG0951","phosphoribosylaminoimidazole carboxylase","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 3-161 are 49% similar to emb|CAB50544.1| phosphoribosylaminoimidazole carboxylase of Pyrococcus abyssi, residues 2-161 are 47% similar to dbj|BAA29394.1| hypothetical phosphoribosylaminoimidazole carboxylase catalytic subunit of Pyrococcus horikoshii, residues 3-161 are 47% similar to gb|AAA35285.1| phosphoribosylaminoimidazole carboxylase of Schizosaccharomyces pombe.","
InterPro
IPR000031
Domain
1-(5-Phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase
PD002193\"[10-148]TAIR_carboxyl
G3DSA:3.40.50.7700\"[2-161]TAIR_carboxyl
PF00731\"[3-158]TAIRC
TIGR01162\"[5-159]TpurE
SSF52255\"[3-164]TAIR_carboxyl
noIPR
unintegrated
unintegrated
PTHR23046\"[1-168]TPTHR23046


","BeTs to 11 clades of COG0041COG name: Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase PurEFunctional Class: FThe phylogenetic pattern of COG0041 is amtkyqvcebrh---------Number of proteins in this genome belonging to this COG is 1","***** PF00731 (AIR carboxylase) with a combined E-value of 1.1e-49. PF00731A 5-35 PF00731B 36-76 PF00731C 78-118","Residues 3-153 are 48% similar to a (CARBOXYLASE PHOSPHORIBOSYLAMINOIMIDAZOLE) protein domain (PD002193) which is seen in PUR6_SCHPO.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Jan 12 11:44:05 2001","Fri Jan 12 11:44:05 2001","Fri Jan 12 11:44:05 2001","Fri Apr 20 10:09:13 MDT 2001","Fri Apr 20 10:09:13 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Apr 20 10:09:13 MDT 2001","-66% similar to PDB:1O4V Crystal structure of phosphoribosylaminoimidazole mutase PurE (TM0446) from Thermotoga maritima at 1.77 A resolution (E_value = 3.2E_33);-65% similar to PDB:1XMP Crystal Structure of PurE (BA0288) from Bacillus anthracis at 1.8 Resolution (E_value = 8.8E_31);-69% similar to PDB:1U11 PurE (N5-carboxyaminoimidazole Ribonucleotide Mutase) from the acidophile Acetobacter aceti (E_value = 7.7E_27);-69% similar to PDB:2FW1 Structure of PurE (N5-carboxyaminoimidazole ribonucleotide mutase) from the acidophilic bacterium Acetobacter aceti, at pH 8.5 (E_value = 7.7E_27);-69% similar to PDB:2FWJ Structure of PurE (N5-carboxyaminoimidazole ribonucleotide mutase) from the acidophilic bacterium Acetobacter aceti, complexed with AIR (5-aminoimidazole ribonucleotide) (E_value = 7.7E_27);","","","Residues 3 to 158 (E-value = 3.4e-80) place PG0850 in the AIRC family which is described as AIR carboxylase (PF00731)","Fri Apr 20 10:09:13 MDT 2001","34540703","","","","","","1","","","PG0951" "PG0851","1011064","1012806","1743","ATGCTCGATCTGTTCGGATATAAAAGACGCAAGACATCCGTAGCTCAAATAGGTGATACACCTCTCGGCGGAGATTTTCCCATTCGCATACAATCTATGGCCAATGTGTCCACCATGGACACACAGGCATCTGTCGATCAGGCAGCTCGAATTATAGATGCAGGGGCTGATTATGTCCGTTTTACGGCTCAGGGTGTACGTGAAGCCGTCAATCTTCAGCATATCCATGCCGGGCTATGCCGTTTGGGCTATCACATACCATTGGTAGCGGATATTCACTTTAGTCCCAAAGCTGCAGAAGAAGCTCTGTTGCATGTGGAGAAGGTGCGCATCAATCCGGGCAATTTCGTCGAGATGAAGTCCGGGGGCAATCTGACTGAAGAGGAAGCTTTCGATCTGGGACATAAAGCTGTGAGAGAACGTTTCGGCTCTTTCGTGGAAGATGCCAAACGATTAGGGCGAGCCATCCGCATCGGAGTCAATCATGGCTCTCTGTCCGAACGTATGCTTACGCGCTATGGCGATACGGCTGAAGGCATGGTACAAAGCTGCATGGAATACCTCGATGTATGCCACGAACATGAGTTCGACGATGTGGTGATCTCGATGAAAGCATCGAATACTTTGGTCATGACAGCAGCTGTACGCCTTCTTGTGGAACGAATGGATGCTGCAGACATGCACTATCCGCTTCACATCGGTGTCACCGAGGCTGGCGATGGTGAGGACGGGCGGATCAAGAGTGCTGTCGGCATAGGTTCGCTTTTGGCTGATGGCATTGGCGATACCATTCGTGTTTCACTGAGTGAGGATCCGGAGCATGAGATTCCGGTAGCCCGCAAATTGCTTGCCTATATAGAGAAACGTAACGGCCACCCGTCGGTAGCTGTTCCTCAACCAGATCGTTACGATCGGGATAAACTCCGGCGCCAAGAAACATATGCTGTCGGAGACTTTATCGGAAGTAAGCACATTCCGATTGTCATATCGGACCGCAGACAGGGAGATGATCATTTCGATACCGAACTCTTGCCTGACATCGTACTCGGGGCCGATGGTCGGTATTATCGTGAGGATATGCTGCTGGAAAATATCGTTTTTCGTTCCATCCGACAGGATGATCTGACTGACGATTGTCTACAGACTATTGAAGCAATCTCTGACACAGTTATTATCCTTGAATCCGTGGGTATCAATCCCGTAGCTGAATGGCGTGCAATGCTTCATCGTTTGGAGCTGGCAGGATGTCGATGTCCTGTCATCCTGCACCGCAGGTATGACTGCACCGATTTGGAAGATCTTCAGCTACAAGCGTCGGCTGACATGGGGGCTATACTTCTTGAAGGGCGAGGCAATGGGCTTATGATTACTGCAGACAAACTGCCCTCGGTCGCTGTGAATCACTTGGCTTTCGGTATTTTACAAGCTACAAGGTTACGTATGAGTCGGACGGAATATATCAGCTGCCCGAGCTGTGGCCGTACATTGTACAATTTGCAAGAAACCGTAGCTCGAATCAAAGCTGCAACTGCACATCTAAAAGAATTGAAGATCGGCATTATGGGCTGTATCGTCAATGGGCCGGGTGAAATGGCCGATGCCGACTATGGCTACGTAGGGGCGGGTCCGGGACGAATCGATCTGTATAAACAGAAGATATGTGTTCGTCGTGGTATTCCTCAGGAGCAGGCCGTACAACAGCTTATCGAACTCATCAAAGAAAACGGAGACTGGAAAGAGCGT","5.60","-14.88","64373","MLDLFGYKRRKTSVAQIGDTPLGGDFPIRIQSMANVSTMDTQASVDQAARIIDAGADYVRFTAQGVREAVNLQHIHAGLCRLGYHIPLVADIHFSPKAAEEALLHVEKVRINPGNFVEMKSGGNLTEEEAFDLGHKAVRERFGSFVEDAKRLGRAIRIGVNHGSLSERMLTRYGDTAEGMVQSCMEYLDVCHEHEFDDVVISMKASNTLVMTAAVRLLVERMDAADMHYPLHIGVTEAGDGEDGRIKSAVGIGSLLADGIGDTIRVSLSEDPEHEIPVARKLLAYIEKRNGHPSVAVPQPDRYDRDKLRRQETYAVGDFIGSKHIPIVISDRRQGDDHFDTELLPDIVLGADGRYYREDMLLENIVFRSIRQDDLTDDCLQTIEAISDTVIILESVGINPVAEWRAMLHRLELAGCRCPVILHRRYDCTDLEDLQLQASADMGAILLEGRGNGLMITADKLPSVAVNHLAFGILQATRLRMSRTEYISCPSCGRTLYNLQETVARIKAATAHLKELKIGIMGCIVNGPGEMADADYGYVGAGPGRIDLYKQKICVRRGIPQEQAVQQLIELIKENGDWKER","1011016 1012806","Involved in density-dependent regulation of peptidoglycan biosynthesis.TIGR ID: PG0952","1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, GcpE","Cytoplasm","Numerous significant hits in gapped BLAST but most significant hits have a gap; e.g. residues 2-575 are 49% similar to (gi29347927refNP_811430.1) 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase of Bacteroides thetaiotaomicron VPI-5482, residues 9-282 are 48% and residues 356-578 are 41% similar to dbjBAB09833.1 GcpE protein of Arabidopsis thaliana, residues 9-314 are 45% and residues 427-580 are 49% similar to dbjBAA98581.1 GcpE protein of Chlamydophila pneumoniae J138, residues 9-283 are 48% and residues 436-580 are 50% similar to gbAAC67648.1 hypothetical protein of Chlamydia trachomatis.This sequence is similar to CT057, an uncharacterized but conserved protein, and to BT2517.","
InterPro
IPR004588
Family
IspG protein
PF04551\"[9-355]T\"[470-542]TGcpE
TIGR00612\"[9-573]TispG_gcpE
InterPro
IPR011005
Domain
Dihydropteroate synthase-like
SSF51717\"[10-289]TDHP_synth_like
noIPR
unintegrated
unintegrated
SSF56014\"[481-581]TSSF56014


","BeTs to 9 clades of COG0821COG name: Essential bacterial protein GcpE, involved in density-dependent regulation of peptidoglycan biosynthesisFunctional Class: MThe phylogenetic pattern of COG0821 is -----qvcebrhuj---lin-Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 443-573 are 53% similar to a (PROTEIN GCPE HOMOLOG E AARC PUTATIVE) protein domain (PD008743) which is seen in Q9Z8H0_BBBBB.","","Thu Jun 14 14:07:49 MDT 2001","","Thu Jun 14 14:07:49 MDT 2001","Thu Jun 14 14:07:49 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 14:07:49 MDT 2001","Thu Jun 14 14:07:49 MDT 2001","","Tue Nov 18 15:57:24 2003","Tue Apr 22 14:59:53 2003","Mon Mar 29 10:10:49 2004","Tue Apr 22 14:59:32 2003","","Mon Jun 18 11:00:44 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Jul 22 16:42:14 2008","No significant hits to the PDB database (E-value < E-10).","","","Residues 9 to 355 (E-value = 7.8e-43) place PG0851 in the GcpE family which is described as GcpE protein (PF04551)","Mon Jun 18 11:00:44 MDT 2001","34540704","","","Xu,J., Bjursell,M.K., Himrod,J., Deng,S., Carmichael,L.K.,Chiang,H.C., Hooper,L.V. and Gordon,J.I.A Genomic View of the Human-Bacteroides thetaiotaomicron SymbiosisScience 299 (5615), 2074-2076 (2003)PUBMED 12663928","","Tue Nov 18 15:57:24 2003","1","","","PG0952" "PG0852","1012866","1013297","432","ATGAAAATCAAAATTATCAATCGCTCGCATCATCCCTTGCCGACATATGCGACTTCGGCATCTGCCGGTATGGATCTGCGTGCATCCATCGAAGAGCCTATCACGTTGTTGCCACTCGAACGTCGTCTCATTCCAACAGGCCTCTTCATCGAACTCCCGGTAGGCTATGAAGCACAGATCCGCCCCCGAAGCGGACTGGCTCTCCGACACGGTATTACGCTGGTCAATAGCCCAGGGACTATCGATGCCGATTATCGCGGTGAGATAGGGATTATTATGATCAATCTCTCGAATACTCCTTTTACCATAGCAGATGGCGAACGGATTTGCCAGCTTGTTATCGCCAGACATGAACAGGCCGAATGGGTGCTTACAGACGAATTGGCCGATACGGAACGAGGTGCAGGCGGATTTGGTCATACGGGCAAAGAA","6.00","-2.85","15750","MKIKIINRSHHPLPTYATSASAGMDLRASIEEPITLLPLERRLIPTGLFIELPVGYEAQIRPRSGLALRHGITLVNSPGTIDADYRGEIGIIMINLSNTPFTIADGERICQLVIARHEQAEWVLTDELADTERGAGGFGHTGKE","1012836 1013297 [Delay by 114 1101 85 0]","TIGR ID: PG0953","deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase)","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 1-142 are 55% similar to gb|AAC06559.1| deoxyuridine 5'triphosphate nucleotidohydrolase of Aquifex aeolicus, residues 13-142 are 61% similar to gb|AAF38522.1| deoxyuridine 5`-triphosphate nucleotidohydrolase of Chlamydophila pneumoniae AR39, residues 1-142 are 53% similar to gb|AAC14879.1| dUTP pyrophosphatase of Chlorobium tepidum.","
InterPro
IPR003232
Domain
dCTP Deaminase
PD004900\"[36-116]TdCTP_deaminase
InterPro
IPR008180
Domain
DeoxyUTP pyrophosphatase
PF00692\"[9-142]TdUTPase
InterPro
IPR008181
Domain
DeoxyUTP pyrophosphatase subfamily 1
TIGR00576\"[2-143]Tdut
noIPR
unintegrated
unintegrated
G3DSA:2.70.40.10\"[3-142]TG3DSA:2.70.40.10
PTHR11241\"[4-144]TPTHR11241
SSF51283\"[8-139]TSSF51283


","BeTs to 9 clades of COG0756COG name: dUTPaseFunctional Class: FThe phylogenetic pattern of COG0756 is ----yq--eBrhuj---linxNumber of proteins in this genome belonging to this COG is 1","***** PF00692 (dUTPase) with a combined E-value of 1.5e-23. PF00692A 52-64 PF00692B 79-89 PF00692C 103-114 PF00692D 133-142","Residues 13-101 are 66% similar to a (DUTPASE HYDROLASE NUCLEOTIDOHYDROLASE DEOXYURIDINE) protein domain (PD000946) which is seen in Q9Z9C2_BBBBB.","","Thu Jun 14 14:08:28 MDT 2001","","Thu Jun 14 14:08:28 MDT 2001","Thu Jun 14 14:08:28 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 14:08:28 MDT 2001","Thu Jun 14 14:08:28 MDT 2001","","","Mon Jun 18 13:10:09 MDT 2001","Mon Jun 18 13:10:09 MDT 2001","Fri Jan 12 11:57:59 2001","Mon Jun 18 13:05:48 MDT 2001","Mon Jun 18 13:05:48 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed May 23 11:35:58 MDT 2001","-64% similar to PDB:1DUD DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDE HYDROLASE (D-UTPASE) COMPLEXED WITH THE SUBSTRATE ANALOGUE DEOXYURIDINE 5'-DIPHOSPHATE (D-UDP) (E_value = 1.0E_28);-64% similar to PDB:1DUP DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDO HYDROLASE (D-UTPASE) (E_value = 1.0E_28);-64% similar to PDB:1EU5 STRUCTURE OF E. COLI DUTPASE AT 1.45 A (E_value = 1.0E_28);-64% similar to PDB:1EUW ATOMIC RESOLUTION STRUCTURE OF E. COLI DUTPASE (E_value = 1.0E_28);-64% similar to PDB:1RN8 Crystal structure of dUTPase complexed with substrate analogue imido-dUTP (E_value = 1.0E_28);","","","Residues 9 to 142 (E-value = 9.7e-38) place PG0852 in the dUTPase family which is described as dUTPase (PF00692)","Mon Jun 18 13:05:48 MDT 2001","34540705","","","","","","1","","","PG0953" "PG0853","1013328","1015064","1737","ATGCGGATCCATTCTATCATTCTCCTGCTGTTTCTTTTAGTTATTTCTCCTGTAGCCGGAAGTATATCCATTACAGACAGTACAGCATCTAAGTTCGACCGATATTTCTATGAAGGTGTCCGGCAGCGAGAACAGGAGAATTATGCTGCAGCTTTCGACATCTTTCGCTATTGCCATCGGTTGAATCCCAACGATGCGGCTCTGTTATCGGAGTTGGGAAAACTGTATATTGCCATTGGGCGTCAGGAGGAAGGAACCCGGTATTTGGAACAAGCCTATCGGCTCTATCCCGACAACAAGAACTATGGCAATATATTAGGTGCTGTGTATGAACGCCAGGGACGAGCTGACGATGCTGTCAGGCTTTATGAGGAGATGTCCGAACAGTTCCCTTCCGAGGATGAACTTCGGTTCAAACTGGCCAATATGTACGTACAGGCCGGAGAGATAGACAAGGCCATATACATATACAACCGTATGGAGGCACAAAATGCTGTCAATGCAGCAGATGCCTCCAACTATGCTGAGATTCGGGCACGTCTCTACCTGATGACCGGTCAGACCAACAAGGCTCTGAACGAACTTCGCCGTCTATGCAATCGATTCCCGGAAGTGAATGAGTTTAGGCTGAAGTATGCCGGCACTCTGCTCGACAGTGAGAAGTACGACGAAGCCTACGAGCAACTGCAACTGATAGCTCGGACGGATTCGACAAGTGGCTTGTATCATTTTGCTATGGCCAGCTATTACTTGGGAACGAACGAAAAAGAAGCTGCCATCAACGAAATGATCAAAGTAGCCGCTGACAAGGATGTGGCACCGGAGCAGAAACTACCGATCATCCTGCGCTTTATCGGTACCGACACAGACGAAGAGGATGCACCGAAAAAAGAGTATAATATCCTGCTTGAAAAGATACTTGCCAGCCATCCCACTGAGGTGGATGCACGCCTTTTCTATGCCGAGCTCTTGGAAATGCAGGGTGATTCTATCCATGCCATGGAGGTTTGCCGACCTATCACGGAGTTTGCTCCTAAAGAAGAACGGGCATGGAAATTCATGCTGGGAAGAGCTGTTACCGGCCAGAACCATACCGAAGTCCATCGCATATCCGAACAAGCGCGACAATATTTGCCGGGTGTGCCGCTATTTTACCTCTACGATGCCATTTCCTATTATATAGAGAAAAAAGGTTCAGAAGCCAAGCACATACTGCAAGAAGCATTGGAGCATATCGATGCAGAGAAAGATCCCAACGGCCTATCGGATATTTATAGCCAATTAGGCGATCTTGCCTATGAAGAAAATAAGCCTGAAGAAGCCTTCGCAAACTACGAAAAAGCGTTGGAGTTGAACCCGCGCAACGTGGGAGTACTCAATAATTATGCGTATTTCTTGGCCAAAGAAGGCGGTGATCTGGCCAAAGCCGAAAGAATGGCAGCCCAATGCGTCAAGCTGTTACCGGACAATGCGGTCTCGCTCGACACTTATGGTTGGGTATTCTTTCTAAGAGAAAACTATACGTTGGCCAAACTCTACATAGAAAAAGCCTTAGGACTGGCTGCAGACAACCCCGATGCTGATGTCGTAGAGCACCATGGCGATGTCCTCTATATGCTCGGAGAGAAAGAAAAAGCTATGTTGGAATGGAAACGGGCCAAAGAGATCGGTGGAGGAGGCAGTCCCATGCTAGACAAGAAAATAGAACAAGGAAAATATATCCCAGAAAAGAAGAAA","4.90","-21.45","66139","MRIHSIILLLFLLVISPVAGSISITDSTASKFDRYFYEGVRQREQENYAAAFDIFRYCHRLNPNDAALLSELGKLYIAIGRQEEGTRYLEQAYRLYPDNKNYGNILGAVYERQGRADDAVRLYEEMSEQFPSEDELRFKLANMYVQAGEIDKAIYIYNRMEAQNAVNAADASNYAEIRARLYLMTGQTNKALNELRRLCNRFPEVNEFRLKYAGTLLDSEKYDEAYEQLQLIARTDSTSGLYHFAMASYYLGTNEKEAAINEMIKVAADKDVAPEQKLPIILRFIGTDTDEEDAPKKEYNILLEKILASHPTEVDARLFYAELLEMQGDSIHAMEVCRPITEFAPKEERAWKFMLGRAVTGQNHTEVHRISEQARQYLPGVPLFYLYDAISYYIEKKGSEAKHILQEALEHIDAEKDPNGLSDIYSQLGDLAYEENKPEEAFANYEKALELNPRNVGVLNNYAYFLAKEGGDLAKAERMAAQCVKLLPDNAVSLDTYGWVFFLRENYTLAKLYIEKALGLAADNPDADVVEHHGDVLYMLGEKEKAMLEWKRAKEIGGGGSPMLDKKIEQGKYIPEKKK","1013328 1015064","TIGR ID: PG0954","conserved hypothetical protein","Cytoplasm, Periplasm","Numerous weak hits in gapped BLAST; e.g. residues 83-556 are 24% similar to gb|AAC06984.1| hypothetical protein of Aquifex aeolicus, residues 80-551 are 22% similar to emb|CAA57572.1| orf3 of Pseudomonas aeruginosa, residues 80-551 are 22% similar to gb|AAG08054.1|AE004880_10 hypothetical protein of Pseudomonas aeruginosa.","
InterPro
IPR001440
Repeat
Tetratricopeptide TPR_1
PF00515\"[422-455]T\"[498-524]TTPR_1
InterPro
IPR006162
PTM
Phosphopantetheine attachment site
PS00012\"[325-340]?PHOSPHOPANTETHEINE
InterPro
IPR011990
Domain
Tetratricopeptide-like helical
G3DSA:1.25.40.10\"[35-289]T\"[303-410]T\"[418-556]TTPR-like_helical
InterPro
IPR013026
Domain
Tetratricopeptide region
SM00028\"[32-65]T\"[66-99]T\"[134-167]T\"[422-455]T\"[491-524]TTPR
PS50005\"[32-65]T\"[66-99]T\"[100-133]T\"[134-167]T\"[172-205]T\"[422-455]T\"[491-524]TTPR
PS50293\"[32-560]TTPR_REGION
InterPro
IPR013105
Repeat
Tetratricopeptide TPR_2
PF07719\"[66-99]TTPR_2
noIPR
unintegrated
unintegrated
PTHR23083\"[55-556]TPTHR23083
PTHR23083:SF5\"[55-556]TPTHR23083:SF5
SSF48452\"[30-275]T\"[303-556]TSSF48452


","BeTs to 11 clades of COG0457COG name: TPR-repeat-containing proteinsFunctional Class: RThe phylogenetic pattern of COG0457 is AMTKYQVCEB-HUJ--OLINXNumber of proteins in this genome belonging to this COG is 21","No significant hit to the Blocks database.","Residues 449-556 are 35% similar to a (HYPOTHETICAL 64.1 KD PROTEIN) protein domain (PD062006) which is seen in O67021_AQUAE.Residues 35-269 are 24% similar to a (PROTEIN REPEAT TPR DOMAIN NUCLEAR PUTATIVE RECEPTOR) protein domain (PD000069) which is seen in O67021_AQUAE.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Wed Jan 17 11:46:27 MST 2001","Fri Jan 12 12:03:33 2001","Wed Jan 17 11:27:27 MST 2001","Fri Jan 12 12:03:33 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 80-301 are 24% similar to PG1718, reisudes 63-197 are 28% similar to PG1718, residues 416-537 are 30% similar to PG0906.","Fri Jan 12 12:03:33 2001","","No significant hits to the PDB database (E-value < E-10).","","","Residues 422 to 455 (E-value = 2.8e-07) place PG0853 in the TPR family which is described as TPR Domain (PF00515)","","34540706","","","","","","1","","","PG0954" "PG0854","1014974","1015924","951","ATGGAAACGGGCCAAAGAGATCGGTGGAGGAGGCAGTCCCATGCTAGACAAGAAAATAGAACAAGGAAAATATATCCCAGAAAAGAAGAAATGATGCTTAGGAAGAAGTTTGGCCCCCTTGGGATTTCATTTATCGTCGTTATCTTTTTTGTGTCGTTGCTTGTCGCAGGATGCGGTTCCACCCATACATTCGGGTCCATATCCGGTGCCGGCAACGATATGGAAGTCAGTAGCCCTGCTGCTCTTTTTGCCAATATCAAGGAGCACTACCCTCGACAGGACAGATTCAGTGCAACGGGCAAAGCTATTCTCCGATTCGATCAAAAGGAGGTGAATACACGTATCGAATTGACCCTCGTTCGCAATCGTGGTATCCGCCTCGTTGCCATGCCTTTTCCTCTCGTAGTGGCAGGGCGTGCATGGATTACACCCGAAGGTATGACAGTAACTGATGCCATTAACAAACGCTACGTAACAGCCTCTTATTCGCAGCTTAGCGAACTCACCGGTATCGAACTCTCCTATCGTGCCTTCGAATCGCTTTTCCTCGCACAGCTATTCAAAGCTGATGGTGCTTCCATTGTGGCATCGGATCTTTTACTTTCGACCGGTGCACAAAAGGGACATTTGCTTTCCTATCAAGACAACCGAAAAATGGAATATATATCAGAAATCGGTAGCAATAGGCGACCTCTTTCCATCAGTATATACGATCCCTCCACCCACTATAGGCTTGCTACTACCTATTCTTCTTTCCGAGAGTATGGTGCCGAGCATAATTTGCCGGCAAACTTTCTTTTGCAAGTACTGCATCTCGGGCAGGTCAAAGGCTCTCTTTCCCTCGATCTGTCTAAGATGAGATTTACAGACATTGATGAAACAGATGTAATCCCTCGCGTCAATACTTCCACCTATCGCAGAATGACGTTGGAAGATCTCTCCGAGCTTTTC","10.30","9.65","35894","METGQRDRWRRQSHARQENRTRKIYPRKEEMMLRKKFGPLGISFIVVIFFVSLLVAGCGSTHTFGSISGAGNDMEVSSPAALFANIKEHYPRQDRFSATGKAILRFDQKEVNTRIELTLVRNRGIRLVAMPFPLVVAGRAWITPEGMTVTDAINKRYVTASYSQLSELTGIELSYRAFESLFLAQLFKADGASIVASDLLLSTGAQKGHLLSYQDNRKMEYISEIGSNRRPLSISIYDPSTHYRLATTYSSFREYGAEHNLPANFLLQVLHLGQVKGSLSLDLSKMRFTDIDETDVIPRVNTSTYRRMTLEDLSELF","1014974 1015924","TIGR ID: PG0955","hypothetical protein","Outer membrane, Inner membrane, Cytoplasm","No significant hits in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-60]?signal-peptide
tmhmm\"[37-57]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Jan 12 12:07:38 2001","Fri Jan 12 12:07:38 2001","Fri Jan 12 12:07:38 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540707","","","","","","1","","","PG0955" "PG0855","1015939","1017231","1293","ATGAAGTTTTCAATCCGCCTTTTCCTCTGCATCATCTTTCTCCTCTCTGCATTTATCCTGCCTGCTCTCGGACAAAAATCCAAGCAGGTACAGCGACTTGAGAAGCAACGTAAGGAGGCCCTCAAAGCCATCGAAAAAACCGATCGCGAACTACGAAATACCAAGAAAGACAAGCAAGACAAACAAAAGCATCTCAACCTCCTGAACAAGCAGGTTGCTCAACGCAAGCAGATGGTACAACTCTTGGACAATGAGGTCAAAGAGTTGCAATCCGACATTGATTCCATGACGGGTGTATGTCATCAGCTCTCTGTAGAAGAGAAAGCCCGATCCGATGAATATGCCCAAGCTCTACAGTCTATGCAAAAGCGGAAACGCTCGTTGGATCGCATCCTTTTCATTTCATCGGCCAAGAGCTTTGACGAAGGCATGCGACGGATGCGTTTCTTGGAACAATACGCTTCTGCATACAAGCTGGCATCTGTCCGGCTGCGCGATACACGTAGCAAGTTGGAGACTGAACGTGCGACTGTAGAAGACGCCAAAAAGGAGAAAGGACATCTCTTAGTCATCAGAGAAGAGGAAAAAAAGAAACTCGAAGGACAGCAAGCCGAGCAACGTCGGCAGGTGCAGGCTTTGGGAGCCAAACAAAAAGACTTGGAAGCGCAGCTGCGAAAGCAGAAAAAGCAAGCCGAAGCTCTGAACAGAAAGATCGAGAAACAGATTGCCAAGGAAATAGAAGCTGCCGAACGTCGTGCTCGAGAAGAACGTGAACGGTTGGCACGCGAAGCCAAAGCCAAGGGTAAGCCGGTTCCTGCCGAACCGGAACGGAAGGCGGAGACCAAAGGCGGCTATGCTATGGATGCCTCTGAGCGTGCTCTCTCGGGCAGCTTTGCACAGAACAAAGGTCGCCTGCCCGGCCCCGTTCGCGGCAGATACCGAATCGTAAGCGACTTTGGCGTGCATCAGCACAGTGAGCTGAAAAAAGTACAAGTTAATAATGGAGGTATCGACATCGCTGTAGCAACAGGATCCGATGCTACCAGCGTATTCGATGGTGTAGTGTCCAGTGTATTCGTGATACCCGGTTATAATTCGGCCGTAATGGTTCGTCACGGTAACTATATCACGGTTTATGCGAATCTGAGCAAAGTGTATGTAAATTCCGGCACTCGTGTTAAAACGGGTCAGGCTCTTGGTCGTGCCTATACGGATCCTTCCAACAACCAGACCATTATTCACTTCGAAATCTGGAAAGAACGCAGCAAACAAAACCCAAGACTATGGTTACGA","10.80","33.63","49234","MKFSIRLFLCIIFLLSAFILPALGQKSKQVQRLEKQRKEALKAIEKTDRELRNTKKDKQDKQKHLNLLNKQVAQRKQMVQLLDNEVKELQSDIDSMTGVCHQLSVEEKARSDEYAQALQSMQKRKRSLDRILFISSAKSFDEGMRRMRFLEQYASAYKLASVRLRDTRSKLETERATVEDAKKEKGHLLVIREEEKKKLEGQQAEQRRQVQALGAKQKDLEAQLRKQKKQAEALNRKIEKQIAKEIEAAERRAREERERLAREAKAKGKPVPAEPERKAETKGGYAMDASERALSGSFAQNKGRLPGPVRGRYRIVSDFGVHQHSELKKVQVNNGGIDIAVATGSDATSVFDGVVSSVFVIPGYNSAVMVRHGNYITVYANLSKVYVNSGTRVKTGQALGRAYTDPSNNQTIIHFEIWKERSKQNPRLWLR","1015939 1017231","TIGR ID: PG0956","conserved hypothetical protein (possible membrane protein)","Periplasm, Cytoplasm","Numerous weak hits in gapped BLAST; e.g. residues 7-431 are 21% similar to gb|AAG08518.1|AE004926_8 conserved hypothetical protein of Pseudomonas aeruginosa, residues 29-417 are 20% similar to dbj|BAB07319.1| cell wall-binding protein of Bacillus halodurans,residues 23-430 are 19% similar to gb|AAC76637.1| putative membrane protein of Escherichia coli K12.","
InterPro
IPR002886
Family
Peptidase M23B
PTHR21666:SF7\"[1-92]T\"[260-431]TPeptidase_M23B
PF01551\"[332-426]TPeptidase_M23
InterPro
IPR011055
Domain
Duplicated hybrid motif
SSF51261\"[220-430]TDup_hybrid_motif
noIPR
unintegrated
unintegrated
PTHR21666\"[1-92]T\"[260-431]TPTHR21666


","BeTs to 4 clades of COG0739COG name: Membrane proteins related to metalloendopeptidasesFunctional Class: MThe phylogenetic pattern of COG0739 is -----QVCEBRHUJ--OL--XNumber of proteins in this genome belonging to this COG is 2","***** PF01551 (Peptidase family M23/M37) with a combined E-value of 3.1e-09. PF01551A 334-359 PF01551B 368-406","Residues 27-230 are 21% similar to a (PROTEIN COILED COIL REPEAT FILAMENT HEPTAD PATTERN CHAIN) protein domain (PD000002) which is seen in MYSS_CHICK.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Jan 12 12:12:45 2001","Fri Jan 12 12:12:45 2001","Fri Jan 12 12:12:45 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540708","","","","","","1","","","PG0956" "PG0856","1017222","1018190","969","ATGGTTACGATAGCCATTCCCAACGACTATAATACCCCATTTCGAGATCTTCCCTGGATTCCGAAAGTGGCTGCTACGATCGGTACATTCGATGGCATACACTTCGGGCATCGCTTTCTTCTCGATCAGCTCAAAAAGATGGCGAAAGAGAAGCATCTGCCTACTATGGTAATAACCTTCGACGTCCCTCCCATATCAGTGGTTCGCCCGGGAACACCCTACCAGAAGCTGACTACAATAGGCGAAAAACTCCTCAGACTTGAAGCGGAAGGAGTAGACTATACAGTGGTGCTGCCTTTTACACCCGAATTAGTAGCAATGACGGCCGACACTTTCATTACAACCATCCTGCACAAACGACTCCATGTAAAAGCCTTGCTCATTGGCTATGATCACCGATTCGGACATGGACGCATATCCGGTTTGGAAGAATACAAACAGATAGCTACTCCATTGGGTATAACGGTAAAGAAAGCTTCGCAGGCTGAGATCGGTGGAGTGCCGGCCAGCTCCAGTGCCGTACGCCAAGCCCTGATAGACAATAATCTTGCTTTGGCCAATCAGCTATTGGGGTATGACTATATATTGACGGGAAAGGTGGAGCATGGTTTTAGGATTGGGCGCGAATTGGGATTCCCGACGGCCAATCTGACTGTAAGCGACAGTCACAAGTTGATCCCCTGCGATGGGGTCTATGCCGTCAGAGCCATTGTAAGTGGCGAACGATACAATGGCATGTTGTATATAGGTCGCAGGCCGACGTTGAACAACGGTGACCAGCGAACGATCGAAGTCAATCTCTTCGAATTTGATAAAACTATCTACGGATCTCAGATACGAGTGGAGTTTGTATCCTTTATCAGAGAGGATATGAAGTTCGATAGTTTGGAAGCTCTTCGTCAACAAATACAAGCCGACTACGGCCGGATCTCAGCTCTCTTCGAGTCCGAGCAATCCGAGTACTCTGAG","7.00","0.00","36147","MVTIAIPNDYNTPFRDLPWIPKVAATIGTFDGIHFGHRFLLDQLKKMAKEKHLPTMVITFDVPPISVVRPGTPYQKLTTIGEKLLRLEAEGVDYTVVLPFTPELVAMTADTFITTILHKRLHVKALLIGYDHRFGHGRISGLEEYKQIATPLGITVKKASQAEIGGVPASSSAVRQALIDNNLALANQLLGYDYILTGKVEHGFRIGRELGFPTANLTVSDSHKLIPCDGVYAVRAIVSGERYNGMLYIGRRPTLNNGDQRTIEVNLFEFDKTIYGSQIRVEFVSFIREDMKFDSLEALRQQIQADYGRISALFESEQSEYSE","1017222 1018190","TIGR ID: PG0957","riboflavin kinase/FAD synthase","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 11-313 are 36% similar to gb|AAC06488.1| riboflavin kinase of Aquifex aeolicus, residues 25-306 are 37% similar to gb|AAG07949.1|AE004869_13 riboflavin kinase/FAD synthase of Pseudomonas aeruginosa, residues 26-306 are 39% similar to sp|P08391|RIBF_ECOLI riboflavin biosynthesis protein ribf (includes: riboflavin kinase; fmn adenylytransferase) of E.coli.This sequence is similar to CT093.","
InterPro
IPR002606
Family
Riboflavin kinase / FAD synthetase
PD003662\"[192-306]TFAD_Synth
PF01687\"[189-315]TFlavokinase
PF06574\"[21-173]TFAD_syn
TIGR00083\"[24-315]TribF
noIPR
unintegrated
unintegrated
G3DSA:2.40.30.30\"[171-314]TG3DSA:2.40.30.30
PTHR22749\"[190-315]TPTHR22749
SSF52374\"[24-192]TSSF52374
SSF82114\"[179-315]TSSF82114


","BeTs to 11 clades of COG0196COG name: FAD synthaseFunctional Class: HThe phylogenetic pattern of COG0196 is ----yqvceBrhujgp-lin-Number of proteins in this genome belonging to this COG is 1","***** PF01687 (Riboflavin kinase / FAD synthetase) with a combined E-value of 6.5e-38. PF01687A 121-135 PF01687B 198-217 PF01687C 263-306","Residues 189-306 are 44% similar to a (PROTEIN RIBOFLAVIN KINASE BIOSYNTHESIS) protein domain (PD003662) which is seen in RIBF_HAEIN.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Mar 22 12:08:29 MST 2000","Fri Jan 12 17:12:27 2001","Fri Jan 12 17:12:27 2001","Fri Apr 20 12:56:31 MDT 2001","Fri Apr 20 12:56:31 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Apr 20 12:56:31 MDT 2001","-49% similar to PDB:1MRZ Crystal structure of a flavin binding protein from Thermotoga Maritima, TM379 (E_value = 3.1E_25);-49% similar to PDB:1S4M Crystal structure of flavin binding to FAD synthetase from Thermotoga maritina (E_value = 3.1E_25);-49% similar to PDB:1T6X Crystal structure of ADP bound TM379 (E_value = 3.1E_25);-49% similar to PDB:1T6Y Crystal structure of ADP, AMP, and FMN bound TM379 (E_value = 3.1E_25);-49% similar to PDB:1T6Z Crystal structure of riboflavin bound TM379 (E_value = 3.1E_25);","","","Residues 21 to 173 (E-value = 2.2e-56) place PG0856 in the Flavokinase family which is described as Riboflavin kinase (Flavokinase) (PF06574)Residues 189 to 315 (E-value = 1.8e-35) place PG0856 in the FAD_Synth family which is described as Riboflavin kinase / FAD synthetase (PF01687)","Fri Apr 20 12:56:31 MDT 2001","34540709","","","","","","1","","","PG0957" "PG0857","1019462","1018230","1233","ATGATCAATTCTTTCAAATCTGTTTTCCTCACGATCCGCTACTTTATCCAAAATGATCTGGCTACACAGGCATCTGCTCTCACTTACCGTACGATCCTCTCCATCGTACCGATGCTTGCCGTCCTGATCGGTATTGCCAAGGGTTTCGGTATTCAGCAGGTGGTACATGATTGGCTCAAAGAATATCTCCCTGGTCATCAGCAGGAGTTGGAACAGGCATTAGGCTATGTGGAAAACTATCTGGCACAAGTGCAAGGCGGTATCTTCGTCGGTGTCGGTCTTATCGTACTGCTCTACACGGTCTTTTCTTTGATTGCCACTGTGGAAGACACCTTTACCGATATTTGGCAAACCAATAAAAGACGCACTTGGAAACGGAGGGTAATCGATTATATGGGAGCTTTTTTCCTGTTGCCAATCCTGATCACGGCATCCAGTGGTCTCACCCTAATGATGACTACGATCAAGGGAACATACTTCAGCGAATATATCCTCTTCGGCCCTATGCTGGAGTTGATCCTGAATCTGATACCTTACGTGATTATCGTTCTACTTTTTACCGGTATGTATATCGTATTACCCACAGTAAACGTCCGGTTTTGGCCGGCATTTATTTCTGGAGTGCTGGCCGGTATCGTTTTCCAGATATTCCAAGCTCTTTATATCAGTGGTATCCTTTGGATCTCGAAATACAATGCCATATACGGTAGCTTCGCTGCAGTACCCCTTTTGCTCCTTTGGATACAGCTCTCATGGACTATTGTTCTGTTCGGAGCACAACTGAGTTTCTCCATTCAGAATGTCAGGAAATTTGCTTTTGAGAGGGATACGACCAATGTTTCGCGCCGTTATATCGATTTCATAACAATCGTTGTAGCCTCATTGATCGTTAAGCGTTTCATATCGGACGAACGCCGCCCCCATACAGCGGATTCGCTTGCAGAAGAAAGCAAAGCTCCGATCCGATTAGTGTCAGAAGCCATACACCGCCTGCTTTCCATCGAAGCCATAACGGAAGTGAATTATGCACACGATCCCAAGGCCGAATTTTTCAGTCCAGCGATAGATCCCGAGAAAATAACGGTGGGCTTCATTCTCGATCGTATAGATCGTTATGGGAGCGAACACTTCAAGGTAGACAATAAGGTCCGATTCGCTCCCGAATGGCAAGCGATAGAGGATTCCCGTCAGAGCCTGCACATCCCCCCTGCGGACACGCTACTAAAGAATTTG","8.00","1.70","46756","MINSFKSVFLTIRYFIQNDLATQASALTYRTILSIVPMLAVLIGIAKGFGIQQVVHDWLKEYLPGHQQELEQALGYVENYLAQVQGGIFVGVGLIVLLYTVFSLIATVEDTFTDIWQTNKRRTWKRRVIDYMGAFFLLPILITASSGLTLMMTTIKGTYFSEYILFGPMLELILNLIPYVIIVLLFTGMYIVLPTVNVRFWPAFISGVLAGIVFQIFQALYISGILWISKYNAIYGSFAAVPLLLLWIQLSWTIVLFGAQLSFSIQNVRKFAFERDTTNVSRRYIDFITIVVASLIVKRFISDERRPHTADSLAEESKAPIRLVSEAIHRLLSIEAITEVNYAHDPKAEFFSPAIDPEKITVGFILDRIDRYGSEHFKVDNKVRFAPEWQAIEDSRQSLHIPPADTLLKNL","1019654 1018230","TIGR ID: PG0958","BN ribonuclease","Inner membrane, Cytoplasm","Numerous significant hits in gapped BLAST but all to center of the predicted orf; e.g. residues 15-261 are 29% similar to gb|AAG04340.1|AE004529_6 probable ribonuclease of Pseudomonas aeruginosa, residues 24-265 are 29% similar to gb|AAF95881.1| ribonuclease BN of Vibrio cholerae.This sequence is similar to BT1315.","
InterPro
IPR004664
Domain
Ribonuclease BN
PF03631\"[16-269]TRibonuclease_BN
TIGR00765\"[6-268]TyihY_not_rbn


","BeTs to 8 clades of COG1295COG name: tRNA-processing ribonuclease BNFunctional Class: JThe phylogenetic pattern of COG1295 is -----q-cEbRhuj----inxNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 22-239 are 21% similar to a (PROTEIN RIBONUCLEASE BN RNASE) protein domain (PD007690) which is seen in O85449_BBBBB.","","Wed Jun 13 17:51:08 MDT 2001","","Wed Jun 13 17:51:08 MDT 2001","Wed Jun 13 17:51:08 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Jun 13 17:51:08 MDT 2001","Wed Jun 13 17:51:08 MDT 2001","","","Thu Dec 4 13:24:22 2003","Thu Dec 4 13:24:22 2003","Tue Dec 17 16:19:57 2002","","Mon Jun 18 13:10:58 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 22 19:19:52 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 16 to 269 (E-value = 3.8e-35) place PG0857 in the Ribonuclease_BN family which is described as Ribonuclease BN-like family (PF03631)","Mon Jun 18 13:10:58 MDT 2001","34540710","","","","","","1","","","PG0958" "PG0857.1","1019431","1019889","459","GTGAGGAAAACAGATTTGAAAGAATTGATCATCAACCGACTTGGTACCGAAACCTCTTCGTCCGTTATGCGCCACATATCTCGGGTGACAAAAAGAATCATTCGGTTTATCCGGATGGACCACCGCCTGAAAAAGCCCTTATCGTTCTTTTTCTCTTTCTCGTCAATGCTCTCTTTCATACAAATCAATGAGTTAAATACCGTTGGTAAATCAATGTCCGGCATATCTCACCCCAAGGAGATTGCCGAAGAAAGAGGAAAAAAGCAGCAGATCTGTAAGCCGGGTTCTGTACTCACGGCCACACGTAGCCAGAGCGTCTGTCATTTATCTTGGCCGTGCGTCACCGCATGGCTCCAGCGATCTACCCCCCGGCATCGGGCGAGCCACCCTACATGCGCCGGTATACATGATCTTACAACCCATCAGACGTACGGCATGCAGCGTCACCGCTGCATCCGG","","","17596","VRKTDLKELIINRLGTETSSSVMRHISRVTKRIIRFIRMDHRLKKPLSFFFSFSSMLSFIQINELNTVGKSMSGISHPKEIAEERGKKQQICKPGSVLTATRSQSVCHLSWPCVTAWLQRSTPRHRASHPTCAGIHDLTTHQTYGMQRHRCIR","","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm, Periplasm","No hits in gapped BLAST.","
InterPro
IPR001917
Binding_site
Aminotransferase, class-II
PS00599\"[67-76]?AA_TRANSFER_CLASS_2


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Fri Jan 12 17:18:22 2001","Fri Jan 12 17:18:22 2001","Fri Jan 12 17:18:22 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG0858","1021233","1020118","1116","ATGGCATACGTAACATTATATCCCAATCTTATTCTCGAAGCCCTTGGTAAAGTTCGCTATCCGGGGACAGGAAAAGATTTGGTTTCGGCCGGAATGGTAGAGGACGATATCAGAATCGATGGCAATAAGGTATCGTTTTCACTCATATTCGACAAAGCGAACGATCCATTCATCAAATCAGTGGTCAAAGCAGCTGAATCAGCCATCCTGACATATATCAGCGAAGACGTCAATATCAAAGGCAATATCTCTGTCAAGAGCAAACAGGCAATACCTGCTCCTCCGGCCAAACTTCTGCCCGGGGTGAAGAATATCATTGCTGTTTTCTCAGGCAAAGGCGGTGTCGGGAAGAGTACCGTTACGGCTAATCTGGCCGTCTCTCTGGCCAAATCCGGCTATCGGGTAGGACTTTTGGACGCCGACATATTCGGCCCATCTATGCCTAAGATGTTCCACTGCGAAGAGTCACGTCCCGTACTTGAAGAAGTGGACGGACGCGAATTGATCGTTCCCGAAGAGGTGATGGGCGTGAAAATCCTCTCTATCGGATTCTTCGTGGATCCGGACAATGCTGTTCTCTGGCGCGGAAGTATGGCAGGCAATGCCCTGACACAGCTTATCCGCGATGCCAATTGGGGAGAGTTGGACTACTTCCTGATCGATATGCCTCCGGGAACGAGCGACATCCACCTGACACTTGTACAGACGCTGGCTATTACCGGAGCCGTTGTAGTGACGACACCGCAGGACGTAGCCTTGGCTGATGCTCGGAAAGGAATCAGTATGTTTGTCGGAGAGAAGATCAATGTGCCGGTACTCGGTTTGGTGGAAAACATGTCGTGGTTCACACCGGCCGAACTGCCACAGAACAAATACTACATCTTCGGGCGTGATGGCGGTAAGAATTTAGCCGAGGAGTTGAATATTCCCTTGCTCGGACAGATTCCGCTGGTGCAGGGTATATGCCAAAGCGGGGACGAAGGAATACCCGTTGCTGTTCGGGATGATTCGATGATGGGAATTGCTTTCCGCGAATTGGCTGCCCGAGTGGTAGAGCAAGTGGACTATCGCAATGAACATCTTGATCCGACCAAGGTCGTAGAGGTGGCACATAGA","4.80","-10.11","40165","MAYVTLYPNLILEALGKVRYPGTGKDLVSAGMVEDDIRIDGNKVSFSLIFDKANDPFIKSVVKAAESAILTYISEDVNIKGNISVKSKQAIPAPPAKLLPGVKNIIAVFSGKGGVGKSTVTANLAVSLAKSGYRVGLLDADIFGPSMPKMFHCEESRPVLEEVDGRELIVPEEVMGVKILSIGFFVDPDNAVLWRGSMAGNALTQLIRDANWGELDYFLIDMPPGTSDIHLTLVQTLAITGAVVVTTPQDVALADARKGISMFVGEKINVPVLGLVENMSWFTPAELPQNKYYIFGRDGGKNLAEELNIPLLGQIPLVQGICQSGDEGIPVAVRDDSMMGIAFRELAARVVEQVDYRNEHLDPTKVVEVAHR","1021233 1020118","TIGR ID: PG0959","ATP-binding protein, Mrp/Nbp35 family","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 3-354 are 41% similar to dbjBAA10297.1 put. ATPase of Synechocystis sp, residues 11-354 are 43% similar to >gbAAG19516.1 Mrp protein homolog; Mrp of Halobacterium sp. NRC-1, residues 15-336 are 43% similar to embCAB83901.1 hypothetical protein NMA0611 of Neisseria meningitidis Z2491.This sequence is similar to BT3895.","
InterPro
IPR000897
Domain
GTP-binding signal recognition particle SRP54, GTPase
PD000819\"[111-164]TSRP54
InterPro
IPR002586
Domain
Cobyrinic acid a,c-diamide synthase
PF01656\"[106-258]TCbiA
InterPro
IPR002744
Domain
Protein of unknown function DUF59
PD005595\"[11-48]TDUF59
PF01883\"[7-81]TDUF59
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[102-350]TG3DSA:3.40.50.300
PTHR23264\"[142-371]TPTHR23264
PTHR23264:SF4\"[142-371]TPTHR23264:SF4
SSF52540\"[86-336]TSSF52540


","BeTs to 13 clades of COG0489COG name: ATPases involved in chromosome partitioning, mrp familyFunctional Class: DThe phylogenetic pattern of COG0489 is AmtKYqvCEBrhuj------xNumber of proteins in this genome belonging to this COG is 2","***** IPB000808 (Mrp family) with a combined E-value of 2.1e-65. IPB000808A 102-140 IPB000808B 192-233 IPB000808C 257-280 IPB000808D 298-317***** IPB000392 (NifH/frxC family) with a combined E-value of 1.9e-09. IPB000392A 111-149","Residues 105-354 are 47% similar to a (PROTEIN ATP-BINDING PLASMID REDUCTASE IRON-SULFUR 4FE-4S) protein domain (PD000159) which is seen in MRP_SYNY3.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Jun 16 16:03:26 2004","Wed Jun 16 16:03:26 2004","Fri Jan 12 17:22:02 2001","Fri Mar 9 14:33:31 MST 2001","Fri Mar 9 14:33:31 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Jun 16 16:03:26 2004","-48% similar to PDB:1G3Q CRYSTAL STRUCTURE ANALYSIS OF PYROCOCCUS FURIOSUS CELL DIVISION ATPASE MIND (E_value = 9.5E_13);-48% similar to PDB:1G3R CRYSTAL STRUCTURE ANALYSIS OF PYROCOCCUS FURIOSUS CELL DIVISION ATPASE MIND (E_value = 9.5E_13);-49% similar to PDB:1ION THE SEPTUM SITE-DETERMINING PROTEIN MIND COMPLEXED WITH MG-ADP FROM PYROCOCCUS HORIKOSHII OT3 (E_value = 2.1E_12);-45% similar to PDB:1HYQ MIND BACTERIAL CELL DIVISION REGULATOR FROM A. FULGIDUS (E_value = 4.7E_12);","","","No significant hits to the Pfam 11.0 database","Fri Mar 9 14:33:31 MST 2001","34540711","","","","","","1","","","PG0959" "PG0859","1021987","1021256","732","ATGGAGACGTTCCCTCACGTCTTCCAATATCCTTTTGCCGTTTTGCAGCAACAGGAGAGCGGTTTTCCGCTAAGGGGGCGTTGGCACACGGACTTTTTCCACAACGATCATCCCATAGTCTTGGAACTGGGTTGCGGGAGAGGAGAATATACGGTAGGTCTGGGCAAGCGGTTTCCGGAGAAAAATTTTATCGGCATCGACATCAAAGGAGCTCGCATGTGGGCCGGTGCCAAAGAGTCTCTTCAAGAAGGGATGTCCAACGTAGCTTTCCTTCGGACGGATATAGAGCTTTTGGATCGGTTCTTTGCCGAAGGAGAGGTAGCCGAAATATGGATCACTTTCCCCGATCCGCAGATGAAGAAAGTAGGCAAGCGACTGACCGGAACGCGGTTCCTCTCGCTCTATGACAAAGTACTCGAAAGGGGGGGACGTATCCATCTGAAAACGGATAGCCCTTTCCTCTATACCTATACGAAGGCGTTGGTCGAACTCAACGGCCTGCCCGTACACGAGATAACGGATGATCTGTACGGCAAAGGATGCGTAGAGAATGAAATCCTCGGCATCCGAACATATTACGAACAACAGTGGCTGGAACGAGGTCTGACGATCAAGTACATCAGCTTTGGCTTGGGAGAACCTGACTGCGAGTATCGAGAACCCGATATTGAAATCGAACCTGACAGCTACCGCAGTTACAATCGCTCCAGAAGAAGTCAGGCAGTTCCTTCC","5.70","-4.68","28200","METFPHVFQYPFAVLQQQESGFPLRGRWHTDFFHNDHPIVLELGCGRGEYTVGLGKRFPEKNFIGIDIKGARMWAGAKESLQEGMSNVAFLRTDIELLDRFFAEGEVAEIWITFPDPQMKKVGKRLTGTRFLSLYDKVLERGGRIHLKTDSPFLYTYTKALVELNGLPVHEITDDLYGKGCVENEILGIRTYYEQQWLERGLTIKYISFGLGEPDCEYREPDIEIEPDSYRSYNRSRRSQAVPS","1022026 1021256","TIGR ID: PG0960","tRNA (guanine-N(7))-methyltransferase","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 7-204 are 33% similar to dbjBAB06980.1 BH3261 an unknown conserved protein of Bacillus halodurans, residues 25-204 are 32% similar to gbAAC00285.1 YtmQ of Bacillus subtilis, residues 39-199 are 33% similar to gbAAC71572.1 conserved hypothetical protein of Mycoplasma genitalium.","
InterPro
IPR003358
Family
Putative methyltransferase
PF02390\"[17-212]TMethyltransf_4
noIPR
unintegrated
unintegrated
PTHR23417\"[27-235]TPTHR23417
PTHR23417:SF1\"[27-235]TPTHR23417:SF1
SSF53335\"[14-207]TSSF53335


","BeTs to 12 clades of COG0220COG name: Predicted S-adenosylmethionine-dependent methyltransferaseFunctional Class: RThe phylogenetic pattern of COG0220 is ----yqvcebrhujgp-linxNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 28-204 are 32% similar to a (PROTEIN METHYLTRANSFERASE HOMOLOG) protein domain (PD005334) which is seen in O34522_BACSU.","","Wed Jun 13 17:47:07 MDT 2001","","Wed Jun 13 17:47:07 MDT 2001","Wed Jun 13 17:47:07 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Jun 13 17:47:07 MDT 2001","Wed Jun 13 17:47:07 MDT 2001","","","Wed Jul 23 13:35:49 2008","Wed Jul 23 13:35:49 2008","Fri Jan 12 17:25:36 2001","","Mon Jun 18 13:14:44 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Jul 23 13:35:49 2008","-54% similar to PDB:1YZH Crystal Structure of the Conserved Hypothetical Protein, Methyltransferase from Streptococcus pneumoniae TIGR4 (E_value = 3.7E_22);-54% similar to PDB:2FCA The structure of BsTrmB (E_value = 4.8E_22);","","","Residues 17 to 212 (E-value = 4.3e-16) place PG0859 in the Methyltransf_4 family which is described as Putative methyltransferase (PF02390)","Mon Jun 18 13:14:44 MDT 2001","34540712","","","","","","1","","","PG0960" "PG0860","1022364","1022038","327","ATGGCAGAAGAAATCCAAATGTACGACGATGCGGCATCCGTGGCTTTTATTCGCAATTTCATCCCGCAGGAATTGAAAGAGAAAATGACCGATGACGACATTGTTTACATCGTCGATCTGATTTACGATTTCTACGAGAGTCGCGGCTTCATGGATATGGCCGAGGACAGCGAGGAAACAGTGGAGGTGGACGAAGACGAGCTTGTGGAGTACGTTGTCAAGAATGCTGCACGGGATGAGGTAGGCCACTTCTCTGCCGACGAGATACGCTTTGTCGTGCAAGGCGAACTCGAATACTGCGAGAGTATCAATCTCTTCGAAGAGGAC","3.60","-25.79","12744","MAEEIQMYDDAASVAFIRNFIPQELKEKMTDDDIVYIVDLIYDFYESRGFMDMAEDSEETVEVDEDELVEYVVKNAARDEVGHFSADEIRFVVQGELEYCESINLFEED","1022364 1022038","TIGR ID: PG0961","hypothetical protein","Cytoplasm","No hits in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Jan 12 17:26:50 2001","Fri Jan 12 17:26:50 2001","Fri Jan 12 17:26:50 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540713","","","","","","1","","","PG0961" "PG0861","1023900","1022422","1479","ATGGCAAAAGAACTTAAAGAGCTGACACCACGGAGCGAAAGCTATTCGCAGTGGTATCAAGACTTGGTTATCAAAGCCGATCTGGCAGAAAATTCGGCTGTACGCGGCTGTATGGTTATCAAGCCTTATGGCTATGCTATATGGGAGAAAATGCAAAGACAGTTGGACGATATGTTCAAGGAGACCGGACACGTCAATGCCTATTTCCCTCTTTTTATCCCGAAGAGCTTCCTGAGCCGTGAAGCAGAACATGTGGAAGGCTTTGCTAAGGAATGCGCCGTGGTAACTCACTATCGGCTCAAAGCCAATCCCGATGGAGACGGCGTAGTAGTGGATCCGCAAGCCAAGTTGGAAGAAGAGCTGATCGTACGTCCGACATCGGAGACCATCATTTGGAATACATATAAGAACTGGATACAAAGCCACCGTGATCTGCCTATCCTCTGCAATCAGTGGGCCAATGTAGTTCGATGGGAAATGCGTACACGTCTTTTCCTCCGGACAGCCGAATTCCTTTGGCAAGAAGGGCATACGGCTCATGCTACAAAAGAGGAAGCCGAAGAAGAAGCCAGACGGATGCTGGAGGTTTATGCCACTTTTGCCGAAGAATACATGGCTATGCCTGTAGTCAAGGGTGTCAAGTCCGCCAACGAACGCTTTGCCGGTGCCGTGGACACCTATACGATAGAGGCGTTGATGCAGGATGGCAAGGCATTGCAGAGCGGTACTTCACACTTCCTCGGACAGAACTTCGCCAAGGCTTTCAATGTGACTTTTGCCGATAAGGATGGCAATCGTGATTTCGTTTGGGCTACATCATGGGGCGTATCTACCCGTCTGATGGGTGCCCTTATCATGTCCCATTCGGACGACAACGGTTTGGTACTTCCTCCGAAATTGGCACCTTATCAAGTGGTTATCATACCGATATACCGCAATGAGGAGCAGTTGGCACAGATCGATGAAAAGGCCACTCAGATTACTCAGGCTCTGCGAGCCAAAGGCATATCGGTGAAATACGACAACAGCGACAATAAGAAGCCGGGGTGGAAGTTTGCCGAATATGAGCTGAAAGGCATACCCGTTCGTTTGGCTATGGGGGCACGCGACTTGGAAAACAATACGATCGAAATAGCCCGTCGTGATACCCTGACGAAGGAGACAGTCGGATTGGATGGTATAGAAGAAACAGTCGCTACCCTACTCGATGATATTCAAAAAAATATCTTCCAAAAGGCTCTGAACTATCGCAAAGAACATACAATCACGGTGGACAGCTATGAAGAGTTCAAAGAAAAGATCGAAGATGGCGGATTTATCCTTGCTCACTGGGATGGAACCTCCGAAACGGAAGAACGAATCAAGGCCGAAACGAAAGCCACTATTCGCTGTATCCCGCTGAATGGGGACATGACTCCGGGCAAATGTATGGTGACGGGCAAGCCCTCGCCCCAACGTGTACTCTTCGCCCGTGCCTAT","5.70","-8.77","56149","MAKELKELTPRSESYSQWYQDLVIKADLAENSAVRGCMVIKPYGYAIWEKMQRQLDDMFKETGHVNAYFPLFIPKSFLSREAEHVEGFAKECAVVTHYRLKANPDGDGVVVDPQAKLEEELIVRPTSETIIWNTYKNWIQSHRDLPILCNQWANVVRWEMRTRLFLRTAEFLWQEGHTAHATKEEAEEEARRMLEVYATFAEEYMAMPVVKGVKSANERFAGAVDTYTIEALMQDGKALQSGTSHFLGQNFAKAFNVTFADKDGNRDFVWATSWGVSTRLMGALIMSHSDDNGLVLPPKLAPYQVVIIPIYRNEEQLAQIDEKATQITQALRAKGISVKYDNSDNKKPGWKFAEYELKGIPVRLAMGARDLENNTIEIARRDTLTKETVGLDGIEETVATLLDDIQKNIFQKALNYRKEHTITVDSYEEFKEKIEDGGFILAHWDGTSETEERIKAETKATIRCIPLNGDMTPGKCMVTGKPSPQRVLFARAY","1023900 1022422","From Prosite PDOC00363: Aminoacyl-tRNA synthetases (EC 6.1.1.-) are a group of enzymes which activate amino acids and transfer them to specific tRNA molecules as the first step in protein biosynthesis. In prokaryotic organisms there are at least twenty different types of aminoacyl-tRNA synthetases, one for each different amino acid. In eukaryotes there are generally two aminoacyl-tRNA synthetases for each different amino acid: one cytosolic form and a mitochondrial form. While all these enzymes have a common function, they are widely diverse in terms of subunit size and of quaternary structure. TIGR ID: PG0962","prolyl-tRNA synthetase","Cytoplasm","Numerous hits with gapped BLAST to prolys tRNA synthetase; e.g. residues 5-493 are 51% similar to prolyl tRNA synthetase (AJ130879) of Clostridium sticklandii, residues 8-493 are 48% similar to tRNA ligase (AE001145) of Borrelia burgdorferi, residues 15-456 are 32% similar to prolyl tRNA synthetase (Q58635) of Methanocooccus jannaschii.","
InterPro
IPR002314
Domain
tRNA synthetase, class II (G, H, P and S)
PF00587\"[47-235]TtRNA-synt_2b
InterPro
IPR004154
Domain
Anticodon-binding
G3DSA:3.40.50.800\"[298-403]TAnticodon_bd
PF03129\"[304-401]THGTP_anticodon
SSF52954\"[292-420]TAnticodon_bd
InterPro
IPR004499
Family
Prolyl-tRNA synthetase, archaeal and eukaryotic type
PTHR11451:SF6\"[3-97]T\"[119-493]TProS_fam_I
TIGR00408\"[8-493]TproS_fam_I
InterPro
IPR006195
Domain
Aminoacyl-transfer RNA synthetase, class II
PS50862\"[30-297]TAA_TRNA_LIGASE_II
InterPro
IPR015263
Domain
Prolyl-tRNA synthetase, C-terminal
PF09180\"[427-493]TProRS-C_1
noIPR
unintegrated
unintegrated
G3DSA:3.30.110.30\"[421-493]TG3DSA:3.30.110.30
G3DSA:3.30.930.10\"[2-297]TG3DSA:3.30.930.10
PTHR11451\"[3-97]T\"[119-493]TPTHR11451
SSF55681\"[6-291]TSSF55681
SSF64586\"[421-493]TSSF64586


","BeTs to 17 clades of COG0442COG name: Prolyl-tRNA synthetaseFunctional Class: JThe phylogenetic pattern of COG0442 is amtkYqvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** PR01046 (Prolyl-tRNA synthetase signature) with a combined E-value of 3.1e-14. PR01046A 66-84 PR01046B 121-132 PR01046C 151-159 PR01046D 160-171","Residues 273-406 are 41% similar to a (SYNTHETASE AMINOACYL-TRNA LIGASE PROTEIN BIOSYNTHESIS) protein domain (PD000606) which is seen in YHI0_YEAST.Residues 403-493 are 43% similar to a (PROLYL-TRNA SYNTHETASE PROS) protein domain (PD118391) which is seen in O51363_BORBU.Residues 406-493 are 40% similar to a (PUTATIVE PROLYL TRNA SYNTHETASE) protein domain (PD210988) which is seen in Q9Z5I7_MYCLE.Residues 15-270 are 56% similar to a (SYNTHETASE AMINOACYL-TRNA LIGASE PROTEIN BIOSYNTHESIS) protein domain (PD000380) which is seen in O51363_BORBU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Tue Apr 18 10:08:10 MDT 2000","Wed Mar 22 11:13:35 MST 2000","Tue Apr 18 10:08:10 MDT 2000","Wed Feb 21 15:30:14 MST 2001","Wed Feb 21 15:30:14 MST 2001","Wed Feb 21 15:30:14 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG0861 is similar to PG0888 and PG 1892;residues 57-420 are 20% similar to PG0888, residues 268-399 are 27% similar to PG1892.","Tue Apr 18 10:08:10 MDT 2000","Wed Feb 21 15:30:14 MST 2001","-68% similar to PDB:1H4Q PROLYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH TRNAPRO(CGG), ATP AND PROLINOL (E_value = 1.0E_137);-68% similar to PDB:1H4S PROLYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH TRNAPRO(CGG) AND A PROLYL-ADENYLATE ANALOGUE (E_value = 1.0E_137);-68% similar to PDB:1H4T PROLYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH L-PROLINE (E_value = 1.0E_137);-68% similar to PDB:1HC7 PROLYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS (E_value = 1.0E_137);-52% similar to PDB:1NJ1 Crystal structure of Prolyl-tRNA Synthetase from Methanothermobacter thermautotrophicus bound to cysteine sulfamoyl adenylate (E_value = 8.2E_63);","","","Residues 36 to 208 (E-value = 9.8e-25) place PG0861 in the tRNA-synt_2b family which is described as tRNA synthetase class II core domain (G, H, P, S and T) (PF00587)Residues 304 to 401 (E-value = 1.5e-23) place PG0861 in the HGTP_anticodon family which is described as Anticodon binding domain (PF03129)","Wed Feb 21 15:30:14 MST 2001","34540714","","","","","","1","","","PG0962" "PG0862","1023993","1024289","297","GTGCGGATTGCCAAATGGAAGTGGGCAAATCTTTTTATTTTCTGTAGGCAGGTATTTACTCGATGGATTGGGCCGGATGAAGTCTGCCCTCTTTATTTTTTGTCGGATCCGGTATCAAGCGGACAGGGTGATATCGGAGCAAAGGATCCGAGTCTGCTGAATATATGGATCCATCCGGTTCCTGCATCAGCTCTTGTCCTTTATGTCTTCGAAGTCTACGTATTCTCCTTGGTCTTTGTCAAATTTTCGCTTTTCAAGTTCGTCGAGTTCGACTTTTTCACCCGGAGAAGGGTTTTT","9.40","3.13","11629","VRIAKWKWANLFIFCRQVFTRWIGPDEVCPLYFLSDPVSSGQGDIGAKDPSLLNIWIHPVPASALVLYVFEVYVFSLVFVKFSLFKFVEFDFFTRRRVF","1023993 1024289 [Bad Olap 1117 108 0]","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No hits in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-20]?signal-peptide
tmhmm\"[60-80]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Jan 12 17:28:17 2001","Fri Jan 12 17:28:17 2001","Fri Jan 12 17:28:17 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","-52% similar to PDB:1BY3 FHUA FROM E. COLI (E_value = );-52% similar to PDB:1BY5 FHUA FROM E. COLI, WITH ITS LIGAND FERRICHROME (E_value = );-52% similar to PDB:1CHC STRUCTURE OF THE C3HC4 DOMAIN BY 1H-NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; A NEW STRUCTURAL CLASS OF ZINC-FINGER (E_value = );","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG0863","1024424","1024182","243","ATGGAACTAATAGGCACTTTTTTTCTTATCCTGCTAATCTATTGGGTAATCCGATTTCTGATTCGGATGTTCGCCATTCGTCAGATGTTTTTCGAACAGAAGAAGAACTCTTCACGACAAGGAACAGAAACCTCAAAAAACCCTTCTCCGGGTGAAAAAGTCGAACTCGACGAACTTGAAAAGCGAAAATTTGACAAAGACCAAGGAGAATACGTAGACTTCGAAGACATAAAGGACAAGAGC","5.30","-1.01","9726","MELIGTFFLILLIYWVIRFLIRMFAIRQMFFEQKKNSSRQGTETSKNPSPGEKVELDELEKRKFDKDQGEYVDFEDIKDKS","1024424 1024182 [Shorter 1116 108 99]","TIGR ID: PG0963","hypothetical protein","Cytoplasm","No significant hits in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-25]?signal-peptide
tmhmm\"[4-26]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Jan 12 17:29:49 2001","Fri Jan 12 17:29:49 2001","Fri Jan 12 17:29:49 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","-57% similar to PDB:1DIK PYRUVATE PHOSPHATE DIKINASE (E_value = );-57% similar to PDB:1GGO T453A MUTANT OF PYRUVATE, PHOSPHATE DIKINASE (E_value = );-57% similar to PDB:1JDE K22A mutant of pyruvate, phosphate dikinase (E_value = );-69% similar to PDB:1JK0 Ribonucleotide reductase Y2Y4 heterodimer (E_value = );-57% similar to PDB:1KBL PYRUVATE PHOSPHATE DIKINASE (E_value = );","","","No significant hits to the Pfam 11.0 database","","34540715","","","","","","1","","","PG0963" "PG0864","1025201","1024494","708","ATGAATATCCATCGACATATTCCCAATACCATCACATGCCTCAATCTGCTTGCAGGTTGTGCAGCTATAATCGCAGCCATTGAGTACCACGATCTTGCTGTGGCTGCGGGATTTATTATTTTGGCTGCCGTATTCGACTTCTTCGATGGAATGGCTGCAAGGATTCTGAATGCGAAGTCATCTATCGGAGCCGATTTGGATTCATTGGCTGATGTGGTCAGTTTCGGCGTGGCTCCTACCATGTGTTTATATACAGCTTTGGCTGCTGTAGTGGAGCCTTCGTATCGCTTTGCCACTTATGGAGTGTTTCTTTTGGCTGCATTTGCCGCTTTGCGTTTGGCCAAATTCAACAACGACACACGTCAGACTACCTCCTTTATCGGCCTACCGGTTCCGGCCAATGCCCTCTTTTGGATCGCATACATAGACCTTTTTTCTTTGGATAGCAGTCCGGTAATGGCCGGATTGCCCTTGTTGGTGCTCACTCTTGTGCTCGTTTTTCTCTTCTCCTATTTGATGATCAGCGAACTCCCTATGCTCGCCCTGAAGATTCGGTCGCTGTCGTGGCGAGGCAATGAATGGCGATATATACTGGTCATCGCTTCGGCTCTGTTCGTAGCAGTCTGGGGAATAGGCGGATTTTCGCCGGCTATCGTACTGTATCTGCTGATGGCTATCGTAGCCAAGCGTACAGGCTGCGAGCAGAAG","7.30","0.52","25548","MNIHRHIPNTITCLNLLAGCAAIIAAIEYHDLAVAAGFIILAAVFDFFDGMAARILNAKSSIGADLDSLADVVSFGVAPTMCLYTALAAVVEPSYRFATYGVFLLAAFAALRLAKFNNDTRQTTSFIGLPVPANALFWIAYIDLFSLDSSPVMAGLPLLVLTLVLVFLFSYLMISELPMLALKIRSLSWRGNEWRYILVIASALFVAVWGIGGFSPAIVLYLLMAIVAKRTGCEQK","1025201 1024494","TIGR ID: PG0964","CDP-diacylglycerol-serine-O-phosphatidyltransferase","Inner membrane, Cytoplasm","Numerous hits with gapped BLAST to CDP-diacylglycerol--serine O-phosphatidyltransferases from, i.e., Bacillus subtilis (gi: 730414), Mycobacterium leprae (gi: 4154045), Mycobacterium tuberculosis (gi: 6225884), among others.This protein is similar to CT826, a predicted CDP-diacylglycerol-serine O-phosphatidyltransferase from Chlamydia trachomatis.","
InterPro
IPR000462
Family
CDP-alcohol phosphatidyltransferase
PF01066\"[36-180]TCDP-OH_P_transf
PS00379\"[49-71]TCDP_ALCOHOL_P_TRANSF
noIPR
unintegrated
unintegrated
PIRSF000851\"[4-235]TCDP-diacylglycerol--serine O-phosphatidyltransferase
PS51257\"[1-20]TPROKAR_LIPOPROTEIN
signalp\"[1-26]?signal-peptide
tmhmm\"[7-27]?\"[33-53]?\"[68-88]?\"[98-116]?\"[125-145]?\"[155-175]?\"[196-218]?transmembrane_regions


","BeTs to 9 clades of COG1183COG name: Phosphatidylserine synthaseFunctional Class: IThe phylogenetic pattern of COG1183 is amt-y----br-uj---linxNumber of proteins in this genome belonging to this COG is 1","***** IPB000462 (CDP-alcohol phosphatidyltransferase) with a combined E-value of 4.8e-10. IPB000462 46-71","Residues 38-85 are 60% similar to a (TRANSFERASE SYNTHASE PROTEIN 3-PHOSPHATIDYLTRANSFERASE) protein domain (PD001399) which is seen in PSS_BACSU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Fri Apr 7 13:14:27 MDT 2000","Fri Apr 7 13:14:27 MDT 2000","Fri Apr 7 13:14:27 MDT 2000","Wed Dec 20 16:02:46 MST 2000","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Wed Dec 20 16:25:21 MST 2000","","No significant hits to the PDB database (E-value < E-10).","","","Residues 36 to 174 (E-value = 4.7e-13) place PG0864 in the CDP-OH_P_transf family which is described as CDP-alcohol phosphatidyltransferase (PF01066)","Fri Apr 7 13:14:27 MDT 2000","","","","Okada,M., Matsuzaki,H., Shibuya,I. and Matsumoto,K. 1994. Cloning, sequencing, and expression in Escherichia coli of the Bacillus subtilis gene for phosphatidylserine synthase. J. Bacteriol. 176 (24): 7456-7461. PubMed: 8002567.","","Fri Apr 7 13:14:27 MDT 2000","1","","","PG0964" "PG0865","1025868","1025206","663","ATGAAGGTTCATAAAGAGAGCACCGGACTTTTAGTATCCATGGCAACCCTCTTCACGGGGATATGCTTAAGCCTGTTTTATTTTCTCGGGGCTTCTATTGTATCCTATTTGGTAATGATCATTGCCATTTTCCTCTATCTGCTTACGATCAACTTTTTTCGTTGTCCTAAGAGACACAGCCCCTTTGCCAATGACGACCGTGCCGTTGTAGCACCTGCCGATGGCAAGATCGTAGCCATCGAAGAAGTATCCGAAAATGAAATACTCCATGAACGCTGTATTCAGGTGTCGATTTTTATGTCGATTTTCAATGTTCATGCCAATTGGTTTCCCTGCGAAGGCAAGGTTACGCACGTATCTCACAAGAACGGTCATTTTATCGCAGCCTACCTCCCTAAGAGTAGTACCGACAACGAGCGTTCGGCTATCGTTATCAAAACCGAAAAAGGTGCTCGTATACTGGCGCGCCAGATTGCAGGGGCTTTGGCTCGCCGTATCGTTACCTATGCAGAGGTGGGGGATATATGCTCCGTAGATGCCCATATGGGTTTTATCAAGTTTGGCTCACGAGTAGATGTTTACTTGCCCCTCGGCTCTCAGGTAGAGGTTAAGATGGATCAGAAGACTGTCGGCAATCAAACGCTAATAGCCCGACTGCCCGAG","8.40","4.68","24504","MKVHKESTGLLVSMATLFTGICLSLFYFLGASIVSYLVMIIAIFLYLLTINFFRCPKRHSPFANDDRAVVAPADGKIVAIEEVSENEILHERCIQVSIFMSIFNVHANWFPCEGKVTHVSHKNGHFIAAYLPKSSTDNERSAIVIKTEKGARILARQIAGALARRIVTYAEVGDICSVDAHMGFIKFGSRVDVYLPLGSQVEVKMDQKTVGNQTLIARLPE","1025910 1025206","TIGR ID: PG0965","phosphatidylserine decarboxylase","Inner membrane, Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 20-220 are 38% similar to gbAAA84884.1 unknown of Neisseria gonorrhoeae, residues 20-220 are 38% similar to gbAAF41369.1 phosphatidylserine decarboxylase precursor-related protein of Neisseria meningitidis MC58, residues 20-220 are 38% similar to embCAB84422.1 putative membrane protein of Neisseria meningitidis Z2491.","
InterPro
IPR003817
Family
Phosphatidylserine decarboxylase-related
PF02666\"[40-217]TPS_Dcarbxylase
InterPro
IPR004428
Family
Phosphatidylserine decarboxylase-related protein
TIGR00164\"[12-221]TPS_decarb_rel


","BeTs to 6 clades of COG0688COG name: Phosphatidylserine decarboxylaseFunctional Class: IThe phylogenetic pattern of COG0688 is amt-Y---ebrhuj----inxNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 20-218 are 37% similar to a (PROTEIN PHOSPHATIDYLSERINE DECARBOXYLASE) protein domain (PD016896) which is seen in Q50967_NEIGO.","","Wed Jun 13 17:43:33 MDT 2001","","Wed Jun 13 17:43:33 MDT 2001","Wed Jun 13 17:43:33 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Jun 13 17:43:33 MDT 2001","Wed Jun 13 17:43:33 MDT 2001","","","Mon Jul 28 18:34:17 2008","Mon Jul 28 18:34:17 2008","Fri Jan 12 17:33:37 2001","","Mon Jun 18 13:17:59 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Jul 28 18:34:17 2008","No significant hits to the PDB database (E-value < E-10).","","","Residues 45 to 217 (E-value = 1.1e-21) place PG0865 in the PS_Dcarbxylase family which is described as Phosphatidylserine decarboxylase (PF02666)","Mon Jun 18 13:17:59 MDT 2001","34540716","","","","","","1","","","PG0965" "PG0866","1026970","1027884","915","ATGATACCAGATTTCCAAACCCTGATGCTTCCATTGCTGAAATGTGTTTCAGATGGACAAGAGCACAAATACAGAGATATTATCGAACATTTGGCAGCCGAATTTGAGGTCACGGACGAAGAACGCAAGGAACTCTTGGCAAGTGGCTCCAAAGCTGTTTTTGACAATCGCGTTGGCTGGGCAAGAACATACCTAAAGAAGGCTGGCCTTCTTGATTCGCCTAAACGAGCGATTCTTATAATTTCTGACCTTGGCAGAGAGATACTTTCGAAGAATCCCCCAAAAATAGACACAAAATACCTAAGACGGTTTCCGGCGTTTATAGAATTTCAGAACGGTTATCGAAATGACGGCGAAACAGAAGAAGAATCCATAACAGAAAAAATACACGAACAAACACCTGAAGAGGTCCTTGACAAAGCATATCAAAGAATCAGAAAATCATTGGCTTCCGAATTACTTAATAAAGTCATTGACCTTTCACCTGCTTTTTTTGAGAGGCTTGTTGTCGAATTATTAGTCAAAATGGGATATGGAGGTTCTATCAAGGATGCCGGTAAAGCATTAGGCAAAAGTGGAGACGAGGGAATTGACGGAACAATAAAAGAAGATAAACTGGGACTTGATATTATTTATATCCAAGCCAAGCGCTGGAGGCCTGGGAATGTGGTAGGAAGACCTGAGCTTCAAAAGTTTGTTGGAGCACTCGCTGGACAAGGTGCCAAAAAAGGGATCTTTATAACAACTTCAAATTTTACAAAGGAAGCATTAACTTATACACCCAGGAATGAGACTAAAATTGTATTGATTGATGGGGAACAACTAACTCAATTAATGATCGATTACAACCTTGGATGCACTACACAACAGACTTATGAGTTGAAAAAGCTCGATAGTGACTATTTTGGAGAAGAA","5.50","-4.34","34444","MIPDFQTLMLPLLKCVSDGQEHKYRDIIEHLAAEFEVTDEERKELLASGSKAVFDNRVGWARTYLKKAGLLDSPKRAILIISDLGREILSKNPPKIDTKYLRRFPAFIEFQNGYRNDGETEEESITEKIHEQTPEEVLDKAYQRIRKSLASELLNKVIDLSPAFFERLVVELLVKMGYGGSIKDAGKALGKSGDEGIDGTIKEDKLGLDIIYIQAKRWRPGNVVGRPELQKFVGALAGQGAKKGIFITTSNFTKEALTYTPRNETKIVLIDGEQLTQLMIDYNLGCTTQQTYELKKLDSDYFGEE","1026970 1027884","TIGR ID: PG0968","mrr restriction system related protein","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 2-304 are 45% similar to gb|AAF10167.1|AE001917_4 mrr restriction system protein of Deinococcus radiodurans, residues 2-302 are 39% similar to emb|CAB06180.1| mrr of Mycobacterium tuberculosis, residues 2-302 are 37% similar to gb|AAF10088.1|AE001910_1 mrr restriction system protein of Deinococcus radiodurans.","
InterPro
IPR007560
Family
Restriction endonuclease
PF04471\"[169-277]TMrr_cat


","BeTs to 3 clades of COG1715COG name: Mrr restriction endonucleaseFunctional Class: LThe phylogenetic pattern of COG1715 is --t-----e-r----------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 2-302 are 39% similar to a (PROTEIN MRR RESTRICTION SYSTEM RELATED) protein domain (PD024389) which is seen in P95025_MYCTU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Jan 12 17:41:02 2001","Fri Jan 12 17:41:02 2001","Fri Jan 12 17:41:02 2001","","Fri May 4 13:20:45 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri May 4 13:20:45 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 169 to 277 (E-value = 4.7e-41) place PG0866 in the Mrr_cat family which is described as Restriction endonuclease (PF04471)","Fri May 4 13:20:45 MDT 2001","34540717","","","","","","1","","","PG0968" "PG0867","1029510","1028296","1215","ATGATTACGACCACGGATATTTCCATTGCCGACTACGACTATCCATTGCCCGAAGAACGAATTGCCAAACATGCTTTGCCACAGCGCGATGCCTGTAAATTGCTCGTTTATGACAAGGGTGAGATAAAGGATGCCGTATTTTCCCAATTATCGGAAGTACTGCCATCGGGCAGTATGCTGGTCAGGAATAATACCCGTGTCATTCGTGCCCGTTTGCTTTTTCGCAAGTCCACGGGAGCGACCATCGAAGTATTCTGTCTCGAACCTGTCAGCCCTGCACAGTACGAACTCTCGCTAACAGCTCGTGGCTCCTGTACCTGGCACTGTATGGTAGGCAATGCCAAAAGATGGCGGTCGGACGACTTGCAGATGGAGATTCCTTCTCCGCAAGGAGGTAGCATCTTATTGACAGCTTCTCACGATCCTGCGGCAGATGGATGCATCCGTCTCAGCTGGGAAAATGATCATTACACCTTTGGCGAAATCCTTGAAATGGCCGGCATCCTCCCTATTCCCCCCTATCTCAATCGGGATACCGAAGAGGAAGACTTGGAAACCTACCAAACCGTCTATGCCAAAAATCTGGGTTCGGTGGCAGCACCTACGGCCGGGTTGCATTTCACGGAGGAGGAGTTCGAACGGCTGAGAGCACAGGGTACTCCGGTTGTCGATGTTACCCTGCATGTCGGAGCCGGCACTTTCCGTCCCGTCAAAAGCGAGACTATCGGTGAACACCGGATGCACCGTGAACTGATAGTCATTGAGCGCTCATCGCTGGAAGCCCTGCGTGATTGGCAAGGCAGCATCGTTGCCGTTGGGACGACCTCCGTACGGACGCTCGAAAGTCTCTATTGGCTGGGGAGAAGCCTCTCCTCCGCTTCGCATACATCGCAAGAATCCTTAAAAGTCAATCAGTGGGAAGCCTATGAGAATGAAGATGTGGCCCTGTCTCGTAGTGAGACCATCCGCATAATACTCGATTGGATGGACGAGCAAGGAGTCGAAACGCTGATTTTTCCGACCGAGATTCTGATTGCTCCGGGCTATCGCTATCGGATGGTCGATGCCATGATTACCAATTTTCATCAACCGCGCAGTACCCTCTTGCTGCTTGTCTCGGCTTTTATCGGAGAGAATTGGAAGGCTGTTTACCACCATGCCCTCGAATCGGGCTATCGCTTCCTGAGCTATGGCGATGGTTCATTGCTGATCCCC","5.00","-15.31","45498","MITTTDISIADYDYPLPEERIAKHALPQRDACKLLVYDKGEIKDAVFSQLSEVLPSGSMLVRNNTRVIRARLLFRKSTGATIEVFCLEPVSPAQYELSLTARGSCTWHCMVGNAKRWRSDDLQMEIPSPQGGSILLTASHDPAADGCIRLSWENDHYTFGEILEMAGILPIPPYLNRDTEEEDLETYQTVYAKNLGSVAAPTAGLHFTEEEFERLRAQGTPVVDVTLHVGAGTFRPVKSETIGEHRMHRELIVIERSSLEALRDWQGSIVAVGTTSVRTLESLYWLGRSLSSASHTSQESLKVNQWEAYENEDVALSRSETIRIILDWMDEQGVETLIFPTEILIAPGYRYRMVDAMITNFHQPRSTLLLLVSAFIGENWKAVYHHALESGYRFLSYGDGSLLIP","1029510 1028296","TIGR ID: PG0969"," S-adenosylmethionine/tRNA ribosyltransferase-isomerase","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 7-403 are 35% similar to gb|AAF93904.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase of Vibrio cholerae, residues 9-403 are 34% similar to gb|AAC73508.1| synthesis of queuine in tRNA; probably S-adenosylmethionine:tRNA ribosyltransferase-isomerase of Escherichia coli K12, residues 12-404 are 36% similar to emb|CAB14732.1| S-adenosylmethionine tRNA ribosyltransferase of Bacillus subtilis.This sequence is similar to BT3973.","
InterPro
IPR003699
Family
Queuosine biosynthesis protein
PF02547\"[7-239]TQueuosine_synth
noIPR
unintegrated
unintegrated
SSF111337\"[10-404]TSSF111337


","BeTs to 8 clades of COG0809COG name: S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase)Functional Class: JThe phylogenetic pattern of COG0809 is -----qvceb-huj--o---xNumber of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","Residues 9-238 are 37% similar to a (RIBOSYLTRANSFERASE-ISOMERASE S-ADENOSYLMETHIONINE:TRNA) protein domain (PD009740) which is seen in QUEA_ECOLI.Residues 240-404 are 33% similar to a (RIBOSYLTRANSFERASE-ISOMERASE S-ADENOSYLMETHIONINE:TRNA) protein domain (PD011331) which is seen in QUEA_BACSU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Apr 20 13:52:26 MDT 2001","Sat Jan 3 10:34:36 2004","Fri Jan 12 17:45:28 2001","","Thu Feb 22 19:20:23 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 7-404 are 29% similar to PG1347.","Fri Jan 12 17:45:28 2001","Thu Feb 22 19:20:23 MST 2001","-51% similar to PDB:1YY3 Structure of S-Adenosylmethionine:tRNA Ribosyltransferase-Isomerase (QueA) (E_value = 1.2E_56);-51% similar to PDB:1VKY Crystal structure of S-adenosylmethionine tRNA ribosyltransferase (TM0574) from Thermotoga maritima at 2.00 A resolution (E_value = 1.2E_53);-47% similar to PDB:1WDI Crystal Structure Of TT0907 From Thermus Thermophilus HB8 (E_value = 8.2E_50);","","","Residues 7 to 239 (E-value = 5e-50) place PG0867 in the Queuosine_synth family which is described as Queuosine biosynthesis protein (PF02547)","Fri Apr 20 13:52:26 MDT 2001","34540718","","","","","","1","","8","PG0969" "PG0868","1029748","1030902","1155","ATGAGTACAAATATAAGCCTATTCGCCCAAGTTATCCGCCTGTTGCCTCGTCCATTGATTAAGAAGCTCTCTACAGAGTTTCAGGTAGACAAGCACAGCAAGCATTTCACCTCATGGCAGCACTTAGTGAGCATGATTTTCAGCCAATTCTCAAGCTGTATCTCCTTACGCGAGATTAGTAATGGCTTACGCTCAGCCACAGGTAACCTCAACCACTTAGGCATATGCACAGCACCCTCTAAGTCCAATTTATCTTATCAGAACGAGCACCGTACCTCAGACTTCTTTCGAGCGTGCTATTATGCCTTGCTAGATTATTTCGGACAGCAGGGTATGGGGCAAGGGCGTAAGTTTCGTTTTAAGCAACCCGTCAAGCTTCTAGACTCTACGACCATTACCCTTTGCCTTGCCCTATACGATTGGGCTAAATACACACATACGAAGGGAGCTGTTAAGCTTCATACACTCTTAGACTTCAAGACTCTGTTGCCTGAATATGTGCATATTAGTGATGGTAAAGGACATGATGGCAAGATGGCCAATTCTATTCCTATCCCAGCAGGAAGTATCGTCGTGGCTGACCGTGGCTATGCTGATACCGCCTTGCTCAATAGTTGGGACAGCACCCAAGTGAGTTTTGTAGTACGCCACCCAAGGTCCTTAAAATATGAGGTTATTCAAGAGTTGGAACTCCCAGAACATGGGCATCAGCAAATACTCGTAGATCAGAGAGTACGGCTCACAGGCGTTCAGACGCAAGGCAAGTACACTAAGCCATTGAGGCATATTGCCCTCTACAACGAGCAACATGGCGATGTCGTTGAGTTATTGACCAACATAGACACCCTTGCAGCAAGTAGTATAGCCTTGCTGTATCGTTCAAGATGGCTTATCGAGATTTTCTTTCGGAATTTGAAGCAACGCCTCAGCATGAAGGCCTTTCTTGGAACAACGCGCAATGCCGTAGAGGTGCAAATATGGACCGCTCTTATTACAATGCTTTTGATGGTCTATCTCAAGAGTATCGCCAAATATCGGTGGTGCTTGTCTAATCTTGTCTCTTCGCTAAGAATCAACACATTTACCAAGATGGATCTGATGCAATGGCTTAATGAGCCGTTTACGCCTCCGCCAGAGCCCGAAAATCAGCTCTTT","10.20","16.13","44087","MSTNISLFAQVIRLLPRPLIKKLSTEFQVDKHSKHFTSWQHLVSMIFSQFSSCISLREISNGLRSATGNLNHLGICTAPSKSNLSYQNEHRTSDFFRACYYALLDYFGQQGMGQGRKFRFKQPVKLLDSTTITLCLALYDWAKYTHTKGAVKLHTLLDFKTLLPEYVHISDGKGHDGKMANSIPIPAGSIVVADRGYADTALLNSWDSTQVSFVVRHPRSLKYEVIQELELPEHGHQQILVDQRVRLTGVQTQGKYTKPLRHIALYNEQHGDVVELLTNIDTLAASSIALLYRSRWLIEIFFRNLKQRLSMKAFLGTTRNAVEVQIWTALITMLLMVYLKSIAKYRWCLSNLVSSLRINTFTKMDLMQWLNEPFTPPPEPENQLF","1029721 1030902","Member of the IS5 family of IS elements.TIGR ID: PG0970","ISPg4 transposase","Inner membrane, Cytoplasm","PG0868 is equivalent to the previously sequenced AF148127 in GenBANK. See also AB009361, AB003149. Residues 20-337 are 27% similar to a transposase from B.subtilis (AB031551).","
InterPro
IPR002559
Domain
Transposase, IS4-like
PF01609\"[124-335]TTransposase_11
InterPro
IPR012337
Domain
Polynucleotidyl transferase, Ribonuclease H fold
SSF53098\"[185-350]TRNaseH_fold


","No hit to the COGs database.","***** PF01609 (Transposase (IS4 family)) with a combined E-value of 1.4e-08. PF01609B 288-309","Residues 271-336 are 45% similar to a (TRANSPOSASE PUTATIVE PLASMID ELEMENT) protein domain (PD003301) which is seen in Y4ZB_RHISN.","","Wed Jun 13 17:40:20 MDT 2001","","Wed Jun 13 17:40:20 MDT 2001","Wed Jun 13 17:40:20 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Jun 13 17:40:20 MDT 2001","Wed Jun 13 17:40:20 MDT 2001","","Mon Jun 18 13:23:26 MDT 2001","Fri Feb 9 09:03:01 MST 2001","Mon Jun 18 13:25:54 MDT 2001","Mon Dec 4 11:46:04 MST 2000","Mon Jun 18 13:23:26 MDT 2001","Mon Jun 18 13:23:26 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG0868 is paralogously related to PG1461, PG1114, PG1920, PG0043, PG1447, PG0162, PG0445, PG0205, and PG0016, all predicted ISPg4-related transposases.","Fri Feb 9 09:03:01 MST 2001","Wed Jun 13 17:40:20 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 124 to 335 (E-value = 6.9e-43) place PG0868 in the Transposase_11 family which is described as Transposase DDE domain (PF01609)","Mon Jun 18 13:23:26 MDT 2001","34540719","","Sawada,K., Kokeguchi,S., Hongyo,H., Sawada,S., Miyamoto,M.,Maeda,H., Nishimura,F., Takashiba,S. and Murayama,Y.Identification by subtractive hybridization of a novel insertionsequence specific for virulent strains of porphyromonas gingivalis. Infect. Immun. 67 (11), 5621-5625 (1999)","Nagai,T., Phan Tran,L.S., Inatsu,Y. and Itoh,Y.A new IS4 family insertion sequence, IS4Bsu1, responsible forgenetic instability of poly-gamma-glutamic acid production inbacillus subtilis. J. Bacteriol. 182 (9), 2387-2392 (2000)","Fri Feb 9 09:03:01 MST 2001","Fri Feb 9 09:03:01 MST 2001","1","","8","PG0970" "PG0869","1031088","1032800","1713","ATGAATAATCATTCAAACAAACATTGGCATCTTCAAATGTACCTTCCTGAAGGGAAAAAGGGAGTGCAAATTCGATCAGAAGATATGCTTAAAGAGCCACAGCCTGTTATTGGTACAGGGGAATGGAATAATAGACAATGCCAAGATTTCAAGGAGTTGCATATTGGAACTATTATTTTAGTTCGAGAAGGTAAAAAAGCTATAGCGTTATGTGAAGTCACTAGTGGCTGCTATACTGATAAAGAACTACACGAGAAATACCGACACTCCAATTTTAGAAATGTGAAAGTACTTGATTTTATTGCAGAAAAGGATCAACCTCCCCCTAGATTGTTTTCTCAGGGAACATTAAAATCATGTGGAGAATGGACTCATCAATGGGAATATATTGATAAATTAATATCGCTTATGGATAAGAATAACCCTATAGAAGAATATAGCCAACTCAAAGAATACGCGCAACTTTTAGAGTCAAAAAAGAACATCATTTTGCAAGGTGCACCAGGGACTGGCAAGACCTATACAACAGCTTCTATCGCTGTGCATATGTGCAACAAGAACTTTACAGATTATACCGACCACAGCAAAGTCATAGAAGAGTACGAACGCCTGAGAGATACTGGTCAAATAGCATTCTGTACCTTCCACCAGTCAATGGATTATGAGGATTTTGTGGAAGGATTGAAGCCAGAAGTGAAAAGTAACAATGTGGAATACAATGTGGAAAATGGAATCTTCAAATCCATCTGTGAACAGGCAAAGACAAAGGAAGAAGCAGATATCATTACTTGTATTGACAAGTATCTGCAGTCTATCAAGGGTTATGAAAACAAGAAGAAAATTCCAACGATTTCCGGTAGGTCAGATCTGTGGGTATGGTGGATAGAGGGTAATGACACAATAAGCACTCGCAGTGCCATTTCTAAAAGTGAAAAAGGGGAGCAGTATTCACTATCACCACTTAACATTGAGAAAGTCAAGCTGCAGGCAATTGGTGAAGCTATAGAGAATAACTGGCGACAGTATGCACAAGCATTTATCAATGCCGTAAAGAAAGAGTACCAACTTGACAAACAAATTTCAGACAAACCTTATGTTCTCATTATTGACGAGATAAACAGAGGTAATGTGTCCAAAATATTCGGAGAACTTATCACCTTACTTGAAGCTGATAAGCGTAGTGGTGCAGGCAGTGACAGTAATCACTGTATCAGTTTAATACTACCATACTCAAAAGAGAATTTCTCTGTCCCCTCCAATCTATATATCATTGGCACAATGAACACTACCGATCGATCTACTGGCACCATTGATTATGCTGTTCGCCGTCGCTTCGCATTTGTTACATTGAAGTCAAGTGATAAAGTTATCAAGGAGTATGCGGAAAAACAATCAGTTGAGGATAATGTCCGTGATGCATCACTTGCTTTGTTTACACAGATTAATGGAAATCTTAAAAACGATAAGGAATCATTTATTGCCAAACATAAGGCAGCTGACTTTGAACTTGAGGACTTGAAGGTAGGACATAGCTACTTCATGGCTAAGGATATTGACATGCTTAAGATGAAGATGCGTTACGAAGTAGTGCCTCTCATCAAAGAATACATTAAAGATGGTATCCTAAGAGGGATGCAAGGCGATGAATCGTATTTTGAGAAATGGATGAATGCAGAATGTTTTCACCAGTCTGAGCCTACTACAAATGATAAC","6.30","-6.03","65711","MNNHSNKHWHLQMYLPEGKKGVQIRSEDMLKEPQPVIGTGEWNNRQCQDFKELHIGTIILVREGKKAIALCEVTSGCYTDKELHEKYRHSNFRNVKVLDFIAEKDQPPPRLFSQGTLKSCGEWTHQWEYIDKLISLMDKNNPIEEYSQLKEYAQLLESKKNIILQGAPGTGKTYTTASIAVHMCNKNFTDYTDHSKVIEEYERLRDTGQIAFCTFHQSMDYEDFVEGLKPEVKSNNVEYNVENGIFKSICEQAKTKEEADIITCIDKYLQSIKGYENKKKIPTISGRSDLWVWWIEGNDTISTRSAISKSEKGEQYSLSPLNIEKVKLQAIGEAIENNWRQYAQAFINAVKKEYQLDKQISDKPYVLIIDEINRGNVSKIFGELITLLEADKRSGAGSDSNHCISLILPYSKENFSVPSNLYIIGTMNTTDRSTGTIDYAVRRRFAFVTLKSSDKVIKEYAEKQSVEDNVRDASLALFTQINGNLKNDKESFIAKHKAADFELEDLKVGHSYFMAKDIDMLKMKMRYEVVPLIKEYIKDGILRGMQGDESYFEKWMNAECFHQSEPTTNDN","1031088 1032800","All but one hit in BLAST is fragmented or small portion of sequence. Possibly and incorrectly predicted orf.TIGR ID: PG0971","hypothetical protein","Cytoplasm","Few weak hit in gapped BLAST but most are fragmented, e.g.; residues 161-536 are 33% similar to emb|CAB72623.1| putative endonuclease of Campylobacter jejuni, residues 363-553 are 37% similar to gb|AAF12568.1|AE001826_37 McrB-related protein of Deinococcus radiodurans.","
InterPro
IPR011704
Domain
ATPase associated with various cellular activities, AAA-5
PF07728\"[363-453]TAAA_5
noIPR
unintegrated
unintegrated
SSF52540\"[97-455]TSSF52540


","BeTs to 6 clades of COG1401COG name: McrB and related restriction endonucleasesFunctional Class: LThe phylogenetic pattern of COG1401 is --tk-q-ceb--uj-------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 379-539 are 30% similar to a (5-METHYLCYTOSINE-SPECIFIC RESTRICTION ENZYME B HYDROLASE) protein domain (PD152463) which is seen in P96754_ECOLI.Residues 346-517 are 31% similar to a (RESTRICTION 2ND COMPONENT REQUIRED FOR LLAI ACTIVITY) protein domain (PD006385) which is seen in Q9ZMQ4_BBBBB.Residues 159-267 are 33% similar to a (PROTEIN ATP-BINDING PROTEASE SUBUNIT REGULATORY HOMOLOG) protein domain (PD000092) which is seen in MCRB_ECOLI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Fri Jan 12 17:50:42 2001","Fri Jan 12 17:49:59 2001","Fri Jan 12 17:49:59 2001","Fri Jan 12 17:49:59 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540720","","","","","","1","","8","PG0971" "PG0870","1032810","1034102","1293","ATGCAAGAGCACGAAAGAATACCATATAATTCTTCTGATTATCGAAATTTTTGGGATGAAGGCATGCGTCTACCCCCTCAAAAGCCAGGTTTGGACAGATGGTTTTTTCAGTGGCAGTGGCGAGATCCTCTAAAAAAGGACGAAAACAATGGAGATAGTATGTCTCACATGAATGAGGCTGGTTATTATGCTTCCTATGTTATCGGTGTTCAGTGGTTTGACAAAGAAAAAACAATGCCCCTTGTCGTGACTACAAAACACGGGTGTGACAAGGTTGACTTCTTGAATATGTTCAGCACGTGCTTCAATAGTGGCATTGCTGCAAAAGATTTCTCCCAAATCTACAAGGTAGATATGGAACAACCTCGTGTCAAGGCTCCAGAACTCAACAGCGTATTGAGTCCATTGATAGTAGTGCATTTTCTTTCAGTTGTTCGAGGGATTGTAAAACGTGGACTCAAGAAAGACTACGTGCAACGAGAGAATAACCTTAACAAGGTCAAAGGGCATATTGCTATTTCTCGCAACGAACGTACCAATGTAATTCGGAAACGATTCGACAAGGTCTTATGCAAGTATCAGGAATACTCCGAGAATATACCGGAAAACCGATTGATCAAGAAGGCATTACTTTTTTCACGGGAAATACTTGAGAATTTAGCGATCACTAGTAGTCTTATTCCCTTGCGACATGCCATCCATCAATATTTATCCGCATTCTGTAATGTGGATGAGCAGATAGAAGTATGGGAGGTAAAAAACATTAAGCATCATAAAATATTCAAAGAATACGACGAGGCTATTAGGCTTGCTCAGATGATACTTCGCCGCTACGACTATAGTATTACAAATATTAGACCTGCCGAAGAAGAATATTGCCCTGTATTTTGGTTAGATATGGCATTGCTCTACGAGCATTACGTTCTTGGCTTGTTGAAAGTAGCCTATGGCAATAAGATTATGTATCAGGCGCATGGCTACACTGGCTATCCTGATTTTATTTGCTATGATCCAAAAATTGTAATGGATACCAAATACATACCTCGATTTGAAAAAGATGGTATTGATGTGTACATTGTAAGACAACTTTGTGGTTATTCTCGAGATCGTCGTTTATTCAAAACATGTCCGGATAAAAGCATTCCATGCCTTATCATCTATCCTAAAGAGGGAGAACCTCAAAATCCATTCAAAGACAAAACCATAGAGCAACTCATAGAAAACGAGGACAAACAACTCTGGGGATTTTATCGCATAGCAGTGCCATTGCCGACGTTAAGAACACCAAATACA","8.50","8.25","50994","MQEHERIPYNSSDYRNFWDEGMRLPPQKPGLDRWFFQWQWRDPLKKDENNGDSMSHMNEAGYYASYVIGVQWFDKEKTMPLVVTTKHGCDKVDFLNMFSTCFNSGIAAKDFSQIYKVDMEQPRVKAPELNSVLSPLIVVHFLSVVRGIVKRGLKKDYVQRENNLNKVKGHIAISRNERTNVIRKRFDKVLCKYQEYSENIPENRLIKKALLFSREILENLAITSSLIPLRHAIHQYLSAFCNVDEQIEVWEVKNIKHHKIFKEYDEAIRLAQMILRRYDYSITNIRPAEEEYCPVFWLDMALLYEHYVLGLLKVAYGNKIMYQAHGYTGYPDFICYDPKIVMDTKYIPRFEKDGIDVYIVRQLCGYSRDRRLFKTCPDKSIPCLIIYPKEGEPQNPFKDKTIEQLIENEDKQLWGFYRIAVPLPTLRTPNT","1032810 1034102","TIGR ID: PG0972","hypothetical protein","Cytoplasm","no significant hits in gapped BLAST.","
noIPR
unintegrated
unintegrated
PD360097\"[141-210]TPD360097


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Jan 12 17:51:40 2001","Fri Jan 12 17:51:40 2001","Fri Jan 12 17:51:40 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540721","","","","","","1","","8","PG0972" "PG0871","1034309","1036621","2313","ATGCTGACGATCCGAAACTTCCTCCTCTTTTGTTGTCTGTCGCTGATAGCGTTTGCTGCCGATGCACAAAGCTCTGTCTCTTCGGGTAGACGACTGACAGAATATGTCAATCCCTTTATCGGAACGGCCAATTACGGTACCACGAATCCGGGAGCAGTATTGCCCAATGGGTTGATGAGCGTTACCCCTTTCAATGTCAGCGGATCGACAGAGAATCGCTTCGACAAAGATTCGCGTTGGTGGAGTGCGCCTTATTCGGCCGACAATAGTTACTGCATCGGTTTCAGCCATGTGAATCTGAGTGGAGTAGGCTGTCCCGAACTGAGTGGAATACTGCTGATGGCCACTTCCGGCACATTCGATCCTGATTACTGCTGCTATGGCTCTTCGCTCAGTCGAGAATATGCGCGCCCGGGAGAATACAAGGCTGTATTGGACAAATACGGTATAGATGCAGCCGTGACCGTAACCGAGCGGACTGCTTTGACCGAATTTGCTTTTCCCGAAGGAGAAGGCCATATCCTGCTGAACCTGGGACAGGCCCTAAGCAATGAATCGGGAGCCTCTGTTCGATTCTTAAACGACTCCACAGTCGTCGGCAGCAGGCTGATGGGGACGTTCTGCTACAATCCGCAAGCAGTTTTTCGTCAGTATTTCGTACTTCAGGTGAGTCGGCGACCGATCTCTGCCGGCTATTGGAAGAAGCAGCCTCCTATGACAGTGGAAGCCCAATGGGATTCGACTGCAGGGAAATATAAGCAGTACGACGGCTACAAGCGTGAGATGAGCGGTGATGACATCGGTGTCCGATTCTCGTTCAACTGCGATCAGGGGGAAAAGATCTATGTACGATCGGCCGTTTCATTCGTCAGCGAAGCCAATGCGCTCTATAATCTGGAAGCGGAGCAAGAAGAGGTGTTCAAAAGTGTCGGAGGGAATCCGGCCAAGGCTTTCTCCGCTATACGCTCTCGCGCTATAGAGCGTTGGGAGGAAGCCCTCGGTACGGTGGAAGTGGAAGGAGGCACACCGGATGAAAAGACGATATTCTATACCGCACTCTATCACCTGCTGATACATCCGAATATCCTACAAGATGCCAATGGAGAATATCCTATGATGGGCAGTGGCAAAACGGGTAATACGGCTCACGACCGCTACACCGTGTTCTCTCTTTGGGACACGTACCGCAATGTACACCCGCTGCTCTGCCTCCTCTATCCGGAGAAGCAGTTGGATATGGTACGGACACTGATCGACATGTACCGAGAGAGCGGGTGGCTGCCGAGATGGGAGCTGTACGGACAGGAGACCCTGACGATGGAGGGCGACCCCTCGCTTATCGTCATCAATGACACTTGGCAAAGGGGCCTTCGTGCTTTCGATACGGCAACGGCCTATGAAGCCATGAAAAAAAATGCTTCTTCGGCAGGAGCGACCCATCCGATCCGTCCTGACAACGACGACTATCTCACCCTCGGCTTCGTACCGCTTCGCGAACAGTACGACAATTCCGTATCGCATGCGCTGGAATACTATCTGGCCGACTGGAATCTGTCCCGGTTTGCCCACGCACTTGGGCATAAAGAAGACGCAGCTCTATTCGGAAAACGCTCGTTGGGCTACAGACACTATTATAATAAGGAGTATGGTATGCTGTGTCCATTGCTGCCGGATGGATCATTCCTCACTCCTTTCGATCCCAAACAGGGTGAAAACTTCGAGCCTAATCCCGGTTTCCACGAGGGCAGTGCTTATAACTATGCCTTTTTCGTTCCCCACGATATACAAGGGCTTGCCCGGCTGATGGGAGGAGCAAAGGTTTTTTCGGAAAGGTTGCAGAAAGTCTTCGATGAAGGATATTATGATCCGACCAACGAGCCGGACATCGCCTATCCTTACCTCTTCTCCTATTTCCCCAAGGAAGCATGGCGAACGCAGAAATTGACCCGGGAGTTGATAGACAAACATTTTTGCAATGCTCCTAACGGCTTGCCCGGTAATGACGATGCCGGTACGATGAGTGCTTGGCTTGTCTATTCCATGCTGGGATTCTACCCTGACTGTCCGGGCAGCCCCACCTATACACTGACCTCGCCGGTATTCCCCCGAGTTAGGATTCGGCTCAATCCGCAGTATTATCCTCAGGGGGAGTTGATCATTACGACCAATACAGAGAATCAACCGACAGATTCCATTTACATCCATACGGTTTCTCTTGGCAATAAAACACTTCCGCATGGAACAAGGCATATCAGCCATGCCGATTTGGTGCGCTGCGGTCACCTCCGTTACGAACTAAGCAATCGTCCTCGA","5.80","-13.98","86660","MLTIRNFLLFCCLSLIAFAADAQSSVSSGRRLTEYVNPFIGTANYGTTNPGAVLPNGLMSVTPFNVSGSTENRFDKDSRWWSAPYSADNSYCIGFSHVNLSGVGCPELSGILLMATSGTFDPDYCCYGSSLSREYARPGEYKAVLDKYGIDAAVTVTERTALTEFAFPEGEGHILLNLGQALSNESGASVRFLNDSTVVGSRLMGTFCYNPQAVFRQYFVLQVSRRPISAGYWKKQPPMTVEAQWDSTAGKYKQYDGYKREMSGDDIGVRFSFNCDQGEKIYVRSAVSFVSEANALYNLEAEQEEVFKSVGGNPAKAFSAIRSRAIERWEEALGTVEVEGGTPDEKTIFYTALYHLLIHPNILQDANGEYPMMGSGKTGNTAHDRYTVFSLWDTYRNVHPLLCLLYPEKQLDMVRTLIDMYRESGWLPRWELYGQETLTMEGDPSLIVINDTWQRGLRAFDTATAYEAMKKNASSAGATHPIRPDNDDYLTLGFVPLREQYDNSVSHALEYYLADWNLSRFAHALGHKEDAALFGKRSLGYRHYYNKEYGMLCPLLPDGSFLTPFDPKQGENFEPNPGFHEGSAYNYAFFVPHDIQGLARLMGGAKVFSERLQKVFDEGYYDPTNEPDIAYPYLFSYFPKEAWRTQKLTRELIDKHFCNAPNGLPGNDDAGTMSAWLVYSMLGFYPDCPGSPTYTLTSPVFPRVRIRLNPQYYPQGELIITTNTENQPTDSIYIHTVSLGNKTLPHGTRHISHADLVRCGHLRYELSNRPR","1034285 1036621","reactive with sera from human periodontitis patients.TIGR ID: PG0973","conserved hypothetical protein/immunoreactive 87kD antigen PG92","Outer membrane, Cytoplasm","PG0523 is essentially identical (99%) to a previously sequencedP.gingivalis protein in GenBank, AAD51077. Few significan hits in gapped BLAST, e.g.; residues 14-721 are 32% similar to emb|CAB61925.1| putative secreted protein of Streptomyces coelicolor A3(2), residues 32-770 are 30% similar to gb|AAF83652.1|AE003923_10 conserved hypothetical protein of Xylella fastidiosa, residues 34-708 are 30% similar to emb|CAA17455.1| hypothetical protein Rv0584 of Mycobacterium tuberculosis.","
InterPro
IPR005887
Family
Alpha-1,2-mannosidase, putative
TIGR01180\"[1-770]Taman2_put
InterPro
IPR012939
Domain
Glycosyl hydrolase 92
PF07971\"[262-770]TGlyco_hydro_92


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 134-708 are 30% similar to a (PROTEIN PUTATIVE SECRETED) protein domain (PD148719) which is seen in O86365_MYCTU.","","Wed Jun 13 17:33:56 MDT 2001","","Wed Jun 13 17:33:56 MDT 2001","Wed Jun 13 17:33:56 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Jun 13 17:33:56 MDT 2001","Wed Jun 13 17:33:56 MDT 2001","","Mon Jun 18 13:27:19 MDT 2001","Fri May 4 14:03:31 MDT 2001","Mon Jun 18 13:32:35 MDT 2001","Fri Jan 12 17:58:06 2001","","Mon Jun 18 13:27:19 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 13-769 are 29% similar to PG0805, residues 34-770 are 28% similar to PG1493, residues 1-770 are 26% similar to PG1492.","Wed Jun 13 17:36:28 MDT 2001","Fri Apr 6 14:55:02 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jun 18 13:27:19 MDT 2001","34540722","","","","","","1","","8","PG0973" "PG0872","1037426","1038415","990","ATGCTGATTACAGAGAGAATTTACGTATTGGAAGATGTCGATGTACAGGCTTTCCTCGGTGTAAATAACAGCAATCTCATGCTCTTGCGCACTCTCTTCCCGAAGTTGCGCCTGGTGGCACACCATAATGTGCTCAAGATTATGGGCGATTCGCGCGAGACGGATCGTTTCCTGGAAGTTCTGGAGCCGATGGTGGCGTATTGCCGTGAGTACAACCTCCTGCCCGAAGATGTGATCCTGCGCATTGCACAGGGTGCCAAGCTGCCCGCTGACGATGTCCCTAAACATCTTATCCTGCATGGAACGGGAGGCAAGAGCATCATTGCCAGAGGTGATAATCAGCAGAAACTTGTGGAGGCTTTCGAGGCCAATGACCTCGTTTTTGCCATCGGCCCTGCCGGAACGGGCAAGACCTTCGTAGCCATCAGTCTGGCTGTCCGTGCCTTGAAAAGCAAGCAGGTGCGCCGTATCATTCTCTCACGTCCTGCCGTGGAAGCCGGCGAGAAGCTGGGATTTCTGCCCGGTGAGATGAAAGATAAGCTCGATCCCTACTTGCAGCCTCTGTATGATGCGCTGGAGGAGATGATCCCTGCCGTGAAGCTAAAAGAGTACATCGAAAACAACATCATCCAGATAGCACCATTGGCCTATATGAGAGGACGTACGCTCAACGATGCCGTGGTCATTCTGGACGAAGCTCAGAATACGACCGAGTTGCAGATGAAAATGTTCCTGACCCGCCTTGGTGCCAATGCCAAGATGATCGTCACCGGCGACATTACGCAGACCGATCTTCCCAGAGGTGTGCACTCCGGTCTGCGTCAGGCTCTGAATATCCTCCAAGGAACGAGAGGGATAGGCTATATTGCATTCCAACGCGCTGATATAGTGCGCCATCCGCTCGTACAGCGTGTGGTGGATGCCTACGACCGGTACGATGCCGAACGGAAAAAGGAGGCCGAAGCCGCAGCTGTCGTTGCGCAAACCATA","7.70","1.42","36763","MLITERIYVLEDVDVQAFLGVNNSNLMLLRTLFPKLRLVAHHNVLKIMGDSRETDRFLEVLEPMVAYCREYNLLPEDVILRIAQGAKLPADDVPKHLILHGTGGKSIIARGDNQQKLVEAFEANDLVFAIGPAGTGKTFVAISLAVRALKSKQVRRIILSRPAVEAGEKLGFLPGEMKDKLDPYLQPLYDALEEMIPAVKLKEYIENNIIQIAPLAYMRGRTLNDAVVILDEAQNTTELQMKMFLTRLGANAKMIVTGDITQTDLPRGVHSGLRQALNILQGTRGIGYIAFQRADIVRHPLVQRVVDAYDRYDAERKKEAEAAAVVAQTI","1037402 1038415","TIGR ID: PG0975","phosphate starvation-inducible protein phoH","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 3-324 are 44% similar to gb|AAF11540.1|AE002037_1 PhoH-related protein of Deinococcus radiodurans, residues 6-319 are 44% similar to emb|CAB66426.1| PhoH-like protein.of Streptomyces coelicolor A3(2), residues 2-313 are 43% similar to emb|CAA12155.1| ORF4 of Bacillus megaterium.This sequence is similar to BT4218.","
InterPro
IPR003714
Family
PhoH-like protein
PF02562\"[106-310]TPhoH
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[110-263]TG3DSA:3.40.50.300
SSF52540\"[109-262]TSSF52540


","BeTs to 6 clades of COG1702COG name: Phosphate starvation-inducible protein PhoH, predicted ATPaseFunctional Class: TThe phylogenetic pattern of COG1702 is -----qvcEbr----------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 104-309 are 60% similar to a (PROTEIN ATP-BINDING PHOH-LIKE PHOSPHATE) protein domain (PD007750) which is seen in PHOL_BACSU.","","Wed Jun 13 17:29:50 MDT 2001","","Wed Jun 13 17:29:50 MDT 2001","Wed Jun 13 17:29:50 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Jun 13 17:29:50 MDT 2001","Wed Jun 13 17:29:50 MDT 2001","","","Tue Apr 3 18:06:57 MDT 2001","Mon Jan 5 11:19:38 2004","Fri Jan 12 18:02:47 2001","","Mon Jun 18 13:33:46 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 126-266 share 40% identity with PG1161, a phoH-related protein.","Wed Jun 13 17:32:51 MDT 2001","Tue Apr 3 18:06:57 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 1 to 310 (E-value = 5.7e-118) place PG0872 in the PhoH family which is described as PhoH-like protein (PF02562)","Mon Jun 18 13:33:46 MDT 2001","34540723","","","","","","1","","8","PG0975" "PG0873","1038468","1039406","939","ATGAAAGAAACATTAGCTCGTACCGACTTCAGACTGCCGGGACAGAAAGCCGTATATCACGGCAAGGTGCGCGACGTATACACGTTGGAGAATGATCTTCTGGTCATGATAGCCACGGATCGCATATCGGCTTTCGACGTAGTCCTTCCGGCCGGTATCCCTTACAAGGGTCAGGTACTCAATCAGATAGCGGCACACTACCTCGATGCCACTCGCGATATAGTTCCGAACTGGAAGATAGCTACGCCCGACCCGATGGTTACTATCGGACACCGTTGCGAACCGTTCAAGGTCGAGATGGTCATCCGCGGCTACATCACAGGAAGTGCATGGCGTGCCTATGCTGCCGGCGAGCGAGTGCTTTGCGGTCTGCCTCTTCCCGAGGGCATGCGCGAAAATCAGCGTTTCGAACATCCCATTATCACCCCTACGACCAAGGCCGATGAGGGTCACGATGAGAATATCTCTCGTCAGGAAATCATTGCTCAGGGACTGGTGTCGAAAGAGGACTACGAGCAGATAGAACGCTATACTTACGCACTTTTCGAGCGCGGTACTCAAATGGCTGCTGAAAAGGGGCTTATTTTGGTGGATACCAAATACGAATTCGGCAAGAAGGACGGTAAGATCTACCTGATCGACGAGATACATACGCCGGACTCTTCTCGCTACTTCTATGCCGAGGGCTATCAGGAGCGATTCGAACGGGGCGAAGCCCAGAAGCAGTTATCCAAGGAGTTTGTTCGTCAGTGGCTGATCGAGAACGGTTTCCAGGGCAAGCCCGGCCAGCAAATACCGAAAATGACGGAAGCATACTGCGACAGTGTGTCGGAGCGGTACATAGAATTGTACGAGCGAGTGGTAGGTAAGCCCTTCGAAAAGGCAGACCTGAGCAATCTGGCAGAAAGAATAGAAAAGAACATAACGGAGTATCTGCGT","5.60","-5.66","36019","MKETLARTDFRLPGQKAVYHGKVRDVYTLENDLLVMIATDRISAFDVVLPAGIPYKGQVLNQIAAHYLDATRDIVPNWKIATPDPMVTIGHRCEPFKVEMVIRGYITGSAWRAYAAGERVLCGLPLPEGMRENQRFEHPIITPTTKADEGHDENISRQEIIAQGLVSKEDYEQIERYTYALFERGTQMAAEKGLILVDTKYEFGKKDGKIYLIDEIHTPDSSRYFYAEGYQERFERGEAQKQLSKEFVRQWLIENGFQGKPGQQIPKMTEAYCDSVSERYIELYERVVGKPFEKADLSNLAERIEKNITEYLR","1038336 1039406","TIGR ID: PG0976","phosphoribosylaminoimidazole-succinocarboxamide synthase","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 12-251 are 50% similar to pir||S45524 5'-phosphoribosyl-4-(N-succinocarboxamide )-5-aminoimidazole synthetase of Vigna aconitifolia, residues 12-312 are 42% similar to dbj|BAB01454.1| 5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole synthetase of Arabidopsis thaliana, residues 11-290 are 39% similar to >emb|CAB56351.1| phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) of Streptomyces coelicolor A3(2).This sequence is similar to BT4217.","
InterPro
IPR001636
Family
SAICAR synthetase
PD003043\"[19-66]TSAICAR_synt
PTHR11609\"[36-311]TSAICAR_synt
PF01259\"[14-272]TSAICAR_synt
PS01057\"[95-109]TSAICAR_SYNTHETASE_1
PS01058\"[196-204]TSAICAR_SYNTHETASE_2
InterPro
IPR013816
Domain
ATP-grasp fold, subdomain 2
G3DSA:3.30.470.20\"[94-239]TATP_grasp_subdomain_2
noIPR
unintegrated
unintegrated
G3DSA:3.30.200.20\"[17-93]TG3DSA:3.30.200.20
PTHR11609:SF1\"[36-311]TPTHR11609:SF1
SSF56104\"[5-294]TSSF56104


","BeTs to 12 clades of COG0152COG name: Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthaseFunctional Class: FThe phylogenetic pattern of COG0152 is amtkyqvcebrh--------xNumber of proteins in this genome belonging to this COG is 1","***** IPB001636 (SAICAR synthetase) with a combined E-value of 1.4e-41. IPB001636A 18-29 IPB001636B 30-71 IPB001636C 96-109 IPB001636D 129-153 IPB001636E 193-206 IPB001636F 211-225 IPB001636G 240-252","Residues 12-255 are 47% similar to a (SYNTHASE SAICAR SYNTHETASE PURINE BIOSYNTHESIS LIGASE) protein domain (PD003043) which is seen in PUR7_ARATH.","","Wed Jun 13 17:25:52 MDT 2001","","Wed Jun 13 17:25:52 MDT 2001","Wed Jun 13 17:25:52 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Jun 13 17:25:52 MDT 2001","Wed Jun 13 17:25:52 MDT 2001","","","Wed Jan 17 17:42:51 MST 2001","Mon Jan 5 11:18:06 2004","Fri Jan 12 18:05:03 2001","Mon Jun 18 13:38:45 MDT 2001","Mon Jun 18 13:38:45 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri May 4 15:35:52 MDT 2001","-54% similar to PDB:1A48 SAICAR SYNTHASE (E_value = 4.8E_44);-54% similar to PDB:1OBD SAICAR-SYNTHASE COMPLEXED WITH ATP (E_value = 4.8E_44);-54% similar to PDB:1OBG SAICAR-SYNTHASE COMPLEXED WITH ATP (E_value = 4.8E_44);-54% similar to PDB:2CNQ ATOMIC RESOLUTION STRUCTURE OF SAICAR-SYNTHASE FROM SACCHAROMYCES CEREVISIAE COMPLEXED WITH ADP, AICAR, SUCCINATE (E_value = 4.8E_44);-54% similar to PDB:2CNU ATOMIC RESOLUTION STRUCTURE OF SAICAR-SYNTHASE FROM SACCHAROMYCES CEREVISIAE COMPLEXED WITH ASPARTIC ACID (E_value = 4.8E_44);","","","Residues 14 to 272 (E-value = 5.9e-79) place PG0873 in the SAICAR_synt family which is described as SAICAR synthetase (PF01259)","Mon Jun 18 13:38:45 MDT 2001","34540724","","","","","","1","","8","PG0976" "PG0874","1039441","1040175","735","ATGCAAAGTCCTGAAAGAATAACCCCCTATGACACCGAATGCCCCAAGAATGAACAGGTAGAGGCCATGTTCAATCATATCGCCGGACATTACGATCGTCTCAATCACCTCTTTTCATGGGGAATGGATCGTGTATGGCGGCAGAAGGCTATCCGTATGATCGAGCCTTTCGCTCCACATACAGTGCTGGATGTGGCTACCGGAACGGGTGATTTAGCCATCGAAATATGCAGGCATATCCCTTCAGTCAAGCAGGTGACGGGTGTCGATCTTTCGTTGGAAATGATGAGGATAGGGGAGCAGAAAGTACGTTCGGAGAATTTGGACAATCGGATTACGTTCATGCAGAAAGATTGTCTCGATCTTCCTTTCGCAGATCATAGTTTCGATGCAGTTACAGTGGCTTTCGGCTTGCGCAACTTTCAGAATATCAAGCTCGGTCTGGAGGAAATGTATCGTGTGCTCAATGAGGGTGCTCCTCTGATGATACTGGAGCTTTCCCGTCCGGTGAGTTTCCCCTGGAAGCAGGGCTACAACTTCTATGCTTCGCATGTGATACCGGTTGTCGGTCGTTTCCTGTCACAGGATGCGGAAGCCTATACCTATCTTCCCGAATCGATAGCAGCCATGCCTCAACGGGAAGAACTGGCGGACCTGATGCTCTCTGTCGGATTTCGGGAAGCGTATTATCGTAGCCTTTCGTTGGAGGTGGCAACCGTTTATATGGGACTGAAA","5.40","-6.45","28071","MQSPERITPYDTECPKNEQVEAMFNHIAGHYDRLNHLFSWGMDRVWRQKAIRMIEPFAPHTVLDVATGTGDLAIEICRHIPSVKQVTGVDLSLEMMRIGEQKVRSENLDNRITFMQKDCLDLPFADHSFDAVTVAFGLRNFQNIKLGLEEMYRVLNEGAPLMILELSRPVSFPWKQGYNFYASHVIPVVGRFLSQDAEAYTYLPESIAAMPQREELADLMLSVGFREAYYRSLSLEVATVYMGLK","1039441 1040175","TIGR ID: PG0977","ubiquinone biosynthesis methyltransferase","Cytoplasm","Numerous significant hits in gapped BLAST, e.g.; residues 5-245 are 42% similar to gb|AAF11949.1|AE002071_3 biquinone/menaquinone biosynthesis methyltransferase of Deinococcus radiodurans, residues 16-245 are 34% similar to gb|AAC76836.1| -octaprenyl-6-methoxy-1,4-benzoquinone --> 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinone of Escherichia coli K12, residues 13-245 are 33% similar to gb|AAG08448.1|AE004919_9 ubiquinone biosynthesis methyltransferase UbiE of Pseudomonas aeruginosa.","
InterPro
IPR004033
Family
UbiE/COQ5 methyltransferase
PTHR10108:SF24\"[16-245]TUbiE/COQ5mtfrase
PF01209\"[16-245]TUbie_methyltran
TIGR01934\"[20-245]TMenG_MenH_UbiE
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.150\"[38-236]TG3DSA:3.40.50.150
PTHR10108\"[16-245]TPTHR10108
SSF53335\"[1-239]TSSF53335


","BeTs to 10 clades of COG2226COG name: Methylase involved in ubiquinone/menaquinone biosynthesis UbiE/COQ5Functional Class: HThe phylogenetic pattern of COG2226 is ----yqvcebr-uj----inxNumber of proteins in this genome belonging to this COG is 1","***** IPB000339 (ubiE/COQ5 methyltransferase family) with a combined E-value of 4.2e-53. IPB000339A 20-47 IPB000339B 63-74 IPB000339C 90-102 IPB000339D 128-167 IPB000339E 185-196 IPB000339F 203-245","Residues 90-203 are 36% similar to a (PROTEIN METHYLTRANSFERASE TRANSFERASE BIOSYNTHESIS) protein domain (PD000198) which is seen in UBIE_ECOLI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Jan 17 17:34:30 MST 2001","Wed Jan 17 17:34:30 MST 2001","Wed Mar 14 17:31:30 MST 2001","Wed Mar 14 17:31:30 MST 2001","Wed Mar 14 17:31:30 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 24-158 show 28% similarity to PG1628, methyltransferase.","Wed Mar 14 17:31:30 MST 2001","Wed Mar 14 17:31:30 MST 2001","-50% similar to PDB:1XXL The crystal structure of YcgJ protein from Bacillus subitilis at 2.1 A resolution (E_value = 1.5E_10);-50% similar to PDB:2GLU The crystal structure of YcgJ protein from Bacillus subitilis (E_value = 1.5E_10);-51% similar to PDB:1VL5 Crystal structure of hypothetical protein (BH2331) from Bacillus halodurans at 1.95 A resolution (E_value = 3.2E_10);","","","Residues 12 to 245 (E-value = 4e-52) place PG0874 in the Ubie_methyltran family which is described as ubiE/COQ5 methyltransferase family (PF01209)","Wed Mar 14 17:31:30 MST 2001","34540725","","","","","","1","","8","PG0977" "PG0875","1040175","1040921","747","ATGAAAAAGTACGGTCTGATCGGCTATCCACTGGCTCATTCGCTGTCTGCCGAATTCTTCAACGCCAAATTCAAGACGGAGGGAATCAATGCCGTCTACGAACTTTTCCCTCTGGAGTCGCTCTCCCAACTGAAGAGTCTGCTTTCGCTCCATCCCTCTCTTCAGGGGTTCAACGTGACATCGCCGTACAAAGTGGAGGTGATGCGCTATCTGGATCGGATAGACGAGGAAGCGGAATTGACCGGAGCCGTCAATACGATTCGGGTAGAACGTGCGCGCTTTCGTCGTCCCCATCTCGTCGGTTATAATACCGATGTGAAAGGCTTTGCCGATAGCCTGGAGCTGATCCGAAAGCCGTGGCATACGCAAGCTCTCGTCTTGGGATCGGGTGGGGCAGCTCTGGCTGTGATGCGCGCTCTGAAGAAGATGGGAATAGTACATCGGCAGGTCAGTCGCACGCCTTCGGCTCCCGGTGTGTATGCATATTCGGATCTGACGCCGGAGATTATCGAACGGCACAAGCTGATCGTCAATGCCACTCCGGTGGGTATGTATCCACATATAGACCAATGTCCGTCTATTCCGTTCGAGGGTATAGGTGCAGAGCATCTCTGTTATGATCTGATCTATAATCCGCAGGAAACGATCTTCATGCATCGCGCTCAAGCACAGGGTGCTTCTGTGCAGAACGGATTGGAGATGCTGCTCATACAGGCGTTGTGCAGTTGGCGTATCTGGAACGAACGA","8.40","4.03","27997","MKKYGLIGYPLAHSLSAEFFNAKFKTEGINAVYELFPLESLSQLKSLLSLHPSLQGFNVTSPYKVEVMRYLDRIDEEAELTGAVNTIRVERARFRRPHLVGYNTDVKGFADSLELIRKPWHTQALVLGSGGAALAVMRALKKMGIVHRQVSRTPSAPGVYAYSDLTPEIIERHKLIVNATPVGMYPHIDQCPSIPFEGIGAEHLCYDLIYNPQETIFMHRAQAQGASVQNGLEMLLIQALCSWRIWNER","1040175 1040921 [Shadowed by 1133]","Shikimate 5-dehydrogenase catalyses the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids.TIGR ID: PG0978","shikimate 5-dehydrogenase","Cytoplasm","Numerous hits with gapped BLAST to shikimate 5-dehydrogenases; e.g. residues 2-246 are 32% similar to (U67551) of Methanococcus jannaschii, residues 2-246 are 31% similar to shikimate 5-dehydrogenase (D84432) of Bacillus subtilis, residues 1-247 are 28% similar to shikimate 5-dehydrogenase (U18997) of E. coli, residues 56-246 are 24% similar to shikimate 5-dehydrogenase (AE001310) of Chlamydia trachomatis.","
InterPro
IPR006151
Domain
Shikimate/quinate 5-dehydrogenase
PF01488\"[109-218]TShikimate_DH
InterPro
IPR013708
Domain
Shikimate dehydrogenase substrate binding, N-terminal
PF08501\"[6-87]TShikimate_dh_N
noIPR
unintegrated
unintegrated
G3DSA:3.40.192.10\"[4-102]TG3DSA:3.40.192.10
G3DSA:3.40.50.720\"[103-249]TG3DSA:3.40.50.720
PTHR21089\"[131-247]TPTHR21089
SSF51735\"[105-246]TSSF51735
SSF53223\"[1-104]TSSF53223


","BeTs to 12 clades of COG0169COG name: Shikimate 5-dehydrogenaseFunctional Class: EThe phylogenetic pattern of COG0169 is amt-yqvcEbrHuj----in-Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 21-105 are 43% similar to a (SHIKIMATE 5-DEHYDROGENASE DEHYDROGENASE OXIDOREDUCTASE) protein domain (PD120824) which is seen in AROE_METJA.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Fri Apr 7 15:05:44 MDT 2000","Tue Apr 17 16:05:50 MDT 2001","Fri Apr 7 15:05:44 MDT 2000","Tue Apr 17 16:05:50 MDT 2001","Fri Apr 7 15:05:44 MDT 2000","Tue Apr 17 16:05:50 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Fri Apr 7 15:05:44 MDT 2000","Tue Apr 17 16:05:50 MDT 2001","-49% similar to PDB:1NVT Crystal structure of Shikimate Dehydrogenase (AROE or MJ1084) in complex with NADP+ (E_value = 1.1E_29);-44% similar to PDB:1WXD Crystal Structure of Shikimate 5-Dehydrogenase (AroE) from Thermus Thermophilus HB8 (E_value = 4.6E_20);-44% similar to PDB:2CY0 Crystal Structure of Shikimate 5-Dehydrogenase (AroE) from Thermus Thermophilus HB8 in complex with NADP (E_value = 4.6E_20);-44% similar to PDB:2D5C Crystal Structure of Shikimate 5-Dehydrogenase (AroE) from Thermus Thermophilus HB8 in complex with shikimate (E_value = 4.6E_20);-44% similar to PDB:2EV9 Crystal Structure of Shikimate 5-Dehydrogenase (AroE) from Thermus Thermophilus HB8 in complex with NADP(H) and shikimate (E_value = 4.6E_20);","","","Residues 19 to 249 (E-value = 9.2e-50) place PG0875 in the Shikimate_DH family which is described as Shikimate / quinate 5-dehydrogenase (PF01488)","Tue Apr 17 16:05:50 MDT 2001","34540726","","","Anton IA, Coggins JR. Sequencing and overexpression of the Escherichia coli aroE gene encoding shikimate dehydrogenase. Biochem J 1988 Jan 15;249(2):319-26. PubMed: 3277621. ","","Fri Apr 7 15:05:44 MDT 2000","1","","8","PG0978" "PG0877","1041039","1043273","2235","GTGCCGGACGGTAGCAGACTATTAGACAGGGTAACGATCGCAAGCGAAACGGGCAGTATCGCTCTGCCGGAAGATATTCGGGACTATACCCTCCAGCAACCCAATTACAGACTGTTCGGGATGACTCGCTGGCTACTGCGCGTCTATAGCAGCTCGAATCCGAACAGCAACAGCTGGTGGAACCGTTCGCTCCGGAAAATGGGCGAACCGCCTGTCCTCATCGATTCTGTCCTCACCGATCGTACTGCCAACCGTCTGGCAAAGGCGATGGCCGGCGATGGCTTTCTCGATGCTACTGCTCGTGCCGTGGTAGACACCGGCTTGTACAAGAAAGCTCGCATTACTTATCTGATTCAGCCCGGAAGCCGTTATTATATACGCAATATGGCTTTGGATGTGAAGAATCCACTCCTTCCTCCCGTTGCGCTTGGCAATTCGCTTCCTTCGGCATACAAGGTCGGGATCAGCGAGGGTTCTCCCTTGTCGCCCATCGTACTCGATGAAGAGAGAAAGGCGATAGCTCGTCATATGCGCAACAACGGCTTCTGGAAGTTCTCCGCCGAGGATGTTTATTATGAAGCAGATACTACCGTTTCAGGAGGATCGGGTACGAAATCTGCCGATCTGAAATTAGTGGTCAATGGCATCGGGCGTTATCCATATCGGATCGGCAGGGTATTCTTTCATGCCGATTATGATCCTCTCGAATCGGACTTCAGAGTTCAGGAGCTGCCACGTATCGATTCGATTTCGCGTGGCGATTACACTGTTTACTATGGGAGTAGGGGACGTTATATCCGGGCATCGGCTCTCACGCGGTCGGTGTCCGTTACACCGGGAGCTTTTTTCTGCGAGGATGATGTGGAACGCTCTTATATCAAGCTGAATGCGCTCCCTATCGTTCGGAACGTGAATATCCGATTTGTGGAGCACAATGGTAAGGATGAGATTGCTCTGGCGGATAGCTCTCGCCTTGTGGACTGCTATATTCTTACCGTTCCGGCCAAGAGCAAATCGTTCGAAGCCGAAGTCCTCGGCACCAATTCCGCTGGAGACTTCGGGGCGGCTTTGTCTCTCGGTTTCACCGATCGCAATTTGTTTCGTGGGGCGGAGATGTTCAATATCAAACTCAAGGGTGCTTACGAAGCCATTCGCAAGGGTTCGCACAGCTTCATGGAATATGGGGTGGAAAGCTCGCTCCGTTTCCCTCGTCTCCTCTTCCCATTCATTTCTGACGAAACGCGCCGGCGGCTACGGGCATCCACGGAATGGAAGATCGGGTATAATTACCAGACACGTCCGGAGTTTGATCGGGTGATTCTCTCCGCTCAACTCAATTATTCATGGCAGACCTACCTGCACAATCGTCTGCGTCATACGATCCGCCTGCTGGATGTCGATTATCTCCATCTCCCGTACATCGATCCCGACTTCGCCCAATCCCTTCCGCCTACGACTGCACTGTATAACTACACGGAGCAGTTTATCCTCGGCTCGGCATATATACTGAACTATACCACGGCTTCGTCCATGGAGCGTACCGTATCCAATCCTTTTACGGCACGGTTCAGTATCCAGACAGCCGGCAACCTGCTGCAAGCCATTTCTTATCTGACCGATTCTCCGAAAGACGAACACGGGTTGTATAAAATGTTCGGTCTGCACTATGCTCAGTTCGTCAAGCTCGATCTCGATCTGGCTAAAACCGTTCTTCTCGAAAAGGACAATACTTTGGCACTGCATCTGGGTTTCGGACTGGCTTTCCCTTATGGCAATGCTCGCCATATACCCTTTGAGTTACGTTACTTTGCCGGAGGATCGAACAGCGTTCGCGGCTGGAGTGTCCGTACCCTCGGCCCGGGGAGTATGAAGATGACTCCGGACAAGACCTTCTTCGATCAGATGGGTGATATTCGTCTGGATCTGAATGTCGAATACAGGACAAAGCTGTTCTGGAAGTTTCGCGCAGCAGCTTTTGTCGATGCCGGCAATGTCTGGACGATAAAGGAGTATGAGAATCAGGAGGACGGTCTCTTTCGTTTCGATCGCTTCTACAAGGAAATAGCTTTGGCCTACGGTCTGGGGCTTCGTCTCGACTTCGATTATTTCCTTGTGCGGCTGGATGCCGGACTGAAAGCCTACGATCCTCAGCAGACAGGGCGTTACAAATGGGCTATCACACGCCCAAACCTTTCTTCCAATTTCGCTTGGCACATTGCAGTAGGCTATCCGTTC","9.90","12.85","84692","VPDGSRLLDRVTIASETGSIALPEDIRDYTLQQPNYRLFGMTRWLLRVYSSSNPNSNSWWNRSLRKMGEPPVLIDSVLTDRTANRLAKAMAGDGFLDATARAVVDTGLYKKARITYLIQPGSRYYIRNMALDVKNPLLPPVALGNSLPSAYKVGISEGSPLSPIVLDEERKAIARHMRNNGFWKFSAEDVYYEADTTVSGGSGTKSADLKLVVNGIGRYPYRIGRVFFHADYDPLESDFRVQELPRIDSISRGDYTVYYGSRGRYIRASALTRSVSVTPGAFFCEDDVERSYIKLNALPIVRNVNIRFVEHNGKDEIALADSSRLVDCYILTVPAKSKSFEAEVLGTNSAGDFGAALSLGFTDRNLFRGAEMFNIKLKGAYEAIRKGSHSFMEYGVESSLRFPRLLFPFISDETRRRLRASTEWKIGYNYQTRPEFDRVILSAQLNYSWQTYLHNRLRHTIRLLDVDYLHLPYIDPDFAQSLPPTTALYNYTEQFILGSAYILNYTTASSMERTVSNPFTARFSIQTAGNLLQAISYLTDSPKDEHGLYKMFGLHYAQFVKLDLDLAKTVLLEKDNTLALHLGFGLAFPYGNARHIPFELRYFAGGSNSVRGWSVRTLGPGSMKMTPDKTFFDQMGDIRLDLNVEYRTKLFWKFRAAAFVDAGNVWTIKEYENQEDGLFRFDRFYKEIALAYGLGLRLDFDYFLVRLDAGLKAYDPQQTGRYKWAITRPNLSSNFAWHIAVGYPF","1040952 1043273","TIGR ID: PG0980","conserved hypothetical protein; possible outer membrane protein","Outer membrane, Cytoplasm","This sequence corresponds to gi:34397042 in Genbank.Its nearest neighbor in the NR database is gi:29346224 from Bacteroides thetaiotaomicron VPI-5482.","
InterPro
IPR000184
Family
Bacterial surface antigen (D15)
PTHR12815\"[416-708]TSORTING AND ASSEMBLY MACHINERY (SAM50) PROTEIN
PF01103\"[365-745]TBac_surface_Ag


","BeTs to 4 clades of COG0729COG name: Predicted outer membrane proteinFunctional Class: MThe phylogenetic pattern of COG0729 is -----QvcE--Huj--olinxNumber of proteins in this genome belonging to this COG is 3","***** PF01103 (Bacterial surface antigen) with a combined E-value of 4.8e-06. PF01103C 94-136 PF01103J 586-624","No significant hit to the ProDom database.","","Wed Jun 13 17:22:01 MDT 2001","","Wed Jun 13 17:22:01 MDT 2001","Wed Jun 13 17:22:01 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Jun 13 17:22:01 MDT 2001","Wed Jun 13 17:22:01 MDT 2001","","Fri Mar 4 13:19:42 2005","Fri Mar 4 13:17:24 2005","Fri Mar 4 13:17:24 2005","Wed Mar 14 17:35:02 MST 2001","Mon Jun 18 13:44:06 MDT 2001","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 15-745 show 26% similarity to PG1832, a hypothetical protein.","Wed Jun 13 17:23:46 MDT 2001","Wed Mar 14 17:35:02 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 355 to 745 (E-value = 9.5e-34) place PG0877 in the Bac_surface_Ag family which is described as Surface antigen (PF01103)","Mon Jun 18 13:44:06 MDT 2001","34540728","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Fri Mar 4 13:19:42 2005","","1","","8","PG0980" "PG0878","1044452","1046701","2250","ATGAACAAAAACAACGATCTAAAAGAAAATGACAACAAACTGTCAAATGTGCCTGAACCTAATCGGCAAGAAGCTATTGCCTATTATAACAGAGGCGTCGGCTGCTATATTGTAGGATCGTATGAAGAAGCGATTAAAGACTATTCTAAGGCAATAGAATTAGACGGTAAATTCATCCCTGCGTATTATAATAGAGGAGTTGCATATTTTAAGAAAGGATCGTATGAAGAAGCGATTAAAGACTTTTCTAAGGCAATAGAATTAGACGATAAATTCGTCCATGCGTATCATGGTAGAGGAAATGCATATTCTAAGAAAGGATGGTATAAAAAAGCGATTAAAGACTATTCTCAGGCAATAGAATTAGACGATAAATACATCCTTGGGTATAATGGTAGAGGAGTTGCATATTGTGAGAAAGGATCGTATGAAGAAGCGATTAAAGACTATTCTAAGGCAATAGAATTAGACGATAAATACGCCCCTGCGTATCATGGTAGAGGAAATGCATATTCTAAGAAAGGATGGTATAAAAAAGCGATTAAAGACTATTCTCAGGCAATAGAATTAGACGGTAAATTCGCCCATGCGTATTATGGTAGAGGAAATGCATATTGTGAGAAAGGATCATATGAAGAAGCGATTAAAGACTATTCTCAGGCAATAGAATTAGACGATAAATACGCCCCTGCGTATCATGGTAGAGGAAATGCATATTCTAAGAAAGGATGGTATAAAAAAGCGATTAAAGACTATTCTCAGGCAATAGAATTAGACGATAAATACATCCTTGGGTATAATGGTAGAGGAGTTGCATATTATGAGATAGGAGATTTTGAAAAAAGTCAAGCGGACTTCAATACAGTGCTATATCTGATTCTCTCCAATGAATTAATAAATCTTATAAGACCTATAAGACCTGGACTATCCCGATTAATAAGGGCTTTTGATGGCTATCCTCACAACTGTCACACTCTATTTCAGTACATATCTCTACCGACAGATTCTTTTTTCTCTCAAGGCCCCACTTCTTTTATCTCCTATTGGCAACGTGTTAGCCCTATACAAGACTTCTTGCTTTTACTACACTACTATGAGCTGCAGTTACCGCACGAAGAGTTCGTAAGTTTTTATCCCATTCTCATCTATAATCTCGGAGGATGTTCTGAGGCTTTCAAAGTTTTTGACGAAGAATTGGATACAGGAGAACAACCTCTTTCAGCCCAACAATACTACTATTTTATTCTCTCTGCTCTAAGTTTGAGTGAAGATGCCAATCTTGGTCAAAAGAACATTATCACAGATGCCATAGACAAAGTATCGACTCAAAAAGAGCCGGCTCCTATAGATTATTACTACTTAGGAATGATACACCTCTTGAACAATGATAAAGAATCTGCAGTACAGGCCTTTCATTGCTCTTCTATTCCTTTTTCCCGAATAATGACAGATAGCCTGAACGAAACAACTCCCAGTCAAGAGTTAAGGCATCTCTTGCAAAACATACATTCAAAAGAGATACAGCCCATAGATATTGAGCAAGGAAATTTGTCCCAATTCGAAGAATACCTTCATCTTTTGGAGGTTTGCTATTTCCCAGAGATGGCAAGAAAGTATTTGGAGAAAGAAGTAAAAATGCTTTGGAATGCTTTTGAACTGACAGAAGAAGCTCGTAAGGAGTTGGCAGACAAAATACGTTTCCTCGAATGTAAAAGATTTGTAAGTCAACTGAAAACAGTAAGCCTGTCGCAAGAAGAGTTTCAACGAGTCGAAAGCACTATCCTGTTTGAAACACAAAACTTATCTTCGAAAGAAGAAATTGAGGCTAAAATCGTGAGGTTAATCAGTTCTCATGGACAGGATACCACTCACCGGGAAATAATTCTCAAGCTTATACAATACCACTCCTATAATGGAGATATTGGTGCAGAAGAAATGTTCTTCTTAATGCTTTGGTTCGATCGAAAGATTTCGAACAAAAAGTCAAAGAATATTTCTGCAACATCAATGGATATAATGATAGCAATATTTTCTGGTTGCATAACACACTATTTAGGCAATAATAGCCTATTTATTAGTTGCCTTGGGGCTGCTATTCCTGTAATTGCAGGAAAATTCATCGAGAATGAGACTTCTTCCGAAGAAATGAGCTATGAAGAATTCAAAAAACAGCTCTTTGAGTGCAGCGAGGTAGATGACCTCATCAAACTTATTAATAAATCGGGTTATTGCCGTCCGATAAAAGTTGTT","5.60","-16.14","86450","MNKNNDLKENDNKLSNVPEPNRQEAIAYYNRGVGCYIVGSYEEAIKDYSKAIELDGKFIPAYYNRGVAYFKKGSYEEAIKDFSKAIELDDKFVHAYHGRGNAYSKKGWYKKAIKDYSQAIELDDKYILGYNGRGVAYCEKGSYEEAIKDYSKAIELDDKYAPAYHGRGNAYSKKGWYKKAIKDYSQAIELDGKFAHAYYGRGNAYCEKGSYEEAIKDYSQAIELDDKYAPAYHGRGNAYSKKGWYKKAIKDYSQAIELDDKYILGYNGRGVAYYEIGDFEKSQADFNTVLYLILSNELINLIRPIRPGLSRLIRAFDGYPHNCHTLFQYISLPTDSFFSQGPTSFISYWQRVSPIQDFLLLLHYYELQLPHEEFVSFYPILIYNLGGCSEAFKVFDEELDTGEQPLSAQQYYYFILSALSLSEDANLGQKNIITDAIDKVSTQKEPAPIDYYYLGMIHLLNNDKESAVQAFHCSSIPFSRIMTDSLNETTPSQELRHLLQNIHSKEIQPIDIEQGNLSQFEEYLHLLEVCYFPEMARKYLEKEVKMLWNAFELTEEARKELADKIRFLECKRFVSQLKTVSLSQEEFQRVESTILFETQNLSSKEEIEAKIVRLISSHGQDTTHREIILKLIQYHSYNGDIGAEEMFFLMLWFDRKISNKKSKNISATSMDIMIAIFSGCITHYLGNNSLFISCLGAAIPVIAGKFIENETSSEEMSYEEFKKQLFECSEVDDLIKLINKSGYCRPIKVV","1044407 1046701","N-terminal end is O-linked GlcNAc transferaseC-terminal end is a putative outer membrane proteinTIGR ID: PG0982","O-linked GlcNAc transferase","Cytoplasm","Numerous hits in gapped BLAST to hypothetical protein and various identified protein sequences,e.g.gi|13472041| has overlapping regions of similarity,residues 21-292 are 42% similar to a hypothetical protein from Mesorhizobium loti.Residues 1-234 are 35% similar to an O-linked GlcNAc transferase from Mesorhizobium loti gi|13472730|. ","
InterPro
IPR001440
Repeat
Tetratricopeptide TPR_1
PF00515\"[25-58]T\"[59-92]T\"[93-126]T\"[127-160]T\"[161-194]T\"[195-228]T\"[229-262]T\"[263-296]TTPR_1
InterPro
IPR011990
Domain
Tetratricopeptide-like helical
G3DSA:1.25.40.10\"[7-281]TTPR-like_helical
InterPro
IPR013026
Domain
Tetratricopeptide region
SM00028\"[25-58]T\"[59-92]T\"[93-126]T\"[127-160]T\"[161-194]T\"[195-228]T\"[229-262]T\"[263-296]TTPR
PS50005\"[25-58]T\"[59-92]T\"[93-126]T\"[127-160]T\"[161-194]T\"[195-228]T\"[229-262]T\"[263-296]TTPR
PS50293\"[25-296]TTPR_REGION
noIPR
unintegrated
unintegrated
PTHR23083\"[21-290]TPTHR23083
PTHR23083:SF20\"[21-290]TPTHR23083:SF20
SSF48452\"[18-292]TSSF48452


","BeTs to 13 clades of COG0457COG name: TPR-repeat-containing proteinsFunctional Class: RThe phylogenetic pattern of COG0457 is AMTKYQVCEB-HUJ--OLINXNumber of proteins in this genome belonging to this COG is 21","***** PF00515 (TPR Domain) with a combined E-value of 7.6e-10. PF00515 66-90 PF00515 202-226 PF00515 100-124 PF00515 236-260 PF00515 134-158 PF00515 168-192 PF00515 32-56 PF00515 270-294","Residues 38-282 are 28% similar to a (PROTEIN REPEAT TPR DOMAIN NUCLEAR PUTATIVE RECEPTOR) protein domain (PD000069) which is seen in O26186_METTH.Residues 195-292 are 29% similar to a (TETRATRICOPEPTIDE REPEAT PROTEIN) protein domain (PD061853) which is seen in Q99615_HUMAN.","","Wed Jun 13 16:58:46 MDT 2001","","Wed Jun 13 16:58:46 MDT 2001","Wed Jun 13 16:58:46 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Jun 13 16:58:46 MDT 2001","Wed Jun 13 16:58:46 MDT 2001","","Mon Jun 18 13:46:29 MDT 2001","Wed Mar 22 11:12:15 MST 2000","Mon Jun 18 13:51:36 MDT 2001","Wed Mar 14 17:43:46 MST 2001","Mon Jun 18 13:46:29 MDT 2001","Mon Jun 18 13:46:29 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG0878 shows weak similarity to multiple domains of PG1924 and PG1718, a conserved protein (putative Olinked-GlcNAc transferase homolog).","Wed Mar 14 17:43:46 MST 2001","Wed Mar 14 17:43:46 MST 2001","-73% similar to PDB:2FO7 Crystal structure of an 8 repeat consensus TPR superhelix (trigonal crystal form) (E_value = 6.6E_30);-48% similar to PDB:1W3B THE SUPERHELICAL TPR DOMAIN OF O-LINKED GLCNAC TRANSFERASE REVEALS STRUCTURAL SIMILARITIES TO IMPORTIN ALPHA. (E_value = 2.2E_25);-67% similar to PDB:1NA0 Design of Stable alpha-Helical Arrays from an Idealized TPR Motif (E_value = 4.6E_23);-66% similar to PDB:1NA3 Design of Stable alpha-Helical Arrays from an Idealized TPR Motif (E_value = 6.0E_15);-73% similar to PDB:2AVP Crystal structure of an 8 repeat consensus TPR superhelix (E_value = 1.6E_12);","","","Residues 25 to 58 (E-value = 2.4e-09) place PG0878 in the TPR family which is described as TPR Domain (PF00515)Residues 59 to 92 (E-value = 3e-12) place PG0878 in the TPR family which is described as TPR Domain (PF00515)Residues 93 to 126 (E-value = 1.4e-07) place PG0878 in the TPR family which is described as TPR Domain (PF00515)Residues 127 to 160 (E-value = 5.6e-09) place PG0878 in the TPR family which is described as TPR Domain (PF00515)Residues 161 to 194 (E-value = 8.6e-09) place PG0878 in the TPR family which is described as TPR Domain (PF00515)Residues 195 to 228 (E-value = 6.5e-10) place PG0878 in the TPR family which is described as TPR Domain (PF00515)Residues 229 to 262 (E-value = 1.3e-08) place PG0878 in the TPR family which is described as TPR Domain (PF00515)","Mon Jun 18 13:46:29 MDT 2001","34540729","","","","","","1","","","PG0982" "PG0879","1047011","1046808","204","ATGAAGATGCAAAAAGGATCCATTTGTTACAAACGGAAGGAAAAACTTCTGCCGGCACCGAATCCAATCGGAGGGAAAATGGCGACGAAAGGGGATGAAATGCCGGCACCAATATCTTTAGACGTATATATAGAAGATAACTTCGGCAAGGTGCAACAAATCACTTTTAACTTCAACAAGAAGCAAGAGCTTAGTCCCTCGTCA","10.10","3.93","7601","MKMQKGSICYKRKEKLLPAPNPIGGKMATKGDEMPAPISLDVYIEDNFGKVQQITFNFNKKQELSPSS","1047458 1046808","TIGR ID: PG0984","hypothetical protein","Periplasm, Cytoplasm","No significant hits in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Wed Jun 13 16:57:02 MDT 2001","","Wed Jun 13 16:57:02 MDT 2001","Wed Jun 13 16:57:02 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Jun 13 16:57:02 MDT 2001","Wed Jun 13 16:57:02 MDT 2001","","","Wed Jan 17 16:59:22 MST 2001","Wed Jan 17 16:59:22 MST 2001","Wed Jan 17 16:59:22 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Jun 13 16:57:02 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jun 18 13:55:18 MDT 2001","34540730","","","","","","1","","","PG0984" "PG0879.1","1047072","1047575","504","GTGAATACTATCGCTTTCAAGGAGATTTTTCTTCCGATTCGCCCCTCCATTCGGGCTGTTTGTCACGCATTTTTGCGCGACGACGAGGAGGCTGAGGATGCCACCCAAGAGGTCTATTTGCGTTTGTGGGAAGCACGAATGCGGCTGGACGGACTGGACAATCCGAGGGCGTATGCCATCCGAATAGCTCGGAACTACTGCCTGAACCTGATCCGAAAGGCAAGCAATAGTCCTTATCCGACCTCTTTGGAGGCTGCCGAGGTACAGGAAGTGTCGGAGACGCATGGCGGTGAGGCCGATCTGCTGCTCTCGGAGCAAATCGGGAGGCTGCGGCAGTGGTTGAGGGGTGTGTCCGAACTGTATCGGACGGTCTTTGCCATGAGCCACTTCCGGCGGCTTTCGAATGGCGAGATTGCCGAGCGGTTGGGACTGACGGAGGGCAATGTGAGGGTGATACTGTGCAGACTGCGTAGAGAAGCTAAGGAGGTGATGAAAGATGATGCG","0.00","0.00","19316","VNTIAFKEIFLPIRPSIRAVCHAFLRDDEEAEDATQEVYLRLWEARMRLDGLDNPRAYAIRIARNYCLNLIRKASNSPYPTSLEAAEVQEVSETHGGEADLLLSEQIGRLRQWLRGVSELYRTVFAMSHFRRLSNGEIAERLGLTEGNVRVILCRLRREAKEVMKDDA","","TIGR ID: PG0985","RNA polymerase sigma factor (possible RNA polymerase sigma-24 factor)","Cytoplasm","Numerous hits using gapped BLAST to RNA polymerase sigma factors,including residues 15-168 are 30% similar to gi|3322352|gb|AAC65087.1| (AE001193) RNA polymerase sigma-24 factor (rpoE) in Treponema pallidum and residues 6-149 are 25% similar to >gi|6015985|gb|AAF01488.1|AF137263_7 (AF137263) RNA polymerase sigma factor SigZ-like protein in Bacteroides thetaiotaomicron.","
InterPro
IPR007627
Domain
RNA polymerase sigma-70 region 2
PF04542\"[9-77]TSigma70_r2
InterPro
IPR013249
Domain
RNA polymerase sigma factor 70, region 4 type 2
PF08281\"[107-158]TSigma70_r4_2
InterPro
IPR014284
Domain
RNA polymerase sigma-70
TIGR02937\"[4-164]Tsigma70-ECF: RNA polymerase sigma factor, s
noIPR
unintegrated
unintegrated
G3DSA:1.10.1740.10\"[5-79]Tno description


","BeTs to 6 clades of COG1595 COG name: Specialized sigma subunits of RNA polymeraseFunctional Class: KThe phylogenetic pattern of COG0593 is ------VCEBRH-----l--- Number of proteins in this genome belonging to this COG is 6","","","Thu Jul 5 18:43:25 MDT 2001","Thu Jul 5 18:43:25 MDT 2001","Thu Jul 5 18:43:25 MDT 2001","Thu Jul 5 18:43:25 MDT 2001","Thu Jul 5 18:44:14 MDT 2001","Thu Jul 5 18:43:25 MDT 2001","Thu Jul 5 18:43:25 MDT 2001","Thu Jul 5 18:44:14 MDT 2001","Thu Jul 5 18:44:14 MDT 2001","Thu Jul 5 18:43:25 MDT 2001","Thu Jul 5 18:43:25 MDT 2001","Thu Jul 5 19:04:22 MDT 2001","Mon Aug 20 17:20:59 2001","Mon Aug 20 17:20:59 2001","Thu Jul 5 18:43:25 MDT 2001","Thu Jul 5 18:43:25 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 5-164 are 27% similar to PG0194 conserved hypothetical protein (probable extracytoplasmic function) and residues 25-165 are 26% similar to PG1449 RNA polymerase sigma factor ECF subfamily (sigma-70).","Thu Jul 5 18:48:54 MDT 2001","Thu Jul 5 18:43:25 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 9 to 77 (E-value = 2.1e-18) place PG0879.1 in the Sigma70_r2 family which is described as Sigma-70 region 2 (PF04542)Residues 113 to 162 (E-value = 1e-05) place PG0879.1 in the Sigma70_r4 family which is described as Sigma-70, region 4 (PF04545)","Thu Jul 5 18:43:25 MDT 2001","34540731","","","Xu,J., Bjursell,M.K., Himrod,J., Deng,S., Carmichael,L.K.,Chiang,H.C., Hooper,L.V. and Gordon,J.I.A Genomic View of the Human-Bacteroides thetaiotaomicron SymbiosisScience 299 (5615), 2074-2076 (2003)PUBMED 12663928","","Tue Nov 18 15:58:05 2003","1","Thu Jul 5 18:43:25 MDT 2001","","PG0985" "PG0880","1047568","1048125","558","ATGATGCGTGAAGAGAGAAATAAAATCGACCGGCTACTGGAAAGTTTTTATGCCGGTACCACTTCTCCGCAAGAGGAGTTGGAGCTGTATTGCTTGCTGGAGGGATTGCCGGATGCGGCTCCCTATCATTCGGACTTGCAGCTTTTGCGGGCTTTGATCGGTCTTCctGrGCGTGAAACGGCAATGGAAGATGATTCGGACAAAGTTCTCTTGGAAAAGATGGCGAGTTGGGAGGATCGTGTCCGGCATCCTTCAAGGCGGTTGTCGCTTCGGTTGGTACGCTACGGGGCTGTAGCTTGTGTGGCTTTGGCACTGGCCATAGGTGTGGCGGTGGAGCTGAATACGGTGGGACGACTTTCGTCCAACAGGAACGGGATCGCTCTCGATCGGGACGAAGCCGTCCGGGAAACGGCCTACGCCATGGAGCTATTGGAGTATTGTCTCGATCGCGGGGCTGATGCGGAGGGGGAGTTTGTGGAAATGCTCGGATGGGAAGAGGAAGCCTTGTATGCGGAAACGGCTATGTCCGAAGAGGAATATGAAAGAAACACAATAGAA","4.30","-18.63","44548","MMREERNKIDRLLESFYAGTTSPQEELELYCLLEGLPDAAPYHSDLQLLRALIGLPXRETAMEDDSDKVLLEKMASWEDRVRHPSRRLSLRLVRYGAVACVALALAIGVAVELNTVGRLSSNRNGIALDRDEAVRETAYAMELLEYCLDRGADAEGEFVEMLGWEEEALYAETAMSEEEYERNTIE","1047568 1048125 [Shorter 1140 129 85]","TIGR ID: PG0986","hypothetical protein","Cytoplasm","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
tmhmm\"[92-110]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","Tue Feb 6 13:25:00 MST 2001","Tue Feb 6 13:25:00 MST 2001","","","","","Tue Feb 6 13:25:00 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540732","","","","","","1","","","PG0986" "PG0881","1048809","1047997","813","TTGTTTGCGGGCTTTTTCCATCTCTCGGCGGAGCTTTTCCCGCTCCTTGCGCCATTCTTGATTTTGCTTTTTCTGAGCCTTCATATACTCTTGGTAGTATTTCTCCTTTTGCTTGCGATATTTTCGCATAGCCTCCGAGTTGTCAGGCTTCAAAACATTCCACTCCTTGCGGAAATAACGCGAACGGCCATTGGGATAAATCATTTGATTGAGCTGCTCTCGCGTGAATGTCCCTTCCATGACAAGTGCACGTATTTCCTCCGCATCCTCCGTGTACAGGACAAGTGTCCGGAACGTATTCTTCTTGCCCTTCTCGGCATAGAAACCGATTCGCTCGTTGCCATCCTGCACAGACATCAGCTCCTCATAGTCCTTACGGCTCCCGCCCATGATCGGGGAAAAGGTTCTGCGAATCAGAGCCGCGGACGAAGAACGATTCATATCGGTCGAAAAAATGTACATCCCATCCAGCAACGACGTATTGATGCTGATATCCGTCTTCCGTTTCAGATACTTCGAAGCCATTTTGAGCATCGGCTTGGAGAGATAGACGGATTCGATGCCGTTATCTTTCCTAAGTTCTTCCACTTTTATACGCTGAGCATCGGyTACCGGGGACAACATACATATAGCCACGATCAGGGCTACAATCATTTTTGCTTTCATCTCTATTCTCCTTTTTTATTCTATTGTGTTTCTTTCATATTCCTCTTCGGACATAGCCGTTTCCGCATACAAGGCTTCCTCTTCCCATCCGAGCATTTCCACAAACTCCCCCTCCGCATCAGCCCCGCGATCGAGACAATACTCCAA","10.30","13.56","70674","LFAGFFHLSAELFPLLAPFLILLFLSLHILLVVFLLLLAIFSHSLRVVRLQNIPLLAEITRTAIGINHLIELLSRECPFHDKCTYFLRILRVQDKCPERILLALLGIETDSLVAILHRHQLLIVLTAPAHDRGKGSANQSRGRRTIHIGRKNVHPIQQRRIDADIRLPFQILRSHFEHRLGEIDGFDAVIFPKFFHFYTLSIGYRGQHTYSHDQGYNHFCFHLYSPFLFYCVSFIFLFGHSRFRIQGFLFPSEHFHKLPLRISPAIETILQ","1048809 1047997 [Bad Olap 1139 129 14]","NO TIGR ID corresponds to this gene.","hypothetical protein","Inner membrane, Cytoplasm","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-50]?signal-peptide
tmhmm\"[19-41]?\"[219-239]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","Tue Feb 6 13:25:50 MST 2001","Tue Feb 6 13:25:50 MST 2001","","","","","Tue Feb 6 13:25:50 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG0882","1048144","1048917","774","ATGAAAGCAAAAATGATTGTAGCCCTGATCGTGGCTATATGTATGTTGTCCCCGGTArCCGATGCTCAGCGTATAAAAGTGGAAGAACTTAGGAAAGATAACGGCATCGAATCCGTCTATCTCTCCAAGCCGATGCTCAAAATGGCTTCGAAGTATCTGAAACGGAAGACGGATATCAGCATCAATACGTCGTTGCTGGATGGGATGTACATTTTTTCGACCGATATGAATCGTTCTTCGTCCGCGGCTCTGATTCGCAGAACCTTTTCCCCGATCATGGGCGGGAGCCGTAAGGACTATGAGGAGCTGATGTCTGTGCAGGATGGCAACGAGCGAATCGGTTTCTATGCCGAGAAGGGCAAGAAGAATACGTTCCGGACACTTGTCCTGTACACGGAGGATGCGGAGGAAATACGTGCACTTGTCATGGAAGGGACATTCACGCGAGAGCAGCTCAATCAAATGATTTATCCCAATGGCCGTTCGCGTTATTTCCGCAAGGAGTGGAATGTTTTGAAGCCTGACAACTCGGAGGCTATGCGAAAATATCGCAAGCAAAAGGAGAAATACTACCAAGAGTATATGAAGGCTCAGAAAAAGCAAAATCAAGAATGGCGCAAGGAGCGGGAAAAGCTCCGCCGAGAGATGGAAAAAGCCCGCAAACAATACCGCGAGGAAATGAAAAAGGCCCGGGAAGAACTCCGAAAGTCAGGAGCAGAATCCTATCTGATTTTTCCCGATTCTACCTGGAAGATAGATATGGCCGATCTGGAT","10.50","14.98","62415","MKAKMIVALIVAICMLSPVXDAQRIKVEELRKDNGIESVYLSKPMLKMASKYLKRKTDISINTSLLDGMYIFSTDMNRSSSAALIRRTFSPIMGGSRKDYEELMSVQDGNERIGFYAEKGKKNTFRTLVLYTEDAEEIRALVMEGTFTREQLNQMIYPNGRSRYFRKEWNVLKPDNSEAMRKYRKQKEKYYQEYMKAQKKQNQEWRKEREKLRREMEKARKQYREEMKKAREELRKSGAESYLIFPDSTWKIDMADLD","1048144 1048917 [Shorter 1140 666 99]","TIGR ID: PG0987","hypothetical protein","Periplasm, Inner membrane, Cytoplasm","This sequence corresponds to gi:34397047 in Genbank.","
noIPR
unintegrated
unintegrated
signalp\"[1-22]?signal-peptide
tmhmm\"[5-25]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","Tue Feb 6 13:26:47 MST 2001","Tue Feb 6 13:26:47 MST 2001","","","Thu Mar 8 13:44:03 MST 2001","Fri Mar 4 13:42:17 2005","Tue Feb 6 13:26:47 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 8 13:42:53 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Mar 8 13:42:53 MST 2001","34540733","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Fri Mar 4 13:42:17 2005","","1","","","PG0987" "PG0883","1049670","1049248","423","TTGACGGACGAGCAGGGTTTGGTAGAAACAGTGGTCACGACCTCGGCTAATTGTGCAGACACGGTTGTATTACCTGAGCTGATCAAGAAGTCCAAGTTGCCGGGAGGAATTAGTGTTTTGGCCGACAAAGGCTATTGCAGCAAGAAGAATTCGGAGTATTTGGCCCGTCAAGGTTTGATAGATGGAATTATGCTCAAGGCTCATCGAGGTCAAGTCCTCAGTGAAAGTCAGAAACAACTCAATCGGATGATCAGTAAGACACGCTGCTTGATAGAACGGACCTTCGGTAGTATTCGACGATGGTTCTGTGGCGGACGATGTCGCTACCGAGGGTTAGCCAAGACACATACCCGGAATATCCTTGAAGCTATGGCCTACAATCTCAAGCGTATGCCGGGGCTTCTTGTGCTTCAAGGCGCAAAA","10.70","13.23","15667","LTDEQGLVETVVTTSANCADTVVLPELIKKSKLPGGISVLADKGYCSKKNSEYLARQGLIDGIMLKAHRGQVLSESQKQLNRMISKTRCLIERTFGSIRRWFCGGRCRYRGLAKTHTRNILEAMAYNLKRMPGLLVLQGAK","1049670 1049248","Member of the IS5 family of elements. PG0883 and PG0884 could together constitute a full-length ISPg1 element such as PG1662.TIGR ID: PG0988","ISPg1 fragment (IS1106-related fragment)","Cytoplasm","PG0883 is equivalent to the previously sequenced AJ130872 and AB015879 in GenBANK. Residues 2-128 are 42% similar to the IS1106 sequence of N.meningitidis (AJ001313).","
InterPro
IPR002559
Domain
Transposase, IS4-like
PF01609\"[1-128]TTransposase_11


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 84-136 are 73% similar to a (TRANSPOSASE ORF7 INSERTION SEQUENCE IS1126-LIKE GENE) protein domain (PD187845) which is seen in Q9ZA61_PORGI.Residues 1-82 are 46% similar to a (TRANSPOSASE PLASMID PROTEIN ELEMENT) protein domain (PD004652) which is seen in Q9ZAD0_PORGI.","","","","","","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","","","","Fri Feb 16 15:35:36 MST 2001","Wed Feb 14 12:20:58 MST 2001","Wed Feb 14 12:20:30 MST 2001","Wed Feb 14 12:19:04 MST 2001","","Wed Feb 14 12:19:04 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG0883 is similar to the C-terminal regions of PG1231, PG1798, PG1662, PG1422, PG1267, PG1184, PG1087, PG1062, PG1050, PG0918, PG0763, PG0756, PG0740, PG0169, PG1919, PG1230, PG0686, PG0044, PG1755, PG1099, PG0499, PG0420, PG0689, PG1215, PG0839, PG1665, PG1895, PG0730, PG1608, PG1159, all ISPg1-related elements.","Fri Feb 16 15:37:29 MST 2001","Wed Feb 14 12:19:04 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 1 to 128 (E-value = 7.2e-08) place PG0883 in the Transposase_11 family which is described as Transposase DDE domain (PF01609)","Wed Jun 13 16:55:16 MDT 2001","","","Hanley,S.A., Aduse-Opoku,J. and Curtis,M.A.A 55-kilodalton immunodominant antigen of Porphyromonas gingivalisW50 has arisen via horizontal gene transferInfect. Immun. 67 (3), 1157-1171 (1999)Maley,J. and Roberts,I.S.Characterisation of IS1126 from Porphyromonas gingivalis W83: a new member of the IS4 family of insertion sequence elementsMicrobiol. Lett. 123 (1-2), 219-224 (1994)Shibata,Y., Hayakawa,M., Takiguchi,H., Shiroza,T. and Abiko,Y.Determination and characterization of the hemagglutinin-associatedshort motifs found in Porphyromonas gingivalis multiple geneproducts. J. Biol. Chem. 274 (8), 5012-5020 (1999)","Knight,A.I., Ni,H., Cartwright,K.A. and McFadden,J.J.Identification and characterization of a novel insertion sequence, IS1106, downstream of the porA gene in B15 Neisseria meningitidis.Mol. Microbiol. 6 (11), 1565-1573 (1992)","Wed Feb 14 12:19:04 MST 2001","Wed Feb 14 12:19:04 MST 2001","1","","","PG0988" "PG0884","1050259","1049762","498","ATGAAACACTCTTTCCTGCGTCAAATCAATGCCGGTTTTGATTGGCGTGGTATTCGCACACTGCTGAACAAGAAATACACCAAGACACAGAATGCCATAGGTAACCCTGCCTACGATGCGCTGTTGATGTTCAAGATTCTACTCTTGGAGACTTGGTATGGTTTGAGTGACTACGAGGTTGAGGAGTGCATCAACGACTCCTTGCTTTTCAGTGAATTCCTTGGCTTGGACCTCGGCTTCCCTTCCCCCGACCATAGCACGATCAGTCGTTTCCGTAGTGAACTCACTCGCTTGGGGATTATGGATAAACTCCTTCGGGAGCTGAACAAGCAGTTCAAGAAGCACGGCATCAGCCGTATCGATCAAGGCGCCATCGTTGATGCGAGCATTGTGGATAGTCCTTACGCCCCTGATGGCAACGTGGTCATAGAAGTGGCTGAAGATCGAGAGGATACTCGTTCGGAGGAAGCTCGTACACAGCCAGGAGGCTTATCATTG","5.10","-4.32","18809","MKHSFLRQINAGFDWRGIRTLLNKKYTKTQNAIGNPAYDALLMFKILLLETWYGLSDYEVEECINDSLLFSEFLGLDLGFPSPDHSTISRFRSELTRLGIMDKLLRELNKQFKKHGISRIDQGAIVDASIVDSPYAPDGNVVIEVAEDREDTRSEEARTQPGGLSL","1050259 1049762 [Delay by 69 1144 93 33]","Member of the IS5 family of elements. PG0883 and PG0884 could together constitute a full-length ISPg1 element such as PG1662.NO TIGR ID corresponds to this gene.","ISPg1 fragment","Cytoplasm","PG0884 is similar to portions of the previously sequenced ISPg1 transposases in GenBANK, AB015879, AJ130872, AB019363. REsidues 34-134 are 39% similar to (X76949) of ORF1169a in Bacteroides fragilis.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 2-84 are 63% similar to a (TRANSPOSASE PROTEIN INSERTION ELEMENT) protein domain (PD007264) which is seen in Q9ZNB4_PORGI.Residues 85-132 are 62% similar to a (TRANSPOSASE ORF7 INSERTION SEQUENCE IS1126-LIKE GENE) protein domain (PD187846) which is seen in Q9ZA61_PORGI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Fri Feb 16 13:46:32 MST 2001","Mon Feb 12 16:22:02 MST 2001","Mon Feb 12 16:29:07 MST 2001","Mon Feb 12 16:22:02 MST 2001","","Mon Feb 12 16:22:02 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG0884 is virtually identical to PG0731 and similar to N-terminal regions of PG1662, PG1422, PG1267, PG1062, PG1050, PG0918, PG0740, PG0169, PG1099, PG0499, PG0420, PG0732, PG0842, PG1159, PG1607, PG1919, PG1798, PG1755, PG1665, PG1230, PG1215, PG1184, PG1087, PG0839, PG0763, PG0756, PG0689, PG0686, PG1895, PG0044, PG1608, all ISPg1-related transposases or fragments.","Fri Feb 16 13:37:46 MST 2001","Mon Feb 12 16:22:02 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","Hanley,S.A., Aduse-Opoku,J. and Curtis,M.A.A 55-kilodalton immunodominant antigen of Porphyromonas gingivalisW50 has arisen via horizontal gene transferInfect. Immun. 67 (3), 1157-1171 (1999)Maley,J. and Roberts,I.S.Characterisation of IS1126 from Porphyromonas gingivalis W83: a new member of the IS4 family of insertion sequence elementsMicrobiol. Lett. 123 (1-2), 219-224 (1994)Shibata,Y., Hayakawa,M., Takiguchi,H., Shiroza,T. and Abiko,Y.Determination and characterization of the hemagglutinin-associatedshort motifs found in Porphyromonas gingivalis multiple geneproducts. J. Biol. Chem. 274 (8), 5012-5020 (1999)","Knight,A.I., Ni,H., Cartwright,K.A. and McFadden,J.J.Identification and characterization of a novel insertion sequence, IS1106, downstream of the porA gene in B15 Neisseria meningitidis.Mol. Microbiol. 6 (11), 1565-1573 (1992)","Mon Feb 12 16:29:07 MST 2001","Mon Feb 12 16:29:07 MST 2001","1","","","" "PG0885","1050236","1050913","678","TTGACGCAGGAAAGAGTGTTTCATGCGATCTCTGCGAAGCTGAGTGTATACTTGCAGAAAGCTTGGTGCCGATTCAGTTTGTTTGGTTGCCATATTTATGCTCTTGTTTATACGTGTAAAATACTAAATATCATTGATATACGCAAGCAATGCAGGCAAATATGTCGCAAAAATGCCGTGCAATGGTCTCTTGAGGAGCTCGTGCAAGTAGCTCCTCAAGGGGGGGGTTACAACTACTTTCACTCCTTACTGCCACCCCTTTCACTCGCTCCTTTTATGCCAAGAACTCCTCTTCCCTCCACCTCCTTATTTTGCAAAGGTCTCCAAATGTATGCCTGGGAGAGGAAAGGGTGGGGGCAGCATAAGACCTGGTTTTCTATTCAAATGAAGCCACGCTATTTCTATCTTGACCTGAGACCATCGTACATCTTCCCTGCACAGCACTATGTTTTTAGAATGCATATGCGTGAAATAAAAAAAGATGTGTCAAAATCTTTTCGACACATCTTCTTTATATTGCTTTACCAGCACCTCAATGAGAGGTGTGGCAAGCGTTTAGTTTTTTACTTTAGCCACAATAGCTCTGAAAGCTTCGGGGTGGTTCATCGCCAAATCGGCGAGAACTTTGCGATTGATTTCGATACCATTTGCATGGAGAGCACCCATCAGGCGAGAATA","10.40","17.25","26833","LTQERVFHAISAKLSVYLQKAWCRFSLFGCHIYALVYTCKILNIIDIRKQCRQICRKNAVQWSLEELVQVAPQGGGYNYFHSLLPPLSLAPFMPRTPLPSTSLFCKGLQMYAWERKGWGQHKTWFSIQMKPRYFYLDLRPSYIFPAQHYVFRMHMREIKKDVSKSFRHIFFILLYQHLNERCGKRLVFYFSHNSSESFGVVHRQIGENFAIDFDTICMESTHQARI","1050236 1050913 [Bad Olap 1145 120 0]","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No significant hits in gapped BLAST.","
noIPR
unintegrated
unintegrated
tmhmm\"[21-39]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Jan 17 16:50:52 MST 2001","Wed Jan 17 16:50:52 MST 2001","Wed Jan 17 16:50:52 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 68-111 of PG0885 show strong similarity (81-93%) tothe amino terminal ~44 residues of:PG0169.1 PG0685PG0838 calcium ion-transporting ATPasePG1086 PG1229 PG1100 PG1895.1. ","Tue Apr 3 18:11:34 MDT 2001","Wed Mar 14 17:56:22 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Mar 14 17:56:22 MST 2001","","","","","","","1","","","" "PG0886","1051138","1050794","345","ATGCCAAGATCAGTCAATCACGTTGCATCGCGAGCCAAACGCAAAAGAATTCTGAAGCTTACTCGCGGATATTTTGGTGCTCGTAAGAATGTATGGACGGTTGCTAAGAACACGTGGGAAAAAGGTTTGACCTACGCTTATCGTGACCGTAAGAGCAAGAAACGCAATTTCCGTGCTCTGTGGATACAGCGTATCAACGCTGCAGCTCGTTTGGAAGGAATGTCATATTCTCGCCTGATGGGTGCTCTCCATGCAAATGGTATCGAAATCAATCGCAAAGTTCTCGCCGATTTGGCGATGAACCACCCCGAAGCTTTCAGAGCTATTGTGGCTAAAGTAAAAAAC","12.20","21.70","13278","MPRSVNHVASRAKRKRILKLTRGYFGARKNVWTVAKNTWEKGLTYAYRDRKSKKRNFRALWIQRINAAARLEGMSYSRLMGALHANGIEINRKVLADLAMNHPEAFRAIVAKVKN","1051138 1050794 [Shorter 1144 120 99]","L20 is thought to bind directly to 23S rRNA. It is necessary for in vitro assembly process of the 50S ribosomal subunit.TIGR ID: PG0989","50S ribosomal protein L20","Cytoplasm, Extracellular","Numerous significant hits using gapped BLAST to L20 ribosomal proteins from, i.e., Pseudomonas fluorescens (gi: 4972786), Bacillus subtilis (gi: 2500289), Rickettsia prowazekii (gi: 6225976), Escherichia coli (gi: 132763), among others.This protein is similar to CT835, a predicted 50S ribosomal protein L20 from Chlamydia trachomatis.","
InterPro
IPR005812
Family
Ribosomal protein L20, bacterial and organelle form
PR00062\"[12-41]T\"[42-71]T\"[75-101]TRIBOSOMALL20
TIGR01032\"[1-114]TrplT_bact
PS00937\"[54-70]TRIBOSOMAL_L20
InterPro
IPR005813
Family
Ribosomal protein L20
PD002389\"[8-69]TRibosomal_L20
PTHR10986\"[1-115]TRibosomal_L20
PF00453\"[2-109]TRibosomal_L20
noIPR
unintegrated
unintegrated
G3DSA:1.10.1900.20\"[61-115]TG3DSA:1.10.1900.20
SSF74731\"[61-115]TSSF74731


","BeTs to 12 clades of COG0292COG name: Ribosomal protein L20Functional Class: JThe phylogenetic pattern of COG0292 is -----qvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB001081 (Ribosomal protein L20) with a combined E-value of 1.1e-33. IPB001081A 3-31 IPB001081B 39-76","Residues 8-109 are 58% similar to a (RIBOSOMAL PROTEIN L20 50S) protein domain (PD002389) which is seen in RL20_PSESY.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Tue Jul 17 15:01:42 2007","Thu Mar 30 16:31:41 MST 2000","Fri Apr 7 13:34:09 MDT 2000","Wed May 23 15:33:50 MDT 2001","Wed May 23 15:33:50 MDT 2001","Wed May 23 15:33:50 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Fri Apr 7 13:34:09 MDT 2000","Tue Jul 17 15:01:42 2007","-66% similar to PDB:1NKW Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans (E_value = 1.2E_26);-66% similar to PDB:1NWX COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH ABT-773 (E_value = 1.2E_26);-66% similar to PDB:1NWY COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN (E_value = 1.2E_26);-66% similar to PDB:1SM1 COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN (E_value = 1.2E_26);-66% similar to PDB:1XBP Inhibition of peptide bond formation by pleuromutilins: The structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with Tiamulin (E_value = 1.2E_26);","","","Residues 2 to 109 (E-value = 1.8e-39) place PG0886 in the Ribosomal_L20 family which is described as Ribosomal protein L20 (PF00453)","Wed May 23 15:33:50 MDT 2001","34540734","","","Kitten,T. and Willis,D.K. 1996. Suppression of a sensor kinase-dependent phenotype in Pseudomonas syringae by ribosomal proteins L35 and L20. J. Bacteriol. 178(6):, 1548-1555. PubMed: 8626280.Wipat A, Carter N, Brignell SC, Guy BJ, Piper K, Sanders J, Emmerson PT, Harwood CR. 1996. The dnaB-pheA (256 degrees-240 degrees) region of the Bacillus subtilis chromosome containing genes responsible for stress responses, the utilization of plant cell walls and primary metabolism. Microbiology 142 (Pt 11):3067-78. PubMed: 8969504.Pon CL, Brombach M, Thamm S, Gualerzi CO. 1989. Cloning and characterization of a gene cluster from Bacillus stearothermophilus comprising infC, rpmI and rplT. Mol Gen Genet 218(2):355-7. PubMed: 2779520.","","Tue Jul 17 15:01:42 2007","1","","","PG0989" "PG0886.1","1051448","1051254","195","ATGCCTAAATTGAAGACTAACTCCGGTGCCAAAAAGAGGTTCGCCCTTACCGGAACAGGTAAAATCAAGCGTAAGCACGCTTTCAAGAGTCACATCTTGACAAAGAAAACGAAAAAGCAAAAGCGTAACCTCACCTACTTCTCTACAGTACATAAGGTAGATGAGAATGCCGTTAAGCAGCTCCTTTGTCTCCGA","0.00","0.00","7479","MPKLKTNSGAKKRFALTGTGKIKRKHAFKSHILTKKTKKQKRNLTYFSTVHKVDENAVKQLLCLR","","TIGR ID: PG0990","50S ribosomal protein L35","Periplasm, Cytoplasm","Numerous hits using gapped BLAST all to 50S ribosomal protein L35 including residues 1-62 are 56% similar to gi|7379636|emb|CAB84203.1| (AL162754) of Neisseria meningitidis and residues 1-55 are 54% similar to gi|1574779|gb|AAC22964.1| (U32811) of Haemophilus influenzae.","
InterPro
IPR001706
Family
Ribosomal protein L35
PD003417\"[4-50]TRibosomal_L35
PR00064\"[3-20]T\"[21-35]T\"[36-54]TRIBOSOMALL35
PF01632\"[4-62]TRibosomal_L35p
TIGR00001\"[2-64]TrpmI_bact
PS00936\"[5-31]TRIBOSOMAL_L35


","BeTs to 12 clades of COG0291COG name: Ribosomal protein L35Functional Class: JThe phylogenetic pattern of COG0593 is ----yqvcebrhujgpolinx Number of proteins in this genome belonging to this COG is 1","","","Thu Jul 5 11:05:58 MDT 2001","Thu Jul 5 11:05:58 MDT 2001","Thu Jul 5 11:05:58 MDT 2001","Thu Jul 5 11:05:58 MDT 2001","Thu Jul 5 11:06:39 MDT 2001","Thu Jul 5 11:05:58 MDT 2001","Thu Jul 5 11:05:58 MDT 2001","Thu Jul 5 11:06:39 MDT 2001","Thu Jul 5 11:06:39 MDT 2001","Thu Jul 5 11:05:58 MDT 2001","Mon Jul 9 18:13:20 MDT 2001","Thu Jul 5 11:05:58 MDT 2001","Thu Jul 5 11:14:48 MDT 2001","Thu Jul 5 11:26:14 MDT 2001","Thu Jul 5 11:05:58 MDT 2001","Thu Jul 5 11:05:58 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Thu Jul 5 11:14:48 MDT 2001","Thu Jul 5 11:05:58 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 4 to 62 (E-value = 6.3e-26) place PG0886.1 in the Ribosomal_L35p family which is described as Ribosomal protein L35 (PF01632)","Thu Jul 5 11:05:58 MDT 2001","34540735","","","","","","1","Thu Jul 5 11:05:58 MDT 2001","","PG0990" "PG0887","1052131","1051529","603","ATGGCAATCGATAAAACGAAGAATCAACATCGGATCAACGAAGCAATCCGAGTAAAAGAGGTGCGTCTCGTCGGTGACAATGTGGAGCAAGGTGTGTACAACATACAAGAAGCACGACGCATTGCCGAAAGCCAAGATTTGGATTTGGTCGAGATCTCACCAAATGCTGATCCGCCCGTATGCCGCGTTACCGACTATCAGAAGTTTGTTTACCAACTGAAGAAGAAGGCTAAAGAACAAAAAGCCAAATCGGTGAAAATCGTAATCAAGGAGATCCGTTTCGGCCCCCAGACGGACGACCACGATTACAACTTCAAACTCAAACACGCAAAAGAGTTTTTGCAAGAAGGCTCCAAGGTAAAAGCCTACGTATTTTTTCGTGGACGCTCGATCCTTTTCAAGGAGCAAGGAGAAGTCCTTTTGCTTCGTTTTGCCAATGATTTGGAAGACTTCGCTCGCGTAGAGCAAATGCCTATTTTAGAAGGTAAGCGTATGACAATCATGCTTACTCCAAAGTCTGCATCGAAAAAAGGACATACACCACCGAAAACACAGGTGGAGGCTTCTAAACAAGCCAACGAGTCCGCAGAAACCGAAGAAGAA","9.70","4.93","23133","MAIDKTKNQHRINEAIRVKEVRLVGDNVEQGVYNIQEARRIAESQDLDLVEISPNADPPVCRVTDYQKFVYQLKKKAKEQKAKSVKIVIKEIRFGPQTDDHDYNFKLKHAKEFLQEGSKVKAYVFFRGRSILFKEQGEVLLLRFANDLEDFARVEQMPILEGKRMTIMLTPKSASKKGHTPPKTQVEASKQANESAETEEE","1052131 1051529","IF-3 is thought to bind to 30S ribosomal subunits and thereby promote protein synthesis initiation.TIGR ID: PG0991","translation initiation factor 3 (IF-3)","Cytoplasm","Numerous significant hits using gapped BLAST from, i.e., Myxococcus xanthus (gi: 1352320), Aquifex aeolicus (gi: 6016323), Vibrio cholerae (gi: 6016327), among others.This protein is similar to CT833, a predicted translation initiation factor 3 from Chlamydia trachomatis.","
InterPro
IPR001288
Family
Initiation factor 3
PD002880\"[94-172]TIF3
G3DSA:3.10.20.80\"[6-82]TIF3
G3DSA:3.30.110.10\"[83-176]TIF3
PTHR10938\"[26-172]TIF3
PF00707\"[86-173]TIF3_C
PF05198\"[7-81]TIF3_N
TIGR00168\"[12-174]TinfC
noIPR
unintegrated
unintegrated
SSF54364\"[8-82]TSSF54364
SSF55200\"[86-175]TSSF55200


","BeTs to 12 clades of COG0290COG name: Translation initiation factor IF3Functional Class:  JThe phylogenetic pattern of COG0290 is -----qvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB001288 (Initiation factor 3) with a combined E-value of 1.3e-50. IPB001288A 27-75 IPB001288B 96-144 IPB001288C 159-172","Residues 13-171 are 42% similar to a (INITIATION FACTOR IF-3 PROTEIN) protein domain (PD002880) which is seen in DSG_MYXXA.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Thu Mar 30 16:29:42 MST 2000","Thu Mar 30 16:29:42 MST 2000","Fri Apr 7 13:27:09 MDT 2000","Fri Apr 7 13:27:09 MDT 2000","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Fri Apr 7 13:27:09 MDT 2000","","-69% similar to PDB:1TIG TRANSLATION INITIATION FACTOR 3 C-TERMINAL DOMAIN (E_value = 2.2E_16);-60% similar to PDB:1I96 CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH THE TRANSLATION INITIATION FACTOR IF3 (C-TERMINAL DOMAIN) (E_value = 3.8E_16);-63% similar to PDB:2IFE TRANSLATION INITIATION FACTOR IF3 FROM ESCHERICHIA COLI RIBOSOME BINDING DOMAIN (RESIDUES 84-180) (E_value = 3.9E_13);-73% similar to PDB:1TIF TRANSLATION INITIATION FACTOR 3 N-TERMINAL DOMAIN (E_value = 7.4E_12);-52% similar to PDB:2H9F Crystal structure of hypothetical protein (np_249484.1) from Pseudomonas aeruginosa at 1.95 A resolution (E_value = 7.4E_12);","","","Residues 7 to 81 (E-value = 1.7e-37) place PG0887 in the IF3_N family which is described as Translation initiation factor IF-3, N-terminal domain (PF05198)Residues 86 to 173 (E-value = 4.1e-40) place PG0887 in the IF3_C family which is described as Translation initiation factor IF-3, C-terminal domain (PF00707)","Fri Apr 7 13:27:09 MDT 2000","34540736","","","Cheng,Y.L., Kalman,L.V. and Kaiser,D. 1994. The dsg gene of Myxococcus xanthus encodes a protein similar to translation initiation factor IF3. J. Bacteriol. 176(5): 1427-1433. PubMed: 8113184.Kalman,L.V., Cheng,Y.L. and Kaiser,D. 1994. The Myxococcus xanthus dsg gene product performs functions of translation initiation factor IF3 in vivo. J. Bacteriol. 176 (5), 1434-1442. PubMed: 8113185.Pon,C.L., Brombach,M., Thamm,S. and Gualerzi,C.O. 1989. Cloning and characterization of a gene cluster from Bacillus stearothermophilus comprising infC, rpmI and rplT. Mol. Gen. Genet. 218(2): 355-357. PubMed: 2779520.","","Fri Apr 7 13:27:09 MDT 2000","1","","","PG0991" "PG0888","1054196","1052238","1959","ATGATCAAGATCACCTTTCCGGATGGCAACTTCCGCGAATATGAAGCGGGGATTACCGGTTGGGATATAGCCGGTAGCATCAGTCCCCGTTTGCAGCAAGATGTATTAGCTGCAGGCGTGAATGGACAAGTGTGGGATTTGCATCGTCAAATCAATGAAGATGCAGAAGTGAAGTTATTCAAATGGGACGATGCGGAAGGCAAGCATGCATTTTGGCACTCCAGTGCTCACCTGATGGCCGAAGCATTGGAAGAATTGTATCCGGGTATCAAATTCGGTATTGGACCAGCCATTGAAAACGGGTTTTACTATGACGTGGATCCGGGCGAAGGCATTTCTATCAAAGATGCCGATCTGCCTGCCATCGAAAAAAGAATGCAAGATTTGGCTGCTCGCAAAGAAACGATCATTCGACGCGACATAGCCAAGGCTGACGCTCTCCGGATGTTCGGAGATAAGGATGATCAATATAAAGTGGAGCTGATCAGCGAACTGGCTGACGGTACCATTACGACCTATACGCAAGGTGGGTTCACCGACCTTTGTCGCGGTCCTCACTTACCCAATACCGGTTACATTAAAGCGATCAAGCTTTTAAGTGTAGCCGGAGCTTACTGGCGCGGCGACGAAAAGAGAAAACAGCTGACACGAATCTATGGAATCTCTTTCCCAAAGAAAAAGATGTTGGATGAATATCTCGAGCTTTTGGAAGAGGCTAAGAAGCGCGACCATCGAAAGATCGGTAAGGAGCTCGAACTCTTCGCTTTCTCCCAAAATGTAGGTGCCGGCTTGCCGCTTTGGCTACCGCGAGGCACACAGCTCCGTTTGCGTTTGGAAGACTTTCTGAAGCAGATACAGAAGCACTTTGGCTACCAACAGGTAATCACGCCGCATATCGGCAATAAGAATCTCTACATCACCTCCGGGCACTATGCCAAATACGGACAGGATTCTTTCCGTCCGATCAATACGCCGCAGGAAGGAGAAGAGTTCATGCTAAAGCCAATGAATTGCCCTCACCACTGCGAGATATTCAAGATCACTCCACATTCCTATCGCGATCTACCGATTCGTTTGGCCGAGTTCGGGACTGTGTATCGTTACGAGCAAAGCGGAGAGTTGCACGGGCTGACACGTGTAAGAGGTTTCACGCAGGACGATGCTCACTTGTTCTGTCGTCCGGATCAGCTAAAAGAAGAATTTTGCAAAGTAATGGATATCATTTTCATTATTTTCAAAGCTCTTGATTTCAAAAACTTCGAAGCACAAATATCACTTCGAGATAAAGTAAACAGAGAGAAGTATATCGGAAGTGAAGAAAATTGGGAACGTGCCGAGCGCGCAATCATCGAGGCTTGTGAAGAAAAAGGTCTCCCCGCTGTCATAGAATATGGCGAAGCTGCATTCTATGGTCCCAAGTTGGACTTTATGGTCAAAGATGCATTGGGTCGTCGTTGGCAGTTGGGAACCATTCAGGTGGATTACAACCTGCCCGAACGATTCGATTTGGAATACACCGGTGAAGACAACAAAAAACATCGTCCTGTGATGATCCACCGAGCACCATTCGGTTCGATGGAGCGCTTCGTTGCTGTACTCATAGAGCACACGGCAGGCAAATTTCCGCTATGGCTCACGCCCGATCAGGTTGTTGTACTGCCGGTAAGCGAACGCTTCAACGAGTATGCTCACCGTGTAGCTAAAGAGTTGAACCAGCGAGATATTCGCGTACAAGTGGACGACAGGAACGAAAAGGTCGGACGAAAGATACGGGACAACGAATTGAAACGTATTCCGTATATGCTCATCGTAGGCGAAAACGAAAGCCGGGAAGAAGAGGTATCAGTACGCAAACAAGGCGAAGGAGATATGGGTATTATGAAAATTACTACCTTTGCCGAGCTTATCGAGAAAGAAGTCGATGATATGATTAGTGCCTGGCGCAAAGATTATCAAAAC","6.20","-8.85","75460","MIKITFPDGNFREYEAGITGWDIAGSISPRLQQDVLAAGVNGQVWDLHRQINEDAEVKLFKWDDAEGKHAFWHSSAHLMAEALEELYPGIKFGIGPAIENGFYYDVDPGEGISIKDADLPAIEKRMQDLAARKETIIRRDIAKADALRMFGDKDDQYKVELISELADGTITTYTQGGFTDLCRGPHLPNTGYIKAIKLLSVAGAYWRGDEKRKQLTRIYGISFPKKKMLDEYLELLEEAKKRDHRKIGKELELFAFSQNVGAGLPLWLPRGTQLRLRLEDFLKQIQKHFGYQQVITPHIGNKNLYITSGHYAKYGQDSFRPINTPQEGEEFMLKPMNCPHHCEIFKITPHSYRDLPIRLAEFGTVYRYEQSGELHGLTRVRGFTQDDAHLFCRPDQLKEEFCKVMDIIFIIFKALDFKNFEAQISLRDKVNREKYIGSEENWERAERAIIEACEEKGLPAVIEYGEAAFYGPKLDFMVKDALGRRWQLGTIQVDYNLPERFDLEYTGEDNKKHRPVMIHRAPFGSMERFVAVLIEHTAGKFPLWLTPDQVVVLPVSERFNEYAHRVAKELNQRDIRVQVDDRNEKVGRKIRDNELKRIPYMLIVGENESREEEVSVRKQGEGDMGIMKITTFAELIEKEVDDMISAWRKDYQN","1054196 1052238","Threonyl-tRNA synthetase is believed to be acytoplasmically located homodimer that belongs toclass-II aminoacyl-tRNA synthetases. ThrS is able toautoregulate its own translation by binding to itsmRNA and repressing translation. Reaction: ATP + l-threonine + tRNA(thr) = AMP +pyrophosphate + l-threonyl-tRNA(thr). TIGR ID: PG0992","threonyl-tRNA synthetase","Cytoplasm","This sequence is similar to CT581 and to BT0422.Numerous significant hits in gapped BLAST, e.g.; residues 3-638 are 51% similar to gb|AAF11630.1|AE002044_3 threonyl-tRNA synthetase of Deinococcus radiodurans, residues 4-634 are 47% similar to emb|CAB65483.1| threonyl-tRNA synthetase of Thermus thermophilus, residues 1-634 are 46% similar to gb|AAC00362.1| threonine tRNA synthetase of Bacillus subtilis.","
InterPro
IPR002314
Domain
tRNA synthetase, class II (G, H, P and S)
PF00587\"[274-446]TtRNA-synt_2b
InterPro
IPR002320
Family
Threonyl-tRNA synthetase, class IIa
PR01047\"[333-361]T\"[366-389]T\"[472-500]T\"[515-528]T\"[542-554]TTRNASYNTHTHR
TIGR00418\"[72-640]TthrS
InterPro
IPR004095
Domain
TGS
PF02824\"[2-61]TTGS
InterPro
IPR004154
Domain
Anticodon-binding
G3DSA:3.40.50.800\"[539-650]TAnticodon_bd
PF03129\"[549-639]THGTP_anticodon
SSF52954\"[535-646]TAnticodon_bd
InterPro
IPR006195
Domain
Aminoacyl-transfer RNA synthetase, class II
PS50862\"[271-554]TAA_TRNA_LIGASE_II
InterPro
IPR012675
Domain
Beta-grasp fold, ferredoxin-type
G3DSA:3.10.20.30\"[1-64]TFerredoxin_fold
InterPro
IPR012676
Domain
TGS-like
SSF81271\"[2-62]TTGS-like
InterPro
IPR012947
Domain
Threonyl/alanyl tRNA synthetase, SAD
PF07973\"[170-219]TtRNA_SAD
noIPR
unintegrated
unintegrated
G3DSA:3.30.930.10\"[242-538]TG3DSA:3.30.930.10
G3DSA:3.30.980.10\"[65-233]TG3DSA:3.30.980.10
PTHR11451\"[176-651]TPTHR11451
PTHR11451:SF5\"[176-651]TPTHR11451:SF5
SSF55186\"[63-241]TSSF55186
SSF55681\"[242-540]TSSF55681


","BeTs to 17 clades of COG0441COG name: Threonyl-tRNA synthetaseFunctional Class: JThe phylogenetic pattern of COG0441 is amtkYqVceBrhujgpoLinxNumber of proteins in this genome belonging to this COG is 1","***** PR01047 (Threonyl-tRNA synthetase signature) with a combined E-value of 9e-82. PR01047A 333-361 PR01047B 366-389 PR01047C 472-500 PR01047D 515-528 PR01047E 542-554","Residues 526-638 are 38% similar to a (SYNTHETASE AMINOACYL-TRNA LIGASE PROTEIN BIOSYNTHESIS) protein domain (PD000606) which is seen in O67583_AQUAE.Residues 73-208 are 48% similar to a (SYNTHETASE AMINOACYL-TRNA PROTEIN LIGASE BIOSYNTHESIS) protein domain (PD001534) which is seen in SYT1_BACSU.Residues 465-521 are 77% similar to a (SYNTHETASE AMINOACYL-TRNA THREONYL-TRNA LIGASE) protein domain (PD002782) which is seen in SYT_SYNY3.Residues 1-59 are 50% similar to a (SYNTHETASE THREONYL-TRNA AMINOACYL-TRNA LIGASE) protein domain (PD006784) which is seen in SYT1_BACSU.Residues 244-438 are 59% similar to a (SYNTHETASE AMINOACYL-TRNA LIGASE PROTEIN BIOSYNTHESIS) protein domain (PD000380) which is seen in SYT_SYNY3.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Tue Dec 2 16:22:44 2003","Wed Mar 22 15:29:10 MST 2000","Tue Dec 2 16:22:44 2003","Thu Mar 15 10:15:56 MST 2001","Thu Mar 15 10:15:56 MST 2001","Thu Mar 15 10:15:56 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG0888 shows weak similarity to PG0861, a prolyl-tRNA synthetase and PG1521, uridine kinase.","Thu Mar 15 10:15:56 MST 2001","Thu Mar 15 10:15:56 MST 2001","-64% similar to PDB:1NYQ Structure of Staphylococcus aureus threonyl-tRNA synthetase complexed with an analogue of threonyl adenylate (E_value = 6.9E_161);-64% similar to PDB:1NYR Structure of Staphylococcus aureus threonyl-tRNA synthetase complexed with ATP (E_value = 6.9E_161);-59% similar to PDB:1QF6 STRUCTURE OF E. COLI THREONYL-TRNA SYNTHETASE COMPLEXED WITH ITS COGNATE TRNA (E_value = 5.1E_140);-59% similar to PDB:1EVK CRYSTAL STRUCTURE OF A TRUNCATED FORM OF THREONYL-TRNA SYNTHETASE WITH THE LIGAND THREONINE (E_value = 1.2E_85);-59% similar to PDB:1EVL CRYSTAL STRUCTURE OF A TRUNCATED FORM OF THREONYL-TRNA SYNTHETASE WITH A THREONYL ADENYLATE ANALOG (E_value = 1.2E_85);","","","Residues 1 to 61 (E-value = 1.3e-09) place PG0888 in the TGS family which is described as TGS domain (PF02824)Residues 263 to 419 (E-value = 1.2e-49) place PG0888 in the tRNA-synt_2b family which is described as tRNA synthetase class II core domain (G, H, P, S and T) (PF00587)Residues 549 to 639 (E-value = 7.6e-25) place PG0888 in the HGTP_anticodon family which is described as Anticodon binding domain (PF03129)","Tue Dec 2 16:22:44 2003","34540737","","","","","","1","","","PG0992" "PG0889","1054882","1054580","303","ATGGAAAATATCTTTCAAATTCTTTCAACCGTCCCGGATCATCGTCGAGGCAATCATTTGATCTATCCCATTGATTATCTTTTACTTATTTCATTCTCCGGGATTATGTCCGTTTTTACCACGTGGAGCGACTTCGAGCTCTATGCCCAACTACATGAAGAAGACCTTAAAATGCTGTATAAAAGATTGGCAAAGAGAGAGCTGATGAATTATACGCCCTCACACGATACTTTCAGTTACTGTTTTCGCGGTTTGGATCCGAAGGCTTTTCAAGAGGCCTTCAAGTCTTGGCTGCTCACTGTT","6.50","-1.10","12028","MENIFQILSTVPDHRRGNHLIYPIDYLLLISFSGIMSVFTTWSDFELYAQLHEEDLKMLYKRLAKRELMNYTPSHDTFSYCFRGLDPKAFQEAFKSWLLTV","1054882 1054580","Member of IS5 family of elements. Corresponds to the N-terminal domains of full-length ISPg2 elements such as PG1522.TIGR ID: PG0993","ISPg2 fragment (PGIS2-related fragment)","Cytoplasm","This sequence is 43% similar to a previously sequenced ISPg2 transposase of P.gingivalis in Genbank, AAC45368.Few significant hits in gapped BLAST, e.g.; residues 1-99 are 24% similar to gb|AAC73800.1| putative DNA ligase of Escherichia coli K12, residues 2-98 are 25% similar to emb|CAB82577.1| hypothetical protein of Klebsiella pneumoniae.","
noIPR
unintegrated
unintegrated
tmhmm\"[21-41]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 3-98 are 43% similar to a (PUTATIVE TRANSPOSASE) protein domain (PD103322) which is seen in P95492_PORGI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Fri Feb 16 16:09:26 MST 2001","Fri Feb 16 16:09:26 MST 2001","Thu Feb 8 13:02:44 MST 2001","Wed Jan 17 12:43:42 MST 2001","","Fri Feb 16 16:09:26 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG0889 is equivalent to the N-terminal domains of full-length ISPg2 elements such as PG1522. See also PG1905, PG1522, PG1185, PG0775, PG0249, PG1058, all predicted ISPG2 sequences or sequence fragments.","Fri Feb 16 16:09:26 MST 2001","Fri Feb 16 16:09:26 MST 2001","-47% similar to PDB:2GMH Structure of Porcine Electron Transfer Flavoprotein-Ubiquinone Oxidoreductase in Complexed with Ubiquinone (E_value = );-47% similar to PDB:2GMJ Structure of Porcine Electron Transfer Flavoprotein-Ubiquinone Oxidoreductase (E_value = );-42% similar to PDB:2NR8 Crystal structure of the human KIF9 motor domain in complex with ADP (E_value = );-55% similar to PDB:1BVZ ALPHA-AMYLASE II (TVAII) FROM THERMOACTINOMYCES VULGARIS R-47 (E_value = );-55% similar to PDB:1G1Y CRYSTAL STRUCTURE OF ALPHA-AMYLASE II (TVAII) FROM THERMOACTINOMYCES VULGARIS R-47 AND BETA-CYCLODEXTRIN COMPLEX (E_value = );","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","PG0993" "PG0890","1055734","1056639","906","ATGCAGAAAGACGTTGTTTTGATTACCGGTGCAAATGGGATGGTTGCACGGGCACTGTCGGAAGAACTTGTGCGAAACGGTTACTCCATACGCATTTTGACGCGCCACAAACGAAACGAAAACGAATATGAATGGGACGTTCCCAAACGGCGAATCGAGGTCGAAGCACTGCAAGGAGTGAGGCATATCATCCATCTGGCAGGAGCCGGAGTTGCCGATAAGCCATGGACGAGTGAGCGCAAAGAGGTCATCCGTTCGAGCAGGGTCGATTCGGCAAGGCTCCTATTAGAGACCCTGAAAGCCAATGACATTCGGATAGCTACTTTCATTTCGGCATCGGCCGTGGGGTTCTACGGGACGCTAACCGGCGAAAACATTTTCGCCGAAAACGATAAAAATGGCGGCGACTTTCTGAGCCATGTGTGTAGCGAATGGGAGCGTGTGGATCAAGCTTTCTCTCAAGAGGGAGTGTCAGGGCGGACTGTCATTATGCGAAACGGTATTATACTGGCTCCTCAGGGCGGTGCTTTGGTTAAGATGGTGCGTCCCGTCAGATGGTTTGTAGGTGCTCCGTTAGGAAGTGGGAAGCAGTATATGCCATGGATCCATATCAGCGATGTATGCGGAATTATCTTGCATGCTCTTCGCAATCCGACTGTATCCGGTATTTATAATGTGGTAGCACCAGAGCATGTGCGTAATGCAGAGTTCATACGCGCTATTGGGTGTGCCATCGGGCGACCTGTCTTCTTTCCCTCCATACCCAAATGGGTTATTTGTCGCGTATTCGGCGAGCGGGCTTCCATTCTACTGGAAGGAAGTAGGGTATCGGCCGAAAAAATCATCTCTTCGGGCTATCGTTTCAAGTATGTCACCCTTGAAAAAGCACTGGACAATCTCTTACGA","10.20","10.51","33610","MQKDVVLITGANGMVARALSEELVRNGYSIRILTRHKRNENEYEWDVPKRRIEVEALQGVRHIIHLAGAGVADKPWTSERKEVIRSSRVDSARLLLETLKANDIRIATFISASAVGFYGTLTGENIFAENDKNGGDFLSHVCSEWERVDQAFSQEGVSGRTVIMRNGIILAPQGGALVKMVRPVRWFVGAPLGSGKQYMPWIHISDVCGIILHALRNPTVSGIYNVVAPEHVRNAEFIRAIGCAIGRPVFFPSIPKWVICRVFGERASILLEGSRVSAEKIISSGYRFKYVTLEKALDNLLR","1055692 1056639","TIGR ID: PG0996","conserved hypothetical protein","Cytoplasm","Numerous significant hits in gapped BLAST, e.g.; residues 6-301 are 35% similar to gb|AAG08043.1|AE004879_9 conserved hypothetical protein of Pseudomonas aeruginosa, residues 6-302 are 34% similar to gb|AAC75364.1| putative sugar nucleotide epimerase of Escherichia coli K12, residues 6-302 are 32% similar to gb|AAG41477.1|AF326895_1 unknown protein of Arabidopsis thaliana.","
InterPro
IPR001509
Family
NAD-dependent epimerase/dehydratase
PF01370\"[6-227]TEpimerase
InterPro
IPR010099
Family
Conserved hypothetical protein, YfcH
PTHR11092\"[8-301]TCHP1777_YfcH
TIGR01777\"[6-297]TyfcH
InterPro
IPR013549
Domain
Domain of unknown function DUF1731
PF08338\"[254-301]TDUF1731
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.720\"[6-247]TG3DSA:3.40.50.720
SSF51735\"[5-302]TSSF51735


","BeTs to 4 clades of COG1090COG name: Predicted nucleoside-diphosphate sugar epimerases (SulA family)Functional Class: RThe phylogenetic pattern of COG1090 is -------cebrh---------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 116-301 are 38% similar to a (PROTEIN CELL DIVISION INHIBITOR) protein domain (PD011289) which is seen in P73467_SYNY3.Residues 6-114 are 29% similar to a (PROTEIN CELL DIVISION INHIBITOR) protein domain (PD009709) which is seen in YM16_MYCTU.Residues 6-302 are 34% similar to a (PROTEIN OXIDOREDUCTASE DEHYDROGENASE REDUCTASE NAD NADP) protein domain (PD000038) which is seen in P77775_ECOLI.","","Wed Jun 13 16:51:24 MDT 2001","","Wed Jun 13 16:51:24 MDT 2001","Wed Jun 13 16:51:24 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Jun 13 16:51:24 MDT 2001","Wed Jun 13 16:51:24 MDT 2001","","","Wed Jan 17 12:39:42 MST 2001","Mon Jun 18 14:03:40 MDT 2001","Wed Jun 13 16:51:24 MDT 2001","","Mon Jun 18 13:59:19 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Jun 13 16:51:24 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jun 18 13:59:19 MDT 2001","34540740","","","","","","1","","","PG0996" "PG0891","1056808","1057071","264","ATGCAGGTTGCTTCCCGAGTAAAGGCCCGACGGTTGGAGATGAATCTGACACAAGAGGGAATCGCTTTACGGGCAGGAATGAAGTTGCCTACCTATCGCAGATTCGAGCGTACGGGCGAAATTTCTTTTAGAGGCTTATTGCAAATCGGATTCGCTCTGAATGCCTTGCAGGACTTTGCGCTGCTCTTTGACCAAAGGCTGTATCAGACACTCGACGAAGTGCTGGCAGAACAGCAGCCCAAGCGCAAGAGAGGTAGCAAAAAA","11.40","7.99","10196","MQVASRVKARRLEMNLTQEGIALRAGMKLPTYRRFERTGEISFRGLLQIGFALNALQDFALLFDQRLYQTLDEVLAEQQPKRKRGSKK","1056751 1057071","TIGR ID: PG0997","hypothetical protein","Cytoplasm, Periplasm","No significant hits in gapped BLAST.","
InterPro
IPR010982
Domain
Lambda repressor-like, DNA-binding
SSF47413\"[1-61]TLambda_like_DNA


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Wed Jun 13 16:48:19 MDT 2001","","Wed Jun 13 16:48:19 MDT 2001","Wed Jun 13 16:48:19 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Jun 13 16:48:19 MDT 2001","Wed Jun 13 16:48:19 MDT 2001","","","Wed Jan 17 12:34:34 MST 2001","Wed Jan 17 12:34:34 MST 2001","Wed Jan 17 12:34:34 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Jun 13 16:48:19 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jun 18 14:05:20 MDT 2001","34540741","","","","","","1","","","PG0997" "PG0892","1057168","1057710","543","GTGATGACCGATCTAGAAAAGCTTATGTTGCTTCTTCCTATTATGTTCATGCTTCATGAATATGAAGAGGTAGTTATGTTCAAGCAATGGATATTTCAGAATAsAGAGAACCTGAAAAGACATTTTCCTAAAGTAGAAGCCTTCATTACAGAGCGGGGGCTATTCGATTACTCAACATCGACTTTTGCCGTTGGTACAGCTCACGAATTTATTTTGCTTTCCGTTGTTTCTTTCTTTGCCGTATGGCAAGGTGCATATCAATGGTGGTTTGCTGTATTGATGGGACATTCTATCCATTTGTTTATACATCTTGCACAATGGATTATATACCGTAAATATATTCCGGTAATTGTTACGACTCTATTGACTTTGCCCTATTGTATATATGCCTTCGTGAAATTTACAGACACTACTTCCTTGTCTCCCTTACAAATGGTTTTATGGACAGTCATCGGTATCACTCTTGCTGCTCTTAGTCTACTTTCAGCATTTTTCCTCATGTCAAAATTTTATAGATGGGAGGTCAAACGAGGGATTTTTTTC","8.40","2.38","46461","VMTDLEKLMLLLPIMFMLHEYEEVVMFKQWIFQNXENLKRHFPKVEAFITERGLFDYSTSTFAVGTAHEFILLSVVSFFAVWQGAYQWWFAVLMGHSIHLFIHLAQWIIYRKYIPVIVTTLLTLPYCIYAFVKFTDTTSLSPLQMVLWTVIGITLAALSLLSAFFLMSKFYRWEVKRGIFF","1057168 1057710","TIGR ID: PG0999","hypothetical protein","Inner membrane, Cytoplasm","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-21]?signal-peptide
tmhmm\"[57-79]?\"[85-105]?\"[114-132]?\"[146-166]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","Tue Feb 6 13:27:38 MST 2001","Tue Feb 6 13:27:38 MST 2001","","","","","Wed Jan 17 12:29:26 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540743","","","","","","1","","","PG0999" "PG0893","1057736","1058365","630","ATGGAGACCGACAATGTATTGAAACGGATATTGGAAATCGAACATGGCTTCGTGCATATACTCGATGCTGCAAAAGAGATTTTGTCTTCCTCTTCGGAAGAAAGATCTTTTGCCATCGCTTCCGAGTTTTTCGATCACGAAGCCTATCAGCCACGAATGTTGGCGACTGCAATCTTAGGACATCTGGCCGGTACGAATAGTGAAGCACTCCTCTTTCTGAAAGATCGGGTGAGCTTGGATATGAATTGGCGTGTGCAGGAGATGCTTGCCAAAGCTTTCGATACGTTTTGTAAGGAGCAGGGGTACGAGAAGTCCCTGCCTGTCATCAGGGAATGGCTCGATAGCGACAATGCGAATGTGGTCAGGGCCGTAACGGAGGGATTGAGGATTTGGACAAGTCGCCCATTCTTCAAAGAGAATCCATGTCTTGCTATCGAATGGCTCAGTCGGCATAGGGGGCACGAAAGCGAATACGTGCGCAAGTCTGTCGGCAACGCACTGAAAGACATCAGCAAGAAGCACAAAGAATCGGTCGCAGAAGAGCTAAAGAAATGGGATTTGTCCGATCCTTTGGTCTTGTTCACTTACAAACATGCTTCCAAGCATCCGGATAAAGACATTAAAAAACAG","6.80","-0.92","24241","METDNVLKRILEIEHGFVHILDAAKEILSSSSEERSFAIASEFFDHEAYQPRMLATAILGHLAGTNSEALLFLKDRVSLDMNWRVQEMLAKAFDTFCKEQGYEKSLPVIREWLDSDNANVVRAVTEGLRIWTSRPFFKENPCLAIEWLSRHRGHESEYVRKSVGNALKDISKKHKESVAEELKKWDLSDPLVLFTYKHASKHPDKDIKKQ","1057736 1058365","TIGR ID: PG1000","hypothetical protein","Cytoplasm","No significant hits in gapped BLAST.","
InterPro
IPR001789
Domain
Response regulator receiver
PD000039\"[64-139]TResponse_reg
noIPR
unintegrated
unintegrated
SSF48371\"[44-170]TSSF48371


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Jan 17 12:25:17 MST 2001","Wed Jan 17 12:25:17 MST 2001","Wed Jan 17 12:25:17 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540744","","","","","","1","","","PG1000" "PG0894","1058372","1058905","534","ATGGCAAGAGCAACGACGAAACAGGATTTGATCATGGCTTCCAATGGGCAATTCGAGAAGCTGTGGGTACTTATTGACGGAATGAGCGATGATCTGCAGAATGCGACATTTGCCGACCAAATGGCTACAGCCGGCAAGGAAGCACATTGGGGTCGGGACAAAAACCTCCGCGATGTACTCGTGCATCTGTACGAGTGGCACCAACTCTTGCTGAATTGGATCAACTCCAACAGTAAGGGCGAACGCAAGCCTTTTCTGCCTGAACCCTATAACTGGAAGACTTATTCGGTGATGAACGTGGAGTTTTGGAAGAAACACCAACAGACGCCATTGGCAGAAGCAAAGGACAAATTGAAAGAAAGCCATCGACAAGTAATGGCATTGATCGAGACATTTTCGAACGATGAATTATTTGCCAAGGGAGTATTCGACTGGACGGATACTTCGACTCTCGGTGCATACTGCGTATCAGCCACTTCCAGTCATTACGACTGGGCGATGAAGAAAATAAAGCTACATATCAAGACCGGTAAG","8.40","2.63","20610","MARATTKQDLIMASNGQFEKLWVLIDGMSDDLQNATFADQMATAGKEAHWGRDKNLRDVLVHLYEWHQLLLNWINSNSKGERKPFLPEPYNWKTYSVMNVEFWKKHQQTPLAEAKDKLKESHRQVMALIETFSNDELFAKGVFDWTDTSTLGAYCVSATSSHYDWAMKKIKLHIKTGK","1058372 1058905","TIGR ID: PG1001","conserved hypothetical protein","Periplasm","One significant hits in gapped BLAST to unknown protein in E.coli with Evalue of 3e-06.","
InterPro
IPR012550
Family
Protein of unknown function DUF1706
PF08020\"[1-176]TDUF1706


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Jan 17 12:23:18 MST 2001","Wed Jan 17 12:23:18 MST 2001","Wed Jan 17 12:23:18 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540745","","","","","","1","","","PG1001" "PG0895","1058913","1059296","384","ATGCGAAGTTGTTTGTGTGCCAAATGCTCTTTCTTCTTGCAGTATTTTATTATGGGCAAAGTGGCAGTACAGATCTCTCCTAAAGAGGGTATTTTTCGCTCTTGTAACAGGGGCTTCTCACAGGTGAAGACAATGGAGCTTCCGGAATCATGGTTGAAAAAACGTATGAAGGATAGGGAACTCACCGCAGAAAATCAGACCGTTCGTACCTTGAGTGAAAAACGTGAGCAAAACGGATGTAAGCCGGTAGAAATCGTCAGCCGACTGACACAATCGCCAAGTATGGAAGTTGCCTCGTTGGTAAGTATCATTTCCGCATCTATCGGCTATCTCGTATCGATGGAAGAGCAGAACGAGAGAGGATGGGAACAGATTGTACGGGGA","9.00","4.76","14600","MRSCLCAKCSFFLQYFIMGKVAVQISPKEGIFRSCNRGFSQVKTMELPESWLKKRMKDRELTAENQTVRTLSEKREQNGCKPVEIVSRLTQSPSMEVASLVSIISASIGYLVSMEEQNERGWEQIVRG","1058913 1059296","TIGR ID: PG1002","hypothetical protein","Periplasm, Cytoplasm","No significant hits in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-22]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Jan 17 12:19:46 MST 2001","Wed Jan 17 12:19:46 MST 2001","Wed Jan 17 12:19:46 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540746","","","","","","1","","","PG1002" "PG0896","1059374","1060363","990","ATGAGCAAGATATTTGCACAAGACACAGACTGTTCGTTTCTGATCGAGCAGGCTGTCAAAGCTCCTTCAGGGCATAATACGCAACCATGGACATTCAGGATTAAAGAGACGGGAATCGACATTCTGCCCGATTTTACAAAAACGCTGCCCGTAGTCGATCCTGATAATCGAGAGCTATTTGTTTCACTTGGATGCGCTACGGAGAATCTTTGTGTAGCGGCAGCCCATAAAGGATACGAGACGATGGTCTCTATCGCAGAAAACGGCACGATCCACATCGAACTTACCAAGCAGGATTCCGATACTCCATCTCCTCTGTTTCCTCATATATCCGTAAGGCAGACGAACAGAAGTGTCTATGATGGAAATACTATTCCTGTGAACGACATTGTCGCTTTGGGAGAAAAGAGCGATATGGAACCTTGTGTCGGAGCCCATTTCTTCAAGAATGGCACACGGGAGTTCGACGCTATTTCGGAAATGGTTTGTGAGGGCAACAGCATACAAATGCGAGACAAAAAGTTCAAAGAAGAATTGCAGCAATGGATGCGCTATAACAAGAAGCATCAAGATGCAACGAGAGACGGACTCAGCTATGCCGTATTCGGTGCACCCAATCTGTCTCGCTTCATTGCAAAGGCCATTATCACCCGACTCATTAATGAGAAGTCACAGAATAGAAATGATAGAAGAAAGATAGCCTCCTCTTCTCATTTTGTTTTGTTTACCACTTCGAACAATACGGTGGTGCAATGGATAAAATTGGGGAGAGCATTGGAACATATCCTGCTCAAGGCTACAGGTATGGGTATTTCGCATGCTTATATGAACCAGCCCAATGAGGTACAGGGCCTTTCGGGAAAAATGGCAGAAATACTCGGCATCGAAGACGAATATCCTACGGTTCTGATACGATTGGGATATGGGAGTAAGATGCCGTATTCGTTGAGAAGAAGTGTCCAATCCTGCATTATCCCTAATTCCTTCGAT","7.20","0.90","36982","MSKIFAQDTDCSFLIEQAVKAPSGHNTQPWTFRIKETGIDILPDFTKTLPVVDPDNRELFVSLGCATENLCVAAAHKGYETMVSIAENGTIHIELTKQDSDTPSPLFPHISVRQTNRSVYDGNTIPVNDIVALGEKSDMEPCVGAHFFKNGTREFDAISEMVCEGNSIQMRDKKFKEELQQWMRYNKKHQDATRDGLSYAVFGAPNLSRFIAKAIITRLINEKSQNRNDRRKIASSSHFVLFTTSNNTVVQWIKLGRALEHILLKATGMGISHAYMNQPNEVQGLSGKMAEILGIEDEYPTVLIRLGYGSKMPYSLRRSVQSCIIPNSFD","1059374 1060363","TIGR ID: PG1003","conserved hypothetical protein","Cytoplasm","Three significant hits in gapped BLAST, e.g.; residues 14-309 are 26% similar to emb|CAB53439.1| hypothetical protein SCJ12.27c of Streptomyces coelicolor A3(2), residues 1-320 are 27% similar to emb|CAB53129.1| hypothetical protein SCJ1.11 of Streptomyces coelicolor A3(2), residues 18- 324 are 23% similar to emb|CAB06283.1| hypothetical protein Rv3131 of Mycobacterium tuberculosis.","
noIPR
unintegrated
unintegrated
SSF55469\"[14-82]T\"[106-320]TSSF55469


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 18-308 are 24% similar to a (PROTEIN RV1355C) protein domain (PD017948) which is seen in P95195_MYCTU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Jan 17 12:17:57 MST 2001","Wed Jan 17 12:17:57 MST 2001","Wed Jan 17 12:17:57 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540747","","","","","","1","","","PG1003" "PG0897","1062804","1060528","2277","ATGAAACTAAAAATCCTATTACTAACAATCCTGACATTAGGAGCAATGACTGTGCATGCACAAAAGATCACAGGCGACTGGAAAGGAATGCTCTCCATTCCGCAAGCCAACATGGAGCTGGAACTCATATTCCACATCACCGGAGAGGGTGCCGACCTCTCCACGACGATGGATGTACCTGCTCAGGGAGCAACCGGCATACCCGTAGAGAAGACCTCCTTTGCCGATGGCAAACTGACACTCTCCGCAGCTGCCCTTCAGTTCACATTCAAGGGCACCCTGTCCGGCAATACGATAGAAGGCAATGTAGAGCAGATGGGCTTCAGCCTGCCGCTTACGCTACAACGATTCGAATCCAAATTGCCCGGCAATACAGCCTTGCCTTCGACCGAAGAAGAGCTTAAGGCACTGGCAGCTTTGGACAAGGGCAACTACAAATACAAGGTAGAAGACTACTTTGCCAAACCCAAGGCTTCCGCTTTTCAGCTAAGCCCCAACGGCAAGTACCTCTCATACATGGAAAAGGACGATGCCGGCAAACGCCATGTCTATGTCAAGGAAATTGCCACCGGCACCGTCAAGCGTGCCATCGAAGAAAAGGACGAACTGATCAAAGGCTACGGATGGATCAACGACGAACGTCTCTTCTTTGTCATGGACAAAGGAGGGAATGAGAACTATCACCTCTTTGCTTCGAATATCGACGGCAGCAATACCCGCGATCTCACCCCCTTTGACGGAGTGAAGGCTTCGATCCTCAACATGCTCAAAGAGCAGAAGGACTACATGATCATATCCATGAACAAAAACAATCCGCAGATCTTCGAACCCTACAAACTGAATGTAGTAACAGGCGAGCTGACCCAGCTCTACGAGAATAAGGATGCGGCCAACCCCATTCAAGGTTACGAGTTCGACAAGGACGGCGAACTGCGTGGATACAGCCGCCTCGTAAACGGGATCGAATCCGAGTTGTACTACAAGGATTTGGCTACGGGCGAGTTCCGTCTGCTGAAGAAAACACACTGGGACGACACCTTCGGAGTCATCGCGTTCAACTATGCCTCCAAAAACAAAGACGAAGCCTATGTACTGACCAACCTGGACAGCGACAAGACTCGTATCGTACTCTACGACCTGAAGCAGAACAAGATCATCCGCGAGATCTTCGCCAACGAAGACTACGACGTCAGCGGCCTGCACCTCTCTCGTAAGAGAAACTACGAAATAGACCTCATGGCCTACGAAGGCGAGAAGTCCGTAGTCGTACCCGTAAGTGCCACCTACAAAGAGCTGCACAAGCTGATGGAAAAGGAATTCAAGGGCAAAGAATTCTCCGTGGTCGATTACGATGATGATGAGACCATCCTGCTTATCGCCGTACAAAGCGACAAGCTATACGGCACCTACTACCAGTTCGATACGCGCACCAAGAAGTTTACCCTCCTCTATGACCTGATGCCTCAGCTCAAGGAGGAAGATATGGCCGAGATGCGCCCCATCAAATTCAAGAGCCGCGACGGACTCACTATCCATGGCTTTATCACTCTGCCGAAAGCAGCCCTCGAAGGGAAGAAAGTACCCCTGATCGTCAATCCGCATGGAGGCCCCCAAGGCATACGCGACTCATGGGGCTTCAATCCCGAGACCCAGCTCTTCGCCAGCCGCGGATATGCCACCCTGCAAGTCAATTTCCGCATCTCAGGCGGATACGGCAAGGAATTCCTCCGTGCCGGATTCAAACAGATCGGTCGCAAAGCCATGGACGATGTGGAGGACGGTGTGCGCTATGCTATCAGCCAAGGTTGGGTGGATCCTGACAGGATCGCCATATACGGTGCCAGCCACGGTGGTTATGCCACGCTGATGGGTCTGGTGAAAACACCCGATCTCTATGCCTGCGGTGTGGATTACGTAGGTGTATCGAACATTTACACCTTCTTCGACTCCTTCCCAGAATATTGGAAGCCGTTTAAGGAAATGGTCAAGGAAATTTGGTACGACCTCGACAATCCGGAGGAAGCAGCTATCGCCAAGGAAGTGTCCCCCTTCTTCCAGATCGACAAGATCAATAAGCCACTGTTCGTCGTACAGGGAGCCAACGACCCGCGCGTGAATATCAACGAGTCCGATCAGATCGTAACGGCACTGCGTGCCCGCGGATTCGAAGTACCCTATATGGTGAAGTACAACGAAGGCCACGGATTCCATCGTGAAGAAAACTCCATGGAGCTATACCGTGCCATGCTCGGTTTCTTCGCCAAACACCTGAAGAAA","5.70","-10.82","85983","MKLKILLLTILTLGAMTVHAQKITGDWKGMLSIPQANMELELIFHITGEGADLSTTMDVPAQGATGIPVEKTSFADGKLTLSAAALQFTFKGTLSGNTIEGNVEQMGFSLPLTLQRFESKLPGNTALPSTEEELKALAALDKGNYKYKVEDYFAKPKASAFQLSPNGKYLSYMEKDDAGKRHVYVKEIATGTVKRAIEEKDELIKGYGWINDERLFFVMDKGGNENYHLFASNIDGSNTRDLTPFDGVKASILNMLKEQKDYMIISMNKNNPQIFEPYKLNVVTGELTQLYENKDAANPIQGYEFDKDGELRGYSRLVNGIESELYYKDLATGEFRLLKKTHWDDTFGVIAFNYASKNKDEAYVLTNLDSDKTRIVLYDLKQNKIIREIFANEDYDVSGLHLSRKRNYEIDLMAYEGEKSVVVPVSATYKELHKLMEKEFKGKEFSVVDYDDDETILLIAVQSDKLYGTYYQFDTRTKKFTLLYDLMPQLKEEDMAEMRPIKFKSRDGLTIHGFITLPKAALEGKKVPLIVNPHGGPQGIRDSWGFNPETQLFASRGYATLQVNFRISGGYGKEFLRAGFKQIGRKAMDDVEDGVRYAISQGWVDPDRIAIYGASHGGYATLMGLVKTPDLYACGVDYVGVSNIYTFFDSFPEYWKPFKEMVKEIWYDLDNPEEAAIAKEVSPFFQIDKINKPLFVVQGANDPRVNINESDQIVTALRARGFEVPYMVKYNEGHGFHREENSMELYRAMLGFFAKHLKK","1062804 1060528","TIGR ID: PG1004","probable acylamino-acid-releasing enzyme (dipeptidyl aminopeptidase)","Inner membrane, Cytoplasm, Periplasm","Numerous significant hits in gapped BLAST, e.g.; residues 150-744 are 29% similar to gb|AAA28026.1| homology with acylamino-acid-releasing enzyme; putative of Caenorhabditis elegans, residues 212-757 are 26% similar to dbj|BAA81456.1| hypothetical acylamino-acid-releasing enzyme of Aeropyrum pernix, residues 213-756 are 26% similar to gb|AAG18962.1| hypotehtical protein of Halobacterium sp. NRC-1.","
InterPro
IPR001375
Domain
Peptidase S9, prolyl oligopeptidase active site region
PF00326\"[544-759]TPeptidase_S9
noIPR
unintegrated
unintegrated
G3DSA:2.120.10.30\"[159-339]TG3DSA:2.120.10.30
G3DSA:3.40.50.1820\"[449-759]TG3DSA:3.40.50.1820
PTHR11731\"[194-757]TPTHR11731
PTHR11731:SF7\"[194-757]TPTHR11731:SF7
SSF53474\"[475-758]TSSF53474
SSF82171\"[143-485]TSSF82171


","BeTs to 4 clades of COG1506COG name: Dipeptidyl aminopeptidases/acylaminoacyl-peptidasesFunctional Class: EThe phylogenetic pattern of COG1506 is ---KY--c-b-----------Number of proteins in this genome belonging to this COG is 5","***** IPB002471 (Prolyl endopeptidase family serine active site) with a combined E-value of 9.2e-09. IPB002471B 590-620","Residues 613-735 are 43% similar to a (DIPEPTIDYL HYDROLASE PROTEIN IV PEPTIDASE PROTEASE) protein domain (PD003048) which is seen in YL31_CAEEL.Residues 150-528 are 22% similar to a (HYPOTHETICAL 86.0 KD PROTEIN) protein domain (PD140830) which is seen in YL31_CAEEL.Residues 490-611 are 35% similar to a (DIPEPTIDYL HYDROLASE IV PROTEIN PEPTIDASE PROTEASE) protein domain (PD001060) which is seen in O32120_BACSU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Mar 15 11:20:53 MST 2001","Wed Jan 17 12:13:18 MST 2001","Thu Mar 15 11:02:17 MST 2001","Thu Mar 15 11:02:17 MST 2001","Thu Mar 15 11:02:17 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 345-758 show 25% similarity to PG1528, a probable acylaminoacyl peptidase(alanyl dipeptidyl peptidase).Residues 150-759 show 20% similarity to PG0652, dipeptidyl peptidase IV. Residues 495-757 show 28% similarity to PG1196, dipeptidyl peptidase IV.Residues 504-757 show 25% similarity to PG0459, dipeptidyl peptidase IV.Residues 1-116 and 508-618 are weakly similar to PG1700.","Tue Apr 3 18:17:32 MDT 2001","Thu Mar 15 11:02:17 MST 2001","-42% similar to PDB:2GBC Native DPP-IV (CD26) from Rat (E_value = 1.0E_14);-42% similar to PDB:2GBF rat dpp-IV with alkynyl cyanopyrrolidine #1 (E_value = 1.0E_14);-42% similar to PDB:2GBG rat DPP-IV with alkynyl cyanopyrrolidine #2 (E_value = 1.0E_14);-42% similar to PDB:2GBI rat DPP-IV with xanthine inhibitor 4 (E_value = 1.0E_14);-42% similar to PDB:2I3Z rat DPP-IV with xanthine mimetic inhibitor #7 (E_value = 1.0E_14);","","","No significant hits to the Pfam 11.0 database","Thu Mar 15 11:02:17 MST 2001","34540748","","","","","","1","","","PG1004" "PG0898","1063855","1063118","738","ATGAGAAAAAAGATTTTCGCCGGCCTTGTCGGTCTCATAGGCACAGCACTGATAGCCGGTGCATGCAATATCAAATTCGACAACAAAGGCAAAACAATCACCCCCAAGGGCGATGCCATCACGGAGACTCGCAACATCGGTACATTCGACAAGATCGATGTCGAGGATGCATTCAACATCCACTACAAAGCCGGTATTCCGACTGACGGACTGACCATCGAGGCAGCACCCAATCTGATGGAATACATCGTCACGGAAGTGACGGATGGCGAACTTTCCATCCGACTCAAAGACCGCTATTCGATCCACGACGGGAAGATCGTCATTACGGTCGGTTCACCCACCCTCAAGGCAGTGGAGATGTCCGGTGCCTGTGCACTGAATGTGGAGGGAGAGCTTACCGGCGACCGGCTCGATCTGGACCTGTCGGGAGCTTCTTCTGTAAACCTCACCGGCCGTCTCAGAGCATTGGATATAAACGCTTCGGGAGCTTCCGGTATCAAACTGAAAGGCTCCGGCGAGGAGTTCACGCTCTCATGCAGCGGAGCTGTTGGTTGTGATGCATCCGATTTCATTACCCAACGTACCGAAGTATCCGTCAGTGGCACGGCATCGGTGAAGATCAATGCTTCCGAGTCTGTACGGGGAGATCTCTCCGGCATATCCTCTCTCGAAAATTACGGAGCCTCTTCGAATGATAAGGTAACGACCTCCGGCATGTCTTCCTACAAGCACAAA","5.20","-4.46","25674","MRKKIFAGLVGLIGTALIAGACNIKFDNKGKTITPKGDAITETRNIGTFDKIDVEDAFNIHYKAGIPTDGLTIEAAPNLMEYIVTEVTDGELSIRLKDRYSIHDGKIVITVGSPTLKAVEMSGACALNVEGELTGDRLDLDLSGASSVNLTGRLRALDINASGASGIKLKGSGEEFTLSCSGAVGCDASDFITQRTEVSVSGTASVKINASESVRGDLSGISSLENYGASSNDKVTTSGMSSYKHK","1063855 1063118","TIGR ID: PG1005","hypothetical protein","Outer membrane, Cytoplasm, Extracellular","No significant hits in gapped BLAST.","
noIPR
unintegrated
unintegrated
PS51257\"[1-22]TPROKAR_LIPOPROTEIN


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Jan 17 11:53:24 MST 2001","Wed Jan 17 11:53:24 MST 2001","Wed Jan 17 11:53:24 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 17-239 show 28% similarity to PG0385.Residues 41-243 show 21% similarity to PG0386.","Thu Mar 15 11:30:57 MST 2001","Thu Mar 15 11:30:57 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Mar 15 11:30:57 MST 2001","34540749","","","","","","1","","","PG1005" "PG0899","1066570","1063889","2682","TTGCGCGAGTCGCCGCCAATGGGGGCGGAGCGGAAGACTCCCTCTCTCCTACCCCTTCTTTTCGAGCATTCTGATAAAGGAAAGGGGTTCGACTACAGACTATTCACAAGCAATAAACTTAAAGTGTTTGCCACAGGTAACAGCCGATACATACACAATAAACCAACAATCATCCAAGCAATGAAACGAATCGTTTTATCATCTTTCCTGTTCGTTCTGTCCATACTTTCTTTGATGGCACAGAACAATACCCTCGATGTACACATATCCGGTACGATCAAGGATGCCTCCTCCGGCGAACCAGTGCCCTATGCCACTGTAAGCATCCGGCTGACAGGAGCAGATACCACACAGGTGTTCCGACAAGTGACTGACGGCAACGGCTACTTCGTCATAGGCCTGCCGGCAGCTCCCTCCTATCACCTGACAGCTTCGTTCGTAGGTATGAAAACCCATACCATGCAGATTAGTCGGGGAAATGGACAGCACGACATCAAATCCATCGACATTTCTCTCGAATCCGAGGACAAACAACTCTCCACCGTCACCGTATCGGCAGCACGACCACTGGTGAAGATGGAGATAGACCGCCTGTCCTATAATATGAAAGATGACCCCGCAGCCAAGACGAACAACCTGCTCGAAATGCTGCGCAACGTTCCTTTGGTAACGGTGGATGGTCAGGGCAATATCCAGGTGAAAGGATCTTCCAACTTCAAAATCCACCTCAATGGCAGGCCCTCGACCATGGTGAGCAGCAACCCGAAGGAGGTCTTTCGCTCCATTCCTGCCCATACGATCAAACGGGTGGAGGTCATCACCGATCCGGGTGTAAAGTACGATGCGGAAGGCACAAGTGCCATCCTGGACATCGTCACGGAAGAAGGTAAGAAGCTGGAAGGATATTCAGGTTCCATCACGGCCAGTGTCAGCAACAATCCCACAGCCAACGGTAGTATCTTTCTGACGGCAAAGTCCGGCAAAGTCGGGCTGACTACCAACTATAACTACTACGGTGGCAAAAACAAGGGCTCTCGCTACTTTACCGAACGTACTACATCCATGCTCCAAACGATAGAAGAAGGCAAAGGGCAAGAAACCTTTGGCGGACACTTCGGCAATGCCCTCCTCTCATTCGAGATAGATTCGCTCAATCTCTTTACGGTGGGCGGCAATGTACGCCTTTGGGAGATGACCACCGACCGGAACAGCGTAGAAAAAAGCTTTGCCGGCAGCAACCTCATGTCCTACATAGACAGAAAACTCAAAACACAGATGGATGCCGGATCATACGAGCTCAATGCCGACTATCAGCACAGCACTCGCCTGCCGGGCGAATTGCTCACCGTTTCCTACCGCTTCACTCACAATCCTAATAATAGCGAGACCTTCATTGACCAATGGAAGCGCGATCCGCTCAACACAGCTAATACGATCCAGTACGCCGGCCAGCACTCCAAATCCGATGCGGGCATGGACGAACATACGGCACAAGTGGACTATACACGTCCCTTAGGACAAGCACATTCTTTGGAAGCAGGGCTGAAGTACATCTATCGTCATGCCACGAGCGATCCTCTCTATGAGATACGACCATCCGAAGATGCTCCGTGGCAGCCCGGCTCTCTATATGCACAGAATCCGTCGAACGGAAAGTTCCGCCACGATCAATACATCGGAGCAGCCTATGCCGGCTACAACTATCGTAAGGATCAGTATTCTTTGCAAACCGGCCTCCGAGTGGAAAGCAGCAGGCTGAAAGCACTCTTTCCCGAAAACGCAGCAGCAGATTTCTCCCACAACTCGTTCGACTGGGTGCCACAGCTCACGCTCGGCTATACCCCCTCGCCCATGAAGCAGCTTAAGCTGGCCTATAACTTCCGAATCCAACGTCCTGCAATCGGCCAACTGAATCCCTACCGGCTACAGACCAACGATTATCAAGTACAGTATGGTAATCCCGACCTAAAGTCGGAGAAGCGTCACCACGTCGGTCTCTCCTATAATCAATACGGAGCCAAGGTCATGCTTACAGCATCGCTCGACTACGACTTCTGCAACAACGCCATCCAGAATTACACCTTCTCCGACCCGGCCAATCCCAATCTGTTCCACCAGACCTATGGCAATATCGGACGAGAGCATTCTTTCAGCTTGAATACCTATGCCATGTACACGCCGGCCGTATGGGTCAGGATTATGCTCAACGGAAATATCGATCGCACATTCCAAAAGAGCGAAGCACTCGGCATTGATGTCAATTCATGGTCCGGCATGGTATACTCAGGCCTGATGTTCACCCTGCCGAAGGATTGGACTGTGAATCTCTTCGGAGGTTATTATCATGGGGGAAGAAGCTACCAGACGAAGTATGATGGCAATGTATTCAACAATATCGGTATAGCCAAACAGCTTTTCGACAAAAAATTGAGAGTCTCGCTGAGCGCAAACAACATTCATGCGAAGTATTCGACATGGAAGAGCCGGACCATCGGCAATGGATTTACTATTTATTCGGAAAATGCCGGTATACAACGGAGTGTTTCCCTCAGCCTCACCTACAGCTTCGGTAAGATGAATACACAAGTGCGCAAGGTAGAGCGTACGATCGTCAACGACGACCTCAAGCAAACCTCATCCCAAGGACAGCAGGGTGGCGGACAAGGAAATCCTACCGGCAAT","10.00","19.54","99596","LRESPPMGAERKTPSLLPLLFEHSDKGKGFDYRLFTSNKLKVFATGNSRYIHNKPTIIQAMKRIVLSSFLFVLSILSLMAQNNTLDVHISGTIKDASSGEPVPYATVSIRLTGADTTQVFRQVTDGNGYFVIGLPAAPSYHLTASFVGMKTHTMQISRGNGQHDIKSIDISLESEDKQLSTVTVSAARPLVKMEIDRLSYNMKDDPAAKTNNLLEMLRNVPLVTVDGQGNIQVKGSSNFKIHLNGRPSTMVSSNPKEVFRSIPAHTIKRVEVITDPGVKYDAEGTSAILDIVTEEGKKLEGYSGSITASVSNNPTANGSIFLTAKSGKVGLTTNYNYYGGKNKGSRYFTERTTSMLQTIEEGKGQETFGGHFGNALLSFEIDSLNLFTVGGNVRLWEMTTDRNSVEKSFAGSNLMSYIDRKLKTQMDAGSYELNADYQHSTRLPGELLTVSYRFTHNPNNSETFIDQWKRDPLNTANTIQYAGQHSKSDAGMDEHTAQVDYTRPLGQAHSLEAGLKYIYRHATSDPLYEIRPSEDAPWQPGSLYAQNPSNGKFRHDQYIGAAYAGYNYRKDQYSLQTGLRVESSRLKALFPENAAADFSHNSFDWVPQLTLGYTPSPMKQLKLAYNFRIQRPAIGQLNPYRLQTNDYQVQYGNPDLKSEKRHHVGLSYNQYGAKVMLTASLDYDFCNNAIQNYTFSDPANPNLFHQTYGNIGREHSFSLNTYAMYTPAVWVRIMLNGNIDRTFQKSEALGIDVNSWSGMVYSGLMFTLPKDWTVNLFGGYYHGGRSYQTKYDGNVFNNIGIAKQLFDKKLRVSLSANNIHAKYSTWKSRTIGNGFTIYSENAGIQRSVSLSLTYSFGKMNTQVRKVERTIVNDDLKQTSSQGQQGGGQGNPTGN","1066570 1063889","TIGR ID: PG1006","conserved hypothetical protein; possible TonB-dependent receptor","Outer membrane, Extracellular","This sequence corresponds to gi:34397064 in Genbank.Its nearest neighbor in the NR database is gi:53711669 from Bacteroides fragilis YCH46.","
InterPro
IPR000531
Domain
TonB-dependent receptor
PF00593\"[606-856]TTonB_dep_Rec
InterPro
IPR012910
Domain
TonB-dependent receptor, plug
PF07715\"[189-288]TPlug
InterPro
IPR013209
Domain
LNS2, Lipin/Ned1/Smp2
SM00775\"[87-398]Tno description
noIPR
unintegrated
unintegrated
G3DSA:2.40.170.20\"[363-856]Tno description


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Mar 4 13:53:00 2005","Fri Mar 4 13:52:16 2005","Wed Jan 17 11:50:43 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 58-697 show 22% similarity to PG1496.Residues 61-350 show 26% similarity to PG1752, ton-B linked outer membrane receptor.Residues 87-275 show 26% similarity to PG1308.","Thu Mar 15 11:38:36 MST 2001","Fri Mar 4 13:52:16 2005","No significant hits to the PDB database (E-value < E-10).","","","Residues 186 to 856 (E-value = 1.9e-05) place PG0899 in the TonB_dep_Rec family which is described as TonB dependent receptor (PF00593)","Thu Mar 15 11:38:36 MST 2001","34540750","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Fri Mar 4 13:53:00 2005","","1","","","PG1006" "PG0900","1066981","1066613","369","ATGACTGCTATACTTCAAGCACAATCCATATTCCTCCAAATATCGGACACGATCAAGGACAGGATTCTCTCCGGCGAATATTCGGCCGACGAAAGGGTACCATCTGTCCGCGAATTGGCCGAACAGATGGAGGTCAATCCTAACACAGCGATGCGAGCTGTCGAACGCTTGCAAATGGAAGGTATGATCTATAACAAGCGCGGACTCGGCTACTTTGTCAGCCCCAACGCTCGCGAAGAGATCCTTGCCTCTCGACGCAAGAAATTCGTAGAAGAGGTGGTACCGGCCCTGCTCAGCGAGATGAAACTCCTCGGTATAGGCCTCGACACCCTCCAATCCGAATGGGACAAACAAACAGAGAATAATTCA","4.80","-4.00","13962","MTAILQAQSIFLQISDTIKDRILSGEYSADERVPSVRELAEQMEVNPNTAMRAVERLQMEGMIYNKRGLGYFVSPNAREEILASRRKKFVEEVVPALLSEMKLLGIGLDTLQSEWDKQTENNS","1066981 1066613 [Delay by 48 1162 49 8]","TIGR ID: PG1007","transcriptional regulator (GntR family)","Cytoplasm","Numerous significant hits found in gapped BLAST; e.g. residues 8-112 are 37% similar to dbj|BAB04370.1| transcriptional regulator (GntR family) of Bacillus halodurans, residues 7-106 are 36% similar to pir||B69822 transcription regulator GntR related protein yhcF of Bacillus subtilis, residues 10-118 are 33% similar to gb|AAC00247.1| transcription regulator of Bacillus subtilis.","
InterPro
IPR000524
Domain
Bacterial regulatory protein GntR, HTH
PR00035\"[33-47]T\"[47-63]THTHGNTR
PF00392\"[10-73]TGntR
SM00345\"[14-73]THTH_GNTR
PS50949\"[8-76]THTH_GNTR
InterPro
IPR011991
Domain
Winged helix repressor DNA-binding
G3DSA:1.10.10.10\"[3-76]TWing_hlx_DNA_bd
noIPR
unintegrated
unintegrated
PTHR11751\"[14-77]TPTHR11751
PTHR11751:SF1\"[14-77]TPTHR11751:SF1
SSF46785\"[7-80]TSSF46785


","BeTs to 3 clades of COG1725COG name: Predicted transcriptional regulatorsFunctional Class: KThe phylogenetic pattern of COG1725 is ------vc-Br----------Number of proteins in this genome belonging to this COG is 1","***** IPB000524 (Bacterial regulatory proteins, gntR family) with a combined E-value of 3.5e-12. IPB000524 33-73","Residues 10-77 are 39% similar to a (PROTEIN DNA-BINDING TRANSCRIPTIONAL REGULATOR) protein domain (PD000726) which is seen in YHCF_BACSU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Mon Jan 29 13:31:58 2001","Mon Jan 29 12:22:17 2001","Mon Jan 29 12:22:17 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","Residues 10 to 73 (E-value = 3.7e-12) place PG0900 in the GntR family which is described as Bacterial regulatory proteins, gntR family (PF00392)","","34540751","","","","","","1","","","PG1007" "PG0901","1067736","1066981","756","ATGACGACTACACAGAATCAACATAAAACTGCGCCCTCCTTTCTCGGGCGTATAGGACTGCTCCTTCGCATGGAGTGGTGTACACAGGGACGCAATACTCTATTTTTCCTGTTGGCACTACTGGGAGCACTCGTAGGTCTGACGATGCTATTGCACATAGGAGATGAGCTAAATCCTCTCTCGGTAAAGGATCGAACGCATTTTGACCTTTGGCCGTTGACCCTCGTTTGCGTAGCATTCTACGTATTCCGAATCGTACAAGGCCGGGTCAATAAGTCCGACACCGTCACCTATACCTTGATACCGGCTTCTGCCACAGCAAAGTTCGTCGTTATACTGATAGAGGGGATATTGGCACTGTTGGTAGCCGCTGTTGTAAACCAAATAGCCTATACGATAGAGGTACTCCTCTACCCCGCTGTCTTGGAAGCATCGTACTATGCGCCTTATATCTGGCAGACATCAGCAGGCTATGGGTGGTTTTCATCCGGATTCTTGGATCTCTACTGGCCGGGGGCCGTCATTCTGTTCAATGTACTGTCAGCAGGTATTTACTTCGCCGTTAGTGTCCGAAAACTCACCATGGCTACCGTGGCTTTCCTCCTGACTATGGGAGGTGAAACGATTTTGTTCGGCATACTGACATCCAATCTGAACCTGTACGGAGAAGATCTTTTCACTGCTCTTTTCTTCGGCAGTATCGGCTTGTGCCTATTCGTTTTATCCTTTATCAACCTTCAAAGACGACAACTGAAA","8.40","2.57","27960","MTTTQNQHKTAPSFLGRIGLLLRMEWCTQGRNTLFFLLALLGALVGLTMLLHIGDELNPLSVKDRTHFDLWPLTLVCVAFYVFRIVQGRVNKSDTVTYTLIPASATAKFVVILIEGILALLVAAVVNQIAYTIEVLLYPAVLEASYYAPYIWQTSAGYGWFSSGFLDLYWPGAVILFNVLSAGIYFAVSVRKLTMATVAFLLTMGGETILFGILTSNLNLYGEDLFTALFFGSIGLCLFVLSFINLQRRQLK","1067736 1066981 [Delay by 87 1163 88 2]","See ABC Transporters Analysis.TIGR ID: PG1008","hypothetical protein/possible ABC element with MSD domain","Inner membrane, Cytoplasm","No significant hits in gapped blast.","
noIPR
unintegrated
unintegrated
signalp\"[1-50]?signal-peptide
tmhmm\"[34-54]?\"[68-88]?\"[109-131]?\"[168-188]?\"[198-216]?\"[226-246]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Fri Jun 15 22:34:33 MDT 2001","Sat Jun 2 17:15:51 MDT 2001","Mon Jan 29 14:31:20 2001","Mon Jan 29 13:52:12 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 17-252 are 25% similar to PG0902, a hypothetical protein.","Thu Feb 8 16:41:01 2001","Sat Jun 2 17:15:51 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Sat Jun 2 17:15:51 MDT 2001","34540752","","","","","","1","","","PG1008" "PG0902","1068587","1067736","852","ATGACTGCATTAGTAAACAGCCGGCCGACAAATGTCTGGCAGCGCATCGGTCTCCTCTTTGCGATGGAATGGGGTACTCAGAAGAGAAACATTCTGGCCGTAACCGGCACACTCTGTGTAGTAGCCCTTGCTATTGCCATCCTTATATCTGTCAGTATCAATAGGCCTATCTCAGTGGAAGGATTGTCAGGATATATATTTGGTTTCAGTTCATTGTTTTTAATGACGACGATGGTCTATACTTACATCGCCATTCAAAGACAAATCAATCACTCCAAGACCATAGCCTATACAATCATACCGGCTTCTGTGGGAGAGAAATACGTGGTACTCCTGCTTTCTTTTCTGTTTCCGTTCATATGGACAATCGTTCTTTTGGCTATGGCCATATTGTTCTTGGGCATCTTGCTTCCAAGTACTTGGACAGCCCTATATGAGCTGTGGATGAATCTCTTCTTCATAGAACACATTGTATCGGTCGAAGAAGCAGAGTGGGCTGCAAAAATCGTTAGTTCCCTGAGATTCTATTTCATCTTATACAATATCGTGGGTGCTTTCTGTAGCATAGCCATGGCTCTTTGGTGCTGCATCAATGTACGAGGCACCACTCAGTCCATTCTTGCCCATATCGGACTCAATGCCGTGCTGGGTATTTTCTCCTCAGTAGTCGTATTGCCCGCAATGGTAGCACGCTTATCCTATATCGAATACAGCAATTCCATAAATGAGAGAGAAGTTATGGATGTTATTTTCTCCCCCGAGATATGGAGCTACCAGCTGATCACATTAGGATTGGCAGCGATACTATTCTATATCCTATCCTATTTCTCACTGAAAAAACGACAACTACGA","8.90","4.52","31987","MTALVNSRPTNVWQRIGLLFAMEWGTQKRNILAVTGTLCVVALAIAILISVSINRPISVEGLSGYIFGFSSLFLMTTMVYTYIAIQRQINHSKTIAYTIIPASVGEKYVVLLLSFLFPFIWTIVLLAMAILFLGILLPSTWTALYELWMNLFFIEHIVSVEEAEWAAKIVSSLRFYFILYNIVGAFCSIAMALWCCINVRGTTQSILAHIGLNAVLGIFSSVVVLPAMVARLSYIEYSNSINEREVMDVIFSPEIWSYQLITLGLAAILFYILSYFSLKKRQLR","1068587 1067736","See ABC Transporters Analysis.TIGR ID: PG1009","hypothetical protein/possible ABC element with MSD domain","Inner membrane, Cytoplasm","No significant hits in gapped blast.","
noIPR
unintegrated
unintegrated
signalp\"[1-46]?signal-peptide
tmhmm\"[31-51]?\"[65-85]?\"[108-142]?\"[175-195]?\"[210-230]?\"[255-275]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Fri Jun 15 22:33:52 MDT 2001","Sat Jun 2 17:09:19 MDT 2001","Mon Jan 29 14:23:12 2001","Mon Jan 29 14:23:12 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 15-284 are 25% similar to PG0901, a hypothetical protein.","Mon Apr 2 12:09:04 MDT 2001","Mon Apr 2 12:09:04 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Apr 2 12:09:04 MDT 2001","34540753","","","","","","1","","","PG1009" "PG0903","1069428","1068604","825","ATGATCAACGCAAAAAACATCAGATTCAGCTATCCACGACAAAGGTCGCTTTTCGAAAGCTTAAACCTCGACCTGCCGAAAGGGAGTATTACGGGACTGCTCGGACGAAACGGCGAGGGAAAGACTACACTACTCAAACTCCTATGCGGCCAATTACTCCGAAAGGATGGCAATCTGACGGTATTGACGGAAGACCCACGACACCGCTCGGTGAAGTTTTTGTCAAAAGTGTTCCTGCTGCAAGAGGAAGTGACCTGCCCGAATGTTTCGATCAGGGATTACTTCCGTATGATCACTCCTTTCTATCCCTCCTACTCACCCGAAGTAGCTCAGGAAATCATCATCGCTTTCGACCTGAACTGGGACATGAAGCTCGGCAAGGTATCGCAGGGACAGAAGAAAAAGGCTGTCATCGCATTGGCACTCTCTCTTCGTACACCGCTCTTGCTGATGGACGAACCGACCAACGGGCTGGATATTCCGAGCAAAAGTGCTTTCCGCCGCCTGATGGCACGATATATAACGGAGGAGCAAACGGTCATTATCAGTACACATCAGGTACGCGATCTGGAGCAGATCATCGATCGCATCGTAATGATGGACAAGAATGCCATCGTCTGCAACAGGTCCGTAGCCGAACTGAGCGAGCAATTTGCCTTCCGCCAAGTGGTACCGGGTGATAAGCCTATATATAAGGAAGGCTCTACAATGGGCGAAGTGGGTGTGTATGAGAATACCACCGGAGAAGAAACGCCCTTCTCCATGGAGCTGTTTTTCAATGGCATGATAGCCGAAAGAGAGGTTTTTAATCGCGTATTGAACCGC","8.70","3.35","31318","MINAKNIRFSYPRQRSLFESLNLDLPKGSITGLLGRNGEGKTTLLKLLCGQLLRKDGNLTVLTEDPRHRSVKFLSKVFLLQEEVTCPNVSIRDYFRMITPFYPSYSPEVAQEIIIAFDLNWDMKLGKVSQGQKKKAVIALALSLRTPLLLMDEPTNGLDIPSKSAFRRLMARYITEEQTVIISTHQVRDLEQIIDRIVMMDKNAIVCNRSVAELSEQFAFRQVVPGDKPIYKEGSTMGEVGVYENTTGEETPFSMELFFNGMIAEREVFNRVLNR","1069428 1068604","Related to antibiotic resistance? See ABC Transporters Analysis.TIGR ID: PG1010","ABC transporter ATP binding protein","Cytoplasm, Inner membrane","Numerous significant hits in gapped BLAST; e.g. residues 2-259 are 26% similar to gb|AAC66930.1| ABC transporter, ATP-binding protein of Borrelia burgdorferi, residues 1-217 are 26% similar to dbj|BAB04101.1| ABC transporter (ATP-binding protein) of Bacillus halodurans, residues 1-205 are 25% similar to dbj|BAB06367.1| ABC transporter (ATP-binding protein) of Bacillus halodurans.","
InterPro
IPR003439
Domain
ABC transporter related
PD000006\"[129-170]TABC_transporter
PF00005\"[28-203]TABC_tran
PS00211\"[128-142]?ABC_TRANSPORTER_1
PS50893\"[2-227]TABC_TRANSPORTER_2
InterPro
IPR003593
Domain
AAA+ ATPase, core
SM00382\"[27-216]TAAA
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[2-208]TG3DSA:3.40.50.300
PTHR19222\"[2-233]TPTHR19222
PTHR19222:SF4\"[2-233]TPTHR19222:SF4
SSF52540\"[1-217]TSSF52540


","BeTs to 8 clades of COG1131COG name: ABC-type multidrug transport system, ATPase componentFunctional Class: RThe phylogenetic pattern of COG1131 is AmTKy-VCEBR-uJ-pol--xNumber of proteins in this genome belonging to this COG is 3","***** IPB001617 (ABC transporters family) with a combined E-value of 5e-07. IPB001617A 33-48 IPB001617B 129-140","Residues 74-259 are 27% similar to a (ABC TRANSPORTER, ATP-BINDING PROTEIN) protein domain (PD109690) which is seen in O51520_BORBU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Fri Jun 15 22:32:59 MDT 2001","Mon Jan 29 15:16:55 2001","Mon Jan 29 15:03:13 2001","Thu Feb 8 17:02:32 2001","Fri May 4 15:46:07 MDT 2001","Fri May 4 15:46:07 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 14-256 are 26% similar to PG0584, a ferric enterobactin transport protein/iron(III) dicitrate transport system permease protein. Residues 2-255 are 23% similar to PG0844, an ABC transporter. Residues 13-222 are 23% similar to PG0566, a probable ABC transporter ATP-binding protein (basic). Similarities are also seen to PG0605, PG1533, PG1048, PG1929, PG1477, PG0921, PG1467, PG0233, PG1917, PG1211, PG1497, PG1084, PG1923, PG1049, PG0618, PG0254.","Thu Feb 8 17:02:32 2001","Fri May 4 15:46:07 MDT 2001","-48% similar to PDB:1VPL Crystal structure of ABC transporter ATP-binding protein (TM0544) from Thermotoga maritima at 2.10 A resolution (E_value = 6.8E_15);","","","Residues 28 to 203 (E-value = 2.5e-36) place PG0903 in the ABC_tran family which is described as ABC transporter (PF00005)","Fri May 4 15:46:07 MDT 2001","34540754","","","","","","1","","","PG1010" "PG0904","1071572","1070184","1389","ATGATCGAACAAATCGGAGCGGACTCTAAATCCGCCGAGAATAAACAAGAGCGCAAACTCTACATCGAGACCTATGGCTGCCAGATGAACGTAGCCGACAGTGAGGTGGTAGCGTCCGTAATGCAGATGGACGGCTACAACCTCACGGACAACGTGGATGAGGCGGATACGATCCTGGTCAATACCTGTTCGGTACGGGACAATGCCGAGCAGAAAGTGCTGAACCGGCTGGCATATTACCACTCGCTACGAAAGAAAAGACGGGCTTCTTCCCGTCTCGTTATCGGGGTATTGGGCTGCATGGCCGAGCGCGTCAAGGAGGAGTTGATCCGCGAACATCACGTGGATGTGGTGGCCGGCCCCGACTCGTATCTCGACCTGCCGAACCTCGTCGGAGCAGCAGAACAGGGAGAGAAAGCCATCAATGTGGAACTATCCACACAGGAAACGTATAAAGATGTGATGCCGCTCAAAATGGGTGGCGTACATATCAACGGATTCGTCTCCATCATGCGTGGGTGCAACAACTTCTGCAGCTACTGCATCGTACCCTACACACGAGGCCGAGAAAGAAGCCGCGAAATAGAAAGCATCCTCAACGAAGTGCGGGATCTGAAAGCCAAGAATTTCCGCGAGGTAACGCTGCTGGGGCAGAATGTAAACTCCTACCGATACGAACAAAACGGGCGGATCATCCGCTTCCCCGATCTGCTCGCAGCAGTGGCCGAAGCTGTGCCCGACATGCGCATACGCTTCACCTCTCCTCACCCCAAGGATATGGATGACGAGGCCATCGCCGTCATGGCACGATACCGCAATATCTGCAATCATATACACCTGCCGGCACAGAGCGGAAGCGACAAGATGCTCCGCGTCATGAAGCGCGGCTATACGCGCCGGTGGTATCTCGACAGGGTAGCAGCTATCCGCCGGGCCATACCGGACTGCGCCATCAGCAGCGACCTCTTCTGTGGCTTCCATTCGGAGACGGAGGAAGACTTCGAAGCCACTCTCAGCCTGATGGAAGAGGTGCGTTACGACTCTGCCTTCATGTTCAAGTATTCCGAACGGCCGGGTACTTATGCTGCTCGCCACCTCGCGGACGATGTGCCCGAAGAGGTAAAGCTATCCCGTCTGGATCGGATGATAGCCCTCCAGAATCGTCTGAGCGAGGAGAGCAACAAAAGAGACATAGGCAAGACTTTCGAAGTGCTGATAGAGGGCTTCAGCAAACGATCGCGCGAACAACTATTCGGCCGCACTCAGCAAAATAAGGTGGTGATTTTCGACAAGAACGGTCACCGCGTGGGACAATACATCTATGTACGAATCAAGGATGCTTCTTCGGCCACTCTCTTCGGCGAAGTGGTAGAAACCCCGACTTCGGAA","6.70","-1.96","52839","MIEQIGADSKSAENKQERKLYIETYGCQMNVADSEVVASVMQMDGYNLTDNVDEADTILVNTCSVRDNAEQKVLNRLAYYHSLRKKRRASSRLVIGVLGCMAERVKEELIREHHVDVVAGPDSYLDLPNLVGAAEQGEKAINVELSTQETYKDVMPLKMGGVHINGFVSIMRGCNNFCSYCIVPYTRGRERSREIESILNEVRDLKAKNFREVTLLGQNVNSYRYEQNGRIIRFPDLLAAVAEAVPDMRIRFTSPHPKDMDDEAIAVMARYRNICNHIHLPAQSGSDKMLRVMKRGYTRRWYLDRVAAIRRAIPDCAISSDLFCGFHSETEEDFEATLSLMEEVRYDSAFMFKYSERPGTYAARHLADDVPEEVKLSRLDRMIALQNRLSEESNKRDIGKTFEVLIEGFSKRSREQLFGRTQQNKVVIFDKNGHRVGQYIYVRIKDASSATLFGEVVETPTSE","1071572 1070184","TIGR ID: PG1012","conserved hypothetical protein","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 16-457 are 46% similar to dbj|BAB14760.1| unnamed protein product of Homo sapiens, residues 16-457 are 45% similar to gb|AAF60223.1|AF177477 1 CDK5 activator-binding protein of Rattus norvegicus, residues 16-457 are 45% similar to emb|CAC15883.1| novel protein (CGI-05) similar to rat CDK5 activator-binding protein of Homo sapiens.This sequence is similar to BT3195.","
InterPro
IPR002792
Domain
Deoxyribonuclease/rho motif-related TRAM
PF01938\"[395-458]TTRAM
PS50926\"[395-458]TTRAM
InterPro
IPR005839
Family
Protein of unknown function UPF0004
PTHR11918\"[18-458]TUPF0004
TIGR00089\"[19-454]TUPF0004
PS01278\"[168-188]TUPF0004
InterPro
IPR006463
Family
tRNA-i(6)A37 modification enzyme MiaB
TIGR01574\"[19-457]TmiaB-methiolase
InterPro
IPR006638
Domain
Elongator protein 3/MiaB/NifB
SM00729\"[164-384]TElp3
InterPro
IPR007197
Domain
Radical SAM
PF04055\"[168-341]TRadical_SAM
InterPro
IPR013848
Domain
Protein of unknown function UPF0004, N-terminal
PF00919\"[19-120]TUPF0004
noIPR
unintegrated
unintegrated
SSF102114\"[113-455]TSSF102114


","BeTs to 14 clades of COG0621COG name: Fe-S oxidoreductases family 1Functional Class: CThe phylogenetic pattern of COG0621 is amtk-QVCEBrhUJ---L-NXNumber of proteins in this genome belonging to this COG is 3","***** IPB001861 (Uncharacterized protein family UPF0004) with a combined E-value of 2.2e-98. IPB001861A 24-40 IPB001861B 55-65 IPB001861C 86-109 IPB001861D 166-211 IPB001861E 212-223 IPB001861F 237-266 IPB001861G 278-297 IPB001861H 318-355","Residues 19-457 are 42% similar to a (PROTEIN BIOSYNTHESIS OXIDASE COPROPORPHYRINOGEN III) protein domain (PD000690) which is seen in O23241_ARATH.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Mon Mar 12 11:46:18 MST 2001","Mon Dec 22 10:03:18 2003","Tue Jan 30 09:20:52 2001","Mon Mar 12 11:46:18 MST 2001","Mon Mar 12 11:46:18 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 16-458 are 27% similar to PG0138, a conserved hypothetical protein. Similarities are also seen to PG1942, aconserved hypothetical protein.","Mon Apr 2 12:15:32 MDT 2001","Mon Mar 12 11:46:18 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 19 to 120 (E-value = 9.7e-45) place PG0904 in the UPF0004 family which is described as Uncharacterized protein family UPF0004 (PF00919)Residues 168 to 341 (E-value = 4.5e-30) place PG0904 in the Radical_SAM family which is described as Radical SAM superfamily (PF04055)Residues 395 to 458 (E-value = 5.9e-13) place PG0904 in the TRAM family which is described as TRAM domain (PF01938)","Mon Dec 22 10:03:18 2003","34540755","","","","","","1","","","PG1012" "PG0905","1071876","1073369","1494","ATGGCTCTAAGATTTATCACTGCAGAAGAAGCAGCGGAGTTTGTGCATCACAACGACAATGTCGGCTTTAGCGGTTTTACCCCTGCAGGCAACCCTAAGGTAGTACCTGCGGCAATAGCCAAGCGAGCTATTGCAGCGCATGAAAAAGGCAATCCCTTCAAGATCGGTATGTTCACCGGTGCCAGTACCGGTGCTCGGTTGGACGGTGTCTTGGCACAGGCCGATGCTGTGAAGTTTCGTACTCCATATCAGTCCAATAAGGATCTGCGCAATCTTATCAACAATGGCAGCACTTCCTATTTCGATCTTCATCTCTCTACTTTGGCTCAGGATCTGCGCTATGGCTTTTACGGCAAGGTGGATGTGGCCATCATAGAGGTGGCAGACGTTACCGAAGACGGTAAGATCCTGCCTACTACAGGTGTAGGTATCCTGCCTACTATTTGCCGTCTGGCAGACCGAATCATCGTGGAGCTTAACGACAAGCACCCCAAAGAAATCATGGGTATGCACGACTTGTGCGAACCTCTCGATCCGCCTGCCCGTCGCGAGCTGCCTGTCTATACTCCTTCGGATCGTATCGGCAAGCCTTATGTACAGGTGGATCCGGCCAAGATAGTCGGTGTAGTGCGTACGAGCGAACCTAATGACGAGAGCGATTTTGCGCCCCTTGACCCTGTAACGCAGGCTATTGGGGACAATGTGGCTGCTTTCCTCGTGAGCGAAATGAAAGCCGGACGAATACCCAAAGATTTTCTTCCCCTGCAAAGCGGCGTAGGCAATGTGGCTAATGCCGTACTGGGAGCGTTGGGTGACAATCCCGATATTCCGGCTTTCAACATGTACACAGAGGTAATTCAGGATGCCGTTATCGCTCTGATGAAGAAAGGACGCATCAAGTTCGCCAGCGGATGTTCGCTCTCTGTGAGTCGCTCCGTGATACAGGACATCTACGCCAATCTGGATTTCTTCAAGGACAAGATCCTCCTTCGTCCGCAGGAATACTCCAACAATCCCGAGATCGTCCGCCGGTTAGGTGTTATCACCATCAATACGGCTCTCGAAGCGGATATTTTCGGCAATATCAACTCTACGCACGTTAGCGGTACGCGTATGATGAACGGTATCGGAGGTTCGGGCGACTTCACTCGCAACAGCTACGTCTCCATCTTCACTACACCGTCCGTTATGAAGGACGGCAAGATCAGTTCTTTCGTCCCGATGGTGGCGCACCACGATCATAGCGAGCACTCCGTGAAAGTCATCATTTCCGAATGGGGCGTTGCAGACTTGCGAGGCAAGAACCCACGTGAGCGTGCTCATGAGATCATCGACAAATGTGTGCATCCCGACTATCGTCCCCTCCTTCGTCAGTATCTGGAGCTTGGAGTCAAAGGACAAACACCCCAGAATCTGGACTGCTGCTTTGCCTTCCATCAGGAATTGGCCAAGAGCGGCGACATGCGCAATGTACGCTGGGAAGACTACATGAAG","6.60","-2.88","54665","MALRFITAEEAAEFVHHNDNVGFSGFTPAGNPKVVPAAIAKRAIAAHEKGNPFKIGMFTGASTGARLDGVLAQADAVKFRTPYQSNKDLRNLINNGSTSYFDLHLSTLAQDLRYGFYGKVDVAIIEVADVTEDGKILPTTGVGILPTICRLADRIIVELNDKHPKEIMGMHDLCEPLDPPARRELPVYTPSDRIGKPYVQVDPAKIVGVVRTSEPNDESDFAPLDPVTQAIGDNVAAFLVSEMKAGRIPKDFLPLQSGVGNVANAVLGALGDNPDIPAFNMYTEVIQDAVIALMKKGRIKFASGCSLSVSRSVIQDIYANLDFFKDKILLRPQEYSNNPEIVRRLGVITINTALEADIFGNINSTHVSGTRMMNGIGGSGDFTRNSYVSIFTTPSVMKDGKISSFVPMVAHHDHSEHSVKVIISEWGVADLRGKNPRERAHEIIDKCVHPDYRPLLRQYLELGVKGQTPQNLDCCFAFHQELAKSGDMRNVRWEDYMK","1071876 1073369","From gi:729048Forms succinyl-CoA from succinate and acetyl-CoA. It is efficiently transcribed only during growth on ethanol plus succinate.TIGR ID: PG1013","coenzyme A transferase","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 6-488 are 51% similar to gb|AAG58046.1|AE005522 4 putative coenzyme A transferase of Escherichia coli 0157:H7, residues 6-488 are 51% similar to gb|AAC75957.1| putative coenzyme A transferase of Escherichia coli K12, residues 4-489 are 48% similar to emb|CAA93155.1| Butyryl-CoA:Acetate Coenzyme A transferase of Thermoanaerobacterium thermosaccharolyticum.This sequence is similar to BT3193.","
InterPro
IPR003702
Family
Acetyl-CoA hydrolase/transferase
PTHR21432\"[1-481]TActCoA_hydro
PF02550\"[2-211]TAcetylCoA_hydro
noIPR
unintegrated
unintegrated
PTHR21432:SF10\"[1-481]TPTHR21432:SF10


","BeTs to 4 clades of COG0427COG name: Acetyl-CoA hydrolaseFunctional Class: CThe phylogenetic pattern of COG0427 is A---y--ce------------Number of proteins in this genome belonging to this COG is 3","No significant hit to the Blocks database.","Residues 4-194 are 44% similar to a (TRANSFERASE ACETYL-COA HYDROLASE) protein domain (PD014384) which is seen in Q59323_BBBBB.Residues 4-461 are 48% similar to a (TRANSFERASE PROTEIN A 4-HYDROXYBUTYRATE) protein domain (PD005956) which is seen in CAT1_CLOKL.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Mon Dec 22 10:01:46 2003","Tue Jun 12 12:01:51 MDT 2001","Mon Dec 22 10:01:46 2003","Tue Jan 30 10:13:04 2001","","Mon Apr 2 12:19:11 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 100-458 are 25% similar to PG1708, a predicted 4-hydroxybutyrate coenzyme A transferase. Similarities are also seen to PG0623, a predicted 4-hydroxybutyrate coenzyme A transferase.","Mon Apr 2 12:19:11 MDT 2001","Mon Apr 2 12:19:11 MDT 2001","-60% similar to PDB:2G39 Crystal structure of coenzyme A transferase from Pseudomonas aeruginosa (E_value = 8.2E_111);-47% similar to PDB:2OAS Crystal Structure of 4-hydroxybutyrate coenzyme A transferase (AtoA) in complex with CoA from Shewanella oneidensis, Northeast Structural Genomics Target SoR119. (E_value = 3.8E_23);","","","Residues 1 to 488 (E-value = 1.2e-156) place PG0905 in the AcetylCoA_hydro family which is described as Acetyl-CoA hydrolase/transferase (PF02550)","Mon Apr 2 12:19:11 MDT 2001","34540756","","","","","","1","","","PG1013" "PG0906","1073905","1075914","2010","ATGGAAGGATCACAACAAACAATCACATCCAAGCAGCTTGTCAGGATGCTGAAAGATGCTTCGAGAGGATCGAAGGGGAAAGGATCGGGAGAAATGAAATTTTGTTTCCTGATAGGAGCCGGAGCCTCCATCTCTTCCGGTATTCCCTCGGGTGCGAAGTTGGCTTGGGACTGGCTTCAGCAGATAAAAGAGGACTGTGACGGGGAGGATTTCGAAGACTGGAAAATCGAAATCAAGATGCCCGATCAGCATATTGAAGAAAGAGTAGGAGAGTTTTATCCCGAGATTTATGAAAAGCGATTCGGTCATGCCCCCGAAACCGGCTATGATTATATCAGAGGTCTTATGGAAGGCCGAGAGCCATCTCTCGGCTACCTTATTTTGGCCAATATCATGGTGAGAGAAAAGCACAATGTGGTGATCACGACCAATTTCGACAATCTTTTGGAGGATGCCATTCGTACTTATACAAAGGAAAAACCCTTCATCGCCGGTCACGAGGCTTTGGCCGATTATGTGCCCAAACGCAGTGATAGGCCTATTATTCTGAAGCTCCATCGGGATTTGTTCTTACAGCCCTTTTCCGATCAGTTGAATACGGATATTTTACAGGCGGCTTGGGAATCCATATTAGGAAAATTCCTTTCGGACTATCACCTGATTGTACTCGGTTATGGCGGAAATGATGGGAGTTTGATGAATTATTTACTCAAGCTCAAAAATAGAAAGCCTATTTATTGGTGTGTTCGTAATACGGATAAGGCTACATCAAAATCCTTATGGAACACTCTATCACCTAAGGCTAAAAGGCTGCTCAAGAATGACGGCTACCTCGTCCCGATAGATGATTTTGACAGGTTCATGTACGATTGTTACGCGGCATTGGGCTATAAGTTCCTTGAGGGGATAGAAAAGATAGAGAAACCGAAATCGATACATGAAATCCTAAAGCCGAATTATGCGCGAATCGAAAGTATCCAAACACAGTTGAGACAACTTTCGCAAACGGAAGAAGAATTGTCGAAAGAAAGTTTTCAATCGATCAAAAGCTTTTTGCCTGATTCTTGGATGTGGATACTGAAGGCCAATCAAGAGAAGGATATAGACAAGAAAGACAAGATCTACCGAGAAGGTATTGCCAAGTATCCTCAAGATGCGAATCTATTGGGAGATTATGCCGATTTCTTATGTGATATCTGTCATGATTACGACAGAGCCGAGGCGTATTACAAGCGAGCATTAGAGGCCGATCCGAATCATGCGAATACTCTTGGCAATTATGCTTTATTCTTAAAGGATGTCCGTCACGATTACGACCAAGCCGAGGCATATTACAAGCGAGCATTAGCGGCGGATCCGAATCATGCGAATAATCTTGGGAATTATGCCAATTTCTTATATAATATTCGTTGCGATTACGACCAAGCCGAGACGTATTACAAGAAAGCATTAGAGGCAGATCCGAATCATGCGAATACTCTTGGGAATTATGCCAATTTCTTATGTGATATTCGTCACGATTACGACCAAGCCGAGGGGTATTACAAGAAGGCATTAGAGGCAGATCCGAAGAACGCAATTACTCTTGGCAATTATGCCTTATTCTTAAATGATATTCGTCACGCTTACGACCAAGCCGAGGCGTATTACAAGCGAGCATTAGAGGTAGATCCGAAGAGTGCCAATAAGCTTGGCAATTATGCTCATTTTCTCATTACGTGTCGGGGGGATTTCAAACGTGCTGATAGCTTGATTCAGCAAGCATTCGAGAATGCCGATAATGACGAAGAGACGAAACCCTTGCAGGCCAAGTTATGGTTCTACAGGTATGCGCACTATTACGAGGAATGGGGAGCCGAGGCGGAAAAAGAGCTGGCGGCTTTGCTGAATGTCGGAGCGAAATCCATCGGCTGGAACTTGGCCCCGGATATAGAGCTGGCTCGGAAAAACAAGCATCCGCATATAGAGCAGGTCGAAGCCTTTGCCAAGGCATTGACAGAGAAAGCACAG","5.80","-13.01","77197","MEGSQQTITSKQLVRMLKDASRGSKGKGSGEMKFCFLIGAGASISSGIPSGAKLAWDWLQQIKEDCDGEDFEDWKIEIKMPDQHIEERVGEFYPEIYEKRFGHAPETGYDYIRGLMEGREPSLGYLILANIMVREKHNVVITTNFDNLLEDAIRTYTKEKPFIAGHEALADYVPKRSDRPIILKLHRDLFLQPFSDQLNTDILQAAWESILGKFLSDYHLIVLGYGGNDGSLMNYLLKLKNRKPIYWCVRNTDKATSKSLWNTLSPKAKRLLKNDGYLVPIDDFDRFMYDCYAALGYKFLEGIEKIEKPKSIHEILKPNYARIESIQTQLRQLSQTEEELSKESFQSIKSFLPDSWMWILKANQEKDIDKKDKIYREGIAKYPQDANLLGDYADFLCDICHDYDRAEAYYKRALEADPNHANTLGNYALFLKDVRHDYDQAEAYYKRALAADPNHANNLGNYANFLYNIRCDYDQAETYYKKALEADPNHANTLGNYANFLCDIRHDYDQAEGYYKKALEADPKNAITLGNYALFLNDIRHAYDQAEAYYKRALEVDPKSANKLGNYAHFLITCRGDFKRADSLIQQAFENADNDEETKPLQAKLWFYRYAHYYEEWGAEAEKELAALLNVGAKSIGWNLAPDIELARKNKHPHIEQVEAFAKALTEKAQ","1073905 1075914","The majority of the significant hits correspond to bases 300-600 of PG0906. TIGR ID: PG1014","conserved hypothetical protein","Cytoplasm","Numerous weak hits to gapped BLAST; e.g. residues 437-536 are 41% similar to fragment corresponding to pir||T45644 hypothetical protein of Arabidopsis thaliana, residues 404-513 are 35% similar to fragment corresponding to gb|AAD55471.1|AC009322 11 unknown protein of Arabidopsis thaliana, residues 403-598 are 28% similar to fragment corresponding to gb|AAB84589.1| O-linked GlcNAc transferase of Methanothermobacter thermautotrophicus.","
InterPro
IPR001440
Repeat
Tetratricopeptide TPR_1
PF00515\"[402-420]T\"[421-455]T\"[463-490]T\"[491-525]T\"[526-560]TTPR_1
InterPro
IPR003107
Repeat
RNA-processing protein, HAT helix
SM00386\"[366-398]T\"[401-433]T\"[436-468]T\"[506-538]T\"[541-573]THAT
InterPro
IPR011990
Domain
Tetratricopeptide-like helical
G3DSA:1.25.40.10\"[364-595]TTPR-like_helical
InterPro
IPR013026
Domain
Tetratricopeptide region
SM00028\"[383-420]T\"[421-455]T\"[463-490]T\"[491-525]T\"[526-560]TTPR
PS50005\"[387-420]T\"[422-455]T\"[457-490]T\"[492-525]T\"[527-560]TTPR
PS50293\"[386-595]TTPR_REGION
noIPR
unintegrated
unintegrated
PTHR23083\"[374-572]TPTHR23083
PTHR23083:SF23\"[374-572]TPTHR23083:SF23
SSF48452\"[352-611]TSSF48452
SSF52467\"[1-152]TSSF52467


","BeTs to 12 clades of COG0457COG name: TPR-repeat-containing proteinsFunctional Class: RThe phylogenetic pattern of COG0457 is AMTKYQVCEB-HUJ--OLINXNumber of proteins in this genome belonging to this COG is 21","No significant hit to the Blocks database.","Residues 403-598 are 28% similar to a (PROTEIN REPEAT TPR DOMAIN NUCLEAR PUTATIVE RECEPTOR) protein domain (PD000069) which is seen in O26186_METTH.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Wed Jan 31 10:13:56 2001","Wed Jan 31 10:01:31 2001","Tue Jan 30 13:38:17 2001","Tue Jan 30 10:43:51 2001","","Mon Apr 2 12:21:46 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 384-501 are 30% similar to PG0853, a conserved hypothetical protein. ","Mon Apr 2 12:21:46 MDT 2001","Mon Apr 2 12:21:46 MDT 2001","-57% similar to PDB:2FO7 Crystal structure of an 8 repeat consensus TPR superhelix (trigonal crystal form) (E_value = 4.6E_19);-62% similar to PDB:1NA0 Design of Stable alpha-Helical Arrays from an Idealized TPR Motif (E_value = 8.2E_16);-48% similar to PDB:1W3B THE SUPERHELICAL TPR DOMAIN OF O-LINKED GLCNAC TRANSFERASE REVEALS STRUCTURAL SIMILARITIES TO IMPORTIN ALPHA. (E_value = 6.5E_13);","","","No significant hits to the Pfam 11.0 database","Mon Apr 2 12:21:46 MDT 2001","34540757","","","","","","1","","","PG1014" "PG0907","1076280","1079003","2724","ATGGAAAAGAAAAGAGTCTACACCTTCGGCAATGGGAAGGCCGAGGGAGAAGCAGGGATGAAGAACCTGCTCGGAGGTAAGGGTGCCAATTTGGCCGAAATGAATCTTATCGGTGTGCCGGTGCCTCCCGGTTTTACGATCACGACAGAGGTTTGTCAGGAATACTATACATTGGGCCGAGACAAAGTAGTGGAGCTGCTGCGTGGCGAAGTAAACGATGCGATCAGAAATATCGAGGGACTGATGAAGTCGAAATTCGGCGACACCGAGAACCCTCTTCTCGTATCCGTACGTTCGGGAGCACGCGCTTCCATGCCCGGTATGATGGATACGATCCTCAACCTCGGTCTGAACGACGAAGTGGTGGCCGGTATCGTACGCAAGACCGGCAACGAACGATTTGCCTGGGACTCTTATCGTCGCTTCGTGCAGATGTACGGCGACGTGGTACTCGGTATGAAGCCCACGAATAAGGAAGATATAGATCCGTTCGAAGAAATAATCGAGAAGGTCAAGGAAGAGAATGGTGTGCACTTGGACAACGAACTCTCCGTAGAAAACCTCAAAGACCTCGTATCCCGTTTCAAGGCAGCCGTAAAGGCTCAGACGGGTAAGGACTTCCCTTTCTCTGCCGAAGAGCAGCTTTGGGGTGCTATCATGGCCGTGTTCGACTCTTGGATGAACGAGCGTGCCATCCTCTACCGTCGCATGGAAGGTATCCCGGCAGAATGGGGTACGGCTGTGAACGTACAGGCTATGGTATTCGGCAACATGGGCGAAACTTCGGCTACCGGAGTGTGCTTCTCTCGTGATGCCGGTAGCGGTGAGGATCTCTTCAACGGAGAATACCTCATCAACGCTCAGGGCGAGGACGTTGTGGCCGGTATTCGTACACCTCAGCAGATCACGAAGATCGGATCGCAACGCTGGGCAGAAAGAGCCGGTATCGCAGAAGATGTGCGCGTGGCTCAGTATCCTTCCATGGAAGAGGCCATGCCCGAAATCTACAAGGAGCTGGATACCCTGCAGCAGAAACTGGAGGATCACTACCGCGATATGCAGGATATGGAGTTCACCGTACAGGAAGGTAAGCTCTGGTTCCTCCAGACCCGTAACGGTAAGCGTACGGGTTGTGCCATGGTGAAGATCGCCATGGATCTCTTGCGTCAGGGTATGATCAGCGAGGAAGAAGCCCTTATGCGCGTCGAACCTAACAAGCTGGACGAATTGCTCCACCCCATTTTCGACAAGTCTGCTCTCCTTAGAGCACGTGTACTGACCAAGGGCTTGCCTGCTTCGCCGGGTGCCGCTACGGGTCAGATCGTTTTCTTCGCCGACGATGCCGCTCAGTGGAAAGAGGATGGCAAGCGTGTGGTGATGGTGCGTATCGAGACTTCGCCCGAAGACTTGGCCGGTATGTCTGCCGCCGAAGGTATCCTGACGGCTCGCGGAGGTATGACTTCGCATGCTGCCGTAGTGGCCAGAGGTATGGGCAAATGCTGCGTATCGGGAGCAGGTGCATTGAACATCGACTATAAGGCACGTACCGTAGAGATCGATGGAACCCTCTTCAAAGAAGGCGACTACATCTCCATCAACGGTTCTACCGGTGAGATATACGAAGGACAGGTGGAGACGAAAGCCGCCGAAATGGATCAAGATTTCGCCGATCTGATGGCTTTGGCCGATAAGTATGCCAAGCTGAAAGTTCGTACGAATGCCGATACTCCTCACGATGCCGAGATAGCTCGCAGCTTCGGTGCCGTAGGTATCGGTCTTTGCCGTACGGAGCATATGTTCTTCGAAGGCGAGAAGATCAAAGCCATGCGCGAAATGATTCTGAGCGAGACGGCAGAAGGTCGCGTACGTGCTTTGGCCAAGATCCTGCCTTATCAGCAGGAAGACTTCAAGGGTATCTTCCGTGCTATGAATGGTTTCCCCGTGAATGTACGTCTCCTCGATCCACCCCTGCACGAGTTCGTACCTCATGATCTGAAGGGTCAGGAGGAGATGGCTCGGATGATGGGTGTGGATGTAAGGATAATTCAGAAGCGTGTGGAAGATCTGATGGAGCACAACCCCATGCTCGGTCATCGCGGTTGCCGTCTGGGTAATACCTATCCGGAGATTACGGAGATGCAGACACGTGCCATCCTCGGTGCTTGCTTGGAGCTGAAGAAGGAAGGTGTAGTCTGTCTGCCTGAGATCATGGTGCCTCTGACGGGGATCCTCCATGAGTTCAAACATCAGGAAGAGGTAATCCGTGCTACGGCTGCCAAGCTGTTCGAAGAGAAGGGCGACAGTGTGGAATTCCAAGTAGGTACGATGATCGAAGTACCGCGTGCTGCCCTTACGGCGGACAGAATCGCCTCTTCGGCCGAGTTCTTCTCATTCGGGACCAACGACCTTACGCAGATGACTTTCGGTTACTCTCGTGACGACATCGCTTCGTTCCTCCCCATCTACCTCGACAAGAAGATCCTGAAAGTGGATCCTTTCCAGGTACTCGACCAGAAAGGTGTAGGCCAGCTCGTAAGAATGGCTACGGAGAACGGCCGCAAGGCTCGTCCCAATCTGAAGTGCGGTATCTGCGGTGAGCACGGTGGTGAGCCTTCGTCTGTGAAGTTCTGCCATAGAGTGGGATTGAACTACGTATCCTGCTCTCCTTTCCGTGTGCCTATTGCACGATTGGCAGCAGCACAGGCCGTTATCGAAGAAGGCAAA","5.20","-22.10","100484","MEKKRVYTFGNGKAEGEAGMKNLLGGKGANLAEMNLIGVPVPPGFTITTEVCQEYYTLGRDKVVELLRGEVNDAIRNIEGLMKSKFGDTENPLLVSVRSGARASMPGMMDTILNLGLNDEVVAGIVRKTGNERFAWDSYRRFVQMYGDVVLGMKPTNKEDIDPFEEIIEKVKEENGVHLDNELSVENLKDLVSRFKAAVKAQTGKDFPFSAEEQLWGAIMAVFDSWMNERAILYRRMEGIPAEWGTAVNVQAMVFGNMGETSATGVCFSRDAGSGEDLFNGEYLINAQGEDVVAGIRTPQQITKIGSQRWAERAGIAEDVRVAQYPSMEEAMPEIYKELDTLQQKLEDHYRDMQDMEFTVQEGKLWFLQTRNGKRTGCAMVKIAMDLLRQGMISEEEALMRVEPNKLDELLHPIFDKSALLRARVLTKGLPASPGAATGQIVFFADDAAQWKEDGKRVVMVRIETSPEDLAGMSAAEGILTARGGMTSHAAVVARGMGKCCVSGAGALNIDYKARTVEIDGTLFKEGDYISINGSTGEIYEGQVETKAAEMDQDFADLMALADKYAKLKVRTNADTPHDAEIARSFGAVGIGLCRTEHMFFEGEKIKAMREMILSETAEGRVRALAKILPYQQEDFKGIFRAMNGFPVNVRLLDPPLHEFVPHDLKGQEEMARMMGVDVRIIQKRVEDLMEHNPMLGHRGCRLGNTYPEITEMQTRAILGACLELKKEGVVCLPEIMVPLTGILHEFKHQEEVIRATAAKLFEEKGDSVEFQVGTMIEVPRAALTADRIASSAEFFSFGTNDLTQMTFGYSRDDIASFLPIYLDKKILKVDPFQVLDQKGVGQLVRMATENGRKARPNLKCGICGEHGGEPSSVKFCHRVGLNYVSCSPFRVPIARLAAAQAVIEEGK","1076280 1079003","TIGR ID: PG1017","pyruvate phosphate dikinase","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 4-904 are 58% similar to sp|P22983|PODK CLOSY pyruvate, phosphate dikinase (pyruvate, orthophosphate dikinase) of Clostridium symbiosum, residues 3-906 are 56% similar to gb|AAG12986.1|AF079585 2 puruvate phosphate dikinase 2 of Trypanosoma cruzi, residues 1-908 are 56% similar to gb|AAD35361.1|AE001709 7 pyruvate, orthophosphate dikinase of Thermotoga maritima.This sequence is similar to BT0644.","
InterPro
IPR000121
Domain
PEP-utilizing enzyme
PD000940\"[555-892]TPEP_utilizers
PF02896\"[549-904]TPEP-utilizers_C
PS00742\"[794-812]TPEP_ENZYMES_2
InterPro
IPR002192
Domain
Pyruvate phosphate dikinase, PEP/pyruvate-binding
PF01326\"[5-396]TPPDK_N
InterPro
IPR008279
Domain
PEP-utilising enzyme, mobile region
PF00391\"[447-537]TPEP-utilizers
PS00370\"[484-495]TPEP_ENZYMES_PHOS_SITE
SSF52009\"[411-539]TPEP_mobile
InterPro
IPR010121
Family
Pyruvate, phosphate dikinase
PIRSF000853\"[3-908]TPPDK
TIGR01828\"[3-904]Tpyru_phos_dikin
InterPro
IPR013815
Domain
ATP-grasp fold, subdomain 1
G3DSA:3.30.1490.20\"[3-254]TATP_grasp_subdomain_1
InterPro
IPR013816
Domain
ATP-grasp fold, subdomain 2
G3DSA:3.30.470.20\"[255-375]TATP_grasp_subdomain_2
noIPR
unintegrated
unintegrated
G3DSA:3.20.20.60\"[566-907]TG3DSA:3.20.20.60
G3DSA:3.50.30.10\"[417-541]TG3DSA:3.50.30.10
PTHR22931\"[247-304]T\"[328-906]TPTHR22931
PTHR22931:SF9\"[247-304]T\"[328-906]TPTHR22931:SF9
SSF51621\"[544-907]TSSF51621
SSF56059\"[1-412]TSSF56059


","BeTs to 11 clades of COG0574COG name: Phosphoenolpyruvate synthaseFunctional Class: GThe phylogenetic pattern of COG0574 is aMTk-qvCeBR-uj---l--xNumber of proteins in this genome belonging to this COG is 1","***** IPB000121 (PEP-utilizing enzyme) with a combined E-value of 4.2e-83. IPB000121A 25-34 IPB000121B 530-545 IPB000121C 587-600 IPB000121D 647-659 IPB000121E 691-702 IPB000121F 736-746 IPB000121G 777-814 IPB000121H 858-888","Residues 459-866 are 58% similar to a (PYRUVATE TRANSFERASE KINASE SYSTEM PHOSPHORYLATION) protein domain (PD000940) which is seen in PODK_CLOSY.Residues 372-456 are 51% similar to a (PYRUVATE DIKINASE ORTHOPHOSPHATE) protein domain (PD003552) which is seen in PODK_MESCR.Residues 104-145 are 78% similar to a (PYRUVATE DIKINASE ORTHOPHOSPHATE) protein domain (PD003745) which is seen in PODK_CLOSY.Residues 21-101 are 41% similar to a (PROTEIN PPDK) protein domain (PD135910) which is seen in O05566_MYCLE.Residues 4-371 are 24% similar to a (PYRUVATE, PHOSPHATE DIKINASE PYRUVATE) protein domain (PD215551) which is seen in O83728_TREPA.Residues 162-371 are 56% similar to a (PYRUVATE DIKINASE ORTHOPHOSPHATE TRANSFERASE PHOSPHATE) protein domain (PD001289) which is seen in PODK_CLOSY.Residues 867-894 are 89% similar to a (PYRUVATE DIKINASE ORTHOPHOSPHATE) protein domain (PD003936) which is seen in PODK_CLOSY.Residues 328-371 are 63% similar to a (PYRUVATE DIKINASE ORTHOPHOSPHATE) protein domain (PD152347) which is seen in PODK_CLOSY.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Feb 22 08:39:21 MST 2001","Tue Dec 2 17:32:53 2003","Tue Jan 30 14:28:23 2001","Thu Feb 22 08:38:18 MST 2001","Thu Feb 22 08:38:18 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 22 08:38:18 MST 2001","-77% similar to PDB:2FM4 NMR structure of the phosphoryl carrier domain of pyruvate phosphate dikinase (E_value = 2.3E_40);","","","Residues 4 to 400 (E-value = 9.9e-154) place PG0907 in the PPDK_N family which is described as Pyruvate phosphate dikinase, PEP/pyruvate binding domain (PF01326)Residues 436 to 537 (E-value = 3.6e-46) place PG0907 in the PEP-utilizers family which is described as PEP-utilising enzyme, mobile domain (PF00391)Residues 549 to 904 (E-value = 5.4e-157) place PG0907 in the PEP-utilizers_C family which is described as PEP-utilising enzyme, TIM barrel domain (PF02896)","Tue Dec 2 17:32:53 2003","34540759","","","Pocalyko DJ, Carroll LJ, Martin BM, Babbitt PC, Dunaway-Mariano D. 1990. Analysis of sequence homologies in plant and bacterial pyruvate phosphate dikinase, enzyme I of the bacterial phosphoenolpyruvate: sugar phosphotransferase system and other PEP-utilizing enzymes. Identification of potential catalytic and regulatory motifs. Biochemistry. 1990 Dec 4;29(48): 10757-65. PubMed: 2176881. ","","Thu Feb 22 08:38:18 MST 2001","1","","","PG1017" "PG0908","1079036","1079341","306","ATGAAGAGGCTGACACCTATCGGTTTATTGGAGAAAGAGCAAGTCCGATTCGTCGGGCTTGCTCTTTCCTTTTTTGTCCCCAATCTCGGTTCAGAGGCTTATCCTGAACATACAGTCATTCCTCTTTTTGGGGGGCTTGATCCGAAAAGGAAAACACAAGGATCGTTAATAGAATTTATTTTCTACAGTTCATCCAGCATAAAAACTACAAATATGTGGGGAGATGGGAAAGAAAAATACCAATCGGTCGGTATTGTACGAGGTGCGATTATCATAGTCCTTTGCAATGATTTCTCGGAACACCTT","8.40","1.42","11360","MKRLTPIGLLEKEQVRFVGLALSFFVPNLGSEAYPEHTVIPLFGGLDPKRKTQGSLIEFIFYSSSSIKTTNMWGDGKEKYQSVGIVRGAIIIVLCNDFSEHL","1079036 1079341","TIGR ID: PG1018","hypothetical protein","Cytoplasm","No hits found in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-33]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Jan 30 14:38:09 2001","Tue Jan 30 14:51:51 2001","Tue Jan 30 14:38:09 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540760","","","","","","1","","","PG1018" "PG0909","1079357","1080535","1179","ATGAAAAAAAATTTTCTTTTTTTCTCCCTCGTTTTAGCAGCCATCATGTCGTTGCTGTCATCTTGTGCCAAGGATACGCCGGATGCGCCCGAACAGTACGCTATCACTATCCGTGCCAAACTACCGGAAGGCAGTACGATAGAGAGTCTCGCAGGTATAGCCATCGAATTCCTCGATCTTCGTACCCAACAGAAAGTGGAAAAACAGCTCGACAAAGCCGGTGTTTGCTCTCTTAGTCTGGATGCCAGTGTATATACGATTACGATACGTGGCGAAATAGGGAACAACAGTATCGTTGCCATCAAGGAAAACTATTCCATCGCAGAGAATACTACCTTGGAGCTTCCACTCATTGTGACGAAGATCCGCCCTTCCGGTCTGCTGTTCAAAGAAGTATTTTTCAATGGAGAGACCAACAACGGGCAGATGATGCACCCGGATCAGTACTTCGTCATATACAATAATAGCGATAAGGTGGTCTATGCCGATGGTGTCGCTTTCGGTCTTGCCGCACATGCCAACGTAACAGGTGAAGACGCTTTCACCGAGGAGTTGACCAAGAACAACCGCATCGTCCTTTCCATGATCTATACCATTCCCGGCAACGGTTCGCAGTATCCCATCCAACCCGGTGGTCAGCTCGTGATAGCCGGAACGGCCATCAATCACCACGATGCCGAGCATCCGAATTCCGTGGACTTGAGCGGTGCCGATTTGGAAGTCTATGAGCCGGATCAGCCCGCAAACTTCGGACAGGATGTGGACAACCCCAATGTTCCCAATATGGTGAAGATATTTAATCGATTCGGTGTTTTCATGATGCATCCCAGAGGATTTATCCCTCCTGTTCTTTTCGAGATAGATGAGCCGATCGAGACTTTCCTGGCCAAGAACCAGTTCGAGTACACGAACAATGATGGAGAGAACATTATGCTCTATGCCGTTCCGGTGGAAAATGTGTTGGATGGTATCGAGACCGCCAATACCGGTAATATGAAAGTCAAGTCCCTGCCCGTGACAGTGGATAAGTCCATGATCGGTGTACCGGGTTGCCACCGTGGCATACTCATTCTTCGCAAGACGGAAGAAAAGAATGGCCGTACCTATATGATCGACACCAACGACTCTGAAAATGACTGTATAGCCCGTCAAGGACAAAACTCTTTTCCTGCAAGATTC","4.70","-16.47","43297","MKKNFLFFSLVLAAIMSLLSSCAKDTPDAPEQYAITIRAKLPEGSTIESLAGIAIEFLDLRTQQKVEKQLDKAGVCSLSLDASVYTITIRGEIGNNSIVAIKENYSIAENTTLELPLIVTKIRPSGLLFKEVFFNGETNNGQMMHPDQYFVIYNNSDKVVYADGVAFGLAAHANVTGEDAFTEELTKNNRIVLSMIYTIPGNGSQYPIQPGGQLVIAGTAINHHDAEHPNSVDLSGADLEVYEPDQPANFGQDVDNPNVPNMVKIFNRFGVFMMHPRGFIPPVLFEIDEPIETFLAKNQFEYTNNDGENIMLYAVPVENVLDGIETANTGNMKVKSLPVTVDKSMIGVPGCHRGILILRKTEEKNGRTYMIDTNDSENDCIARQGQNSFPARF","1079345 1080535","TIGR ID: PG1019","hypothetical protein","Cytoplasm","No significant hits in gapped BLAST.","
noIPR
unintegrated
unintegrated
PS51257\"[1-22]TPROKAR_LIPOPROTEIN


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Wed Jun 13 16:44:52 MDT 2001","","Wed Jun 13 16:44:52 MDT 2001","Wed Jun 13 16:44:52 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Jun 13 16:44:52 MDT 2001","Wed Jun 13 16:44:52 MDT 2001","","","Tue Jan 30 14:46:44 2001","Tue Jan 30 14:46:44 2001","Tue Jan 30 14:46:44 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Jun 13 16:44:52 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jun 18 14:08:44 MDT 2001","34540761","","","","","","1","","","PG1019" "PG0910","1080710","1083517","2808","ATGAAAAAGAATGGACTTTCTTACATCCCCGTATTGCGTGCTTTATTGATCTGTACGCTTTTGCTGCTCGCGTATGGAGCTTCGGCTCAGCATCATGTGTCCACTTGTACGATCCGTGGTAAGGTGACGGATATGGCGGGAAAGGAGGGCATTGGTTTTGCCACTGTACTATTGGCGGATCAGGCTTATGGGGTAGCCTGTGACGGGAAGGGAGAGTTTGTGATCAAACGGGTTACAGCCGGATCGTACCGTGTCGTGGTCAGCTGCATGGGCTTTGCTTCGTTCGAGACCACGCTCCATATCAAAGCAGACACCACGGTACACTTCCGACTCAAAGAACATAGTATCGCTCTGAAAGAGGTGCAGGTGCTGGCCACTTATAAGAACAAGACGGACGGCAACGTATCGGTGGATCGGACTGCTCTGGAACATATCCAGCCTACCTCCCTGCGCGACATCTTTCTCCTGCTTCCGGGTAATGTGGTGCAAAGCAACAGCCTGACCGGATTCGTGGGAACGACTTCTCGACAAATAGGCAGCGACGATAATACCTCTTTGGGAACCAACATCTCCATCGATGGTATGCCGCTTTCGAACGATGCCATGCGTACCCAACTGTATGGTATCACGGGAGTAGATCGGTCTGACCTGTACGTTGCGGATCGTACCGTTACTCGCAGGACGGGAATGAATGCCGGTATCGACCTTCGTACCATCTCCACAGATCATATCGAAACCATCGAAATAGAACGGGGCATCTCATCCGTAGGGGAAGGTAATTTGTCGAGCGGAGCCATTCGCATCCGTACCAAGCAAGGGTCTGCTCCACTCCAAATGCGTGTCAAGGCTGATCCCCTTAGCAAACTGGCCTATGTGGGGAAGGGATTCAAAGTGTCCAAGCGCGGGGCATCCATTCATACGGGAATAGACTTCCTGCACAACAAACCCGATGTGAGGGAGGTGTTGGATAGCTATAAGCGGAGTACGCTGCATGCCAGATATAGCGATCAGTTGAATTACGGGGATATGATCGTGGACTTGGGTATCGGGCTGATGCAGACCTTTTCCATTCAAGACAGCAAATCGGATCAGCTCGTCAATGAGTATGAAGAGACCTACAACTCCAAGTATTTGCGTTCTTCTCTTTCCTTCGATGCCAAAGTCCGCTTTTCGGGTAGTTGGCTCAATAGTATAGACTGGCTTCTCTCTGCCGACTATACTTCCGATCTGCTCAAAAGGAAGAAATACTACATCAGTACGAGTGGCCCGAAGAGTATGCCCGTAGCTACCGAAAGCGGAGAACATGAAGGTGTTTTCCTCCCTTCGGCCTACTATGCCTACTATGAAATAGACAATCAGCCGCTCTATTTCTTCAGCCGTTTCAAAGCCAATACCGATATAAACTTCACCGAACGTCATCACCATCATTTGCTGTACGGGCTGGAAGCTCGCAGCAGTAAGAATATCGGTAGGGGAGTGGTGGCCGATCCTACTCGTCCGCCTTATCCGGGAAACAACAGCTATATCCGCCCTCGTCCCAACTATAATATACCGGCTTCGGTCTATGCTGCATTCTTTGTCGAGGACAGGGCTTCTGTCGAATGGGGAGCCAATAGGCTGGGTATTCAGGCCGGACTGAGGGCTACGCATCTATTCAATCTGCCTTCGTCCTATGCCCTCTCTCGGAAGATGCTGATAGAGCCGCGTATCAAGGCCAACTGGCAGTACAGAGCCGAACATCTGTCGATAAACCTGCGTGCCGGATACGGTATGGAAAACAAGTTGCCTACACTGGATCATCTGTATCCGGACAAGATCTACCGTGACTTCATGGTGCTGAATGCCTATATGCAGAATCCCGAACTGGATCATCTCATCACTTATACTTATATCCACAATCCCGAGAATCCTGCTATCAGGGAGAACCGCAATGTCAAAAAAGAGATCGGCATAGATATGACGTACAAGCGTTTCGACTTTTCTTTGACACTCTTCCACGAAGAATCGCGACGCGGTTTCGAGTATTTCGACTCCTATCTGCCTATAGCCTTCGACCGCTATACCAAGCTGATAGCCCCTCTTCCTCCGGGACACAAACCGCAGAAGGAGGATTATATTCAGGAGCATCACAAGGATTTCTTTGTTATCCCCACCGTGCAGAATTCTGCCAAAGTAGTCAAGCGCGGTATCGAATTTCGTTTGCGCACACCTTATCTGAAAGCCATCAATACCCAAGTCGAAGTCAATGGAGCCTATTACCATACGCTCTACGCTTCGGGTATCCCTATCATGTTCCGACCGATAGTGTCGGAGTACGAGCAGGCTCTCTATCCTTATGTGGGCTATTACGAAGGCAGTCTGCACAAACACTACCAACGCTTCAATACGAATGTTTGGGTCAATACGCACTTCCCTCGTTATAAACTGATCTTCACTTCCTTTTTCCAGATTATCTGGCACGATGCCTCGTACAGGGGGCATGAGGAGAGCGAGTTCCCCTATGCCTATATGGATCTCGATGGAGTAGTCCATCCCACGAGCAAGGCTGCCATTCTGGAGGCTGCTGCCACGAACGATATTCTCAAGTACTTGAGCCGAGAGCGGACGGAGCTATACTACAGGGCTACATACAAACCCATATCGCTGCGTATCAATTTCAAAGCCACCAAAGAGTTCTCCGACCGTATGCGGCTGGCTTTTTTCGTGGACAATATCATCGACATCAATCCCAAATACAAACAGGCCAATAATACGACGGAGCGAGACTGGTCTATACCCTATTTCGGAATAGAAACGACATTCACCCTA","9.70","19.34","106672","MKKNGLSYIPVLRALLICTLLLLAYGASAQHHVSTCTIRGKVTDMAGKEGIGFATVLLADQAYGVACDGKGEFVIKRVTAGSYRVVVSCMGFASFETTLHIKADTTVHFRLKEHSIALKEVQVLATYKNKTDGNVSVDRTALEHIQPTSLRDIFLLLPGNVVQSNSLTGFVGTTSRQIGSDDNTSLGTNISIDGMPLSNDAMRTQLYGITGVDRSDLYVADRTVTRRTGMNAGIDLRTISTDHIETIEIERGISSVGEGNLSSGAIRIRTKQGSAPLQMRVKADPLSKLAYVGKGFKVSKRGASIHTGIDFLHNKPDVREVLDSYKRSTLHARYSDQLNYGDMIVDLGIGLMQTFSIQDSKSDQLVNEYEETYNSKYLRSSLSFDAKVRFSGSWLNSIDWLLSADYTSDLLKRKKYYISTSGPKSMPVATESGEHEGVFLPSAYYAYYEIDNQPLYFFSRFKANTDINFTERHHHHLLYGLEARSSKNIGRGVVADPTRPPYPGNNSYIRPRPNYNIPASVYAAFFVEDRASVEWGANRLGIQAGLRATHLFNLPSSYALSRKMLIEPRIKANWQYRAEHLSINLRAGYGMENKLPTLDHLYPDKIYRDFMVLNAYMQNPELDHLITYTYIHNPENPAIRENRNVKKEIGIDMTYKRFDFSLTLFHEESRRGFEYFDSYLPIAFDRYTKLIAPLPPGHKPQKEDYIQEHHKDFFVIPTVQNSAKVVKRGIEFRLRTPYLKAINTQVEVNGAYYHTLYASGIPIMFRPIVSEYEQALYPYVGYYEGSLHKHYQRFNTNVWVNTHFPRYKLIFTSFFQIIWHDASYRGHEESEFPYAYMDLDGVVHPTSKAAILEAAATNDILKYLSRERTELYYRATYKPISLRINFKATKEFSDRMRLAFFVDNIIDINPKYKQANNTTERDWSIPYFGIETTFTL","1080710 1083517","TIGR ID: PG1020","conserved hypothetical protein; possible outer membrane receptor protein","Outer membrane, Cytoplasm","This sequence corresponds to gi:34397076 in Genbank.Its nearest neighbor in the NR database is gi:53714516 from Bacteroides fragilis YCH46.","
InterPro
IPR000531
Domain
TonB-dependent receptor
PF00593\"[528-934]TTonB_dep_Rec
InterPro
IPR008969
Domain
Carboxypeptidase regulatory region
SSF49464\"[37-114]TCarboxypepD_reg
InterPro
IPR012910
Domain
TonB-dependent receptor, plug
PF07715\"[130-266]TPlug
noIPR
unintegrated
unintegrated
G3DSA:2.60.40.1120\"[37-114]TG3DSA:2.60.40.1120
SSF56935\"[118-934]TSSF56935


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Mar 4 13:59:06 2005","Fri Mar 4 13:59:06 2005","Tue Jan 30 15:25:17 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 16-677 are 20% similar to PG0601, a predicted ton-B linked outer membrane receptor PG13. Residues 17-232 are 25% similar to PG1752, a predicted ton-B linked outer membrane receptor PG35.","Fri May 4 16:13:47 MDT 2001","Fri Mar 4 13:59:06 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Mar 12 11:51:26 MST 2001","34540762","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Fri Mar 4 13:59:06 2005","","1","","","PG1020" "PG0911","1083679","1085157","1479","GTGCAAACGAAAGAAAAAAGGGGGGCCGATCTTTTCCCGTTGAGCGATAAGCTGCGCGATTCGGCCTATGTTCGTTTCGGCTCGGCCTATGGCGATATTGCGGGCGACTATCTTCCGTACAACGGCAATAACTACTCCTCGCTCTCGCTCGAATCGGGTGGTCGCATCAGTGTCCGTAACTATGGCACATTGCAGGGCAGTGCTTCCTACTCACGTGGCATGCACAAACGCATCGGCTGGAATGCTCTGCGCAACGCCGAAGCCTACTATCCCTATTTGGTGTCCGATTCGACCGGCGGAGACTATCATTTCGAAGACTATCGGCTTGCCGGCTACTATTCTTTTCGCGCCGGCCGCTTGCCCCTCGGTATAGGCTTCTCATACAGGGGCGAAGTTGCTTATCGGCTGACCGATCCGCGTACGACCAATACGACCGGTGCATTGGAGCTTTCTTGTGCTACCTCTTTGACGCTGCCTCGAGAGAACAGGCTATCGCTTTCGGCTGCGTATCTCTATCATAGACAACACCTCACACAGTACAACTGGCGTCCCGGGCAGCAGGACAAATTCTTCGTCAGCTACGGTTTCGGTCAGGTGGATGTCAGCAACAGCCCTATCTGGTTCGGTATCTCCAGAATGAACTACGTCAACGGATGGAAGCTTAGCTCCCGTCTGGATACCCGTAGGGGCGATGCCATCGGTCTCGACTACAGCGGCTACTTCCTCGATACCGAAGAGAGGTCGTCCATCAATCTCTTTGCTTTGCTTTACAATCGCCTGCGACTCTATGGTAGCTGGCATCTGTCGGACTTCGATTTTTCATTTTCAGCCGACTATGCTCTGCGCCAAGGGATAGAGCGGATATACGAAGACTACAAGCCGGATGATAATTATCATATCTACGACCTCCGTATCTTGGCCATTCGCCGCTGGTATATGCTCAATGAGTTTTCTGCCCAAGCCCAAGCCTCCTACCGTATTCGCACGGATAGAGGTTGTGCCCTGAGAGTGAGTGCCGGTAGTGATTTCTACGGCTATGATGAGACGTATCGCAAGCATGGACATCATACCATGAGCGGAATGCTACGTCCTTTTGCCGGTATAGCCTATGACCATGCCGGATCCAAATTGGATTTTGGACTTTCGCTTTCGGCTGCTTATCGAATGGTGCTGACGCATTCGTATAAGATTCGTACCATCCAGAAAGAGCAGCTCGACTATCAGCTGGCCTATTTGCCCTATGCCTATCGTAATAGAGAAGGCGTGGAGGTGCGTTCCTCTCTGTACGTCTCGATTCCGATGCAGAATACCCACCGCCTGATGACAGAGCTGCGGTTGTATGGCGACCTGATGAAAAGAAAGGACGGTATAGCCTATGGCAAAACGCCCGGTGTCATCTCACATATCCTGTCCGATCCGCAAGCCGAACGAACGTCCGGCCATACCATCGGGGCTATCTGCAATATCTCCTACCTCTTC","10.00","13.24","56479","VQTKEKRGADLFPLSDKLRDSAYVRFGSAYGDIAGDYLPYNGNNYSSLSLESGGRISVRNYGTLQGSASYSRGMHKRIGWNALRNAEAYYPYLVSDSTGGDYHFEDYRLAGYYSFRAGRLPLGIGFSYRGEVAYRLTDPRTTNTTGALELSCATSLTLPRENRLSLSAAYLYHRQHLTQYNWRPGQQDKFFVSYGFGQVDVSNSPIWFGISRMNYVNGWKLSSRLDTRRGDAIGLDYSGYFLDTEERSSINLFALLYNRLRLYGSWHLSDFDFSFSADYALRQGIERIYEDYKPDDNYHIYDLRILAIRRWYMLNEFSAQAQASYRIRTDRGCALRVSAGSDFYGYDETYRKHGHHTMSGMLRPFAGIAYDHAGSKLDFGLSLSAAYRMVLTHSYKIRTIQKEQLDYQLAYLPYAYRNREGVEVRSSLYVSIPMQNTHRLMTELRLYGDLMKRKDGIAYGKTPGVISHILSDPQAERTSGHTIGAICNISYLF","1083517 1085157","TIGR ID: PG1022","conserved hypothetical protein","Outer membrane, Extracellular","This sequence corresponds to gi:34397078 in Genbank.Its nearest neighbor in the NR database is gi:53714514 from Bacteroides fragilis YCH46.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Wed Jun 13 16:42:46 MDT 2001","","Wed Jun 13 16:42:46 MDT 2001","Wed Jun 13 16:42:46 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Jun 13 16:42:46 MDT 2001","Wed Jun 13 16:42:46 MDT 2001","","","Fri Mar 4 14:03:45 2005","Fri Mar 4 14:03:13 2005","Tue Jan 30 15:56:01 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Jun 13 16:42:46 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jun 18 14:11:34 MDT 2001","34540764","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Fri Mar 4 14:03:45 2005","","1","","","PG1022" "PG0912","1085802","1085206","597","ATGTGCTATATCGAAACCATCCGCATCGAAGACGGCCTGCCCTATCTGCTTGCGCTCCATCAGGAACGAATGAGCCGCACGTGCGACGAAAAGGGCTTTCCCCTCCCGGAAATACCTTGCCTGACGAATCTATGCCCTCCGGAATTGATGTGCGGAATGACCAAATGTCGTATTCTATATGGTAAGGAGGGCATTTCGGACGTTTCCTTTTCACCTTATACACCACGCCAAATATCCTCCCTGCGTATCGTAACGGCTCCAGCCGATTTGGACTATCATTTGAAGCAGGTTGACCGTTCGTCTCTCGAAGCTCTTCTCAAGCAAAAAGGAGAAGCCGATGAAATTATTATCCTGCGCAACGGACTCCTGACAGACACATCCTACACCAACCTCCTTCTACATATCGGAGGAGAACTTCTCACACCGCGCGTCCCTCTCTTAGAAGGCGTACAACGCCGGTATCTGCTCCAATCCGGTCAAATACGACCGGCAGACCTGCAAATCGAAGACCTCAAAAAAGCAGAAGAAATACTGCTGATCAATGCCATGCTCCCCTTGGGGCATACCATTCGTATACACCCATCGCAGATTATTTTT","6.00","-3.08","22476","MCYIETIRIEDGLPYLLALHQERMSRTCDEKGFPLPEIPCLTNLCPPELMCGMTKCRILYGKEGISDVSFSPYTPRQISSLRIVTAPADLDYHLKQVDRSSLEALLKQKGEADEIIILRNGLLTDTSYTNLLLHIGGELLTPRVPLLEGVQRRYLLQSGQIRPADLQIEDLKKAEEILLINAMLPLGHTIRIHPSQIIF","1085802 1085206","TIGR ID: PG1023","conserved hypothetical protein","Cytoplasm","One significant hit and several weak hits in gapped BLAST; e.g. residues 5-183 are 36% similar to gb|AAC22833.1| H. influenzae predicted coding region HI1169 of Haemophilus influenzae Rd, residues 11-182 are 23% similar to emb|CAA17056.1| putative aminodeoxychorismate lyase of Schizosaccharomyces pombe, residues 57-186 are 31% similar to gb|AAD05859.1| P-aminobenzoate synthetase of Helicobacter pylori. ","
InterPro
IPR001544
Family
Aminotransferase, class IV
PD001961\"[113-183]TQ9CKY5_PASMU_Q9CKY5;
PTHR11825\"[106-186]TSUBGROUP IIII AMINOTRANSFERASE
noIPR
unintegrated
unintegrated
G3DSA:3.20.10.10\"[76-197]Tno description
PTHR11825:SF4\"[106-186]T4-AMINO-4-DEOXYCHORISMATE LYASE


","BeTs to 3 clades of COG0115COG name: Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyaseFunctional Class: E,HThe phylogenetic pattern of COG0115 is amt-YQvCEBRhUJ------xNumber of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","Residues 5-183 are 36% similar to a (HYPOTHETICAL PROTEIN HI1169) protein domain (PD104370) which is seen in YB69_HAEIN.","","","","","","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","","","","","Wed Jan 31 11:15:26 2001","Wed Jan 31 09:20:48 2001","Wed Jan 31 09:20:48 2001","","Wed Jun 13 16:40:22 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Jun 13 16:40:22 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Jun 13 16:40:22 MDT 2001","","","","","","","1","","","PG1023" "PG0913","1086822","1085812","1011","ATGACAAAGGCTTACGGGGCTGGCTGCCCCTTTCAAATGAAGGCAGAGGAAACGATCAGGCGAATGGATGAATCCGGCCGGTGCGGACGATCATTTCTGTTTGCCATAGACTTTGAGATGGATGAGGGGATCTTCATATCGGAACCGCTGAATCAAAAAGAAATCCTATTCGACGTACGAGGACAAGGGAATGCACCCACAGCTACCGATACGAATGAGAGCAAGGCTCCCGTGACTTTTATCCCCCACCCCGAATCATTGGAGACCTATCGACATCGTTTCGATCGGATCCGCACAGCCCTGATGCGTGGCGATAGCTTCTTGGCCAATCTCACCATTGCTACGCCCATTGAGATGAATATCTCGCTTGAGGAGGTATTCAGTCGCAGTCGCGCCTCATACAAGCTCTTGATTCCCGGACGACTGGTTTGTTTCAGTCCGGAACGATTTGTCAAAATAGAGAATGGGCAAATTTCCACCAACCCGATGAAAGGGACCATAGATGCTTCCCTGCCGGATGCCGCCGGCCGTCTACTGTCCGACTATAAAGAAACGGCCGAACATCGCACCATCGTAGATCTGTTACGCAACGACCTGAACCGAGTCAGTCACCACGTACGCGTCTCTCGCTTTCGCTATCTGGATGAACTCCACACGAACAAGGGACGACTGCTGCAAATGAGTTCGGAGATCACAGGCACACTCCCTGCGGAAAAAGAAAAGCGTTTCGGCTCCATTATTCAAGAGCTACTACCCGCCGGCTCCATCAGCGGAGCACCCAAAGAGGCCACTATCGAAGCTATACGGGAGGCAGAGGGGCAGCAACGAGGCTTCTACACAGGTGTTTTCGGTTATTTCGACGGTAGCAGCTTCGATTCGGCTGTAATGATTCGCTACATCGAACAGCTTCCCGATGGCCATTACCTTTTTCGCAGTGGCGGCGGCATTACCATCAACAGCCGCTGTGACGACGAATACCGCGAAACACAACAAAAGGTATATCTGCCATTC","6.20","-3.47","38035","MTKAYGAGCPFQMKAEETIRRMDESGRCGRSFLFAIDFEMDEGIFISEPLNQKEILFDVRGQGNAPTATDTNESKAPVTFIPHPESLETYRHRFDRIRTALMRGDSFLANLTIATPIEMNISLEEVFSRSRASYKLLIPGRLVCFSPERFVKIENGQISTNPMKGTIDASLPDAAGRLLSDYKETAEHRTIVDLLRNDLNRVSHHVRVSRFRYLDELHTNKGRLLQMSSEITGTLPAEKEKRFGSIIQELLPAGSISGAPKEATIEAIREAEGQQRGFYTGVFGYFDGSSFDSAVMIRYIEQLPDGHYLFRSGGGITINSRCDDEYRETQQKVYLPF","1086822 1085812","NO TIGR ID corresponds to this gene.","possible para-aminobenzoate synthase component I","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 12-336 are 45% similar to gb|AAC22834.1| H. influenzae predicted coding region HI1170 of Haemophilus influenzae Rd, residues 82-328 are 33% similar to gb|AAF42299.1| para-aminobenzoate synthetase component I/4-amino-4-deoxychorismate lyase, putative of Neisseria meningitidis MC58, residues 112-333 are 33% similar to gb|AAB89646.1| anthranilate synthase component I (trpE) of Archaeoglobus fulgidus.","
InterPro
IPR005801
Domain
Anthranilate synthase component I and chorismate binding protein
PD000779\"[111-328]TQ8A9P8_BACTN_Q8A9P8;
PR00095\"[176-189]T\"[190-203]T\"[274-288]T\"[288-302]TANTSNTHASEI
PF00425\"[86-335]TChorismate_bind
noIPR
unintegrated
unintegrated
G3DSA:3.60.120.10\"[75-336]Tno description
PTHR11236\"[86-333]TAMINOBENZOATE/ANTHRANILATE SYNTHASE
PTHR11236:SF4\"[86-333]Tgb def: Putative para-aminobenzoate synthase component I


","BeTs to 11 clades of COG0147COG name: Anthranilate/para-aminobenzoate synthases component IIFunctional Class: E,HThe phylogenetic pattern of COG0147 is amt-YQvCEBRHUJ-------Number of proteins in this genome belonging to this COG is 1","***** PR00095 (Anthranilate synthase component I signature) with a combined E-value of 1.5e-13. PR00095A 176-189 PR00095B 190-203 PR00095C 274-288","Residues 90-332 are 51% similar to a (SYNTHASE ANTHRANILATE BIOSYNTHESIS LYASE COMPONENT I) protein domain (PD000779) which is seen in Q57527_HAEIN.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri May 4 16:03:17 MDT 2001","Wed Jan 31 10:40:41 2001","Wed Jan 31 10:40:41 2001","Mon Apr 2 12:28:16 MDT 2001","Mon Apr 2 12:28:16 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 45-332 are 25% similar to PG1334, a predicted isochorismate synthase protein.","Mon Apr 2 12:28:16 MDT 2001","Mon Apr 2 12:28:16 MDT 2001","-48% similar to PDB:1K0E THE CRYSTAL STRUCTURE OF AMINODEOXYCHORISMATE SYNTHASE FROM FORMATE GROWN CRYSTALS (E_value = 1.1E_20);-48% similar to PDB:1K0G THE CRYSTAL STRUCTURE OF AMINODEOXYCHORISMATE SYNTHASE FROM PHOSPHATE GROWN CRYSTALS (E_value = 1.1E_20);-49% similar to PDB:1I7Q ANTHRANILATE SYNTHASE FROM S. MARCESCENS (E_value = 2.9E_13);-49% similar to PDB:1I7S ANTHRANILATE SYNTHASE FROM SERRATIA MARCESCENS IN COMPLEX WITH ITS END PRODUCT INHIBITOR L-TRYPTOPHAN (E_value = 2.9E_13);-48% similar to PDB:1QDL THE CRYSTAL STRUCTURE OF ANTHRANILATE SYNTHASE FROM SULFOLOBUS SOLFATARICUS (E_value = 4.1E_12);","","","Residues 86 to 335 (E-value = 2.8e-19) place PG0913 in the Chorismate_bind family which is described as chorismate binding enzyme (PF00425)","Mon Apr 2 12:28:16 MDT 2001","","","","","","","1","","","" "PG0914","1087283","1088368","1086","ATGATACAGAGAATAGATATCACTGGCTATAAGTCAATCAAAGATCAGTCCATAAAGCTCTCTCCAATCAATGTGTTGATTGGGGGGAATGGGATTGGTAAAAGCAACTTTATTTCTGCATTTAGCCTGATCAATAGTTTGTATGAACAGAGATTACAGAGCTACATCATAGAGCGAGGTGGGGCGGATACTTTCCTATATATGGGGCGGAAGATGACCGATCGTATTAAGTTGGATATCTACTTCGGCGAGCGAAATCAGGAAGCTATCAATCGGTTTATTGCAAGCCTAAAAATAGCAGAAAATCGCTTGTATGTGGAGTCTCTTAGCACTGCATTCAACAATGGGGTATGGCACGAACGTGAATATGAGCGCGATGTAGATGAGTCTTCTTTTAAACATTACAATTGGGGACAGGCATATTTTGTTAATGAACTGATCCAAGCATTGAAGATCTACCACTTCCATGACACAGGAAATCAATCCCCTATGAAAGCACTATGTCGTGTAGATGACAATCATAGCCTTAGGCGTGACGGTGCCAATATCGCAGCTTTCTTGTATTACCTCCAACAAAAGCACCCGAAGCACTTCTATCGCATAGAGCGTACGGTTTGCTCTGTTGCTCCATTCTTTGAGGGTTTTAACCTTATGCCCAATCGTCTTAATGAGAGTACGATCCAGCTAGAATGGAAGCAAAAAGGGGCGGAGGATGTCTATTTCAACGCCTATCAGCTATCGGACGGCACGCTTCGCTTCATCTGTCTTGCTACGCTTTTGCTTCAGCCTGAGCCACCTCGGAGCATTATTATTGATGAGCCTGAGCTTGGCCTACACCCTATGGCGATCAATAAACTCGCAGCTCTTATCAAGAGTGTTTCTCTGCAGTCGCAGGTGATCATCACAACCCAGTCTGTAACCCTAGTAGACAACTTTGCTCCGGAGGATATCATCGTCGTTGATCAGTCCCACTACGCGACAACCTTTAGGCGTATGTCTACGGAAGAACTTACTGCTTGGCTGGAAGATTATAGTCTTGGAGAAATTTGGGAGAAAAATATCATTGGTGGACAACCTTGGGCTAAG","6.40","-2.95","41687","MIQRIDITGYKSIKDQSIKLSPINVLIGGNGIGKSNFISAFSLINSLYEQRLQSYIIERGGADTFLYMGRKMTDRIKLDIYFGERNQEAINRFIASLKIAENRLYVESLSTAFNNGVWHEREYERDVDESSFKHYNWGQAYFVNELIQALKIYHFHDTGNQSPMKALCRVDDNHSLRRDGANIAAFLYYLQQKHPKHFYRIERTVCSVAPFFEGFNLMPNRLNESTIQLEWKQKGAEDVYFNAYQLSDGTLRFICLATLLLQPEPPRSIIIDEPELGLHPMAINKLAALIKSVSLQSQVIITTQSVTLVDNFAPEDIIVVDQSHYATTFRRMSTEELTAWLEDYSLGEIWEKNIIGGQPWAK","1087235 1088368","First 60 and middle ~75 amino acids are only hits in gapped BLAST. TIGR ID: PG1025","hypothetical protein","Cytoplasm","Two weak hits in gapped BLAST; e.g. residues 1-71 are 39% similar to gb|AAG45955.1|AF282921_1 putative RecF protein of Shigella flexneri, residues 245-309 are 38% similar to gb|AAG04176.1|AE004513_8 hypothetical protein.","
InterPro
IPR003395
Domain
SMC protein, N-terminal
PF02463\"[1-328]TSMC_N
InterPro
IPR014555
Family
RecF like
PIRSF029347\"[1-345]TRecF
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[1-348]TG3DSA:3.40.50.300
SSF52540\"[2-325]TSSF52540


","BeTs to 3 clades of COG1122COG name: ABC-type cobalt transport system, ATPase componentFunctional Class: PThe phylogenetic pattern of COG1122 is AMTK--VC-Brh--GP-l---Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Wed Jun 13 16:23:11 MDT 2001","","Wed Jun 13 16:23:11 MDT 2001","Wed Jun 13 16:23:11 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Jun 13 16:23:11 MDT 2001","Wed Jun 13 16:23:11 MDT 2001","","Mon Jun 18 14:17:29 MDT 2001","Wed Jan 31 11:12:31 2001","Wed Jun 13 16:36:39 MDT 2001","Wed Jan 31 11:12:31 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Jun 13 16:23:11 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jun 18 14:17:29 MDT 2001","34540766","","","","","","1","","","PG1025" "PG0915","1088319","1089047","729","TTGGAGAAATTTGGGAGAAAAATATCATTGGTGGACAACCTTGGGCTAAGTAGTGAGATGGGGAATATGAAAAAACGGCTTGTTTTTATTGTCGAGGGAGATACAGAGGTTGCCTTTATCCATGAACGTGTGATCCCATACCTAATGAGCAAAGGCTACCGCAATGCGATGAATGCCCAGAAGATCACCACCAATAAATCGCTTCATAAAAAGGGTGGTATAGCCCGCTTCGAATACTTGGAAAATGAAGTTCGAAGCGTAGCAGCCCAAGGAGATATCTTGATTACTACTTTGTTAGACTTCTTCAGGCTACCAACAAATTTTCCTAACTATACTGCGGATAGCCATAAGATTTCGGATATAGAGCGAGGGGTTAGACAAGGTATTGATGGGGTTAATGTTTCGCTTTTCTATCCATATATTCAGCGCCACGAACTAGAGGCACTCATGTACACGAGTATGGATGGGTTTGAGATCGTTTGTGACGAAAAAAGAGAGTTAGATCAGCTGAGAGCAATTGTAGAGGGTTACGATAATCCCGAAGATATCAATTCTGGGGCTGAAACCTCGCCATCTAAGCGCCTTATCAAGATTTTCCCAAAATATGAGAAGGTTCTTTATGGAGAACTGATATTTGAGGCTTTGGAGATTGATGCTATACGAGCTCGATGCCCCCGTTTCAACGATTGGATACAAATCCTTGAGGACGGATTAAAGAAAGGATACTTT","5.80","-3.11","27917","LEKFGRKISLVDNLGLSSEMGNMKKRLVFIVEGDTEVAFIHERVIPYLMSKGYRNAMNAQKITTNKSLHKKGGIARFEYLENEVRSVAAQGDILITTLLDFFRLPTNFPNYTADSHKISDIERGVRQGIDGVNVSLFYPYIQRHELEALMYTSMDGFEIVCDEKRELDQLRAIVEGYDNPEDINSGAETSPSKRLIKIFPKYEKVLYGELIFEALEIDAIRARCPRFNDWIQILEDGLKKGYF","1088346 1089047 [Delay by 129 1180 152 0]","TIGR ID: PG1026","conserved hypothetical protein","Cytoplasm","This sequence corresponds to gi:34397081 in Genbank.Its nearest neighbor in the NR database is gi:37527180 from Photorhabdus luminescens subsp. laumondii TTO1.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Wed Jun 13 16:21:42 MDT 2001","","Wed Jun 13 16:21:42 MDT 2001","Wed Jun 13 16:21:42 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Jun 13 16:21:42 MDT 2001","Wed Jun 13 16:21:42 MDT 2001","","","Fri Mar 4 14:09:15 2005","Fri Mar 4 14:09:15 2005","Wed Jan 31 11:19:58 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Jun 13 16:21:42 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jun 18 14:22:05 MDT 2001","34540767","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Fri Mar 4 14:10:19 2005","","1","","","PG1026" "PG0915.1","1089531","1089292","240","TTGCCGGAGCAGGAAGAGATGACTACCGCTGCCGAGCAAACGAGTAGTACAGAAAAGATTTTCTTAAGCATAGTTTTTCATTGTCAATTGTTGAAACCGGAACAAAGCTACCATTTTTTCTCTGTCTTATTCCATATCCATAAATTCGGAGTCTGTGCAGATCCCGGCTATATGTGCAACGCTGTTTCAAATTTAAGAGTAGGCGTACGATGCCTCCCTGCACGGTGCAGGACACCGGCG","7.30","0.71","9014","LPEQEEMTTAAEQTSSTEKIFLSIVFHCQLLKPEQSYHFFSVLFHIHKFGVCADPGYMCNAVSNLRVGVRCLPARCRTPA","","TIGR ID: PG1027","hypothetical protein","Cytoplasm, Outer membrane","No hits in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Wed Jun 13 16:19:16 MDT 2001","","Wed Jun 13 16:19:16 MDT 2001","Wed Jun 13 16:19:16 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Jun 13 16:19:16 MDT 2001","Wed Jun 13 16:19:16 MDT 2001","","","Wed Jan 31 11:23:26 2001","Wed Jan 31 11:23:26 2001","Wed Jan 31 11:23:26 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Jun 13 16:19:16 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jun 18 14:25:48 MDT 2001","34540768","","","","","","1","","","PG1027" "PG0916","1089461","1091155","1695","ATGCTTAAGAAAATCTTTTCTGTACTACTCGTTTGCTCGGCAGCGGTAGTCATCTCTTCCTGCTCCGGCAAATTACGTCCTGTGACTGCCGATTTGGTAAAGGCTGAGCCACAACCACTCGAAGTCGTGGGAAGCAAAGTGCCTGTGACCGTGAGTATCGCTTTTCCTGCCAAATGGTTCAATAAGAAAGCCGAACTTACAGTGAAGCCTGTGCTGCGCTATGCTACAGGTGAATCATGGGGACCTTCATTCCTTTTTCAGGGAGAAAAAGTACTTGGCAATGAGCGTGTAGTCAGCTATGACAATGGTGGCAATCAGCAGCTCGTATTCTCTTTCCCTTATAAGCCGGCCATGGACAAGAGTGAACTCTTCTTAACCTTCGAAGCCAAAGTAAAAGGGAAGAAAATAAATCTTCCGGATCTCAAAATCGCTGATGGTGTAATCAGTACGGAAGCCTTGGCTTCTGCTCTTAATGCATCGGCGGCAATCGCTCCGGATGCATTCCAGCGCATCATCAAGCAAGCCTATGATGCAAATATCATGTTCCTCATCCAACAGGCACAGATTCGTGCACAAGAAATCAACAAGGGTGAGGTGAAAGACTGGAAAGACTTGGTGGCCAATGCCAAGGATGCTCCCAATCAGGATGTAACGGTGGAGGTACAAGCCTACGCTTCTCCTGATGGCGGTGTGGAGCTGAACGAAAAGCTGTCCGAGCAGCGCGAGAAAAATACGACTACTGCTCTGAAGAAACAATTCCAAAAGAGCAATATCAAGGATGTAGAGATCAATGCACACTATACGGCACAGGACTGGGAAGGCTTCAAGCAGCTTGTGGAGAAAAGCGATATTCAGGACAAGGAACTTGTTCTGCGTGTTCTCTCCATGTATCCGGATCCCGAGCAGCGTGAGCAGGAGATCAAGAATATCTCTACCGTATTCAGACAGCTGGCGGATGATATCCTGCCCCAATTGCGTCGTTCGCGCCTTATCGCCAATGTCGAAATCATAGGTAAGAGCGATGACGAGATCAAACGTCTTGCAGCCCAGAACCCCGGCCGGCTGACCGTGGAGGAGCTGCTCTATAGTGCTACTCTGCTCGAATCTCCTGCTCAAAAGGAAGATATTTACAAGGTGGCTACTCAGATCTATCCGGATGACTATCGTGCTTATAACAATATCGGTATGATGCGTTATCGCAGCGGTGATTTGGAGGGTGCTCGTACTTGGTTCCAAAAGGCTGCAAGCGTGAAGCCCAATGCAGAAACGGATATGAACCTTGGACTATTGGCTCTTAACGAGGGTAATGTAGAGCAGGCTAAGCAGTATTTCGGCTCGGCTGCCAATGTGCCCGAATTGGGCGAAGCTCTTGGTTTGCTCTATCTGCAAGAGGGCAATTATGCCCAGGCTGTAGCGGCTTTCGGTAAGACCGAGAGCAACAATGCTGCCGTGGCCAATATCCTCAATCGCGACTACAACCGAGCACAAGAGATCCTGAATGGGATAAAGAATCCCGATGCTACTACTTATTACCTCATGGCTGTTGTGGCTGCACGTACGAACAACTTGGACGTTGTAATAAATTCGCTCCGTGAATCCATCAGTCTCGATAGCAGTATGATGAAGAAAGCCGCTACGGATCTGGAGTTCGCCAAGTATGCAAACGACGGAGGTTTCAAGTCATTGCTCCGCCAC","5.00","-9.47","62587","MLKKIFSVLLVCSAAVVISSCSGKLRPVTADLVKAEPQPLEVVGSKVPVTVSIAFPAKWFNKKAELTVKPVLRYATGESWGPSFLFQGEKVLGNERVVSYDNGGNQQLVFSFPYKPAMDKSELFLTFEAKVKGKKINLPDLKIADGVISTEALASALNASAAIAPDAFQRIIKQAYDANIMFLIQQAQIRAQEINKGEVKDWKDLVANAKDAPNQDVTVEVQAYASPDGGVELNEKLSEQREKNTTTALKKQFQKSNIKDVEINAHYTAQDWEGFKQLVEKSDIQDKELVLRVLSMYPDPEQREQEIKNISTVFRQLADDILPQLRRSRLIANVEIIGKSDDEIKRLAAQNPGRLTVEELLYSATLLESPAQKEDIYKVATQIYPDDYRAYNNIGMMRYRSGDLEGARTWFQKAASVKPNAETDMNLGLLALNEGNVEQAKQYFGSAANVPELGEALGLLYLQEGNYAQAVAAFGKTESNNAAVANILNRDYNRAQEILNGIKNPDATTYYLMAVVAARTNNLDVVINSLRESISLDSSMMKKAATDLEFAKYANDGGFKSLLRH","1089461 1091155","Veith et al. (2002) identified this protein by two-dimensional gel electrophoresis and peptide mass fingerprinting of outer membranes prepared from strain W50. This protein contains a putative lipoprotein signal sequence. The predicted start was at 1089812, but at Veith's suggestion the start coordinate was moved upstream 351 bp adding 117 aa to the N-terminus of this protein 2/27/2002. * This change causes residue numbering in this annotation to shift. Add 117 for accuracy.May be related to so called \"secondary fimbrial proteins\" such as PG1864, PG1893.TIGR ID: PG1028","probable outer membrane lipoprotein P61","Periplasm","PG0916 is 25% similar to a previously sequenced protein of P. gingivalis in Genbank AAD33939 and 26% similar to Genbank BAA33066. Two weak hits in gapped BLAST; e.g. residues 260-375 are 31% similar to gb|AAG51433.1|AC008153_6 spindly (gibberellin signal transduction protein) of Arabidopsis thaliana, residues 256-359 are 28% similar to gb|AAF55179.1| CG5038 gene product of Drosophila melanogaster.The 117 aa added to the N-terminus do not show similarity to any sequences in GenBank.This sequence is similar to BT2844.","
InterPro
IPR001440
Repeat
Tetratricopeptide TPR_1
PF00515\"[457-476]TTPR_1
InterPro
IPR011990
Domain
Tetratricopeptide-like helical
G3DSA:1.25.40.10\"[374-540]Tno description
InterPro
IPR013026
Domain
Tetratricopeptide region
SM00028\"[388-421]T\"[507-540]TTPR
PS50005\"[388-421]T\"[451-484]T\"[507-540]TTPR
PS50293\"[377-421]T\"[421-454]TTPR_REGION
InterPro
IPR013105
Repeat
Tetratricopeptide TPR_2
PF07719\"[388-421]TTPR_2
noIPR
unintegrated
unintegrated
PTHR23083\"[374-470]TTETRATRICOPEPTIDE REPEAT PROTEIN, TPR
PTHR23083:SF23\"[374-470]TO-GLCNAC TRANSFERASE, P110 SUBUNIT-RELATED
PS51257\"[1-21]TPROKAR_LIPOPROTEIN
signalp\"[1-23]?signal-peptide
tmhmm\"[5-23]?transmembrane_regions


","BeTs to 9 clades of COG0457COG name: TPR-repeat-containing proteinsFunctional Class: RThe phylogenetic pattern of COG0457 is AMTKYQVCEB-HUJ--OLINXNumber of proteins in this genome belonging to this COG is 21","No significant hit to the Blocks database.","Residues 107-353 are 26% similar to a (FIMBRILIN) protein domain (PD142733) which is seen in O07074_PORGI.","","Wed Feb 27 15:10:13 2002","","Wed Feb 27 15:10:13 2002","Wed Feb 27 15:10:13 2002","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Feb 27 15:10:13 2002","Wed Feb 27 15:10:13 2002","","Fri Dec 19 10:29:00 2003","Mon Feb 11 12:17:30 2002","Fri Dec 19 10:29:00 2003","Thu Feb 7 15:58:01 2002","","Mon Jun 18 14:29:13 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 56-368 are 25% similar to PG1893, a predicted immunoreactive 53 kD antigen PG123. Residues 107-353 are 26% similar to PG1864, a hypothetical protein.","Wed Jun 13 16:18:15 MDT 2001","Mon Feb 12 14:08:12 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Mar 4 17:33:34 2002","34540769","","See Fimbrillins
Veith,P., Talbo,G., Slakeski,N., Dashper,S., Moore,C.,Paolini,R., Reynolds,E., Major outer membrane proteins and proteolytic processing of RgpA, and Kgp of Porphyromonas gingivalis W50, Biochem J. 2002 (in press).","","Fri Dec 19 10:29:00 2003","","1","","","PG1028" "PG0917","1091542","1092879","1338","ATGAAAACAACAGTTCAACAAATTATTCTGTGCCTGGCTTTAATGATGTCAGGTGTATTGGGCGGAAACGCACAGAGCTTTTGGGAAGAAATAGCTCCTCCTTTTATCAGTAATGAGCCTAACGTCAAGTATATAATTCCCAATATGGGGATTGATTCAAAGGGAACAATCTATGTAACCGTGACAAAAAGGATTCAGCAGGGAGCAAATTATACTTCTGAGCAATTGGGTATGTACTATCGACCATTAGGTGATAATGAACAGTGGTGGAAACATGATCCGTATTTTGATGACAAGATAGTTGCGGATATTCAGACAGATGCATATGGCAGAGTTTATGTATGTACGACTTCTTCTCGAGATCAAGAGTATCAACTTTATATAAACGAGCAGAACGAATGGAGGTGTATATTCAAAACTTCTGTGTCTACATATGAGCATGGTATGGCTGTTTTTCGCTCTTCGACAGGGGTGACTTATATAGGTACCAGGCATCACATCTTCGCATCAGGTGTAAATGATTTCGAGTTCAACACTATCTATGAAGACTCTACACCTATGAGCTGTCGCTTTGCAGAGGCTACGAATAGTGGCACCATCTATCTGGCATTGATGCATGAAACCACAATGTCTACGACTATCCTTACTTATCAAAACGGTGAGTTCGTCGATATCTCGGAAAGTGAATTGAGTAACTCGATTATTGCATCCATGTGCTCTAATAAAGAAGGTGATATAATAGCTCTTGTTACTTCATATACAGGATTTATGAGTGGAACCCTTGCGATCAGAAAAGCAGATGAAGGCAAATGGCAACTTGTTGGCGGAGATATACAGAATGCGATCGTTCAAAATATATGCATGATGGACGACAACAAGATTGCTTGTGAAGTCTTCGGGACTCCTAACGGAGTAGATGGTCGGACAAGGGTTTGTGTTTCTGACGCATCTGTCTTTGATTTTGAGTGGTATGAAGATGAAATATACGGAGGCCTGATATTTGACACTTTCTTCTATAGCCCTTGGGACAAACTTCTTTATGCGAAATTTGGTGGGATTATGCTCAGGAGTAAAGAGTCTTTTATAACCTCTTTCATTTCTCCGACAGTTGTACAAGGAGTGGATGTCTATACTTTGGCCGGGAAGATAAGGATCGAAAGTGAAACTCCGGTGTCTGAGGTGTTGCTTTTCGACCTGGCTGGCAGGATGGTACTTCGGCAAACCATTGATAATAAAATCTATTCGGACATAGATACTAACGGACTAAAGCGAAGCGGTATTTACGTAGTCTCGGTGCGGCTCTCTTCCGGACAGGTATTCAGTCATAAGGTGCAGGTA","4.60","-16.90","50109","MKTTVQQIILCLALMMSGVLGGNAQSFWEEIAPPFISNEPNVKYIIPNMGIDSKGTIYVTVTKRIQQGANYTSEQLGMYYRPLGDNEQWWKHDPYFDDKIVADIQTDAYGRVYVCTTSSRDQEYQLYINEQNEWRCIFKTSVSTYEHGMAVFRSSTGVTYIGTRHHIFASGVNDFEFNTIYEDSTPMSCRFAEATNSGTIYLALMHETTMSTTILTYQNGEFVDISESELSNSIIASMCSNKEGDIIALVTSYTGFMSGTLAIRKADEGKWQLVGGDIQNAIVQNICMMDDNKIACEVFGTPNGVDGRTRVCVSDASVFDFEWYEDEIYGGLIFDTFFYSPWDKLLYAKFGGIMLRSKESFITSFISPTVVQGVDVYTLAGKIRIESETPVSEVLLFDLAGRMVLRQTIDNKIYSDIDTNGLKRSGIYVVSVRLSSGQVFSHKVQV","1091542 1092879","TIGR ID: PG1030","hypothetical protein","Outer membrane, Cytoplasm, Extracellular","No hits found in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-21]?signal-peptide
tmhmm\"[10-28]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Jan 31 13:35:07 2001","Thu Feb 22 08:43:22 MST 2001","Wed Jan 31 13:35:07 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 22 08:43:22 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Feb 22 08:43:22 MST 2001","34540771","","","","","","1","","","PG1030" "PG0918","1094258","1093176","1083","ATGGCATACCAATCCAAGAATACCGATGAGCATGTAACATTTGCAGACGCACTCCTTTCAAAGCGTTATCGCAAAGCACAAAACGACTTCCTCAATCAGGTTGACAGGCTTATCGATTGGCGTCCGATCAGGACGCTGATCAACAAGAAATACACCAAGCGACAAAATGCCATCGGCGCCCCGGCTTATGACGTGATTCTCTTATTCAAGATGTTGCTTTTGGAGACATGGTACAACCTCAGTGATTGTGCTTTGGAGGAGCGCATCAATGATTCAATCACCTTTTCCCGATTCTTGGGGCTGAAGATGGAAGAGGTTTCTCCCGACCACAGTACCATCAGTCGATTTCGTTCGGCACTGACAGAGTTGGGTCTCATGGACAAACTATTGGCGCAGTTTAACAAACAACTTTCCCGCCATCACATTTCGGTCAGGGAAGGGGTGCTTGTCGATGCAAGCCTTGTGGAGACGCCGCATAAACCCAACGGAAGCATTACGATTGAAGTCGCAGACGACAGAGAAGACAATCGGAGCGAGGAGGAAAAAGAGGCAGAGGAGGATTATCAAAAACAGGTTGTCCGTCAGCGTAAAGGGACGGATGAAGAAGCCCGTTGGGTTTACAAACAAAAGCGTTATCACTACGGATACAAAAAGCATTGTCTGACCAATGTTCAAGGCATTGTTCAAAAGGTGATAACGACTGCAGCGAACCGCAGTGACACGAAGGAGTTTATTGCGCTATTGCAGGGTGCAAACATACCTCAAGGCTCAGCCGTCTTGGCGGACAAAGGATATGCTTGCGGGGAAAATCGTTCCTACCTGCAAACCCATCACCTTCAAGACGGCATCATGCACAAGGCACAACGCAACAGGGCATTGACCGAGGAAGAGAAGCAACGAAACAAAGCAATCAGTCGGATACGGAGCACCATCGAACGCACCTTTGGCAGTATTCGCCGGTGGTTTCATGGCGGACGATGTCGATACCGGGGACTTGCCAAGACCCATACTCAAAACATTCTTGAAAGCATCGCCTTTAATTTATACAGAACCCCGGGGATAATTATGTCCTCATTTGTAGGA","10.20","14.72","41742","MAYQSKNTDEHVTFADALLSKRYRKAQNDFLNQVDRLIDWRPIRTLINKKYTKRQNAIGAPAYDVILLFKMLLLETWYNLSDCALEERINDSITFSRFLGLKMEEVSPDHSTISRFRSALTELGLMDKLLAQFNKQLSRHHISVREGVLVDASLVETPHKPNGSITIEVADDREDNRSEEEKEAEEDYQKQVVRQRKGTDEEARWVYKQKRYHYGYKKHCLTNVQGIVQKVITTAANRSDTKEFIALLQGANIPQGSAVLADKGYACGENRSYLQTHHLQDGIMHKAQRNRALTEEEKQRNKAISRIRSTIERTFGSIRRWFHGGRCRYRGLAKTHTQNILESIAFNLYRTPGIIMSSFVG","1094258 1093176","Member of the IS5 family of elements. A full-length ISPg1 element.TIGR ID: PG1031","ISPg1 transposase (IS1106-related transposase)","Cytoplasm","PG0918 is equivalent to the previously sequenced AJ130872 in GenBANK. See also AB015879. Residues 31-350 are 34% similar to an IS1106 transposase from N.meningitidis (AE002488).","
InterPro
IPR002559
Domain
Transposase, IS4-like
PF01609\"[147-348]TTransposase_11


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 157-302 are 87% similar to a (TRANSPOSASE PLASMID PROTEIN ELEMENT) protein domain (PD004652) which is seen in Q9ZA61_PORGI.Residues 12-109 are identical to a (TRANSPOSASE PROTEIN INSERTION ELEMENT) protein domain (PD007264) which is seen in Q9ZAD0_PORGI.Residues 303-361 are identical to a (TRANSPOSASE ORF7 INSERTION SEQUENCE IS1126-LIKE GENE) protein domain (PD187845) which is seen in Q9ZA61_PORGI.Residues 110-156 are identical to a (TRANSPOSASE ORF7 INSERTION SEQUENCE IS1126-LIKE GENE) protein domain (PD187846) which is seen in Q9ZA61_PORGI.","","Mon Mar 27 15:32:53 MST 2000","Mon Mar 27 15:32:53 MST 2000","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Fri Feb 16 11:21:46 MST 2001","Mon Feb 12 15:39:27 MST 2001","Wed Jan 3 13:06:40 MST 2001","Wed Jan 3 12:03:23 2001","","Mon Feb 12 15:39:27 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG0918 is virtually identical to PG1267, PG0169, PG1050, PG1062, PG0740, PG1662, PG1422, PG0420, PG0499, and PG1099.Partial similarities exist to PG0732, PG0842, PG1607, PG0731, PG0884, PG1184, PG1087, PG0763, PG1755, PG0686, PG0756, PG1798, PG1230, PG1919, PG0044, PG0689, PG1215, PG1665, PG0839, PG1895, PG0883, PG11231, PG0730, PG1159 and PG1608.","Fri Feb 16 11:21:46 MST 2001","Mon Feb 12 15:39:27 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 147 to 348 (E-value = 2.2e-40) place PG0918 in the Transposase_11 family which is described as Transposase DDE domain (PF01609)","","34540772","","Hanley,S.A., Aduse-Opoku,J. and Curtis,M.A.A 55-kilodalton immunodominant antigen of Porphyromonas gingivalisW50 has arisen via horizontal gene transferInfect. Immun. 67 (3), 1157-1171 (1999)Maley,J. and Roberts,I.S.Characterisation of IS1126 from Porphyromonas gingivalis W83: a new member of the IS4 family of insertion sequence elementsMicrobiol. Lett. 123 (1-2), 219-224 (1994)Shibata,Y., Hayakawa,M., Takiguchi,H., Shiroza,T. and Abiko,Y.Determination and characterization of the hemagglutinin-associatedshort motifs found in Porphyromonas gingivalis multiple geneproducts. J. Biol. Chem. 274 (8), 5012-5020 (1999)","Knight,A.I., Ni,H., Cartwright,K.A. and McFadden,J.J.Identification and characterization of a novel insertion sequence, IS1106, downstream of the porA gene in B15 Neisseria meningitidis.Mol. Microbiol. 6 (11), 1565-1573 (1992)","Mon Feb 12 15:39:27 MST 2001","Mon Feb 12 15:39:27 MST 2001","1","","","PG1031" "PG0919","1094475","1095374","900","ATGAAGACAAATATAGTTGATGTTTTTTGCATCATAGATGATTTCTCCAAGCTTTTTGATGAAGCAATCAAGAAAAAGACCCTCGAAGAGGCAGACAAAAAACGCAGGAATAGAAAGTTTAAGATGTCGGACAGTGAGGTCATGACCATCCTGATCCTGTTTCATCTGTCAAGATACCGAGATTTGAAAGCTTTTTATCTTCAATACATTACCCATTCTTGTCGATCCGAGTTTCCACATCTTGTCTCTTATAATCGCTTTGTGGAGCTGCAAAGCAGGGTAGGTTTCAAGCTGATAGCATTTCTCAATATGTGTTGTTTGGGTCAATGTACAGGCATCTCTTTCATCGATTCCACCCCACTGAAGGCTTGTCATATCAAACGAGCTCGTGGGCATAGGACAATGAGGGGATGGGCTCAAAAAGGCAAAAGCACCATGGGTTGGTTTTATGGATTCAAGCTACATATTGTTATCAACGACAGGGGTGAAATTATCAACTATCAAATCACACCGGGCAATTGTGATGACAGAGAACCTCTGAAAGACGGAACATTCACCAAGAATCTTTTTGGCAAACTCATTGCCGATAGAGGCTACATTTCCCAAAACCTTTTTGACCGGCTCTTTGTCGATGACATCCACATGATAACCAAAATCAAAAAGAACATGAAGAACTCCCTGATGCATCTATATGACAAAGTTTTATTGAGAAAGAGAGCCTTGATCGAAACGGTCAATGATATACTCAAAAATCTCTGCCGGATAGAGCACACGAGACATCGCAGTGTCAACAATTTTGTCACCAACCTGATCTCCGGTATCATCGCTTACAACATCCTGCCTAAAAAGCCTGAACTCAATATTGAAATCATCAGAAACCCTAACTTTCCTATTTCCGCT","10.40","22.02","35076","MKTNIVDVFCIIDDFSKLFDEAIKKKTLEEADKKRRNRKFKMSDSEVMTILILFHLSRYRDLKAFYLQYITHSCRSEFPHLVSYNRFVELQSRVGFKLIAFLNMCCLGQCTGISFIDSTPLKACHIKRARGHRTMRGWAQKGKSTMGWFYGFKLHIVINDRGEIINYQITPGNCDDREPLKDGTFTKNLFGKLIADRGYISQNLFDRLFVDDIHMITKIKKNMKNSLMHLYDKVLLRKRALIETVNDILKNLCRIEHTRHRSVNNFVTNLISGIIAYNILPKKPELNIEIIRNPNFPISA","1094475 1095374","TIGR ID: PG1032","ISPg3 (IS195) transposase","Cytoplasm","PG0919 is equivalent to the previously sequenced gb|AAC26596.1, a predicted IS195 transposase. Residues 75-286 are 52% similar to a transposase sequence from Pasteurella multocida (Y15510). ","
InterPro
IPR002559
Domain
Transposase, IS4-like
PF01609\"[113-279]TTransposase_11
InterPro
IPR012337
Domain
Polynucleotidyl transferase, Ribonuclease H fold
SSF53098\"[193-280]TRNaseH_fold


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 212-286 are 96% similar to a (PROTEASE PUTATIVE TRANSPOSASE PLASMID) protein domain (PD190030) which is seen in O87010_PORGI.Residues 135-208 are identical to a (TRANSPOSASE PLASMID PROTEIN ELEMENT) protein domain (PD004652) which is seen in O87010_PORGI.Residues 75-133 are 98% similar to a (PROTEASE PUTATIVE TRANSPOSASE PLASMID) protein domain (PD190029) which is seen in O87010_PORGI.Residues 1-74 are 98% similar to a (PUTATIVE PROTEASE PROTEASE) protein domain (PD203593) which is seen in O87010_PORGI.Residues 116-280 are 30% similar to a (HYPOTHETICAL 20.1 KD PROTEIN) protein domain (PD207068) which is seen in Q06444_BACST.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Feb 8 15:42:35 MST 2001","Thu Feb 8 16:01:28 MST 2001","Wed Jan 31 14:26:30 2001","","Fri Feb 16 16:19:51 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG0919 is identical to PG0718, PG0236, PG0178 and PG1115, predicted ISPg3 transposases. PG0919 is similar to fragments of PG1663, PG1328, PG1660, PG0273.","Thu Feb 8 15:42:35 MST 2001","Fri Feb 16 16:19:51 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 113 to 279 (E-value = 5.3e-36) place PG0919 in the Transposase_11 family which is described as Transposase DDE domain (PF01609)","","34540773","","Lewis JP, Macrina FL, IS195, an insertion sequence-like element associated with protease genes in Porphyromonas gingivalis. Infect Immun 1998 Jul;66(7):3035-42, PubMed: 9632563.","Kehrenberg C, Werckenthin C, Schwarz S, Tn5706, a transposon-like element from Pasteurella multocida mediating tetracycline resistance. Antimicrob Agents Chemother 1998 Aug;42(8):2116-8, PubMed: 9687418.","Thu Feb 8 15:42:35 MST 2001","Thu Feb 8 15:42:35 MST 2001","1","","","PG1032" "PG0920","1095540","1096283","744","ATGAACAATAAAACTCTGCAACAGATAGGAGAGTACACAAAATTGATGCAGCGGACATTCTCTCTGCCTAACAGGTGGAGGATGTCATTCAGGGAATTGATTAAGGAGATAGACAAGCTCGGAGTGGATTCGGTTTGGATCGTAATTATCATTTCGTTCTTCATCGGAGCCGTTATCACTATCCAGCTATCTCTGAATATGACCTCTCCGCTCATTCCGCGCTTTACGATAGGTTATTCCACACGTGAGATCATTCTGTTGGAGTTTTCTTCCACGGTTATGTGTCTCATTCTGGCCGGTAAGGTGGGGTCGAGTATTGCCTCCGAATTGGGAACCATGCGTGTGACTGAGCAGATCGATGCTATGGAGGTGATGGGTGTGAACTCGGCCAATTATCTGATCCTGCCTAAAATCATCGGATTCATGCTGTTCGTTCCGGTTCTGAGTATAATCAGCATGTCCACGGGTATTGTCGGTGGTTATCTGGCCTGTTCGTTGGTGCCGAATTTGCCTCGGAGCGACTTTGAGTACGGTTTGCAGCTTTTCTTTTCCCCTTATAATGTGTTTTACTCCATTATCAAGTCGGTGGCCTATGCTTTCATCATATCGAGCGTGGCCGGTTACTACGGCTATACGGTGAAAGGTGGGGCATTGCAGGTGGGGAAAGCAAGTACCAACGCTGTGGTTCAGTGCAGTATATTGGTGCTTGTGGCGGATTTACTCCTCACGAATTTATTGCTTGCG","8.80","2.85","27261","MNNKTLQQIGEYTKLMQRTFSLPNRWRMSFRELIKEIDKLGVDSVWIVIIISFFIGAVITIQLSLNMTSPLIPRFTIGYSTREIILLEFSSTVMCLILAGKVGSSIASELGTMRVTEQIDAMEVMGVNSANYLILPKIIGFMLFVPVLSIISMSTGIVGGYLACSLVPNLPRSDFEYGLQLFFSPYNVFYSIIKSVAYAFIISSVAGYYGYTVKGGALQVGKASTNAVVQCSILVLVADLLLTNLLLA","1095540 1096283","See ABC Transporters Analysis.TIGR ID: PG1033","conserved hypothetical protein/possible ABC element with MSD domain","Inner membrane, Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 75-229 are 34% similar to dbj|BAA18161.1| hypothetical protein of Synechocystis sp., residues 74-233 are 35% similar to pir||G71718 hypothetical protein of Rickettsia prowazekii, residues 76-229 are 34% similar to pir||S74989 hypothetical protein slr1045 of Synechocystis sp. (strain PCC 6803). ","
InterPro
IPR003453
Domain
Protein of unknown function DUF140
PF02405\"[2-247]TDUF140


","BeTs to 6 clades of COG0767COG name: Uncharacterized BCR (predicted membrane protein), YrbE familyFunctional Class: SThe phylogenetic pattern of COG0767 is -----Q-Ce-Rhuj------xNumber of proteins in this genome belonging to this COG is 1","***** BP04289 (PROTEIN TRANSMEMBRANE INTERGENIC REGION MURA-R) with a combined E-value of 2.4e-14. BP04289B 73-116 BP04289C 128-177 BP04289D 180-228","Residues 126-223 are 24% similar to a (PROTEIN) protein domain (PD015926) which is seen in O07790_MYCTU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Fri Jun 15 23:23:58 MDT 2001","Sat Jun 2 17:36:22 MDT 2001","Wed Jan 31 14:50:46 2001","Wed Jan 31 14:50:46 2001","Sat Jun 2 17:36:22 MDT 2001","Sat Jun 2 17:36:22 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Sat Jun 2 17:36:22 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 2 to 247 (E-value = 6.3e-49) place PG0920 in the DUF140 family which is described as Domain of unknown function DUF140 (PF02405)","Sat Jun 2 17:36:22 MDT 2001","34540774","","","","","","1","","","PG1033" "PG0921","1096305","1097036","732","ATGATCGAAGTCAGAGAAGTCAGTAAGCAGTTTGAAGACAAGAAAGTACTCAACAATATCTCGGCGACATTCGAGACGGGCAAAACCAATCTGATCATCGGACGCAGCGGAGCGGGTAAGACCGTCCTGCTGAAGTGCATCATCGGGCTTATTGCTCCTACATCGGGAGAGGTATTGTATGATGGTCGAGATATTACGATTATGAGTGAGAGTGAGCTGAAAATTCTGCGGCGCGAAGTCGGTATGCTTTTTCAGGGTTCTGCGCTCTTCGACAGTATGACTGTCATGGAGAACGTTATGTTCCCGATGAATATGTTTTCGAGCGATAAGCCGGCAGTCCGTCGAGAGAGGGCTAAGTATCTATTGCATCGGGTGGGGCTTTCCGATGCCAGACATAAGTATCCCAGCGAAATTAGTGGCGGTATGATGAAACGGGCTGCCATTGCCCGTGCGATTGCTTTGGGGCCGAAGTATCTCTTTTGTGACGAGCCTAACTCCGGTTTGGATCCGAAGACTTCGCTCGTAATAGACGATCTTATACATAGTCTTACACAAGAGCATGGTATTACCACAGTAGTCAATACTCATGACATGAACTCCGTGAAGACAATCGGGGACAAGATCATTTACATCCGTCATGGCAGTAAGGAGTGGGAAGGATCGAGTGCTACGCTGAACTCTTCGGATTGTACGTCGCTCAAGAACTTCGTCTTTGCCAAGACAATGGAATAC","8.40","3.31","27074","MIEVREVSKQFEDKKVLNNISATFETGKTNLIIGRSGAGKTVLLKCIIGLIAPTSGEVLYDGRDITIMSESELKILRREVGMLFQGSALFDSMTVMENVMFPMNMFSSDKPAVRRERAKYLLHRVGLSDARHKYPSEISGGMMKRAAIARAIALGPKYLFCDEPNSGLDPKTSLVIDDLIHSLTQEHGITTVVNTHDMNSVKTIGDKIIYIRHGSKEWEGSSATLNSSDCTSLKNFVFAKTMEY","1096305 1097036","See ABC Transporters Analysis.TIGR ID: PG1034","ABC transporter (ATP-binding protein ABC)","Cytoplasm, Inner membrane","This sequence is orthologous to CT201, CT202 and CT130.Numerous significant hits in gapped BLAST; e.g. residues 2-237 are 38% similar to pir||H71718 probable ribonucleotide transport ATP-binding protein mkl of Rickettsia prowazekii, residues 1-233 are 38% similar to gb|AAC22280.1| ABC transporter, ATP-binding protein of Haemophilus influenzae Rd, residues 2-237 are 36% similar to emb|CAB83778.1| putative ABC transport ATP-binding protein.","
InterPro
IPR003439
Domain
ABC transporter related
PD000006\"[137-180]TABC_transporter
PF00005\"[27-214]TABC_tran
PS00211\"[138-152]?ABC_TRANSPORTER_1
PS50893\"[2-238]TABC_TRANSPORTER_2
InterPro
IPR003593
Domain
AAA+ ATPase, core
SM00382\"[26-215]TAAA
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[1-241]TG3DSA:3.40.50.300
PTHR19222\"[2-228]TPTHR19222
PTHR19222:SF52\"[2-228]TPTHR19222:SF52
SSF52540\"[1-239]TSSF52540


","BeTs to 5 clades of COG1127COG name: Uncharacterized ABC-type transport system, ATPase componentFunctional Class: RThe phylogenetic pattern of COG1127 is -----Q-Ce-rhuj------xNumber of proteins in this genome belonging to this COG is 1","***** IPB001617 (ABC transporters family) with a combined E-value of 1.2e-10. IPB001617A 32-47 IPB001617B 139-150","Residues 17-68 are 46% similar to a (ATP-BINDING TRANSPORT PROTEIN TRANSPORTER ABC) protein domain (PD000005) which is seen in YBBL_ECOLI.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Fri Jun 15 23:23:06 MDT 2001","Wed Mar 14 15:09:16 MST 2001","Thu Feb 8 09:01:50 MST 2001","Wed Feb 7 17:25:47 MST 2001","Fri Mar 2 15:02:32 2001","Mon Feb 12 14:37:21 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1-235 are 30% similar to PG1917, a predicted cell-division ATP-binding protein ftsE. Similarities are also seen to PG0618, PG1477, PG1451, PG0254, PG1211, PG0566, PG0605, PG0844, PG1533, PG1049, PG1497, PG1084, PG1048, PG1929, many of which are ABC transporter proteins.","Mon Apr 2 13:14:35 MDT 2001","Mon Feb 12 14:37:21 MST 2001","-53% similar to PDB:1V43 Crystal Structure of ATPase subunit of ABC Sugar Transporter (E_value = 8.5E_27);-53% similar to PDB:1VCI Crystal structure of the ATP-binding cassette of multisugar transporter from Pyrococcus horikoshii OT3 complexed with ATP (E_value = 8.5E_27);-52% similar to PDB:1B0U ATP-BINDING SUBUNIT OF THE HISTIDINE PERMEASE FROM SALMONELLA TYPHIMURIUM (E_value = 5.5E_26);-52% similar to PDB:2D62 Crystal structure of multiple sugar binding transport ATP-binding protein (E_value = 2.3E_24);-51% similar to PDB:1F3O Crystal structure of MJ0796 ATP-binding cassette (E_value = 8.7E_24);","","","Residues 27 to 214 (E-value = 5.7e-57) place PG0921 in the ABC_tran family which is described as ABC transporter (PF00005)","Wed Mar 14 15:09:16 MST 2001","34540775","","","","","","1","","","PG1034" "PG0922","1097017","1098504","1488","TTGCCAAGACAATGGAATACTGATGCTCTGTCAGCCGGGCATCTCTCGTGCTCTTCCTTCTTTCCATTCGCTCTCACGAATAAAATCATTGGCCGGATAAAAAAGAAAAACAATCGGATGAAAGGAAATAATCAGTTGTGTACACTCTTAAAGCTGTGTTTGCTCTCCATGTTAGCTTTCGGCACAGCAAAGGCACAGATACAGATAGTCGGTGCACCGAGTATGAAAGCTCTGGATGATTCACCCAATCGCTTGCAGGTTTTTATGCTGCATACACTGAATCCCGCATCTGTCATCCTGCGTTTTGCCGGAGCAGGTACAGGAAAGTTGTATCGCTATACGACCAAAGCTATCGAAGCGGAAGAAGTGACTACAGCTACATATTCGGATGGTATGTGGACACTGACCGCTCCTCAGCTCAACTGTGGTTATTTCGTGTCCGGAGATGGAAGACTGCCTCAGTACTATTGGATAAGCAACTATGCTGACTATGCCTTATTTGTTTCCGCTGTTACGGGGAAACCCTCCGAGACCTCTCCCTGTATCTCGATGGACTTAGCTGTGGATGCAGCCATCCGGCCTATTCCCTATTTTCAGCCGAATGGTATACCCCGTCGCTTGGATCGACATGTGCAAATTTCCTATCCGGATATGGAATGGGATGCCGAAGCTCGCCTGTTTCGACCTTCCACCAAGGAAGTTGAGGTTGAAGCATCGGATGACGAACGAACTCTTGTGGTGTCGGCATCGTTGGCAGATGCCGTTTACACGATCCATGGCGATCGCTTTACTAAGGAGCTATCGTTGCCTTTCACTGCCGTCGCCACGGATGAAATTCTGACACCGAAAGTAGAAGTGTATGCTTTCGTGGACAAGGTGGATGGCGGGAGCGCAATAGGAGATAATACGCCCGAAGAGGGAGATGCTTCTCTCGTGTCGGCTCCTTTTACCGTGATGCTTGCTGCATACGGCAATGAGCCTTCGGCTGCCAATTTTGTCTGGCGTATCTATCGGACGGAGGAGGGGGCTGAAAACAGTGTCCTTGTCTATAATGGAACTTCTACGGAGTTTACATTCCGCCAGGCCGGCATATATAGCATTCTGCTACAGGCAACTAACAGAACGGGGACTTGTACTGATGAGGTTTTGCTGGAAAACTATTTTAAGGTGGCAGAGTCCAGTCTGATTGTACCCAATGCTTTCAGCCCTTACGGTAGTCCTGGTGTAAACGATGTATTCCGAGTGAAGCATTCCTCTCTTGTTCATTTTGACGGGCGTATATTCGATAGCTGGGGAAAGCAGATATTTCGTTGGACCAATCCGGATGAAGGTTGGGACGGCAAGTACAGAGGCAAGATGATGCCTACGGGCGTGTACTATTATGTGATCGAGGCAGAAGGAGCGGACGGAATCAAATACAAGCGAAAAGGGGATATCAATATACTCCGACCTGCATACGAAATACCTTTGGGGGGAAACCTCCCACGA","5.80","-4.81","54912","LPRQWNTDALSAGHLSCSSFFPFALTNKIIGRIKKKNNRMKGNNQLCTLLKLCLLSMLAFGTAKAQIQIVGAPSMKALDDSPNRLQVFMLHTLNPASVILRFAGAGTGKLYRYTTKAIEAEEVTTATYSDGMWTLTAPQLNCGYFVSGDGRLPQYYWISNYADYALFVSAVTGKPSETSPCISMDLAVDAAIRPIPYFQPNGIPRRLDRHVQISYPDMEWDAEARLFRPSTKEVEVEASDDERTLVVSASLADAVYTIHGDRFTKELSLPFTAVATDEILTPKVEVYAFVDKVDGGSAIGDNTPEEGDASLVSAPFTVMLAAYGNEPSAANFVWRIYRTEEGAENSVLVYNGTSTEFTFRQAGIYSILLQATNRTGTCTDEVLLENYFKVAESSLIVPNAFSPYGSPGVNDVFRVKHSSLVHFDGRIFDSWGKQIFRWTNPDEGWDGKYRGKMMPTGVYYYVIEAEGADGIKYKRKGDINILRPAYEIPLGGNLPR","1097017 1098504","TIGR ID: PG1035","conserved hypothetical protein","Outer membrane, Cytoplasm","This sequence corresponds to gi:34397090 in Genbank.Its nearest neighbor in the NR database is gi:48853791 from Cytophaga hutchinsonii.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Mar 4 14:14:20 2005","Fri Mar 4 14:14:20 2005","Wed Jan 31 17:05:59 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Apr 5 19:15:05 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Apr 5 19:15:05 MDT 2001","34540776","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Fri Mar 4 14:14:20 2005","","1","","","PG1035" "PG0923","1098578","1101478","2901","ATGCACGATACAGTTATAAACGTAAAAGACAAGATAGCTCGACACGATGCTGTCGAAGTCTATGGAGCACGGGTGCACAATCTGAAGAATATCGATGTGTGCATTCCGCGTCATAGCCTTACAGTCATCACTGGAATGAGTGGTAGCGGAAAGTCGTCATTGGCTTTCGATACCCTTTTTGCCGAAGGACAGCGACGGTACATAGAAACTTTTTCGGCTTATGCGCGGAATTTCCTCGGTGGTGGTATGGAGCGCCCCGACGTGGACGAGATAAAAGGGCTGAGTCCGGTCATTTCCATAGAACAGAAGACGACCAATCGGAATCCGAGATCGACTGTCGGTACCGTTACAGAGGTGTACGACTTCTTTCGTTTGCTCTATGCTCGTGTTGCTGAGGCTTATTCTTATGCCGGAGGAAAGAAGATGGTGAAATACACCGAGGAGCAAATCTTCCACCTCATTTTGGAAAAGTATGATGGCCGTAAGATAGCTTTGTTAGCCCCGGTGGTTCGCTCGCGTAAGGGGCATTATAAGGAGCTATTCGAAAGGCTTCGTAAGAAAGGCTATCTGCACGTACGCGTGGATGGTGAGATTCGCGAGATTTTGCATGGGATGAAGCTTGATCGCTATAAAATGCATGACGTCGAAGTGCAGATCGACAAGCTGTGCGTAGCATCGAATCAAAGCAAACGTATAGCGGAGAGCTTGGCACTGGCTATGCGTGAAGGCGAAGGGCTTGTGATGGTGTTGGATTCGGAAAAAAACGAAGTGGGACATTTTAGTCGGATGATGATGTGTCCTGATACGGGAATTTCGTATAGCGATCCGGCTCCGCACAATTTCAGTTTCAATTCCCCTCATGGCTATTGTCCGCGCTGTAAGGGCTTGGGCGAAGTGAATCTGCCGGATATGGACAAGATCATTCCATCTCGTGAGAAGAGTATATACGAAGGTGGCATTGAGCCATTGGGCAAATACAAAAACAATCTTTTCTTTTGGCAAATAGAGGCATTGTGCGAGAAGTACGATGTGACGATCAAAACGCCTTTGCGCGATTTGCCGGAAGAGTTGATCGAGGATATCCTATATGGTACAGACGAACTACTGACCATAAACAACAAAGCTTTGGGGCAGTCGAGGTATGCTCTCAGCTTCGATGGCGTGGCTAAGTATATATTGATGCAGGCAGAAGAATCGGATGCTTCGGCTACTGCGCAGAAATGGGCAGATCAGTTTCTCAAGACTACAACTTGCCCCGACTGTGCCGGCAAGCGTCTGAACAAAGAAGCTCTGTCCTATCGTTTGGCCGGCAAGGACATTGCAGAAGTGAATGCAATGGACATCAAGACTCTTATTGAATGGGTAGATTCTCTGGATGAACATCTGTTGGATACGCAACGGGCTATTTCTATAGAAATACTGAAAGAGATACGGACACGCTTGGGGTTTCTTAAAGATGTGGGGTTGGAGTACTTGACGATGAACCGAGCTGCAGCATCCTTATCCGGAGGAGAAAGCCAGCGTATTCGTTTGGCTACGCAGATCGGGAGCAAACTGGTTGAGGTCTTGTACATATTGGATGAACCGAGTATCGGTCTTCACCAAAGGGACAATCTTCGGTTGATTCATTCGCTTCAGGATTTGCGTGATATAGGCAATACAGTGGTAGTGGTGGAGCATGATCAGGATATGATGCTGCACGCCGACTATGTAATAGACTTAGGACCACGAGCCGGCAGACATGGTGGTGAAGTGGTGTTTGCAGGTAGTCCGGAAGAGATGGTGCAGGCTAATACCCTGACTGCCGATTATATAAGTGGACGAAAGCGTATAGAAAAGTCGATCGGCAGGAGAGATGGTAGTGGGAAAACGATAAAATTATTTGGAGCCAAAGGCAATAACCTGCAGAATATAGACGTTATCTTTCCGCTGGGGGTATTTATATGTGTTACCGGGGTCTCCGGTAGTGGGAAAAGTACATTGATCAATAAGACTCTATTCCCTGCTATCAGCCAAAAGCTGTACCGCTCTTTGCAGGATCCGATGCCCTACGACCGCATAGAGGGGTTAAAGCATATAGATAAGATAATAGCCGTAGACCAAAGTCCTATCGGGCGGACGCTTAGAAGCAATGCAGCCACATATACGGGATTGTTTACCGATATTCGCGCTCTTTTTGTCGGTCTGCCCGAGAGTAAAGCTCGTGGATATAAGCCGGGGCGTTTTTCTTTCAACGTCAAAGGCGGACGCTGTGAGGTTTGTAAGGGTAATGGCTACAAGACGATCGAAATGAATTTTTTGCCCGATGTATTTGCTCCGTGTGAGGGATGCCGGGGAAAGCGATACAACAGGGAGACACTCGAAGTCCGTTACAAAGGAAAATCCATTGCGGATGTTTTGGATATGACTATCAATAAGGCTGTCGAATTTTTCGAACATGCACCTCATATTTTATCCAAGCTTTCCGTTTTACAGGAGGTCGGTTTGGGCTATATCAAACTGGGACAACCATCCTCGACTTTGTCGGGAGGAGAGTGTCAACGTGTTAAATTAGCCACCGAGCTGAGTAAACGTGACACGGGAAATACACTCTATGTATTAGATGAACCGACTACGGGCTTACATTTCGAAGATGTACGCGTTTTGTTGGGGATCCTTAATCGACTGATAGAGAGAGGGAATACGGTAATAGTGATCGAACATAATTTGGATGTGATCCGCTGTGCGGATTATTTGATTGATATAGGACCGGAGGGAGGAGCAGGTGGCGGACAGTTGCTTTACCAAGGGAAAATGGAGGATATAATAGAATGCAAGAATAGTTATACAGCTCAATTTGTGAAAGCCGAACTCGAAAAAGGCCGGATTGATACTGTACACATGAATTCTGCAGACAATATA","7.30","3.13","108037","MHDTVINVKDKIARHDAVEVYGARVHNLKNIDVCIPRHSLTVITGMSGSGKSSLAFDTLFAEGQRRYIETFSAYARNFLGGGMERPDVDEIKGLSPVISIEQKTTNRNPRSTVGTVTEVYDFFRLLYARVAEAYSYAGGKKMVKYTEEQIFHLILEKYDGRKIALLAPVVRSRKGHYKELFERLRKKGYLHVRVDGEIREILHGMKLDRYKMHDVEVQIDKLCVASNQSKRIAESLALAMREGEGLVMVLDSEKNEVGHFSRMMMCPDTGISYSDPAPHNFSFNSPHGYCPRCKGLGEVNLPDMDKIIPSREKSIYEGGIEPLGKYKNNLFFWQIEALCEKYDVTIKTPLRDLPEELIEDILYGTDELLTINNKALGQSRYALSFDGVAKYILMQAEESDASATAQKWADQFLKTTTCPDCAGKRLNKEALSYRLAGKDIAEVNAMDIKTLIEWVDSLDEHLLDTQRAISIEILKEIRTRLGFLKDVGLEYLTMNRAAASLSGGESQRIRLATQIGSKLVEVLYILDEPSIGLHQRDNLRLIHSLQDLRDIGNTVVVVEHDQDMMLHADYVIDLGPRAGRHGGEVVFAGSPEEMVQANTLTADYISGRKRIEKSIGRRDGSGKTIKLFGAKGNNLQNIDVIFPLGVFICVTGVSGSGKSTLINKTLFPAISQKLYRSLQDPMPYDRIEGLKHIDKIIAVDQSPIGRTLRSNAATYTGLFTDIRALFVGLPESKARGYKPGRFSFNVKGGRCEVCKGNGYKTIEMNFLPDVFAPCEGCRGKRYNRETLEVRYKGKSIADVLDMTINKAVEFFEHAPHILSKLSVLQEVGLGYIKLGQPSSTLSGGECQRVKLATELSKRDTGNTLYVLDEPTTGLHFEDVRVLLGILNRLIERGNTVIVIEHNLDVIRCADYLIDIGPEGGAGGGQLLYQGKMEDIIECKNSYTAQFVKAELEKGRIDTVHMNSADNI","1098578 1101478","For other excinuclease ABC subunits see PG1934 (A), PG0346 (B) and PG1740 (C).TIGR ID: PG1036","excinuclease ABC subunit A","Cytoplasm","Numerous significant hits to excinuclease ABC subunit A protein in gapped BLAST; e.g. residues 16-955 are 51% similar to gb|AAC67271.1| excinuclease ABC subunit A of Bacillus subtilis, residues 16-955 are 51% similar to excinuclease ABC (subunit A) of Bacillus halodurans, residues 16-947 are 49% similar to pir||A70619 excinuclease ABC chain A of Mycobacterium tuberculosis H37RV, residues 15-953 are 48% similar to sp|Q50968|UVRA_NEIGO excinuclease subunit A of Neisseria gonorrhoeae, residues 6-956 are 46% similar to gb|AAC71645.1| excinuclease ABC subunit A (uvrA) of Mycoplasma genitalium. This sequence is similar to BT0578. ","
InterPro
IPR003439
Domain
ABC transporter related
PF00005\"[645-919]TABC_tran
PS00211\"[501-515]T\"[841-855]TABC_TRANSPORTER_1
PS50893\"[616-948]TABC_TRANSPORTER_2
InterPro
IPR004602
Family
Excinuclease ABC, A subunit
TIGR00630\"[17-936]Tuvra
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[483-611]T\"[834-946]TG3DSA:3.40.50.300
PTHR19222\"[821-947]TPTHR19222
SSF52540\"[18-583]T\"[622-934]TSSF52540


","BeTs to 13 clades of COG0178COG name: Excinuclease ATPase subunitFunctional Class: LThe phylogenetic pattern of COG0178 is --t--qvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","Residues 722-840 are 46% similar to a (ATP-BINDING ABC SUBUNIT A EXCINUCLEASE EXCISION NUCLEASE) protein domain (PD001646) which is seen in UVRA_THETH.Residues 278-367 are 47% similar to a (ABC SUBUNIT A EXCINUCLEASE ATP-BINDING EXCISION NUCLEASE) protein domain (PD003717) which is seen in O26543_METTH.Residues 663-719 are 61% similar to a (ATP-BINDING ABC SUBUNIT A) protein domain (PD003881) which is seen in UVRA_NEIGO.Residues 841-886 are 65% similar to a (ABC SUBUNIT A ATP-BINDING) protein domain (PD186123) which is seen in UVRA_MYCPN.Residues 139-270 are 38% similar to a (ATP-BINDING ABC SUBUNIT A) protein domain (PD003919) which is seen in UVRA_THETH.Residues 501-715 are 27% similar to a (EXCINUCLEASE ABC SUBUNIT A) protein domain (PD190842) which is seen in Q9Z985_BBBBB.Residues 841-886 are 80% similar to a (ATP-BINDING TRANSPORT PROTEIN TRANSPORTER ABC) protein domain (PD000006) which is seen in UVRA_HAEIN.Residues 548-591 are 65% similar to a (ABC SUBUNIT A ATP-BINDING EXCINUCLEASE EXCISION NUCLEASE) protein domain (PD001721) which is seen in O32498_DEIRA.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Thu Mar 28 14:29:43 2002","Thu Feb 1 14:58:09 2001","Tue Dec 2 16:53:33 2003","Tue Mar 26 15:47:33 2002","","Wed Feb 14 16:20:53 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 16-948 and 621-726 are 42% and 35% similar (respectively) to fragments (residues 13-943 and 11-123) of PG1934, a predicted excinuclease ABC subunit A. Weaker similarities are seen to PG1497, a predicted ABC transporter protein, MSD-NBD fusion protein. ","Wed Feb 14 16:20:53 MST 2001","Wed Feb 14 16:20:53 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 410 to 575 (E-value = 7.1e-07) place PG0923 in the ABC_tran family which is described as ABC transporter (PF00005)Residues 645 to 916 (E-value = 6.1e-25) place PG0923 in the ABC_tran family which is described as ABC transporter (PF00005)","Tue Dec 2 16:53:33 2003","34540777","","","","","","1","","","PG1036" "PG0924","1101507","1102883","1377","ATGAAAGAACAGAAATTGTCTAATCGGTTTTGTCCGGAAGGCATGACCGTAGAAGAGTGGCAAGTAGGATTAAGAAGAGAATTTGCTGAACAGAATCCTTTCGATGTTGAACATTTGGATGAGAATCGGATATGGGGCGATTATTTGGTCGCAAACGGCCGCAACCGATACCGAGTTGCATTCCGTGGTGTTCGGAGCGAACGGAATTATTGTTCTTGTCTCGATTTTAGAACGAATGGGCTTGGAACATGCAAGCATATCGAGGCAGTAACACTCTTTCTTCAAGATCAGGTACCCGGTTATCCTTGGGGCGAATTTGACTATACGCCTGAGTATAGCTCCATCTATGTAAGCTATAAAGGCGGACGGAGCATCAAGATGCGTGTTGGACGAGAAGAGACGGCACGCTTCGAGGCCTTGCGTGCTCGCTTTTTCGATGAATCGGGCACTTTGCCTCCTGAGAACTACAGCTTCTTACCGCAGATTTGTGATGAGGCCAAGGATATAGCTGCTTCATTCCGTTGTTATGAAGATGTATTTGATCTGACCCAGGAGCATTGTCGCAGGATGGAGTGGCAAGATTATTTACGTGAGACCAATCCTGATAAGCGTGTCGATAATGAATACACGGCCGATATGCCGGAAGAAATGCGTAGGCATGTGTACGATTTGGCATATGAAGGACATGGTGTGATGGTCGGTCTTCCTTCTGATGTAATTGTCCGCGAAGTCGTTGCTCTTGCCGATGTATATTTGCGCGATCAGCCCGGGGCTACGGGATATGTGATTATCAATGATCCCCAGCGCTTCATCCTTTGGCGCAATGCCTTTGCCAATCCTGCTCTTCGCCGCTTGCCCATTGAGGTGATGCATGCATCTGCCTTTGTCAAGAAGGTGGCTAATAATGTTCCCCCTTGTACGTTCATGTTTGTGGAGCAGGCCGCTCGTTTGAAGGAGTGGCGCGATCCCGTTTCGGTGGCTATCAAGAGGATGCAGATCGACCATCTTTATATGAATCTGGAGACCATCGAAGATCTCACCCCTGTTCAGTTCTCCTCTGTGGTACAGCATATAGATCCCTTTATCTTAGGCCCGTTCTATCGCTTTATCCGAGACTATCGTCCTATCTTCCCGCTTAGAAATGATGGCTCCAATCTGCCTGATGATGTGCGCGACTTCATGTTCTTGTACACATCCGATTCGATTAGAGAAATGAACGAAATGCTTCCTCCTATCCGTACGGCAGAAATTTTGCTGCATGGTACTGATGCGGAAGAAGAGATAGACAAACTCCTGCGTCATCTTAATCGTGTTCTCTCGAATGATACGCTGCGAGAAGTATTTCTTAAAAGAATCAGTATGATTGTCGGGGCATCG","5.20","-12.91","53661","MKEQKLSNRFCPEGMTVEEWQVGLRREFAEQNPFDVEHLDENRIWGDYLVANGRNRYRVAFRGVRSERNYCSCLDFRTNGLGTCKHIEAVTLFLQDQVPGYPWGEFDYTPEYSSIYVSYKGGRSIKMRVGREETARFEALRARFFDESGTLPPENYSFLPQICDEAKDIAASFRCYEDVFDLTQEHCRRMEWQDYLRETNPDKRVDNEYTADMPEEMRRHVYDLAYEGHGVMVGLPSDVIVREVVALADVYLRDQPGATGYVIINDPQRFILWRNAFANPALRRLPIEVMHASAFVKKVANNVPPCTFMFVEQAARLKEWRDPVSVAIKRMQIDHLYMNLETIEDLTPVQFSSVVQHIDPFILGPFYRFIRDYRPIFPLRNDGSNLPDDVRDFMFLYTSDSIREMNEMLPPIRTAEILLHGTDAEEEIDKLLRHLNRVLSNDTLREVFLKRISMIVGAS","1101507 1102883","TIGR ID: PG1037","conserved hypothetical protein","Cytoplasm","This sequence corresponds to gi:34397092 in Genbank.Its nearest neighbor in the NR database is gi:32473602 from Rhodopirellula baltica SH 1.","
InterPro
IPR007527
Domain
Zinc finger, SWIM-type
PF04434\"[57-95]TSWIM
PS50966\"[57-95]TZF_SWIM


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Mar 4 14:16:52 2005","Fri Mar 4 14:16:52 2005","Thu Feb 1 15:07:14 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Mar 4 14:16:52 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540778","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Fri Mar 4 14:17:45 2005","","1","","","PG1037" "PG0925","1102886","1105180","2295","ATGTCCGAAGATTATCTCTCATCATTGAACGACAGCCAAAAGGCTGCCGTTCTTTATAATGACGGGCCTGCCTTGGTGATAGCCGGGGCAGGCTCCGGCAAAACACGGGTACTCGTTTATAAATTGCTGCACCTGATTCACTCCGGCTACGATCCCGCAAGGCTGATGGCACTGACCTTTACGAACAAGGCTGCCAAAGAGATGAAAGAACGTGTGGCAAGCGAGATCGGACCTGCTGCTTACAGGATACAGATGGGTACATTCCATTCCGTTTTCTCTCGTATACTTAGAGAGAATGCGACACACCTCGGATATACTCGCGACTTCAGCATATACGATACGAACGATACCAAGAGCTTGCTGCGTCATGTGATGAAGCGCATGAATATCGATGATAAGGTATATCGCCTCAACGCTGTACAACATCGTATATCGATGGCTAAGAATCAGCTGATCTCTCCCGAATCGTATGCTGCCAATAAGGATCTCTCCCGATATGATATAGACTGTCGAATGCCTCGGATGGCAGAGATTTATTCTCTCTATACCATTCTGTGCAAGCAGAATAATGCCATGGATTTCGATGATCTGCTTTTCAAAATCAATGTCCTTTTTCGTGATTTTCCGGATGTCTTGCAGACCTACCGTGACCGCATCGATTATTTATTGATCGACGAATATCAGGATACCAACTTTGCACAGTATTTGATTGCCAGGCAGTTGATGGGGGAGAAAGGCAAGGTATTCGTCGTGGGGGATGATGCTCAGAGTATATACAGTTTCCGTGGAGCCAAAGTGGAAAACATTCTGGGCTTTTCAAAGTCGTTCCCCGGGAGCAAACTTTTCAAACTTGAGGAGAACTATCGGAGTACACAGAGCATCGTCAATGCTGCCAATAGCTTGATTGCTCACAATGAGGGGCGAATCCCCAAGCAAGTTTTTTCGAACAAACAAGTAGGTGAGCGTATTCGCCTGACGGGTTGTCTGTCGGGGTATTTGGAGGCTTATACGGTAGCGGATTCGATCGTCGAGCGACGCATGCAAGAGCATTGTCCTTATTCCGATTTCGCCATTCTGTACCGCACTAATGCGCAGAGCCGAGTTTTCGAGGAAGCACTTCGCAAACACAATATCCCTTTTCGTATATACGGTGGGCTTTCGTTCTATTCGCGAAAAGAGATCAAGGACGTCCTGGCCTATTTTCGTCTAATCGTAAATCCCAATGATGACGAAGCACTCAGGCGTGTAATCAATTATCCCAAGCGAGGAATAGGAGATACCACTCTGTCTCGTCTTAACGAGATAGCCACGGCTTCTTCTCGTTCGTTGTGGGACGTACTGTCCGAATCGCAGAAGGGTCTTCCCGATCTTAGTGCTACAGCCCGACGCCGTCTTGGTGAGTTCGTTTCCCTCATCCGTGAACTTCAGGAGTCCGAATACGAATCTTTGTACGAACAAGCAGCCGATGTGGTCAAACGGAGCGGGATCTCGGCCGAAATTTTTTCTGACAAAAGTATCGAGGGAATAAGTCGGCAGGAAAACCTCAAAGAATTGCTCAACGGCATTGAGGAATACGGCACTTCTTACGCCGAAGAAAGGGGAGAGAAACCCTCCTTGGGAACGTTCCTAAACGAGGTTGTACTCCTGACGGACCAAGATACCGAGGGAGTGGTCGGAGATTATGTCACCCTGATGACGGTACATGCTGCAAAGGGACTTGAGTTCAAGCATATTTTTATCGTTGGTATGGAAGAAAATCTTTTCCCTTCGATGATGAATGCTACCGAACAGGGTCTTGAGGAAGAGCGTCGTCTCTTCTATGTGGCTATCACTCGTGCCAAAGAATCCTGTCATATCAGTTTTGCTGCGGAACGCTCCCGAAACGGACGAACAGAGCGTTCGCGTCCGAGCCGCTTCTTACAAGAACTTGATGATGCATACGTTGAGCGACGTGTGCCACAAGAAATGTTAGGAGGGCACAGCCAAGGTGACGAACTTCCCATCCATTTTTCTCGGAGCGATGCTTTCGAAAGATTGCCTCAGCCGGAGCCGATTCGCAGACGGCTGGTACGCGTCGGCTCCTCTCCTGTTCATGAGGAGCGAATGGTTCATCAGCAGATAGGAGATTTGTGCGTGGGCGACACGGTGGCACATGCGCGCTTCGGAATAGGAATCATCGAATCCCTCGAAGGAGAAGGCGATAATGCCAAGGCTGAGGTTTCGTTTCAGCAGGTAGGACGCAAACGTCTGTTACTTCGGTTTGCCAAGCTATCCAAAGTGGAAAAAGATTCGATC","7.00","0.00","87097","MSEDYLSSLNDSQKAAVLYNDGPALVIAGAGSGKTRVLVYKLLHLIHSGYDPARLMALTFTNKAAKEMKERVASEIGPAAYRIQMGTFHSVFSRILRENATHLGYTRDFSIYDTNDTKSLLRHVMKRMNIDDKVYRLNAVQHRISMAKNQLISPESYAANKDLSRYDIDCRMPRMAEIYSLYTILCKQNNAMDFDDLLFKINVLFRDFPDVLQTYRDRIDYLLIDEYQDTNFAQYLIARQLMGEKGKVFVVGDDAQSIYSFRGAKVENILGFSKSFPGSKLFKLEENYRSTQSIVNAANSLIAHNEGRIPKQVFSNKQVGERIRLTGCLSGYLEAYTVADSIVERRMQEHCPYSDFAILYRTNAQSRVFEEALRKHNIPFRIYGGLSFYSRKEIKDVLAYFRLIVNPNDDEALRRVINYPKRGIGDTTLSRLNEIATASSRSLWDVLSESQKGLPDLSATARRRLGEFVSLIRELQESEYESLYEQAADVVKRSGISAEIFSDKSIEGISRQENLKELLNGIEEYGTSYAEERGEKPSLGTFLNEVVLLTDQDTEGVVGDYVTLMTVHAAKGLEFKHIFIVGMEENLFPSMMNATEQGLEEERRLFYVAITRAKESCHISFAAERSRNGRTERSRPSRFLQELDDAYVERRVPQEMLGGHSQGDELPIHFSRSDAFERLPQPEPIRRRLVRVGSSPVHEERMVHQQIGDLCVGDTVAHARFGIGIIESLEGEGDNAKAEVSFQQVGRKRLLLRFAKLSKVEKDSI","ATP-dependent DNA helicase","In E.Coli this helicase is also involved inpostincision events of nucleotide excision repairand methyl directed mismatch repair.TIGR ID: PG1038","ATP-dependent DNA helicase (DNA helicase II)","Cytoplasm","Numerous significant hits to ATP-dependent DNA helicase protein in gapped BLAST; e.g. residues 3-759 are 38% similar to dbj|BAB04367.1| ATP-dependent DNA helicase of Bacillus halodurans, residues 1-760 are 37% similar to sp|P56255|PCRA_BACST ATP-dependent DNA helicase pcrA, residues 6-760 are 37% similar to emb|CAB92660.1| putative ATP-dependent DNA helicase II of Streptomyces coelicolor A3(2).This sequence is similar to CT608 and to BT0657.","
InterPro
IPR000212
Family
UvrD/REP helicase
PTHR11070\"[20-477]T\"[494-760]TUvrD_helicase
PF00580\"[9-496]TUvrD-helicase
InterPro
IPR014016
Domain
Helicase superfamily 1, UvrD-related
PS51198\"[7-291]TUVRD_HELICASE_ATP_BIND
InterPro
IPR014017
Domain
UvrD-like DNA helicase, C terminal
PS51217\"[292-572]TUVRD_HELICASE_CTER
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[5-284]T\"[285-652]TG3DSA:3.40.50.300
SSF52540\"[3-653]TSSF52540


","BeTs to 14 clades of COG0210COG name: Superfamily I DNA and RNA helicasesFunctional Class: LThe phylogenetic pattern of COG0210 is --T-YqvCEBRHUJgPOLinxNumber of proteins in this genome belonging to this COG is 1","***** PF00580 (UvrD/REP helicase) with a combined E-value of 4.2e-67. PF00580A 25-45 PF00580B 55-72 PF00580C 221-235 PF00580D 251-264 PF00580E 562-583 PF00580F 601-613***** BP00627 (HELICASE PROTEIN DNA ATP-BINDIN) with a combined E-value of 3.5e-11. BP00627A 16-35 BP00627B 284-296","Residues 511-645 are 46% similar to a (HELICASE DNA ATP-BINDING DNA-BINDING II ATP-DEPENDENT) protein domain (PD002094) which is seen in O24736_THETH.Residues 10-122 are 48% similar to a (HELICASE PROTEIN ATP-BINDING DNA) protein domain (PD000627) which is seen in PCRA_STAAU.Residues 353-432 are 67% similar to a (HELICASE DNA ATP-BINDING DNA-BINDING II ATP-DEPENDENT) protein domain (PD003735) which is seen in PCRA_BACST.Residues 104-323 are 40% similar to a (HELICASE DNA ATP-BINDING DNA-BINDING ATP-DEPENDENT) protein domain (PD001658) which is seen in P71561_MYCTU.Residues 353-528 are 35% similar to a (PROTEIN ORF PUTATIVE KINASE) protein domain (PD000146) which is seen in REP_BUCAP.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","Wed Mar 22 16:58:21 MST 2000","Tue Dec 2 17:37:00 2003","Wed Apr 18 12:52:24 MDT 2001","Tue Dec 2 17:37:00 2003","Thu Feb 8 09:13:43 MST 2001","Thu Feb 22 08:47:00 MST 2001","Thu Feb 22 08:47:00 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 218-587 are 23% similar to PG1811, a possible DNA-dependent helicase.","Fri Mar 23 13:35:18 MST 2001","Thu Feb 22 08:47:00 MST 2001","-55% similar to PDB:1PJR STRUCTURE OF DNA HELICASE (E_value = 3.0E_131);-55% similar to PDB:1QHG STRUCTURE OF DNA HELICASE MUTANT WITH ADPNP (E_value = 3.0E_131);-55% similar to PDB:3PJR HELICASE SUBSTRATE COMPLEX (E_value = 3.0E_131);-58% similar to PDB:2IS1 Crystal structure of UvrD-DNA-SO4 complex (E_value = 4.9E_121);-58% similar to PDB:2IS2 Crystal structure of UvrD-DNA binary complex (E_value = 4.9E_121);","","","Residues 9 to 496 (E-value = 1.6e-176) place PG0925 in the UvrD-helicase family which is described as UvrD/REP helicase (PF00580)","Fri Mar 9 16:32:18 MST 2001","34540779","","","","","","1","","","PG1038" "PG0925.1","1105475","1105188","288","ATGATGAACATCGCCCTCGTGTTATATACTCGGATGATTCATCTTTGGTTATTGACTGATTCGATATCGGTTATCGATCTTTGTACACAGAACTACCCTCAAGGGCGTTCGACACTTAGCTTTGAACTTAGAGCACCTCATGGATGGCTGAGTCAGTCTCATGGTTTTGAACAGATAAGAAGAAAGGATTGCTTTTGGGAAATATACCCCCACGAAGCAATAATACCTCAAAGAGCAAACCGGTGTACACCCAATAGTGTCCTAAACGTTTTTGAGTACAGAACACTG","","","11336","MMNIALVLYTRMIHLWLLTDSISVIDLCTQNYPQGRSTLSFELRAPHGWLSQSHGFEQIRRKDCFWEIYPHEAIIPQRANRCTPNSVLNVFEYRTL","","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No hits found in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-21]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Thu Feb 1 15:12:25 2001","Thu Feb 1 15:12:25 2001","Thu Feb 1 15:12:25 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG0926","1107144","1105420","1725","ATGATCGACCTTTTTTCAAAATTACGCAACTCGGATTGCAGTCTTCGGCAGAATGCCTCTAACACCTATGTCCACCGCCTGCTGAGCCGCAGCTATCTGCTGTTTTTCCTGGCCTTTTTACAGCTTATTGTCAATGAATCCTATCGCCGAGTATTGGTCTCTTGGAATATGGAGGTTCGATTTGCGGATATTCTGATTGCCCCGATTGTTTGGAGCTTGGTCGTTTATTTATTACTTGCAGCCATCCCGAGCCGTCGGTTATATCGAGGCATTATGTGGCCCGTGATCCTGATCGCAACGCTTATGTACGTAGTCGAGATGTACCTGCTCAGGTGCTACGGGACTGTTTTTATCCCCTATATAGCTACTGCATTTCTTGCTACTACATCAGCCGAGGCCAGTGCATTCTGGCGAGAGGCTTTCTCTTGGAGCGATATTGGTCATGTCGCAGGTTGGTATGCGATCGTTTGGCTTGTGAGTCTAACCCTCGGTCGGCTACTACATCTACTCCCAAGCAGACCTAAATTTCTCTTTCCTCTACTGCTTCTGTTTCTTAGCCCAATACTCTATGCAGCAGTTTGGCACTATCCCAAAGCTCTTGATCAGCTCTCCGAAGATAGAGGCTATGCTTTCTCCTATCCGACAGCTGCACCTTGTGAGAGGTTGGTATGGAGCATCTCGCAAAGCTTGATGGAAGGCAAAGAGATCAATGCCCTTTTCGATCGCATTAACTCCAGTACAAAGAGAGATATGGTTACCAAAGTCTCCCCTAAAGCGCCACACACGGTAGTGCTCGTTCTGGGTGAGTCAGCCCGACCTGATTATATGCATAGCTATGGTTATCCTCTGGAGAATACCCCCCGATTGGATAGTCTGCTTGCATCCGGTGCTGCTGTACAATTCGACGATGTGGTCAGTGCCAAGCCTAATACTCAAGGTTCGATTGCAGCGATGATGTCTATTGGAGAAAGCCGTGCAGGAGGAAAATGGTATGACGATCCTATGCTGATACCGCTACTCCGCTCCGCCGGTTACTATACCTTCTGGCTGAGTGCTCAGGAAAAACTGGGCTTTGCAGTGCAAAATGTCACAGCCATCGCCAAACTTTCGGACAGTACCCTTTTCGTCTTCAGAGGGATGGATGATGTGGTATTACCCAATCTCATGCAACGAGCCGAGTATCAAAATCTATTTGAGGTGGTACATCTGAGTGGCTCACATGTATCCTATCAGGATCGTTACCCCTCTGAATTCGGCAAATTCACCTCGGAAAACCTTCCCTCTCATCATGACGAATCAAAGGATGCAGTCGTGGCGCACTATGTCAATAGTCTGTACTACACGGATTATATTCTCGGCGAGATTGAGCGAAAATACGCAAATGAAGATGCGATCATCATCTACCTTTCGGATCACGGACAGGTACTCTATGATGCACCCAACAACCCCAATTTGGTCGGCCATTCATTTAGCCAACAAGGTGTGTCTATCCCTCTGTTTATCTATCTCAGTCCATCTATGAGAACCAAATACCCGGAGCTTATCCCTCGATTGCAATCCATTAGGAGCCGACGCATCATGACCGATGTCCTGCCCTATGCTATTATGGGACTCTTAGGAATAGAATCTCCACTCTACAATCCGGAGCTGGACTTTTGGGGCACCGGTTATGATGAACATCGCCCTCGTGTTATATACTCGGATGATTCATCTTTGGTTATTGAC","6.50","-3.74","65333","MIDLFSKLRNSDCSLRQNASNTYVHRLLSRSYLLFFLAFLQLIVNESYRRVLVSWNMEVRFADILIAPIVWSLVVYLLLAAIPSRRLYRGIMWPVILIATLMYVVEMYLLRCYGTVFIPYIATAFLATTSAEASAFWREAFSWSDIGHVAGWYAIVWLVSLTLGRLLHLLPSRPKFLFPLLLLFLSPILYAAVWHYPKALDQLSEDRGYAFSYPTAAPCERLVWSISQSLMEGKEINALFDRINSSTKRDMVTKVSPKAPHTVVLVLGESARPDYMHSYGYPLENTPRLDSLLASGAAVQFDDVVSAKPNTQGSIAAMMSIGESRAGGKWYDDPMLIPLLRSAGYYTFWLSAQEKLGFAVQNVTAIAKLSDSTLFVFRGMDDVVLPNLMQRAEYQNLFEVVHLSGSHVSYQDRYPSEFGKFTSENLPSHHDESKDAVVAHYVNSLYYTDYILGEIERKYANEDAIIIYLSDHGQVLYDAPNNPNLVGHSFSQQGVSIPLFIYLSPSMRTKYPELIPRLQSIRSRRIMTDVLPYAIMGLLGIESPLYNPELDFWGTGYDEHRPRVIYSDDSSLVID","1107144 1105420","TIGR ID: PG1039","conserved hypothetical protein","Inner membrane, Outer membrane, Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 61-565 are 25% similar to gb|AAD06885.1| putative protein of Helicobacter pylori, residues 260-548 are 28% similar to gb|AAG07905.1|AE004865_6 conserved hypothetical protein of Pseudomonas aeruginosa, residues 63-512 are 23% similar to gb|AAC76937.1| hypothetical protein of Escherichia coli K12.","
InterPro
IPR000917
Domain
Sulfatase
PF00884\"[259-561]TSulfatase
InterPro
IPR001952
Family
Alkaline phosphatase
G3DSA:3.40.720.10\"[259-545]TAlk_phosphtse
noIPR
unintegrated
unintegrated
SSF53649\"[259-502]TSSF53649


","BeTs to 3 clades of COG2194COG name: Predicted membrane-associated, metal-dependent hydrolaseFunctional Class: RThe phylogenetic pattern of COG2194 is --------E--HuJ------xNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 272-413 are 34% similar to a (PROTEIN INTERGENIC REGION TRANSMEMBRANE) protein domain (PD005703) which is seen in YA64_HAEIN.Residues 61-407 are 22% similar to a (PUTATIVE) protein domain (PD216123) which is seen in Q9ZJJ5_BBBBB.Residues 410-543 are 36% similar to a (PROTEIN MEMBRANE INTERGENIC REGION) protein domain (PD009517) which is seen in Q9ZJJ5_BBBBB.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Feb 1 15:25:10 2001","Thu Feb 1 15:25:10 2001","Thu Feb 1 15:25:10 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","Residues 259 to 563 (E-value = 7.3e-32) place PG0926 in the Sulfatase family which is described as Sulfatase (PF00884)","","34540780","","","","","","1","","","PG1039" "PG0927","1108041","1107580","462","ATGCGCAAGAAAAGGCTCGACGCCATTCGCCGGCATATTCTGCGGAGCGAAATCTCCACCCAAGAGGAACTGCAAACAGCCTTGCTGTCCGAAGACATTCCCGTATCGCAGGCCACACTTTCACGCGATCTGGAAATCCTCGGCATAGAAAAATCGGCCTCGCCTTCAGGGAAAAAAGTGTACATCCTGCCTCGAGACAATCGTCCACCCTCCTCTCGCGGTGAACTTCGTATCGGACGCACCGAAGGGTTTATCGGACCGGTCGATACAGGAGAGATGCTTCTGCTCAATACGGCTGAGGGCCATGCAGCCCGTATCGCATCGGAAATAGAGGAGCTGTCTGCGCCCGAAGTGGCGGACGTATTCTTCGGCCCGACGCACATCGTTGTCATCGGGCAGAAAGGAACCACACGTCAGGCTTTACTCTGCGCCATTGCTCCGGCCATTCCCGAAGTCCTCCGC","6.80","-0.32","16798","MRKKRLDAIRRHILRSEISTQEELQTALLSEDIPVSQATLSRDLEILGIEKSASPSGKKVYILPRDNRPPSSRGELRIGRTEGFIGPVDTGEMLLLNTAEGHAARIASEIEELSAPEVADVFFGPTHIVVIGQKGTTRQALLCAIAPAIPEVLR","1108095 1107580","TIGR ID: PG1040","conserved hypothetical protein","Cytoplasm","Several significant and numerous weak hits in gapped BLAST; e.g. residues 2-137 are 34% similar to sp|P94992|ARGR_MYCTU arginine repressor of Mycobacterium tuberculosis, residues 2-142 are 30% similar to gb|AAF10320.1|AE001930_1 arginine repressor/activator of Deinococcus radiodurans, residues 9-131 are 30% similar to dbj|BAB06496.1 transcriptional regulator of arginine metabolism expression of Bacillus halodurans.","
InterPro
IPR001669
Family
Arginine repressor
PR01467\"[20-33]T\"[36-51]T\"[88-101]TARGREPRESSOR
PF01316\"[1-69]TArg_repressor
SSF55252\"[79-149]TArg_repress
InterPro
IPR011991
Domain
Winged helix repressor DNA-binding
G3DSA:1.10.10.10\"[1-66]TWing_hlx_DNA_bd
noIPR
unintegrated
unintegrated
SSF46785\"[2-77]TSSF46785


","BeTs to 5 clades of COG1438COG name: Arginine repressorFunctional Class: EThe phylogenetic pattern of COG1438 is ------v-ebrh-------n-Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 2-137 are 34% similar to a (ARGININE REPRESSOR TRANSCRIPTION) protein domain (PD007402) which is seen in ARGR_MYCTU.","","Wed Jun 13 16:09:53 MDT 2001","","Wed Jun 13 16:09:53 MDT 2001","Wed Jun 13 16:09:53 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Jun 13 16:09:53 MDT 2001","Wed Jun 13 16:09:53 MDT 2001","","","Mon Feb 5 08:29:15 2001","Mon Jun 18 14:42:46 MDT 2001","Thu Feb 1 15:38:15 2001","","Mon Jun 18 14:38:37 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis. ","Thu Feb 1 15:38:15 2001","Wed Jun 13 16:09:53 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 1 to 69 (E-value = 2.3e-12) place PG0927 in the Arg_repressor family which is described as Arginine repressor, DNA binding domain (PF01316)","Mon Jun 18 14:38:37 MDT 2001","34540781","","","","","","1","","","PG1040" "PG0928","1109015","1108065","951","ATGATATTGAACATACTGCTTCTAATTATCGGATTGGCTTTAGTCGTTGGCGGAGCCAATTTTCTCACCGATGGCGCAGCCTCCATAGCCAAGCGATTTCGACTATCGGATTTGGTCATCGGCCTTACCGTACTGGCCTTCGGCACATCGGCTCCCGAACTCACCGTCAGTCTGATGGCAGCCCTGAAAGGAAGTGCCGATATAGCTATCGGCAACGTCATCGGGAGCAATATCTTTAACATTCTGGCCATCGTTGGCATTACGGCTCTGATCATGCCGCTGACCATGTCGAACAGTACGATTCGTATCGAAATCCCTCTAACCATTCTCTCCTCCGCGGTCTTGTTTTTCATGGCCAACGACCGCCTCTTCGACATGGCCGGAGAGAATGTGATCACCCGTACCGAAGGTTTCGTATTACTGGCTTTCTTCCTGATATTTCTATTCTACACTTTCAATATGTCCAAAGGGGAAGAATCCCCCGGGCAAGTGAGGCAGTTTGCCCTACCCCTATCCATAATAATGGTAATAGGCGGTCTGGTAGCTCTCGTCTTCGGGGGCGATCTGTTCGTGGACAATGCAGCTATGCTTGCCGGACGCATGGGAGTAAGCGAATCGGTTGTCGCCATCACCATCGTAGCAGGAGGAACTTCCTTGCCCGAATTGGTCACCACCTTAGTGGCTGCCATCAAGAAGCGTCCGGGCATGGCCATCGGCAATATCGTAGGTAGCAACCTCTTCAACATCCTGCTCATCCTCGGAGTCAGTTCGTCCATCAGCCCCATACGGATCCAAGGCATTACGGTCGTGGACTATGGGATTTTCATTCTATCGGCAATCCTGCTCTACGTTTTCGGCCTTTTCTTCGGAGACAAAACGATCAAACGCTTCGAAGGCAGCATCCTCTTATCGCTCTTCATATGCTATACGGTCTATTTGGTCATGACCGCC","5.30","-1.05","33533","MILNILLLIIGLALVVGGANFLTDGAASIAKRFRLSDLVIGLTVLAFGTSAPELTVSLMAALKGSADIAIGNVIGSNIFNILAIVGITALIMPLTMSNSTIRIEIPLTILSSAVLFFMANDRLFDMAGENVITRTEGFVLLAFFLIFLFYTFNMSKGEESPGQVRQFALPLSIIMVIGGLVALVFGGDLFVDNAAMLAGRMGVSESVVAITIVAGGTSLPELVTTLVAAIKKRPGMAIGNIVGSNLFNILLILGVSSSISPIRIQGITVVDYGIFILSAILLYVFGLFFGDKTIKRFEGSILLSLFICYTVYLVMTA","1109015 1108065","TIGR ID: PG1041","conserved hypothetical protein","Inner membrane, Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 20-314 are 40% similar to fragment (residues 18-315) of dbj|BAB04184.1| unknown conserved protein of Bacillus halodurans, residues 22-317 are 36% similar to fragment (residues 89-390) of pir||S74922 hypothetical protein slr0681 of Synechocystis sp. strain PCC 6803, residues 20-311 are 36% similar to fragment (residues 20-314) of gb|AAC06453.1| hypothetical protein of Aquifex aeolicus.","
InterPro
IPR004481
Family
K+-dependent Na+/Ca+ exchanger related-protein
PTHR10846\"[33-165]TK_NaCaexchng
TIGR00367\"[1-309]TK_NaCaexchng
InterPro
IPR004837
Domain
Sodium/calcium exchanger membrane region
PF01699\"[13-151]T\"[181-313]TNa_Ca_ex


","BeTs to 10 clades of COG0530COG name: Ca2+/Na+ antiporterFunctional Class: PThe phylogenetic pattern of COG0530 is amTkYqvce-------ol---Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 201-317 are 36% similar to a (PROTEIN EXCHANGER TRANSMEMBRANE SODIUM/CALCIUM PRECURSOR) protein domain (PD001002) which is seen in P72945_SYNY3.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Mon Feb 5 14:51:08 MST 2001","Mon Feb 5 14:51:08 MST 2001","Mon Feb 5 14:51:08 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","Residues 13 to 151 (E-value = 3.6e-39) place PG0928 in the Na_Ca_ex family which is described as Sodium/calcium exchanger protein (PF01699)Residues 181 to 313 (E-value = 4.2e-38) place PG0928 in the Na_Ca_ex family which is described as Sodium/calcium exchanger protein (PF01699)","","34540782","","","","","","1","","","PG1041" "PG0929","1110730","1109087","1644","ATGAATGATTTTCGCCCCAACCCTTCCCTCTTGCTGGAGACGAGCTGGGAGGTTTGCAATAAGCAGGGTGGTATATACACTGTGCTTACATCGAGGGCACATGAGATGATGAAACGCCACGACGGACGTATCATTTTCATAGGCCCCCTGCTAACGGAGCAGGAAGACTTACCCACCGATTTTGAGAATACAGTCCCTGCCATCTTGGAGGACTGGCATCGTGATGCAGCACCCTCGCTGGACTTGCGATATGTGTGCGGCAGCTGGCGAACTCCCGGTTCTCCCCCTGTAGTACTGGTGGACTTCGAACCCCTCCATGCACAGAAAGCAACGCTCTACTATGAGATGTGGGAGCACTTCGGCATCCAAAGCGACAAGGGGTACGGCGACTATGACGAGGCCTCGCTCTTCGGCATTGCCGCAGCCCAAACGATGCATAGCCTGTGTGAATACCTCTGCCCCGAAGACCAACCGGCCATAGGTATATTCAACGAATGGATGCTCGGCATGGGACTCCTCTACAGCAAGCGGAAAACACCTCGTCTGAAAACCCTTTTCCTCACACATGCCACCACCACAGGGCGGTCTATCGCCGGCAATAACAAAGCTCTGTATGCCTACATGCCGGGCTACAACGGCGATCAAATGGCTGCCGAACTCGGTGTAGAAGCCAAACACGGGATAGAAAAAGCGGCGGCTCACCAATCGGACACCTTTGCCACGGTAAGCGAACTCACGGCCAAAGAATGCCGGCAACTGCTCGAACGCGATCCGATGGTACTGCCCAACGGATTCGAACCGAACTTCGTGCCACAAGGAGAAGAATACGAGAGGCGACGTGCAGAAGCGCGAAAGCGACTGCTCCACGTAGCGGAACATCTGACCGGCAAGCAACTGCCTGCCGATACCTTACTGATAGCCACGAGCGGACGGTACGAGTACAGGAACAAAGGTATCGACCTCTTCATCGATGCCGCTTCCGAGGCCGGACGATCGGGCAAACTCCGCACTCCGACTTTGGCTTTTATCCTCGTGCCGGCTTGGGTAGCCGGAGCGCGTGCCGATCTGCAATATCTACTGAATCATCCCGATCCGACGGAGTATAAAGAGAAACCCCTCCCCTATCCTTTCCTGACTCATTGGTTGCACGACATACAGGAACAGACTATCTCGAAACGACTCGACGAATCCGCCGGCAGTGCCGGAGAGGTGTCCTTCATCTTCGTTCCTTGTTACCTGAATCGGAAGGATGGGATCTTCGGCCTCGGCTACTACGATTTGCTCATCGGTATGGACCTGACCGTCTTTCCCTCCTACTATGAACCGTGGGGATATACACCGCTGGAAAGCATCGCTTTCGGTATTCCGACGGTGACGACCGACCTTTCGGGCTTCGGCCTTTGGGCTATGCAGGAGCGCGGTAGTCGGAACGACTTCAGTACGGGCGTAGCCGTCATCAAGCGTACCGACGACAATTATGCAGAAGCCGTACAAGCCATCGCTGACCTGCTATATCGTTGGCCGGCCGAAAGTACAGACAGAACAGCCTGCCGGCTGGCAGCCATGCAAACGGCATCCCATGCAGAGTGGCGTTTGTTTTACAACCGGTATGAAGAAGCATACTCTGAATTGCTCAGTCGAGAT","5.10","-17.66","61843","MNDFRPNPSLLLETSWEVCNKQGGIYTVLTSRAHEMMKRHDGRIIFIGPLLTEQEDLPTDFENTVPAILEDWHRDAAPSLDLRYVCGSWRTPGSPPVVLVDFEPLHAQKATLYYEMWEHFGIQSDKGYGDYDEASLFGIAAAQTMHSLCEYLCPEDQPAIGIFNEWMLGMGLLYSKRKTPRLKTLFLTHATTTGRSIAGNNKALYAYMPGYNGDQMAAELGVEAKHGIEKAAAHQSDTFATVSELTAKECRQLLERDPMVLPNGFEPNFVPQGEEYERRRAEARKRLLHVAEHLTGKQLPADTLLIATSGRYEYRNKGIDLFIDAASEAGRSGKLRTPTLAFILVPAWVAGARADLQYLLNHPDPTEYKEKPLPYPFLTHWLHDIQEQTISKRLDESAGSAGEVSFIFVPCYLNRKDGIFGLGYYDLLIGMDLTVFPSYYEPWGYTPLESIAFGIPTVTTDLSGFGLWAMQERGSRNDFSTGVAVIKRTDDNYAEAVQAIADLLYRWPAESTDRTACRLAAMQTASHAEWRLFYNRYEEAYSELLSRD","1110730 1109087","TIGR ID: PG1042","glycogen synthase","Cytoplasm","Numerous significant hits to glycogen synthase in gapped BLAST; e.g. residues 10-547 are 27% similar to gb|AAC98780.2| glycogen synthase of Neurospora crassa, residues 10-504 are 29% similar to gb|AAB67378.1| Glycogen Synthase (UDP-glucose--starch glucosyltransferase) of Saccharomyces cerevisiae, residues 10-547 are 27% similar to gb|AAB30886.1| glycogen synthase [human, liver, Peptide, 703 aa] of Homo sapiens.This sequence is similar to BT1294.","
InterPro
IPR001296
Domain
Glycosyl transferase, group 1
PF00534\"[431-465]TGlycos_transf_1
InterPro
IPR008631
Family
Glycogen synthase
PTHR10176\"[10-547]TGlycogen_synth
noIPR
unintegrated
unintegrated
SSF53756\"[23-329]T\"[424-546]TSSF53756


","BeTs to 10 clades of COG0438COG name: Glycosyltransferases IFunctional Class: MThe phylogenetic pattern of COG0438 is AMTKYQVCEBRhUj--o---XNumber of proteins in this genome belonging to this COG is 9","***** PF00534 (Glycosyl transferases group 1) with a combined E-value of 3.1e-07. PF00534B 434-469","Residues 13-347 are 31% similar to a (GLYCOGEN SYNTHASE TRANSFERASE) protein domain (PD010105) which is seen in O93869_NEUCR.Residues 426-511 are 36% similar to a (TRANSFERASE PROTEIN GLYCOSYLTRANSFERASE SYNTHASE) protein domain (PD000172) which is seen in O93869_NEUCR.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Mon Feb 5 11:22:01 2001","Thu Dec 4 13:12:51 2003","Wed Nov 7 14:49:23 2001","Tue May 22 14:58:42 MDT 2001","Tue May 22 14:58:42 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue May 22 14:58:42 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 13 to 547 (E-value = 7.2e-21) place PG0929 in the Glycogen_syn family which is described as Glycogen synthase (PF05693)","Tue May 22 14:58:42 MDT 2001","34540783","","","Farkas,I., Hardy,T.A., Goebl,M.G. and Roach,P.J. 1991. Two glycogen synthase isoforms in Saccharomyces cerevisiae arecoded by distinct genes that are differentially controlled. J. Biol. Chem. 266 (24): 15602-15607. PubMed: 1908457.","","Thu Feb 8 09:34:47 MST 2001","1","","","PG1042" "PG0930","1112944","1110770","2175","ATGATGAAAAAGAGTGCTACCACCTCTTCAGCCTGCAACGGCTGCCCCGCACACAGCGGAAATAAACTCCGGCGCATGGGCACCGATGCGGAGCGATACGACTTCACCATCGCCCTTGCCGGCAATCCCAATACAGGCAAGAGTACGGTATTCAATGCCCTGACCGGGCTCAAACAACATACGGGCAACTGGCCCGGGAAAACGGTAGAGAAAGCCGAAGGTGCATTCTCGTATGCCGGCTCTTCATACAAGATAGTGGATCTTCCGGGCACCTATTCTCTCCTTTCTACCTCCGAGGATGAGGAGATCGCTCGCGACTTCATTCTCTTCGGCAAGCCCGATGTTACCCTCATCGTGGCAGATGCTACCCGACTGGAGCGGAATATGAATCTGATCCTGCAAATCCTCGAAATAACGGATCGTGCCGTCCTATGTGCCAATCTAATGGACGAAGCCGAACGGAACGGCGTAGAGATCGACCTGAGAGGTCTCTCGCGCAGGCTGGGCATCCCTGTCGTAGGAGCCAGTGCACGTTCGGGAGAGGGCATATCCGATCTCCTGTCGGCCCTGTCCGArGTGGCCCAAGGGATATATCGCTGTACTCCGCATCGACTGACAAGTATCGGTACTGAAATAGATACGCGGATCGATTCTTTGGCCGAATCCATCCGGCTCTTTCATCCCGATACGCCCAATAGCAGATGGTTGGCCCTTCGCCTTACGGAGGGAGATCGACGGGTGGAGAATATCCTCTATGCCGATAACGAAGCTCCGGCAGAGAAGCTGAAAAAAGAGGTGGACGAGTTTCGCCGCAACTTCGGCGAAGACCTGCATGACCAGCTCTCCGAAGCACTCTATTCCGATGCCGGAAAAATATGCCAAGAGGTGATCACTCAGGCCAACAAACGCGGGAGAACTCCACTGGACATCAAGATAGATCGTATCGTTACGAGCCGGAAGTGGGGTTTTCCCATCATGTTGCTCATGTTGGCCTTGGTACTATGGATTACCATTGTAGGCTCCAACTATCCGTCCCAGTGGTTAAGCGACAGCCTTGTAGGTATTCTCCATCCTTTGCTGAAAACACGGGCTACGGGTTTCCTGCCGGATTGGTTGAGCGGATTCCTCATCGATGGCGTCTACTTGGCTACGGCTTGGGTCGTAAGCGTGATGTTGCCTCCGATGGCCATTTTCTTTCCTCTATTTACATTATTGGAAGACTTCGGTTTTCTTCCGCGAGTGGCATTCAATTTGGACGAACTTTTTCGTCGTTCGGGTGCGCACGGCAAGCAGGCTCTGACCATGACGATGGGCTTCGGCTGCAATGCGGCAGCAATCATCAATACGCGCATCATCGATAGCCAAAGGGAGAGACTGATAGCTATTCTGACCAACAACTTCTCTCTGTGTAACGGGCGTTGGCCTACACAGATACTCCTTGCCACGATCTTCCTCACACCTGCCGTACCGGCCTATTTGCGTGGCGTGATCGGCATTGGGTCAGTCGTGGCCATTGCATTGCTGGGTATCGCTTTCATGTTTTTCTTCTCTTGGGTACTCTCCCGGACGCTGCTGCGAGGTCAAGTCTCCACGTTCAATCTGGAGCTTCCACCCTACCGCCCGCCACAGTTTTGGCAGACGATCTATAAATCCATCGTAGACCGTACACTCGTCGTTTTGTGGCGTGCCGTTGTCTTTGCCGCGCCGGCCGGTGCCCTTATCTGGCTCACCTGCAACATCCAAATCGGTGGAGTCGGGATAGCCGAATATCTGATCGACCTGCTGGACGGACCCGGTTGGCTGATGGGACTCAACGGTGTCATTCTGCTGGCCTATGTATTGGCCATTCCGGCCAATGAAATAGTGATACCGACGATACTGATGCTGACTGTCCTGACTACGGGAATAGATGGAGGAACCGGTGCCGGCGTCATGTTCGAAGCCGATGGCACAGCCGAAACGGCACGACTGTTCGAAGCCGGCGGTTGGACTATGCTGACAGGTATCAATCTCATGCTGTTCTGCCTACTCCACAATCCTTGCAGCACCACCCTGTTTAACATATATAAAGAGACGGGGAGCCGGAAATGGACGCTGCTGGCAGCCTTGATTCCGCTTGCCACAGGTTTCGTTGTGACCGTAGCCGTGGCCTTTGTATGGCGGTTGGTCGGAGGA","6.90","-0.50","181321","MMKKSATTSSACNGCPAHSGNKLRRMGTDAERYDFTIALAGNPNTGKSTVFNALTGLKQHTGNWPGKTVEKAEGAFSYAGSSYKIVDLPGTYSLLSTSEDEEIARDFILFGKPDVTLIVADATRLERNMNLILQILEITDRAVLCANLMDEAERNGVEIDLRGLSRRLGIPVVGASARSGEGISDLLSALSEVAQGIYRCTPHRLTSIGTEIDTRIDSLAESIRLFHPDTPNSRWLALRLTEGDRRVENILYADNEAPAEKLKKEVDEFRRNFGEDLHDQLSEALYSDAGKICQEVITQANKRGRTPLDIKIDRIVTSRKWGFPIMLLMLALVLWITIVGSNYPSQWLSDSLVGILHPLLKTRATGFLPDWLSGFLIDGVYLATAWVVSVMLPPMAIFFPLFTLLEDFGFLPRVAFNLDELFRRSGAHGKQALTMTMGFGCNAAAIINTRIIDSQRERLIAILTNNFSLCNGRWPTQILLATIFLTPAVPAYLRGVIGIGSVVAIALLGIAFMFFFSWVLSRTLLRGQVSTFNLELPPYRPPQFWQTIYKSIVDRTLVVLWRAVVFAAPAGALIWLTCNIQIGGVGIAEYLIDLLDGPGWLMGLNGVILLAYVLAIPANEIVIPTILMLTVLTTGIDGGTGAGVMFEADGTAETARLFEAGGWTMLTGINLMLFCLLHNPCSTTLFNIYKETGSRKWTLLAALIPLATGFVVTVAVAFVWRLVGG","1112944 1110770","TIGR ID: PG1043","ferrous iron transport protein B","Inner membrane, Cytoplasm","Numerous significant hits to ferrous iron transport protein B in gapped BLAST; e.g. residues 37-706 are 30% similar to pir||G71063 probable ferrous iron transport protein B of Pyrococcus horikoshii, residues 35-701 are 31% similar to gb|AAB98557.1| ferrous iron transport protein B of Methanococcus jannaschii, residues 37-706 are 30% similar to pir||B75084 ferrous iron transport protein B homolog of Pyrococcus abyssi (strain Orsay).","
InterPro
IPR002917
Domain
GTP-binding protein, HSR1-related
PF01926\"[35-150]TMMR_HSR1
InterPro
IPR006073
Domain
GTP1/OBG
PR00326\"[37-57]T\"[85-100]TGTP1OBG
InterPro
IPR011619
Domain
Ferrous iron transport protein B, N-terminal
PF02421\"[183-383]TFeoB_N
InterPro
IPR011640
Domain
Ferrous iron transport B, C-terminal
PF07664\"[501-555]TFeoB_C
InterPro
IPR011642
Domain
Nucleoside recognition
PF07670\"[388-484]T\"[560-695]TGate
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[36-201]TG3DSA:3.40.50.300
PTHR11649\"[31-291]TPTHR11649
SSF52540\"[35-217]TSSF52540


","No hit to the COGs database.","***** IPB000765 (GTP1/OBG family) with a combined E-value of 7.1e-08. IPB000765B 29-80","Residues 503-706 are 28% similar to a (PROTEIN IRON TRANSPORT FERROUS B TRANSMEMBRANE) protein domain (PD006094) which is seen in O58977_PYRHO.Residues 372-473 are 41% similar to a (PROTEIN IRON FERROUS TRANSPORT) protein domain (PD005672) which is seen in FEOB_SYNY3.Residues 80-191 are 48% similar to a (PROTEIN IRON FERROUS TRANSPORT) protein domain (PD007095) which is seen in FEOB_METJA.Residues 37-74 are 81% similar to a (PROTEIN GTP-BINDING INTERGENIC REGION HOMOLOG ERA IRON) protein domain (PD000414) which is seen in O27414_METTH.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","Tue Feb 6 13:28:40 MST 2001","Tue Feb 6 13:28:40 MST 2001","","","Fri May 4 16:24:13 MDT 2001","Thu Feb 8 10:04:34 MST 2001","Tue Feb 6 13:28:40 MST 2001","Mon Apr 2 13:28:27 MDT 2001","Mon Feb 12 13:18:16 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 37-716 are 27% similar to PG1138, a predicted ferrous iron transport protein B. Also (in order of similarity) PG1874, a probable GTP binding protein, PG0786, a predicted thiophene and furan oxidation protein (GTPase).","Mon Apr 2 13:28:27 MDT 2001","Mon Apr 2 13:28:27 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 39 to 720 (E-value = 3.8e-104) place PG0930 in the FeoB family which is described as Ferrous iron transport protein B (PF02421)","Mon Apr 2 13:28:27 MDT 2001","34540784","","","","","","1","","","PG1043" "PG0931","1113910","1112981","930","ATGAATTTATTCTCGAATCTTCTGTTTCGCTTCGATGTACGCCGTCTGTCCGAAGATACGCTCAAAGCTATCTATTCTTTGGAAGAAGACGGTCTGCCCGTCAATGCAGACCGACTGGCAGCCCTGACCGGGCTGAAGATAAGCAACCAACAGTATATACTCGATCTGCTGCACAAACAAGGCTACTGCCTGCCTCCGGACTCGCATCTGACCGAAAGCGGACGGAAATATGCGCTCAAGGTGATTCGCCGCCACAGGCTTTTGGAAAAGTATCTGTCCGAACACTCCGGCTATGAACCCAGCGAATGGCATACACAAGCCTGCAAGGAGGAGCACTATCTGTCCGATGAAGAGCAGGAGCGGATAGCAGTCCGCCTGGGCAATCCGCTTTTCGACCCGCATGGCGATCCCATCCCGACGGAAGAGGGCGAAGTGCAATCCGTGGAAGGAGTACATGCCGACGAACTGCCGGACGACTCGTATGTGAGAGTGATCCACATCGAAGATGAGCCTGCCGACCTGTATCGGCAGATAGAAACCATCGGTTTCTTCCGCGGTGCCGTATTTCATCTTCTGCGTACCGATACGGATGGAGTGCACCTTTCTTTCGAGGGGGAGCAGTTCTTGTTACCACAGGAGGCTGCACATAATCTGACCGTAATGCCTTGTACGGACAAAGGCATGATAGATTTGGCACGGAAGACCGTCAAGCTCACTACACTTCGTCAGGGCGAAGAAGCTACGATAGCCGGCATCAGCAAGGCCTGTCGGGGGGCCAATCGTAGACGGCTATTGGACTTAGGATTTGTACGCGGTAGCCGAATCGCCATAGATCTGACCAGCCCCTTGGGCAATCCGACAGCTTATGTGGTCAGAGGAACGGCCATCGCCCTGCGACGCGATCAAGCTCGTTATATCCTTATATACAGG","6.10","-6.27","35178","MNLFSNLLFRFDVRRLSEDTLKAIYSLEEDGLPVNADRLAALTGLKISNQQYILDLLHKQGYCLPPDSHLTESGRKYALKVIRRHRLLEKYLSEHSGYEPSEWHTQACKEEHYLSDEEQERIAVRLGNPLFDPHGDPIPTEEGEVQSVEGVHADELPDDSYVRVIHIEDEPADLYRQIETIGFFRGAVFHLLRTDTDGVHLSFEGEQFLLPQEAAHNLTVMPCTDKGMIDLARKTVKLTTLRQGEEATIAGISKACRGANRRRLLDLGFVRGSRIAIDLTSPLGNPTAYVVRGTAIALRRDQARYILIYR","1113910 1112981","TIGR ID: PG1044","probable transcription repressor (iron-dependent transcription repressor)","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 18-226 are 33% similar to gb|AAG19060.1| transcription repressor of Halobacterium sp. NRC-1, residues 17-196 are 33% similar to gb|AAF12080.1|AE002083_4 putative iron dependent repressor of Deinococcus radiodurans, residues 12-182 are 34% similar to pir||C70884 probable transcription repressor of Mycobacterium tuberculosis H37RV. ","
InterPro
IPR001367
Family
Iron dependent repressor
PF02742\"[71-141]TFe_dep_repr_C
SSF47979\"[71-146]THTH_DtxR
InterPro
IPR007167
Family
FeoA
PF04023\"[236-310]TFeoA
noIPR
unintegrated
unintegrated
G3DSA:1.10.60.10\"[80-149]TG3DSA:1.10.60.10
SSF46785\"[1-63]TSSF46785


","BeTs to 7 clades of COG1321COG name: Predicted iron-dependent transcription repressorFunctional Class: RThe phylogenetic pattern of COG1321 is AmTk--v-ebR------lin-Number of proteins in this genome belonging to this COG is 1","***** PF01325 (Iron dependent repressor) with a combined E-value of 1e-12. PF01325A 18-30 PF01325B 68-89 PF01325C 95-122","Residues 70-139 are 48% similar to a (PROTEIN INTEGRAL MEMBRANE IRON-DEPENDENT REPRESSOR DESR) protein domain (PD170439) which is seen in O29994_ARCFU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri May 4 16:29:29 MDT 2001","Mon Feb 5 09:30:51 2001","Mon Feb 5 09:30:51 2001","Thu Apr 5 12:19:53 MDT 2001","Thu Apr 5 12:19:53 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Apr 5 12:19:53 MDT 2001","-45% similar to PDB:1FX7 CRYSTAL STRUCTURE OF THE IRON-DEPENDENT REGULATOR (IDER) FROM MYCOBACTERIUM TUBERCULOSIS (E_value = 3.2E_16);-45% similar to PDB:1U8R Crystal Structure of an IdeR-DNA Complex Reveals a Conformational Change in Activated IdeR for Base-specific Interactions (E_value = 3.2E_16);-52% similar to PDB:1B1B IRON DEPENDENT REGULATOR (E_value = 4.3E_13);-52% similar to PDB:2ISY Crystal structure of the nickel-activated two-domain iron-dependent regulator (IdeR) (E_value = 4.3E_13);-52% similar to PDB:2ISZ Crystal structure of a two-domain IdeR-DNA complex crystal form I (E_value = 4.3E_13);","","","Residues 71 to 141 (E-value = 6.7e-18) place PG0931 in the Fe_dep_repr_C family which is described as Iron dependent repressor, metal binding and dimerisation domain (PF02742)Residues 236 to 310 (E-value = 1.3e-10) place PG0931 in the FeoA family which is described as FeoA domain (PF04023)","Thu Apr 5 12:19:53 MDT 2001","34540785","","","","","","1","","","PG1044" "PG0932","1115298","1116485","1188","ATGTCAAGGAAAAACCATACCCACTATCTGTTGCTCTGGATGACAGCTCTCCTTCTGATCGTATGTTTGCCTCTGGAGGGCCAACGGAATCGCGCGTTTACCGTGGTTATCGATGCCGGACACGGAGGACATGATTCGGGGGCAGTCGGTAATGGTTTACGAGAGAAAGACATCAATTTGGCCGTGGCTTTGCGTGTGGGACGACTGATCAAGAGCAAGCATCCGGATGTGAAAGTGCTTTATACCCGTGAGAAGGATTTCTTCGTTACCCTGATGGGACGTGCCGAATATGCCAATAAAAACAATGCCGACCTTTTTATCAGTATTCATGTCAATTCGCAAGAGCGAGGTCATGGAGGCTATGGTACCGAGACCTATGTAATGGGACATGAACGTAACAGTAAAAATATGGCGGTAGTCCAGCGTGAGAATGCCGTCATATTGATGGAGAAAGACTATAGGACCGTTTATAAAGGGTTTGACCCCCGTTCGTCCGAGAGTTATATCATGTTCGAACTGATGCAGAATACGTATCAGGATCAGAGCATCAAACTGGCCCAACAGATCCAAAAAGGATTTGTGGCCAAGGGGCGTCATGATAGGGGGGTGAAGCTCGGCAATTTGGCTGTACTCGTGTTTTCTGCCATGCCGAGCGTTCTCGTCGAGCTGGGCTTTATAAGCAATCCGGCGGAGGCTCGTTATTTGGGGTCGGAAGCCGGGCGTGACGAATTGGCTTCGGCTATCGCCCGAGGATTTGCCCGATACAAAGAGGATTATGACAGACGTTCCGGTAAGGTGTCCGAGCCCGCACCACAAGCTACCGAGGAAGAGGATAAGGTTGAAGTCGAACCAGAAGACAATGGTATTTCTTCGGTGGCAGATATGTCTGACGGCAAGGAAAGTATAGCTCCCAAGGGGCATGCTGTAAAGCCGGATGAGGGTGCTCATTCCGCGAAGAAAACCTATAAAATACAGATCCTGTCTTCCACGACGAAGCTCAAAAATGGCGATAAGCGATTGAAAGGTTACAAGGTGGTCATTGAACAACGAGGCGGTCGATTCTTTTATCTTACAGGAGCGGTTTCCAGCGAGGATGAGGCTCGTCACCTTCGGAAAAAAGTCAGGAAAAGTTTCCCTGATGCTTATATCGTGGTTTATGAAGCGGGCAAACGTGTGAGAGAGATATAT","10.10","12.87","44325","MSRKNHTHYLLLWMTALLLIVCLPLEGQRNRAFTVVIDAGHGGHDSGAVGNGLREKDINLAVALRVGRLIKSKHPDVKVLYTREKDFFVTLMGRAEYANKNNADLFISIHVNSQERGHGGYGTETYVMGHERNSKNMAVVQRENAVILMEKDYRTVYKGFDPRSSESYIMFELMQNTYQDQSIKLAQQIQKGFVAKGRHDRGVKLGNLAVLVFSAMPSVLVELGFISNPAEARYLGSEAGRDELASAIARGFARYKEDYDRRSGKVSEPAPQATEEEDKVEVEPEDNGISSVADMSDGKESIAPKGHAVKPDEGAHSAKKTYKIQILSSTTKLKNGDKRLKGYKVVIEQRGGRFFYLTGAVSSEDEARHLRKKVRKSFPDAYIVVYEAGKRVREIY","1115298 1116485","Gapped BLAST hits tend to correspond to residues 40-250 and residues 300-380. This may be an incorrectly predicted orf.TIGR ID: PG1048","probable N-acetylmuramoyl-l-alanine amidase","Cytoplasm","This sequence is orthologous to CT268.Numerous significant hits to N-acetylmuramoyl-L-alanine amidase protein in gapped BLAST; e.g. residues 35-255 are 36% similar to emb|CAB73523.1| putative N-acetylmuramoyl-L-alanine amidase of Campylobacter jejuni, residues 10-255 are 38% similar to pir||E69961 N-acetylmuramoyl-L-alanine amidase homolog of Bacillus subtilis, residues 31-255 are 35% similar to gb|AAC07545.1| N-acetylmuramoyl-L-alanine amidase of Aquifex aeolicus. ","
InterPro
IPR002508
Family
Cell wall hydrolase/autolysin
PF01520\"[35-254]TAmidase_3
SM00646\"[95-253]TAmi_3
InterPro
IPR007730
Domain
Sporulation/cell division region, bacteria
PF05036\"[318-385]TSPOR
noIPR
unintegrated
unintegrated
G3DSA:3.40.630.40\"[32-255]TG3DSA:3.40.630.40
SSF110997\"[317-389]TSSF110997
SSF53187\"[32-255]TSSF53187


","BeTs to 9 clades of COG0860COG name: N-acetylmuramoyl-L-alanine amidaseFunctional Class: MThe phylogenetic pattern of COG0860 is -----q-CEBRhuj--olin-Number of proteins in this genome belonging to this COG is 1","***** PF01520 (N-acetylmuramoyl-L-alanine amidase) with a combined E-value of 7.7e-31. PF01520A 37-50 PF01520B 55-68 PF01520C 103-112 PF01520D 206-228","Residues 31-117 are 36% similar to a (PROTEIN N-ACETYLMURAMOYL-L-ALANINE) protein domain (PD134193) which is seen in O51610_BORBU.Residues 98-255 are 33% similar to a (AMIDASE N-ACETYLMURAMOYL-L-ALANINE) protein domain (PD002984) which is seen in O32017_BACSU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Thu Feb 8 10:28:07 MST 2001","Wed Mar 22 11:52:48 MST 2000","Thu Feb 8 10:28:07 MST 2001","Thu Feb 8 10:28:07 MST 2001","Tue May 22 15:20:21 MDT 2001","Tue May 22 15:20:21 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue May 22 15:20:21 MDT 2001","-48% similar to PDB:1JWQ Structure of the catalytic domain of CwlV, N-acetylmuramoyl-L-alanine amidase from Bacillus(Paenibacillus) polymyxa var.colistinus (E_value = 6.6E_20);-53% similar to PDB:1JEH CRYSTAL STRUCTURE OF YEAST E3, LIPOAMIDE DEHYDROGENASE (E_value = 6.6E_20);-53% similar to PDB:1V59 Crystal structure of yeast lipoamide dehydrogenase complexed with NAD+ (E_value = 6.6E_20);-46% similar to PDB:2D4Y Crystal structure of a 49K fragment of HAP1 (FlgK) (E_value = 6.6E_20);-47% similar to PDB:1X60 Solution structure of the peptidoglycan binding domain of B. subtilis cell wall lytic enzyme CwlC (E_value = 6.6E_20);","","","Residues 95 to 257 (E-value = 3.1e-35) place PG0932 in the Amidase_3 family which is described as N-acetylmuramoyl-L-alanine amidase (PF01520)","Tue May 22 15:20:21 MDT 2001","34540786","","","","","","1","","","PG1048" "PG0933","1116529","1117404","876","ATGAGAATAAGTAAGACTACAAAGATCGGAGCATTGACTCTCATTGCTCTTTTTCTGCTGTACTTCGGCCTGAACTACCTGAAAGGATTCAACGTTTTCAAACGGGCGAATGTGTATTACGCCGCTTTCCCTGAAGTGAAGAACGTCAACATTGCCAGTCCCGTATTGGTCAATGGCTATAAGGTAGGAGTGGTAAAGTCTCTTAGTTTCGACTATAAGAATGGTCGTTCTATCGTTGTGGGTATTGACCTCGAGTCCGAATATCGTATGCCCAAAGGTAGCCATTTGGCCATTCACCAGACAGCTTTGAGTGGAGCGGAGCTTCGCATCATACAAGGCGATCCTCGGGATGGATACCTGAATCCCGGGGATACCATTCGGTCTGAAACTCCCGATGATATTATGTCGGTAACTTCGAATAAGATCGTTCCTTCTGTCGTGAACATGATGCCGAAGGTGGATTCAGTCATTGTCGGCCTGGCGAATATGGTCAATAATCCCAATTTGGCCGTAATGATGGAGAATATGGCCGCAACGGCTCAGCGGCTAAATCGTTTGACTGCTTCTTTGGACAAGTCCATCGGGACGCAATTGCCTGCCGTCATGGCCAATACACGTACCATTACGGATAATGTGGCAATGCTTTCGGAAGAATTGAAACAGTTGAAACTGGAGGCTCTGATGGCCGAATTACAGGCTACATCAGAGAATCTTCGAAGCTTTTCCGATCAAATTCGCAATTCCAACGGTTCGCTCGGGATGCTCTTAAACGACAAATCGCTCTACATGCGACTGGATAGTATGGCTTCGAGTGCGGATGCACTATTGCGCGACCTCAAAGCCAATCCCAAACGCTATGTACACTTCTCCGTTTTT","10.20","6.72","32118","MRISKTTKIGALTLIALFLLYFGLNYLKGFNVFKRANVYYAAFPEVKNVNIASPVLVNGYKVGVVKSLSFDYKNGRSIVVGIDLESEYRMPKGSHLAIHQTALSGAELRIIQGDPRDGYLNPGDTIRSETPDDIMSVTSNKIVPSVVNMMPKVDSVIVGLANMVNNPNLAVMMENMAATAQRLNRLTASLDKSIGTQLPAVMANTRTITDNVAMLSEELKQLKLEALMAELQATSENLRSFSDQIRNSNGSLGMLLNDKSLYMRLDSMASSADALLRDLKANPKRYVHFSVF","1116529 1117404","TIGR ID: PG1049","conserved hypothetical protein","Periplasm, Cytoplasm","One weak hit in gapped BLAST; e.g. residues 9-287 are 22% similar to gb|AAF84110.1|AE003963_7 conserved hypothetical protein of Xylella fastidiosa.","
InterPro
IPR003399
Domain
Mammalian cell entry related
PF02470\"[35-113]TMCE


","BeTs to 3 clades of COG1463COG name: Predicted membrane proteinFunctional Class: SThe phylogenetic pattern of COG1463 is -----q-Ce-Rhuj------xNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Mon Feb 5 09:44:08 2001","Mon Feb 5 09:44:08 2001","Mon Feb 5 09:44:08 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540787","","","","","","1","","","PG1049" "PG0934","1117414","1118307","894","GTGAGAGAGATGAGTATAGCATTTAGCAGATATATTGGTATGATGAGACGAATTTTTCTCCCCTTCTTGCTTTTTCTCCTCTTATTGCACTCTATTGGCTGTAAGCAGGGTACAAAGTCGGGAGCGGGGCAGTTGCTTGCATTGATGCACGAGGCATACGAGCATGCCGATTATTCCGGAGTTCGGATTTTGGCAGACAGTCTCCATCGTCATTACTCCACCGATACAGTGGCTCGTAAGGAGGCTTTGTCTCTTAGCCGGCAGGCCGAGTACAAAGAATGCGAACGCAATCTCGCCTTCGCCGATAGTGCTTTGCTTGTTCTCTCCGATCGGATCGACAGCATGTCCCATCCTTTCAGTAAGACTTCCTCTGTGGAGGGAAGGTCTCCTGAATTCTATCTCTCGGGTTTCGGTGAGGCTTCCGGTCAGGAACATACTCGTTTGCGTTGCAGTACGGACACGCTTGGCAATCTCATTGTGCTGAGTGTTTATGCCGGAGCCGAGGCTATCAATCATACTGCTATCCGAGTGACGGATATGCAGACCAAGTCCATGCTACAGACTCGCGACATTCCCTATGATGCTGCACTTAACTATCGATTTGCCGATTTGGGGTTGCATTACGAAATAGTGACCTATCCTGTCGAAGAGACGGTAAAAATGGGTGAGCTTTTTATTCAGGCCGATTCCGAGGGACATGCTCTTCGGATAGATTTGATGGCCGGAGGCAAAGCGATGCATACATTCCAAGTATCGAAGACCGGTGTGAAATCCTTGTCTGAGACCGCTCGTCTGTCACAAATGTACAGCTATCGTACTACTCTCATGGGAGAGAGAGAAAAGGCAGAAAAGCGTATCCGTTATTTGAGCGACAAACTTGGTTTATCTTCCCGA","8.00","3.52","33432","VREMSIAFSRYIGMMRRIFLPFLLFLLLLHSIGCKQGTKSGAGQLLALMHEAYEHADYSGVRILADSLHRHYSTDTVARKEALSLSRQAEYKECERNLAFADSALLVLSDRIDSMSHPFSKTSSVEGRSPEFYLSGFGEASGQEHTRLRCSTDTLGNLIVLSVYAGAEAINHTAIRVTDMQTKSMLQTRDIPYDAALNYRFADLGLHYEIVTYPVEETVKMGELFIQADSEGHALRIDLMAGGKAMHTFQVSKTGVKSLSETARLSQMYSYRTTLMGEREKAEKRIRYLSDKLGLSSR","1117414 1118307","TIGR ID: PG1050","hypothetical protein","Cytoplasm","No significant hits in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-34]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Mon Feb 5 09:50:02 2001","Mon Feb 5 09:50:02 2001","Mon Feb 5 09:50:02 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540788","","","","","","1","","","PG1050" "PG0935","1118352","1119764","1413","ATGTCTGAAACGTTTTCGGTTCGGTTCGTCCGCTTATTGCGGCAGAATATGAACGTTGTTTTTCTCATACTCGGTATCGTAGTCTTGTCCTTATTATATCCATTGGTGAAAGACTGGCAGGTTTTCGACCCGAAAAAGGCCATGCCACCTTTCTTCGTGTGGATTTTTGTCATCGTTATGGGTGGAATGACTGTTGCTACGGGCGTCAGAACGGTCTTTCTAACAGATTCTACTATCTTCCGCAAGCTGCTGGTTATCTCGTTTGTTGTTGCTGCGGTAGGCCAACTGCTGGGCTTTGCCATCGGAGCGATATGGCTTTTCTGTGGTATTTCCTATGTGTATGCTATTGCTCAAAAGAAATTCTATCTGCCGGTAGGTATTCTTGTTCTATTGGTAGCTTACTATCTGTTTCAGATGACGGGGCTTATCGGAGCTGTAGAGACTAAAGACGCTCTGCATACACTTAAGCAGCGACTTCCCTTATTGGCTTTGCCGTTAGCTTTGTGCTGTTGGCGTCCGACAAGAACGGAATGGGGCGTATTTCTTTCTTTTTCTTTCCGCCTTGTATTGGTGTACTTATCCTGCATCATTGTTGTCTCTTTGCTTCTGAATCAGTACTATGGCCAATCCATTTTGTCTCCGTTTTCTTTTGATAAATTCTATCTGAAGACTCATATTCCGACATTGGCATCGAGTTTCTGTATGCTCCATTGGACGCATTTTGCCCATCCCACTTATATCTTCTTGGGCATATTCGCTATTTTTATGGCAGTCGCCGTACGTCAGTATTTCTATCGGGAGCAAACGGTATCTACGGTGGAAATGATCTATGGTTTGGTTGCCTTGTCATGCTTTGCTTTTATTACCCAAAGCCGCTTGGCCATGCTCTTCATTCCCCTGTCCATCATGTTCTTTTTTTTGGTGCGAGCCTTTTTCCTATCTCAGAAGAAAAAACTTTTGTTCACCTCTTTCATGCTTATCATCGTAGGCGGTTTTATCTTCAACGGCCTCTTGTCTCATCGTTTTTTTGCGGACGGAGAGCGCATGCAGATGCGTGATATAGCCATGGATGCCATCAATCGGCATCCATGGACAGGTATTCGGTTAGGCACTATGGACAATATATTGCAGGCGCAGATCGATACGGATATTTTGTTGAAGCATCCGCACAACCAGCTTCTGGCCGATGGTATGCAGCTTGGTATTCCCGGGATGGTTGTTTTGGTTGTATTCGTAGGCGGTTTGTTTTATTTTGCCTATCGCGATCGCCGATATGATTTCCTCCTTTTCCTACCTGCTATCCTCCTGACAATGGCAGTCGAATCCCCTCTGATCTTCGTTCGAGGTGCCTATTTGTTGGCATTTTGGTTCTCGGTATTTGCCGTTTCTCCGACTCGAAAGAAAGACTTTGCT","10.50","18.87","53829","MSETFSVRFVRLLRQNMNVVFLILGIVVLSLLYPLVKDWQVFDPKKAMPPFFVWIFVIVMGGMTVATGVRTVFLTDSTIFRKLLVISFVVAAVGQLLGFAIGAIWLFCGISYVYAIAQKKFYLPVGILVLLVAYYLFQMTGLIGAVETKDALHTLKQRLPLLALPLALCCWRPTRTEWGVFLSFSFRLVLVYLSCIIVVSLLLNQYYGQSILSPFSFDKFYLKTHIPTLASSFCMLHWTHFAHPTYIFLGIFAIFMAVAVRQYFYREQTVSTVEMIYGLVALSCFAFITQSRLAMLFIPLSIMFFFLVRAFFLSQKKKLLFTSFMLIIVGGFIFNGLLSHRFFADGERMQMRDIAMDAINRHPWTGIRLGTMDNILQAQIDTDILLKHPHNQLLADGMQLGIPGMVVLVVFVGGLFYFAYRDRRYDFLLFLPAILLTMAVESPLIFVRGAYLLAFWFSVFAVSPTRKKDFA","1118352 1119764","TIGR ID: PG1051","hypothetical protein","Inner membrane, Cytoplasm","This sequence corresponds to gi:34397103 in Genbank.","
InterPro
IPR007016
Family
O-antigen polymerase
PF04932\"[342-406]TWzy_C


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Mon Feb 5 09:55:57 2001","Fri Mar 4 14:20:37 2005","Mon Feb 5 09:55:57 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Mar 4 14:20:37 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540789","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Fri Mar 4 14:20:37 2005","","1","","","PG1051" "PG0936","1119832","1120185","354","ATGAAAAAGCAAAAACAGGGAAAATTATTTTATTCCATCAGCGAAGTGGCGCGGATGTTCGATCTGCCGGATTCCACTCTGCGTTTTTGGGAGAAGGAGTTTCCGGCATTAAAGCCACGTACTTCCGAAGGCGGCACACGTCGCTATACAGCCAAGGACATCGAAATGGTGCGGCTCATCCACCACCTTACCAAGGAAAAAGGACTCACACTTGCAGGCACGAAGCAAGCTCTCAAGAACGACTATGATGGTACTACGCGCAGGGAAGAAGTCATCAGTCGTCTGAAAGAAATCCGTCAGGAACTATGTGATATCCGTGATGCCATCGACCAATGGGAGCGGAAAAATATGTAC","10.30","6.43","14008","MKKQKQGKLFYSISEVARMFDLPDSTLRFWEKEFPALKPRTSEGGTRRYTAKDIEMVRLIHHLTKEKGLTLAGTKQALKNDYDGTTRREEVISRLKEIRQELCDIRDAIDQWERKNMY","1119832 1120185","TIGR ID: PG1052","conserved hypothetical protein","Cytoplasm","A few significant hits in gapped BLAST; e.g. residues 8-105 are 36% similar to gb|AAF83554.1|AE003916_8 conserved hypothetical protein of Xylella fastidiosa, residues 5-106 are 35% similar to gb|AAC06883.1| transcriptional regulator (MerR family) of Aquifex aeolicus, residues 11-106 are 33% similar to pir||B70575 probable hspR protein of Mycobacterium tuberculosis H37RV.","
InterPro
IPR000551
Domain
Bacterial regulatory protein, MerR
PF00376\"[12-49]TMerR
SM00422\"[11-81]THTH_MERR
PS50937\"[10-80]THTH_MERR_2
InterPro
IPR009061
Domain
Putative DNA binding
SSF46955\"[11-115]TPutativ_DNA_bind
noIPR
unintegrated
unintegrated
G3DSA:1.10.1660.10\"[11-102]TG3DSA:1.10.1660.10


","BeTs to 7 clades of COG0789COG name: Predicted transcriptional regulatorsFunctional Class: KThe phylogenetic pattern of COG0789 is a----q-CEBRHuj-------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Mon Feb 5 10:12:49 2001","Mon Feb 5 10:08:46 2001","Mon Feb 5 10:08:46 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540790","","","","","","1","","","PG1052" "PG0937","1120207","1120890","684","ATGGATCCCGAATTCGATCTTCTTCTGAAAGCCTGGAAAAGCAGCGGACTCTCTGTCGGTATGAAAGACGATGAGCTCTTAGCCCTGCTTGAGAGTTGTTCATACAGAGTGGAACGGCTGAAAGCCGAAGAGCTATATGCTATCGGTGGAGACAAGCTCCAAGACCTGCGAATCGTGGGTGTAGGTGAGATTCGTGCTGAGATGGTGGGGCCTTCCGGCAAGCAGATTCTGATAGATACTTTGGCGGTCGGACGCATCTTGGCTCCGGCCCTTCTTTTTGCTTCGGAGAATATTTTACCCGTTACCCTGTTTGCTAATGAGGACAGTGTTCTTTTCCGCATCGGGAAAGAAGAGTTCAAAGGGATGATGCATAAGTATCCTACTCTGATGGAGAATTTCATAGGCATGATTTCCGATATCAGTGCTTTCCTGATGAAGAAAATCCATCAGCTCAGCTTGCGAAGTTTGCAGGGCAAGATCGGAGACTACCTGTTTCAGCTTTATACGAAAGATGGCAGCAATCGGATTGTTGTCGAATCTTCATGGAAAGAACTTTCCGATCGATTTGGCGTGAACAGGCAATCACTGGCACGCAGTCTCTCTCAGCTTGAGGAAGAGGGTATCATCCGTGTGGATGGTAAAAGCATAGAAATACTCCAGCCCAACCGATTGTCGAGGCTGGAG","5.30","-3.55","25610","MDPEFDLLLKAWKSSGLSVGMKDDELLALLESCSYRVERLKAEELYAIGGDKLQDLRIVGVGEIRAEMVGPSGKQILIDTLAVGRILAPALLFASENILPVTLFANEDSVLFRIGKEEFKGMMHKYPTLMENFIGMISDISAFLMKKIHQLSLRSLQGKIGDYLFQLYTKDGSNRIVVESSWKELSDRFGVNRQSLARSLSQLEEEGIIRVDGKSIEILQPNRLSRLE","1120207 1120890","TIGR ID: PG1053","conserved hypothetical protein","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 51-220 are 28% similar to gb|AAD36246.1|AE001774_3 transcriptional regulator, crp family of Thermotoga maritima, residues 29-224 are 24% similar to emb|CAB53581.1| FNR-like protein of Lactococcus lactis, residues 28-225 are 24% similar to emb|CAB40908.1| DnrS protein of Pseudomonas stutzeri.","
InterPro
IPR000524
Domain
Bacterial regulatory protein GntR, HTH
PR00035\"[179-193]T\"[193-209]THTHGNTR
PF00392\"[183-218]TGntR
InterPro
IPR000595
Domain
Cyclic nucleotide-binding
PF00027\"[50-128]TcNMP_binding
SM00100\"[18-138]TcNMP
PS50042\"[25-123]TCNMP_BINDING_3
SSF51206\"[25-154]TcNMP_binding
InterPro
IPR001808
Domain
Bacterial regulatory protein, Crp
SM00419\"[172-220]THTH_CRP
InterPro
IPR012318
Domain
Helix-turn-helix motif, Crp-type
PS51063\"[154-222]THTH_CRP_2
InterPro
IPR014710
Domain
RmlC-like jelly roll fold
G3DSA:2.60.120.10\"[12-154]TRmlC-like_jellyroll
noIPR
unintegrated
unintegrated
SSF46785\"[155-228]TSSF46785


","BeTs to 5 clades of COG0664COG name: cAMP-binding domains - Catabolite gene activator and regulatory subunit of cAMP-dependent protein kinasesFunctional Class: TThe phylogenetic pattern of COG0664 is a---YQvCEbRH-----Lin-Number of proteins in this genome belonging to this COG is 3","***** IPB001808 (Bacterial regulatory proteins, Crp family) with a combined E-value of 3.4e-06. IPB001808A 50-101 IPB001808B 178-209","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Mon Feb 5 10:24:32 2001","Mon Feb 5 10:24:32 2001","Mon Feb 5 10:24:32 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","-55% similar to PDB:1O5L Crystal structure of Transcriptional regulator (TM1171) from Thermotoga maritima at 2.30 A resolution (E_value = 2.3E_15);","","","No significant hits to the Pfam 11.0 database","","34540791","","","","","","1","","","PG1053" "PG0938","1122739","1121297","1443","ATGGAAAAGAAATTAGTACCGCAATCCATTTCAAAAGAAAGATTGCAGAAGTTAGAAGCACAAGCAACTCTTACTCCTCAACAAGAGGAAGCGAAAGCCCGTAAAATCGAAAGAGAGAAAGCCAGACTAAAAGAACTGAACATTCCTACCGAATCTAAAGAATCCAAAGATTGCAGCCCTGCAGGGATGATCAATCCATATGCACTTACTGAAGTCATTTTAGAAAGACCATTGGATTGGAGCAACCCACGGACTACCGATATAGTAGAACGCGTGTTGGGTTCAAGCATGCAAGATCTATCCAAAGGCGACTCTGTATTAAGAGCCGGAAGAGACCAAAATGCTGAGGTCAAAATCGTGGATTCAGTTTTGACTAAGACCCAAAGAGGGCAGGACGGTCTGGAGAGAATCCTTGAATCGTTCAACGATTATGACATGCCTCCCGAAGAAAAAGAAGAAGCTGCTCCAAAGGCAAAAAAAGCAGCCCAAAAACTCGACATCGACGACCTCAGAGAGCAAGCACTGTCATCCACTACTATCACAAAGGAGATCAGCAAGATCATCCTTCCGACAAAAAATTTAAGAGATGATAATAATACAGTACATCAGTACAGAGAAGTCGGCTTCCAAAGCAATGGAGCACACAACTTGTGGGACACAGTAGTTCAAGGAATCGCTGGCGATTGTTACATGCTTGCAGCTTTGTCGGCTATAGCTTGGGTATGGCCCGCTCTATTGAATATGGATGTGGACATCATGTCTAATCAAGATGAATGGCGACTCTATCGCTACTTCATAGGGCGCTCTAAACAGACATATGCACGCCCGTCGGGATCAGGTACCTCCACCAATGAAATTCTTCAGGAAGGATATTACAAAGTTCCGATCTTTGCAAGGAGTCGCTATTGGTTCAACGGAGAATACTGGCCGGCTCTTTTCGAACAAGCATATGCCAATTGGAAATTCCCTAATGATTCCAAATACAACGCAATCCTACAGATTGGAGGTGGCTGGCCTGAGGAAGCACTTTGCGAGCTGAGTGGAGATAGCTGGTTTACCTCCTCGGGAAAACTCATGCTTTCTTCTTTCACAGATCTGTCATTGCTGAATTTTATGAAAAGCATGTGCTATAGTTGGAAGACGATAAAACCGATGGTGATTGTAACCCCATGCTGGGAGCCTCTACCTCCTATGATGCCCGGAATTGCAGCATACCATGCCTATACAGTTTTGGGATATACAGTTTCCAATGGAGCCTATTACCTGATTATCCGCAATCCATGGGGAGTGACTGAGCCAACAGGAGATGGAGTGCTAAGCAAAAGAGATTGGGTTATCCACTTCGATAATATGAAGTGGTTCAATCTATCCAAAGACGATGGCATTTTCGCACTCCGACTTGATAAAGTGAGAGAGAACTTCTGGTACATCGCATATATGTAT","5.50","-5.23","54980","MEKKLVPQSISKERLQKLEAQATLTPQQEEAKARKIEREKARLKELNIPTESKESKDCSPAGMINPYALTEVILERPLDWSNPRTTDIVERVLGSSMQDLSKGDSVLRAGRDQNAEVKIVDSVLTKTQRGQDGLERILESFNDYDMPPEEKEEAAPKAKKAAQKLDIDDLREQALSSTTITKEISKIILPTKNLRDDNNTVHQYREVGFQSNGAHNLWDTVVQGIAGDCYMLAALSAIAWVWPALLNMDVDIMSNQDEWRLYRYFIGRSKQTYARPSGSGTSTNEILQEGYYKVPIFARSRYWFNGEYWPALFEQAYANWKFPNDSKYNAILQIGGGWPEEALCELSGDSWFTSSGKLMLSSFTDLSLLNFMKSMCYSWKTIKPMVIVTPCWEPLPPMMPGIAAYHAYTVLGYTVSNGAYYLIIRNPWGVTEPTGDGVLSKRDWVIHFDNMKWFNLSKDDGIFALRLDKVRENFWYIAYMY","1122739 1121297","TIGR ID: PG1055","thiol protease","Outer membrane, Periplasm","PG0938 is essentially identical to a previously sequenced protein of P.gingivalis in Genbank AAA25652, identified as thiol protease.","
InterPro
IPR000169
Active_site
Peptidase, cysteine peptidase active site
PS00139\"[223-234]TTHIOL_PROTEASE_CYS
InterPro
IPR001300
Family
Peptidase C2, calpain
PR00704\"[223-239]T\"[297-320]TCALPAIN
PF00648\"[195-471]TPeptidase_C2
SM00230\"[154-481]TCysPc
PS50203\"[221-481]TCALPAIN_CAT
noIPR
unintegrated
unintegrated
SSF54001\"[122-479]TSSF54001


","No hit to the COGs database.","***** PR00704 (Calpain cysteine protease (C2) family signature) with a combined E-value of 4.5e-08. PR00704C 223-239 PR00704E 297-320 PR00704G 348-369","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri May 4 16:33:49 MDT 2001","Fri May 4 16:38:52 MDT 2001","Mon Feb 5 10:50:37 2001","Fri May 4 16:33:49 MDT 2001","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri May 4 16:33:49 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Fri May 4 16:33:49 MDT 2001","34540792","","Bourgeau,G., Lapointe,H., Peloquin,P. and Mayrand,D. 1992. Cloning, expression and sequencing of a protease gene (tpr) from Porphyromonas gingivalis strain W83 in Escherichia coli. Infect. Immun. 60: 3186-3192. PubMed: 1322368.","","Mon Feb 5 10:50:37 2001","","1","","","PG1055" "PG0939","1123122","1123538","417","ATGATTACAGCCGAACGTTATCACGACATTAGCATGGGACACCGCGTAGTGGGGCACGATCACAAGTGCAGACATCTGCATGGACACAACTATCGTATCCACTTTATTTGCAGTGCACCGGCTCTTGATTCGATCGGGCGTGTAGTCGATTTCGGTGTTATCAAAGAGTTGCTATGTCAGTGGCTTGAAGATCATTGGGATCACAAGATGATGCTATGGGAGCAGGATCCGTTGCTTCCTGCTTTGCGTGCGACTGTGCCGGACGATCTGGTTGCAGTACCGTTCAATCCCACCGCGGAGAATATGGCTGTTTATCTGACAGAAGTGGTAGGGCCGATGCAGTTGGCCGGCACGGGAGTAACGCTGATCGGTTGTCGGGTGGACGAGACTCGTAAGTGCTCGGCCTCCTATACATTA","6.50","-2.84","15686","MITAERYHDISMGHRVVGHDHKCRHLHGHNYRIHFICSAPALDSIGRVVDFGVIKELLCQWLEDHWDHKMMLWEQDPLLPALRATVPDDLVAVPFNPTAENMAVYLTEVVGPMQLAGTGVTLIGCRVDETRKCSASYTL","1123122 1123538","TIGR ID: PG1056","6-pyruvoyl tetrahydrobiopterin synthase","Cytoplasm","Several significant hits in gapped BLAST; e.g. residues 1-133 are 31% similar to pirF71728 hypothetical protein RP178 of Rickettsia prowazekii, residues 10-106 are 40% similar to gbAAG20940.1 Vng6306c of Halobacterium sp. NRC-1, residues 14-137 are 32% similar to gbAAF40957.1 putative 6-pyruvoyl tetrahydrobiopterin synthase of Neisseria meningitidis MC58.","
InterPro
IPR007115
Family
6-pyruvoyl tetrahydropterin synthase and hypothetical protein
PD004049\"[13-31]TPTPS_hypoth
PIRSF006113\"[1-139]TPTP_syn
PTHR12589\"[1-137]T6_PTP_synth
noIPR
unintegrated
unintegrated
G3DSA:3.30.479.10\"[8-137]TG3DSA:3.30.479.10
SSF55620\"[1-139]TSSF55620


","BeTs to 10 clades of COG0720COG name: 6-pyruvoyl-tetrahydropterin synthaseFunctional Class: HThe phylogenetic pattern of COG0720 is amtK-Qvceb-huj------xNumber of proteins in this genome belonging to this COG is 1","***** IPB001914 (6-pyruvoyl tetrahydropterin synthase) with a combined E-value of 2.8e-10. IPB001914A 9-18 IPB001914B 21-31 IPB001914D 97-111 IPB001914E 122-139","Residues 13-133 are 31% similar to a (PROTEIN SYNTHASE LYASE) protein domain (PD004049) which is seen in Q9ZDY5_RICPR.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Jul 29 15:11:37 2008","Tue Jul 29 15:11:37 2008","Mon Feb 5 11:03:35 2001","Tue Jul 29 15:11:37 2008","Tue Jul 29 15:11:37 2008","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Jul 29 15:11:37 2008","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540793","","","","","","1","","","PG1056" "PG0940","1123561","1124151","591","ATGCTCGTAAACGAAATCTTTCACAGCCTTCAGGGTGAAGGAGCCAATACCGGACGAGCTGCTGTCTTTGTCAGACTCGCAGGCTGCAATTTGGCATGTCCATATTGTGATACCGATTTTGCCCAAGGAAAAAAAATGTCATTGGAGGAGATTGCCCGCAGTATCGAACATTATCCCACACGCTTTCTCATTTGGACAGGTGGAGAACCGACTCTGCAACTTACAGAAGAAGCTACGGCTTATTTTCACAGGCTTGGTTACTTTCAAGCTATAGAGACCAACGGAACTCGCCCCGTACCCAAAGGTATAGACTATATTTCCTGTAGTCCCAAGACCGGAGCCATAGGAAAACTGAAAGAAAACTTCCCTGATGGAGTGGGGGAGTTTCGCTTCCCGTTAGGATCCGATACTCCTCTACCTCCACCGATCGATGAATTGCCCACTGCTCAGCATTATCTTGTCAGCCCCATCTTCGCGGGAGACGATGCCATGGAGCCCGATCCTTCTGCCATCACTCGCTGCGTCGAGyTCGTCAAGGCTTTTCCTGsTTGGCGTCTGAGCATACAGATGCACAAACTGATTCATATCCCA","5.60","-4.79","49735","MLVNEIFHSLQGEGANTGRAAVFVRLAGCNLACPYCDTDFAQGKKMSLEEIARSIEHYPTRFLIWTGGEPTLQLTEEATAYFHRLGYFQAIETNGTRPVPKGIDYISCSPKTGAIGKLKENFPDGVGEFRFPLGSDTPLPPPIDELPTAQHYLVSPIFAGDDAMEPDPSAITRCVEXVKAFPXWRLSIQMHKLIHIP","1123561 1124151","TIGR ID: PG1057","conserved hypothetical protein (possible radical activation enzyme)","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 5-196 are 37% similar to gb|AAC22842.1| conserved hypothetical protein of Haemophilus influenzae Rd, residues 5-192 are 39% similar to emb|CAB83993.1| hypothetical protein of Neisseria meningitidis Z2491, residues 3-129 are 38% similar to gb|AAG20939.1| Vng6305c of Halobacterium sp. NRC-1.","
InterPro
IPR007197
Domain
Radical SAM
PF04055\"[23-153]TRadical_SAM


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 5-56 are 48% similar to a (PROTEIN CONSERVED PUTATIVE COENZYME) protein domain (PD011038) which is seen in O27295_METTH.Residues 45-196 are 31% similar to a (PROTEIN CYSJ-ENO INTERGENIC REGION F223 HI1189) protein domain (PD094301) which is seen in YGCF_HAEIN.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","Tue Feb 6 13:29:45 MST 2001","Tue Feb 6 13:29:45 MST 2001","","","Thu Apr 5 12:31:05 MDT 2001","Thu Feb 8 10:41:25 MST 2001","Tue Feb 6 13:29:45 MST 2001","","Thu Apr 5 12:31:05 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Apr 5 12:31:05 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 23 to 153 (E-value = 9.7e-08) place PG0940 in the Radical_SAM family which is described as Radical SAM superfamily (PF04055)","Thu Apr 5 12:31:05 MDT 2001","34540794","","","","","","1","","","PG1057" "PG0941","1124176","1126191","2016","ATGTACAGCGGACATCATAAAATCCATTATCCTTTTCTTATCCTGTTGGTATGCCTTGCTTTTGCTGCCTGCAAGAGCGTGAAGTTGAAAGATGCGGAGAAGGCACATGATCGCCAAGAGTATACCAAGGCTGCCGATATGTACAATACATTATACAGGCGTACCCGACGAAAGCAGGTGGAGATGAAAGCTTATACGGCTTTCCGATCCGGTGAAAACTATCGTGCCGCCGGCAGACAAGCCAAAGCTTTGCGTGGCTATCTGAATGCCAGACGCTACGGGTATCCGGATTCTGTGGTACTGCTCCGTTTGGCACAGACTTATCAGCAAGGAGGTAACTATAAGGAAGCCGAGGTACTCTTCCGTGGATATCTGGAAGCTTATCCGAAAAGTTATTTTGCAGCTATCGGTTTGGAGGGGTGTCTCTTTGCCCGCCAGCAAAAGGAATATCCTACACGTTACCGGATACGGCGAGCTGCCGAGTGGAATTCGGCACGGGGCGACTTCGGCCCGGCCTATGCACCCGATGCTTCGGCTCTCTATTTCACATCGAGCAGAAGCAAAGACGACGGTTTGGATAATAGCAGCATAACGGGACTGAAACCCAACGACATTTATATCATCAAACGAGATGCACAAGGACGATGGGGACGTCCCGATAGCGTGTCCGGAGGAATCAACACTCCATGGGATGAAGGCGTGCCAACGATCACGCCCGATGGTAGTACCATATATTATACGTTGGCGCAGCAAGGAGCCGATTACGACCGTACGGTACAGATCTATTCCGCCGCTCGGAGCGGAGAAGGCGGTTGGAGCAACGGTTCGCTCGTGGACATTATGCGCGATTCGCTCCGTATGGCTGCTCATCCCTCTATGTCGGCATCCGGCGATTACCTGTATTTCGTCAGCAATATAGGCGGTAGCTATGGCGGCAAGGATATTTATCGTGTCAAGGTGTCGGATCGTTCTTATGGTTCACCGGAGAATTTGGGGCCTGATATCAATACGCCGGGGGACGAAATGTTTCCCTTCATAGATGGGGATAGTACCCTTTTCTTCGCTTCGGACGGACACGCCGGTCTGGGAGGACTGGATATTTTCAAAGCCACGCTGGACTCTACCGGCCAATGGCATGTAGTCAATATGGGACAACCGGTCAATTCCTCTGCCGATGATTTCGGCTTGGCTGTGGAGCCTAAAGGCAAAAACAAAGAAGAAGCTTTGCCGGACAACGGAGTCAAAGGTGTATTTTGTTCCAACCGAGGCGATGCACGCGGATGGCCGCACCTCTTCCATTTCGAACTGCCGGCTATCTACACCGAGATTCAAGGTTATGTGATGGACAGAGAAGAAAATCCCATAGCCGGAGCCACTGTCAGGATCGTAGGCGAACGCGGCCCCGTAGGACAGGGATTCGTGACTACTCGTGACGATGGCTCCTATAAGATGAGCGTGCAGGGCGATACTCGCTATGTAATGCTTGCCGGAGCATCGGGTTATTTGAATCAGTACGTAGAACTCAAGACCGATACCGCCAAGCAGAGTGAGACCTACTATGTGGACTTTTTCCTTGCATCGCGTGAGAAAGCCGAGGGCTTGCAAAATATTTTCTATGATTTCGATAAAGCTACTCTTCGCCCCGAAAGCATGAAGAGCTTGGACGAACTGATTCGTATCCTCACGGACAATCCGGATATTCGGATCGAATTGGGTTCGCATGCCGACAGGAAAGGCCCCGATGCTTACAACCTCGGACTATCTGACCGCAGAGCCAAATCCGTGGTGGATTACCTCACGAGTCGTGGCATAGCGGCCGACAGGCTTACGTGGAAAGGCTACGGTAAGTCTGTCCCCAAGACGGTGACAGCCAAAATTGCCGAACGGCACGATTTCCTGAAGGAAGGCGATGTGCTCACCGAGGAATTCGTAGCACCTTTGACCGAGGAGCAGCAGTCAGTCTGCGACCAACTGAACCGTCGTACCGAGTTCCGTGTGATCGAAGAAGAGTTGCGT","6.60","-2.52","75018","MYSGHHKIHYPFLILLVCLAFAACKSVKLKDAEKAHDRQEYTKAADMYNTLYRRTRRKQVEMKAYTAFRSGENYRAAGRQAKALRGYLNARRYGYPDSVVLLRLAQTYQQGGNYKEAEVLFRGYLEAYPKSYFAAIGLEGCLFARQQKEYPTRYRIRRAAEWNSARGDFGPAYAPDASALYFTSSRSKDDGLDNSSITGLKPNDIYIIKRDAQGRWGRPDSVSGGINTPWDEGVPTITPDGSTIYYTLAQQGADYDRTVQIYSAARSGEGGWSNGSLVDIMRDSLRMAAHPSMSASGDYLYFVSNIGGSYGGKDIYRVKVSDRSYGSPENLGPDINTPGDEMFPFIDGDSTLFFASDGHAGLGGLDIFKATLDSTGQWHVVNMGQPVNSSADDFGLAVEPKGKNKEEALPDNGVKGVFCSNRGDARGWPHLFHFELPAIYTEIQGYVMDREENPIAGATVRIVGERGPVGQGFVTTRDDGSYKMSVQGDTRYVMLAGASGYLNQYVELKTDTAKQSETYYVDFFLASREKAEGLQNIFYDFDKATLRPESMKSLDELIRILTDNPDIRIELGSHADRKGPDAYNLGLSDRRAKSVVDYLTSRGIAADRLTWKGYGKSVPKTVTAKIAERHDFLKEGDVLTEEFVAPLTEEQQSVCDQLNRRTEFRVIEEELR","1124176 1126191","TIGR ID: PG1058","peptidoglycan-associated lipoprotein","Outer membrane, Extracellular","This sequence is similar to CT600 of Chlamydia trachomatis.PG0941 is identical to a previously sequenced immunogenic 75 kDa protein of P. gingivalis in Genbank AAD39496.Numerous weak hits to outer membrane protein in gapped BLAST; e.g. residues 536-621 are 47% similar to pir||MMEBAD outer membrane protein A precursor of Shigella dysenteriae, residues 536-621 are 47% similar to gb|AAA24240.1| outer membrane protein II of Escherichia fergusonii, residues 536-621 are 47% similar to gb|AAG55443.1|AE005286_2 outer membrane protein 3a (II*;G;d) of Escherichia coli O157:H7.","
InterPro
IPR006664
Domain
Bacterial outer membrane protein
PR01021\"[539-561]T\"[569-584]T\"[584-600]TOMPADOMAIN
InterPro
IPR006665
Domain
OmpA/MotB
PD000930\"[536-595]TOmpA/MotB
PF00691\"[538-629]TOmpA
PS51123\"[526-670]TOMPA_2
InterPro
IPR008969
Domain
Carboxypeptidase regulatory region
SSF49464\"[442-528]TCarboxypepD_reg
InterPro
IPR011042
Domain
TolB, C-terminal
SSF50960\"[169-389]TTolB_C
InterPro
IPR011659
Repeat
WD40-like Beta Propeller
PF07676\"[157-207]T\"[223-263]T\"[278-317]T\"[332-369]T\"[395-433]TPD40
InterPro
IPR011990
Domain
Tetratricopeptide-like helical
G3DSA:1.25.40.10\"[32-146]TTPR-like_helical
InterPro
IPR013026
Domain
Tetratricopeptide region
PS50005\"[98-131]TTPR
PS50293\"[64-131]TTPR_REGION
noIPR
unintegrated
unintegrated
G3DSA:2.120.10.30\"[165-381]TG3DSA:2.120.10.30
G3DSA:3.30.1330.60\"[535-670]TG3DSA:3.30.1330.60
PS51257\"[1-24]TPROKAR_LIPOPROTEIN
SSF103088\"[524-666]TSSF103088
SSF48452\"[32-147]TSSF48452


","BeTs to 9 clades of COG1360COG name: Flagellar motor protein MotBFunctional Class: NThe phylogenetic pattern of COG1360 is -----Qv-EBrHUJ--OLinxNumber of proteins in this genome belonging to this COG is 5","***** IPB001145 (Bacterial outer membrane protein) with a combined E-value of 4.8e-25. IPB001145B 536-562 IPB001145C 569-604 IPB001145D 657-666","Residues 536-621 are 47% similar to a (PROTEIN MEMBRANE OUTER PRECURSOR) protein domain (PD000930) which is seen in OMPA_SHIDY.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Mar 22 16:26:54 MST 2000","Thu Feb 8 11:15:14 MST 2001","Thu Feb 8 10:52:30 MST 2001","Mon Apr 2 13:34:32 MDT 2001","Mon Apr 2 13:34:32 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 537-629 are 33% similar to PG1793, a predicted immunogenic 23 kDa lipoprotein PG3. Similarities are also seen to PG0626, a possible outer membrane protein.","Mon Apr 2 13:34:32 MDT 2001","Mon Apr 2 13:34:32 MDT 2001","-58% similar to PDB:1OAP MAD STRUCTURE OF THE PERIPLASMIQUE DOMAIN OF THE ESCHERICHIA COLI PAL PROTEIN (E_value = 2.1E_11);","","","Residues 538 to 629 (E-value = 9.5e-20) place PG0941 in the OmpA family which is described as OmpA family (PF00691)","Mon Apr 2 13:34:32 MDT 2001","34540795","","","","","","1","","","PG1058" "PG0941.1","1126587","1126291","297","TTGGTTTTGCGGTTTCATTCGAGCGAGTTTCTCCTAATCGGTATTGCTGGCTATTACTGTGTGCCGAAGGTAGCCGGATGGATTATTGGAGCCGGAGGTGGTATCGGCTCGTATGGACGCAATGTGAATCAGACGGTACAGCGTGGCGCACAAGGTGCATACACGGGGAGCAAGGCGATGGTTGGAGAAGCACAAGTGCTGTTGCCGGTCATGTCGTTTGGTGTCTCAAAGGGGCACTCATTAAAGAGACGTAGATTTCCACAAGTAGATTTTTCTGAAACCACTAGTAGATTTTTC","","","10670","LVLRFHSSEFLLIGIAGYYCVPKVAGWIIGAGGGIGSYGRNVNQTVQRGAQGAYTGSKAMVGEAQVLLPVMSFGVSKGHSLKRRRFPQVDFSETTSRFF","","TIGR ID: PG1059","hypothetical protein","Extracellular","No significant hits in gapped BLAST.","
InterPro
IPR012424
Family
Homologues of TraJ from Bacteroides conjugative transposon
PF07863\"[10-84]TCtnDOT_TraJ
noIPR
unintegrated
unintegrated
signalp\"[1-26]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Mon Feb 5 11:18:03 2001","Mon Feb 5 11:18:03 2001","Mon Feb 5 11:18:03 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","PG0941.1 is paralogously related to several PG proteins: in order of similarity, PG1941.1, PG0455, PG1105.2, PG1198, PG1563, PG0787.1, PG1293. ","Mon Feb 5 11:18:03 2001","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540796","","","","","","1","","","PG1059" "PG0942","1126800","1128506","1707","ATGAAAAAGACCAATCTGTTTTTATCTCTGCTGGTGATCTTTATCACCGGTAGTTTTATGACTGCCTGTGCACAGAAGTCCAAGACGAACAAACTCACCGAAGAAGATCGGAGCCGCAATGAGTATGTACAGTCGATGGATGTGCTTAGCAATATTATCGGTAACGTCAGGCTGTATTTCGTCGATACCATAAGTATCAAACATATGACTCGGCGTGGTATAGATGCGATGTTGGGCGGGCTTGACCCCTATACCGAATACATTCCTTACGAGGAAATGGATGAACTGAAATTGATGACTACGGGAGAGTATGCCGGAGTCGGAGCTATCATATCGCAGCGCCCGGATAGTGCTGTGATTATCCAGAGACCTATGGAAGGTATGCCCGCAGACGAAGCAGGATTGATAGCAGGCGACCGCATCCTGACTATCGATGGGAAAGACTTCCGCAAATCCACCACACCGAAAGTAAGCCAAGCACTGAAAGGGATAGCCGGTACTGTTGCAAAGGTGACAGTAATGCGCTATGGCGAAACCAAACCTCGTACTTTTTCCGTGAAACGTCAAAAAGTGATTATGAATTCCGTCACTTACAGCGGAATGCTCGATGGCTCGATAGGATATATCCGCTTGAACAACTTTACGGACAAAAGTGCAGAAGAGGTGCGCACGGCCTTGTTGGATCTTCGTGACAAACAAGGAGCGAAAGGTCTCATTTTGGATTTAAGAGGCAATGGTGGCGGACTGATGCAGGCTGCTATCGAGATAGTCAATCTGTTCGTCCCTAAGGGCAAAGAGGTGGTAACGACCAAAGGTCGCATTGCAGAGTCGGCGTCCGTATTTCGCACATTGACTGAACCGATCGACACGAAACTCCCGATAGTAGTCCTGATCGATGGACAATCGGCATCTTCCTCGGAGATTGTAGCCGGAGCACTGCAGGATATGGACAGGGCTGTACTGATGGGACAAAAGAGCTATGGCAAAGGGCTTGTACAAACGACTCGTCAGCTACCATACAACGGCGTGATCAAATTGACTACGGCCAAGTACTACATCCCAAGCGGACGTTGTATTCAGCGTTTGGACTACAGCCGCACCAATCGGACAGGTATGGCAACGGCCATTCCTGACAGTCTGCACAAAATCTTTTACACTGCTGCCGGAAGACGTGTAGAAGATGCAGGAGGAATCCTGCCTGACATCGAGGTCAAACAAGATACAGCTGCGACATTACTTTATTATATGGCCATCAATAATGACGTTTTCGATTTCGTCACAGGTTATGTGCTCAAGCATAAAACGATTGCCAAGCCGGAGGATTTTTCCATAACGAACGAGGACTATGCAGCTTTCTGCAAGATGATGGAAGAAAAGAAATTTGACTATGATCGCCAGAGTGGCAAGATGCTTGACAAACTGGAGGAACTGGCTAAGATAGAAGGCTACCTGCCGGAAGCCAACTCGGAGCTTAAAGCACTACGCGAAAAGCTAAAACCCAACCTGTCGCGTGATCTGCTACGATTCAAAAAGGAGATAACAAACTATCTCAACAATGAGATTGTCACTCGCTATTATTATGAGCGAGGCAGTATCCGCCAGAGTTTGCCGGAAGATAAGGTAGTCAAAGAAGCTATTAAGCTGCTGAAGGACCATCCGGAACAAATTCGACAGATCCTTGCAGCTCCGAAAGCAGAGAATAAAGGG","9.80","10.87","63526","MKKTNLFLSLLVIFITGSFMTACAQKSKTNKLTEEDRSRNEYVQSMDVLSNIIGNVRLYFVDTISIKHMTRRGIDAMLGGLDPYTEYIPYEEMDELKLMTTGEYAGVGAIISQRPDSAVIIQRPMEGMPADEAGLIAGDRILTIDGKDFRKSTTPKVSQALKGIAGTVAKVTVMRYGETKPRTFSVKRQKVIMNSVTYSGMLDGSIGYIRLNNFTDKSAEEVRTALLDLRDKQGAKGLILDLRGNGGGLMQAAIEIVNLFVPKGKEVVTTKGRIAESASVFRTLTEPIDTKLPIVVLIDGQSASSSEIVAGALQDMDRAVLMGQKSYGKGLVQTTRQLPYNGVIKLTTAKYYIPSGRCIQRLDYSRTNRTGMATAIPDSLHKIFYTAAGRRVEDAGGILPDIEVKQDTAATLLYYMAINNDVFDFVTGYVLKHKTIAKPEDFSITNEDYAAFCKMMEEKKFDYDRQSGKMLDKLEELAKIEGYLPEANSELKALREKLKPNLSRDLLRFKKEITNYLNNEIVTRYYYERGSIRQSLPEDKVVKEAIKLLKDHPEQIRQILAAPKAENKG","1126800 1128506","Gapped BLAST hits are variable in C-terminal end of orf. TIGR ID: PG1060","probable tail-specific protease","Cytoplasm, Outer membrane, Extracellular","Numerous significant hits to carboxyl-terminal proteinase in gapped BLAST; e.g. residues 1-413 are 34% similar to pirF70369 carboxyl-terminal proteinase of Aquifex aeolicus, residues 11-360 are 36% similar to gbAAB61766.1 protease of Bartonella bacilliformis, residues 6-360 are 35% similar to pirD71827 carboxyl-terminal proteinase of Helicobacter pylori (strain J99). This sequence is similar to BT2798.","
InterPro
IPR001478
Domain
PDZ/DHR/GLGF
PF00595\"[95-174]TPDZ
SM00228\"[105-177]TPDZ
PS50106\"[95-168]TPDZ
SSF50156\"[89-185]TPDZ
InterPro
IPR004447
Family
Peptidase S41A, C-terminal protease
TIGR00225\"[53-390]Tprc
InterPro
IPR005151
Domain
Peptidase S41
PF03572\"[205-366]TPeptidase_S41
SM00245\"[179-367]TTSPc
noIPR
unintegrated
unintegrated
G3DSA:2.30.42.10\"[99-178]TG3DSA:2.30.42.10
G3DSA:3.90.226.10\"[182-430]TG3DSA:3.90.226.10
PTHR19964\"[110-168]TPTHR19964
PS51257\"[1-23]TPROKAR_LIPOPROTEIN
SSF52096\"[42-413]TSSF52096


","BeTs to 10 clades of COG0793COG name: Periplasmic proteaseFunctional Class: MThe phylogenetic pattern of COG0793 is -----qvCeB-huj--olinxNumber of proteins in this genome belonging to this COG is 4","No significant hit to the Blocks database.","Residues 175-360 are 43% similar to a (PROTEASE CARBOXYL-TERMINAL PRECURSOR) protein domain (PD004132) which is seen in CTPA_BARBA.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Fri Dec 19 10:10:57 2003","Wed Mar 22 14:41:04 MST 2000","Fri Jul 25 15:14:43 2008","Thu Feb 8 11:37:11 MST 2001","","Mon Apr 2 13:39:46 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 49-551 are 30% similar to PG1617, a predicted carboxyl-terminal proteinase. Similarities are also seen to PG0214, a predicted carboxyl-terminal protease. Weaker similarities are seen to PG1417, a hypothetical protein.","Mon Apr 2 13:39:46 MDT 2001","Fri Jul 25 15:14:43 2008","-53% similar to PDB:1FC6 PHOTOSYSTEM II D1 C-TERMINAL PROCESSING PROTEASE (E_value = 7.5E_39);-53% similar to PDB:1FC7 PHOTOSYSTEM II D1 C-TERMINAL PROCESSING PROTEASE (E_value = 9.7E_39);-53% similar to PDB:1FC9 PHOTOSYSTEM II D1 C-TERMINAL PROCESSING PROTEASE (E_value = 9.7E_39);-53% similar to PDB:1FCF PHOTOSYSTEM II D1 C-TERMINAL PROCESSING PROTEASE (E_value = 9.7E_39);","","","Residues 95 to 174 (E-value = 1.1e-08) place PG0942 in the PDZ family which is described as PDZ domain (Also known as DHR or GLGF) (PF00595)Residues 204 to 368 (E-value = 8.9e-70) place PG0942 in the Peptidase_S41 family which is described as Peptidase family S41B (PF03572)","Fri Dec 19 10:10:57 2003","34540797","","","","","","1","","","PG1060" "PG0943","1129910","1128825","1086","ATGGATGTACAAGTTTATTTTTCTAAGGTAGAAGATCCACGTGTAGTGGGTCGTTGCAAGCATAAGTTAAGCGATATTCTAGTTATAGCACTGGCGAGTTATCTGTGTGGAGGCGAGGATTATGAGTCCATGCATGAACTTTGCTTAGAGCGAGGAGCATCTCTTCGCCCACCGGTTGAGTTGCCGAATGGTTGTCCGAGCGTAGACACCTTCGAAAGAGTGCTCCAACGTATTGAGCCTCAGTCTCTCTATGCTTGTCTTCAAGTTTATGGGAAAGAACTCATTAGCGACTTGGAAGGTAAACATATCGCCATTGACGGCAAACGTCTGAAAGGATCGAAGAAGAAAACCGGCAGTACACATATTCTCTCAGCTTGGGTTGATGAAGTGAGTTTAAGCCTTGCTCAAGAGACTGTTGCCGAGAAACGCAATGAGTTACAAGCCATTCCGGAAGTTTTGGATAGCCTTGATTTGTCGGGAGCAGTCATCAGCATAAATGCTATGGGGACTCAAACCAACATTGCCGAGCAGATCATCCAATCAGAAGCCGACTACATTCTAAGTCTCAAAAGCAATCAAAAACACTTGTATGAGGATGTTCAGGATTACTTCACAGGACAATACAGGTGTCATCGTTATGAAACCTTGGAGAAAGATCATGGTCGTATTGAGAAGAGGACTTATACCACATTACTAGCTTCAGAGGTCTTTGAGGAGGGGGAATATAGTCAATGGCAAGGCTTGAGAAGTTTAATTCAAGTGGAGCGTGAGATTAGTAGTTTAGAGGGAGAGACTCGCATAGATAGGCAGTATTATATCAGCAGTTTACCACCCGAGGATTGTCAGTTAATCGGACAATATATTCGAGGGCATTGGGGAATTGAGAATCGACTCCATTGGCATTTGGATGTAACCTTTAGGGAGGATACTTGTCGAGCTCGTAAGGATTATTCAGCCACCAATCTAAACACGTTGAGAAAGTTTGCTTTAGCCATTGTATCCGGGCATAAAGACAAACTATCCTTACGGAAGAGGTTGTTCAAAGCTGCTCTGAATATAGACTATCTCAAAAAGCTACTAAAGATT","6.60","-2.70","41415","MDVQVYFSKVEDPRVVGRCKHKLSDILVIALASYLCGGEDYESMHELCLERGASLRPPVELPNGCPSVDTFERVLQRIEPQSLYACLQVYGKELISDLEGKHIAIDGKRLKGSKKKTGSTHILSAWVDEVSLSLAQETVAEKRNELQAIPEVLDSLDLSGAVISINAMGTQTNIAEQIIQSEADYILSLKSNQKHLYEDVQDYFTGQYRCHRYETLEKDHGRIEKRTYTTLLASEVFEEGEYSQWQGLRSLIQVEREISSLEGETRIDRQYYISSLPPEDCQLIGQYIRGHWGIENRLHWHLDVTFREDTCRARKDYSATNLNTLRKFALAIVSGHKDKLSLRKRLFKAALNIDYLKKLLKI","1129910 1128825","Other than the weak similarity to PG1795, PG0943 is only similar to ISPg2 defined elements.Member of IS5 family of elements. PG0943 is a variant of full-length ISPg2 elements such as PG1522.TIGR ID: PG1061","ISPg2-related (PGIS2-related) transposase","Cytoplasm","PG0943 is 36% similar to a previously sequenced protein (PGIS2 transposase) of P. gingivalis in GenBank AAC45368.Numerous significant hits in gapped BLAST; e.g. residues 6-356 are 32% similar to emb|CAB82577.1| hypothetical protein of Klebsiella pneumoniae, residues 6-360 are 33% similar to gb|AAG54543.1|AE005200_5 Z0275 gene product of Escherichia coli O157:H7, residues 5-361 are 33% similar to gb|AAC82490.1| RfbQRSO22-4 of Vibrio cholerae.","
InterPro
IPR002559
Domain
Transposase, IS4-like
PF01609\"[102-332]TTransposase_11


","No hit to the COGs database.","***** PF01811 (Transposase) with a combined E-value of 2.1e-24. PF01811C 52-94 PF01811E 124-171 PF01811F 173-197 PF01811D 99-126 PF01811G 194-244","Residues 122-251 are 42% similar to a (PROTEIN TRANSPOSASE REGION PUTATIVE) protein domain (PD004339) which is seen in P95492_PORGI.Residues 248-312 are 50% similar to a (PROTEIN TRANSPOSASE PUTATIVE REGION) protein domain (PD004012) which is seen in Q44285_AERSA.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Fri Feb 16 16:03:52 MST 2001","Thu Feb 8 12:42:26 MST 2001","Thu Feb 8 12:42:26 MST 2001","Mon Feb 5 11:34:23 2001","Fri Feb 16 16:03:52 MST 2001","Fri Feb 16 16:03:52 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG0943 is a variant of full-length ISPg2 elements such as PG1522.Residues 10-340 are 36% similar to PG1522, PG0775, PG1905, PG1185, PG0249, all predicted ISPg2 elements. Fragment 279-358 is 40% similar to PG1795.","Fri Feb 16 16:03:52 MST 2001","Fri Feb 16 16:03:52 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 102 to 332 (E-value = 7.5e-14) place PG0943 in the Transposase_11 family which is described as Transposase DDE domain (PF01609)","","34540798","","Wang,C.Y., Bond,V.C. and Genco,C.A.Identification of a second endogenous Porphyromonas gingivalisinsertion element. J. Bacteriol. 179 (11), 3808-3812 (1997)","","Thu Feb 8 12:45:22 MST 2001","","1","","","PG1061" "PG0945","1131198","1131635","438","ATGATCGATGCAGATGCAATTAAGATGCGTATTCTTTCTATGATGGAGCAGCTGGGGATGACTCCTTCTGCTTTCGCTGATCGGGCCGGGATTTCTCGTTCCGCTCTGACTCACATTACCTCCGGCAGAAATAAAGTGACCTTGGATATGATCAACAAGATCATGCAGGGATTCGATGAATGGAGTGCGGAGTGGATTATCTTTGGCAAAGGGCCTCAACAATCGAATAAAACGGCATTTGAGAATGATCTTTTCTCTTATTCTTCCGTGCCGGAGCAAGAGTTGCATACAAGGACTAAAGATAATTGCGGCATACAGAGTCCATCGGGCAGATTGGAGCCGGAAATCAAGATCGTTCAAATGCCTGCGAAGCAGATCGAGAGAATTACGGTGTTCTATACGGATGGCAGCTATCAAGAGTTTCGCTCAAACAAAGAG","5.80","-1.57","16541","MIDADAIKMRILSMMEQLGMTPSAFADRAGISRSALTHITSGRNKVTLDMINKIMQGFDEWSAEWIIFGKGPQQSNKTAFENDLFSYSSVPEQELHTRTKDNCGIQSPSGRLEPEIKIVQMPAKQIERITVFYTDGSYQEFRSNKE","1131198 1131635 [Shorter 1213 417 99]","TIGR ID: PG1063","conserved hypothetical protein; possible transcriptional regulator","Cytoplasm, Periplasm","No significant hits in gapped BLAST.","
InterPro
IPR001387
Domain
Helix-turn-helix type 3
PF01381\"[11-66]THTH_3
SM00530\"[10-61]THTH_XRE
PS50943\"[11-66]THTH_CROC1
InterPro
IPR010982
Domain
Lambda repressor-like, DNA-binding
SSF47413\"[4-59]TLambda_like_DNA
noIPR
unintegrated
unintegrated
G3DSA:1.10.260.40\"[7-59]TG3DSA:1.10.260.40


","BeTs to 3 clades of COG1396COG name: Predicted transcriptional regulatorsFunctional Class: KThe phylogenetic pattern of COG1396 is --T--qV-EBR---------xNumber of proteins in this genome belonging to this COG is 5","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Sep 10 15:26:26 2004","Mon Feb 5 12:30:13 MST 2001","Mon Feb 5 12:30:13 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Sep 10 15:26:26 2004","No significant hits to the PDB database (E-value < E-10).","","","Residues 11 to 66 (E-value = 1.6e-08) place PG0945 in the HTH_3 family which is described as Helix-turn-helix (PF01381)","","34540799","","","","","","1","","","PG1063" "PG0946","1131690","1132484","795","ATGAAATACAACCATAAACTGCGTGTCGCGACCAATACGAAGCTAAACGACAGCTATTTCCTTCTTACACTTGTACCGGAGCATAATGAAGTACGATTATCTCTGCCGGAAATAAAGCCCGGACAGTTTGTTCAGGTACTGACTGATGTCCAAGGGGCTTTTTTGCGTCGGCCTATCTCTGTTTGTGATGTCGATTACGAACGGCAGGAACTATTCCTTCTGGTTCAAAAAGTAGGCAAGGGTACACGTGCTTTAGCTTCATTACAAGCATCCGATTCATTGGATCTTCTATATCCGCTTGGACAGGGGTTTACGCTTAACGATCTGCCGGATGGAGAGTATCGTCCTCTTCTCGTGGGTGGCGGTGTAGGCACTGCTCCTATGCTCTATTTGGCGCGTTGTATCAGAGAGAGGGGGATCGTGCCGGATGTTCTGCTCGGAGCGCGTTCGGCAGATCTGATCGTTATGCAGGACAGATTCTCTCGTTTTGCCAATCTGCATTGCACCACAGAGGATGGTTCGTTGGGGGTGAAGGGCTTTGTCACGAGCCACCCGACCCTTCGGGAAGGCGATTTTTCTCATATATATGTGTGTGGCCCAAAAGCAATGATGATGGCTGTAGCATCCCTGGCACGTCAACGAAATATCCCGTGTGAGGTCTCTCTGGAGAATACCATGGCTTGTGGTATCGGGGCATGTTTGTGTTGTGTGGAAAATACAAAAGAAGGCAATCTTTGCGTCTGTACGGAAGGACCGGTCTTCAATACAGATAGATTACAATGGTTCGAACAGAAG","6.60","-1.31","29289","MKYNHKLRVATNTKLNDSYFLLTLVPEHNEVRLSLPEIKPGQFVQVLTDVQGAFLRRPISVCDVDYERQELFLLVQKVGKGTRALASLQASDSLDLLYPLGQGFTLNDLPDGEYRPLLVGGGVGTAPMLYLARCIRERGIVPDVLLGARSADLIVMQDRFSRFANLHCTTEDGSLGVKGFVTSHPTLREGDFSHIYVCGPKAMMMAVASLARQRNIPCEVSLENTMACGIGACLCCVENTKEGNLCVCTEGPVFNTDRLQWFEQK","1131690 1132484","The catalytic subunit is immediately downstream at PG0947.TIGR ID: PG1064","dihydroorotate dehydrogenase electron transfer subunit","Cytoplasm, Periplasm","Numerous significant hits in gapped BLAST; e.g. residues 6-254 are 34% similar to sp|P46536|PYRK_BACCL dihydroorotate dehydrogenase electron transfer subunit of Bacillus caldolyticus, residues 1-254 are 33% similar to dbj|BAB06254.1| dihydroorotate dehydrogenase (electron transfer subunit) of Bacillus halodurans, residues 7-259 are 32% similar to emb|CAB13427.1| dihydroorotate dehydrogenase (electron transfer subunit) of Bacillus subtilis, residues 41-255 are 31% similar to pir||E71288 probable hydrogenase, gamma chain of syphilis spirochete.","
InterPro
IPR000951
Domain
Phthalate dioxygenase reductase, FPNCR module
PR00409\"[117-136]T\"[194-202]TPHDIOXRDTASE
InterPro
IPR001433
Domain
Oxidoreductase FAD/NAD(P)-binding
PF00175\"[117-209]TNAD_binding_1
InterPro
IPR008333
Domain
Oxidoreductase FAD-binding region
PF00970\"[6-106]TFAD_binding_6
InterPro
IPR012165
Family
Cytochrome-c3 hydrogenase, gamma subunit
PIRSF006816\"[3-265]TCyc3_hyd_g
noIPR
unintegrated
unintegrated
G3DSA:2.10.240.10\"[223-261]TG3DSA:2.10.240.10
G3DSA:2.40.30.10\"[5-102]TG3DSA:2.40.30.10
G3DSA:3.40.50.80\"[107-214]TG3DSA:3.40.50.80
PTHR11938\"[7-177]TPTHR11938
PTHR11938:SF7\"[7-177]TPTHR11938:SF7
SSF52343\"[106-261]TSSF52343
SSF63380\"[1-104]TSSF63380


","BeTs to 9 clades of COG0543COG name: 2-Octaprenylphenol hydroxylase and related flavodoxin oxidoreductasesFunctional Class: H,CThe phylogenetic pattern of COG0543 is amtKYQV-EbRh-----lin-Number of proteins in this genome belonging to this COG is 3","***** PR00409 (Phthalate dioxygenase reductase family signature) with a combined E-value of 2.1e-07. PR00409F 117-136 PR00409H 194-202","Residues 7-128 are 34% similar to a (DIHYDROOROTATE DEHYDROGENASE ELECTRON TRANSFER SUBUNIT) protein domain (PD155021) which is seen in PYRZ_BACSU.Residues 145-223 are 41% similar to a (PROTEIN SUBUNIT HYDROGENASE GAMMA) protein domain (PD149798) which is seen in Q58841_METJA.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Thu Mar 28 14:42:58 2002","Fri May 4 16:45:52 MDT 2001","Mon Feb 5 12:55:23 MST 2001","Thu Mar 28 14:42:58 2002","Mon Apr 2 13:44:04 MDT 2001","Mon Apr 2 13:44:04 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 9-263 are 28% similar to PG1777, a predicted hydrogenase, gamma chain.","Mon Apr 2 13:44:04 MDT 2001","Mon Apr 2 13:44:04 MDT 2001","-51% similar to PDB:1EP1 CRYSTAL STRUCTURE OF LACTOCOCCUS LACTIS DIHYDROOROTATE DEHYDROGENASE B (E_value = 2.8E_26);-51% similar to PDB:1EP2 CRYSTAL STRUCTURE OF LACTOCOCCUS LACTIS DIHYDROOROTATE DEHYDROGENASE B COMPLEXED WITH OROTATE (E_value = 2.8E_26);-51% similar to PDB:1EP3 CRYSTAL STRUCTURE OF LACTOCOCCUS LACTIS DIHYDROOROTATE DEHYDROGENASE B. DATA COLLECTED UNDER CRYOGENIC CONDITIONS. (E_value = 2.8E_26);","","","Residues 113 to 210 (E-value = 1.7e-06) place PG0946 in the NAD_binding_1 family which is described as Oxidoreductase NAD-binding domain (PF00175)","Mon Apr 2 13:44:04 MDT 2001","34540800","","","","","","1","","","PG1064" "PG0947","1132469","1133389","921","ATGGTTCGAACAGAAGTAGAAATAGGTAGGGGATTAACAATTAAAAATCCCGTAATGACTGCCAGCGGTACGTATGGCTATGGTACCGAATACAAAGATTTTATCGATATAGACCGCTTAGGTGCCATAGTTGTCAAAGGAACTACGCTTCATCATCGGGAAGGGAATGCATATCCACGCATGGCCGAAACTCCATCGGGGATGCTGAATGCCGTGGGCTTGCAAAATAAGGGTGTTCACTATTTTGTAGAGCATATATATCCGGTTATCAAGGATTATCGGACGGAGATGATAGTCAATGTAAGCGGCTCCACTTTGGACGATTACGCAGAGACCTCCCGAATAATAAATGAACTGGAGCATATCAGAGCTATAGAATTGAATATTTCTTGTCCTAATGTCAAGCAGGGAGGGATGGCTTATGGGGTTACCTGTGAGGGGGCGGCATCCGTCGTTAAAGCTGTGCGCCGAGCTTATGACAAGACATTGATCGTAAAACTTTCTCCCAACGTGACAGACATCACAGAGATAGCTCGCGCCGTAGAATCCGAAGGAGCTGATGCTATTTCAATGGTCAATACGTTTCTTGGCATGGCTATCGACGCGGAAAAACGCCGTCCCATCCTTTCGACCACTACAGGAGGCCTTTCCGGGCCATGTATCAAGCCCATTGCTCTACGTATGGTATGGCAAACCGCCAAGGTGGTACAAGTGCCTATAATCGGTATGGGGGGGATCGCATCTGCAGCTGATGCCATTGAATTCTTATTGGCCGGAGCCACGGCTGTTCAGGTGGGCTGTTACAACTTCGTAGATCCTGCTGCAGCTTCTTATATAGTCGATGGCATAGAGGATTATCTTCGAAGGCATGGAATCAGTGATGTAAAAGAGTTGATCGGCTCACTCGTAATTGAACATAAT","5.90","-4.49","33107","MVRTEVEIGRGLTIKNPVMTASGTYGYGTEYKDFIDIDRLGAIVVKGTTLHHREGNAYPRMAETPSGMLNAVGLQNKGVHYFVEHIYPVIKDYRTEMIVNVSGSTLDDYAETSRIINELEHIRAIELNISCPNVKQGGMAYGVTCEGAASVVKAVRRAYDKTLIVKLSPNVTDITEIARAVESEGADAISMVNTFLGMAIDAEKRRPILSTTTGGLSGPCIKPIALRMVWQTAKVVQVPIIGMGGIASAADAIEFLLAGATAVQVGCYNFVDPAAASYIVDGIEDYLRRHGISDVKELIGSLVIEHN","1132469 1133389","The electron transfer subunit is immediately upstream at PG0946.TIGR ID: PG1065","probable dihydroorotate dehydrogenase catalytic subunit","Cytoplasm","Numerous significant hits to dihydroorotate dehydrogenase protein in gapped BLAST; e.g. residues 11-300 are 50% similar to emb|CAB13428.1| dihydroorotate dehydrogenase of Bacillus subtilis, residues 1-300 are 48% similar to dbj|BAB06253.1| dihydroorotate dehydrogenase of Bacillus halodurans, residues 11-299 are 48% similar to gb|AAA67066.1| pyrimidine biosynthesis D of Enterococcus faecalis, residues 1-300 are 47% similar to pir||I40171 dihydroorotate oxidase of Bacillus caldolyticus.This sequence is similar to BT0892.","
InterPro
IPR001295
Domain
Dihydroorotate dehydrogenase, core
PF01180\"[3-287]TDHO_dh
PS00911\"[41-60]TDHODEHASE_1
PS00912\"[240-260]TDHODEHASE_2
InterPro
IPR005720
Domain
Dihydroorotate dehydrogenase, class 1, core
TIGR01037\"[5-302]TpyrD_sub1_fam
InterPro
IPR012135
Family
Dihydroorotate dehydrogenase, classes 1 and 2
PIRSF000164\"[10-304]TDHO_oxidase
InterPro
IPR013785
Domain
Aldolase-type TIM barrel
G3DSA:3.20.20.70\"[11-307]TAldolase_TIM
noIPR
unintegrated
unintegrated
PTHR11938\"[15-307]TPTHR11938
PTHR11938:SF5\"[15-307]TPTHR11938:SF5
SSF51395\"[11-300]TSSF51395


","BeTs to 12 clades of COG0167COG name: Dihydroorotate dehydrogenaseFunctional Class: FThe phylogenetic pattern of COG0167 is amtkyqvCEbrhuj-------Number of proteins in this genome belonging to this COG is 2","***** IPB001295 (Dihydroorotate dehydrogenase) with a combined E-value of 3.8e-51. IPB001295A 11-23 IPB001295B 40-63 IPB001295C 67-78 IPB001295D 124-136 IPB001295E 162-172 IPB001295F 185-198 IPB001295G 215-225 IPB001295H 238-268","Residues 165-300 are 52% similar to a (DEHYDROGENASE OXIDOREDUCTASE FLAVOPROTEIN) protein domain (PD001761) which is seen in PYRD_BACSU.Residues 11-79 are 59% similar to a (DIHYDROOROTATE DEHYDROGENASE) protein domain (PD005859) which is seen in PYRD_ENTFA.Residues 83-160 are 44% similar to a (DIHYDROOROTATE DEHYDROGENASE PYRIMIDINE) protein domain (PD186781) which is seen in PYRD_BACSU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Thu Mar 28 14:50:52 2002","Thu Mar 28 14:41:26 2002","Wed Dec 3 09:53:15 2003","Thu Mar 28 14:41:26 2002","Thu Feb 22 18:47:48 MST 2001","Thu Feb 22 18:47:48 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 11-302 are 22% similar to PG1794, a predicted dihydroorotate dehydrogenase.","Mon Apr 2 13:47:07 MDT 2001","Thu Feb 22 18:47:48 MST 2001","-68% similar to PDB:1EP1 CRYSTAL STRUCTURE OF LACTOCOCCUS LACTIS DIHYDROOROTATE DEHYDROGENASE B (E_value = 5.6E_77);-68% similar to PDB:1EP2 CRYSTAL STRUCTURE OF LACTOCOCCUS LACTIS DIHYDROOROTATE DEHYDROGENASE B COMPLEXED WITH OROTATE (E_value = 5.6E_77);-68% similar to PDB:1EP3 CRYSTAL STRUCTURE OF LACTOCOCCUS LACTIS DIHYDROOROTATE DEHYDROGENASE B. DATA COLLECTED UNDER CRYOGENIC CONDITIONS. (E_value = 5.6E_77);-47% similar to PDB:1DOR DIHYDROOROTATE DEHYDROGENASE A FROM LACTOCOCCUS LACTIS (E_value = 4.0E_27);-47% similar to PDB:1JQV The K213E mutant of Lactococcus lactis Dihydroorotate dehydrogenase A (E_value = 4.0E_27);","","","Residues 3 to 287 (E-value = 1.7e-87) place PG0947 in the DHO_dh family which is described as Dihydroorotate dehydrogenase (PF01180)","Mon Apr 2 13:47:07 MDT 2001","34540801","","","Quinn,C.L., Stephenson,B.T. and Switzer,R.L. 1991. Functional organization and nucleotide sequence of the Bacillus subtilis pyrimidine biosynthetic operon. J. Biol. Chem. 266 (14): 9113-9127. PubMed: 1709162","","Mon Feb 5 13:46:33 MST 2001","1","","","PG1065" "PG0948","1133663","1134304","642","ATGAATAAAGCGATTTCGGCTGAAAAGTTGTCCGCCTTGTTTAAGGACGGTATGACTATCATGGTGGGTGGCTTCTTAGCGAATGGTACCCCCGAAAGGATTATCGATGAACTAGTAAAAAGTGGTGTCAAGGATCTCACTCTTATTGCCAACGACACGTCCTATCCGGATCGTGGTTGTGGTCGGCTCATTGCAAACCATCAGGTGAAGAAGTTGATAGCTTCTCACATAGGTACGAACCCCATGACCGGTGACCAAATGAATACAGGTGAGTTGGTAATCGAGTTTAGTCCTCAGGGTACTCTTGCAGAGAGAGTACGAGCAGGAGGAGCCGGCTTGGGAGGAGTATTGACCCCTACAGGGCTTGGGACGGTAATCGAAGAAGGTAAACAGAAGATCGAGATTGATGGCGAGGTTTTTTTGCTCGAAAAACCTATCCGTGCCGACTTTGCCTTTATCAAGGGAAGTGTTGGCGATGAATTTGGGAATCTCATCTATAAAGGCACAACACAGAACTTCCAGCCCCTGATGGCAATGGCAGCAGACTGTGTAGTGGCAGAAATCGAAGAAATCCACCCCATCGGACAGATCCCCATGGAACAAATCCATACCAGCGGCATATTCGTGGACTATATCCTCCGC","4.90","-7.13","22945","MNKAISAEKLSALFKDGMTIMVGGFLANGTPERIIDELVKSGVKDLTLIANDTSYPDRGCGRLIANHQVKKLIASHIGTNPMTGDQMNTGELVIEFSPQGTLAERVRAGGAGLGGVLTPTGLGTVIEEGKQKIEIDGEVFLLEKPIRADFAFIKGSVGDEFGNLIYKGTTQNFQPLMAMAADCVVAEIEEIHPIGQIPMEQIHTSGIFVDYILR","1133663 1134304","TIGR ID: PG1066","acetoacetate:butyrate/acetate coenzyme A transferase","Cytoplasm","Numerous significant hits to acetoacetate:butyrate/acetate coenzyme A transferase protein in gapped BLAST; e.g. residues 1-214 are 50% similar to gb|AAD54947.1|AF157306_2 acetoacetate:butyrate/acetate coenzyme A transferase of Clostridium beijerinckii, residues 2-214 are 49% similar to gb|AAB53234.1| acetoacetyl-CoA:acetate/butyrate:CoA-transferase subunit of Clostridium acetobutylicum, residues 3-213 are 44% similar to gb|AAC75281.1| acetyl-CoA:acetoacetyl-CoA transferase alpha subunit of Escherichia coli K12. ","
InterPro
IPR004163
Binding_site
Coenzyme A transferase binding site
PS01273\"[16-31]TCOA_TRANSF_1
InterPro
IPR004165
Family
Coenzyme A transferase
PTHR13707\"[24-214]TCoA_trans
PF01144\"[4-214]TCoA_trans
InterPro
IPR012792
Domain
3-oxoacid CoA-transferase, subunit A
TIGR02429\"[1-214]TpcaI_scoA_fam
noIPR
unintegrated
unintegrated
G3DSA:3.40.1080.10\"[1-213]TG3DSA:3.40.1080.10
PIRSF000859\"[1-214]TCoA_trans_A
PTHR13707:SF3\"[24-214]TPTHR13707:SF3
SSF100950\"[1-212]TSSF100950


","BeTs to 5 clades of COG1788COG name: Acyl-CoA:acetate CoA transferase alpha subunitFunctional Class: IThe phylogenetic pattern of COG1788 is a-------EBRhuj-------Number of proteins in this genome belonging to this COG is 1","***** IPB001618 (Coenzyme A transferase) with a combined E-value of 6.8e-74. IPB001618A 22-63 IPB001618B 91-130 IPB001618C 139-192","Residues 2-214 are 49% similar to a (TRANSFERASE SUBUNIT COA-TRANSFERASE A) protein domain (PD003187) which is seen in CTFA_CLOAB.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed May 23 10:21:36 MDT 2001","Mon Feb 5 14:20:53 MST 2001","Mon Feb 5 14:20:53 MST 2001","Wed May 23 10:21:36 MDT 2001","Wed May 23 10:21:36 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed May 23 10:21:36 MDT 2001","-65% similar to PDB:1K6D CRYSTAL STRUCTURE OF ACETATE COA-TRANSFERASE ALPHA SUBUNIT (E_value = 1.4E_48);-52% similar to PDB:1M3E Succinyl-COA:3-ketoacid COA transferase from pig heart (selenomethionine) (E_value = 3.0E_30);-52% similar to PDB:1O9L SUCCINATE:COENZYME-A TRANSFERASE (PIG HEART) (E_value = 3.0E_30);-52% similar to PDB:1OOY SUCCINYL-COA:3-KETOACID COA TRANSFERASE FROM PIG HEART (E_value = 3.0E_30);-52% similar to PDB:1OOZ Deletion mutant of SUCCINYL-COA:3-KETOACID COA TRANSFERASE FROM PIG HEART (E_value = 3.0E_30);","","","Residues 4 to 214 (E-value = 1.2e-76) place PG0948 in the CoA_trans family which is described as Coenzyme A transferase (PF01144)","Wed May 23 10:21:36 MDT 2001","34540802","","","Petersen,D.J. and Bennett,G.N. 1993. Sequence and arrangement of genes and coding enzymes of the acetone production pathway of Clostridium butylicum ATCC 824.Gene 123: 93-97. PubMed: 8423010 Fischer,R.J., Helms,J. and Durre,P. 1993. Cloning, sequencing, and molecular analysis of the sol operon of Clostridium acetobutylicum, a chromosomal locus involved in solventogenesis. J. Bacteriol. 175 (21): 6959-6969. PubMed: 8226639 ","","Mon Feb 5 14:20:53 MST 2001","1","","","PG1066" "PG0949","1134361","1134747","387","ATGACAAAGACATCAATGATCCGTCTTCGGATGAGTGCGCATGATGCTCATTACGGAGGTAACTTAGTAGATGGGGCTCGCATGCTCCAACTCTTCGGAGACGTTGCCACAGAACTCCTTATCATGCAAGATGGTGATGAAGGCCTCTTCTGTGCTTATGACAATGTGGAATTTTTGGCTCCGGTATTTGCCGGAGATTATATAGAGGCTGTAGGCGAAATCACTCATGTGGGAAATACCAGTCGAAAGATGAAATTCGAAGCTCGTAAGGTGATTCGTCCTCGTACGGATATTTCGGAGTCGGCAGCCGATGTGCTTGACGAACCTATTGTTGTTTGCCGTGCTACCGGCACTTGTGTGGTACCGGCTAATTGCCAGCGCAACAAA","5.30","-3.48","14151","MTKTSMIRLRMSAHDAHYGGNLVDGARMLQLFGDVATELLIMQDGDEGLFCAYDNVEFLAPVFAGDYIEAVGEITHVGNTSRKMKFEARKVIRPRTDISESAADVLDEPIVVCRATGTCVVPANCQRNK","1134361 1134747","TIGR ID: PG1067","conserved hypothetical protein","Cytoplasm","This sequence corresponds to gi:34397117 in Genbank.Its nearest neighbor in the NR database is gi:19705174 from Fusobacterium nucleatum subsp. nucleatum ATCC 25586.","
InterPro
IPR006683
Domain
Thioesterase superfamily
PF03061\"[54-81]T4HBT
noIPR
unintegrated
unintegrated
SSF54637\"[3-122]TSSF54637


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Mar 4 14:24:21 2005","Fri Mar 4 14:24:21 2005","Mon Feb 5 14:24:49 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Mar 4 14:24:21 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540803","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Fri Mar 4 14:24:21 2005","","1","","","PG1067" "PG0950","1134778","1135596","819","ATGGAAAAAATGATCATTACGGCAGCCATCTGCGGTGCAGAGGTTCTGAAAGAGCATAATCCGGCCGTTCCCTACACGGTAGAAGAGTGTGTACGTGAAGCCAAATCGGCCTATGATGCAGGTGCCAGCATCATTCATCTCCATGTGAGATACGATGATGGTACCCCTACTCAAGATAGAAATCGCTTCAAAGAAGTCATGGAAGCCATCAAGGCGGTATGTCCCGATGTAATCATCCAGCCTTCGACAGGAGGTGCTGTGGGCATGACGAATGATGAACGTCTGCAACCGACAGAGCTTTTTCCCGAAATGGCTACTTTGGATTGTGGCACCCTTAACTTCGGCGGTGATGAAGTGTTCACCAATACGGAAAACACGATCAAATATTTCGGGGAGAAAATGATCGAGCGTGGCATCAAACCTGAACTTGAAGTCTTCGACAAGAGCATGATCGACATGGCTCTTCGTCTTCACCGCAAAGGTTATATCCAATCCCCTATGCACTTCGACTTCGTAATGGGTGTAAATGGCGGTATCAGCGGAGAAATGCGTGATTTCGTTTTCCTTCGCGAAAGTATCCCCGCAGATGCCACATATACTGTAGCAGGTGTGGGACGCTATGAGTTTCCCCTCGCGGCACTGGCTATCATTGATGGAGGACATGTGCGTGTAGGTTTCGAAGACAATGTATATATATCCAAAGGAGTTTTAGCTCGCTCTAATGGAGAATTGGTAGAAAAAGTGGTTCGTATGGCCAAGGAAATGGGTCGTGAGATAGCCACTCCGGCAGAAGCCCGTCGGATATTGGGGCTTAGCAAA","5.10","-8.72","30128","MEKMIITAAICGAEVLKEHNPAVPYTVEECVREAKSAYDAGASIIHLHVRYDDGTPTQDRNRFKEVMEAIKAVCPDVIIQPSTGGAVGMTNDERLQPTELFPEMATLDCGTLNFGGDEVFTNTENTIKYFGEKMIERGIKPELEVFDKSMIDMALRLHRKGYIQSPMHFDFVMGVNGGISGEMRDFVFLRESIPADATYTVAGVGRYEFPLAALAIIDGGHVRVGFEDNVYISKGVLARSNGELVEKVVRMAKEMGREIATPAEARRILGLSK","1134778 1135596","TIGR ID: PG1068","conserved hypothetical protein","Cytoplasm","Several significant hits in gapped BLAST; e.g. residues 4-271 are 36% similar to gb|AAB90037.1| conserved hypothetical protein of Archaeoglobus fulgidus, residues 4-271 are 35% similar to emb|CAB03702.1| hypothetical protein Rv1718 of Mycobacterium tuberculosis, residues 3-271 are 33% similar to gb|AAG08772.1|AE004951_6 conserved hypothetical protein of Pseudomonas aeruginosa. ","
InterPro
IPR008567
Family
Protein of unknown function DUF849, prokaryotic
PF05853\"[1-273]TDUF849


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 4-271 are 36% similar to a (PROTEIN CONSERVED) protein domain (PD039706) which is seen in O29058_ARCFU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Mon Feb 5 14:35:44 MST 2001","Mon Feb 5 14:35:44 MST 2001","Mon Feb 5 14:35:44 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","Residues 1 to 273 (E-value = 3.4e-153) place PG0950 in the DUF849 family which is described as Prokaryotic protein of unknown function (DUF849) (PF05853)","","34540804","","","","","","1","","","PG1068" "PG0951","1135641","1136681","1041","ATGCAAAAGAAAGGAAACAAATACGGCACACACCGTGTTTTAGCCCCTCAGGGCGTTCTACCCCAGCCCGCTGAAAAAGTGGACAACAACATGGATGAAATCTACGACAATGAGATTCTTATCGATGTTAAGACTTTGAATATAGACTCTGCAAGTTTCACGCAGATCCATGAACAAGCCGGTGGAGATAAGGCTAAAATCGCCGAAATCATGCTTGGCATTGTAGCCAAACAAGGAAAGCATCGTAACCCTGTTACAGGCTCAGGCGGGATGCTTCTCGGCGTAGTTGAAAAGATCGGCGATGCTCTCAAAGACAAAATCGACTTGAAAGTAGGCGATAAAATTGCCACGCTCGTGTCGCTTTCTCTAACGCCACTCCGCATCGACAAAATCAAGGAAATTCGTCCGGATGTAGATCAAGTGGACATCGAAGGAAAGGCTATTCTCTTCGAAAGCGGTATCTATGCGAAGATTCCTAACGATTTGCCTGAAAAGCTGGCTCTATCGGCACTTGATGTGGCAGGTGCTCCTGCTCAGACAGCCAAATTGGTGAAGCCGGGAGATACGGTACTTATTATCGGTGCAGGTGGCAAGAGCGGTATGCTCTGCTGCTACGAAGCCAAAAAACGCGCCGGTGTAACCGGTAAGGTAATCGGTCTTTGCCACTCACAGAAGAGTACGGATCGCTTGAAAGCTCTCGGTTTCTGCGATCATGTATTCTCTGCCGATGCAACGAAGCCGGTGCCTGTAATGGAAGAGATCGAAAAGCTTACGAATGGAGAGATGTGTGATGTTACGATCAACAACGTAAATATCACCGATACAGAAATGACAAGCATCCTCTGCACGAAGAATGATGGTATCGTCTATTTCTTCTCTATGGCTACAAGTTTCACCAAAGCTGCTTTGGGGGCTGAGGGCGTAGGCAGTGATGTGACCATGATCGTTGGTAATGGCTATACCAAAGGTCATGCTGAAATCACACTGCAGGAGCTTCGAGAATGTGAGGCTTTGCGCAAAGTTTTCACAGAATTGTACGCT","6.00","-3.87","37193","MQKKGNKYGTHRVLAPQGVLPQPAEKVDNNMDEIYDNEILIDVKTLNIDSASFTQIHEQAGGDKAKIAEIMLGIVAKQGKHRNPVTGSGGMLLGVVEKIGDALKDKIDLKVGDKIATLVSLSLTPLRIDKIKEIRPDVDQVDIEGKAILFESGIYAKIPNDLPEKLALSALDVAGAPAQTAKLVKPGDTVLIIGAGGKSGMLCCYEAKKRAGVTGKVIGLCHSQKSTDRLKALGFCDHVFSADATKPVPVMEEIEKLTNGEMCDVTINNVNITDTEMTSILCTKNDGIVYFFSMATSFTKAALGAEGVGSDVTMIVGNGYTKGHAEITLQELRECEALRKVFTELYA","1135641 1136681","Numerous hits to residues 100-250. This may indicate a conserved protein.TIGR ID: PG1069","hypothetical protein","Cytoplasm","Two weak hits in gapped BLAST; e.g. residues 131-241 are 31% similar to gb|AAA81326.1| cP36 of Leishmania amazonensis, residues 131-241 are 30% similar to gb|AAA73554.1| zeta-crystallin NADPH-oxidoreductase of Leishmania amazonensis.","
InterPro
IPR002085
Family
Alcohol dehydrogenase superfamily, zinc-containing
PTHR11695\"[23-64]T\"[82-166]T\"[185-294]TADH_Sf_Zn
InterPro
IPR011032
Domain
GroES-like
SSF50129\"[21-201]TGroES_like
InterPro
IPR013149
Domain
Alcohol dehydrogenase, zinc-binding
PF00107\"[186-334]TADH_zinc_N
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.720\"[152-346]TG3DSA:3.40.50.720
SSF51735\"[177-324]TSSF51735


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Mon Feb 5 15:09:28 MST 2001","Mon Feb 5 15:09:28 MST 2001","Mon Feb 5 15:09:28 MST 2001","Mon Feb 5 15:09:28 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","Residues 19 to 344 (E-value = 3.3e-05) place PG0951 in the ADH_zinc_N family which is described as Zinc-binding dehydrogenase (PF00107)","","34540805","","","","","","1","","","PG1069" "PG0952","1136771","1138018","1248","ATGGCAGAAAGTCGTAGAAAGTATTATTTCCCTGATGTCACCGATGAGCAATGGAACGACTGGCATTGGCAGGTCCTCAATCGAATTGAGACGCTCGACCAGCTGAAAAAGTACGTTACACTCACCGCTGAAGAAGAAGAGGGAGTAAAAGAATCGCTCAAAGTACTCCGAATGGCTATCACACCTTATTATTTGAGTTTGATAGACCCCGAGAATCCTAATTGTCCGATTCGTAAACAAGCCATTCCTACTCATCAGGAACTGGTACGTGCTCCTGAAGATCAGGTAGACCCACTTAGTGAAGATGAAGATTCGCCCGTACCCGGACTGACTCATCGTTATCCGGATCGTGTATTGTTCCTTATCACGGACAAATGTTCGATGTACTGTCGTCATTGTACTCGCCGTCGCTTCGCAGGACAGAAAGATGCTTCTTCTCCTTCTGAGCGCATCGATCGATGCATTGACTATATAGCCAATACACCGACAGTCCGCGATGTTTTGCTATCGGGAGGCGATGCCCTCCTTGTCAGCGACGAACGCTTGGAATACATATTGAAGCGTCTGCGCGAAATACCTCATGTGGAGATTGTTCGTATAGGAAGCCGTACGCCGGTAGTCCTTCCTCAGCGTATAACGCCTCAATTGGTGGATATGCTCAAAAAATATCATCCGGTGTGGCTGAACACTCACTTCAACCACCCGAATGAAGTTACCGAAGAAGCAGTAGAGGCTTGTGAAAGAATGGCCAATGCCGGTATTCCGTTGGGTAACCAAACGGTTTTATTGCGTGGAATCAATGATTGTACACATGTGATGAAGAGATTGGTACATTTGCTGGTAAAGATGCGTGTGCGTCCTTACTATATATATGTATGCGATCTTTCGCTTGGAATAGGTCATTTCCGCACGCCGGTATCTAAAGGAATCGAAATTATCGAAAATTTGCGCGGACACACCTCGGGCTATGCTGTTCCTACCTTTGTGGTAGATGCTCCGGGGGGTGGTGGTAAGATACCTGTAATGCCGAACTATGTTGTATCTCAGTCCCCACGACATGTGGTTCTTCGCAATTATGAAGGTGTTATCACAACCTATACGGAGCCGGAGAATTATCATGAGGAGTGTGATTGTGAGGACTGTCGAGCCGGTAAGCATAAAGAGGGTGTAGCTGCACTTTCCGGAGGTCAGCAGTTGGCTATCGAGCCTTCCGACTTAGCTCGCAAAAAACGCAAGTTTGATAAGAAC","6.90","-0.87","47536","MAESRRKYYFPDVTDEQWNDWHWQVLNRIETLDQLKKYVTLTAEEEEGVKESLKVLRMAITPYYLSLIDPENPNCPIRKQAIPTHQELVRAPEDQVDPLSEDEDSPVPGLTHRYPDRVLFLITDKCSMYCRHCTRRRFAGQKDASSPSERIDRCIDYIANTPTVRDVLLSGGDALLVSDERLEYILKRLREIPHVEIVRIGSRTPVVLPQRITPQLVDMLKKYHPVWLNTHFNHPNEVTEEAVEACERMANAGIPLGNQTVLLRGINDCTHVMKRLVHLLVKMRVRPYYIYVCDLSLGIGHFRTPVSKGIEIIENLRGHTSGYAVPTFVVDAPGGGGKIPVMPNYVVSQSPRHVVLRNYEGVITTYTEPENYHEECDCEDCRAGKHKEGVAALSGGQQLAIEPSDLARKKRKFDKN","1136771 1138018","TIGR ID: PG1070","probable L-lysine 2,3-aminomutase","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 4-411 are 74% similar to gb|AAD43134.1|AF159146_1 L-lysine 2,3-aminomutase of Clostridium subterminale, residues 12-412 are 60% similar to pir||B69904 conserved hypothetical protein yodO of Bacillus subtilis, residues 12-372 are 65% similar to dbj|BAB05974.1| L-lysine 2,3-aminomutase of Bacillus halodurans.","
InterPro
IPR003739
Family
Protein of unknown function DUF160
TIGR00238\"[5-334]TDUF160
InterPro
IPR007197
Domain
Radical SAM
PF04055\"[120-277]TRadical_SAM
noIPR
unintegrated
unintegrated
SSF102114\"[105-357]TSSF102114


","BeTs to 6 clades of COG1509COG name: Uncharacterized ACR, YjeK family (putative lysine 2,3-aminomutase)Functional Class: SThe phylogenetic pattern of COG1509 is -m---Qv-eb-h-----l---Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 12-338 are 66% similar to a (PROTEIN INTERGENIC REGION A) protein domain (PD008727) which is seen in YODO_BACSU.Residues 339-412 are 39% similar to a (HYPOTHETICAL 54.1 KD PROTEIN) protein domain (PD041312) which is seen in YODO_BACSU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Mon Feb 5 15:29:58 MST 2001","Mon Feb 5 15:29:58 MST 2001","Mon Oct 21 16:14:10 2002","","Fri May 4 16:51:27 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri May 4 16:51:27 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 120 to 277 (E-value = 7.1e-17) place PG0952 in the Radical_SAM family which is described as Radical SAM superfamily (PF04055)","Fri May 4 16:51:27 MDT 2001","34540806","","","Ruzicka,F.J., Lieder,K.W. and Frey,P.A. 2000. Lysine 2,3-aminomutase from Clostridium subterminale SB4: mass spectral characterization of cyanogen bromide-treated peptides and cloning, sequencing, and expression of the gene kamA in Escherichia coli. J. Bacteriol. 182 (2): 469-476. PubMed: 10629195.","","Mon Feb 5 15:29:58 MST 2001","1","","","PG1070" "PG0953","1138022","1139116","1095","TTGAATGAAAATAAGCTCCCTCCCCTTTGCAAAGCCATTGGGGAGAGAGTTTGCTTAAAGAGAGAAAGAGAGAAAAAATTGCCTTTTGTAGAAAnAATTATGCAGAGCCGGAGCATATCCATTTTCGGGATGGAGAAGAACACCGGCAAAACAGAAACGCTCAACTATATTATCAGGCGACTCGATGCCTATCGGCATAGGGTTGCCCTTACTTCTATAGGCATAGATGGTGAAAAGAGTGACCAGGTTACTCAGACGGCCAAGCCGGAAATAGTGGTACCTAAAGGGATGATATTTGTTACCTCCGAGCTGCATTTTCTACAAAAAGAACTGATTGCAGAGATTATTGATGTCAGCGAAGATCGGACTGCGCTGGGACGGCTCATCACGGCCTGCTCTTTGGAACCCGGTAAAATTTTGCTCTCAGGGCCTTCCACGACAGGAGGGTTAAGAAAAATGATAACTACCCTATCGAACTCCGGAGTGCAAACGACTATTGTAGATGGAGCTCTTTCTCGCAAGTGTCTGGCATCTCCTGTCGTTACCGATGCTATGATTTTAGCTACCGGAGCTGCTTTGTCCATCAATATACCTCAGTTGGTCCGTAAAACGGCTGCTGTGTATCAATTGATCTCTTTACCCACAGTGGAATCCGAATTGGCAGAGAAATTAGATCCCATCGAACAAGGCATATGGGGGATAGACGAATCGGGTAACGTTCACGACTTAGGGATTCGTTCGGCACTGCTGTTGAATGCATCTAACAGAAATGACCTAACTCGCTTCGGCAACAGAATTTATGTGTCCGGGGCCGTTAGTGATAACTTATTGGAACAGCTTCGCCTCTCTGATGATAAAATCTGTCTCATCATCAGAGATTTTACACGTATGTTTGCTTTGCCGGAAGCAGTAGATCGTTTTCTACAGAGCAAACATGAGATCAAATCTCTGTATGGAGGTAAGCTATTGGCCGTGACAATCAATCCGGTAGCACCCAGCGGGTACAAACTGAAATCCGAAGTGCTGCGCAGAGAGATGGAAAAAGCCCTCGGTATTCCGGTCTACGATGTAAGAGGGTTAAACACGCTTGAATGT","8.40","4.70","89989","LNENKLPPLCKAIGERVCLKREREKKLPFVEXIMQSRSISIFGMEKNTGKTETLNYIIRRLDAYRHRVALTSIGIDGEKSDQVTQTAKPEIVVPKGMIFVTSELHFLQKELIAEIIDVSEDRTALGRLITACSLEPGKILLSGPSTTGGLRKMITTLSNSGVQTTIVDGALSRKCLASPVVTDAMILATGAALSINIPQLVRKTAAVYQLISLPTVESELAEKLDPIEQGIWGIDESGNVHDLGIRSALLLNASNRNDLTRFGNRIYVSGAVSDNLLEQLRLSDDKICLIIRDFTRMFALPEAVDRFLQSKHEIKSLYGGKLLAVTINPVAPSGYKLKSEVLRREMEKALGIPVYDVRGLNTLEC","1138022 1139116","TIGR ID: PG1071","conserved hypothetical protein","Cytoplasm","This sequence corresponds to gi:34397121 in Genbank.Its nearest neighbor in the NR database is gi:20807211 from Thermoanaerobacter tengcongensis MB4.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","Tue Feb 6 13:30:53 MST 2001","Tue Feb 6 13:30:53 MST 2001","","","Fri Mar 4 14:27:21 2005","Fri Mar 4 14:27:21 2005","Tue Feb 6 13:30:53 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Mar 4 14:27:21 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540807","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Fri Mar 4 14:27:21 2005","","1","","","PG1071" "PG0954","1139119","1140507","1389","ATGAAACTACGGGAACAGATAAATAGCATTAGTGGCTTTCGCTATGTAATAGATGAGTTGTGCATACATTCATCTGTAGGGCGACGTTGTCTGATGGAGCAAGAATTCTTGACCGAGGCTTCCGATATTGAAGTGCTTCTTTCTCGTGTAGAAATAGCCATCTCATACCAAGCAGACCAACGAAAACAAAAAGGTCTGGATGAAATTGCACACAAATTAATGCAGCTGCGTGACATCCAAGGGACGATATATTCTCTTTCACGCCACGTAGTTTGCACGGACATTGATTTTTTCGAGATCAAGTTCTTAGCAATTTTAAGTGAAGATATTCGGGATCTGATCCGTTTTTACCAGTTAGATGATCTCTCTTCTCCCCTACCCGATTTGTCGCATATCGTTTCCGTTTTGGATCCGGAGGAAAAGAAAATTCCTCATTTCTATATATACGATGCATATTCGGAGACATTGAGAGAGTTGAGAGACAGGCTCAAAAAAGAAACAAACGAAGACGCCAGGATCGAAATCCGCAATGAAAGTTTGCAGGAGGAAGACATAGTCCGTAAGCGACTTTCTCGCGAGTTGTCCCCTTATGCTGGAGGATTGGCTACAGCTCTGGAATTGTTGGGAGCGATAGATCTGTTATTAGCAAAGGTCAAACTATTCATTCAGCTTGGATGGAGTAAACCGGGTTCTGGTCATAGTGTTACGAACTATATGGGACTGGTACATCCACATGTCCTTAGCCTCCTGGGGAAAAAAGGAGAAAAGTTCCAGCCGGTAGATATAGCCCTACCCTCTCTGCCAACCTTAATTACCGGTGCTAACATGGCAGGAAAAAGTGTGCTGTTGCAAGGAGTTGCATTAGCTCAGATCCTCTATCAATATGGCTTCTATGTGCCGGCACAAAAGGCAGAGATATGCCCTGTAGAAAAAGTGATGCTTTCACTTGGAGATGCACAAGATATTAGACAAGGGCTTTCCTCTTTCGGGGCGGAAATGATGTGTCTTTCGTCCATTGCCGATGAGGCCAGACAGGGAAAGCAACTACTCGTTTTAGTCGATGAACCTGCAAGGACAACGAATCCTGTAGAAGGACAAGCCATTGTCAGTGGACTATTGGCTATATTGAGCAGGTATAAGATCCGATCTCTCGTCACTACGCATTATGGCAGTATAGACATTCCATGTCGCCGCTTGAAAGTGCGTGGTTTTAGAGAAGACAAAGTGAACTTACCTCTACAAGTAAATTCCCTCAGCAAATGTGTGGACTATACGCTTGAAGAAGTGAGCGAAAACGATGTTCCACACGAAGCAATACGCATAGCAGAGATCCTTGGGGTTAACGAGGCTCTTATGACAGAATGCAAACAGTTTTTGAACAACACGAAA","5.70","-7.92","52047","MKLREQINSISGFRYVIDELCIHSSVGRRCLMEQEFLTEASDIEVLLSRVEIAISYQADQRKQKGLDEIAHKLMQLRDIQGTIYSLSRHVVCTDIDFFEIKFLAILSEDIRDLIRFYQLDDLSSPLPDLSHIVSVLDPEEKKIPHFYIYDAYSETLRELRDRLKKETNEDARIEIRNESLQEEDIVRKRLSRELSPYAGGLATALELLGAIDLLLAKVKLFIQLGWSKPGSGHSVTNYMGLVHPHVLSLLGKKGEKFQPVDIALPSLPTLITGANMAGKSVLLQGVALAQILYQYGFYVPAQKAEICPVEKVMLSLGDAQDIRQGLSSFGAEMMCLSSIADEARQGKQLLVLVDEPARTTNPVEGQAIVSGLLAILSRYKIRSLVTTHYGSIDIPCRRLKVRGFREDKVNLPLQVNSLSKCVDYTLEEVSENDVPHEAIRIAEILGVNEALMTECKQFLNNTK","1139113 1140507","TIGR ID: PG1072","DNA mismatch repair protein, MUTS family","Cytoplasm","Numerous hits to DNA mismatch repair protein in gapped BLAST; e.g. residues 131-389 are 29% similar to sp|Q56239|MUTS_THETH DNA mismatch repair protein of Thermus thermophilus, residues 131-389 are 28% similar to gb|AAD01407.1| mismatch repair protein of Thermus caldophilus, residues 203-392 are 31% similar to gb|AAC53034.1| G/T-mismatch binding protein of Mus musculus, residues 211-389 are 31% similar to gb|AAC68387.1| DNA Mismatch Repair of Chlamydia trachomatis.","
InterPro
IPR000432
Domain
DNA mismatch repair protein MutS, C-terminal
PD001263\"[317-392]TMutS_C
PF00488\"[226-429]TMutS_V
SM00534\"[270-460]TMUTSac
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[226-463]TG3DSA:3.40.50.300
PTHR11361\"[271-392]TPTHR11361
SSF52540\"[226-389]TSSF52540


","BeTs to 7 clades of COG0249COG name: MutS-like ATPases involved in mismatch repair, family 2Functional Class: LThe phylogenetic pattern of COG0249 is ----Yqvceb-h----olinxNumber of proteins in this genome belonging to this COG is 2","***** IPB000432 (DNA mismatch repair protein MutS family) with a combined E-value of 1.7e-19. IPB000432B 270-301 IPB000432C 310-358 IPB000432D 383-393","Residues 233-392 are 34% similar to a (PROTEIN DNA REPAIR ATP-BINDING DNA-BINDING MISMATCH MUTS) protein domain (PD001263) which is seen in MSH6_MOUSE.","","Wed Jun 13 15:58:35 MDT 2001","","Wed Jun 13 15:58:35 MDT 2001","Wed Jun 13 15:58:35 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Jun 13 15:58:35 MDT 2001","Wed Jun 13 15:58:35 MDT 2001","","","Tue Feb 6 16:31:37 MST 2001","Mon Jun 18 14:51:24 MDT 2001","Mon Feb 5 15:59:57 MST 2001","Mon Jun 18 14:44:12 MDT 2001","Mon Jun 18 14:44:12 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 178-392 are 28% similar to PG0350, a predicted MUS2 protein, residues 35-393 are 23% similar to PG0084, a DNA mismatch repair protein","Wed Jun 13 16:04:46 MDT 2001","Mon Apr 2 13:54:55 MDT 2001","-47% similar to PDB:1EWQ CRYSTAL STRUCTURE TAQ MUTS COMPLEXED WITH A HETERODUPLEX DNA AT 2.2 A RESOLUTION (E_value = 6.3E_17);-47% similar to PDB:1EWR CRYSTAL STRUCTURE OF TAQ MUTS (E_value = 6.3E_17);-47% similar to PDB:1FW6 CRYSTAL STRUCTURE OF A TAQ MUTS-DNA-ADP TERNARY COMPLEX (E_value = 6.3E_17);-47% similar to PDB:1NNE Crystal Structure of the MutS-ADPBeF3-DNA complex (E_value = 6.3E_17);-53% similar to PDB:1E3M THE CRYSTAL STRUCTURE OF E. COLI MUTS BINDING TO DNA WITH A G:T MISMATCH (E_value = 1.1E_13);","","","Residues 226 to 429 (E-value = 2.2e-10) place PG0954 in the MutS_V family which is described as MutS domain V (PF00488)","Mon Jun 18 14:44:12 MDT 2001","34540808","","","Takamatsu,S., Kato,R. and Kuramitsu,S. 1996. Mismatch DNA recognition protein from an extremely thermophilic bacterium, Thermus thermophilus HB8. Nucleic Acids Res. 24 (4): 640-647. PubMed: 8604304.","","Mon Feb 5 15:59:57 MST 2001","1","","","PG1072" "PG0955","1140538","1142106","1569","ATGCAAAAAAGTAAAGTCGGAATTGATTTCTCCAAGGTAGAATATGCCAGAAGCATTGCCGGAGAAATAGCCGGTAACGTACAGACATTCGTCGAACAATACACGACTGTAGCCGTGGAACGCACCCTCTGTCGCCTAATCGGGATTGATGGAGTGGATGGCAATGCTGTTCCACTGCCCAATGTATTGGTCGACCATCTGAAAGACCGGAATGTTTTGGGGCATGGTGCTCTGTTCTTTTTAGCAAATGGAATAGTTGCTACGGGAAAATCTCCTCAAGAAATTGCTGAAAGTGTGGCTGTCGGCGAAGTAGATCTTACCTCTTACCCCTTCTGTTCTGCCAATGTCATTGCAGATACATTGGCACCGCTCATAACAGGAGGGATGCAAAAAATAGCTGCCAACAGAAAGAGAAGAGAGGACTACATCGAGACTCTCGGAGAAGGGCCTAGACCTTATCTCTACGTTATTGTTGCTACCGGCAATATATATGAAGACGTTGTTCAAGCACAAGCAGCTGCTCGCCAAGGAGCCGATATTATTGCCGTAATACGTACTACGGGACAGAGTTTGCTCGACTATGTTCCTTACGGAGCTACGACAGAAGGATTCGGGGGTACTTTTGCTACACAAGAAAACTTCCGTATCATGCGAAAAGCCTTGGATGAGGTTGGAGAAGAGGTTGGTCGATATATCAGGCTCTGCAACTATTGTTCAGGTCTTTGCATGCCGGAAATAGCCGTAATGGGAGCACTCGAAGGCTTGGATGTAATGCTCAATGATGCTCTCTATGGAATTCTTTTCCGAGACATTAATATGCAACGTACTTTGGTGGATCAATACATGAGTCGTGTTATCAATGGATTTGCCGGCGTTATCATCAATACCGGTGAGGATAACTACCTAACCACTGCTGATGCCGTAGAAGAAGCACATACCGTACTTGCCTCGGATTTGATCAATGAGCAGCTGGCTCTTACAGCCGGATTGCCTTCAGAACAGATGGGGCTTGGACATGCATTTGAAATGGATCCCATGCTCGAGAATGGATTCCTTTTCGAATTGGCTCAAGCACAAATGACCAGAGAAATTTTCCCCAAAGCTCCGCTTAAGTATATGCCTCCCACGAAGTTCATGACCGGCAACATTTTCCGTGGTCATTTACAGGATGCGCTTTTCAATATAATCGGTGTATGGACCTCTCAGGGTATCCAACTGCTCGGTATGCCTACCGAAGCTATCCATACTCCTTTTATGAGCGACCGCTATCTTTCGATCGAAAATGCCAAATATATTTTCTCCAATATGAAGAATATCGGATCGGAAGTTGAGTTCAAAGAAGGCGGTATCGTACAGAGCCGAGCACGTGAAGTGCTTGACAAGACCGTGAATTTGCTTGAAAGATTGAAGGAAGAAGGTCTCTTCTCTGCTTTGGAAAAAGGTATTTTTGGTGATGTAAAACGCCCGATGAACGGAGGAAAAGGTTTGAGCGGTGTTGCCAAGAAGGAATTACACTACTACAACCCGACAATCGAGCTGATGAAAAACTTTAATATGAGTGGTAAGTTA","4.90","-14.50","57345","MQKSKVGIDFSKVEYARSIAGEIAGNVQTFVEQYTTVAVERTLCRLIGIDGVDGNAVPLPNVLVDHLKDRNVLGHGALFFLANGIVATGKSPQEIAESVAVGEVDLTSYPFCSANVIADTLAPLITGGMQKIAANRKRREDYIETLGEGPRPYLYVIVATGNIYEDVVQAQAAARQGADIIAVIRTTGQSLLDYVPYGATTEGFGGTFATQENFRIMRKALDEVGEEVGRYIRLCNYCSGLCMPEIAVMGALEGLDVMLNDALYGILFRDINMQRTLVDQYMSRVINGFAGVIINTGEDNYLTTADAVEEAHTVLASDLINEQLALTAGLPSEQMGLGHAFEMDPMLENGFLFELAQAQMTREIFPKAPLKYMPPTKFMTGNIFRGHLQDALFNIIGVWTSQGIQLLGMPTEAIHTPFMSDRYLSIENAKYIFSNMKNIGSEVEFKEGGIVQSRAREVLDKTVNLLERLKEEGLFSALEKGIFGDVKRPMNGGKGLSGVAKKELHYYNPTIELMKNFNMSGKL","1140538 1142106","The beta subunit is immediately downstream at PG0956.TIGR ID: PG1073","D-lysine 5,6-aminomutase alpha subunit","Cytoplasm","One significant hit to D-lysine 5,6-aminomutase alpha subunit protein in gapped BLAST; e.g. residues 3-516 are 63% similar to gbAAC79717.1 D-lysine 5,6-aminomutase alpha subunit of Clostridium sticklandii.","
InterPro
IPR015130
Domain
D-Lysine 5,6-aminomutase alpha subunit
PF09043\"[6-514]TLys-AminoMut_A
noIPR
unintegrated
unintegrated
G3DSA:3.20.20.440\"[2-517]TG3DSA:3.20.20.440


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Thu Mar 28 14:53:15 2002","Mon Feb 5 16:13:09 MST 2001","Tue Jul 29 19:00:15 2008","Mon Feb 5 16:13:09 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Jul 29 19:00:15 2008","-76% similar to PDB:1XRS Crystal structure of Lysine 5,6-Aminomutase in complex with PLP, cobalamin, and 5'-deoxyadenosine (E_value = );-43% similar to PDB:1BHY LOW TEMPERATURE MIDDLE RESOLUTION STRUCTURE OF P64K FROM MASC DATA (E_value = );-43% similar to PDB:1OJT STRUCTURE OF DIHYDROLIPOAMIDE DEHYDROGENASE (E_value = );","","","No significant hits to the Pfam 11.0 database","Fri May 4 16:54:41 MDT 2001","34540809","","","Chang,C.H. and Frey,P.A. 2000. Cloning, sequencing, heterologous expression, purification, and characterization of adenosylcobalamin-dependent D-lysine 5,6-aminomutase from Clostridium sticklandii. J. Biol. Chem. 275 (1): 106-114. PubMed: 10617592. ","","Thu Feb 22 09:05:33 MST 2001","1","","","PG1073" "PG0956","1142106","1142894","789","ATGAGCGGTGGACTATATTCGACAGAAGGAAGAGATTTCGATCAGACATTAGATCTGTCGCGCATCAAGCCCTATGGCGACACGATGAACGACGGTAAGGTGCAGCTTAGTTTTACCTTACCTGTTCCGGCCGGAGATGAAGCCATCGAAGCAGCCAAGCAGCTCATCAAGAAAATGGGGATGCAGAATCCTCAAGTAGTGTTCTTCCGCGAACTGACAGAAGGTTTTACTTTTTTCAACTGTTATGGCAGCTGCGAACATACGGTAGACTATAGCTCTATCTATGTGCCGAAGGTAGAATCTACTAAATGGGATATGGCTGAAACGGATGACTTTATCCGTGAGAATATCGGCCGAAAGATAGTAGTGGTTGGAGCCAGTACTGGCACTGATGCTCATACGGTAGGTATTGATGCCATCATGAATATGAAAGGCTTTGCCGGCCATTATGGTTTGGAACGCTATGAAATGATCGAAGCATACAATCTTGGCAGTCAGGTTCCGAATGAAGAATTTATTGCCAAAGGAATCGAACTGAATGCCGATGCTCTTTTGGTATCTCAAACAGTAACACAAAAAGATGTGCATATCAAGAATCTGATAGAGCTGGTCGAACTCATGGAGGCAGAAGGTCTGAGAGATAAGATGATCTTGGCCTGTGGAGGGCCTCGTATCACCTATGAATTGGCCAAAGAGCTTGGCTATGATGCAGGATTCGGTGCCAATACATATGCTGATGATGTTGCTTCATTCATCGCTCAGGAGTTTCATAAGAGAATGAATAACAAA","4.60","-13.92","29191","MSGGLYSTEGRDFDQTLDLSRIKPYGDTMNDGKVQLSFTLPVPAGDEAIEAAKQLIKKMGMQNPQVVFFRELTEGFTFFNCYGSCEHTVDYSSIYVPKVESTKWDMAETDDFIRENIGRKIVVVGASTGTDAHTVGIDAIMNMKGFAGHYGLERYEMIEAYNLGSQVPNEEFIAKGIELNADALLVSQTVTQKDVHIKNLIELVELMEAEGLRDKMILACGGPRITYELAKELGYDAGFGANTYADDVASFIAQEFHKRMNNK","1142106 1142894","The alpha subunit is immediately upstream at PG0955.TIGR ID: PG1074","D-lysine 5,6-aminomutase beta subunit","Cytoplasm","One significant hit and two weak hits in gapped BLAST; e.g. residues 1-262 are 66% similar to gbAAC79718.1 D-lysine 5,6-aminomutase beta subunit of Clostridium sticklandii, residues 122-254 are 28% similar to gbAAD14629.1 dimethylamine corrinoid protein MtbC of Methanosarcina barkeri, residues 122-236 are 28% similar to gbAAD14631.1 trimethylamine corrinoid protein MttC of Methanosarcina barkeri. ","
InterPro
IPR006158
Domain
Cobalamin (vitamin B12)-binding
G3DSA:3.40.50.280\"[102-262]TB12_bd
PF02310\"[121-254]TB12-binding
noIPR
unintegrated
unintegrated
G3DSA:3.30.30.60\"[33-84]TG3DSA:3.30.30.60
PTHR21091\"[40-261]TPTHR21091
PTHR21091:SF8\"[40-261]TPTHR21091:SF8
SSF52242\"[118-259]TSSF52242


","BeTs to 3 clades of COG1410COG name: Methionine synthase I, cobalamin-binding domainFunctional Class: EThe phylogenetic pattern of COG1410 is A-t---vce-rh---------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 1-119 are 56% similar to a (D-LYSINE 5,6-AMINOMUTASE BETA SUBUNIT) protein domain (PD202522) which is seen in Q9ZFE5_CLOST.Residues 120-251 are 78% similar to a (COBALT MUTASE VITAMIN B12 METHYLTRANSFERASE PROTEIN) protein domain (PD002527) which is seen in Q9ZFE5_CLOST.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Thu Mar 28 14:52:40 2002","Thu Feb 22 12:19:34 MST 2001","Tue Jul 29 18:59:48 2008","Tue Mar 26 17:55:03 2002","","Thu Feb 22 09:09:43 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Jul 29 18:59:48 2008","-80% similar to PDB:1XRS Crystal structure of Lysine 5,6-Aminomutase in complex with PLP, cobalamin, and 5'-deoxyadenosine (E_value = 7.1E_99);","","","Residues 121 to 254 (E-value = 1.1e-07) place PG0956 in the B12-binding family which is described as B12 binding domain (PF02310)","Tue Mar 26 17:55:03 2002","34540810","","","Chang,C.H. and Frey,P.A. 2000. Cloning, sequencing, heterologous expression, purification, and characterization of adenosylcobalamin-dependent D-lysine 5,6-aminomutase from Clostridium sticklandii. J. Biol. Chem. 275 (1): 106-114. PubMed: 10617592.","Thu Feb 22 09:09:43 MST 2001","Thu Feb 22 09:09:43 MST 2001","1","","","PG1074" "PG0957","1142921","1143580","660","ATGGAAAAAGATCAAATCAGAGAAGTGATCGCCAAGCGTGTTGCCCTCGAATTGAAAGATGGTGATGTGGTCAACCTCGGTATAGGTCTGCCGACGATGGTGCCCAATTACCTAAAACCCGGAGTGCAAGTATATTTGCAGTCTGAAAATGGCATGATTGGGATGGGCCCTGCTCCGGAAACAGGCAAAGAAGATCCTTATCTGATCAATGCAGGGGGAGGCTCCATTACGGCTATTCCGGGGGCTGCTTCATTTGATAGTGCTACCTCATTTGCCATCATTCGTGGTGGGCATGTGGATGTTAGTGTACTCGGAGCACTGCAAGTAGACGAAAATGGAGACTTGGCCAACTGGCTGATTCCCGGCAAGAAAGCACCCGGTATGGGAGGAGCCATGGATTTGCTGATAGGAACCCGCAAGGTAATTTTAGCTATGGAGCATACTGCCAAGGGTAACCCCAAAATCATGAAAAAATGCTCTTTGCCACTTACGGCAAAAGGACAAGTAAACTTGATTATCACAGAAATGTGTGTGATCGAAGTGTGCCCGGAAAAAGGCCTTGTCGTAACAGAAATACATCCGGATTTTACAGCAGAACAAGTACAAGCTGCAACTGAAGCTTCATTGACTTTTGCTTCTGAGATCATCCCGATGCAACAA","4.90","-6.42","23177","MEKDQIREVIAKRVALELKDGDVVNLGIGLPTMVPNYLKPGVQVYLQSENGMIGMGPAPETGKEDPYLINAGGGSITAIPGAASFDSATSFAIIRGGHVDVSVLGALQVDENGDLANWLIPGKKAPGMGGAMDLLIGTRKVILAMEHTAKGNPKIMKKCSLPLTAKGQVNLIITEMCVIEVCPEKGLVVTEIHPDFTAEQVQAATEASLTFASEIIPMQQ","1142921 1143580","TIGR ID: PG1075","acetoacetate:butyrate/acetate coenzyme A transferase","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 1-209 are 58% similar to gb|AAD54948.1|AF157306_3 acetoacetate:butyrate/acetate coenzyme A transferase of Clostridium beijerinckii, residues 2-218 are 55% similar to gb|AAB53233.1| acetoacetyl-CoA:acetate/butyrate:CoA-transferase subunit of Clostridium acetobutylicum, residues 7-216 are 56% similar to gb|AAD40813.1|AF109386_2 succinyl CoA:3-oxoadipate CoA transferase beta subunit of Streptomyces sp. 2065.","
InterPro
IPR004165
Family
Coenzyme A transferase
PTHR13707\"[6-220]TCoA_trans
PF01144\"[7-204]TCoA_trans
InterPro
IPR012791
Domain
3-oxoacid CoA-transferase, subunit B
TIGR02428\"[5-211]TpcaJ_scoB_fam
noIPR
unintegrated
unintegrated
G3DSA:3.40.810.20\"[4-220]TG3DSA:3.40.810.20
SSF100950\"[4-220]TSSF100950


","BeTs to 4 clades of COG2057COG name: Coenzyme A transferases, subunit BFunctional Class: IThe phylogenetic pattern of COG2057 is --------EBrhuj-------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 7-209 are 57% similar to a (TRANSFERASE COA-TRANSFERASE SUBUNIT B) protein domain (PD004976) which is seen in CTFB_CLOAB.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Feb 22 12:32:58 MST 2001","Mon Feb 5 17:02:18 MST 2001","Mon Feb 5 17:02:18 MST 2001","","Thu Feb 22 09:15:08 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 22 09:15:08 MST 2001","-70% similar to PDB:1M3E Succinyl-COA:3-ketoacid COA transferase from pig heart (selenomethionine) (E_value = 9.3E_59);-70% similar to PDB:1O9L SUCCINATE:COENZYME-A TRANSFERASE (PIG HEART) (E_value = 9.3E_59);-70% similar to PDB:1OOY SUCCINYL-COA:3-KETOACID COA TRANSFERASE FROM PIG HEART (E_value = 9.3E_59);-70% similar to PDB:1OOZ Deletion mutant of SUCCINYL-COA:3-KETOACID COA TRANSFERASE FROM PIG HEART (E_value = 9.3E_59);-70% similar to PDB:1OPE Deletion mutant of SUCCINYL-COA:3-KETOACID COA TRANSFERASE FROM PIG HEART (E_value = 9.3E_59);","","","Residues 7 to 204 (E-value = 2.3e-56) place PG0957 in the CoA_trans family which is described as Coenzyme A transferase (PF01144)","Thu Feb 22 09:15:08 MST 2001","34540811","","","","","","1","","","PG1075" "PG0958","1143628","1144764","1137","ATGAACTTTTCTCAGACACCCCAAGAACAATTGTTTCTTGAGATGATCCGCAGTTTCGCCGAGAAAGAAGTAAAACCTCTGGCGGCAGAAATTGACGAGCAGGAACGTTTCCCCATCGAAACAGTAAAGAAGATGGGCGAAATCGGACTGATGGGCATCCCTTTCCCCGTTGAATACGGTGGTGCCGGCGGTACAAACGTAATGTATTCAATGGCAGTGGAGGAACTAAGCCGTGTATGTGCTACCACAGGCGTGGTTCTCTCTGCACACACATCTTTGTGCGCAGCTCCCATCTACGAAAATGGAACAGAAGAACAAAAGATGAAGTATTTGCCGAAACTCTGTTCTGGCGAATGGATCGGTGCATTTGGACTTACCGAACCCAATGCAGGTACGGATGCTGCTGCTCAGCAAACTTTTGCTGAAGAAAAGGAAGATCATTTCGTACTTAACGGTAACAAGATTTTTATCACCAATGCCGAATATGCTCACGTATACGTGGTATTTGCCATGACAGATAAGAGCCAGGGCACACGTGGTATCACCGCTTTCATCGTTGAAAAAGGAACTCCCGGGTTCTCTATCGGAAAGAAAGAGCTTAAGATGGGTATCCGTGGTTCGGCTACATGCGAACTTATTTTTGAAAACTGTATCGTCCCCAAAGAGAATCTTCTCGGTCGCGTAGGCGGTGGCTTCAAGATCGCCATGAAAACCCTTGATGGCGGACGTATCGGTATCGCATCTCAGGCCCTCGGTATTGCACAGGGAGCTATGGACGAGACGGTGAAGTACACCAAAGAGCGTAAACAATTCGGTCGCAGCATCGCACAATTCCAGAACACGCAATTCCAACTCGCCGACTTGCAATGCCGTATTCAGGCATCTCGTTTGCTGGTTCGTTTGGCAAGCTGGAAGAAGGACATGAAGATGCCCTATACGATGGAGTCGGCTCAAGCCAAACTCTATTGCGCCGAAACGGCTATGGATATGACTACGAAAGCGGTTCAGTTCCACGGAGGATATGGCTATACTCGTGAGTATCCGGTAGAGCGTATGATGCGCGATGCTAAGATCACTGAGATTTATGAAGGTACCAGCGAAGTTCAACGCTTGGTAATCGCATCCAACTTATTAAAA","6.50","-1.34","41900","MNFSQTPQEQLFLEMIRSFAEKEVKPLAAEIDEQERFPIETVKKMGEIGLMGIPFPVEYGGAGGTNVMYSMAVEELSRVCATTGVVLSAHTSLCAAPIYENGTEEQKMKYLPKLCSGEWIGAFGLTEPNAGTDAAAQQTFAEEKEDHFVLNGNKIFITNAEYAHVYVVFAMTDKSQGTRGITAFIVEKGTPGFSIGKKELKMGIRGSATCELIFENCIVPKENLLGRVGGGFKIAMKTLDGGRIGIASQALGIAQGAMDETVKYTKERKQFGRSIAQFQNTQFQLADLQCRIQASRLLVRLASWKKDMKMPYTMESAQAKLYCAETAMDMTTKAVQFHGGYGYTREYPVERMMRDAKITEIYEGTSEVQRLVIASNLLK","1143628 1144764","Gapped BLAST returned numerous significant hits to butyryl-CoA dehydrogenase and acyl-CoA dehydrogenase.TIGR ID: PG1076","butyryl-CoA dehydrogenase","Cytoplasm","Numerous significant hits to coenzyme A dehydrogenase protein in gapped BLAST; e.g. residues 1-379 are 66% similar to pir||T45286 butyryl-CoA dehydrogenase of Clostridium thermosaccharolyticum, residues 1-379 are 63% similar to gb|AAA95968.1| putative butyryl-CoA dehydrogenase of Clostridium acetobutylicum, residues 1-378 are 58% similar to dbj|BAB07517.1| acyl-CoA dehydrogenase of Bacillus halodurans. ","
InterPro
IPR006089
Family
Acyl-CoA dehydrogenase
PS00072\"[124-136]TACYL_COA_DH_1
PS00073\"[336-355]?ACYL_COA_DH_2
InterPro
IPR006090
Domain
Acyl-CoA dehydrogenase, type 1
PF00441\"[229-378]TAcyl-CoA_dh_1
InterPro
IPR006091
Domain
Acyl-CoA dehydrogenase/oxidase, central region
G3DSA:2.40.110.10\"[121-226]TAcyl_CoA_DH/ox_M
PF02770\"[122-173]TAcyl-CoA_dh_M
InterPro
IPR006092
Domain
Acyl-CoA dehydrogenase, N-terminal
PF02771\"[6-118]TAcyl-CoA_dh_N
InterPro
IPR009075
Domain
Acyl-CoA dehydrogenase/oxidase C-terminal
SSF47203\"[229-379]TAcylCoADH_C_like
InterPro
IPR009100
Domain
Acyl-CoA dehydrogenase/oxidase, middle and N-terminal
SSF56645\"[1-228]TAcylCoA_dehyd_NM
InterPro
IPR013764
Domain
Acyl-CoA dehydrogenase, type1/2, C-terminal
G3DSA:1.20.140.10\"[230-378]TAcylCoA_DH_1/2_C
InterPro
IPR013786
Domain
Acyl-CoA dehydrogenase/oxidase, N-terminal
G3DSA:1.10.540.10\"[1-120]TAcylCoA_DH/ox_N
noIPR
unintegrated
unintegrated
PTHR10909\"[76-378]TPTHR10909
PTHR10909:SF10\"[76-378]TPTHR10909:SF10


","BeTs to 4 clades of COG1960COG name: Acyl-CoA dehydrogenasesFunctional Class: IThe phylogenetic pattern of COG1960 is A-------EBR----------Number of proteins in this genome belonging to this COG is 2","***** IPB001552 (Acyl-CoA dehydrogenase) with a combined E-value of 1.9e-107. IPB001552A 120-130 IPB001552B 145-170 IPB001552C 192-232 IPB001552D 246-288 IPB001552E 319-373 IPB001552A 48-58","Residues 1-40 are 60% similar to a (DEHYDROGENASE ACYL-COA OXIDOREDUCTASE) protein domain (PD002408) which is seen in ACDS_CLOAB.Residues 174-379 are 24% similar to a (OXIDASE ACYL-COA OXIDOREDUCTASE A ACYL-COENZYME FATTY) protein domain (PD002553) which is seen in O65201_ARATH.Residues 255-377 are 64% similar to a (DEHYDROGENASE PROTEIN ACYL-COA OXIDOREDUCTASE) protein domain (PD000558) which is seen in P97088_BBBBB.Residues 118-244 are 74% similar to a (DEHYDROGENASE PROTEIN ACYL-COA OXIDOREDUCTASE) protein domain (PD000396) which is seen in P97088_BBBBB.Residues 91-303 are 22% similar to a (PROTEIN ACYL-COA DEHYDROGENASE ACD-3) protein domain (PD043493) which is seen in P96414_MYCTU.Residues 43-117 are 69% similar to a (DEHYDROGENASE ACYL-COA PROTEIN OXIDOREDUCTASE) protein domain (PD000798) which is seen in ACDS_CLOAB.Residues 12-375 are 22% similar to a (SIMILARITY TO VERY-LONG-CHAIN ACYL) protein domain (PD148608) which is seen in Q18281_CAEEL.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Tue Feb 6 08:36:57 MST 2001","Thu Feb 22 12:35:10 MST 2001","Tue Feb 6 08:21:38 MST 2001","Mon Feb 5 17:18:31 MST 2001","Thu Feb 22 09:21:43 MST 2001","Thu Feb 22 09:21:43 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 40-369 are 33% similar to PG0696, a predicted acyl-CoA dehydrogenase (coenzyme A dehydrogenase).","Mon Apr 2 14:07:32 MDT 2001","Thu Feb 22 09:21:43 MST 2001","-71% similar to PDB:1BUC THREE-DIMENSIONAL STRUCTURE OF BUTYRYL-COA DEHYDROGENASE FROM MEGASPHAERA ELSDENII (E_value = 2.6E_106);-70% similar to PDB:1JQI Crystal Structure of Rat Short Chain Acyl-CoA Dehydrogenase Complexed With Acetoacetyl-CoA (E_value = 2.4E_104);-66% similar to PDB:2DVL Crystal structure of project TT0160 from Thermus thermophilus HB8 (E_value = 1.7E_89);-62% similar to PDB:1WS9 Crystal structure of project ID TT0172 from Thermus thermophilus HB8 (E_value = 4.7E_84);-62% similar to PDB:2CX9 Crystal structure of acyl-CoA dehydrogenase (E_value = 4.7E_84);","","","Residues 6 to 120 (E-value = 5e-47) place PG0958 in the Acyl-CoA_dh_N family which is described as Acyl-CoA dehydrogenase, N-terminal domain (PF02771)Residues 124 to 225 (E-value = 1.4e-55) place PG0958 in the Acyl-CoA_dh_M family which is described as Acyl-CoA dehydrogenase, middle domain (PF02770)Residues 229 to 378 (E-value = 4.6e-80) place PG0958 in the Acyl-CoA_dh family which is described as Acyl-CoA dehydrogenase, C-terminal domain (PF00441)","Wed Mar 14 15:23:57 MST 2001","34540812","","","","","","1","","","PG1076" "PG0959","1144782","1145564","783","ATGAATATCGTTGTTTGTATCAAACAGGTACCCGATACTACCGAAATCAAATTGGATCCTGTAAAAGGCACGCTCATTCGTGACGGTGTGCCCAGTATCATGAACCCCGATGACAAGGGAGCTTTGGAACAGGCTCTTCGCTTCAAGGACACACACAATGCTCACGTAACTGTGATCACCATGGGACCGCCACAGGCAGAAGCTATCCTGCGCGAAGCATATGCCATGGGTGCAGATCATGCCATCCTTGTCAGCGATCGTAAGTTCGGTGGAGCCGACACATTGGCCACAAGTTACACACTCTCTCAAGCTTTGAGAAAGATCGACCACGATCTGATTATCGCCGGTCGTCAAGCTATCGACGGTGATACGGCTCAGGTAGGACCTCAGATTGCCGAGCAACTTGACCTGCCACAGATCACATACGTGGAAGAAGCCACATTCGATGGCAAGCAAACTCTGACTGTTCGCAAGAGCACGGAAGAAGGACATGAGGTTTTGGAAGTAGAGCTTCCTTGTATGCTCACTTTATTGGCTACGGCTAATAAGCCTCGCTACATGCGCGTTCGTGGCATTATGGAAACCTTCGACAGACCTATTGAGTGCTGGGGAGCAAGCGACATTGATGTTGATCCGGAAAGAATCGGTTTGGCCGGTTCTCCCACGAGCGTCAAGAAGTCGTTCACTAAGGGAGCCAAGGCCATGGGAGCACTGCATGAAGATATCACTCCCGAAGAAGCTGCTGACATTATCTTCAATAAACTGAAAGAGAAATTCATCATC","4.90","-9.68","28537","MNIVVCIKQVPDTTEIKLDPVKGTLIRDGVPSIMNPDDKGALEQALRFKDTHNAHVTVITMGPPQAEAILREAYAMGADHAILVSDRKFGGADTLATSYTLSQALRKIDHDLIIAGRQAIDGDTAQVGPQIAEQLDLPQITYVEEATFDGKQTLTVRKSTEEGHEVLEVELPCMLTLLATANKPRYMRVRGIMETFDRPIECWGASDIDVDPERIGLAGSPTSVKKSFTKGAKAMGALHEDITPEEAADIIFNKLKEKFII","1144782 1145564","The electron transfer flavoprotein beta-subunit protein is related to the FixA protein. The alpha subunit is immediately downstream,PG0960.Veith et al. (2002) identified this protein by two-dimensional gel electrophoresis and peptide mass fingerprinting of outer membranes prepared from strain W50.TIGR ID: PG1077","electron transfer flavoprotein beta-subunit (beta-eft) (electron transfer flavoprotein small subunit) (ETFSS)","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 1-251 are 60% similar to gb|AAA95969.1| putative b-subunit of electron-transfer flavoprotein of Clostridium acetobutylicum, residues 1-261 are 49% similar to emb|CAB07497.1| electron transfer flavoprotein beta-subunit of Thermoanaerobacterium thermosaccharolyticum, residues 1-261 are 47% similar to gb|AAC31169.1| electron-transferring flavoprotein b subunit of Megasphaera elsdenii, residues 1-255 are 47% similar to gb|AAB91890.1| FixA of Rhizobium sp. NGR234.","
InterPro
IPR000049
Domain
Electron transfer flavoprotein, beta-subunit, core
PD003528\"[135-208]TETF_beta
PS01065\"[156-176]?ETF_BETA
InterPro
IPR012255
Family
Electron transfer flavoprotein, beta subunit
PIRSF000090\"[1-261]TBeta-ETF
PTHR21294\"[1-261]TBeta-ETF
InterPro
IPR014729
Domain
Rossmann-like alpha/beta/alpha sandwich fold
G3DSA:3.40.50.620\"[1-261]TRossmann-like_a/b/a_fold
InterPro
IPR014730
Domain
Electron transfer flavoprotein, alpha/beta-subunit, N-terminal
PF01012\"[22-212]TETF
noIPR
unintegrated
unintegrated
SSF52402\"[1-258]TSSF52402


","BeTs to 6 clades of COG2086COG name: Electron transfer flavoprotein beta-subunitFunctional Class: CThe phylogenetic pattern of COG2086 is a---y-v-Ebr----------Number of proteins in this genome belonging to this COG is 2","***** IPB000049 (Electron transfer flavoprotein beta-subunit) with a combined E-value of 4.2e-72. IPB000049A 1-12 IPB000049B 34-50 IPB000049C 56-81 IPB000049D 111-145 IPB000049E 157-207","Residues 1-251 are 60% similar to a (ELECTRON TRANSPORT FLAVOPROTEIN TRANSFER) protein domain (PD003528) which is seen in ETFB_CLOAB.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Wed Mar 27 10:51:39 2002","Thu Feb 22 09:28:56 MST 2001","Tue Feb 6 09:13:06 MST 2001","Thu Feb 7 17:51:38 2002","Thu Feb 22 09:28:56 MST 2001","Thu Feb 22 09:28:56 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1-225 are 44% similar to PG0698, a predicted electron transfer flavoprotein beta subunit.","Mon Apr 2 14:12:51 MDT 2001","Thu Feb 22 09:28:56 MST 2001","-50% similar to PDB:1O94 TERNARY COMPLEX BETWEEN TRIMETHYLAMINE DEHYDROGENASE AND ELECTRON TRANSFERRING FLAVOPROTEIN (E_value = 2.1E_23);-50% similar to PDB:1O95 TERNARY COMPLEX BETWEEN TRIMETHYLAMINE DEHYDROGENASE AND ELECTRON TRANSFERRING FLAVOPROTEIN (E_value = 2.1E_23);-50% similar to PDB:1O96 STRUCTURE OF ELECTRON TRANSFERRING FLAVOPROTEIN FOR METHYLOPHILUS METHYLOTROPHUS. (E_value = 2.1E_23);-50% similar to PDB:1O97 STRUCTURE OF ELECTRON TRANSFERRING FLAVOPROTEIN FROM METHYLOPHILUS METHYLOTROPHUS, RECOGNITION LOOP REMOVED BY LIMITED PROTEOLYSIS (E_value = 2.1E_23);-53% similar to PDB:2A1T Structure of the human MCAD:ETF E165betaA complex (E_value = 2.1E_23);","","","Residues 1 to 251 (E-value = 1.1e-100) place PG0959 in the ETF_beta family which is described as Electron transfer flavoprotein beta subunit (PF01012)","Mon Apr 2 14:12:51 MDT 2001","34540813","","Veith,P., Talbo,G., Slakeski,N., Dashper,S., Moore,C.,Paolini,R., Reynolds,E., Major outer membrane proteins and proteolytic processing of RgpA, and Kgp of Porphyromonas gingivalis W50, Biochem J. 2002 (in press).","O'Neill,H., Mayhew,S.G. and Butler,G. 1998. Cloning and analysis of the genes for a novel electron-transferring flavoprotein from Megasphaera elsdenii. Expression and characterization of the recombinant protein. J. Biol. Chem. 273 (33): 21015-21024. PubMed: 9694853.Boynton,Z.L., Bennet,G.N. and Rudolph,F.B. 1996. Cloning, sequencing, and expression of clustered genes encoding beta-hydroxybutyryl-coenzyme A (CoA) dehydrogenase, crotonase, and butyryl-CoA dehydrogenase from Clostridium acetobutylicum ATCC 824. JOURNAL J. Bacteriol. 178 (11): 3015-3024 (1996). PubMed: 8655474.","Thu Feb 7 17:51:38 2002","Wed Mar 27 10:51:39 2002","1","","","PG1077" "PG0960","1145581","1146585","1005","ATGGATAAGGAATTATATAAAGGTGTTTTCGTCTTCGCAGAACAACGCGAAGGAGTGATTCAGAACGTAGCCTTCGAACTCATCGGAAAGGCTCGTGAATTGGCAGACACCATCGGAGAAAAAGTAACGGCAATTCTTTGTGGCTATAAGGTTGCTGACTTGCCTAAGGAACTTATCGCTGCCGGTGCCGATACGGTGCTTGTCGTAGACGATGAGAAGCTCGAGAACTACCTTACTGAGCCTTACGCTCAGGCCATTACCCAAATTCTTCAGGACAAGAAGCCTGAGATCGTACTCTTCGGTGCTACGACTATTGGTCGCGACCTCGGTCCCCGTCTCTCTTCTCGCTTGCGTACAGGTCTTACAGCAGACTGTACATCGCTTGAGATCGGTGACGAACGCAATCTGCTGATGACACGTCCGGCTTTCGGCGGTAACCTTATGGCTACGATTATCAGCAAGGAGCATCGTCCTCAGATGTCTACGGTTCGTCCCGGTGTTATGCGTCGTAAGGCTATGGACTACAACCGCCAGGGTATGGTTGAGAACGTAACCATCACGTTTGACACAGCCAAGTTCCGTGTTCGCCTGATCAAGAAAGAGCGTGAAGACAAGAATATGGTGGACATCACGGAAGCTCACATCCTTGTCAGTGGTGGTCGTGGCGTTGGTTCACAAGACGGCTTCAGCAAGCTGGCCGAACTGGCTCAGCAGATCCATGCAGAGGTTTCTTCTTCTCGCGCTATGGTCGATGCCGGTCTTATCGGTCATGAACGTCAGGTAGGACAAACGGGTAAGACTGTTCGCCCCGACATCTACATGGCCTTTGGTATCTCAGGTGCCATCCAGCACTTGGCCGGTATGGAAGAGAGCGATTATATCATTGCCATCAACAAGGACAAATTCGCTCCGATCTTCCAGGTGGCCGATCTTGGTGTAGTCGGCGACTTGCACAAGATTGTACCCATTCTGACGGCTAAGCTGCGTTCTGCCATGCAGGACAAG","6.80","-0.63","36791","MDKELYKGVFVFAEQREGVIQNVAFELIGKARELADTIGEKVTAILCGYKVADLPKELIAAGADTVLVVDDEKLENYLTEPYAQAITQILQDKKPEIVLFGATTIGRDLGPRLSSRLRTGLTADCTSLEIGDERNLLMTRPAFGGNLMATIISKEHRPQMSTVRPGVMRRKAMDYNRQGMVENVTITFDTAKFRVRLIKKEREDKNMVDITEAHILVSGGRGVGSQDGFSKLAELAQQIHAEVSSSRAMVDAGLIGHERQVGQTGKTVRPDIYMAFGISGAIQHLAGMEESDYIIAINKDKFAPIFQVADLGVVGDLHKIVPILTAKLRSAMQDK","1145581 1146585","The electron-transfer flavoprotein alpha-subunit protein is related to the FixB protein. The beta subunit is immediately upstream, PG0959TIGR ID: PG1078","electron-transfer flavoprotein alpha-subunit (ALPHA-ETF) (electron transfer flavoprotein large subunit) (ETFLS)","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 1-331 are 52% similar to gb|AAA95970.1| putative a-subunit of electron-transfer flavoprotein of Clostridium acetobutylicum, residues 6-329 are 53% similar to emb|CAB04791.1| electron-transfer flavoprotein alpha-subunit of Thermoanaerobacterium thermosaccharolyticum, residues 6-329 are 52% similar to gb|AAA23237.1| FIXB of Clostridium acetobutylicum, residues 1-329 are 50% similar to gb|AAC31170.1| electron-transferring flavoprotein a subunit.","
InterPro
IPR001308
Family
Electron transfer flavoprotein, alpha subunit
PIRSF000089\"[7-333]TElectra_flavoP_a
InterPro
IPR014729
Domain
Rossmann-like alpha/beta/alpha sandwich fold
G3DSA:3.40.50.620\"[7-197]TRossmann-like_a/b/a_fold
InterPro
IPR014730
Domain
Electron transfer flavoprotein, alpha/beta-subunit, N-terminal
PF01012\"[8-168]TETF
InterPro
IPR014731
Domain
Electron transfer flavoprotein, alpha subunit, C-terminal
PF00766\"[207-292]TETF_alpha
PS00696\"[272-298]?ETF_ALPHA
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.1220\"[200-330]TG3DSA:3.40.50.1220
PTHR10909\"[1-329]TPTHR10909
PTHR10909:SF4\"[1-329]TPTHR10909:SF4
SSF52402\"[7-204]TSSF52402
SSF52467\"[205-328]TSSF52467


","BeTs to 6 clades of COG2025COG name: Electron transfer flavoprotein alpha-subunitFunctional Class: CThe phylogenetic pattern of COG2025 is a---y-v-Ebr----------Number of proteins in this genome belonging to this COG is 2","***** IPB001308 (Electron transfer flavoprotein alpha-subunit) with a combined E-value of 3.2e-38. IPB001308 265-316","Residues 10-169 are 59% similar to a (ELECTRON TRANSPORT FAD FLAVOPROTEIN) protein domain (PD003495) which is seen in ETFA_CLOTS.Residues 205-330 are 57% similar to a (ELECTRON TRANSPORT FAD FLAVOPROTEIN) protein domain (PD002994) which is seen in ETFA_CLOAB.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Wed Mar 27 10:52:58 2002","Wed Mar 14 15:31:15 MST 2001","Tue Feb 6 09:34:18 MST 2001","Wed Mar 27 10:52:58 2002","Thu Feb 22 13:18:13 MST 2001","Thu Feb 22 13:18:13 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 9-322 are 45% similar to PG0697, a predicted electron transfer flavoprotein alpha subunit.","Mon Apr 2 14:15:49 MDT 2001","Thu Feb 22 13:18:13 MST 2001","-54% similar to PDB:1EFP ELECTRON TRANSFER FLAVOPROTEIN (ETF) FROM PARACOCCUS DENITRIFICANS (E_value = 1.4E_41);-51% similar to PDB:1T9G Structure of the human MCAD:ETF complex (E_value = 9.4E_41);-51% similar to PDB:2A1T Structure of the human MCAD:ETF E165betaA complex (E_value = 9.4E_41);-51% similar to PDB:2A1U Crystal structure of the human ETF E165betaA mutant (E_value = 9.4E_41);-55% similar to PDB:1EFV THREE-DIMENSIONAL STRUCTURE OF HUMAN ELECTRON TRANSFER FLAVOPROTEIN TO 2.1 A RESOLUTION (E_value = 2.1E_40);","","","Residues 8 to 292 (E-value = 4.4e-130) place PG0960 in the ETF_alpha family which is described as Electron transfer flavoprotein alpha subunit (PF00766)","Wed Mar 14 15:31:15 MST 2001","34540814","","","O'Neill,H., Mayhew,S.G. and Butler,G. 1998. Cloning and analysis of the genes for a novel electron-transferring flavoprotein from Megasphaera elsdenii. Expression and characterization of the recombinant protein. J. Biol. Chem. 273 (33): 21015-21024. PubMed: 9694853.Boynton,Z.L., Bennet,G.N. and Rudolph,F.B. 1996. Cloning, sequencing, and expression of clustered genes encoding beta-hydroxybutyryl-coenzyme A (CoA) dehydrogenase, crotonase, and butyryl-CoA dehydrogenase from Clostridium acetobutylicum ATCC 824. JOURNAL J. Bacteriol. 178 (11): 3015-3024. PubMed: 8655474. ","","Wed Mar 27 10:52:58 2002","1","","","PG1078" "PG0961","1146692","1147459","768","ATGGAATTTCACAATCTGATCATCCAATCGAAAGATGGTATCACGACGCTGACCATCAACAAACCGGAGACACTGAACGCCCTCTCCTCTGAAGTCCTTTCCGAATTGAAGTCGGCCATTGCCGTTATCGCTACAGAAAAGCCTCGAGTGCTGATCATTACCGGAAGCGGCAAAGCATTTGTCGCAGGAGCAGACATAGCCGAGATGCAACATCTGAGTGCAGCCGAGGGAAAAGCCTTTGGAGGGCTTGGAGCAGAGGTATTCCGAAGGATAGAAGAATTGCCTTTCCCTGTTATTGCAGCCATCAATGGCTTTGCTTTGGGAGGCGGATGCGAATTGGCCATGGCTTGTGACATCCGCATAGCTTCGGCTAAAGCCAAGTTTGGTCAGCCCGAAGTCGGATTGGGCATCACCCCCGGATTCTCCGGTACACAGCGCTTGCCACGCCTTGTCGCTCCGGGTATAGCCAAAGAACTCATCTACACGGGGCGTATCATCGATGCAGAAGAAGCACTTCGTATTGGTCTTGTCAATCGGGTAACAACTCCGGAGGAATTATTACCTGCCACGATGGAAACGGCTCAACTCATTGCATCACGCTCAGCTTCTGCCGTATCAGCTTCAAAAGAGGCTATCAATCGTGGTACGGAGATGCATATTGCCGAAGGCATTGCTTTGGAACAGAATCTCTTCGGACTGTGCTTTGCCACAGCCGACCAGAAGGAAGGCATGGCAGCTTTCCTCGAAAAACGTAAACCGGCTTTCTGC","5.50","-3.45","26964","MEFHNLIIQSKDGITTLTINKPETLNALSSEVLSELKSAIAVIATEKPRVLIITGSGKAFVAGADIAEMQHLSAAEGKAFGGLGAEVFRRIEELPFPVIAAINGFALGGGCELAMACDIRIASAKAKFGQPEVGLGITPGFSGTQRLPRLVAPGIAKELIYTGRIIDAEEALRIGLVNRVTTPEELLPATMETAQLIASRSASAVSASKEAINRGTEMHIAEGIALEQNLFGLCFATADQKEGMAAFLEKRKPAFC","1146641 1147459 [Shorter 1237 179 99]","TIGR ID: PG1079","3-hydroxybutryl-CoA dehydratase (crotonase)","Cytoplasm","Numerous significant hits to 3-hydroxybutryl-CoA dehydratase protein in gapped BLAST; e.g. residues 1-255 are 56% similar to emb|CAB07495.1| crotonase of Thermoanaerobacterium thermosaccharolyticum, residues 1-252 are 55% similar to gb|AAA95967.1| crotonase of Clostridium acetobutylicum, residues 14-255 are 56% similar to gb|AAB90798.1| enoyl-CoA hydratase of Archaeoglobus fulgidus.","
InterPro
IPR001753
Domain
Enoyl-CoA hydratase/isomerase
PF00378\"[15-182]TECH
PS00166\"[99-119]TENOYL_COA_HYDRATASE
InterPro
IPR001854
Family
Ribosomal protein L29
PS00579\"[29-43]?RIBOSOMAL_L29
noIPR
unintegrated
unintegrated
G3DSA:3.90.226.10\"[3-256]TG3DSA:3.90.226.10
PTHR11941\"[8-255]TPTHR11941
SSF52096\"[2-255]TSSF52096


","BeTs to 7 clades of COG1024COG name: Enoyl-CoA hydratase/carnithine racemaseFunctional Class: IThe phylogenetic pattern of COG1024 is A---Yq--EBR---------xNumber of proteins in this genome belonging to this COG is 1","***** IPB001753 (Enoyl-CoA hydratase/isomerase) with a combined E-value of 2e-51. IPB001753A 17-28 IPB001753B 49-71 IPB001753C 96-122 IPB001753D 143-182","Residues 176-255 are 41% similar to a (HYDRATASE PROTEIN ENOYL-COA LYASE ACID FATTY METABOLISM) protein domain (PD001362) which is seen in O53418_MYCTU.Residues 87-176 are 36% similar to a (NONACTATE SYNTHASE) protein domain (PD170597) which is seen in O85738_BBBBB.Residues 89-175 are 74% similar to a (PROTEIN HYDRATASE ENOYL-COA ACID) protein domain (PD000432) which is seen in CRT_CLOAB.Residues 1-69 are 53% similar to a (PROTEIN HYDRATASE ENOYL-COA ACID FATTY METABOLISM LYASE) protein domain (PD000523) which is seen in P97087_BBBBB.","","Wed Jun 13 15:53:07 MDT 2001","","Wed Jun 13 15:53:07 MDT 2001","Wed Jun 13 15:53:07 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Jun 13 15:53:07 MDT 2001","Wed Jun 13 15:53:07 MDT 2001","","","Thu Feb 22 13:22:00 MST 2001","Mon Jun 18 14:58:43 MDT 2001","Tue Feb 6 10:16:58 MST 2001","Mon Jun 18 14:55:10 MDT 2001","Mon Jun 18 14:55:10 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 2-255 are 33% similar to PG1332, a predicted dihydroxynaphthoate synthase.","Wed Jun 13 15:56:47 MDT 2001","Thu Feb 22 13:22:00 MST 2001","-58% similar to PDB:1DUB 2-ENOYL-COA HYDRATASE, DATA COLLECTED AT 100 K, PH 6.5 (E_value = 3.9E_46);-58% similar to PDB:1EY3 STRUCTURE OF ENOYL-COA HYDRATASE COMPLEXED WITH THE SUBSTRATE DAC-COA (E_value = 3.9E_46);-58% similar to PDB:1MJ3 Crystal Structure Analysis of rat enoyl-CoA hydratase in complex with hexadienoyl-CoA (E_value = 3.9E_46);-58% similar to PDB:2DUB ENOYL-COA HYDRATASE COMPLEXED WITH OCTANOYL-COA (E_value = 3.9E_46);-58% similar to PDB:2HW5 The crystal structure of human enoyl-coenzyme A (CoA) hydratase short chain 1, ECHS1 (E_value = 8.7E_46);","","","Residues 15 to 182 (E-value = 3.2e-65) place PG0961 in the ECH family which is described as Enoyl-CoA hydratase/isomerase family (PF00378)","Mon Jun 18 14:55:10 MDT 2001","34540815","","","Boynton,Z.L., Bennet,G.N. and Rudolph,F.B. 1996. Cloning, sequencing, and expression of clustered genes encoding beta-hydroxybutyryl-coenzyme A (CoA) dehydrogenase, crotonase, andbutyryl-CoA dehydrogenase from Clostridium acetobutylicum ATCC 824. J. Bacteriol. 178 (11): 3015-3024. PubMed: 8655474. ","","Tue Feb 6 10:28:43 MST 2001","1","","","PG1079" "PG0962","1147509","1148351","843","ATGAAAATAGCAGTAGTAGGTACCGGAGCCATGGGCAGCGGTATCGTTCAATGTATCGCCCAAAACGGCCTGGACGTCTTGATGAAAGGGCGAAGCGAGACTTCTATCAACAAATCGCTCAAAGGAATCGAAAAAAATCTCAGCCGTCTGGTTGAAAAGGGCAAGATGTCTGCCGATGAGCAGCAAGCCGTTATGGCTCGTATCCGTACGACGATGGACTTCAATGACCTGAAAGATGCCGGTATCGTGATTGAAGCGATTGCCGAAGAAATGGAAATAAAGAAACAGGCCCTCAGTGCTGTGGCGGAAGTGGTAAGCGAGCAATGTATCATCGCTACCAATACATCTTCATTGAGTATCACAGCTTTGGCAACCGAACTCCCTACCCCATCTCGTGTGATCGGAATGCACTTCTTCAATCCCGTTCCCGTGATGAAACTGGTAGAAGTTATCAGTGCCCAGCAAACTTCGGACGAAGTGATGAAGCAGGTACTGGACTTGTGCGAAATGCTCAAGAAAACAGCCGTACGCGTGAACGAAGCTCCGGGTTTCGTCGTAAACCGTCTTCTCATACCGATGATCAACGAAGGTATCGGAGCCTATGCCGACGGTGTGGCCAGCATAGAGGAAATAGATCAGGCCATGATGCTCGGTGCCAATCACCCGATGGGCCCTTTGGCTTTGGGCGATTTTATCGGTTTGGATGTCTGTCTGGCTATCATGGAGGTATTATTCACCGAATTTGGTGATGCCAAATATCGTCCTCATCCTTTGCTTCGCAAGATGGTTCGTGCAGGACAGCTTGGCCGCAAGACCGGCAAAGGCTTCTACGACTATAGCAAA","5.90","-2.45","30379","MKIAVVGTGAMGSGIVQCIAQNGLDVLMKGRSETSINKSLKGIEKNLSRLVEKGKMSADEQQAVMARIRTTMDFNDLKDAGIVIEAIAEEMEIKKQALSAVAEVVSEQCIIATNTSSLSITALATELPTPSRVIGMHFFNPVPVMKLVEVISAQQTSDEVMKQVLDLCEMLKKTAVRVNEAPGFVVNRLLIPMINEGIGAYADGVASIEEIDQAMMLGANHPMGPLALGDFIGLDVCLAIMEVLFTEFGDAKYRPHPLLRKMVRAGQLGRKTGKGFYDYSK","1147281 1148351 [Bad Olap 1236 179 0]","TIGR ID: PG1080","3-hydroxybutyryl-CoA dehydrogenase (beta-hydroxybutyryl-CoA dehydrogenase) (BHBD)","Cytoplasm","Numerous significant hits to 3-hydroxybutyryl-CoA dehydrogenase (beta-hydroxybutyryl-CoA dehydrogenase) protein in gapped BLAST; e.g. residues 1-281 are 59% similar to pir||I40679 beta-hydroxybutyryl-CoA dehydrogenase, NAD-dependent of Clostridium difficile, residues 2-281 are 54% similar to gb|AAA23208.1| NAD-dependent beta-hydroxybutyryl coenzyme A dehydrogenase of Clostridium acetobutylicum, residues 2-279 are 52% similar to emb|CAB07499.1| 3-hydroxybutyryl coenzyme A dehydrogenase of Thermoanaerobacterium thermosaccharolyticum. ","
InterPro
IPR006108
Domain
3-hydroxyacyl-CoA dehydrogenase, C-terminal
PF00725\"[183-279]T3HCDH
InterPro
IPR006176
Domain
3-hydroxyacyl-CoA dehydrogenase, NAD-binding
PF02737\"[2-181]T3HCDH_N
InterPro
IPR006180
Family
3-hydroxyacyl-CoA dehydrogenase
PS00067\"[180-205]?3HCDH
InterPro
IPR008927
Domain
6-phosphogluconate dehydrogenase, C-terminal-like
SSF48179\"[182-281]T6DGDH_C_like
InterPro
IPR013328
Domain
Dehydrogenase, multihelical
G3DSA:1.10.1040.10\"[190-279]TOpine_DH
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.720\"[2-186]TG3DSA:3.40.50.720
PTHR23309\"[44-281]TPTHR23309
SSF51735\"[2-182]TSSF51735


","BeTs to 5 clades of COG1250COG name: 3-Hydroxyacyl-CoA dehydrogenaseFunctional Class: IThe phylogenetic pattern of COG1250 is A-------EBR---------xNumber of proteins in this genome belonging to this COG is 1","***** IPB002135 (3-hydroxyacyl-CoA dehydrogenase) with a combined E-value of 4.8e-83. IPB002135A 3-30 IPB002135B 81-121 IPB002135C 122-151 IPB002135D 172-204 IPB002135E 220-236 IPB002135F 269-279","Residues 188-261 are 44% similar to a (PROTEIN DEHYDROGENASE FATTY) protein domain (PD003524) which is seen in HBDH_ECOLI.Residues 3-79 are 53% similar to a (DEHYDROGENASE 3-HYDROXYACYL-COA PROTEIN FATTY ACID) protein domain (PD001487) which is seen in O29077_ARCFU.Residues 103-281 are 69% similar to a (DEHYDROGENASE PROTEIN 3-HYDROXYACYL-COA FATTY ACID) protein domain (PD001126) which is seen in HBD_CLODI.","","Wed Jun 13 15:48:53 MDT 2001","","Wed Jun 13 15:48:53 MDT 2001","Wed Jun 13 15:48:53 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Jun 13 15:48:53 MDT 2001","Wed Jun 13 15:48:53 MDT 2001","","","Wed Mar 14 15:36:15 MST 2001","Mon Jun 18 15:05:41 MDT 2001","Tue Feb 6 10:51:44 MST 2001","Mon Jun 18 15:01:59 MDT 2001","Mon Jun 18 15:01:59 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 22 13:30:17 MST 2001","-54% similar to PDB:1F0Y L-3-HYDROXYACYL-COA DEHYDROGENASE COMPLEXED WITH ACETOACETYL-COA AND NAD+ (E_value = 1.1E_44);-55% similar to PDB:1F12 L-3-HYDROXYACYL-COA DEHYDROGENASE COMPLEXED WITH 3-HYDROXYBUTYRYL-COA (E_value = 1.1E_44);-55% similar to PDB:1F14 L-3-HYDROXYACYL-COA DEHYDROGENASE (APO) (E_value = 1.1E_44);-55% similar to PDB:1F17 L-3-HYDROXYACYL-COA DEHYDROGENASE COMPLEXED WITH NADH (E_value = 1.1E_44);-54% similar to PDB:1LSJ Crystal Structure of the E110Q Mutant of L-3-Hydroxyacyl-CoA Dehydrogenase in Complex with NAD (E_value = 1.1E_44);","","","Residues 1 to 181 (E-value = 9.9e-67) place PG0962 in the 3HCDH_N family which is described as 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain (PF02737)Residues 183 to 279 (E-value = 2.8e-54) place PG0962 in the 3HCDH family which is described as 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain (PF00725)","Mon Jun 18 15:01:59 MDT 2001","34540816","","","Mullany,P., Clayton,C.L., Pallen,M.J., Slone,R., al-Saleh,A. andTabaqchali,S. 1994. Genes encoding homologues of three consecutive enzymes in the butyrate/butanol-producing pathway of Clostridium acetobutylicum are clustered on the Clostridium difficile chromosome. FEMS Microbiol. Lett. 124 (1): 61-67. PubMed: 8001771.","","Tue Feb 6 10:51:44 MST 2001","1","","","PG1080" "PG0963","1149720","1148527","1194","ATGAAAGTATTGGTATTGAACTGTGGTAGTTCATCCGTCAAATATAAGCTACTCGAAATGCCCAAAGGAGACGTATTGGCTCAGGGCGGAGTGGAAAAATTAGGCCTTCCCGGCTCATTTCTCAAACTAACCATGCCCAATGGTGAGAAAGTGGTGCTGGAGAAAGATATGCCCGAACATACGATAGCCGTAGAGTTCATTCTTTCCGTGCTCAAAGATGACAAATACGGATGCATCAAGAGCTATGAAGAAATCGATGCAGTAGGGCACCGTCTCGTTCATGGAGGTGAGAAGTTCAGTAATAGCGTGGAGATCACACCGGAAGTAATTGCCAAAGTAGAAGAATGTATTCCTTTGGCTCCACTTCACAATCCGGCTAACCTCAAAGGCGTCGTAGCCATCGAGAAGTTGCTCCCCGGTATTCGTCAGGTGGGTGTATTCGATACAGCTTTCTTCCAAACCATGCCGGAACATGTGTACCGATATGCCTTGCCATATGATATGTGCAACAAGCATGGTGTACGTCGCTATGGATTCCACGGCACCAGCCATCGCTATGTCAGTGCCCGTGCTTGTGAGATCTTGGGTTTGGACTACGACAAAACTCGCATAATCACGGCACATATCGGCAATGGAGCTTCCATCGCTGCAATCAAAAACGGCAAGGCTTTGGACGTATCATTGGGGATGACACCCGTAGAAGGGCTTATGATGGGTACGCGCAGTGGAGACGTAGACCCCGGTGTTCTTACCTTCCTGATGGAAGCAGAAGGCCTCGAAGCAGCAGGAATCTCTGAACTGATCAATAAAAAGAGCGGTGTACTTGGCGTAAGCGGTGTGTCCTCCGACATGCGCGAAATCGAAGATGCCATCAAGAATGGCAACGAAAGAGCTACTCTGGCCATGACCATGTACGACTACAGGATCAAAAAATATGTAGGAGCTTATGCCGCTGCCATGGGAGGAGTCGATGTGCTCGTATTCACCGGTGGAGTGGGTGAAAACCAATATACCACGAGAGAGAAAGTATGTACCGATATGGAATTTATGGGTATTGTCTTTGATTCAAAGGTGAATGAAGGTATGCGCGGAAAAGAAATGGTAATCAGCAAGCCGGAAAGCAAAGTAACCGTGATCGTCGTTCCCACTGACGAAGAATATATGATTGCCTCCGACACCATGACAATCCTCAAA","5.90","-6.08","43280","MKVLVLNCGSSSVKYKLLEMPKGDVLAQGGVEKLGLPGSFLKLTMPNGEKVVLEKDMPEHTIAVEFILSVLKDDKYGCIKSYEEIDAVGHRLVHGGEKFSNSVEITPEVIAKVEECIPLAPLHNPANLKGVVAIEKLLPGIRQVGVFDTAFFQTMPEHVYRYALPYDMCNKHGVRRYGFHGTSHRYVSARACEILGLDYDKTRIITAHIGNGASIAAIKNGKALDVSLGMTPVEGLMMGTRSGDVDPGVLTFLMEAEGLEAAGISELINKKSGVLGVSGVSSDMREIEDAIKNGNERATLAMTMYDYRIKKYVGAYAAAMGGVDVLVFTGGVGENQYTTREKVCTDMEFMGIVFDSKVNEGMRGKEMVISKPESKVTVIVVPTDEEYMIASDTMTILK","1149720 1148527","TIGR ID: PG1081","acetate kinase (acetokinase)","Cytoplasm","Numerous significant hits to acetate kinase protein in gapped BLAST; e.g. residues 1-398 are 52% similar to gb|AAD35363.1|AE001709_9 acetate kinase of Thermotoga maritima, residues 1-398 are 49% similar to emb|CAA06175.1| acetate kinase of Thermoanaerobacterium thermosaccharolyticum, residues 1-398 are 47% similar to gb|AAB96952.1| acetate kinase of Clostridium thermocellum.This sequence is similar to BT3693.","
InterPro
IPR000890
Family
Acetate and butyrate kinase
PR00471\"[3-14]T\"[174-187]T\"[204-225]T\"[301-314]T\"[323-339]T\"[378-390]TACETATEKNASE
PTHR21060\"[1-398]TAcetate_kin
PF00871\"[2-391]TAcetate_kinase
PS01075\"[3-14]TACETATE_KINASE_1
PS01076\"[204-221]TACETATE_KINASE_2
InterPro
IPR004372
Family
Acetate kinase
PIRSF000722\"[1-398]TAcetate_prop_kin
PTHR21060:SF11\"[1-398]TAckA
TIGR00016\"[1-398]TackA
noIPR
unintegrated
unintegrated
G3DSA:3.30.420.40\"[1-184]TG3DSA:3.30.420.40
SSF53067\"[1-156]T\"[157-398]TSSF53067


","BeTs to 10 clades of COG0282COG name: Acetate kinaseFunctional Class: CThe phylogenetic pattern of COG0282 is ------VcEBrhujgpol--xNumber of proteins in this genome belonging to this COG is 1","***** IPB000890 (Acetate and butyrate kinase) with a combined E-value of 2.2e-112. IPB000890A 3-16 IPB000890B 87-97 IPB000890C 99-152 IPB000890D 174-187 IPB000890E 207-247 IPB000890F 268-279 IPB000890G 324-335 IPB000890H 369-392","Residues 2-379 are 48% similar to a (KINASE TRANSFERASE ACETATE ACETOKINASE) protein domain (PD003226) which is seen in ACKA_CLOTS.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Thu Feb 22 13:39:52 MST 2001","Fri Dec 26 13:29:35 2003","Tue Feb 6 11:09:36 MST 2001","Thu Feb 22 13:39:52 MST 2001","Thu Feb 22 13:39:52 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 22 13:39:52 MST 2001","-66% similar to PDB:1G99 AN ANCIENT ENZYME: ACETATE KINASE FROM METHANOSARCINA THERMOPHILA (E_value = 2.4E_102);-66% similar to PDB:1TUU Acetate Kinase crystallized with ATPgS (E_value = 2.4E_102);-66% similar to PDB:1TUY Acetate Kinase complexed with ADP, AlF3 and acetate (E_value = 2.4E_102);-59% similar to PDB:1X3M Crystal structure of ADP bound Propionate kinase (TdcD) from Salmonella typhimurium (E_value = 2.0E_80);-59% similar to PDB:1X3N Crystal structure of AMPPNP bound Propionate kinase (TdcD) from Salmonella typhimurium (E_value = 2.0E_80);","","","Residues 2 to 391 (E-value = 1e-199) place PG0963 in the Acetate_kinase family which is described as Acetokinase family (PF00871)","Thu Feb 22 13:39:52 MST 2001","34540817","","","Boynton,Z.L., Bennett,G.N. and Rudolph,F.B. 1996. Cloning, sequencing, and expression of genes encoding phosphotransacetylase and acetate kinase from Clostridium acetobutylicum ATCC 824. Appl. Environ. Microbiol. 62 (8): 2758-2766. PubMed: 8702268.Glasemacher,J., Schmidt,R. and Schonheit,P. 1999. Purification and characterization of two extremely thermostable enzymes, phosphate acetyltransferase and acetate kinase, from the hyperthermophilic eubacterium Thermotoga maritima. J. Bacteriol. 181 (6): 1861-1867. PubMed: 10074080.","","Thu Feb 22 13:39:52 MST 2001","1","","","PG1081" "PG0964","1150776","1149769","1008","ATGGATCTCATTCAAGACGTTATCAGACGTGCTCAAGAGAACAAACAACGGATCGTTCTGCCCGAAGGGCTGGAACCTCGTACATTGGAAGCTGCCGACCGTCTCATGGCCGACAAAGTTGTAAACATCATTCTGATCGGTAATGTCGATAGTGTGAAAGCCAAAGTGGCGGAACTCGGTTTGAAGAACTTGGCCGAGGCTGTGATCATTGATCCGAATAACCATCCCAAGAAGCAACAATACACTGACCTTCTGCTGCAAATTCGCCAAAAAAAGGGGCTGACACCCGAAAAGGCGGCCGAACTCGTAGAAAACCCCCTCTATCTGGGTTGTCTCATTGTAAAGAGTGGAGATGCCGATGGACTGATTGCCGGCGCACAGAATACTACCGGCGATGTACTTCGTCCGGCTCTTCAAGTCATCAAGACAGCTCCGGGCATGACTAGCGTGAGCGGTACTTTCTTACTCTTCACCAAAGCCAAAGAATATGGCAAAGACGGACTTTTGCTTGTTGCAGACTGTGCTGTTATACCCAATCCGACAGCAGATGAGTTGGCACAGATCGCTGTCGCTACGGCTCGTACGGCGAAAGCCATTGCCGATATTGAACCGCGTGTAGCTATGTTGAGCTTCTCTACGAAAGGCAGTGCAAAACATGAAATGACAGATAAGGTCGTAGAAGCTACTCGTATGGCTCAAGAAATGGCTCCTGATTTGTTGATCGATGGCGAAATGCAAGCCGATGCAGCTTTGGTAGAAAGAGTGGCAGCACTCAAAGCTCCGGGAAGCAATGTAGCAGGAAAGGCCAATGTACTTGTATTCCCGACGCTTGAAGTCGGCAACATCGCATACAAACTTGTAGAGCGTCTGGGCCATGCAGAAGCCGTAGGACCTATTCTGCAAGGAATGGCTGCACCTGTAAACGATTTGAGCCGCGGATGCTCGGTCGAAGATATATACAGGATGGTTGCCATCACGGCCAACCAAGCTATCGCAGCCAAGGAGCAA","5.40","-4.40","35771","MDLIQDVIRRAQENKQRIVLPEGLEPRTLEAADRLMADKVVNIILIGNVDSVKAKVAELGLKNLAEAVIIDPNNHPKKQQYTDLLLQIRQKKGLTPEKAAELVENPLYLGCLIVKSGDADGLIAGAQNTTGDVLRPALQVIKTAPGMTSVSGTFLLFTKAKEYGKDGLLLVADCAVIPNPTADELAQIAVATARTAKAIADIEPRVAMLSFSTKGSAKHEMTDKVVEATRMAQEMAPDLLIDGEMQADAALVERVAALKAPGSNVAGKANVLVFPTLEVGNIAYKLVERLGHAEAVGPILQGMAAPVNDLSRGCSVEDIYRMVAITANQAIAAKEQ","1150965 1149769","TIGR ID: PG1082","phosphotransacetylase","Cytoplasm","Numerous significant hits to phosphotransacetylase (phosphate acetyltransferase) protein in gapped BLAST; e.g. residues 1-330 are 52% similar to emb|CAA06174.1| phosphotransacetylase of Thermoanaerobacterium thermosaccharolyticum, residues 1-330 are 52% similar to gb|AAB18300.1| phosphotransacetylase of Clostridium acetobutylicum, residues 1-330 are 48% similar to gb|AAB96951.1| phosphotransacetylase of Clostridium thermocellum, residues 10-331 are 37% similar to gb|AAC71521.1| phosphotransacetylase of Mycoplasma genitalium.This sequence is similar to BT3692.","
InterPro
IPR002505
Domain
Phosphate acetyl/butaryl transferase
PF01515\"[2-327]TPTA_PTB
InterPro
IPR004614
Domain
Phosphate acetyltransferase
TIGR00651\"[18-327]Tpta
InterPro
IPR012147
Family
Phosphate acetyl/butyryltransferase
PIRSF000428\"[1-333]TP_Ac_trans
noIPR
unintegrated
unintegrated
PTHR23406\"[70-333]TPTHR23406
PTHR23406:SF3\"[70-333]TPTHR23406:SF3
SSF53659\"[1-330]TSSF53659


","BeTs to 10 clades of COG0280COG name: PhosphotransacetylaseFunctional Class: CThe phylogenetic pattern of COG0280 is ------VcEBrH-jgpol--XNumber of proteins in this genome belonging to this COG is 1","***** PF01515 (Phosphate acetyl/butaryl transferase) with a combined E-value of 2e-71. PF01515A 171-189 PF01515B 241-282 PF01515C 284-327","Residues 4-327 are 50% similar to a (TRANSFERASE PHOSPHATE PHOSPHOTRANSACETYLASE) protein domain (PD002789) which is seen in O65980_BBBBB.","","Wed Jun 13 15:41:36 MDT 2001","","Wed Jun 13 15:41:36 MDT 2001","Wed Jun 13 15:41:36 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Jun 13 15:41:36 MDT 2001","Wed Jun 13 15:41:36 MDT 2001","","","Tue Feb 6 12:10:20 MST 2001","Fri Dec 26 13:27:59 2003","Tue Feb 6 11:47:55 MST 2001","Mon Jun 18 15:07:16 MDT 2001","Mon Jun 18 15:07:16 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 3-325 show 26% similarity to PG0251, a predicted NADP-dependent malic enzyme (malate oxidoreductase and phosphotransacetylase).","Wed Jun 13 15:47:27 MDT 2001","Mon Feb 12 18:07:30 MST 2001","-66% similar to PDB:1QZT Phosphotransacetylase from Methanosarcina thermophila (E_value = 1.1E_78);-66% similar to PDB:2AF3 Phosphotransacetylase from Methanosarcina thermophila soaked with Coenzyme A (E_value = 1.1E_78);-66% similar to PDB:2AF4 Phosphotransacetylase from Methanosarcina thermophila co-crystallized with coenzyme A (E_value = 1.1E_78);-62% similar to PDB:1TD9 Crystal Structure of a Phosphotransacetylase from Bacillus subtilis (E_value = 2.7E_72);-62% similar to PDB:1XCO Crystal Structure of a Phosphotransacetylase from Bacillus subtilis in complex with acetylphosphate (E_value = 2.7E_72);","","","Residues 2 to 327 (E-value = 1.6e-164) place PG0964 in the PTA_PTB family which is described as Phosphate acetyl/butaryl transferase (PF01515)","Mon Jun 18 15:07:16 MDT 2001","34540818","","","Boynton,Z.L., Bennett,G.N. and Rudolph,F.B. 1996. Cloning, sequencing, and expression of genes encoding phosphotransacetylase and acetate kinase from Clostridium acetobutylicum ATCC 824. Appl. Environ. Microbiol. 62 (8): 2758-2766. PubMed: 8702268.","","Tue Feb 6 12:10:20 MST 2001","1","","","PG1082" "PG0965","1151927","1150989","939","TTGAGGAGGAGGTCTGGCACAGGCTTCCTCCTTTTATTTCTACTAACCGCTTATTGCCTATATTTGAATCATTGGAAGAAAAGAAAAGGAGAAATGAAAGCAAAACAAAATATAAGCAAGAAACGAAATCCATTCAACTGCATAGTCATCATCCTCACGACTCTATACATCATAAGCATCACCTCTATATCATTGCAAGCTCAGCAACCCATCTCCAACGATTTCAGCAGGACCGGAGAATGCCTCAGCTATACAATCTACTATAAGTGGGGGGCACTGATGCCACGTGCCGGCGATGCTTCACTATCGTTTGAAAAACAGGATAGAGGATTCAGATCTCGTTTGCTTTTCAGAACAGCACCTTTCTTCGATGCCATCTTTAGTATGAGGGACACCCTTGACTGCAATCTCGATCACAAGATGCGTATCGTGGATGGGCAAAAGCATGTGATGGAAGGGGGAGATTACACAATGGATCTAATTCATTTTTCACGACAGGATGATCGCAATCGAATACATACGAAGCGGTTTCGCAATGGAGAATCAAGGATCGATACGGTAGAAATTACCAACCAAATATCTCTGGATATGATAGGAGCCATACTCTATCTTCGCTCGACAGACTGGTCAAAGAGTACAAAAGAGCGCATACCGGTAAGAATATTTGCAGGGAAAAAGGGGATCGACTGTTTCTTTCAATACGAAAGTTCTGAAGTACAAAAAACGAAAAAGGGTATCAACTATCATACTCATCGGGTATCCATGCTCATAAACGAATCCGAAACATTCAAGAATCCCAAAAAGGCTATTACCATATGGCTCACGAATGATGCCAATAGAATACCTGTCCGTATCAGGATGGAGCTGAGAATCGGTGCAGCCGAAGTCTATCTGAAGTCGGTAGAGGGGTTGCGTCATCCTCTTTCGTCACGTACTAGA","10.80","23.69","36453","LRRRSGTGFLLLFLLTAYCLYLNHWKKRKGEMKAKQNISKKRNPFNCIVIILTTLYIISITSISLQAQQPISNDFSRTGECLSYTIYYKWGALMPRAGDASLSFEKQDRGFRSRLLFRTAPFFDAIFSMRDTLDCNLDHKMRIVDGQKHVMEGGDYTMDLIHFSRQDDRNRIHTKRFRNGESRIDTVEITNQISLDMIGAILYLRSTDWSKSTKERIPVRIFAGKKGIDCFFQYESSEVQKTKKGINYHTHRVSMLINESETFKNPKKAITIWLTNDANRIPVRIRMELRIGAAEVYLKSVEGLRHPLSSRTR","1151927 1150989","TIGR ID: PG1083","conserved hypothetical protein","Cytoplasm","No significant hits in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-19]?signal-peptide
tmhmm\"[4-22]?\"[43-63]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Sep 10 16:42:52 2004","Tue Feb 6 14:16:57 MST 2001","Tue Feb 6 14:16:57 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Sep 10 16:42:52 2004","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540819","","","","","","1","","","PG1083" "PG0966","1153051","1151978","1074","GTGCTGCTTGCAGGTCTTACCTCCTGTCAACAAAAAGGTTATACCATCACCGGTACCGTGGACAGTACGCTGAACCTCGACGGCAATATGGTTTACATCCAGCTATCTCAAGGCAACAATTTAGATAGCACGACGATCCGGAACGGAGCATTCACATTCACCGGAGAACATATCGATACGGCCAAGTTGGCTTATATCGTGACAGCTTCGCCCGAACATAATGTAGTACCGATCATCTTCATTTTGGAAGACGGCAAAATTTCTGCAAAAATCGGAGAGTATGCGGCAAAGGGCACTCCGTTGAACGAAGAAAACTTCAAGTATTCTGCCAAGATCAATGAATTGGAAAACAGCTTCAAACTCAAAATGGAAGAGATCCAGGCTGATACGGCCCGTGCTGCAGAGGAAACACAAGCCATGCTGGAAAAAGAGTATACGGCAATGTTGGGAGAGAAGAGCAAAATAACAACCGAACTATACCAATCGCACACAAACGATGCTCTCGGTGCACGTCTCTTACAGAATATTCTCTACGGAGAAGGCTCTGATTCGGATGTTATTGCAGAAGCACGCAAAAAGGCCGGCCCTATTGTTTTGGCACATCCGAATATTGTTCATTTGCTCGCTATGATTGACAATTTGGCTGATACGCAACCCGGCAAAATGGCTAAAAACTTTGCTGGAACGGATGCCGAGGGCAATGAGGTAGAACTCTTCAAATATGTTGGACAAGGCAACTATGCTGTGGTTGACTTCTGGGCTTCATGGTGCGGCCCTTGCCGTCGTGAAATTCCTTACATAGCTGAAGCTAATGCCAAGTTTGCAGAAAAAGGTCTGCAAGTAGTCGGCATAGTAGTTTGGGATAAAATGGAAGATCACCTGAAAGCAAAAGAAGCTCTCAACGTGGTATGGCCTCAGATATTCGATGCTAAGAATGTGGCTACGGATATGTATGGCATACAAGGTATTCCGCAAGTCATACTGTTCGGTCCTGACGGCACTATTATAGAGCGAGATCTTCGTGGTGAAAAGCTAATCGAAAAACTCAGCGAAATCTATAATTCGAATAAAAAA","4.80","-12.67","39373","VLLAGLTSCQQKGYTITGTVDSTLNLDGNMVYIQLSQGNNLDSTTIRNGAFTFTGEHIDTAKLAYIVTASPEHNVVPIIFILEDGKISAKIGEYAAKGTPLNEENFKYSAKINELENSFKLKMEEIQADTARAAEETQAMLEKEYTAMLGEKSKITTELYQSHTNDALGARLLQNILYGEGSDSDVIAEARKKAGPIVLAHPNIVHLLAMIDNLADTQPGKMAKNFAGTDAEGNEVELFKYVGQGNYAVVDFWASWCGPCRREIPYIAEANAKFAEKGLQVVGIVVWDKMEDHLKAKEALNVVWPQIFDAKNVATDMYGIQGIPQVILFGPDGTIIERDLRGEKLIEKLSEIYNSNKK","1153123 1151978","TIGR ID: PG1084","conserved hypothetical protein (probable cytochrome c biogenesis protein, thiol:disulfide interchange protein)","Cytoplasm, Inner membrane","Numerous weak hits to cytochrome c biogenesis protein, thiol:disulfide interchange protein in gapped BLAST; e.g. residues 223-337 are 27% similar to emb|CAB14247.1| essential protein similar to cytochrome c biogenesis protein of Bacillus subtilis, residues 220-352 are 26% similar to dbj|BAB05296.1| cytochrome c biogenesis (thioredoxin) of Bacillus halodurans, residues 220-336 are 28% similar to gb|AAF09925.1|AE001894_9 cytochrome c biogenesis protein, thiol:disulfide interchange protein of Deinococcus radiodurans.","
InterPro
IPR000866
Domain
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
PF00578\"[219-338]TAhpC-TSA
InterPro
IPR006662
Domain
Thioredoxin-related
PR00421\"[248-256]T\"[256-265]T\"[319-330]TTHIOREDOXIN
PS00194\"[249-267]TTHIOREDOXIN
InterPro
IPR011594
Domain
Thioredoxin-like
PD003679\"[264-350]TQ7MUA0_PORGI_Q7MUA0;
InterPro
IPR012335
Domain
Thioredoxin fold
G3DSA:3.40.30.10\"[197-338]Tno description
InterPro
IPR015467
Domain
Thioredoxin family
PTHR10438\"[249-274]TTHIOREDOXIN-RELATED
noIPR
unintegrated
unintegrated
PTHR10438:SF16\"[249-274]TTHIOREDOXIN H-TYPE-RELATED


","BeTs to 13 clades of COG0526COG name: Thiol-disulfide isomerase and thioredoxinsFunctional Class: O,CThe phylogenetic pattern of COG0526 is AMTkYQVCEBRHUJgpoLINXNumber of proteins in this genome belonging to this COG is 7","***** IPB000063 (Thioredoxin family) with a combined E-value of 7.4e-10. IPB000063 249-261","Residues 223-286 are 35% similar to a (PROTEIN PEROXIDASE ANTIOXIDANT REDUCTASE) protein domain (PD000498) which is seen in RESA_BACSU.","","Wed Jun 13 15:04:16 MDT 2001","","Wed Jun 13 15:04:16 MDT 2001","Wed Jun 13 15:04:16 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Jun 13 15:04:16 MDT 2001","Wed Jun 13 15:04:16 MDT 2001","","Wed Jun 13 15:06:08 MDT 2001","Thu Feb 22 14:00:56 MST 2001","Tue Jun 19 08:11:48 MDT 2001","Tue Feb 6 12:54:54 MST 2001","Tue Jun 19 08:06:19 MDT 2001","Tue Jun 19 08:06:19 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 8-350 are 33% similar to PG1431, a predicted cytochrome c biogenesis protein CycX homolog. Weaker similarities are seen to PG0030, a predicted thioredoxin protein. ","Wed Jun 13 15:11:15 MDT 2001","Thu Feb 22 14:00:56 MST 2001","-49% similar to PDB:1ST9 Crystal Structure of a Soluble Domain of ResA in the Oxidised Form (E_value = 2.4E_13);-49% similar to PDB:1SU9 Reduced structure of the soluble domain of ResA (E_value = 2.4E_13);-49% similar to PDB:2F9S 2nd Crystal Structure Of A Soluble Domain Of ResA In The Oxidised Form (E_value = 2.4E_13);-49% similar to PDB:2H1D ResA pH 9.25 (E_value = 2.4E_13);-49% similar to PDB:2H1B ResA E80Q (E_value = 5.3E_13);","","","No significant hits to the Pfam 11.0 database","Tue Jun 19 08:06:19 MDT 2001","34540820","","","","","","1","","","PG1084" "PG0967","1153346","1153591","246","ATGGAAAAGAAGCGTGGAAAAAGGGCTGAAACGCCTGAACAGAAGAAGCAAAAAGCTTCAATGGGTTTTTACTTTAAGAGTGCAAAACCGGCCGAAAAAATGGCTCAGCTCGATGCAGCGATCGCTCGCTATGAAACTTACTTGGCCAACTGTCGCATAGCTAAAGACAATATCGCTGTAACATCTGTAGCAGATCAGATCAAAATGCTGACCAAAGAGCAAAAAGAAGAGTTGAAAAAATTCCTC","10.50","7.94","9398","MEKKRGKRAETPEQKKQKASMGFYFKSAKPAEKMAQLDAAIARYETYLANCRIAKDNIAVTSVADQIKMLTKEQKEELKKFL","1153346 1153591","TIGR ID: PG1085","hypothetical protein","Periplasm, Cytoplasm","This sequence corresponds to gi:34397135 in Genbank.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Feb 6 14:28:25 MST 2001","Fri Mar 4 14:29:23 2005","Tue Feb 6 14:28:25 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Mar 4 14:29:23 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540821","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Fri Mar 4 14:29:23 2005","","1","","","PG1085" "PG0968","1153948","1154880","933","ATGATGATAGCCACAAACCAAGGATACAGAGAGTTCGGCGACTACCTCCGGCAGGTATTTCCACACTATAAAGTACAGAAGATTACCCTCAATGCAGGCTTCACCTGTCCCAACCGAGACGGACTGAAAGGATGGGGCGGCTGTACCTATTGTAACAATCAGACCTTCAGTCCTGCCTTCGCCATGAAAGACCGCTCCGTGTCGGAACAGCTAAGAGACGGGATAGCGTTCTTCGCCCGAAAGTACCCGCACATGAAATACCTGGCCTATTTCCAAGCCTATACCAATACCTATGGAGAGCAAGCCGAGATCATCCGTAAATACGAAGAGGCTCTGAACTACTACGATGTAGTAGGCATTATTATAGGTACCAGACCGGACTGCATGCCGGATTCTCTTTTGTCCTACTTAAAGGATTTGTCGGAAAGAGTATTCGTTCTCGTGGAATATGGTGTAGAGAGTACACTGGATGCCACTCTTCGGCGAGTGAATCGTGGGCACCTCTGGTCGGATAGTATGGCAGCTATCGAGCGAACGGCTAAGACCGGATTGCCGATAGGTGTGCATCTGATCCTCGGGCTGCCGGGGGAAAGCAGAGAAGATATACTCAGGCACGCGGACAAGATATCGGCATTGCCCGTCACTACACTGAAATTGCATCAACTGCAAATTATCCGCGGTACGGCTATGGCCAAAGAATATGCAGAGAGTCCCTCGGACTTTCATTTTTACTCCGAGGAGGAATATATCGATCTGTGTCTTGATTTCATCGAACGCCTGCGTCCTGATATTGTGCTTGAGCGTTTCGTATCGCAGTCTCCGGCCGAACTTCTCCTGATGCCGAAATGGGGATTGAAGAATCACGAGTTCACACACCTGATCCGTCGTCGCATTCAAGAACGCGATATCAGACAGGGACGGCACTGGAAAGGA","7.80","3.19","35988","MMIATNQGYREFGDYLRQVFPHYKVQKITLNAGFTCPNRDGLKGWGGCTYCNNQTFSPAFAMKDRSVSEQLRDGIAFFARKYPHMKYLAYFQAYTNTYGEQAEIIRKYEEALNYYDVVGIIIGTRPDCMPDSLLSYLKDLSERVFVLVEYGVESTLDATLRRVNRGHLWSDSMAAIERTAKTGLPIGVHLILGLPGESREDILRHADKISALPVTTLKLHQLQIIRGTAMAKEYAESPSDFHFYSEEEYIDLCLDFIERLRPDIVLERFVSQSPAELLLMPKWGLKNHEFTHLIRRRIQERDIRQGRHWKG","1153948 1154880","TIGR ID: PG1087","conserved hypothetical protein","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 3-283 are 39% similar to gb|AAC06843.1| conserved hypothetical protein of Aquifex aeolicus, residues 5-289 are 34% similar to pir||D69999 conserved hypothetical protein ytqA of Bacillus subtilis, residues 9-293 are 35% similar to gb|AAD35600.1|AE001728_1 conserved hypothetical protein of Thermotoga maritima. This sequence is similar to BT4125.","
InterPro
IPR005911
Family
Conserved hypothetical protein 1212
TIGR01212\"[9-311]TCHP1212
InterPro
IPR006638
Domain
Elongator protein 3/MiaB/NifB
SM00729\"[26-255]TElp3
InterPro
IPR007197
Domain
Radical SAM
PF04055\"[30-209]TRadical_SAM
InterPro
IPR013785
Domain
Aldolase-type TIM barrel
G3DSA:3.20.20.70\"[10-241]TAldolase_TIM
noIPR
unintegrated
unintegrated
PTHR11135\"[87-278]TPTHR11135
SSF102114\"[20-300]TSSF102114


","BeTs to 5 clades of COG1242COG name: Uncharacterized FeS oxidoreductasesFunctional Class: RThe phylogenetic pattern of COG1242 is -m---qv-eb-----------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 107-230 are 37% similar to a (PROTEIN BIOSYNTHESIS OXIDASE COPROPORPHYRINOGEN III) protein domain (PD000690) which is seen in O35008_BACSU.Residues 24-100 are 50% similar to a (PROTEIN YTQA ARCB-GLTB INTERGENIC REGION) protein domain (PD016462) which is seen in YHCC_ECOLI.Residues 149-268 are 43% similar to a (PROTEIN SYNTHETASE SYNTHASE IRON-SULFUR BIOTIN) protein domain (PD003026) which is seen in O66879_AQUAE.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Feb 6 15:37:20 MST 2001","Mon Jan 5 10:55:38 2004","Tue Feb 6 15:37:20 MST 2001","","Mon Jan 5 10:55:38 2004","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Jan 5 10:55:38 2004","No significant hits to the PDB database (E-value < E-10).","","","Residues 30 to 209 (E-value = 8e-15) place PG0968 in the Radical_SAM family which is described as Radical SAM superfamily (PF04055)","","34540822","","","","","","1","","","PG1087" "PG0969","1155519","1154938","582","TTGAACCAAAATCTTGAAACAATGCTTCGATTTTCTGACTTAAAGTCCTTCTCCGATGCAGACCGATCGGCAGCTCTCCGGTATGTATGGGAGCTGTACACGACTTCGTTTCCTGCAGAAGAGAGACGCTCGTATGACAATTTCTTACGTGCGGTTCTTTCCGACCCATATTGCAGCCTCTTTCTGATCGGCGAACGTGATGTAGTGGAAGAGACCAAAGGTTTTATCATTAGCTGGGTCTTGTCCCCCGAATTGTCTTTTATCGAGCATTTTGCCATCGCTCCTGAATGGAGAAATCATAAAATCGGGCAGGCTTGTATTGAAATGATGACAGCATTGGCTCTATCCTCGCATTCATGTATACTGCTGGAAGCAGAGCCTCCCCTGACGGAGATTGCCCGACGACGAATAGGCTTTTATGAAAGAGCCGGATTCGAAATTATTGATGCCGACTATATACAGCCTCCGTATGAAGAGACCGGTAGGGGAGTGCCGCTGTACTTGATGGCCTATAATAAGGGGGGGATTGATACGAAGAGTGCAACGAGACTGTTGTATGGAGCAGTCTATAATTGCCCACAT","4.90","-7.22","22191","LNQNLETMLRFSDLKSFSDADRSAALRYVWELYTTSFPAEERRSYDNFLRAVLSDPYCSLFLIGERDVVEETKGFIISWVLSPELSFIEHFAIAPEWRNHKIGQACIEMMTALALSSHSCILLEAEPPLTEIARRRIGFYERAGFEIIDADYIQPPYEETGRGVPLYLMAYNKGGIDTKSATRLLYGAVYNCPH","1155519 1154938","TIGR ID: PG1088","hypothetical protein","Cytoplasm","No significant hits in gapped BLAST.","
InterPro
IPR000182
Domain
GCN5-related N-acetyltransferase
PF00583\"[68-146]TAcetyltransf_1
PS51186\"[15-171]TGNAT


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Feb 6 15:41:59 MST 2001","Tue Feb 6 15:41:59 MST 2001","Tue Feb 6 15:41:59 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540823","","","","","","1","","","PG1088" "PG0970","1156353","1155619","735","ATGGAAGAAAAAACAAGAATCTTTCTcTGCGAGGACGATAGTAATATCGGACCGCTCTTGAAAGAGTTTCTCGAGACAAAAGATTATATCGTCGATCTTTCTGGTGATGGAGAAGAGGGGTATTCCAACTATGTCAAGAATTCGTATGATATCTGTATCCTTGACATTATGATGCCACGTAAGGATGGCATCGCGTTGGCACAGGAAATACGGTTGATCGATCCGGATATCCCTATTATTTTCCTTAGTGCTAAAGCGAAGAAAGAAGATATTATCGAAGGATTCAAAATCGGAGCCGACGATTATGTCACCAAACCTTTCAGTATGGAAGAGTTGGCTATGCGTATCGAAGCCGTACTGCGACGCTGTGGCGGACGTTCGAACAAGTATATGCTCTACTACCGTATCGGTAAGTACTTGTTCGATACTCAGAAACAAACCATCGCGATCGATGATCAGGTAACTCGATTGACGACCAAAGAAAACGAGCTGTTGGCCCTGCTCTGTGCCAATGCTAATGAAACCCTTGAACGCAACTATGCCCTGAAGACGATATGGGCGGATGACAACTATTTCAATGCAAGAAGCATGGATGTTTATGTCACGAAGTTGCGTAAGCTCTTAAAAAGCGATCCTGAAATCGAGATTAAGAATATCCACGGAAAGGGCTATAAGCTGGTGACTCCGCTCAAAGAGAAAGAGAAGGAGTTATGTGAGGAGTTGATCAAAGAGGTC","4.90","-7.97","28308","MEEKTRIFLCEDDSNIGPLLKEFLETKDYIVDLSGDGEEGYSNYVKNSYDICILDIMMPRKDGIALAQEIRLIDPDIPIIFLSAKAKKEDIIEGFKIGADDYVTKPFSMEELAMRIEAVLRRCGGRSNKYMLYYRIGKYLFDTQKQTIAIDDQVTRLTTKENELLALLCANANETLERNYALKTIWADDNYFNARSMDVYVTKLRKLLKSDPEIEIKNIHGKGYKLVTPLKEKEKELCEELIKEV","1156353 1155619","TIGR ID: PG1089","probable inner membrane signal-transducing protein","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 1-229 are 66% similar to pir||S33662 rprY protein of Bacteroides fragilis, residues 1-229 are 61% similar to gb|AAB26174.1| RprY=inner membrane signal-transducing protein of Bacteroides fragilis, residues 1-225 are 31% similar to dbj|BAB05299.1| two-component response regulator of Bacillus halodurans.","
InterPro
IPR001789
Domain
Response regulator receiver
PD000039\"[6-121]TResponse_reg
PF00072\"[5-117]TResponse_reg
SM00448\"[5-116]TREC
PS50110\"[6-120]TRESPONSE_REGULATORY
InterPro
IPR001867
Domain
Transcriptional regulatory protein, C-terminal
PD000329\"[133-229]TTrans_reg_C
PF00486\"[151-226]TTrans_reg_C
InterPro
IPR011006
Domain
CheY-like
SSF52172\"[2-194]TCheY_like
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.2300\"[2-156]TG3DSA:3.40.50.2300
PTHR23283\"[2-122]TPTHR23283
PTHR23283:SF21\"[2-122]TPTHR23283:SF21


","BeTs to 8 clades of COG0745COG name: Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domainFunctional Class: T,KThe phylogenetic pattern of COG0745 is -----QVCEBRHUJ----inXNumber of proteins in this genome belonging to this COG is 3","***** PF00072 (Response regulator receiver domain) with a combined E-value of 5.8e-13. PF00072A 50-63 PF00072B 98-107","Residues 6-121 are 44% similar to a (PROTEIN SENSORY TRANSDUCTION PHOSPHORYLATION REGULATOR) protein domain (PD000039) which is seen in YC27_GUITH.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Tue Feb 6 16:07:20 MST 2001","Fri May 4 17:10:36 MDT 2001","Tue Feb 6 16:07:20 MST 2001","Mon Apr 2 14:35:32 MDT 2001","Mon Apr 2 14:35:32 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 6-227 are 29% similar to PG0650, a predicted response regulator protein. Similarities are also seen to PG1571, a predicted adenylate cyclase protein.","Mon Apr 2 14:35:32 MDT 2001","Mon Apr 2 14:35:32 MDT 2001","-48% similar to PDB:1YS6 Crystal structure of the response regulatory protein PrrA from Mycobacterium Tuberculosis (E_value = 6.3E_22);-48% similar to PDB:1YS7 Crystal structure of the response regulator protein prrA comlexed with Mg2+ (E_value = 6.3E_22);-47% similar to PDB:2GWR Crystal structure of the response regulator protein mtrA from Mycobacterium Tuberculosis (E_value = 1.3E_19);-48% similar to PDB:1KGS Crystal Structure at 1.50 A of an OmpR/PhoB Homolog from Thermotoga maritima (E_value = 2.9E_19);-62% similar to PDB:1MVO Crystal structure of the PhoP receiver domain from Bacillus subtilis (E_value = 1.1E_18);","","","Residues 5 to 124 (E-value = 2.7e-33) place PG0970 in the Response_reg family which is described as Response regulator receiver domain (PF00072)Residues 151 to 226 (E-value = 7.7e-17) place PG0970 in the Trans_reg_C family which is described as Transcriptional regulatory protein, C terminal (PF00486)","Mon Apr 2 14:35:32 MDT 2001","34540824","","","Rasmussen,B.A. and Kovacs,E. 1993. Cloning and identification of a two-component signal-transducing regulatory system from Bacteroides fragilis. Mol. Microbiol. 7 (5): 765-776. PubMed: 8469117.","Mon Apr 2 14:35:32 MDT 2001","Tue Feb 6 16:07:20 MST 2001","1","","","PG1089" "PG0971","1157160","1158152","993","ATGGTAGAGGAGGCAGAGCGCATCGCTCTGATCTCGCATACGGCTCCGGACGGCGACTCGGTAGGAAGCAGTATCGGTTTTGCTGCCATGCTGAGAGAAAAAGGCAAGTCCCACATCAGTGTAATCGTACCTGATGATATTCCCCAATACCTGTACTGCATTCCGGGAGCAAACAAAGTAATAGTGCACGAGACTCATCCTTCGGAGGCGGAGAAGGCATTGGCTGAAGCCGATCTGGTCTTCTGCATGGATTTCAATGCTCCACATCGGGTAGCAGGACTGCAAAGCGCATTGGAGAGTTCGTCAGCCCCCAAAGTGCTTATCGATCATCATCTCTATCCGGCAGATATCTTCACTCTCAGCTTCAGCTACCCCCCCCTGTCTTCTACTTCGGAGTTGGTCTTGCGTTTGGCCAAGGCCATAGGCATGGAGTCCTACCTGACCCAAGATGCGGCCACGGCTTTGATGACAGGGATACTGACGGATACGGGCGTATTTTCCTACAGCTCTTCCGATCCGGATCTTTATCTGCTCGTAGCAGATCTTATGCGAGCCGGTGCGGACAAAGACACGATCATCCGCAATACCTTTCAGCAAAATTCGGAAGGCAAGATGAGGATGCAGGGTTATGTGCTGTACGAGAAAATGACTTTGCTGCCGGAAATGGGCGTAGCATACTTCACGCTGTCAGCAGAGGAGCTGGTACGATTCCACAACCGGACGGGTGATACCGATGGTCTGGCCAATCTGCCCCTCGATATTGCAGGGATAGAGGCTGTATGTTTCCTGCGAGAGGACAAAAATCAGATCAAGCTCTCATTCCGCTCCACAGGCAACTATCCGGTGAACACCCTTGCCGAGAACTTCGGTGGCGGCGGACACAAGAATGCTGCCGGCGGCGAGTTCCAAGGCAGTCTGCAAGAAGCTACAGAAAAGCTGCTGAAGATTTGGAAAGACTTCAACCCCAAGAATTACAATAATAAGAACCAACAA","5.00","-11.96","36207","MVEEAERIALISHTAPDGDSVGSSIGFAAMLREKGKSHISVIVPDDIPQYLYCIPGANKVIVHETHPSEAEKALAEADLVFCMDFNAPHRVAGLQSALESSSAPKVLIDHHLYPADIFTLSFSYPPLSSTSELVLRLAKAIGMESYLTQDAATALMTGILTDTGVFSYSSSDPDLYLLVADLMRAGADKDTIIRNTFQQNSEGKMRMQGYVLYEKMTLLPEMGVAYFTLSAEELVRFHNRTGDTDGLANLPLDIAGIEAVCFLREDKNQIKLSFRSTGNYPVNTLAENFGGGGHKNAAGGEFQGSLQEATEKLLKIWKDFNPKNYNNKNQQ","1157112 1158152","TIGR ID: PG1091","conserved hypothetical protein","Cytoplasm","Several significant hits to conserved hypothetical protein in gapped BLAST; e.g. residues 1-304 are 28% similar to gb|AAD36662.1|AE001804_6 conserved hypothetical protein of Thermotoga maritima, residues 8-319 are 30% similar to pir||F70440 conserved hypothetical protein of Aquifex aeolicus, residues 2-308 are 29% similar to gb|AAC65424.1| conserved hypothetical protein of Treponema pallidum.","
InterPro
IPR001667
Domain
Phosphoesterase, RecJ-like
PF01368\"[1-160]TDHH
InterPro
IPR003156
Domain
Phosphoesterase, DHHA1
PF02272\"[257-315]TDHHA1
noIPR
unintegrated
unintegrated
G3DSA:3.90.1640.10\"[5-200]TG3DSA:3.90.1640.10
PTHR13734\"[1-310]TPTHR13734
PTHR13734:SF4\"[1-310]TPTHR13734:SF4
SSF64182\"[6-291]TSSF64182


","BeTs to 8 clades of COG0618COG name: Exopolyphosphatase-related proteinsFunctional Class: RThe phylogenetic pattern of COG0618 is aM-K-QVC-Br---GPoL---Number of proteins in this genome belonging to this COG is 1","***** PF01368 (DHH family) with a combined E-value of 2.3e-06. PF01368A 105-111 PF01368B 290-300","Residues 105-287 are 28% similar to a (PROTEIN CONSERVED MGPA MG371) protein domain (PD003055) which is seen in O67552_AQUAE.","","Wed Jun 13 15:01:01 MDT 2001","","Wed Jun 13 15:01:01 MDT 2001","Wed Jun 13 15:01:01 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Jun 13 15:01:01 MDT 2001","Wed Jun 13 15:01:01 MDT 2001","","","Tue Feb 6 16:21:08 MST 2001","Tue Jun 19 08:42:35 MDT 2001","Tue Feb 6 16:21:08 MST 2001","Tue Jun 19 08:42:35 MDT 2001","Tue Jun 19 08:42:35 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Jun 13 15:01:01 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 1 to 160 (E-value = 2.1e-14) place PG0971 in the DHH family which is described as DHH family (PF01368)Residues 257 to 315 (E-value = 7.6e-09) place PG0971 in the DHHA1 family which is described as DHHA1 domain (PF02272)","Tue Jun 19 08:42:35 MDT 2001","34540825","","","","","","1","","","PG1091" "PG0972","1158264","1158839","576","TTGGCCATAGGTATGGCTGTTTTGACATTGGGCAGTTGTAAGAAAAGCGACATCAAATCGCTCAAAGAAATGAAGAAGGACGAACGCAAAGCCATCGAATCCTTCATCAATAGGATGGGTTTTACCATCAAAGATGGGCACGAGGGCCAAAGCGAATTCGATCCCGATATCATGTACCACTTCGACAACGATCTTTATATGCAGGTACTGGATAAGGGGAAAGAGCCTCCCGTGCTGAACAAGACCAAGATCAACGTCAGGATGGAAGGTTTCATGTTCAATCGTGAGAGGGACTCCATCTATGTCTTCAACAGTCTCACTTCAGGCGGTTTTCAGGAGAGCGTATTCCGCTATATATATAAGTACAACGATGGGGATATTCACTTCGAACTGATCAAATGTACGACCGGTTCCAACCTGGATATGTTCGTCTGCGAAGGAGTCGCTTTCCCCATGACCATGCTTGGCAATAAAGCTCGCGTGCGCCTGATCGTACCTTTCCGAATCGGCCCGGAATCGCTCTATTCGCGAGGCCTGACCGGATATTACAAGGAAGTGGAATACGTATTTCGGGAC","7.40","0.58","22162","LAIGMAVLTLGSCKKSDIKSLKEMKKDERKAIESFINRMGFTIKDGHEGQSEFDPDIMYHFDNDLYMQVLDKGKEPPVLNKTKINVRMEGFMFNRERDSIYVFNSLTSGGFQESVFRYIYKYNDGDIHFELIKCTTGSNLDMFVCEGVAFPMTMLGNKARVRLIVPFRIGPESLYSRGLTGYYKEVEYVFRD","1158231 1158839","TIGR ID: PG1093","hypothetical protein","Cytoplasm, Inner membrane","This sequence corresponds to gi:34397140 in Genbank.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Wed Jun 13 14:58:42 MDT 2001","","Wed Jun 13 14:58:42 MDT 2001","Wed Jun 13 14:58:42 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Jun 13 14:58:42 MDT 2001","Wed Jun 13 14:58:42 MDT 2001","","","Tue Feb 6 16:31:31 MST 2001","Fri Mar 4 14:32:13 2005","Tue Feb 6 16:31:31 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Jun 13 14:58:42 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Jun 19 08:43:29 MDT 2001","34540826","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Fri Mar 4 14:32:13 2005","","1","","","PG1093" "PG0973","1158896","1160281","1386","ATGACGTTGATCAAATCAATCTCCGGCATACGAGGCACGATAGGCGGTATGGCCGATGAGGGATTAAATCCTATCAGCATAGCCCAATTCACAGCTGCCTATGCTCATTTCATCAAAAAGTTAACTAAAACCAAACGCCCCTGTATCGTAGTCGGTAGGGATGCTCGCCCGTCCGGACTCATGGTCAAGAATGTCGTTTTCGGCACTCTCATGGGAATGGGATGCGATGTGGTCGATATAGATTTGGCCACGACTCCCACTACCGAAATGGCCGTCACGGGCTGTGGTGCCGATGGCGGTATCATCATCACAGCCAGCCACAATCCCGTACAGTGGAATGCGCTGAAGCTCTTAGGCCCTTCCGGCGAATTTCTCAATGATGCAGAAGGGAAAGAGATTCTTCGGATAGCAGAAGCCGGAGAAGCCGAGTTTGCTCCGGTGGAGAAGATGGGACGCCTCGCCGATACGCTGGACTACACACCGGCGCATATCAAAGCCGTATTGGCATTGCCGTCAGTCGATGTGGCAGCCATCCGTGCAGCCAAATTCAAGGTAGCTATCGACTGTGTCAATTCCGTAGGAGGAATAGCGATACCGGCTCTGTTGACTGCCTTGGGAGTGGAGCACGTCTTCCCTCTTTACTGCACACCGGACGGACAGTTTCCTCACAATCCGGAACCCTTGCCGCAGAATCTGACCGAAATATGCAAGGTAGTCAAGGAGAAGAAAGCCAATGTGGGTTTCGTGGTCGATCCTGATGTGGATCGCTTGGCTATCGTAGATGAGAACGGAGAGTTTTTCGGAGAAGAATATACTCTCGTAGCCATAGCCGATTATCTGTTGGGACTCAACGGTGGCGGCAATACGGTATCGAACCTCAGCTCCACTCGTGCCCTTCGCGATGTAACGGCCCGACATGGTGGAAAATACGAAGCAGCAGCCGTCGGAGAGGTGAACGTGGTGACGAAGATGAAAGAAATCGGCGCCCTCATCGGAGGAGAAGGCAATGGCGGAGTAATCCTTCCGGAGCTTCATTATGGACGCGATGCATTGGTGGGAATAGCCCTATTCCTCACACATATGGCCAAGCGCAAGGAGGCGGTGAGCCGCATTCGAGCCGAATACCCTGCATACTTTATGAGCAAGCAGCGAGTGGACACCCCTGCAGGTACCGATACGCAGCGTCTGCTTCAGACCATGTTCGAAAGGTATAAGAACGAACAGATCAGTACCGTGGACGGCGTGAAGATCGACTTTCCCGACAGCTGGGTACATATGCGCAGGAGCAATACCGAGCCGATCGTCAGGATCTACACCGAAGCCCGTACGGAAAAGGAAGCACAGGACTTGGCCGATCGTTTCCGTTCGGAGATAGAACGAGAATTG","5.80","-7.08","49915","MTLIKSISGIRGTIGGMADEGLNPISIAQFTAAYAHFIKKLTKTKRPCIVVGRDARPSGLMVKNVVFGTLMGMGCDVVDIDLATTPTTEMAVTGCGADGGIIITASHNPVQWNALKLLGPSGEFLNDAEGKEILRIAEAGEAEFAPVEKMGRLADTLDYTPAHIKAVLALPSVDVAAIRAAKFKVAIDCVNSVGGIAIPALLTALGVEHVFPLYCTPDGQFPHNPEPLPQNLTEICKVVKEKKANVGFVVDPDVDRLAIVDENGEFFGEEYTLVAIADYLLGLNGGGNTVSNLSSTRALRDVTARHGGKYEAAAVGEVNVVTKMKEIGALIGGEGNGGVILPELHYGRDALVGIALFLTHMAKRKEAVSRIRAEYPAYFMSKQRVDTPAGTDTQRLLQTMFERYKNEQISTVDGVKIDFPDSWVHMRRSNTEPIVRIYTEARTEKEAQDLADRFRSEIEREL","1158896 1160281","This protein is induced by D-mannose 6-phosphate. It converts D-mannose 1-phosphate to D-mannose 6-phosphate. The transfer of a functional group from one position to another on a molecule is catalyzed by a mutase. In Pseudomonas aeruginosa, PMM is one of at least three activities required for supplying GDP-D-mannose to A-band LPS synthesis (Tavares et al., 1999. PubMed: 10209766.TIGR ID: PG1094","phosphomannomutase or phosphoglucomutase","Cytoplasm, Inner membrane","This protein is similar to CT815, a predicted phosphoglucomutase or phosphomannomutase, and to BT3950.Numerous significant hits to probable phosphomannomutase protein and probable phospho-sugar mutase protein in gapped BLAST; e.g. residues 12-462 are 34% similar to gbAAB86057.1 phosphomannomutase of Methanothermobacter thermautotrophicus, residues 12-449 are 33% similar to pirE71082 probable phospho-sugar mutase 2 of Pyrococcus horikoshii, residues 12-449 are 33% similar to pirH75104 phosphomannomutase of Pyrococcus abyssi (strain Orsay).","
InterPro
IPR005841
Family
Phosphoglucomutase/phosphomannomutase
PR00509\"[99-113]T\"[182-201]T\"[244-259]TPGMPMM
PS00710\"[100-109]TPGM_PMM
InterPro
IPR005843
Domain
Phosphoglucomutase/phosphomannomutase C-terminal
PF00408\"[409-460]TPGM_PMM_IV
InterPro
IPR005844
Domain
Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I
PF02878\"[8-144]TPGM_PMM_I
InterPro
IPR005845
Domain
Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II
PF02879\"[161-266]TPGM_PMM_II
InterPro
IPR005846
Domain
Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III
PF02880\"[267-378]TPGM_PMM_III
noIPR
unintegrated
unintegrated
G3DSA:3.30.310.50\"[403-460]TG3DSA:3.30.310.50
G3DSA:3.40.120.10\"[9-140]T\"[184-260]T\"[261-378]TG3DSA:3.40.120.10
PTHR22573\"[66-462]TPTHR22573
PTHR22573:SF2\"[66-462]TPTHR22573:SF2
SSF53738\"[268-375]TSSF53738
SSF55957\"[375-460]TSSF55957


","BeTs to 17 clades of COG1109COG name: PhosphomannomutaseFunctional Class: GThe phylogenetic pattern of COG1109 is aMTKYQVCEBRHUJgpOLINxNumber of proteins in this genome belonging to this COG is 2","***** IPB001485 (Phosphoglucomutase and phosphomannomutase family) with a combined E-value of 7e-21. IPB001485B 47-56 IPB001485C 100-114 IPB001485D 245-256 IPB001485E 420-441","Residues 342-450 are 35% similar to a (PHOSPHOMANNOMUTASE PROTEIN ISOMERASE PHOSPHORYLATION PMM) protein domain (PD001709) which is seen in O29791_ARCFU.Residues 29-303 are 23% similar to a (MANNOSE-1-PHOSPHATE GUANYLTRANSFERASE TRANSFERASE) protein domain (PD041662) which is seen in O27786_METTH.Residues 12-122 are 42% similar to a (ISOMERASE PHOSPHOMANNOMUTASE PHOSPHORYLATION) protein domain (PD000667) which is seen in O58651_PYRHO.Residues 173-326 are 36% similar to a (ISOMERASE PHOSPHORYLATION PHOSPHOMANNOMUTASE) protein domain (PD000778) which is seen in Q50563_METTH.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Tue Jul 17 15:03:04 2007","Fri Apr 7 11:21:53 MDT 2000","Tue Jul 17 15:03:04 2007","Thu Feb 8 12:44:32 MST 2001","Mon Apr 2 14:37:58 MDT 2001","Mon Apr 2 14:37:58 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 9-357 are 23% similar to PG1754, a predicted phosphomannomutase (probable phosphoglucomutase).","Mon Apr 2 14:37:58 MDT 2001","Tue Jul 17 15:03:04 2007","-52% similar to PDB:1WQA Crystal Structure of Pyrococcus horikoshii phosphomannomutase/phosphoglucomutase complexed with Mg2+ (E_value = 5.8E_63);-48% similar to PDB:2F7L Crystal structure of Sulfolobus tokodaii phosphomannomutase/phosphoglucomutase (E_value = 5.5E_45);-49% similar to PDB:1K35 Crystal Structure of Phosphomannomutase/Phosphoglucomutase from P.aeruginosa (E_value = 2.2E_41);-49% similar to PDB:1P5D Enzyme-ligand complex of P. aeruginosa PMM/PGM (E_value = 2.2E_41);-49% similar to PDB:1P5G Enzyme-ligand complex of P. aeruginosa PMM/PGM (E_value = 2.2E_41);","","","Residues 2 to 144 (E-value = 1.1e-29) place PG0973 in the PGM_PMM_I family which is described as Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I (PF02878)Residues 161 to 266 (E-value = 9.6e-15) place PG0973 in the PGM_PMM_II family which is described as Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II (PF02879)Residues 267 to 378 (E-value = 1.4e-05) place PG0973 in the PGM_PMM_III family which is described as Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III (PF02880)Residues 380 to 460 (E-value = 2.8e-08) place PG0973 in the PGM_PMM_IV family which is described as Phosphoglucomutase/phosphomannomutase, C-terminal domain (PF00408)","Sat Jan 3 10:32:42 2004","34540827","","","Zielinski,N.A., Chakrabarty,A.M. and Berry,A. 1991. Characterization and regulation of the Pseudomonas aeruginosa algC gene encoding phosphomannomutase. J. Biol. Chem. 266(15): 9754-9763. PubMed: 1903398.","","Fri Apr 7 11:21:53 MDT 2000","1","","","PG1094" "PG0974","1160368","1161762","1395","GTGGAAATAACGGATCTGGCGGCAGAGGGCAATGCTCTCTGCCGCATTGATGATATGGTGATGTTCGTGCCTTTCGCTGCACCGGGCGACCGTTGCACGGTTCAGGTGGTAAAGAAAAAGCGCAACTTCATGCAGGGACGAATCGTCTCGATCGAAAGCCCCTCACCGATCAGGAAAGGACCTTTCTGTACGCACTTCACCGTCTGCGGCGGATGCAAATGGCAGCATATTCCATACGAGATACAGCTCCGAGCCAAGGAGCAGCAGGTGACCGATGCACTCGTGCGTCTGGGTAAGGTGGAGGTGGAGGAGATGCAGCCGATCCTCGGATCGGAGCAGACGGAGTACTACCGCAATAAGCTCGAATTTACATTCAGCAACAAACGTTGGCTACTGCCCGAAGAGGTACAGGAAGTCGATGGCGACTTCTCTCCCGAGGTGCGATACGGACTTGGATTCCATATCCCCGGCATGTTCGACAAGGTATTGGACATTCGCGAATGCCACTTGGGGGCTAAGGTATCGGACGAAATACGTCTCTTCATCCGCGAATATTGCATGCAGGATCCGGAGCGTTATCCTTTCTTCGACCTGAGAAATCAGGAAGGCCTGATGCGAACGCTGATGATCCGGACTACATCCACAGGAGAACTGATGGTAGTCGTGGTCTTCTTTCGCGACGATGTTGCTGCTCGAGAAGCTCTGCTTGCGGCCGTGGCGGAACGTTTCCCTCAGATCACCTCGCTCCTCTACGTGATCAATACCAAGTGCAACGACACGATAGGCGATCAGGAAGTGCTCCTGTACCATGGCAGGGAATACATTGAGGAGGAGATGGAAGGACTGAAGTTCAAGATCGGGGCTAAGTCTTTCTACCAGACCAATAGCCGGCAGGCCTACCAACTTTATCGGATAGCGCGCGAATTTGCCGGTCTCACAGGGGACGAACTGGTTTACGACCTCTATACCGGCACGGGGACGATTGCCAACTTCGTAGCCGGACAAGCCCATCGGGTAATCGGTATCGAATACGTACCCGAAGCCATTGAGGATGCCCGCACGAACAGCCTACTGAATGGAATAGAGAATACCCTCTTCTATGCAGGAGATATGAAAGACATCCTGACCAACGACTTCATCGAACAGCATGGACGTCCGGACGTCGTCATTACGGATCCGCCTCGAGCCGGCATGCACGAGAGTGTGATCGATGCCATCCTCTTTGCTGCACCCAGGAGGATAGTCTATGTCAGCTGCAATCCTGCCACACAAGCCCGCGATTTGGCTCTGCTGATGGCAGATGGCAGATACCGAGCCGTAAAATCCCGTCCGGTGGATATGTTTCCCCACACCCACCACGTAGAGAATGTGGTACTCCTCGTTCGAAATACCGAA","5.30","-12.73","52978","VEITDLAAEGNALCRIDDMVMFVPFAAPGDRCTVQVVKKKRNFMQGRIVSIESPSPIRKGPFCTHFTVCGGCKWQHIPYEIQLRAKEQQVTDALVRLGKVEVEEMQPILGSEQTEYYRNKLEFTFSNKRWLLPEEVQEVDGDFSPEVRYGLGFHIPGMFDKVLDIRECHLGAKVSDEIRLFIREYCMQDPERYPFFDLRNQEGLMRTLMIRTTSTGELMVVVVFFRDDVAAREALLAAVAERFPQITSLLYVINTKCNDTIGDQEVLLYHGREYIEEEMEGLKFKIGAKSFYQTNSRQAYQLYRIAREFAGLTGDELVYDLYTGTGTIANFVAGQAHRVIGIEYVPEAIEDARTNSLLNGIENTLFYAGDMKDILTNDFIEQHGRPDVVITDPPRAGMHESVIDAILFAAPRRIVYVSCNPATQARDLALLMADGRYRAVKSRPVDMFPHTHHVENVVLLVRNTE","1160329 1161762","TIGR ID: PG1095","probable tRNA methyltransferase","Cytoplasm","Numerous significant hits to putative RNA methyltransferase protein in gapped BLAST; e.g. residues 6-460 are 38% similar to dbj|BAB01724.1| RNA methyltransferase-like protein of Arabidopsis thaliana, residues 6-460 are 37% similar to dbj|BAB12711.1| putative RNA methyltransferase of Oryza sativa, residues 1-460 are 36% similar to dbj|BAB04406.1| RNA methyltransferase of Bacillus halodurans.This sequence is similar to BT0643.","
InterPro
IPR001566
Family
23S rRNA methyltransferase/RumA
TIGR00479\"[6-455]TrumA: 23S rRNA (uracil-5-)-methyltransferas
InterPro
IPR002792
Domain
Deoxyribonuclease/rho motif-related TRAM
PF01938\"[1-50]TTRAM
PS50926\"[1-50]TTRAM
InterPro
IPR010280
Family
(Uracil-5)-methyltransferase
PF05958\"[78-463]TtRNA_U5-meth_tr
PS01230\"[392-423]TTRMA_1
PS01231\"[445-455]TTRMA_2
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.150\"[302-454]Tno description
PTHR11061\"[1-462]TRNA M5U METHYLTRANSFERASE FAMILY
PTHR11061:SF2\"[1-462]TRNA M5U METHYLTRANSFERASE


","BeTs to 9 clades of COG2265COG name: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase (trmA)Functional Class: JThe phylogenetic pattern of COG2265 is aMTKYQVCEBRHUJgpOLINxNumber of proteins in this genome belonging to this COG is 1","***** IPB001566 (RNA methyltransferase trmA family) with a combined E-value of 2.2e-37. IPB001566A 291-309 IPB001566B 318-330 IPB001566C 389-399 IPB001566D 406-431 IPB001566E 445-460","Residues 388-462 are 40% similar to a (PROTEIN HTF9C ORF2 PRODUCT) protein domain (PD089804) which is seen in P70222_MOUSE.Residues 51-129 are 39% similar to a (PROTEIN METHYLTRANSFERASE TRANSFERASE RNA) protein domain (PD007501) which is seen in P73374_SYNY3.Residues 395-460 are 46% similar to a (PROTEIN METHYLTRANSFERASE TRANSFERASE RRNA RNA) protein domain (PD004091) which is seen in O84747_CHLTR.Residues 308-369 are 46% similar to a (PROTEIN METHYLTRANSFERASE TRANSFERASE L-ISOASPARTYL) protein domain (PD005261) which is seen in P70222_MOUSE.Residues 270-394 are 27% similar to a (PROTEIN) protein domain (PD121811) which is seen in O54099_STRCO.Residues 262-394 are 27% similar to a (RNA METHYLTRANSFERASE PROTEIN TRANSFERASE) protein domain (PD155875) which is seen in YBJF_HAEIN.Residues 162-335 are 29% similar to a (PROTEIN METHYLTRANSFERASE TRANSFERASE) protein domain (PD035416) which is seen in O31503_BACSU.","","Wed Jun 13 14:53:32 MDT 2001","","Wed Jun 13 14:53:32 MDT 2001","Wed Jun 13 14:53:32 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Jun 13 14:53:32 MDT 2001","Wed Jun 13 14:53:32 MDT 2001","","","Tue Dec 2 17:31:06 2003","Tue Dec 2 17:31:06 2003","Thu Feb 8 13:18:58 MST 2001","Tue Jun 19 08:53:51 MDT 2001","Tue Jun 19 08:53:51 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 22 19:21:04 MST 2001","-46% similar to PDB:1UWV CRYSTAL STRUCTURE OF RUMA, THE IRON-SULFUR CLUSTER CONTAINING E. COLI 23S RIBOSOMAL RNA 5-METHYLURIDINE METHYLTRANSFERASE (E_value = 2.7E_39);-46% similar to PDB:2BH2 CRYSTAL STRUCTURE OF E. COLI 5-METHYLURIDINE METHYLTRANSFERASE RUMA IN COMPLEX WITH RIBOSOMAL RNA SUBSTRATE AND S-ADENOSYLHOMOCYSTEINE. (E_value = 2.7E_39);","","","Residues 78 to 463 (E-value = 3.6e-06) place PG0974 in the tRNA_U5-meth_tr family which is described as tRNA (Uracil-5-)-methyltransferase (PF05958)","Tue Jun 19 08:53:51 MDT 2001","34540828","","","","","","1","","","PG1095" "PG0975","1161982","1163061","1080","TTGCCCCACATCGCTCATCGGAAAAATGGAACCTATGACCAATCCGGTTTTAATTGCTCTCTTTTTTGTTCTTTTGTGCAGAAACAAGGTTGTAGGACGATGATACAGCTAACTACCCCCGTTGAGAATCCGGTAATAAGAGAGAGGTTGATCTCTTATGCCAATAAGCTCTTTTTCGTTGGTTCCTGTTTCAGTTTGGAAGTTGGTTCCTATATGCGTCAAGCCGGATTTCGCACAGAGATCAATCCTTTTGGGATCATGTACAATCCCCTGTCTATTGCCGGATGTATCGGCCGATTGCTCGATCCTGTACCTTATCAGGCAGAAGAGTTGTTCGAATACGATGGTTTATTTCATAGTTTCGATCATCACGGAGCTTTTTCTCATGCAAAAAAAGAAGAAACCCTGCAGCATCTCAATGACAGCCTACATGTCGGTCACGAGGCTTTGCTTCGTTCCGACAGGCTTTTCTTTACGTGGGGGACGGCCTTCGTCTACAACTATGTCAGTGCCAATAAGGTAGTGGCTAATTGTCATAAACTGCCCGAACGCCTCTTTCGTAGGCAGATGGTCGGCATTGACGACTTACTGGCCGTCTGGATCCCTCTCATAGAGCGACTGCTGAGTTCTTCTCCCGATCGTAGAATCATTCTTACGGTCAGCCCCGTACGTCATCTTCGCGATGGAGCTGTAGGAAATCAGCAAAGCAAAGCCACTCTTGTCCTTTTCTGTAAGGCATTGACAGGGCGTTTCCCCGAACATCTTTATTATTTCCCTGCCTATGAGATAATGATGGACGAACTGCGTGACTATCGCTACTATGCAGACGATATGACTCATCCATCCTCTTTGGCTGTTTCGATCATACGCGAACGCTTTGCCGATATTTTCGTGGAAAAGGATCATCGAGAGGCTATGGATGCCTGTCTCAAACTCCGACGCCGCATGGCACACAGGCCTTTACATCCTGACAGCCCTGATGCTATGCTCTTTGAAGCGCAAACGCAGACACTCGTCAGTGCACTGCTGCGTAAGTATCCGGATTTAGTTTTAGACGATATTGCGGGCGAAATGGAATCT","7.10","0.49","41360","LPHIAHRKNGTYDQSGFNCSLFCSFVQKQGCRTMIQLTTPVENPVIRERLISYANKLFFVGSCFSLEVGSYMRQAGFRTEINPFGIMYNPLSIAGCIGRLLDPVPYQAEELFEYDGLFHSFDHHGAFSHAKKEETLQHLNDSLHVGHEALLRSDRLFFTWGTAFVYNYVSANKVVANCHKLPERLFRRQMVGIDDLLAVWIPLIERLLSSSPDRRIILTVSPVRHLRDGAVGNQQSKATLVLFCKALTGRFPEHLYYFPAYEIMMDELRDYRYYADDMTHPSSLAVSIIRERFADIFVEKDHREAMDACLKLRRRMAHRPLHPDSPDAMLFEAQTQTLVSALLRKYPDLVLDDIAGEMES","1161982 1163061","TIGR ID: PG1096","conserved hypothetical protein","Cytoplasm","This sequence corresponds to gi:34397143 in Genbank.Its nearest neighbor in the NR database is gi:53712186 from Bacteroides fragilis YCH46.","
InterPro
IPR014982
Domain
GSCFA
PF08885\"[55-293]TGSCFA


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Mar 4 14:38:53 2005","Fri Mar 4 14:38:53 2005","Tue Feb 6 16:57:10 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Mar 4 14:38:53 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540829","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Fri Mar 4 14:38:53 2005","","1","","","PG1096" "PG0976","1163100","1165568","2469","ATGTTTCTTTTCTCCGAACTATGCAGACGTTTATCCCCTGATGCGGTAAGAATCGTTAGCGATCACCGGATCGTCCATTTGCTTACCGATAGCCGTACGCTGTCCGAACCTGCTACTACTCTCTTCTTCGCCTTACGCACCACATCGGGCGATGGCCATTTGTATATTCGAGATCTATATGATAGAGGAGTAAGGAGTTTTGTCATTTCGGATCCCTCCAAAGATTTGATGGAGAAAATGCCGCAAGCGAATTGGATGCGCGTGGCTCATCCGTTGGACGCTCTACAACGGATAGCCGCACTAAGGCGTTCTATGTTCGATATTCCTGTGATAGGAATTACCGGAAGCAATGGCAAGACAATCGTCAAAGAGTTCCTTTATCAGTTATTGCGCAAGGACTATCGCATTGTCCGCTCGCCCCGAAGCTATAACTCGCAGATAGGAGTACCCCTTTCCGTATGGCAAATGGCGGAGGAACACACTCTCGGTATATTTGAGGCCGGCATATCGCAAATGGGGGAAATGGAACGTTTGGAGAGCATAATATGCCCCTCGTATGGTATCATTACGAATATAGGAGGTGCTCATCAGGAGAACTTCCCGGATATAAAAACGAAACTGGAGGAAAAGCTCCGCTTGTTTCTCCATTGTCATACTATTGTCTATAACGGCGACTGCGAAGAGATAGCTGCTGCTATCTCTTTCTGCGGTTTGGCAAGAGCCGGAGTTTCATGGAGCCGGACGAAGCCCGAAGCTCATTTGTATGTGTGCAGATTGGAATCGAAAGATAATCGCACCGAGATTGATTTTCGCTGTCTCGGCAAAGATTATTCTCTTGTGCTACCATTCACAGATGCTGCTTCCATAGAAGATATCATCCATTGCATCACGCTGATTTCTGTACTGTGTCCGGAGGTCTTATCTGCTCGAAAGCGGTTTGCAGGTTTAGAGCCTGTAGAAATGCGAATGGAGGTTAAGGCCGGAGATCATGGCAATACGATCATCAATGACGTTTACAGTAATGATGTCTATTCGCTCACGCTGGCCTTGGACTTCCAACGAAGACGTACTGCCGAAACATGCCTAAAGAAAGTGTTGATACTGTCCGACATCTTGCAAAGCGGAATGCCTCCCGAAGAATTGTACAGGCATGTGGCAGGACAATTACAAGTCTATGCCCTTGACTTTTTCGTCGGCATCGGAGAGGAAATAGCCTCGCATCGCACTTGTTTTGCCGGCATGTCTGCCGTTTTTTTCAAAGATGTTGCTACATTCTTGACATCCGGTGAGATAGAGCGCTTCTCCAACAGCTGTATTCTGCTCAAAGGTGCACGCAAGTATCGCTTCGAACAGATTACGGAGCGACTTGTACAACAGGTGCACGAAACTGCGCTAAGGATCAATCTGTCAGCTATCATCCATAATCTTAATTTCTATCGGAATTTAGTTCCATCAGGCACCAAAACCATCTGCATGGTCAAGGCTCAGGGATATGGCGTAGGCTCCTACGAACTTGTCAAAACCCTGCAGGAGCATCGTGTGGATTATATAGCTGTAGCCGTAGCGGACGAAGGCAAAGAACTAAGAGAGCGAGGTATCGGTATGCCTATCGTGGTCATGAACCCCCAAAGGAATGCCTTTCAGACACTCATAGACTACGGATTAGAGCCTGAGATTTATAGCTTTGCCCTTCTCGCTTCTTTTTCGGAAACGGTCGTACGCAACGGCCTTGTGGGCTATCCTGTTCATATCAAAATCGACACGGGAATGCATCGGCTTGGTTTTTTACCGTCTGATATGACACGACTCGGTGAGATTCTTGCCAAAGATGCCGGACTGAGCATTCGCTCTGTATTTACCCATCTTGCAGGTGCCGACGATCCTGATTTGGATGATTTTACGCGATCTCAACTGCTGTCTTTCGATGCTGCTTTCGCCTCTCTCTCCTCTTTATTAGGCTATATACCTCTCCGTCATGTATTGAATACGGCAGGGGTAGAGCGTTTTGCCGACTACCATGCCGACATGATTCGTCTTGGCATCGGCTTGTATGGAGTAACGGCATCCGGCGTACAAGGATTGAGACCGGTAGCCACCCTGATGACTACAATTTTGCAGATCAAGGATATTTCTTCGAGCGATACGGTCGGATATGGACGTAAAGGACGGGTACAACAACCATCTCGAATAGCTATTATACCTATCGGTTATGCCGATGGCTTGGATAGACGTTTGAGTTGTGGAGTAGGAGAAGTACTTGTGCGTGGACATCGCTGTCCTATAGTAGGGAATGTCTGTATGGATATCTGTATGATAGATGTTACCGGTATGCCGGCAGAAGAGGGAGACCCTGTCGTTGTATTCGGAGAAGAACTCCCGATCGAAGAAGTTGCCCGTAAGATGAATACTATCCCCTATGAGGTGCTCACGGGTATCTCGCCTCGTGTTCGCAGAGTTTATTTCCAAGAG","6.70","-4.43","91869","MFLFSELCRRLSPDAVRIVSDHRIVHLLTDSRTLSEPATTLFFALRTTSGDGHLYIRDLYDRGVRSFVISDPSKDLMEKMPQANWMRVAHPLDALQRIAALRRSMFDIPVIGITGSNGKTIVKEFLYQLLRKDYRIVRSPRSYNSQIGVPLSVWQMAEEHTLGIFEAGISQMGEMERLESIICPSYGIITNIGGAHQENFPDIKTKLEEKLRLFLHCHTIVYNGDCEEIAAAISFCGLARAGVSWSRTKPEAHLYVCRLESKDNRTEIDFRCLGKDYSLVLPFTDAASIEDIIHCITLISVLCPEVLSARKRFAGLEPVEMRMEVKAGDHGNTIINDVYSNDVYSLTLALDFQRRRTAETCLKKVLILSDILQSGMPPEELYRHVAGQLQVYALDFFVGIGEEIASHRTCFAGMSAVFFKDVATFLTSGEIERFSNSCILLKGARKYRFEQITERLVQQVHETALRINLSAIIHNLNFYRNLVPSGTKTICMVKAQGYGVGSYELVKTLQEHRVDYIAVAVADEGKELRERGIGMPIVVMNPQRNAFQTLIDYGLEPEIYSFALLASFSETVVRNGLVGYPVHIKIDTGMHRLGFLPSDMTRLGEILAKDAGLSIRSVFTHLAGADDPDLDDFTRSQLLSFDAAFASLSSLLGYIPLRHVLNTAGVERFADYHADMIRLGIGLYGVTASGVQGLRPVATLMTTILQIKDISSSDTVGYGRKGRVQQPSRIAIIPIGYADGLDRRLSCGVGEVLVRGHRCPIVGNVCMDICMIDVTGMPAEEGDPVVVFGEELPIEEVARKMNTIPYEVLTGISPRVRRVYFQE","1163100 1165568","Gapped BLAST hits tend to correspond to residues 0-450 and residues 450-800. This may be an incorrectly predicted orf.TIGR ID: PG1097","alanine racemase; N-acetylymuramoylalanyl-D-glutamate-2,6,-diaminopimelate-D-alanine-D-alanine ligase","Cytoplasm","Numerous significant hits to alanine racemase protein in gapped BLAST; e.g. residues 456-823 are 32% similar to pirF69888 alanine racemase homolog yncD of Bacillus subtilis, residues 465-820 are 30% similar to gbAAD06456.1 alanine racemase of Helicobacter pylori J99, residues 462-822 are 33% similar to alanine racemase of Bacillus stearothermophilus.This sequence is similar to BT4101.","
InterPro
IPR000821
Domain
Alanine racemase region
PR00992\"[486-502]T\"[522-540]T\"[583-595]T\"[617-628]T\"[661-688]T\"[713-728]T\"[752-769]T\"[803-816]TALARACEMASE
TIGR00492\"[461-822]Talr
InterPro
IPR001608
Domain
Alanine racemase, N-terminal
PF01168\"[462-689]TAla_racemase_N
InterPro
IPR005863
Family
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanyl ligase
PTHR23135:SF3\"[113-462]TMurF
InterPro
IPR009006
Domain
Alanine racemase/group IV decarboxylase, C-terminal
SSF50621\"[693-820]TRacem_decarbox_C
InterPro
IPR011079
Domain
Alanine racemase, C-terminal
PF00842\"[697-821]TAla_racemase_C
InterPro
IPR013221
Domain
Mur ligase, middle region
PF08245\"[111-232]TMur_ligase_M
noIPR
unintegrated
unintegrated
G3DSA:2.40.37.10\"[684-820]TG3DSA:2.40.37.10
G3DSA:3.20.20.10\"[456-683]TG3DSA:3.20.20.10
G3DSA:3.40.1190.10\"[89-317]TG3DSA:3.40.1190.10
PTHR23135\"[113-462]TPTHR23135
SSF51419\"[467-705]TSSF51419
SSF53244\"[319-457]TSSF53244
SSF53623\"[107-318]TSSF53623
SSF63418\"[2-105]TSSF63418


","BeTs to 9 clades of COG0787COG name: Alanine racemaseFunctional Class: MThe phylogenetic pattern of COG0787 is -----q-cEBrhuj--ol--xNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Mon Jan 5 10:53:53 2004","Mon Nov 13 11:44:20 MST 2000","Tue Jul 29 17:15:37 2008","Fri Mar 9 15:53:01 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 29-452 are 28% similar to PG0985, a predicted UDP-N-Acetylmuramoylalanyl-D-glutamyl-26-diaminoligase. Similarities are also seen to PG0518, a predicted N-acetylymuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase.","Mon Apr 2 14:41:33 MDT 2001","Tue Jul 29 17:15:37 2008","-49% similar to PDB:1BD0 ALANINE RACEMASE COMPLEXED WITH ALANINE PHOSPHONATE (E_value = 2.8E_42);-49% similar to PDB:1EPV ALANINE RACEMASE WITH BOUND INHIBITOR DERIVED FROM D-CYCLOSERINE (E_value = 2.8E_42);-49% similar to PDB:1FTX Crystal stucture of alanine racemase in complex with D-alanine phosphonate (E_value = 2.8E_42);-49% similar to PDB:1L6F Alanine racemase bound with N-(5'-phosphopyridoxyl)-L-alanine (E_value = 2.8E_42);-49% similar to PDB:1L6G Alanine racemase bound with N-(5'-phosphopyridoxyl)-D-alanine (E_value = 2.8E_42);","","","Residues 38 to 308 (E-value = 7.2e-13) place PG0976 in the Mur_ligase family which is described as Mur ligase family, catalytic domain (PF01225)Residues 462 to 689 (E-value = 3.1e-52) place PG0976 in the Ala_racemase_N family which is described as Alanine racemase, N-terminal domain (PF01168)Residues 697 to 821 (E-value = 6.2e-53) place PG0976 in the Ala_racemase_C family which is described as Alanine racemase, C-terminal domain (PF00842)","Mon Jan 5 10:53:53 2004","34540830","","","","","","1","","","PG1097" "PG0977","1167102","1165882","1221","ATGCTATTCGACGAAAAAGAGATTCTCGCCATTACGCGATGGGCTAAGCTCTATGCCAACCAATCACCCGACAGAATTCTGTTGGGGAGCAATGATATTCCTCCGGAGTATCGGGCTGCAGTGGCTACCCAGATAGAACTTTGGCCTCGTCTGAGGAACAAGCTGCCTCAGTGGGCCGGTATCAGTTCTTTGTATATTCCTTCACGGCTTTCTTTGGAGCAATCCTCCGGAGCTGTCACGAGTTCGTACAAAAGCCGTTTCATAAGAGAAGGGACCAAAGTGGTGGATCTGACCGGCGGACTCGGCATCGACTTCATAGCCTTGATGTCCAAAGCATCCCAAGGCATATATATCGAGCGAAATGATGAAACGGCTGTTGCAGCACGGCACAACATACCGCTATTACTCAACGAAGGGAAAGATGTAAATATCCTAACAGGGGATTTCAAAGAGTATTTACCGCTGATAAAGACTTTTCACCCCGACTATATCTACGTGGATCCCGCCAGAAGGTCAGGAGCGGATAAGCGCGTCTATGCCATAGCCGACTGCGAGCCGGATCTCATCCCATTGGCTACCGAATTGCTGCCGTTCTGTAGCAGTATCTTGGCCAAACTGTCTCCTATGATCGACCTGTGGGACACGCTTCAGTCTCTTCTGCACGTACAAGAGCTGCATGTAGTGGCCGCCCACGGAGAGGTAAAAGAATTATTGGTCAGAATGTCCCTAAACGAAGCTACTATTCCTCCCGAAAAAGTACCGATCCATGCAATCAATCTTCTTTTGGAAGATACCGTAATACCTTTCATCTTTACAATGGAAGAAGAGAGAAGCATCTCGATTCCGTATACCGATTCGATCGACAAGTACGTATATGAGCCGCATACCGCGTTGCTCAAAGCAGGGGCCTTCAAGACCGTAGCCTACCGCCTTGGTTTACGTAAACTGCATCCCAACAGCCATCTATACACGTCGGAAGCATATGAATCAGCTTTCCCCGGGCGTACCTTTGTTCTGGAAGAAATTATTCCTTTTTCCACTTCCGTACTCAAACAGCTTCGTAAGGTAGTGCCACAGGCTTCCATCAGCTGTCGCAACTTTCCTCTTTCTCCGATCGAGCTGAGGCAGCGCAGCAAGATGGCAGACGGTGGGGAAAAGACACTGATGGGTACGACAATGGCAGATGGAAAAAAGGTGTTGTTATTACTTCGTAAGGCAGAG","7.00","0.00","45634","MLFDEKEILAITRWAKLYANQSPDRILLGSNDIPPEYRAAVATQIELWPRLRNKLPQWAGISSLYIPSRLSLEQSSGAVTSSYKSRFIREGTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVDPARRSGADKRVYAIADCEPDLIPLATELLPFCSSILAKLSPMIDLWDTLQSLLHVQELHVVAAHGEVKELLVRMSLNEATIPPEKVPIHAINLLLEDTVIPFIFTMEEERSISIPYTDSIDKYVYEPHTALLKAGAFKTVAYRLGLRKLHPNSHLYTSEAYESAFPGRTFVLEEIIPFSTSVLKQLRKVVPQASISCRNFPLSPIELRQRSKMADGGEKTLMGTTMADGKKVLLLLRKAE","1167102 1165882","PG0977 may be a conserved hypothetical protein.TIGR ID: PG1098","hypothetical protein","Cytoplasm","Two weak hits to hypothetical protein in gapped BLAST; e.g. residues 72-401 are 24% similar to pir||T35587 hypothetical protein of Streptomyces coelicolor, residues 71-380 are 22% similar to emb|CAA16122.1| hypothetical protein Rv3037c of Mycobacterium tuberculosis.","
noIPR
unintegrated
unintegrated
SSF53335\"[6-187]TSSF53335


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Tue Feb 6 17:08:02 MST 2001","Tue Feb 6 17:08:02 MST 2001","Tue Feb 6 17:08:02 MST 2001","Tue Feb 6 17:08:02 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540831","","","","","","1","","","PG1098" "PG0978","1168261","1167440","822","ATGTTTGAGAAGATTACCGAACAGCCTTCCCTGTACGACCGACTGGAAGAAAAGTCGACCAGAGAGATCCTCGAAGACATCAACCGCGAGGACAGGAAAGTGGCCGAAGCCGTCAGCCGGACTATTCCGATGATCGAACGACTGGTCGAACAAATCATACCACGCATGGAGCAGGGTGGGCGACTCTTCTACATGGGAGCCGGCACCAGCGGCCGCTTGGGCGTCCTGGATGCTTCGGAGATTCCTCCCACATTCGGTATGCCCCCCACATTCGTCATCGGGCTGATCGCCGGAGGGGATCGTGCCCTGCGTAATCCGGTAGAGAAAGCGGAAGACAACACCGAGCGCGGCTGGGAAGAGCTTTTGAGCCACGGAGTGAACTCCTCCGATACGGTCATCGGTATAGCGGCATCGGGGACTACACCCTATGTGATCGGAGCCTTGCGAGAAGCGCGCAGACATGGAATCCTGACGGGATGTATCTGTAGCAATATCGAATCTCCGCTGGCTGCCGAAGCGGATTGTCCCATCGAAGTGATAGTAGGTCCGGAATACGTGACAGGCAGCTCGCGGATGAAATCCGGTACGGCGCAGAAAATGATCCTGAATATGATCAGCACTTCCATAATGATTCGTCTCGGGCGGGTAAAGGGCAATCGCATGGTCAATATGCAACTCAGCAACAACAAGCTGATCGATCGGGGCACGCGCATGCTGATGAGTGAGTTCGATCTCTCCTACGAAGATGCCCGCACCCTCCTCCTTCGCTATGGATCTGTCCGTATCGCCTCCGAAAGCATGAAGCAAAAGCCTCCCAAGAAA","7.30","0.36","30293","MFEKITEQPSLYDRLEEKSTREILEDINREDRKVAEAVSRTIPMIERLVEQIIPRMEQGGRLFYMGAGTSGRLGVLDASEIPPTFGMPPTFVIGLIAGGDRALRNPVEKAEDNTERGWEELLSHGVNSSDTVIGIAASGTTPYVIGALREARRHGILTGCICSNIESPLAAEADCPIEVIVGPEYVTGSSRMKSGTAQKMILNMISTSIMIRLGRVKGNRMVNMQLSNNKLIDRGTRMLMSEFDLSYEDARTLLLRYGSVRIASESMKQKPPKK","1168261 1167440","TIGR ID: PG1099","probable glucokinase regulatory protein-related protein","Cytoplasm","This sequence is highly similar to BT0133, a homolog of eukaryotic glucokinase regulator.Numerous significant hits in gapped BLAST; e.g. residues 5-255 are 52% similar to pir||I64090 glucokinase regulator homolog of Haemophilus influenzae strain Rd KW20, residues 19-254 are 50% similar to gb|AAF93855.1| glucokinase regulatory protein-related protein of Vibrio cholerae, residues 15-260 are 48% similar to dbj|BAB07294.1| BH3575~unknown conserved protein of Bacillus halodurans, residues 13-258 are 47% similar to gb|AAF93382.1| GckR family protein of Vibrio cholerae. ","
InterPro
IPR001347
Domain
Sugar isomerase (SIS)
PF01380\"[130-205]TSIS
InterPro
IPR005486
Family
Glucokinase regulatory protein
PS01272\"[182-199]TGCKR
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.10490\"[11-247]TG3DSA:3.40.50.10490
PTHR10937\"[126-210]TPTHR10937
SSF53697\"[9-247]TSSF53697


","BeTs to 3 clades of COG2103COG name: Predicted aminotransferase, homolog of eukaryotic glucokinase regulatorFunctional Class: RThe phylogenetic pattern of COG2103 is -------ceb-h---------Number of proteins in this genome belonging to this COG is 1","***** IPB001741 (Glucokinase regulatory protein family) with a combined E-value of 2.8e-48. IPB001741B 59-98 IPB001741C 192-240***** PF01380 (SIS domain) with a combined E-value of 3.8e-06. PF01380A 68-78 PF01380B 135-155","Residues 85-184 are 41% similar to a (PROTEIN DNAJ 3' REGION) protein domain (PD033270) which is seen in Y861_SYNY3.Residues 186-258 are 47% similar to a (PROTEIN GLUCOKINASE REGULATORY REGULATOR) protein domain (PD006752) which is seen in Y861_SYNY3.Residues 5-84 are 54% similar to a (PROTEIN YBBI REGION SIMILAR) protein domain (PD009146) which is seen in YFEU_HAEIN.Residues 126-184 are 54% similar to a (PROTEIN AMINOTRANSFERASE) protein domain (PD000868) which is seen in O31420_BACSU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Feb 7 08:33:40 MST 2001","Thu Nov 20 20:52:29 2003","Wed Feb 7 08:33:40 MST 2001","Fri May 4 17:12:32 MDT 2001","Thu Nov 20 20:52:29 2003","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri May 4 17:12:32 MDT 2001","-68% similar to PDB:1NRI Crystal Structure of Hypothetical protein HI0754 from Haemophilus influenzae (E_value = 2.8E_61);-51% similar to PDB:1ZRH Crystal structure of Human heparan sulfate glucosamine 3-O-sulfotransferase 1 in complex with PAP (E_value = 2.8E_61);-75% similar to PDB:2IXS STRUCTURE OF SDAI RESTRICTION ENDONUCLEASE (E_value = 2.8E_61);","","","No significant hits to the Pfam 11.0 database","Fri May 4 17:12:32 MDT 2001","34540832","","","","","","1","","10","PG1099" "PG0979","1169105","1168257","849","ATGATTCTGATTGGAGACAGCGGTTCCACCAAGACGGATTGGTGCATAGCCAAGGAGGGAAAAAGCCTCGGACGATTCCAAACGTCAGGTATCAATCCATTTCAGCAGGATAGGAACGAAATAGACACTGCCCTGCGTTCGGAAGTCCTGCCGGCCATAGGCCAAAAAGCCTCCTCTATCCGAGCTGTATATTTCTACGGTGCAGGGTGTACACCGGCCAAAGCCCCTATGCTAAATGAAGCCTTGGACAGTATGCTGCCCCACTGCGACCGCATCGAAGTCGCCGGCGATATGCTCGGTGCAGCCCGTGCTCTCTGTGGCGATTCCGAGGGGATAGCCTGCATATTGGGTACGGGCTCCAATTCCTGTCTGTTCGATGGTCGGGAGATCAAAGCCAACGTTTCCCCACTGGGCTATATCCTCGGAGATGAAGGGAGCGGAGCCGTATTGGGACGGCTGTTCATCGGCAGCCTTCTCAAGGGGCAGATGCCGGAGGGGCTGTGCGAAGCTTTCCTGCAGGAGTATGGCCTGACGTCTGCCGATATTATCGAGAGTGTCTATCGAAAGCCTTTCCCCAATCGCTTCTTGGCCGGATTCTCCCCCTTTATCGCGCAGCATTTGGACATTCCGGCTGTATATAGCCTTGTACAGAATAGTTTCGACGACTTTCTTGTGCGCAACGTGCTCCGATACAATCGTCCTGATCTCCCCCTCCACTTCATCGGCTCTGTAGCCTTTCATTATCGGGAAGTGTTGAGTAGCGTCATCAAAAAAAGAGGCTTAACGCTCGGATCGGTACTGCAAAGTCCGATGGAGGGACTTATACAATATCACCACAACAATCATGTT","6.40","-2.64","30731","MILIGDSGSTKTDWCIAKEGKSLGRFQTSGINPFQQDRNEIDTALRSEVLPAIGQKASSIRAVYFYGAGCTPAKAPMLNEALDSMLPHCDRIEVAGDMLGAARALCGDSEGIACILGTGSNSCLFDGREIKANVSPLGYILGDEGSGAVLGRLFIGSLLKGQMPEGLCEAFLQEYGLTSADIIESVYRKPFPNRFLAGFSPFIAQHLDIPAVYSLVQNSFDDFLVRNVLRYNRPDLPLHFIGSVAFHYREVLSSVIKKRGLTLGSVLQSPMEGLIQYHHNNHV","1169105 1168257","TIGR ID: PG1100","conserved hypothetical protein","Cytoplasm","This sequence corresponds to gi:34397147 in Genbank.Its nearest neighbor in the NR database is gi:29349026 from Bacteroides thetaiotaomicron VPI-5482.","
InterPro
IPR002731
Domain
ATPase, BadF/BadG/BcrA/BcrD type
PF01869\"[4-264]TBcrAD_BadFG


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Fri Mar 4 14:41:55 2005","Fri Mar 4 14:41:55 2005","Wed Feb 7 08:41:07 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Mar 4 14:41:55 2005","-100% similar to PDB:1ZBS Crystal Structure of the Putative N-acetylglucosamine Kinase (PG1100) from Porphyromonas gingivalis, Northeast Structural Genomics Target PgR18 (E_value = 1.2E_163);-71% similar to PDB:1ZXO X-Ray structure of the hypothetical protein Q8A1P1 at the resolution 3.2A. Northeast Structural Genomics Consortium target BtR25. (E_value = 1.1E_89);","","","Residues 4 to 278 (E-value = 1.5e-05) place PG0979 in the BcrAD_BadFG family which is described as BadF/BadG/BcrA/BcrD ATPase family (PF01869)","","34540833","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Fri Mar 4 14:41:55 2005","","1","","10","PG1100" "PG0980","1170562","1169105","1458","ATGAGTCCTCTCGTAGCTATTCTGACCGTTATCGTCTATTTCGTCTTCCTTTTCGGTATTTCCTTTGTCACGGGCCGCAAAGCGGATAATGCCGGCTTCTTTGTGGGCAATCGCAAATCCCCGTGGTACATGGTGGCTTTTGCCATGATCGGCTCCGGTATATCGGGAGTAACCTTCGTATCCGTGCCGGGCATGGTGGCCGGCAGCGGATTCTCCTACCTGCAGATGGTACTGGGCTTTGTGGCCGGACAACTGATTATTGCCTTCGTCCTGATCCCTCTCTTCTACCGGATGAATCTGATGTCCATTTACGGCTACTTGCAAGAGCGGTTCGGATTCTCGTCCTACAAGACGGGGGCATGGTTTTTCTTCATCTCCAAGATGCTCGGTGCGGCTGTCCGGCTTTTTCTCGTATGCCTGACGCTCCAACTGATCGTATTCGAACCGTTCGGATGGCCTTTTATGGCCAATGTGTGCCTGACGATGCTCTTCGTCTGGCTATATACGTTCAAGGGCGGAGTAAAATCGCTGATCTGGACCGATTCGTTCAAGACCCTCTGCCTCATCGTCTCGGTCGTACTCTGCATCGTCTATATTTCTGCCGACTTGGGCGACAGATGGGGAGGGGCGACCGACCTTATCGGCGGGAGCGACTACTCCCGTATGTTTTTCTTCGATGACGTGAACGACAAACGCTATTTCTTCAAGCAGTTTCTGGCAGGCGTATTCACCGTAATAGCTATGACGGGGTTGGATCAGGACATGATGCAGCGCAATCTGAGCTGCAAGAACTACCGCGATTCGCAGAAGAACGTCCTCACCGGCGGCGTGATGCAGTTCTTCATCATAGCACTCTTCCTCATGCTCGGTACCCTGCTCTATACCTATGCCGACAGCCACGGCATCCCCCATCCGTCCAAAAGCGATGAGCTATTCCCACTCTTGGCCACGGGCAGCTATTTTCCGCCTGTTGTAGGCATCCTGTTCATATTGGGACTGGTGTCGTCGGCTTTCTCTGCAGCCGGTTCGGCCCTGACGGCTCTGACTACTTCGTTCACGCTGGACATCCTCCAAGCACACAGCCACCGAAGCGAAGAGCAATCGGCTCGTATACGCCATCGCGTGCACATCGGCATGGCTGTCGTCATGGGGCTGGTCATATACTTCTTTAATATGGTAAGCAACACGAGCGTCATCGATGCCGTCTACGTACTGGCCAGTTACACTTATGGGCCGATATTGGGACTGTTTTTCTTCGGCATCGCCACCAAAAGGGCAGTACGGGACAGATACGTCCCTCTGGCAGCCCTTGTTGCTCCGGTGCTCTGCTACATTCTCCAGAGCCATTCGGAGCAATGGTTCGGCGGCTATAAATTCAGTTACGAACTCCTCATCTTCAATGCCTTCTTTACCGCCATAGGCCTGGCATTGTTGAGCCGGAAAAAAGAAATACGATCA","9.80","11.39","54118","MSPLVAILTVIVYFVFLFGISFVTGRKADNAGFFVGNRKSPWYMVAFAMIGSGISGVTFVSVPGMVAGSGFSYLQMVLGFVAGQLIIAFVLIPLFYRMNLMSIYGYLQERFGFSSYKTGAWFFFISKMLGAAVRLFLVCLTLQLIVFEPFGWPFMANVCLTMLFVWLYTFKGGVKSLIWTDSFKTLCLIVSVVLCIVYISADLGDRWGGATDLIGGSDYSRMFFFDDVNDKRYFFKQFLAGVFTVIAMTGLDQDMMQRNLSCKNYRDSQKNVLTGGVMQFFIIALFLMLGTLLYTYADSHGIPHPSKSDELFPLLATGSYFPPVVGILFILGLVSSAFSAAGSALTALTTSFTLDILQAHSHRSEEQSARIRHRVHIGMAVVMGLVIYFFNMVSNTSVIDAVYVLASYTYGPILGLFFFGIATKRAVRDRYVPLAALVAPVLCYILQSHSEQWFGGYKFSYELLIFNAFFTAIGLALLSRKKEIRS","1170562 1169105","TIGR ID: PG1101","sodium permease-related protein","Inner membrane, Cytoplasm","Several hits in gapped BLAST to permease/symporter sequences. Residues 10-450 are 24% similar to a predicted sodium-coupled permease in Synechocystis (D90913).This sequence is similar to BT3623.","
InterPro
IPR001734
Family
Na+/solute symporter
PTHR11819\"[7-410]TNa/solut_symport
PF00474\"[33-440]TSSF
PS50283\"[3-426]TNA_SOLUT_SYMP_3
noIPR
unintegrated
unintegrated
SSF90123\"[226-422]TSSF90123


","BeTs to 10 clades of COG0591COG name: Na+/proline, Na+/panthothenate symporters and related permeasesFunctional Class: E,H,RThe phylogenetic pattern of COG0591 is A-tKyq-cEB-Huj--o--nXNumber of proteins in this genome belonging to this COG is 1","***** IPB001734 (Sodium:solute symporter family) with a combined E-value of 3.9e-34. IPB001734A 44-85 IPB001734B 87-111 IPB001734C 150-204 IPB001734D 314-357 IPB001734C 41-95","Residues 247-450 are 24% similar to a (TRANSMEMBRANE TRANSPORT PROTEIN SODIUM PERMEASE SYMPORT) protein domain (PD000991) which is seen in P74252_SYNY3.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Mon Nov 13 14:14:49 MST 2000","Mon Dec 22 11:32:11 2003","Wed Feb 7 09:20:14 MST 2001","Fri May 4 17:15:51 MDT 2001","Fri May 4 17:15:51 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Mon Nov 13 14:14:49 MST 2000","Fri May 4 17:15:51 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 33 to 440 (E-value = 3.2e-07) place PG0980 in the SSF family which is described as Sodium:solute symporter family (PF00474)","Fri May 4 17:15:51 MDT 2001","34540834","","","","","","1","","10","PG1101" "PG0981","1173730","1170956","2775","TTGGGATACGATCCGCATGTACGCGAGTGGAAACTGCCATTAAACGGGAAAGCGAGAGGAAAGTCTATAGAAGTATCATTTCCTTATTTTTACAGAGCAGATCAATCGCTAAAAAGACGAAGAATACCCATGCCACACCATCTGTTGTCATTGACTTCCCTGCTGAGGTGCAGACTTCACCACTTCTTCCTATATATTATTATAATAGTATCGGCAGGCTATTCAGCCACGGCACAAACGGTGATCAAAGGTCTTGTCCTCGCAGCGGACAATGAAGCCCCCGTATCTTATGCATCCATCTATGTCGCTGAAACAAAGAGCGGAGTAGTGGCGGACGAGAGCGGACGATTTATCCTCCGCCTCCATCCGGGACGCTACCGGCTGGCCATCCGTTCCATGGGATACACTCCTCTTGAGACAGAGTTGCTCGTGGGCGAGAAAAGCGAGGAGAAGACTTTCCGACTCAGCTCCGTCATCTATGATCTGAAAGAGGTGGAAGTGATAGGTAAACGGCCTAAAGAAGATCCTGCCTATCCCATCATGCGCGAACTCATAGCGCGCACTCCAGTTTACGAGCACATGGTAAAGAGCTATCAGGCCAAAGTCTATACCAAGGGTTCGATGCGGCTGGATAAGCTGCCTTTCTGGCTACGCTATAAGAAAGCAGATGGCATAAGTGCAAAGGATCTGGAGAAAAAACGCTTCGTCATAGAGAGCCAAGCCTCTCTGGAATTCCGGCATCCGAACAAATACAACAAGCAAGTGCGCGCGATGCGCTCTTCGATACCGGATGACCTCAAATCTGATACAACGGATTATATGCAGATTATCTCGACCAACATATATGCCAAAGAGTTCAGTCTTGATGGAATAGTAAACATGGCAAGTCCTATACGGACGGGTGTACTGGAATCGTACACCTACAAACTGGAGGGTACCAGCCGGGAAAAGGAAAGAAAAGTGTACCACATCAGCTTCAAAGGCAGAAGGGACGCCATGAGGGGCGAACTGTGGGTGATCGATAGCATCTGGTGTCTGCAGGCACTAAAATTGGAAATTAAGGCTTACGATATGATTCGGTACAAGGTCGATATAAGTCTCAATCCGCTCGAAAAGGATGTGTACCTGCCCACCACCTATGCCATCGGTATGGAGATGCAGTCGATGGGACTGAAACTGGAGTACCAGTACTTTTCGTCCTTGGTGTACGATTCGCTTGAGATCGACCGCAAATTGCTATCCACTGCCCGAAGAGCTGAGGGACTTCGCTTCCGTACGAACCGCGAAGTAAACCGCCACCTTCGGATGCTCGAATCCCGATTGGATACGCTGGGCTATCATCTGCCCGACAAGTATATGCTGCCCGATACCGAATTGCAGGCCAAGGTCCGATTCGATTCACTAGCTTTCGATCGCGACTCTTCCTACTGGGACGCTGTAGTGACGGCACCGCTTACCGATGAAGAAGCACAGAGCTATGCCAATCGGGACAGTCTGATGCAAGCTTTTGAGAAAAAGCGGCGGTTCGGTGGCGGTCGGGAAGGCGAACGTACCGGCCGTACTTCCATCCTCGGTGCTATCCTCGGCGGACATGACTATAAAATGGGAGAGGGGACTACACTCGGATTCAACGGCCTTATCCGCGGATCGCTCTATGACTACCGCTATACGGATGGCTTTTGGTTGGGACAGAGCTTTTTCTTCCGGCAGAAGTTTTCCAAAGGTGTAGACCTGACGCTGCGCCCTATACTATATTATACTACTCATAGGCGGAAGCTATACTGGGATGTCCGTGCCGATTTCCGCTACGCTCCTCTCTCGGGTGGACTACTCTCCCTATCGGCAGGCAGGCAGAGTGCAGACCTGACTGGCCCGTTTGCCAATACGGACTGGCGCATACAGACTTTCCTGACCACCTTAGTAGACGGTCGTGGTCATCTGATGCTATATGACAAGAAGTATCTGCGCTTGAGCAATCAGATAGACCTATTGCCGGGCTTGCAGCTATTCCTCTTCGCTGAAGGACGCCATAGCAGCCCTTTGGCCGAAAATCGTGTATGGGGAATTTTCAAGAAACCGATTAAAAACAAATTAATCGGCGGCATCGCATCTTCTCCCGATAGCCTGCTCTATTCGATGCCCGATCACAGAAGTCTGACGGTCGGGGGCAGCATCCGCTATAATCCTGCACCCTATTATCGTTTGGACAAGGACGGACGTAAGCGGTATGACGGGGTCGGTACACGCGCTCCGCTATTTGGGCTCACTTACCGTCAAGCCATACCGCTCGGACGAGAGCACGACAGCGACTACATCTACCTATCCGGTTCGGTACGGCAAAATCTCCGACTCAATCCGTTGCACTCGCTCTACTACCACTTCACGGTGGGCAGTTACTTTCGTCGGCATACGGTACACCTCGACGAACAGCGCTATCTCAAAGCTGACAATGCTTTGTTTCAAATAGGAGGCACGCTCCACGACAGTTTCCAAACCCTCCCTCCTTATTCTTATACGGATCAGAACTTTCTCATCCTTCAGACTCGCTGGTCTTTCCCCTCATTGATCACTAATCCGTTGGGCATCCTATTCGCTTCGTTCCAGTCCAACCTTCATCTGAATACGTATTGGGGATGCCACAAAGACCGGATGCCTTTCTTCGAAATAGGCTATTCTCGTGGTACGATCGCACAAATCGGCATCTTCTGTGGCGCATACAATTTCCATAAAGATTACGGCCTGATGCTCCGCTATACGATCAACTTTCCGACATTA","10.40","38.90","106794","LGYDPHVREWKLPLNGKARGKSIEVSFPYFYRADQSLKRRRIPMPHHLLSLTSLLRCRLHHFFLYIIIIVSAGYSATAQTVIKGLVLAADNEAPVSYASIYVAETKSGVVADESGRFILRLHPGRYRLAIRSMGYTPLETELLVGEKSEEKTFRLSSVIYDLKEVEVIGKRPKEDPAYPIMRELIARTPVYEHMVKSYQAKVYTKGSMRLDKLPFWLRYKKADGISAKDLEKKRFVIESQASLEFRHPNKYNKQVRAMRSSIPDDLKSDTTDYMQIISTNIYAKEFSLDGIVNMASPIRTGVLESYTYKLEGTSREKERKVYHISFKGRRDAMRGELWVIDSIWCLQALKLEIKAYDMIRYKVDISLNPLEKDVYLPTTYAIGMEMQSMGLKLEYQYFSSLVYDSLEIDRKLLSTARRAEGLRFRTNREVNRHLRMLESRLDTLGYHLPDKYMLPDTELQAKVRFDSLAFDRDSSYWDAVVTAPLTDEEAQSYANRDSLMQAFEKKRRFGGGREGERTGRTSILGAILGGHDYKMGEGTTLGFNGLIRGSLYDYRYTDGFWLGQSFFFRQKFSKGVDLTLRPILYYTTHRRKLYWDVRADFRYAPLSGGLLSLSAGRQSADLTGPFANTDWRIQTFLTTLVDGRGHLMLYDKKYLRLSNQIDLLPGLQLFLFAEGRHSSPLAENRVWGIFKKPIKNKLIGGIASSPDSLLYSMPDHRSLTVGGSIRYNPAPYYRLDKDGRKRYDGVGTRAPLFGLTYRQAIPLGREHDSDYIYLSGSVRQNLRLNPLHSLYYHFTVGSYFRRHTVHLDEQRYLKADNALFQIGGTLHDSFQTLPPYSYTDQNFLILQTRWSFPSLITNPLGILFASFQSNLHLNTYWGCHKDRMPFFEIGYSRGTIAQIGIFCGAYNFHKDYGLMLRYTINFPTL","1173730 1170956","See PG0015.TIGR ID: PG1102","conserved hypothetical protein","Outer membrane, Inner membrane, Cytoplasm","This sequence corresponds to gi:34397149 in Genbank.Its nearest neighbor in the NR database is gi:29349289 from Bacteroides thetaiotaomicron VPI-5482.","
noIPR
unintegrated
unintegrated
G3DSA:2.60.40.1120\"[81-185]Tno description
tmhmm\"[62-82]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Fri Mar 4 14:45:15 2005","Fri Mar 4 14:45:15 2005","Fri Mar 4 14:45:15 2005","Mon Nov 13 13:02:16 MST 2000","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 251-921 are 30% similar to residues 134-747 of PG0015, a hypothetical protein.","Mon Nov 13 13:06:14 MST 2000","Fri Mar 4 14:45:15 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540835","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293Chen T, Hosogi Y, Nishikawa K, Abbey K, Fleischmann RD, Walling J, Duncan MJ.Comparative whole-genome analysis of virulent and avirulent strains of Porphyromonas gingivalis.J Bacteriol. 2004 Aug;186(16):5473-9.PMID: 15292149","","Fri Mar 4 14:45:15 2005","","1","","10","PG1102" "PG0982","1173748","1175049","1302","ATGAAACAAATACCCTTGGCCGAGAGAATGCGTCCAAAAACGCTGGCCGACTATGTGGGGCAGCAGCATCTGATCGGATCGGGGGCTGTGCTCCGGCAGATGATCGAGCAGGGACAGACGCCATCCATGATCCTGTGGGGGCCTCCCGGAGTAGGCAAGACTACGCTGGCCGAAATCATCGCTCATGAAGTGGATGCACCTTTCTATACATTGAGTGCGGTTAGCTCCGGTGTGAAGGAAGTGCGGGAAGTAATAGCCGACATCGAATCCAATCGTGGCAATCTGTTCGACAAAGGAGGACGCGCCATCCTCTTCATCGACGAGATACACCGTTTCAGCAAGAGTCAGCAGGATTCACTTCTGGCAGCCGTAGAGCGAGGAATAGTGACGCTGATCGGTGCCACGACCGAAAATCCGAGTTTCGAAGTAATACGTCCGCTCCTATCGCGCTGTCAGGTCTATGTGCTCAAACCCCAAAGTGATGAGGATCTGCTGCTACTGGCACACAGGGCTATCGATCGGGACGAACTGCTGGCTGCCAAGCATCCTGTACTGGAGGAGACGGAAGCTCTGCTTCTCTATGCCGGAGGCGATGCACGAAAGCTGCTGAACATCCTCGACCTTCTGGCCACAAGCGAAGTGGAAGACCGGCTCGTCATTACCAACGAAAAGATACGTCAGCGCTTGCAAGAAAACCCCGCTGCTTTCGACAAGGGAGGCGAACTCCACTATGATATAGCATCCGCCTTTATCAAAAGTATTCGGGGCAGTGATCCCGACGCGGCTATTTACTGGCTGGCGCGCCTTATAGATGGTGGGGAGGAACCCTCATTCATCGCTCGCAGGCTGATCATATCGGCTTCGGAAGACATCGGCCTGGCTAATCCGAATGCCATGCTCATCGCCATGGCCTGTGCCGAGGCTTTAGACCGAATCGGCTGGCCTGAAGGCCGTATTCCATTGGCCGAGGCTACCATTTATTTGGCTACTTCGGAGAAGAGCAATTCAGCTTATTTGGCCATCGACTCCGCTCTCGAATATGTCCGTCAATCAGGTAATCTTCCCGTGCCCCTACACTTGCGTAATGCCCCTACCCGTCTGATGGCCGACCTTGACTATGGCAAGGGTTACAAATACTCGCATGATTTTCCGGAACACTTCGTCTCACAGCAATATCTGCCCGACAAAGCTGCTAACACCTCTTTCTGGACACCTCAAATGCACACAGTGCATGAAGCCAAGCTGGGAGAACGGATGAAGCGATGGTGGAAGAGGGAAAAATCCCAAAAGGATACAGCAGAA","5.70","-8.40","48292","MKQIPLAERMRPKTLADYVGQQHLIGSGAVLRQMIEQGQTPSMILWGPPGVGKTTLAEIIAHEVDAPFYTLSAVSSGVKEVREVIADIESNRGNLFDKGGRAILFIDEIHRFSKSQQDSLLAAVERGIVTLIGATTENPSFEVIRPLLSRCQVYVLKPQSDEDLLLLAHRAIDRDELLAAKHPVLEETEALLLYAGGDARKLLNILDLLATSEVEDRLVITNEKIRQRLQENPAAFDKGGELHYDIASAFIKSIRGSDPDAAIYWLARLIDGGEEPSFIARRLIISASEDIGLANPNAMLIAMACAEALDRIGWPEGRIPLAEATIYLATSEKSNSAYLAIDSALEYVRQSGNLPVPLHLRNAPTRLMADLDYGKGYKYSHDFPEHFVSQQYLPDKAANTSFWTPQMHTVHEAKLGERMKRWWKREKSQKDTAE","1173691 1175049","TIGR ID: PG1103","ATPase","Cytoplasm","Numerous hits in gapped BLAST to conserved hypothetical proteins. Residues 4-434 are 46% similar to YCAJ_COXBU.This sequence is similar to BT1205.","
InterPro
IPR000641
Family
CbxX/CfqX
PR00819\"[42-57]T\"[91-110]TCBXCFQXSUPER
InterPro
IPR002464
Family
ATP-dependent helicase, DEAH-box
PS00690\"[102-111]?DEAH_ATP_HELICASE
InterPro
IPR003593
Domain
AAA+ ATPase, core
SM00382\"[39-159]TAAA
InterPro
IPR003959
Domain
AAA ATPase, core
PF00004\"[42-212]TAAA
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[4-159]TG3DSA:3.40.50.300
PTHR13779\"[14-431]TPTHR13779
PTHR13779:SF1\"[14-431]TPTHR13779:SF1
SSF52540\"[4-328]TSSF52540


","BeTs to 6 clades of COG2256COG name: Uncharacterized ATPase related to the helicase subunit of the Holliday junction resolvaseFunctional Class: LThe phylogenetic pattern of COG2256 is ----y-v-ebrhuj-------Number of proteins in this genome belonging to this COG is 1","***** IPB001939 (AAA-protein (ATPases associated with various cellular activities)) with a combined E-value of 1.4e-10. IPB001939B 40-61 IPB001939C 83-116","Residues 143-291 are 44% similar to a (PROTEIN SUBUNIT REPLICATION DNA ATP-BINDING FACTOR C) protein domain (PD001148) which is seen in O69490_MYCLE.Residues 72-139 are 58% similar to a (PROTEIN ATP-BINDING INTERGENIC REGION) protein domain (PD186398) which is seen in YCAJ_ECOLI.Residues 6-61 are 66% similar to a (PROTEIN DNA ATP-BINDING SUBUNIT REPLICATION FACTOR C) protein domain (PD000893) which is seen in YCAJ_ECOLI.Residues 292-354 are 53% similar to a (PROTEIN ATP-BINDING INTERGENIC REGION) protein domain (PD006874) which is seen in O25670_HELPY.Residues 356-424 are 42% similar to a (PROTEIN ATP-BINDING INTERGENIC REGION) protein domain (PD150113) which is seen in YCAJ_COXBU.Residues 7-140 are 47% similar to a (PROTEIN ATP-BINDING PROTEASE SUBUNIT REGULATORY HOMOLOG) protein domain (PD000092) which is seen in O48696_ARATH.","","Wed Jun 13 14:44:20 MDT 2001","","Wed Jun 13 14:44:20 MDT 2001","Wed Jun 13 14:44:20 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Jun 13 14:44:20 MDT 2001","Wed Jun 13 14:44:20 MDT 2001","","","Thu Dec 4 11:50:41 2003","Thu Dec 4 11:50:41 2003","Fri May 4 17:24:07 MDT 2001","Tue Jun 19 09:01:04 MDT 2001","Tue Jun 19 09:01:04 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","None.","Mon Nov 13 13:00:27 MST 2000","Fri May 4 17:24:07 MDT 2001","-48% similar to PDB:1IQP Crystal Structure of the Clamp Loader Small Subunit from Pyrococcus furiosus (E_value = 5.3E_18);-48% similar to PDB:1SXJ Crystal Structure of the Eukaryotic Clamp Loader (Replication Factor C, RFC) Bound to the DNA Sliding Clamp (Proliferating Cell Nuclear Antigen, PCNA) (E_value = 1.4E_15);-52% similar to PDB:1HQC STRUCTURE OF RUVB FROM THERMUS THERMOPHILUS HB8 (E_value = 6.0E_14);-52% similar to PDB:1IXR RuvA-RuvB complex (E_value = 6.0E_14);-52% similar to PDB:1IXS Structure of RuvB complexed with RuvA domain III (E_value = 6.0E_14);","","","Residues 42 to 212 (E-value = 1.2e-21) place PG0982 in the AAA family which is described as ATPase family associated with various cellular activities (AAA) (PF00004)","Tue Jun 19 09:01:04 MDT 2001","34540836","","","","","","1","","10","PG1103" "PG0983","1175078","1175842","765","ATGCCGACAGATATTTTCTCCTTCAAACAATTCGACATCGACCAGACAGGTTGTGCCATGCGCGTGGGTACCGACGGCGTCCTGCTGGGAGCATGGGCCGGAGAGGATGCAGCCGGAAGTATTCCGCAGCATTGCCTGGACATAGGTACGGGCACAGGGCTGATTGCCTTAATGTTGGCACAGCGATTCCCACAGGCCCGGGTGCAGGGAATAGAAATAGATCCTATCGCTGCCGAATGTGCTCGCGCAAACGCCGCTGCCTCTCCTTTTTCCGATCGAATAGTGATCGCTTCGGGAGACATTTTGGATTCATCGCTCGAAAGCCTTATCGGAAATCAACGTTTCGATCTGATCGTCTCGAATCCGCCTTTCTTCAAGTCTTCCATGCATGCCCCCGACAGACAGCGCACCATGGCACGACATGAAGAAACCCTGCCGTTGGAAAAACTGATATGCCGTGCCTCCGAATTACTCTCTCCACAAGGGCGATTGGCACTCATTACGCCTCGCGACCGGCTGAAGGATTTACGTCTGTATGCAGCTACCTATCGTTTGGTTTCATCTCGCCTGACGGAAGTGCGTACCCTACCCCATAAAGAACCTAAACGCCTCCTAAGCGAATGGCGACCTGCCGATACTGCTATCGACCGATCGCCATTCACCGATACCCTCATCATACATCCTGCCACAGGCTACTATTCACCTGAGTACGTGCGTCTGACAGAGCCTTTCTATACGACTTCTTTCCGCATCCTCGCTGTAGGA","6.70","-0.98","28201","MPTDIFSFKQFDIDQTGCAMRVGTDGVLLGAWAGEDAAGSIPQHCLDIGTGTGLIALMLAQRFPQARVQGIEIDPIAAECARANAAASPFSDRIVIASGDILDSSLESLIGNQRFDLIVSNPPFFKSSMHAPDRQRTMARHEETLPLEKLICRASELLSPQGRLALITPRDRLKDLRLYAATYRLVSSRLTEVRTLPHKEPKRLLSEWRPADTAIDRSPFTDTLIIHPATGYYSPEYVRLTEPFYTTSFRILAVG","1175078 1175842","TIGR ID: PG1104","probable methylase","Cytoplasm","Several hits in gapped BLAST to hypothetical proteins that appear to be methylases. Residues 6-245 are 36% similar to YFIC_HAEIN.","
InterPro
IPR002052
Domain
N-6 Adenine-specific DNA methylase
PS00092\"[118-124]?N6_MTASE
InterPro
IPR002296
Family
N6 adenine-specific DNA methyltransferase, N12 class
PR00507\"[45-59]T\"[115-127]T\"[145-169]TN12N6MTFRASE
InterPro
IPR013216
Domain
Methyltransferase type 11
PF08241\"[46-121]TMethyltransf_11
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.150\"[42-185]TG3DSA:3.40.50.150
PTHR18895\"[23-235]TPTHR18895
PTHR18895:SF4\"[23-235]TPTHR18895:SF4
SSF53335\"[6-203]TSSF53335


","BeTs to 14 clades of COG0500COG name: SAM-dependent methyltransferasesFunctional Class: RThe phylogenetic pattern of COG0500 is AMTKYQVCEBRHUJgPOLINXNumber of proteins in this genome belonging to this COG is 7","No significant hit to the Blocks database.","Residues 11-140 are 42% similar to a (METHYLTRANSFERASE PROTEIN TRANSFERASE) protein domain (PD002215) which is seen in YFIC_HAEIN.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Mon Nov 13 12:55:35 MST 2000","Mon Nov 13 12:55:35 MST 2000","Fri May 4 17:27:45 MDT 2001","","Fri May 4 17:27:45 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","None","Mon Nov 13 12:55:35 MST 2000","Fri May 4 17:27:45 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Fri May 4 17:27:45 MDT 2001","34540837","","","","","","1","","10","PG1104" "PG0984","1177266","1175812","1455","ATGTTGAAGCAAACCCTTGCTCAAAGGCAGCAACAAAATCTCTCTGTACAACAGATCCAGCAAATCAAACTCTTGGAGCTTCCGGCCATTGAGTTAGAAGAGAGGATACAGAAAGAACTGGAGGCCAACCCTGCTTTGGAAGAAGGAGCGTACGATGAGGAGGTGGCCGGCAGTGCGGATGGAACCGAAGACAATCTTATGGGGGACGACACCTCCGACCTCTCTTTGGGTGATTATCGTACCGAGGAAGATATTCCTGAATACAAATTGCGTGAAATACAGGATCGTAACAGCCGACGAGAAGAAATACCTTTTTCTGCAGCTGTACCTTCGATCAACGATCGCTTGGTCGAACAGTTGAAGTTCCTGCCTCTGACGGATCGACAGCAACAGCTTGCTCCCTATATCATTGGTAACATAGAAGAAGATGGCTACCTGCATCGTGATTTGGAGGAGATTCTGGACGATCTCGCTTTCCGTGCCGGTATCGAGGCGGACAAAAAGGAAGTAGAAGAAGTGATAGGATTGGTACAAAGTCTCGATCCCCCCGGTATCTGTGCCAGAGACCTCAAAGAGTGTTTGCTGCTCCAATTGGAACGATTGCCGGATACGACAGCTCGGCAGACAGCCCTCCATATTCTTACGAACCATTATGACGACTTTGTCTCCAAACGGTTCGAGCAGTTGCAGGAGGGAGCATCCCTTTCCGATTCGGAAATGAAGGAGGCCTTCGAACTGATCATGCAGCTCAATCCCAAACCCGCTAACGGATGGGGAGATGACGCCGAAGCAGCCATGAACAGGGTACATCCCGATTTCATCGTCGAGCGCATGGGGGACGATCTGGTCGTGTCGCTTACTCGTGGTCGTGATATTCAGCCCTTGCGCGTCAGTCCGGTCTATCAGGAGATGATGCAGGATTATCAAAGCTCTGCTAAAAACCGCTCACGCGAACGCAAACAAACACTTCTTTTCGTCAAGCAGAAAGTGGATCAAGCTCAATGGTTCATCGAAGCCCTTCGTCAGCGACGGGAAACGCTACAGCGGACGATGGAGGCCATAGTACGGCTACAGGATGCTTACTTCCGAAGTGGAGAACTTGCCGATCTGAAGCCTATGATTCTGAAAGATGTGGCTGATCCGACGGGTTATGATGTCAGTACGATCTCTCGGGTGAGCAATAGCAAATATGTACAGACCGACTTCGGAATCTTCTCGCTGAAGCACTTTTTCAGTGATGGCACTGTCAACGATAAGGGAGAGGAAGTGTCCACACGTGAGGTCAAACGAGTGCTTGCCGAAGCCATCGACTCCGAGGATAAGAGATCTCCCCTGAATGATACCGAGTTGGCTGATGTTTTGGCCGAAAACGGTTATCGACTGGCTCGTCGTACCGTTGCCAAGTATCGGGAGCAGCTCGGTTATCCTACAGCGAGGATGCGGAAAGAAGTCGTA","4.60","-27.80","55533","MLKQTLAQRQQQNLSVQQIQQIKLLELPAIELEERIQKELEANPALEEGAYDEEVAGSADGTEDNLMGDDTSDLSLGDYRTEEDIPEYKLREIQDRNSRREEIPFSAAVPSINDRLVEQLKFLPLTDRQQQLAPYIIGNIEEDGYLHRDLEEILDDLAFRAGIEADKKEVEEVIGLVQSLDPPGICARDLKECLLLQLERLPDTTARQTALHILTNHYDDFVSKRFEQLQEGASLSDSEMKEAFELIMQLNPKPANGWGDDAEAAMNRVHPDFIVERMGDDLVVSLTRGRDIQPLRVSPVYQEMMQDYQSSAKNRSRERKQTLLFVKQKVDQAQWFIEALRQRRETLQRTMEAIVRLQDAYFRSGELADLKPMILKDVADPTGYDVSTISRVSNSKYVQTDFGIFSLKHFFSDGTVNDKGEEVSTREVKRVLAEAIDSEDKRSPLNDTELADVLAENGYRLARRTVAKYREQLGYPTARMRKEVV","RNA polymerase sigma-54 factor (major sigmafactor)","From Prosite PDOC00563: Sigma factors are bacterial transcriptioninitiation factors that promote the attachment ofthe core RNA polymerase to specific initiationsites and are then released. They alter thespecificity of promoter recognition. Most bacteriaexpress a multiplicity of sigma factors. Two ofthese factors, sigma-70 (gene rpoD), generallyknown as the major or primary sigma factor, andsigma-54 (gene rpoN or ntrA) direct thetranscription of a wide variety of genes. Theother sigma factors, known as alternative sigmafactors, are required for the transcription ofspecific subsets of genes. TIGR ID: PG1105","RNA polymerase sigma-54 factor (major sigma factor)","Cytoplasm","This sequence is similar to CT609 and BT2521.Numerous significant hits to RNA polymerase sigma-54 factor protein in gapped BLAST; e.g. residues 22-484 are 29% similar to pir||B48362 transcription initiation factor sigma 54 of Alcaligenes eutrophus, residues 22-485 are 32% similar to gb|AAG07850.1|AE004860_6 RNA polymerase sigma-54 factor of Pseudomonas aeruginosa, residues 22-485 are 32% similar to gb|AAA19793.1| rpoN of Pseudomonas aeruginosa.","
InterPro
IPR000394
Family
RNA polymerase sigma factor 54
PR00045\"[181-198]T\"[384-396]T\"[400-411]T\"[458-476]TSIGMA54FCT
PF00309\"[2-49]TSigma54_AID
TIGR02395\"[8-482]TrpoN_sigma
PS00718\"[463-470]TSIGMA54_2
PS50044\"[335-462]TSIGMA54_3
InterPro
IPR007046
Domain
RNA polymerase sigma factor 54, core-binding
PF04963\"[100-256]TSigma54_CBD
InterPro
IPR007634
Domain
RNA polymerase sigma factor 54, DNA-binding
PF04552\"[325-483]TSigma54_DBD


","BeTs to 7 clades of COG1508COG name: Sigma-54 (RpoN) and related alternative sigma subunutsFunctional Class: KThe phylogenetic pattern of COG1508 is -----q--eb--uj--olin-Number of proteins in this genome belonging to this COG is 1","***** IPB000394 (Sigma-54 factor family) with a combined E-value of 1.2e-86. IPB000394A 10-47 IPB000394B 111-152 IPB000394C 173-199 IPB000394D 246-255 IPB000394F 335-370 IPB000394G 374-412 IPB000394H 445-483","Residues 22-482 are 29% similar to a (RNA POLYMERASE FACTOR SIGMA-54) protein domain (PD002035) which is seen in RP54_ALCEU.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","Wed Feb 7 08:57:20 MST 2001","Wed Dec 17 11:08:33 2003","Wed Mar 14 15:47:08 MST 2001","Wed Dec 17 11:08:33 2003","Wed Feb 7 08:57:20 MST 2001","Thu Feb 22 18:49:44 MST 2001","Thu Feb 22 18:49:44 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 22 18:49:44 MST 2001","-72% similar to PDB:2AHQ Solution Structure of the C-terminal RpoN Domain of Sigma-54 from Aquifex aeolicus (E_value = 1.5E_13);-72% similar to PDB:2BJC NMR STRUCTURE OF A PROTEIN-DNA COMPLEX OF AN ALTERED SPECIFICITY MUTANT OF THE LAC REPRESSOR HEADPIECE THAT MIMICS THE GAL REPRESSOR (E_value = 1.5E_13);-56% similar to PDB:1LI5 Crystal Structure of Cysteinyl-tRNA Synthetase (E_value = 1.5E_13);-56% similar to PDB:1LI7 Crystal Structure of Cysteinyl-tRNA Synthetase with Cysteine Substrate Bound (E_value = 1.5E_13);-56% similar to PDB:1U0B Crystal structure of cysteinyl-tRNA synthetase binary complex with tRNACys (E_value = 1.5E_13);","","","Residues 2 to 49 (E-value = 8.3e-05) place PG0984 in the Sigma54_AID family which is described as Sigma-54 factor, Activator interacting domain (AID) (PF00309)Residues 100 to 302 (E-value = 3.5e-33) place PG0984 in the Sigma54_CBD family which is described as Sigma-54 factor, core binding domain (PF04963)Residues 325 to 483 (E-value = 1.2e-54) place PG0984 in the Sigma54_DBD family which is described as Sigma-54, DNA binding domain (PF04552)","Wed Dec 17 11:08:33 2003","34540838","","","","","","1","","10","PG1105" "PG0985","1178522","1177263","1260","ATGGTGACTACCGACAGCCGCCAAACACCTTCCGACAGTATTTTCTTCGCTCTCAAGGGCGAGCTGTTCGATGGCAATCGGTTTGCCTCCTCTGCCTTGGAGAAAGGATGCGCCTTGGCTGTGGTGGACGATCCTTCAGTCGTTCGTGACGAACGCTATCTCCTTGTGGACGATGTGCTGACAGCTCTCCAGCAGCTGGCTGCTTTTCATCGCAAGAGTCTCGGCACACCGGTTATAGGTATCACGGGGACGAATGGCAAAACCACGACAAAAGAGCTGATGGCTGCTGTCCTTTCCACTACTTATCCTGTACTCTATACGGAGGGCAATCTCAATAACCATATAGGAGTGCCTTTGACTTTGTTGAGGCTCAAAGCCGAACACCGGATAGCTATTATCGAGATGGGAGCCAATAAGCCTGGAGACATCGCCGAGCTGACACGTATAGCTCGTCCTAACTATGGACTGATTACCAATATCGGCCGGGCACATTTACAGGGCTTCGGCTCTCTGGAAGGGGTAAGGCGTACCAAGGGAGAGCTTTATGATTTCATTCGAGCAGAGGGGGGTATCCTCTTTCTGAATTTCGATGATGATACCCTCATCGATATGTCGCAGGGGCTGCAATCGGTCTCTTACGGTACCTCGGCAGATGCCACGGTTCGAGGACGAATAGTTGCAAACAACACGCCTTATCTTTGTCTCGATTTATTCGACTCATCGAACGAACAGCGGGTTTGTACCAATCTTGTGGGCGATTACAATCTGCCGAACGCTTTGGCTGCCATAACGGCAGGACGCTTTTTCGATGTCCCCGATGAAGCCATCGTATCGGCTCTTGCTACTTACAAACCGAGTAATAATCGGTCGCAATGGATCGAGACGGAGCGAGGCAATTCCCTGATTGTGGATGCCTATAATGCCAATCCGGTGAGCATGCGCGTTGCACTCGACAATTTCGATTCCCTGCATACCGATAAGCCTCTTGTGCTTATCCTCGGCGACATGAACGAACTGGGCGCGGAGAGCAAGCGTGAGCATATGGCTCTTCTCGAACGTATAAATACCGGCCGCTACCGGCAAATATTGCTATGCGGGCCTTGCTTCACGGCTTTGGCAGACAGCTTTCCCGGTGGTGCAACGGGATTTGCTGACAATGCTGTGCTCGAAGAGTATTTGAAAGCTCATTCCATTCATGATTCCCTCATCTTGCTCAAAGGATCGCACGGCATCCACCTCGAAAAGATAATTCCTCTATGT","5.30","-9.80","45734","MVTTDSRQTPSDSIFFALKGELFDGNRFASSALEKGCALAVVDDPSVVRDERYLLVDDVLTALQQLAAFHRKSLGTPVIGITGTNGKTTTKELMAAVLSTTYPVLYTEGNLNNHIGVPLTLLRLKAEHRIAIIEMGANKPGDIAELTRIARPNYGLITNIGRAHLQGFGSLEGVRRTKGELYDFIRAEGGILFLNFDDDTLIDMSQGLQSVSYGTSADATVRGRIVANNTPYLCLDLFDSSNEQRVCTNLVGDYNLPNALAAITAGRFFDVPDEAIVSALATYKPSNNRSQWIETERGNSLIVDAYNANPVSMRVALDNFDSLHTDKPLVLILGDMNELGAESKREHMALLERINTGRYRQILLCGPCFTALADSFPGGATGFADNAVLEEYLKAHSIHDSLILLKGSHGIHLEKIIPLC","1178669 1177263","TIGR ID: PG1106","UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminoligase","Cytoplasm","Numerous hits in gapped BLAST to UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMYL-26-DIAMINOLIGASE (EC 6.3.2.15) sequences. Residues 51-466 are 35% similar to residues 30-448 of MURF_BACSU.This sequence is similar to BT3644.","
InterPro
IPR000713
Domain
Cytoplasmic peptidoglycan synthetase, N-terminal
PF01225\"[1-71]TMur_ligase
InterPro
IPR004101
Domain
Cytoplasmic peptidoglycan synthetases, C-terminal
PF02875\"[286-374]TMur_ligase_C
InterPro
IPR005863
Family
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanyl ligase
PTHR23135:SF3\"[81-411]TMurF
TIGR01143\"[4-420]TmurF
InterPro
IPR012237
Family
UDP-N-acetylmuramate-alanine ligase
PIRSF001562\"[1-419]TUDP-NAcM_Alig
InterPro
IPR013221
Domain
Mur ligase, middle region
PF08245\"[79-266]TMur_ligase_M
noIPR
unintegrated
unintegrated
G3DSA:3.40.1190.10\"[57-284]TG3DSA:3.40.1190.10
G3DSA:3.40.1390.10\"[2-56]TG3DSA:3.40.1390.10
G3DSA:3.90.190.20\"[285-420]TG3DSA:3.90.190.20
PTHR23135\"[81-411]TPTHR23135
SSF53244\"[286-420]TSSF53244
SSF53623\"[75-285]TSSF53623
SSF63418\"[2-73]TSSF63418


","BeTs to 11 clades of COG0770COG name: UDP-N-acetylmuramyl pentapeptide synthaseFunctional Class: MThe phylogenetic pattern of COG0770 is -mt--qvcebrhuj--olinxNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 65-197 are 44% similar to a (LIGASE SYNTHETASE PEPTIDOGLYCAN SYNTHESIS CELL ENZYME) protein domain (PD001083) which is seen in MURF_ECOLI.Residues 250-323 are 40% similar to a (LIGASE SYNTHETASE PEPTIDOGLYCAN SYNTHESIS CELL ENZYME) protein domain (PD001216) which is seen in MURF_BACSU.","","Wed Jun 13 14:37:27 MDT 2001","","Wed Jun 13 14:37:27 MDT 2001","Wed Jun 13 14:37:27 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Jun 13 14:37:27 MDT 2001","Wed Jun 13 14:37:27 MDT 2001","","Wed Jun 13 14:42:31 MDT 2001","Fri May 4 17:31:34 MDT 2001","Mon Dec 22 11:35:44 2003","Fri May 4 17:31:34 MDT 2001","Mon Nov 13 12:51:15 MST 2000","Tue Jun 19 09:07:00 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 4-416 are 28% similar to PG0976, a predicted alanine racemase. Residues 2-334 are 26% similar to PG0518, a predicted N-acetylymuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase.","Wed Jun 13 14:41:22 MDT 2001","","-48% similar to PDB:1GG4 CRYSTAL STRUCTURE OF ESCHERICHIA COLI UDPMURNAC-TRIPEPTIDE D-ALANYL-D-ALANINE-ADDING ENZYME (MURF) AT 2.3 ANGSTROM RESOLUTION (E_value = 6.2E_48);-48% similar to PDB:2AM1 sp protein ligand 1 (E_value = 4.0E_39);-48% similar to PDB:2AM2 sp protein ligand 2 (E_value = 4.0E_39);","","","Residues 11 to 277 (E-value = 3.6e-48) place PG0985 in the Mur_ligase family which is described as Mur ligase family, catalytic domain (PF01225)","Tue Jun 19 09:07:00 MDT 2001","34540839","","","","","","1","","10","PG1106" "PG0986","1178903","1180309","1407","TTGACCAGCTTTATTTCTGTATATTTAAAAATAAAATATTACATTTGCATATATAAAGGAAATCTCCTCGTAAAAAGTATTTTATTGGAATCTTCGTGTGTTATTTTAATTAAATATAGTGCACAATATCCTAATTTAAGCAATAGTATGATTAAGATGAATAAAACTATTTCGGATGTTGATTTTGATGATGAACAAGAAATCAAACTCCCTTTGTCTAATAGACAATCAATAGCAATTCTATTAGGTGCAGGTTTTTCAGCCCCTAAAGGTTATCCGATTGGCAATGATATAAACAAAAAAATACAAAACTTTGATGATAGTAATATTGATTTTTCTCCTTCTGGCATGTTGGCTATTTCAAAAGATGGACATAAACCTCTTTTTCAAATTGAAGGAGTGCGCAATATCCATCAAAAATACTTTATCTTTTGTAAACGCCTTATAAATGAATATACAAAAGCGCATAGCAATCAATTTGACTATGAACAATTTTATGATTTCATAAAGAGTGACGAAGCAAAAGATAACCGTTATCGACTTTTATGTCAAGATTTAATAAATAAGTCTGATGACTATGACAACTATCTTTTCAATGTTGTGCATATTTACAACCAAATGGTTTTGTATTTATTGAAAGATAAAGAAGGAAAGAGTTATTATGACGGTGAACCTTTCAAAGTAAATTGTGCAGATGCCTATAATGAATTTCTTTTATATCTATCCCAGCAAAGTAAGGAATGTATCATAAACATACATACATTAAACCATGATTTACTTATTGAATCTTTTAACCAAACAAGTAATATAAATGGTAATATATCAGATGGGTTTGATGAATACGGGTCTGAGTATTATGGCATACTCGAACATGACCATAGAAACTACAATTGTCGATTAGAAAGATATACAGGTAGGTACAATACACCGATAAGACTATATAAACTTCATGGAAGTATTGACTATGTACCTTTCTATCGAAGAGATAAAAATGGTTTTATGAAACCAGAGAAATATGTCAAAATAAAATGGGGAATAGGAGCGAGCAATATTATCAAAGGTAGAAAATCCAAATATGGTTATGATGCCTCACCATTTGAATATCATGCAGATTTTCTGACAGGTACCACATCAAAGATTAAAAGGTATGATGAAACCCTGCTTTTCAAGAAGCTTTTTAAGAAATTCAGAAATAACTTATCAAAAGCAAACTCCTTGATTATCATTGGATATGGTTGTAAAGATAAAGGAATAAATGAAATGATAAAGGACAATTTCGATTACAAAAATAAACCTTCATTCATTATCGACAAGTATGCAGGTGCCTCCGTTGAAACATTCGCTCAAAAAATTAATGCTAAAATTATTAAGGAATCTATAGAGAGATTAGATAAAACATGGTTTGTT","9.10","11.05","54733","LTSFISVYLKIKYYICIYKGNLLVKSILLESSCVILIKYSAQYPNLSNSMIKMNKTISDVDFDDEQEIKLPLSNRQSIAILLGAGFSAPKGYPIGNDINKKIQNFDDSNIDFSPSGMLAISKDGHKPLFQIEGVRNIHQKYFIFCKRLINEYTKAHSNQFDYEQFYDFIKSDEAKDNRYRLLCQDLINKSDDYDNYLFNVVHIYNQMVLYLLKDKEGKSYYDGEPFKVNCADAYNEFLLYLSQQSKECIINIHTLNHDLLIESFNQTSNINGNISDGFDEYGSEYYGILEHDHRNYNCRLERYTGRYNTPIRLYKLHGSIDYVPFYRRDKNGFMKPEKYVKIKWGIGASNIIKGRKSKYGYDASPFEYHADFLTGTTSKIKRYDETLLFKKLFKKFRNNLSKANSLIIIGYGCKDKGINEMIKDNFDYKNKPSFIIDKYAGASVETFAQKINAKIIKESIERLDKTWFV","1178903 1180309","TIGR ID: PG1107","hypothetical protein","Outer membrane, Cytoplasm","This sequence corresponds to gi:34397154 in Genbank.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Apr 4 18:03:49 MDT 2001","Fri Mar 4 14:48:19 2005","Mon Nov 13 10:14:21 MST 2000","Mon Nov 13 10:24:40 MST 2000","Mon Nov 13 10:24:40 MST 2000","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Mon Nov 13 10:14:21 MST 2000","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Apr 4 18:03:49 MDT 2001","34540840","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293Chen T, Hosogi Y, Nishikawa K, Abbey K, Fleischmann RD, Walling J, Duncan MJ.Comparative whole-genome analysis of virulent and avirulent strains of Porphyromonas gingivalis.J Bacteriol. 2004 Aug;186(16):5473-9.PMID: 15292149","","Fri Mar 4 14:48:19 2005","","1","","10","PG1107" "PG0986.1","1180797","1180381","417","ATGGAATTGAACTTTATATTTAAGTCAAGTGATCATCTAAGATATGAAAATGGTGTTCATGTAGCGGGTCCTCATGGCGGAGCTAATCGTGTTGTGAAAGTAGAGCCGAACATAAATGGGTGCAGTGGCTATAACATACAAGGAGGTGATGGTTATATCGTTACCATCTATAATTTGGATGGCATGCACCCAGTTTGGCAAAACAATGTGCAGATGTCTCCCAAGCCAATGCGAATTGTCAGCCAATCAGTAGATAAGATTGTTTTAAGGGGATATCCTGTTCAGGCAATGTCGCCTTTTGGTTGGATAGATTTCAATGGGGAAGATTACGGACTGACCATTTGTATTCAAGATGGAGAAGTGGACAAATGTGTGCTACACTTGCACGATAGAAAAATTGACCTTGAATATTTGAAA","","","15619","MELNFIFKSSDHLRYENGVHVAGPHGGANRVVKVEPNINGCSGYNIQGGDGYIVTIYNLDGMHPVWQNNVQMSPKPMRIVSQSVDKIVLRGYPVQAMSPFGWIDFNGEDYGLTICIQDGEVDKCVLHLHDRKIDLEYLK","","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No significant hits in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Wed Feb 7 11:23:40 MST 2001","Wed Feb 7 11:23:40 MST 2001","Wed Feb 7 11:23:40 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","10","" "PG0987","1181201","1180803","399","GTGGGACTGGGTAGGCAAAGTTTAAATATTATGACCTTTAGTGGACAAGAATTGACGGCTATTATTAAAATGGCAAAGTCAATGGTAATGGCAGATGGGAAGATCAAGCCAGCTGAAATAGCCGTAATGACAAGAGAGTTCATGCGTTTTGGTATCCTACAAGACCAAGTAGATTTATTATTGAAAGCCTCTGACAGTATTGAGGCAAGTCAAGCAGTCGCACTGATTGCCAGAATGGATGAAGAACGCAAAAAGTATGTGGCGTCTTATCTTGGTGTAATAATGGCTTCCGATGGGGATATAGACGACAATGAGCTTGCACTATGGACGCTTATTTCCACATTATGTGGTTTGCCTACAATGACCGTAATGGAGGCTATCAATAATATGAAAAACCTT","4.60","-4.05","14575","VGLGRQSLNIMTFSGQELTAIIKMAKSMVMADGKIKPAEIAVMTREFMRFGILQDQVDLLLKASDSIEASQAVALIARMDEERKKYVASYLGVIMASDGDIDDNELALWTLISTLCGLPTMTVMEAINNMKNL","1181201 1180803","TIGR ID: PG1108","hypothetical protein","Inner membrane, Cytoplasm","No significant hits in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Feb 7 11:30:15 MST 2001","Wed Feb 7 11:30:15 MST 2001","Wed Feb 7 11:30:15 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","-100% similar to PDB:2H5N Crystal structure of hypothetical protein PG_1108 from Porphyromonas gingivalis W83 (E_value = 1.4E_68);","","","No significant hits to the Pfam 11.0 database","Thu Feb 22 19:28:56 MST 2001","34540841","","","","","","1","","10","PG1108" "PG0988","1182885","1181521","1365","ATGGGATATTGTGTATTGCATTTGGAAAAGGCAAAGGGAGCTGACAGCGGAATGTCGGCACATATCGAGCGCACCATCGTGCCAAAGAACATAGACCCAACGAGGACGCATCTAAACCGTGAGTTAATAATGTTTCCCGACGGCGTGTGCAACCGCACGTTAGCCATACGCCACCGCCTTGACACGGCGGGACTGAAACGTAAGATTGGAAAGAACCAAGTGCAGGCAATACGCATCGTGCTGAGCGGAACGCACGAGGATATGGCACGGATGGAAGACGAAGGGAGGCTCGGAGAGTGGTGCGATGACAGCGTGGCGTGGCTGAGAGAGACCTACGGAGCTGAAAACCTCGTATCGGCAGTGCTGCACATGGACGAGGAAACGCCGCACATCCATGCCACCGTAGTGCCGATAGTGCAGGGCGAGCGCAGGAAGCAGAAGAAGGAAGAGAACGCAAGGCGCAGGTACAGGACGAAAGCACCTGCCCCACGCCTCTGTGCGGACGAGGTGATGAGCCGTGCCAGCCTTATCAGGTATCAGGACACCTACGCCGAACACATGGAGAAGTACGGGCTGAAAAGAGGTGTAAGAGGGTCTCTCGCCAAGCACCTCTCCACACACGAGTATTACCGCAGCCTTATCACGCAGGGCGAGGACATACAGGCGAACATTGCCACCCTGCTGTCAAGAGAGACAGAGGCAAGTCGAATCATTGCAGAGGCAGAGCAAGCTAAGCAGGAACTCGCACGCATCAAGGCGGAGACAAAGACGGTGGAACTGAAGAACTCCGCTGCCAGGACTGCCACCGCAGCACTCAACGGAATTGGTTCTCTTTTGGGAAGCAACAAGATGAGCAGGCTCGAAAGCGAGAACAGGCAGTTGCACGGTGAGGTGGCGGAACTAAAAGAGAGCATCGAACAGATGCGCACGGACATGCAGAAAATGAGAGACAGCTACACCGCCGAGCAGTTGCGGGTATCGGAGCAACATCAGCGTGAAATTGGCAATTTCAGGCGCATCATCGACAAGGCGAAGGAGTGGTTTCCTATACTTGCCGAGTTCCTCAGAATAGAAAGGATTTGCCGTTCGGTCGGATTATCCGAGAGACATACTGATGAACTGCTACAGGGAAAAGTCCTTGTCGTTACGGGAAAACTGTTTTCGGATGAGTACAAGCGTTCGTTCACCGTTGAGAAGGTACGCTTGAAGGTGGGCAGGGAGGAAAGGGATGGCAAGACCGTGCTTGACCTGCTCGTGGACAGAGTTCCGATTGCTGCGTGGTTCAAGGAGAAATGGGAGAAAGTATCAATAAATAGGTTTAGAAGAAATGAGATGACCATCCAAAAAGAGCGGGGTGTAAGACTA","10.10","16.19","52295","MGYCVLHLEKAKGADSGMSAHIERTIVPKNIDPTRTHLNRELIMFPDGVCNRTLAIRHRLDTAGLKRKIGKNQVQAIRIVLSGTHEDMARMEDEGRLGEWCDDSVAWLRETYGAENLVSAVLHMDEETPHIHATVVPIVQGERRKQKKEENARRRYRTKAPAPRLCADEVMSRASLIRYQDTYAEHMEKYGLKRGVRGSLAKHLSTHEYYRSLITQGEDIQANIATLLSRETEASRIIAEAEQAKQELARIKAETKTVELKNSAARTATAALNGIGSLLGSNKMSRLESENRQLHGEVAELKESIEQMRTDMQKMRDSYTAEQLRVSEQHQREIGNFRRIIDKAKEWFPILAEFLRIERICRSVGLSERHTDELLQGKVLVVTGKLFSDEYKRSFTVEKVRLKVGREERDGKTVLDLLVDRVPIAAWFKEKWEKVSINRFRRNEMTIQKERGVRL","1182885 1181521","TIGR ID: PG1109","mobilization protein","Cytoplasm","Numerous significant hits to mobilization protein in gapped BLAST; e.g. residues 1-455 are 48% similar to gb|AAD24590.1| mobilization protein BmpH of Bacteroides fragilis, residues 214-455 are 31% similar to gb|AAF74438.1|AF238307_2 MobN1 of Bacteroides uniformis, residues 214-455 are 31% similar to gb|AAD43599.1| mobilization protein of Bacteroides fragilis.","
InterPro
IPR001668
Family
Plasmid recombination enzyme
PF01076\"[1-211]TMob_Pre


","BeTs to 4 clades of COG1196COG name: Chromosome segregation ATPasesFunctional Class: DThe phylogenetic pattern of COG1196 is am-kYqvc-br---gpol---Number of proteins in this genome belonging to this COG is 4","***** PF01076 (Plasmid recombination enzyme) with a combined E-value of 2.8e-16. PF01076A 112-137 PF01076B 168-197","Residues 331-455 are 34% similar to a (PROTEIN MOBILIZATION MOB MOBILITY) protein domain (PD020750) which is seen in Q45796_BACVU.Residues 214-334 are 30% similar to a (PROTEIN MOBILIZATION MOB MOBILITY) protein domain (PD033190) which is seen in Q07719_BACUN.Residues 214-346 are 30% similar to a (PROTEIN COILED COIL REPEAT FILAMENT HEPTAD PATTERN CHAIN) protein domain (PD000002) which is seen in Q45639_BBBBB.Residues 67-214 are 30% similar to a (PLASMID PROTEIN RECOMBINATION) protein domain (PD002441) which is seen in Q51989_BACCE.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Feb 7 11:46:44 MST 2001","Wed Feb 7 11:46:44 MST 2001","Wed Feb 7 11:46:44 MST 2001","Wed Mar 14 16:14:43 MST 2001","Wed Mar 14 16:14:43 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","Residues 1 to 211 (E-value = 1.8e-33) place PG0988 in the Mob_Pre family which is described as Plasmid recombination enzyme (PF01076)","Wed Mar 14 16:14:43 MST 2001","34540842","","","Vedantam,G., Novicki,T.J. and Hecht,D.W. 1999. Bacteroides fragilis transfer factor Tn5520: the smallest bacterial mobilizable transposon containing single integrase and mobilization genes that function in Escherichia coli. J. Bacteriol. 181 (8): 2564-2571. PubMed: 10198023.","","Wed Feb 7 11:46:44 MST 2001","1","","10","PG1109" "PG0989","1182884","1183297","414","ATGATGTTGTCGTTTTATAGTTGTCGTCTTTTGTCTTTTATATTCCTGATTTTATCGGTGAGAGGGAAAATGAAACTTGTTTCAGCTTGCCCGTTCCTTCATGCCAACAGGCTCGGCAGGGGTGTCCAGAGGGGTGCAACCCCGTTGGCTTATTGGGAGATTTTCAGCGGACACGGAGTGAAGCGTGAGGAAAATCCCCTAATGAGCTACGGTATTTTCTCTTTTGAAAATATCCGTACCGTGCTTACCACGTGGGCATTTGCCCCAGCCACTTCTTTCCCTTGTATTCTGAAGTCCCCACGGCTTCTCCATCGGTGCTGCCGATTGGACTTGTTTCTCCGAAGGCATACTTGGACTGCACCCGAATGTCTGAACCCCCTGCATACTTGGAAATACAGAATGCACGGCTTGCCG","10.90","13.14","16002","MMLSFYSCRLLSFIFLILSVRGKMKLVSACPFLHANRLGRGVQRGATPLAYWEIFSGHGVKREENPLMSYGIFSFENIRTVLTTWAFAPATSFPCILKSPRLLHRCCRLDLFLRRHTWTAPECLNPLHTWKYRMHGLP","1182884 1183297 [Delay by 234 1268 236 0]","TIGR ID: PG1110","hypothetical protein","Outer membrane, Inner membrane, Cytoplasm","No hits found in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-22]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Feb 7 11:57:56 MST 2001","Wed Feb 7 11:57:56 MST 2001","Wed Feb 7 11:52:46 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540843","","","","","","1","","10","PG1110" "PG0990","1184186","1183512","675","GTGGACGAGGTGCTTCTCGACCGCAGGGAGGACAGCGAGCGGCTCAAGAACCTCAGCACCACCCTTTCCTACAAGGTGGAGGCGGAGGATAAGGACAGGGACGAGATTTCGTTCTTTGCCAAGTTTGTACTATGCTCCAACAACGAACACCTGCCCGTCATCATCGACGCAGGGGAGACGCGCTATTGGGTAAGAAAAGTAGGGAGGATAGAGAGGGACGACACGGATTTCCTGCAAAGGGTGAAGGATGAAATACCTGCCTTTCTGCATTTCCTTGAACACCGCACACTGTCCACGACAAAAGAGAGCCGTATGTGGTTCAGTCCCGAACTCATCCACACGCAAGCCCTGAGCAGGATTATACGGAGCAACCGCAACAGGACGGAGGTGGAGATGGCGGAAATCTGCCTTGAAGTCATGGACTGTATGAAAGCGTCCGCTTTCTCCTTCTGCATCAACGATATGCTCCTGCTGCTGAACTGCGCAGGTTGCAGGACGGACAGGACGCAGGTAAGGCGCATCGTGCAGGATATATGGAAACTCACCCCTGCCGAAAACACACTCACCTATACGACCTGCCAGCCGAGCTATGACAACATGCGCCCATACACGGAGGTAAGACGCACGGGGCGTTTCTACACCGTCGGCAGGAAGCAGTTGGAGGACATGCAGGGA","6.20","-2.35","26506","VDEVLLDRREDSERLKNLSTTLSYKVEAEDKDRDEISFFAKFVLCSNNEHLPVIIDAGETRYWVRKVGRIERDDTDFLQRVKDEIPAFLHFLEHRTLSTTKESRMWFSPELIHTQALSRIIRSNRNRTEVEMAEICLEVMDCMKASAFSFCINDMLLLLNCAGCRTDRTQVRRIVQDIWKLTPAENTLTYTTCQPSYDNMRPYTEVRRTGRFYTVGRKQLEDMQG","1184186 1183512","TIGR ID: PG1111","conserved hypothetical protein","Cytoplasm","One significant hit to unknown protein in gapped BLAST; e.g. residues 1-220 are 61% similar to gb|AAF74441.1|AF238307_5 unknown protein of Bacteroides uniformis.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","","","","","Wed Feb 7 12:11:46 MST 2001","Wed Feb 7 12:37:02 MST 2001","Wed Feb 7 12:11:46 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Jun 13 14:35:51 MDT 2001","","","","Shoemaker,N.B., Wang,G.R. and Salyers,A.A. 2000. Multiple gene products and sequences required for excision of the mobilizable integrated Bacteroides element NBU1. J. Bacteriol. 182 (4): 928-936. PubMed: 10648516.","","Wed Feb 7 12:11:46 MST 2001","1","","10","PG1111" "PG0991","1184909","1184211","699","TTGCTCCGCATCTCCCTGTTTTCCTCTGTTTTAATTCCGTTCTGTTTTTCTTTCACTGTTCCGCATCATTCTTCACAAGTGGGTTTCGGAACGATGTCCGTAACTTTGCACGATACATATATCAATCATTTAAGCAAGAAAGAAATGAGTAAGAAAAACAATGACGAGCTGTTGGAAGACAAGCCCGAAAAAAGAGAAAGGAGAATAGAGGACGGGGCATTCGTCCGTGTGGGAACGACGCTCTACAAGATGGTAAACCTGCCACTCGTCGGAGGCGGTTTCGTCAAGAAGCGCATCGTGTGGAACAACGAGACGCTACGGCAGGACTACGGCAGGGACTATCTGGCGACCGTCCCGAAGTATGACGGCTTCTGCACCGTCCCCGACCATGTGAACTATCAGCCCGTGATAGGCAGTTTCCTCAATCTCTACGAGCCGACGGGACACCAGCCGAAGAAAGGTGCGTTTCCCCATATAGAGACATTGGTAAGGCACATCTTCGGGGAGCAGTACGAGCTGGGCATGGACTATTTGCAACTGCTCTACCTGCGTCCCATACAGAAACTGCCCATCCTGCTGCTCGTATCGGAGGAGCGAAACACGGGCAAGAGCACATTTCTCAACTTCCTCAAAGCCCTCTTCGGCAGCAATGTAACCTTCAACACCAACGAGGACTTTCGAAGTCAGTTCAACTCGGAC","8.60","3.83","26815","LLRISLFSSVLIPFCFSFTVPHHSSQVGFGTMSVTLHDTYINHLSKKEMSKKNNDELLEDKPEKRERRIEDGAFVRVGTTLYKMVNLPLVGGGFVKKRIVWNNETLRQDYGRDYLATVPKYDGFCTVPDHVNYQPVIGSFLNLYEPTGHQPKKGAFPHIETLVRHIFGEQYELGMDYLQLLYLRPIQKLPILLLVSEERNTGKSTFLNFLKALFGSNVTFNTNEDFRSQFNSD","1184909 1184211","NO TIGR ID corresponds to this gene.","conserved hypothetical protein","Cytoplasm","One significant hit to unknown protein in gapped BLAST; e.g. residues 69-233 are 75% similar to gb|AAF74441.1|AF238307_5 unknown protein of Bacteroides uniformis.","
noIPR
unintegrated
unintegrated
signalp\"[1-17]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Feb 7 12:49:57 MST 2001","Wed Feb 7 12:49:57 MST 2001","Wed Feb 7 12:49:57 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","Shoemaker,N.B., Wang,G.R. and Salyers,A.A. 2000. Multiple gene products and sequences required for excision of the mobilizable integrated Bacteroides element NBU1. J. Bacteriol. 182 (4): 928-936. PubMed: 10648516.","","Wed Feb 7 12:49:57 MST 2001","1","","10","" "PG0993","1185619","1185233","387","ATGACAATGAAAGGGAAAGGCATAAACAGCAATGTCCGTCAGATAATCACGGTGGACGAACATGGGAACATCACCGTACCCAATGAAGAAATATGGATGAGCGAGTATGAGATTGCCGACCTGCTGGGCGTATTCGGACATACCATCCGCACGCAGGTCAAGAAGATATACAGGGATGGACTGCTGCACTCCTGCACGGCAGAGAGGAACATCAGGGTGGCGGAGGGTCGCTGGCTTGATGTGTACAGCCTTGAAATGGTCATAGCCCTTGCGTTCCGCATCAGGTCGCAAAGGGCAAAAAGGCTTCGAAAGCATGTCATCGCAATGCTGACCGAACGACACGGAGGCTTTATCATGTTCCTCCCAGCAGAAGCAGGTTGTTCCTGC","9.40","5.05","14714","MTMKGKGINSNVRQIITVDEHGNITVPNEEIWMSEYEIADLLGVFGHTIRTQVKKIYRDGLLHSCTAERNIRVAEGRWLDVYSLEMVIALAFRIRSQRAKRLRKHVIAMLTERHGGFIMFLPAEAGCSC","1185619 1185233 [Shadowed by 1274]","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No significant hits in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Feb 7 13:59:51 MST 2001","Wed Feb 7 13:59:51 MST 2001","Wed Feb 7 13:59:51 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 13-114 are 40% similar to PG1270 and PG0737, both hypothetical proteins.","Mon Apr 2 14:45:02 MDT 2001","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Apr 2 14:45:02 MDT 2001","","","","","","","1","","10","" "PG0994","1186839","1185619","1221","ATGGCAAGAAGCACATTCAAGGTGCTGTTCTATGTGAATGGCAGCAAGGAGAAAGAAGGTATCGTCCCCATCATGGGACGGGTTACAATCAACGGCACGGTGGCTCAGTTCAGTTGCAAGCGCACCATCCCAAAGGAGTTGTGGGATGTGAAAGGCAACAGGGCGAAAGGCAAGAGCAGGGAAGCCATCGCCACCAACCTCTCGCTCGACAACATCAAGGCGCAAATCATCAAGCACTATCAGCGTCTTTCCGACCGCGAGGCGTTCGTCACGGCGGAGATGGTGCGCAATGCCTATCAGGGGCTGGGCAGTGAGTACGATACCCTGCTGAAAGCGTTCGACAGGGATTGCGCCTCTCTGCTCAAGCGTGTGGGCAAGGACAGGAGCATGGGAACATACAAGGTGATGCTCAGGGCGAGGAACAACACGGCGAGGTTTATCCGCCACAAGTACAACCGCAGCGACATGTCGATGCTGGAACTCACCCCCGACTTCATCAGGGACTTCGCCGTGTACCTCAGCACGGTGAAAGGAAACAGGAACGCCACGATATGGATAAACTGCATGTGGCTCAAAGGCGTGGTGATGCGTGCGCACTTCAACGGCAAGATACCGAGAAACCCGTTCGCTCAGTTCCATGTCAGCCCGAACACGAAGGAGCGTGCGTTCCTCACGGAGGACGAGTTGAAGACACTGATGTCGCATGAGTTCAAGGACAGCCATTCCGCCTTCGTGCGTGATTTGTTTGTCTTCGCCTCCTTCACCGCCCTTTCCTTCGTGGACTTGAAGGAACTCACCATCGACGAGATTGTGGAGGTGAACGGTGAGAAGTGGATACTTGCGAAAAGGCACAAGACACAGGTGCCGTACCAAGTGAAACTGCTCGATGTACCCTTGCAAATCATCGACAGATACCGACCGTTCCAAAAGGACAACTCCATATTCGGGGACATCAACTACTGGACGGTCTGCAAGAAGCTCAAAAAAGTCATCAGCGAGTGCGGAATAACAAAAGACATCTCCTTCCATTGCGCAAGGCACGGCTTTGCGACATTGGCACTCAGTAAGGGCATGCCGATTGAGAGCGTGAGCCGTGTACTCGGACACACGAACATCGTAACCACGCAACTCTATGCGAAGATAACCACCGAGAAACTCGACACCGACCTCTCCATGCTCGGCAGCAAGCTCAACGCCTCATTTGGCTATATCAAAATGGCA","10.50","25.13","46517","MARSTFKVLFYVNGSKEKEGIVPIMGRVTINGTVAQFSCKRTIPKELWDVKGNRAKGKSREAIATNLSLDNIKAQIIKHYQRLSDREAFVTAEMVRNAYQGLGSEYDTLLKAFDRDCASLLKRVGKDRSMGTYKVMLRARNNTARFIRHKYNRSDMSMLELTPDFIRDFAVYLSTVKGNRNATIWINCMWLKGVVMRAHFNGKIPRNPFAQFHVSPNTKERAFLTEDELKTLMSHEFKDSHSAFVRDLFVFASFTALSFVDLKELTIDEIVEVNGEKWILAKRHKTQVPYQVKLLDVPLQIIDRYRPFQKDNSIFGDINYWTVCKKLKKVISECGITKDISFHCARHGFATLALSKGMPIESVSRVLGHTNIVTTQLYAKITTEKLDTDLSMLGSKLNASFGYIKMA","1186839 1185619","PG0994 is most similar to gb|AAC80279.1| transposase protein of Bacteroides fragilis. TIGR ID: PG1113","transposase","Cytoplasm","Several significant hits in gapped BLAST; e.g. residues 3-397 are 42% similar to gb|AAC80279.1 transposase of Bacteroides fragilis, residues 126-315 are 31% similar to gb|AAG12447.1| integrase-like protein Int of Bacteroides fragilis, residues 160-386 are 26% similar to gb|AAB53787.2| integrase of Bacteroides fragilis.","
InterPro
IPR002104
Domain
Integrase, catalytic core, phage
PF00589\"[335-388]TPhage_integrase
InterPro
IPR011010
Domain
DNA breaking-rejoining enzyme, catalytic core
SSF56349\"[222-391]TDNA_brk_join_enz
InterPro
IPR013762
Domain
Integrase-like, catalytic core, phage
G3DSA:1.10.443.10\"[223-386]TPhage_intgr_like


","BeTs to 12 clades of COG0582COG name: IntegraseFunctional Class: LThe phylogenetic pattern of COG0582 is aMtK-qvcEBRHUJ---LINXNumber of proteins in this genome belonging to this COG is 8","No significant hit to the Blocks database.","Residues 325-386 are 55% similar to a (INTEGRASE DNA PROTEIN RECOMBINATION INTEGRATION PLASMID) protein domain (PD000437) which is seen in Q9ZI85_BACFR.Residues 3-315 are 41% similar to a (TRANSPOSASE) protein domain (PD214991) which is seen in Q9ZI85_BACFR.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","Wed Mar 28 13:43:43 2001","Wed Feb 7 14:40:56 MST 2001","Wed Feb 7 14:40:56 MST 2001","Wed Feb 7 14:40:56 MST 2001","","Wed Mar 28 13:07:40 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG0944 is paralogously related to integrase/recombinase (XerD-related) protein PG1510.Residues 6-390 are 34% similar to PG1272, residues 6-390 are 34% similar to PG0735, residues 3-347 are 34% similar to PG0749, residues 3-347 are 29% similar to PG1258, residues 3-393 are 27% similar to PG0736, residues 1-176 are 30% similar to PG0757, residues 220-385 are 27% similar to PG0784, residues 219-386 are 25% similar to PG0352. ","Wed Feb 7 14:40:56 MST 2001","","No significant hits to the PDB database (E-value < E-10).","","","Residues 224 to 388 (E-value = 4.1e-09) place PG0994 in the Phage_integrase family which is described as Phage integrase family (PF00589)","Wed Mar 28 13:43:43 2001","34540845","","","Vedantam,G., Novicki,T.J. and Hecht,D.W. 1999. Bacteroides fragilis transfer factor Tn5520: the smallest bacterial mobilizable transposon containing single integrase and mobilization genes that function in Escherichia coli. J. Bacteriol. 181 (8): 2564-2571. PubMed: 10198023.","","Wed Feb 7 14:40:56 MST 2001","1","","10","PG1113" "PG0995","1187180","1187533","354","ATGTACGTCGAAGTATTAAAATCCAAAATACACCGCGTAACCATTACGGAGGCCAACCTCAACTATGTGGGTAGCATCACCATCGATGAAGATCTGATGGATGCTGCCAACATCATCGCCGGAGAGAAAGTCCAAATCGTGGACAACAACAACGGAGCACGCTTGGAGACCTATACCATACCGGGCAAAAGAGGTTCGGGGGTAATCTGTCTCAATGGAGCAGCTGCCCGCATCGTTCATCCGGGCGACATCATCATCATCATGGCATATGCCTGGATGCCGATGGAGGAAGCCAAGGTGTTCAAGCCTGCTGTAGTATTTCCCGATACTGCAACGAACAAGATAATCCTGAAG","6.50","-0.58","12869","MYVEVLKSKIHRVTITEANLNYVGSITIDEDLMDAANIIAGEKVQIVDNNNGARLETYTIPGKRGSGVICLNGAAARIVHPGDIIIIMAYAWMPMEEAKVFKPAVVFPDTATNKIILK","1187060 1187533","TIGR ID: PG1114","aspartate 1-decarboxylase protein","Cytoplasm","Numerous significant hits to aspartate 1-decarboxylase protein in gapped BLAST; e.g. residues 1-105 are 66% similar to gb|AAB38450.1| aspartate 1-decarboxylase of Bacillus subtilis, residues 1-115 are 62% similar to aspartate 1-decarboxylase of Neisseria meningitidis MD58, residues 1-105 are 61% similar to dbj|BAB05408.1| aspartate 1-decarboxylase of Bacillus haloduran.","
InterPro
IPR003190
Family
Aspartate decarboxylase
PD009294\"[1-100]TAsp_decarbox
PTHR21012\"[2-118]TAsp_decarbox
PF02261\"[1-117]TAsp_decarbox
TIGR00223\"[1-116]TpanD
InterPro
IPR009010
Domain
Aspartate decarboxylase-like fold
SSF50692\"[1-115]TAsp_decarb_fold
noIPR
unintegrated
unintegrated
G3DSA:2.40.40.20\"[1-117]TG3DSA:2.40.40.20


","BeTs to 7 clades of COG0853COG name: Aspartate 1-decarboxylaseFunctional Class: HThe phylogenetic pattern of COG0853 is -----qvcebr-uj-------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 1-105 are 66% similar to a (ASPARTATE 1-DECARBOXYLASE PRECURSOR) protein domain (PD009294) which is seen in PAND_BACSU.","","Wed Jun 13 14:31:20 MDT 2001","","Wed Jun 13 14:33:20 MDT 2001","Wed Jun 13 14:33:20 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Jun 13 14:33:20 MDT 2001","Wed Jun 13 14:33:20 MDT 2001","","","Wed Feb 7 14:57:56 MST 2001","Tue Jun 19 09:14:04 MDT 2001","Wed Feb 7 14:57:56 MST 2001","","Tue Jun 19 09:09:30 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","-80% similar to PDB:2C45 NATIVE PRECURSOR OF PYRUVOYL DEPENDENT ASPARTATE DECARBOXYLASE (E_value = 2.2E_33);-66% similar to PDB:1PPY Native precursor of pyruvoyl dependent Aspartate decarboxylase (E_value = 4.0E_22);-74% similar to PDB:1VC3 Crystal Structure of L-Aspartate-alpha-Decarboxylase (E_value = 5.2E_22);-66% similar to PDB:1PQE S25A mutant of pyruvoyl dependent aspartate decarboxylase (E_value = 8.8E_22);-66% similar to PDB:1PQH Serine 25 to Threonine mutation of aspartate decarboxylase (E_value = 8.8E_22);","","","Residues 1 to 117 (E-value = 2.5e-69) place PG0995 in the Asp_decarbox family which is described as Aspartate decarboxylase (PF02261)","Tue Jun 19 09:09:30 MDT 2001","34540846","","","","","","1","","10","PG1114" "PG0996","1187613","1188947","1335","ATGTTTGAAAATCTGAGCGAACGGCTCGACCGTTCTTTTAAACTCCTCAAAGGTGAGGGGAGAATTACCGAGATCAATGTAGCCGAAACTCTCAAAGATGTACGTCGTGCCCTTTTGGATGCCGACGTGAACTATGTCGTTGCCAAGCAGTTTACGGACTTGGTGAAGGAAAAAGCCATCGGCCAAAACGTGCTGACCTCCGTCCGTCCGGGCGAACTGATGGTGAAGATCGTTCATGACGAATTGGCTGCTCTGATGGGCGGACATTCTGTGGATATTAATCTCAAAGGCAGTCCGGCAGTAATCCTGATGTCCGGATTGCAAGGTTCGGGTAAGACCACCTTCTCCGGCAAACTGGCCAATATGCTCAAGTCCAAGCAGGGCAAACGACCTCTGCTCGTTGCCTGCGACGTGTATCGCCCTGCGGCTATCCAGCAGCTGATGATCCTCGGCGAGCAGCTCGGGGTACCCGTCTACAGCGAACCGGACAGCAAAAAGCCGGTCGAGATAGCCCGACACGCCATAGCCGAAGCCAAGACCAAGGGGAACGACGTTGTCATCATCGACACCGCGGGTCGTTTGGCCATCGACGAAGAAATGATGCGCGAGATAGAGGCCATCAAGGCTGCCATCCAGCCGAACGAAGTCCTTTTCGTGGTGGACTCGATGACCGGTCAGGACGCCGTGAATACAGCCAAGGAGTTCAATACACGCTTGGATTTCGACGGTGTTGTCCTTACCAAGCTCGATGGAGATACCCGGGGCGGTGCCGCCCTCTCGATCCGTTCGGTCGTAAACAAGCCCATCAAGTTCGTCGGTACGGGGGAGAAGATGGAAGCAATCGATGCTTTTCACCCCGAGCGTATGGCCGACCGTATCCTTGGCATGGGGGACATCGTATCGCTTGTGGAGCGTGCTCAGGAGCAATACGACGAACGGGAAGCTCGCAAACTGGAGGAGAAAATAGCCAAGAATCAGTTCGACTTCAATGACTTCCTTGCCCAGATACATCAGATCAAAAAGATGGGTAACCTCAAAGAGCTTGCATCCATGATCCCGGGAGTGGGAAAGGCCATCAAGGATATCGACATAGACGACGATGCCTTCAAGAGCATCGAGGCTATCATATATTCCATGACGCCCCATGAGCGCACTCATCCCTCTATCCTCAACGGACAGCGTCGCAAGCGAATAGCAATGGGTAGCGGCACTTCCATACAGGATGTCAATAAGTTGATCACGCAGTTCGACCAGACGCGTAAGATGATGAAGACCATACAGGGATTCAAAGGCGGCAAAATGCCGAAGATGCCGCGCATGCCGAAGATGAAGAGA","9.80","7.68","49292","MFENLSERLDRSFKLLKGEGRITEINVAETLKDVRRALLDADVNYVVAKQFTDLVKEKAIGQNVLTSVRPGELMVKIVHDELAALMGGHSVDINLKGSPAVILMSGLQGSGKTTFSGKLANMLKSKQGKRPLLVACDVYRPAAIQQLMILGEQLGVPVYSEPDSKKPVEIARHAIAEAKTKGNDVVIIDTAGRLAIDEEMMREIEAIKAAIQPNEVLFVVDSMTGQDAVNTAKEFNTRLDFDGVVLTKLDGDTRGGAALSIRSVVNKPIKFVGTGEKMEAIDAFHPERMADRILGMGDIVSLVERAQEQYDEREARKLEEKIAKNQFDFNDFLAQIHQIKKMGNLKELASMIPGVGKAIKDIDIDDDAFKSIEAIIYSMTPHERTHPSILNGQRRKRIAMGSGTSIQDVNKLITQFDQTRKMMKTIQGFKGGKMPKMPRMPKMKR","1187613 1188947 [Shadowed by 1281]","TIGR ID: PG1115","signal recognition particle GTPase protein (SRP)","Cytoplasm","Numerous significant hits to signal recognition particle protein in gapped BLAST; e.g. residues 2-424 are 53% similar to dbj|BAB06203.1| signal recognition particle of Bacillus halodurans, residues 2-424 are 53% similar to emb|CAB13471.1| signal recognition particle of Bacillus subtilis, residues 1-424 are 51% similar to gb|AAF69242.1|AF173880_5 signal recognition particle protein-like protein of Acidithiobacillus ferrooxidans.This sequence is similar to BT1601.","
InterPro
IPR000897
Domain
GTP-binding signal recognition particle SRP54, GTPase
PD000819\"[102-193]TSRP54
PF00448\"[98-295]TSRP54
PS00300\"[268-281]TSRP54
InterPro
IPR002016
Family
Haem peroxidase, plant/fungal/bacterial
PS00435\"[81-91]?PEROXIDASE_1
InterPro
IPR003593
Domain
AAA+ ATPase, core
SM00382\"[98-300]TAAA
InterPro
IPR004125
Domain
GTP-binding signal recognition particle SRP54, M-domain
G3DSA:1.10.260.30\"[326-428]TSRP54_M
PF02978\"[326-423]TSRP_SPB
InterPro
IPR004780
Family
Signal recognition particle protein
PTHR11564:SF7\"[74-443]TSRP_sub
TIGR00959\"[2-425]Tffh
InterPro
IPR013822
Domain
GTP-binding signal recognition particle SRP54, helical bundle
G3DSA:1.20.120.140\"[1-90]TSRP54_helical
PF02881\"[1-87]TSRP54_N
SSF47364\"[2-88]TSRP54
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[92-297]TG3DSA:3.40.50.300
PTHR11564\"[74-443]TPTHR11564
SSF47446\"[297-427]TSSF47446
SSF52540\"[94-295]TSSF52540


","BeTs to 17 clades of COG0541COG name: Signal recognition particle GTPase FfhFunctional Class: NThe phylogenetic pattern of COG0541 is amtkyqvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB000897 (SRP54-type protein, GTP-binding domain) with a combined E-value of 3.4e-53. IPB000897A 101-139 IPB000897B 184-207 IPB000897C 213-255","Residues 27-294 are 58% similar to a (PROTEIN SIGNAL RECOGNITION PARTICLE GTP-BINDING) protein domain (PD000819) which is seen in SR54_BACSU.Residues 295-416 are 44% similar to a (SIGNAL RECOGNITION PARTICLE PROTEIN GTP-BINDING) protein domain (PD001802) which is seen in Q9ZK62_BBBBB.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Mon Apr 16 17:51:38 MDT 2001","Thu Dec 4 15:57:07 2003","Wed Feb 7 15:21:44 MST 2001","Mon Apr 2 14:49:03 MDT 2001","Mon Apr 2 14:49:03 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 3-295 are 30% similar to PG0139, a predicted signal recognition particle.","Mon Apr 2 14:49:03 MDT 2001","","-68% similar to PDB:2J28 MODEL OF E. COLI SRP BOUND TO 70S RNCS (E_value = 1.0E_117);-65% similar to PDB:2FFH THE SIGNAL SEQUENCE BINDING PROTEIN FFH FROM THERMUS AQUATICUS (E_value = 6.7E_101);-63% similar to PDB:2IY3 STRUCTURE OF THE E. COLI SIGNAL RECOGNITION PARTICLE BOUND TO A TRANSLATING RIBOSOME (E_value = 4.8E_91);-68% similar to PDB:1RJ9 Structure of the heterodimer of the conserved GTPase domains of the Signal Recognition Particle (Ffh) and Its Receptor (FtsY) (E_value = 1.7E_75);-69% similar to PDB:1O87 A NEW MGGDP COMPLEX OF THE FFH NG DOMAIN (E_value = 4.8E_75);","","","Residues 1 to 87 (E-value = 3.4e-24) place PG0996 in the SRP54_N family which is described as SRP54-type protein, helical bundle domain (PF02881)Residues 98 to 295 (E-value = 3.4e-114) place PG0996 in the SRP54 family which is described as SRP54-type protein, GTPase domain (PF00448)Residues 326 to 423 (E-value = 3.1e-46) place PG0996 in the SRP_SPB family which is described as Signal peptide binding domain (PF02978)","Thu Dec 4 15:57:07 2003","34540847","","","Honda,K., Nakamura,K., Nishiguchi,M. and Yamane,K. 1993. Cloning and characterization of a Bacillus subtilis gene encoding a homolog of the 54-kilodalton subunit of mammalian signal recognition particle and Escherichia coli Ffh. J. Bacteriol. 175 (15): 4885-4894. PubMed: 8335643.","","Wed Feb 7 15:33:32 MST 2001","1","","10","PG1115" "PG0997","1189074","1189961","888","ATGGAAACGACATACAAACTTCTCGACGGGAAAAAGATTTCCGGCGAAATAAAACAAGAGATTGCAGCCGTAGTAAACGAGCTGTTGGAGAAAGGTGGTCGCCGTCCGCATTTGGCGGGCGTGCTCGTAGGTCATGATGGCGGTAGCGAGACCTATATGGCCAGCAAGGTAAAAGCTTGCGAAGAGGTGGGCTTCACCTCCTCGCTCATTCGCTACGAAGACGATGTGACGGAGGAGGAATTGCTGGCCTGCGTGCATCGCCTGAATCAGGATCCGACGGTAGATGGCTTCATCGTACAGCTCCCCCTCCCGAAGCATATCGACGAGCAGAAAATCATCGAAGCAGTAGACCCGCGCAAGGATGTGGACGGATTTCATCCCATCAACGTAGGCCGTCTGAGCATCGGTTTGCCCGGTTTCGTCTCGGCCACACCGAAGGGAATAGTGGAACTGCTTCGTCGCTACAATATCCCTACCAGAGGCAAGCATTGCGTAGTATTGGGACGCAGCAATATCGTAGGCAAGCCCGTATCGCAGCTTCTGCTCCAAAAGGGAGAGCCGGGCGACTGCACCATCACCATCTGCCATAGCCGTACCCCTAACATCAAAGAGGTATGTCTGACGGCCGACATTATTATTGCAGCTTTGGGGCAGCCCGAATTCCTGACAGCCGATATGGTAAAGCCCGGAGCTGTAGTAGTGGACGTAGGTACCACGCTTGTACCGGACTCGACACGCAAAAGCGGTTTCCGTCTGACGGGCGACGTCAAATTCGATGAAGTGGCCCCCAAGTGCTCGTACATCACTCCCGTACCGGGCGGAGTAGGTCCGATGACCATCGTATCGCTCATGTCCAATACCCTTCTGGCAAGTAAAGGATTGTACCGG","6.80","-0.64","31919","METTYKLLDGKKISGEIKQEIAAVVNELLEKGGRRPHLAGVLVGHDGGSETYMASKVKACEEVGFTSSLIRYEDDVTEEELLACVHRLNQDPTVDGFIVQLPLPKHIDEQKIIEAVDPRKDVDGFHPINVGRLSIGLPGFVSATPKGIVELLRRYNIPTRGKHCVVLGRSNIVGKPVSQLLLQKGEPGDCTITICHSRTPNIKEVCLTADIIIAALGQPEFLTADMVKPGAVVVDVGTTLVPDSTRKSGFRLTGDVKFDEVAPKCSYITPVPGGVGPMTIVSLMSNTLLASKGLYR","1189074 1189961 [Shorter 1281 588 99]","TIGR ID: PG1116","methylenetetrahydrofolate dehydrogenase","Cytoplasm","This sequence is similar to CT078.Numerous significant hits in gapped BLAST; e.g. residues 7-295 are 50% similar to pirT01226 probable methylenetetrahydrofolate dehydrogenase (NADP+) of Arabidopsis thaliana, residues 19-287 are 50% similar to gbAAD18484.1 Methylene Tetrahydrofolate Dehydrogenase of Chlamydophila pneumoniae CWL029, residues 6-290 are 50% similar to gbAAA98507.1 methylenetetrahydrofolate dehydrogenase-cyclohydrolase of Photobacterium phosphoreum.Thisd sequence is similar to BT1607.","
InterPro
IPR000672
Domain
Tetrahydrofolate dehydrogenase/cyclohydrolase
PD002300\"[11-128]TTHFDhg/Cyc_hydro
PR00085\"[36-58]T\"[77-104]T\"[112-133]T\"[157-177]T\"[210-239]T\"[251-267]T\"[268-286]TTHFDHDRGNASE
PF00763\"[6-123]TTHF_DHG_CYH
PF02882\"[126-295]TTHF_DHG_CYH_C
PS00766\"[78-103]TTHF_DHG_CYH_1
PS00767\"[272-280]TTHF_DHG_CYH_2
noIPR
unintegrated
unintegrated
G3DSA:3.40.192.10\"[31-117]TG3DSA:3.40.192.10
G3DSA:3.40.50.720\"[135-276]TG3DSA:3.40.50.720
PTHR10025\"[16-292]TPTHR10025
SSF51735\"[125-292]TSSF51735
SSF53223\"[4-124]TSSF53223


","BeTs to 13 clades of COG0190COG name: 5,10-methylene-tetrahydrofolate dehydrogenaseFunctional Class: HThe phylogenetic pattern of COG0190 is ----YqvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB000672 (Tetrahydrofolate dehydrogenase/cyclohydrolase) with a combined E-value of 5.2e-100. IPB000672A 36-63 IPB000672B 72-122 IPB000672C 142-169 IPB000672D 209-240 IPB000672E 251-287","Residues 25-287 are 51% similar to a (METHYLENETETRAHYDROFOLATE DEHYDROGENASE CYCLOHYDROLASE) protein domain (PD002300) which is seen in Q9Z8K3_BBBBB.","","","","","","Wed Mar 8 14:11:24 MST 2000","Wed Mar 8 14:11:24 MST 2000","","","","","Wed Mar 22 12:03:23 MST 2000","Mon Jul 21 17:15:16 2008","Fri Apr 20 12:39:54 MDT 2001","Fri Apr 20 12:39:54 MDT 2001","Fri Apr 20 12:39:54 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Jul 21 17:15:16 2008","-64% similar to PDB:1B0A 5,10, METHYLENE-TETRAHYDROPHOLATE DEHYDROGENASE/CYCLOHYDROLASE FROM E COLI. (E_value = 8.1E_70);-63% similar to PDB:1A4I HUMAN TETRAHYDROFOLATE DEHYDROGENASE / CYCLOHYDROLASE (E_value = 1.1E_61);-63% similar to PDB:1DIA HUMAN METHYLENETETRAHYDROFOLATE DEHYDROGENASE / CYCLOHYDROLASE COMPLEXED WITH NADP AND INHIBITOR LY249543 (E_value = 1.1E_61);-63% similar to PDB:1DIB HUMAN METHYLENETETRAHYDROFOLATE DEHYDROGENASE / CYCLOHYDROLASE COMPLEXED WITH NADP AND INHIBITOR LY345899 (E_value = 1.1E_61);-63% similar to PDB:1DIG HUMAN METHYLENETETRAHYDROFOLATE DEHYDROGENASE / CYCLOHYDROLASE COMPLEXED WITH NADP AND INHIBITOR LY374571 (E_value = 1.1E_61);","","","Residues 6 to 123 (E-value = 6.5e-56) place PG0997 in the THF_DHG_CYH family which is described as Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain (PF00763)Residues 125 to 295 (E-value = 3.9e-102) place PG0997 in the THF_DHG_CYH_C family which is described as Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain (PF02882)","Mon Dec 8 09:35:45 2003","34540848","","","","","","1","","10","PG1116" "PG0999","1190153","1191601","1449","ATGCCAAAACCGAATTTTGACACGGCCTCCCTCCTGCCGATACTTTCAAGAATCGCTTCGTATCCTTTCCCGTTAGGAGGTAAAGGCGTACTTTCGCAGCACGCTATGGATGCTACAACGCAAAAGACCGGCCACTACGGGGCATTGCTCCGCCTCGGGCTACCCATTATCATCGGCCAACTGGGAATCATCTTCGTCAGCTTTGCCGATAATATCATGGTCGGGCAGCACTCCACAGCAGAGTTGGCCGCAGCCTCCTTTGTGAACAACATATTAGGCCTGCTCCTCATCCTCGGTATCGGCTTTGCATACGGGCTGACGCCGCTGGTGGCATCGGCCGAACACAGAGGGCAGTACTTCAAAGCCGGCATCCTGCTCCGGCACAGCCTCCGCCTCAATATAGCGATCGGACTCTTCCTCGCAGGTGTGGCAGCCGTGATGGTTCCCCTGTTCGATACATTCAACCTCCCACCCTCGCTCCGCCCTCTCGCCATCCCCTATTATTGGGTACAGGTGGGAGGCCTCTTCCTCGTCACGGTATTCAATGCCTTCAAGCAATTCTATGACGGCATGAGCGATACGCGCACCCCGATGTATATTACCATATCGGGCAATCTCTTCAATGTCGGGCTGAACTACCTGCTGATATTCGGCAAAGGCGGTCTCCCCGAAATGGGACTCCTCGGTGCGGGCTATGCCACCCTGTTGAGCCGCCTGCTGATGCTCGTCACCATCGTCCTTTTCCTCTATCGCAGACCCTCATGGACAGCGATCCGCCACGCCTTCTGCCGGCAGATGCATATCCGTCGCGCCTACCGCCGCCTATTCTCCGTCGGACTCCCCGTTGCCGTCCAGATGGGACTCGAATCGGCCTCTTTCACCATCGCCGTCCTTTTTGTCGGGCGACTCGGCGATCAGGCTCTGGCAGCACACCAGATCGTCTGCGTCATCACCACGCTCGGCTACCTCGTCTATTACGGGCTTGGTGCTGCCACCACCATCCGCATCAGTCACTTCAAGCTGCACGGCAAACCCGACGAAGTCCGCCGCGTAGCCGCCACTGCCTACCGAATGGCCGCTTTGACTGCCTGCGTTGTGGTTGTACTGCTTTTGCTCACACGGCACAGCTTTTCCTTCCTCTTCACGCCCGACGAAGAGGTGGCGCACATCGTTGCCCTTACGTTGATCCCCGTTGTCGTCTACCAATTCGGAGATGCCCTCCAAGCCATCTATTCCAATGCTCTGCGAGGAATGGAGCGCGTTCGTTTTCTGGCTCCGGCAGCAGCTTTCTGCCACGTATTGCTGGCACCGATACTCTCCTATTTGCTGGGATTCGTATTCATATTGGGCAATACGCCCATGCAGTTGGCCGGTATCTGGTCGGCCTTTCCCATCAGCCTGACACTGCTCGGCATCCTCTTCTACAGCTACTTCCGGAAGGTAACCCGA","10.80","20.92","52844","MPKPNFDTASLLPILSRIASYPFPLGGKGVLSQHAMDATTQKTGHYGALLRLGLPIIIGQLGIIFVSFADNIMVGQHSTAELAAASFVNNILGLLLILGIGFAYGLTPLVASAEHRGQYFKAGILLRHSLRLNIAIGLFLAGVAAVMVPLFDTFNLPPSLRPLAIPYYWVQVGGLFLVTVFNAFKQFYDGMSDTRTPMYITISGNLFNVGLNYLLIFGKGGLPEMGLLGAGYATLLSRLLMLVTIVLFLYRRPSWTAIRHAFCRQMHIRRAYRRLFSVGLPVAVQMGLESASFTIAVLFVGRLGDQALAAHQIVCVITTLGYLVYYGLGAATTIRISHFKLHGKPDEVRRVAATAYRMAALTACVVVVLLLLTRHSFSFLFTPDEEVAHIVALTLIPVVVYQFGDALQAIYSNALRGMERVRFLAPAAAFCHVLLAPILSYLLGFVFILGNTPMQLAGIWSAFPISLTLLGILFYSYFRKVTR","1190063 1191601","TIGR ID: PG1117","conserved hypothetical protein","Inner membrane, Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 49-473 are 28% similar to gb|AAG04750.1|AE004565_9 probable transporter of Pseudomonas aeruginosa, residues 49-473 are 26% similar to gb|AAF94694.1| multidrug resistance protein NorM, putative of Vibrio cholerae, residues 49-483 are 26% similar to gb|AAG56652.1|AE005389_8 putative transport protein of Escherichia coli O157:H7.","
InterPro
IPR002528
Family
Multi antimicrobial extrusion protein MatE
PTHR11206\"[69-481]TMatE
PF01554\"[55-214]T\"[281-442]TMatE
TIGR00797\"[55-460]TmatE
noIPR
unintegrated
unintegrated
PTHR11206:SF7\"[69-481]TPTHR11206:SF7


","BeTs to 13 clades of COG0534COG name: Probable cation efflux pump (multidrug resistance protein)Functional Class: RThe phylogenetic pattern of COG0534 is amtKYqVCEBrhUJgpOl---Number of proteins in this genome belonging to this COG is 4","No significant hit to the Blocks database.","Residues 166-253 are 36% similar to a (PROTEIN TRANSMEMBRANE MVIN MEMBRANE TRANSPORTER) protein domain (PD001019) which is seen in O66528_AQUAE.","","Wed Jun 13 14:22:27 MDT 2001","","Wed Jun 13 14:22:27 MDT 2001","Wed Jun 13 14:22:27 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Jun 13 14:22:27 MDT 2001","Wed Jun 13 14:22:27 MDT 2001","","Wed Jun 13 14:29:09 MDT 2001","Wed Feb 7 16:02:15 MST 2001","Tue Jun 19 09:24:17 MDT 2001","Wed Feb 7 16:02:15 MST 2001","","Tue Jun 19 09:15:18 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 47-472 are 24% similar to fragment (residues 16-430) of PG0577, a predicted DNA damage-inducible protein. Similarities are also seen to PG1265, PG0742, PG1432.","Wed Jun 13 14:26:58 MDT 2001","","No significant hits to the PDB database (E-value < E-10).","","","Residues 55 to 214 (E-value = 1.3e-25) place PG0999 in the MatE family which is described as MatE (PF01554)Residues 281 to 442 (E-value = 3.4e-31) place PG0999 in the MatE family which is described as MatE (PF01554)","Tue Jun 19 09:15:18 MDT 2001","34540849","","","","","","1","","10","PG1117" "PG1000","1194767","1192179","2589","ATGAACATTAACAACTACACAATCAAATCGCAGGAGGCTCTACAGCAGGCTGTGGAGCTGACCCGTCGGCACGGACAGCAGGCCATCGAACCGCAGCACCTGCTCAAGGCCGTTATGGATCAGGGCGAAAGCCTGACCGATTTCCTTTTTGCCAAGATGGGGCTGAACAAGGGCAGTATCGCCACGGCTGTGGACAAACTGATAGAGAAACTGCCCCATGTATCGGGTGGCGAACCCTATCTGTCGCATGAGACCAATCAGGTGCTACAGGCAGCGGAGGACGCAGCGCACCGGATGAAGGACAAATACGTCTCTTTGGAGCACATCGTGCTGGCTATTCTGACTACGCGATGCGAGGCGTCCACTCTGCTCAAGGATGCCGGAGCCACCGAACAGCTTCTGCAGTCGGCCATCGAAGAGCTTCGGAAGGGGCGCAACGTGACCAGTCAGAGTGCGGAGGAACAGTACAATGCACTGGAGAAATATGCCGTCAATCTCTGTCAGCGTGCTCGCGATGGCAAGTTGGATCCCGTGATCGGTCGCGATGACGAGATCAGGCGAGTGCTGCAAATTCTCTCTCGACGCACCAAGAACAATCCTATCCTTATCGGTGAGCCGGGGGTGGGCAAGACGGCCATAGCCGAGGGCTTGGCTTACAGGATCGTGCGTGGCGACGTGCCGGAGAATCTGCGCAACAAGCAGATATTCTCTCTCGACATGGGTGCCTTGATCGCCGGAGCCAAATACAAAGGTGAATTCGAGGAAAGGCTGAAAGCCGTGGTAAACGAAGTGACCGGTGCCGAGGGGGAAATCATCCTTTTCATAGATGAGATCCACACCCTTGTCGGAGCCGGCAAGAGCGAAGGCGCGATGGACGCTGCCAACATACTGAAGCCGGCCCTGGCTCGGGGCGAACTCCGTGCCATCGGTGCCACCACGCTGGACGAATACCGCAAATACTTCGAGAAGGACAAGGCTCTGGAACGACGCTTCCAGATGGTGATGGTGGACGAGCCGGACGAGCTAAGCTCCATCTCCATCCTCCGGGGTTTGAAGGAGAAATACGAGAATCACCACAAAGTGCGGATCAAGGATGATGCCATCATTGCGGCCGTGAAGTTGTCGCACCGCTACATTACGGAGCGGTTCCTGCCCGACAAGGCCATCGACCTGATGGATGAGGCTGCGGCTCGTCTGCGTATGGAAGTGGATTCGCTGCCGGAGGAGCTGGACGAGATCTCGCGCAGGATCAAGCAACTTGAGATCGAACGCGAAGCCATCAAGCGAGAGAATGACGAAGAGAAGGTACAGTTCCTCGACAGGGAAATAGCCGAACTCAAGGAGAAAGAGGCCTCGGAGAAAGCCCAATGGCAGAACGAAAAAGATCGGATCAATCAGATTCAGCAGCTCAAGATAGATATAGAGGAGCTGAAGTTTCAGGCCGATCGTGCCGAACGGGAGGGCGATTACGGACGAGTGGCCGAGATACGCTACGGACTCATCAAGCAGAAAGAGACGGAGATCGACACGATACAGCAGCAGCTGCACGAATTGCAGCGTGGCGGCTCCATGATCAAGGAGGAAGTGGAGGCCGACGACATAGCCGACATCGTGTCGCGCTGGACGGGTATCCCCGTCAGCCGCATGCTCCAGAGCGAGCGCGACAAGCTGCTTCATCTGGAGGACGAGCTGCACAAGCGCGTGATCGGTCAGGACGAAGCCATCCGTGCCGTGGCCGATGCCGTCCGTCGCAGCCGGGCAGGCCTTCAGGATCCCAAGCGTCCGATCGGTTCGTTCATCTTCCTCGGTACTACGGGGGTGGGCAAGACGGAGTTGGCACGTGCCTTGGCCGAATTGCTCTTCGATGATGAGAGCATGCTTACGCGAATAGACATGAGCGAGTATCAGGAGAAGTTCAGTGCCACGCGTCTGATCGGTGCGCCTCCGGGGTATGTGGGCTATGACGAGGGTGGCCAATTGACGGAAGCCATTCGCCGCAAGCCTTATTCCGTGGTGCTTTTCGATGAAATAGAAAAAGCTCACCCGGATGTGTTCAACGTATTGCTGCAAGTCCTCGACGATGGCCGCCTGACCGACAACAAGGGGCATGTGGTAAACTTCAAGAATACGCTCATCATCATGACGTCGAACCTCGGTTCGGACATCATTCGCGAGCGGATGCAGAACCTCACGGCGGAGAATCGCCGGTCCCTCACGGCCCGGACGGCCGATGAGGTGATGCAGCTACTCAAGCATACGATCCGCCCCGAGTTTCTGAACCGTATCGACGAGACCATCGTCTTCACGCCACTGACCGAGAAGGAGATCTACGAGATCGTCCGCTTGCAGCTCGATGGTATCGTGCGCCAACTGGCCGATAACGACGTGGTGCTCCACTATACGGAGGCTGTCGTGACCTTTGCCGCTCGCGAGGGATATGATCCGCAGTTCGGAGCGCGTCCTGTGAAGCGAGTCCTGCAGCGATTCGTCCTCAACGAGCTGAGCAAGGCACTCTTGGCCGATACGGTGGACAGTACACGTCCCGTCCTCATCGATTGCATAGACGGATCAATCGTCTTCCGCAACGAA","5.20","-22.89","97762","MNINNYTIKSQEALQQAVELTRRHGQQAIEPQHLLKAVMDQGESLTDFLFAKMGLNKGSIATAVDKLIEKLPHVSGGEPYLSHETNQVLQAAEDAAHRMKDKYVSLEHIVLAILTTRCEASTLLKDAGATEQLLQSAIEELRKGRNVTSQSAEEQYNALEKYAVNLCQRARDGKLDPVIGRDDEIRRVLQILSRRTKNNPILIGEPGVGKTAIAEGLAYRIVRGDVPENLRNKQIFSLDMGALIAGAKYKGEFEERLKAVVNEVTGAEGEIILFIDEIHTLVGAGKSEGAMDAANILKPALARGELRAIGATTLDEYRKYFEKDKALERRFQMVMVDEPDELSSISILRGLKEKYENHHKVRIKDDAIIAAVKLSHRYITERFLPDKAIDLMDEAAARLRMEVDSLPEELDEISRRIKQLEIEREAIKRENDEEKVQFLDREIAELKEKEASEKAQWQNEKDRINQIQQLKIDIEELKFQADRAEREGDYGRVAEIRYGLIKQKETEIDTIQQQLHELQRGGSMIKEEVEADDIADIVSRWTGIPVSRMLQSERDKLLHLEDELHKRVIGQDEAIRAVADAVRRSRAGLQDPKRPIGSFIFLGTTGVGKTELARALAELLFDDESMLTRIDMSEYQEKFSATRLIGAPPGYVGYDEGGQLTEAIRRKPYSVVLFDEIEKAHPDVFNVLLQVLDDGRLTDNKGHVVNFKNTLIIMTSNLGSDIIRERMQNLTAENRRSLTARTADEVMQLLKHTIRPEFLNRIDETIVFTPLTEKEIYEIVRLQLDGIVRQLADNDVVLHYTEAVVTFAAREGYDPQFGARPVKRVLQRFVLNELSKALLADTVDSTRPVLIDCIDGSIVFRNE","putative ATP-dependent protease ClpB","See PG0009 for CLPC.TIGR ID: PG1118","heat shock protein ClpB","Cytoplasm","Numerous significant hits in gapped BLAST to ATP-dependent protease/heat shock protein ClpB; e.g., residues 4-860 are 54% similar to a ClpB protein of Synechocystis sp.(BAA18456.1), residues 1-860 are 55% similar to a ClpB protein of Thermus thermophilus (AB012390), residues 2-852 are 53% similar to a heat shock protein ClpB of Plectonema boryanum (AF061279), and residues 1-840 are 52% similar to a heat shock protein ClpB of Escherichia coli (AE000345).This sequence is similar to BT4597.","
InterPro
IPR001270
Family
Chaperonin clpA/B
PR00300\"[599-617]T\"[644-662]T\"[673-691]T\"[706-720]TCLPPROTEASEA
PS00870\"[292-304]TCLPAB_1
PS00871\"[629-647]TCLPAB_2
InterPro
IPR003593
Domain
AAA+ ATPase, core
SM00382\"[196-341]T\"[595-738]TAAA
InterPro
IPR003959
Domain
AAA ATPase, core
PF00004\"[199-393]TAAA
InterPro
IPR004176
Domain
Clp, N-terminal
PF02861\"[17-69]T\"[92-143]TClp_N
InterPro
IPR013093
Domain
ATPase AAA-2
PF07724\"[594-765]TAAA_2
noIPR
unintegrated
unintegrated
G3DSA:1.10.1780.10\"[1-145]TG3DSA:1.10.1780.10
G3DSA:1.10.8.60\"[771-860]TG3DSA:1.10.8.60
G3DSA:3.40.50.300\"[155-349]T\"[547-770]TG3DSA:3.40.50.300
PTHR11638\"[1-400]T\"[454-696]TPTHR11638
PTHR11638:SF18\"[1-400]T\"[454-696]TPTHR11638:SF18
SSF81923\"[4-154]TSSF81923


","BeTs to 14 clades of COG0542COG name: ATPases with chaperone activity, ATP-binding domainFunctional Class: OThe phylogenetic pattern of COG0542 is --t-YQVCEBRhUJgpOLINxNumber of proteins in this genome belonging to this COG is 2","***** IPB001270 (Chaperonins clpA/B) with a combined E-value of 3.8e-265. IPB001270A 184-216 IPB001270B 221-269 IPB001270C 271-285 IPB001270D 311-359 IPB001270E 529-583 IPB001270F 606-643 IPB001270G 644-679 IPB001270H 686-720 IPB001270I 754-768 IPB001270J 812-826***** IPB001939 (AAA-protein (ATPases associated with various cellular activities)) with a combined E-value of 6.4e-08. IPB001939B 197-218 IPB001939C 252-285","Residues 309-351 are 76% similar to a (PROTEASE PROTEIN HEAT SHOCK ATP-BINDING CHAPERONE REPEAT) protein domain (PD001382) which is seen in O68185_LACLC.Residues 387-564 are 45% similar to a (PROTEIN COILED COIL REPEAT FILAMENT HEPTAD PATTERN CHAIN) protein domain (PD000002) which is seen in CLPB_SYNY3.Residues 456-515 are 43% similar to a (PROTEIN HEAT SHOCK CLPB) protein domain (PD022004) which is seen in CLPB_CORGL.Residues 25-142 are 29% similar to a (PROTEASE HEAT SHOCK ATP-BINDING) protein domain (PD002024) which is seen in O53719_MYCTU.Residues 162-307 are 60% similar to a (PROTEASE ATP-DEPENDENT CLPC CLP SUBUNIT A CLPA ATPASE) protein domain (PD187342) which is seen in Q9Z8A6_BBBBB.Residues 352-386 are 68% similar to a (PROTEASE PROTEIN HEAT SHOCK ATP-BINDING CHAPERONE REPEAT) protein domain (PD186056) which is seen in O34209_SYNP7.Residues 1-142 are 34% similar to a (PROTEIN HEAT SHOCK CLPB) protein domain (PD120034) which is seen in CLPB_ECOLI.Residues 387-441 are 56% similar to a (PROTEASE ATP-BINDING CHAPERONE REPEAT PROTEIN HEAT SHOCK) protein domain (PD005402) which is seen in CLPB_SYNP7.Residues 529-843 are 75% similar to a (PROTEIN ATP-BINDING PROTEASE SUBUNIT REGULATORY HOMOLOG) protein domain (PD000092) which is seen in O87444_PLEBO.","","Wed Jun 13 14:14:17 MDT 2001","","Wed Jun 13 14:14:17 MDT 2001","Wed Jun 13 14:14:17 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Jun 13 14:14:17 MDT 2001","Wed Jun 13 14:14:17 MDT 2001","Fri Mar 10 10:54:18 MST 2000","Tue Jun 19 09:26:22 MDT 2001","Fri Mar 10 10:54:18 MST 2000","Mon Jan 5 15:11:57 2004","Thu Feb 22 14:30:35 MST 2001","Tue Jun 19 09:26:22 MDT 2001","Tue Jun 19 09:26:22 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 5-863 are 38% similar to PG0009, a predicted CLPC protein. ","Wed Jun 13 14:20:55 MDT 2001","Mon Jul 7 14:51:27 2008","-85% similar to PDB:1JBK Crystal Structure of the First Nucelotide Binding Domain of ClpB (E_value = 3.5E_75);-60% similar to PDB:1KSF Crystal Structure of ClpA, an HSP100 chaperone and regulator of ClpAP protease: Structural basis of differences in Function of the Two AAA+ ATPase domains (E_value = 8.1E_72);-60% similar to PDB:1R6B High resolution crystal structure of ClpA (E_value = 8.1E_72);-53% similar to PDB:1KHY The Crystal Structure of ClpB N Terminal Domain, Implication to the Peptide Binding Function of ClpB (E_value = 4.8E_16);","","","Residues 17 to 69 (E-value = 4.8e-09) place PG1000 in the Clp_N family which is described as Clp amino terminal domain (PF02861)Residues 92 to 143 (E-value = 5.7e-10) place PG1000 in the Clp_N family which is described as Clp amino terminal domain (PF02861)Residues 199 to 393 (E-value = 2.5e-14) place PG1000 in the AAA family which is described as ATPase family associated with various cellular activities (AAA) (PF00004)Residues 552 to 834 (E-value = 4.1e-06) place PG1000 in the Torsin family which is described as Torsin (PF06309)","Mon Jan 5 15:11:57 2004","34540850","","Yuan L, Rodrigues PH, Bélanger M, Dunn W Jr, Progulske-Fox A., The Porphyromonas gingivalis clpB gene is involved in cellular invasion in vitro and virulence in vivo., FEMS Immunol Med Microbiol. 2007 Nov;51(2):388-98. Epub 2007 Sep 14., PMID: 17854400Yuan L, Hillman JD, Progulske-Fox A., Microarray analysis of quorum-sensing-regulated genes in Porphyromonas gingivalis., Infect Immun. 2005 Jul;73(7):4146-54.PMID: 15972504","1. Gottesman,S., Squires,C., Pichersky,E., Carrington,M., Hobbs,M., Mattick,J.S., Dalrymple,B., Kuramitsu,H., Shiroza,T., Foster,T., Clark,W.P., Ross,B., Squires,C.L. and Maurizi,M.R. 1990. Conservation of the regulatory subunit for the Clp ATP-dependent protease in prokaryotes and eukaryotes. Proc. Natl. Acad. Sci. U.S.A. 87:3513-3517. PubMed: 21854732. Kitagawa,M., Wada,C., Yoshioka,S. and Yura,T. 1991. Expression of ClpB, an analog of the ATP-dependent protease regulatory subunit in Escherichia coli, is controlled by a heat hock sigma factor (sigma 32). J. Bacteriol. 173(14):4247-4253. PubMed: 1906060","Mon Jul 7 14:51:27 2008","Mon Jul 7 14:51:27 2008","1","","10","PG1118" "PG1001","1194986","1195543","558","ATGAAACTCAGAACATTAGTATTCGTGATCGTGGCTGCACTGGCAGTAGCGTTTAGCGCAGAAGCACAGAAGAAGACGGCGAAAAAACCGCTTATCGTCTATTACTCTCACAGTGGAAATACCCAAGCAGTGGCCGAACACATCCAAAAGGCTACCGGAGGCACACTCTTCCGCATAGAACCGGAGCAAGCCTACCCCGAAGACTACAAAGCCCTCGTCCAACAAGCCAAAGAGGAGCTGAAGAAAGGCTTTCGTCCCAAACTCAAAAAGTCCGTCAAGAACATAGCCGACTACGACGTTGTCTACATAGGTTCGCCCAACTGGATCCACACCTTGGCTCCTGCCGTAATGAGCTTTCTGGAGCAGCACAACCTCAAAGGCAAGACCATCATCCCCTTTGTCACACACGGCGGTGGTGGCATGGGCAAGTGTTTGGACGAAATGAAGCGACTGGCACCTCAAGCGACAATCCTCGACGGCATCGTTATCGACGGCAAGAAAGCCAAAGAATCGGCCGAAGAAGTCCACAACAGCCTGAAAGCGATGGGACAAATCAAA","10.30","10.39","20401","MKLRTLVFVIVAALAVAFSAEAQKKTAKKPLIVYYSHSGNTQAVAEHIQKATGGTLFRIEPEQAYPEDYKALVQQAKEELKKGFRPKLKKSVKNIADYDVVYIGSPNWIHTLAPAVMSFLEQHNLKGKTIIPFVTHGGGGMGKCLDEMKRLAPQATILDGIVIDGKKAKESAEEVHNSLKAMGQIK","hypothetical protein","TIGR ID: PG1119","hypothetical protein","Periplasm","Only one weak hit: residues 29-148 are 25% similar to an unknown protein of Methanobacterium thermoautotrophicum (AE000861).","
InterPro
IPR001226
Domain
Flavodoxin, N-terminal
PS00201\"[32-48]TFLAVODOXIN
InterPro
IPR008254
Domain
Flavodoxin/nitric oxide synthase
PF00258\"[32-50]TFlavodoxin_1
PS50902\"[30-186]TFLAVODOXIN_LIKE
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.360\"[30-185]TG3DSA:3.40.50.360
SSF52218\"[28-182]TSSF52218


","No hit to the COGs database.","***** IPB001226 (Flavodoxin) with a combined E-value of 7.1e-08. IPB001226A 32-48 IPB001226B 98-108","No significant hit to the ProDom database.","","Wed Jun 13 14:11:41 MDT 2001","","Wed Jun 13 14:11:41 MDT 2001","Wed Jun 13 14:11:41 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Jun 13 14:11:41 MDT 2001","Wed Jun 13 14:11:41 MDT 2001","Fri Mar 10 11:12:04 MST 2000","","Fri Mar 10 11:12:04 MST 2000","Tue Jun 19 09:39:56 MDT 2001","Wed Jun 13 14:11:41 MDT 2001","Tue Jun 19 09:33:50 MDT 2001","Fri Mar 10 11:12:04 MST 2000","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Fri Mar 10 11:12:04 MST 2000","Fri Mar 10 11:12:04 MST 2000","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Jun 19 09:33:50 MDT 2001","34540851","","","","","","1","","10","PG1119" "PG1002","1197648","1196242","1407","ATGGATAAGAAGATGAAAAGGACTAGAATCGCAGATGCCCTCCATGGAGGGCTTGTCGGCCAAGAAATCAACATCAAAGGATGGGTACGCACCAAGCGCGGCAACAAGGCTGTGAATTTTATCGCTCTCAATGATGGTTCTACGATTCATAATATGCAGATCGTAGCGGATCTTGCTTCTTTCGATGCTGCACAGATGTCTCAGATTACCACGGGTGCTTGCATCGGTGTTATAGGCACTTTGGTCGAATCTCAGGGAGCAGGCCAGTCCGTGGAGGTACAAGCGTCGGCTATCGAGATTTATGGTACGGCTGATCCGGCTACCTATCCGCTACAGAAGAAAGGCCATACGTTGGAGTTTTTGCGTGAGATAGCGCATTTGCGCCCGCGCACTAATACCTTCGGTGCCATCTATCGCATCCGGCACCATATGGCTATTGCCATCCATACCTTTTTTCATAACAAAGGGTATTACTACTTCCATGCACCTCTTATTACAGCCAGTGACTGTGAAGGAGCCGGACAGATGTTTCAGGTGACAACGCTGAACCCTGATTCTCTCCCCCGAACAGAAGAGGGACAAGTGGACTATCGTAAAGATTTCTTCGGTCGTCATACCTCATTGACCGTTTCGGGACAATTGGAGGGTGAAATGGCTGCTATGGCTTTGGGCGGTATTTATACTTTCGGGCCTACATTCCGTGCAGAAAATTCCAATACACCGCGTCACTTGGCCGAGTTCTGGATGATCGAACCGGAGGTTGCATTCCTTGAGATAGAGGATAACATGGACTTGGCGGAAGAGTTCATCAAATATTGTGTGCAGTGGGCCTTGGATAACTGTATGGATGACATCAGTTTCCTTTCTGAACACTTCGACAAAGAGCTGATCGATCGTCTCAAGTTTGTACTCGAAAAGCCATTTGTTCGTTTGGCCTATACGGAAGGTATTCGTATCCTGGAAGAAGCAGTCAAGAATGGTGTAAAATTTGAATTCCCCATCTATTGGGGAGCAGATTTGGCCAGCGAACACGAGCGTTATCTGGTTGAGGTGCATTTCAAGACACCGGTTATCATGACAGACTACCCCAAAGAGATCAAGAGTTTCTACATGAAGCTGAACGATGACGGAAAGACTGTCCGTGGCATGGATGTGCTTTTCCCGAAGATCGGAGAAATCATCGGTGGCTCCGAACGTGAAGCCGACTACGACAAATTGGTGGCTCGTGCTAACGAAATGGGAGTGCCGGAGAAAGATATTTGGTGGTACCTCGACTCGCGTCGTTACGGTACTGCACCGCATAGTGGCTTTGGTTTGGGCTTCGAACGCCTGCTTCTATTCGTAACGGGAATGAGTAATATCCGAGATGTAATTCCTTTCCCACGGACACCCAACAACGCAGAGTTT","5.80","-10.53","53062","MDKKMKRTRIADALHGGLVGQEINIKGWVRTKRGNKAVNFIALNDGSTIHNMQIVADLASFDAAQMSQITTGACIGVIGTLVESQGAGQSVEVQASAIEIYGTADPATYPLQKKGHTLEFLREIAHLRPRTNTFGAIYRIRHHMAIAIHTFFHNKGYYYFHAPLITASDCEGAGQMFQVTTLNPDSLPRTEEGQVDYRKDFFGRHTSLTVSGQLEGEMAAMALGGIYTFGPTFRAENSNTPRHLAEFWMIEPEVAFLEIEDNMDLAEEFIKYCVQWALDNCMDDISFLSEHFDKELIDRLKFVLEKPFVRLAYTEGIRILEEAVKNGVKFEFPIYWGADLASEHERYLVEVHFKTPVIMTDYPKEIKSFYMKLNDDGKTVRGMDVLFPKIGEIIGGSEREADYDKLVARANEMGVPEKDIWWYLDSRRYGTAPHSGFGLGFERLLLFVTGMSNIRDVIPFPRTPNNAEF","Asparaginyl-tRNA synthetase","Asparaginyl-tRNA synthetase catalyzes the formation of L-asparaginyl-tRNA using ATP, L-asparagine, and the cognate tRNA during protein biosynthesis. It exists in cytoplasm as a homodimer and belongs to Class-II aminoacyl-tRNA synthetase family.TIGR ID: PG1121","asparaginyl-tRNA synthetase (asparagine--tRNA ligase)","Cytoplasm","Numerous significant hits in gapped BLAST to asparaginyl-tRNA synthetases; e.g., residues 5-469 are 53% similar to an asparaginyl-tRNA synthetase of Synechocystis sp.(D64006), residues 10-469 are 53% similar to E. coli asparaginyl-tRNA synthetase (AE000195), and residues 10-469 are 50% similar to Borrelia burgdorferi asparaginyl-tRNA synthetase (AE001123).This sequence is similar to BT3873.","
InterPro
IPR002312
Family
Aspartyl-tRNA synthetase, class IIb
PR01042\"[208-220]T\"[224-237]T\"[384-400]T\"[424-438]TTRNASYNTHASP
InterPro
IPR004364
Domain
tRNA synthetase, class II (D, K and N)
PF00152\"[117-465]TtRNA-synt_2
InterPro
IPR004365
Domain
Nucleic acid binding, OB-fold, tRNA/helicase-type
PF01336\"[23-101]TtRNA_anti
InterPro
IPR004522
Family
Asparaginyl-tRNA synthetase, class IIb
TIGR00457\"[7-469]TasnS
InterPro
IPR006195
Domain
Aminoacyl-transfer RNA synthetase, class II
PS50862\"[138-459]TAA_TRNA_LIGASE_II
InterPro
IPR012340
Domain
Nucleic acid-binding, OB-fold
G3DSA:2.40.50.140\"[5-107]TOB_NA_bd_sub
noIPR
unintegrated
unintegrated
G3DSA:3.30.930.10\"[107-469]TG3DSA:3.30.930.10
PTHR22594\"[89-177]T\"[196-465]TPTHR22594
PTHR22594:SF6\"[89-177]T\"[196-465]TPTHR22594:SF6
SSF50249\"[5-105]TNucleic_acid_OB
SSF55681\"[117-465]TSSF55681


","BeTs to 11 clades of COG0017COG name: Aspartyl/asparaginyl-tRNA synthetasesFunctional Class: JThe phylogenetic pattern of COG0017 is amtKY--ceb-h--gpol---Number of proteins in this genome belonging to this COG is 1","***** PR01042 (Aspartyl-tRNA synthetase signature) with a combined E-value of 8.1e-27. PR01042A 208-220 PR01042B 224-237 PR01042C 384-400 PR01042D 424-438","Residues 311-431 are 64% similar to a (SYNTHETASE AMINOACYL-TRNA LIGASE PROTEIN) protein domain (PD110921) which is seen in SYN_SYNY3.Residues 203-256 are 74% similar to a (SYNTHETASE AMINOACYL-TRNA PROTEIN LIGASE BIOSYNTHESIS) protein domain (PD000871) which is seen in SYN_TREPA.Residues 23-181 are 32% similar to a (ASPARAGINYL-TRNA SYNTHETASE,) protein domain (PD110936) which is seen in SYNM_YEAST.Residues 40-173 are 54% similar to a (SYNTHETASE AMINOACYL-TRNA PROTEIN LIGASE BIOSYNTHESIS) protein domain (PD002022) which is seen in SYN_SYNY3.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","Fri Mar 10 11:58:00 MST 2000","Sat Jan 3 09:56:53 2004","Thu May 17 12:19:56 MDT 2001","Sat Jan 3 09:56:53 2004","Thu Feb 22 19:13:20 MST 2001","Thu Feb 22 19:13:20 MST 2001","Thu Feb 22 19:13:20 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","None","Fri Mar 10 11:38:44 MST 2000","Mon Mar 13 09:14:08 MST 2000","-47% similar to PDB:1X54 Crystal structure of asparaginyl-tRNA synthetase from Pyrococcus horikoshii complexed with asparaginyl-adenylate (E_value = 4.0E_51);-47% similar to PDB:1X55 Crystal structure of asparaginyl-tRNA synthetase from Pyrococcus horikoshii complexed with asparaginyl-adenylate analogue (E_value = 4.0E_51);-47% similar to PDB:1X56 Crystal structure of asparaginyl-tRNA synthetase from Pyrococcus horikoshii (E_value = 4.0E_51);-43% similar to PDB:1B8A ASPARTYL-TRNA SYNTHETASE (E_value = 1.2E_36);-42% similar to PDB:1WYD Crystal Structure of Aspartyl-tRNA synthetase from Sulfolobus tokodaii (E_value = 2.3E_30);","","","Residues 23 to 101 (E-value = 1.9e-11) place PG1002 in the tRNA_anti family which is described as OB-fold nucleic acid binding domain (PF01336)Residues 117 to 465 (E-value = 5.2e-117) place PG1002 in the tRNA-synt_2 family which is described as tRNA synthetases class II (D, K and N) (PF00152)","Sat Jan 3 09:56:53 2004","34540852","","","1. Anselme,J. and Hartlein,M. 1991. Tyr-426 of the Escherichia coli asparaginyl-tRNA synthetase, an amino acid in a C-terminal conserved motif, is involved in ATP binding. FEBS Lett. 280(1):163-166. PubMed: 2009959 2. Madern,D., Anselme,J. and Hartlein,M. 1992. Asparaginyl-tRNA synthetase from the Escherichia coli temperature-sensitive strain HO202. A proline replacement in motif 2 is responsible for a large increase in Km for asparagine and ATP. FEBS Lett. 299(1):85-89. PubMed: 1544480","","Mon Mar 13 09:13:19 MST 2000","1","","","PG1121" "PG1003","1198435","1197683","753","GTGCCAGTAAAGTATCGTGAGGTACTGGCCGATCCGAATGAGCCGATCAGACTGAACAAGTTCTTGAGCAATGCCGGTGTTTGCTCGCGAAGGGAAGCGGATCTGCTGATCGAAAAGGGAGAGATCACGGTCAATGGAGAAGTCGTGACCGAACTCGGTAGAAGAATTACACGTCAGGATGAGGTAATCTACAAGGATAAGAGAGTGGAAATAGAGAGTAAAGTTTATGTACTGCTCAATAAGCCTAAAAATTGTGTGACCACTTCTGATGACCCCGAATGCCGTACCACAGTAATGGATATAGTACGATATGCCTGTCCTGAGAGAATATATCCGGTAGGACGTTTGGATCGGAATACTACCGGTGTACTTCTGATTACAAATGATGGCGATCTTGCCTCTAAGCTGACCCATCCGTCTTTCAAGAAGAAGAAGATCTACCACGTGTGGCTCAATAAAGATGTAAGCATTGAAGACATGCAGAAAATAGCCGACGGCGTGGAATTGGATGATGGTGAGATACATGCCGATGCCATCAGTTACGTAAAAGAAGACGATCTTTCGCAGGTGGGAATAGAGATTCATAGCGGACGAAATCGTATTGTGCGCCGTTTGTTTGAACACCTTGGCTATCGTGTTGTCAAACTGGATCGCGTTTATTTTGCCGGACTGACCAAGAAGAATCTGCCCCGTGGAAAATGGCGCTATCTGAATGAACAGGAGGTAAATAACCTTAGAATGGGAGCTTTCGAA","8.20","3.03","28871","VPVKYREVLADPNEPIRLNKFLSNAGVCSRREADLLIEKGEITVNGEVVTELGRRITRQDEVIYKDKRVEIESKVYVLLNKPKNCVTTSDDPECRTTVMDIVRYACPERIYPVGRLDRNTTGVLLITNDGDLASKLTHPSFKKKKIYHVWLNKDVSIEDMQKIADGVELDDGEIHADAISYVKEDDLSQVGIEIHSGRNRIVRRLFEHLGYRVVKLDRVYFAGLTKKNLPRGKWRYLNEQEVNNLRMGAFE","","This protein catalyzes the biosynthesis of pseudouridine 5'-phosphate in 16S and 23S rRNA from uracil and D-ribose 5-phosphate. In E. coli, ribosomal RNA contains 10 pseudouridines, one in the 16S RNA and nine in the 23S RNA. This protein belongs to family 1 of pseudouridine synthases. There are multiple synthases responsible for pseudouridine biosynthesis.TIGR ID: PG1122","pseudouridine synthase B (pseudouridylate synthase) (uracil hydrolyase)","Cytoplasm","Numerous significant hits in gapped BLAST to pseudouridine synthases and hypothetical proteins; e.g., residues 17-237 are 40% similar to residues 3-225 of ribosomal large subunit pseudouridine synthase B, residues 16-245 are 38% similar to a hypothetical protein (AE000741) of Aquifex aeolicus, and residues 17-245 are 37% similar to a putative pseudouridine synthase (AL109848) of Streptomyces coelicolor A3.This sequence is similar to BT3872.","
InterPro
IPR000748
Domain
Pseudouridine synthase, Rsu
TIGR00093\"[80-239]TTIGR00093: conserved hypothetical protein
PS01149\"[114-128]TPSI_RSU
InterPro
IPR002942
Domain
RNA-binding S4
PF01479\"[16-62]TS4
SM00363\"[16-77]TS4
PS50889\"[16-82]TS4
InterPro
IPR006145
Domain
Pseudouridine synthase
PF00849\"[75-208]TPseudoU_synth_2
noIPR
unintegrated
unintegrated
G3DSA:3.10.290.10\"[13-73]Tno description
PTHR21600\"[20-246]TRIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE B
PTHR21600:SF2\"[20-246]TRIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE B


","BeTs to 11 clades of COG1187COG name: Predicted pseudouridylate synthase family 1Functional Class: JThe phylogenetic pattern of COG1187 is -----QvCEBrHuj--olinxNumber of proteins in this genome belonging to this COG is 2","***** IPB000748 (Pseudouridine synthase, Rsu family) with a combined E-value of 2.3e-50. IPB000748A 17-42 IPB000748B 80-95 IPB000748C 113-147 IPB000748D 192-226","Residues 108-145 are 57% similar to a (PROTEIN PSEUDOURIDINE SYNTHASE INTERGENIC) protein domain (PD033985) which is seen in YE64_AQUAE.Residues 17-82 are 49% similar to a (PROTEIN PSEUDOURIDINE SYNTHASE RIBOSOMAL) protein domain (PD004022) which is seen in YE64_AQUAE.","","Wed Jun 13 14:07:04 MDT 2001","","Wed Jun 13 14:07:04 MDT 2001","Wed Jun 13 14:07:04 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Jun 13 14:07:04 MDT 2001","Wed Jun 13 14:07:04 MDT 2001","Thu Feb 22 14:49:24 MST 2001","Sat Jan 3 09:55:16 2004","Wed Apr 18 13:46:13 MDT 2001","Sat Jan 3 09:55:16 2004","Thu Feb 22 14:40:38 MST 2001","Tue Jun 19 09:41:37 MDT 2001","Tue Jun 19 09:41:37 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Mon Mar 13 09:26:18 MST 2000","Mon Mar 13 09:26:18 MST 2000","-53% similar to PDB:1VIO Crystal structure of pseudouridylate synthase (E_value = 3.1E_24);-54% similar to PDB:1KSK STRUCTURE OF RSUA (E_value = 2.3E_22);-54% similar to PDB:1KSL STRUCTURE OF RSUA (E_value = 2.3E_22);-54% similar to PDB:1KSV STRUCTURE OF RSUA (E_value = 2.3E_22);-58% similar to PDB:2GML Crystal Structure of Catalytic Domain of E.coli RluF (E_value = 1.6E_20);","","","Residues 16 to 62 (E-value = 1.9e-13) place PG1003 in the S4 family which is described as S4 domain (PF01479)Residues 75 to 208 (E-value = 4.6e-11) place PG1003 in the PseudoU_synth_2 family which is described as RNA pseudouridylate synthase (PF00849)","Sat Jan 3 09:55:16 2004","","","","Conrad,J., Sun,D., Englund,N. and Ofengand,J. 1998. The rluC gene of Escherichia coli codes for a pseudouridine synthase that is solely responsible for synthesis of pseudouridine at positions 955, 2504, and 2580 in 23 S ribosomal RNA. J. Biol. Chem. 273(29):18562-18566. PubMed: 9660827","","Mon Mar 13 10:12:47 MST 2000","1","","","PG1122" "PG1003.1","1198845","1199123","279","TTGGATGTAGCCCCTACTCTGGGAGTAGGTCTGAAACCTCCGCCTGAACTCATTCTTGACGAACGGAAAGGCGTAGGTTTTTCTATGTGCTTTTCCGAAGGAGAAATATCATCCTTGCTCGTATCTGCGAAAATATCGCGTTCTTCAGTTGTCATCTTTGATAGATTATTGCTTAGATTTTACACATACAACCTCACGGTTGCAAACTATGGATTTGTCTTTTTTGACTCTTTGGGTTACGAAAGTATGAAAATTTCAGATTCCCACGTAATTAGAAGG","","","10364","LDVAPTLGVGLKPPPELILDERKGVGFSMCFSEGEISSLLVSAKISRSSVVIFDRLLLRFYTYNLTVANYGFVFFDSLGYESMKISDSHVIRR","","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No hits in gapped BLAST.","
noIPR
unintegrated
unintegrated
tmhmm\"[60-80]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Wed Feb 7 16:08:02 MST 2001","Wed Feb 7 16:08:02 MST 2001","Wed Feb 7 16:08:02 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG1004","1200443","1199103","1341","ATGATTGCTTTCCAAGCCCTGCAAGCCATCTCTCCGATAGATGGCCGGTATCGCAACAAAGTAGAAGTACTTAGTCGCTATTTTTCAGAAGGATCTCTAATTCGCTATCGTGTAAAAGTGGAGGTGGAGTATTTCATCGCTCTTTGCAATGAATTGCCTTCGCTGAAAGATGTGTGCCCTCCATCTTTAGAGGAAGAGTTGCGCCGTATATACCAAGACTTTAGCGAGAAGGATGCCGTACGTGTAAAGGAAATAGAGGCGGTAACGAATCATGACGTCAAGGCTGTGGAGTATTTCCTCAAAGAGCGGTTCGAGGCCATGGGGATACGAGATGCCAAAGAATTTATCCATTTCGGTCTGACCTCGCAGGATGTAAACAATACGGCTTTCCCGATGATGATACGCGAGGCAATGACCGAGGTTTACTTGCCCGCTTTACAGGAGCTGGTGGAGCAGCTTCATGCTTATGCCCTTCAGTGGAAAGATGTCCCGATGCTGGCCAAAACGCATGGACAGCCGGCGTCGCCCACTCGCTTAGGAAAGGAAATAGAAGTATTCGTCTATCGCTTGCGCAAGCAGATCGACTTGCTGCTGGAAGTACCTCATTCAGCCAAATTCGGTGGTGCTACGGGCAATTTCAATGCGCATCATGTGGCTTATCCTGATCATGACTGGAGCGATTTCGGCCGTCGGTTTGTAACTTCTCTCGGGCTTGAACGGGAAGAACTCACTACACAAATATCCAACTACGACAACATGGCAGCCTTATTTGATGCCTGCTGTCGCATCAATGTGATACTGATCGACCTCTGCCGTGATTTCTGGCAGTACATTTCGATGGAGTACTTCAAACAGAAGATCAAGGCCGGCGAGGTCGGTTCTTCTGCCATGCCACATAAAGTGAATCCGATCGACTATGAAAATGCCGAAGGCAATCTGGGTATTGCGAATGCCATATTTGAGCATTTGTCGCGCAAATTGCCTATTTCCCGCTTGCAGCGAGATCTGACGGATTCCACTGTACTTCGTAACGTGGGAACTCCTTTGGCGCATTCTCTCATAGCAGTCACGAGCATAGCCAAAGGGCTTGGCAAACTGCTTCTCAACGAAGCTGCTCTCGATCGGGATTTGCAGAACAACTATGCTGTGGTGGCTGAGGCTATACAAACTATTCTTCGTAGAGAAGGGTATCCCAATCCATACGAAACGTTGAAGGCTCTGACGCGTACGAATGAGACGGTGACAGCCGAATCCATTGCAAGTTTTATCGAAGCATTGGATATTGATGAAACCGTGAAGGAGGAAATGCGCCGCATATCACCTTCTAATTACGTGGGAATC","5.60","-9.54","50820","MIAFQALQAISPIDGRYRNKVEVLSRYFSEGSLIRYRVKVEVEYFIALCNELPSLKDVCPPSLEEELRRIYQDFSEKDAVRVKEIEAVTNHDVKAVEYFLKERFEAMGIRDAKEFIHFGLTSQDVNNTAFPMMIREAMTEVYLPALQELVEQLHAYALQWKDVPMLAKTHGQPASPTRLGKEIEVFVYRLRKQIDLLLEVPHSAKFGGATGNFNAHHVAYPDHDWSDFGRRFVTSLGLEREELTTQISNYDNMAALFDACCRINVILIDLCRDFWQYISMEYFKQKIKAGEVGSSAMPHKVNPIDYENAEGNLGIANAIFEHLSRKLPISRLQRDLTDSTVLRNVGTPLAHSLIAVTSIAKGLGKLLLNEAALDRDLQNNYAVVAEAIQTILRREGYPNPYETLKALTRTNETVTAESIASFIEALDIDETVKEEMRRISPSNYVGI","Adenylosuccinate lyase","It catlyze one f the eight steps in de novo purine biosynthesis (1-(5-PHOSPHORIBOSYL)-4-(N-SUCCINO-CARBOXAMIDE)-5-AMINOIMIDAZOLE = FUMARATE + 5'-PHOSPHORIBOSYL-5-AMINO-4-IMIDAZOLECARBOXAMIDE). It belongs to lyase I family and adenylossucinate lyase subfamily.TIGR ID: PG1123","adenylosuccinate lyase","Cytoplasm","Numerous significant hits in gapped BLAST to adenylosuccinate lyases; e.g., to BT3871.","
InterPro
IPR000362
Domain
Fumarate lyase
PF00206\"[67-320]TLyase_1
PS00163\"[293-302]TFUMARATE_LYASES
InterPro
IPR004769
Family
Adenylosuccinate lyase
TIGR00928\"[13-447]TpurB
InterPro
IPR008948
Domain
L-Aspartase-like
SSF48557\"[1-447]TL-Aspartase-like
InterPro
IPR013539
Domain
Adenylosuccinate lyase C-terminal
PF08328\"[330-445]TASL_C
noIPR
unintegrated
unintegrated
G3DSA:1.20.200.10\"[119-409]TG3DSA:1.20.200.10
PTHR11444\"[5-446]TPTHR11444
PTHR11444:SF2\"[5-446]TPTHR11444:SF2


","BeTs to 12 clades of COG0015COG name: Adenylosuccinate lyaseFunctional Class: FThe phylogenetic pattern of COG0015 is amtkyqvcebrhuj-------Number of proteins in this genome belonging to this COG is 1","***** IPB000362 (Fumarate lyase) with a combined E-value of 3.8e-12. IPB000362A 167-180 IPB000362B 293-303","Residues 165-446 are 51% similar to a (LYASE BIOSYNTHESIS ARGININOSUCCINATE FUMARATE HYDRATASE) protein domain (PD000660) which is seen in PUR8_HAEIN.Residues 70-164 are 47% similar to a (LYASE ADENYLOSUCCINATE ADENYLOSUCCINASE) protein domain (PD002788) which is seen in PUR8_ECOLI.Residues 165-238 are 52% similar to a (ADENYLOSUCCINATE LYASE - LIKE) protein domain (PD128429) which is seen in O49514_ARATH.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","Mon Mar 13 14:21:37 MST 2000","Sat Jan 3 09:53:26 2004","Mon Mar 12 09:06:56 MST 2001","Sat Jan 3 09:53:26 2004","Tue Jan 7 14:26:46 2003","Mon Mar 12 09:06:56 MST 2001","Mon Mar 12 09:06:56 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Mon Mar 13 14:21:37 MST 2000","Mon Mar 13 14:29:13 MST 2000","-62% similar to PDB:2HVG Crystal Structure of Adenylosuccinate Lyase from Plasmodium Vivax (E_value = 7.7E_97);-46% similar to PDB:1DOF THE CRYSTAL STRUCTURE OF ADENYLOSUCCINATE LYASE FROM PYROBACULUM AEROPHILUM: INSIGHTS INTO THERMAL STABILITY AND HUMAN PATHOLOGY (E_value = 1.8E_21);-45% similar to PDB:1C3C T. MARITIMA ADENYLOSUCCINATE LYASE (E_value = 3.4E_20);-45% similar to PDB:1C3U T. MARITIMA ADENYLOSUCCINATE LYASE (E_value = 3.4E_20);-48% similar to PDB:1F1O STRUCTURAL STUDIES OF ADENYLOSUCCINATE LYASES (E_value = 1.4E_18);","","","Residues 15 to 320 (E-value = 8.4e-42) place PG1004 in the Lyase_1 family which is described as Lyase (PF00206)","Mon Mar 12 09:06:56 MST 2001","34540853","","","1. He,B., Smith,J.M. and Zalkin,H. 1992. Escherichia coli purB gene: cloning, nucleotide sequence, and regulation by purR. J. Bacteriol. 174(1):130-136. PubMed: 17292052. Blattner,F.R., Plunkett,G.I.I.I., Bloch,C.A., Perna,N.T., Burland,V., Riley,M., Collado-Vides,J., Glasner,F.D., Rode,C.K.,Mayhew,G.F., Gregor,J., Davis,N.W., Kirkpatrick,H.A., Goeden,M.A.,Rose,D.J., Mau,B. and Shao,Y. 1997. The complete genome sequence of Escherichia coli K-12. Science 277(5331):1453-1474. PubMed: 9278503","","Mon Mar 13 14:21:37 MST 2000","1","","","PG1123" "PG1005","1201129","1200581","549","ATGATATACACCCGTACGGGTGACAAGGGAACGACCAGCTTGGTCGGGGGAGAACGTGTACCCAAATACCACCAAAGACTTGAGTGCTACGGTACGATAGACGAATTGAACTCATTTATCGGCTTGCTGATGAGTGAGGACTTGCCGGAAGAGGATCGGGATTTTCTGCGTACCATACAGCACAAGCTTTTCACCGTCGGATCCTATCTGGCCACAAATCAGGAGAGCAGAGAGCTGATGGTGGAGAGTCGAGTGCATCCCGAAACGATAGAACGTGTGGAGCAGGAAATAGATCGTTTGGACAATGCCATTCCCAAGATGACGGCTTTCATCTTGCCGGGGGGTAGCCGTTCTGCCTCTTTGGCGCATGTTTGCCGTACGGTATGCCGGCGAGCCGAACGTCATATATACCGCTTGAGTGAAGAGGCGCTGGTAGAGGAGCCTGTGATGCGCTATATCAATCGTCTGAGCGATTATTTCTTTGCTCTGGCTCGAAAAGAAGTTTGGCGTACGACCGGAGGTGAAATTATTTGGGATAAGACCTGCGAT","5.70","-3.97","21189","MIYTRTGDKGTTSLVGGERVPKYHQRLECYGTIDELNSFIGLLMSEDLPEEDRDFLRTIQHKLFTVGSYLATNQESRELMVESRVHPETIERVEQEIDRLDNAIPKMTAFILPGGSRSASLAHVCRTVCRRAERHIYRLSEEALVEEPVMRYINRLSDYFFALARKEVWRTTGGEIIWDKTCD","conserved hypothetical protein","TIGR ID: PG1124","conserved hypothetical protein","Cytoplasm","Numerous significant hits in gapped BLAST to hypothetical proteins; e.g., residues 2-181 are 45% similar to a hypothetical protein (Z99121) of Bacillus subtilis, residues 2-167 are 42% similar to an unknown protein of Clostridium pasteurianum, and residues 2-178 are 39% similar to a conserved hypothetical protein (AE002007) of Deinococcus radiodurans.","
InterPro
IPR002779
Domain
Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase
PD007457\"[48-167]TDUF80
PF01923\"[2-169]TCob_adeno_trans
TIGR00636\"[3-179]TPduO_Nterm
InterPro
IPR012228
Family
Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, PduO-type
PIRSF015651\"[2-182]TATR_monof_PduO
noIPR
unintegrated
unintegrated
G3DSA:1.20.1200.10\"[22-179]TG3DSA:1.20.1200.10
PTHR12213\"[2-180]TPTHR12213
SSF89028\"[2-180]TSSF89028


","BeTs to 4 clades of COG2096COG name: Uncharacterized ACRFunctional Class: SThe phylogenetic pattern of COG2096 is a--k-----br----------Number of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","Residues 8-161 are 46% similar to a (PROTEIN CONSERVED DHAR-DHAT INTERGENIC) protein domain (PD007457) which is seen in O34899_BACSU.","","Wed Jun 13 14:02:10 MDT 2001","","Wed Jun 13 14:02:10 MDT 2001","Wed Jun 13 14:02:10 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Jun 13 14:02:10 MDT 2001","Wed Jun 13 14:02:10 MDT 2001","Mon Mar 13 14:41:46 MST 2000","","Mon Jan 8 14:59:13 2001","Wed Jun 13 14:05:00 MDT 2001","Mon Jan 8 14:59:13 2001","Mon Mar 13 14:41:46 MST 2000","Tue Jun 19 09:51:21 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1-180 are 40% similar to PG1039, a conserved hypothetical protein.","Wed Jun 13 14:06:05 MDT 2001","Mon Mar 13 14:41:46 MST 2000","-61% similar to PDB:1RTY Crystal Structure of Bacillus subtilis YvqK, a putative ATP-binding Cobalamin Adenosyltransferase, The North East Structural Genomics Target SR128 (E_value = 1.2E_34);-65% similar to PDB:2AH6 Crystal structure of hypothetical protein (10174212) from BACILLUS HALODURANS at 1.60 A resolution (E_value = 2.2E_33);-57% similar to PDB:2IDX Structure of Human ATP:Cobalamin adenosyltransferase bound to ATP. (E_value = 1.4E_27);-57% similar to PDB:2NT8 ATP bound at the active site of a PduO type ATP:co(I)rrinoid adenosyltransferase from Lactobacillus reuteri (E_value = 5.3E_27);-52% similar to PDB:2G2D Crystal structure of a putative pduO-type ATP:cobalamin adenosyltransferase from Mycobacterium tuberculosis (E_value = 2.1E_23);","","","Residues 2 to 169 (E-value = 3.3e-75) place PG1005 in the Cob_adeno_trans family which is described as Cobalamin adenosyltransferase (PF01923)","Tue Jun 19 09:51:21 MDT 2001","34540854","","","","","","1","","","PG1124" "PG1006","1201820","1201167","654","TTGTCAATGTCTTGTCTCTCCTCTTCATTCCTATCTGTCAGCGATAGAGTGCACTTGCATGCATTGCGCTTTGTTCGCTATCTGCTGCATCGTGGAGGACACCATGTTCACTCTCCTTATGTGTTTCACCTGCTGACACGGGTGGTGGAGGAAAAGACACCGTATTACAGTTTTGACCGTCTTGCTTCCGAGACAGAAGAACTTCGGGAGTCAGCCGATTATCGGGGAATTCGCCGCCGTAAGGTACTGGAGCTGATCTTTCGCCTGACGATCTTCAGTAGTGCGAAGCGAGCAATATGTATCTCCCCGGGCGATTCCGTACTGCCGAAATATCTCTTTGCAGCACGGCCGGGAATAGAGTTTTCGGCTGAAAATGACGATAGGCTGATAACGGACTCGAAGCAGGCTGATCCGCTACTTGTCGTAGTGGAAAGGGATACTCCTCTGCCGGCTTTTATTCGACAATGTTTGTCCGGCTCTTTGCCGGATGGCTCTATGGTGATTTTGTACTGTCCTCGTCGCAGGGGTGCGGTTTTTCGCCTATGGCAAGAGCTTGGCAAGAATCCTGCTGCACGGGTTTCGATCGATATGGGCGAACTGCTGATCGTAATTTTTCATCGTGGACTGAACAAGCGGAGCTATAAAGCGTTTCTA","10.40","10.73","24919","LSMSCLSSSFLSVSDRVHLHALRFVRYLLHRGGHHVHSPYVFHLLTRVVEEKTPYYSFDRLASETEELRESADYRGIRRRKVLELIFRLTIFSSAKRAICISPGDSVLPKYLFAARPGIEFSAENDDRLITDSKQADPLLVVVERDTPLPAFIRQCLSGSLPDGSMVILYCPRRRGAVFRLWQELGKNPAARVSIDMGELLIVIFHRGLNKRSYKAFL","hypothetical protein","TIGR ID: PG1125","hypothetical protein","Cytoplasm","No significant hits in gapped BLAST to other known proteins.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","Mon Mar 13 15:00:37 MST 2000","","Mon Mar 13 15:00:37 MST 2000","Mon Mar 13 14:59:52 MST 2000","Thu Apr 5 19:13:23 MDT 2001","Mon Mar 13 14:59:52 MST 2000","Mon Mar 13 14:59:52 MST 2000","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Mon Mar 13 14:59:52 MST 2000","Mon Mar 13 14:59:52 MST 2000","-39% similar to PDB:1L2L Crystal structure of ADP-dependent glucokinase from a Pyrococcus Horikoshii (E_value = );-45% similar to PDB:1KV3 HUMAN TISSUE TRANSGLUTAMINASE IN GDP BOUND FORM (E_value = );-47% similar to PDB:2BFD REACTIVITY MODULATION OF HUMAN BRANCHED-CHAIN ALPHA-KETOACID DEHYDROGENASE BY AN INTERNAL MOLECULAR SWITCH (E_value = );-42% similar to PDB:1A48 SAICAR SYNTHASE (E_value = );-42% similar to PDB:1OBD SAICAR-SYNTHASE COMPLEXED WITH ATP (E_value = );","","","No significant hits to the Pfam 11.0 database","Thu Apr 5 19:13:23 MDT 2001","34540855","","","","","","1","","","PG1125" "PG1007","1203026","1201842","1185","ATGGAAACAACCCAACTCTCTCCGCTCCGAAAAAGCATCGTAGGCGTACAGTTCCTCTTTGTTGCTTTCGGAGCTACTGTTTTAGTGCCCCTCCTTGTGGGTTTAGACCCTTCGACAGCCCTGTTTACGGCCGGCATCGGTACATTGATTTTTCATTTGGTGACGAAAGGAAAGGTGCCTATTTTTCTTGGTAGTAGTTTTGCCTTTATCGCTCCTATTATCAAGGCTACGGAGATGTATGGGCTGCCCGGTGCTCTTTCGGGTATGGTCGGTGTGGCATTGGTTTATTATCTGATGAGTGCTTTGGTCAAGTGGCAGGGAGTACGTGTGATCCAACGTTTGTTCCCGCCTGTAGTCATCGGCCCTGTCATTATCCTGATCGGACTTTCGCTTGCCGGAGCCGGAGTGGATATGGCACAATCCAACTGGATACTGGCTACTATATCGCTTGCTACCGCCGTGCTAGTAACTATGCTGGCCAAGGGGCTTTTCAAGCTGATTCCCATCTTCTGCGGTATAGTGGTAGGCTATGTGATAGCCGTTGTTTTCTATGAGGTCGATCTGAATCCTGTTCGTGAGGCTGCGTGGTTGAGCCTGCCTCAGTTTTCTTTCCCCAAGTTCTCTCTTCCTCCCATCCTCTTTATGTTGCCTGTGGCAATTGCTCCCGTGATAGAACATATCGGCGACGTCTATGTGGTAAATACGGTGACAGGAAAAGATTTTGTAAAAGATCCGGGGCTGCATCGTACCCTCTTGGGCGATGGTTTGGCCTGTATGGTAGCAGGTCTGCTGGGAGGACCTCCCGTGACTACTTATTCGGAAGTAACCGGAGCCATGGCCCTAACTCGTGTGACGGATCCGATGGTGATTCGTATAGCAGCCGTAACGGGAATTGTTTTCTCAGCTGTAGGTAAGGTCAGTGCCTTGCTCAAATCCATCCCTCCTGCCGTTCTCGGTGGTATCATGCTGCTCCTATTCGGTACGATAGCTTCGGCCGGCATTGCCAATCTGGTCAATCATAAAGTGGATATGAGTCGGACACGTAATATTATTATAGTGTCCATCACTCTTACGCTCGGTATCGGCGGAGCAGTCGTTTCGTTCGGTGGATTTACGATGGCCGGTATCGGTTTGGCTGCCATAGTAGGGGTAGTACTCAATCTGATCTTGCCCCAAGAGCAGGAG","9.90","5.86","41233","METTQLSPLRKSIVGVQFLFVAFGATVLVPLLVGLDPSTALFTAGIGTLIFHLVTKGKVPIFLGSSFAFIAPIIKATEMYGLPGALSGMVGVALVYYLMSALVKWQGVRVIQRLFPPVVIGPVIILIGLSLAGAGVDMAQSNWILATISLATAVLVTMLAKGLFKLIPIFCGIVVGYVIAVVFYEVDLNPVREAAWLSLPQFSFPKFSLPPILFMLPVAIAPVIEHIGDVYVVNTVTGKDFVKDPGLHRTLLGDGLACMVAGLLGGPPVTTYSEVTGAMALTRVTDPMVIRIAAVTGIVFSAVGKVSALLKSIPPAVLGGIMLLLFGTIASAGIANLVNHKVDMSRTRNIIIVSITLTLGIGGAVVSFGGFTMAGIGLAAIVGVVLNLILPQEQE","uracil permease","TIGR ID: PG1126","uracil permease","Inner membrane, Cytoplasm","Numerous significant hits in gapped BLAST to uracil permeases; e.g., residues 7-392 are 47% similar to a probable uracil permease (U32802) of Haemophilus influenzae, residues 4-391 are 47% similar to uracil permease (AE001749) of Thermotoga maritima, and residues 6-394 are 45% similar to an uracil permease (AE002060) of Deinococcus radiodurans.This sequence is similar to BT0686.","
InterPro
IPR006042
Family
Xanthine/uracil permease
TIGR00801\"[5-389]Tncs2
PS01116\"[313-333]TXANTH_URACIL_PERMASE
InterPro
IPR006043
Family
Xanthine/uracil/vitamin C permease
PTHR11119\"[5-395]TXant/urac/vitC
PF00860\"[9-369]TXan_ur_permease
noIPR
unintegrated
unintegrated
PTHR11119:SF3\"[5-395]TPTHR11119:SF3


","BeTs to 3 clades of COG2233COG name: Xanthine/uracil permeasesFunctional Class: FThe phylogenetic pattern of COG2233 is ------v-EB-h---------Number of proteins in this genome belonging to this COG is 2","***** IPB000444 (Xanthine/uracil permeases family) with a combined E-value of 1.3e-57. IPB000444A 114-131 IPB000444B 212-241 IPB000444C 249-299 IPB000444D 300-337 IPB000444A 119-136","Residues 14-392 are 47% similar to a (PERMEASE TRANSMEMBRANE TRANSPORT PROTEIN YOLK SAC) protein domain (PD002574) which is seen in URAA_HAEIN.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","Mon Jun 4 10:14:51 MDT 2001","","Mon Jun 4 10:14:51 MDT 2001","Wed Dec 3 08:42:34 2003","Fri Apr 20 13:31:53 MDT 2001","Fri Apr 20 13:31:53 MDT 2001","Fri Apr 20 13:31:53 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 17-390 are 27% similar to PG1879, a xanthine/uracil permease family protein.","Mon Jun 4 10:14:51 MDT 2001","Mon Mar 13 16:15:40 MST 2000","-40% similar to PDB:1G5G FRAGMENT OF FUSION PROTEIN FROM NEWCASTLE DISEASE VIRUS (E_value = );-42% similar to PDB:1XQE The mechanism of ammonia transport based on the crystal structure of AmtB of E. coli. (E_value = );-42% similar to PDB:1XQF The mechanism of ammonia transport based on the crystal structure of AmtB of E. coli. (E_value = );-42% similar to PDB:2NMR An unusual twin-His arrangement in the pore of ammonia channels is essential for substrate conductance (E_value = );-42% similar to PDB:2NOP An unusual twin-His arrangement in the pore of ammonia channels is essential for substrate conductance (E_value = );","","","Residues 9 to 369 (E-value = 3.1e-102) place PG1007 in the Xan_ur_permease family which is described as Permease family (PF00860)","Fri Apr 20 13:31:53 MDT 2001","34540856","","","Ghim,S.Y. and Neuhard,J. 1994. The pyrimidine biosynthesis operon of the thermophile Bacillus caldolyticus includes genes for uracil phosphoribosyltransferase and uracil permease. J. Bacteriol. 176(12):3698-3707. PubMed: 8206848","","Mon Mar 13 15:22:50 MST 2000","1","","","PG1126" "PG1008","1203366","1203830","465","ATGGAAAGGTTAGACAAACTCGACAGGCGAATCCTGAGCATTATCTCCAATAATGCCCGTATGCCGTTCAAAGATGTTGCAGAAGAATGCGGCGTATCGCGTGCTGCCGTTCACCAGCGCGTACAAAGAATGATCGAAATGGGAGTTATTACAGGTTCGGGCTATCGTATCAACCCGAAGTCTTTGGGTTTCAGAACATGTACTTACGTAGGCGTTCGTCTGGAGAAAGCCTCGATGTACAAGGATGTACTCCCCCATCTGTACAACATTCCCGAGATCGTGGAGTGTCACTATACGACAGGACCCTACTCTTTGCTGATCAAGCTCTTCGCCATCGACAATGACCACCTGATGGACATCTTGAATTCGACCATCCAAGAAATCCCCGGTATCGTCTCTACAGAAACGCTGATCTCTCTGGCCGAAGGATTCAATCGTGGCATCAAGATACCCGAAGGAGAGCAA","6.90","-0.18","17481","MERLDKLDRRILSIISNNARMPFKDVAEECGVSRAAVHQRVQRMIEMGVITGSGYRINPKSLGFRTCTYVGVRLEKASMYKDVLPHLYNIPEIVECHYTTGPYSLLIKLFAIDNDHLMDILNSTIQEIPGIVSTETLISLAEGFNRGIKIPEGEQ","1203366 1203830","TIGR ID: PG1127","transcriptional regulatory protein","Cytoplasm","Numerous significant hits to transcription regulator protein in gapped BLAST; e.g. residues 1-149 are 37% similar to gb|AAC22221.1| transcriptional regulatory protein (asnC) of Haemophilus influenzae Rd, residues 3-148 are 36% similar to gb|AAF93249.1| transcriptional regulator AsnC of Vibrio cholerae, residues 4-149 are 39% similar to gb|AAG58946.1|AE005606_2 regulator for asnA, asnC and gidA of Escherichia coli O157:H7.","
InterPro
IPR000485
Family
Bacterial regulatory proteins, AsnC/Lrp
PR00033\"[4-20]T\"[20-31]T\"[31-50]THTHASNC
PF01037\"[68-142]TAsnC_trans_reg
SM00344\"[4-111]THTH_ASNC
PS50956\"[4-65]THTH_ASNC_2
InterPro
IPR011008
Domain
Dimeric alpha-beta barrel
SSF54909\"[64-149]TDimer_A_B_barrel
InterPro
IPR011991
Domain
Winged helix repressor DNA-binding
G3DSA:1.10.10.10\"[4-55]TWing_hlx_DNA_bd
noIPR
unintegrated
unintegrated
G3DSA:3.30.70.920\"[56-142]TG3DSA:3.30.70.920
SSF46785\"[4-63]TSSF46785


","BeTs to 7 clades of COG1522COG name: Transcriptional regulators, Lrp familyFunctional Class: KThe phylogenetic pattern of COG1522 is AMtK----EBRH---P-----Number of proteins in this genome belonging to this COG is 1","***** IPB000485 (Bacterial regulatory proteins, asnC family) with a combined E-value of 3.8e-19. IPB000485A 4-30 IPB000485B 33-63","Residues 4-64 are 47% similar to a (PROTEIN TRANSCRIPTIONAL REGULATORY TRANSCRIPTION) protein domain (PD000857) which is seen in Y151_METJA.Residues 69-138 are 41% similar to a (PROTEIN TRANSCRIPTIONAL REGULATORY) protein domain (PD001621) which is seen in ASNC_ECOLI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Feb 7 16:47:44 MST 2001","Wed Feb 7 16:47:44 MST 2001","Wed Feb 7 16:47:44 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","-59% similar to PDB:2CG4 STRUCTURE OF E.COLI ASNC (E_value = 6.1E_25);-64% similar to PDB:1RI7 crystal structure of a protein in the LRP/ASNC family from the hyperthermophilic archaeon Pyrococcus sp. OT3 (E_value = 1.7E_19);-64% similar to PDB:2CYY Crystal structure of PH1519 from Pyrococcus horikosii OT3 (E_value = 1.7E_19);-59% similar to PDB:1I1G CRYSTAL STRUCTURE OF THE LRP-LIKE TRANSCRIPTIONAL REGULATOR FROM THE ARCHAEON PYROCOCCUS FURIOSUS (E_value = 6.8E_16);-49% similar to PDB:2GQQ Crystal Structure of E. coli Leucine-responsive regulatory protein (Lrp) (E_value = 2.3E_11);","","","Residues 28 to 129 (E-value = 1.7e-16) place PG1008 in the AsnC_trans_reg family which is described as AsnC family (PF01037)","","34540857","","","Kolling,R. and Lother,H. 1985. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli. J. Bacteriol. 164 (1): 310-315. PubMed: 2864330. ","","Wed Feb 7 16:47:44 MST 2001","1","","","PG1127" "PG1009","1203880","1205259","1380","ATGCCGTCCTATACGCTTACCCAATTAGCCTCTGCTGTCCGGAATTGTCTCGAAAGCGGATTCCCCGGACGCTATTGGGTCAGTGCAGAGACCAGTGGTGTCCGCGTAGGCATATCGGGACATTGCTACCTGGAGTTGCTGGACAAGGATACATCCGGCTCTCAAGTAACAGCCCGTATGAAAGCCATGATATGGGCTTCGGACTATGCCACATTATCAGGACGCTTTCAGAGAGAAACGGGCGAAACATTCGATTCCGGTCTCCACGTTCTGGTACTGGTAAGTGTATCCTACCATGAGCAATATGGACTAAGCCTTCGCATTCTGGACATAGACCCCTCCTACACAATGGGGGCTATGGCTCGCAAACGCAAAGAGATCATCGAAGAACTGCGCCGGCAAGGTCTATACGACCTCAATCGCAGCCTGTCCCTACCCCGCCCCACCCAACGCATTGCCATAGTCTCATCCGGTGCAGCTGCCGGCTTCGAAGATTTCATCGCACACCTTAGCCATTCGGCCGAGCATTTCTGTTTCTATCCCGTCCTCTTCCAAGCCGTGATGCAAGGAGCACAAACCGAAGCATCGGTGTTGGGAGCTTTGGAGCGCATCGCATATCACCGGGATTCTTTCGATGTAGTGGTCATCATTCGCGGAGGAGGAGCAGTGAGCGAACTGGCAGCTTTCGACTCGCTTGCCATCGGACAAGCATGTGCACGCTTCCCTCTCCCTATCCTTACCGGCATCGGACACGACAGGGACGAGACGGTGGTGGATCTGGTAGCTTATCGTTCGCTCAAGACACCTACGGCTGTGGCCGATTTTCTTGTAAACTGCCAGCGCGAAGAGTGGAAATTGATCGACGACCTTCGCTCCCGTGCTGCCGAAGGACTTCGAATGATGATGATGTACTGCCACGAACGGCTGATTCAGCTATCGCTCCGCACACCGGCCATACTGAAATCATCTGTTCGTGAAGAACACCATCGGATAAAGTCCGTAGAAGATCGCATCCGATTAGCCGCTAAACAGCGGATCGCCTTCGGACTTCAGCAACTCCAAATAGCAAGCCGCAGCCTGCCGGCCTTGATGAAGAGCGAACTGAAACAAAATACGGGTCAATTGGATCAGGTAGCAGCCCGACTGCCTTTATTGGTGACAGCCAATCTGAAGAACTACAATCGACGCCTCGAAACCAACGAACAGGCCATCCGCCTGTTGCACCCCAATGCTACCCTACGCCGGGGCTTCGCCATCGTTCTGAAAGACGACAAAGCCATTCGCTCCCACTCGGAGCTACACAAGGGCGATCACCTCGTCGCACAATTTGCAGACGGATCTGTATCAGCCGTTGTAGACCAACCTCAAAAGGGGAAACAC","9.00","9.59","51213","MPSYTLTQLASAVRNCLESGFPGRYWVSAETSGVRVGISGHCYLELLDKDTSGSQVTARMKAMIWASDYATLSGRFQRETGETFDSGLHVLVLVSVSYHEQYGLSLRILDIDPSYTMGAMARKRKEIIEELRRQGLYDLNRSLSLPRPTQRIAIVSSGAAAGFEDFIAHLSHSAEHFCFYPVLFQAVMQGAQTEASVLGALERIAYHRDSFDVVVIIRGGGAVSELAAFDSLAIGQACARFPLPILTGIGHDRDETVVDLVAYRSLKTPTAVADFLVNCQREEWKLIDDLRSRAAEGLRMMMMYCHERLIQLSLRTPAILKSSVREEHHRIKSVEDRIRLAAKQRIAFGLQQLQIASRSLPALMKSELKQNTGQLDQVAARLPLLVTANLKNYNRRLETNEQAIRLLHPNATLRRGFAIVLKDDKAIRSHSELHKGDHLVAQFADGSVSAVVDQPQKGKH","1203880 1205259","The probable small subunit is PG1256TIGR ID: PG1128","exodeoxyribonuclease VII large subunit","Cytoplasm, Inner membrane","This sequence is similar to CT329.Numerous significant hits to exodeoxyribonuclease VII large subunit protein in gapped BLAST; e.g. residues 6-298 are 32% similar to gbAAF09773.1AE001881_2 exodeoxyribonuclease VII large subunit, putative of Deinococcus radiodurans, residues 5-453 are 27% similar to gbAAG07164.1AE004796_9 exodeoxyribonuclease VII large subunit of Pseudomonas aeruginosa, residues 4-452 are 25% similar to gbAAC22056.1 exodeoxyribonuclease VII, large subunit of Haemophilus influenzae Rd.","
InterPro
IPR003753
Family
Exonuclease VII, large subunit
PF02601\"[211-415]TExonuc_VII_L
TIGR00237\"[5-452]TxseA


","BeTs to 7 clades of COG1570COG name: Exonuclease VII, large subunitFunctional Class: LThe phylogenetic pattern of COG1570 is ------v-ebrhUj----inxNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 4-237 are 23% similar to a (LARGE SUBUNIT EXONUCLEASE VII) protein domain (PD013688) which is seen in EX7L_HAEIN.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Wed Mar 27 11:34:35 2002","Wed Mar 22 15:51:57 MST 2000","Fri Jul 25 12:57:02 2008","Wed Mar 27 11:34:35 2002","","Wed Mar 27 11:34:35 2002","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Jul 25 12:57:02 2008","No significant hits to the PDB database (E-value < E-10).","","","Residues 211 to 415 (E-value = 6.4e-07) place PG1009 in the Exonuc_VII_L family which is described as Exonuclease VII, large subunit (PF02601)","Wed Mar 27 11:34:35 2002","34540858","","","","","","1","","","PG1128" "PG1010","1205541","1208090","2550","ATGTCACGCAAAACGTACACATTCGACGAGGCATACAAAGCCTCGCTTGCCTATTTTGATGGCGATGAGCTTGCCGCCAAAGTATGGGTAATGAAGTATGCGCTGAAAGATGCCCAAGGGAATATCTACGAAAAAAGCCCTATGGACATGCACAAGCGTATAGCCTCCGAAATAGCTCGCATCGAGAAAAAGTATCCCAATCCTCTTTCCGAAAAAGAGCTGTTCGATCTCTTCGATCACTTCCGCTACATCGTGCCTCAGGGAAGTCCGATGACCGGTATCGGCAACGACTTTCAGATAGCCTCCCTCTCCAACTGTTTCGTTGTCGGTTTGGATGGTGATGCCGATTCATATGGAGCTATCATTCGCATCGATGAAGAGCAGGTACAGCTGATGAAACGCCGCGGAGGCGTAGGGCACGACCTCTCCCACATTCGCCCGAAAGGTTCGCCCGTGAAGAACTCCGCCCTCACATCCACCGGTCTGGTTCCTTTCATGGAACGCTACTCCAACAGTACGCGCGAAGTAGCTCAAGACGGCCGTCGCGGTGCACTTATGCTGTCCGTATCCATCAAGCATCCCGATTCCGAATCCTTCATCGATGCCAAAATGACCGAAGGCAAGGTGACGGGAGCCAACGTATCGGTGAAGATCGACGATGAATTCATGCGTGCCGTTGTCGAAGGCAAACCCTATAAACAACAGTACCCCATCGATGCCAAAGAACCGAAGTGGGAGAAAGAGATCGATGCGCGTACCCTCTGGGGCAAAATCATCCACAACGCTTGGAAGTCGGCCGAACCCGGTGTACTCTTCTGGGATACGATCATCCGCGAATCGGTACCCGATTGCTATGCCGATCTGGGCTTCCGTACAGTCTCCACCAACCCCTGTGGTGAGATCCCTCTCTGCCCCTACGATAGCTGCCGACTGCTCGCTATCAACCTCTATTCCTACGTAAAGAACCCATTCACGAGCGAAGCCTCCTTCGACTTCGAGCTTTTCCGTAACCACGTCGTTTTGGCACAGCGCATCATGGACGACATCATCGACCTCGAAGCCGAAAAGATCGAACAGATCCTAAGCAAGATAGCCAGCGATCCCGAAAGCGAAGAAGTCAAGACCTCGGAGCGTAACCTCTGGCACAAGATCCGTCGCAAGACCCTTGCCGGTCGTCGTACAGGCGTAGGTATCACCGCCGAAGGCGATATGCTTGCAGCGATGGGATTCCGCTACGGTTCGGACGAAGCTACCCAATTCGCCGAAGAGGTACAGAAGACCCTCGCACTCTGCGCCTATAGCAGCTCTGTGACCATGGCCAAGGAGCGCGGCGCCTTCGAACTGTTCGATGCCAAACGCGAAGAGAACAATCCCTTTATAGCCCGTATACGCGAAGCCGACCCATGGCTGTACGAAGAGATGAAGCAGTACGGACGACGCAATATCGCCTGCCTTACCATAGCTCCTACCGGTTCCACCAGTCTGATGACGCAGACTTCCTCCGGTATCGAGCCGGTATTCATGCCGGTCTACAAGCGTCGCAGAAAGGTGAATCCGAGCGACAAGAACGTACAGATCGACTATGTGGACGAAGTGGGCGACAGCTTCGAAGAGTTCGTTGTCTACCACCACAACTTCGTCACTTGGATGCGCACCAACGGTTACGACCCCGACCGCAAATACACGAACGAAGAGATCGACGACCTCGTGGCCCGTTCGCCCTACTACAAGGCCACGGCCAACGATGTGGACTGGGTAGCCAAAGTGAAGATGCAGGGACGCATCCAGCAGTGGGTAGACCACTCCATCAGCGTAACCATCAACCTCCCCTCCGATGTCACCGAAGAGCTGGTCAATACCCTGTATGTGGAAGCATGGAAGAGCGGCTGCAAAGGCTGTACTGTCTATCGCGACGGTTCGCGCAGTGGCGTCCTTATCACTGACAAGCCGAAGAAGAAAGACAAGAAAGAGGAGCCGGCAGCTCTCCAAACCACAGTACAGAGCATGCTTATCTCCCGTCCGCGCGAGCTGGAGGCAGAGGTCGTTCGCTTCCAAAACAATCGTGAAAAGTGGATCGCTTTCGTAGGCCTCAAGGATGGACGTCCTTACGAAATCTTCACCGGTATAGCCGATGACGACGAAGGTATCATGGTACCGAAGAGCGTTACCCACGGCAAGATAATCAAGAACAGGGACGAAAACGGCGAACGACACTACGACTTCCAGTTCTGCAACAAGAAAGGTTTCAAGGTAACCATCGAAGGCTTGGATAGCAAGTTCAATCCCGAATACTGGAACTATGCCAAGCTCATCTCGGGCGTCTTGCGCTACGGTATGCCTATCGAGCAGGTGGTACATCTCGTACAGGGCATGTCGCTGAACGATGAATCCATCAATACATGGAAGAACGGCGTGGAGCGCGCCCTGAAACGTTACCTCCCCAATGGCACCACCCTGTCGGGACAGGTATGTCCGAGTTGCGGTCAGGAGACATTGGTTTATCAGGAAGGCTGCCTGCTATGCACCAGTTGCGGAGCTTCCAAATGCGGA","6.10","-8.28","96289","MSRKTYTFDEAYKASLAYFDGDELAAKVWVMKYALKDAQGNIYEKSPMDMHKRIASEIARIEKKYPNPLSEKELFDLFDHFRYIVPQGSPMTGIGNDFQIASLSNCFVVGLDGDADSYGAIIRIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDGRRGALMLSVSIKHPDSESFIDAKMTEGKVTGANVSVKIDDEFMRAVVEGKPYKQQYPIDAKEPKWEKEIDARTLWGKIIHNAWKSAEPGVLFWDTIIRESVPDCYADLGFRTVSTNPCGEIPLCPYDSCRLLAINLYSYVKNPFTSEASFDFELFRNHVVLAQRIMDDIIDLEAEKIEQILSKIASDPESEEVKTSERNLWHKIRRKTLAGRRTGVGITAEGDMLAAMGFRYGSDEATQFAEEVQKTLALCAYSSSVTMAKERGAFELFDAKREENNPFIARIREADPWLYEEMKQYGRRNIACLTIAPTGSTSLMTQTSSGIEPVFMPVYKRRRKVNPSDKNVQIDYVDEVGDSFEEFVVYHHNFVTWMRTNGYDPDRKYTNEEIDDLVARSPYYKATANDVDWVAKVKMQGRIQQWVDHSISVTINLPSDVTEELVNTLYVEAWKSGCKGCTVYRDGSRSGVLITDKPKKKDKKEEPAALQTTVQSMLISRPRELEAEVVRFQNNREKWIAFVGLKDGRPYEIFTGIADDDEGIMVPKSVTHGKIIKNRDENGERHYDFQFCNKKGFKVTIEGLDSKFNPEYWNYAKLISGVLRYGMPIEQVVHLVQGMSLNDESINTWKNGVERALKRYLPNGTTLSGQVCPSCGQETLVYQEGCLLCTSCGASKCG","1205541 1208090","In H. pylori, this enzyme catalyzes the conversion of ribonucleotides to deoxyribonucleotides. It is a tetramer composed of two alpha and two beta subunits. Many of the BLAST similarities are to ribonucleotide reductases from archaebacteria. For a review, see PubMed: 9012808.TIGR ID: PG1129","ribonucleotide reductase alpha subunit","Cytoplasm","Numerous significant hits to ribonucleotide reductases from, i.e., Archaeoglobus fulgidus (gi: 2648891), Thermotoga maritima (gi: 2440216), Mycobacterium tuberculosis (gi: 2909629), among others.This protein is also similar to CT827, a predicted ribonucleotide reductase, and to BT2145. Other subunits were not located.","
InterPro
IPR000788
Domain
Ribonucleotide reductase large subunit, C-terminal
PR01183\"[181-200]T\"[392-414]T\"[420-443]T\"[478-505]TRIBORDTASEM1
PTHR11573\"[85-371]T\"[397-850]TRibncl_red_lg_C
PF02867\"[103-637]TRibonuc_red_lgC
InterPro
IPR001130
Family
TatD-related deoxyribonuclease
PS01090\"[47-57]?TATD_2
InterPro
IPR013344
Domain
Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
TIGR02504\"[25-646]TNrdJ_Z
noIPR
unintegrated
unintegrated
G3DSA:3.20.70.20\"[22-641]TG3DSA:3.20.70.20
PTHR11573:SF3\"[85-371]T\"[397-850]TPTHR11573:SF3
SSF51998\"[19-717]TSSF51998


","BeTs to 15 clades of COG0209COG name: Ribonucleotide reductase alpha subunitFunctional Class: FThe phylogenetic pattern of COG0209 is a-tKYqvcEBRhujgp-linxNumber of proteins in this genome belonging to this COG is 1","***** IPB000788 (Ribonucleotide reductase large subunit) with a combined E-value of 7.7e-24. IPB000788A 131-167 IPB000788B 181-203 IPB000788E 249-278 IPB000788G 307-316 IPB000788H 467-505 IPB000788I 624-642","Residues 383-642 are 36% similar to a (REDUCTASE RIBONUCLEOTIDE OXIDOREDUCTASE DNA REPLICATION) protein domain (PD000706) which is seen in P95484_PYRFU.Residues 140-640 are 24% similar to a (REDUCTASE OXIDOREDUCTASE PUTATIVE) protein domain (PD025570) which is seen in VG50_BPML5.Residues 181-322 are 38% similar to a (REDUCTASE RIBONUCLEOTIDE PROTEIN LARGE) protein domain (PD008445) which is seen in O28609_ARCFU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Wed Mar 27 17:49:34 2002","Wed Apr 18 15:29:56 MDT 2001","Wed Dec 10 16:44:39 2003","Wed Mar 27 17:49:34 2002","Thu Feb 22 19:09:24 MST 2001","Thu Feb 22 19:09:24 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Fri Apr 7 13:21:16 MDT 2000","Tue Jul 17 15:05:03 2007","-46% similar to PDB:1XJE Structural mechanism of allosteric substrate specificity in a ribonucleotide reductase: dTTP-GDP complex (E_value = 4.5E_59);-46% similar to PDB:1XJF Structural mechanism of allosteric substrate specificity in a ribonucleotide reductase: dATP complex (E_value = 4.5E_59);-46% similar to PDB:1XJG Structural mechanism of allosteric substrate specificity in a ribonucleotide reductase: dATP-UDP complex (E_value = 4.5E_59);-46% similar to PDB:1XJJ Structural mechanism of allosteric substrate specificity in a ribonucleotide reductase: dGTP complex (E_value = 4.5E_59);-46% similar to PDB:1XJK Structural mechanism of allosteric substrate specificity in a ribonucleotide reductase: dGTP-ADP complex (E_value = 4.5E_59);","","","Residues 103 to 637 (E-value = 1.5e-12) place PG1010 in the Ribonuc_red_lgC family which is described as Ribonucleotide reductase, barrel domain (PF02867)","Wed Apr 18 15:29:56 MDT 2001","34540859","","","Jordan A, Torrents E, Jeanthon C, Eliasson R, Hellman U, Wernstedt C, Barbe J, Gibert I, Reichard P . 1997. B12-dependent ribonucleotide reductases from deeply rooted eubacteria are structurally related to the aerobic enzyme from Escherichia coli. Proc Natl Acad Sci U S A 94(25):13487-92. PubMed: 9391052. ","","Tue Jul 17 15:05:03 2007","1","","","PG1129" "PG1011","1208196","1210190","1995","ATGCCCTCTTCTTTGTACCCTTTTTTCCATATTATTTTGCATGCCACACACTTAATTTTCTATAGATTTGCAACTAATCCACAAACATTAACAAGTATGATTACAACATTAGGCGAGTATGCATTAAAAGCAGCTATTAAAATCGGCTTGAATATCCACAGTTTTCATCGTTCTGAAGTCGATGAGCAGATCCGATCCGCTTTCGAATATGCCGTAAATGATTGGTCGAAACACGATGTGGGAATAACCACACGAATCAACCTAAAACAAGCATTAGAGGCCTATGCCCAAAATCCGACTTCATTCAAGCCGGAGGATCAAGAAATACGAGATTTTATTGCCTGTTTTGAGAAACGACTTGCTGAATCCAAACACCAAGCAGCCTACAACTACTTGACCCAATTGGAGAATAGAGAGGAACATACCCAAATCATGGCAACCATCAAAGAAAAAGGCCTTGATCCACGGGATATTGAACGATACTTGAAACAACTGCCAATCAAAGAAGGTCAAGCAAAAGCGGAACAGGCCATCGAAGATTTATACCAAAGTCGTGAAATAGAACTCCCTTTGCGCGAGATATTGCAAATCATAGTCCGAAATCTGTTCGAACACTCGGCCGAGTTATTACATGAAATAGAGAAGCTGAAGAAGAGTGGAAATACTCTATTAGCCGATACTTTAGAATCCATCCGGCAAGTAGTGATCGGCAAAAGCGACAACAGCCTCACTCGGATTTACGAAGAGTATGAAGAAAAAAGGAATGAAGAGTTTATTAAGGTTTTAAGGGAGCTAATCGAAGCAGCCAAGACCAAGTTTTCATTTGACGAGGCTTGCAATTTCTATGAGAAGCTGATCGCGATTGAACGATCTCTCAAAAACCTCTTCGGCTATGCTGACCTGCTATATTCTCTTAATGACTTCACCAAAGCCAAACAATATTATGAAGAAATCTTAGTTATCTATAGAGCACTCGCAAAGAAAAATCCTCAGGCCTATAATCCCTACTTGGCCTTAACATTGAACAATCTAGGTCTATTATACAGCAATAACAATGAGCTAAAGCAAGCGAAAGACTGCCATCAAGAGGCCTTGGTGATAAGAAGAGAACTCGTAAAAAAAAGTCCTCAGGCCTACAATCAAGACTTGGCTATGACATTGAACAATTTAGGCCTTTTACTCGGCAAAAACAATGAATTAAAGCAAGCGAAAGATTGCTATCAAGAGGCTTTGGTGAAATACAGAGAGCTTGCAAAGAAAAATCCTCAAGTCTATAACCCGGAGTTAGCCTCAGTATTGAACAATCTGGGTGTCTTACTCAACGATAACAAAGAGCCCAAGCAAGCAAAAGAATATCATCAAGAAGCCTTGGAGATACGCAGAGAACTTGTGAGAAAAAAACCTCAGGTCTATAATTCGTACTTGGCTATGACATTGAGCAATCTGGCTGTCTTACTCGCCAATAACAATGAACTAGAGCAAGCGAAAGACTACTACCAAGAGGCTTTGGTGATAAGAAGAGAACTGGCAGTCAAAAATCCAGAAGCCTATAATCCAGACTTGGCTACGACTTTGAATAATCTAGGTGCTGCTTTACTCAGCAACAACAATGAAACAAAGCAAGCGAAGGACTACTTTCAAGAAGCTTTGAAGATAAGAAGAGAACTCGCAAAGAAAAATCCAAAGGCCTATAATCCATACCTAGTCTCAACATTGAACAATCTGGCTGTTTTATACTACCGAATCAATAATCAAGAAGACGCAGAAAAAGCATATAAAGAAGCCCTTTCGATAATAGAAATTTTGGCGAAAAACAATCCATCAGCCTATGAGATAGTCTATGCACAGACGATGACCTTTGGAATACTTTGCTTAGGAAAAGATCCAAAGGACATACAACAAATAAAGGCAACACTACAGAAATACCCTGACAACAACCAAGCAATAGCCTTACTTGAAAGAATAAAAAGCCGGGAAGAAGAGAATCCAAAAGCG","7.10","0.74","76843","MPSSLYPFFHIILHATHLIFYRFATNPQTLTSMITTLGEYALKAAIKIGLNIHSFHRSEVDEQIRSAFEYAVNDWSKHDVGITTRINLKQALEAYAQNPTSFKPEDQEIRDFIACFEKRLAESKHQAAYNYLTQLENREEHTQIMATIKEKGLDPRDIERYLKQLPIKEGQAKAEQAIEDLYQSREIELPLREILQIIVRNLFEHSAELLHEIEKLKKSGNTLLADTLESIRQVVIGKSDNSLTRIYEEYEEKRNEEFIKVLRELIEAAKTKFSFDEACNFYEKLIAIERSLKNLFGYADLLYSLNDFTKAKQYYEEILVIYRALAKKNPQAYNPYLALTLNNLGLLYSNNNELKQAKDCHQEALVIRRELVKKSPQAYNQDLAMTLNNLGLLLGKNNELKQAKDCYQEALVKYRELAKKNPQVYNPELASVLNNLGVLLNDNKEPKQAKEYHQEALEIRRELVRKKPQVYNSYLAMTLSNLAVLLANNNELEQAKDYYQEALVIRRELAVKNPEAYNPDLATTLNNLGAALLSNNNETKQAKDYFQEALKIRRELAKKNPKAYNPYLVSTLNNLAVLYYRINNQEDAEKAYKEALSIIEILAKNNPSAYEIVYAQTMTFGILCLGKDPKDIQQIKATLQKYPDNNQAIALLERIKSREEENPKA","1208196 1210190","Gapped BLAST hits tend to correspond to residues 50-250 and residues 425-650. This may be an incorrectly predicted orf.TIGR ID: PG1130","hypothetical protein","Cytoplasm","One weak hit in gapped BLAST; e.g. residues 275-598 are 20% similar to pir||S75991 hypothetical protein of Synechocystis sp. (strain PCC 6803).","
InterPro
IPR001440
Repeat
Tetratricopeptide TPR_1
PF00515\"[338-371]T\"[384-417]T\"[430-463]T\"[476-509]T\"[522-556]T\"[569-602]TTPR_1
InterPro
IPR011990
Domain
Tetratricopeptide-like helical
G3DSA:1.25.40.10\"[291-598]TTPR-like_helical
InterPro
IPR013026
Domain
Tetratricopeptide region
SM00028\"[338-371]T\"[384-417]T\"[430-463]T\"[476-509]T\"[522-556]T\"[569-602]TTPR
PS50293\"[338-602]TTPR_REGION
noIPR
unintegrated
unintegrated
PTHR19959\"[298-600]TPTHR19959
SSF48452\"[120-598]TSSF48452


","BeTs to 5 clades of COG0457COG name: TPR-repeat-containing proteinsFunctional Class: RThe phylogenetic pattern of COG0457 is AMTKYQVCEB-HUJ--OLINXNumber of proteins in this genome belonging to this COG is 21","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Wed Feb 7 16:57:39 MST 2001","Wed Feb 7 16:57:39 MST 2001","Wed Feb 7 16:57:39 MST 2001","Wed Feb 7 16:57:39 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","-51% similar to PDB:1A37 14-3-3 PROTEIN ZETA BOUND TO PS-RAF259 PEPTIDE (E_value = );-51% similar to PDB:1A38 14-3-3 PROTEIN ZETA BOUND TO R18 PEPTIDE (E_value = );-51% similar to PDB:1A4O 14-3-3 PROTEIN ZETA ISOFORM (E_value = );-51% similar to PDB:1IB1 CRYSTAL STRUCTURE OF THE 14-3-3 ZETA:SEROTONIN N-ACETYLTRANSFERASE COMPLEX (E_value = );-51% similar to PDB:1QJA 14-3-3 ZETA/PHOSPHOPEPTIDE COMPLEX (MODE 2) (E_value = );","","","Residues 338 to 371 (E-value = 4.8e-05) place PG1011 in the TPR family which is described as TPR Domain (PF00515)Residues 430 to 463 (E-value = 1.6e-05) place PG1011 in the TPR family which is described as TPR Domain (PF00515)Residues 476 to 509 (E-value = 6.6e-05) place PG1011 in the TPR family which is described as TPR Domain (PF00515)","","34540860","","","","","","1","","","PG1130" "PG1012","1211030","1210737","294","ATGTTTTTGCTTCTCCTGTGCACGATCCGGTCATCGGCCGCGTCTGCACGAGAACATTATCGCGCAAAAGTAATAAATAATGAAGCACGATTCCCTTTTTCGGCTGCTGCCGGCATCAAGAGCGGAGCCGCACTCATACTATCGATAAGTAGCTACAGCGGTATTTTTGGGGGTAGGATAGGGGGAGGAAGACAATCAATCGTGGGAGGCCTTTTTCTCTGCTCTCCGGAGCTTATGGCAAACACTGAAAAATACGCACCAAAAAAGTTTTCAACAACGAAGATGAGTTTTGAA","10.70","7.13","10453","MFLLLLCTIRSSAASAREHYRAKVINNEARFPFSAAAGIKSGAALILSISSYSGIFGGRIGGGRQSIVGGLFLCSPELMANTEKYAPKKFSTTKMSFE","1211030 1210737 [Delay by 1338 1302 1314 0]","NO TIGR ID corresponds to this gene.","hypothetical protein","Periplasm, Cytoplasm","No hits in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-16]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Feb 7 17:08:18 MST 2001","Wed Feb 7 17:08:18 MST 2001","Wed Feb 7 17:08:18 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG1013","1211055","1213682","2628","ATGGAAATAGCGAGCAAGTACAACCCCGAAGAGGTAGAATCGAAATGGTATAACTACTGGATGGAATATGGCTGTTTCATCTCCGTTCCCGATGGACGAAAGCCATATACCGTGGTGATCCCCCCACCCAACGTGACGGGAGTACTCCACATGGGGCATATGCTCAACAATACGATTCAGGACATCCTCGTACGCCGTGCCCGTATGAAAGGGTACAACGCCTGCTGGGTGCCGGGTACAGACCATGCCTCCATAGCCACTGAAGCGAAGGTGGTAGGCCGATTGGCTGCTCAGGGTATCAGCAAGCAGGATCTCGGCCGAGAGGAGTTTCTCCGTCATGCATGGGACTGGACCCACGAGCACGGAGGCATCATCCTCGAACAGCTCAAGCGTCTGGGAGCGTCCTGCGACTGGACACGGACGGCCTTCACGATGGACGAATCTCGCTCCGAGAGCGTGATCAAGGTGTTCGTGGATCTCTACAACAAAGGACTGATCTACCGCGGCATACGGGTAGTAAACTGGGATCCGAAAGCACTGACTGCCCTCTCGGACGAAGAGGTGATCTACAAAGAAACAAACGGCAAGCTCTACTATCTGCGCTATTTCGTAGAGAACGAACCGGACAAATATATAATAGTAGCGACGACTCGCCCCGAAACCATCATGGGAGATACGGCCGTCTGCGTGAATCCGAACGACGAACGCTACCGCTGGCTTCGAGGCAAACGGGTGATAGTGCCCACCGTAGGGCGTGCAGTACCCATCATCGAAGACGAATATGTGGATATGGAGTTCGGTACGGGATGTCTGAAAGTAACACCCGCACACGATGTCAATGACTATATGCTCGGGCAGAAACACCGGCTCGAAAGCATAGACATATTCCACGACAACGGCATTCTCAACGAACATGGCGGCCCGTACGCCGGTATGGACCGATTCGATGTGCGTAAGAAGATCGAACAGGATCTGATCGATGCCGGTCTGATGGAGCGAGTGGAGAACTACGTAAACAAGGTAGGCTACTCCGAGCGTACCGATGTACCCATCGAACCGAAGCTCTCGATGCAGTGGTTCCTGCAGATGGAAAGTCTGGCCAAACCGGCTCTCGATGCCGTAATGAACGACGAGATCAAACTGCATCCGGCCAAATTCAAGAACACCTACCGCCACTGGATGGAGAACGTGAAGGACTGGTGCATCAGCCGACAACTCTGGTGGGGGCATCGTATCCCTGCCTACTACCTGCCGGACGGAAGTATCGTAGTGGCGGAGACGGCCGAAAAAGCCGTGGAACTGGCACGTAAGCAAACGGGATCGGACTCGCTCACAGTAGAGGATCTGCGACAGGACAGCGACTCGCTGGATACGTGGTTCTCCTCATGGCTATGGCCGATAAGCGTATTCGGCGATGTGATGGATCCGGAGAACGAAGAGCTGGACTACTACTATCCCACGAGCGACCTCGTAACGGCTCCGGACATTCTCTTCTTCTGGGTAGCCCGTATGATCATGGCAGGCTATGAATACCGTGGCAAGAAACCCTTCGACAACGTATATCTGACCGGTATCGTGCGCGATGGTCAGGGTAGAAAGATGTCCAAGAGCCTCGGCAACTCACCGGATCCGATCATGCTGATGGAGAAATACGGTGCCGACGGAGTACGCATGGGACTGATGATGGCCGCTCCGGCCGGCAACGATGTGCTCTTCGACGAATCGCTCTCGGAGCAGGGACGTAACTTCTGCAATAAGATATGGAATGCCTTCCGCCTCGTAAAAGGATGGCAGCAGGCAGAAACGTCCACGCAGCCCGAAGCCTCGGCTCTGGCCGTGAAATGGTTCGGGTATCGTCTCGATGAGGTGAAGACGGAGTTGGACGATCTCTTCTCCAAGTACCGTCTGAGCGAGGCACTGACACTGGTTTACAAGCTGTTCTGGGACGACTTCTCCTCCTGGTATCTGGAGATGGTGAAGCCGGCATACGGTCAGCCGATGGATGCGAAGACCTACGGCAGTACGATCGGATTCTTCGATCAGCTGCTGCGTTTGCTCCATCCCTTCATGCCTTTTATCACAGAAGAGCTATGGCATGCACTCGAACCGCGTCACGATGGCGAGACCATCATGCTCTGCCTCCTGCCCGATGCGCATGAGACGGACAGGGACTTCCTGCAAGCCTTCGACCGTACACGGGAGATCATAGCCGCCATTCGCAATATCCGCACCGGCAAGAACATTCCTTTCAAGGAAAAGCTGACGCTCGAAGCAGGAAACGAACACGATGCCTCTTTCGATGCCGTCATCATCAAAATGGGCAACCTTGAAGCCATCAACCGAGTGGAAGAAAAGACAAGCGGCTCTACCTCTTTCCTGATCGGTACACTGGAATACGCCATCCCGATGGGCGCATTGATCGACGTGGGAGAGGAGATCAAGAAGTTGTCCGACGAACTGGCCTATCAGGAGAAATTCCTCGCTTCGGTCATGAAGAAGCTCGGCAACGAAAGCTTTGTGGCCAAGGCTCCGCAAGCTGTCATAGAACTGGAGCAAAAGAAGAAAAGCGATGCCGAAGCGCGAATCGCCACACTTCGAGACAGTCTGAATCAGTTGCAATCGACCAAA","5.10","-24.92","100319","MEIASKYNPEEVESKWYNYWMEYGCFISVPDGRKPYTVVIPPPNVTGVLHMGHMLNNTIQDILVRRARMKGYNACWVPGTDHASIATEAKVVGRLAAQGISKQDLGREEFLRHAWDWTHEHGGIILEQLKRLGASCDWTRTAFTMDESRSESVIKVFVDLYNKGLIYRGIRVVNWDPKALTALSDEEVIYKETNGKLYYLRYFVENEPDKYIIVATTRPETIMGDTAVCVNPNDERYRWLRGKRVIVPTVGRAVPIIEDEYVDMEFGTGCLKVTPAHDVNDYMLGQKHRLESIDIFHDNGILNEHGGPYAGMDRFDVRKKIEQDLIDAGLMERVENYVNKVGYSERTDVPIEPKLSMQWFLQMESLAKPALDAVMNDEIKLHPAKFKNTYRHWMENVKDWCISRQLWWGHRIPAYYLPDGSIVVAETAEKAVELARKQTGSDSLTVEDLRQDSDSLDTWFSSWLWPISVFGDVMDPENEELDYYYPTSDLVTAPDILFFWVARMIMAGYEYRGKKPFDNVYLTGIVRDGQGRKMSKSLGNSPDPIMLMEKYGADGVRMGLMMAAPAGNDVLFDESLSEQGRNFCNKIWNAFRLVKGWQQAETSTQPEASALAVKWFGYRLDEVKTELDDLFSKYRLSEALTLVYKLFWDDFSSWYLEMVKPAYGQPMDAKTYGSTIGFFDQLLRLLHPFMPFITEELWHALEPRHDGETIMLCLLPDAHETDRDFLQAFDRTREIIAAIRNIRTGKNIPFKEKLTLEAGNEHDASFDAVIIKMGNLEAINRVEEKTSGSTSFLIGTLEYAIPMGALIDVGEEIKKLSDELAYQEKFLASVMKKLGNESFVAKAPQAVIELEQKKKSDAEARIATLRDSLNQLQSTK","1211055 1213682","TIGR ID: PG1132","valyl-tRNA synthetase (valine--tRNA ligase)","Cytoplasm","This sequence is similar to CT302 and BT4353.Numerous significant hits to valyl-tRNA synthetase (valine--tRNA ligase) in gapped BLAST; e.g. residues 2-873 are 44% similar to gb|AAD36880.1|AE001819_3 valyl-tRNA synthetase of Thermotoga maritima, residues 2-873 are 43% similar to dbj|BAB06757.1| valyl-tRNA synthetase of Bacillus halodurans, residues 6-866 are 44% similar to pir||SYBSVS valine--tRNA ligase of Bacillus stearothermophilus.","
InterPro
IPR001412
Family
Aminoacyl-tRNA synthetase, class I
PS00178\"[43-54]TAA_TRNA_LIGASE_I
InterPro
IPR002300
Domain
Aminoacyl-tRNA synthetase, class Ia
PF00133\"[15-573]TtRNA-synt_1
InterPro
IPR002303
Family
Valyl-tRNA synthetase, class Ia
PR00986\"[36-47]T\"[231-248]T\"[346-359]T\"[452-473]T\"[485-503]TTRNASYNTHVAL
PTHR11946:SF5\"[7-876]TtRNA-synt_val
TIGR00422\"[3-856]TvalS
InterPro
IPR009008
Domain
ValRS-IleRS-LeuRS editing
SSF50677\"[190-342]TValRS_IleRS_edit
InterPro
IPR009080
Domain
Aminoacyl-tRNA synthetase, class 1a, anticodon-binding
SSF47323\"[584-807]TtRNAsyn_1a_bind
InterPro
IPR010978
Domain
tRNA-binding arm
SSF46589\"[808-873]TtRNA_binding_arm
InterPro
IPR013155
Domain
tRNA synthetase, valyl/leucyl, anticodon-binding
PF08264\"[613-759]TAnticodon_1
InterPro
IPR014729
Domain
Rossmann-like alpha/beta/alpha sandwich fold
G3DSA:3.40.50.620\"[4-572]TRossmann-like_a/b/a_fold
noIPR
unintegrated
unintegrated
G3DSA:1.10.730.10\"[573-701]TG3DSA:1.10.730.10
PTHR11946\"[7-876]TPTHR11946
SSF52374\"[1-583]TSSF52374


","BeTs to 17 clades of COG0525COG name: Valyl-tRNA synthetaseFunctional Class: JThe phylogenetic pattern of COG0525 is amtkyqvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 633-744 are 41% similar to a (SYNTHETASE AMINOACYL-TRNA PROTEIN LIGASE BIOSYNTHESIS) protein domain (PD001183) which is seen in SYV_BACSU.Residues 122-198 are 57% similar to a (SYNTHETASE AMINOACYL-TRNA PROTEIN LIGASE BIOSYNTHESIS) protein domain (PD002670) which is seen in SYV_HAEIN.Residues 783-872 are 35% similar to a (VALYL-TRNA SYNTHETASE VALINE--TRNA LIGASE VALRS) protein domain (PD004138) which is seen in SYV_LACCA.Residues 520-596 are 49% similar to a (SYNTHETASE AMINOACYL-TRNA PROTEIN LIGASE BIOSYNTHESIS) protein domain (PD000476) which is seen in SYV_TREPA.Residues 335-416 are 51% similar to a (SYNTHETASE AMINOACYL-TRNA LIGASE PROTEIN BIOSYNTHESIS) protein domain (PD000647) which is seen in SYV_SYNY3.Residues 451-517 are 59% similar to a (SYNTHETASE VALYL-TRNA AMINOACYL-TRNA) protein domain (PD002917) which is seen in SYV_BORBU.Residues 17-120 are 50% similar to a (SYNTHETASE AMINOACYL-TRNA LIGASE PROTEIN BIOSYNTHESIS) protein domain (PD000389) which is seen in SYV_LACCA.Residues 199-334 are 52% similar to a (SYNTHETASE AMINOACYL-TRNA PROTEIN LIGASE BIOSYNTHESIS) protein domain (PD000939) which is seen in SYV_HELPY.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Feb 22 15:11:39 MST 2001","Mon Jan 5 12:43:50 2004","Thu Feb 22 15:11:39 MST 2001","","Thu Feb 22 15:11:39 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 253-754 are 21% similar to residues 339-926 of PG1395, a isoleucyl-tRNA synthetase. Residues 20-235 are 25% similar to residues 30-260 of this same protein, PG1395. Similarites are also seen to PG0717, a leucyl-tRNA synthetase. ","Mon Jun 4 10:22:03 MDT 2001","Thu Feb 22 15:11:39 MST 2001","-57% similar to PDB:1GAX CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS VALYL-TRNA SYNTHETASE COMPLEXED WITH TRNA(VAL) AND VALYL-ADENYLATE ANALOGUE (E_value = 6.1E_176);-57% similar to PDB:1IVS CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS VALYL-TRNA SYNTHETASE COMPLEXED WITH TRNA(VAL) AND VALYL-ADENYLATE ANALOGUE (E_value = 6.1E_176);-57% similar to PDB:1IYW Preliminary Structure of Thermus thermophilus Ligand-Free Valyl-tRNA Synthetase (E_value = 6.1E_176);-44% similar to PDB:1FFY INSIGHTS INTO EDITING FROM AN ILE-TRNA SYNTHETASE STRUCTURE WITH TRNA(ILE) AND MUPIROCIN (E_value = 4.2E_60);-44% similar to PDB:1QU2 INSIGHTS INTO EDITING FROM AN ILE-TRNA SYNTHETASE STRUCTURE WITH TRNA(ILE) AND MUPIROCIN (E_value = 4.2E_60);","","","Residues 15 to 573 (E-value = 1e-199) place PG1013 in the tRNA-synt_1 family which is described as tRNA synthetases class I (I, L, M and V) (PF00133)","Mon Jun 4 10:22:03 MDT 2001","34540861","","","","","","1","","","PG1132" "PG1014","1213714","1214163","450","ATGAAACCCAACGAAGTACAGATTCAGCTCGAACGCCTGTTCCGCACACCGATCGAACACCCCGACAGCTCCAAAACGGCACCGATAGCCATCAGTGATCTTTTCGTCCAAATAGATCCGGCTGCGGGGGAAGTACAGCTATTCAACGACAAAGACGAAGAACTTCATCGTGTGGTCATATACGATTGGATCCAAGAGGGACGAACGGAGATTCCGTCCGCAATGAGGCAGGAGCTTCGTGCTGCAGTCAAAAGGCTGCATGCAGCCCGATTCTTCGACAAAGACCAATTTGTACGCCCCTTCTCGGTGGCTCTGACACAGGAGGATTTCACGATTATCGAGGAATTGCTCTTCATCGACGACGAACTGATTCAGCTGGATTCGGCTCTGCTGGAAAATCTGGATGAAGAATTGAATAATTTTCTTGCCGAACTTCTTCCGGATATCAAA","4.30","-15.27","17388","MKPNEVQIQLERLFRTPIEHPDSSKTAPIAISDLFVQIDPAAGEVQLFNDKDEELHRVVIYDWIQEGRTEIPSAMRQELRAAVKRLHAARFFDKDQFVRPFSVALTQEDFTIIEELLFIDDELIQLDSALLENLDEELNNFLAELLPDIK","1213714 1214163","TIGR ID: PG1133","hypothetical protein","Cytoplasm","No significant hits in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Feb 7 17:11:43 MST 2001","Wed Feb 7 17:11:43 MST 2001","Wed Feb 7 17:11:43 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","-55% similar to PDB:1JOF Neurospora crassa 3-carboxy-cis,cis-mucoante lactonizing enzyme (E_value = );","","","No significant hits to the Pfam 11.0 database","","34540862","","","","","","1","","","PG1133" "PG1016","1214493","1215431","939","ATGTCAGAACATGCACGCTGTCTCATCATCGGTTCCGGACCTGCCGGCTATACCGCAGCTATCTATGCTTCTCGTGCCAACCTCAACCCCATCCTCTACGAAGGGATACAACCCGGCGGTCAGCTAACGACTACGACCGAGGTGGAAAACTTCCCGGGTTATCCCGAAGGAATCACCGGTACGGAACTGATGGAAGACCTGCGCAAACAAGCAACCCGCTTCGGAGCGGACATTCGTTCGGGTATCGCTACAAAAGCGGATTTGAGCAAGGCTCCTTACAGGATCACGATAGACGGAGAAAAGGAAATCACAGCCGATACGCTTATTATCTCCACGGGTGCCACAGCCAAATACTTAGGCTTGGCCGATGAAGCCAAATATGCCGGCATGGGTGTTTCTGCTTGTGCTACCTGTGATGGATTTTTCTATCGCAAGAAGAAAGTAGCCGTAGTGGGCGGAGGTGATACTGCTTGCGAGGAGGCTCTCTATCTGGCATCGCTGGCTGAACACGTGTACCTGATCGTACGCAAGAACTATCTCCGTGCCTCCAAGGTAATGCAGGAGCGTGTGATGAATACGGCGAACATAACCGTTCTCTTCGAACATAATACCGTGGGTCTATTCGGCGAAAACGGTGTGGAAGGTGCTCATCTGGTGAAACGCAAAGGAGAGCCGGACGAAGAGATGGTGGACATTGCCATCGATGGTTTTTTCCTCGCTATCGGTCATACGCCAAACTCGAAGATCTTCGCCGACTACCTCGACTTGGACGAAGTGGGTTATATCCTGACGGAAGGTTCGTCCCCGCGCACAAAAGTTCCCGGCGTATTTGCTGCCGGCGACGTTGCCGACCCACACTATCGTCAGGCTATCACGGCTGCCGGATCAGGTTGCAAGGCTGCTATCGAAGCAGAGCGTTATTTGGGCGAGCACGGTCTA","5.10","-9.53","33445","MSEHARCLIIGSGPAGYTAAIYASRANLNPILYEGIQPGGQLTTTTEVENFPGYPEGITGTELMEDLRKQATRFGADIRSGIATKADLSKAPYRITIDGEKEITADTLIISTGATAKYLGLADEAKYAGMGVSACATCDGFFYRKKKVAVVGGGDTACEEALYLASLAEHVYLIVRKNYLRASKVMQERVMNTANITVLFEHNTVGLFGENGVEGAHLVKRKGEPDEEMVDIAIDGFFLAIGHTPNSKIFADYLDLDEVGYILTEGSSPRTKVPGVFAAGDVADPHYRQAITAAGSGCKAAIEAERYLGEHGL","1214493 1215431","TIGR ID: PG1134","NADPH thioredoxin reductase","Cytoplasm","This sequence is similar to CT099. No significant hits in gapped BLAST.","
InterPro
IPR000103
Domain
Pyridine nucleotide-disulphide oxidoreductase, class-II
PR00469\"[6-28]T\"[39-54]T\"[60-70]T\"[106-114]T\"[128-140]T\"[143-167]T\"[195-211]T\"[236-257]T\"[271-289]TPNDRDTASEII
InterPro
IPR000759
Family
Adrenodoxin reductase
PR00419\"[6-28]T\"[148-162]TADXRDTASE
InterPro
IPR001327
Domain
Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region
PD000139\"[112-180]TFAD_pyr_redox
PF00070\"[147-242]TPyr_redox
InterPro
IPR005982
Domain
Thioredoxin reductase
TIGR01292\"[5-308]TTRX_reduct
InterPro
IPR008255
Active_site
Pyridine nucleotide-disulphide oxidoreductase, class-II, active site
PS00573\"[135-155]TPYRIDINE_REDOX_2
InterPro
IPR013027
Domain
FAD-dependent pyridine nucleotide-disulphide oxidoreductase
PR00368\"[6-28]T\"[108-117]T\"[147-172]T\"[235-249]T\"[276-283]TFADPNR
PF07992\"[6-287]TPyr_redox_2
noIPR
unintegrated
unintegrated
G3DSA:3.50.50.60\"[3-308]TG3DSA:3.50.50.60
PTHR22912\"[8-311]TPTHR22912
SSF51905\"[1-310]TSSF51905


","BeTs to 17 clades of COG0492COG name: Thioredoxin reductase/alkyl hydroperoxide reductaseFunctional Class: OThe phylogenetic pattern of COG0492 is amtkYQVcEBrhUJgpolinXNumber of proteins in this genome belonging to this COG is 2","***** IPB000103 (Pyridine nucleotide-disulphide oxidoreductase class-II) with a combined E-value of 6e-84. IPB000103A 6-30 IPB000103B 39-53 IPB000103C 119-161 IPB000103D 236-247 IPB000103E 271-307 IPB000103A 147-171","Residues 8-304 are 49% similar to a (OXIDOREDUCTASE FLAVOPROTEIN FAD REDUCTASE REDOX-ACTIVE) protein domain (PD000139) which is seen in O22229_ARATH.Residues 9-63 are 54% similar to a (REDUCTASE FLAVOPROTEIN REDOX-ACTIVE) protein domain (PD001422) which is seen in TRXB_MYCPN.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Mar 22 12:19:45 MST 2000","Mon Feb 12 09:29:02 MST 2001","Mon Feb 12 09:29:02 MST 2001","Wed Mar 7 11:24:57 MST 2001","Mon Feb 12 09:29:02 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 8-304 are 36% similar to PG0557, a predicted alkyl hydroperoxide reductase subunit F. Weaker similarities are seen to PG1776 and PG0721, a predicted pyruvate dehydrogenase E3 component (dihydrolipoamide dehydrogenase). This sequence is similar to BT4336.","Mon Jan 5 12:39:12 2004","Tue Jul 22 15:52:15 2008","-69% similar to PDB:1CL0 CRYSTAL STRUCTURE OF REDUCED THIOREDOXIN REDUCTASE FROM ESCHERICHIA COLI. (E_value = 1.7E_81);-69% similar to PDB:1TDE CRYSTAL STRUCTURE OF ESCHERICHIA COLI THIOREDOXIN REDUCTASE REFINED AT 2 ANGSTROM RESOLUTION: IMPLICATIONS FOR A LARGE CONFORMATIONAL CHANGE DURING CATALYSIS (E_value = 1.7E_81);-69% similar to PDB:1F6M CRYSTAL STRUCTURE OF A COMPLEX BETWEEN THIOREDOXIN REDUCTASE, THIOREDOXIN, AND THE NADP+ ANALOG, AADP+ (E_value = 2.4E_80);-69% similar to PDB:1TDF CRYSTAL STRUCTURE OF ESCHERICHIA COLI THIOREDOXIN REDUCTASE REFINED AT 2 ANGSTROM RESOLUTION: IMPLICATIONS FOR A LARGE CONFORMATIONAL CHANGE DURING CATALYSIS (E_value = 2.4E_80);-69% similar to PDB:1TRB CONVERGENT EVOLUTION OF SIMILAR FUNCTION IN TWO STRUCTURALLY DIVERGENT ENZYMES (E_value = 2.4E_80);","","","Residues 6 to 292 (E-value = 3.4e-62) place PG1016 in the Pyr_redox family which is described as Pyridine nucleotide-disulphide oxidoreductase (PF00070)","Wed Mar 7 11:24:57 MST 2001","34540863","","","","","","1","","","PG1134" "PG1017","1216003","1216614","612","ATGGAAAATAACGATAGATTGAACTCGCTTTGGGCTAAAAAGATCAAAAGGCTGGTCGATTTTTGTCTCGCATTGATTTTTTTAGCTATTTCCCTGCCTTTTATGCTGATCATAGCTTTGATCATTTTCCTGCAAGACGGGGGGGCTGCAATCTTCTCACAAGAACGCATCGGTCTTGGAGGAAAGCCTTTCATGCTATATAAGTTTCGCTCAATGAAGGTGAATGCAGAAGCCAACAATCAGCCTCAGCTATTCCAGAAAAATGATTCGAGGCTGACAAAGTTCGGTCGTTTCCTGAGAGCTTCTCACTTGGATGAGTTACCCCAATTCTGGAATATCATCAAAGGCGATATGGCTATCGTAGGCTACAGGCCTGAAAGGGAATATTACATCTGCCAAATAATGGAAAAGAATCCGGACTACGCCCTACTGTACGAAATAAGGCCGGGTCTGTTTTCCTATGCTACGCTGTACAACGGCTATACGGATACGATAGAAAAAATGCTGGTGCGTCTGGAGATGGATTTGATATACTTGCAAAAAATCAGTTTCTGCTATGATGCAAAGATTGCGATACAGACAATTTCTTCTATCCTAATCGGGAAGAAAGTA","9.80","6.09","23676","MENNDRLNSLWAKKIKRLVDFCLALIFLAISLPFMLIIALIIFLQDGGAAIFSQERIGLGGKPFMLYKFRSMKVNAEANNQPQLFQKNDSRLTKFGRFLRASHLDELPQFWNIIKGDMAIVGYRPEREYYICQIMEKNPDYALLYEIRPGLFSYATLYNGYTDTIEKMLVRLEMDLIYLQKISFCYDAKIAIQTISSILIGKKV","1215934 1216614","TIGR ID: PG1135","glycosyltransferase","Inner membrane, Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 15-195 are 41% similar to gb|AAG01983.1|AF238861_3 putative glycosyltransferase of Lactobacillus rhamnosus, residues 36-199 are 43% similar to dbj|BAB07369.1| teichuronic acid biosynthesis (glycosyltransferase) of Bacillus halodurans, residues 7-201 are 36% similar to gb|AAD12958.1| unknown of Leptospira borgpetersenii.","
InterPro
IPR003362
Family
Bacterial sugar transferase
PF02397\"[16-203]TBac_transf


","BeTs to 4 clades of COG2148COG name: Sugar transferases involved in lipopolysaccharide synthesisFunctional Class: MThe phylogenetic pattern of COG2148 is ------vCeB-h---------Number of proteins in this genome belonging to this COG is 2","***** BP03658 (TRANSFERASE TRANSMEMBRANE EXOPOLYSACCHARIDE PR) with a combined E-value of 8.9e-42. BP03658A 16-41 BP03658B 48-72 BP03658C 87-134 BP03658D 158-204","Residues 40-141 are 46% similar to a (TRANSFERASE PROTEIN TRANSMEMBRANE) protein domain (PD001742) which is seen in O32274_BACSU.","","Wed Jun 13 13:55:36 MDT 2001","","Wed Jun 13 13:56:26 MDT 2001","Wed Jun 13 13:56:26 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Jun 13 13:56:26 MDT 2001","Wed Jun 13 13:56:26 MDT 2001","","","Fri May 4 17:34:03 MDT 2001","Tue Jun 19 10:05:24 MDT 2001","Mon Feb 12 09:45:33 MST 2001","Tue Jun 19 09:56:09 MDT 2001","Tue Jun 19 09:56:09 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 12-201 are 42% similar to PG1715, a probable glycosyltransferase.","Wed Jun 13 14:00:34 MDT 2001","Thu Feb 22 15:19:09 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 16 to 203 (E-value = 3.5e-22) place PG1017 in the Bac_transf family which is described as Bacterial sugar transferase (PF02397)","Tue Jun 19 09:56:09 MDT 2001","34540864","","","","","","1","","","PG1135" "PG1018","1218420","1216795","1626","ATGAAAATAGTCTCAGACTTCACTCTTGTGCTTCCTAATAAAGATATTGATATATCAGTCGGTTATTCCGCAGGTTTTATTTTTGATGGAAACAGACATCTCACATCCCAAGAGCTGCAAGCCTTTTTTCAGGAGGCATCGGATTGGGATGACTTCCTTTCCCGAGCTAAGCGTATTACAGGAGAATGGGCTGTCGTATTCCAACGTGCCGAAGGCGAAGTCTGGGCTGCCACCGACCATCGCTCTTCTCAGAGACTCTATTTCCGTCTTGCGGCGGACGGACTCCGTATGGCAGAAAACGGTTACTCACTGTTCACCGAGCGAGATAGCTGGGATGGTGACGCTGTTCTCTTTTTCTTGCGTTGGGGTTATACACCTGCTGATAGCACATTGATCCGCGAAATACGGAAACTTCCCCCCGGCCATGCCCTACGCTATAGAGTCGGAGAGGGTATTACGACCACTGCCTATGACACAGTAGACCGATATGCCCCGTTTGACAGCCATCTTTTATCTTATGAAGAGGCTAAAGAGGAACTGAAGCACCGCCTTATTCTTGCCGGCAAGAGACTCGTTCGCTACCTGAATGGCAGATCGGCCATACTTCCCCTTTCCGGAGGATTCGACTCGCGGATGATAGCCTACATGCTGCATCGTCTGAAGTACCCACATGTCTATTGTATCTCCTATGGCAAAGAGGAAAATCCTGATAGCTTGAAAGCTGCTAAAGTGGCGGACAAACTCGGCTTTCCATTCGTCTATATCAACAGTGTACGACCCGATCGTTCCGACTATACGCAGGATGCTGAGTTCCTGTCTTATATGTACAACATGACCGGACTATCCTCCTGCTATTACTACCAAGAGTTCATCGCGGCTGCAAGTATCGCGTCCGGATCAGTGCACAACGGTATGGTTTCATTCCCATCGAATGCTGTTGTTTTACCCGGTCATCAGGGAGACGATTTGGGTGGTTCACAGCTGATGTATTCCCGTTTGGCAGAAAGCAAACTTTCGCCCAACGAGCTGTCGCGTATCCTCTACTCCCACAAGCAGATGAATCAGCAGTTCGACAGGAAGCAAAAGGAACGATTACTATCCATACAGGCAAAGCTGTTTTCCTCCTACGACAAGGAACAACAACCTGCTTATCGCACTTTCGAGCAGTATATGCAGTGGGAAAACATCCCTAAGTATATGCTCAACAGCCAGCAATCATGGCGATTCTTCGGATTAGATACGGTTTGTATGCTTCTCGATAAGGAATTGCTTGACTTTGCCTACTCTCTTCCCTTCGAATACCGCTACGGAAAGCGTATCTATGATGATATTTGTCGTGAACTGTATGGCGAGAAAGGCATTTCTTTTTCGGACGATTTGAACCTGCATGGCATTATCTCTTCTCCTGTTTACCGACTCAAACGATCTCTAAAGCCTTTGCTTCGACCATTTATACCCCGTCCTTCGATTTGGAAAGGCGATATTATCGGTTTTGAACGGATCATGCAACCTGTATTACGACAGGTAGAGCAAGACGGACGTTTCCACCCGACATCTATAAATGGGTTATCCTTCTGCTGGTATCTGCTTCAAAACGAAAAATTGATTGACCGCCCTCTGCCTCTC","7.60","2.69","62725","MKIVSDFTLVLPNKDIDISVGYSAGFIFDGNRHLTSQELQAFFQEASDWDDFLSRAKRITGEWAVVFQRAEGEVWAATDHRSSQRLYFRLAADGLRMAENGYSLFTERDSWDGDAVLFFLRWGYTPADSTLIREIRKLPPGHALRYRVGEGITTTAYDTVDRYAPFDSHLLSYEEAKEELKHRLILAGKRLVRYLNGRSAILPLSGGFDSRMIAYMLHRLKYPHVYCISYGKEENPDSLKAAKVADKLGFPFVYINSVRPDRSDYTQDAEFLSYMYNMTGLSSCYYYQEFIAAASIASGSVHNGMVSFPSNAVVLPGHQGDDLGGSQLMYSRLAESKLSPNELSRILYSHKQMNQQFDRKQKERLLSIQAKLFSSYDKEQQPAYRTFEQYMQWENIPKYMLNSQQSWRFFGLDTVCMLLDKELLDFAYSLPFEYRYGKRIYDDICRELYGEKGISFSDDLNLHGIISSPVYRLKRSLKPLLRPFIPRPSIWKGDIIGFERIMQPVLRQVEQDGRFHPTSINGLSFCWYLLQNEKLIDRPLPL","1218420 1216795","TIGR ID: PG1136","conserved hypothetical protein","Cytoplasm","One weak hit in gapped BLAST; e.g. residues 58-234 are 25% similar to gbAAG06847.1AE004766_8 probable glutamine amidotransferase of Pseudomonas aeruginosa. ","
InterPro
IPR001962
Domain
Asparagine synthase
PF00733\"[179-494]TAsn_synthase
InterPro
IPR014729
Domain
Rossmann-like alpha/beta/alpha sandwich fold
G3DSA:3.40.50.620\"[165-492]TRossmann-like_a/b/a_fold
noIPR
unintegrated
unintegrated
SSF52402\"[162-462]TSSF52402
SSF56235\"[37-163]TSSF56235


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Fri Sep 10 17:53:53 2004","Fri Sep 10 17:53:53 2004","Mon Feb 12 11:40:10 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Sep 10 17:53:53 2004","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540865","","","","","","1","","","PG1136" "PG1019","1219690","1218386","1305","ATGACAAAAGAGGAGGGAGGCTCGTCTATGAAGCAAGGACGAAGTTCCATGATGGCAAACAGCATGAAACTGATCAGCGCCGGTACCTTTGTACAGGTATTGGCTTTCCTGCTGTTGCCTGTTATCGGACGTATCTATACCGAATCCGAAATCGGTCAAATTACCGTTTTCCTTTCTGTGGTGGGTGTACTCACGATCGTTGCCACAGGACGTTATGATCAAGCCACCATATTGGCACGATCGAAAGAACGAGCTCTACTGCTGCTGTTTACGGCTCTTCGGTTCAATTTGATCTTCTGTTTAGCTCTCATTCCTGCAGTCCTGATTATCAATCCTTTTCTAACGGATTCACGCTATAGCGGACAGCAAACTCATTTATTCTTGCTTCCCTTCTTCGTCTTCTTTGCTGCAGGAGTAATCTCCCTGTTGTCATGGGCTAATTCGCACAATCAATATGGTCGAATGAGTATTGCGCAGATCAGCCAAGGTCTGGGCAATAATCTGCTTCGAATAGGTTTCGGTCTCCTCAAAATGGGCTTTTGGGGGCTTCAACTTGCAGCCTTGCTCGGAGGTATGGCAGGTATCTTTCCTCTTGTGCGCAAGCAGGCTCTTCTATCCCAATACAAGCGATACGTTACCCGCCGGCGTCTTCGAATAGCTGCCCGTACATATGCCAATTTCCCACGCTATTCATTACCGCAGGCCGTTATAGATATCTTGTCCGGTAGTCTTGTATCCTTGCTCTTACCTCTCCAGTACCACGATGCAGCCATCGGGTTGTATGGTATGGCCTATATGCTTGCCGGTAGGCCCATGCAGCTCATCAGCGATTCGCTCAGCCGTGTTTGGTTCAGGCGAGTGGCCGAACAGAAGAATACCCGACAGTCCTTCCTCCTTCCGATTCGTCGGTTCGTCTTCATTTGGCTTTTAGTCGCTGTACTGGGTTCCATCCTCATTTTTTTCTTTTTGGAGCCACTTGTCGTTGTCATTTTGGGAAAGAAATGGCTACTGTGCTCATCCATTATAATGGCTATGCTACCATTTTTTATCTTCAATTTTCTCTCTTCCGTATATAATTTCCTACCCGATTTATTTGGAAAGCAGCAAAAATTCATGAGAATGCAGGCCATTCTGCTCATTGTTCAGTTGCTCGTTATCCTGATAGGAACGCGATTGCTCCCTTTCGAAAAATATATGTGGCTGCATTTTGCTGAGCGTGCACTTGATTCCCTCGTGCAGATAGCATGGTTCTATATGATTATCCGCAAATATGAAAATAGTCTCAGACTTCACTCTTGTGCTTCC","11.30","27.05","49323","MTKEEGGSSMKQGRSSMMANSMKLISAGTFVQVLAFLLLPVIGRIYTESEIGQITVFLSVVGVLTIVATGRYDQATILARSKERALLLLFTALRFNLIFCLALIPAVLIINPFLTDSRYSGQQTHLFLLPFFVFFAAGVISLLSWANSHNQYGRMSIAQISQGLGNNLLRIGFGLLKMGFWGLQLAALLGGMAGIFPLVRKQALLSQYKRYVTRRRLRIAARTYANFPRYSLPQAVIDILSGSLVSLLLPLQYHDAAIGLYGMAYMLAGRPMQLISDSLSRVWFRRVAEQKNTRQSFLLPIRRFVFIWLLVAVLGSILIFFFLEPLVVVILGKKWLLCSSIIMAMLPFFIFNFLSSVYNFLPDLFGKQQKFMRMQAILLIVQLLVILIGTRLLPFEKYMWLHFAERALDSLVQIAWFYMIIRKYENSLRLHSCAS","1219690 1218386","The primary evidence and the gapped BLAST hit to P.gingivalis indicate that PG1019 can be given the gene name porS, although no definition of the protein is provided by these sources.TIGR ID: PG1137","PorS protein","Inner membrane, Cytoplasm","Residues 1-435 are 81% similar to a previously sequenced P.gingivalis protein in GenBank, BAA31965.Two significant hits in gapped BLAST; e.g. residues 15-376 are 21% similar to gb|AAB49440.1| Cap8K of Staphylococcus aureus, residues 15-360 are 21% similar to gb|AAG06541.1|AE004739_3 O-antigen translocase of Pseudomonas aeruginosa.","
InterPro
IPR002797
Family
Polysaccharide biosynthesis protein
PF01943\"[17-291]TPolysacc_synt


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 1-83 are identical to a (PORS PROTEIN) protein domain (PD182510) which is seen in O86166_PORGI.Residues 137-376 are 89% similar to a (PROTEIN PORS WBPF CAP8K) protein domain (PD040837) which is seen in O86166_PORGI.Residues 389-435 are identical to a (PORS PROTEIN) protein domain (PD182509) which is seen in O86166_PORGI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Mon Feb 12 15:49:36 MST 2001","Tue Feb 27 17:11:00 MST 2001","Mon Feb 12 15:22:03 MST 2001","Mon Feb 12 14:33:41 MST 2001","","Mon Feb 12 15:22:03 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 27 17:06:24 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Fri May 4 17:41:48 MDT 2001","34540866","Tue Feb 27 17:12:50 MST 2001","Nakayama,K. and Ratnayake,D.B. Identification, cloning and sequencing of a gene (porR) responsible for black pigmentation and extrecellular protease production of Porphyromonas gingivalis. Unpublished. Nakayama,K. porR and porS genes of Porphyromonas gingivalis. Unpublished.","","Mon Feb 12 15:22:03 MST 2001","","1","","","PG1137" "PG1020","1220841","1219690","1152","ATGCCTACTTCCATTTCCCAGCCAATTGTGATGGTGGATCTGAAAAAGCAGTATCTGCAGATGAAAAAACAGATCGATGAAGCCATCCATACAGTTATCGATAGTACAGCTTTTATCAACGGAAAAGAAGTACATGCTTTTGCGGAAGATTTGGCAGCCTATTTGGGTGTAAAGCATGTAATCCCTTGCGCCAATGGTACAGACGCATTGCAAATCAGTCTGATGGCTTTGGGATTGAAAGTCGGAGATGAGATCATTGTGCCCGATTTCACTTATGCAGCAAGTGCCGAAGCTATAGGTTTGTTAGGATTAACACCTGTTTTCGCTGATGTAGACCCTATTACATTTAATCTTACATCTAAGGGCTGCGAAAAAGTTCTGTCCGACAAGACGAAAGCAATCATACCAGTACACCTCTTTGGGCAGTCCTGCGATATGGAGCCGCTTTTGGCCTTTGCCAAGCGAAACGATTTGTTTGTTATCGAAGACAATGCTCAGGCAATGGGAGGGGGATATACTATCTCCGATGGATCTATCCGAAAAACAGGAACAATGGGGCATATAGGCTGTGCTTCCTTCTTTCCATCGAAGAATTTGGGTTGTTATGGAGACGGTGGTGCTGTCACAACAAATGATGACGAATTGGCAAAGCGAGTGCGAATGATAGCGAACCATGGCCAAAAGATCAAATACAAACATGACATTATCGGATGCAATTCCCGACTCGATACTATTCAAGCGGCCATCCTCAGAGTAAAATTGCAATATTTGGACCGCTTCAATGCACTTCGGAATGAGGTCGCCTCACACTATACCTCTCTGCTCGAAGGTATTGAATGGCTACAAACACCGACCTCCTTGCAGCAGTCTTCGCATGTTTATCATCAATATACTCTTAAGCTCTTGGATCAGAACACTCGCGATGGACTGCGAGAGCATCTGACGAATCATAAGATCGCTTCGATGATATACTACCCGATACCACTCCACAGGCAACCGGCATTCGTCGGTATTGCTCATTGGGGTGAATCTTTGGATGTGTCCGACTCTTTGTCGCGAACTGTTCTCTCCATCCCCATCTATCCGGAAATGGAGATAGAGCAAATCCATGCTGTGGTATCAGCAATCAAAACATTCGAACCGTCTTTACAA","6.50","-4.66","42299","MPTSISQPIVMVDLKKQYLQMKKQIDEAIHTVIDSTAFINGKEVHAFAEDLAAYLGVKHVIPCANGTDALQISLMALGLKVGDEIIVPDFTYAASAEAIGLLGLTPVFADVDPITFNLTSKGCEKVLSDKTKAIIPVHLFGQSCDMEPLLAFAKRNDLFVIEDNAQAMGGGYTISDGSIRKTGTMGHIGCASFFPSKNLGCYGDGGAVTTNDDELAKRVRMIANHGQKIKYKHDIIGCNSRLDTIQAAILRVKLQYLDRFNALRNEVASHYTSLLEGIEWLQTPTSLQQSSHVYHQYTLKLLDQNTRDGLREHLTNHKIASMIYYPIPLHRQPAFVGIAHWGESLDVSDSLSRTVLSIPIYPEMEIEQIHAVVSAIKTFEPSLQ","1220841 1219690","The primary evidence indicates that PG1020 has been given the gene name porR, but no exact definition of the protein is given. A porR mutant of Pophyromonas gingivalis shows reduced expression of RGP and KGP, less pigmentation of its colonies, and no hemagglutination; regulatory protein for pigmentation and extracellular proteinase production [Porphyromonas gingivalis].TIGR ID: PG1138","PorR protein","Cytoplasm","PG1020 is identical to a previously sequenced P.gingivalis protein in GenBank, BAA31964.Numerous significant hits in gapped BLAST; e.g. residues 9-397 are 45% similar to pir||I39836 probable hydro-lyase of Bacillus stearothermophilus, residues 9-383 are 42% similar to dbj|BAA18786.1| pleiotropic regulatory protein of Synechocystis sp., residues 9-379 are 40% similar to gb|AAD35750.1|AE001739_13 pleiotropic regulatory protein of Thermotoga maritima.","
InterPro
IPR000653
Family
DegT/DnrJ/EryC1/StrS aminotransferase
PIRSF000390\"[13-384]TPLP_StrS
PF01041\"[19-377]TDegT_DnrJ_EryC1
InterPro
IPR015421
Domain
Pyridoxal phosphate-dependent transferase, major region, subdomain 1
G3DSA:3.40.640.10\"[7-254]TPyrdxlP-dep_Trfase_major_sub1
InterPro
IPR015422
Domain
Pyridoxal phosphate-dependent transferase, major region, subdomain 2
G3DSA:3.90.1150.10\"[257-377]TPyrdxlP-dep_Trfase_major_sub2
InterPro
IPR015424
Domain
Pyridoxal phosphate-dependent transferase, major region
SSF53383\"[11-379]TPyrdxlP-dep_Trfase_major
noIPR
unintegrated
unintegrated
PTHR11751\"[66-135]TPTHR11751
PTHR11751:SF35\"[66-135]TPTHR11751:SF35


","BeTs to 10 clades of COG0399COG name: Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesisFunctional Class: MThe phylogenetic pattern of COG0399 is -mT--qVCEBR-uj---L---Number of proteins in this genome belonging to this COG is 1","***** PF01041 (DegT/DnrJ/EryC1/StrS family) with a combined E-value of 2e-52. PF01041A 107-161 PF01041B 177-201 PF01041C 203-226","Residues 46-238 are identical to a (PYRIDOXAL PHOSPHATE AMINOTRANSFERASE TRANSFERASE PROTEIN) protein domain (PD000087) which is seen in O50320_PORGI.Residues 1-45 are identical to a (PORR PROTEIN) protein domain (PD090046) which is seen in O50320_PORGI.Residues 239-293 are identical to a (PROTEIN BIOSYNTHESIS DNA-BINDING) protein domain (PD001200) which is seen in O50320_PORGI.Residues 294-377 are identical to a (PROTEIN BIOSYNTHESIS DNA-BINDING) protein domain (PD002530) which is seen in O50320_PORGI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Fri May 4 17:46:20 MDT 2001","Tue Feb 27 17:20:44 MST 2001","Mon Feb 12 15:45:32 MST 2001","Mon Feb 12 15:45:32 MST 2001","Tue Feb 27 17:08:15 MST 2001","Mon Feb 12 15:45:32 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 27 17:08:15 MST 2001","-52% similar to PDB:2C7T CRYSTAL STRUCTURE OF THE PLP-BOUND FORM OF BTRR, A DUAL FUNCTIONAL AMINOTRANSFERASE INVOLVED IN BUTIROSIN BIOSYNTHESIS. (E_value = 3.8E_33);-52% similar to PDB:2C81 CRYSTAL STRUCTURES OF THE PLP- AND PMP-BOUND FORMS OF BTRR, A DUAL FUNCTIONAL AMINOTRANSFERASE INVOLVED IN BUTIROSIN BIOSYNTHESIS. (E_value = 3.8E_33);-46% similar to PDB:1MDO Crystal structure of ArnB aminotransferase with pyridomine 5' phosphate (E_value = 2.7E_31);-46% similar to PDB:1MDX Crystal structure of ArnB transferase with pyridoxal 5' phosphate (E_value = 2.7E_31);-46% similar to PDB:1MDZ Crystal structure of ArnB aminotransferase with cycloserine and pyridoxal 5' phosphate (E_value = 2.7E_31);","","","Residues 19 to 377 (E-value = 2.1e-139) place PG1020 in the DegT_DnrJ_EryC1 family which is described as DegT/DnrJ/EryC1/StrS aminotransferase family (PF01041)","Fri May 4 17:46:20 MDT 2001","34540867","Tue Feb 27 17:20:44 MST 2001","Nakayama,K. and Ratnayake,D.B. Identification, cloning and sequencing of a gene (porR) responsible for black pigmentation and extrecellular protease production of Porphyromonas gingivalis. Unpublished. Nakayama,K. porR and porS genes of Porphyromonas gingivalis. Unpublished. ","","Mon Feb 12 15:45:32 MST 2001","","1","","","PG1138" "PG1021","1222157","1221024","1134","TTGACGAATATGAAGCAATTATGCCTAATCTGCTTGGCTTTCATCTGCCTTTTTTTTCTCGATAGCTGTGGTAACAAAAATACATTTCGTGTCGAAGGGTCGATTGCCGGTTATGAAGACACCGCACAAGTGTATCTGACCAAGATCATTGGGAGCGATCTTTCTGTACTCGATTCTGTAAATCCTGACCGAAAAGGTCGTTTCAGTTTTGTAGCACAAGCGGACTCCACACCGTCTTTCTACCAGATTAAACTCAGGAAGCAACATATTAATTTTGCCGCAAGGATCGGATCGGAAATCAACATACAGGTGGGTCGTAACAGCTTTTCCGATTACGTTATTGAAGACAACCAAGGGCCTGACAATAACAATATTCGCAAGATTGCGCTATTGAAAGAGCAAGCGGATAATCGTTTGGATCATTTGTACCGTTCATACCAAGAGAACAAACTGGATGCTTCGCAGTATCAAGACACCATAGCGAAGGTGATAGATGAGTTTAAGACCACATTGCGCAACGATTTCATCTTCCAAGATCCCAAGTCACCAGCTTCATACTTTGCACTATTCCAACAGAAAGACGGCCTCCTATATTTCAATGTCTATGATCCTATGGATGCTAAGGCTTTTGCTGCGGTAGCTACAGCTTACGATACTTATTACCCAACCTCGTCTTACACCAAAAGTGTTCGTGATCTTTCTCTATTGGGTATTGCTGCCATGCGGAGAGATCGTGTGGCAAAGGATATTACTACTCGCAAAATAGAAGTCAAAGACATTCCGGAAACAATTCTGATTGATCGCAAAGGCAATGAACAACCACTCTCAAAGGTCGTAGAAACGAATGATAGGGTGTTGATAGTATTTACCTCCTATCAGGCTGAATGGTCACCCTCTTTGGTAAAAGAACAGCGAGCACTGTATCAACGACATTGCAACAATGGATTTCAGATATATGAGATTTCTGTCGACAAGGACTTGTATTTCTGGCAGAATGCAACGCGTACACTCCCTTGGATCACAGTGAACGATAGCGAAGGGAAAGCAGCTTTGTCATTCAATGTCAGATCATTGCCAACATTTTTCCTAATCCAAGATGGCGAGCTTAAACGTCTCCAAAGATTGGAAAGTCTC","7.30","0.50","43360","LTNMKQLCLICLAFICLFFLDSCGNKNTFRVEGSIAGYEDTAQVYLTKIIGSDLSVLDSVNPDRKGRFSFVAQADSTPSFYQIKLRKQHINFAARIGSEINIQVGRNSFSDYVIEDNQGPDNNNIRKIALLKEQADNRLDHLYRSYQENKLDASQYQDTIAKVIDEFKTTLRNDFIFQDPKSPASYFALFQQKDGLLYFNVYDPMDAKAFAAVATAYDTYYPTSSYTKSVRDLSLLGIAAMRRDRVAKDITTRKIEVKDIPETILIDRKGNEQPLSKVVETNDRVLIVFTSYQAEWSPSLVKEQRALYQRHCNNGFQIYEISVDKDLYFWQNATRTLPWITVNDSEGKAALSFNVRSLPTFFLIQDGELKRLQRLESL","1222157 1221024","TIGR ID: PG1139","hypothetical protein","Outer membrane, Cytoplasm","No significant hits in gapped BLAST.","
InterPro
IPR012335
Domain
Thioredoxin fold
G3DSA:3.40.30.10\"[260-371]Tno description
noIPR
unintegrated
unintegrated
signalp\"[1-24]?signal-peptide
tmhmm\"[7-25]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon Feb 12 15:59:13 MST 2001","Mon Feb 12 15:59:13 MST 2001","Mon Feb 12 15:59:13 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540868","","","","","","1","","","PG1139" "PG1022","1223128","1222271","858","ATGAAGAGTGCATGTTCGATTATTACTGCTTCAATCGTACTTTATAAAAGCAAACCGGATATTATTCGGGATGTCATTACCTCCTTTTTCTCTGATACGGTAACTAAGAAGAAGCTTATCCTCATAGACAATTCTCCGACTGACAGTCTTCGTGTCCTCCAAGAAGAAAGACCGGAGGATATTCAGTATTTCTTTAATAACCGCAATATAGGATTCGGATCAGCTCACAATATCGGTATTAGAGAGGCAGCTCGCTTCAATCCTTCTTATCATTTAATTCTTAATCCTGATGTGCAGTTTGGCCCTGAAGTGGTGCCGACATTGGCTTCATACATGGACGAGAATCCTGATATAGGATTGTTGATGCCACAAGTCTATTATCCTAATGGCGAATTGCAGCACTTATGCAAGTTGTTTCCACGTCCATGGGATGTTATGCTCAGGCGATTTGTCCCTTATAGATCATATAGAGAAAGGAATAACGAACGATTCGAGCTGCGTAATTGGTCTTATGACACGATTCAGGACATCCCTTCGCTTTCGGGCTGTTTCATGTTTGCCCGAATGGATATTCTTAGAGAAGTAGGAGGGTTTGACGAACGCTTTTTTATGTATGCGGAAGATTTGGATCTATGCAGACGTATAGGGCAAGTATCTCGTACCGTTTTCTTCCCAAAAGTCTCTATTATGCACACCTACGCGAAAGGTTCTTATCATGATGCCAAACTGCTTCGGCACCACATCGTTTCTCTCATCCGTTACTTTAATAAATGGGGATGGCTTTTCGATGCCGAACGTCGTAGGGTCAATAGGGCATGTTTGGCAGTACTCCGCAATCAAACGACAGTGAAAAAAGAT","9.60","8.45","33628","MKSACSIITASIVLYKSKPDIIRDVITSFFSDTVTKKKLILIDNSPTDSLRVLQEERPEDIQYFFNNRNIGFGSAHNIGIREAARFNPSYHLILNPDVQFGPEVVPTLASYMDENPDIGLLMPQVYYPNGELQHLCKLFPRPWDVMLRRFVPYRSYRERNNERFELRNWSYDTIQDIPSLSGCFMFARMDILREVGGFDERFFMYAEDLDLCRRIGQVSRTVFFPKVSIMHTYAKGSYHDAKLLRHHIVSLIRYFNKWGWLFDAERRRVNRACLAVLRNQTTVKKD","1223137 1222271 [Delay by 129 1313 130 0]","TIGR ID: PG1140","probable rhamnosyltransferase","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 8-274 are 37% similar to gb|AAC70778.1| rhamnosyl transferase of Klebsiella pneumoniae, residues 7-274 are 35% simuilar to epsX of Acinetobacter calcoaceticus, residues 8-260 are 31% similar to gb|AAD52192.1|AF144879_31 unknown of Leptospira interrogans.","
InterPro
IPR001173
Domain
Glycosyl transferase, family 2
PF00535\"[9-196]TGlycos_transf_2
noIPR
unintegrated
unintegrated
G3DSA:3.90.550.10\"[8-237]TG3DSA:3.90.550.10
SSF53448\"[8-261]TSSF53448


","BeTs to 4 clades of COG1216COG name: Predicted glycosyltransferasesFunctional Class: RThe phylogenetic pattern of COG1216 is A-Tk----e-R----------Number of proteins in this genome belonging to this COG is 3","No significant hit to the Blocks database.","Residues 8-150 are 26% similar to a (HYPOTHETICAL 33.2 KD PROTEIN) protein domain (PD206421) which is seen in Q9ZGJ4_LEPBO.Residues 8-142 are 34% similar to a (TRANSFERASE PUTATIVE RHAMNOSYL GLYCOSYL) protein domain (PD016086) which is seen in Q9ZFN7_KLEPN.Residues 8-134 are 29% similar to a (GLYCOSYL TRANSFERASE TRANSFERASE) protein domain (PD097313) which is seen in P74817_BBBBB.Residues 171-257 are 48% similar to a (TRANSFERASE PROTEIN PUTATIVE GLYCOSYL) protein domain (PD002440) which is seen in O52481_SERMA.","","Wed Jun 13 13:40:13 MDT 2001","","Wed Jun 13 13:40:13 MDT 2001","Wed Jun 13 13:40:13 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Jun 13 13:40:13 MDT 2001","Wed Jun 13 13:40:13 MDT 2001","","","Mon May 7 16:15:03 MDT 2001","Tue Jun 19 10:14:22 MDT 2001","Mon Feb 12 16:12:26 MST 2001","","Tue Jun 19 10:09:50 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 41-258 are 32% similar to PG0238, a transferase protein. Weaker similarities are seen to PG1944.","Wed Jun 13 13:53:56 MDT 2001","Thu Feb 22 15:36:56 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 9 to 196 (E-value = 1.3e-14) place PG1022 in the Glycos_transf_2 family which is described as Glycosyl transferase (PF00535)","Tue Jun 19 10:09:50 MDT 2001","34540869","","","","","","1","","","PG1140" "PG1023","1224327","1223137","1191","GTGTTGCCACAGTCTTTTTCCTACAAAGTAATTCGACATAATATGATAACCGTTGCCCATCTGATCAATAACATTGTCCAATCAGGACCGGTGATAGTCATGCGCGACATCATTCGACACATGGATCGAGACAAATTCCATCCTATTGTCATTTGTTTGCGTCATGAGGAAAAAGAAGATCCGATAGTGAAAGAGCTAAGAGCTATAGACGTAAAATGTATTTACCTCAACTACAGCCTTCTTTCTTTGGAGCTACAGACCGGTAGGATAGCACGAAAGGTTTTGTCTGTGCTTCGCAACGAGAAAGCTCATATCCTCCATAGTCACGGATACCATCCTGATCTGATTGCCTCTCATTTGTCCCGGAATATAACAAGCCTAAGTACCCTCCATAACATCTCCAAGGACGACTTCACTTTCCTGAAGGGTAATTTATTGGGGAGCTACATGAATTTCCGCTACTTGCGTAGCCTTAGTAAGATAGGACATTATGTAGCGATAAGTAGAGCTGTAGCTGACTATTATGCATCGCATGTAAATAAAGCAAAAGAGAGAATACGTATTATCCACAATGGAGTAGATCTTTCTTTTTTCCAAATACCGGACGAAGATCATCAGAAACAGCTGCGACATCGATTAGGACTTCCAGTCTCCGGAAAAATCTTCCTTGTCGTGGGACGTCTGTTCTCTCGCAAGGATCCTCTCATCATTATTCGAGCCTTTAAATTCCTTTTAGAGAGCCAAAAATTGAGTGGCGATTTTTATCTCTTTTTTTTAGGTGACGGGCCATTGAGTGATGCTTGTCAAAAGGAAATTGGAGACAAGACCCATAATATCAGGTTATTGGGTTTTCAGAAAAATGTCCATGAATATATGATGGCAGCAGATTATGCCATCACGGCCTCTCACTCGGAGGGTTTCGGTCTGAATTATCTGGAGGCTACTGCTTGTGGAAAACCCGTTGTAGCCACTGATTTGCCTCCATTCAGAGAAATCTGCGGCACAGGCTTTCAGGACAACGAATTGTTTTTTTCTGTAGGAAACCAAAAAGAATTGGAGGATTGCATACTAAAAAGCCTTGGTCATACGTTCAACCCTCAAAAAGTCTCCGATATCAGGCATCATTTCTCTGCGGAAACAATGTCTGTACAATATCAGAACTATTATACGGAGCTATCAGCTCCACTAAAA","9.20","12.02","45365","VLPQSFSYKVIRHNMITVAHLINNIVQSGPVIVMRDIIRHMDRDKFHPIVICLRHEEKEDPIVKELRAIDVKCIYLNYSLLSLELQTGRIARKVLSVLRNEKAHILHSHGYHPDLIASHLSRNITSLSTLHNISKDDFTFLKGNLLGSYMNFRYLRSLSKIGHYVAISRAVADYYASHVNKAKERIRIIHNGVDLSFFQIPDEDHQKQLRHRLGLPVSGKIFLVVGRLFSRKDPLIIIRAFKFLLESQKLSGDFYLFFLGDGPLSDACQKEIGDKTHNIRLLGFQKNVHEYMMAADYAITASHSEGFGLNYLEATACGKPVVATDLPPFREICGTGFQDNELFFSVGNQKELEDCILKSLGHTFNPQKVSDIRHHFSAETMSVQYQNYYTELSAPLK","1224327 1223137","TIGR ID: PG1141","probable glycosyltransferase","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 16-389 are 23% similar to gb|AAG26476.1|AF285774_16 putative glycosyltransferase of Bacteroides fragilis, residues 16-325 are 26% similar to dbj|BAB07382.1| lipopolysaccharide biosynthesis of Bacillus halodurans, residues 18-393 are 24% similar to gb|AAD46732.1|AF078736_12 putative glycosyl transferase of Escherichia coli.","
InterPro
IPR001296
Domain
Glycosyl transferase, group 1
PF00534\"[206-360]TGlycos_transf_1
noIPR
unintegrated
unintegrated
PTHR12526\"[18-392]TGLYCOSYLTRANSFERASE
PTHR12526:SF41\"[18-392]TGLYCOSYLTRANSFERASE


","BeTs to 13 clades of COG0438COG name: Glycosyltransferases IFunctional Class: MThe phylogenetic pattern of COG0438 is AMTKYQVCEBRhUj--o---XNumber of proteins in this genome belonging to this COG is 9","***** PF00534 (Glycosyl transferases group 1) with a combined E-value of 1.9e-12. PF00534B 298-333","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon Feb 12 16:30:51 MST 2001","Mon Feb 12 16:30:51 MST 2001","Mon Feb 12 16:30:51 MST 2001","Thu Feb 22 15:42:02 MST 2001","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 77-322 are 24% similar to PG1469, a probable hexosyltransferase. Similarities are also seen with PG1180.","Mon Jun 4 10:27:40 MDT 2001","Thu Feb 22 15:42:02 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 206 to 383 (E-value = 2.9e-24) place PG1023 in the Glycos_transf_1 family which is described as Glycosyl transferases group 1 (PF00534)","Wed May 2 12:04:38 MDT 2001","34540870","","","Coyne,M.J., Kalka-Moll,W., Tzianabos,A.O., Kasper,D.L. and Comstock,L.E. 2000. Bacteroides fragilis NCTC9343 Produces at Least Three Distinct Capsular Polysaccharides: Cloning, Characterization, and Reassignment of Polysaccharide B and C Biosynthesis Loci. Infect. Immun. 68 (11): 6176-6181. Pubmed: 11035722.","","Thu Feb 22 15:47:37 MST 2001","1","","","PG1141" "PG1024","1224643","1224335","309","ATGATCGTGCATTCTCCCTTGGTCAGCGTGCTTATTCCTCCATACAACGTGGAGAAATCAGAAATCGAGTCTGATTTTGAAATAGCCTACTTGAATGTAGCTAAAATGTTTTATGACAAAGCTCCCTGCAATCAATATAAGACGATAAGGGAATACAGGCCACTGAATCCGAAGAGAATCGCCTCCATGCAATACCATTCGTTAATCCGATTTAGGTTTGCTTGTCAATTGTCAGACTCTTCTGTTCTGAGATATTTAGGATATTTTCTGTGTAAAACAGAACAGAAGATAAAAAGAATGATGAGAGCC","10.20","7.32","12217","MIVHSPLVSVLIPPYNVEKSEIESDFEIAYLNVAKMFYDKAPCNQYKTIREYRPLNPKRIASMQYHSLIRFRFACQLSDSSVLRYLGYFLCKTEQKIKRMMRA","1224643 1224335","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No hits in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-2]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon Feb 12 16:33:59 MST 2001","Mon Feb 12 16:33:59 MST 2001","Mon Feb 12 16:33:59 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG1025","1225572","1224667","906","ATGGGACGGGATTATAAAATTTACGAATATGCCTATCAATTTCCGGATAGTAAAACAGCCCACAATTTCGAGTTGATATGGCAATGGATCAATAAAGCCTTTCATTCTTTGAACTTGGATTTTCATACATGGCTTATATTGGTATCCTTTGTGACCATTCTCCTGATGTTCATCGGGATGAGAAAGATGTCCAAAGATTGCATCTTTTCTATCATCGCTTTCTTCCTCATATACAGAGGATATTTCGAAACGATGAATTCCATGCGACAATATGTGGCCATGGGCATCATATTTGCGTCATTCCCATTGTTTTTGTCTAAAAAATATTTGTATTTTTATATCTGTATCGCTTTCTCCGCACTCTTTCATACGAGTGCTTTAGTCATGATGGTACTGTTTCCTCTGTCTCGAAAGCGAATCAACAATTCCTTGTTAGTGATTGGTTTGGTTGTAACATGGATTTTGGGAGCAGTCATTCTTCAACCTATTGCAGATTTTGCGGTTACTCTACTTCCGGAGAGATATGGTTTTTATATCAGAAAGGAGTTTATACCGGCTGTTTCTTCTTCCGGCTTTTTTCAACTTTTCCTCAATATCTCTGCGCTTGTGTTTTTGGCGATAAGGTCTGACCTTGAAAAAAAGGATTCTCAAATTGATCAATATATTTTCCTCTATGTCTTATCGATTCTGATATATAACACAACTATTTCTTTTGAAGTGGGTATCAGGCTTATGTTCTATCCTTTTATGTTCATATTCATATTGATCCCTAATGCTTATGTATTGTCAGATAAAATATGGCAAAAAGGTGTGATTTTGGCTATTTTGGTTGTGTTCTCATTCTTTATGCTTAAGGATCTCAGCAGTCCAGCTGAACCATACGCTAACTATAAGTCTATACTCTTC","10.00","7.86","35341","MGRDYKIYEYAYQFPDSKTAHNFELIWQWINKAFHSLNLDFHTWLILVSFVTILLMFIGMRKMSKDCIFSIIAFFLIYRGYFETMNSMRQYVAMGIIFASFPLFLSKKYLYFYICIAFSALFHTSALVMMVLFPLSRKRINNSLLVIGLVVTWILGAVILQPIADFAVTLLPERYGFYIRKEFIPAVSSSGFFQLFLNISALVFLAIRSDLEKKDSQIDQYIFLYVLSILIYNTTISFEVGIRLMFYPFMFIFILIPNAYVLSDKIWQKGVILAILVVFSFFMLKDLSSPAEPYANYKSILF","1225707 1224667","TIGR ID: PG1142","conserved hypothetical protein","Inner membrane, Cytoplasm","One significant hit in gapped BLAST; e.g. residues 1-258 are 23% similar to gb|AAG44715.1|AF267127_12 EpsK of Lactobacillus delbrueckii subsp. bulgaricus.","
InterPro
IPR006741
Family
Accessory gene regulator B
SM00793\"[24-179]Tno description
noIPR
unintegrated
unintegrated
tmhmm\"[37-57]?\"[67-82]?\"[109-129]?\"[144-164]?\"[183-203]?\"[218-238]?\"[244-262]?\"[271-289]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 2-281 are 22% similar to a (PROTEIN POLYMERASE PUTATIVE O-ANTIGEN ORF4.11) protein domain (PD041468) which is seen in Q01418_BBBBB.","","Wed Jun 13 13:35:22 MDT 2001","","Wed Jun 13 13:35:22 MDT 2001","Wed Jun 13 13:35:22 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Jun 13 13:35:22 MDT 2001","Wed Jun 13 13:35:22 MDT 2001","","","Mon Feb 12 16:44:09 MST 2001","Wed Jun 13 13:37:36 MDT 2001","Mon Feb 12 16:44:09 MST 2001","","Tue Jun 19 10:16:41 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 22 15:55:36 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Jun 19 10:16:41 MDT 2001","34540871","","","","","","1","","","PG1142" "PG1026","1227291","1225726","1566","ATGGGGCAGGCTTGTATTGGCAGTCGGCCCATTTCTTTTTTGTGGGAAGTCCGGAAATGTCGCCGGTTTATCGGCTCATATACAATTATACGCAGGGTTATTGTATCTCATGTCCTTTCGGGTAGTAGGCACTATATTCCTGCTACAGGACGGGGAAATAGCCGACTTTCTCTCGATAAGGCTTCTCCTTTTTATCTTACCTTTGTGCCGAAGAACTCAATCAGCTATTACAATATGGATATTGCCGTAGTCGGTATCGGCTATGTGGGACTGGTCAGTGCTACTTGCTTTGCGGAGTTGGGAGCAAATGTTCGCTGCATAGATACTGATAGAAATAAAATCGAGCAGCTGAACAGCGGGACTATCCCCATCTATGAGCCGGGGCTTGAAAAAATGATAGCTCGCAATGTGAAAGCCGGCAGACTGCGATTCGGAACGGAGATAGAGCAAGCCGTGCCGGAAGCCGATATTGTATTCATAGCGGTGGGTACACCGGCCGGCGAAGACGGCAGTGCGGATATGGGCTATGTACTCGATGCTGCCCGTAGTATCGGCCGTGCCATGAGCCGTTATATTCTGATCGTTACCAAGAGTACCGTGCCGGTGGGATCGTACCGACTGATCAGGAAGGTTATACAGGAAGAATTGGACAAGCGTGAGGTGCTGATTGACTTCGACATAGCTTCTAATCCGGAGTTTCTGAAAGAAGGAAATGCCATCGATGACTTCATGAAACCCGATAGAGTGGTCGTGGGAGTGGATTCGGACCGGGCGCGCGAACTGATCACAAGCCTTTATAAGCCGATGCTCTTAAACAATTTCCGTGTTCTTTTCATGGACATTGCTTCGGCTGAAATGACCAAATATGCTGCCAATGCCATGCTGGCCACTCGGATCAGCTTTATGAATGATGTGGCCAACTTGTGCGAACGGGTGGGAGCAGATGTTTCGATGGTTCGTCTCGGTATCGGTTCCGATTCACGTATAGGCAGCAAGTTTCTGTACCCGGGTTGCGGATACGGAGGATCTTGTTTTCCCAAGGATGTAAAAGCACTGATCAGAACAGCAGAAGACAACGGCTATCGAATGGAAGTATTGGAAGCCGTTGAACGTGTGAACGAGAAGCAAAAGAGTATTCTGTTCGATAAGTTCTCAACCTATTACAAAGGCAATGTGCAAGGCCGATGTGTAGCGATATGGGGGTTGTCATTCAAACCCGGTACCGATGATATGCGTGAAGCTCCTTCTCTGGTACTCATCGAGAAACTGTTGGAAGTTGGTTGCAGAGTTCGGGTGTACGATCCTGTGGCGATGAAAGAGGCACAAAAAAGATTGGGCGACAAAGTGGAATATACCACGGATATGTACGATGCAGTCCGGGGAGCAGAGGCTCTGTTCCATGTAACGGAATGGAAGGAATTCAGAATGCCTGATTGGTCAGCTCTCTCTCAAACGATGGCTGCATCTTTGGTCATCGACGGTCGTAATGTGTACGAACTTCCGGCGGACAGCGATTTTACCCTGCTTAATATCGGTAATTCCGCTATCGAATCTGCCTCATCCAAA","7.50","1.34","57909","MGQACIGSRPISFLWEVRKCRRFIGSYTIIRRVIVSHVLSGSRHYIPATGRGNSRLSLDKASPFYLTFVPKNSISYYNMDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEADIVFIAVGTPAGEDGSADMGYVLDAARSIGRAMSRYILIVTKSTVPVGSYRLIRKVIQEELDKREVLIDFDIASNPEFLKEGNAIDDFMKPDRVVVGVDSDRARELITSLYKPMLLNNFRVLFMDIASAEMTKYAANAMLATRISFMNDVANLCERVGADVSMVRLGIGSDSRIGSKFLYPGCGYGGSCFPKDVKALIRTAEDNGYRMEVLEAVERVNEKQKSILFDKFSTYYKGNVQGRCVAIWGLSFKPGTDDMREAPSLVLIEKLLEVGCRVRVYDPVAMKEAQKRLGDKVEYTTDMYDAVRGAEALFHVTEWKEFRMPDWSALSQTMAASLVIDGRNVYELPADSDFTLLNIGNSAIESASSK","1227291 1225726","TIGR ID: PG1143","UDP-glucose dehydrogenase","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 79-499 are 63% similar to gb|AAG26472.1|AF285774_12 putative UDP-glucose dehydrogenase of Bacteroides fragilis, residues 79-522 are 52% similar to gb|AAD43344.1|AF159428_1 putative UDP-glucose dehydrogenase of Burkholderia pseudomallei, residues 79-498 are 51% similar to gb|AAG05410.1|AE004628_8 probable nucleotide sugar dehydrogenase of Pseudomonas aeruginosa.This sequence is similar to BT0829.","
InterPro
IPR001732
Domain
UDP-glucose/GDP-mannose dehydrogenase, N-terminal
PF03721\"[79-271]TUDPG_MGDP_dh_N
InterPro
IPR008927
Domain
6-phosphogluconate dehydrogenase, C-terminal-like
SSF48179\"[281-376]T6DGDH_C_like
InterPro
IPR013328
Domain
Dehydrogenase, multihelical
G3DSA:1.10.1040.10\"[289-380]TOpine_DH
InterPro
IPR014026
Domain
UDP-glucose/GDP-mannose dehydrogenase, dimerisation
PF00984\"[281-376]TUDPG_MGDP_dh
InterPro
IPR014027
Domain
UDP-glucose/GDP-mannose dehydrogenase, C-terminal
PF03720\"[398-500]TUDPG_MGDP_dh_C
InterPro
IPR014028
Domain
UDP-glucose/GDP-mannose dehydrogenase, dimerisation and substrate-binding
PTHR11374\"[238-499]TUDPG_MGDP_DH_Creg
InterPro
IPR014360
Family
UDP-glucose/GDP-mannose dehydrogenase
PIRSF000124\"[79-513]TUDPglc_GDPman_dh
InterPro
IPR014685
Family
UDP-glucose 6-dehydrogenase, bacterial
PIRSF500134\"[79-515]TUDPglc_DH_bac
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.1870\"[390-511]TG3DSA:3.40.50.1870
G3DSA:3.40.50.720\"[79-288]TG3DSA:3.40.50.720
PTHR11374:SF3\"[238-499]TPTHR11374:SF3
SSF51735\"[79-287]TSSF51735
SSF52413\"[382-500]TSSF52413


","BeTs to 9 clades of COG1004COG name: Predicted UDP-glucose 6-dehydrogenaseFunctional Class: MThe phylogenetic pattern of COG1004 is AM---qvceBr---------xNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 344-499 are 51% similar to a (DEHYDROGENASE OXIDOREDUCTASE NAD UDP-GLUCOSE) protein domain (PD001281) which is seen in O86295_BBBBB.Residues 231-342 are 58% similar to a (DEHYDROGENASE OXIDOREDUCTASE NAD UDP-GLUCOSE) protein domain (PD001282) which is seen in O86295_BBBBB.Residues 79-209 are 53% similar to a (DEHYDROGENASE OXIDOREDUCTASE NAD UDP-GLUCOSE) protein domain (PD001278) which is seen in Q56812_XANCA.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon Jun 4 10:29:33 MDT 2001","Wed Dec 3 09:27:41 2003","Wed Nov 7 14:50:06 2001","","Mon Feb 12 17:02:31 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 84-479 are 24% similar to PG0094, a UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase. Similarities are also seen to PG1125.","Mon Jun 4 10:29:33 MDT 2001","Thu Feb 22 16:18:47 MST 2001","-52% similar to PDB:2O3J Structure of Caenorhabditis Elegans UDP-Glucose Dehydrogenase (E_value = 2.4E_60);-54% similar to PDB:1MFZ Partially refined 2.8 A Crystal structure of GDP-mannose dehydrogenase from P. aeruginosa (E_value = 2.3E_55);-54% similar to PDB:1MUU 2.0 A crystal structure of GDP-mannose dehydrogenase (E_value = 2.3E_55);-54% similar to PDB:1MV8 1.55 A crystal structure of a ternary complex of GDP-mannose dehydrogenase from Psuedomonas aeruginosa (E_value = 2.3E_55);-47% similar to PDB:1DLI THE FIRST STRUCTURE OF UDP-GLUCOSE DEHYDROGENASE (UDPGDH) REVEALS THE CATALYTIC RESIDUES NECESSARY FOR THE TWO-FOLD OXIDATION (E_value = 8.9E_31);","","","Residues 79 to 271 (E-value = 2.3e-84) place PG1026 in the UDPG_MGDP_dh_N family which is described as UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain (PF03721)Residues 281 to 376 (E-value = 3.8e-51) place PG1026 in the UDPG_MGDP_dh family which is described as UDP-glucose/GDP-mannose dehydrogenase family, central domain (PF00984)Residues 398 to 500 (E-value = 1.8e-33) place PG1026 in the UDPG_MGDP_dh_C family which is described as UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain (PF03720)","Wed Dec 3 09:27:41 2003","34540872","","","Coyne,M.J., Kalka-Moll,W., Tzianabos,A.O., Kasper,D.L. and Comstock,L.E. 2000. Bacteroides fragilis NCTC9343 Produces at Least Three Distinct Capsular Polysaccharides: Cloning, Characterization, and Reassignment of Polysaccharide B and C Biosynthesis Loci. Infect. Immun. 68 (11): 6176-6181. Pubmed: 11035722. ","","Thu Feb 22 16:18:47 MST 2001","1","","","PG1143" "PG1027","1228294","1227338","957","ATGCGCAAGGTGAAAGAGCTGAAGAGCTGGATAGGCTACTACGATGCCATCGACACAGCTGCCGAGGAGGTGAAGCTCGCTTATGAATACTGCAAGGAGGGTATATCCACCGAAGAGGAGGTGGATGAAGCCTATGCTCATGCCATCCGGCTGATAGAAGAGGTGGAGCTGAAGAATATGCTCCGATCCGAAGAGGATCACTTCGGTGCCGTGCTCAAAGTGAATGCCGGTGCAGGAGGAACCGAGAGCCAAGACTGGGCCTCCATGCTGGTGCGTATGTATCAGCGTTGGGCGGACAAGCAGGGGTATCAAGTGACGATAACCAACTGGCAGGATGGAGACGAAGCAGGTATTAAGACTGTGACGATGCAGGTGGAAGGCAATTTGGCCTACGGATTTCTCAAGAGCGAGAATGGGGTACACAGACTCGTTCGCGTCTCTCCCTATAATGCACAAGGTAAACGTATGACATCGTTCGCCTCTGTATTCGTTGTGCCGCTGGTGGACGATTCGATCGAGATCGAGATCAATGCTGCCGGTATCAGCTGGGACACTTTCCGCTCAGGTGGAGCAGGTGGACAGAACGTTAATAAGGTAGAGACGGGAGTCCGACTGCACTACAAGTACAAGGATCCTGAAACGGGAGAGGATAAAGAAATCGTGATCGAGAATACGGAGAGCCGTACCCAGTACGATAACCGCGAAAATGCTATGCGACTGCTCCGCTCACAGCTCTATGAGATGGAGCTACAGCGCCGACGAGCTGCAGAGGCCAAAGTGGAGGCCGGCAAGAAAAAGATAGAGTGGGGATCGCAGATTCGGAGCTATGTATTCGATGATCGCCGTGTGAAAGACCATCGTACCAACTATCAGACGAGCAATGTCAATGCCGTTATGGATGGCGACATAGATGAATTTATCAAGGCTTATCTGATGGAATTTGCCGGTGAAGAGGCG","4.90","-12.80","36383","MRKVKELKSWIGYYDAIDTAAEEVKLAYEYCKEGISTEEEVDEAYAHAIRLIEEVELKNMLRSEEDHFGAVLKVNAGAGGTESQDWASMLVRMYQRWADKQGYQVTITNWQDGDEAGIKTVTMQVEGNLAYGFLKSENGVHRLVRVSPYNAQGKRMTSFASVFVVPLVDDSIEIEINAAGISWDTFRSGGAGGQNVNKVETGVRLHYKYKDPETGEDKEIVIENTESRTQYDNRENAMRLLRSQLYEMELQRRRAAEAKVEAGKKKIEWGSQIRSYVFDDRRVKDHRTNYQTSNVNAVMDGDIDEFIKAYLMEFAGEEA","1228294 1227338","TIGR ID: PG1144","peptide chain release factor RF-2","Cytoplasm","Numerous significant hits to peptide chain release factor 2 and translation releasing factor RF-2 in gapped BLAST; e.g. residues 7-311 are 47% similar to gb|AAK05069.1|AE006331_9 peptide chain release factor 2 of Lactococcus lactis subsp. lactis, residues 7-311 are 42% similar to emb|CAB15546.1| peptide chain release factor 2 of Bacillus subtilis, residues 15-313 are 43% similar to pir||H82016 translation releasing factor RF-2 of Neisseria meningitidis (group A strain Z2491).This sequence is similar to BT3552.","
InterPro
IPR000352
Domain
Class I peptide chain release factor
PF00472\"[167-287]TRF-1
PS00745\"[187-203]TRF_PROK_I
InterPro
IPR004374
Family
Peptide chain release factor 2
PTHR11075:SF6\"[1-318]TPEPTIDE CHAIN RELEASE FACTOR 2
InterPro
IPR005139
Domain
PCRF
PF03462\"[29-137]TPCRF
InterPro
IPR012086
Family
Protein chain release factor, RF-1/RF-2
PIRSF003056\"[4-318]TProtein chain release factor, RF-1/RF-2
noIPR
unintegrated
unintegrated
PTHR11075\"[1-318]TPEPTIDE CHAIN RELEASE FACTOR


","BeTs to 11 clades of COG1186COG name: Protein chain release factor BFunctional Class: JThe phylogenetic pattern of COG1186 is -----qvcebrhuj--olinxNumber of proteins in this genome belonging to this COG is 2","***** IPB000352 (Class I peptide chain release factor) with a combined E-value of 3.8e-64. IPB000352A 72-107 IPB000352B 117-167 IPB000352C 180-226 IPB000352D 273-300","Residues 220-311 are 44% similar to a (PEPTIDE CHAIN FACTOR RELEASE) protein domain (PD002191) which is seen in RF2_HAEIN.Residues 109-203 are 57% similar to a (PEPTIDE CHAIN FACTOR RELEASE) protein domain (PD002273) which is seen in RF2_HELPY.Residues 32-107 are 47% similar to a (PROTEIN COILED COIL REPEAT FILAMENT HEPTAD PATTERN CHAIN) protein domain (PD000002) which is seen in RF2_AQUAE.Residues 56-105 are 60% similar to a (PEPTIDE CHAIN FACTOR RELEASE PROTEIN BIOSYNTHESIS RF-1) protein domain (PD088320) which is seen in P74476_SYNY3.","","","","","","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","","","","","Wed Mar 22 15:09:18 MST 2000","Mon Dec 22 11:24:17 2003","Mon Feb 12 17:06:17 MST 2001","Mon Dec 22 11:24:17 2003","Mon Dec 22 11:24:17 2003","yes","Fri Feb 20 15:41:32 MST 1998","Residues 39-312 are 39% similar to PG0063, a peptide chain release factor. ","Mon Feb 12 17:06:17 MST 2001","Tue Feb 13 08:39:29 MST 2001","-61% similar to PDB:1ML5 Structure of the E. coli ribosomal termination complex with release factor 2 (E_value = 2.5E_64);-61% similar to PDB:1GQE POLYPEPTIDE CHAIN RELEASE FACTOR 2 (RF2) FROM ESCHERICHIA COLI (E_value = 3.3E_64);-61% similar to PDB:1MI6 Docking of the modified RF2 X-ray structure into the Low Resolution Cryo-EM map of RF2 E.coli 70S Ribosome (E_value = 3.3E_64);-58% similar to PDB:2B9M 30S ribosomal subunit, tRNAs, mRNA and release factor RF2 from a crystal structure of the whole ribosomal complex. This file contains the 30S ribosomal subunit, tRNAs, mRNA and release factor RF2 from a crystal structure of the whole ribosomal complex\". The entire crystal structure contains one 70S ribosome, tRNAs, mRNA and release factor RF2 and is described in remark 400. (E_value = 5.1E_49);-58% similar to PDB:2IHR RF2 of Thermus thermophilus (E_value = 5.1E_49);","","","Residues 29 to 137 (E-value = 2.2e-29) place PG1027 in the PCRF family which is described as PCRF domain (PF03462)Residues 169 to 287 (E-value = 1e-38) place PG1027 in the RF-1 family which is described as Peptidyl-tRNA hydrolase domain (PF00472)","Mon Dec 22 11:24:17 2003","","","","","","","1","","","PG1144" "PG1028","1230398","1228578","1821","ATGGCGGTCACTATCTATCATCCGGCAGAATTGCCTCAGCGACAGGCTGAAAAATCCCCAAATAAGACTATAATCAAATACTACGATCGCGAAAGCAAACAATGGCGCAATATCAGTTGGAGCAAATTTGCTGCCGGCGTCATGAATGCTGCGAAAGCTTTAGCCGAGATCGGTCTGGAATCGGGGGAACGAATCGGTATCTATTCCCCCAATATGGTACACTGTCTGTATACCGAGTTGGGGGCCTTCGCCATGCGGGGTGTAGTAGTGCCTTTGTATGCCACAAGCTCACCGGAACAGTTACGGTTCATCGTGGAGGATTCATCCATGGAGACATTGTTTGTCGGAGAGCAGTTCCAATACAACAATGCTTATCGGGTACAGAAAGAATATGGTACGCTAAAGCGCATAGTCGTATTCGATGAGCGCGTGGTGCTCAATCCGGAGGATAAGACTTCGAAATACTTTTCCGAATTTGTTCGTTTGGGTGATTCCATGCCGAACGAGACGAAGGTCAAAGTCTCTTCTCGCGAAGCCATTCCTTCCGATCCGGCACTGATCATCTATACATCGGGCACTTCCGGTAGGAGCAAGGGCGTCCTCCTCCTGCACAGCAATCTGATGTATCAGATGAAAGTCCATAGCGAGCATATCCCCGTCTATGGGCCGGGCGAGCTGTCGATAGCTTTCCTGCCGATGAGTCATATTTTCGAAAAGGCATGGACACTCTTTTGCCTGACGACGGGAACGAGGATTGCCATCTTGAGAGATCCGAAGAAAGTATTGGAGGCACTACCTCAGATACGCCCATCGCTCATGTGCAACGTGCCACGCTTTTGGGAGAAAGTGTATCAGGGCGTGAATGAGAAGATGGCCTCCTCTCCCCGCATCCTGAAAGGTGTCTACAGGCGTGCTATGGCCGTAGGCCAACGCTATCGTCTCGACTATTGGAATGAGGGGAAGCGTGCGCCACTGCTTCTGAGTATGCAATATGCCTTTTACAACTGCACTATTTTTACCCTGCTCAAGCGCGTACTGGGACTACAGCGAGGGCGTTATTTCCCCACGGCCGGAGCACCGCTATCGGATGAGATCAACATCTTCCTTCAGTCCGTAAACATTCCCATCATTGTCGGATATGGTCTGTCCGAAACGACTGCCACGGTATCTTTCTATCCGCAGCGAGGATTCAAGATCGGCTCCATGGGCAAAGTGATGCCGGGGCTGGACGCCCGAATAGATCCGGACAATAACGAGATATTGGTCAAGGGCGAGTCCGTCATGTCCGAGTACTATAATCTGCCGGAGGAAACTGCCGGAGCCTTCACGCCTGACGGCTATTTCCGTACGGGCGATGCCGGACGCATGGATCCGGATGGAACGCTTTATTTTCTGGAGAGGATAAAAGACCTGTACAAGACTGCCAACGGAAAGTACATAGCTCCGCAGATGATCGAGGGGATGCTGACCAAGGATCCCATCATCGAACAGATAGCGGTGATAGGTGACAGGTTCAAGTATGTGAGTGCCTTGGTCTATCCGAATTGGGAATTGGTAAGACAGGCTGCCATCAAAAGGGGACTTGAACAGGCCCGGACAATGTCTGTGGACGAGATGGCTGCAAATCCTGAAATCAACCGCCTGATGATGGCCAGAATAGAGGCTGCACAAGATTCGCTTGCTGCTTACGAGAAGGTGAAGTACATTACGCTCCTCGCCGAGCCTTTTACACTGGAGAAGGGCGAACTGACCGAGACGATGAAACTCAAAAGGCGAGTGATCAACGAACACTATGCCGAAGCCATCGAAAAGATGTACCTT","9.40","8.55","68877","MAVTIYHPAELPQRQAEKSPNKTIIKYYDRESKQWRNISWSKFAAGVMNAAKALAEIGLESGERIGIYSPNMVHCLYTELGAFAMRGVVVPLYATSSPEQLRFIVEDSSMETLFVGEQFQYNNAYRVQKEYGTLKRIVVFDERVVLNPEDKTSKYFSEFVRLGDSMPNETKVKVSSREAIPSDPALIIYTSGTSGRSKGVLLLHSNLMYQMKVHSEHIPVYGPGELSIAFLPMSHIFEKAWTLFCLTTGTRIAILRDPKKVLEALPQIRPSLMCNVPRFWEKVYQGVNEKMASSPRILKGVYRRAMAVGQRYRLDYWNEGKRAPLLLSMQYAFYNCTIFTLLKRVLGLQRGRYFPTAGAPLSDEINIFLQSVNIPIIVGYGLSETTATVSFYPQRGFKIGSMGKVMPGLDARIDPDNNEILVKGESVMSEYYNLPEETAGAFTPDGYFRTGDAGRMDPDGTLYFLERIKDLYKTANGKYIAPQMIEGMLTKDPIIEQIAVIGDRFKYVSALVYPNWELVRQAAIKRGLEQARTMSVDEMAANPEINRLMMARIEAAQDSLAAYEKVKYITLLAEPFTLEKGELTETMKLKRRVINEHYAEAIEKMYL","1230401 1228578","TIGR ID: PG1145","probable long-chain fatty-acid-Coenzyme A ligase (long-chain acyl-CoA synthetase)","Cytoplasm, Inner membrane","Numerous significant hits to putative long-chain fatty-acid-Coenzyme A ligase protein in gapped BLAST; e.g. residues 13-606 are 38% similar to gb|AAC21681.1| long chain fatty acid coA ligase, putative of Haemophilus influenzae Rd, residues 30-606 are 35% similar to gb|AAF95626.1| long-chain-fatty-acid--CoA ligase, putative of Vibrio cholerae, residues 17-606 are 30% similar to gb|AAB91031.1| long-chain-fatty-acid--CoA ligase of Archaeoglobus fulgidus.This sequence is similar to BT3550.","
InterPro
IPR000873
Domain
AMP-dependent synthetase and ligase
PR00154\"[182-193]T\"[194-202]TAMPBINDING
PF00501\"[39-500]TAMP-binding
PS00455\"[187-198]?AMP_BINDING
noIPR
unintegrated
unintegrated
G3DSA:2.30.38.10\"[399-465]TG3DSA:2.30.38.10
G3DSA:3.40.50.980\"[6-205]TG3DSA:3.40.50.980
PTHR11968\"[9-314]T\"[352-522]T\"[550-607]TPTHR11968
PTHR11968:SF10\"[9-314]T\"[352-522]T\"[550-607]TPTHR11968:SF10
SSF56801\"[7-606]TSSF56801


","BeTs to 8 clades of COG1022COG name: Long-chain acyl-CoA synthetases (AMP-forming)Functional Class: IThe phylogenetic pattern of COG1022 is a---Yq-c--Rh----Ol---Number of proteins in this genome belonging to this COG is 2","***** IPB000873 (AMP-binding domain) with a combined E-value of 8e-08. IPB000873 183-200","Residues 538-598 are 44% similar to a (LIGASE ACYL-COA SYNTHETASE FATTY) protein domain (PD001740) which is seen in LCFH_HAEIN.Residues 462-523 are 54% similar to a (LIGASE SYNTHETASE ACYL-COA FATTY) protein domain (PD002523) which is seen in LCFH_HAEIN.Residues 13-165 are 28% similar to a (PUTATIVE LONG-CHAIN-FATTY-ACID--COA) protein domain (PD102940) which is seen in LCFH_HAEIN.Residues 88-235 are 30% similar to a (LIGASE SYNTHETASE PROTEIN ENZYME) protein domain (PD000070) which is seen in O69577_MYCLE.Residues 416-457 are 64% similar to a (LIGASE SYNTHETASE PROTEIN ENZYME ANTIBIOTIC BIOSYNTHESIS) protein domain (PD000107) which is seen in LCFH_HAEIN.Residues 236-312 are 42% similar to a (LIGASE ACYL-COA SYNTHETASE FATTY) protein domain (PD003160) which is seen in LCFH_HAEIN.","","Wed Jun 13 13:21:30 MDT 2001","","Wed Jun 13 13:21:30 MDT 2001","Wed Jun 13 13:21:30 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Wed Jun 13 13:21:30 MDT 2001","Wed Jun 13 13:21:30 MDT 2001","","","Thu Feb 22 16:32:05 MST 2001","Mon Dec 22 11:22:48 2003","Tue Feb 13 09:16:45 MST 2001","Tue Jun 19 10:50:07 MDT 2001","Tue Jun 19 10:50:07 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 39-566 are 25% similar to PG1596, a long-chain-fatty-acid-CoA ligase.","Wed Jun 13 13:28:06 MDT 2001","Tue Feb 13 09:16:45 MST 2001","-43% similar to PDB:1BA3 FIREFLY LUCIFERASE IN COMPLEX WITH BROMOFORM (E_value = 3.1E_22);-43% similar to PDB:1LCI FIREFLY LUCIFERASE (E_value = 3.1E_22);-50% similar to PDB:2D1Q Crystal structure of the thermostable Japanese Firefly Luciferase complexed with MgATP (E_value = 4.8E_15);-50% similar to PDB:2D1R Crystal structure of the thermostable Japanese firefly Luciferase complexed with OXYLUCIFERIN and AMP (E_value = 4.8E_15);-50% similar to PDB:2D1S Crystal structure of the thermostable Japanese Firefly Luciferase complexed with High-energy intermediate analogue (E_value = 4.8E_15);","","","Residues 39 to 500 (E-value = 1.1e-75) place PG1028 in the AMP-binding family which is described as AMP-binding enzyme (PF00501)","Tue Jun 19 10:50:07 MDT 2001","34540873","","","","","","1","","","PG1145" "PG1029","1231785","1232909","1125","ATGAATTTCTTAAAAAAAGAACCGTTTAAAATATTCTCTATGATTTATCTGCTGTTAGATACAATAACAAACCGTGCCGGTACAGAACGCGCCGTGATCAACTTGGCTAACAACCTGCATGCCAATGGTCATCGCGTATCATTAGTCAGCGTTTGTACAAAAGAAGGAGAGCCTTCCTTCCAAGTAGAAAAAGGAATAGAAGTACACCATCTCGGAATTAGGCTTTATGGCAATGCATTAGCCCGCAAAACAGTATATTTCAAGGCTTATCGAAGGATAAAAGCCCTATACAAGAAGCGTGAACCGGTTTTATTGATAGGGACTAATATTTTTATCAATACAATTTTGTCTCAGATCAGTAACAGAGGCAGAATATTTACGATCGGATGCGAACATATCTCTTATGATATTGCCCGCCCTATTACAAAACGCATAAGGGGGTTTCTGTATTCAGGGCTTGATGCCGTTGTAGCACTGACAAAAAGAGATCAGCAATCGTTCGAGGCAATCTTACGTGGACGCTCTAAAGCATATGTCATACCCAATCAAGTTTCATTTACTACAGTCCAAAGAGATGCTACTACTCACAAACAAATGTTGGCGATTGGCAGGCTTACCTACCAGAAGGGTTTTGAATTCATGATAGAAGATGCATCACGAGTGCTGCGAGAAAGGCCTGATTGGAAGCTTATCATAGTCGGAGATGGCGAAAATGAATCGATGCTACGTAAAGAAATTGCATCTCGCAATATGGAGTCGCAAATAGAAATACATCCATCTACACCGGAAATTCGCAAATACTACGAATCATCTGCTATTTATCTAATGACGTCCCGTTTCGAAGGACTACCAATGGTACTTCTCGAAGCAGAAGCATATGCACTACCTATAATCTCATACGATTGTCCGACCGGCCCGAGGGAACTGATCGAAAACGGTCGCAATGGTTTCCTTGTGCCAATGGAAGCACATGAAGACTTCGCGGATAAGTTACGCTTATTGATGGATGATGAAACTCTTCGTAAGAAAATGGGACAAGAATCAGAGTTGATGGTCAAATCCTACTCTCCGGCAAATATCTATGAATGTTGGAAGAAACTATTCGTCGAAATCGGCTACATGAAT","9.90","10.76","43097","MNFLKKEPFKIFSMIYLLLDTITNRAGTERAVINLANNLHANGHRVSLVSVCTKEGEPSFQVEKGIEVHHLGIRLYGNALARKTVYFKAYRRIKALYKKREPVLLIGTNIFINTILSQISNRGRIFTIGCEHISYDIARPITKRIRGFLYSGLDAVVALTKRDQQSFEAILRGRSKAYVIPNQVSFTTVQRDATTHKQMLAIGRLTYQKGFEFMIEDASRVLRERPDWKLIIVGDGENESMLRKEIASRNMESQIEIHPSTPEIRKYYESSAIYLMTSRFEGLPMVLLEAEAYALPIISYDCPTGPRELIENGRNGFLVPMEAHEDFADKLRLLMDDETLRKKMGQESELMVKSYSPANIYECWKKLFVEIGYMN","1231755 1232909","TIGR ID: PG1149","transferase protein","Cytoplasm","Numerous significant hits in gapped BLAST; e.g residues 22-371 are 33% similar to pir||S51263 probable galactosyltransferase of Yersinia enterocolitica, residues 15-367 are 31% similar to emb|CAA54885.1| glycosyl transerase of Erwinia amylovora, residues 22-365 are 28% similar to gb|AAC23344.1| lipopolysaccharide biosynthesis protein of Haemophilus influenzae Rd. ","
InterPro
IPR001296
Domain
Glycosyl transferase, group 1
PF00534\"[200-351]TGlycos_transf_1
noIPR
unintegrated
unintegrated
PTHR12526\"[10-371]TPTHR12526
PTHR12526:SF32\"[10-371]TPTHR12526:SF32
SSF53756\"[14-371]TSSF53756


","BeTs to 13 clades of COG0438COG name: Glycosyltransferases IFunctional Class: MThe phylogenetic pattern of COG0438 is AMTKYQVCEBRhUj--o---XNumber of proteins in this genome belonging to this COG is 9","***** PF00534 (Glycosyl transferases group 1) with a combined E-value of 7.1e-10. PF00534B 274-309","Residues 148-255 are 28% similar to a (PROTEIN TRANSFERASE GLYCOSYLTRANSFERASE BIOSYNTHESIS) protein domain (PD000427) which is seen in Q58459_METJA.Residues 268-342 are 61% similar to a (TRANSFERASE PROTEIN GLYCOSYLTRANSFERASE SYNTHASE) protein domain (PD000172) which is seen in Q56916_YEREN.","","Tue Jun 12 17:38:13 MDT 2001","","Tue Jun 12 17:38:13 MDT 2001","Tue Jun 12 17:38:13 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Tue Jun 12 17:38:13 MDT 2001","Tue Jun 12 17:38:13 MDT 2001","","","Thu Feb 22 16:43:55 MST 2001","Tue Jun 12 17:41:24 MDT 2001","Tue Feb 13 09:41:38 MST 2001","Tue Jun 19 11:10:49 MDT 2001","Tue Jun 19 11:10:49 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 13 09:41:38 MST 2001","-46% similar to PDB:1ONK Mistletoe lectin I from viscum album (E_value = );-46% similar to PDB:1PC8 Crystal Structure of a novel form of mistletoe lectin from Himalayan Viscum album L. at 3.8A resolution (E_value = );-46% similar to PDB:1TFM CRYSTAL STRUCTURE OF A RIBOSOME INACTIVATING PROTEIN IN ITS NATURALLY INHIBITED FORM (E_value = );-46% similar to PDB:1YF8 Crystal structure of Himalayan mistletoe RIP reveals the presence of a natural inhibitor and a new functionally active sugar-binding site (E_value = );","","","Residues 187 to 351 (E-value = 6e-40) place PG1029 in the Glycos_transf_1 family which is described as Glycosyl transferases group 1 (PF00534)","Tue Jun 19 11:10:49 MDT 2001","34540875","","","","","","1","","","PG1149" "PG1030","1233049","1233309","261","ATGAGAATGAGACTTAAGGAGATTAAAGAAATCGGAGTAAGCTTTAAGGCTAAGAGAAACCAAATATCAGACGCCTTTCAAGGTATTTATTCGAAGAATTTGGTCAGAGTACTGTACTTGATACCGGAATGTGTACATTCCAACCATCGACATCGTATTTTCCCACATGATGAAGAATTTGCTACCTTTGAAAAGGTAGGCCGAAACGGCATTTTACCGGCTATAGACAAAAAGCATATTCATCATGAACAATTTCAAGTT","10.40","6.62","10305","MRMRLKEIKEIGVSFKAKRNQISDAFQGIYSKNLVRVLYLIPECVHSNHRHRIFPHDEEFATFEKVGRNGILPAIDKKHIHHEQFQV","1233049 1233309","TIGR ID: PG1150","hypothetical protein","Cytoplasm","No hits found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Feb 13 09:46:56 MST 2001","Tue Feb 13 09:46:56 MST 2001","Tue Feb 13 09:46:56 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 13 09:46:56 MST 2001","-46% similar to PDB:1RSG Crystal structure of the polyamine oxidase Fms1 from yeast (E_value = );-46% similar to PDB:1XPQ Crystal structure of fms1, a polyamine oxidase from yeast (E_value = );-46% similar to PDB:1YY5 Crystal structure of Fms1, a polyamine oxidase from Yeast (E_value = );-46% similar to PDB:1Z6L crystal structure of Fms1 in complex with its substrate (E_value = );","","","No significant hits to the Pfam 11.0 database","","34540876","","","","","","1","","","PG1150" "PG1031","1233293","1234438","1146","ATGAACAATTTCAAGTTTAAGAATCCTACCGAACTTATCTTCGGACAAGGGATGATCAAAGAGCTACCCAAACGAGTGCCGGCCGGTGTTCCTGTCTTGGTCACTTTCGGAAGTGGTAGCGTTCGATACAATGGCGTATACCGGGCCGTAAAGGATGCACTTGAGGGCTATGATTTGGTGGAATTTTGGGGTATTGAGTCCAACCCCAAAATAGAAACTCTTCGGAAAGCCATAGCCATGGGCAAAGAACATAATTGTCAGTTCGTTCTCGCCGTCGGTGGCGGTTCGGTAATAGATGGCAGTAAGCTGATCGCAGCAGCCATCCCCTACGAAGGAGATGCATGGGAGCTGGTACTCAAAGGTTACAGCCGAGATACGATACTCCCACTTGGAACGGTGCTGACCATACCGGCTACAGGATCGGAAATGAACAGCGGGGCTATTATCTCGAGAGAAGAGACGAAGGAGAAGCTCGTTTTCCGAGGCAATTTTCCCGTTTTCTCCATCCTCGATCCGGAGGTGACTTTCAGCCTTCCTCCCTATCAGATAGCTTGCGGACTGGCTGACAGCTTCGTCCATGTCATAGAACAGTACATAACGACTCCGGGCCAAAGCCGTCTGATGGATCGATGGGCAGAGAGCATTATGCTTACGCTGAAAGAGATTGCCCCTCTGATCCGTGAGAATCCGCACAGCTACGATCTGATGGCCGACTTTATGCTCTGCGCCACGATGGCACTGAATGGATTTATCGCCATGGGCGTCACACAAGACTGGGCTACACACATGATCGGTCATGAGATAACGGCACTGACCGGACTCACACACGGACACACGCTGGCCATAGTGCTACCGGGTACTCTTCGCACCTTGGGACACGATCACAAGCGGGAGAAGATGCTCCAATATGCCGAACGAATCTGGGATATAAAAGAGGGAACAGAGGAGGAGCGTATAGATGCAGCTATTGCTCGGACGGAGGAATTCTTCCGCGAACTCGGACTGAAGACCCGTCTGGAAGAAATGCACATAGGATCGGATGTGATAAAGGAAATAGAGCGTCGATTCATCGAACGAGGGGTCAGCTATGGCGAAGCATTGGATGTCGACGGGCCTATGGCTCGCCGCATACTCGAAGCATGCCGA","5.60","-8.74","42562","MNNFKFKNPTELIFGQGMIKELPKRVPAGVPVLVTFGSGSVRYNGVYRAVKDALEGYDLVEFWGIESNPKIETLRKAIAMGKEHNCQFVLAVGGGSVIDGSKLIAAAIPYEGDAWELVLKGYSRDTILPLGTVLTIPATGSEMNSGAIISREETKEKLVFRGNFPVFSILDPEVTFSLPPYQIACGLADSFVHVIEQYITTPGQSRLMDRWAESIMLTLKEIAPLIRENPHSYDLMADFMLCATMALNGFIAMGVTQDWATHMIGHEITALTGLTHGHTLAIVLPGTLRTLGHDHKREKMLQYAERIWDIKEGTEEERIDAAIARTEEFFRELGLKTRLEEMHIGSDVIKEIERRFIERGVSYGEALDVDGPMARRILEACR","1233293 1234438","TIGR ID: PG1151","conserved hypothetical protein (probable alcohol dehydrogenase)","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 1-382 are 46% similar to gb|AAC76047.1| putative oxidoreductase of Escherichia coli K12, residues 1-382 are 46% similar to gb|AAG58147.1|AE005530_13 putative oxidoreductase of Escherichia coli O157:H7, residues 1-380 are 43% similar to gb|AAD19418.1| NADH-dependent butanol dehydrogenase.This sequence is similar to BT0535. ","
InterPro
IPR001670
Domain
Iron-containing alcohol dehydrogenase
PF00465\"[9-361]TFe-ADH
PS00060\"[259-279]?ADH_IRON_2
noIPR
unintegrated
unintegrated
G3DSA:1.20.1090.10\"[180-381]TG3DSA:1.20.1090.10
G3DSA:3.40.50.1970\"[1-179]TG3DSA:3.40.50.1970
PIRSF000113\"[1-369]TADH4
PTHR11496\"[144-380]TPTHR11496
SSF56796\"[1-382]TSSF56796


","BeTs to 3 clades of COG1979COG name: Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenasefamilyFunctional Class: CThe phylogenetic pattern of COG1979 is ------v-eB-----------Number of proteins in this genome belonging to this COG is 1","***** IPB001670 (Iron-containing alcohol dehydrogenase) with a combined E-value of 3.8e-28. IPB001670A 15-25 IPB001670B 89-104 IPB001670C 135-144 IPB001670D 165-198 IPB001670E 262-277","Residues 10-246 are 47% similar to a (DEHYDROGENASE OXIDOREDUCTASE NAD ALCOHOL IRON REDUCTASE) protein domain (PD001480) which is seen in YQHD_ECOLI.Residues 258-380 are 42% similar to a (NADH-DEPENDENT BUTANOL DEHYDROGENASE OXIDOREDUCTASE NAD) protein domain (PD094796) which is seen in YQHD_ECOLI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Dec 2 16:44:41 2003","Tue Dec 2 16:44:16 2003","Tue Feb 13 09:58:13 MST 2001","Mon Jun 4 10:36:06 MDT 2001","Tue Feb 13 09:58:13 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 66-277 are 26% similar to PG0622, an iron-containing alcohol dehydrogenase.","Mon Jun 4 10:36:06 MDT 2001","Tue Feb 13 09:58:13 MST 2001","-63% similar to PDB:1OJ7 STRUCTURAL GENOMICS, UNKNOWN FUNCTION CRYSTAL STRUCTURE OF E. COLI K-12 YQHD (E_value = 1.4E_91);-53% similar to PDB:1VLJ Crystal structure of NADH-dependent butanol dehydrogenase A (TM0820) from Thermotoga maritima at 1.78 A resolution (E_value = 2.4E_51);-50% similar to PDB:1VHD Crystal structure of an iron containing alcohol dehydrogenase (E_value = 2.6E_13);-50% similar to PDB:1O2D Crystal structure of Alcohol dehydrogenase, iron-containing (TM0920) from Thermotoga maritima at 1.30 A resolution (E_value = 5.7E_13);","","","Residues 9 to 361 (E-value = 1.1e-22) place PG1031 in the Fe-ADH family which is described as Iron-containing alcohol dehydrogenase (PF00465)","Mon Jun 4 10:36:06 MDT 2001","34540877","","","","","","1","","","PG1151" "PG1031.1","1234959","1234648","312","TTGGCGTGCGGGCAATTTCCTGCTTCAGCTTTGCCTTTGCCTTCGCAAGATTTGTGGCCGTGCTTGCTCTTGCACTCGCCTTTTTCTGACTTGTGGCAGTCACTTTTTTTGCAGTCTTTGGATTTGTCCTTGCTACAATCTTTTGCGTTGGCATCCTTGGCCTTATCCTTACAGCAGTCTTTGGCATCTTTAGCCTTGTCTTTGCAACTCTCGCCAGCTTTCTTGGCATCACAAGCTTTGTCGTGGTGGTGGGTGCACTCTTGTTTCTTTACCGTTTGTTCTGTCTTAGCAGTTTCTACTTTCTTTTACGTT","","","11392","LACGQFPASALPLPSQDLWPCLLLHSPFSDLWQSLFLQSLDLSLLQSFALASLALSLQQSLASLALSLQLSPAFLASQALSWWWVHSCFFTVCSVLAVSTFFYV","","NO TIGR ID corresponds to this gene.","hypothetical protein","Periplasm","No hits in gapped BLAST.","
noIPR
unintegrated
unintegrated
tmhmm\"[31-51]?\"[57-77]?\"[82-102]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Tue Feb 13 10:03:17 MST 2001","Tue Feb 13 10:03:17 MST 2001","Tue Feb 13 10:03:17 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG1031.2","1234728","1235033","306","GTGATGCCAAGAAAGCTGGCGAGAGTTGCAAAGACAAGGCTAAAGATGCCAAAGACTGCTGTAAGGATAAGGCCAAGGATGCCAACGCAAAAGATTGTAGCAAGGACAAATCCAAAGACTGCAAAAAAAGTGACTGCCACAAGTCAGAAAAAGGCGAGTGCAAGAGCAAGCACGGCCACAAATCTTGCGAAGGCAAAGGCAAAGCTGAAGCAGGAAATTGCCCGCACGCCAAGAAGCACGAAAAGGCAACTGATAAGCAATAAAAAAGAGAGTCAAAAAAGACTCATTAAAATTATTGTTGCTTTT","","","11442","VMPRKLARVAKTRLKMPKTAVRIRPRMPTQKIVARTNPKTAKKVTATSQKKASARASTATNLAKAKAKLKQEIARTPRSTKRQLISNKKESQKRLIKIIVAF","","NO TIGR ID corresponds to this gene.","hypothetical protein","Periplasm","No hits in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Tue Feb 13 12:00:05 MST 2001","Tue Feb 13 12:00:05 MST 2001","Tue Feb 13 12:00:05 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG1031.3","1235039","1234770","270","TTGCTAAAAAGCAACAATAATTTTAATGAGTCTTTTTTGACTCTCTTTTTTATTGCTTATCAGTTGCCTTTTCGTGCTTCTTGGCGTGCGGGCAATTTCCTGCTTCAGCTTTGCCTTTGCCTTCGCAAGATTTGTGGCCGTGCTTGCTCTTGCACTCGCCTTTTTCTGACTTGTGGCAGTCACTTTTTTTGCAGTCTTTGGATTTGTCCTTGCTACAATCTTTTGCGTTGGCATCCTTGGCCTTATCCTTACAGCAGTCTTTGGCATCTT","","","10716","LLKSNNNFNESFLTLFFIAYQLPFRASWRAGNFLLQLCLCLRKICGRACSCTRLFLTCGSHFFCSLWICPCYNLLRWHPWPYPYSSLWHL","","TIGR ID: PG1152","hypothetical protein","Cytoplasm, Extracellular","No significant hits in gapped BLAST.","
InterPro
IPR013032
Domain
EGF-like region
PS00022\"[38-49]?EGF_1
noIPR
unintegrated
unintegrated
tmhmm\"[19-39]?\"[54-74]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Tue Feb 13 12:05:09 MST 2001","Tue Feb 13 12:05:09 MST 2001","Tue Feb 13 12:05:09 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540878","","","","","","1","","","PG1152" "PG1032","1235150","1235752","603","ATGACTATCAGCAAGTTGTGCAATAGGATTTTCGGCGAGGCTATTCAGGCCTATAACGTCACCGACAGCGTAGACGCACCGTGCAACAATCCATATCGGCCTCAAACGATCGAGCATTATTTGTTTTTGAAGAATTGGATCGATAATGCCCAGTGGCATCTCGAAGATATTATACGTGATCCCAACATCGATCCGGCTGATGCGCTGGTAATCAAACGCCGTATCGACAAATCCAATCAAGACAGAACCGATCTGGTGGAGTTGATAGACAGCTATTTTCTCGATACATACAAGGATGTGAAGGTACTGCCCGATGCTACGATCAACACCGAAAGTCCGGCATGGGCAATCGATCGCCTCTCGATACTGAAGCTCAAAATCCACAACATGCGCTTGGCTACGGAGCGTCCCGATGCCGACGATGCACACCGTGCCAAATGTCAGGAGAAGCTCCGAGTGCTTATCGAACAGGATGCTGACCTCTGCACGGCTATCGACCAGCTTGTGGATGATATTGCAGCCGGTCGCAAGTACATGAAAGTGTACAAGCAGATGAAAATGTACAACGATCCCACTCTTAATCCGATTCTTTTGGGCAAGAAG","5.70","-3.23","23229","MTISKLCNRIFGEAIQAYNVTDSVDAPCNNPYRPQTIEHYLFLKNWIDNAQWHLEDIIRDPNIDPADALVIKRRIDKSNQDRTDLVELIDSYFLDTYKDVKVLPDATINTESPAWAIDRLSILKLKIHNMRLATERPDADDAHRAKCQEKLRVLIEQDADLCTAIDQLVDDIAAGRKYMKVYKQMKMYNDPTLNPILLGKK","1235150 1235752 [Shadowed by 1326]","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No hits in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Feb 13 10:05:25 MST 2001","Tue Feb 13 10:05:25 MST 2001","Tue Feb 13 10:05:25 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 13 10:05:25 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG1033","1235782","1235072","711","ATGATGAATGCGGGGAACGGTCGCTTTCTACTTCTTGCCCAAAAGAATCGGATTAAGAGTGGGATCGTTGTACATTTTCATCTGCTTGTACACTTTCATGTACTTGCGACCGGCTGCAATATCATCCACAAGCTGGTCGATAGCCGTGCAGAGGTCAGCATCCTGTTCGATAAGCACTCGGAGCTTCTCCTGACATTTGGCACGGTGTGCATCGTCGGCATCGGGACGCTCCGTAGCCAAGCGCATGTTGTGGATTTTGAGCTTCAGTATCGAGAGGCGATCGATTGCCCATGCCGGACTTTCGGTGTTGATCGTAGCATCGGGCAGTACCTTCACATCCTTGTATGTATCGAGAAAATAGCTGTCTATCAACTCCACCAGATCGGTTCTGTCTTGATTGGATTTGTCGATACGGCGTTTGATTACCAGCGCATCAGCCGGATCGATGTTGGGATCACGTATAATATCTTCGAGATGCCACTGGGCATTATCGATCCAATTCTTCAAAAACAAATAATGCTCGATCGTTTGAGGCCGATATGGATTGTTGCACGGTGCGTCTACGCTGTCGGTGACGTTATAGGCCTGAATAGCCTCGCCGAAAATCCTATTGCACAACTTGCTGATAGTCATAATTATTATTGCCGCTTAATTTGTCAAAATTATAATGCTATGCGGACAAAGATATATAAAAAACCGATTGGCGAACTC","8.10","5.02","26827","MMNAGNGRFLLLAQKNRIKSGIVVHFHLLVHFHVLATGCNIIHKLVDSRAEVSILFDKHSELLLTFGTVCIVGIGTLRSQAHVVDFELQYREAIDCPCRTFGVDRSIGQYLHILVCIEKIAVYQLHQIGSVLIGFVDTAFDYQRISRIDVGITYNIFEMPLGIIDPILQKQIMLDRLRPIWIVARCVYAVGDVIGLNSLAENPIAQLADSHNYYCRLICQNYNAMRTKIYKKPIGEL","1235782 1235072 [Delay by 147 1327 91 0]","TIGR ID: PG1153","hypothetical protein","Inner membrane, Cytoplasm","No hits in gapped BLAST. ","
noIPR
unintegrated
unintegrated
tmhmm\"[21-41]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Feb 13 10:12:33 MST 2001","Tue Feb 13 10:12:33 MST 2001","Tue Feb 13 10:12:33 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 13 10:12:33 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540879","","","","","","1","","","PG1153" "PG1034","1236004","1236891","888","ATGGGGATCGACATCAAGCACGAAGAGTCTTCCTTGGTCGGTCTTCTTACCTATATCGGACGACTCAAGGATGAGCAGTTCGACTATGTCATCGACCTACACAATGTAATACGTTCCAAAATCATTCGCTTCTATCTTCGCTTTTTCGGAGTCAAAGGTTTCAGTCTGAAGAAACCGCGACTACAGCTTCGGCAGCTTACGGCCAAGCCACCCAAAAAGCCAACCCGATTGCCTTCCGTAATAGAACGATACGCTCAGGTTTTTCACAAAGCCGGGCTTGAAATACATCCTCCCTACCCCATCCTTCTGAACGACTCCGGACATATCTCTACCGAACTGCCGATAGTGGAGATAGGCTCCGGACACCACCTCATCGGGATAGCACCGTTTGCCGGTCATGAAGCCAAGACATATCCGCCGGAAAAAATGCACGAGGTAGTGCGTACCCTTGCCGAGAGAGACGATGTGCAGATTTTTCTTTTCGGGGGTAAGGGGAAAGAAAAAAACATACTGGAGCAGTGGGCAGACGAATCGCCACGCATCGTATCCGTTGCCGGTCTGCTGTCGCTGCCGGAAGAGCTATCTCTTATTCATGCCTTGCGCTGTATGGTTTCAATGGATAGTGCCAATATGCACTTCGCATCATTGGTAGGTACACGAGTTATCTCCATCTGGTGTGCCACGCATCCGGCAGCAGGATTTCTCGGATATGGTCAGCGCATAGAAGATTGTATCGGAGCAGACTTGGATTGCCGGCCTTGCTCCGTTTTCGGCAATAAACCCTGCTTCCGCAAGGATTATGCATGCCGTACTCAGATTGAACCTCAACTTATCATTAACAAAATAGTTTCCACACTTACTGATTTGAATTCAGATGAAACTGAGAAT","7.50","2.57","33227","MGIDIKHEESSLVGLLTYIGRLKDEQFDYVIDLHNVIRSKIIRFYLRFFGVKGFSLKKPRLQLRQLTAKPPKKPTRLPSVIERYAQVFHKAGLEIHPPYPILLNDSGHISTELPIVEIGSGHHLIGIAPFAGHEAKTYPPEKMHEVVRTLAERDDVQIFLFGGKGKEKNILEQWADESPRIVSVAGLLSLPEELSLIHALRCMVSMDSANMHFASLVGTRVISIWCATHPAAGFLGYGQRIEDCIGADLDCRPCSVFGNKPCFRKDYACRTQIEPQLIINKIVSTLTDLNSDETEN","1235839 1236891","TIGR ID: PG1155","heptosyltransferase protein","Cytoplasm, Periplasm","A few significant hits and numerous weak hits in gapped BLAST; e.g. residues 5-282 are 24% similar to gb|AAF93412.1| ADP-heptose--LPS heptosyltransferase II of Vibrio cholerae, residues 25-269 are 28% similar to gb|AAC07461.1| ADP-heptose:LPS heptosyltransferase of Aquifex aeolicus, residues 19-288 are 25% similar to gb|AAG08397.1|AE004913_12 heptosyltransferase II of Pseudomonas aeruginosa.","
InterPro
IPR002201
Family
Glycosyl transferase, family 9
PF01075\"[123-230]TGlyco_transf_9
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.2000\"[120-286]TG3DSA:3.40.50.2000
SSF53756\"[3-286]TSSF53756


","BeTs to 3 clades of COG0859COG name: ADP-heptose:LPS heptosyltransferaseFunctional Class: MThe phylogenetic pattern of COG0859 is -----Q-cE--HUJ-------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Tue Jun 12 16:48:47 MDT 2001","","Tue Jun 12 16:48:47 MDT 2001","Tue Jun 12 16:48:47 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Tue Jun 12 16:48:47 MDT 2001","Tue Jun 12 16:48:47 MDT 2001","","","Tue Feb 13 10:24:39 MST 2001","Tue Jun 19 12:43:07 MDT 2001","Tue Feb 13 10:24:39 MST 2001","Tue Jun 12 16:48:47 MDT 2001","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 13 10:24:39 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 15 to 268 (E-value = 1.7e-09) place PG1034 in the Glyco_transf_9 family which is described as Glycosyltransferase family 9 (heptosyltransferase) (PF01075)","Tue Jun 19 11:26:57 MDT 2001","34540881","","","","","","1","","","PG1155" "PG1035","1236878","1237327","450","ATGAAACTGAGAATTAATAAGCTGATTAGCGATGCCGGACTCGGCTCCCGCCGCGAAGCAGAGAAATACATCACCGAAGGAAGAGTGAAAATCAATGGTCGAATCGCTCGCTTAACGGATTTGGTCTGCGAAAAAGACATTGTTCTTCTTGATGATATTGACATTCCTATCAAGGATCTCATTCGTGAAGAAATCTCCCTGCGCAAATATGAGGAACGGCTCGCTCCCTCCGCCTCCAATCAAGGCAGACAGGATGAAAAGCGAAAGAATCCGCGTCCTAAACAACACAAAGAGGTTCCGTCGCAACGCAATGCCGGGAAACCTCGTTCCGAAAGCAGGATTCGCAATCGTTGGGAAGAAGGTGATGAGGATGATTTTGACTTCGATACAGGACGCGGTTTTCGGAAAGGAAATAGAAAGAACGACTCATCTGTAAAAAAATTCCGACAC","10.60","9.44","17525","MKLRINKLISDAGLGSRREAEKYITEGRVKINGRIARLTDLVCEKDIVLLDDIDIPIKDLIREEISLRKYEERLAPSASNQGRQDEKRKNPRPKQHKEVPSQRNAGKPRSESRIRNRWEEGDEDDFDFDTGRGFRKGNRKNDSSVKKFRH","1236878 1237327","Gapped BLAST hits only correspond to N terminus (residues 1-45).TIGR ID: PG1156","hypothetical protein","Cytoplasm, Periplasm","One weak hit in gapped BLAST; e.g. residues 1-37 are 62% similar to gb|AAC07410.1| hypothetical protein of Aquifex aeolicus.","
InterPro
IPR002942
Domain
RNA-binding S4
PF01479\"[3-48]TS4
SM00363\"[3-61]TS4
PS50889\"[3-64]TS4
noIPR
unintegrated
unintegrated
PTHR21600\"[7-58]TPTHR21600
PTHR21600:SF2\"[7-58]TPTHR21600:SF2
SSF55174\"[3-60]TSSF55174


","BeTs to 11 clades of COG1187COG name: Predicted pseudouridylate synthase family 1Functional Class: JThe phylogenetic pattern of COG1187 is -----QvCEBrHuj--olinxNumber of proteins in this genome belonging to this COG is 2","***** IPB000748 (Pseudouridine synthase, Rsu family) with a combined E-value of 7.7e-14. IPB000748A 4-29","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Tue Feb 13 10:33:09 MST 2001","Tue Feb 13 10:33:09 MST 2001","Tue Feb 13 10:33:09 MST 2001","Tue Feb 13 10:33:09 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 13 10:33:09 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 3 to 48 (E-value = 9.6e-11) place PG1035 in the S4 family which is described as S4 domain (PF01479)","","34540882","","","","","","1","","","PG1156" "PG1036","1239060","1238053","1008","ATGCAGGGATCTGTTTTAATTCTTCTTCTTTTTTTATTGCCGCTGTTGCTGGGATGGTTGGCAGACTACTTTTTAGGAGATCCTCTTTCTCTTCCGCATCCTATAGTCGGCTTCGGTCGCATGATTGCATTCGGAGAGAAAAGATTGAATAAAGGAAACTACCGCAAGGTGAAAGGCGCCTTCATGTCGGTGTTCTATATCGTTGCCGTTTTTCTTTTGACCCTATTGATCCTCTTGGGACTTGTTTTTGTCTGTGTTTATACCATTTTGCTGGACGATTTTTTCCGGATTGCTGTTGCATTTGCTGTGGCTTCTCTTATTTTGGCTATCGGCATTTTCTTCTGTTTGGCAGGTACTACCCTTATTCGTGAAGTACGTATGGTATTCGAAGCAGTCGATCGTTCGCTTGAAGAAGGGCGCAAACAGGTGACGCGAATCGTAGGGCGCGATACGGCTGCTCTGTCGGCGCAGGAAGTCAGGACGGCAGCTTTGGAGACTTTGTCGGAGAATCTGAGCGATGGAGTTGTAGCCCCTATGTTCTGGTATATGTGGCTGGGATTGCCGGGGATGATGGCCTATAAGATGATCAATACCCTTGATTCGATGATCGGCTATAAGACGGCACGGTATTTTCTTTTCGGGCGGATAGCTGCCAAAATCGACGATGTCGCCAACTATATTCCTGCAAGGCTTACGGCATGGCTGATGATTCTCGTGAGTGGGAAGCTCCACCTGTTCTCTTTTGTTCGTCGTTATGGTCGGCAACATGCAAGTCCTAACTCCGGTTATCCCGAGGCAGCTCTTGCGGGTATATTGAATTGCCGTTTCGGGGGTACACATGATTATTTTGGAGAAAGCATCAGCAAGCCTTATATCGGCCATAACGAACGTGAACTGGCAACGGCAGATATGCAGATTGCTATTCGTATCAATCGGCGCGTAGAACTGGTGATGCTGTTACTGACATTCGTTGTGAGTTGGATTACCTCCTCGCTCTTTCTTTTTGCC","10.10","8.06","37613","MQGSVLILLLFLLPLLLGWLADYFLGDPLSLPHPIVGFGRMIAFGEKRLNKGNYRKVKGAFMSVFYIVAVFLLTLLILLGLVFVCVYTILLDDFFRIAVAFAVASLILAIGIFFCLAGTTLIREVRMVFEAVDRSLEEGRKQVTRIVGRDTAALSAQEVRTAALETLSENLSDGVVAPMFWYMWLGLPGMMAYKMINTLDSMIGYKTARYFLFGRIAAKIDDVANYIPARLTAWLMILVSGKLHLFSFVRRYGRQHASPNSGYPEAALAGILNCRFGGTHDYFGESISKPYIGHNERELATADMQIAIRINRRVELVMLLLTFVVSWITSSLFLFA","1239099 1238053","Roper et al. (2000) assign a role in cobalamin biosynthesis to this protein. See in this regard PG193 (cbiC), PG0192 (cbiET), PG0191 (cbiGF), PG0190 (cbiJD), PG1040 (cbiA), PG1038 (cbiP), PG1037 (cobD), PG0602 (cbiK), PG0631 (cobU), PG0632 (cobT), PG0633 (cobS), PG0434 (hemN/F), PG0438 (cbiL), PG0112 (hemH), PG0193 (cbiH).TIGR ID: PG1159","cobalamin biosynthesis protein","Inner membrane, Cytoplasm","Numerous significant hits to cobalamin biosynthesis protein in gapped BLAST; e.g. residues 12-313 are 35% similar to dbjBAB05307.1 cobalamin biosynthesis of Bacillus halodurans, residues 12-303 are 39% similar to spP21634COBD_PSEDE cobalamin biosynthesis protein cobD of Pseudomonas denitrificans, residues 1-330 are 33% similar to spQ52683COBD_RHOCA cobalamin biosynthesis protein of Rhodobacter capsulatus.","
InterPro
IPR004485
Family
Cobalamin (vitamin B12) biosynthesis CbiB
PF03186\"[12-328]TCobD_Cbib
TIGR00380\"[9-329]TcobD


","BeTs to 6 clades of COG1270COG name: Cobyrinic acid a,c-diamide synthase CobB/CbiAFunctional Class: HThe phylogenetic pattern of COG1270 is amtk---c--r----------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 22-303 are 38% similar to a (PROTEIN COBALAMIN BIOSYNTHESIS) protein domain (PD006983) which is seen in COBD_PSEDE.","","Tue Jun 12 16:39:20 MDT 2001","","Tue Jun 12 16:39:20 MDT 2001","Tue Jun 12 16:39:20 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Tue Jun 12 16:39:20 MDT 2001","Tue Jun 12 16:39:20 MDT 2001","","Tue Jun 19 12:43:39 MDT 2001","Tue Feb 13 10:57:41 MST 2001","Wed Jul 30 13:33:24 2008","Tue Feb 13 10:50:56 MST 2001","","Tue Jun 19 12:43:39 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Jul 30 13:33:24 2008","No significant hits to the PDB database (E-value < E-10).","","","Residues 12 to 328 (E-value = 2.6e-84) place PG1036 in the CobD_Cbib family which is described as CobD/Cbib protein (PF03186)","Tue Jun 19 12:43:39 MDT 2001","34540883","","Roper JM, Raux E, Brindley AA, Schubert HL, Gharbia SE, Shah HN, Warren MJ. The enigma of cobalamin (Vitamin B12) biosynthesis in Porphyromonas gingivalis. Identification and characterization of a functional corrin pathway. J Biol Chem. 2000 Dec 22;275(51):40316-23. PMID: 11007789","Crouzet,J., Cauchois,L., Blanche,F., Debussche,L., Thibaut,D., Rouyez,M.C., Rigault,S., Mayaux,J.F. and Cameron,B. 1990. Nucleotide sequence of a Pseudomonas denitrificans 5.4-kilobase DNA fragment containing five cob genes and identification of structural genes encoding S-adenosyl-L-methionine: uroporphyrinogen III methyltransferase and cobyrinic acid a,c-diamide synthase. J. Bacteriol. 172 (10): 5968-5979. PubMed: 2211520.","Mon Jun 4 13:51:50 MDT 2001","Tue Feb 13 10:57:41 MST 2001","1","","","PG1159" "PG1037","1240081","1239077","1005","ATGATTAAAGGACACGGAGATGACCTCTACCGTCACGGCCCCATTCGGGCAAATTTCAGTTCGAATGTTTATAACGCCACCGAGCGTCAGGGATTGCTGGATCACCTTCACAGGAGATTGGATAGCATCGGTTCCTATCCGGAGCCGGAGCCTTATTCTTTGGAGAAAGGTTTGGCCGATTATCACGGTATAGCTGCCGATTCAATCAGTGTGACCAGCGGTGCCACCGAAGCTATTTATCTCATAGCGCAGGCTTTCCGTGGATCTTCTTCAGCCGTAGTAGTTCCCACTTTCAGCGAATATGCCGATGCTTGCCGGCTGCATGGCCATCGTGTGGATTTTATTTCCAAGCCCGAAGAGGCTTCTTCTCGATATGATATGGTCTGGCTCTGTAATCCGAACAATCCGACGGGACGTGTTTGGAAGACAAGCGAGTTGTATCGTATCGTTCGGGAGTGTCCGTCCACGATTTTTATTGTGGATCAGTCTTACGAGTACTTTTCTATAGCCGAAGTCCTCGATACGAAAGAGGCGGTTTCTCTCCCCAATCTTTTGCTGCTGCATTCGCTTACCAAGCGTTTTGCAATACCGGGCTTACGCCTCGGATACCTGACAGCACACGCTTCTCTGACCGAAAGGATCAGAGTTTGCCGCATGCCATGGTCGGTGAATGCTCTTGCCATTGCTGCCGGTGAGTATCTGGTGCAACAGGGATTTCCCACTTCTATACCTTTGGCCGAACTACGTGTGGAAACCGAACGGCTACGCACGGCTATCGGCTCAATGGCCGGTTATGAGGTGGAGCCGACTGATACCCATTTCATGCTGGTTCGCTGCCGTCATCATTCAGCCGCCGATCTGAAAGCTGTTTTGGCCGATCAATACGGTCTGCTGATTCGGGATGCCTCCAACTTTGAGGGCTTGGATACCCATTGCATTCGTATAGCTACACAGACACGTGAGCAGAACGATTGGCTGATCGATGCACTTCGATCGATTTCTTTC","6.40","-4.14","37505","MIKGHGDDLYRHGPIRANFSSNVYNATERQGLLDHLHRRLDSIGSYPEPEPYSLEKGLADYHGIAADSISVTSGATEAIYLIAQAFRGSSSAVVVPTFSEYADACRLHGHRVDFISKPEEASSRYDMVWLCNPNNPTGRVWKTSELYRIVRECPSTIFIVDQSYEYFSIAEVLDTKEAVSLPNLLLLHSLTKRFAIPGLRLGYLTAHASLTERIRVCRMPWSVNALAIAAGEYLVQQGFPTSIPLAELRVETERLRTAIGSMAGYEVEPTDTHFMLVRCRHHSAADLKAVLADQYGLLIRDASNFEGLDTHCIRIATQTREQNDWLIDALRSISF","1240081 1239077","Roper et al. (2000) assign a role in cobalamin biosynthesis to this protein, hence the gene is denoted cbiD. See in this regard PG193 (cbiC), PG0192 (cbiET), PG0191 (cbiGF), PG0190 (cbiJD), PG1040 (cbiA), PG1038 (cbiP), PG0602 (cobK), PG1036 (cobD/cbiB), PG0631 (cobU), PG0632 (cobT), PG0633 (cobS), PG0434 (hemN/F), PG0438 (cbiL), PG0112 (hemH), PG0193 (cbiH).TIGR ID: PG1160","aminotransferase","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 18-331 are 29% similar to dbj|BAB05308.1| aminotransferase of Bacillus halodurans, residues 18-333 are 31% similar to gb|AAC79515.1| CobD of Salmonella typhimurium, residues 18-333 are 27% similar to gb|AAB89229.1| histidinol-phosphate aminotransferase (hisC-2) of Archaeoglobus fulgidus.","
InterPro
IPR004838
Binding_site
Aminotransferases class-I pyridoxal-phosphate-binding site
PS00105\"[189-202]TAA_TRANSFER_CLASS_1
InterPro
IPR004839
Domain
Aminotransferase, class I and II
PF00155\"[46-224]TAminotran_1_2
InterPro
IPR015421
Domain
Pyridoxal phosphate-dependent transferase, major region, subdomain 1
G3DSA:3.40.640.10\"[28-237]TPyrdxlP-dep_Trfase_major_sub1
InterPro
IPR015422
Domain
Pyridoxal phosphate-dependent transferase, major region, subdomain 2
G3DSA:3.90.1150.10\"[245-335]TPyrdxlP-dep_Trfase_major_sub2
InterPro
IPR015424
Domain
Pyridoxal phosphate-dependent transferase, major region
SSF53383\"[9-333]TPyrdxlP-dep_Trfase_major
noIPR
unintegrated
unintegrated
PTHR11751\"[31-334]TPTHR11751
PTHR11751:SF3\"[31-334]TPTHR11751:SF3


","BeTs to 11 clades of COG0079COG name: Histidinol-phosphate aminotransferaseFunctional Class: EThe phylogenetic pattern of COG0079 is AmtkyqvCebRH---------Number of proteins in this genome belonging to this COG is 2","***** IPB001511 (Aminotransferases class-I) with a combined E-value of 5.8e-07. IPB001511B 128-142 IPB001511C 189-202","Residues 36-230 are 26% similar to a (PYRIDOXAL PHOSPHATE AMINOTRANSFERASE TRANSFERASE PROTEIN) protein domain (PD000087) which is seen in HIS8_BACSU.Residues 223-333 are 34% similar to a (AMINOTRANSFERASE HEMOLYSIN ERYTHROCYTE LYSIS PROTEIN) protein domain (PD163722) which is seen in P97084_SALTY.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Mon Jun 4 13:49:44 MDT 2001","Thu Feb 22 17:00:16 MST 2001","Tue Feb 13 11:31:06 MST 2001","Tue Feb 13 11:03:19 MST 2001","Thu Feb 22 17:00:16 MST 2001","Tue Feb 13 11:03:19 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1-332 are 39% similar to PG0011, a predicted histidinol-phosphate aminotransferase.","Tue Feb 13 11:33:51 MST 2001","Tue Feb 13 11:03:19 MST 2001","-47% similar to PDB:1LC5 Crystal Structure of L-Threonine-O-3-phosphate Decarboxylase from S. enterica in its apo state (E_value = 6.7E_31);-47% similar to PDB:1LC7 Crystal Structure of L-Threonine-O-3-phosphate Decarboxylase from S. enterica complexed with a substrate (E_value = 6.7E_31);-47% similar to PDB:1LC8 Crystal Structure of L-Threonine-O-3-phosphate Decarboxylase from S. enterica complexed with its reaction intermediate (E_value = 6.7E_31);-47% similar to PDB:1LKC Crystal Structure of L-Threonine-O-3-Phosphate Decarboxylase from Salmonella enterica (E_value = 6.7E_31);-48% similar to PDB:1FG3 CRYSTAL STRUCTURE OF L-HISTIDINOL PHOSPHATE AMINOTRANSFERASE COMPLEXED WITH L-HISTIDINOL (E_value = 1.8E_15);","","","Residues 60 to 334 (E-value = 3.2e-06) place PG1037 in the Aminotran_1_2 family which is described as Aminotransferase class I and II (PF00155)","Mon Jun 4 13:49:44 MDT 2001","34540884","","Roper JM, Raux E, Brindley AA, Schubert HL, Gharbia SE, Shah HN, Warren MJ. The enigma of cobalamin (Vitamin B12) biosynthesis in Porphyromonas gingivalis. Identification and characterization of a functional corrin pathway. J Biol Chem. 2000 Dec 22;275(51):40316-23. PMID: 11007789","","Mon Jun 4 13:49:44 MDT 2001","","1","","","PG1160" "PG1038","1241432","1240077","1356","ATGGCTTTGAATTCGTTCGTCACGCCCGAAGGTTTGGAGATCGGACGAGCGCAGGCTGTGCAGGCCGAAGCTGCCGGCATCCCATGTCATACGGATATGAATCCCGTGCTGCTCAAGCCGAGTTCGGATCATACTTCACAGGTCGTGCTCAATGGCCGTCCGATAGGCAATCGGGATGCTTACGAATACTTTCGACGAGAGGGGAGGGACGAACTGCGTACGGAGGTGTACGCCGCTTTCGACCGCTTGGCTTCTCGTTTCGGCCCCGTTGTAATGGAAGGAGCGGGCAGTATATCCGAATTGAATCTGCGCGATACCGATATAGTCAATATGCCGATGGCCATCCATGCAGGTGCATGCGTGATCCTTGTGGCCGACATCGACCGTGGAGGCGTGTTTGCTTCGGTCTACGGTTCTATCATGTTGCTCTCTGCCGAAGAGCGAAAGTATGTACGAGGCATCATGATCAATAAGTTTCGGGGCGATCTTCGCCTTTTCGACGAAGGGAAAAAGATCCTTGAGGAATTGTGCGGTATTCCCGTTGTGGGAGTAATTCCTTACTATAAGGATATTCATATCGAGGAGGAAGACTCCGTAGCACTGTCGGTCAAGCAGTATGCTGCCGGACAGGGACGGGTGAATGTGGCTGTAGTCCTGCTGCGATACTTATCGAACTATACGGACTTCAACGTTTTGGAACGCGATCCTCGCGTACACCTTTATTATACGAACAATACGGAAGAGTTGCGCAAGGCCGATATTATCATTCTACCCGGCAGCAAGAGTACCTTGGCCGATCTCTATGAATTGCGGCGCAATGGTGCGGCACAAGCTATCGTACAGGCACATCGCGACGGGACAACGGTATTGGGGATATGTGGCGGATTCCAACTCATGGGCATGGAGGTTTGCGATCCCGACCATATAGAGGGCGATATAGAACGCCTGCCCGGTCTCGGTCTGCTGCCTGTAACGACTGTGATGACAGGCGAGAAGGTTACACGTCGCACGGCATTTCGCTTTCTGGATCATACGGATGAATGCGAGGGATATGAGATTCATATGGGGCGGACGATGCCTGTCGAAGGTGCAGCATCTTCTCCACTGAATCGACTCTCGGATGGAACAGAGGATGGATATTTCGTGGATGCTACTTGTATGGGTACTTATGTGCATGGTATCCTGGACAATCCGGCCGTAATAGACTATCTGCTTTCACCGTATGCAGACAAAATGGAAGAGCGGAAAAGCTTCGACTATGTCCGCTATAAGGATGAGCAATACGATAAATTGGCCGACCATCTGAGACGATATGCCGATGTCCCGCTGATTTACCAACTGATGAAAGACGATGAT","4.80","-19.63","50416","MALNSFVTPEGLEIGRAQAVQAEAAGIPCHTDMNPVLLKPSSDHTSQVVLNGRPIGNRDAYEYFRREGRDELRTEVYAAFDRLASRFGPVVMEGAGSISELNLRDTDIVNMPMAIHAGACVILVADIDRGGVFASVYGSIMLLSAEERKYVRGIMINKFRGDLRLFDEGKKILEELCGIPVVGVIPYYKDIHIEEEDSVALSVKQYAAGQGRVNVAVVLLRYLSNYTDFNVLERDPRVHLYYTNNTEELRKADIIILPGSKSTLADLYELRRNGAAQAIVQAHRDGTTVLGICGGFQLMGMEVCDPDHIEGDIERLPGLGLLPVTTVMTGEKVTRRTAFRFLDHTDECEGYEIHMGRTMPVEGAASSPLNRLSDGTEDGYFVDATCMGTYVHGILDNPAVIDYLLSPYADKMEERKSFDYVRYKDEQYDKLADHLRRYADVPLIYQLMKDDD","1241432 1240077","Roper et al. (2000) assign a role in cobalamin biosynthesis to this protein, hence the gene is denoted cbiP. See in this regard PG193 (cbiC), PG0192 (cbiET), PG0191 (cbiGF), PG0190 (cbiJD), PG1040 (cbiA), PG0602 (cbiK), PG1037 (cobD), PG1036 (cobD/cbiB), PG0631 (cobU), PG0632 (cobT), PG0633 (cobS), PG0434 (hemN/F), PG0438 (cbiL), PG0112 (hemH), PG0193 (cbiH).TIGR ID: PG1161","cobyric acid synthase","Cytoplasm","Numerous significant hits to cobyric acid synthase in gapped BLAST; e.g. residues 1-449 are 42% similar to gb|AAA27268.1| cobyric acid synthase of Salmonella typhimurium, residues 1-445 are 42% similar to gb|AAF96626.1| cobyric acid synthase of Vibrio cholerae, residues 1-440 are 43% similar to gb|AAG04666.1|AE004557_7 cobyric acid synthase of Pseudomonas aeruginosa. ","
InterPro
IPR002586
Domain
Cobyrinic acid a,c-diamide synthase
PF01656\"[1-203]TCbiA
InterPro
IPR004459
Family
Cobyric acid synthase CobQ
TIGR00313\"[1-444]TcobQ: cobyric acid synthase CobQ
InterPro
IPR011698
Domain
CobB/CobQ-like glutamine amidotransferase
PF07685\"[245-400]TGATase_3
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[1-206]Tno description
G3DSA:3.40.50.880\"[216-327]Tno description


","BeTs to 5 clades of COG1492COG name: Cobyric acid synthase CbiP/CobQFunctional Class: HThe phylogenetic pattern of COG1492 is amT----c--r----------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 26-187 are 49% similar to a (PROTEIN ATP-BINDING PLASMID REDUCTASE IRON-SULFUR 4FE-4S) protein domain (PD000159) which is seen in O26880_METTH.Residues 238-399 are 38% similar to a (ACID SYNTHASE PROTEIN COBYRIC) protein domain (PD002914) which is seen in CBIP_SYNY3.Residues 26-232 are 49% similar to a (COBYRIC ACID SYNTHASE COBALAMIN) protein domain (PD006366) which is seen in CBIP_SALTY.","","","","","","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","","","","Mon Jun 4 13:47:19 MDT 2001","Tue Feb 13 12:32:52 MST 2001","Tue Feb 13 12:32:52 MST 2001","Tue Feb 13 11:48:14 MST 2001","","Tue Feb 13 11:48:14 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 13 11:48:14 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 1 to 196 (E-value = 1.5e-38) place PG1038 in the CbiA family which is described as Cobyrinic acid a,c-diamide synthase (PF01656)","Fri Apr 20 13:09:53 MDT 2001","","","Roper JM, Raux E,Brindley AA, Schubert HL, Gharbia SE, Shah HN, Warren MJ. The enigma of cobalamin (Vitamin B12) biosynthesis in Porphyromonas gingivalis. Identification and characterization of a functional corrin pathway. J Biol Chem. 2000 Dec 22;275(51):40316-23. PMID: 11007789","Roth,J.R., Lawrence,J.G., Rubenfield,M., Kieffer-Higgins,S. and Church,G.M. 1993. Characterization of the cobalamin (vitamin B12) biosynthetic genes of Salmonella typhimurium. J. Bacteriol. 175 (11): 3303-3316. PubMed: 8501034.","Mon Jun 4 13:47:19 MDT 2001","Tue Feb 13 12:32:52 MST 2001","1","","","PG1161" "PG1039","1242132","1241569","564","ATGATATATACGAAGACAGGAGACAAAGGAACCACCGGCATATTCGGTGGGGAGCGTGTGCCGAAAGATGATGTACGAGTGGAAGCCTACGGCACGATGGATGAGCTGAATGCTGCCATCGGCATGATCCGGACATTCCTGCCGGAGGAGGATGAGCGTCAGACCGTGCTGTACGATATTCAGATGCGGATGATGGCAGCGATGAGTATAGTGGCCACTCCTGCCGGCAAGCGTGAGCAGAATCCCAATCATTTCCCCGAAGAAGCAGCAGCCAACTGCGAGGCTTTTATCGACAGGCTTTTGGCCGAAACAACCGACAACGGCTACTTCATTCTTCCGGGCGGTACGCCGCTTTCTGCTCATTTGCAGTTGGCTCGTACGATAGCACGCCGAGTGGAAAGAAGGTTGTGGACACTGCACCGATCCGATGAAGTTCCGGATGCAATCTTGAAGTGGATGAATCGCCTGTCCGATCTTTTCTTCGTGATGGCTCGGCACGAAATGCAGCAGCAGGGTTGGAGCGAGGAGAAGTGGCATAGATTCGCCTATAAGAGAAAGAAGAAA","7.70","1.16","21692","MIYTKTGDKGTTGIFGGERVPKDDVRVEAYGTMDELNAAIGMIRTFLPEEDERQTVLYDIQMRMMAAMSIVATPAGKREQNPNHFPEEAAANCEAFIDRLLAETTDNGYFILPGGTPLSAHLQLARTIARRVERRLWTLHRSDEVPDAILKWMNRLSDLFFVMARHEMQQQGWSEEKWHRFAYKRKKK","1242132 1241569","TIGR ID: PG1162","conserved hypothetical protein/subtended by cbi elements","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 2-182 are 39% similar to pir||D70046 conserved hypothetical protein of Bacillus subtilis, residues 2-167 are 40% similar to gb|AAA74262.1| unknown of Klebsiella pneumoniae, residues 2-169 are 36% similar to gb|AAC45649.1| unknown of Clostridium pasteurianum.","
InterPro
IPR002779
Domain
Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase
PD007457\"[110-172]TDUF80
PF01923\"[2-169]TCob_adeno_trans
TIGR00636\"[3-179]TPduO_Nterm
InterPro
IPR012228
Family
Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, PduO-type
PIRSF015651\"[2-184]TATR_monof_PduO
noIPR
unintegrated
unintegrated
G3DSA:1.20.1200.10\"[22-188]TG3DSA:1.20.1200.10
PTHR12213\"[2-180]TPTHR12213
SSF89028\"[2-180]TSSF89028


","BeTs to 4 clades of COG2096COG name: Uncharacterized ACRFunctional Class: SThe phylogenetic pattern of COG2096 is a--k-----br----------Number of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","Residues 8-161 are 39% similar to a (PROTEIN CONSERVED DHAR-DHAT INTERGENIC) protein domain (PD007457) which is seen in O34899_BACSU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon Jun 4 13:43:33 MDT 2001","Tue Feb 13 12:49:04 MST 2001","Tue Feb 13 12:49:04 MST 2001","","Tue Feb 13 12:49:04 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1-180 are 40% similar to PG1005, a predicted conserved hypothetical protein.","Tue Feb 13 12:49:04 MST 2001","Tue Feb 13 12:49:04 MST 2001","-58% similar to PDB:1RTY Crystal Structure of Bacillus subtilis YvqK, a putative ATP-binding Cobalamin Adenosyltransferase, The North East Structural Genomics Target SR128 (E_value = 1.9E_27);-56% similar to PDB:2AH6 Crystal structure of hypothetical protein (10174212) from BACILLUS HALODURANS at 1.60 A resolution (E_value = 6.8E_25);-54% similar to PDB:2G2D Crystal structure of a putative pduO-type ATP:cobalamin adenosyltransferase from Mycobacterium tuberculosis (E_value = 3.7E_23);-54% similar to PDB:2NT8 ATP bound at the active site of a PduO type ATP:co(I)rrinoid adenosyltransferase from Lactobacillus reuteri (E_value = 4.9E_23);-53% similar to PDB:2IDX Structure of Human ATP:Cobalamin adenosyltransferase bound to ATP. (E_value = 6.4E_23);","","","Residues 2 to 169 (E-value = 2.1e-59) place PG1039 in the Cob_adeno_trans family which is described as Cobalamin adenosyltransferase (PF01923)","Mon Jun 4 13:43:33 MDT 2001","34540885","","","","","","1","","","PG1162" "PG1040","1243474","1242158","1317","TTGTCTGTTCCTATCATACGCTCTCATCTCCTTATCAGTGCTGCTTCATCGGGTGGTGGAAAGACTACTTTCACGCTCGGATTGCTACGATTGCTTCGAAGGCGCGGTCTCAAAGTGCAGCCTTTCAAATGCGGTCCCGACTATATCGATCCTAAGTATCACCGCCTTGCATGCGGAACGGAAACGGTGAATCTGGATGCTTTCATGATGAGTCGGGAGCATATCGCCCGACTCTATGATCGCTACGGCAGTGAAGCCGATGTTTCTATTGTGGAGGGAGTGATGGGCTTCTTCGACGGGTACGACCGTATGACGGGTAGCAGTGCCCTTTTGGCCGAAAATCTGCGCATTCCCGTATTGCTTCTGATCCATGCAGGCAGCACGGCCTATTCCGTGGCTCCGATACTGTATGGCTTCAAACACTTCCGCCCGGGTGTGGCTCCGGTGGGTGTCGTTTTCAATAAGGTTGGCTCCGCTTCGCATTATCGCTATCTGGAGGAAGCAGCTGCGGATGCCGGTGTGGCCAGCCTCGGTTACTTGCCGAAGATGAAAGATTTGGAAATACCGTCGCGGCATTTGGGCTTGTCTGTGGAGGATTTAGTCCGTTATGATTATTTGCCGGACAGGGTGGCAGATGCCATCGAGAAGTATGTGGATGTGGAGAGATTGCTTGGTCTGATGGCCTCCGATGTCGATCCGGTTATCGAAGAAGAGAGCTTTACGGAGTCTTCTTTGCACGGGAGGAAATGCATTGCGGTGGCGGATGACGAAGCATTTAACTTCACCTATCGGGAGAATATTCGTCGGCTCGAAAGCCGGGGAAGGGTTGTTCGATTCAGTCCTTTGCGGGACAATCGTCTGCCCGATGATTGCGATTTCTTGTATCTGCCCGGTGGTTATCCGGAGTTTTACCTGCCGGCATTGAGTGCCAACGAATCCATGAAGCGGTCGGTACGGGACTATATCGAGTCGGGAGGTTATGCTCTGGCCGAGTGTGGAGGTATGATGTACCTTTGCGATACGATACGGGGCATGGACGGACGGGACTATCCCATGTGTGGCGTATTGCCTGAGACGGCTACGATGGAAGGAATGCGCCTGCACCTCGGCTACAGGCGAATGGTATACAAGGGGAAAGAGCTACGAGGACATGAATTCCACTACTCTTCGACTATCGGCTCTACGCCGTCCGTGGCACAGCAGTACAATGTGCGAGGCGAAGCCGTGGAGACTCCGCTATACCGATACAAGAATCTCTTGGCCGGATATACGCATCTCTACTGGGGTGAGCATGACGATCTGTGGATGTGGTTCGAC","6.30","-5.17","49391","LSVPIIRSHLLISAASSGGGKTTFTLGLLRLLRRRGLKVQPFKCGPDYIDPKYHRLACGTETVNLDAFMMSREHIARLYDRYGSEADVSIVEGVMGFFDGYDRMTGSSALLAENLRIPVLLLIHAGSTAYSVAPILYGFKHFRPGVAPVGVVFNKVGSASHYRYLEEAAADAGVASLGYLPKMKDLEIPSRHLGLSVEDLVRYDYLPDRVADAIEKYVDVERLLGLMASDVDPVIEEESFTESSLHGRKCIAVADDEAFNFTYRENIRRLESRGRVVRFSPLRDNRLPDDCDFLYLPGGYPEFYLPALSANESMKRSVRDYIESGGYALAECGGMMYLCDTIRGMDGRDYPMCGVLPETATMEGMRLHLGYRRMVYKGKELRGHEFHYSSTIGSTPSVAQQYNVRGEAVETPLYRYKNLLAGYTHLYWGEHDDLWMWFD","1243474 1242158","Roper et al. (2000) assign a role in cobalamin biosynthesis to this protein, hence the gene is denoted cbiA. See in this regard PG193 (cbiC), PG0192 (cbiET), PG0191 (cbiGF), PG0190 (cbiJD), PG0602 (cbiK), PG1038 (cbiP), PG1037 (cobD), PG1036 (cobD/cbiB), PG0631 (cobU), PG0632 (cobT), PG0633 (cobS), PG0434 (hemN/F), PG0438 (cbiL), PG0112 (hemH), PG0193 (cbiH).TIGR ID: PG1163","cobyrinic acid a,c-diamide synthase","Cytoplasm","Numerous significant hits to cobyrinic acid a,c-diamide synthase protein in gapped BLAST; e.g. residues 10-429 are 37% similar to pir||T44692 cobyrinic acid a,c-diamide synthase of Bacillus megaterium, residues 8-429 are 37% similar to gb|AAF12571.1|AE001826_40 cobyrinic acid a,c-diamide synthase of Deinococcus radiodurans, residues 7-434 are 36% similar to sp|P29946|CBIA_SALTY cobyrinic acid a,c-diamide synthase of Salmonella typhimurium. ","
InterPro
IPR002586
Domain
Cobyrinic acid a,c-diamide synthase
PF01656\"[10-197]TCbiA
InterPro
IPR004484
Family
Cobyrinic acid a,c-diamide synthase CbiA
TIGR00379\"[9-436]TcobB: cobyrinic acid a,c-diamide synthase
InterPro
IPR011698
Domain
CobB/CobQ-like glutamine amidotransferase
PF07685\"[284-433]TGATase_3
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[7-201]Tno description


","BeTs to 5 clades of COG1797COG name: Cobyrinic acid a,c-diamide synthase CobBFunctional Class: HThe phylogenetic pattern of COG1797 is amt----c--r----------Number of proteins in this genome belonging to this COG is 1","***** PF01656 (Cobyrinic acid a,c-diamide synthase) with a combined E-value of 1.3e-13. PF01656A 10-41 PF01656B 150-156","Residues 276-425 are 38% similar to a (ACID SYNTHASE PROTEIN COBYRIC) protein domain (PD002914) which is seen in O87698_BACME.Residues 45-263 are 37% similar to a (COBYRINIC ACID A C-DIAMIDE) protein domain (PD186467) which is seen in O87698_BACME.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Mon Jun 4 13:41:55 MDT 2001","Tue Feb 13 13:23:06 MST 2001","Tue Feb 13 13:23:06 MST 2001","Tue Feb 13 12:54:20 MST 2001","Fri Apr 20 13:10:23 MDT 2001","Tue Feb 13 12:54:20 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 13 12:54:20 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 9 to 238 (E-value = 1.6e-45) place PG1040 in the CbiA family which is described as Cobyrinic acid a,c-diamide synthase (PF01656)","Fri Apr 20 13:10:23 MDT 2001","34540886","","Roper JM, Raux E, Brindley AA, Schubert HL, Gharbia SE, Shah HN, Warren MJ. The enigma of cobalamin (Vitamin B12) biosynthesis in Porphyromonas gingivalis. Identification and characterization of a functional corrin pathway. J Biol Chem. 2000 Dec 22;275(51):40316-23. PMID: 11007789","Raux,E., Lanois,A., Warren,M.J., Rambach,A. and Thermes,C. 1998. Cobalamin (vitamin B12) biosynthesis: identification andcharacterization of a Bacillus megaterium cobI operon. Biochem. J. 335 (Pt 1): 159-166. PubMed: 9742225.","Mon Jun 4 13:41:55 MDT 2001","Tue Feb 13 13:23:06 MST 2001","1","","","PG1163" "PG1041","1247607","1244203","3405","ATGAATACAGTTCCTGCTTCTGAAAACAAAGGTCAATCCCGTACAGTGGAAGACGATCCGCAGTACTTCGGACTTTATCTCAACCTCGCACGAGAGAATTTGATAGAAGTCGAAAGTCATGTTCGCATTAAGTTCGGGAAGAAGAAATTGAATGAAGAGTCGCTCAAGCAATCTCTTCTTTGTGATCACCTGCTCTCCGTCGATCGCTGGACCAAAGTCTATGGCCATAGCAGACGCTATCTGCCTTTCCTCCATTATTTCGATCCGGATAGTCAGATCGAAAAAGACCATGATAGCAAGACCGGTGTGGATCCCGATTCGGCCCAAAGGCTGATCAGAGAGCTTTATTCTTTACTTGATTTCCTGCGCAATGACTTCTCGCACAATCGGCTTGATGGCACTACATTCGAGCATCTCGAAGTCAGCCCTGACATCAGCTCCTTTATTACCGGGACATACTCCTTGGCATGCGGGAGAGCACAATCGCGGTTTGCAGATTTCTTCAAGCCCGACGACTTTGTCCTGGCAAAGAACAGGAAGGAACAATTGATAAGCGTAGCGGACGGAAAAGAATGCCTGACCGTTAGTGGCCTTGCCTTTTTCATTTGCCTCTTCCTCGATAGGGAGCAGGCTTCCGGTATGCTGAGCAGGATTCGCGGATTCAAACGAACCGATGAGAATTGGGCACGAGCCGTGCACGAGACCTTCTGCGATCTCTGCATCCGTCATCCTCACGACAGGCTCGAAAGCAGCAATACGAAAGAAGCTCTCTTGCTCGATATGCTCAACGAACTGAACCGTTGCCCCCGCATCCTTTACGATATGCTCCCCGAAGAGGAGCGGGCGCAGTTCCTCCCTGCGCTGGACGAAAATAGCATGAACAACCTCTCGGAAAACAGCCTGAACGAAGAGAGTCGATTGCTTTGGGACGGCTCTTCGGATTGGGCAGAGGCACTGACCAAGAGGATCCGCCATCAGGATCGCTTCCCCTATCTGATGCTTCGTTTTATCGAGGAGATGGATCTGCTCAAGGGTATACGCTTTCGTGTCGATTTGGGTGAAATCGAGCTGGATTCTTACTCCAAAAAGGTAGGCCGGAATGGTGAGTACGATCGCACGATAACGGATCATGCCTTGGCATTCGGCAAGCTGTCAGACTTCCAGAATGAAGAAGAGGTAAGTAGGATGATCAGTGGAGAGGCGTCTTATCCCGTACGCTTCTCTCTCTTTGCTCCCCGCTATGCCATATACGACAATAAGATAGGCTATTGCCATACATCCGACCCTGTATATCCTAAGAGTAAGACAGGGGAGAAGAGGGCCTTGAGCAATCCTCAGTCGATGGGATTTATCAGTGTGCACAACCTTCGTAAGCTTCTCTTGATGGAGTTGCTGTGTGAGGGGAGCTTCAGCCGTATGCAGAGTGATTTCCTCAGAAAAGCGAATCGGATCCTGGATGAAACGGCAGAGGGAAAACTACAGTTTTCGGCATTATTCCCTGAGATGCGCCACCGATTTATCCCTCCACAGAATCCGAAGAGCAAAGACCGGAGGGAAAAGGCTGAAACGACTTTGGAGAAATACAAGCAGGAGATAAAGGGGAGGAAAGACAAGCTCAATAGCCAACTGCTGTCGGCATTCGATATGAATCAGAGACAACTGCCCTCACGTCTTCTGGATGAATGGATGAATATCAGGCCTGCAAGCCATTCAGTCAAGCTTCGTACTTATGTCAAGCAGCTCAATGAAGACTGCCGACTACGCCTGCGGAAGTTTCGGAAGGATGGCGATGGGAAAGCTCGTGCCATACCTCTCGTCGGTGAAATGGCTACCTTCCTCTCTCAGGACATCGTCCGCATGATCATAAGCGAAGAGACGAAGAAGCTGATCACCTCCGCTTACTACAATGAGATGCAACGCTCTCTGGCACAATATGCCGGAGAAGAGAATCGCCGCCAATTCAGGGCTATCGTGGCAGAACTGCACCTTCTTGACCCCTCTTCCGGACATCCGTTCCTTTCCGCGACCATGGAGACAGCTCATCGGTATACGGAAGACTTCTACAAATGCTATCTCGAGAAGAAACGGGAATGGTTGGCAAAAACTTTCTATCGGCCGGAACAGGACGAGAATACAAAAAGGCGGATAAGCGTCTTCTTCGTGCCGGATGGCGAAGCACGAAAACTACTGCCCCTCCTCATCCGTCGGCGGATGAAGGAGCAGAACGACCTTCAGGACTGGATCCGAAACAAGCAAGCCCACCCCATAGATCTGCCATCGCATCTCTTCGATAGCAAGATCATGGAGCTACTCAAGGTCAAAGACGGAAAGAAGAAATGGAATGAGGCCTTTAAGGACTGGTGGAGTACCAAGTACCCCGATGGTATGCAGCCTTTCTATGGACTGCGCAGAGAGCTGAATATCCACGGCAAATCTGTATCTTATATACCGTCAGACGGAAAGAAATTCGCCGATTGCTACACGCATCTGATGGAGAAGACCGTACAGGACAAAAAGCGAGAACTGCGAACTGCCGGTAAGCCTGTCCCTCCTGACTTGGCTGCCGACATCAAGCGGAGCTTTCACCGAGCTGTCAATGAACGTGAATTTATGCTCCGCCTCGTGCAAGAAGACGATCGGCTTATGCTGATGGCCATCAACAAGATGATGACCGATAGAGAAGAGGATATTCTGCCCGGACTGAAAAACATAGACAGCATATTGGATGAGGAGAACCAATTCTCGCTGGCTGTCCATGCTAAGGTCTTGGAGAAAGAGGGTGAAGGGGGTGATAATTCTCTTTCTCTTGTGCCGGCAACGATCGAAATCAAGAGCAAGCGTAAGGATTGGTCCAAGTACATACGCTACCGGTACGATCGAAGGGTACCCGGACTTATGTCCCACTTTCCCGAGCACAAAGCTACGTTGGATGAAGTCAAGACTTTGTTGGGCGAATATGATCGCTGCCGCATCAAAATCTTCGATTGGGCATTTGCACTCGAAGGAGCCATCATGTCTGATCGCGACTTGAAGCCGTATTTGCACGAGTCGTCGAGCAGGGAGGGTAAGAGCGGAGAGCATTCTACACTGGTGAAGATGCTGGTGGAGAAGAAAGGCTGTCTGACTCCTGACGAAAGCCAATACCTGATTCTGATTCGCAACAAGGCTGCTCACAACCAATTTCCCTGCGCTGCAGAAATGCCTCTTATTTACCGAGATGTGAGTGCAAAGGTCGGTAGCATTGAGGGATCTTCTGCCAAAGATCTGCCGGAAGGTAGTTCTCTGGTAGATTCATTATGGAAAAAATACGAAATGATAATTCGGAAAATTCTTCCGATTCTCGACCCTGAAAATAGATTTTTTGGAAAGCTTTTGAATAATATGTCTCAACCTATCAATGACTTA","8.10","12.68","132129","MNTVPASENKGQSRTVEDDPQYFGLYLNLARENLIEVESHVRIKFGKKKLNEESLKQSLLCDHLLSVDRWTKVYGHSRRYLPFLHYFDPDSQIEKDHDSKTGVDPDSAQRLIRELYSLLDFLRNDFSHNRLDGTTFEHLEVSPDISSFITGTYSLACGRAQSRFADFFKPDDFVLAKNRKEQLISVADGKECLTVSGLAFFICLFLDREQASGMLSRIRGFKRTDENWARAVHETFCDLCIRHPHDRLESSNTKEALLLDMLNELNRCPRILYDMLPEEERAQFLPALDENSMNNLSENSLNEESRLLWDGSSDWAEALTKRIRHQDRFPYLMLRFIEEMDLLKGIRFRVDLGEIELDSYSKKVGRNGEYDRTITDHALAFGKLSDFQNEEEVSRMISGEASYPVRFSLFAPRYAIYDNKIGYCHTSDPVYPKSKTGEKRALSNPQSMGFISVHNLRKLLLMELLCEGSFSRMQSDFLRKANRILDETAEGKLQFSALFPEMRHRFIPPQNPKSKDRREKAETTLEKYKQEIKGRKDKLNSQLLSAFDMNQRQLPSRLLDEWMNIRPASHSVKLRTYVKQLNEDCRLRLRKFRKDGDGKARAIPLVGEMATFLSQDIVRMIISEETKKLITSAYYNEMQRSLAQYAGEENRRQFRAIVAELHLLDPSSGHPFLSATMETAHRYTEDFYKCYLEKKREWLAKTFYRPEQDENTKRRISVFFVPDGEARKLLPLLIRRRMKEQNDLQDWIRNKQAHPIDLPSHLFDSKIMELLKVKDGKKKWNEAFKDWWSTKYPDGMQPFYGLRRELNIHGKSVSYIPSDGKKFADCYTHLMEKTVQDKKRELRTAGKPVPPDLAADIKRSFHRAVNEREFMLRLVQEDDRLMLMAINKMMTDREEDILPGLKNIDSILDEENQFSLAVHAKVLEKEGEGGDNSLSLVPATIEIKSKRKDWSKYIRYRYDRRVPGLMSHFPEHKATLDEVKTLLGEYDRCRIKIFDWAFALEGAIMSDRDLKPYLHESSSREGKSGEHSTLVKMLVEKKGCLTPDESQYLILIRNKAAHNQFPCAAEMPLIYRDVSAKVGSIEGSSAKDLPEGSSLVDSLWKKYEMIIRKILPILDPENRFFGKLLNNMSQPINDL","1247754 1244203 [Bad Olap 1337 148 17]","TIGR ID: PG1164","hypothetical protein","Cytoplasm","This sequence corresponds to gi:34397202 in Genbank.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Tue Jun 12 16:02:25 MDT 2001","","Tue Jun 12 16:02:25 MDT 2001","Tue Jun 12 16:02:25 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Tue Jun 12 16:02:25 MDT 2001","Tue Jun 12 16:02:25 MDT 2001","","","Tue Feb 13 13:29:01 MST 2001","Mon Mar 7 08:37:04 2005","Tue Feb 13 13:29:01 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 188-1062 are 23% similar to PG0312, a hypothetical protein.","Tue Jun 12 16:04:58 MDT 2001","Tue Feb 13 13:29:01 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Jun 19 13:22:52 MDT 2001","34540887","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Mon Mar 7 08:37:04 2005","","1","","","PG1164" "PG1042","1248320","1247607","714","ATGGAAAAATTTTCTCTTTATGACTTCCTTGCCATTATTTTGCCCGGCATTGCCTTCATCGTGGTCTTTAGAATCATCTTCTCCTCTTTACATCTCTCGCTGCCTGTAGATATTCCCTTAGGTCTGGAGTCTACAATCGTTTATGCTCTTATATGCGGAGCAGTATTGTATGTCCTGAGTTTTTCGCTTGTGAAGCTATTTCCGAGGCTATTCGGTTTGTACCGGCATGTGGCGGATTTGTATCAGAAGATGAAAGCTTTGCATCCGATCATGAACGATACGCTCAATCGGCAAGCAGAACGATGGGGGTTGGGAAAGATCTATCTATCGGAGGAGGAGTTTTGCCAATCGGAAGAAAAGGAGAAAATCAGAATGCTCCAATCGGATTTTTACGATCGTATGTGGTATAGACTCGATTTTCGAGGCAAATTGGGTAGTGCCAAATCCTTTCAATGTTATTATTTCTTCTTCCGGCATTCTTTTTGGGGATTGGTACTGATCAGTCTCATTCTTTTGTCTTATAAACTCTTGGCTTACATCCCTGCCTGTGACATGGAGGACATTGGATGGAGAGAATATTCGGACATTGCTGTCCCCATCATGATTCTGTCTGCTTTGTTCGTTTTCTTGGCACAATGGTTTCGAATCAAGATGGTCGAGAAAATGTACTGGACATTTTATATATCGCTGATAGAACAAGAAAACTCAAACCTA","7.40","0.77","28150","MEKFSLYDFLAIILPGIAFIVVFRIIFSSLHLSLPVDIPLGLESTIVYALICGAVLYVLSFSLVKLFPRLFGLYRHVADLYQKMKALHPIMNDTLNRQAERWGLGKIYLSEEEFCQSEEKEKIRMLQSDFYDRMWYRLDFRGKLGSAKSFQCYYFFFRHSFWGLVLISLILLSYKLLAYIPACDMEDIGWREYSDIAVPIMILSALFVFLAQWFRIKMVEKMYWTFYISLIEQENSNL","1248320 1247607 [Shorter 1336 148 82]","TIGR ID: PG1165","hypothetical protein","Inner membrane, Cytoplasm","No hits found in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-35]?signal-peptide
tmhmm\"[10-30]?\"[44-64]?\"[162-182]?\"[196-214]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Feb 13 13:32:31 MST 2001","Tue Feb 13 13:35:12 MST 2001","Tue Feb 13 13:32:31 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 13 13:32:31 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540888","","","","","","1","","","PG1165" "PG1043","1249306","1250175","870","ATGAACGGTGACTATCGGATATATATCATGGCTGCAAGAGCAGATCTGCTGCATGTGGCAGCAGTTTGTCGTGCTGTGGAGGCTATCGGCGCACGGGTAGTCCAATTCGTGCGTGAGGCTGATACATACGATCCTTGTGTGTGGCTATCGGTAGCCTACAAAGGAGCCAAATCTCTGTTGATAAAGGCTCTGATGCCTATGGCCCGGACGTATCCGATTATGCTCGGTATTCGCAGAGAGGATACACCTGTAGGGCGCATCGGACTCGTAGCTTTCGATCTGGATTCGACGCTTGTGCGCACGGAGATCATGAATGAATTGGCCACCGCACACGGATGCCTCGATGAGATGGGTGAACTGACGGAGGCTGCCATGTCGGGGAGAGAGGAGTTTCCGGACAATTTCAGCAGGCGCGTATCCATGCTGCGAGGCTTGCCTTTGGCAAAGCTGGAGGAGCTATCTGCATCTCTCCCGATCGTTGAGGGGCTGTCTTCGTTGATGCGCAAATTCAAGGAGCAAGGTATTCGCTCTGCCATTATTTCGGGAGGATTCCGACTTTATTCGCACAACATCAAAGAGCGGTACGGCTTCGACTACATCTGCACATCGGAGGCAGAGGTGGAAAATGGCCTGCTGACAGGTCGTCTATCGGGTACCATAGTGGATGCGAAGGTCAAAGCCGAATTTCTCCGCTCCCTGGCCAAGGAGCTATCCCTCACCCCTGCCGAAATAATTGCCGTAGGCGATGGAGCCAATGATGTACCCATGCTTGACTTCTCGGCCGGCAGCATCATATTCAACAGTTCGGCACATCCGCCTTCCATGCCTCAACTACGCATAGAAGCCATTCTCCAATTCATGGGTTGCCGA","5.80","-3.26","31800","MNGDYRIYIMAARADLLHVAAVCRAVEAIGARVVQFVREADTYDPCVWLSVAYKGAKSLLIKALMPMARTYPIMLGIRREDTPVGRIGLVAFDLDSTLVRTEIMNELATAHGCLDEMGELTEAAMSGREEFPDNFSRRVSMLRGLPLAKLEELSASLPIVEGLSSLMRKFKEQGIRSAIISGGFRLYSHNIKERYGFDYICTSEAEVENGLLTGRLSGTIVDAKVKAEFLRSLAKELSLTPAEIIAVGDGANDVPMLDFSAGSIIFNSSAHPPSMPQLRIEAILQFMGCR","1249306 1250175","TIGR ID: PG1170","phosphoserine phosphatase","Cytoplasm, Periplasm","Numerous significant hits to phosphoserine phosphatase protein in gapped BLAST; e.g. residues 89-268 are 42% similar to gb|AAB89113.1| phosphoserine phosphatase of Archaeoglobus fulgidus, residues 40-290 are 33% similar to gb|AAG08345.1|AE004909_1 probable phosphoserine phosphatase of Pseudomonas aeruginosa, residues 81-257 are 37% similar to gb|AAF41385.1| phosphoserine phosphatase of Neisseria meningitidis MC58. ","
InterPro
IPR004469
Domain
Phosphoserine phosphatase SerB
TIGR00338\"[74-287]TserB
InterPro
IPR005834
Domain
Haloacid dehalogenase-like hydrolase
PF00702\"[87-257]THydrolase
InterPro
IPR006383
Domain
HAD-superfamily hydrolase, subfamily IB, PSPase-like
TIGR01488\"[89-260]THAD-SF-IB
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.1000\"[144-268]TG3DSA:3.40.50.1000
PTHR10000\"[45-267]TPTHR10000
SSF56784\"[86-267]TSSF56784


","BeTs to 8 clades of COG0560COG name: Phosphoserine phosphataseFunctional Class: EThe phylogenetic pattern of COG0560 is amtky---e-Rhuj-------Number of proteins in this genome belonging to this COG is 2","***** IPB001757 (E1-E2 ATPases phosphorylation site) with a combined E-value of 1.5e-06. IPB001757B 109-121 IPB001757D 157-197 IPB001757F 244-267","Residues 89-218 are 44% similar to a (PHOSPHATASE PHOSPHOSERINE HYDROLASE) protein domain (PD005736) which is seen in SERB_ARCFU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Feb 13 14:04:53 MST 2001","Tue Feb 13 13:46:48 MST 2001","Tue Feb 13 13:46:48 MST 2001","Fri Mar 9 16:11:41 MST 2001","Tue Feb 13 13:46:48 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 60-288 are 36% similar to PG0591, a predicted phosphoserine phosphatase.","Tue Feb 13 14:04:53 MST 2001","Tue Feb 13 13:46:48 MST 2001","-57% similar to PDB:1F5S CRYSTAL STRUCTURE OF PHOSPHOSERINE PHOSPHATASE FROM METHANOCOCCUS JANNASCHII (E_value = 1.5E_28);-57% similar to PDB:1J97 Phospho-Aspartyl Intermediate Analogue of Phosphoserine phosphatase (E_value = 1.5E_28);-57% similar to PDB:1L7M HIGH RESOLUTION LIGANDED STRUCTURE OF PHOSPHOSERINE PHOSPHATASE (PI COMPLEX) (E_value = 1.5E_28);-57% similar to PDB:1L7N TRANSITION STATE ANALOGUE OF PHOSPHOSERINE PHOSPHATASE (ALUMINUM FLUORIDE COMPLEX) (E_value = 1.5E_28);-57% similar to PDB:1L7O CRYSTAL STRUCTURE OF PHOSPHOSERINE PHOSPHATASE IN APO FORM (E_value = 5.7E_28);","","","Residues 87 to 271 (E-value = 5.3e-15) place PG1043 in the Hydrolase family which is described as haloacid dehalogenase-like hydrolase (PF00702)","Fri Mar 9 16:11:41 MST 2001","34540892","","","Neuwald,A.F. and Stauffer,G.V. 1985. DNA sequence and characterization of the Escherichia coli serB gene. Nucleic Acids Res. 13 (19): 7025-7039. PubMed: 2997734.","","Tue Feb 13 14:04:53 MST 2001","1","","","PG1170" "PG1044","1250498","1251235","738","ATGAAAGTAGGTTTGTTCATCCCCTGTTATGTCAATGCAGTGTATCCGGAAGTGGGTATCGCCACGTACAAACTGCTGAAGAGTTTGGACATAGATGTCGACTACCCGATGGATCAGACATGTTGCGGCCAGCCTATGGCCAATGCCGGATTCGAACAGAAAGCTCAAAAGCTGGCTTTGCGATTCGAAGAGCTGTTCGAGTCGTATGATGTAGTCGTAGGGCCATCGGCCAGTTGCGTTGCTTTCGTGAAAGAAAACTATGATCATATCCTCAGACCGACAGGACATGTCTGCAAGTCGGCAGCCAAGGTTCGGGATATATGCGAGTTCTTGCACGATGACCTGAAGATCACCAGCCTCCCCTCCCGATTCGCCCATAAGGTGAGCCTGCACAACAGTTGCCACGGTGTGCGCGAACTGCATCTGTCCACCCCCAGTGAAGTGCACCGACCGTACCACAACAAGGTGCGCCGGCTATTGGAGATGGTGCAGGGCATAGAGGTATTCGAGCCGAAGCGAATAGACGAATGCTGCGGTTTCGGCGGTATGTACTCGGTGGAGGAGCCGGAGGTATCCACCTGTATGGGGCATGACAAGGTGCTGGATCACATATCCACAGGTGCGGAGTACATCACAGGGCCGGACAGCTCGTGCCTCATGCATATGCAGGGAGTGATAGACAGAGAGAAATTGCCGATCAAGACAATTCATGCAGTAGAAATTTTAGCAGCAAACTTA","6.30","-5.39","27495","MKVGLFIPCYVNAVYPEVGIATYKLLKSLDIDVDYPMDQTCCGQPMANAGFEQKAQKLALRFEELFESYDVVVGPSASCVAFVKENYDHILRPTGHVCKSAAKVRDICEFLHDDLKITSLPSRFAHKVSLHNSCHGVRELHLSTPSEVHRPYHNKVRRLLEMVQGIEVFEPKRIDECCGFGGMYSVEEPEVSTCMGHDKVLDHISTGAEYITGPDSSCLMHMQGVIDREKLPIKTIHAVEILAANL","1250414 1251235 [Shorter 1341 88 81]","TIGR ID: PG1171","conserved hypothetical protein","Cytoplasm, Periplasm","Numerous significant hits in gapped BLAST; e.g. residues 1-244 are 39% similar to emb|CAB48892.1| hypothetical protein of Streptomyces coelicolor A3(2), residues 1-244 are 36% similar to gb|AAF11462.1|AE002030_1 fumarate reductase-related protein of Deinococcus radioduran, residues 1-242 are 37% similar to dbj|BAB05551.1| glycolate oxidase of Bacillus halodurans.This sequence is similar to BT4455.","
InterPro
IPR004017
Domain
Cysteine-rich region, CCG
PF02754\"[26-84]T\"[162-223]TCCG


","BeTs to 9 clades of COG0247COG name: Fe-S oxidoreductasesFunctional Class: CThe phylogenetic pattern of COG0247 is AmT--Q-cEBrHUJ-------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 72-188 are 25% similar to a (PROTEIN IRON-SULFUR REDUCTASE SUBUNIT) protein domain (PD002446) which is seen in O24951_HELPY.Residues 1-67 are 44% similar to a (IRON-SULFUR SUBUNIT PROTEIN REDUCTASE) protein domain (PD004891) which is seen in O07020_BACSU.","","Tue Jun 12 15:50:33 MDT 2001","","Tue Jun 12 15:50:33 MDT 2001","Tue Jun 12 15:50:33 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Tue Jun 12 15:50:33 MDT 2001","Tue Jun 12 15:50:33 MDT 2001","","","Thu Feb 22 17:15:09 MST 2001","Mon Jan 5 14:55:48 2004","Tue Feb 13 14:16:36 MST 2001","","Tue Jun 19 13:29:32 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 13 14:16:36 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 26 to 84 (E-value = 1.6e-10) place PG1044 in the CCG family which is described as Cysteine-rich domain (PF02754)Residues 162 to 223 (E-value = 5.4e-09) place PG1044 in the CCG family which is described as Cysteine-rich domain (PF02754)","Mon Jan 5 14:55:48 2004","34540893","","","","","","1","","","PG1171" "PG1045","1251316","1252599","1284","ATGGTGCGCCACAAACGCGACATCCAGCGTGATACGGTGCCGGAGTGGGAAGATCTGCGCCAACTGGCTCATGAAATCAAACGCTACAATGTGACACACTTGGATGAGCTGCTGCTGCGATTTGAAGAAAATGCTCGTCGCAACGGTGTCATCGTCCATTGGGCTAAGGACGCCAAGGAGCACAACGAGATCCTGTATGGCATTCTGCGTGATCATGGCGTCAAAAAATTCGTGAAGAGCAAATCCATGCTTACGGAGGAGTGCCACCTGAACGAATATCTTATAGAAAAGGGTATAAACGTGATCGAAACGGACCTCGGCGAGCGTATCCTCCAGCTTATGGAAGAGCCACCGAGCCACATCGTGATGCCGGCTATCCATATCAAACGCGAGGCTGTAAGCGATCTATTCCATGACAAGTTGGGTACGGAGAAGGGCAATTACGACCCTACGTATCTGACACGTGCAGCACGCAAAAGCCTGCGCGAAGACTTTATCAGCGCGGATGCAGCAATGACGGGCGGCAACTTTGCCGTTGCCTCTACAGGCGAAGTGGTCGTTTGCACCAATGAGGGCAATGCCGATATGGGTATGGCTTGTCAGAAATTGAACATTTGCTCTTTCGGGCTGGAGAAATTGGTACCCGACTTGGATGCCGTAGGGGTATTCACCCGACTTCTGGCGCGTTCGGGTACAGGACAGCCCTCTACCACCTATACGGCACACTACCGCAAGCCTCATGAAGGTGGAGAGCTACACTATATCATCGTGGACAACGGAAGGACGGACATCATCGAAAATGAGGAGCACGTAAAAACGCTCAACTGCATAAGATGCGGTGCATGTATGAATACGTGTCCCGTCTATCGTCGCTCCGGCGGTTATTCCTACACTTATTTTATCCCCGGGCCTATCGGGATCAATCTGGGGATGCTCAAGGATCCGCGTCGGTATAGCGATAATGTATCGGCCTGCTCGCTCTGTCTCTCCTGTTCGAATGTGTGCCCTGTGAAAATCGACCTCGGTGAGCAGATCTATCGTTGGCGTCAGGATTTGGATCATTTGGGGCGTGCCAGCCAAGAGAAAAAGCTGATGTCGGCCGGTATGAAATACCTGATGGATAGTCCGTGGCGTTTCAATACGGCTCTGAAAATGGCTCCCATGGCCAACAGTCTGCCTCGGTTCCTGCTGTACAACGGCCTGAACGCATGGGGCAAGGGGCGCGAATTGCCTCGCTTTGCCTCTACTTCGTTCAATAATTGGTGGAAGAAGAATATCAAGAAG","8.10","8.07","48705","MVRHKRDIQRDTVPEWEDLRQLAHEIKRYNVTHLDELLLRFEENARRNGVIVHWAKDAKEHNEILYGILRDHGVKKFVKSKSMLTEECHLNEYLIEKGINVIETDLGERILQLMEEPPSHIVMPAIHIKREAVSDLFHDKLGTEKGNYDPTYLTRAARKSLREDFISADAAMTGGNFAVASTGEVVVCTNEGNADMGMACQKLNICSFGLEKLVPDLDAVGVFTRLLARSGTGQPSTTYTAHYRKPHEGGELHYIIVDNGRTDIIENEEHVKTLNCIRCGACMNTCPVYRRSGGYSYTYFIPGPIGINLGMLKDPRRYSDNVSACSLCLSCSNVCPVKIDLGEQIYRWRQDLDHLGRASQEKKLMSAGMKYLMDSPWRFNTALKMAPMANSLPRFLLYNGLNAWGKGRELPRFASTSFNNWWKKNIKK","1251148 1252599 [Bad Olap 1340 88 18]","TIGR ID: PG1172","conserved hypothetical protein (containing ferredoxin-like domain)","Cytoplasm, Periplasm","Numerous significant hits in gapped BLAST; e.g. residues 11-425 are 38% similar to gb|AAB18034.1| hypothetical protein of Escherichia coli, residues 11-425 are 38% similar to gb|AAG54641.1|AE005208_9 orf, hypothetical protein of Escherichia coli O157:H7, residues 4-411 are 37% similar to gb|AAD07206.1| conserved hypothetical iron-sulfur protein of Helicobacter pylori 26695.This sequence is similar to BT4456.","
InterPro
IPR001450
Domain
4Fe-4S ferredoxin, iron-sulfur binding
PF00037\"[269-292]T\"[318-341]TFer4
PS00198\"[276-287]T\"[325-336]T4FE4S_FERREDOXIN
InterPro
IPR009051
Domain
Alpha-helical ferredoxin
SSF46548\"[233-364]THelical_ferredxn
InterPro
IPR012285
Domain
Fumarate reductase, C-terminal
G3DSA:1.10.1060.10\"[266-352]TFum_reductase_C


","BeTs to 5 clades of COG1139COG name: Uncharacterized conserved protein containing a ferredoxin-like domainFunctional Class: CThe phylogenetic pattern of COG1139 is a-t-----eb--uj-------Number of proteins in this genome belonging to this COG is 1","***** IPB001450 (4Fe-4S ferredoxin, iron-sulfur binding domain) with a combined E-value of 6.4e-06. IPB001450 276-287 IPB001450 325-336","Residues 251-350 are 33% similar to a (CONSERVED HYPOTHETICAL PROTEIN) protein domain (PD128137) which is seen in O29447_ARCFU.Residues 274-393 are 40% similar to a (IRON-SULFUR PROTEIN DEHYDROGENASE SUCCINATE SUBUNIT) protein domain (PD000788) which is seen in YKGF_ECOLI.Residues 4-262 are 39% similar to a (PROTEIN IRON-SULFUR CONSERVED YVF) protein domain (PD014033) which is seen in O24950_HELPY.","","Tue Jun 12 15:43:44 MDT 2001","","Tue Jun 12 15:43:44 MDT 2001","Tue Jun 12 15:43:44 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Tue Jun 12 15:43:44 MDT 2001","Tue Jun 12 15:43:44 MDT 2001","","","Fri Apr 6 17:36:51 MDT 2001","Mon Jan 5 14:57:20 2004","Tue Feb 13 14:28:32 MST 2001","Tue Jun 19 13:38:28 MDT 2001","Tue Jun 19 13:38:28 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 13 14:28:32 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Jun 19 13:38:28 MDT 2001","34540894","","","","","","1","","","PG1172" "PG1046","1252578","1253189","612","GTGGAAGAAGAATATCAAGAAGTAATCATCATGGACAGCAGACAAATCATATTAGACAGAATCAAACAGCACACCAAGCAGCGTGAGCCGAAACCGGAGATGAACTTTACTCCCATTACCTATCCGGACAAGGTGGCCCGCTTCATCGAAATATCGCGTGCAGTGGGTGGCGATGCCATAGAGCTTCAGCCCGGACAGGACATTAACGAAGTGATCAGAGCCGCATATCCCGATGCCAAACGGATCGGATCGGCCCTTCCATACATTCATATAGCTACCTACAAACCGGATGAAGTAGAGAATCCGGGCGACATGAACGGTACGGACTTGGCTATTATCGAAGGTGAAATAGGGGTGTGCGAGAACGGATGTGTATGGGTGGATCAGACGATACAGAAGCGAGCCATGTTTTTTATTTCGGAATACCTGGTCATCGTCTTGGACAAGACAAAGCTCGTACACAACATGCACGAGGCTTATAAACGTGTGGCCGAAATAGATTCGCAGTCTCCATACTCCTGCTTTATCAGTGGGCCCTCCAAGACTGCCGATATAGAACAATCTCTGGTAATCGGGGCACATGGTGCCCGCGGAGCCATCGTGATATTGAAA","4.90","-7.93","22842","VEEEYQEVIIMDSRQIILDRIKQHTKQREPKPEMNFTPITYPDKVARFIEISRAVGGDAIELQPGQDINEVIRAAYPDAKRIGSALPYIHIATYKPDEVENPGDMNGTDLAIIEGEIGVCENGCVWVDQTIQKRAMFFISEYLVIVLDKTKLVHNMHEAYKRVAEIDSQSPYSCFISGPSKTADIEQSLVIGAHGARGAIVILK","1252575 1253189","TIGR ID: PG1173","hypothetical protein","Cytoplasm","One weak hit in gapped BLAST; e.g. residues 98-203 is 31% similar to residues 109-217 a hypothetical protein from Campylobacter jejuni emb|CAB72559.1|.","
InterPro
IPR003741
Family
Protein of unknown function DUF162
PF02589\"[107-204]TDUF162


","BeTs to 4 clades of COG1556COG name: Uncharacterized ACR, YkgG familyFunctional Class: SThe phylogenetic pattern of COG1556 is a-------eb--uj-------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Tue Jun 12 15:36:20 MDT 2001","","Tue Jun 12 15:36:20 MDT 2001","Tue Jun 12 15:36:20 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Tue Jun 12 15:36:20 MDT 2001","Tue Jun 12 15:36:20 MDT 2001","","","Tue Feb 13 14:42:02 MST 2001","Tue Jun 19 13:49:38 MDT 2001","Tue Feb 13 14:42:02 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 13 14:42:02 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 80 to 204 (E-value = 9e-06) place PG1046 in the DUF162 family which is described as Uncharacterized ACR, YkgG family COG1556 (PF02589)","Tue Jun 19 13:49:38 MDT 2001","34540895","","","","","","1","","","PG1173" "PG1047","1253800","1253306","495","TTGGGGCAAATCAGTACAAACAGCATGGATAAGAAATCTTTTCAGGAATATTATGCCACCGGCTTTAGCCATTGCTATGGTTGTGGCACATCGAACGAGCACGGTCTGCACGTAAAGAGTTATTGGGCGGAAGAGCATCCGGATGAGACGGTAGCGTATTTCCGCCCCGATTCACATCATACGGGAGGATTCCCCGGCTTTGTCTATGGAGGGCTGATTGCCGCTATCCTTGACTGCCATGGCAATGGTACCGCAGCCGCTGCAGGTTATCGTTTTCAAAGTCGCCCGATGGATTCGGAGCCGAATCTGAGATACGTGACAGCTAATCTGAATCTCAACTATCGCCGTCCTACCCCGATGGGAGTAGACTTGGAGCTACGCGCCCATATCAAAGAGGTAACGGACCGGAAAGTACTGATGGAGCTATCGCTCATTGCAGAAGGGCAGGTAACGGTGGAAGGGAGCATGCTATCCGTCCTGCTGCCCGAAAAGAAG","6.50","-2.22","18269","LGQISTNSMDKKSFQEYYATGFSHCYGCGTSNEHGLHVKSYWAEEHPDETVAYFRPDSHHTGGFPGFVYGGLIAAILDCHGNGTAAAAGYRFQSRPMDSEPNLRYVTANLNLNYRRPTPMGVDLELRAHIKEVTDRKVLMELSLIAEGQVTVEGSMLSVLLPEKK","1253800 1253306","TIGR ID: PG1174","hypothetical protein","Cytoplasm","One weak hit in gapped BLAST; e.g. residues 16-138 are 28% similar to emb|CAA16476.1| hypothetical protein of Streptomyces coelicolor. ","
InterPro
IPR006683
Domain
Thioesterase superfamily
PF03061\"[65-153]T4HBT


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Feb 13 14:59:40 MST 2001","Tue Feb 13 14:59:40 MST 2001","Tue Feb 13 14:59:40 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 13 14:59:40 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 65 to 154 (E-value = 4.3e-08) place PG1047 in the 4HBT family which is described as Thioesterase superfamily (PF03061)","","34540896","","","","","","1","","","PG1174" "PG1048","1255969","1254266","1704","ATGATACGATATTTCCAACACCGATTCGCTCTCTCTCGTAAGGGTGCGCAGGATCTTGCCAAAGGCATTGCATGGACTACGGTTTTGAATGTCGGATTTATGTTGCCTGCCATATTCACTTTTCTTTTCCTCGAAGACTATCTGCAAGGATCCGCCACACATGGTATTTGGTATTATATAGCCATGGGAGCGGCTTTTATGGCGGTGCTCTTCGTTATAGCTCTCTTCCAATACACAAGCCTGTACACCAAGATATATACAGAGAGTGCCAACCGCCGCATCGCCTTGGCTGAAAAACTACGCAAACTCCCATTGGCTTTCTTCGGAGAGAAGAATCTGTCCGATCTGACTTCCACGATGATGGAGGATAGTACGGTGATGGAGACTGTCTTCTCTCACAGTATACCCCAGCTCTTTGCATCGTTGGTCAGTCTCTTTTTGATCGGTATAGGGCTCTTCTGCTATAATTGGCAGCTTTCGTTGGCACTCTTTTGGGTTGTGCCTGTAGCAGCCTTAGCAATTGTCTTTTCCAAAAAGATGTTGAACAAATCATTCCACTCGAACTACCATGTCAAACGAGAGGTCACCGAGCATATACAGGAAGGAATCGAAGAGATACAGGAGATAAAATCATATAATGGCGAAGAAGAATTTGCCGAGCGCTTCGATGCCAAACTCCATGCCTATGAGAAGAGCCTTATTCGATGTGAACTTGTTGTCGGTGCCGTCCTTAATGCTTCACATATAATCCTCAAACTGGGACTTGCCTCTGTAATCATAATGGGAGCTTATCTCTTGTCAGAAGGAACAATTGATCTATTCACTTATTTAGTCTTTCTGCTTATCGGATCGAGCATATATAATCCCATAAGTGAAGTATTCAGCAATTTGCTACTCTTGCAGTACCTCGATGTACGTATCGATCGGGTGAGAGAGATGGATGCTATGCCGATACAGGAAGGTAAAACGGACTATTCTGTCCGGAACTTCGATATTATATTCCAAAACGTAAATTTCTCCTACGAAAAGGGGAAGCAAGTACTGCGCAATGTATCGTTCACGGCCAAACAAGGAGAAGTCACAGCCCTCGTCGGTCCGTCGGGTGGAGGAAAGAGCACATCGGCCAAGTTGGCTGCACGCTTTTGGGATATAGATGGAGGAAAGATCTTTTTGGGAGGGGAAGACATTTCGCAAATCGAACCCGAAACCCTGCTACGTCATTATGCCATCGTCTTCCAAGATGTACTGCTCTTCAATGCATCGGTGGCCGATAATATCCGCATAGGTAAACCTGATGCTACAGATGAAGAGCTCAAACGTGTAGCTCGGTTGGCAAGATGCGACGAATTTGTAGATCGTCTGCCGAATGGATATGACACTTTGATCGGTGAAAATGGTGAGAACCTTTCAGGAGGTGAACGTCAGCGCATTTCTATAGCCAGAGCTTTACTCAAGGATGCTCCGATTGTGCTGCTGGATGAAGCTACGGCAAGTCTCGATGTTGAGAATGAGACACTGATACAGGCCGGTATATCCGAACTGATCAAAAACAAGACAGTCCTCATTATCGCTCATCGTATGCGCACTGTAGCCAATGCCCATAAGATTGTTGTACTCAAAGAAGGGACTGTAGCCGAATGTGGCAGTCCGGCCGAATTGATGGCCATGAACGGTGTGTTTGCTCGAATGGTGGCGGCGCAGAAG","6.20","-5.49","63394","MIRYFQHRFALSRKGAQDLAKGIAWTTVLNVGFMLPAIFTFLFLEDYLQGSATHGIWYYIAMGAAFMAVLFVIALFQYTSLYTKIYTESANRRIALAEKLRKLPLAFFGEKNLSDLTSTMMEDSTVMETVFSHSIPQLFASLVSLFLIGIGLFCYNWQLSLALFWVVPVAALAIVFSKKMLNKSFHSNYHVKREVTEHIQEGIEEIQEIKSYNGEEEFAERFDAKLHAYEKSLIRCELVVGAVLNASHIILKLGLASVIIMGAYLLSEGTIDLFTYLVFLLIGSSIYNPISEVFSNLLLLQYLDVRIDRVREMDAMPIQEGKTDYSVRNFDIIFQNVNFSYEKGKQVLRNVSFTAKQGEVTALVGPSGGGKSTSAKLAARFWDIDGGKIFLGGEDISQIEPETLLRHYAIVFQDVLLFNASVADNIRIGKPDATDEELKRVARLARCDEFVDRLPNGYDTLIGENGENLSGGERQRISIARALLKDAPIVLLDEATASLDVENETLIQAGISELIKNKTVLIIAHRMRTVANAHKIVVLKEGTVAECGSPAELMAMNGVFARMVAAQK","1255969 1254266","PG1048 like PG 1049 possesses both NBD and MSD domains. Their function may be in relation to multidrug resistance. See ABC Transporters Analysis.TIGR ID: PG1175","ABC transporter, ATP-binding protein","Inner membrane, Cytoplasm","Numerous significant hits to ABC transporter, ATP-binding protein in gapped BLAST; e.g. residues 93-567 are 33% similar to gb|AAD35376.1|AE001710_11 ABC transporter, ATP-binding protein of Thermotoga maritima, residues 67-563 are 34% similar to gb|AAF95026.1| transport ATP-binding protein of Vibrio cholerae, residues 56-567 are 29% similar to dbj|BAB07610.1| ABC transporter (ATP-binding protein) of Bacillus halodurans.This sequence is similar to BT0509.","
InterPro
IPR001140
Domain
ABC transporter, transmembrane region
PF00664\"[19-290]TABC_membrane
InterPro
IPR003439
Domain
ABC transporter related
PD000006\"[468-511]TABC_transporter
PF00005\"[358-542]TABC_tran
PS00211\"[469-483]TABC_TRANSPORTER_1
PS50893\"[332-566]TABC_TRANSPORTER_2
InterPro
IPR003593
Domain
AAA+ ATPase, core
SM00382\"[357-543]TAAA
InterPro
IPR011527
Domain
ABC transporter, transmembrane region, type 1
PS50929\"[22-301]TABC_TM1F
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[297-564]TG3DSA:3.40.50.300
PTHR19242\"[9-568]TPTHR19242
PTHR19242:SF92\"[9-568]TPTHR19242:SF92
SSF52540\"[332-565]TSSF52540
SSF90123\"[9-488]TSSF90123


","BeTs to 12 clades of COG1132COG name: ABC-type multidrug/protein/lipid transport system, ATPase componentFunctional Class: RThe phylogenetic pattern of COG1132 is ---KYQVCEBRHUJGP--inXNumber of proteins in this genome belonging to this COG is 3","***** IPB001617 (ABC transporters family) with a combined E-value of 7.5e-11. IPB001617A 363-378 IPB001617B 470-481","Residues 392-497 are 29% similar to a (ABC TRANSPORTER TETB PLASMID) protein domain (PD201162) which is seen in Q9Z4Q2_BBBBB.Residues 410-466 are 54% similar to a (ATP-BINDING TRANSPORT PROTEIN TRANSMEMBRANE TRANSPORTER) protein domain (PD000101) which is seen in O80725_ARATH.Residues 348-399 are 55% similar to a (ATP-BINDING TRANSPORT PROTEIN TRANSPORTER ABC) protein domain (PD000005) which is seen in YD48_MYCTU.Residues 469-511 are 72% similar to a (ATP-BINDING TRANSPORT PROTEIN TRANSPORTER ABC) protein domain (PD000006) which is seen in Q9Z375_YERPE.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Tue Dec 2 16:40:17 2003","Tue Feb 13 15:50:11 MST 2001","Tue Dec 2 16:40:17 2003","Tue Feb 13 15:27:38 MST 2001","Mon May 7 16:29:41 MDT 2001","Tue Feb 13 15:27:38 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 60-563 are 32% similar to PG1497, a predicted ABC transporter protein, MSD-NBD fusion protein. Similarities are also seen to PG1049, PG0566, PG0584, PG1917, PG1477, PG1451, PG0618, PG0233, PG0605, PG1929, PG0921, PG0903, PG1211, PG1923, PG1533, PG0254, PG0844, many of which are ABC transporter proteins. ","Tue Feb 13 16:06:28 MST 2001","Tue Feb 13 15:29:11 MST 2001","-50% similar to PDB:2HYD Multidrug ABC transporter SAV1866 (E_value = 1.1E_61);-50% similar to PDB:2ONJ Structure of the multidrug ABC transporter Sav1866 from S. aureus in complex with AMP-PNP (E_value = 1.1E_61);-67% similar to PDB:2GHI Crystal Structure of Plasmodium yoelii Multidrug Resistance Protein 2 (E_value = 2.9E_51);-65% similar to PDB:1MT0 ATP-binding domain of haemolysin B from Escherichia coli (E_value = 2.7E_49);-65% similar to PDB:2FF7 The ABC-ATPase of the ABC-transporter HlyB in the ADP bound state (E_value = 2.7E_49);","","","Residues 19 to 290 (E-value = 2.2e-21) place PG1048 in the ABC_membrane family which is described as ABC transporter transmembrane region (PF00664)Residues 358 to 542 (E-value = 1.1e-58) place PG1048 in the ABC_tran family which is described as ABC transporter (PF00005)","Tue Dec 2 16:40:17 2003","34540897","","","","","","1","","","PG1175" "PG1049","1257737","1256019","1719","ATGGGCAATCGAGCCATTCTCTTGCCCGTTTCATTAGTGCTTTCGGGTCTCAACGGGCTTGTCTCCTTAGTCCCGTTCGTCTTGATATGGCTGATCGTGCGTACGCTCCTTGGAGGAGAGGGTGCCATCGAGGATAATCGGGTATTTGTGTATGCCTGGTGGGCAGTCGGCATAGCCGCATTCGGTGTCCTGACCTATTTTCTCTCCCTTTCCCTTTCACATCTTGCTGCTTTCAGGGTAGAGGTCAATATGCGTCGGGAAGCTATGCACCGTGTAGTGCGTATGCCATTGGGTTACTTCGACAAACGCCTGAGCGGAAAGATGCGCAAGGTCATCGATGAGGACTCATCGCAGACGCACACTTTCATAGCCCATATTTTGCCCGATGTTATAGGCAGCATGATGGCTCCGGTCGGGGTGTTGGTGCTGATCTTCATATTCGATTGGCGGTTGGGTATTGCCTGCCTGCTCCCAATTGCTTTTGCCGTGGGAGCCATGTCTTTTATGTTGAATCCGAAGCAAAATAAGTTCCAACGCCGGTATCTCGATGCACAGGAGAAGATGAGCAGTGAGGCCGTAGAGTATGTGCGTGGCATACCGGTAGTGAAAGTCTTCCAGCAGAGCGTTTATTCCTTCAAACGTTTCTACCAAAGTATTATCGAGTATAAGAAATTGGTGACGGAATATACTTTGGGCTGGCAGAAGCCAATGGCTTTCTATGTCATGTTTACCAATAGTTTTGCTTTTTTCCTCGTGCCTGTAGCTGTTTGGCTTATAGGCCGAACGGGCAATACGGTCGATATTATAGCCGATATGTTTCTGTACCTGCTGATTACACCCGTTTTTACGACCAATATCATGAAGATGGCCTCCCTTAGTCAGAACCTCTTTTTACTTAATGAAGCAGTCACCAGACTGGAGAATCTGACCGGAGAGGAGCCACTTGCCACACTTGAAAGACCGCAGACTCCTGTCACGAATGAAGTCTGCTTCGATCATGTTACCTTTCGCTATACCGGTGCAGTACAGGATGCCGTCAGTGATATTGATTTTTCCATCCCTTCAGGGCAAACCTATGCGCTGGTCGGAACTTCCGGAGGGGGTAAGACCACTATAGCCCGACTCATACCTCGCTTTTGGGACGCTACCCAAGGCCATATACGTATCGGTGGAGTGGATGTAAGGGATATGGCAAAAGAAGAGCTGATGGACAGGATCTCTTTCGTCTTTCAGAATACCAAACTTTTCAGAACCACCATTCGTGAGAATATTACCTATGGCAGTCCGGATGCATCCGAGGATGCTTTGGCTCGTGCCATCGACCTTTCTCAAAGCCGTGAAATTATAGAGCGTTTGCCCGATGGACTGCAAACGAAGATAGGAGCCGATGGCACGTATCTCTCCGGAGGGGAGCAGCAGCGCATAGCTTTGGCTCGTGCCATACTCAAGGATGCTCCTATTGTGGTGCTCGATGAAGCCACAGCCTTTGCTGATCCCGAAAACGAGAAATTGATACAGCAGGCTTTGCACGAACTGACGAAAGGAAAGACGGTGCTGATGATTGCTCATCGACTGACGAGCGTACAGCATGTGGATCGTATCCTTGTGATAGAGAAGGGACGAATCGCAGAACAGGGTACCCACGAAGAACTCCTGACACAAGGTGGTCTTTACAAATCCATGTGGGAGGAATACCAGCGATCCGTTTCTTGGACATTA","7.10","0.35","64351","MGNRAILLPVSLVLSGLNGLVSLVPFVLIWLIVRTLLGGEGAIEDNRVFVYAWWAVGIAAFGVLTYFLSLSLSHLAAFRVEVNMRREAMHRVVRMPLGYFDKRLSGKMRKVIDEDSSQTHTFIAHILPDVIGSMMAPVGVLVLIFIFDWRLGIACLLPIAFAVGAMSFMLNPKQNKFQRRYLDAQEKMSSEAVEYVRGIPVVKVFQQSVYSFKRFYQSIIEYKKLVTEYTLGWQKPMAFYVMFTNSFAFFLVPVAVWLIGRTGNTVDIIADMFLYLLITPVFTTNIMKMASLSQNLFLLNEAVTRLENLTGEEPLATLERPQTPVTNEVCFDHVTFRYTGAVQDAVSDIDFSIPSGQTYALVGTSGGGKTTIARLIPRFWDATQGHIRIGGVDVRDMAKEELMDRISFVFQNTKLFRTTIRENITYGSPDASEDALARAIDLSQSREIIERLPDGLQTKIGADGTYLSGGEQQRIALARAILKDAPIVVLDEATAFADPENEKLIQQALHELTKGKTVLMIAHRLTSVQHVDRILVIEKGRIAEQGTHEELLTQGGLYKSMWEEYQRSVSWTL","1257752 1256019","PG1049 like PG1048 possesses both NBD and MSD domains. Their function may be in relation to multidrug resistance.See ABC Transporters Analysis.TIGR ID: PG1176","ABC transporter protein (NBD and MSD domains)","Inner membrane, Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 10-571 are 35% similar to emb|CAA21388.1| ABC Transporter, similar to many, of Yersinia pestis, residues 10-571 are 35% similar to emb|CAB46573.1| lipoprotein inner membrane ABC-transporter of Yersinia enterocolitica, residues 73-573 are 34% similar to gb|AAF23809.1|AF213822_24 lipoprotein inner membrane ABC-transporter of Zymomonas mobilis.This sequence corresponds to BT0508.","
InterPro
IPR001140
Domain
ABC transporter, transmembrane region
PF00664\"[12-205]TABC_membrane
InterPro
IPR003439
Domain
ABC transporter related
PD000006\"[467-509]TABC_transporter
PF00005\"[356-540]TABC_tran
PS00211\"[467-481]TABC_TRANSPORTER_1
PS50893\"[329-564]TABC_TRANSPORTER_2
InterPro
IPR003593
Domain
AAA+ ATPase, core
SM00382\"[355-541]TAAA
InterPro
IPR011527
Domain
ABC transporter, transmembrane region, type 1
PS50929\"[10-296]TABC_TM1F
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[294-562]TG3DSA:3.40.50.300
PTHR19242\"[1-571]TPTHR19242
PTHR19242:SF92\"[1-571]TPTHR19242:SF92
SSF52540\"[329-569]TSSF52540
SSF90123\"[7-486]TSSF90123


","BeTs to 12 clades of COG1132COG name: ABC-type multidrug/protein/lipid transport system, ATPase componentFunctional Class: RThe phylogenetic pattern of COG1132 is ---KYQVCEBRHUJGP--inXNumber of proteins in this genome belonging to this COG is 3","***** IPB001617 (ABC transporters family) with a combined E-value of 1.8e-11. IPB001617A 361-376 IPB001617B 468-479","Residues 390-508 are 26% similar to a (ABC TRANSPORTER TETB PLASMID) protein domain (PD201162) which is seen in Q9Z4Q2_BBBBB.Residues 96-342 are 28% similar to a (HYPOTHETICAL ABC TRANSPORTER ATP-BINDING) protein domain (PD116992) which is seen in YD48_MYCTU.Residues 514-551 are 63% similar to a (ATP-BINDING TRANSPORT PROTEIN TRANSMEMBRANE MULTIDRUG) protein domain (PD000383) which is seen in Q47258_ECOLI.Residues 402-464 are 44% similar to a (ATP-BINDING TRANSPORT PROTEIN TRANSMEMBRANE TRANSPORTER) protein domain (PD000101) which is seen in O04711_ARATH.Residues 346-397 are 57% similar to a (ATP-BINDING TRANSPORT PROTEIN TRANSPORTER ABC) protein domain (PD000005) which is seen in Q9ZG01_YERPE.Residues 467-509 are 72% similar to a (ATP-BINDING TRANSPORT PROTEIN TRANSPORTER ABC) protein domain (PD000006) which is seen in YD48_MYCTU.Residues 26-338 are 19% similar to a (PROTEIN ATP-BINDING TRANSPORT YBTQ) protein domain (PD134774) which is seen in Q9Z375_YERPE.","","Tue Jun 12 15:17:56 MDT 2001","","Tue Jun 12 15:17:56 MDT 2001","Tue Jun 12 15:17:56 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Tue Jun 12 15:17:56 MDT 2001","Tue Jun 12 15:17:56 MDT 2001","","Tue Dec 2 16:38:36 2003","Sat Jun 2 16:57:21 MDT 2001","Tue Dec 2 16:38:36 2003","Tue Feb 13 16:03:37 MST 2001","Tue Dec 2 16:38:36 2003","Fri Jun 15 22:29:50 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 23-561 are 30% similar to PG1048, a predicted ABC transporter, ATP-binding protein. Similarities are also seen to PG1497, PG0605, PG1477, PG0618, PG0921, PG0254, PG1917, PG1451, PG0844, PG1533, PG0584, PG1211, PG0233, PG1929, PG0566, PG1923, PG1467, PG0903, many of which are ABC transporter proteins.","Tue Jun 19 13:53:23 MDT 2001","Tue Feb 13 16:03:37 MST 2001","-51% similar to PDB:2HYD Multidrug ABC transporter SAV1866 (E_value = 8.3E_62);-51% similar to PDB:2ONJ Structure of the multidrug ABC transporter Sav1866 from S. aureus in complex with AMP-PNP (E_value = 8.3E_62);-64% similar to PDB:2GHI Crystal Structure of Plasmodium yoelii Multidrug Resistance Protein 2 (E_value = 2.3E_48);-63% similar to PDB:1MV5 Crystal structure of LmrA ATP-binding domain (E_value = 1.1E_45);-63% similar to PDB:2FF7 The ABC-ATPase of the ABC-transporter HlyB in the ADP bound state (E_value = 1.9E_42);","","","Residues 5 to 281 (E-value = 6.1e-15) place PG1049 in the ABC_membrane family which is described as ABC transporter transmembrane region (PF00664)Residues 356 to 540 (E-value = 9.3e-56) place PG1049 in the ABC_tran family which is described as ABC transporter (PF00005)","Tue Dec 2 16:38:36 2003","34540898","","","","","","1","","","PG1176" "PG1050","1258972","1257890","1083","ATGGCATACCAATCCAAGAATACCGATGAGCATGTAACATTTGCAGACGCACTCCTTTCAAAGCGTTATCGCAAAGCACAAAACGACTTCCTCAATCAGGTTGACAGGCTTATCGATTGGCGTCCGATCAGGACGCTGATCAACAAGAAATACACCAAGCGACAAAATGCCATCGGCGCCCCGGCTTATGACGTGATTCTCTTATTCAAGATGTTGCTTTTGGAGACATGGTACAACCTCAGTGATTGTGCTTTGGAGGAGCGCATCAATGATTCAATCACCTTTTCCCGATTCTTGGGGCTGAAGATGGAAGAGGTTTCTCCCGACCACAGTACCATCAGTCGATTTCGTTCGGCACTGACAGAGTTGGGTCTCATGGACAAACTATTGGCGCAGTTTAACAAACAACTTTCCCGCCATCACATTTCGGTCAGGGAAGGGGTGCTTGTCGATGCAAGCCTTGTGGAGACGCCGCATAAACCCAACGGAAGCATTACGATTGAAGTCGCAGACGACAGAGAAGACAATCGGAGCGAGGAGGAAAAAGAGGCAGAGGAGGATTATCAAAAACAGGTTGTCCGTCAGCGTAAAGGGACGGATGAAGAAGCCCGTTGGGTTTACAAACAAAAGCGTTATCACTACGGATACAAAAAGCATTGTCTGACCAATGTTCAAGGCATTGTTCAAAAGGTGATAACGACTGCAGCGAACCGCAGTGACACGAAGGAGTTTATTGCGCTATTGCAGGGTGCAAACATACCTCAAGGCTCAGCCGTCTTGGCGGACAAAGGATATGCTTGCGGGGAAAATCGTTCCTACCTGCAAACCCATCACCTTCAAGACGGCATCATGCACAAGGCACAACGCAACAGGGCATTGACCGAGGAAGAGAAGCAACGAAACAAAGCAATCAGTCGGATACGGAGCACCATCGAACGCACCTTTGGCAGTATTCGCCGGTGGTTTCATGGCGGACGATGTCGATACCGGGGACTTGCCAAGACCCATACTCAAAACATTCTTGAAAGCATCGCCTTTAATTTATACAGAACCCCGGGGATAATTATGTCCTCATTTGTAGGA","10.20","14.72","41742","MAYQSKNTDEHVTFADALLSKRYRKAQNDFLNQVDRLIDWRPIRTLINKKYTKRQNAIGAPAYDVILLFKMLLLETWYNLSDCALEERINDSITFSRFLGLKMEEVSPDHSTISRFRSALTELGLMDKLLAQFNKQLSRHHISVREGVLVDASLVETPHKPNGSITIEVADDREDNRSEEEKEAEEDYQKQVVRQRKGTDEEARWVYKQKRYHYGYKKHCLTNVQGIVQKVITTAANRSDTKEFIALLQGANIPQGSAVLADKGYACGENRSYLQTHHLQDGIMHKAQRNRALTEEEKQRNKAISRIRSTIERTFGSIRRWFHGGRCRYRGLAKTHTQNILESIAFNLYRTPGIIMSSFVG","1258972 1257890","Member of the IS5 family of elements. A full-length ISPg1 element.TIGR ID: PG1177","ISPg1 transposase (IS1106-related) transposase","Cytoplasm","PG1050 is equvalent to the previously sequenced AJ130872 in GenBANK. See also AB015879. Residues 31-350 are 34% similar to the IS1106 transposase of N.meningitidis (AE002488). ","
InterPro
IPR002559
Domain
Transposase, IS4-like
PF01609\"[147-348]TTransposase_11


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 157-302 are 87% similar to a (TRANSPOSASE PLASMID PROTEIN ELEMENT) protein domain (PD004652) which is seen in Q9ZA61_PORGI.Residues 12-109 are identical to a (TRANSPOSASE PROTEIN INSERTION ELEMENT) protein domain (PD007264) which is seen in Q9ZAD0_PORGI.Residues 303-361 are identical to a (TRANSPOSASE ORF7 INSERTION SEQUENCE IS1126-LIKE GENE) protein domain (PD187845) which is seen in Q9ZA61_PORGI.Residues 110-156 are identical to a (TRANSPOSASE ORF7 INSERTION SEQUENCE IS1126-LIKE GENE) protein domain (PD187846) which is seen in Q9ZA61_PORGI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Fri Feb 16 11:13:22 MST 2001","Mon Feb 12 15:35:59 MST 2001","Mon Jun 4 11:23:54 MDT 2001","Wed Jan 3 12:02:11 2001","","Mon Feb 12 15:35:59 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1050 is identical to PG1267, PG0169, PG1662, PG1062, PG0740, PG0918, PG1422, PG0499, and PG1099, all ISPg1 transposases. PG1050 is essentially identical to PG0420, PG1184, PG1087, PG0763, PG1755, PG0686, PG1798, PG0756, PG1919, PG1230, PG0044, and PG0689, most of which are ISPg1 transposase fragments. Similarities also exist to PG1215, PG1665, PG0839, PG1895, PG0732, PG0842, PG1159, PG1607, PG0884, PG0731, PG0883, PG1608, PG1231, and PG0730, all ISPg1 fragments.","Mon Jun 4 11:02:50 MDT 2001","Fri Feb 16 11:13:22 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 147 to 348 (E-value = 2.2e-40) place PG1050 in the Transposase_11 family which is described as Transposase DDE domain (PF01609)","Mon Jun 4 11:02:50 MDT 2001","34540899","","Hanley,S.A., Aduse-Opoku,J. and Curtis,M.A.A 55-kilodalton immunodominant antigen of Porphyromonas gingivalisW50 has arisen via horizontal gene transferInfect. Immun. 67 (3), 1157-1171 (1999)Maley,J. and Roberts,I.S.Characterisation of IS1126 from Porphyromonas gingivalis W83: a new member of the IS4 family of insertion sequence elementsMicrobiol. Lett. 123 (1-2), 219-224 (1994)Shibata,Y., Hayakawa,M., Takiguchi,H., Shiroza,T. and Abiko,Y.Determination and characterization of the hemagglutinin-associatedshort motifs found in Porphyromonas gingivalis multiple geneproducts. J. Biol. Chem. 274 (8), 5012-5020 (1999)","Knight,A.I., Ni,H., Cartwright,K.A. and McFadden,J.J.Identification and characterization of a novel insertion sequence, IS1106, downstream of the porA gene in B15 Neisseria meningitidis.Mol. Microbiol. 6 (11), 1565-1573 (1992)","Mon Feb 12 15:35:59 MST 2001","Mon Feb 12 15:35:59 MST 2001","1","","","PG1177" "PG1051","1260430","1259156","1275","ATGGAAGTGAAGAAAAACACAGTGGTGCTACGCCTTCTGATTTGGTTCGTGGCCATTCTTCTCTTCCACTCCTCACGGCTGTGGGGACAGGAAGGGGAGGGGAGTGCCCGATACAGATTCAAAGGATTCGTGGATACCTACCATGCCGTACGCAGCTCTTCTCCTTTTGATTTCATGAGCTCGCGTACGAGAGTGAGAGGTGAGCTGGAGAGGTCGTTCGGTAATTCGAAAGTAGCCGTATCGGTCAATGCCACCTACAATGCTCTACTGAAAGACGAGACCGGCTTACGTTTACGTGAAGCCTTCTTCGAGCATCAGGAAGAGCATTGGGGGTTGCGCCTCGGACGACAGATTGTCATTTGGGGGGCTGCCGACGGTGTGCGCATCACGGATCTGATCTCCCCGATGGATATGACCGAGTTTCTGGCACAGGATTACGATGATATTCGTATGCCGGTCAATGCATTGCGTTTCTCTGTCTTCAACGAATCGATGAAAGTGGAAGTCGTGGTACTGCCTGTATTCGAGGGGTACCGTCTGCCTGTGGATCCTCGCAATCCTTGGAATATCTTCTCCCTTTCGCCCATTGCTCAGGGGATGAATATCGTCTGGAAAGAAGAAGCCGGCAAACCGGCCTTCAAGGTTGCCAATATCGAGTACGGTGCGCGATGGAGCACTACGCTCTCCGGTATCGACTTCGCTTTGGCTGCATTGCATACATGGAACAAGATGCCCGTCATCGAAGTACAGGGCATTGTGCCGACGGAAATCATCGTTAGCCCTCGCTATTATCGTATGGGATTTGTCGGCGGCGACCTCTCCGTACCCGTCGGACAGTTTGTTTTCAGGGGAGAGGCTGCGTTCAATATCGACAAACACTTCACCTATAAGAGTCATGCCGAGCAAGAGGGTTTCCAAACAATCAATTGGTTGGCCGGAGCCGATTGGTATGCTCCCGGTGAATGGATGATCTCAGGACAATTCTCAATGGAAAGCATATTCAGGTATAGGGATTTCATCTCCCAAAGACAACATTCTACCCTGATTACTCTCAATGTTTCCAAGAAATTCTTCGGCAGTACACTCCAACTTTCGGACTTCACCTACTACGACCTTACGGGCAAAGGATGGTTCAGTCGCTTTGCAGCTGACTATGCCTTGAACGATCAGATACATCTGATGGCCGGATATGACTGGTTCAGTAGTAAGGGCAGCGGTATATTCGATCGCTACAAAGACAATTCCGAACTCTGGTTCAAAGCCCGCTACAGCTTC","7.40","1.19","48855","MEVKKNTVVLRLLIWFVAILLFHSSRLWGQEGEGSARYRFKGFVDTYHAVRSSSPFDFMSSRTRVRGELERSFGNSKVAVSVNATYNALLKDETGLRLREAFFEHQEEHWGLRLGRQIVIWGAADGVRITDLISPMDMTEFLAQDYDDIRMPVNALRFSVFNESMKVEVVVLPVFEGYRLPVDPRNPWNIFSLSPIAQGMNIVWKEEAGKPAFKVANIEYGARWSTTLSGIDFALAALHTWNKMPVIEVQGIVPTEIIVSPRYYRMGFVGGDLSVPVGQFVFRGEAAFNIDKHFTYKSHAEQEGFQTINWLAGADWYAPGEWMISGQFSMESIFRYRDFISQRQHSTLITLNVSKKFFGSTLQLSDFTYYDLTGKGWFSRFAADYALNDQIHLMAGYDWFSSKGSGIFDRYKDNSELWFKARYSF","1260430 1259156","TIGR ID: PG1178","hypothetical protein","Cytoplasm, Outer membrane, Inner membrane","No hits found in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-29]?signal-peptide
tmhmm\"[9-29]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Feb 13 16:43:05 MST 2001","Tue Feb 13 16:43:05 MST 2001","Tue Feb 13 16:43:05 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 13 16:43:05 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540900","","","","","","1","","","PG1178" "PG1052","1261225","1260437","789","ATGAAACGATTGGCAAAGACCACCCTCATGACAGCCATGGTAGCAATGGTCTCTTTCAGCATCTACGCCCAGACAGGGCGCGACATAGCACAGCGCGTAAAAGACCGCCCCGACGGTGATACGCGTCGCTCCGAACTCACTATGAAGCTCATTAATAAACGAGGAGCCGTACGTGAGCGCAAACTCATTTCCTACTCCATTGACATGGGTAAGGATAAGAAAGACAAGAAGACTATTATGTTTTTCCTCTATCCGGGCGATGTCAAAGGCACCGGTTTCCTCACATGGGATTATGATCAGATCGGTAAGGATGATGACAAATGGCTCTACCTGCCTGCTATGAAGAAGACCCGTCGCATCAGTGGAGCATCGGCCAAGAAAGACTACTTCATGGGCAGCGACTTCACCTATGATGACATGGGCAGCCGCAATGTGGACGAGGATACGCACAAGCTCCTCGGTGAAGAGACTTTCGATGGGCATAAATGCTGGAAGCTGGAGTCTACCTCCAAAGATCAGCGCGATGTCTTTTCCAAGAAAATCGCTTGGATCAGGCAGGACTGCCTGATACCTGTCAGAGTGGAATACTATGACAGGATGAACCGCTTGCATCGTCTTTTGGAGCTGTCTGATATTGCCCAAGTAGATGGCTTCTGGATGGCGCAAAAGATGAATATGTCCAATGTGCAGACGGGGCATCGGACTGTACTGGAGATTAAGAAACCGGAGTTTAACCGTCCGATCGACGAATCGAAGTTCACTGTTACTTCTCTCGAGAAAGGTTCTCTC","10.20","10.88","30607","MKRLAKTTLMTAMVAMVSFSIYAQTGRDIAQRVKDRPDGDTRRSELTMKLINKRGAVRERKLISYSIDMGKDKKDKKTIMFFLYPGDVKGTGFLTWDYDQIGKDDDKWLYLPAMKKTRRISGASAKKDYFMGSDFTYDDMGSRNVDEDTHKLLGEETFDGHKCWKLESTSKDQRDVFSKKIAWIRQDCLIPVRVEYYDRMNRLHRLLELSDIAQVDGFWMAQKMNMSNVQTGHRTVLEIKKPEFNRPIDESKFTVTSLEKGSL","1261225 1260437","TIGR ID: PG1179","conserved hypothetical protein","Periplasm, Cytoplasm","One significant hit in gapped BLAST; e.g. residues 1-254 are 27% similar to pir||D71280 hypothetical protein of Treponema pallidum subsp. pallidum.","
noIPR
unintegrated
unintegrated
signalp\"[1-23]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 1-254 are 27% similar to a (HYPOTHETICAL 29.0 KD PROTEIN) protein domain (PD181224) which is seen in O83768_TREPA.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Feb 13 16:49:34 MST 2001","Tue Feb 13 16:49:34 MST 2001","Tue Feb 13 16:49:34 MST 2001","","Tue Feb 13 16:49:34 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 13 16:49:34 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540901","","","","","","1","","","PG1179" "PG1053","1263708","1261306","2403","ATGAAAATAGAACGCATTAACAGGTGGTTTCGCCATCGTGGCGAATGGATTATCCGCAAGCGTTGGATTGTATTGGGAGGTTTTTTCTTTTTTCTCCTTCTTGGATTCAATGGATTGCGTTTCCTTAGTATCAAAACCTCTTGGGAGGACTATTTTCTCGAGGACGATCCTATGATCATCAAGACGGAGGAGTTCAAATCCGTTTTCGGCAATGATAACTATGCTGCTGTATTGACCGACTGTGACAATACCTTCACGAAAGAAAATCTGGAGCTGATCCGTCGTCTTTCCAACGAGATGCTCGACAGTATTTCCTATGCCGAAAAGATTACTTCACTTACGGACATAGAGTTTATGATCGGAAATGAGGAGGGGATGGCCATCGAGCAGATCGTACCGGAAGAGATTCCTTCCGATTCAGCCGGATTGGCGGAGATCCGGCGCAAGGCTTTTCTCAAACCTTATATCGCCGATCGTCTGGTGTCCAAGGATGGAACCCTTACATGGATACTCTTGAAGCTGAATCCCTTCCCGAGCGATTCTGTTTGGAACAAAGGGAAAGGTGCCGTTGCTCCTGAAATGGTGGTAGGACGCGAATTGGAACACATCATCCGTAAGCCGGAGTATGCCGCACTGCATCCCAAAGGAGCCGGTATGCCCTATATGACGGATCGGAAGATGGCTTGGGTAAACAGAGAGTTACCCATGGTGATGGGCATTGCCATTTTGTTGGCCATTATTGTGCTGGCAATATCAACCCGTTCTTTCCGCGGTGTGGTGGTACCCATCGTCACGGCGTTGTCCTCTATCGTCATGGCATATGGCCTGACGGGATATTTTCGATTGGGTATCGACAGTGGTATGATGATGATACCGATGCTCTTGGCCTTTGCTGTAACCGTGGCGTACAACATCCATATTCATTCCTACTTCCGACGGCAGATGATGATACACGGCAAGCGCAAACAGGCTGCGGTGGAGACCATTGAGGAGACCGGNTGGCCGGTGCTATTCAGTGCTCTCACCACTTTTGTTGCTTTGCTTTCTTTTCTGGCTATTCCCGTCGTACCGATGCACTTTATCGGTATCGCCACTTCTGCCAGTGTCCTCTTCTCCTTTATGATCGCCATTACGGTGATGCCGACTACCTTGAGTTTCGGCAAAGACCATCAGCCGAAAGCATCAGTGCGAAAAGAAGGAAAGCATCGGCTGGATCGATGGCTCGAAGCCTTCGGTGCCTGGGTGTTGGATCATGAGAAGTCTGTCTGGGGTGCTTTTATCCTTATGACAGTGGTGATGCTCTTTGGATTCTTGAAAATGGAGACGGCATTCGACATTGAAAGAACAATGGGGCGACGGATAGAATACGTCAGCAATATCCTTGCCGTGAGCGAAAGCGAATTGGGCTCTCTTTATTCCTATGATATTATGATCGATTTGGGAGAGGAGGGAAAGGCCAAGACCCCCGAAGCACTTCGTGCTCTCGACAGCATCGCTCGCCATGCAGAGGCATATTCCCTTACCAAGCGTACCACTTCGATATTGAATATCCTCAAGGATCTGAACCAGACCTTGCACGATGGGGATCAGGCATACTATAGCATTCCCGGCGATGCGGAGGAGGTGGCACAGCAGCTCCTCCTATATGAGAATGCAGGGGGGAGTGAGGCCGAAAGCTGGATAGACTACGAATACAGACGGCTGCGCCTGAAAGTGGAAATGACCTCTTACAATTCGGGTGAGGCCGAGTGGGAATTGCAGGATATTACCGACTATGCCCGTAAGCTTTTCCCCGAAGCAGAGATTACACCGGTGGGCAGTCTGCCACAGTTCACCACGATGATGCAGTATGTGGTGCGTGGACAGATTTCCTCTTTCCTCCTTTCTCTGCTTGTCATCGGACTGCTGATGATGGTCGTTTTCGGTAGTGTCCGTGTAGGGCTGATAGGCCTTATCCCTAATATCATGCCTGCCATTGTAGTGGGAGGTCTGATGGGTATTCTGGACTATCCGCTCGATATGATGACTGCTACGATCATGCCTATGATATTGGGTTTGGCTGTGGACGATACCATTCACTTCTTCAATCATGGGCACTTGGAGTTCGACCGCCAGCGTAATTACCGTGGAGCCGTCCTCAAGTCGTTCCGGATCGTTGGGACACCTATCGTGCTCACGAGTCTGATCGTCTCGGCCAACTTTGCTGCTTACACCATTTCCAAGGGGCACTCTTTCGTACACATGGGTATTCTCTCGGTTGCGGGGATGTTCACAGCCCTTTTGGCAGACCTCTGCATCACGCCACTCCTGTTCCGACGATTCCGAATATTCGGGAAAGAAGATTTTGCCGTATCGGTTTCAAAAAAGACGGCAGACCAATCTCTCCCGAACACGGTTACCGAT","6.50","-4.93","199797","MKIERINRWFRHRGEWIIRKRWIVLGGFFFFLLLGFNGLRFLSIKTSWEDYFLEDDPMIIKTEEFKSVFGNDNYAAVLTDCDNTFTKENLELIRRLSNEMLDSISYAEKITSLTDIEFMIGNEEGMAIEQIVPEEIPSDSAGLAEIRRKAFLKPYIADRLVSKDGTLTWILLKLNPFPSDSVWNKGKGAVAPEMVVGRELEHIIRKPEYAALHPKGAGMPYMTDRKMAWVNRELPMVMGIAILLAIIVLAISTRSFRGVVVPIVTALSSIVMAYGLTGYFRLGIDSGMMMIPMLLAFAVTVAYNIHIHSYFRRQMMIHGKRKQAAVETIEETGWPVLFSALTTFVALLSFLAIPVVPMHFIGIATSASVLFSFMIAITVMPTTLSFGKDHQPKASVRKEGKHRLDRWLEAFGAWVLDHEKSVWGAFILMTVVMLFGFLKMETAFDIERTMGRRIEYVSNILAVSESELGSLYSYDIMIDLGEEGKAKTPEALRALDSIARHAEAYSLTKRTTSILNILKDLNQTLHDGDQAYYSIPGDAEEVAQQLLLYENAGGSEAESWIDYEYRRLRLKVEMTSYNSGEAEWELQDITDYARKLFPEAEITPVGSLPQFTTMMQYVVRGQISSFLLSLLVIGLLMMVVFGSVRVGLIGLIPNIMPAIVVGGLMGILDYPLDMMTATIMPMILGLAVDDTIHFFNHGHLEFDRQRNYRGAVLKSFRIVGTPIVLTSLIVSANFAAYTISKGHSFVHMGILSVAGMFTALLADLCITPLLFRRFRIFGKEDFAVSVSKKTADQSLPNTVTD","1263708 1261306","TIGR ID: PG1180","conserved hypothetical protein (probable membrane transport protein)","Inner membrane, Cytoplasm","A few significant hits and numerous weak hits in gapped BLAST; e.g. residues 58-758 are 20% similar to fragment (residues 41-734) of gb|AAB91494.1| conserved hypothetical integral membrane protein of Borrelia burgdorferi, residues 43-756 are 20% similar to emb|CAB73800.1| putative integral membrane protein of Campylobacter jejuni, residues 82-544 are 21% similar to fragment (residues 95-552) of gb|AAC65756.1| antibiotic transport protein, putative of Treponema pallidum.","
InterPro
IPR000577
Family
Carbohydrate kinase, FGGY
PS00933\"[221-233]?FGGY_KINASES_1
InterPro
IPR000731
Domain
Sterol-sensing 5TM box
PS50156\"[263-386]TSSD
noIPR
unintegrated
unintegrated
SSF82866\"[152-394]T\"[550-781]TSSF82866


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 643-775 are 30% similar to a (PROTEIN PATCHED TRANSMEMBRANE RECEPTOR) protein domain (PD002160) which is seen in O51268_BORBU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","Tue Feb 6 13:31:53 MST 2001","Tue Feb 6 13:31:53 MST 2001","","","Wed Feb 14 08:29:18 MST 2001","Wed Feb 14 08:29:18 MST 2001","Tue Feb 6 13:31:53 MST 2001","","Wed Feb 14 08:29:18 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Feb 14 08:29:18 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540902","","","","","","1","","","PG1180" "PG1054","1264348","1263752","597","ATGGATGCTCGTGCCAGAATCTTGCGAGCTGCACGAGAGGAATTTATGGTCAATGGTTTCCGAGATGCTTCTCTCCGAACCATCGCTCGCGAATCGGGAGTAGCCGTGAGCAATATATACAACTACTTCGAGCACAAGGACAGCCTCTTCAGGGCTGTGCTTCAACCTCTCTTGGATGAATTCGGGCGGATAATGGAAGGTCACAACAGTGAGCACAATATGGACGTCTATATGCTCATGCCTGAAAAGTTCCGCGAAGAGACGACAAAGGAGTTCATGCAGTTTGCCCGGCAGTTTCGGGCTGAGCTGAAGCTCCTGCTCTTGCAGTCCGGGGGCTCGTCGTTGGAGCACTTCAAGGATCAGGTCATCAGCAGACAAATACGATCCGGCGAAAACTATCTGCAGCTCTTCAAAGAAAAATACCCACATGCCAACACCGAGGTAAGCCCCTTCTTTATCCGATTGGGGGCCGCGTGGTGGGTCAATGTTTTCATCGAGATAATAACAAATGAGATTCATACCGAGGAGGAGATAAATCAAGGTCTGTCCGAATATATCGCTTTCGGTACGGCCGGCTGGCGAGCACTGATGCAGATA","6.00","-3.54","23262","MDARARILRAAREEFMVNGFRDASLRTIARESGVAVSNIYNYFEHKDSLFRAVLQPLLDEFGRIMEGHNSEHNMDVYMLMPEKFREETTKEFMQFARQFRAELKLLLLQSGGSSLEHFKDQVISRQIRSGENYLQLFKEKYPHANTEVSPFFIRLGAAWWVNVFIEIITNEIHTEEEINQGLSEYIAFGTAGWRALMQI","1264561 1263752","TIGR ID: PG1181","hypothetical protein","Cytoplasm","Weak hits in gapped BLAST to transcriptional regulator sequences,e.g.residues 4-55 are 42% similar to residues 34-85,a transcriptional regulator from Mesorhizobium loti (gi|13474033|).","
InterPro
IPR001647
Domain
Bacterial regulatory protein, TetR
PR00455\"[7-20]T\"[28-51]THTHTETR
PF00440\"[7-53]TTetR_N
PS50977\"[1-61]THTH_TETR_2
InterPro
IPR009057
Domain
Homeodomain-like
SSF46689\"[1-72]THomeodomain_like
InterPro
IPR012287
Domain
Homeodomain-related
G3DSA:1.10.10.60\"[2-53]THomeodomain-rel


","BeTs to 8 clades of COG1309COG name: Transcriptional regulators, AcrR familyFunctional Class: KThe phylogenetic pattern of COG1309 is a-T--QVCEBRH---------Number of proteins in this genome belonging to this COG is 3","***** IPB001647 (Bacterial regulatory proteins, TetR family) with a combined E-value of 3e-11. IPB001647 11-50","No significant hit to the ProDom database.","","Tue Jun 12 14:24:28 MDT 2001","","Tue Jun 12 14:24:28 MDT 2001","Tue Jun 12 14:24:28 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Tue Jun 12 14:24:28 MDT 2001","Tue Jun 12 14:24:28 MDT 2001","","Tue Jun 12 15:16:51 MDT 2001","Wed Feb 14 08:35:50 MST 2001","Tue Jun 12 15:16:17 MDT 2001","Wed Feb 14 08:35:50 MST 2001","Tue Jun 19 14:00:36 MDT 2001","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Feb 14 08:35:50 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 7 to 53 (E-value = 2.2e-13) place PG1054 in the TetR_N family which is described as Bacterial regulatory proteins, tetR family (PF00440)","Tue Jun 19 14:00:36 MDT 2001","34540903","","","","","","1","","","PG1181" "PG1055","1266963","1265431","1533","GTGCACTTTTTCGATTCGATGGATATATCCCGCCTGTGGGATATATTACAGTATGATGCTTCTGCCCCCATGATTTTTTCGAGTGGGACGTTCTTCATCCTCTTTCTTTTGTTCCTTCCGCTATACATCCTGCTACGCCGGCAAACCGGACTGCGTATTGTATACGTATCTCTCTTTTCTCTTTATTTCTACTATAAGAGCAGCGGTCTTTTCGTCCTGCTTCTTTTGGCTGCTGCTACGAGCGACTTCCTCATCGGTCGGCTTTTGTCCCGTCAGCAGATCCAAGTACGGCGCAAGCTCCTTGTGGCACTCAGTATGTGTATCAATTTGGGAGTATTGTCCTATTTCAAATACTTCAATTTCCTCGGTGAGATGCTTTTCTCTCTCATTCAGGAAATCGGTCTCGTGACCAATCGCCCGGAGTGGATCATGACCGATTGGGAGCATTGGGACATTATACTGCCTGTGGGGATCTCGTTCTATACTTTTCAGACGATGAGTTACATTATCGACATTTATCGAGGTCAGGTGCAGCCTCTAAAACGTTGGATAGATTACGTCTTCTATGTCTCTTTCTTTCCCCAGCTGGTAGCCGGCCCCATCGTCCGCGCCCGAGATTTCATTCCGCAGATATACCGCCGTCCGGTGTTGGAAGGGAGGGAATATGCCGAAGCCCTGATGTTGATAATGGGAGGTCTCTTCAAGAAAGCGATCATATCGGACTATATCAGCCTGAACTTTGTGGATCGCGTGTTCGATGCTCCAACGCTTTACACCGGATTGGAGAACCTTATGGGGGTGTATGGCTACGCCCTACAGATCTATTGCGACTTTTCCGGTTATTCCGACATGGCTATCGGTATAGCTCTGGTGCTCGGCTTCCGCTTCAATATCAATTTCGATTCACCTTATCAGTCGGCCAATATCACCGAGTTCTGGCGCAGGTGGCATATCTCTCTTTCGTCATGGCTCAGGGATTACCTGTATATACCGTTGGGGGGGAATAGGAAAGGGAAAATCCGCACCTATATCAATCTTCTGCTGACGATGCTCCTCGGTGGCCTTTGGCATGGTGCCGCCTTGCGATTTATTTTGTGGGGTGCAATTCATGGAGTGGCACTGGCCGTACACAAACTCTGGTGCGAGATCTTTCCGTCGAATCGGGCTATGTCCACGGATATGCCTTTTTGGCGCAGATGGCTCGGACGGATCATTACTTTCCATCTCGTCTGTTTGGGTTGGATCTTCTTCCGATCCGATTCGATGGCGGTGGCCGGACAGGTTCTTGGACAAATATTCAACGACTTCCATCCCGAAGTTTTCTTCCAATTCATTGCCGGCTACAAGGGCGTTGTCGTACTGATGGTCATAGGTTACCTGTTGCATTTTGTCGGTAAGGGTAAGCGAAACAGGGCGCAATCCATGCTTGAGCGTGCTCCGTTCGTCTTGCAAACTCTGATGCTCGTTCTCCTGATCTTCATCATCATTCAGGTACGCAGCTCGGAAATACAGCCCTTCATATATTTCCAGTTC","10.20","13.98","59543","VHFFDSMDISRLWDILQYDASAPMIFSSGTFFILFLLFLPLYILLRRQTGLRIVYVSLFSLYFYYKSSGLFVLLLLAAATSDFLIGRLLSRQQIQVRRKLLVALSMCINLGVLSYFKYFNFLGEMLFSLIQEIGLVTNRPEWIMTDWEHWDIILPVGISFYTFQTMSYIIDIYRGQVQPLKRWIDYVFYVSFFPQLVAGPIVRARDFIPQIYRRPVLEGREYAEALMLIMGGLFKKAIISDYISLNFVDRVFDAPTLYTGLENLMGVYGYALQIYCDFSGYSDMAIGIALVLGFRFNINFDSPYQSANITEFWRRWHISLSSWLRDYLYIPLGGNRKGKIRTYINLLLTMLLGGLWHGAALRFILWGAIHGVALAVHKLWCEIFPSNRAMSTDMPFWRRWLGRIITFHLVCLGWIFFRSDSMAVAGQVLGQIFNDFHPEVFFQFIAGYKGVVVLMVIGYLLHFVGKGKRNRAQSMLERAPFVLQTLMLVLLIFIIIQVRSSEIQPFIYFQF","1266963 1265431","TIGR ID: PG1184","probable alginate O-acetylation protein","Inner membrane, Cytoplasm","Numerous significant hits to alginate O-acetylation protein in gapped BLAST; e.g. residues 73-434 are 40% similar to gb|AAG06936.1|AE004775_7 alginate o-acetyltransferase AlgI of Pseudomonas aeruginosa, residues 73-434 are 40% similar to gb|AAB09781.1| AlgI of Pseudomonas aeruginosa, residues 83-511 are 33% similar to gb|AAF41650.1| alginate O-acetylation protein AlgI, putative of Neisseria meningitidis MC58.This sequence is similar to BT2681.","
InterPro
IPR004299
Family
Membrane bound O-acyl transferase, MBOAT
PF03062\"[139-417]TMBOAT
InterPro
IPR006741
Family
Accessory gene regulator B
SM00793\"[2-144]Tno description
noIPR
unintegrated
unintegrated
PTHR13285\"[312-366]TACYLTRANSFERASE
PTHR13285:SF2\"[312-366]TMEMBRANE-BOUND ACYLTRANSFERASE-RELATED
signalp\"[1-51]?signal-peptide
tmhmm\"[19-39]?\"[49-64]?\"[70-90]?\"[100-118]?\"[152-172]?\"[339-357]?\"[363-381]?\"[396-416]?\"[444-464]?\"[479-499]?transmembrane_regions


","BeTs to 4 clades of COG1696COG name: Predicted membrane protein involved in D-alanine exportFunctional Class: MThe phylogenetic pattern of COG1696 is ----Y----b--u----l---Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 306-378 are 57% similar to a (PROTEIN TRANSMEMBRANE ALGI MEMBRANE) protein domain (PD007034) which is seen in Q51392_PSEAE.Residues 110-304 are 41% similar to a (PROTEIN ALGI MEMBRANE DLTB) protein domain (PD014253) which is seen in Q51392_PSEAE.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Feb 14 09:10:42 MST 2001","Wed Dec 17 11:39:54 2003","Wed Feb 14 09:10:42 MST 2001","","Wed Feb 14 09:10:42 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Feb 14 09:10:42 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 139 to 419 (E-value = 2.7e-71) place PG1055 in the MBOAT family which is described as MBOAT family (PF03062)","Mon May 7 16:32:20 MDT 2001","34540904","","","","","","1","","","PG1184" "PG1056","1267845","1266988","858","TTGAAGCCATTGATTTTGAAAAAAAGTATTATGATGCCATTCGCGAATAGATTCATGCTATTACTGCTCTGCCTTACCACCGCTTTCGGGCTGTCGTTCGGACAGTCCTCGCTTTGGTACGAGCCGGAAGGATATCTCGACCAGGTATGGCAGCACATTAGAGTAGACAATTCGAACAAGAAGACGGTTACGATCCTCCATCTCGGCGATAGCCATTTGAGCGGGGGATACTTTACCCGATCCATGTCAGCCAAGTTGGCTGTCCAATACGGTGATAAAGTTCGCTTCGAGCGTATCGGCGTACCCGGTGCCAGTTATTCCACTTTCTCCCAAGACAAGTATATGCAGCAGATCAAAGCCGTAGAGCCCGATCTCGTCATCATCTCTCTGGGAACGAACGATTCGTATTGTTTTAAGTTCTCAGAAACAGAAATGTGGGGAAATATGGAGACTTTTTTCGGCATGCTGCGGCAGACATTGGAGGATGTCCCATTCGTCCTGACTACTCCGCCTCCTTCTTACCTTCGCCGGTCAGTGAAGGTAGCAGGCAAAAACCGCAAAGGAAGCAAACGGCGTAAAAATCGTTATAGAACCACTTACCACTTCAATGACAATACGGAAAAGGCATCCCGCCTGATACGATCATATACGGTGGAACATGGCATGGCTTGTTTTGACCTCTCTGCGGCTATGGGGGGAGAGGCTGAAACCCGACAATGGCTGCGTAGCGGGCTGATGCATACCGATCATATACATTATACGGTGGGTGGATATACCCGTCATGGAGGACTGGTGGCCGATGCCTTACTCGGCTCTATTGTCCGTGGCAAAATGGATAGGAGCGACCAGTCCAAACTC","10.40","14.02","32499","LKPLILKKSIMMPFANRFMLLLLCLTTAFGLSFGQSSLWYEPEGYLDQVWQHIRVDNSNKKTVTILHLGDSHLSGGYFTRSMSAKLAVQYGDKVRFERIGVPGASYSTFSQDKYMQQIKAVEPDLVIISLGTNDSYCFKFSETEMWGNMETFFGMLRQTLEDVPFVLTTPPPSYLRRSVKVAGKNRKGSKRRKNRYRTTYHFNDNTEKASRLIRSYTVEHGMACFDLSAAMGGEAETRQWLRSGLMHTDHIHYTVGGYTRHGGLVADALLGSIVRGKMDRSDQSKL","1267845 1266988","TIGR ID: PG1185","conserved hypothetical protein","Outer membrane, Cytoplasm","This sequence corresponds to gi:34397220 in Genbank.Its nearest neighbor in the NR database is gi:60494828 from Bacteroides fragilis NCTC 9343.","
InterPro
IPR013831
Domain
Esterase, SGNH hydrolase-type, subgroup
G3DSA:3.40.50.1110\"[62-285]Tno description
noIPR
unintegrated
unintegrated
signalp\"[1-30]?signal-peptide
tmhmm\"[20-40]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon Mar 7 08:41:55 2005","Mon Mar 7 08:41:55 2005","Wed Feb 14 09:14:31 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Feb 14 09:14:31 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540905","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Mon Mar 7 08:41:55 2005","","1","","","PG1185" "PG1057","1269244","1267799","1446","TTGCGCACAATTTTTGATTCTTCTACAAAGAAGAGAAATCCGACACAAGATTATTCTATGGAAGGCCCGCGTAATCAAATGGCTCGTTTTTGGTTGTTGCTTGCTGCAACGGCAATTCTTTTGGGTGCTTTATTCTATCTGCCCGAGCAGATAGGGAGCTGGCAACTCAAGCCTGTGGATTTGCTGAGCGATGTGCGACAGGCAGAAACCGATTCCACTGCGATCCTTATTGCCCTGCAGCCGACTCTTCCCTCTGGGAATGCAGATAATAAAACAAAATCCAATAAGCGCAGAAGTGCTATTTATAGCCAATTGCTTGAGCAAAATACAGTATCTGATTCGACCTTTATCCCTATAGAGGATTTTAGCTCTACGCGCACGGCACTCAAGCGTTTCTATACGAGTATAGCCGAGCGGTCAACTCTCGGCAGGCCCATTCGGATAGCCGTATTGGGTGACTCCTTCATCGAAGGCGATATTTTCACCGATGCTCTTCGTGCTGCTCTGCAGAAGCGTTTCGGTGGCAACGGGGNAGGATGGATGCCTATTACCTCCGAGGTCGCAGGCTTTAGGGGGAGTATTCGTCATGAGTTCAGGCTGTGGGAAGATCATGCCATGCTCCATTCCAAGAAAGGTCATTATCCCTTTACCGGCCATTTCTATCGCCCTAAGCAGGGAGCATGGGTGCATTATACGATGCCCACAGGAGAGCCGAACTTCGGCCATGCGATACTGTATTATCAAGCTGCGAACGAGGCCTCGGTTCGCATAGAGACTCCGGATACAACGCTCACTGTCATTCTTCCTCCGACGGAAACTGTGGGGCAATACACTTTGAGCAGCGATCCGCAGCGAAGTATCAAATGCAGTTTTCTTTCGGGGGGACAAGATTTTGTATCTTTCGGCGTTGCTTTGGAGGATGTTCAAGGTATTTCGGTCGATAATATGTCCATTCGTGGCAATTCGGGCATTCTTCTCAAATCCATCGATCGGGAAGTAAGCCATGCCTTTGCCTCTTTGCGGAATTATGATCTGATAATCCTGCAATACGGACTCAATGTTGCATCGAATAAGCAAAAAGACTATAGCAATTATGCCAAGCAAATGGGGGGTGTGATCGAAACCCTCCGCAACATTTGTCCCGATTCCGATATTCTACTGATGAGCGTGTCCGACAGGGCACAGCGCACAGCAAACGGAATACGGACGATGGCCGGCATTATTGCTCTTCATGCTGCGCAGCAGGCTCTTGCCCAACAGCATGGTATCGCCTTTTGGAGCACGCTTAGGGCTATGCATGCCCTCGGAGGGATCTCCAGAATGGCTGATAAGGGCTGGGCGGCCAGAGATTATACGCATTTGGCGCACCGAGGTGGACGGGAGCTGGCCAAGAAAATGATTGAAGCCATTGATTTTGAAAAAAAGTATTATGATGCCATTCGCGAA","9.80","9.06","119857","LRTIFDSSTKKRNPTQDYSMEGPRNQMARFWLLLAATAILLGALFYLPEQIGSWQLKPVDLLSDVRQAETDSTAILIALQPTLPSGNADNKTKSNKRRSAIYSQLLEQNTVSDSTFIPIEDFSSTRTALKRFYTSIAERSTLGRPIRIAVLGDSFIEGDIFTDALRAALQKRFGGNGXGWMPITSEVAGFRGSIRHEFRLWEDHAMLHSKKGHYPFTGHFYRPKQGAWVHYTMPTGEPNFGHAILYYQAANEASVRIETPDTTLTVILPPTETVGQYTLSSDPQRSIKCSFLSGGQDFVSFGVALEDVQGISVDNMSIRGNSGILLKSIDREVSHAFASLRNYDLIILQYGLNVASNKQKDYSNYAKQMGGVIETLRNICPDSDILLMSVSDRAQRTANGIRTMAGIIALHAAQQALAQQHGIAFWSTLRAMHALGGISRMADKGWAARDYTHLAHRGGRELAKKMIEAIDFEKKYYDAIRE","1269244 1267799","TIGR ID: PG1186","conserved hypothetical protein; possible periplasmic protein","Outer membrane, Cytoplasm","This sequence corresponds to gi:34397221 in Genbank.Its nearest neighbor in the NR database is gi:53715422 from Bacteroides fragilis YCH46.","
noIPR
unintegrated
unintegrated
signalp\"[1-42]?signal-peptide
tmhmm\"[30-48]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","Tue Feb 6 13:32:55 MST 2001","Tue Feb 6 13:32:55 MST 2001","","","Mon Mar 7 08:46:55 2005","Mon Mar 7 08:46:55 2005","Tue Feb 6 13:32:55 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Feb 14 09:22:22 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540906","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Mon Mar 7 08:47:53 2005","","1","","","PG1186" "PG1058","1269925","1269665","261","TTGAATGAGTCGTCGGTCATGTATTCAGTCACTATCGGAAAATCTCTTCATGGTCTCGGATCCACACGGATAGAGAACAAAGAAGTTTATCCTCTCAACTTTTTACTCCTGATCGTTTTCCTCTCTACGCTCTCAGGTGATACCTCTTGGTACGAGATTGAAGATTATGCAGAGGAATACGAAGAAGTGTTGAAAAGCCGGTACGAAACACTTACGATCGTAGGCGTACGATGCCTTCCTGCACGGTGCAGGAGACCGGCG","4.90","-2.86","9918","LNESSVMYSVTIGKSLHGLGSTRIENKEVYPLNFLLLIVFLSTLSGDTSWYEIEDYAEEYEEVLKSRYETLTIVGVRCLPARCRRPA","1269925 1269665","Member of IS5 family of elements. Corresponds to the N-terminal domains of fullength ISPg2 sequences such as PG1522.TIGR ID: PG1187","ISPg2 fragment (PGIS2-related fragment)","Cytoplasm","PG1058 is a fragment similar to gb|AAC45368.1, a previously sequenced ISPg2 sequence. Residues 14-72 are 54% similar to residues 7-65 of gb|AAC45368.1.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 14-72 are 54% similar to a (PUTATIVE TRANSPOSASE) protein domain (PD103322) which is seen in P95492_PORGI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Fri Feb 16 16:12:38 MST 2001","Fri Feb 16 16:12:38 MST 2001","Thu Feb 8 12:57:50 MST 2001","Thu Feb 8 12:57:50 MST 2001","","Fri Feb 16 16:12:38 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1058 is similar to the N-terminal domains of full-length ISPg2 sequences such as PG1522. Similarities also to the N-terminal domains of PG1905, PG1185, PG0775, PG0249, and PG1855, all ISPg2-related sequences.","Mon Jun 4 11:08:05 MDT 2001","Fri Feb 16 16:12:38 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jun 4 11:04:04 MDT 2001","","","","","","","1","","11","PG1187" "PG1058.1","1270160","1269921","240","GTGAGAGGGTTCGTAGGGTTTTCCATACGTTACTGCTTTAATGTTCACTTCCACCGAAAACCTCCTGTCCGGAGAGATACAATTCGGTACTTTTCCAATACAACGGAAGGTAATTATCAGATAATGATTCCGTTTTCAAAAGACCAAATTAAAGAAAAAATATTGACAGACCATAATTTGGAAGGTGTTTGCAGGGCAAGGCATTCAAAACAGCATTCTATAAGTTTTATAGTCGTTGAA","","","9480","VRGFVGFSIRYCFNVHFHRKPPVRRDTIRYFSNTTEGNYQIMIPFSKDQIKEKILTDHNLEGVCRARHSKQHSISFIVVE","","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No hits found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Wed Feb 14 09:27:03 MST 2001","Wed Feb 14 09:27:03 MST 2001","Wed Feb 14 09:27:03 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","11","" "PG1059","1270135","1272012","1878","ATGGAAAACCCTACGAACCCTCTCACGGATTCAATGGCACAGCCTGAATCCGAAGAATTGAAACCTACGACAACAGACCGGTTGCCGGAGGCTCAAAGCCTGGAAGTGGCAGATCCGACTCCTTTGGAAAACGAATCCAAATCAGCCGAAGAAAGTAAAACAAGTGTAAACGCCCGTTTGGCGGACATGACCGAGCTCGAGCTACTTGACAGCTTGGCCATATTACTCCAAGGAGAAGAGCTACCTCGCCGACAGGAAGTAGAGGCCTACAAAAGTGCTTTCTATAAGAAAAAGCAGGCTCGTACAGGAGAATCGGCCGACAGTACAACTTCGTCTATGGCCGAACCGGACTTGAACGAAGAGCGTCTGAAAGACTTGCTACAGCGTTTTCGCGAACTGAACCAAACACGAATAGAGTCGATGCAAAAGGAACGTGAGAGCAATTTGGCTCAGAAAGAAGCCCTCTTGCAACGACTGAGGGATCTTCTCGGCAGCAACGAGGAGTTCGGCAAGATTAGCCCTGTTTTTCATGAGATCCGCAAGTCATGGAAGGAGACCGGTCCCGTACCGGAAGCAAATGCTACGGATATAACCAAAGAATATAATAGTCTGGTAGAGCAGTTCTATGACCTGAAGCAGATCAATGATGAATTCCGCGCCTACGATTTCAAAAAGAATCTGGAGGCTAAGGAGGAATTGATCCATCAGGCCGAAGTGCTGACTGAGAATGCGGATGTCATCCATTCTTTCAGGGTACTGCAAGAGCTGCATCATCAATGGCGCGAATTGGGACCGGTAGCTCGCGAACTCCGCGAAGAGGTGTGGGCGAGATTCAAGGCTGCTTCTACTGCTATCAATAAGAAGTATCAGGAACACTTCGAAAAGCAAAAGATGCGCGAGCAGGAGAATCTGGCTGCGAAAACATTGCTTTGTGAAGAAATGGAAGCGATAGATACCTCCGGTCTGAACTCGCTGGCCAAATGGGACGAGCAAACGAAGGCCGTACTAGAGATTCAGGCCAAGTGGAAGACTATAGGCTATGCTCGCAGAAGCGACAATGAGAAGATCTACGAGCGTTTCCGCGCAGCATGTGACGATTATTTCAATAAGAAAACAGCTTTCTTCAAAGGCAAACGTGAAGAGCTGACCGATAACTACAAGAAGAAGCTGGCCATGGTAGAAGAAGCGGAGAGCCTTCAGGAGAGTTCCGACTGGAAAGAAACCTCTACTCGCTTGGCCGAACTCCAAAAGAAATGGAAAACCATCGGAGCCGTTCCTCATCGGTATAGTGATGAGATATGGAAGCGTTTTACGACTGCATGCGATGCATTCTTCAAACGTAAAAAAGCCGAACAGGGAGATATGCGCTCCGAAGAATGCGAAAACCTGAAGAGCAAGAAAGCAATCATTGCAGAGCTTGAGACTTTGGATTCGGAAGAAGCAAGCGAGGGTATCATCGACAGGCTCAATGCTCTGGCCGGACGTTGGAATTCCATAGGCTTTGTACCGTTCAGAGAGAAGGATACTATCAACAAAGCTTACCGAAAATTGATCGATGGTCTGTACGACAAGCTGAATATCGAACGAAGCAACCGGCGCCTCGAAGGATACAATGCCTCCTTGGAACAACTGGAGGGTGGCGGCAAAGGACAGCTCTATGATGAACGTGATCGTATGACACGTATCCTCGACCGTATGCGCAACGAATTGCAGACCTATACGAACAATCTGGGTTTCCTCAATATATCCAGTAAAAGTGGGAATAGCCTGATGCGCGAAATAGAGCGCAAGAAGGAAAAGCTGGAAGAAGACATCCGTCTGATGATCGAAAAGATCAAGCTGATCGACAAGAAGGTGGAAGAGCTGAACTCTAAAGAG","5.30","-14.36","72860","MENPTNPLTDSMAQPESEELKPTTTDRLPEAQSLEVADPTPLENESKSAEESKTSVNARLADMTELELLDSLAILLQGEELPRRQEVEAYKSAFYKKKQARTGESADSTTSSMAEPDLNEERLKDLLQRFRELNQTRIESMQKERESNLAQKEALLQRLRDLLGSNEEFGKISPVFHEIRKSWKETGPVPEANATDITKEYNSLVEQFYDLKQINDEFRAYDFKKNLEAKEELIHQAEVLTENADVIHSFRVLQELHHQWRELGPVARELREEVWARFKAASTAINKKYQEHFEKQKMREQENLAAKTLLCEEMEAIDTSGLNSLAKWDEQTKAVLEIQAKWKTIGYARRSDNEKIYERFRAACDDYFNKKTAFFKGKREELTDNYKKKLAMVEEAESLQESSDWKETSTRLAELQKKWKTIGAVPHRYSDEIWKRFTTACDAFFKRKKAEQGDMRSEECENLKSKKAIIAELETLDSEEASEGIIDRLNALAGRWNSIGFVPFREKDTINKAYRKLIDGLYDKLNIERSNRRLEGYNASLEQLEGGGKGQLYDERDRMTRILDRMRNELQTYTNNLGFLNISSKSGNSLMREIERKKEKLEEDIRLMIEKIKLIDKKVEELNSKE","1270135 1272012","TIGR ID: PG1189","conserved hypothetical protein","Cytoplasm","This sequence corresponds to gi:34397222 in Genbank.Its nearest neighbor in the NR database is gi:60491697 from Bacteroides fragilis NCTC 9343.","
InterPro
IPR010978
Domain
tRNA-binding arm
SSF46589\"[551-616]TtRNA_binding_arm


","BeTs to 5 clades of COG1196COG name: Chromosome segregation ATPasesFunctional Class: DThe phylogenetic pattern of COG1196 is am-kYqvc-br---gpol---Number of proteins in this genome belonging to this COG is 4","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Feb 14 11:45:51 MST 2001","Mon Mar 7 08:54:07 2005","Wed Feb 14 11:45:51 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Mar 7 08:54:07 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540907","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Mon Mar 7 08:54:07 2005","","1","","11","PG1189" "PG1060","1272255","1273205","951","ATGAAGATAGTAATAGCGGACAGCTATGCAGCTCTACCCGGCGATTTGGACTGGAGCGGTATCGAAGAAATGGGCGAATGCGTGTTCTACGAATATACCCGTCCGGAGGATTTGACTCTGCGTGCTGTCGATGCTGAAATAGTGCTTACCAACAAGACTCCTGTGACTGCGGCCGACATGGAAAAGATGCCCCACCTACGTTACATCGGACTGATGATTACAGGCCTTAATCTTATAGATATGGATGCTGCTCGTCAGCGTGGTATCACCATAACGAACATCCCCCACTATAGCACAGAATCAGTAGCCCAAATGGCAATCTCGCATCTACTGCACATAACCATGCCGATCGGAGAACTTTCCCGGCAGGTGAAAGATGGTTGCTGGCAGAGCAATTACGAACAAATCTCTCGCAATACTTATCAGATAGAACTGAGCGGACTGACGATGGCTATCGTGGGACTTGGGGCAATAGGTACACGTGTAGCGGAAATGGCACGTGGATTCGGCATGAAGATTTTGGCACATACATCCAAATCTCCAATCGAGTTGCCTTCTTATATAGAAAAGTCCGATAGCCTGGAGAAGCTTTTCTCTCGGGCTGATGTGCTGAGTCTGCATTGCCCGCTCACAGCGCAAACCCAAAGGATGGTATCGGCTGATAGGCTGGCACTGATGAAACCGACAGCTATCCTGCTGAACATGTCCCGAGGAAGTCTGATCGATGAAAAAGCATTAGCCTCTGCCCTAAATGAAGGACGGCTCTATGCTGCAGGCTTGGACGTACTTGCGGAAGAACCTCCATGCATGGATCACCCTTTGCTTAAGGCGCGTAATTGTCACATCACGCCACATATGGGCTGGAATACGGATGCAGCGCGCTTGCGCCTTTCTCGGACGATCAAGGAGAATCTTCGGGCTTTCATTTCCGGTCACCCTGTCAATGTCGTT","6.50","-2.82","35002","MKIVIADSYAALPGDLDWSGIEEMGECVFYEYTRPEDLTLRAVDAEIVLTNKTPVTAADMEKMPHLRYIGLMITGLNLIDMDAARQRGITITNIPHYSTESVAQMAISHLLHITMPIGELSRQVKDGCWQSNYEQISRNTYQIELSGLTMAIVGLGAIGTRVAEMARGFGMKILAHTSKSPIELPSYIEKSDSLEKLFSRADVLSLHCPLTAQTQRMVSADRLALMKPTAILLNMSRGSLIDEKALASALNEGRLYAAGLDVLAEEPPCMDHPLLKARNCHITPHMGWNTDAARLRLSRTIKENLRAFISGHPVNVV","1272255 1273205","TIGR ID: PG1190","dehydrogenase","Cytoplasm","Numerous significant hits to dehydrogenase proteins in gapped BLAST; e.g. residues 8-317 are 33% similar to gb|AAF95646.1| 2-hydroxyacid dehydrogenase family protein of Vibrio cholerae, residues 30-317 are 35% similar to sp|Q59516|DHGY_METEX glycerate dehydrogenase (NADH-dependent hydroxypyruvate reductase) (HPR) (GDH) (hydroxypyruvate dehydrogenase) (glyoxylate reductase) (HPR-A) of Methylobacterium extorquens, residues 26-311 are 35% similar to emb|CAB49675.1| phosphoglycerate dehydrogenase (serA), Nter fragment of Pyrococcus abyssi. ","
InterPro
IPR006139
Domain
D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region
PF00389\"[35-315]T2-Hacid_dh
InterPro
IPR006140
Domain
D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
PF02826\"[107-287]T2-Hacid_dh_C
PS00065\"[150-177]?D_2_HYDROXYACID_DH_1
PS00670\"[197-219]TD_2_HYDROXYACID_DH_2
PS00671\"[226-242]TD_2_HYDROXYACID_DH_3
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.720\"[99-288]TG3DSA:3.40.50.720
PTHR10996\"[1-314]TPTHR10996
SSF51735\"[98-288]TSSF51735
SSF52283\"[1-131]TSSF52283


","BeTs to 7 clades of COG0111COG name: Phosphoglycerate dehydrogenaseFunctional Class: EThe phylogenetic pattern of COG0111 is amtkYqVcebrhuj-------Number of proteins in this genome belonging to this COG is 2","***** IPB002162 (D-isomer specific 2-hydroxyacid dehydrogenase) with a combined E-value of 4.7e-30. IPB002162A 102-113 IPB002162B 147-159 IPB002162C 212-263 IPB002162D 274-293","Residues 75-285 are 39% similar to a (NAD DEHYDROGENASE OXIDOREDUCTASE PROTEIN HYDROLASE) protein domain (PD000699) which is seen in O50095_PYRHO.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon May 7 16:33:16 MDT 2001","Wed Feb 14 12:22:32 MST 2001","Wed Feb 14 12:22:32 MST 2001","Fri Feb 23 09:26:14 MST 2001","Wed Feb 14 12:22:32 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 36-311 are 34% similar to PG1898, a predicted dehydrogenase protein. Similarities are also seen to PG1127 and PG1081. ","Wed Feb 14 12:34:54 MST 2001","Wed Feb 14 12:22:32 MST 2001","-54% similar to PDB:1WWK Crystal structure of phosphoglycerate dehydrogenase from Pyrococcus horikoshii OT3 (E_value = 2.2E_44);-58% similar to PDB:2CUK Crystal structure of TT0316 protein from Thermus thermophilus HB8 (E_value = 1.2E_42);-54% similar to PDB:1YGY Crystal Structure of D-3-Phosphoglycerate dehydrogenase From Mycobacterium tuberculosis (E_value = 1.4E_35);-54% similar to PDB:2DBQ Crystal Structure of Glyoxylate Reductase (PH0597) from Pyrococcus horikoshii OT3, Complexed with NADP (I41) (E_value = 4.2E_35);-54% similar to PDB:2DBR Crystal Structure of Glyoxylate Reductase (PH0597) from Pyrococcus horikoshii OT3, Complexed with NADP (P1) (E_value = 4.2E_35);","","","Residues 9 to 96 (E-value = 4.5e-14) place PG1060 in the 2-Hacid_dh family which is described as D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain (PF00389)Residues 102 to 285 (E-value = 9.8e-48) place PG1060 in the 2-Hacid_dh_C family which is described as D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain (PF02826)","Mon May 7 16:33:16 MDT 2001","34540908","","","","","","1","","11","PG1190" "PG1061","1274122","1275267","1146","ATGAACGAAAAATATAGGGCAGAGCTGCAAGAGCTGGAAGAAAGCGGGAGTCTCAGGCAGCTTAGGAATCTGATACACGATGGCAGCTACATCATCGAGGAGGAAAGACGAATGCTCAACCTCTCCTCGAACGATTATCTCGGACTGACTGCTCGGGAAGATCTGATAGATGAGTTTTATACCTCTATCTCTGGAGAGGATCGACTTCCGGGCAGCTGTTCCTCCCGTCTGCTCACGGGCAATAGTACGGCATATGACAGATTGGAGAGGATGATAGCGGAACGATTCGGACGCGAATCTTCTCTGATATTCAACAGCGGTTACCACCTCAACACAGGCGTTCTACCGGCTCTTGTGGATGAACGGACCTTGATCGTGGCAGACAGATTAGTTCATGCCAGCATCATAGATGGCATCCGACTCTGTGGAACGCCTTTCGAGCGATTTCGGCACAATGATCCGGAGCATTTGGAGCGGATCCTCCACAAGAATAAAGATCTATACAGCCGGATCATCATAGCAGTAGAGAGTATATATAGTATGGACGGCGATGTGGCCGATCTCCCATCCTTGGTTGATCTCAAAGAGCTATACCCTACCGTCGAGCTATATGTGGACGAAGCTCATGCCATAGGAGTAAGGGGAAAAACCGGTTTAGGCTTGGCGGAAGAGACTGCTACCATTGGGAAAATAGACTATCTGGTCGGCACATTCGGAAAAGCATTGGCCTCTATGGGTGCCTATATAGTCTGTGACAATGTCGTACGTGAATACCTGATCAATCGAAGTCGTTCGCTTATATTCTCCACAGCTTTACCACCTGCTACGATAGGATGGACTGAACTGATATTCCGTCGGCTACCTGAGTTTGTGATGGAGAGAAAGCGGCTGGAGGATTCTGCTACGCTTTTGCGTGATGCTATCAAGGGAAAAGGCATAGAAATGCCATCATCGAGTCACATCATTCCCTATATGGTAGGCGAAAATGCTCCTTGCATTGCGTTGGCCGAACATCTTCAGGACAATGGCTTCTTCGTACTCCCGATACGACATCCGACCGTGCCTCTCCACACGGCTCGCCTGCGCTTCTCTCTGACGGCAGCACTCGACACAGCAAGCATTCATAAACTGATTGATATTCTCCCC","5.50","-10.26","42872","MNEKYRAELQELEESGSLRQLRNLIHDGSYIIEEERRMLNLSSNDYLGLTAREDLIDEFYTSISGEDRLPGSCSSRLLTGNSTAYDRLERMIAERFGRESSLIFNSGYHLNTGVLPALVDERTLIVADRLVHASIIDGIRLCGTPFERFRHNDPEHLERILHKNKDLYSRIIIAVESIYSMDGDVADLPSLVDLKELYPTVELYVDEAHAIGVRGKTGLGLAEETATIGKIDYLVGTFGKALASMGAYIVCDNVVREYLINRSRSLIFSTALPPATIGWTELIFRRLPEFVMERKRLEDSATLLRDAIKGKGIEMPSSSHIIPYMVGENAPCIALAEHLQDNGFFVLPIRHPTVPLHTARLRFSLTAALDTASIHKLIDILP","1274122 1275267","TIGR ID: PG1195","8-amino-7-oxononanoate synthase","Cytoplasm","Numerous significant hits to 8-amino-7-oxononanoate synthase in gapped BLAST; e.g. residues 3-376 are 51% similar to gb|AAC23202.1| 8-amino-7-oxononanoate synthase of Haemophilus influenzae Rd, residues 5-376 are 52% similar to gb|AAF40909.1| 8-amino-7-oxononanoate synthase of Neisseria meningitidis MC58, residues 5-367 are 53% similar to emb|CAB85232.1| 8-amino-7-oxonoanoate synthase of Neisseria meningitidis Z2491.This sequence is similar to BT1443.","
InterPro
IPR001917
Binding_site
Aminotransferase, class-II
PS00599\"[237-246]?AA_TRANSFER_CLASS_2
InterPro
IPR004839
Domain
Aminotransferase, class I and II
PF00155\"[36-381]TAminotran_1_2
InterPro
IPR015421
Domain
Pyridoxal phosphate-dependent transferase, major region, subdomain 1
G3DSA:3.40.640.10\"[52-290]TPyrdxlP-dep_Trfase_major_sub1
InterPro
IPR015424
Domain
Pyridoxal phosphate-dependent transferase, major region
SSF53383\"[1-381]TPyrdxlP-dep_Trfase_major
noIPR
unintegrated
unintegrated
PTHR13693\"[26-381]TPTHR13693
PTHR13693:SF4\"[26-381]TPTHR13693:SF4


","BeTs to 11 clades of COG0156COG name: Biotin biosynthesis protein BioF and related aminotransferasesFunctional Class: HThe phylogenetic pattern of COG0156 is -m-kYq-cEBRhuj----iNxNumber of proteins in this genome belonging to this COG is 3","***** IPB001917 (Aminotransferases class-II) with a combined E-value of 2.2e-15. IPB001917A 69-80 IPB001917B 127-136 IPB001917C 201-215 IPB001917D 349-362","Residues 321-367 are 55% similar to a (SYNTHASE TRANSFERASE ACID BIOSYNTHESIS SYNTHETASE) protein domain (PD001038) which is seen in BIOF_HAEIN.Residues 79-279 are 60% similar to a (PYRIDOXAL PHOSPHATE AMINOTRANSFERASE TRANSFERASE PROTEIN) protein domain (PD000087) which is seen in BIOF_HAEIN.Residues 3-78 are 40% similar to a (8-AMINO-7-OXONONANOATE SYNTHASE EC) protein domain (PD107246) which is seen in BIOF_HAEIN.Residues 235-370 are 31% similar to a (8-AMINO-7-OXONONANOATE SYNTHASE 7-KETO-8-AMINO-) protein domain (PD163893) which is seen in Q9ZLN3_BBBBB.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Feb 14 13:00:20 MST 2001","Thu Dec 4 15:30:43 2003","Wed Feb 14 13:00:20 MST 2001","Fri Feb 23 09:37:09 MST 2001","Wed Feb 14 13:00:20 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1-379 are 32% similar to PG0439, a predicted 2-amino-3-ketobutyrate coenzyme A ligase. Similarities are also seen to PG1556, a predicted 8-amino-7-oxononanoate synthase.","Wed Feb 14 13:28:17 MST 2001","Wed Feb 14 13:00:20 MST 2001","-52% similar to PDB:1BS0 PLP-DEPENDENT ACYL-COA SYNTHASE (E_value = 2.5E_48);-52% similar to PDB:2G6W Suicide inhibition of a-Oxamine Synthase: Structures of the Covalent Adducts of 8-Amino-7-oxonanoate Synthase with trifluoroalanine (E_value = 2.5E_48);-52% similar to PDB:1DJ9 CRYSTAL STRUCTURE OF 8-AMINO-7-OXONANOATE SYNTHASE (OR 7-KETO-8AMINIPELARGONATE OR KAPA SYNTHASE) COMPLEXED WITH PLP AND THE PRODUCT 8(S)-AMINO-7-OXONANONOATE (OR KAPA). THE ENZYME OF BIOTIN BIOSYNTHETIC PATHWAY. (E_value = 2.7E_47);-52% similar to PDB:1DJE CRYSTAL STRUCTURE OF THE PLP-BOUND FORM OF 8-AMINO-7-OXONANOATE SYNTHASE (E_value = 2.7E_47);-51% similar to PDB:1FC4 2-AMINO-3-KETOBUTYRATE COA LIGASE (E_value = 1.5E_45);","","","Residues 70 to 381 (E-value = 1.3e-23) place PG1061 in the Aminotran_1_2 family which is described as Aminotransferase class I and II (PF00155)","Fri Apr 20 13:08:02 MDT 2001","34540909","","","","","","1","","11","PG1195" "PG1061.2","1275254","1275502","249","TTGATATTCTCCCCTGATGAATATGAAAAAATTTCCACTCTATGGCATAGGAGGGCGCAAAGGATGGGCATATTGGTTGCTCCTGTTCTATGGTCTGCTATTTGTGGCTTCGCTCATAGCATCCTATACCCGCAACGAAGAACCCGTGATACCGGCATTTGCTTTTTGAGACCTTTGCAAAATAAGGAGGTGGAGGGAAGAGGAGTTCTTGGCATAAAAGGAGCGAGTGAAAGGGGTGGCAGTAAGGAG","","","9352","LIFSPDEYEKISTLWHRRAQRMGILVAPVLWSAICGFAHSILYPQRRTRDTGICFLRPLQNKEVEGRGVLGIKGASERGGSKE","","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No hits found in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-40]?signal-peptide
tmhmm\"[23-43]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Wed Feb 14 13:36:54 MST 2001","Wed Feb 14 13:36:54 MST 2001","Wed Feb 14 13:36:54 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 35-83 are 63% similar to PG0837, a predicted hypothetical protein. Similarities are also seen to PG1663 and PG1086.1.","Wed Feb 14 13:36:54 MST 2001","Thu May 31 14:30:45 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu May 31 14:30:45 MDT 2001","","","","","","","1","","11","" "PG1062","1276653","1275571","1083","ATGGCATACCAATCCAAGAATACCGATGAGCATGTAACATTTGCAGACGCACTCCTTTCAAAGCGTTATCGCAAAGCACAAAACGACTTCCTCAATCAGGTTGACAGGCTTATCGATTGGCGTCCGATCAGGACGCTGATCAACAAGAAATACACCAAGCGACAAAATGCCATCGGCGCCCCGGCTTATGACGTGATTCTCTTATTCAAGATGTTGCTTTTGGAGACATGGTACAACCTCAGTGATTGTGCTTTGGAGGAGCGCATCAATGATTCAATCACCTTTTCCCGATTCTTGGGGCTGAAGATGGAAGAGGTTTCTCCCGACCACAGTACCATCAGTCGATTTCGTTCGGCACTGACAGAGTTGGGTCTCATGGACAAACTATTGGCGCAGTTTAACAAACAACTTTCCCGCCATCACATTTCGGTCAGGGAAGGGGTGCTTGTCGATGCAAGCCTTGTGGAGACGCCGCATAAACCCAACGGAAGCATTACGATTGAAGTCGCAGACGACAGAGAAGACAATCGGAGCGAGGAGGAAAAAGAGGCAGAGGAGGATTATCAAAAACAGGTTGTCCGTCAGCGTAAAGGGACGGATGAAGAAGCCCGTTGGGTTTACAAACAAAAGCGTTATCACTACGGATACAAAAAGCATTGTCTGACCAATGTTCAAGGCATTGTTCAAAAGGTGATAACGACTGCAGCGAACCGCAGTGACACGAAGGAGTTTATTGCGCTATTGCAGGGTGCAAACATACCTCAAGGCTCAGCCGTCTTGGCGGACAAAGGATATGCTTGCGGGGAAAATCGTTCCTACCTGCAAACCCATCACCTTCAAGACGGCATCATGCACAAGGCACAACGCAACAGGGCATTGACCGAGGAAGAGAAGCAACGAAACAAAGCAATCAGTCGGATACGGAGCACCATCGAACGCACCTTTGGCAGTATTCGCCGGTGGTTTCATGGCGGACGATGTCGATACCGGGGACTTGCCAAGACCCATACTCAAAACATTCTTGAAAGCATCGCCTTTAATTTATACAGAACCCCGGGGATAATTATGTCCTCATTTGTAGGA","10.20","14.72","41742","MAYQSKNTDEHVTFADALLSKRYRKAQNDFLNQVDRLIDWRPIRTLINKKYTKRQNAIGAPAYDVILLFKMLLLETWYNLSDCALEERINDSITFSRFLGLKMEEVSPDHSTISRFRSALTELGLMDKLLAQFNKQLSRHHISVREGVLVDASLVETPHKPNGSITIEVADDREDNRSEEEKEAEEDYQKQVVRQRKGTDEEARWVYKQKRYHYGYKKHCLTNVQGIVQKVITTAANRSDTKEFIALLQGANIPQGSAVLADKGYACGENRSYLQTHHLQDGIMHKAQRNRALTEEEKQRNKAISRIRSTIERTFGSIRRWFHGGRCRYRGLAKTHTQNILESIAFNLYRTPGIIMSSFVG","1276653 1275571","Member of the IS5 family of elements. A full-length ISPg1 element.TIGR ID: PG1197","ISPg1 transposase (IS1106-related) transposase","Cytoplasm","PG1422 is equivalent to the previously sequenced AJ130872 and AB015879 in GenBANK. Residues 31-350 are 34% similar to the IS1106 transposase of N. meningitidis (AE002488). Residues 1-156 and 282-361 conform to the previously sequenced IS1126 element of gingivalis (AB019363)","
InterPro
IPR002559
Domain
Transposase, IS4-like
PF01609\"[147-348]TTransposase_11


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 157-302 are 87% similar to a (TRANSPOSASE PLASMID PROTEIN ELEMENT) protein domain (PD004652) which is seen in Q9ZA61_PORGI.Residues 12-109 are identical to a (TRANSPOSASE PROTEIN INSERTION ELEMENT) protein domain (PD007264) which is seen in Q9ZAD0_PORGI.Residues 303-361 are identical to a (TRANSPOSASE ORF7 INSERTION SEQUENCE IS1126-LIKE GENE) protein domain (PD187845) which is seen in Q9ZA61_PORGI.Residues 110-156 are identical to a (TRANSPOSASE ORF7 INSERTION SEQUENCE IS1126-LIKE GENE) protein domain (PD187846) which is seen in Q9ZA61_PORGI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Fri Feb 16 11:15:03 MST 2001","Mon Feb 12 15:29:52 MST 2001","Thu Dec 21 16:15:58 MST 2000","Thu Dec 21 16:15:58 MST 2000","","Mon Feb 12 15:29:52 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1062 is identical to PG1267, PG0169, PG1662, PG1050, PG0740, PG0918, and PG1422, all ISPg1 transposases. PG1062 is essentially identical to PG0420, PG0499, PG1099, PG1184, PG1087, PG0763, PG1755, PG0686, PG1798, PG0756, PG1919, PG1230, and PG0044, most of which are ISPg1 transposase fragments. Similarities also exist to PG0732, PG0842, PG1607, PG0731, PG0884, PG0689, PG1215, PG1665, PG0839, PG1895, PG0883, PG11231, PG0730, PG1159 and PG1608, all ISPg1 fragments. ","Mon Jun 4 11:19:41 MDT 2001","Fri Feb 16 11:15:03 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 147 to 348 (E-value = 2.2e-40) place PG1062 in the Transposase_11 family which is described as Transposase DDE domain (PF01609)","Mon Jun 4 11:19:41 MDT 2001","34540911","","Hanley,S.A., Aduse-Opoku,J. and Curtis,M.A.A 55-kilodalton immunodominant antigen of Porphyromonas gingivalisW50 has arisen via horizontal gene transferInfect. Immun. 67 (3), 1157-1171 (1999)Maley,J. and Roberts,I.S.Characterisation of IS1126 from Porphyromonas gingivalis W83: a new member of the IS4 family of insertion sequence elementsMicrobiol. Lett. 123 (1-2), 219-224 (1994)Shibata,Y., Hayakawa,M., Takiguchi,H., Shiroza,T. and Abiko,Y.Determination and characterization of the hemagglutinin-associatedshort motifs found in Porphyromonas gingivalis multiple geneproducts. J. Biol. Chem. 274 (8), 5012-5020 (1999)","Knight,A.I., Ni,H., Cartwright,K.A. and McFadden,J.J.Identification and characterization of a novel insertion sequence,IS1106, downstream of the porA gene in B15 Neisseria meningitidis.Mol. Microbiol. 6 (11), 1565-1573 (1992)","Mon Feb 12 15:29:52 MST 2001","Mon Feb 12 15:29:52 MST 2001","1","","11","PG1197" "PG1063","1277036","1277458","423","ATGACAACCCAGAAAAAATTCTACGTGCGAGGGTTCTCTGAAAAGCGTGGAGCCAGATTTTGGATCTCGATATTTTACATCGTTGTAACGATCATTACACTTATCTTGTGGATTTTCTCTCTTGCCAATTTGTCTGTTTATTACTTAGGCACATACTTCTTATTATACTCGATTTTTATGGGTTTGCAGCCGGAAGCCTACCTTATCGATGAAGAGACGAAAACCCTGCGCAAGGTAATTGCATACGGATTCTACACGACAAAAGGGCGTCCTCTATCGGATTACATGGGTGCCGAACTTGGCCAAAACAGCAAGTACAATGTAGAACTCAGGACTAATACCGGGGTCTCATTCATTGCGTTCCAAGAGGCTGATGCTTTTTGCTCCGCTCTCAATACGGCCATTGCAGCTAACGAAAGCAAG","9.70","2.94","16103","MTTQKKFYVRGFSEKRGARFWISIFYIVVTIITLILWIFSLANLSVYYLGTYFLLYSIFMGLQPEAYLIDEETKTLRKVIAYGFYTTKGRPLSDYMGAELGQNSKYNVELRTNTGVSFIAFQEADAFCSALNTAIAANESK","1277036 1277458","TIGR ID: PG1199","hypothetical protein","Inner membrane, Cytoplasm","This sequence corresponds to gi:34397228 in Genbank.","
noIPR
unintegrated
unintegrated
signalp\"[1-44]?signal-peptide
tmhmm\"[20-40]?\"[46-68]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Feb 14 13:43:32 MST 2001","Mon Mar 7 09:53:36 2005","Wed Feb 14 13:43:32 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Feb 14 13:43:32 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540913","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Mon Mar 7 09:53:36 2005","","1","","11","PG1199" "PG1064","1278085","1277576","510","GTGAAGAAGGTGTTGTACATAATATTGAGCGGTCTTTTATTGCTTGTATTGGTTGTCGTGCTCACAGGAGCACTCCTTCCGAGAATCAGAACGAAGACAAAACAGTGCATTTTGAATGCTCCTGTTGATGTCGTTTTTGCTATCGTGACCAACAATCAAGAATGGCATTACAGAAGTTCTTTGGATGATTTGGAGATCATCCGTATCCAAGGGGATATTGAAGAATGGGAAGAGACTGCCAATGGCGTAACTATCAGATTCAAGACACTTGAGAAGAGACCGCATTCTTTCTACAGTTTTGAGATGGATAGTAAAATGTTCACAGGGAAGTGGCAAGCAATATTTGAACCGATGGAAGGAGGTAAAACCCTATTCACTGCAACAGAAAAGATAGAATACAAGAACCTGTTCTATCGTTTGGTTGGGTATGCTTTTATGGACTTAAACAAGTTTATGACCACATACCAAGAAGAACTCACAGCTCGAATAGAACTTGAAAAAGCAGAGCAA","5.90","-1.56","19810","VKKVLYIILSGLLLLVLVVVLTGALLPRIRTKTKQCILNAPVDVVFAIVTNNQEWHYRSSLDDLEIIRIQGDIEEWEETANGVTIRFKTLEKRPHSFYSFEMDSKMFTGKWQAIFEPMEGGKTLFTATEKIEYKNLFYRLVGYAFMDLNKFMTTYQEELTARIELEKAEQ","1278085 1277576","TIGR ID: PG1200","hypothetical protein","Cytoplasm, Inner membrane","No hits found in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-23]?signal-peptide
tmhmm\"[5-25]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Feb 14 13:47:48 MST 2001","Wed Feb 14 13:47:48 MST 2001","Wed Feb 14 13:47:48 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Feb 14 13:47:48 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540914","","","","","","1","","11","PG1200" "PG1065","1279269","1278268","1002","ATGACAGTAGAGAAGTTCCATTTTGATGAAGGGGATGTATTGGTGGCAGAAGTTCAGCCCTCAGAATTTCCTCCTGTACGTTATCGCGGGCGCGTTTGGGTACGTGTGGGTCCTCGAAAAAGCATTGCAACAGAGGCAGAAGAAAAGATACTTACCGAAAGACGGCTCTCCAACATTCATACCTTTGACGCCATGCCTTGCCTAGGCACGAGCATTGACGACTTGGATGTATCTCTCATTCGTAAGGAGTTTTTGCCCAAGGCTGTGGCAGAGGATGTTCTCGGTGAAGACAAACGAGATATCACGGATCAATTTGCCTCTCTTGGCTTATATGATTTGCGTTATAACTGTCCGACTAATGGGGCTATTGTCCTATTCGGAAAGAATCCTGAGCGACACGTACATGGGGCGTATATTCAATATGTTCGCTTCAAGGGTAAGGATCGTGCGGGTGATATTCTCAACGAACATAAGTTTAGCGGTAATCTTTGTCGGGTATTGCCTAAGATTGATGCTTTTGTCGAGACAAGTATCTCACAAAAGCGTCCCATTCCCGTGAGTGTACTTCGGGAAGAAACAGTTTCCAAGTATCCATACTGGGCTACTCGAGAGTTGTTGATGAATGCCATTATGCACAGGGATTACGAGGGAAACGCTCCTATTCAGTTTTATGAGTATGATGATCGCATTGAGATCCAAAACCCCGGCGGATTGTACGGCAAGGTCAGTCCCGACAATTTCCCCAATGTTAGCGATTATCGGAATCCCTTTATTGCCGAAGCAATGAAAGTCTTGGGCTATGTAAACCGATTCAGCCGTGGAGTCTATCGAGTTCAGAAGGAGTTGGAAGAAAACGGTAACGGGCAAGCCTCTTTTGATTTTTCATTGATTACAGCTTTTCGAGTAGTCGAGAACGTTTCTCAAAAGTATTTTGAAGAAGGCTTTGGGGGAGAAACAGCCCAAGAAAAGCACAGGAAAGACCCAAGAAAAGCCCAAGAAATA","6.20","-3.42","38287","MTVEKFHFDEGDVLVAEVQPSEFPPVRYRGRVWVRVGPRKSIATEAEEKILTERRLSNIHTFDAMPCLGTSIDDLDVSLIRKEFLPKAVAEDVLGEDKRDITDQFASLGLYDLRYNCPTNGAIVLFGKNPERHVHGAYIQYVRFKGKDRAGDILNEHKFSGNLCRVLPKIDAFVETSISQKRPIPVSVLREETVSKYPYWATRELLMNAIMHRDYEGNAPIQFYEYDDRIEIQNPGGLYGKVSPDNFPNVSDYRNPFIAEAMKVLGYVNRFSRGVYRVQKELEENGNGQASFDFSLITAFRVVENVSQKYFEEGFGGETAQEKHRKDPRKAQEI","1279269 1278268","NO TIGR ID corresponds to this gene.","conserved hypothetical protein","Cytoplasm","Several weak hits in gapped BLAST; e.g. residues 118-275 are 31% similar to gb|AAF11748.1|AE002053_3 ATP-dependent DNA helicase RecG-related protein of Deinococcus radiodurans, residues 194-286 are 32% similar to emb|CAB50412.1| hypothetical protein of Pyrococcus abyssi, residues 119-286 are 28% similar to pir||T45499 probable DNA recombinase recG of Thiobacillus ferrooxidans. ","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 125-286 are 28% similar to a (ATP-DEPENDENT DNA HELICASE RECG) protein domain (PD106643) which is seen in RECG_THIFE.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Feb 14 14:01:23 MST 2001","Wed Feb 14 14:01:23 MST 2001","Wed Feb 14 14:01:23 MST 2001","","Wed Feb 14 14:01:23 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 143-278 are 28% similar to PG1335, a hypothetical protein. Similarites are also seen to PG1323, a putative RecG protein.","Mon Jun 4 11:22:32 MDT 2001","Wed Feb 14 14:01:23 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jun 4 11:22:32 MDT 2001","","","","","","","1","","11","" "PG1065.1","1279525","1279247","279","ATGATAACGAAAAAGGAACTTCTACAAATGCTCTCGGACACTGAGAGCTATAATATTGAGAATCAACTGGCAATATGGATAAGTTTTGTCAGGCGATATGTGCTTTCTCAAATGATATTTCGGGTAGTGGCAAGAATGGCTATCTCATTATTGGCGCAAAGGATAATGGAGAGTTGTCAGGTTTGCAGGTTGATGATAAACTCTTATTGCAGATTGCCAATATTCGGACGGATGGCAACATTCTCCCTCACCCACCATGACAGTAGAGAAGTTCCATTT","","","10976","MITKKELLQMLSDTESYNIENQLAIWISFVRRYVLSQMIFRVVARMAISLLAQRIMESCQVCRLMINSYCRLPIFGRMATFSLTHHDSREVPF","","TIGR ID: PG1201","hypothetical protein","Cytoplasm","No hits found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Wed Feb 14 14:05:49 MST 2001","Wed Feb 14 14:05:49 MST 2001","Wed Feb 14 14:05:49 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","11","PG1201" "PG1066","1283107","1279688","3420","ATGTTAAAGGAAGTCATATTGGTCACACAACTAAATAAATATATCATGAAATTATTTAGAAAGTTGTTTGGCAAGGAACTGGCAAAACCAAATACCTCTGTTGAACAACAAGGAAAAAATCCGATATCTGTCATAGGCAATGTAACAGAGAGTTATATTGGATGCACAATCAATATTAATGAAATTGAACCACAATGGCAAGATCGGCTCAATGCATATATAGCTACTTTGCAACAATTTAAACCCAAAACGGCGTTGTCATTGCTTGAAAAATTGGAGGCAAGTTTCGCAACAAGTGCAAAAAAACCTTCTCCAGAGTTTCACTCCTTAATATCATTTCAAAAAGGGATGTGCTATCGTTTTTTGGACGAACGAAAGAAGATGTGTGAATGTTTTATAACTGCATACAATGAAAATACTTCAGTGCTTGAGTTTGAGGAGCAGGCTGCTCTTTCGTATTTTAAAATAGAAGATACACAAAGAGCAAATGAACTGGTTGATAAGTTATTGTGTAGAAATGAATATAATCCAATTGCATGGTATATCAAATTTTTGAGTACTACGACTTATGATTTTAATTCTATTCCGGCATTTGTTCGGCAGAATATCATGTTTCAATATATGCTTTACAATTACTTCAATGTGAAAAATATTTACAAATGTATTTCACAGATGAAGGCTTTTTCAATGCTTCCCAATGTCAAAGATTATAGTCCTCAAGATATAACCATAGCCAATTTTGACGAAAATATATTTTACTCAAACGTATTCTTTTCTGAATATTTACAAAACTATTACTTTGCTTTCCATTCTTTGAAAGAGGGGAATGTTGAGATTCTAAAAACACTGGAGGTACTTCTAAAAAAAATAGTATCTGCAATCAATGGTTCTGAATTGGAAAAGAAATATGGAACATTGTTTTTTCTTAATGCTTATATCCAATATATACTTACAAAAGAGCTGAGATATATTTCTGACATGAGAGATCATTATCTCAAATTAGAGAACAAAAACGACACTCTTGCTTTGGTTTGTGCCAATGTGTTACAACTCAATGAACAAATAGATTATGCTCTTGAAATCTTAGATGATTCTGATTTAAAAGAGTCGAATATTTTCTTCCTGAGGGCTTTCTGTTATCTAAAGAAAAATGATAAAATCCAATATAGGACAGCAATACAAGCCTGGATAAATTCCATTGAGAAAATTGATAACTATGTAGTTGATAACTATCTTGCTTCAATTTTTACATTAAAGGATATAGGCGAAACAGATGAATTAAAACTATCTGATTTTATTCAAAACGAGAAGTTTGAAAATCAGGAATTGAAAACTTTAATAGAAACGATTGTTAAATCCCTAATTAGCGGAATATTGGACTCTCCGCAGATATCGACTTTGAGCGAGTTAGCTTCTACTATTCAACAGCCGAATTTATTATTACACATTGCTTATACCTACTATCATTTTAAAATGTATGAACCTGCTATAGAGTTATATGAAAAGCACGTTGACAGAGAAAAAGAGAATCTTCATTTATTTTCCTATATGAATTCTTTATATGCAGCAAAAAAAGGCTCGGATGAACTACTTGGACTATTAGAAAATTGGAGATTGAATTTTTCATTTCAACCTGATTTACTAAAAATTGAAGCTGATTTGTGTGTTATTTTACACAATTGGAATAGATGTTTGCAAATTTGTAATCTATTCTTAGATAAACACAAACAAGATGAGGCTTTTTTATGTCTGAAATTAAGGTGTTTAGATGTTATAAACGAAGATTGGTGTGATAGTGAAATTAAATTAATGGCAAAAAGTTTTGAAGACTATGCTTTTTCTATTGATCAAAACATACCAATAGTGGCAAGTATATTAGTTAATAGAGGTTGTTTTGTTGAAGGAATGGAAATTCTTTATAAATATTCTGATAAAAGAAATGTCCGTTCTGCATATCTGCCTGCAACACTTATATATTCTCAAAGATCACAAAATAAAGAGCTTCTGAAAGAATTTGATGAAATTACAGATGGCTGTTTCGTAAAATATGAGTCTAATGGTGAAATCAATTTCTTTGAAATGAATAAAAATGGCTCTGACAACTTATATGATGAGTTATTAGGACACAAATTAGGTGATGTAATATCCATTAAAAGAATGTCAAGCAAAGATTATTCAATTCGCATATTACGAATAATGGATAAGTATCTTTATTTACATGATAAAATCTTAGAAGAAGCCAAGCAGCCTCTTTCGGGATTGCCAATGGAATCTTTCAACTTTACTAGCACTGACCCAGAAGCAATGAAGAAAGAATTAATTTTTCTTTTCGGACAAAAAGGTGAGGAAGAAAAGCTGATTAGAGAAAAATTAATAAATAACTATTACAACAGAGAATTATCTTTTACTGAAGTAATAATACAGGCATTTAGGCATGATTATTTAGGAGGTTATACAAGTTTGATTTATGAGCACAGTGGTATCTCAATCCTTCCTCTTTCATTTTATGAATCACCACCTCAACTTGTTACAACGAATTATATTATTGACTTTTCTTCATTGGCTATTCTTTATCAGATAGCAAAAGAACACAGCATTACATATACTAACAAATTTCTAATTTCAGTTTTTACTATAGATGTGATAAAACAGAAATTGAGAATTATTAAATCAGAACCAAAATCTGAATTATCAGTTGTCGTAACAAACGAAGACGTAATAAAATATCAGATTCCAGAAAATGTACATCAAAATAATATTATATATTTAGAGGGTCTTTTAAAATGGATAGAAAATAACTGTGAAGCAGTTGTTTCTCCTAGAGTAATTGATTTTAAAAGGAATATAGATATAGAAGATAAAAAAGAGGATTTTATTGACTATATTTTGAATACTTTATTAGTTTTCGAAGATAAGCAATGCGTATTGCTGACAGACGACTTTGTTTATTTCAAATTCAATTTAGCTCAGATTCAGTTCTCAATGAGCACAGAGCGATATATAAAAAACATTTTAGGAGACGAGCACCCAGCCTTGTTTGAATTTATCAAAAATAAGTATAGGGGATATACATTGACTACAAAACAATTATTTGGAGAGTTTAATAAAAAAATGAATTCCCAAGATAATTATTATACTAATTGCTTAGAAAATATCAGTATGGTTTCTGCTATGCCATGTGTAAGATTAGTGGATATGATTGTACAAACACAACTTGATACTAATCAAAAAGAGATTGAGATAAAAAATATATTCATTAATATATTCAAAAATGGCCCTTTAAGTAATGAGATTATTCAAGGTTTTCAACAGCTGCTCTTCTCAGAGTTAAACTGCTCGCATGAGAACCTCAATTTTGTTCGTCAATGTTTAGAGAATGTGTATCAAACACTGGGAATAAGTATGATAAATACAAAGAAA","5.20","-24.80","133479","MLKEVILVTQLNKYIMKLFRKLFGKELAKPNTSVEQQGKNPISVIGNVTESYIGCTININEIEPQWQDRLNAYIATLQQFKPKTALSLLEKLEASFATSAKKPSPEFHSLISFQKGMCYRFLDERKKMCECFITAYNENTSVLEFEEQAALSYFKIEDTQRANELVDKLLCRNEYNPIAWYIKFLSTTTYDFNSIPAFVRQNIMFQYMLYNYFNVKNIYKCISQMKAFSMLPNVKDYSPQDITIANFDENIFYSNVFFSEYLQNYYFAFHSLKEGNVEILKTLEVLLKKIVSAINGSELEKKYGTLFFLNAYIQYILTKELRYISDMRDHYLKLENKNDTLALVCANVLQLNEQIDYALEILDDSDLKESNIFFLRAFCYLKKNDKIQYRTAIQAWINSIEKIDNYVVDNYLASIFTLKDIGETDELKLSDFIQNEKFENQELKTLIETIVKSLISGILDSPQISTLSELASTIQQPNLLLHIAYTYYHFKMYEPAIELYEKHVDREKENLHLFSYMNSLYAAKKGSDELLGLLENWRLNFSFQPDLLKIEADLCVILHNWNRCLQICNLFLDKHKQDEAFLCLKLRCLDVINEDWCDSEIKLMAKSFEDYAFSIDQNIPIVASILVNRGCFVEGMEILYKYSDKRNVRSAYLPATLIYSQRSQNKELLKEFDEITDGCFVKYESNGEINFFEMNKNGSDNLYDELLGHKLGDVISIKRMSSKDYSIRILRIMDKYLYLHDKILEEAKQPLSGLPMESFNFTSTDPEAMKKELIFLFGQKGEEEKLIREKLINNYYNRELSFTEVIIQAFRHDYLGGYTSLIYEHSGISILPLSFYESPPQLVTTNYIIDFSSLAILYQIAKEHSITYTNKFLISVFTIDVIKQKLRIIKSEPKSELSVVVTNEDVIKYQIPENVHQNNIIYLEGLLKWIENNCEAVVSPRVIDFKRNIDIEDKKEDFIDYILNTLLVFEDKQCVLLTDDFVYFKFNLAQIQFSMSTERYIKNILGDEHPALFEFIKNKYRGYTLTTKQLFGEFNKKMNSQDNYYTNCLENISMVSAMPCVRLVDMIVQTQLDTNQKEIEIKNIFINIFKNGPLSNEIIQGFQQLLFSELNCSHENLNFVRQCLENVYQTLGISMINTKK","1283107 1279688","TIGR ID: PG1202","hypothetical protein","Cytoplasm, Outer membrane","This sequence corresponds to gi:34397230 in Genbank.","
noIPR
unintegrated
unintegrated
SSF48439\"[114-594]TPrenyl_trans


","BeTs to 3 clades of COG0457COG name: TPR-repeat-containing proteinsFunctional Class: RThe phylogenetic pattern of COG0457 is AMTKYQVCEB-HUJ--OLINXNumber of proteins in this genome belonging to this COG is 21","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Feb 14 14:09:51 MST 2001","Mon Mar 7 10:05:55 2005","Wed Feb 14 14:09:51 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540915","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Mon Mar 7 10:12:18 2005","","1","","11","PG1202" "PG1067","1283539","1283333","207","ATGAATCGAATCAAAGAAGTGCTTGAGGAGAAAGGCATCAAGCAAACCTGGCTTGCCGAAAAACTCGGCAAAAGCTTCAGCATTGTCAATTCCTACGTCTGCAATCGCCGCCAACCAAGTTTGGACATATTGTTTGAAATTGCGAAGATATTAGAGGTGGACGTGAGAGTGTTGATTGGCACTAAGGAAAACAGACAGAAGAGCAAA","10.40","4.94","8015","MNRIKEVLEEKGIKQTWLAEKLGKSFSIVNSYVCNRRQPSLDILFEIAKILEVDVRVLIGTKENRQKSK","1283629 1283333","TIGR ID: PG1203","hypothetical protein","Cytoplasm","No significant hits found in gapped BLAST.","
InterPro
IPR001387
Domain
Helix-turn-helix type 3
PF01381\"[4-58]THTH_3
SM00530\"[3-58]THTH_XRE
PS50943\"[4-58]THTH_CROC1
InterPro
IPR010982
Domain
Lambda repressor-like, DNA-binding
SSF47413\"[2-65]TLambda_like_DNA
noIPR
unintegrated
unintegrated
G3DSA:1.10.260.40\"[2-66]TG3DSA:1.10.260.40


","BeTs to 4 clades of COG1396COG name: Predicted transcriptional regulatorsFunctional Class: KThe phylogenetic pattern of COG1396 is --T--qV-EBR---------xNumber of proteins in this genome belonging to this COG is 5","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 11:09:20 MDT 2001","","Thu Jun 14 11:09:20 MDT 2001","Thu Jun 14 11:09:20 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:09:20 MDT 2001","Thu Jun 14 11:09:20 MDT 2001","","","Wed Feb 14 14:12:37 MST 2001","Wed Feb 14 14:12:37 MST 2001","Wed Feb 14 14:12:37 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Feb 14 14:12:37 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 4 to 58 (E-value = 4e-10) place PG1067 in the HTH_3 family which is described as Helix-turn-helix (PF01381)","Wed Jun 20 14:08:37 MDT 2001","34540916","","","","","","1","","11","PG1203" "PG1068","1284015","1284563","549","ATGTATTTAAGAAAACGCCTTTCAGAGGATTTCTCCGACCTTGGGAAGGTTTATCAAGTGGAGACTAAAACGTATGTAATAATGGCAAGTAAACCATTGCAATTTGTGGTCGTAGAGCGAAAACTGAATGTGGGTAAAAACGCAGGTAAAGTAATGCAGATAGCAAGACCGACGGGGAGACATCGTGTAGACTTTCGCTCCTTTTGCGAACGTGTATCCAAGTCCACCACATTCAACCGTCAAGAAGTCGAGGCTGTATTGAACTATGCTACAGAGATTGCCAAAGACATTGTATCGAACGGCGACATCGTGGAGTTTGGAGACCTTGGCACACTAATGCCTTCTTTCAAAAGTAAGGCGGTAGAACAGGGGGTAAAGTTCAATGCTAATGTTCACATCGAAAAGCCTGTTGTCTTGTTCCAACCTTCCAAAAAGTACTTTACTCTCACCGATGTAAGCTATGAACAGACAACTGCCAGGCCAAAGAAAGGAACAAAACCTGCTCCAAAGCCTGATACCGGAAGTGGGGGGAATAGCGGTGAGGGCATA","10.40","9.43","20369","MYLRKRLSEDFSDLGKVYQVETKTYVIMASKPLQFVVVERKLNVGKNAGKVMQIARPTGRHRVDFRSFCERVSKSTTFNRQEVEAVLNYATEIAKDIVSNGDIVEFGDLGTLMPSFKSKAVEQGVKFNANVHIEKPVVLFQPSKKYFTLTDVSYEQTTARPKKGTKPAPKPDTGSGGNSGEGI","1284015 1284563","TIGR ID: PG1205","hypothetical protein","Periplasm","No hits found in gapped BLAST.","
InterPro
IPR005902
Family
Putative DNA-binding protein, HU-related
TIGR01201\"[28-183]THU_rel: DNA-binding protein, putative


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Feb 14 14:29:07 MST 2001","Wed Feb 14 14:15:26 MST 2001","Wed Feb 14 14:15:26 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 28-183 are 57% similar to PG1312, a hypothetical protein. Weaker similarities are seen to PG0306, PG1882, PG0764, and PG1781, all hypothetical proteins.","Mon Jun 4 11:28:29 MDT 2001","Wed Feb 14 14:15:26 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jun 4 11:28:29 MDT 2001","34540917","","","","","","1","","11","PG1205" "PG1069","1287008","1285089","1920","ATGGGAAAAATCATTGGAATTGACTTAGGCACAACGAACTCTTGTGTCTCTGTATTGGAAGGTAACGAACCTATCGTTATTACAAACAGTGAGGGCAAGCGCACAACGCCCTCGGTAGTGGCTTTTGTGGATGGTGGCGAGCGTAAGGTGGGCGATCCGGCCAAGCGTCAGGCCATCACCAATCCGACCAAGACGATATACTCTATCAAACGCTTCATGGGCGAAACTTACGATCAGGTTTCCAGAGAAGTGGAGAGAGTGCCATTCAAGGTAGTACGTGGGGACAATAATACTCCGCGCGTAGATATAGACGGTCGTCTCTATACGCCGCAGGAAATTTCGGCCATGATCCTTCAGAAGATGAAGAAGACGGCCGAAGACTACCTCGGTCAGGAAGTAACGGAGGCCGTGATCACTGTGCCCGCATACTTCAACGACGCTCAACGTCAGGCAACGAAAGAAGCAGGAGAGATCGCCGGCCTGAAAGTTCGCCGTATTGTGAACGAGCCTACGGCAGCTTCTCTGGCCTACGGTCTGGACAAGTCCAATAAGGATATGAAGATCGCTGTCTTCGACTTGGGTGGCGGTACCTTCGATATCTCTATCTTGGAATTGGGCGACGGCGTTTTCGAAGTGAAATCGACCAACGGTGATACGCACCTCGGAGGAGACGACTTCGACCACGTGATCATTGACTGGCTGGCAGAAGAGTTCAAGTCTCAGGAAGGTGTGGATCTTCGCCAGGATCCTATGGCTATGCAGCGTCTGAAAGAAGCTGCCGAAAAAGCCAAGATAGAGCTCTCCAGCACTTCATCTACGGAGATCAACCTCCCCTATATCATGCCGGTGAACGGCATCCCCAAGCACTTGGTGATGACGCTTACAAGGGCTAAGTTCGAGCAGTTGGCCGATCGTCTGATTCAGGCATGTGTGGCACCCTGCGAAACGGCCTTGAAAGATGCCGGTATGTCACGTGGCGATATCGATGAAGTGATTCTCGTAGGTGGTTCCACACGTATTCCTGCTATTCAGGAGATTGTGGAGAAGATCTTCGGTAAGGCTCCGTCCAAGGGTGTGAATCCCGACGAAGTGGTAGCTGTGGGTGCCGCTATTCAAGGCGGTGTTCTGACCGGTGAGGTAAAGGATGTCTTGCTGTTGGACGTTACCCCCTTGTCGCTCGGTATCGAGACTATGGGAGGCGTGATGACTCGCTTGATCGATGCCAATACCACTATCCCGACGAAGAAGAGCGAAATCTTTACCACAGCAGTGGACAATCAACCTTCGGTAGAGATTCATGTACTTCAGGGTGAGCGTTCTTTGGCTAAGGACAATAAGAGCATCGGCCGTTTCAACTTGGACGGTATTGCTCCGGCGCCCCGTCAGACACCGCAGATCGAAGTAACGTTTGACATCGATGCCAACGGTATCCTGAATGTAACGGCTCATGACAAAGCTACCGGCAAGAAGCAGAATATCCGCATCGAAGCCTCCAGCGGTTTGTCCGATGATGAGATCAAGCGCATGAAGGAAGAGGCGCAGGCCAATGCCGAAGCAGATAAGAAAGAGAAAGAACGTATCGACAAGATCAATCAGGCCGACAGCATGATCTTCCAGACGGAAAAGCAGTTGAAGGAGTTGGGAGACAAATTCCCGGCCGACAAGAAGGCTCCGATCGATACCGCTCTCGACAAACTGAAAGAAGCACACAAAGCACAGGATGTAGCTGCTATCGATACAGCCATGGCCGAACTGCAAACCGCTCTTTCCGCAGCGGGCGAAGAGCTTTACAAGAATGCCGGAGCAGCCCAAGGTGGCGCACAACCCGGTCCGGACTTCGGCGGTGCTCAAGGTCCCTCTGCCGGTGATCAGCCCTCTGACGACAAGAACGTCACAGACGTAGACTTCGAGGAAGTGAAG","4.70","-24.61","68966","MGKIIGIDLGTTNSCVSVLEGNEPIVITNSEGKRTTPSVVAFVDGGERKVGDPAKRQAITNPTKTIYSIKRFMGETYDQVSREVERVPFKVVRGDNNTPRVDIDGRLYTPQEISAMILQKMKKTAEDYLGQEVTEAVITVPAYFNDAQRQATKEAGEIAGLKVRRIVNEPTAASLAYGLDKSNKDMKIAVFDLGGGTFDISILELGDGVFEVKSTNGDTHLGGDDFDHVIIDWLAEEFKSQEGVDLRQDPMAMQRLKEAAEKAKIELSSTSSTEINLPYIMPVNGIPKHLVMTLTRAKFEQLADRLIQACVAPCETALKDAGMSRGDIDEVILVGGSTRIPAIQEIVEKIFGKAPSKGVNPDEVVAVGAAIQGGVLTGEVKDVLLLDVTPLSLGIETMGGVMTRLIDANTTIPTKKSEIFTTAVDNQPSVEIHVLQGERSLAKDNKSIGRFNLDGIAPAPRQTPQIEVTFDIDANGILNVTAHDKATGKKQNIRIEASSGLSDDEIKRMKEEAQANAEADKKEKERIDKINQADSMIFQTEKQLKELGDKFPADKKAPIDTALDKLKEAHKAQDVAAIDTAMAELQTALSAAGEELYKNAGAAQGGAQPGPDFGGAQGPSAGDQPSDDKNVTDVDFEEVK","1287008 1285089","From Prosite PDOC00269: Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by the induction of the synthesis o of proteins collectively known as heat-shock proteins (hsp). Amongst them is a family of proteins with an average molecular weight of 70 kD, known as the Hsp70 proteins. In most species, there aremany proteins that belong to the Hsp70 family. Some of them are expressed under unstressed conditions. Hsp70 proteins can be found in different cellular compartments (nuclear, cytosolic, mitochondrial, endoplasmic reticulum, etc.). TIGR ID: PG1208","DnaK protein (Hsp70)","Cytoplasm","Numerous significant hits to DnaK / HSP 70 proteins; e.g. residues 1-640 are 60% similar to DnaK protein (AE001203) of Treponema pallidum, residues 1-638 are 57% similar to DnaK protein (D6399) of Synechocytstis sp., residues 3-639 are 58% similar to DnaK protein (X52175) of Chlyamydia trachomatis, residues 1-640 are 57% similar to DnaK protein (D10765) of E. coli.This sequence is similar to BT4615.","
InterPro
IPR001023
Family
Heat shock protein Hsp70
PR00301\"[3-16]T\"[31-43]T\"[54-62]T\"[136-156]T\"[196-206]T\"[328-344]T\"[359-379]T\"[382-401]T\"[463-479]THEATSHOCK70
PTHR19375\"[1-518]THsp70
InterPro
IPR002876
Family
Protein of unknown function DUF28
PD004323\"[161-306]TDUF28
InterPro
IPR012725
Family
Chaperone DnaK
TIGR02350\"[3-598]Tprok_dnaK
InterPro
IPR013126
Family
Heat shock protein 70
PD000089\"[70-160]THsp70
PF00012\"[4-598]THSP70
PS00297\"[7-14]THSP70_1
PS00329\"[190-203]THSP70_2
PS01036\"[331-345]THSP70_3
noIPR
unintegrated
unintegrated
G3DSA:2.60.34.10\"[365-555]TG3DSA:2.60.34.10
G3DSA:3.30.420.40\"[4-208]TG3DSA:3.30.420.40
G3DSA:3.90.640.10\"[222-309]TG3DSA:3.90.640.10
PTHR19375:SF1\"[1-518]TPTHR19375:SF1
SSF100920\"[377-534]TSSF100920
SSF100934\"[528-606]TSSF100934
SSF53067\"[4-183]T\"[184-377]TSSF53067


","BeTs to 14 clades of COG0443COG name: Molecular chaperones (HSP70/DnaK family)Functional Class: OThe phylogenetic pattern of COG0443 is --t-YQvCEbRHujgpOlinXNumber of proteins in this genome belonging to this COG is 1","***** IPB001023 (Heat shock protein hsp70) with a combined E-value of 9.9e-216. IPB001023A 4-33 IPB001023B 47-79 IPB001023C 120-173 IPB001023D 198-241 IPB001023E 313-354 IPB001023F 382-426 IPB001023G 448-500 IPB001023D 182-225","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Mon Jan 5 15:18:05 2004","Wed Mar 22 11:18:43 MST 2000","Mon Jan 5 15:18:05 2004","Thu Dec 21 13:37:37 2000","Sun Jun 3 13:22:59 MDT 2001","Tue Apr 18 10:54:36 MDT 2000","yes","Fri Feb 20 15:41:32 MST 1998","PG1069 is similar to PG1227, a rod shape determining protein MREB/HSP70 sugar kinase.","Mon Jun 4 11:31:05 MDT 2001","Sun Jun 3 13:22:59 MDT 2001","-68% similar to PDB:1YUW crystal structure of bovine hsc70(aa1-554)E213A/D214A mutant (E_value = 2.4E_142);-77% similar to PDB:1DKG CRYSTAL STRUCTURE OF THE NUCLEOTIDE EXCHANGE FACTOR GRPE BOUND TO THE ATPASE DOMAIN OF THE MOLECULAR CHAPERONE DNAK (E_value = 4.1E_126);-66% similar to PDB:1HPM HOW POTASSIUM AFFECTS THE ACTIVITY OF THE MOLECULAR CHAPERONE HSC70. II. POTASSIUM BINDS SPECIFICALLY IN THE ATPASE ACTIVE SITE (E_value = 6.6E_92);-66% similar to PDB:1NGI STRUCTURAL BASIS OF THE 70-KILODALTON HEAT SHOCK COGNATE PROTEIN ATP HYDROLYTIC ACTIVITY, II. STRUCTURE OF THE ACTIVE SITE WITH ADP OR ATP BOUND TO WILD TYPE AND MUTANT ATPASE FRAGMENT (E_value = 6.6E_92);-66% similar to PDB:1NGJ STRUCTURAL BASIS OF THE 70-KILODALTON HEAT SHOCK COGNATE PROTEIN ATP HYDROLYTIC ACTIVITY, II. STRUCTURE OF THE ACTIVE SITE WITH ADP OR ATP BOUND TO WILD TYPE AND MUTANT ATPASE FRAGMENT (E_value = 6.6E_92);","","","Residues 2 to 384 (E-value = 9.9e-07) place PG1069 in the MreB_Mbl family which is described as MreB/Mbl protein (PF06723)","Sun Jun 3 13:22:59 MDT 2001","34540920","","Manch-Citron JN, Shahani PJ, Schneider R.Cloning, Characterization, and Possible Origin of the Prevotella loescheii dnaKHomolog.Curr Microbiol. 2001 Feb;42(2):82-8.PMID: 11136127","","Mon Jun 4 11:31:05 MDT 2001","","1","","","PG1208" "PG1070","1287588","1289135","1548","TTGATGACTACGTCCCTTTTCAACAACGATGACCTGAACCAACTGGAATCTAAAGGCATCACACCGGAAGAAGCAATGCGCCAGGTAGAAGCTCTCAGATATGGATTCCCGTATCCCAATATCATTGCACCTGCTTCATTAGAGAATGGAATCATGCGTTTGGATGAAGATGACAAATCCGCTTATCTGTTGGAATGGGACAGATATTTGAATAGTCCGAACTGCAACGTTGTCAAGTTTGTACCGGCATCCGGTGCTGCTTCGCGCATGTTCAAGGATTTGTACAACTTCCTTGATGCCGATTACAATGAGCCAACTACGGATGCAGAGAAGGCGTTCTTTGCACACCTTACTCGATTTGCATTCTATGACTCCCTTAACGAGACATGCCTGCGCAATGCTTGGCGCACAGTGCCCAAACTCATAGCTTCCAAAGAATACAAGACGGTGGTGGAGAATCTGCTCTATCCCAAAGGTCTTAACTATGGCAATCTTCCGAAAGGTTTGCTCCTCTTTCACCTCTATGGAAAAGAAACCAGAACTCCCACCGAAGAACATTTGGCCGAAGGAGCACTCTATGAGCGCAGCGGTACAAGACAGGTCAAGGTACATTTTACCGTTTCGCCCGAGCACATCGAAGAATTCAAAAACAACATAGATAAACGCCAACGTTTTTTGGAGGATGAATACTGTATCCGCTACGAGGTTTCATTCAGTGTGCAAGATTCATCTACCGACACATTGGCACTAACTCCGGAGGGCGAGCTATTCCGTCTCGAAAACGGAGAGCTTCTTTTCCGCCCGGGTGGCCACGGAGCACTCATTCGCAATCTTCAGGAGACAAATGCAGACATCGTTTTCATCAAGAATATCGACAATGTAGTCCCCGACTTTCTCAAGTGCGATACCATTATATATAAGAAGCTCATCGCCGGCGTACTGGTAAAAGCCAGAGAGCATATATTCAACTATCTCCAACTACTGGAAAAGCCCAAAGTCGTTCATGCCCAACTGATGGAGATCGTCGATTTCCTTCGGTACAATTTCTGCATTGAAATCTCGAATATAGACCTGATGGAGGATAAAGACCTCTTGGAACTGCTTCGTCGTAAATTAGACCGTCCGATACGTGTCTGCGGTATGGTGCGCAATCAGGGTGAACCCGGTGGGGGGCCTTTTATCATTCGCGAAGCAGACGGCAGTTCTTCCTTGCAAATACTGGAAAGTACTCAGATCGATATGTCCGATCCCCAAAAGAGAGCTATATTCGAACAAGGCTCCTATTTCAATCCTGTGGATTTGGTTTGCTCTTTGCGCGACTACAAAGGGGAACCGTTCAACCTCGAATCTTTCGTCAATCCCAAAACGGCCTTCATATCCGAAAAGAGCAAAGACGGACGTAAACTGCTCGCCCTTGAACGGCCGGGTCTGTGGAACGGGGCAATGGACGATTGGAATACAATATTTATAGAAGTGCCTATCAGCACATTTGCTCCGGTCAAGACGGTCAATGACCTCTTGCGACCTGAGCACCAACCCTGTCAGAGC","5.00","-15.15","59090","LMTTSLFNNDDLNQLESKGITPEEAMRQVEALRYGFPYPNIIAPASLENGIMRLDEDDKSAYLLEWDRYLNSPNCNVVKFVPASGAASRMFKDLYNFLDADYNEPTTDAEKAFFAHLTRFAFYDSLNETCLRNAWRTVPKLIASKEYKTVVENLLYPKGLNYGNLPKGLLLFHLYGKETRTPTEEHLAEGALYERSGTRQVKVHFTVSPEHIEEFKNNIDKRQRFLEDEYCIRYEVSFSVQDSSTDTLALTPEGELFRLENGELLFRPGGHGALIRNLQETNADIVFIKNIDNVVPDFLKCDTIIYKKLIAGVLVKAREHIFNYLQLLEKPKVVHAQLMEIVDFLRYNFCIEISNIDLMEDKDLLELLRRKLDRPIRVCGMVRNQGEPGGGPFIIREADGSSSLQILESTQIDMSDPQKRAIFEQGSYFNPVDLVCSLRDYKGEPFNLESFVNPKTAFISEKSKDGRKLLALERPGLWNGAMDDWNTIFIEVPISTFAPVKTVNDLLRPEHQPCQS","1287588 1289135","TIGR ID: PG1209","conserved hypothetical protein","Cytoplasm","This sequence corresponds to gi:34397236 in Genbank.Its nearest neighbor in the NR database is gi:53713456 from Bacteroides fragilis YCH46.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Dec 3 09:01:33 2003","Mon Mar 7 10:17:33 2005","Wed Feb 14 14:33:22 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Feb 14 14:33:22 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540921","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Mon Mar 7 10:17:33 2005","","1","","","PG1209" "PG1071","1289187","1290971","1785","ATGACAAACGATATCTTGCAGCGTCTTGCGTCTTTGCGCAAAGTCATGAGTCATGAGCATATCGATGCTTATATCATCCCGAGTTCGGATGCCCACCTAAGCGAATACACACCGGAACACTGGAAAGGTCGCCGTTGGATTTCCGGTTTCACCGGATCGGCCGGCACAGTAGTGGTCACAGCAAATAAGGCCGGACTATGGACGGACGGACGCTACTTCCTCCAAGCAGGCCAACAGCTCGAAGGCACTTCTATCGACCTCTACAAAGAAGGCATCCCCGGAACTCCCTCCATCGAACAGTTTCTTGCCGCCGAGCTGAAAGCCGGGCAAACAGTGGGTATAGATGGACGTTGCTTTCCGGCAGGTGCTGCCTCTGCAACCGAATCGGCTTTGGATATATACGGCATCAAACTAAGGACTGACAAGGATCTTTTCGATGAAGCATGGCGAGATCGTCCAGAAATCCCTCGTGGAGAGCTTTTCGTTCAGCCCGTGAAGTATGCAGGAGAAAGCGTGAAAGACAAGATCGCACGTGTCAATAAAGAACTGGCGACACAAGGTGCCAATGCCACTATTATCACCATGTTGGACGAATTGGCTTGGATATTCAATCTTCGTGGTAGAGATGTGGAGTGCAACCCCGTAGGAGTTGCTTTTGGTTATGTATCGGCTCGAGAATCTGTCCTCTTTGCTTTCCCTGAGAAGATTACTAAGGAGGTTCGCTCAGCTATGGAAGAAGGCGGGGTCAAGATTATGCCCTACGAAGCCATATATGAATATATCCCAGCACTACCTGCCGAAGAAAGGCTGCTTATCGACAAGAAACGCATTACACGCGCACTTTATGACCTTATACCGGCTGCTTGTCGGAAAATAGACGGTGTCAGCACAATTACAGCGTTGAAAGCTATCAAGAACGAGCAAGAGCTATCCGGTGTTCGTGCCGCTATGGTACGTGATGGCGTTGCCCTTACCCGATTCTTTATGTGGTTGGAACAGGAGTGGGAAGCCGGTCGCAACCATGACGAAGTGGTATTGGGTGAAAAGCTCACAGCATTCCGTACTGCTCAGCCCCTCTATTTCGGAGATAGTTTCGATACGATATGCGGCTATCAGGATCATGGTGCTATCATCCATTACCGCGCCACACCCGAATCCGCCCACGTAGTCAAACGAGAAGGTGTACTCCTCCTCGATAGCGGAGCACAGTATCATGATGGCACTACAGACATCACACGTACTGTCGCTTTGAGTACTCCATCGGCCGAACTCAAACGGAACTATACCCTTGTGATGAAAGGGCATATCGCTATTGCCACGGCACAATATCTGGAGGGTACGCGCGGTAGTCAGATCGATGTATTGGCACGCAAAGCCCTTTGGGACAATGGAATGAACTATGCTCATGGCACGGGACATGGCGTCGGTTGCTTCCTCAACGTCCATGAAGGGCCGCAGAATATTCGCATGGATGAGAATCCTACCGAAATGAAGATTGGAATGATTACGAGCAATGAACCGGGTCTTTATCGTTCCGGCAAATATGGTATCCGAATCGAAAACCTCGTAGTGACCAAGTTGAATGTAGAGACTGAATTCGGCCGATTCTTCGGATTCGAAACGCTGACGGCTTTCTATTTCGACAACGAACTCATCGAAAAAAGCTTGCTCACAGCAGATGAATTGAAGTGGTACAATGACTACCAGCAGTGGGTGTACAAGACGCTTGCTCCCGAACTGACTACCGAGGAAAGAGCTTGGCTCAAAGAGAAAACTCTGACTATC","5.60","-11.04","66573","MTNDILQRLASLRKVMSHEHIDAYIIPSSDAHLSEYTPEHWKGRRWISGFTGSAGTVVVTANKAGLWTDGRYFLQAGQQLEGTSIDLYKEGIPGTPSIEQFLAAELKAGQTVGIDGRCFPAGAASATESALDIYGIKLRTDKDLFDEAWRDRPEIPRGELFVQPVKYAGESVKDKIARVNKELATQGANATIITMLDELAWIFNLRGRDVECNPVGVAFGYVSARESVLFAFPEKITKEVRSAMEEGGVKIMPYEAIYEYIPALPAEERLLIDKKRITRALYDLIPAACRKIDGVSTITALKAIKNEQELSGVRAAMVRDGVALTRFFMWLEQEWEAGRNHDEVVLGEKLTAFRTAQPLYFGDSFDTICGYQDHGAIIHYRATPESAHVVKREGVLLLDSGAQYHDGTTDITRTVALSTPSAELKRNYTLVMKGHIAIATAQYLEGTRGSQIDVLARKALWDNGMNYAHGTGHGVGCFLNVHEGPQNIRMDENPTEMKIGMITSNEPGLYRSGKYGIRIENLVVTKLNVETEFGRFFGFETLTAFYFDNELIEKSLLTADELKWYNDYQQWVYKTLAPELTTEERAWLKEKTLTI","1289187 1290971","TIGR ID: PG1210","Xaa-Pro aminopeptidase","Cytoplasm, Extracellular","Numerous significant hits to aminopeptidase proteins in gapped BLAST; e.g. residues 3-592 are 39% similar to emb|CAB84868.1| putative aminopeptidase of Neisseria meningitidis Z2491, residues 7-595 are 37% similar to emb|CAB75289.1| putative aminopeptidase of Campylobacter jejuni, residues 9-592 are 38% similar to gb|AAB95331.1| cytoplasmic aminopeptidase P of Rattus norvegicus, residues 1-592 are 36% similar to gb|AAF93245.1| aminopeptidase P of Vibrio cholerae.This sequence is similar to BT2743.","
InterPro
IPR000587
Domain
Creatinase
PF01321\"[44-72]TCreatinase_N
InterPro
IPR000994
Domain
Peptidase M24, catalytic core
G3DSA:3.90.230.10\"[303-526]TPeptidase_M24_cat_core
PTHR10804\"[21-381]TPeptidase_M24_cat_core
PF00557\"[362-531]TPeptidase_M24
noIPR
unintegrated
unintegrated
PTHR10804:SF19\"[21-381]TPTHR10804:SF19
SSF52156\"[221-282]TSSF52156
SSF53092\"[7-149]TSSF53092
SSF55920\"[306-563]TSSF55920


","BeTs to 17 clades of COG0006COG name: Xaa-Pro aminopeptidaseFunctional Class: EThe phylogenetic pattern of COG0006 is amtKYqvcEBRhujgpolinxNumber of proteins in this genome belonging to this COG is 2","***** IPB001131 (Proline dipeptidase) with a combined E-value of 1.9e-10. IPB001131A 371-414 IPB001131B 469-481 IPB001131C 497-511 IPB001131D 516-529","Residues 304-483 are 48% similar to a (AMINOPEPTIDASE HYDROLASE PROTEIN METHIONINE PEPTIDASE) protein domain (PD000555) which is seen in O54975_RAT.Residues 143-267 are 32% similar to a (AMINOPEPTIDASE AMINOACYLPROLINE HYDROLASE) protein domain (PD008419) which is seen in O23206_ARATH.Residues 8-107 are 50% similar to a (AMINOPEPTIDASE HYDROLASE P) protein domain (PD004954) which is seen in O51094_BORBU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Fri Dec 19 09:54:35 2003","Fri Dec 19 09:54:35 2003","Wed Feb 14 14:48:13 MST 2001","Fri Feb 23 09:56:48 MST 2001","Wed Feb 14 14:48:13 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Feb 14 14:48:13 MST 2001","-48% similar to PDB:1WY2 Crystal Structure of the Prolidase from Pyrococcus horikoshii OT3 (E_value = 1.3E_17);-46% similar to PDB:1PV9 Prolidase from Pyrococcus furiosus (E_value = 3.8E_17);-49% similar to PDB:1WN1 Crystal Structure of Dipeptiase from Pyrococcus Horikoshii OT3 (E_value = 9.1E_11);","","","No significant hits to the Pfam 11.0 database","Fri Feb 23 09:56:48 MST 2001","34540922","","","","","","1","","","PG1210" "PG1072","1290944","1291519","576","TTGGCTCAAAGAGAAAACTCTGACTATCTAACCACAAAAATGGCATTAATACAGAGTGTTAGGGGCTTTACCCCTATAATCGGCGAGGATACCTTCCTCGCCGAAAATGCCACTATTGTAGGCGATGTAGTCATGGGCAAAGGCTGTAGTGTGTGGTTCAATGCCGTATTGCGAGGCGATGTCAATTCCATTCGGATCGGTGACAATGTCAATATCCAAGATGGATCCATACTGCATACGCTCTATCAAAAATCCACTATTGAAATCGGTGACAACGTATCTGTCGGGCACAATGTAGTCATCCACGGAGCTAAAATATGCGACTATGCCCTTATCGGTATGGGAGCCGTTGTGCTAGATCATGTAGTGGTTGGAGAAGGTGCTATCGTAGCAGCCGGTTCCGTAGTACTCACTGGCACACAGATAGAGCCGAACAGTATCTATGCCGGTGCTCCGGCGCGTTTTATCAAGAAAGTAGACCCCGAACAGAGTCGAGAAATGAATTTTCGCATTGCGCACAACTACCGGATGTATGCCTCATGGTTCAAAGACGAATCATCTGAAATAGATAACCCT","5.10","-5.89","20797","LAQRENSDYLTTKMALIQSVRGFTPIIGEDTFLAENATIVGDVVMGKGCSVWFNAVLRGDVNSIRIGDNVNIQDGSILHTLYQKSTIEIGDNVSVGHNVVIHGAKICDYALIGMGAVVLDHVVVGEGAIVAAGSVVLTGTQIEPNSIYAGAPARFIKKVDPEQSREMNFRIAHNYRMYASWFKDESSEIDNP","1290944 1291519 [Delay by 48 1376 76 0]","TIGR ID: PG1211","conserved hypothetical protein (possible carbonic anhydrase)","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 16-186 are 36% similar to emb|CAA14968.1| unknown of Rickettsia prowazekii, residues 14-178 are 36% similar to gb|AAC07543.1| hypothetical protein of Aquifex aeolicus, residues 24-163 are 38% similar to gb|AAG52641.1|AC079677_5 unknown protein of Arabidopsis thaliana.","
InterPro
IPR001451
Repeat
Bacterial transferase hexapeptide repeat
PF00132\"[24-41]T\"[42-59]T\"[63-80]T\"[86-103]T\"[109-126]T\"[127-144]THexapep
noIPR
unintegrated
unintegrated
G3DSA:2.160.10.10\"[3-174]Tno description
PTHR13061\"[26-189]TDYNACTIN SUBUNIT P25


","BeTs to 9 clades of COG0663COG name: Carbonic anhydrases/acetyltransferases, isoleucine patch superfamilyFunctional Class: RThe phylogenetic pattern of COG0663 is -mtk-q-CEbr---------xNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 52-157 are 39% similar to a (TRANSFERASE ACYLTRANSFERASE PROTEIN REPEAT BIOSYNTHESIS) protein domain (PD000343) which is seen in Q9ZD31_RICPR.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu May 31 14:39:12 MDT 2001","Wed Feb 14 14:57:59 MST 2001","Wed Feb 14 14:57:59 MST 2001","","Wed Feb 14 14:57:59 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Feb 14 14:57:59 MST 2001","-54% similar to PDB:1XHD X-ray crystal structure of putative acetyltransferase, product of BC4754 gene [Bacillus cereus] (E_value = 1.6E_24);-56% similar to PDB:1V3W Structure of Ferripyochelin binding protein from Pyrococcus horikoshii OT3 (E_value = 4.3E_22);-56% similar to PDB:1V67 Structure of ferripyochelin binding protein from pyrococcus horikoshii OT3 (E_value = 4.3E_22);-56% similar to PDB:2FKO Structure of PH1591 from Pyrococcus horikoshii OT3 (E_value = 4.3E_22);","","","No significant hits to the Pfam 11.0 database","Thu May 31 14:39:12 MDT 2001","34540923","","","","","","1","","","PG1211" "PG1073","1291535","1292545","1011","ATGAAGAAATTATTGAGAAACCTCTTTGGTTCCGGCCGTGAAGAAGAGAAAAGGAGTGCTTCTGACGCTATGTCCGGGAGGGAACAAATAGTTACAAATTCTGAAAAAAGTAATCTGTCGACCGATCCGGACCATGTAAATCGTCAGGCCGATACACTTAAGTTCGATGCCATTCGGGCGATGAATATGGGAGAACTGGTCTTTGCCACAGAGGCCTTGCGCAAGGCAATGGAACTACGTCCCGAGTTTGAGACCCGTTATTATCTGACTGAAGCATTGCTTCGACGCCATCTCACGGAAGAAGCGTTGGCTCAGATGAATTTACTCCTTGAGGAAGTTCCGATGCATACAGCAACCCTGCTCAACCGTGCTAAGTTGAGGTTAGAACAAAATGATCCGTCCCGAGCACTTGAGGACTGTGGTACCGGTATCGAATCTACATCCGAATTGGAGGAACAAGCTCTTTTCCTCTATTACGGAGCCTCCGCCATGAAGGACATGAAAAACCTCAAAGATGCCCTTTGCCTGCTCAAACAGGCCATCGAAAAAAATGATGCCTTCATTCCGGCCAGACTCCTTCGAGCGCGCATACTCATTGACTTGGAGCGCTATGAAGAAGCCACCCAGGATTTGGATTGGGTGGCAGCATCCGATCCGGAAGAGGAACAGGTGCCTATGCTCCGCGCCCGCCTTTTCATGCTTGAAGGAAAGCAGCAAAATGCCATACAGGCATACGAAGAATTGCTAAGTCTCGATCCCTTCAACGAAGAAGGTCACTGCGGTATTGCTACACTCATGATCAAAGAAGGACGATCAGCCGAAGCAGAAACATTTCTGCGCGAAGCTATCGAAGAGATGCCGGTTCAGCGCAATCTGATTCTGATGCTCGTCGAAATATTGGAGAATAAAGGACAAACGCAGGAAGCAGCAGAATGGCGTGCCAAACTACCGGAAGCAGAGGTGGAAAGCGAAGCGGTTAATTTCAATGATCTTTACAAGGGTAACCTCTAT","4.60","-21.12","38480","MKKLLRNLFGSGREEEKRSASDAMSGREQIVTNSEKSNLSTDPDHVNRQADTLKFDAIRAMNMGELVFATEALRKAMELRPEFETRYYLTEALLRRHLTEEALAQMNLLLEEVPMHTATLLNRAKLRLEQNDPSRALEDCGTGIESTSELEEQALFLYYGASAMKDMKNLKDALCLLKQAIEKNDAFIPARLLRARILIDLERYEEATQDLDWVAASDPEEEQVPMLRARLFMLEGKQQNAIQAYEELLSLDPFNEEGHCGIATLMIKEGRSAEAETFLREAIEEMPVQRNLILMLVEILENKGQTQEAAEWRAKLPEAEVESEAVNFNDLYKGNLY","1291535 1292545","TIGR ID: PG1212","hypothetical protein","Cytoplasm, Outer membrane","No significant hits found in gapped BLAST.","
InterPro
IPR001440
Repeat
Tetratricopeptide TPR_1
PF00515\"[50-83]T\"[188-221]T\"[222-255]TTPR_1
InterPro
IPR002110
Repeat
Ankyrin
PR01415\"[111-123]T\"[259-271]TANKYRIN
InterPro
IPR011990
Domain
Tetratricopeptide-like helical
G3DSA:1.25.40.10\"[50-318]TTPR-like_helical
InterPro
IPR013026
Domain
Tetratricopeptide region
SM00028\"[50-83]T\"[117-150]T\"[188-221]T\"[222-255]T\"[256-289]TTPR
PS50005\"[50-83]T\"[188-221]T\"[222-255]T\"[256-289]TTPR
PS50293\"[50-83]T\"[83-323]TTPR_REGION
noIPR
unintegrated
unintegrated
PTHR23083\"[44-329]TPTHR23083
SSF48452\"[48-328]TSSF48452


","BeTs to 8 clades of COG0457COG name: TPR-repeat-containing proteinsFunctional Class: RThe phylogenetic pattern of COG0457 is AMTKYQVCEB-HUJ--OLINXNumber of proteins in this genome belonging to this COG is 21","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Feb 14 15:17:56 MST 2001","Wed Feb 14 15:17:56 MST 2001","Wed Feb 14 15:10:21 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 57-243 are 26% similar to PG1718, a conserved hypothetical protein (possible O-linked-GlcNAc transferase homolog).","Mon Jun 4 11:33:47 MDT 2001","Wed Feb 14 15:10:21 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jun 4 11:33:47 MDT 2001","34540924","","","","","","1","","","PG1212" "PG1074","1292576","1293223","648","ATGGCAAAGAAGTGGTATGTGGTCTGGACCGGGCATACACCCGGAGTTTATGATAATTGGGATGAATGTCGAGCGCAAACAGAGGGATTCAATAAAGCCCGCTACAAAAGCTTTGCTACCGAAAGCGATGCCCTAAGAGCCTATGAAGACGGAGCAGATGAATTCTACCGCAGAGCATACGGATCCACTGGTACGCACGGAGCAGACAAGCATCCGGATATGGAGACTTTACCCCGAACAAGTCCTATCTGGGAGAGCCTTTCAGTGGATGCAGCCTGTAGTGGCAATCCCGGCCCGATGGAGTATCGGGGTGTACTGACAGCATCCAAGGCCGAAGTCTTTCGCGTAGGCCCTCTGGAAGGAGGTACGAACAATATCGGAGAGTTTCTGGCCATTGTTCATGCCTTGGCTCTTCTGGAGAAAATGAAGAGACCTCACTACCCTATCTATTCGGATAGCATGACGGCTATCAGCTGGGTTCGAAAGAAAAAATGCAAAACCCTTCTCGCTCGTACAGATAAAAACGCAGCGATCTTCGACCTCATAGAGCGTGCAGAGCATTGGCTCTCTACTCATCGGATTACCAACCCTATATATAAATGGAATACTGTCGACTGGATGGAGATACCGGCCGACTTCGGACGGAAA","8.00","2.55","24539","MAKKWYVVWTGHTPGVYDNWDECRAQTEGFNKARYKSFATESDALRAYEDGADEFYRRAYGSTGTHGADKHPDMETLPRTSPIWESLSVDAACSGNPGPMEYRGVLTASKAEVFRVGPLEGGTNNIGEFLAIVHALALLEKMKRPHYPIYSDSMTAISWVRKKKCKTLLARTDKNAAIFDLIERAEHWLSTHRITNPIYKWNTVDWMEIPADFGRK","1292576 1293223","TIGR ID: PG1213","ribonuclease H-related protein","Cytoplasm, Periplasm","One significant hit and several weak hits to ribonuclease H-related proteins in gapped BLAST; e.g. residues 1-216 are 44% similar to dbj|BAB04582.1| ribonuclease H-related protein of Bacillus halodurans, residues 1-54 are 46% similar to gb|AAD36370.1|AE001785_1 ribonuclease H-related protein of Thermotoga maritima, residues 3-96 are 37% similar to gb|AAC47537.1| ribonuclease H1 of Trypanosoma brucei.","
InterPro
IPR002156
Domain
Ribonuclease H
PS50879\"[41-216]TRNASE_H
InterPro
IPR009027
Domain
Ribosomal protein L9 N-terminal-like
SSF55658\"[3-49]TL9_N_like
InterPro
IPR010916
Domain
TonB box, N-terminal
PS00430\"[1-92]?TONB_DEPENDENT_REC_1
InterPro
IPR012337
Domain
Polynucleotidyl transferase, Ribonuclease H fold
SSF53098\"[82-213]TRNaseH_fold
noIPR
unintegrated
unintegrated
G3DSA:3.30.420.10\"[87-162]TG3DSA:3.30.420.10
G3DSA:3.40.970.10\"[3-49]TG3DSA:3.40.970.10
PTHR10642\"[84-195]TPTHR10642


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Fri Feb 23 10:07:05 MST 2001","Wed Feb 14 15:33:14 MST 2001","Wed Feb 14 15:33:14 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Feb 14 15:33:14 MST 2001","-66% similar to PDB:1ZBF Crystal structure of B. halodurans RNase H catalytic domain mutant D132N (E_value = 1.5E_34);-66% similar to PDB:1ZBI Bacillus halodurans RNase H catalytic domain mutant D132N in complex with 12-mer RNA/DNA hybrid (E_value = 1.5E_34);-66% similar to PDB:2G8H B. halodurans RNase H catalytic domain D192N mutant in complex with Mg2+ and RNA/DNA hybrid (non-P nick at the active site) (E_value = 1.5E_34);-66% similar to PDB:2G8I B. halodurans RNase H catalytic domain D192N mutant in complex with Mn2+ and RNA/DNA hybrid (non-P nick at the active site) (E_value = 1.5E_34);-66% similar to PDB:2G8K B. halodurans RNase H catalytic domain D192N mutant in complex with Ca2+ and RNA/DNA hybrid (non-P nick at the active site) (E_value = 1.5E_34);","","","No significant hits to the Pfam 11.0 database","Mon May 7 16:38:25 MDT 2001","34540925","","","","","","1","","","PG1213" "PG1075","1293175","1294410","1236","ATGGAATACTGTCGACTGGATGGAGATACCGGCCGACTTCGGACGGAAATAAAGCATCCGCGCCTCTTGCTCTTCAACCCCGGTCACGAGATGGTACCGGAGATCATAGGGAAGAAGCCCTACGTACCACCACCCGTAGTACGAAGCATGATGCGCGATTTGGGTCTCCTGCCGGCCTGGCTGACAAAGAGCGAACAGGACTTTGTATTCTGTCCTGAAAAAACCCTCCCTATCCCCGACACGCATCCGCTCAAACCTGAAGCCCGGCTGCTGCAAATCCCCGACACTGCCCTTCCCTTGAATGATTATACCTTGGATATGTGGGGACAGTCGCCCGTTTGGTTGGCTGCTCTTCAGCATCGTTTTCTTTGGCTGTCCACTGTCTCAGCCCCGTACTATCCACACGAGCTGTATGAACGCAGTCATCGTTGCGAAGCCGCACGCTGTCTCGAAGCGATCGGACACAGTGAAATGGCTGCTCATTGGTTCACATCCATCAATGATTTTCTGAAGGAAAGGTATCATTGCTTTCCTCCTGACTCAGCTCTATTGGCCAAATTACCTTCCAGTTCATCCGGACGGGGACTGATTTGGCTAAGTTCCTCCCCTACCGACGATGAAATCGACCTGCTGACCAAGGCCCTCCGACGCGCCGGTTCTTTCAGCGTGGAGCCTGTATTGGATGTCCGTCAGGACTGGGCGGCCGAGTTTTATTCGAATGGAAAAGGCGAGCTTTACTTCGTTGGATGGTCTCGTTTCGATACTAACAGGTGGGGAGCCTATCTGGGCAATCGACTTGCCACCCAAACCGATTTGGTTGCCGAACTGACCCAAACGGTCGGGGCACAAGCACATGAAGAGGCTATTGCATCTGTGAAAGATTATCTACGAGAACGCTTCGCCTCACTGTACACCGGCTATATCGGAGTAGACATGGCAGTATATGCCGAAAGAGACAGTCTGTTTCTGCATCCTTGTATCGAGATCAATGTACGATACACAATGGGGGTGGCAGCTATCCTGCTTTACGACCTTTGGATAGAGAAAGGTCGAAGAGGTGTGTTCGAAGTTAAGGGTTTTCGAACCGAAGGCGAAGCACACGAATGGGATTCAATGATGCAGTGCAGCCATCCTCCCCTTATCATGGATGGCAGGCTTCGTGCCGGCTACCTTCCCCTCACCATTACCGACCGATCGAGCCGATTCCTTGCCTATCTTCTGATCACAGAAGATAGA","6.10","-7.17","47065","MEYCRLDGDTGRLRTEIKHPRLLLFNPGHEMVPEIIGKKPYVPPPVVRSMMRDLGLLPAWLTKSEQDFVFCPEKTLPIPDTHPLKPEARLLQIPDTALPLNDYTLDMWGQSPVWLAALQHRFLWLSTVSAPYYPHELYERSHRCEAARCLEAIGHSEMAAHWFTSINDFLKERYHCFPPDSALLAKLPSSSSGRGLIWLSSSPTDDEIDLLTKALRRAGSFSVEPVLDVRQDWAAEFYSNGKGELYFVGWSRFDTNRWGAYLGNRLATQTDLVAELTQTVGAQAHEEAIASVKDYLRERFASLYTGYIGVDMAVYAERDSLFLHPCIEINVRYTMGVAAILLYDLWIEKGRRGVFEVKGFRTEGEAHEWDSMMQCSHPPLIMDGRLRAGYLPLTITDRSSRFLAYLLITEDR","1293175 1294410","TIGR ID: PG1214","hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Feb 20 10:15:51 MST 2001","","Wed Feb 14 15:36:23 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Feb 14 15:36:23 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Feb 20 10:15:51 MST 2001","34540926","","","","","","1","","","PG1214" "PG1076","1294764","1295573","810","ATGACAAGCAGAAAGCTCATTTTTTTCGCCGCACTGACGTTCCTTTTTGCATCCTGCGGAGAGTTTGTAAGGATACAGCAAAGCCCCGATGCATCCCTCAAGTATTCGTATGCCAAGAAGTTCTACAACGAACGGAAGTACAGCAAAGCAGCTTCTCTATTAGAGGACGTACGAGGCATATATGACGGCACGAGCGAAGGTGAGCAGCTGATGTTTCTGTTGGCAGAATGCTATTTAGAGATGAGACGCGATGCCGATGCCGGCATCTGCTATCAAGAGTACTACAACAAATACCCCAAAGGATTGCGCGCCGAAGAAGCTCGTTACAAAGCCGGATATTGCTTCTACGAAGCATCGCCTGATTCGCGACTGGATCAGTCGGACACGTACCTGGCCATTCAGGAATTACAGTCTTATCTCGACTTTTTCCCCAATGGCAAATATGCCAAAGAAGCCGAGAATATGCTGTTCGGTTTGCAGGACAAGTTGGCCTACAAGGAATACAGGACGGCCAAGCTCTACTACAACCTCGGCTTGTATTTGGGCAATAACTACCGTTCTTGCATCGTGACAGCAGAGGCTGCATTGAAGACTTATCCATACACCAAGCATCGCGAAGAGCTGGTCTTCCTGATGCTTCAGGCTATGTACGAAGAGGCCTCTTTCAGCGTCAGTGAAAAGTTGCAAACGCGTTACCGTGATGTAGCGGACCAGTACTTTGCCTACATCAACGAATTTCCCAACGGGAAATACCTCAAGCAAGCCAAAAAGATCTACGACAGCGTCAGCAAGCATATCTCACAAGACGCT","7.20","0.26","31538","MTSRKLIFFAALTFLFASCGEFVRIQQSPDASLKYSYAKKFYNERKYSKAASLLEDVRGIYDGTSEGEQLMFLLAECYLEMRRDADAGICYQEYYNKYPKGLRAEEARYKAGYCFYEASPDSRLDQSDTYLAIQELQSYLDFFPNGKYAKEAENMLFGLQDKLAYKEYRTAKLYYNLGLYLGNNYRSCIVTAEAALKTYPYTKHREELVFLMLQAMYEEASFSVSEKLQTRYRDVADQYFAYINEFPNGKYLKQAKKIYDSVSKHISQDA","1294764 1295573","TIGR ID: PG1215","conserved hypothetical protein, with TPR repeats","Periplasm, Outer membrane, Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
noIPR
unintegrated
unintegrated
PS51257\"[1-19]TPROKAR_LIPOPROTEIN
SSF48452\"[27-200]TSSF48452


","BeTs to 4 clades of COG0457COG name: TPR-repeat-containing proteinsFunctional Class: RThe phylogenetic pattern of COG0457 is AMTKYQVCEB-HUJ--OLINXNumber of proteins in this genome belonging to this COG is 21","No significant hit to the Blocks database.","Residues 37-172 are 26% similar to a (PROTEIN REPEAT TPR DOMAIN NUCLEAR PUTATIVE RECEPTOR) protein domain (PD000069) which is seen in O67310_AQUAE.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Fri Sep 10 16:40:39 2004","","Wed Feb 14 15:38:08 MST 2001","","Wed Feb 14 15:38:08 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Sep 10 16:40:39 2004","-38% similar to PDB:1SGO NMR Structure of the human C14orf129 gene product, HSPC210. Northeast Structural Genomics target HR969. (E_value = );","","","Residues 2 to 233 (E-value = 5.2e-06) place PG1076 in the UPF0169 family which is described as Uncharacterised protein family (UPF0169) (PF03696)","","34540927","","","","","","1","","","PG1215" "PG1077","1295718","1296047","330","ATGGAGCTTAAGAAAATGAATGTCCCCATGGACACCATTACACGTGACATGGTGCGTCTGAGCGAAGACACGGAGAACGTGTACGAGACAGTGATGATCATAGCCAAGCGTGCCAATCAAATCGGGCAGCAAATGAAACAGGATCTGGAAAAGAAACTTCAGGACTTCTCTTCTTCAAATGACAATCTGGAGGAAGTTTTCGAAAATCGTGAGCAGATCGAGATCTCGCGCTACTATGAGCATCTGCCCAAGCCCGGTCTGATAGCTACGGCAGAATATGAGCAGGACAAGCTCTACTACCGTATGCCCGGAGCAACATCCACAAACGAC","4.50","-6.76","12926","MELKKMNVPMDTITRDMVRLSEDTENVYETVMIIAKRANQIGQQMKQDLEKKLQDFSSSNDNLEEVFENREQIEISRYYEHLPKPGLIATAEYEQDKLYYRMPGATSTND","1295718 1296047","TIGR ID: PG1217","hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR003716
Family
RNA polymerase, omega subunit
SSF63562\"[12-79]TRNA_pol_omega


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Feb 14 15:40:42 MST 2001","","Wed Feb 14 15:40:42 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Feb 14 15:40:42 MST 2001","-46% similar to PDB:2DYY Crystal structure of putative translation initiation inhibitor PH0854 from Pyrococcus horikoshii (E_value = );-53% similar to PDB:2CPM Solution structure of the R3H domain of human sperm-associated antigen 7 (E_value = );-53% similar to PDB:2F95 M intermediate structure of sensory rhodopsin II/transducer complex in combination with the ground state structure (E_value = );-46% similar to PDB:1B12 CRYSTAL STRUCTURE OF TYPE 1 SIGNAL PEPTIDASE FROM ESCHERICHIA COLI IN COMPLEX WITH A BETA-LACTAM INHIBITOR (E_value = );-46% similar to PDB:1KN9 CRYSTAL STRUCTURE OF A BACTERIAL SIGNAL PEPTIDASE APO-ENZYME, IMPLICATIONS FOR SIGNAL PEPTIDE BINDING AND THE SER-LYS DYAD MECHANISM. (E_value = );","","","No significant hits to the Pfam 11.0 database","","34540929","","","","","","1","","","PG1217" "PG1078","1296080","1296535","456","ATGTGGCAGAGAATTCAGACACTTTGGCTCCTGCTCGCAGGTATAGCCATGACGGTGCTTCTATTCAAACCGATAGGGCTTTTGATAGGGCCGGAAGGACAAGGATACGCGATGAACATATTAGGACTATATGCACCGGCTACCAATGCGCTGGTCAAGTCCACTTGGGGTCTTTTTGCTCTTGATGCCATTATCGTACTGATCTCGTTTGCTACCATCTTCCTCTACAAAAAGCGAATCTTGCAGATCAGACTATGTATCTTCAATATCCTCGTCACGATAGGTTTTCTTATCTATCTGGGGATGCAGATTTGGCAGATATGCTCGGCTGAGAACTTGGAGTTCGGATTCCGTTTTTGGCTCTGCATGCCGATAGTCTCCATCATCCTGCACTATCTGGCCATTCGTGGCATAGGAGCGGATGAAGCCATGATACGGGCAGCCGAACGCCTGCGA","10.00","5.08","17192","MWQRIQTLWLLLAGIAMTVLLFKPIGLLIGPEGQGYAMNILGLYAPATNALVKSTWGLFALDAIIVLISFATIFLYKKRILQIRLCIFNILVTIGFLIYLGMQIWQICSAENLEFGFRFWLCMPIVSIILHYLAIRGIGADEAMIRAAERLR","1296080 1296535","TIGR ID: PG1218","conserved hypothetical protein","Inner membrane, Cytoplasm","This sequence corresponds to gi:34397245 in Genbank.Its nearest neighbor in the NR database is gi:53713907 from Bacteroides fragilis YCH46.","
noIPR
unintegrated
unintegrated
signalp\"[1-18]?signal-peptide
tmhmm\"[9-29]?\"[56-76]?\"[85-105]?\"[115-135]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Fri Sep 10 14:21:58 2004","Mon Mar 7 10:20:04 2005","Wed Feb 14 15:42:48 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Feb 14 15:42:48 MST 2001","-52% similar to PDB:1XHB The Crystal Structure of UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferase-T1 (E_value = );-45% similar to PDB:1UAZ Crystal structure of archaerhodopsin-1 (E_value = );-50% similar to PDB:2FFU Crystal Structure of Human ppGalNAcT-2 complexed with UDP and EA2 (E_value = );-50% similar to PDB:2FFV Human ppGalNAcT-2 complexed with manganese and UDP (E_value = );","","","No significant hits to the Pfam 11.0 database","","34540930","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Mon Mar 7 10:20:04 2005","","1","","","PG1218" "PG1079","1296814","1297122","309","ATGGAAAACGAAAGCAAAACAATCAACATCGAACTGCCCGAAGAAATAGCTCAGGGCAACTACTGCAATCTCTGTATCGTGATGCACTCTCCGAGCGAATTTGTCTTGGACTTCATCCGTATGGTTCCGAATCGTGACACCGCACGAGTCCAAAATCGCATCATCCTGACTCCGGACAATGCCAAAAGACTTTTGACCACTCTCTCGGACAATATCCATCGCTACGAAGTGGAACACGGCGAGATCCACACCGAGCAACGCGTATCGGATGCCACATTTACATTCCCAACCAAAATAAAAGGCGAAGCC","5.30","-4.14","11840","MENESKTINIELPEEIAQGNYCNLCIVMHSPSEFVLDFIRMVPNRDTARVQNRIILTPDNAKRLLTTLSDNIHRYEVEHGEIHTEQRVSDATFTFPTKIKGEA","1296814 1297122 [Shorter 1387 258 99]","TIGR ID: PG1219","conserved hypothetical protein","Cytoplasm","This sequence corresponds to gi:34397246 in Genbank.Its nearest neighbor in the NR database is gi:48855326 from Cytophaga hutchinsonii.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon Mar 7 10:27:23 2005","Mon Mar 7 10:27:23 2005","Wed Feb 14 15:46:04 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Feb 14 15:46:04 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540931","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Mon Mar 7 10:27:23 2005","","1","","","PG1219" "PG1080","1297071","1296715","357","TTGCTCGGTGTGGATCTCGCCGTGTTCCACTTCGTAGCGATGGATATTGTCCGAGAGAGTGGTCAAAAGTCTTTTGGCATTGTCCGGAGTCAGGATGATGCGATTTTGGACTCGTGCGGTGTCACGATTCGGAACCATACGGATGAAGTCCAAGACAAATTCGCTCGGAGAGTGCATCACGATACAGAGATTGCAGTAGTTGCCCTGAGCTATTTCTTCGGGCAGTTCGATGTTGATTGTTTTGCTTTCGTTTTCCATTTGTTCTTGAATGTTTTAATAAGTAGTATGAGGGAAAGTGCCAAGCTGAATAACGTATGGCACCGTTACCCCCTTTTGAACAAAGTTACTCCTTTCGTC","6.50","-1.67","13587","LLGVDLAVFHFVAMDIVRESGQKSFGIVRSQDDAILDSCGVTIRNHTDEVQDKFARRVHHDTEIAVVALSYFFGQFDVDCFAFVFHLFLNVLISSMRESAKLNNVWHRYPLLNKVTPFV","1297071 1296715 [Bad Olap 1386 258 0]","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No hit found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Feb 14 15:47:58 MST 2001","","Wed Feb 14 15:47:58 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Feb 14 15:47:58 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG1081","1297129","1298259","1131","ATGCTTTCCTCTCTATCCGGTCCTCTCAAAATAGTGGCAGAAGCATCCGTGCCCTATTTGAGAGGTATTGTCGATCCTGTTGCGGACATTACTTACCTACACTCGGACTGCTTCTCTCCCGATACGATACGTCATGCCCGGGTGCTGATCGTCCGCAGTATCACCAAGTGCACACCGGCTCTTCTGCAAGGTACTGATGTGCGGTTGATAACGACTGCCACGGCCGGATTCGACCACATCGACCGCGAATACTGCGAAAGCCACGGTATCCTCTGGCGCAATTCCCCCGGCTGCAATGCTACGGCCGTAGCGCAGTATGTAATGTGCTGCCTGTGTCGTCTGGCTTTGCGCGAGGGTTTTTCCCTGAAAGAGAAGGTAATGGGTATAGTGGGTGTAGGCCATGTAGGCGGTGAGCTGAAGCGTTTGGCCTCCGCCTATGGCATGGAGTTCCTGCTCTGCGATCCACCTCGGTCGGAGGCAGAGCAGGACAATAGCTTTCTTCCTCTAAGCCGACTGGTGGAGCAGTGCGACATTATCTCATTCCACGTTCCCCTCACCCATGAAGACCCTCACGCCACCTATCACCTCATCGGTGAGGCTTTTCTACGCAGCTGTGCAGACAAAAGGCCTATCCTGATCAATGCCTGCCGAGGAGCCGTAGCGGATACCCAAGCTCTTATTCGGGCTGTCAAAAGCGGATGGCTCCAAGCCCTCGTAATAGATTGCTGGGAAGGAGAACCCGATATAGACCTCAGCCTGTTGGATTTGGCAGACATCGCGACTCCTCACATAGCAGGATTCTCTGCAGACGGAAAAGCCAATGGAGCCAGAATGTGCCTTGAAGCCATTACGGAAGTATTCGGACTGGAATTTCCCCTGCTGCATACTTTAGCCCCTCCCCCACCGACTCATCCCATCATAGATCTGTCGCTCTTCCCCGACCATCGTATCGAAAGGGCTTTGCTGCATACCTTCGATCCGCTCGTACCGGATCGATCGCTAAGGGCATCGCCGAAGACATTCGAAGAACAACGCAAAGCCTACCCGCACCCACGTGAGATGAAGGCTTTCACTGTCGTAGGAGCTACGACAGAAGAAGCGAAAATTCTTCGTGGGATGGACTTCATTTCA","6.10","-7.99","41411","MLSSLSGPLKIVAEASVPYLRGIVDPVADITYLHSDCFSPDTIRHARVLIVRSITKCTPALLQGTDVRLITTATAGFDHIDREYCESHGILWRNSPGCNATAVAQYVMCCLCRLALREGFSLKEKVMGIVGVGHVGGELKRLASAYGMEFLLCDPPRSEAEQDNSFLPLSRLVEQCDIISFHVPLTHEDPHATYHLIGEAFLRSCADKRPILINACRGAVADTQALIRAVKSGWLQALVIDCWEGEPDIDLSLLDLADIATPHIAGFSADGKANGARMCLEAITEVFGLEFPLLHTLAPPPPTHPIIDLSLFPDHRIERALLHTFDPLVPDRSLRASPKTFEEQRKAYPHPREMKAFTVVGATTEEAKILRGMDFIS","1297129 1298259","TIGR ID: PG1220","erythronate-4-phosphate dehydrogenase","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 9-375 are 32% similar to gbAAG57449.1AE005463_12 erythronate-4-phosphate dehyrogenase of Escherichia coli O157:H7, residues 9-375 are 32% similar to gbAAC75380.1 erythronate-4-phosphate dehyrogenase of Escherichia coli K12, residues 9-373 are 31% similar to gbAAG04764.1AE004567_3 erythronate-4-phosphate dehydrogenase of Pseudomonas aeruginosa.","
InterPro
IPR000977
Family
ATP-dependent DNA ligase
PS00697\"[270-278]FDNA_LIGASE_A1
InterPro
IPR006139
Domain
D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region
PF00389\"[46-287]T2-Hacid_dh
InterPro
IPR006140
Domain
D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
PF02826\"[119-265]T2-Hacid_dh_C
PS00065\"[127-154]TD_2_HYDROXYACID_DH_1
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.720\"[100-265]TG3DSA:3.40.50.720
PTHR10996\"[11-375]TPTHR10996
PTHR10996:SF4\"[11-375]TPTHR10996:SF4
SSF51735\"[99-266]TSSF51735
SSF52283\"[9-117]TSSF52283


","BeTs to 3 clades of COG1052COG name: Lactate dehydrogenase and related dehydrogenasesFunctional Class: C,H,RThe phylogenetic pattern of COG1052 is a--KYq-CEBrHuj---l---Number of proteins in this genome belonging to this COG is 2","***** IPB002162 (D-isomer specific 2-hydroxyacid dehydrogenase) with a combined E-value of 3.1e-13. IPB002162B 124-136 IPB002162C 192-243 IPB002162D 252-271","Residues 76-247 are 41% similar to a (NAD DEHYDROGENASE OXIDOREDUCTASE PROTEIN) protein domain (PD000699) which is seen in PDXB_ECOLI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Fri Feb 23 10:14:48 MST 2001","Mon Jul 21 20:11:28 2008","Wed Feb 14 16:43:47 MST 2001","Fri Feb 23 10:14:48 MST 2001","Wed Feb 14 16:43:47 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 63-272 are 31% similar to PG1898, a dehydrogenase protein (probable glycerate dehydrogenase). Similarities are also seen to PG1127 and PG1060, dehydrogenase proteins.","Mon Jun 4 11:37:42 MDT 2001","Mon Jul 21 20:11:28 2008","-45% similar to PDB:2O4C Crystal Structure of D-Erythronate-4-phosphate Dehydrogenase Complexed with NAD (E_value = 2.5E_45);-46% similar to PDB:1WWK Crystal structure of phosphoglycerate dehydrogenase from Pyrococcus horikoshii OT3 (E_value = 6.7E_22);-37% similar to PDB:2DBQ Crystal Structure of Glyoxylate Reductase (PH0597) from Pyrococcus horikoshii OT3, Complexed with NADP (I41) (E_value = 3.0E_14);-37% similar to PDB:2DBR Crystal Structure of Glyoxylate Reductase (PH0597) from Pyrococcus horikoshii OT3, Complexed with NADP (P1) (E_value = 3.0E_14);-37% similar to PDB:2DBZ Crystal Structure of Glyoxylate Reductase (PH0597) from Pyrococcus horikoshii OT3, Complexed with NADP (P61) (E_value = 3.0E_14);","","","Residues 11 to 97 (E-value = 3.9e-08) place PG1081 in the 2-Hacid_dh family which is described as D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain (PF00389)Residues 103 to 263 (E-value = 2.2e-33) place PG1081 in the 2-Hacid_dh_C family which is described as D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain (PF02826)","Mon Jul 21 20:11:28 2008","34540932","","","Schoenlein,P.V., Roa,B.B. and Winkler,M.E. 1989. Divergent transcription of pdxB and homology between the pdxB and serA gene products in Escherichia coli K-12. J. Bacteriol. 171: 6084-6092. PubMed: 2681152.","","Wed Feb 14 17:03:26 MST 2001","1","","","PG1220" "PG1082","1298272","1298994","723","ATGGAAGCCAAACGAATCGTTGTCGTAGGAGCCACCTCTGGCATCGGGCTTGATGTAGCCCGCCTATTTATCTCTCGCGGTTGGTTCGTAGGTGTTGCCGGCCGCAATACCCAAATGCTCGATGCATTGAAGCAGGAGAATCCCTCACAGGTTTATACAGCCGTAATAGACATCACGCATTCCGATGCTCCTGAACGGCTGTCCCACCTCATCGAAGAAATGAGCGGTATGGATGTATACTTCCACTCGTCCGGTATCGGTTATAACAATCCGCAACTGGACGAAACGAAAGAGCTGGACACCCTCCGTACCAATGGAGAAGGATTTACCCGAATGATCGGTGCCGCCTACCGCTATTTTCGCCTTCGGAAAAAGGGTCAAATAGTAGCCATCAGTTCGGTAGCAGCAACAAGAGGAATGGGATCCGCTCCTGCCTACTCCGCCACCAAACGCTTCCAAATGCACTATCTCCAATCCATACGCCAATTGGCCACGACAGACAGCCTACACCTGACCGTTACGGAGATTCGTCCCGGATTTGTCGATACCCCCCTGCTACGAGACGGTAAGTATCCAATGCTGATGGAGTCCAAGATAGTTGCCCAAGCAATAGTAAAGGCTGTCATCCGTCGAAAAAGACTGCTGACTTTCGACTGGCGCTATCGTTTACTGGTCGCTTTCTGGCGTATGATCCCCGTTCGAATATGGGAGAAAACAAGAGTA","10.90","13.20","27329","MEAKRIVVVGATSGIGLDVARLFISRGWFVGVAGRNTQMLDALKQENPSQVYTAVIDITHSDAPERLSHLIEEMSGMDVYFHSSGIGYNNPQLDETKELDTLRTNGEGFTRMIGAAYRYFRLRKKGQIVAISSVAATRGMGSAPAYSATKRFQMHYLQSIRQLATTDSLHLTVTEIRPGFVDTPLLRDGKYPMLMESKIVAQAIVKAVIRRKRLLTFDWRYRLLVAFWRMIPVRIWEKTRV","1298272 1298994","TIGR ID: PG1221","probable oxidoreductase (short-chain dehydrogenase)","Cytoplasm, Inner membrane","Numerous significant and weak hits in gapped BLAST; e.g. residues 1-232 are 27% similar to pir||A41768 orf 5' to uraA of Myxococcus xanthus, residues 4-186 are 28% similar to gb|AAF84553.1|AE003997_9 oxidoreductase of Xylella fastidiosa, residues 30-232 are 28% similar to sp|P25970|YURA_MYXXA hypothetical oxidoreductase in uraA 5' region of Myxococcus xanthus.","
InterPro
IPR002198
Family
Short-chain dehydrogenase/reductase SDR
PTHR19410\"[1-215]TADH_short_C2
PF00106\"[4-165]Tadh_short
InterPro
IPR002347
Family
Glucose/ribitol dehydrogenase
PR00081\"[5-22]T\"[75-86]T\"[120-136]T\"[169-186]TGDHRDH
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.720\"[1-236]TG3DSA:3.40.50.720
PTHR19410:SF23\"[1-215]TPTHR19410:SF23
SSF51735\"[2-232]TSSF51735


","BeTs to 8 clades of COG1028COG name: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)Functional Class: RThe phylogenetic pattern of COG1028 is a--KYQVCEBRHUJ----inXNumber of proteins in this genome belonging to this COG is 3","***** IPB002198 (Short-chain dehydrogenase/reductase (SDR) superfamily) with a combined E-value of 4.6e-06. IPB002198 126-161","Residues 8-185 are 31% similar to a (PROTEIN OXIDOREDUCTASE DEHYDROGENASE REDUCTASE NAD NADP) protein domain (PD000038) which is seen in Q54220_STRGR.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon May 7 16:52:29 MDT 2001","Mon May 7 16:52:29 MDT 2001","Wed Feb 14 17:14:10 MST 2001","Thu Apr 5 15:58:57 MDT 2001","Wed Feb 14 17:14:10 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 7-183 are 25% similar to PG0608, a predicted short-chain dehydrogenase.","Wed Feb 14 17:14:10 MST 2001","Wed Feb 14 17:14:10 MST 2001","-48% similar to PDB:2JAH BIOCHEMICAL AND STRUCTURAL ANALYSIS OF THE CLAVULANIC ACID DEHYDEOGENASE (CAD) FROM STREPTOMYCES CLAVULIGERUS (E_value = 5.2E_13);-48% similar to PDB:2JAP CLAVULANIC ACID DEHYDROGENASE: STRUCTURAL AND BIOCHEMICAL ANALYSIS OF THE FINAL STEP IN THE BIOSYNTHESIS OF THE BETA-LACTAMASE INHIBITOR CLAVULANIC ACID (E_value = 5.2E_13);-49% similar to PDB:2NM0 Crystal Structure of SCO1815: a Beta-Ketoacyl-Acyl Carrier Protein Reductase from Streptomyces coelicolor A3(2) (E_value = 1.7E_11);-50% similar to PDB:2NTN Crystal structure of MabA-C60V/G139A/S144L (E_value = 6.4E_11);-49% similar to PDB:1UZM MABA FROM MYCOBACTERIUM TUBERCULOSIS (E_value = 8.3E_11);","","","Residues 6 to 231 (E-value = 2.7e-11) place PG1082 in the adh_short family which is described as short chain dehydrogenase (PF00106)","Thu Apr 5 15:58:57 MDT 2001","34540933","","","","","","1","","","PG1221" "PG1082.1","1299485","1299171","315","TTGTATATGGATCGTTATCATGTATTGCGATATTCGTATCCTGATCTGAAGAAGTTCGTTCTATCTTCTCTTTGGCAGCCAAAAACACTTGCGTTTGGGTGCTTATTTAGAATGATTCTAAACTCATCTTCGTTGTTGAAAACTTTTTTGGCGCATGTTTTTATACCAATGGATAGTACAAGCAGGGATGATTCGGTATTCGTGCCAGTAGAATTACAGATCCTTTCCATGCGATTCTTCATGCTTATTCGTATGCTGATCGGACACAAAGAAGATGAAGGGGGGCACTTAGAGGATAGAAGGGAGGGGATTTGT","","","12346","LYMDRYHVLRYSYPDLKKFVLSSLWQPKTLAFGCLFRMILNSSSLLKTFLAHVFIPMDSTSRDDSVFVPVELQILSMRFFMLIRMLIGHKEDEGGHLEDRREGIC","","TIGR ID: PG1222","hypothetical protein","Cytoplasm","No hit found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Thu Feb 15 08:51:13 MST 2001","","Thu Feb 15 08:51:13 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1-48 are 56% similar to PG1241.2, a hypothetical protein.","Mon Jun 4 11:39:43 MDT 2001","Mon Jun 4 11:39:43 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jun 4 11:39:43 MDT 2001","34540934","","","","","","1","","","PG1222" "PG1083","1300042","1301499","1458","ATGCCCATATCGAAAAAATCTTTTGGCAGATGGCTTTTATGTATGGTCGGTCTTGCCGCTTCCATCCTTGTAGGAGCCTTGTCTCAGAGTTGCCGAGGCTGTGTGTCCGAAGAGGGGAGAGCCGACAGCATCCCATGCGACTCCTCTGTCGTATCGGGGCTGCGCTCTGCGGACACGCTACGCGTGGCTACACTCTCATCATCGACCACCTACTTCGTGTACAAAGACGAAGAAATGGGCTATGAGTACGAGCTGGCCAAGCTGCTCGCCGACTCTCTGGGCTTGACTCTGGTCGTAGAAGTGGTGCCCAACGACGAGGCACTTTATGCTGCGGTCGATACCGGTCTGGTCGATATGGCAATTACACCTCAGGCCGCAACCTTCAAGGGTAAGCAGAAGTATCTCTTCGTTGGTCCCGAAGAAATATCGGGACAAGTATTGGTGCAACGCAGCGACGGCAATCCACGTATAACGAACGTAACAGATCTTATCGGCAAGCCCGTTACAGTCATGGCACATACTCGCTATGCCGATCGGCTCCGGCACCTGAACGAAGAAGTGGGGGGAGGTATCGATTCGCTGATCCTCAGCGGAGATACCCTCACGACCGAAGACCTGATCACGCAGGTAGCCAAAGGAGAAATAGACTACACCTTTGCCGATGAACAGTTGGCACGACTGGCACGAACCTACTACCGCAATATAGACATCAGTTTGAAAGTAGGCTTCGGACAAAGGCTGCAATGGATCGTCCGCAAGGACAATCATTGTCTGGCGCGGTGGGTGAACCGATGGGGGGAATCCATCCCCGACAAGGAATCGTACCGAGCCATACAGAAGCGATACTTCGAGATGAGCAAGAGCGACGATGAGGTCGAAGAGGAGCAGTCCGCTCCCCGACCTCGCATCAAGCTGAGGAAAGGGAGTATATCGCAGTACGATACCATTTTCAAGCACTATGCAGAGGAGTTTCGGCTCGGCTGGTCTTGGCATCTGCTCGCATCCATCGCCTACCACGAATCGCGCTTCAATGCCGGTATCGTAGGCTGGTCCGGTGCCAGAGGTTTGATGGGTATCATGCCGAGGACAGGCCGACGCTTCGGAGCCGACAAGCAGGAACTTCTGGATCCGGAAGTTTCGGTACGCGTCTCCATCCGATGCCTGTTGGCGTTCAAGAACGAATTTCCCGATGTAACGGATCCGGAAGAAAAGCTCAAGTTTACGCTCGCTGCCTACAATGCCGGCTCGGGTCACGTGGCGGACGCAAGGCGTTTGGCTGCGAAGTACGGGGGCAACCCCAACGTATGGGACAATAACGTGGAGGCATACATCCGCCTCAAGAAAGACCCTAACTACTATAACGATCCTGTCTGTCGCTCCGGCTATCTGCGAGGTGCGGAGACGATCAACTATGTACGCAGCGTAATGGCTCGTTATCAGGCATACAAACAGAAGGAT","7.40","1.40","54522","MPISKKSFGRWLLCMVGLAASILVGALSQSCRGCVSEEGRADSIPCDSSVVSGLRSADTLRVATLSSSTTYFVYKDEEMGYEYELAKLLADSLGLTLVVEVVPNDEALYAAVDTGLVDMAITPQAATFKGKQKYLFVGPEEISGQVLVQRSDGNPRITNVTDLIGKPVTVMAHTRYADRLRHLNEEVGGGIDSLILSGDTLTTEDLITQVAKGEIDYTFADEQLARLARTYYRNIDISLKVGFGQRLQWIVRKDNHCLARWVNRWGESIPDKESYRAIQKRYFEMSKSDDEVEEEQSAPRPRIKLRKGSISQYDTIFKHYAEEFRLGWSWHLLASIAYHESRFNAGIVGWSGARGLMGIMPRTGRRFGADKQELLDPEVSVRVSIRCLLAFKNEFPDVTDPEEKLKFTLAAYNAGSGHVADARRLAAKYGGNPNVWDNNVEAYIRLKKDPNYYNDPVCRSGYLRGAETINYVRSVMARYQAYKQKD","1299871 1301499","TIGR ID: PG1224","conserved hypothetical protein","Outer membrane, Periplasm, Cytoplasm","This sequence is similar to BT0183.Numerous significant hits in gapped BLAST; e.g. residues 111-536 are 29% similar to gb|AAG07151.1|AE004795_3 conserved hypothetical protein of Pseudomonas aeruginosa, residues 106-536 are 28% similar to gb|AAD24214.1| unknown of Pseudomonas putida GB-1, residues 78-538 are 26% similar to gb|AAF94028.1| transglycosylase, Slt family of Vibrio cholerae. ","
InterPro
IPR001638
Family
Bacterial extracellular solute-binding protein, family 3
SM00062\"[59-286]TPBPb
InterPro
IPR008258
Domain
Lytic transglycosylase, catalytic
PF01464\"[315-435]TSLT
noIPR
unintegrated
unintegrated
G3DSA:1.10.530.10\"[312-484]Tno description
G3DSA:3.40.190.10\"[57-192]Tno description
PS51257\"[1-31]TPROKAR_LIPOPROTEIN
signalp\"[1-28]?signal-peptide
tmhmm\"[10-30]?transmembrane_regions


","No hit to the COGs database.","***** IPB000189 (SLT domain) with a combined E-value of 3.7e-06. IPB000189A 340-364","Residues 313-417 are 35% similar to a (PROTEIN TRANSGLYCOSYLASE LYTIC MUREIN PRECURSOR) protein domain (PD003175) which is seen in Q51916_PROMI.","","Thu Jun 14 11:19:31 MDT 2001","","Thu Jun 14 11:19:31 MDT 2001","Thu Jun 14 11:19:31 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:19:31 MDT 2001","Thu Jun 14 11:19:31 MDT 2001","","","Thu Feb 15 09:01:16 MST 2001","Thu Nov 20 21:04:09 2003","Tue Feb 6 13:33:44 MST 2001","Thu Nov 20 21:04:09 2003","Thu Nov 20 21:04:09 2003","yes","Fri Feb 20 15:41:32 MST 1998","Residues 117-339 are 25% similar to PG0335, a conserved hypothetical protein.","Mon Jun 4 11:41:24 MDT 2001","Thu Feb 15 09:01:16 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 60 to 285 (E-value = 1.2e-07) place PG1083 in the SBP_bac_3 family which is described as Bacterial extracellular solute-binding proteins, family 3 (PF00497)Residues 315 to 435 (E-value = 6.3e-22) place PG1083 in the SLT family which is described as Transglycosylase SLT domain (PF01464)","Thu Nov 20 21:04:09 2003","","","","","","","1","","","PG1224" "PG1084","1301528","1303396","1869","ATGTTTCAGGCACAGCACTTGACCAAAAGTTTCGGCGATTTGGTTCTCTTCGAAGACCTCTCTTTCAGTATCGAACGGGGCGAAAAGGTTGGACTTATCGCACGCAACGGCAACGGGAAAACGACCCTGATGAATATCCTTACGGGAATCGACTCACCCGATTCCGGAGAAGTGATCTACCAAAACGGTATCCGCCGTGCATACCTGCCACAGCTTCCCCAAGTACTTCCGGGCAGTACCGTACTGGAGACCTGCTTCGGACACAACGATGAGATGACCTCCCTGATAGCGCAATGGGAGGAGGCTTCGGCTCGGGGCGACGGCAAACGCATGGAGGAGTTGCTCCCCGAAATGGATGCCCTTGGCGCGTGGGAGTACGAACAGCGCGCGCGGGAGATTCTCACCCGTCTGCATCTGGACGATCTGCACTGCACCACGGACAATCTCTCCGGTGGGGAGCTTAAGCGTATCGCTCTGGCAGGTACGCTCATCGGCAATCCGGAACTGCTGTTTCTGGACGAACCGACCAATCACCTCGATCTGGACGTGATCGAATGGCTGGAGGGCTACCTCTCGCATCAGCAGATCGGACTGCTTCTGGTCACCCACGACCGCTACTTTCTGGATCGCGTATGCAACCGCATACTGGAGCTGGACAACAAACAGCTGTATGCCTACAAAGGCAACTACGAATACTACCTGAACAAACGGGAAGAGCGGCTGGAAGCCACCGAACGCGAAACAAGCCGCGCAGCCAACCTCCTGCGCCGCGAAGCGGAATGGATGCATCGCAGACCGCAGGCACGCGGCACGAAAGCGAAGAGCCGCATTGATGCCTTCTACGAACTCAAGGAAAAAGCCCAACCTCGCCACCGGGACGAAACGCTCCACCTCTCGGAACAGGGCAGATACATAGGCAATAAGATATTCGAAGCTCACAAAGTCTGTAAAGCTTTCGGCGATCGCACTATCCTGAGCGACTTCGACTACATTTTCAGCCGGTACGACAAGGTAGGTATCGTAGGGCCCAACGGCGTGGGCAAGACCACTTTCCTCCGGCTGCTGCTCGGCGAAGAAAAGCCGGACTCGGGGTATTTCGATGTAGGGGAGACGGTTCGCTTCGGCTATTACAGTCAGAAGGGCATGCAGTTTGACGAAAACAAACGCGTCATCGAAGCCGTGCAGGACATCGCCGAGGTGATTCGGAATGAAAAGGATGGTACCACCCTCTCGGCATCGGCCTTGCTGACGCAGTTCCTTTTCCCGCCCGAGAAGCAATATACGCCGATCCACAAGTTGAGCGGTGGCGAACAGCGCAGGCTCTACCTCTGCACCGTGCTGATGAAGAACCCCAATTTCCTGATTCTCGACGAGCCCACCAACGACCTCGATATCCTCACGCTGAACGTGCTGGAGAACTACCTGAGCGAATTCAAAGGATGCGTACTCGTCGTCTCGCACGACCGCTTCTTCATGGACAAGGTAGTGAACCATCTCTTCACGTTCGAGGGGAACGGCATCGTGAAGGATTTCCCCGGCAACTACACCCAGTACCGCGAATACAAACAGCAGGAAGAGGCCGAAAGGCAGACCGTCGAATCTTCCCCCTCGACACGTAAGGCAGAAAGCGAAAAGCCCCGAACCGACGCTGCCGAGCGTCCGCGAAAGCTGACCTTCAAGGAGAAGCAGGAGCTGGAACGGCTCGAAGCCGAACTACCAAAATTAGAAAAGGAGAAAGCCGAACTGGAATCCCGAATGAGCAGCGGCACGATGGCCACGGACGAACTACTCACCGCCGGCGACCGGATCGCCGCCCTGATCGAAGAGATCGACAGCAAGGGGATGCGCTGGCTGGAGCTAAGCGACATC","5.10","-19.81","71533","MFQAQHLTKSFGDLVLFEDLSFSIERGEKVGLIARNGNGKTTLMNILTGIDSPDSGEVIYQNGIRRAYLPQLPQVLPGSTVLETCFGHNDEMTSLIAQWEEASARGDGKRMEELLPEMDALGAWEYEQRAREILTRLHLDDLHCTTDNLSGGELKRIALAGTLIGNPELLFLDEPTNHLDLDVIEWLEGYLSHQQIGLLLVTHDRYFLDRVCNRILELDNKQLYAYKGNYEYYLNKREERLEATERETSRAANLLRREAEWMHRRPQARGTKAKSRIDAFYELKEKAQPRHRDETLHLSEQGRYIGNKIFEAHKVCKAFGDRTILSDFDYIFSRYDKVGIVGPNGVGKTTFLRLLLGEEKPDSGYFDVGETVRFGYYSQKGMQFDENKRVIEAVQDIAEVIRNEKDGTTLSASALLTQFLFPPEKQYTPIHKLSGGEQRRLYLCTVLMKNPNFLILDEPTNDLDILTLNVLENYLSEFKGCVLVVSHDRFFMDKVVNHLFTFEGNGIVKDFPGNYTQYREYKQQEEAERQTVESSPSTRKAESEKPRTDAAERPRKLTFKEKQELERLEAELPKLEKEKAELESRMSSGTMATDELLTAGDRIAALIEEIDSKGMRWLELSDI","1301528 1303396","The function of this ABC element may be related to multidrug resistance.See ABC Transporters Analysis.TIGR ID: PG1225","ABC transporter ATP-binding protein","Cytoplasm, Inner membrane","Numerous significant hits to ABC transporter protein in gapped BLAST; e.g. residues 1-622 are 41% similar to dbjBAA18411.1 ABC transporter of Synechocystis sp., residues 1-520 are 42% similar to embCAB12566.1 similar to ABC transporter (ATP-binding protein) of Bacillus subtilis, residues 1-563 are 35% similar to embCAB84504.1 putative ABC transporter ATP-binding protein of Neisseria meningitidis Z2491.","
InterPro
IPR003439
Domain
ABC transporter related
PD000006\"[148-187]T\"[433-475]TABC_transporter
PF00005\"[27-221]T\"[337-505]TABC_tran
PS00211\"[149-163]TABC_TRANSPORTER_1
PS50893\"[2-245]T\"[310-529]TABC_TRANSPORTER_2
InterPro
IPR003593
Domain
AAA+ ATPase, core
SM00382\"[26-221]T\"[334-512]TAAA
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[1-268]T\"[272-553]TG3DSA:3.40.50.300
PTHR19211\"[121-597]TPTHR19211
PTHR19211:SF7\"[121-597]TPTHR19211:SF7
SSF52540\"[1-277]T\"[312-517]TSSF52540


","BeTs to 10 clades of COG0488COG name: ATPase components of ABC transporters with duplicated ATPase domainsFunctional Class: RThe phylogenetic pattern of COG0488 is ----Y--CEBRHuj--olinxNumber of proteins in this genome belonging to this COG is 3","***** IPB001617 (ABC transporters family) with a combined E-value of 9.6e-08. IPB001617A 340-355 IPB001617B 434-445","Residues 477-526 are 74% similar to a (PROTEIN ATP-BINDING TRANSPORTER ABC TRANSPORT REPEAT) protein domain (PD000796) which is seen in P74317_SYNY3.Residues 68-180 are 34% similar to a (A201A-RESISTANCE ATP-BINDING PROTEIN ARD1) protein domain (PD064762) which is seen in Q53912_STRCP.Residues 399-522 are 45% similar to a (ATP-BINDING PROTEIN NUCLEOTIDE BINDING) protein domain (PD068705) which is seen in EXPZ_BACSU.Residues 18-58 are 48% similar to a (ATP-BINDING TRANSPORT PROTEIN TRANSPORTER ABC) protein domain (PD000005) which is seen in CTRD_NEIME.Residues 432-475 are 67% similar to a (ATP-BINDING TRANSPORT PROTEIN TRANSPORTER ABC) protein domain (PD000006) which is seen in O06476_BACSU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Wed Jun 16 11:44:27 2004","Fri Feb 23 10:29:51 MST 2001","Wed Jun 16 11:44:27 2004","Thu Feb 15 09:46:39 MST 2001","Fri Feb 23 10:29:51 MST 2001","Thu Feb 15 09:46:39 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1-622 are 31% similar to PG1923, a predicted ABC transporter (ATP-binding protein). Similarities are also seen to PG1929, PG1533, PG1477, PG0844, PG0618, PG0921, PG0566, all predicted ABC transporter proteins.","Thu Feb 15 09:46:39 MST 2001","Wed Jun 16 11:44:27 2004","-43% similar to PDB:1YQT RNase-L Inhibitor (E_value = 1.4E_25);-45% similar to PDB:2IW3 ELONGATION FACTOR 3 IN COMPLEX WITH ADP (E_value = 5.0E_20);-45% similar to PDB:2IWH STRUCTURE OF YEAST ELONGATION FACTOR 3 IN COMPLEX WITH ADPNP (E_value = 5.0E_20);-45% similar to PDB:2IX3 STRUCTURE OF YEAST ELONGATION FACTOR 3 (E_value = 5.0E_20);-49% similar to PDB:1Z47 Structure of the ATPase subunit CysA of the putative sulfate ATP-binding cassette (ABC) transporter from Alicyclobacillus acidocaldarius (E_value = 5.4E_14);","","","Residues 27 to 221 (E-value = 3.2e-40) place PG1084 in the ABC_tran family which is described as ABC transporter (PF00005)Residues 337 to 505 (E-value = 6e-29) place PG1084 in the ABC_tran family which is described as ABC transporter (PF00005)","Wed Jun 16 11:44:27 2004","34540936","","","","","","1","","","PG1225" "PG1085","1303407","1304108","702","GTGAGACGGCACACAGTAATAAACATCAACGATAATGATATGAAACGAACCTTATTTATCCTACTTGTACTCGTAGCCTGCTGTGCGGCTGCGGCACAAACCGGCGAAGCACGCCGTCGCGTCCTGATCGAAACATCGCGGGGCAAAATGACGGTAGAGCTTTTCAACGAGACGCCGATCCATCGCGACAACTTCATCTCCCTCGTCCGCAGCGGAGCTTACCGCGGTGTGCTCTTCCACCGCGTCATCAACCAGTTCATGGTACAGTCGGGCAACCTCCTGAGCAAAAACGCCAAGCCGCTCGAAGACCTCGGCAACGACACCACCACGCGTACCCTGCCGGCGGAGATCGATCCGTCCAAACACTTCCACCGACGGGGTGCACTCTGCGCGGCGCGACAAGGCGACGACGTGAATCCCGAAAAACGCTCATCGGCCACCCAATTCTACATCGTCACGGGACGATTCTTCACCGACTTCGACCTCGAACGCATGGCGGAGGAGAAGAAATGCACCTTTTCGGAAGAGCAGAAGAAAGCCTATATGCTCCAAGGTGGCGCACCCCACCTCGATGGCGACTACACCGTCTTCGGCCAACTGATCGAAGGCGAAAAGACCCTCTCCAAAATCGAACGCCAGCATACGGACGAGCGCAATCGTCCCCTGAAAGATATCGTAATCCTTAATATGACACTGCTGAAC","8.90","5.50","26610","VRRHTVININDNDMKRTLFILLVLVACCAAAAQTGEARRRVLIETSRGKMTVELFNETPIHRDNFISLVRSGAYRGVLFHRVINQFMVQSGNLLSKNAKPLEDLGNDTTTRTLPAEIDPSKHFHRRGALCAARQGDDVNPEKRSSATQFYIVTGRFFTDFDLERMAEEKKCTFSEEQKKAYMLQGGAPHLDGDYTVFGQLIEGEKTLSKIERQHTDERNRPLKDIVILNMTLLN","1303407 1304108","TIGR ID: PG1226","probable peptidyl-prolyl cis-trans isomerase","Cytoplasm, Outer membrane, Periplasm, Inner membrane","Numerous hits in gapped BLAST. Residues 42-233 are 33% similar to gb|AAK04991.1|AE006323_6 peptidyl-prolyl cis-trans isomerase of Lactococcus lactis subsp. lactis. Numerous weaker hits to cyclophilin and peptidylprolyl proteins; e.g. residues 41-229 are 28% similar to gb|AAC38986.1| cyclophilin Dicyp-3 of Dirofilaria immitis, residues 42-212 are 28% similar to gb|AAF12082.1|AE002083_6 peptidyl-prolyl cis-trans isomerase, cyclophilin-type of Deinococcus radiodurans.","
InterPro
IPR002130
Domain
Peptidyl-prolyl cis-trans isomerase, cyclophilin-type
G3DSA:2.40.100.10\"[35-234]Tno description
PF00160\"[40-233]TPro_isomerase
PS50072\"[48-232]TCSA_PPIASE_2
noIPR
unintegrated
unintegrated
PTHR11071\"[43-156]T\"[188-233]TCYCLOPHILIN
PTHR11071:SF32\"[43-156]T\"[188-233]TPEPTIDYL-PROLYL CIS-TRANS ISOMERASE (CYCLOPHILIN)
signalp\"[1-31]?signal-peptide
tmhmm\"[15-35]?transmembrane_regions


","BeTs to 8 clades of COG0652COG name: Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin familyFunctional Class: OThe phylogenetic pattern of COG0652 is --t-Y--CEbRhuj---l---Number of proteins in this genome belonging to this COG is 1","***** IPB002130 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase) with a combined E-value of 2.7e-08. IPB002130A 47-73 IPB002130B 74-113 IPB002130C 163-207","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Fri Feb 23 10:34:45 MST 2001","Thu Feb 15 10:26:10 MST 2001","Thu Feb 15 10:26:10 MST 2001","Fri Feb 23 10:34:45 MST 2001","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 15 10:26:10 MST 2001","-44% similar to PDB:1XYH Crystal Structure of Recombinant Human Cyclophilin J (E_value = 2.9E_13);-45% similar to PDB:1CYN CYCLOPHILIN B COMPLEXED WITH [D-(CHOLINYLESTER)SER8]-CYCLOSPORIN (E_value = 6.1E_11);-43% similar to PDB:1A33 PEPTIDYLPROLYL ISOMERASE, CYCLOPHILIN-LIKE DOMAIN FROM BRUGIA MALAYI (E_value = 1.8E_10);-43% similar to PDB:1A58 CYCLOPHILIN FROM BRUGIA MALAYI (E_value = 1.8E_10);-43% similar to PDB:1C5F CRYSTAL STRUCTURE OF THE CYCLOPHILIN-LIKE DOMAIN FROM BRUGIA MALAYI COMPLEXED WITH CYCLOSPORIN A (E_value = 1.8E_10);","","","Residues 40 to 233 (E-value = 6.2e-12) place PG1085 in the Pro_isomerase family which is described as Cyclophilin type peptidyl-prolyl cis-trans isomerase (PF00160)","Fri May 4 14:11:11 MDT 2001","34540937","","","","","","1","","","PG1226" "PG1086","1304277","1304092","186","TTGGAACGGTCGGAAAGGTTAGCAACCGGCCTTTCTCCCGTTTTTTTCCTCCCGATGGCATGGCTGTTCTCCCGATTGATACGTGTGAAAAACGTAGAGGTAAAAGAAGGGGGAGCCGGCACGTGGTCGGCTCCCCCTCTTCGTATGTGTGTGTTCGGCAGTGGTCTTAGTTCAGCAGTGTCATAT","10.50","2.93","6757","LERSERLATGLSPVFFLPMAWLFSRLIRVKNVEVKEGGAGTWSAPPLRMCVFGSGLSSAVSY","1304442 1304092","TIGR ID: PG1227","hypothetical protein","Periplasm, Cytoplasm","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-26]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 11:19:49 MDT 2001","","Thu Jun 14 11:19:49 MDT 2001","Thu Jun 14 11:19:49 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:19:49 MDT 2001","Thu Jun 14 11:19:49 MDT 2001","","","Thu Feb 15 11:20:27 MST 2001","","Thu Feb 15 10:41:03 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","PG1086 is 59% similar to PG0169.1, a hypothetical protein (ISPg1-related). Residues 1-49 are 85% similar to PG0838, a calcium ion-transporting ATPase. Similarites are also seen to PG0169.1, PG1100, PG0885, PG1895.1, and PG0685. The similarities tend to correspond to residues 1-60.","Mon Jun 4 11:59:17 MDT 2001","Thu Feb 15 10:41:03 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jun 4 11:45:22 MDT 2001","","","","","","","1","","","PG1227" "PG1086.1","1304156","1304401","246","GTGCCGGCTCCCCCTTCTTTTACCTCTACGTTTTTCACACGTATCAATCGGGAGAACAGCCATGCCATCGGGAGGAAAAAAACGGGAGAAAGGCCGGTTGCTAACCTTTCCGACCGTTCCAAGAGCCACGCGACAGATCTTTTTGGTCGGGAAAATACCATTGTGAGACCTTTGCAAAATAAGGAGGTGGAGGGAAGAGGAGTTCTTGGCAAAAAAGGAGCGAGTGAAAGGGGTGGCAGTAAGGAG","","","8945","VPAPPSFTSTFFTRINRENSHAIGRKKTGERPVANLSDRSKSHATDLFGRENTIVRPLQNKEVEGRGVLGKKGASERGGSKE","","NO TIGR ID corresponds to this gene.","hypothetical protein","Periplasm, Extracellular","No hit found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Thu Feb 15 11:26:13 MST 2001","","Thu Feb 15 11:16:43 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 53-82 are 86% similar to residues 88-117 of PG0837, a hypothetical protein. Similarities are also seen to PG1663, an ISPg3 (IS195) transposase, and PG1061.2, a hypothetical protein.","Mon Jun 4 12:02:59 MDT 2001","Mon Jun 4 12:02:59 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jun 4 12:02:59 MDT 2001","","","","","","","1","","","" "PG1087","1305246","1304470","777","ATGGAAGAGGTATCTCCCGACCACAGCACCATCAGTCGATTTCGTTCGGCACTGACAGAGTTGGGGCTCATGGACAAACTATTGGCGCAGTTTAACAAACAACTTTCCCGCCATCACATTTCGGTCAGGGAAGGGGTGCTTGTCGATGCAAGCCTTGTGGAGACGCCGCATAAACCCAACGGAAGCATTACGATTGAAGTCGCAGACGACAGAGAAGACAATCGGAGCGAGGAGGAAAAAGAGGCAGAGGAGGATTATCAAAAACAGGTTGTCCGTCAGCGTAAAGGGACGGATGAAGAAGCCCGTTGGGTTTACAAACAAAAGCGTTATCACTACGGATACAAAAAGCATTGTCTGACCAATGTTCAAGGCATTGTTCAAAAGGTGATAACGACTGCAGCGAACCGCAGTGACACGAAGGAGTTTATTGCGCTATTGCAGGGTGCAAACATACCTCAAGGCTCAGCCGTCTTGGCGGACAAAGGATATGCTTGCGGGGAAAATCGTTCCTACCTGCAAACCCATCACCTTCAAGACGGCATCATGCACAAGGCACAACGCAACAGGGCATTGACCGAGGAAGAGAAGCAACGAAACAAAGCAATCAGTCGGATACGGAGCACCATCGAACGCACCTTTGGCAGTATTCGCCGGTGGTTTCATGGCGGACGATGTCGATACCGGGGACTTGCCAAGACCCATACTCAAAACATTCTTGAAAGCATCGCCTTTAATTTATACAGAACCCCGGGGATAATTATGTCCTCATTTGTAGGA","10.10","10.52","29697","MEEVSPDHSTISRFRSALTELGLMDKLLAQFNKQLSRHHISVREGVLVDASLVETPHKPNGSITIEVADDREDNRSEEEKEAEEDYQKQVVRQRKGTDEEARWVYKQKRYHYGYKKHCLTNVQGIVQKVITTAANRSDTKEFIALLQGANIPQGSAVLADKGYACGENRSYLQTHHLQDGIMHKAQRNRALTEEEKQRNKAISRIRSTIERTFGSIRRWFHGGRCRYRGLAKTHTQNILESIAFNLYRTPGIIMSSFVG","1305246 1304470","Member of the IS5 family of elements. Reproduces the middle and C-terminal domains of full-length ISPg1 elements (e.g. PG1662).TIGR ID: PG1228","ISPg1 transposase fragment (IS1106-related transposase)","Cytoplasm","PG1087 is approximately equivalent to the previously sequenced AJ130872 in GenBANK. See also AB015879. Residues 6-248 are 34% similar to the IS1106 transposase from N.meningitidis (AE002488).","
InterPro
IPR002559
Domain
Transposase, IS4-like
PF01609\"[45-246]TTransposase_11


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 201-259 are identical to a (TRANSPOSASE ORF7 INSERTION SEQUENCE IS1126-LIKE GENE) protein domain (PD187845) which is seen in Q9ZA61_PORGI.Residues 55-200 are 87% similar to a (TRANSPOSASE PLASMID PROTEIN ELEMENT) protein domain (PD004652) which is seen in Q9ZA61_PORGI.Residues 8-54 are identical to a (TRANSPOSASE ORF7 INSERTION SEQUENCE) protein domain (PD187846) which is seen in Q9ZA61_PORGI.","","","","","","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","","","","Fri Feb 16 11:40:24 MST 2001","Fri Feb 16 11:40:24 MST 2001","Wed Jan 3 13:15:56 MST 2001","Wed Jan 3 12:00:08 2001","","Wed Feb 14 11:09:33 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1087 is virtually identical to PG1184, PG0763, PG1755, PG0686, PG0756, PG1798, PG1230, PG1919, PG0044, PG0689, PG1215, PG1665, PG0839, PG1895, all ISPg1 fragments that reproduce the middle and C-terminal residues of PG1267, PG0169, PG1050, PG1062, PG0740, PG0918, PG1662, PG1422, PG0420, PG0499, PG1099.Also, partial similarities to PG0732, PG0842, PG0883, PG1231, PG0730, PG1159, PG1608.","Fri Feb 16 11:40:24 MST 2001","Wed Feb 14 11:09:33 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 45 to 246 (E-value = 2.2e-40) place PG1087 in the Transposase_11 family which is described as Transposase DDE domain (PF01609)","Thu Jun 14 11:20:25 MDT 2001","","","Hanley,S.A., Aduse-Opoku,J. and Curtis,M.A.A 55-kilodalton immunodominant antigen of Porphyromonas gingivalisW50 has arisen via horizontal gene transferInfect. Immun. 67 (3), 1157-1171 (1999)Maley,J. and Roberts,I.S.Characterisation of IS1126 from Porphyromonas gingivalis W83: a new member of the IS4 family of insertion sequence elementsMicrobiol. Lett. 123 (1-2), 219-224 (1994)Shibata,Y., Hayakawa,M., Takiguchi,H., Shiroza,T. and Abiko,Y.Determination and characterization of the hemagglutinin-associatedshort motifs found in Porphyromonas gingivalis multiple geneproducts. J. Biol. Chem. 274 (8), 5012-5020 (1999)","Knight,A.I., Ni,H., Cartwright,K.A. and McFadden,J.J.Identification and characterization of a novel insertion sequence, IS1106, downstream of the porA gene in B15 Neisseria meningitidis.Mol. Microbiol. 6 (11), 1565-1573 (1992)","Wed Feb 14 11:09:33 MST 2001","Wed Feb 14 11:09:33 MST 2001","1","","","PG1228" "PG1088","1305945","1305655","291","ATGCGATCTCTTTTTCTATTTTTTTCGATACTTTCAGAAAAATCGGTTCTATCACTCTATAAAGTTGGGACCTACCTCAATCAGCATCATAAAGTATCTGTAGATTTCAAAACCCAGCAGAAAAAAGaTCCCCGAAACACTTATAAAACTCAGAGGAATTGTTTGCCGTTGCATCGAAGCCGTTTGGAGGATTCCTCTCTGTATAGGATTATGATCGTTTTCGGCGAAGGGGGAGCTGTCCGCCGGACAATCTGCATTGCAGAGCCGAAATGCAGATTTCTCGGCGAACAA","10.70","9.56","11338","MRSLFLFFSILSEKSVLSLYKVGTYLNQHHKVSVDFKTQQKKDPRNTYKTQRNCLPLHRSRLEDSSLYRIMIVFGEGGAVRRTICIAEPKCRFLGEQ","1305945 1305655","TIGR ID: PG1229","hypothetical protein","Periplasm, Cytoplasm","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-18]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Feb 15 11:28:53 MST 2001","","Thu Feb 15 11:28:53 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 15 11:28:53 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540938","","","","","","1","","","PG1229" "PG1089","1308161","1306056","2106","ATGAAGAAGAGAAAACAGCTATCGCTGGCGTTGGCATGGTCGCTTGCTTTGCTTCCGGTGGGAGGATACACGGCATTTGCCCAAGTAAACACGACAGCTCAAACGGTGAAACCTCAAAATATAAACCCGATGCAAAAACGTATGTCCTCCTTTCGGCAGGAAATGCTCAGTGAACTGACAGATCTATTGGTGCAACGCTATGGCAAGGAGGTTCATTTCCGAGCCGACCGTGGCACTTCACAAGCAGCGGCTTTATGGCGTGCAGAGGATGGTGACGTGGAGGCTTTTCGCACATTCGTCCTCGAAAATTTCGAGCCTACGATCGATGGTCAGCGCCGTATGTATCGTACACTGGAGCGGAATTTGGAAATCCTCAACGGCTACTTCAACAAGATCGATCTGGCCCTGAAAGAACCCCTCCACCTCAAAGGGCCGGAGATCAGTTCTCTGGATATGATCTTCGGTGGATACAGCGCGTCGGCACACCTGAGCGATGATCTCTATGCCAATAAGGCCGGACTGATAGCTGCACTGAACTTCCCCTACTACTCTCTCGCGGAGAAGATGGAGCTGGGGGCGAAGTGGAGCAGAGAAGAGTGGGCTTTTGCCCGAATGGGCGATCGTTTCGCTTCGCGGATACCGGCTGAAGTGCAGCAATCCGTATCGGAGACCTTGACACGTGGGGATGCCTACATATCCGAATACAATATCTGTATGGGCTACCTACAGCGTCCGGACGGCTCCACACTCTTTCCCCGCAATATGAAACTGATCACGCACTGGGGGCTGCGAGATGAGATCAAAAGCAACTATGCGGACACGAAAGGCGGATTGGAAAAGCAGCGAATGATATACGCGATCATCAAGAGGATCATCGACCAAAGTATCCCACGCGAAGTAATCGACAAGACGGACTTTCAATGGGATCCCCTGAGCAATATGCTCTACGACCCGGCCGGCACTGCTATCCGAGGTCATGCCGAACCCGATACGCGATATGAATATTTCCTGGCCAATTTCCGTGCGATGCAAGCACAGGATGCATACATGCCGCATCAGCCGAACCAGATCCTGCGTGCATTCGAGGGAGAGATGGAGATTCCGCAAGAAGACGTCAAACAGCTATTCGAAACACTGCTCTCCTCTCCACAGGTAAAGAAGGTGGCTCAACTGATCAGCAAACGATTGGGACGCCCGTTGGAGCCGTTCGACATCTGGTACAACGGCTTTCGCTCGCAGTCGGGTATGCCAGAGAGCGAATTGGACAAAATCACCGCAGCTAAATATCCTACACCCGAAGCACTCAAAGCCGATCTGCCGAACATCCTGCGCAAGCTGGGATTCGAAAGCAAAGATGCCGAGCGGATAGCTTCTTTGGTGATGGTGGATCCTTCGCGAGGTGCCGGCCATGCTGCAGGCTCGATGATGCGCAATGACTTTGCTCGCCTGCGCACACGTATCGCCGATACGGGGATGGACTACAAAGGATACAATATAGCCGTACACGAATTCGGACACAATACGGAGCAAACCATCACGATGAACGATGTGGACTACTACATGCTCAACGGTGTGCCGAACACATCCTTCACCGAAGCCGTCGCTTTCCTCTTCCAGAAGCGGGATCTCGAACTCCTCGGTGTCAGCAAGCCCGATGCACAGAAGGAGTACAACGAGGCTCTGACCAACTTTTGGAATTGCTACGAGATCATGGGCGTATCCCTCGTAGACATGGCCGTTTGGGAATGGATGTACACGCATCCTGAAGCCGATGCACACGAGCTGAAACTCGCGGTCATGGACGCGGCCAAAACCGTTTGGAACAAGTACTACGCCGGCATTCTCGGAGAAAAGGACGAGACCATTCTGGGCATCTATTCGCATATGATCAATTATCCGCTCTACCTGCCCAATTATCCGATGGGGCATATCATCGACTTTCAGATCGAACAGTACATCAAGGGCAAATCCTTGGCCGTGGAGCTGAAGCGCATGCTCGTACAGGGACGACTGGTGCCGCAGTACTGGATGAAACAAGCCGTGGGTTCTCCCATATCGGTATTGCCTATACTCGAAGCCGTGGACGAAGCCCTTACGAAAGTGAAA","6.20","-5.89","80076","MKKRKQLSLALAWSLALLPVGGYTAFAQVNTTAQTVKPQNINPMQKRMSSFRQEMLSELTDLLVQRYGKEVHFRADRGTSQAAALWRAEDGDVEAFRTFVLENFEPTIDGQRRMYRTLERNLEILNGYFNKIDLALKEPLHLKGPEISSLDMIFGGYSASAHLSDDLYANKAGLIAALNFPYYSLAEKMELGAKWSREEWAFARMGDRFASRIPAEVQQSVSETLTRGDAYISEYNICMGYLQRPDGSTLFPRNMKLITHWGLRDEIKSNYADTKGGLEKQRMIYAIIKRIIDQSIPREVIDKTDFQWDPLSNMLYDPAGTAIRGHAEPDTRYEYFLANFRAMQAQDAYMPHQPNQILRAFEGEMEIPQEDVKQLFETLLSSPQVKKVAQLISKRLGRPLEPFDIWYNGFRSQSGMPESELDKITAAKYPTPEALKADLPNILRKLGFESKDAERIASLVMVDPSRGAGHAAGSMMRNDFARLRTRIADTGMDYKGYNIAVHEFGHNTEQTITMNDVDYYMLNGVPNTSFTEAVAFLFQKRDLELLGVSKPDAQKEYNEALTNFWNCYEIMGVSLVDMAVWEWMYTHPEADAHELKLAVMDAAKTVWNKYYAGILGEKDETILGIYSHMINYPLYLPNYPMGHIIDFQIEQYIKGKSLAVELKRMLVQGRLVPQYWMKQAVGSPISVLPILEAVDEALTKVK","1308161 1306056","TIGR ID: PG1230","hypothetical protein","Cytoplasm, Periplasm","No hits found in gapped BLAST.","
noIPR
unintegrated
unintegrated
SSF55486\"[501-698]TSSF55486


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Feb 15 11:32:26 MST 2001","Thu Feb 15 11:32:26 MST 2001","Thu Feb 15 11:32:26 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 15 11:32:26 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540939","","","","","","1","","","PG1230" "PG1090","1309704","1308370","1335","ATGAAGACCCAAGAAATTATGACAATGCTGGAGGCTAAGCACCCCGGCGAAAGCGAATTCCTCCAAGCAGTGAAGGAAGTTCTTCTCTCTGTAGAAGAAGTGTACAACCAACATCCCGAGTTCGAAAAGAACGGTATCATCGAGCGTATCGTAGAGCCGGATCGTGTATTCACATTCCGTGTACCCTGGGTAGATGACCAAGGTAAGGTACAGGTAAACATCGGCTACCGCGTTCAGTTCAACAATGCCATCGGTCCGTACAAGGGCGGTATCCGTTTCCATCCTTCAGTGAACCTCTCTATCCTGAAGTTCCTCGGTTTCGAACAGATGTTCAAGAATGCACTCACTACTCTCCCCATGGGTGGTGGTAAAGGTGGTGCCGACTTCTCTCCCAAGGGTAAGAGCGAAGCCGAAATCATGCGTTTCTGCCAGAGCTTCATGACCGAATTGTGGCGCAACATCGGCCCTGACACCGACATTCCTGCCGGTGACATCGGCGTAGGCGGTCGCGAAGTAGGTTATATGTTCGGTATGTACAAGAAGCTCGCTCGCGAGCACACAGGTACGCTTACCGGCAAGGGATTCGAGTTCGGCGGTTCTCGTCTGCGTCCCGAATCTACCGGTTTCGGTGCTGTTTACTTCGTACAGAACATGTGTAAGCAAAACGGTGTAGACTACAAGGGCAAAACTCTTGCTATCTCCGGATTCGGTAACGTTGCTTGGGGTGTGGCTCAGAAAGCTACCGAGTTGGGCATTAAGGTTGTTACGATCTCCGGTCCTGACGGCTATGTTTACGACCCCGACGGTATCAACACACCGGAGAAATTCCGATGCATGCTTGACCTCCGTGACAGCGGTAACGACGTAGTATCAGACTATGTGAAGAGATTCCCCAATGCTCAGTTCTTCCCCGGCAAGAAGCCTTGGGAGCAAAAGGTAGACTTCGCTATGCCTTGCGCTACGCAGAACGAGATGAACCTCGAAGATGCCAAGACGTTGCACAAGAATGGTGTTACTCTTGTAGCTGAAACTTCTAACATGGGTTGTACGGCCGAAGCCAGCGAATACTATGTAGCAAACAAGATGCTCTTCGCTCCGGGTAAGGCTGTTAATGCAGGTGGTGTTTCTTGCTCAGGTCTCGAAATGACGCAGAACGCTATGCACCTCGTTTGGACGAATGAAGAAGTGGACAAGTGGCTGCACCAGATCATGCAAGACATCCACGAGCAGTGCGTTACATACGGTAAAGACGGCAACTACATCGACTATGTGAAGGGTGCCAATATCGCCGGCTTCATGAAGGTTGCCAAGGCTATGGTAGCTCAGGGCGTTTGC","6.30","-3.42","49189","MKTQEIMTMLEAKHPGESEFLQAVKEVLLSVEEVYNQHPEFEKNGIIERIVEPDRVFTFRVPWVDDQGKVQVNIGYRVQFNNAIGPYKGGIRFHPSVNLSILKFLGFEQMFKNALTTLPMGGGKGGADFSPKGKSEAEIMRFCQSFMTELWRNIGPDTDIPAGDIGVGGREVGYMFGMYKKLAREHTGTLTGKGFEFGGSRLRPESTGFGAVYFVQNMCKQNGVDYKGKTLAISGFGNVAWGVAQKATELGIKVVTISGPDGYVYDPDGINTPEKFRCMLDLRDSGNDVVSDYVKRFPNAQFFPGKKPWEQKVDFAMPCATQNEMNLEDAKTLHKNGVTLVAETSNMGCTAEASEYYVANKMLFAPGKAVNAGGVSCSGLEMTQNAMHLVWTNEEVDKWLHQIMQDIHEQCVTYGKDGNYIDYVKGANIAGFMKVAKAMVAQGVC","1309782 1308370","TIGR ID: PG1232","NAD-specific glutamate dehydrogenase","Cytoplasm, Periplasm","PG1090 is essentially identical to a previously sequenced P.gingivalis protein in GenBank, AAA50985 and Q03578.Numerous significant hits to glutamate dehydrogenase proteins in gapped BLAST; e.g. residues 27-470 are 72% similar to gb|AAC26399.1| NAD(H) glutamate dehydrogenase of Bacteroides fragilis, residues 33-469 are 62% similar to gb|AAF15394.1|AF109177_1 NAD dependent glutamate dehydrogenase 2 of Entodinium caudatum, residues 27-470 are 58% similar to gb|AAB40142.1| NAD(P)H-dependent glutamate dehydrogenase of Prevotella bryantii.This sequence is similar to BT1973.","
InterPro
IPR006095
Family
Glu/Leu/Phe/Val dehydrogenase
PR00082\"[110-124]T\"[189-211]T\"[231-251]T\"[370-381]TGLFDHDRGNASE
PTHR11606:SF2\"[16-445]TGLFV_DH
PS00074\"[118-131]TGLFV_DEHYDROGENASE
InterPro
IPR006096
Domain
Glu/Leu/Phe/Val dehydrogenase, C-terminal
PF00208\"[198-443]TELFV_dehydrog
InterPro
IPR006097
Domain
Glu/Leu/Phe/Val dehydrogenase, dimerisation region
PF02812\"[53-183]TELFV_dehydrog_N
InterPro
IPR014362
Family
Glutamate dehydrogenase
PIRSF000185\"[15-444]TGlu_DH
noIPR
unintegrated
unintegrated
G3DSA:1.10.285.10\"[2-50]TG3DSA:1.10.285.10
G3DSA:3.40.192.10\"[55-197]TG3DSA:3.40.192.10
G3DSA:3.40.50.720\"[198-443]TG3DSA:3.40.50.720
PTHR11606\"[16-445]TPTHR11606
SSF51735\"[197-444]TSSF51735
SSF53223\"[3-192]TSSF53223


","BeTs to 7 clades of COG0334COG name: Glutamate dehydrogenase/leucine dehydrogenaseFunctional Class: EThe phylogenetic pattern of COG0334 is a--kY-vceBrhuj----inxNumber of proteins in this genome belonging to this COG is 1","***** IPB001625 (Glutamate/leucine/phenylalanine/valine dehydrogenase) with a combined E-value of 1.9e-72. IPB001625A 75-95 IPB001625B 102-150 IPB001625C 228-240 IPB001625D 341-353 IPB001625E 366-385 IPB001625D 266-278","Residues 9-186 are identical to a (DEHYDROGENASE OXIDOREDUCTASE GLUTAMATE NADP NAD) protein domain (PD000880) which is seen in DHE2_PORGI.Residues 191-436 are 99% similar to a (DEHYDROGENASE OXIDOREDUCTASE GLUTAMATE NADP) protein domain (PD000883) which is seen in DHE2_PORGI.","","Thu Jun 14 11:20:47 MDT 2001","","Thu Jun 14 11:20:47 MDT 2001","Thu Jun 14 11:20:47 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:20:47 MDT 2001","Thu Jun 14 11:20:47 MDT 2001","","","Fri Feb 23 10:39:43 MST 2001","Tue Dec 9 16:52:44 2003","Thu Feb 15 12:05:51 MST 2001","Tue Dec 9 16:52:44 2003","Tue Dec 9 16:52:44 2003","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 15 12:05:51 MST 2001","-73% similar to PDB:1BGV GLUTAMATE DEHYDROGENASE (E_value = 7.3E_148);-73% similar to PDB:1HRD GLUTAMATE DEHYDROGENASE (E_value = 7.3E_148);-73% similar to PDB:1K89 K89L MUTANT OF GLUTAMATE DEHYDROGENASE (E_value = 8.1E_147);-72% similar to PDB:1AUP GLUTAMATE DEHYDROGENASE (E_value = 2.4E_146);-69% similar to PDB:2BMA THE CRYSTAL STRUCTURE OF PLASMODIUM FALCIPARUM GLUTAMATE DEHYDROGENASE, A PUTATIVE TARGET FOR NOVEL ANTIMALARIAL DRUGS (E_value = 1.6E_123);","","","Residues 53 to 183 (E-value = 5.9e-81) place PG1090 in the GLFV_dehydrog_N family which is described as Glu/Leu/Phe/Val dehydrogenase, dimerisation domain (PF02812)Residues 198 to 443 (E-value = 1.7e-127) place PG1090 in the GLFV_dehydrog family which is described as Glutamate/Leucine/Phenylalanine/Valine dehydrogenase (PF00208)","Tue Dec 9 16:52:44 2003","34540940","","Joe,A., Murray,C.S. and McBride,B.C. 1994. Nucleotide sequence of a Porphyromonas gingivalis gene encoding a surface-associated glutamate dehydrogenase and construction of a glutamate dehydrogenase-deficient isogenic mutant. Infect. Immun. 62 (4): 1358-1368. PubMed: 8132343. McBride,B.C., Joe,A. and Singh,U. 1990. Cloning of Bacteroides gingivalis surface antigens involved in adherence. Arch. Oral Biol. 35: 59S-68S. PubMed: 8392971.Joe,A., Yamamoto,A. and McBride,B.C. 1993. Characterization of recombinant and native forms of a cell surface antigen of Porphyromonas (Bacteroides) gingivalis. Infect. Immun. 61 (8): 3294-3303. PubMed: 8392971. ","","Thu Feb 15 12:05:51 MST 2001","","1","","","PG1232" "PG1090.1","1310104","1309826","279","ATGATAAAGCTCCCCTTATCCATCGGTCCGACCTCAAAAACAAGGCCGGCCGGTGAGTGTTCGCTCATCCGAGACACATTTGGATATAATGAGATAGAGATTAAAGGCTATGCTTTTGAGGATGTTTCGGTATGCGTTTTGGCGAGGCTTCGATACCGACAACGACCTCCATTAAACCATCGATGCATGCTGCCTTTGAATCAAGTCAATATACTTAATCTTTTGGCGACGTATTCGGATACTGATTTATGTACTGAAAAAGCTGATATTCGGAAGGGT","","","10510","MIKLPLSIGPTSKTRPAGECSLIRDTFGYNEIEIKGYAFEDVSVCVLARLRYRQRPPLNHRCMLPLNQVNILNLLATYSDTDLCTEKADIRKG","","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No hit found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG1091","1311349","1310396","954","ATGAAGAACATCCTGATTATCGGCTCTACCGGACAGATCGGATCGGAGTTGACTATGGAGTTGAGAAAGCGTTATCCTCAGGGAAACGTTGTAGCGGGTTATATCCCCGGTGCAGAGCCTAAGGGCGAACTACTCGAAAGCGGTCCTGCCGAAATAGTAGACATCACCAATGCCAAGCAAATAGCAGAAGTGGTGGATAAGTATAAAGTAGATACGATTTACAATTTGGCTGCCCTTCTCAGTGCCGTAGCAGAAGCCAAACCTCAGTTAGCATGGCATATTGGTCTGGGAGGACTTTTCAATACACTGGAAGTAGCTCGTGAAAAGAATTGTGCAGTGTTTACGCCCAGCTCTATCGGTGCTTTCGGCAATGATACTCCTAAGGATAAGACCCCCCAGGATACTATTCAGCGTCCCAAGACCATGTACGGAGTAACGAAGGTCAGTGGCGAGCTTTTGAGTGACTACTACCACAAGCGTTTCGGTGTAGATACACGTTCGGTTCGTTTCCCCGGTTTGATCTCCAACGTCACCCTCCCCGGTGGTGGAACGACGGACTATGCCGTGGATATTTATTATGCAGCTGTCAAAGAAGGACGCTTCACTTGTCCGATTAAAGAGGGTACTTATATGGATATGATGTATATGCCCGATGCTCTTCGTGCATGCGTGGAGCTGATGGAAGCTGACCCTGCCCGTCTGGTACATCGCAATTCGTTCAACATCACTGCCATGAGTTTCGAACCCTCGCAGATAGCGGCAGCAGTGAAGAAGCTGGTACCTGATTTTGTTATGAATTACGAAGTCGATCCTCTTCGTCAAGGTATTGCCGAATCGTGGCCAAACTCATTGGATGATTCTTGTGCTCGTAGTGAATGGGATTGGAAGCCGGATTACGATCTCGATTCCATGTCTGCAGATATGATCCAGATACTGAAAGCTCGCTACGGCAAG","5.10","-6.45","35088","MKNILIIGSTGQIGSELTMELRKRYPQGNVVAGYIPGAEPKGELLESGPAEIVDITNAKQIAEVVDKYKVDTIYNLAALLSAVAEAKPQLAWHIGLGGLFNTLEVAREKNCAVFTPSSIGAFGNDTPKDKTPQDTIQRPKTMYGVTKVSGELLSDYYHKRFGVDTRSVRFPGLISNVTLPGGGTTDYAVDIYYAAVKEGRFTCPIKEGTYMDMMYMPDALRACVELMEADPARLVHRNSFNITAMSFEPSQIAAAVKKLVPDFVMNYEVDPLRQGIAESWPNSLDDSCARSEWDWKPDYDLDSMSADMIQILKARYGK","1311403 1310396","TIGR ID: PG1235","conserved hypothetical protein (possible nucleoside diphosphate-sugar epimerase)","Cytoplasm","Several significant and numerous weak hits in gapped BLAST; e.g. residues 93-333 are 60% similar to emb|CAC12786.1| hypothetical protein of Staphylococcus carnosus, residues 22-327 are 47% similar to gb|AAF61395.1|AF134346_1 L-threonine 3-dehydrogenase of Mus musculus, residues 22-335 are 42% similar to emb|CAC12238.1| UDP-glucose 4-epimerase related protein of Thermoplasma acidophilum. This sequence is similar to BT1370.","
InterPro
IPR001509
Family
NAD-dependent epimerase/dehydratase
PF01370\"[4-169]TEpimerase
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.720\"[2-233]TG3DSA:3.40.50.720
PTHR10366\"[6-316]TPTHR10366
PTHR10366:SF12\"[6-316]TPTHR10366:SF12
SSF51735\"[3-313]TSSF51735


","BeTs to 11 clades of COG0451COG name: Nucleoside-diphosphate-sugar epimerasesFunctional Class: M,GThe phylogenetic pattern of COG0451 is AMTKYQVCEBRHUJ--o----Number of proteins in this genome belonging to this COG is 5","No significant hit to the Blocks database.","Residues 54-273 are 45% similar to a (PROTEIN OXIDOREDUCTASE DEHYDROGENASE REDUCTASE NAD NADP) protein domain (PD000038) which is seen in Q22945_CAEEL.","","Thu Jun 14 11:21:26 MDT 2001","","Thu Jun 14 11:21:26 MDT 2001","Thu Jun 14 11:21:26 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:21:26 MDT 2001","Thu Jun 14 11:21:26 MDT 2001","","","Thu Dec 4 13:35:57 2003","Thu Dec 4 13:35:39 2003","Thu Feb 15 12:29:51 MST 2001","","Thu Dec 4 13:35:39 2003","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 15 12:29:51 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 4 to 316 (E-value = 2.8e-07) place PG1091 in the Epimerase family which is described as NAD dependent epimerase/dehydratase family (PF01370)","Thu Jun 14 11:21:26 MDT 2001","34540943","","","","","","1","","","PG1235" "PG1091.1","1311679","1311422","258","GTGATGTGTTGTCATACGAAAAAATATTGTTTTGTTTCAAACAAAAGTATAGTTATTCCGCCTAATCGACAATCCCCACATATAGGTATCTGCTTGAAATCAAATGATTTCGCACTTGATCGTTCTCTTTTCTTATGCTGGTTCGGCTTAAACCCCTTCAAAGAGGGAATGGCATTTATTCGTCAGAATCCTGTGGAGAGGTCTTTGTCTTTCTTTTCGTCTTCATTGATTTTGTACTGCTCTTTAGTCGCATATTTA","","","9826","VMCCHTKKYCFVSNKSIVIPPNRQSPHIGICLKSNDFALDRSLFLCWFGLNPFKEGMAFIRQNPVERSLSFFSSSLILYCSLVAYL","","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No hit found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Thu Feb 15 12:39:01 MST 2001","","Thu Feb 15 12:31:38 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG1092","1311665","1312372","708","ATGACAACACATCACATAAAGAAATCATACTCACCCAATACAAAGCTAAGTGACTTGATATGCGAGAATTACGACTTACTACTGGTCATTACGCGCTTTGGTATTTCGCTTGGTTTCGGAGAAAAGAGCATACGAGAAGTCTGTGAGGACAATAAGGTAAACACCAATACCCTCATGGCTGTAATCAATGCACTTATCAACCGTCCCGAACACCCTTCCGAGACCGTCTTGTCAGATCTGTCAGCTCCTTCCCTGATCAACTATCTGCGAAAGTCGCATAATTATTTTCTCGAATTTCGTCTGCCTTTGCTCCGTCAAGACCTTTTGGCCGCACTGTCCAACTGTCCATCCGAAGTGGTATTCGTCATTCGTCAATTCTATGATGAGTATGTGGAGGAAGTACGCAAGCACATGAGCTACGAAGAGAAAACGGTTTTCCCTTATGTGGAAAAACTTTTGGGCGGAAAGTTGGACAAACGTTCGCACTACAGAATCGATATATTCAGCAAACGCCACGATCAGATAGAGCTGAAGATTTCCGAACTTAAGAACCTGCTGATCAAATACTACCCGACATCGAGTGGCTACGAACTCAACAGCGTTCTGCACGACATATTCTCCTCGGAAGACGATTTGTCAGCACACAACTTTGTCGAAGACCATCTTTTCGTGCCTTTGATTCGTAAAATAGAAAAGGAAAACGGATTA","6.50","-2.72","27455","MTTHHIKKSYSPNTKLSDLICENYDLLLVITRFGISLGFGEKSIREVCEDNKVNTNTLMAVINALINRPEHPSETVLSDLSAPSLINYLRKSHNYFLEFRLPLLRQDLLAALSNCPSEVVFVIRQFYDEYVEEVRKHMSYEEKTVFPYVEKLLGGKLDKRSHYRIDIFSKRHDQIELKISELKNLLIKYYPTSSGYELNSVLHDIFSSEDDLSAHNFVEDHLFVPLIRKIEKENGL","1311665 1312372","TIGR ID: PG1236","hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR012312
Domain
Hemerythrin HHE cation binding region
PF01814\"[85-148]T\"[164-226]THemerythrin


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Feb 15 12:43:51 MST 2001","","Thu Feb 15 12:43:51 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 15 12:43:51 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34540944","","","","","","1","","","PG1236" "PG1093","1312372","1312968","597","ATGAATATCATCACACTCAAGGTAGCGATAGTGGAACCGCTACCTATGATTCGTGCAGGGCTGGAAGCTCTACTGAAGAAAATCACCGGCTACAAGATACAATTCATAGATGCACCCGCCGATAATGGTTGGGTAGATGTAATCTCCTTTTATTGTCCCGATGTCGTTTTCATGAATCCACTCGTATCGGGACTCACCCGAAACGAATCCGACAAGGCATGTCCGCAGTCGCGCTATGTGGGTTTGCTCACTACGCCGATTGACAGCAATATGCTACACAACTATGACGATACACTGTCCGTCCACGCCACAGTAGAGGAATTAAAACAGCTATTGGAAAGACTTTATCAAAAGACCTTGGAACCCGAAGAGAGCGGAGAAGAACAACAGACACTCACCAATCGGGAGAAAGAGATCGTCGTAGGAGTAGTGAAAGGTATGACCAACAAAGAGATTGCCGAAGAGCTTTTCTTATCTACGCATACCGTTATAACCCACCGACGCAACATTGCAAAAAAATTGCAGATTCACAGCCCCAGTGGCTTGACCATCTATGCCATCATGAACAAACTCGTCAATCTCGACGAAATCGCCCAC","5.70","-4.65","22385","MNIITLKVAIVEPLPMIRAGLEALLKKITGYKIQFIDAPADNGWVDVISFYCPDVVFMNPLVSGLTRNESDKACPQSRYVGLLTTPIDSNMLHNYDDTLSVHATVEELKQLLERLYQKTLEPEESGEEQQTLTNREKEIVVGVVKGMTNKEIAEELFLSTHTVITHRRNIAKKLQIHSPSGLTIYAIMNKLVNLDEIAH","1312372 1312968","TIGR ID: PG1237","probable response regulator","Cytoplasm","Numerous weak hits in gapped BLAST; e.g. residues 107-194 are 38% similar to emb|CAB90919.1| putative DNA-binding response regulator of Streptomyces coelicolor A3(2), residues 4-187 are 25% similar to dbj|BAB05932.1| two-component response regulator of Bacillus halodurans, residues 6-193 are 28% similar to pir||E70045 two-component response regulator [YvqE] homolog yvqC of Bacillussubtilis. ","
InterPro
IPR000792
Domain
Bacterial regulatory protein, LuxR
PD000307\"[132-189]THTH_LuxR
PR00038\"[132-146]T\"[146-162]T\"[162-174]THTHLUXR
PF00196\"[129-186]TGerE
SM00421\"[129-186]THTH_LUXR
PS00622\"[146-173]THTH_LUXR_1
PS50043\"[125-190]THTH_LUXR_2
InterPro
IPR010916
Domain
TonB box, N-terminal
PS00430\"[1-104]?TONB_DEPENDENT_REC_1
InterPro
IPR011006
Domain
CheY-like
SSF52172\"[1-157]TCheY_like
InterPro
IPR011991
Domain
Winged helix repressor DNA-binding
G3DSA:1.10.10.10\"[100-196]TWing_hlx_DNA_bd
noIPR
unintegrated
unintegrated
SSF46894\"[110-196]TSSF46894


","BeTs to 3 clades of COG2197COG name: Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domainFunctional Class: T,KThe phylogenetic pattern of COG2197 is -------CEBRh---------Number of proteins in this genome belonging to this COG is 2","***** IPB000792 (Bacterial regulatory protein, LuxR family) with a combined E-value of 4.7e-21. IPB000792 132-178","Residues 132-178 are 61% similar to a (PROTEIN DNA-BINDING TRANSCRIPTION REGULATION REGULATOR) protein domain (PD000307) which is seen in YGEK_ECOLI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Feb 15 13:06:02 MST 2001","Thu Feb 15 12:54:12 MST 2001","Thu Feb 15 12:54:12 MST 2001","Mon May 7 16:57:45 MDT 2001","Thu Feb 15 12:54:12 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 113-193 of PG1093 are 35% similar to PG1254, a response regulator (probable vsrD protein).","Mon Jun 4 12:05:30 MDT 2001","Thu Feb 15 12:54:12 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 129 to 186 (E-value = 6.6e-19) place PG1093 in the GerE family which is described as Bacterial regulatory proteins, luxR family (PF00196)","Mon May 7 16:57:45 MDT 2001","34540945","","","","","","1","","","PG1237" "PG1094","1313672","1312992","681","ATGGAAGTCGTTTACGAAGACAATCATCTGATCATAGTCAATAAGGCTGTCGGGGAGATTGTTCAAGGCGATAAGACTGGTGACAGCCCTCTGTCCGAAACGGTCAAGCAGTGGATCAAAGAGAAATATGTCAAGCCGGGCAAAGTCTTCCTCGGTGTAGCCCATCGTTTGGATCGTCCTGTGGCCGGACTGGTCGTTTTTGCCAAAACGAGTAAGGCTTTGGCGCGACTCAATAATATGTTTCGCGATGGGAAGGTGCAAAAGGTATATCGTGCCATAGTCAAACAAAGACCTCCCAAGGATGGAGATACGCTCGTCCATTATATCAGTCGAAACGAAAGACTGAACAAAAGCTTTGCTTCGGTATGCAAAGTGCCGAACAGTAAGAAGGCTTCTCTCTCTTATCGCTTATTAGCTTCGTCCGACAATTACCATCTTTTGGAAATAGAGCTACATACTGGCCGGCACCATCAGATTCGTTGCCAGCTCGCAACTATGGGTTGTCCTATCAAGGGCGATTTGAAATACGGATTCGGGCGCAGTAATCCGGATGGAGGAATCAGTCTGCTGGCCCATCGAATTCGTTTCACTCATCCTGTCAGCGGCGTTCTCATCGATCTCACCGCTCCTCTTCCCTCGAATGATAAACTTTGGTCTTTGCTTACTTCCAAGGTCGGCGAT","10.60","16.01","25276","MEVVYEDNHLIIVNKAVGEIVQGDKTGDSPLSETVKQWIKEKYVKPGKVFLGVAHRLDRPVAGLVVFAKTSKALARLNNMFRDGKVQKVYRAIVKQRPPKDGDTLVHYISRNERLNKSFASVCKVPNSKKASLSYRLLASSDNYHLLEIELHTGRHHQIRCQLATMGCPIKGDLKYGFGRSNPDGGISLLAHRIRFTHPVSGVLIDLTAPLPSNDKLWSLLTSKVGD","1313672 1312992","TIGR ID: PG1238","probable pseudouridine synthase","Cytoplasm, Periplasm","Numerous significant hits in gapped BLAST; e.g. residues 1-214 are 35% similar to sp|Q45826|YMDA_CHLAU hypothetical protein in MGH 5' region (orfA) of Chloroflexus aurantiacus, residues 3-217 are 30% similar to emb|CAB06297.1| hypothetical protein of Chlorobium vibrioforme, residues 1-217 are 30% similar to sp|P50513|RLUD_ZYMMO ribosomal large subunit pseudouridine synthase D (pseudouridylate synthase) (uracil hydrolyase) of Zymomonas mobilis.","
InterPro
IPR006145
Domain
Pseudouridine synthase
PD001819\"[55-98]TQ8A194_BACTN_Q8A194;
PF00849\"[9-165]TPseudoU_synth_2
InterPro
IPR006224
Family
Pseudouridine synthase, Rlu
PS01129\"[54-68]?PSI_RLU
noIPR
unintegrated
unintegrated
PTHR10436\"[1-218]TRIBOSOMAL PSEUDOURIDINE SYNTHASE


","BeTs to 13 clades of COG0564COG name: Predicted pseudouridylate synthase family 2Functional Class: JThe phylogenetic pattern of COG0564 is ----YqVCEBRHUJGPOLINXNumber of proteins in this genome belonging to this COG is 3","***** IPB002990 (Pseudouridine synthase, Rlu family) with a combined E-value of 1.5e-32. IPB002990A 3-20 IPB002990B 54-92 IPB002990C 153-177","Residues 3-217 are 30% similar to a (PROTEIN PSEUDOURIDINE SYNTHASE RIBOSOMAL) protein domain (PD001819) which is seen in YBC5_CHLVI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Apr 3 13:55:01 MDT 2001","Mon May 7 17:02:52 MDT 2001","Thu Feb 15 13:14:18 MST 2001","Tue Apr 3 13:52:12 MDT 2001","Thu Feb 15 13:14:18 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1-214 are 27% similar to PG0658, a predicted ribosomal large subunit pseudouridine synthase D. Similarities are also seen to PG1486.","Thu Feb 15 13:14:18 MST 2001","Thu Feb 15 13:14:18 MST 2001","-45% similar to PDB:1QYU Structure of the catalytic domain of 23S rRNA pseudouridine synthase RluD (E_value = 5.5E_17);-45% similar to PDB:1V9F Crystal structure of catalytic domain of pseudouridine synthase RluD from Escherichia coli (E_value = 5.5E_17);-45% similar to PDB:2IST crystal structure of RluD from E. coli (E_value = 5.5E_17);-45% similar to PDB:1PRZ Crystal structure of pseudouridine synthase RluD catalytic module (E_value = 7.1E_17);-50% similar to PDB:1V9K The crystal structure of the catalytic domain of pseudouridine synthase RluC from Escherichia coli (E_value = 3.9E_15);","","","Residues 9 to 165 (E-value = 7.5e-33) place PG1094 in the PseudoU_synth_2 family which is described as RNA pseudouridylate synthase (PF00849)","Tue Apr 3 13:52:12 MDT 2001","","","","","","","1","","","PG1238" "PG1095","1314462","1313719","744","ATGAAATTATTGGAGAACAAGGTAGCTCTCATTACGGGAGCCGGACGCGGTATCGGCCGTGCCATAGCTTATAAGTATGCAACGGAAGGTGCCGATGTGGCTATTACTGATCTGAATATCGATGAGGGCGTACAGGCTTTCGTAGAAGAACTCAAAGGGCTCGGAGTACGTGCAGCGGCATACGCTTCCAATGCAGCGGATTTCGATGCAGCACATACAGTGGTGGAACAGATCAAGGCTGACTTCGGTCGGATCGATATTTTGGTGAACAATGCCGGTATTACTCGCGATGGCCTTATGATGCGTATGACCGAGCAACAATGGGATGCCGTGATCAACGTTAATCTGAAGTCAGCGTTCAACATGATCCATGCCGTGACTCCCATCATGATGGGACAGCGCACCGGCAGTATCATCAATATGGCTTCTGTGGTAGGTGTATCAGGCAATGCAGGACAATCCAACTACTCAGCTTCTAAAGCCGGTATGATCGGTTTGGCCAAGAGTGTCGCCAAAGAGCTGGGCTCACGTGGCGTGCGTGCCAATGCGATTGCACCGGGTTTTATCATCACCGATATGACTGCCGTGCTTAGCGAAGAAGTGAAGAAGCAATGGGCGGCACAGATACCTCTGCGTCGTGGTGGTACGCCCGAAGATGTGGCTAACGTAGCTACCTTCCTTGGCAGTGACCTCTCTTCGTACGTGACGGGACAGGTAGTCCACGTTTGTGGCGGTATGAATATG","6.80","-0.33","26021","MKLLENKVALITGAGRGIGRAIAYKYATEGADVAITDLNIDEGVQAFVEELKGLGVRAAAYASNAADFDAAHTVVEQIKADFGRIDILVNNAGITRDGLMMRMTEQQWDAVINVNLKSAFNMIHAVTPIMMGQRTGSIINMASVVGVSGNAGQSNYSASKAGMIGLAKSVAKELGSRGVRANAIAPGFIITDMTAVLSEEVKKQWAAQIPLRRGGTPEDVANVATFLGSDLSSYVTGQVVHVCGGMNM","1314462 1313719","TIGR ID: PG1239","3-oxyacyl [acyl-carrier protein] reductase","Cytoplasm","This sequence is similar to CT237 and CT104 and to BT3771.Numerous significant hits to 3-oxoacyl-[acyl carrier protein] reductase (3-ketoacyl-acyl carrier protein reductase) in gapped BLAST; e.g. residues 4-246 are 49% similar to gb|AAD36790.1|AE001811_10 3-oxoacyl-(acyl carrier protein) reductase of Thermotoga maritima, residues 3-248 are 48% similar to dbj|BAB06210.1| 3-oxoacyl-(acyl-carrier protein) reductase of Bacillus halodurans, residues 3-248 are 46% similar to sp|P51831|FABG_BACSU 3-oxoacyl-[acyl carrier protein] reductase (3-ketoacyl-acyl carrier protein reductase) of Bacillus subtilis.","
InterPro
IPR002198
Family
Short-chain dehydrogenase/reductase SDR
PR00080\"[83-94]T\"[136-144]T\"[156-175]TSDRFAMILY
PTHR19410\"[2-244]TADH_short_C2
PF00106\"[7-175]Tadh_short
PS00061\"[143-171]TADH_SHORT
InterPro
IPR002347
Family
Glucose/ribitol dehydrogenase
PR00081\"[8-25]T\"[83-94]T\"[130-146]T\"[156-175]T\"[177-194]T\"[210-230]TGDHRDH
InterPro
IPR011284
Family
3-oxoacyl-(acyl-carrier-protein) reductase
TIGR01830\"[9-247]T3oxo_ACP_reduc
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.720\"[4-246]TG3DSA:3.40.50.720
PTHR19410:SF87\"[2-244]TPTHR19410:SF87
SSF51735\"[5-246]TSSF51735


","BeTs to 12 clades of COG1028COG name: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)Functional Class: RThe phylogenetic pattern of COG1028 is a--KYQVCEBRHUJ----inXNumber of proteins in this genome belonging to this COG is 3","***** PR01397 (2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature) with a combined E-value of 6.8e-21. PR01397A 13-30 PR01397B 86-103 PR01397C 106-126 PR01397D 171-194 PR01397F 226-245***** IPB002198 (Short-chain dehydrogenase/reductase (SDR) superfamily) with a combined E-value of 1.2e-15. IPB002198 136-171","Residues 115-193 are 39% similar to a (MOAE PROTEIN OXIDOREDUCTASE) protein domain (PD058547) which is seen in MOAE_KLEAE.Residues 27-193 are 50% similar to a (PROTEIN OXIDOREDUCTASE DEHYDROGENASE REDUCTASE NAD NADP) protein domain (PD000038) which is seen in FABG_BACSU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Mar 22 11:08:06 MST 2000","Fri Dec 26 13:39:07 2003","Thu Feb 15 15:43:14 MST 2001","Fri Mar 9 15:33:42 MST 2001","Thu Feb 15 15:43:14 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 9-245 are 28% similar to PG1808, a predicted 3-oxoacyl-(acyl-carrier-protein) reductase. Similarities are also seen to PG0608, a predicted short-chain dehydrogenase.","Thu Feb 15 15:43:14 MST 2001","","-64% similar to PDB:2HQ1 Crystal Structure of ORF 1438 a putative Glucose/ribitol dehydrogenase from Clostridium thermocellum (E_value = 4.3E_58);-61% similar to PDB:1I01 CRYSTAL STRUCTURE OF BETA-KETOACYL [ACYL CARRIER PROTEIN] REDUCTASE FROM E. COLI. (E_value = 6.6E_51);-61% similar to PDB:1Q7B The structure of betaketoacyl-[ACP] reductase from E. coli in complex with NADP+ (E_value = 6.6E_51);-61% similar to PDB:1Q7C The structure of betaketoacyl-[ACP] reductase Y151F mutant in complex with NADPH fragment (E_value = 1.9E_50);-58% similar to PDB:2C07 OXOACYL-ACP REDUCTASE OF PLASMODIUM FALCIPARUM (E_value = 6.2E_49);","","","Residues 9 to 246 (E-value = 9.7e-93) place PG1095 in the adh_short family which is described as short chain dehydrogenase (PF00106)","Fri Mar 9 15:33:42 MST 2001","34540946","","","","","","1","","","PG1239" "PG1096","1315154","1314549","606","ATGATCGATGTAGCACGTCAGCTCTTTGCCAAGATCGGTGTGGAGAAGACCACGATGAACGACATCGCCGATGCGGCAAACAAGGGACGACGCACGCTATATACTTACTTCAAAAGCAAAAAAGATATCTATTTTGCCGTTGTCCATAAGGAGCTGGACGAACTCTACAGCTCGTTGGAGACTGCTGCTCTCGTGTCTATGCCGCCGACTAAGAAGCTGATGCACTTCATCTATACGCATTTGGAAGCAATCAAAGAGATTGTCGTGCGCAATGGTACGCTTCGTGCCGATTTTTTTCGTGATATATGGAAGGTGGAGACTGCTCGTAAGGAGTTCGACCTCAAGGAAGAACATCTGATCTGTTCCATTTTGGACGAAGGTGTTCGGCTTAATGCGTTTTCTATACCCGATACCCATATTACCGCCAAGATCTTACTCCACTCAATCAAGGGGCTGGAAGTGCCGTATATCAGCGGACATCTTAGGCATGCCGGAACGATCGCGTTCGAGCGAATCAGTGAGAATGTGGAGCATCTGATCTTCCACGGTATCTGTCTCTCTCCGGCAGTAAACAGCGGTGAAGAAGAGATTGGAAGTGAAAGTGTT","6.70","-1.68","22884","MIDVARQLFAKIGVEKTTMNDIADAANKGRRTLYTYFKSKKDIYFAVVHKELDELYSSLETAALVSMPPTKKLMHFIYTHLEAIKEIVVRNGTLRADFFRDIWKVETARKEFDLKEEHLICSILDEGVRLNAFSIPDTHITAKILLHSIKGLEVPYISGHLRHAGTIAFERISENVEHLIFHGICLSPAVNSGEEEIGSESV","1315181 1314549","TIGR ID: PG1240","conserved hypothetical protein (probable transcription regulator)","Cytoplasm","Several weak hits in gapped BLAST; e.g. residues 5-78 are 39% similar to emb|CAB62706.1| putative transcriptional regulator of Streptomyces coelicolor A3(2), residues 1-159 are 25% similar to gb|AAC06593.1| transcriptional regulator (TetR/AcrR family) of Aquifex aeolicus, residues 5-104 are 35% similar to gb|AAG58392.1|AE005554_3 putative transcriptional regulator of Escherichia coli O157:H7.","
InterPro
IPR001647
Domain
Bacterial regulatory protein, TetR
PR00455\"[1-14]T\"[22-45]THTHTETR
PF00440\"[1-47]TTetR_N
PS50977\"[1-55]THTH_TETR_2
InterPro
IPR009057
Domain
Homeodomain-like
SSF46689\"[1-73]THomeodomain_like
InterPro
IPR012287
Domain
Homeodomain-related
G3DSA:1.10.10.60\"[1-47]THomeodomain-rel


","BeTs to 7 clades of COG1309COG name: Transcriptional regulators, AcrR familyFunctional Class: KThe phylogenetic pattern of COG1309 is a-T--QVCEBRH---------Number of proteins in this genome belonging to this COG is 3","***** IPB001647 (Bacterial regulatory proteins, TetR family) with a combined E-value of 1.7e-13. IPB001647 5-44","No significant hit to the ProDom database.","","Thu Jun 14 11:22:25 MDT 2001","","Thu Jun 14 11:22:25 MDT 2001","Thu Jun 14 11:22:25 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:22:25 MDT 2001","Thu Jun 14 11:22:25 MDT 2001","","","Fri Feb 23 10:53:45 MST 2001","Thu Feb 15 15:51:50 MST 2001","Thu Feb 15 15:51:50 MST 2001","Fri Feb 23 10:53:45 MST 2001","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 15 15:51:50 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 1 to 47 (E-value = 8.8e-15) place PG1096 in the TetR_N family which is described as Bacterial regulatory proteins, tetR family (PF00440)","Thu Jun 14 11:22:25 MDT 2001","34540947","","","","","","1","","","PG1240" "PG1097","1315756","1317540","1785","ATGAAGAATATCCGCAACTTCTGCATCATTGCACATATCGACCACGGCAAGAGTACCTTGGCCGATCGGTTGCTCGAATATACCAACACCGTCTCCGGCAAAGATCTGCAAGATCAGGTCTTGGACAATATGGACTTGGAACGAGAGAGAGGTATAACGATCAAGAGCCATGCCATTCAGATGGACTATGAGATGGATGGAGAAAAGTATGTGCTCAACCTGATCGATACTCCGGGGCACGTGGACTTCTCCTACGAAGTCTCTCGCTCCATTGCTGCTTGCGAAGGGGCATTGCTTATCGTCGATGCTGCCCAAGGGATACAGGCGCAGACCATATCCAATCTCTATATGGCGATCGAAAACGACCTGACCATCATCCCTATTGTAAACAAAGTGGATTTGCCCAGTGCCATGCCCGAAGAGGTGGAAGACCAGATCATCGAGCTTTTGGGTTGCGATCGTTCGGAGATCATCCGCGCCAGTGGCAAGACCGGTCAGGGAGTAGATCAGATCCTTCGCGCCATCGTAGAGCAAGTACCGGCCCCTGCCGGAGACCCCGATGCCCCGCTGCAATGCCTCATTTTCGATTCGGTCTTCAATCCGTTCCGTGGTATCATCGCCTATTTTAAGGTGGTGAATGGCAGTATTCGCAAAGGAGACCATGTCAAGTTTATTGCCACCGAGAAAGAATACGATGCCGATGAAGTAGGAGTACTCAGGCTCGATATGGAGCCGCGCTCGGAGGTCAAGACCGGCGATGTAGGCTACATCATCAGCGGTATCAAAACAAGCCGCGAGGTCAAGGTCGGCGATACGATCACCCACGTAGCCAAGCCGGCCAAAGAGGCTATAGCTGGATTCGAAGAGGTAAAACCCATGGTCTTCGCCGGTGTATATCCGATCGAAGCAGAAGACTTCGAGAACTTGCGTGCTTCCTTGGAGAAACTCCAACTCAACGATGCTTCGCTGACGTTTCAGCCCGAAAGTTCGGTGGCTCTCGGATTCGGATTTCGTTGCGGATTTCTCGGTTTGCTCCACATGGAGATCGTGCAGGAGCGATTGGATCGGGAGTTCAATATGAATGTGATCACGACGGTGCCCAACGTTTCTTATAAGGTGTACGACAAGAAAGGTGGCTGCAAAGAGGTTCACAATCCATCGGGACTGCTCGAACCCACGCTTATAGATCATATAGAAGAACCCTTCATCAGAGCTTCTGTCATCACCAATACGGCCTATATCGGCCCTATCATGACACTTTGTTTGGGCAAAAGAGGGGTGTTGGTGAAGCAAGAATATATATCGGGCGATCGTGTAGAGATCTTCTACGATCTTCCATTGGGCGAAATCGTCATCGACTTCTACGACAAACTAAAGAGTATCTCCAAAGGATATGCTTCATTCGACTATCACCTGCACGACTTTAGAGAGAGCAAGCTGGTAAAGCTCGATATTCTGCTCAATGGCGAACCCGTCGATGCCCTGTCTACACTCACACACGTGGACAACAGTGTCACATTCGGCCGACGCATGTGCGAAAAGCTCAAAGAACTCATCCCGCGTCAGCAATTCGAAATAGCCATCCAAGCAGCTATCGGAGCCAAGATCATCGCTCGCGAAACGATCAAGCCTGTCCGTAAGGATGTGACGGCCAAGTGCTATGGTGGCGATATCTCCCGTAAGCGTAAGCTGCTCGAAAAGCAGAAAGAAGGAAAGAAACGCATGAAGCAGATAGGCACGGTCGAAGTGCCTCAGAAGGCTTTCCTCGCTGTCCTCAAACTGGAC","5.40","-13.46","66346","MKNIRNFCIIAHIDHGKSTLADRLLEYTNTVSGKDLQDQVLDNMDLERERGITIKSHAIQMDYEMDGEKYVLNLIDTPGHVDFSYEVSRSIAACEGALLIVDAAQGIQAQTISNLYMAIENDLTIIPIVNKVDLPSAMPEEVEDQIIELLGCDRSEIIRASGKTGQGVDQILRAIVEQVPAPAGDPDAPLQCLIFDSVFNPFRGIIAYFKVVNGSIRKGDHVKFIATEKEYDADEVGVLRLDMEPRSEVKTGDVGYIISGIKTSREVKVGDTITHVAKPAKEAIAGFEEVKPMVFAGVYPIEAEDFENLRASLEKLQLNDASLTFQPESSVALGFGFRCGFLGLLHMEIVQERLDREFNMNVITTVPNVSYKVYDKKGGCKEVHNPSGLLEPTLIDHIEEPFIRASVITNTAYIGPIMTLCLGKRGVLVKQEYISGDRVEIFYDLPLGEIVIDFYDKLKSISKGYASFDYHLHDFRESKLVKLDILLNGEPVDALSTLTHVDNSVTFGRRMCEKLKELIPRQQFEIAIQAAIGAKIIARETIKPVRKDVTAKCYGGDISRKRKLLEKQKEGKKRMKQIGTVEVPQKAFLAVLKLD","1315756 1317540","TIGR ID: PG1241","GTP-binding protein (possible membrane protein)","Cytoplasm","Numerous significant hits to GTP-binding protein in gapped BLAST; e.g. residues 4-595 are 54% similar to emb|CAB14493.1| GTP-binding protein of Bacillus subtilis, residues 4-595 are 53% similar to dbj|BAB05061.1| GTP-binding protein (elongation factor family) of Bacillus halodurans, residues 2-595 are 55% similar to gb|AAK05206.1|AE006343_2 GTP-binding protein LepA of Lactococcus lactis subsp. lactis.This sequence is similar to BT0632.","
InterPro
IPR000640
Domain
Translation elongation factor EFG/EF2, C-terminal
G3DSA:3.30.70.240\"[400-490]TTransl_elong_EFG/EF2_C
PF00679\"[397-486]TEFG_C
InterPro
IPR000795
Domain
Protein synthesis factor, GTP-binding
PR00315\"[6-19]T\"[49-57]T\"[73-83]T\"[89-100]T\"[125-134]TELONGATNFCT
PF00009\"[2-183]TGTP_EFTU
InterPro
IPR001806
Family
Ras GTPase
PR00449\"[63-85]T\"[121-134]T\"[157-179]TRASTRNSFRMNG
InterPro
IPR004161
Domain
Translation elongation factor EFTu/EF1A, domain 2
PF03144\"[204-274]TGTP_EFTU_D2
InterPro
IPR005225
Domain
Small GTP-binding protein domain
TIGR00231\"[2-177]Tsmall_GTP
InterPro
IPR006297
Family
GTP-binding protein LepA
TIGR01393\"[2-595]TlepA
InterPro
IPR009000
Domain
Translation elongation and initiation factors/Ribosomal, beta-barrel
SSF50447\"[165-284]TTranslat_factor
InterPro
IPR009022
Domain
Elongation factor G, III and V
SSF54980\"[290-369]T\"[400-523]TEFG_III_V
InterPro
IPR013842
Domain
GTP-binding protein LepA, C-terminal
PF06421\"[487-595]TLepA_C
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[1-211]TG3DSA:3.40.50.300
PTHR23115\"[1-307]TPTHR23115
PTHR23115:SF40\"[1-307]TPTHR23115:SF40
SSF52540\"[2-198]TSSF52540


","BeTs to 13 clades of COG0481COG name: Membrane GTPase LepAFunctional Class: NThe phylogenetic pattern of COG0481 is ----yqvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB000795 (GTP-binding elongation factor) with a combined E-value of 1.1e-27. IPB000795A 6-21 IPB000795B 75-106 IPB000795C 496-520***** IPB000178 (Initiation factor 2) with a combined E-value of 1e-07. IPB000178C 72-118 IPB000178D 135-188","Residues 185-253 are 44% similar to a (PROTEIN GTP-BINDING FACTOR ELONGATION BIOSYNTHESIS G) protein domain (PD000509) which is seen in LEPA_BACSU.Residues 254-332 are 53% similar to a (GTP-BINDING PROTEIN LEPA GTPASE) protein domain (PD004660) which is seen in LEPA_MYCTU.Residues 478-593 are 65% similar to a (GTP-BINDING PROTEIN LEPA GTPASE) protein domain (PD004661) which is seen in LEPA_BACSU.Residues 346-475 are 48% similar to a (PROTEIN GTP-BINDING BIOSYNTHESIS ELONGATION FACTOR EF-2) protein domain (PD000296) which is seen in LEPA_BORBU.Residues 165-279 are 28% similar to a (PROTEIN GTP-BINDING PUTATIVE TYPA/BIPA HOMOLOG 5') protein domain (PD103945) which is seen in O06563_MYCTU.Residues 2-52 are 78% similar to a (PROTEIN GTP-BINDING FACTOR ELONGATION BIOSYNTHESIS TU) protein domain (PD000122) which is seen in Q9ZHZ8_MYCHY.Residues 16-179 are 56% similar to a (PROTEIN GTP-BINDING LIPOPROTEIN PRENYLATION RAS-RELATED) protein domain (PD000015) which is seen in LEPA_BORBU.Residues 53-150 are 64% similar to a (PROTEIN GTP-BINDING FACTOR BIOSYNTHESIS ELONGATION TU) protein domain (PD000134) which is seen in LEPA_SYNY3.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Mar 22 10:17:42 MST 2000","Tue Dec 2 17:26:48 2003","Thu Feb 15 17:14:10 MST 2001","Tue Feb 20 08:49:27 MST 2001","Tue Dec 2 17:26:48 2003","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1-357 are 32% similar to PG0553, a predicted GTP-binding elongation factor family protein. Similarities are also seen to PG1692, PG0353, PG0188, PG0230, PG0832, several of which are elongation factor proteins. ","Thu Feb 15 17:14:10 MST 2001","Thu Feb 15 17:14:10 MST 2001","-61% similar to PDB:1N0U Crystal structure of yeast elongation factor 2 in complex with sordarin (E_value = 1.9E_24);-61% similar to PDB:1N0V Crystal structure of elongation factor 2 (E_value = 1.9E_24);-61% similar to PDB:1S1H Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1H, Contains 40S subunit. The 60S Ribosomal Subunit Is In File 1S1I. (E_value = 1.9E_24);-61% similar to PDB:1U2R Crystal Structure of ADP-ribosylated Ribosomal Translocase from Saccharomyces cerevisiae (E_value = 1.9E_24);-61% similar to PDB:1ZM2 Structure of ADP-ribosylated eEF2 in complex with catalytic fragment of ETA (E_value = 1.9E_24);","","","Residues 2 to 183 (E-value = 1.1e-69) place PG1097 in the GTP_EFTU family which is described as Elongation factor Tu GTP binding domain (PF00009)Residues 204 to 274 (E-value = 5.7e-09) place PG1097 in the GTP_EFTU_D2 family which is described as Elongation factor Tu domain 2 (PF03144)Residues 397 to 486 (E-value = 1.3e-30) place PG1097 in the EFG_C family which is described as Elongation factor G C-terminus (PF00679)Residues 487 to 595 (E-value = 1.7e-82) place PG1097 in the LepA_C family which is described as GTP-binding protein LepA C-terminus (PF06421)","Tue Dec 2 17:26:48 2003","34540948","","","Homuth,G., Heinemann,M., Zuber,U. and Schumann,W. 1996. The genes of lepA and hemN form a bicistronic operon in Bacillus subtilis. Microbiology 142 (Pt 7): 1641-1649. PubMed: 8757728.","","Tue Feb 20 08:49:27 MST 2001","1","","","PG1241" "PG1098","1317578","1319161","1584","ATGGCCACAACGAAGTCCCGCACCAAACGTCCTGCTCCGGAGAGCATCACAGCTCCTTTGGAGGGACGTGTTCCGCCACAGGCTCCCGAACTGGAGGAGGCTGTTTTGGGGGCTATCCTGCTGGAAAAAGATGCCTATATGCAAGTGGGCGAAATGCTGCGTCCCAGTACTTTCTACCTCAAAACCCATGAACTGATCTACGAGGCCATTACGCAGCTGGCACTCAATCAGAAGCCCGTGGATATGCTCACGGTGACGGAGCAGCTCAAAAAGAACGGCAATCTCGATGCGGTCGGCGGCCCCTCTTATATAGCCGGCCTGACGCTGAAAGTGGCAAGCTCAGCCAACTTGGAATTTCATGCCAAGATATTGGCACAGAAAGCTTTGAGCCGTGAGGTAATCGGCTTTTCCAGCGAAGTTCTGAAGAAAGCTTACGACGATACGGAGGACATCGAAGATCAGTTGCAGCAGGCCGAGGGACGATTGTTCGAGATCTCCCAACACAACATGAAGCAGGACGTCCAGCCTATCGACCCGATTATCAAAGAGGCCTTGGGCGAAATCCAGATTGCAGCCAACCGTAAGGAAGGACTCAGCGGTCAGCCATCCGGTTTCCCTGCCATCGACAAGCTCACGGCCGGTTGGCAGGCTTCCGATCTGATCATCATTGCTGCCCGTCCTGCTATGGGAAAGACCGCATTCGTGCTTTCCATGGCCAAAAATATGGCTATCGACTATAATATACCCGTAGCCATATTCAATTTGGAAATGAGCAGTGTACAGCTCGTCAAGCGTCTGATGTCCAATGTCTGCGAGATTCCGGGTGAGAAGTTGAAGACCGGTCGACTCGAATCACACGAATGGGTACAGCTCGATACCAAGCTGAAAGACTTCGAAAACAAACCCCTCTACATAGACGACACTCCTTCCCTTTCCGTCTTCGAACTGCGTACCAAATCGCGCCGTCTGGTGCGCGAGTACGGCGTGAAGGTGATCATCATCGACTACCTTCAGCTCATGAACGCGAGCGGAATGTCGTTCGGCAATCGTGAACAGGAAGTCAGTACCATCTCACGCTCTCTCAAGGTTTTAGCCAAGGAACTGAAGATACCCATCATCGCTCTCTCCCAGCTCAACCGAAGTGTGGAGACCCGTCAGGGCGACATCAACAGCAAACGTCCGCAACTATCCGACTTGCGCGAATCCGGAGCCATCGAACAGGATGCCGATATGGTATGCTTCATCCATCGCCCCGAATACTACAAGATCACGGAAGACCAGCAGGGCAACTCCCTTTTGGGCATAGGCGAATTTATCATCGCCAAGCATCGTAATGGTCCTGTGGATGATGTACGTTTGCGCTTCCGCAGCGAGTTTGCCAAGTTCCTACCTCTTGAGGCCGAGAGCATGGTCAAACGCCATTCCCGTATCGGAGGCTCACCCGTGGAAATGGGTGTCGGCAACGGATCGTTCGCCCCTCCCCTACCTCCACCGGAGGACAATCCCCTCCTTTCAGGCCCCTATTCTTCCGGCACATCCGAGGCCGATTTCCTCGCCGAAGCATCGGGAATCGACAACCCTTTC","5.40","-8.35","58367","MATTKSRTKRPAPESITAPLEGRVPPQAPELEEAVLGAILLEKDAYMQVGEMLRPSTFYLKTHELIYEAITQLALNQKPVDMLTVTEQLKKNGNLDAVGGPSYIAGLTLKVASSANLEFHAKILAQKALSREVIGFSSEVLKKAYDDTEDIEDQLQQAEGRLFEISQHNMKQDVQPIDPIIKEALGEIQIAANRKEGLSGQPSGFPAIDKLTAGWQASDLIIIAARPAMGKTAFVLSMAKNMAIDYNIPVAIFNLEMSSVQLVKRLMSNVCEIPGEKLKTGRLESHEWVQLDTKLKDFENKPLYIDDTPSLSVFELRTKSRRLVREYGVKVIIIDYLQLMNASGMSFGNREQEVSTISRSLKVLAKELKIPIIALSQLNRSVETRQGDINSKRPQLSDLRESGAIEQDADMVCFIHRPEYYKITEDQQGNSLLGIGEFIIAKHRNGPVDDVRLRFRSEFAKFLPLEAESMVKRHSRIGGSPVEMGVGNGSFAPPLPPPEDNPLLSGPYSSGTSEADFLAEASGIDNPF","replicative DNA helicase","In E.coli, the DnaB protein is involved in initiation and elongation during chromosome replication. It is a homomeric enzyme. DnaB has also been shown to be found on the 7.5 kb C. trachomatis plasmid. See Comanducci M. et al., 1988 and 1990 (PubMed: ???NOT_FOUND and 2194229), Sriprakash and Pearce, 1990 (PubMed: ???NOT_FOUND), and Hatt C. et al., 1988 (PubMed: ???NOT_FOUND).TIGR ID: PG1242","replicative DNA helicase","Cytoplasm","Numerous significant hits using gapped BLAST to replicative DNA helicases from e.g., Bacillus stearothermophilus (gi: 4416322), B. subtilis (gi: 585057 and 1096851), Neisseria meningitidis (gi: 7226124), among others.This sequence is similar to CT497, a predicted DNA helicase, and toBT0625.","
InterPro
IPR007692
Family
DnaB helicase
TIGR00665\"[20-462]TDnaB
InterPro
IPR007693
Domain
DnaB-like helicase, N-terminal
G3DSA:1.10.860.10\"[25-127]TDnaB_N
PF00772\"[24-126]TDnaB
InterPro
IPR007694
Domain
DnaB-like helicase, C-terminal
PD332834\"[303-416]TDnaB_C
PF03796\"[197-399]TDnaB_C
PS51199\"[194-469]TSF4_HELICASE
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[184-453]TG3DSA:3.40.50.300
SSF48024\"[22-135]TSSF48024
SSF52540\"[184-468]TSSF52540


","BeTs to 12 clades of COG0305COG name: Replicative DNA helicaseFunctional Class:� LThe phylogenetic pattern of COG0305 is -----qvCeBRhujgpOlinxNumber of proteins in this genome belonging to this COG is 1","***** PF00772 (DnaB-like helicase) with a combined E-value of 2.1e-78. PF00772A 200-241 PF00772B 250-288 PF00772C 331-340 PF00772D 348-399 PF00772E 437-455","Residues 51-399 are 46% similar to a (HELICASE DNA REPLICATIVE REPLICATION) protein domain (PD002663) which is seen in O50478_RHOMR.Residues 404-462 are 57% similar to a (HELICASE DNA REPLICATIVE REPLICATION) protein domain (PD003017) which is seen in O30477_RHOMR.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","Wed Mar 22 10:58:36 MST 2000","Tue Dec 2 17:20:56 2003","Wed Mar 22 10:58:36 MST 2000","Tue Dec 2 17:20:56 2003","Tue Dec 2 17:20:56 2003","Tue Dec 2 17:20:56 2003","Tue Dec 2 17:20:56 2003","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Mon Apr 10 15:32:52 MDT 2000","Tue Dec 2 17:20:56 2003","-64% similar to PDB:1JWE NMR Structure of the N-Terminal Domain of E. Coli Dnab Helicase (E_value = 7.4E_17);-63% similar to PDB:1B79 N-TERMINAL DOMAIN OF DNA REPLICATION PROTEIN DNAB (E_value = 9.0E_15);","","","Residues 24 to 126 (E-value = 6.8e-34) place PG1098 in the DnaB family which is described as DnaB-like helicase N terminal domain (PF00772)Residues 197 to 399 (E-value = 1.7e-105) place PG1098 in the DnaB_C family which is described as DnaB-like helicase C terminal domain (PF03796)","Tue Dec 2 17:20:56 2003","34540949","","","Kaplan,D.L. and Steitz,T.A. 1999. DnaB from Thermus aquaticus unwinds forked duplex DNA with an asymmetric tail length dependence. J. Biol. Chem. 274(11): 6889-6897. PubMed: .Sakamoto,Y., Nakai,S., Moriya,S., Yoshikawa,H. and Ogasawara,N. 1995. The Bacillus subtilis dnaC gene encodes a protein homologous to the DnaB helicase of Escherichia coli. Microbiology 141(Pt 3): 641-644. PubMed: 7711902.Nakayama,N., Arai,N., Bond,M.W., Kaziro,Y. and Arai,K. 1984. Nucleotide sequence of dnaB and the primary structure of the dnaB protein from Escherichia coli. J. Biol. Chem. 259(1): 97-101. PubMed: 6323420.","","Mon Apr 10 15:32:52 MDT 2000","1","","","PG1242" "PG1098.1","1319543","1319262","282","TTGAAAACGATTTATATACAAAACGAAAACGATCTATATATTTATCGTAAACTGTTTGTATATAGATCGTTATCTTCTCTTCCAAAAATCATATTTCGACTTGAAAAAGTCCGTATCCTCAACTTTTCGACTTCAATGTCCACTTCCTTTCACTTGCTTATTTGGAATCATTCCAAACTCCTCTTCGTTGTTGAAAACTTTTTTGGCACGTGTTTAGCCTCAGTTCGATCTGTCTATATACCGTGGTTTCGTCTTTGCTCCGAACCCTATCTAGTTGTCCCA","","","11211","LKTIYIQNENDLYIYRKLFVYRSLSSLPKIIFRLEKVRILNFSTSMSTSFHLLIWNHSKLLFVVENFFGTCLASVRSVYIPWFRLCSEPYLVVP","","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
tmhmm\"[60-80]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG1099","1319677","1320759","1083","ATGGCATACCAATCCAAGAATACCGATGAGCATGTAACATTTGCAGACGCACTCCTTTCAAAGCGTTATCGCAAAGCACAAAACGACTTCCTCAATCAGGTTGAGAGGCTTATCGATTGGCGTCCGATCAGGACGCTGATCAACAAGAAATACACGAAGCGACAAAATGCCATCGGCGCCCCGGCTTATGACGTGATTCTCTTATTCAAGATGTTGCTTTTGGAGACATGGTACAACCTCAGTGATTGTGCTTTGGAGGAGCGCATCAATGATTCAATCACCTTTTCCCGATTCTTGGGACTGAAGATGGAAGAGGTATCTCCCGACCACAGCACCATCAGTCGATTTCGTTCGGCACTGACAGAGTTGGGGCTCATGGACAAACTATTGGCGCAGTTTAACAAACAACTTTCCCGCCATCACATTTCGGTCAGGGAAGGGGTGCTTGTCGATGCAAGCCTTGTGGAGACGCCACATAAACCCAACGGAACCATTACGATTGAAGTCGCAGACGACAGAGAAGACAATCGGAGCGAGGCGGAAAAAGAGGCAGAGGAGGATTATCAAAAACAGGTTGTCCGCCGGCGTAAAGGGACGGATGAAGAAGCCCGTTGGGTGTACAAACAAAAGCGTTATCACTACGGATACAAAAAGCATTGTCTGACCAATGTTCAAGGCATTGTTCAAAAGGTGATAACGACwGCAGCGAACCGCAGTGACACGAAGGAGTTTATTCCGCTATTGCAGGGTGCAAACATACCTCAAGGCACAGCCGTCTTGGCGGACAAAGGATATGCTTGCGGGGAAAATCGTTCCTACCTGCAAACCCATCACCTTCAAGACGGCATCATGCACAAGGCACAACGCAACAGGGCATTGACCGAGGAAGAGAAGCAAGGAAACAAAGCAATCAGTCCGATACGGAGCACCATCGAACGCACCTTTGGCAGTATTCGCCGGTGGTTTCATGGCGGACGATGTCGATACCGGGGACTTGCCAAGACCCATACTCAAAACATTCTTGAAAGCATCGCCTTTAATTTATACAGAACCCCGGGGATAATTATGTCCTCATCTCTAGGA","10.20","14.72","88470","MAYQSKNTDEHVTFADALLSKRYRKAQNDFLNQVERLIDWRPIRTLINKKYTKRQNAIGAPAYDVILLFKMLLLETWYNLSDCALEERINDSITFSRFLGLKMEEVSPDHSTISRFRSALTELGLMDKLLAQFNKQLSRHHISVREGVLVDASLVETPHKPNGTITIEVADDREDNRSEAEKEAEEDYQKQVVRRRKGTDEEARWVYKQKRYHYGYKKHCLTNVQGIVQKVITTAANRSDTKEFIPLLQGANIPQGTAVLADKGYACGENRSYLQTHHLQDGIMHKAQRNRALTEEEKQGNKAISPIRSTIERTFGSIRRWFHGGRCRYRGLAKTHTQNILESIAFNLYRTPGIIMSSSLG","1319677 1320759","Member of the IS5 family of elements. A full-length ISPg1 element.TIGR ID: PG1244","ISPg1 transposase (IS1106-related transposase)","Cytoplasm","PG1099 is equivalent to the previously sequenced AB015879 in GenBANK. See also AJ130872. Residues 31-350 are 34% similar to the IS1106 transposase of N.meningitidis (AE002488).","
InterPro
IPR002559
Domain
Transposase, IS4-like
PF01609\"[147-348]TTransposase_11


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 157-302 are 97% similar to a (TRANSPOSASE PLASMID PROTEIN ELEMENT) protein domain (PD004652) which is seen in Q9ZAD0_PORGI.Residues 12-109 are 98% similar to a (TRANSPOSASE PROTEIN INSERTION ELEMENT) protein domain (PD007264) which is seen in Q9ZAD0_PORGI.Residues 303-361 are 96% similar to a (TRANSPOSASE ORF7 INSERTION SEQUENCE IS1126-LIKE GENE) protein domain (PD187845) which is seen in Q9ZAD0_PORGI.Residues 110-156 are identical to a (TRANSPOSASE ORF7 INSERTION SEQUENCE IS1126-LIKE GENE) protein domain (PD187846) which is seen in Q9ZA61_PORGI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","Tue Feb 6 13:34:52 MST 2001","Tue Feb 6 13:34:52 MST 2001","","Fri Feb 16 11:30:04 MST 2001","Tue Feb 13 18:51:35 MST 2001","Tue Feb 13 18:51:35 MST 2001","Wed Jan 3 12:11:30 2001","","Tue Feb 13 18:51:35 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1099 is virtually identical to PG1267, PG0169, PG1050, PG1062, PG0740, PG0918, PG1422, PG0420, PG0499, and PG1662.Partial similarities exist to PG0732, PG0842, PG1607, PG0731, PG0884, PG1184, PG1087, PG0763, PG1755, PG0686, PG0756, PG1798, PG1230, PG1919, PG0044, PG0689, PG1215, PG1665, PG0839, PG1895, PG0883, PG11231, PG0730, PG1159 and PG1608. ","Fri Feb 16 11:30:04 MST 2001","Tue Feb 13 18:51:35 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 147 to 348 (E-value = 9.4e-36) place PG1099 in the Transposase_11 family which is described as Transposase DDE domain (PF01609)","","34540950","","Hanley,S.A., Aduse-Opoku,J. and Curtis,M.A.A 55-kilodalton immunodominant antigen of Porphyromonas gingivalisW50 has arisen via horizontal gene transferInfect. Immun. 67 (3), 1157-1171 (1999), PubMed: .Maley,J. and Roberts,I.S.Characterisation of IS1126 from Porphyromonas gingivalis W83: a new member of the IS4 family of insertion sequence elementsMicrobiol. Lett. 123 (1-2), 219-224 (1994), PubMed: .Shibata,Y., Hayakawa,M., Takiguchi,H., Shiroza,T. and Abiko,Y.Determination and characterization of the hemagglutinin-associatedshort motifs found in Porphyromonas gingivalis multiple geneproducts. J. Biol. Chem. 274 (8), 5012-5020 (1999), PubMed: .","Knight,A.I., Ni,H., Cartwright,K.A. and McFadden,J.J.Identification and characterization of a novel insertion sequence, IS1106, downstream of the porA gene in B15 Neisseria meningitidis.Mol. Microbiol. 6 (11), 1565-1573 (1992), PubMed: .","Tue Feb 13 18:51:35 MST 2001","Tue Feb 13 18:54:13 MST 2001","1","","23","PG1244" "PG1100","1320787","1321122","336","GTGCAAGTAGCTCCGCAAGGGGGGATTTACAACTACTTTCACTCCTTACTGCCACCCTTTTCACTCGCTCCTTTTTTGCCAAGAACTCCTCTTCCCTCCATCTCCTTATTTTGCAAAGGTCTCTTCTATATAAATCGAAAGCCGAAAAGGCCACTTCGAGAGGCTATAAAACAGAGGCACCCACATGATTCGGCTCGAATCATGTGGGTGCCTTATTCTTTTGAAGGGACTGTAAGAGACCTTATTGCTGCTTATGGATCATGGGGATTATACTATTCGTCCGTATGCCAACATGGCATACATATAATATCGGCCGGCTTAATCGGCCGAAAAGAT","10.70","9.08","12681","VQVAPQGGIYNYFHSLLPPFSLAPFLPRTPLPSISLFCKGLFYINRKPKRPLREAIKQRHPHDSARIMWVPYSFEGTVRDLIAAYGSWGLYYSSVCQHGIHIISAGLIGRKD","1320787 1321122","NO TIGR ID corresponds to this gene.","hypothetical protein","Periplasm, Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Wed Jun 20 17:52:24 MDT 2001","Tue Feb 20 09:19:51 MST 2001","","Tue Feb 20 09:17:58 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs in P. gingivalis.","Wed Jun 20 17:52:24 MDT 2001","Tue Feb 20 09:17:58 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jun 4 12:13:06 MDT 2001","","","","","","","1","","23","" "PG1101","1321942","1324569","2628","ATGCTCACGTCAAAAGAAATCAGAGAGTCGTTCAAGACTTTTTTTGCCTCAAAAGGTCATAAAATCGTTCCCTCTGCCCCCATGGTGATCAAAGGCGACCCCACGCTCATGTTCACCAATGCCGGCATGAATCAGTTCAAGGATATCATACTCGGAAATACCGAGGCTAAATACACTCGTGTAGCAGACTCGCAGAAGTGTTTGCGTGTAAGCGGCAAGCACAACGACCTCGAAGAGGTAGGCCATGACACCTATCATCATACCATGTTCGAGATGCTCGGCAACTGGTCGTTCGGCGATTACTTCAAGAAAGAAGCCATCGAATGGGCTTGGGAATACTTGGTGACGGTGTTGGGTCTGGATCCCCAGCGTCTCTATGCTACCGTATTCGAAGGCAACCCCGAAGAAGGCCTTGACCGCGACAACGAAGCGGCATCTTACTGGGCACAGTTTCTGCCTGAAGAACGAATCATCAACGGCAATAAGCATGACAACTTCTGGGAAATGGGCGATACCGGTCCCTGCGGTCCCTGCTCGGAAATACATATCGACCTGCGTTCGGACGAAGAGCGCGCCCAAATAAACGGTTTGGAGCTGATCAATAAGAGCCATCCGCAGGTCATTGAGATATGGAACCTCGTCTTCATGCAATACAATCGGAAAGCCGATGCTTCCCTGACGCCTCTGCCACACAAGGTGATCGATACGGGCATGGGATTCGAGCGTCTGTGTATGGCCTTGCAGGGCAAGACTTCCAATTACGATACGGATGTCTTTCAGCCTCTTATCCGTACTTTGGCTACGATGACGGGAATCGGATACGGTGAGGATTCTACCTCGGATATAGCCATGCGCGTAGTAGCCGACCACATCCGGACTATCGCCTTTGCCATCACGGACGGCCAATTGCCCTCCAATGCCAAAGCCGGCTATGTCATTCGCCGTATCCTGCGCCGTGCGGTTCGCTACGGCTACACCTTCCTACACTGCCGCGAAGCGTTCATGTACCGATTGCTGCCGACACTGATCGATACGATGGGCGATGCTTATCCCGAATTGCAAGCACAGCGCGAACTGATCAGCCGCGTGATCAAAGAAGAGGAAGAGAGTTTCCTGCGTACACTGGAAACGGGTATCCGCCTGCTGGAGAAAAAAATAGCCGACAATAAGGCTACCGGCTCCACCGTATTGGACGGTGTCGCTGCCTTCGAATTATACGATACGTTCGGATTTCCCCTCGACCTCACAGCCCTGATCCTATCGGAAAATGGGATGACGGTGGACGAATCAGGCTTCGACACGGAGATGCAGAAGCAAAAAGAGCGTGCCCGTAATGCCGCTGCCGTAGAAGCCGGCGACTGGGTAGTGCTACGTGAGGGTGAATCCAAATTCTCAGGATACGACTTCACCGAAACGGAAACAGAGATCCTGCGCTACCGTCAGGTGAAACAGAAAAACAAGGAATACTTTCAGGTGGTACTCTCGGACACTCCTTTCTATGCAGAGATGGGTGGGCAGGTAGGCGACAGCGGTCAGCTGATCGACGAATCGGGTGTAGCCTATGATATATTCGACACCAAACGCGAAAACAACCTCTCGGTACACCTGATGAAGAAATTGCCCGAAAGCACGACGGATACTTTCGTGGCACGGATCAATCAGGACAAACGCCGCCAGGCAGAGGCCAACCATACGGCTACGCACTTGCTGCACGAAGCTCTGCGCGAAGTCCTCGGAACGCATGTGGAGCAGAAGGGTTCGTTTGTCAGCCCGGAGGTGCTTCGTTTCGACTTCTCCCACTTCGGCAAGATGTCTCCGGAGGAGATCCGCAAGGTGGAAGAATTGGTATCCGAGCGGATACGTGCCGACTTCCAACGGGAAGAGTTTCGCGATGTGCCGATTGCCGAAGCACAGGCTATGGGAGCCATGGCCCTCTTCGGAGAGAAGTATGGCGAAGAAGTGCGCGTACTCAAGTACGGCTCTTCGGTAGAGTTGTGCGGAGGTACACATATTCCCTCTACAGGCATGATCGGGGCATTCCGTATCGTTACCGAAAGTTCGATAGCATCGGGGGTTCGTCGAATCGAAGCCGTAACGGGCATCGGTGCCGAACGTTTCATATACGAGAAAGAAGATATTCTGCTGGCTGTAAAGGAGCTGTTCAACAACAATCCGAACCTGATCAAGTCCATCAAGAAAATGCTCGAAGAGGATGCAAGTCTGAAAAAACAGATAGCGGACATGAAGCACGAGCGCATGCTGAAGTTCAAAAAGTCGCTTCTCGAGCAGGATGTTCGTCGCCGTGGTATCCGTCTTTTCCTCTTTCAGGAGATCATGGAGGCAGAGACGGCCAAGGATATAGCTTTCCAAATTGCCGGCGAACTGCAAGAGAGCTTCGTCCTCATAGCGGGAACGACCGAAGGTGGTGAAAAATGCGCGCTGACAGTGATGCTTTCGAAAGATCTCACGGAGGGAGGGATGGATGCAGCCAAACTGGTACGAAGTGCCGCCAAGCATATACAGGGCGGTGGTGGTGGACAGCCACACTTCGCTACGGCGGGTGGCAAGAATCCTAAAGGACTGCCTGCTGCCATTCAGCAGATACTGACCGAAGCAGAGCTAACGGAC","5.30","-24.14","98431","MLTSKEIRESFKTFFASKGHKIVPSAPMVIKGDPTLMFTNAGMNQFKDIILGNTEAKYTRVADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIEWAWEYLVTVLGLDPQRLYATVFEGNPEEGLDRDNEAASYWAQFLPEERIINGNKHDNFWEMGDTGPCGPCSEIHIDLRSDEERAQINGLELINKSHPQVIEIWNLVFMQYNRKADASLTPLPHKVIDTGMGFERLCMALQGKTSNYDTDVFQPLIRTLATMTGIGYGEDSTSDIAMRVVADHIRTIAFAITDGQLPSNAKAGYVIRRILRRAVRYGYTFLHCREAFMYRLLPTLIDTMGDAYPELQAQRELISRVIKEEEESFLRTLETGIRLLEKKIADNKATGSTVLDGVAAFELYDTFGFPLDLTALILSENGMTVDESGFDTEMQKQKERARNAAAVEAGDWVVLREGESKFSGYDFTETETEILRYRQVKQKNKEYFQVVLSDTPFYAEMGGQVGDSGQLIDESGVAYDIFDTKRENNLSVHLMKKLPESTTDTFVARINQDKRRQAEANHTATHLLHEALREVLGTHVEQKGSFVSPEVLRFDFSHFGKMSPEEIRKVEELVSERIRADFQREEFRDVPIAEAQAMGAMALFGEKYGEEVRVLKYGSSVELCGGTHIPSTGMIGAFRIVTESSIASGVRRIEAVTGIGAERFIYEKEDILLAVKELFNNNPNLIKSIKKMLEEDASLKKQIADMKHERMLKFKKSLLEQDVRRRGIRLFLFQEIMEAETAKDIAFQIAGELQESFVLIAGTTEGGEKCALTVMLSKDLTEGGMDAAKLVRSAAKHIQGGGGGQPHFATAGGKNPKGLPAAIQQILTEAELTD","1321930 1324569","TIGR ID: PG1246","alanyl-tRNA synthetase (alanine-tRNA ligase) (ALARS)","Cytoplasm","Numerous significant hits to alanyl-tRNA synthetase (alanine--tRNA ligase) in gapped BLAST; e.g. residues 3-867 are 43% similar to gb|AAG57801.1|AE005498_2 alanyl-tRNA synthetase of Escherichia coli O157:H7, residues 2-866 are 42% similar to sp|O67323|SYA_AQUAE alanyl-tRNA synthetase (alanine--tRNA ligase) of Aquifex aeolicus, residues 1-866 are 41% similar to gb|AAC22473.1| alanyl-tRNA synthetase of Haemophilus influenzae Rd.This sequence is similar to BT3995.","
InterPro
IPR002318
Family
Alanyl-tRNA synthetase, class IIc
PR00980\"[75-86]T\"[208-219]T\"[235-248]T\"[285-301]T\"[309-322]TTRNASYNTHALA
PF01411\"[6-556]TtRNA-synt_2c
TIGR00344\"[6-855]TalaS
PS50860\"[2-709]TAA_TRNA_LIGASE_II_ALA
InterPro
IPR003156
Domain
Phosphoesterase, DHHA1
PF02272\"[796-870]TDHHA1
InterPro
IPR012947
Domain
Threonyl/alanyl tRNA synthetase, SAD
PF07973\"[654-696]TtRNA_SAD
noIPR
unintegrated
unintegrated
PTHR11777\"[35-876]TPTHR11777
SSF101353\"[255-470]TSSF101353
SSF55186\"[552-723]TSSF55186
SSF55681\"[1-254]TSSF55681


","BeTs to 17 clades of COG0013COG name: Alanyl-tRNA synthetaseFunctional Class: JThe phylogenetic pattern of COG0013 is amtKYqVcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** PR00980 (Alanyl-tRNA synthetase signature) with a combined E-value of 9e-43. PR00980A 75-86 PR00980B 208-219 PR00980C 235-248 PR00980D 285-301 PR00980E 309-322","Residues 563-697 are 58% similar to a (SYNTHETASE AMINOACYL-TRNA PROTEIN LIGASE BIOSYNTHESIS) protein domain (PD001534) which is seen in SYA_THIFE.Residues 4-262 are 57% similar to a (SYNTHETASE AMINOACYL-TRNA ALANYL-TRNA) protein domain (PD002561) which is seen in SYA_ARATH.Residues 269-439 are 47% similar to a (SYNTHETASE AMINOACYL-TRNA ALANYL-TRNA) protein domain (PD002924) which is seen in SYA_BACSU.","","Thu Jun 14 11:22:38 MDT 2001","","Thu Jun 14 11:22:38 MDT 2001","Thu Jun 14 11:22:38 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:22:38 MDT 2001","Thu Jun 14 11:22:38 MDT 2001","","","Thu Apr 19 17:04:08 MDT 2001","Sat Jan 3 10:45:10 2004","Tue Feb 20 09:43:09 MST 2001","Fri Jun 22 15:59:26 MDT 2001","Fri Jun 22 15:59:26 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 20 09:43:09 MST 2001","-65% similar to PDB:1RIQ The crystal structure of the catalytic fragment of the alanyl-tRNA synthetase (E_value = 2.1E_120);-65% similar to PDB:1YFR crystal structure of alanyl-tRNA synthetase in complex with ATP and magnesium (E_value = 2.1E_120);-65% similar to PDB:1YFS The crystal structure of alanyl-tRNA synthetase in complex with L-alanine (E_value = 2.1E_120);-65% similar to PDB:1YFT The crystal structure of the catalytic fragment of alanyl-tRNA synthetase in complex wtih glycine (E_value = 2.1E_120);-65% similar to PDB:1YGB Crystal Structure of the catalytic fragment of alanyl-tRNA synthetase in complex with L-serine (E_value = 2.1E_120);","","","Residues 796 to 870 (E-value = 5.6e-09) place PG1101 in the DHHA1 family which is described as DHHA1 domain (PF02272)","Fri Jun 22 15:59:26 MDT 2001","34540951","","","Putney,S.D., Melendez,D.L. and Schimmel,P.R. 1981. Cloning, partial sequencing, and in vitro transcription of the gene for alanine tRNA synthetase. J. Biol. Chem. 256 (1): 205-211. PubMed: 6256345.","","Tue Feb 20 09:48:28 MST 2001","1","","23","PG1246" "PG1102","1324587","1325645","1059","GTGGTCATCGTCGGAACAGATATTATCGGTCGTAAGCTGGTACCTGCACTGTCGGGTATGGCTTGCGACCGATTGTTTGTyTTGTGCGACGAGGCAGTGGCAACGCTGCATGCCGAGCGAATTGCTGCAATCAGAGCACTAACGGCCGCGGATGAyTGGTATTTGCTCTCCGGAGGGGAAACGATCAAACAGTGGGGAAACTGCCTGCCCCTATGGCGATGGCTGAGCGAAAGAGGTGCTTCGCGCCACTCTCTATTAyTGAATATAGGAGGCGGTACGATTACGGACTTGGGCGGCTTCGTCGCTTCGGTCTATAAGCGAGGTATCCGGACGGTAAATCTCAGCACAACCCTAATGGGAATGGTAGATGCTTCGGTCGGAGGGAAAACAGGCATAGACTTCGAAGGCGTCAAAAACGAGATAGGCACTTTCCATCTGCCGAAAGCGGTCTTCTGTGACTGTGCTTTCCTGTCCACCCTAACCGACCGTGAACTGCTGTCGGGACATGCCGAATTGGTAAAGCACGCTCTTCTCATGGGAGCGGATGAATGGAAAGAAGTTATTTCTTTCGATCCGTTCGGTAATAATATGGAGGCATGGGAAGAGATCGTCCGGCATAGCGTAACTTTCAAGGAGTCGATAGTAAATCGGGACTTGCACGAATCCGGACTTAGAAGCATGCTCAATCTGGGTCATACCGTCGGGCATGCGATGGAAAGCTTTTCATACACTTTGCCTGGAAATGTAGGCCTTTCGCATGGCCATGCAGTCATAATCGGCCTTATCTGCGAACTCTATTATTCGGTGGTGGCACATGGTTTCCCTCGAGAGATCCTCTACTCGCTGGTCGCATGGTCCAAAGAATACTACTCACCCTTCTTTTTCACCTGCAAGCAATATCCGTCTCTGACGGCTTTTTGCATGAAAGACAAGAAGAATCTGGGGAGCAAAATCAGGCTTATTCCACTTAAAGGGATAGGCTTACCGGCAGAACCATGTGAGATAACGGAGAAAATGTTGCACGAATGTTTCGATTTTTATCGCGAAACTCTTGGAGGG","6.70","-2.33","87069","VVIVGTDIIGRKLVPALSGMACDRLFVLCDEAVATLHAERIAAIRALTAADDWYLLSGGETIKQWGNCLPLWRWLSERGASRHSLLXNIGGGTITDLGGFVASVYKRGIRTVNLSTTLMGMVDASVGGKTGIDFEGVKNEIGTFHLPKAVFCDCAFLSTLTDRELLSGHAELVKHALLMGADEWKEVISFDPFGNNMEAWEEIVRHSVTFKESIVNRDLHESGLRSMLNLGHTVGHAMESFSYTLPGNVGLSHGHAVIIGLICELYYSVVAHGFPREILYSLVAWSKEYYSPFFFTCKQYPSLTAFCMKDKKNLGSKIRLIPLKGIGLPAEPCEITEKMLHECFDFYRETLGG","1324587 1325645","TIGR ID: PG1247","3-dehydroquinate synthase","Cytoplasm","Numerous significant hits to 3-dehydroquinate synthase in gapped BLAST; e.g residues 27-342 are 34% similar to gb|AAF84143.1|AE003966_4 3-dehydroquinate synthase of Xylella fastidiosa, residues 2-266 are 36% similar to emb|CAC11430.1| 3-dehyroquinate synthase related protein of Thermoplasma acidophilum, residues 55-262 are 45% similar to pir||C75161 3-dehydroquinate synthase of Pyrococcus abyssi (strain Orsay).","
InterPro
IPR002658
Domain
3-dehydroquinate synthase AroB
PF01761\"[9-314]TDHQ_synthase
TIGR01357\"[1-345]TaroB: 3-dehydroquinate synthase
noIPR
unintegrated
unintegrated
G3DSA:1.20.1090.10\"[160-348]Tno description
G3DSA:3.40.50.1970\"[17-159]Tno description
PTHR21090\"[54-353]TAROM/DEHYDROQUINATE SYNTHASE
PTHR21090:SF1\"[54-353]T3-DEHYDROQUINATE SYNTHASE


","No hit to the COGs database.","***** PF01761 (3-dehydroquinate synthase) with a combined E-value of 4.8e-37. PF01761A 112-164 PF01761B 211-239 PF01761C 252-292","Residues 59-327 are 35% similar to a (SYNTHASE 3-DEHYDROQUINATE LYASE AROMATIC AMINO ACID) protein domain (PD002227) which is seen in AROB_CORPS.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","Tue Feb 6 13:36:08 MST 2001","Tue Feb 6 13:36:08 MST 2001","","","Wed Mar 22 10:44:35 MST 2000","Fri Feb 9 12:08:42 MST 2001","Tue Feb 6 13:36:08 MST 2001","Fri Apr 13 16:53:34 MDT 2001","Fri Apr 13 16:53:34 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Apr 13 16:53:34 MDT 2001","-48% similar to PDB:1UJN Crystal structure of dehydroquinate synthase from Thermus thermophilus HB8 (E_value = 5.5E_39);-49% similar to PDB:1XAG CRYSTAL STRUCTURE OF STAPHLYOCOCCUS AUREUS 3-DEHYDROQUINATE SYNTHASE (DHQS) IN COMPLEX WITH ZN2+, NAD+ AND CARBAPHOSPHONATE (E_value = 2.2E_32);-49% similar to PDB:1XAH CRYSTAL STRUCTURE OF STAPHLYOCOCCUS AUREUS 3-DEHYDROQUINATE SYNTHASE (DHQS) IN COMPLEX WITH ZN2+ AND NAD+ (E_value = 2.2E_32);-49% similar to PDB:1XAI CRYSTAL STRUCTURE OF STAPHLYOCOCCUS AUREUS 3-DEHYDROQUINATE SYNTHASE (DHQS) IN COMPLEX WITH ZN2+, NAD+ AND CARBAPHOSPHONATE (E_value = 2.2E_32);-49% similar to PDB:1XAJ CRYSTAL STRUCTURE OF STAPHLYOCOCCUS AUREUS 3-DEHYDROQUINATE SYNTHASE (DHQS) IN COMPLEX WITH ZN2+, NAD+ AND CARBAPHOSPHONATE (E_value = 2.2E_32);","","","Residues 3 to 345 (E-value = 1.1e-53) place PG1102 in the DHQ_synthase family which is described as 3-dehydroquinate synthase (PF01761)","Fri Apr 13 16:53:34 MDT 2001","34540952","","","","","","1","","23","PG1247" "PG1103","1326625","1325897","729","ATGGATCATAGCCAACTGACCGCCCAAGCAGTAACTGCGCATTTTGAAAGTATCGGTAATCCTGAGCGTGCCGGACAGATGCAGCGGTTTTTTAAGACTGCTCCGGGCGAATATGCTGAGGGAGACCTTTTCCTCGGAATATCCGTTCCCGACATTCGCGCTTATGAGAAGACACATAGGCCTTGGAGGGTGGAAATCCTCGCTCTTTTGCTGCAACAGCCTTATCACGAGGTGCGGCATCTCGCACTTATCGGCATGACCGAACTATACAGACGTGCTCGGTCGGAAGCAGTACGGGAGGGGCTATTAGCCTCCTATCTGAGCCATACGACTATGATCAATAACTGGGATTTGGTTGATGTATCCGCACCCGGAATAGTAGGCGAATATGTCCATGCTCATCCCATCGAGGGCAATGCCTTGCTGGATAGATTGGCCGATTCATGCTTGTTGTGGGAACAACGAATAGCGATGGTAGCCAATTGGCGACTGATCCGATACGGAGAGTACGAAGCTACCATTCGCATTGCCGAGCGATTGCTCCACCACCCACACGATCTCATTCATAAAGCAGTAGGCTGGATGCTGCGTGAGATGGGTAAAAAGCAAGAACGGCTCCTGCTTGCTTTCCTTGACAAACATGCCGCCACTATGCCACGGACAGCTCTCCGCTATGCCATGGAAAAGCTCCCGTCCGATCTGCGCTCTTACTACCTGACCAAAGGGAAA","8.50","4.09","27949","MDHSQLTAQAVTAHFESIGNPERAGQMQRFFKTAPGEYAEGDLFLGISVPDIRAYEKTHRPWRVEILALLLQQPYHEVRHLALIGMTELYRRARSEAVREGLLASYLSHTTMINNWDLVDVSAPGIVGEYVHAHPIEGNALLDRLADSCLLWEQRIAMVANWRLIRYGEYEATIRIAERLLHHPHDLIHKAVGWMLREMGKKQERLLLAFLDKHAATMPRTALRYAMEKLPSDLRSYYLTKGK","1326625 1325897","TIGR ID: PG1248","hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR014825
Family
DNA alkylation repair enzyme
PF08713\"[19-230]TDNA_alkylation
noIPR
unintegrated
unintegrated
SSF48371\"[6-225]TSSF48371


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","","Tue Feb 20 09:58:56 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 20 09:58:56 MST 2001","-37% similar to PDB:2B6C Predicted DNA alkylation repair enzyme from Enterococcus faecalis. (E_value = );-52% similar to PDB:1K3V Porcine Parvovirus Capsid (E_value = );","","","No significant hits to the Pfam 11.0 database","Tue Feb 20 09:58:56 MST 2001","34540953","","","","","","1","","23","PG1248" "PG1104","1327254","1326643","612","ATGTTGTGGTCGCGATGTACGCTATTCCTCTTTTTGTGCCCCATTCGAGTCAGAGGGCGAGAGCATATCCCGGGTAAAGGGCCTTTCGTCGTTATGGCCAATCACCAAGGCGCTTGCGATATTTTCATGATGTACGGCTATCTCGGTATTCCTTTCAAATGGGTATTGAAAGAAGGTATTCGCAAATTACCTTTCGTAGGCTATGCATGCCGGTCGGCCGGATTCGTATTTGTCGATGATACTCGCCCTTCCTCTATTGCTCACACTATGGATCAGGCCAAGCGTGTTTTGGCGGAAGGCACTTCCATTTTTATTTTCCCGGAGGGTAGTCGTACTCGCAACGGCCGGCTGGCTCGCTTTAAAAAGGGCGGCTTCCTGATGGCGGACGAATTGGGTGTACCCATTATTCCCGTTTCGTTGGATGGCTCGTATCGCGTGCTTCCCTCAGGGAAACTCATCCCACGCCCTCATCGCTTGACGCTGACGATCCATCCACCTCTGTCCGTTGCAGATTTTGGAGAGAGACCGTTATGTATATCCGAGGCGGTGCGGGAAACAAGCCGACGAATTGCTTCGGTGCTACCGGAAGAAATGGCTGCAACCCAATCGAAG","10.60","11.96","22719","MLWSRCTLFLFLCPIRVRGREHIPGKGPFVVMANHQGACDIFMMYGYLGIPFKWVLKEGIRKLPFVGYACRSAGFVFVDDTRPSSIAHTMDQAKRVLAEGTSIFIFPEGSRTRNGRLARFKKGGFLMADELGVPIIPVSLDGSYRVLPSGKLIPRPHRLTLTIHPPLSVADFGERPLCISEAVRETSRRIASVLPEEMAATQSK","1327425 1326643 [Shorter 1419 146 99]","TIGR ID: PG1249","1-acyl-sn-glycerol-3-phosphate acyltransferase","Inner membrane, Cytoplasm","This sequence corresponds to gi:34397269 in Genbank from Porphyromonas gingivalis W83.Its nearest neighbor in the NR database is gi:29337545 from Bacteroides thetaiotaomicron VPI-5482.","
InterPro
IPR002123
Domain
Phospholipid/glycerol acyltransferase
PF01553\"[14-141]TAcyltransferase
SM00563\"[29-143]TPlsC
noIPR
unintegrated
unintegrated
PTHR10434\"[15-175]TPTHR10434
SSF69593\"[3-199]TSSF69593


","BeTs to 13 clades of COG0204COG name: 1-acyl-sn-glycerol-3-phosphate acyltransferaseFunctional Class: IThe phylogenetic pattern of COG0204 is ----YQvCEbRhujgpolINXNumber of proteins in this genome belonging to this COG is 2","***** PF01553 (Acyltransferase) with a combined E-value of 1.5e-11. PF01553A 28-40 PF01553B 105-131","Residues 9-168 are 32% similar to a (ACYLTRANSFERASE TRANSFERASE PROTEIN PHOSPHOLIPID) protein domain (PD000989) which is seen in PLCA_MOUSE.","","Thu Jun 14 11:22:59 MDT 2001","","Thu Jun 14 11:22:59 MDT 2001","Thu Jun 14 11:22:59 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:22:59 MDT 2001","Thu Jun 14 11:22:59 MDT 2001","","","Wed Mar 22 15:02:43 MST 2000","Fri Mar 25 08:53:07 2005","Tue Feb 20 10:09:41 MST 2001","Fri Jun 22 16:04:15 MDT 2001","Fri Jun 22 16:04:15 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 20 10:09:41 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 14 to 141 (E-value = 2.2e-34) place PG1104 in the Acyltransferase family which is described as Acyltransferase (PF01553)","Fri Jun 22 16:04:15 MDT 2001","34540954","","","Coleman J.Characterization of the Escherichia coli gene for 1-acyl-sn-glycerol-3-phosphate acyltransferase (plsC).Mol Gen Genet. 1992 Mar;232(2):295-303.PMID: 1557036Coleman J.Characterization of Escherichia coli cells deficient in 1-acyl-sn-glycerol-3- phosphate acyltransferase activity.J Biol Chem. 1990 Oct;265(28):17215-21.PMID: 2211622","","Fri Mar 25 08:53:07 2005","1","","23","PG1249" "PG1105","1327939","1327280","660","ATGAAGCCGCAAAACCAATTTAAGCGTCGGCCCCACACAAGCATTGATTTGACGAAGAAAGGAGTACTCTATGCAGTCTCTGCGAACCTCAACTTTTATAATTCCGGCAACTCAACGGTACCCAACACTTTAAGCTGTAATAAACGAAAAGAGAACCATCGGTTCATTCCTCCTCTATGGCAGGAGATGAACCGATGGTTCTCTTTTTCCCGATTCCCCGATTGGGGGGCTATATTTCAGCCTTATGCCTTTGCTCTACGGCCAAGAATAATGTGGGCGAAGAAGCCTACGACGACCAAAAAAAGACCGATCATCAAGCTTTTGTCGCTGATCGAATTCGTGAATGCGGGGATGGCCAGTACCAAAACGCCAACGAGCAATATGATGGCTCCCAAGTATTTTCCGATTCCTTCCATTGTGAGTATGTTCGTTTTATTTGTTTTCGTTTTTATCTCTGCAAATAAAACAATAATCTGCCGAATACAGAAATTATTGCACGAAAGATTCATTACTTTTGTCCGTAATCAATACGAAAAAGATGAATACTATCGGACGCTTTCTTTTTCTCATCTATTTCTGCCTGATCGGCGCCCCTCTTTTCCTCCTGCTCACTATATTGACAGCACTGACTACCACTGTAGGCTGCATGCTGGGAGGCAG","11.10","22.52","25935","MKPQNQFKRRPHTSIDLTKKGVLYAVSANLNFYNSGNSTVPNTLSCNKRKENHRFIPPLWQEMNRWFSFSRFPDWGAIFQPYAFALRPRIMWAKKPTTTKKRPIIKLLSLIEFVNAGMASTKTPTSNMMAPKYFPIPSIVSMFVLFVFVFISANKTIICRIQKLLHERFITFVRNQYEKDEYYRTLSFSHLFLPDRRPSFPPAHYIDSTDYHCRLHAGRQ","1328116 1327280 [Bad Olap 1418 146 0]","TIGR ID: PG1250","hypothetical protein","Inner membrane, Periplasm","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
tmhmm\"[104-119]?\"[133-153]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 11:23:27 MDT 2001","","Thu Jun 14 11:23:27 MDT 2001","Thu Jun 14 11:23:27 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:23:27 MDT 2001","Thu Jun 14 11:23:27 MDT 2001","","","Thu Feb 15 11:21:20 MST 2001","","Thu Feb 15 11:21:20 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs in P. gingivalis.","Fri Jun 22 16:06:03 MDT 2001","Thu Feb 15 11:21:20 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Fri Jun 22 16:06:03 MDT 2001","34540955","","","","","","1","","23","PG1250" "PG1105.2","1327922","1328272","351","TTGGTTTTGCGGCTTCATTCGAGCGAGTTTCTCCTCATTGGTATTGTTGGCTGCTACTGTGTACCGACGGTAGCCGAATGGATTATTGGAGCCGGAGGCGGTATCGGCTCGTATGGATGCAATGTGAATCAGACGGCACAGCGTGGCACACAATGTGCATACACGGGGAGCAAGGCGATGATTGGAGGAGCACAAGTGCTGTTGCCGGTCATGTCGTTGGATGTCTCAAAGGGGCACTCATTAAAGGGGAGTAAATTTCCACCTGTGGAAATTCGGCGTGTACCAAATAGTCGCCTGACACACAATAAGAAGAATGAACAAAAGTGCCTGCTTATTGTGCAAAGGCCCCAT","10.20","8.70","12554","LVLRLHSSEFLLIGIVGCYCVPTVAEWIIGAGGGIGSYGCNVNQTAQRGTQCAYTGSKAMIGGAQVLLPVMSLDVSKGHSLKGSKFPPVEIRRVPNSRLTHNKKNEQKCLLIVQRPH","","TIGR ID: PG1251","hypothetical protein","Cytoplasm, Outer membrane","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR012424
Family
Homologues of TraJ from Bacteroides conjugative transposon
PF07863\"[10-84]TCtnDOT_TraJ
noIPR
unintegrated
unintegrated
signalp\"[1-18]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 11:23:56 MDT 2001","","Thu Jun 14 11:23:56 MDT 2001","Thu Jun 14 11:23:56 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:23:56 MDT 2001","Thu Jun 14 11:23:56 MDT 2001","","","Tue Feb 20 10:46:27 MST 2001","","Tue Feb 20 10:26:55 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1-117 of PG1105.2 are 85% similar to PG0455, a hypothetical protein. Similarities are also seen to PG1941.1, PG1563, PG0787.1, PG1198, PG0941.1, and PG1293, all hypothetical proteins. ","Fri Jun 22 16:07:36 MDT 2001","Thu May 31 15:05:00 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Fri Jun 22 16:07:36 MDT 2001","34540956","","","","","","1","","23","PG1251" "PG1106","1329677","1328445","1233","ATGAAGATCGATTTCTTTTTGGCCGGACGGCTCTTTAGGGGCGGAGGGAAAGAGGGGAAAGGAATAGCCCCTATTGTTCGTCTCTCTGTGATCGGTATCATGCTCAGCTTGATGGTCATGCTCATTACCGTGTCGATAGCTGGTGGCTTCAAACAAAATATCCGCAGTCTGGTATACGGCTATACGGGACATCTATGCATTGCCCCCGTGGCCGGAACTTCAGATCATTTCAATGCTCCGGTCGGGATGCTTGAAGCTATAACCTCTGTCGAAGGTGTGGACCGGGTAGTGCCCACGATCGAAATGACAGGTGTTGCCAAGACAGACAGTGCTTTTGCCGGTATTCTACTGATGGGGGACAATTCACTCCGAACTCGCAATCCGCTCTTCGGTCAAACCGTTTCGGGAAATTATCCGAGCTTTAGTTCTGCCGATACGGTACCCAATCCTATTCTTCTGCCACAAGTTACTGCCGACAAACTTCATCTCAAGATCGGCGATAAGCTCCGCATCTATTTCGCCGGTACGGAACGAATGCGTTTGCGCGCGTTCACAGTTGCAGGAGTTTATAGCGGAGGCAAAATGGATATGCCTGTTGGCTTGGTCTCTGCTGATGTACTCCGCCGAGTGGGTGGGTTGGGTGCTGATGACGTTAGCCGTTTACTCATTTATGCCTCTGATCCGGACGAAACAGATCTCATTGTGACGCGAGTGTTCGATCGCCTTTCGGAAACACTCTACGTCGGGGAACAACGACTGACCATCAATACGGCTACAGAACTGAATCCGATGATTATGGATTGGCTCTCTGCCTTGGACACCAATGTTGCTATCCTGCTGACACTGATGGGATTGGTCGGAGGCTTCACGATGATAGCCGGTCTGATTGTTTTGGTCATGGACAAAACGCAGTTTATCGGCATGCTCAAAGCTTTAGGCTGTGCTGAAGGGTCGCTTCGCCGCATATTCCTCTATCTGGCTATGATGCTCGTTGGTCGTGGTATGATCTGGGGCAATGTTTTGGCTCTTATACTCTGCCTCCTGCAGCAACATTTCCGCTGGTTGCGTCTCCTCGATCCTGATATTTACTACATGGACTATGTGCCTGTTCAAGTGGACTGGCTCGTATGGATTCTCGTTAATTTGGGTACCCTCCTCGTTACCTTCTTGATGCTCCTTGCTCCATCGCATATTATTTCGAGAATTTCCCCCGTCAAAGCCCTTCGCTTCGAG","8.40","3.07","44954","MKIDFFLAGRLFRGGGKEGKGIAPIVRLSVIGIMLSLMVMLITVSIAGGFKQNIRSLVYGYTGHLCIAPVAGTSDHFNAPVGMLEAITSVEGVDRVVPTIEMTGVAKTDSAFAGILLMGDNSLRTRNPLFGQTVSGNYPSFSSADTVPNPILLPQVTADKLHLKIGDKLRIYFAGTERMRLRAFTVAGVYSGGKMDMPVGLVSADVLRRVGGLGADDVSRLLIYASDPDETDLIVTRVFDRLSETLYVGEQRLTINTATELNPMIMDWLSALDTNVAILLTLMGLVGGFTMIAGLIVLVMDKTQFIGMLKALGCAEGSLRRIFLYLAMMLVGRGMIWGNVLALILCLLQQHFRWLRLLDPDIYYMDYVPVQVDWLVWILVNLGTLLVTFLMLLAPSHIISRISPVKALRFE","1329677 1328445","TIGR ID: PG1252","conserved hypothetical protein","Inner membrane, Cytoplasm","Several significant and numerous weak hits in gapped BLAST; e.g. residues 17-411 are 22% similar to pir||E71676 hypothetical protein of Rickettsia prowazekii, residues 17-408 are 22% similar to gb|AAF95030.1| conserved hypothetical protein of Vibrio cholerae, residues 29-411 are 22% similar to gb|AAG06374.1|AE004724_3 conserved hypothetical protein of Pseudomonas aeruginosa. ","
InterPro
IPR003838
Domain
Protein of unknown function DUF214, permase predicted
PF02687\"[218-404]TFtsX


","BeTs to 12 clades of COG0577COG name: Predicted permeaseFunctional Class: RThe phylogenetic pattern of COG0577 is AMt--QVcEBRHuj--OLinxNumber of proteins in this genome belonging to this COG is 8","***** BP03665 (PROTEIN TRANSMEMBRANE CONSERVED MEMBRA) with a combined E-value of 1e-13. BP03665A 152-168 BP03665B 282-336 BP03665C 384-411","Residues 216-411 are 25% similar to a (PROTEIN TRANSMEMBRANE MEMBRANE CONSERVED INTEGRAL CELL) protein domain (PD003665) which is seen in Q9ZCM5_RICPR.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Feb 20 10:57:55 MST 2001","Tue Feb 20 10:57:55 MST 2001","Tue Feb 20 10:57:55 MST 2001","Tue Feb 20 10:57:55 MST 2001","Tue Feb 20 10:57:55 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 20 10:57:55 MST 2001","-43% similar to PDB:1GT2 R207S,R292S MUTANT OF MALATE DEHYDROGENASE FROM THE HALOPHILIC ARCHAEON HALOARCULA MARISMORTUI (HOLO FORM) (E_value = );-43% similar to PDB:1O6Z 1.95 A RESOLUTION STRUCTURE OF (R207S,R292S) MUTANT OF MALATE DEHYDROGENASE FROM THE HALOPHILIC ARCHAEON HALOARCULA MARISMORTUI (HOLO FORM) (E_value = );","","","Residues 218 to 404 (E-value = 2.8e-19) place PG1106 in the FtsX family which is described as Predicted permease (PF02687)","Tue Feb 20 10:57:55 MST 2001","34540957","","","","","","1","","23","PG1252" "PG1107","1331699","1329693","2007","ATGGAAAAGATAGTTCCCCCTGCTGTCCGAATAGAAGAGCTGCGCCGCATTCTGCGTGAGCACGAATACAGGTATTACGTTCTCTCATCTCCGACTATCGATGACTTCGAGTATGACGCCATGATGAAGCAGCTTGAGGAGCTGGAACGGGAATACCCCGAATGGGATAGTCCTGACTCGCCTACGCATCGTGTCGGAAGCGACAAAACGGAAGGATTCGCTTCCGTTCGCCACGACAGACCGATGCTTTCCCTCAGCAATACATATAATTACGATGAGATTGGAGATTTTTATCGTCGCGTGTCCGAAGGACTTCAAGGCGCACCTTTCGAAATCGTTGCAGAGCTGAAATTCGACGGACTTTCCATTTCGCTTATCTACGAAGATGGTATGCTGGTGCGTGCCGTTACCAGAGGCGATGGAATAATGGGAGATGATGTAACGGCTAATGTCCGTACCATCCGATCTGTCCCTTTGCGACTAAGAGGCGATGATTATCCCCGTATGTTGGAAGTTCGAGGAGAGATATTGCTCCCTTTCAAGGAATTCGATCGGATCAATGCCCAACGGGAGGCCGAAGGGGAGCCTCTATTTGCCAATCCGCGCAATGCCGCTTCCGGTACCATTAAGCAGCTCGACCCCCATATCGTAGCCGGACGAAACTTGGATGCTTATTTCTACTATCTATATAGCGATGAACCTTTGGCAGAGAATCATTACGACCGACTGATGCAGGCGCGTCAGTGGGGTTTCAAAGTCTCTGATGCCGTCACACTATGCTGTAGTAAGGAGGAGGTATATGCCTTTATCGATCGTTTCGATACCGAGCGTCTGACATTGCCCGTAGCTACTGATGGTATTGTCCTCAAGGTAAATGCTCCGGCTCAGCAGGATTTGCTTGGCTTTACGGCCAAAAGCCCACGTTGGGCTATTGCCTATAAGTATCAGGCCGAGCGAGTACGTACTCGTCTGCAGCATGTAAGCTATCAAGTAGGGCGTACGGGGGCGGTCACACCTGTGGCCAATCTCGACCCAGTACTGATATCCGGTACGGTCGTGAGACGCGCCAGCTTGCATAATGCTGATTTTATTGCGGAGAAAGACCTTCACGAGGGAGACTTTGTCTATGTGGAAAAGGGTGGAGAGATCATTCCCAAGATAGTGGGTGTGGATACGGATGCACGCAGTATCGATGGCAGACCTATAGTTTTTACAGTGCTCTGTCCAGACTGTGCTACACCATTGGTACGCGAACAGGGAGAAGCTGCCTATTATTGCCCGAATGCCGAGGGCTGCCCACAGCAGCAGAAAGGACGGCTCGAACACTATTGCGGACGCAAGACGGCAGACATCAATATCGGCCCGGAGACGATCGAATTGCTTTATAGCCGCAATATGATTCGTAACGTTGCTGACTTTTATGCCCTTACGGAAGAGCAGCTACTCACTCTGCCCGGCTTCAAAAAACGGGCTGCTGCCAAACTTTTGGACAGTATCGAAGCCTCCAAAGCCCGTCCGTATCAGGCCATTTTGTTCGGATTAGGTATTCGCTTTGTCGGAGAAACCGTAGCCAAGAAACTTGCTGCGGTCTATCCTTCTATCGATGCCCTGGCTGCTGCGACGAGCGAGGAATTAGTACAGATAGACGAGATCGGGGAAAGAATAGCTGCTGCTGTACTTCATTTTTTCAGCCTTCGGCAGAACAGGGAGTTGATCGAACGACTTCGTTTGGCCGGTGTATCGTTGGAAGCTGAGACAGTTTCCGTGGCGGTTTCCAATCGTTTAGCCGGAAAAACGGTTGTTATCAGTGGTACATTTGAAAAGCGTAGTCGTGATGAGTACAAAGCTATGGTAGAGGACAATGGCGGACGTATGGCCGGATCGGTTTCGTCCAAGACCTCTTTCATTCTTGCCGGATCGGATATGGGGCCGAGTAAGAGAGAGAAAGCAGAGAAGCTCGGTGTGCGGCTGATGAGTGAAGAGGAATTTCTCCGTCTGATAGAAGAA","5.20","-15.82","164751","MEKIVPPAVRIEELRRILREHEYRYYVLSSPTIDDFEYDAMMKQLEELEREYPEWDSPDSPTHRVGSDKTEGFASVRHDRPMLSLSNTYNYDEIGDFYRRVSEGLQGAPFEIVAELKFDGLSISLIYEDGMLVRAVTRGDGIMGDDVTANVRTIRSVPLRLRGDDYPRMLEVRGEILLPFKEFDRINAQREAEGEPLFANPRNAASGTIKQLDPHIVAGRNLDAYFYYLYSDEPLAENHYDRLMQARQWGFKVSDAVTLCCSKEEVYAFIDRFDTERLTLPVATDGIVLKVNAPAQQDLLGFTAKSPRWAIAYKYQAERVRTRLQHVSYQVGRTGAVTPVANLDPVLISGTVVRRASLHNADFIAEKDLHEGDFVYVEKGGEIIPKIVGVDTDARSIDGRPIVFTVLCPDCATPLVREQGEAAYYCPNAEGCPQQQKGRLEHYCGRKTADINIGPETIELLYSRNMIRNVADFYALTEEQLLTLPGFKKRAAAKLLDSIEASKARPYQAILFGLGIRFVGETVAKKLAAVYPSIDALAAATSEELVQIDEIGERIAAAVLHFFSLRQNRELIERLRLAGVSLEAETVSVAVSNRLAGKTVVISGTFEKRSRDEYKAMVEDNGGRMAGSVSSKTSFILAGSDMGPSKREKAEKLGVRLMSEEEFLRLIEE","1331699 1329693","TIGR ID: PG1253","DNA ligase (NAD dependent)","Cytoplasm","Numerous significant hits to DNA ligase in gapped BLAST; e.g. residues 27-667 are 44% similar to emb|CAA09732.1| DNA ligase of Bacillus stearothermophilus, residues 27-668 are 43% similar to pir||S74436 DNA ligase (NAD+) of Synechocystis sp. (strain PCC 6803), residues 27-667 are 42% similar to gb|AAC75464.1| DNA ligase of Escherichia coli K12.This sequence is similar to BT0894.","
InterPro
IPR001357
Domain
BRCT
PF00533\"[590-667]TBRCT
SM00292\"[592-669]TBRCT
PS50172\"[590-669]TBRCT
InterPro
IPR001679
Family
NAD-dependent DNA ligase
TIGR00575\"[14-663]Tdnlj
PS01055\"[117-146]TDNA_LIGASE_N1
PS01056\"[331-346]TDNA_LIGASE_N2
InterPro
IPR003583
Domain
Helix-hairpin-helix DNA-binding, class 1
SM00278\"[479-498]T\"[543-562]THhH1
InterPro
IPR004149
Domain
Zinc-finger, NAD-dependent DNA ligase C4-type
PF03119\"[406-434]TDNA_ligase_ZBD
InterPro
IPR004150
Domain
NAD-dependent DNA ligase, OB-fold
PD003944\"[317-390]TDNAligase
PF03120\"[320-401]TDNA_ligase_OB
InterPro
IPR010994
Domain
RuvA domain 2-like
SSF47781\"[403-585]TRuvA_2_like
InterPro
IPR012340
Domain
Nucleic acid-binding, OB-fold
G3DSA:2.40.50.140\"[319-391]TOB_NA_bd_sub
InterPro
IPR013839
Domain
NAD-dependent DNA ligase, adenylation
PF01653\"[2-318]TDNA_ligase_aden
InterPro
IPR013840
Domain
NAD-dependent DNA ligase, N-terminal
SM00532\"[6-448]TLIGANc
noIPR
unintegrated
unintegrated
G3DSA:1.10.150.20\"[435-502]T\"[503-585]TG3DSA:1.10.150.20
G3DSA:1.10.287.610\"[2-64]TG3DSA:1.10.287.610
G3DSA:3.30.470.30\"[121-252]TG3DSA:3.30.470.30
G3DSA:3.40.50.10190\"[588-667]TG3DSA:3.40.50.10190
PIRSF001604\"[1-669]TLigA
PTHR11107\"[10-669]TPTHR11107
PTHR11107:SF5\"[10-669]TPTHR11107:SF5
SSF50249\"[317-402]TNucleic_acid_OB
SSF52113\"[588-669]TSSF52113
SSF56091\"[3-318]TSSF56091


","No hit to the COGs database.","***** IPB001679 (NAD-dependent DNA ligase) with a combined E-value of 5.1e-139. IPB001679A 21-63 IPB001679B 114-158 IPB001679C 171-182 IPB001679D 198-220 IPB001679E 280-292 IPB001679F 300-341 IPB001679G 345-387 IPB001679H 437-476 IPB001679I 488-533***** BP02763 (DNA LIGASE REPLICATION SUBUNIT PROTEIN) with a combined E-value of 1.1e-13. BP02763A 597-606 BP02763B 611-645","Residues 452-560 are 30% similar to a (DNA LIGASE EC 6.5.1.2) protein domain (PD202704) which is seen in DNLJ_TREPA.Residues 572-667 are 41% similar to a (LIGASE DNA REPLICATION NAD) protein domain (PD002763) which is seen in O66880_AQUAE.Residues 27-447 are 45% similar to a (LIGASE DNA NAD NAD+) protein domain (PD003944) which is seen in DNLJ_ECOLI.Residues 489-570 are 41% similar to a (DNA LIGASE REPAIR NAD) protein domain (PD001207) which is seen in O66880_AQUAE.","","","","","Mon Dec 4 09:17:46 2000","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","Mon Dec 4 09:17:46 2000","Mon Dec 4 09:17:46 2000","","","Wed Mar 22 16:42:57 MST 2000","Wed Dec 3 09:56:45 2003","Mon Dec 4 09:17:46 2000","Tue Feb 20 11:24:37 MST 2001","Tue Feb 20 11:24:37 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 20 11:24:37 MST 2001","-60% similar to PDB:1DGS CRYSTAL STRUCTURE OF NAD+-DEPENDENT DNA LIGASE FROM T. FILIFORMIS (E_value = 6.9E_124);-61% similar to PDB:1V9P Crystal Structure Of Nad+-Dependent DNA Ligase (E_value = 6.9E_116);-65% similar to PDB:1TAE Structural rearrangement accompanying NAD+ synthesis within a bacterial DNA ligase crystal (E_value = 3.4E_70);-64% similar to PDB:1B04 STRUCTURE OF THE ADENYLATION DOMAIN OF AN NAD+ DEPENDENT LIGASE (E_value = 1.3E_69);-65% similar to PDB:1TA8 Structural rearrangement accompanying NAD+ synthesis within a bacterial DNA ligase crystal (E_value = 1.7E_69);","","","Residues 2 to 318 (E-value = 3.5e-145) place PG1107 in the DNA_ligase_aden family which is described as NAD-dependent DNA ligase adenylation domain (PF01653)Residues 320 to 402 (E-value = 1.3e-38) place PG1107 in the DNA_ligase_OB family which is described as NAD-dependent DNA ligase OB-fold domain (PF03120)Residues 406 to 434 (E-value = 7e-09) place PG1107 in the DNA_ligase_ZBD family which is described as NAD-dependent DNA ligase C4 zinc finger domain (PF03119)Residues 590 to 667 (E-value = 4.4e-15) place PG1107 in the BRCT family which is described as BRCA1 C Terminus (BRCT) domain (PF00533)","Wed Dec 3 09:56:45 2003","34540958","","","Brannigan,J.A., Ashford,S.R., Doherty,A.J., Timson,D.J. and Wigley,D.B. 1999. Nucleotide sequence, heterologous expression and novel purification of DNA ligase from Bacillus stearothermophilus(1). Biochim. Biophys. Acta 1432 (2): 413-418. PubMed: 10407164.","","Tue Feb 20 11:24:37 MST 2001","1","","23","PG1253" "PG1108","1332214","1331690","525","ATGACCGACCTTTTCTCTTCAGAGCAAGTACGGCTCCGAGCCCTTGAACCGGAAGATTTGGACTTTCTCTACCTATGGGAAAATGATGCCGAATTGCGTGAGAGTGGCAATATGCTGGTACCTATCGGACGCAATCGGCTGAAAGAATATATCGAAAAGAGTTCTGAGGGTTTGATGGAGTTGGGCATGATGCGTCTTGTCATCTGCTTGTCGGATGACGATAAGCCTGTCGGTGCGATAGATCTGTATGAGTACGATGCCTTTCATCGACGTGTAGCCGTAGGGTTATTCGTTATTCCCGAATACCGTCGGCTGGGAATAGCCGTCGAGTCTCTCCGCAAGATATCCCATTATGTTTTAGACTATTTACGCTTGCATCAGATCATCGCTTATGTGCTGGAAGATAACAAGCCGAGCCGGATGCTGTTCGAAGCTGCCGGCTTCGAGCATACAGCCACCCTCCGCCAATGGATGTGGCATGCCGGCGATTATTCTGATGTTTTGCTTTATCAGTTATGGAAAAGA","5.00","-6.84","20618","MTDLFSSEQVRLRALEPEDLDFLYLWENDAELRESGNMLVPIGRNRLKEYIEKSSEGLMELGMMRLVICLSDDDKPVGAIDLYEYDAFHRRVAVGLFVIPEYRRLGIAVESLRKISHYVLDYLRLHQIIAYVLEDNKPSRMLFEAAGFEHTATLRQWMWHAGDYSDVLLYQLWKR","1332214 1331690","TIGR ID: PG1254","acetyltransferase (possible ribosomal-protein-alanine N-acetyltransferase)","Cytoplasm","Numerous weak hits in gapped BLAST; e.g. residues 6-170 are 27% similar to gbAAG20227.1 probable acetyltransferase; Hat2 of Halobacterium sp. NRC-1, residues 64-175 are 30% similar to dbjBAB04418.1 ribosomal-protein-alanine N-acetyltransferase of Bacillus halodurans, residues 72-163 are 34% similar to gbAAB84419.1 putative alanine acetyl transferase of Bacillus subtilis.","
InterPro
IPR000182
Domain
GCN5-related N-acetyltransferase
PF00583\"[68-149]TAcetyltransf_1
PS51186\"[10-174]TGNAT
noIPR
unintegrated
unintegrated
G3DSA:3.40.630.30\"[4-175]TG3DSA:3.40.630.30
PTHR13256\"[100-153]TPTHR13256
SSF55729\"[1-175]TSSF55729


","BeTs to 6 clades of COG1670COG name: Acetyltransferases, including N-acetylases of ribosomal proteinsFunctional Class: JThe phylogenetic pattern of COG1670 is ----y-v-EBR-uj-p----xNumber of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","Residues 77-159 are 36% similar to a (PROTEIN TRANSFERASE ACETYLTRANSFERASE ACYLTRANSFERASE) protein domain (PD000189) which is seen in O34569_BACSU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Jul 5 18:28:39 MDT 2001","Wed Jul 23 15:07:06 2008","Tue Dec 17 16:20:20 2002","","Tue Feb 20 11:34:18 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Jul 23 15:07:06 2008","No significant hits to the PDB database (E-value < E-10).","","","Residues 68 to 149 (E-value = 3.7e-11) place PG1108 in the Acetyltransf_1 family which is described as Acetyltransferase (GNAT) family (PF00583)","Wed Mar 14 17:03:50 MST 2001","34540959","","","","","","1","","23","PG1254" "PG1109","1332844","1332224","621","ATGATACAGAAATATTCTTCGCGTCTGCTTGAGAAGGCGATAGACCAATTTGCCACATTGCCGGGTGTAGGGCGCAAGACAGCCCTGCGCCTGGCTTTGTACTTATTGCGCCAACCTGTGGAAAATACCCGTCAATTTGCAGCAGCCCTTGTAGATCTTCGGGAACATATTTCCTATTGCAGGCACTGTCATAATATCAGTGATTCCGATGTTTGTACTATCTGTGCAGACCCCACTCGGGATCAGAGTACACTCTGCGTAGTAGAGAATATCCGTGACGTTATGGCTATCGAGAATACCTCACAGTATCGAGGCTTGTATCATGTACTCGGTGGAGTCATATCTCCCATGGATGGGATCGGCCCGGGCGATTTGCAAATAGATTCTTTGGTGCATCGAGTAGCTTCTGAGCAGATTCATGAGGTTATATTGGCTTTGAGTACGACGATGGAGGGCGATACTACCAACTTTTTCCTCTTTCGCAAGTTGGAGCCTACCGGCGTTCGGGTCAGTGTAATTGCTCGAGGCATTGCTATAGGCGATGAGATCGAATATGCCGATGAGATTACCCTCGGTCGTTCTATTCTCAATCGTACCGATTTCTCCGACTCAGTCAAATTC","5.60","-4.79","23041","MIQKYSSRLLEKAIDQFATLPGVGRKTALRLALYLLRQPVENTRQFAAALVDLREHISYCRHCHNISDSDVCTICADPTRDQSTLCVVENIRDVMAIENTSQYRGLYHVLGGVISPMDGIGPGDLQIDSLVHRVASEQIHEVILALSTTMEGDTTNFFLFRKLEPTGVRVSVIARGIAIGDEIEYADEITLGRSILNRTDFSDSVKF","1332844 1332224","TIGR ID: PG1255","recombination/repair protein","Cytoplasm","This sequence is orthologous to CT240.Numerous significant hits to recombination protein in gapped BLAST; e.g. residues 10-200 are 47% similar to emb|CAB64478.1| recombination protein of Streptococcus pneumoniae, residues 10-200 are 46% similar to sp|P96053|RECR_STRTR recombination protein of Streptococcus thermophilus, residues 10-200 are 45% similar to dbj|BAB03755.1| DNA repair and genetic recombination of Bacillus halodurans, residues 10-202 are 48% similar to sp|Q9ZNA2|RECR_DEIRA recombination protein of Deinococcus radiodurans.","
InterPro
IPR000093
Family
RecR protein
PF02132\"[41-82]TRecR
TIGR00615\"[4-199]TrecR
PS01300\"[60-81]TRECR
InterPro
IPR003583
Domain
Helix-hairpin-helix DNA-binding, class 1
SM00278\"[15-34]THhH1
InterPro
IPR006154
Domain
Toprim subdomain
SM00493\"[83-168]TTOPRIM
InterPro
IPR006171
Domain
TOPRIM
PF01751\"[83-176]TToprim
noIPR
unintegrated
unintegrated
SSF111304\"[4-204]TSSF111304


","BeTs to 9 clades of COG0353COG name: Recombinational DNA repair proteinFunctional Class: LThe phylogenetic pattern of COG0353 is -----q-cebrhuj---linxNumber of proteins in this genome belonging to this COG is 1","***** IPB000093 (RecR putative zinc finger) with a combined E-value of 1.7e-57. IPB000093A 13-36 IPB000093B 85-120 IPB000093C 130-159 IPB000093D 168-198","Residues 31-200 are 46% similar to a (PROTEIN RECOMBINATION RECR DNA) protein domain (PD006826) which is seen in Q9ZHC4_STRPN.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Mar 14 17:06:31 MST 2001","Tue Feb 20 11:55:53 MST 2001","Tue Feb 20 11:55:53 MST 2001","Tue Feb 20 11:55:53 MST 2001","Tue Feb 20 11:55:53 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 20 11:55:53 MST 2001","-67% similar to PDB:1VDD Crystal structure of recombinational repair protein RecR (E_value = 3.0E_48);","","","Residues 41 to 82 (E-value = 2.7e-13) place PG1109 in the RecR family which is described as RecR protein (PF02132)Residues 83 to 176 (E-value = 2.2e-06) place PG1109 in the Toprim family which is described as Toprim domain (PF01751)","Wed Mar 14 17:06:31 MST 2001","34540960","","","","","","1","","23","PG1255" "PG1110","1334355","1332844","1512","ATGGCCGTCCTGGAGGATGGCAAACTCGTGGAGCTTCAACGCGAACCGCGCAATCTTTCTTTTGCAGTGGGGGATATTTACCTCGGTAAAGTGAAGAAGGTGATGCCCGGTCTGAACGCTGCTTTCGTGGATGTAGGATACAAGAAGGACGCATTTCTTCATTATCTTGATTTGGGCTTGACTTTCGATGCTCAGCAGAAGATGATGGAGATGATGACAAAAAGCAAATCGATTCCATCCTTGTCCAAAGTGCCCCTCGGCAGCGACCTCCCTAAAGAGGGGAAGATCGCAGATGTGCTCAAGGCCGGACAGCAGATCTTGGTGCAGATAGCCAAAGAGCCGATCTCTACCAAAGGCCCACGCCTGACTGCCGAGCTTTCTTTTGCCGGCCGTTCATTGGTTTTGGTACCCTTTGCAGACAAAGTGTCGGTGTCTCAGAAGATTCGTTCTGCCGAAGAGCGAGCACGCTTGCGGCAGTTGATTATCAGCATCAAGCCCAAGAATTTTAGCGTTATCATACGCACTTCTGCTGAAGGTAAACGGGCATCCGAATTGGACAAAGAGTTGCAGAGCCTACTACGTCGTTGGGACGACAACATCAAGAAGCTTTTGCGTGCCAAGGCTCCGTCCATTGTTTATGAGGAAGCCAGCCGTACTCTGGGACTCTTGAGGGACAACTTCAATCCCTCTTACCAGAGTATTATTGTCAATGACAAGGCTTTTCGGGACAGTTTGAGCGACTATGTCGAGTTGATAGCTCCGGGACGGGAGGAAATCGTTCAGTATTATCAGGGCGAACTACCCATTTTCGACCATTTTGCCATTACGAAGCAGATTAAAGCTCTCTTCGGACGTACTGTTACGTATAAGAGTGGTGCTTATCTGATTATTGAGCAGACCGAGGCCATGCACGTGGTGGATGTTAATAGCGGTAACCGCTCGCGTGGCAGTACCGAGCAGGAAGCAACGGCCGTCGATGTCAATATGGCTGCAGCCGAAGAACTGGCCAGACAATTGCGCTTGCGCGATATGGGTGGTATCATCGTAGTGGACTTCATCGATATGAGCGAAGCCCAGCACCGTCAGCAGTTGTACGAACACATGGTCAAATTGATGTCGGCTGACAGAGCGCGACACAATATCTTGCCATTGAGCAAATTCGGCGTTATGCAGATTACGCGTCAGCGTGTTCGTCCGGCGATGGTCATCCATACCGAAGAGTGTTGTCCCACATGTTTGGGTACCGGCAAGGTAGAATCCTCCATACTCTTCACGGATCAGTTGGAAGAAAAAGTGGCCAAAATGGTCACGGAGCACCAAGTCAAACAATTCGTTCTTCACGTACATCCATACGTGGCAGCATACCTCAAGAAAGGTTTCCTTTCTTCTATCTTGAAGAAATGGAAACTCAAGTATGCCAAGGGGATCAAACTTATCCCCGATGAGAGTCTGGGATTCCTGGACTACACATTTTACGACTACGACGGCAACGAGCTGGATATTTTGGATGAA","9.40","8.31","56853","MAVLEDGKLVELQREPRNLSFAVGDIYLGKVKKVMPGLNAAFVDVGYKKDAFLHYLDLGLTFDAQQKMMEMMTKSKSIPSLSKVPLGSDLPKEGKIADVLKAGQQILVQIAKEPISTKGPRLTAELSFAGRSLVLVPFADKVSVSQKIRSAEERARLRQLIISIKPKNFSVIIRTSAEGKRASELDKELQSLLRRWDDNIKKLLRAKAPSIVYEEASRTLGLLRDNFNPSYQSIIVNDKAFRDSLSDYVELIAPGREEIVQYYQGELPIFDHFAITKQIKALFGRTVTYKSGAYLIIEQTEAMHVVDVNSGNRSRGSTEQEATAVDVNMAAAEELARQLRLRDMGGIIVVDFIDMSEAQHRQQLYEHMVKLMSADRARHNILPLSKFGVMQITRQRVRPAMVIHTEECCPTCLGTGKVESSILFTDQLEEKVAKMVTEHQVKQFVLHVHPYVAAYLKKGFLSSILKKWKLKYAKGIKLIPDESLGFLDYTFYDYDGNELDILDE","1334400 1332844","In E. coli, the function of the CafA protein is not known; itis known that the N-terminal amino acids are similar to the ribonuclease E in E. coli (EC 3.1.26.-). In Haemophilus influenzae this protein is believed to be involved in processing of the 5' end of 16S RNA and could be involved in chromosome segregation and cell division. It is also thought that this protein may regulate the formation of the cytoplasmic axial filament bundles or may be a component of that structure (gi: 1168735).TIGR ID: PG1256","probable cytoplasmic axial filament protein/ribonuclease G","Cytoplasm","This protein is similar to CT808, a predicted cytoplasmic axial filament protein/ribonuclease G from Chlamydia trachomatis.Numerous significant hits to ribonuclease G (cytoplasmic axial filament protein) in gapped BLAST; e.g. residues 1-454 are 35% similar to gb|AAF83935.1|AE003948_7 ribonuclease G of Xylella fastidiosa, residues 2-458 are 32% similar to gb|AAF39067.1| ribonuclease G of Chlamydia muridarum, residues 2-458 are 31% similar to gb|AAD19095.1| axial filament protein of Chlamydophila pneumoniae CWL029.This sequence is similar to BT1500.","
InterPro
IPR003029
Domain
RNA binding S1
PF00575\"[20-125]TS1
SM00316\"[22-125]TS1
InterPro
IPR004659
Domain
Ribonuclease E and G
TIGR00757\"[1-430]TRNaseEG
InterPro
IPR012340
Domain
Nucleic acid-binding, OB-fold
G3DSA:2.40.50.140\"[15-131]TOB_NA_bd_sub
noIPR
unintegrated
unintegrated
SSF50249\"[24-131]TNucleic_acid_OB


","BeTs to 8 clades of COG1530COG name: Ribonucleases G and EFunctional Class: JThe phylogenetic pattern of COG1530 is ---k-qvcE-rH------inxNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 23-401 are 32% similar to a (PROTEIN RIBONUCLEASE E AXIAL FILAMENT RNASE HYDROLASE) protein domain (PD007819) which is seen in CAFA_HAEIN.","","Thu Jun 14 11:24:14 MDT 2001","","Thu Jun 14 11:24:14 MDT 2001","Thu Jun 14 11:24:14 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:24:14 MDT 2001","Thu Jun 14 11:24:14 MDT 2001","","Thu Dec 4 15:41:16 2003","Fri Apr 7 10:45:56 MDT 2000","Thu Dec 4 15:41:16 2003","Tue Jan 7 14:32:15 2003","","Fri Jun 22 16:10:46 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Fri Apr 7 10:45:56 MDT 2000","Fri Mar 23 13:55:49 MST 2001","-49% similar to PDB:2BX2 CATALYTIC DOMAIN OF E. COLI RNASE E (E_value = 6.5E_55);-49% similar to PDB:2C0B CATALYTIC DOMAIN OF E. COLI RNASE E IN COMPLEX WITH 13-MER RNA (E_value = 6.5E_55);-49% similar to PDB:2C4R CATALYTIC DOMAIN OF E. COLI RNASE E (E_value = 6.5E_55);","","","Residues 20 to 125 (E-value = 4.8e-08) place PG1110 in the S1 family which is described as S1 RNA binding domain (PF00575)","Fri Jun 22 16:10:46 MDT 2001","34540961","","","Wachi,M., Umitsuki,G., Shimizu,M., Takada,A. and Nagai,K. 1999. Escherichia coli cafA gene encodes a novel RNase, designated as RNase G, involved in processing of the 5' end of 16S rRNA. Biochem. Biophys. Res. Commun. 259 (2): 483-488. PubMed: 10362534.Okada,Y., Wachi,M., Hirata,A., Suzuki,K., Nagai,K. and Matsuhashi,M. 1994. Cytoplasmic axial filaments in Escherichia coli cells: possible function in the mechanism of chromosome segregation and cell division. J. Bacteriol. 176 (3): 917-922. PubMed: 8300545.","","Thu Dec 4 15:41:16 2003","1","","23","PG1256" "PG1111","1334955","1334680","276","ATGACGAAAGCTGACGTAGTGAACGCTATTGCGAAGTCGACAGGGATTGATAAAGAAACGACCCTGAAAGTCGTAGAGTCGTTCATGGACACTATCAAAGACTCCCTTTCGGAAGGTGATAATGTATATCTCCGCGGATTTGGTAGCTTCATTGTGAAGGAAAGAGCTGAGAAGACAGCACGTAATATTTCGAAGCAGACGACTATCATCATCCCCAAAAGGAATATTCCGGCGTTTAAGCCTTCGAAAATCTTTATGAGTCAGATGAAACAAGAC","10.40","4.99","10282","MTKADVVNAIAKSTGIDKETTLKVVESFMDTIKDSLSEGDNVYLRGFGSFIVKERAEKTARNISKQTTIIIPKRNIPAFKPSKIFMSQMKQD","1334955 1334680","TIGR ID: PG1258","histone-like DNA binding protein, IHFA, IHFB, or DBH","Cytoplasm, Periplasm","Numerous significant and weak hits to DNA-binding protein in gapped BLAST; e.g. residues 1-90 are 38% similar to dbj|BAA07273.1| DNA binding protein HU of Bacillus stearothermophilus, residues 1-83 are 42% similar to pir||JC1208 DNA-binding protein HU of Bacillus subtilis, residues 1-83 are 40% similar to dbj|BAB05028.1| non-specific DNA-binding protein II (HB) (HU) of Bacillus halodurans.","
InterPro
IPR000119
Family
Histone-like bacterial DNA-binding protein
PD000945\"[8-85]TBac_DNAbind
PR01727\"[40-55]T\"[74-88]TDNABINDINGHU
G3DSA:4.10.520.10\"[1-89]THist_DNA_bd_bac
PF00216\"[1-90]TBac_DNA_binding
SM00411\"[1-90]TBHL
InterPro
IPR010992
Family
IHF-like DNA-binding
SSF47729\"[1-91]TIHF_like_DNA_bnd


","BeTs to 11 clades of COG0776COG name: Histone-like DNA-binding proteinFunctional Class: LThe phylogenetic pattern of COG0776 is -----QvcEBrHujgpolinXNumber of proteins in this genome belonging to this COG is 3","***** IPB000119 (Bacterial histone-like DNA-binding protein) with a combined E-value of 5.7e-16. IPB000119 39-89","Residues 3-90 are 38% similar to a (DNA-BINDING DNA PROTEIN CONDENSATION FACTOR INTEGRATION) protein domain (PD000945) which is seen in DBH_BACST.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Mar 22 11:50:46 MST 2000","Tue Feb 20 13:01:22 MST 2001","Tue Feb 20 12:13:28 MST 2001","Tue Feb 20 12:13:28 MST 2001","Tue Feb 20 12:13:28 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1-81 are 32% similar to PG0106, a predicted DNA-binding protein.","Tue Feb 20 13:01:22 MST 2001","Tue Feb 20 12:13:28 MST 2001","-62% similar to PDB:1HUE HISTONE-LIKE PROTEIN (E_value = 6.1E_15);-62% similar to PDB:1HUU DNA-BINDING PROTEIN HU FROM BACILLUS STEAROTHERMOPHILUS (E_value = 6.1E_15);-61% similar to PDB:1B8Z HU FROM THERMOTOGA MARITIMA (E_value = 3.7E_12);-61% similar to PDB:1RIY HU mutant V42I from Thermotoga maritima (E_value = 4.8E_12);-51% similar to PDB:1MUL Crystal structure of the E. coli HU alpha2 protein (E_value = 1.2E_10);","","","Residues 1 to 90 (E-value = 1.9e-27) place PG1111 in the Bac_DNA_binding family which is described as Bacterial DNA-binding protein (PF00216)","Wed Mar 14 17:15:14 MST 2001","34540963","","","Imber,R., Kimura,M., Groch,N. and Heinemann,U. 1987. DNA-binding properties and primary structure of HB protein from Bacillus globigii. Eur. J. Biochem. 165 (3): 547-552. PubMed: 3595600.","","Fri Feb 23 11:27:31 MST 2001","1","","23","PG1258" "PG1112","1335558","1335070","489","GTGTCCGAAAGCATCGAATCATACGGCATCAGGCTACTGAACGTCTATCGCGAAACTATTTGCGACGGACCGGGCTTGCACTATTCTATCTATTTGGCTGGTTGTCGTCATGCATGTCCCGGTTGCCACAATCCCTCCAGTTGGGATCCGGAAGCCGGTGTATTGATGACGGACTCGATCCTCGGCAATATCATCCGAGAGATCAATGCCAATCCTCTATTGGATGGGATCACACTCTCCGGAGGTGATCCTTTTTACAATCCTGCCGGACTTACCTGCCTACTGCAGAGACTGCGTGCATCCTGTACCTTGCCGATATGGTGCTATACGGGATACACACTCGAACAGTTGGAGACCGATCCGATGCTTTCCGCTCCTCTTGCTTTGATCGATGTTTTGGTCGATGGCCCATTCGTGCGCGAGCTGTTCGATCCCACTTTACTGTGGCGTGGTAGTAGCAACCAGTGTATTATTCGGTTGCATGAGAAT","4.50","-8.42","17950","VSESIESYGIRLLNVYRETICDGPGLHYSIYLAGCRHACPGCHNPSSWDPEAGVLMTDSILGNIIREINANPLLDGITLSGGDPFYNPAGLTCLLQRLRASCTLPIWCYTGYTLEQLETDPMLSAPLALIDVLVDGPFVRELFDPTLLWRGSSNQCIIRLHEN","1335558 1335070","TIGR ID: PG1259","anaerobic ribonucleotide reductase activating protein (anaerobic ribonucleoside-triphosphate reductase activating protein) (class III anaerobic ribonucleotide reductase small component)","Cytoplasm","Several significant hits to anaerobic ribonucleotide reductase activating protein and anaerobic ribonucleoside-triphosphate reductase activating protein in gapped BLAST; e.g. residues 16-160 are 42% similar to gb|AAC77194.1| anaerobic ribonucleotide reductase activating protein of Escherichia coli K12, residues 13-159 are 41% similar to gb|AAC22810.1| anaerobic ribonucleoside-triphosphate reductase activating protein of Haemophilus influenzae Rd, residues 10-160 are 40% similar to gb|AAF60352.1|AF242390_2 anaerobic ribonucleoside-triphosphate reductase activating protein of Salmonella typhimurium.","
InterPro
IPR007197
Domain
Radical SAM
PF04055\"[29-88]TRadical_SAM
InterPro
IPR012837
Family
Ribonucleoside-triphosphate reductase activating, anaerobic
TIGR02491\"[11-161]TNrdG: anaerobic ribonucleoside-triphosphate


","BeTs to 7 clades of COG0602COG name: Organic radical activating enzymesFunctional Class: OThe phylogenetic pattern of COG0602 is amTK-q-cEB-Huj------xNumber of proteins in this genome belonging to this COG is 1","***** IPB001989 (Radical activating enzymes) with a combined E-value of 9.4e-19. IPB001989A 21-48 IPB001989B 76-87","Residues 48-160 are 42% similar to a (ANAEROBIC REDUCTASE PROTEIN RIBONUCLEOSIDE-TRIPHOSPHATE) protein domain (PD016381) which is seen in NRDG_ECOLI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Mar 15 08:43:48 MST 2001","Tue Feb 20 13:27:42 MST 2001","Tue Feb 20 13:27:42 MST 2001","Tue Feb 20 13:27:42 MST 2001","Tue Feb 20 13:27:42 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 20 13:27:42 MST 2001","-56% similar to PDB:1I5P INSECTICIDAL CRYSTAL PROTEIN CRY2AA (E_value = );-57% similar to PDB:1VK3 Crystal structure of Phosphoribosylformylglycinamidine synthase II (TM1246) from Thermotoga maritima at 2.15 A resolution (E_value = );-57% similar to PDB:2HRU T. maritima PurL complexed with ADP (E_value = );-57% similar to PDB:2HRY T. maritima PurL complexed with AMPPCP (E_value = );-57% similar to PDB:2HS0 T. maritima PurL complexed with ATP (E_value = );","","","No significant hits to the Pfam 11.0 database","Wed Mar 14 17:21:05 MST 2001","34540964","","","","","","1","","23","PG1259" "PG1113","1337987","1335594","2394","ATGGAAGAGGTAATCCTTCGCATCGTAAAGCGTGATGGTCATGTGCAGTCGTTCGATCCGGAAAAAATCCGTCAGGCGATAATCAAGGCTTATCGCGCAGGAGGTGTGCACGAAGAAGCTGCACGTATCGACAATATTGTCCAGTCTGTAACCGATTTTGCTCGTCAGAGCGGTGAGCTTGTCACCGTGGAACAAATACAGGATCGTGTCGAGGAGGAACTGATGCGTTTGAATCCTTTCATTGCCAAAAAATATATTATCTATCGAGAGTGGCGCACCGTAGAGCGTGACAAGCGTACATCCATGAAGCATACGATGGACGGCATCGTAACGATAGAGAAGAACGATGTGAATCTGGGTAATGCCAACATGAGTTCGCATACTCCTGCAGGTCAAATGATGACTTTTGCTTCGGAAGTAACCAAGGACTATGCCAGCAAATATCTGCTTTCGCTACGCTATAGCAGAGCACACAGGGCAGGAGATATACATATTCATGATTTGGACTATTATCCGACCAAAACGACTACATGTGTCCAGTATGATATAGCAGACCTCTACGAACGGGGGTTCCGTACCAAAAACGGCAGCATCCGTACACCGCAGAATATCCATAGCTATGCAACGCTGGCTACCATCATATTCCAGACCAATCAGAACGAACAGCATGGCGGACAGGCTATCCCGGCCTTTGATTTCTTCATGGCTCCGGGTGTGCACAAATCGTTCGTCACGCATCTTATAGAGCGTCTCCGCTTCGTGCTCGAACTCCGGCAGCCAACCAATACCGACTTAAGTACGACTCTTCCCAAGGCTATTCGGAACCTAACGCCACTTTTGACAGATTCACCTCAGGAGGCCGGGAGGCTATATGAGGGACTATGTGCGGCGTCTTTCCCTTTTTCGAGTACAGAGGTGGAGATCGCTCTTGCCACAGCTTTCCGAAAGACGCGTAAGGATACGCATCAGGCTATGGAAGGCTTCATCCACAACTTGAATACGATGCACTCTCGTGGAGGCAATCAGGTTGTATTCAGTTCCATCAATTACGGCACTGATACTTCGCCCGAAGGTCGAATGGTGATGGAGGAGTTGTTACGTGCCACGGAGGAAGGTTTGGGGCATGGTGAAGTACCCATCTTCCCGATTCAGATCTTCAAAGTCAAAGAGGGGATCAACTATTCCGAAGCGGATGTAAAGTCGGCATTGGAAAACTTTGACGATGCGATGGCCGGCAAGGTGCTTTTCTCTGCTCCGAACTTCGATTTGCTGCTGAAGGCATGTGCCACGACAGCCAAAGCTCTCTTCCCGAATTTCGTCTTTCTCGATACGCCATTCAATCTGCATGAGGATTGGCGAGCAGACGATCCCAAGCGTTATCTGCAAGAGGTGGCTACCATGGGTTGTCGTACGCGAGTGTTTGACAATGTAAACGGCCCGAAATCGTCAATCGGACGAGGAAATCTCTCTTTTACCTCTATGAACCTTCCCCGTTTGGCTATCGAAGCCAGACATGAGGCAGAAGAGAACTGCCCTGATGGCGACAAGGAAACGATACGCAGTGAAGCACGCCTTCTCTTCCTGGAAAGTGTTCGCAGAATGTCTACACTCATTGCAGACCAACTCTATGACCGCTATTGCTATCAGCGTACAGCATTAGCACGCCAATTCCCCTTCATGATGGGGAATGATGTTTGGAAGGGTGGTGCTGCCTTAGAACCGAACGAGGAAGTTGGCGATGTCATCAAATCCGGTACTCTCTGTATCGGTTTTATCGGAGGGCACAATGCGATGGTGGCCATCTACGGTGAAGGACATGCTCACAACAAGGCGGCTTGGAATACGCTATACGATGCCATTTCGGTCATGAACGATGTCGCTCAGGAGTATAAACGGAAGTATCATCTGAATTACTCTGTCTTGGCTACTCCGGCAGAAGGTCTTTCCGGTCGTTTTACACGAATGGATAGAAAACGCTACGGGATTATTCCCGGGGTAACGGATTTGGACTATTACGTCAATTCTTTCCATGTGGATGTTCGCGAATCGATAGGTATAGCTGAAAAGATCAAGTGCGAGGCTCCTTTCCATGCTATTACCGGCGGTGGCCATATTACTTATGTGGAGTTGGATGGCGAAGCTAAGAAGAATGTATCGGTTATCCTCAAAATTGTCAAGATGATGAAGGATGAAAACATCGGCTATGGTTCGATTAATCATCCTGTGGATACCTGTAAGGGCTGTGGCTTCAAAGGTGTGATCTACGACAAATGTCCTGTATGCGGCAGCGATCGGATAGCTCGCTTGCGACGCATCACCGGCTATCTGACAGGGAGTCTCGATACATGGAATTCAGCCAAACAGGCCGAAGAGCACGATCGTGTAAAACACTTA","7.00","0.00","89798","MEEVILRIVKRDGHVQSFDPEKIRQAIIKAYRAGGVHEEAARIDNIVQSVTDFARQSGELVTVEQIQDRVEEELMRLNPFIAKKYIIYREWRTVERDKRTSMKHTMDGIVTIEKNDVNLGNANMSSHTPAGQMMTFASEVTKDYASKYLLSLRYSRAHRAGDIHIHDLDYYPTKTTTCVQYDIADLYERGFRTKNGSIRTPQNIHSYATLATIIFQTNQNEQHGGQAIPAFDFFMAPGVHKSFVTHLIERLRFVLELRQPTNTDLSTTLPKAIRNLTPLLTDSPQEAGRLYEGLCAASFPFSSTEVEIALATAFRKTRKDTHQAMEGFIHNLNTMHSRGGNQVVFSSINYGTDTSPEGRMVMEELLRATEEGLGHGEVPIFPIQIFKVKEGINYSEADVKSALENFDDAMAGKVLFSAPNFDLLLKACATTAKALFPNFVFLDTPFNLHEDWRADDPKRYLQEVATMGCRTRVFDNVNGPKSSIGRGNLSFTSMNLPRLAIEARHEAEENCPDGDKETIRSEARLLFLESVRRMSTLIADQLYDRYCYQRTALARQFPFMMGNDVWKGGAALEPNEEVGDVIKSGTLCIGFIGGHNAMVAIYGEGHAHNKAAWNTLYDAISVMNDVAQEYKRKYHLNYSVLATPAEGLSGRFTRMDRKRYGIIPGVTDLDYYVNSFHVDVRESIGIAEKIKCEAPFHAITGGGHITYVELDGEAKKNVSVILKIVKMMKDENIGYGSINHPVDTCKGCGFKGVIYDKCPVCGSDRIARLRRITGYLTGSLDTWNSAKQAEEHDRVKHL","1337987 1335594","TIGR ID: PG1260","probable anaerobic ribonucleoside-triphosphate reductase","Cytoplasm","Numerous significant hits to ribonucleoside-triphosphate reductase proteins in gapped BLAST; e.g. residues 8-798 are 27% similar to gb|AAA24226.1| ribonucleoside triphosphate reductase of Escherichia coli, residues 8-798 are 28% similar to gb|AAF60351.1|AF242390_1 anaerobic ribonucleoside-triphosphate reductase of Salmonella typhimurium, residues 8-798 are 27% similar to gb|AAC21751.1| anaerobic ribonucleoside-triphosphate reductase of Haemophilus influenzae Rd.This sequence is similar to BT1998.","
InterPro
IPR005144
Domain
ATP-cone
PF03477\"[6-96]TATP-cone
PS51161\"[6-96]TATP_CONE
InterPro
IPR012833
Domain
Ribonucleoside-triphosphate reductase, anaerobic
TIGR02487\"[119-797]TNrdD
noIPR
unintegrated
unintegrated
G3DSA:3.20.70.20\"[125-776]TG3DSA:3.20.70.20
PIRSF000358\"[5-798]TAn_RNR_III_large
PTHR21075\"[121-238]T\"[271-292]T\"[312-395]T\"[416-509]T\"[525-798]TPTHR21075
SSF51998\"[125-776]TSSF51998


","BeTs to 4 clades of COG1328COG name: Oxygen-sensitive ribonucleoside-triphosphate reductase NrdDFunctional Class: FThe phylogenetic pattern of COG1328 is -Mtk--v-e--h---------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 4-99 are 35% similar to a (REDUCTASE CHAIN RIBONUCLEOTIDE RIBONUCLEOSIDE LARGE) protein domain (PD010634) which is seen in O58101_PYRHO.Residues 648-798 are 39% similar to a (ANAEROBIC REDUCTASE) protein domain (PD017554) which is seen in NRDD_ECOLI.Residues 357-646 are 22% similar to a (ANAEROBIC REDUCTASE) protein domain (PD009884) which is seen in NRDD_ECOLI.Residues 649-794 are 36% similar to a (PROTEIN ANAEROBIC RIBONUCLEOSIDE-TRIPHOSPHATE REDUCTASE) protein domain (PD022241) which is seen in Y832_METJA.Residues 121-254 are 31% similar to a (ANAEROBIC REDUCTASE) protein domain (PD011513) which is seen in Q9ZAX6_BBBBB.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Fri Apr 20 10:10:07 MDT 2001","Tue Dec 9 17:01:38 2003","Tue Feb 20 13:56:00 MST 2001","","Tue Feb 20 13:56:00 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 20 13:56:00 MST 2001","-43% similar to PDB:1H78 STRUCTURAL BASIS FOR ALLOSTERIC SUBSTRATE SPECIFICITY REGULATION IN CLASS III RIBONUCLEOTIDE REDUCTASES: NRDD IN COMPLEX WITH DCTP. (E_value = 1.3E_52);-43% similar to PDB:1H79 STRUCTURAL BASIS FOR ALLOSTERIC SUBSTRATE SPECIFICITY REGULATION IN CLASS III RIBONUCLEOTIDE REDUCTASES: NRDD IN COMPLEX WITH DTTP (E_value = 1.3E_52);-43% similar to PDB:1H7A STRUCTURAL BASIS FOR ALLOSTERIC SUBSTRATE SPECIFICITY REGULATION IN CLASS III RIBONUCLEOTIDE REDUCTASES: NRDD IN COMPLEX WITH DATP (E_value = 1.3E_52);-43% similar to PDB:1H7B STRUCTURAL BASIS FOR ALLOSTERIC SUBSTRATE SPECIFICITY REGULATION IN CLASS III RIBONUCLEOTIDE REDUCTASES, NATIVE NRDD (E_value = 1.3E_52);-43% similar to PDB:1HK8 STRUCTURAL BASIS FOR ALLOSTERIC SUBSTRATE SPECIFICITY REGULATION IN CLASS III RIBONUCLEOTIDE REDUCTASES: NRDD IN COMPLEX WITH DGTP (E_value = 1.3E_52);","","","Residues 6 to 96 (E-value = 2.7e-19) place PG1113 in the ATP-cone family which is described as ATP cone domain (PF03477)","Fri Apr 20 10:10:07 MDT 2001","34540965","","","Sun,X., Harder,J., Krook,M., Jornvall,H., Sjoberg,B.-M. and Reichard,P. 1993. A possible glycine radical in anaerobic ribonucleotide reductase from Escherichia coli: Nucleotide sequence of the cloned nrdD gene. Proc. Natl. Acad. Sci. U.S.A. 90: 577-581. PubMed: 8421692.","","Tue Feb 20 13:56:00 MST 2001","1","","23","PG1260" "PG1114","1338514","1339668","1155","ATGAGTACAAATATAAGCCTATTCGCCCAAGTTATCCGCCTGTTGCCTCGTCCGTTGATTAAGAAGCTCTCTACAGAGTTTCAAGTAGACAAACATAGCAAACACTTCACAGGGTGGCAACACTTAGTGAGCATGATTTTCAGCCAATTCTCAAGCTGTATCTCCTTACGCGAGATTAGTAATGGCTTACGCTCAGCCACAGGTAACCTCAACCACTTAGGCATATGCACAGCACCCTCTAAGTCCAATTTATCTTATCAGAACGAGCACCGTACCTCAGACTTCTTTCGAGCGTGCTATTATGCCTTGCTAGATTATTTCGGACAGCAGGGTATGGGGCAAGGGCGTAAGTTTCGTTTTAAGCAACCCGTCAAGCTTCTAGACTCTACGACCATTACCCTTTGCCTTGCCCTATACGATTGGGCTAAATACACACATACGAAGGGAGCTGTTAAGCTTCATACACTCTTAGACTTCAAGACTCTGTTGCCTGAATATGTGCATATTAGTGATGGTAAAGGACATGATGGCAAGATGGCCAATTCTATTCCTATCCCAGCAGGAAGTATCGTCGTGGCTGACCGTGGCTATGCTGATACCGCCTTGCTCAATAGTTGGGACAGCACCCAAGTGAGTTTTGTAGTACGCCACCCAAGGTCCTTAAAATATGAGGTTATTCAAGAGTTGGAACTCCCAGAACATGGGCATCAGCAAATACTAGTAGATCAGAGAGTACGGCTCACAGGCGTTCAGACGCAAGGCAAGTACACTAAGCCATTGAGGCATATTGCCCTCTACAACGAGAAACATGGCGATGTCGTTGAGTTATTGACCAACATAGACACCCTTGCAGCAAGTAGTATAGCCTTGCTGTATCGTTCAAGATGGCTTATCGAGATTTTCTTTCGGAATTTGAAGCAACGCCTCAGCATGAAGGCCTTTCTTGGAACAACGCGCAATGCCGTAGAGGTGCAAATATGGACCGCTCTTATTACAATGCTTTTGATGGTCTATCTCAAGAGTATCGCCAAATATCGGTGGTGCTTGTCTAATCTTGTCTCTTCGCTAAGAATCAACACATTTACCAAGATGGATCTGATGCAATGGCTTAATGAGCCGTTTACGCCTCCGCCAGAGCCCGAAAATCAGCTCTTT","10.30","17.13","44057","MSTNISLFAQVIRLLPRPLIKKLSTEFQVDKHSKHFTGWQHLVSMIFSQFSSCISLREISNGLRSATGNLNHLGICTAPSKSNLSYQNEHRTSDFFRACYYALLDYFGQQGMGQGRKFRFKQPVKLLDSTTITLCLALYDWAKYTHTKGAVKLHTLLDFKTLLPEYVHISDGKGHDGKMANSIPIPAGSIVVADRGYADTALLNSWDSTQVSFVVRHPRSLKYEVIQELELPEHGHQQILVDQRVRLTGVQTQGKYTKPLRHIALYNEKHGDVVELLTNIDTLAASSIALLYRSRWLIEIFFRNLKQRLSMKAFLGTTRNAVEVQIWTALITMLLMVYLKSIAKYRWCLSNLVSSLRINTFTKMDLMQWLNEPFTPPPEPENQLF","1338514 1339668","Member of the IS5 family of IS elements.TIGR ID: PG1261","ISPg4 transposase","Inner membrane, Cytoplasm","PG1114 is equivalent to the previously sequenced AF148127 in GenBANK. See also AB009361, AB003149. Residues 20-337 are 27% similar to a transposase from B.subtilis (AB031551).","
InterPro
IPR002559
Domain
Transposase, IS4-like
PF01609\"[124-335]TTransposase_11
InterPro
IPR012337
Domain
Polynucleotidyl transferase, Ribonuclease H fold
SSF53098\"[185-350]TRNaseH_fold


","No hit to the COGs database.","***** PF01609 (Transposase (IS4 family)) with a combined E-value of 1.4e-08. PF01609B 288-309","Residues 271-336 are 45% similar to a (TRANSPOSASE PUTATIVE PLASMID ELEMENT) protein domain (PD003301) which is seen in Y4ZB_RHISN.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Fri Feb 9 08:41:15 MST 2001","Fri Feb 9 08:41:15 MST 2001","Wed Jan 3 13:19:59 MST 2001","Mon Dec 4 11:51:21 MST 2000","Mon Jun 4 12:56:02 MDT 2001","Mon Jun 4 12:56:02 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1114 is essentially identical to PG1461, PG0162, PG1920, PG0043, PG1447, PG0868, PG0445, PG0205, and PG0016, all ISPg4 transposases.","Mon Jun 4 12:56:02 MDT 2001","Mon Jun 4 12:56:02 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 124 to 335 (E-value = 8.3e-43) place PG1114 in the Transposase_11 family which is described as Transposase DDE domain (PF01609)","Mon Jun 4 12:56:02 MDT 2001","34540966","","Sawada,K., Kokeguchi,S., Hongyo,H., Sawada,S., Miyamoto,M.,Maeda,H., Nishimura,F., Takashiba,S. and Murayama,Y.Identification by subtractive hybridization of a novel insertionsequence specific for virulent strains of porphyromonas gingivalis. Infect. Immun. 67 (11), 5621-5625 (1999)","Nagai,T., Phan Tran,L.S., Inatsu,Y. and Itoh,Y.A new IS4 family insertion sequence, IS4Bsu1, responsible forgenetic instability of poly-gamma-glutamic acid production inbacillus subtilis. J. Bacteriol. 182 (9), 2387-2392 (2000)","Fri Feb 9 08:41:15 MST 2001","Fri Feb 9 08:41:15 MST 2001","1","","23","PG1261" "PG1115","1340727","1339828","900","ATGAAGACAAATATAGTTGATGTTTTTTGCATCATAGATGATTTCTCCAAGCTTTTTGATGAAACAATCAAGAAAAAGACCCTCGAAGAGGCAGACAAAAAATGCAGGAATAGAAAGTTTAAGATGTCGGACAGTGAGGTCATGACCATCCTGATCCTGTTTCATCTGTCAAGATACCGAGATTTGAAAGCTTTTTATCTTCAATACATCACCCATTCTTGTCGATCCGAGTTTCCACATCTTGTCTCTTATAATCGCTTTGTGGAGCTGCAAAGCAGGGGGGGGGGCAAGCTGATAGCATTTCTCAATATGTGTTGTTTGGGTCAATGTACAGGCATCTCTTTCATCGATTCCACCCCACTGAAGGTTTGTCATATCAAACGAGCTCATGGGCATAGGACAATGAGGGGATGGGCTCAAAAAGGCAAAAGCACCATGGGTTGGTTTTATGGATTCAAACTACATATTGTTATCAACGACAGGGGTGAAATCATCAACTATCAAATCACACCGGGCAATTGTGATGACAGAGAACCTCTGAAAGACGGAACATTCACCAAGAATCTTTTTGGCAAACTCATTGCCGATAGAGGCTACATTTCCCAAAACCTTTTTGACCGGCTCTTTGTCGATGACATCCACATGATAACCAAAATCAAAAAGAACATGAAGAACTCCCTGATGCATCTATATGACAAAGTTTTATTGAGAAAGAGAGCCTTGATCGAAACGGTCAATGATATACTCAAAAATCTCTGTCGGATAGAGCACACGAGACATCGCAGTGTCAACAATTTTGTCACCAACCTGATCTCCGGTATCATCGCTTACAACATCCTGCCTAAAAAGCCTGAACTCAATATTGAAATCATCAGAAACCCTAACTTTCCTATTTCCGCT","10.30","20.22","34930","MKTNIVDVFCIIDDFSKLFDETIKKKTLEEADKKCRNRKFKMSDSEVMTILILFHLSRYRDLKAFYLQYITHSCRSEFPHLVSYNRFVELQSRGGGKLIAFLNMCCLGQCTGISFIDSTPLKVCHIKRAHGHRTMRGWAQKGKSTMGWFYGFKLHIVINDRGEIINYQITPGNCDDREPLKDGTFTKNLFGKLIADRGYISQNLFDRLFVDDIHMITKIKKNMKNSLMHLYDKVLLRKRALIETVNDILKNLCRIEHTRHRSVNNFVTNLISGIIAYNILPKKPELNIEIIRNPNFPISA","1340727 1339828","TIGR ID: PG1262","ISPg3 (IS195) transposase","Cytoplasm","PG1115 is equivalent to the previously sequenced gb|AAC26596.1, a predicted IS195 transposase. Residues 75-286 are 52% similar to a transposase sequence from Pasteurella multocida (Y15510). ","
InterPro
IPR002559
Domain
Transposase, IS4-like
PF01609\"[113-279]TTransposase_11
InterPro
IPR012337
Domain
Polynucleotidyl transferase, Ribonuclease H fold
SSF53098\"[193-280]TRNaseH_fold


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 212-286 are 96% similar to a (PROTEASE PUTATIVE TRANSPOSASE PLASMID) protein domain (PD190030) which is seen in O87010_PORGI.Residues 135-208 are identical to a (TRANSPOSASE PLASMID PROTEIN ELEMENT) protein domain (PD004652) which is seen in O87010_PORGI.Residues 75-133 are 94% similar to a (PROTEASE PUTATIVE TRANSPOSASE PLASMID) protein domain (PD190029) which is seen in O87010_PORGI.Residues 1-74 are 98% similar to a (PUTATIVE PROTEASE PROTEASE) protein domain (PD203593) which is seen in O87010_PORGI.Residues 116-280 are 30% similar to a (HYPOTHETICAL 20.1 KD PROTEIN) protein domain (PD207068) which is seen in Q06444_BACST.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Feb 8 16:11:41 MST 2001","Thu Feb 8 16:11:41 MST 2001","Thu Feb 8 16:11:41 MST 2001","","Mon Jun 4 12:53:27 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1115 is essentially identical to PG0718, PG0236, PG0178 and PG1115, ISPg3 transposases. PG1115 is similar to fragments of PG1663 and PG1328, ISPg3 transposases, and to PG1660 and PG0273, which are ISPg3 transposase fragments.","Mon Jun 4 12:53:27 MDT 2001","Mon Jun 4 12:53:27 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 113 to 279 (E-value = 4.9e-36) place PG1115 in the Transposase_11 family which is described as Transposase DDE domain (PF01609)","Mon Jun 4 12:53:27 MDT 2001","34540967","","Lewis JP, Macrina FL, IS195, an insertion sequence-like element associated with protease genes in Porphyromonas gingivalis. Infect Immun 1998 Jul;66(7):3035-42, PubMed: 9632563.","Kehrenberg C, Werckenthin C, Schwarz S, Tn5706, a transposon-like element from Pasteurella multocida mediating tetracycline resistance. Antimicrob Agents Chemother 1998 Aug;42(8):2116-8, PubMed: 9687418.","Thu Feb 8 16:11:41 MST 2001","Thu Feb 8 16:11:41 MST 2001","1","","23","PG1262" "PG1119","1347140","1347526","387","ATGTCAATGATCGCTGTCTTTTTATCCCCTATCCTCCCACCTCACGGCACAGAGCCGATCAAGCAGCGGACAGTGGGTGCAAAAGTAAAACCTTTTTCCGAATCGGCAAAATCAATCGGCTCTTTTTTCAGGGCTGACGCTCAAGAAAAAGCTCGTCGCCTGATCCTCCCCCTAAAAAAAGAATCCCGACGCGCTCGGCGGAACAATTCCTCTATCAATCGGGCAGCAATCGCTTTTGCGGTCACAAAAGTACGCCTTTTTTCTTTACAGACAAATCTTTCAAAATCTTTTTTCAACCGGTTCGACAAAAAAACAGCCCCCGAAGAAAAGGACTCCCTCCCAAGAAAGAAGACAAAAGGGAGCGTATATATAATATGTTCGCGCGCG","11.80","19.18","14493","MSMIAVFLSPILPPHGTEPIKQRTVGAKVKPFSESAKSIGSFFRADAQEKARRLILPLKKESRRARRNNSSINRAAIAFAVTKVRLFSLQTNLSKSFFNRFDKKTAPEEKDSLPRKKTKGSVYIICSRA","1347140 1347526","NO TIGR ID corresponds to this gene.","hypothetical protein","Periplasm","No significant hits in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Feb 8 10:43:36 MST 2001","Thu Feb 8 10:43:36 MST 2001","Thu Feb 8 10:43:36 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","PG1119 is virtually identical to PG1459, PG0088 and PG1814, all hypothetical proteins.","Thu Feb 8 10:43:36 MST 2001","Tue Feb 20 14:47:58 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Feb 20 14:47:58 MST 2001","","","","","","","1","","","" "PG1120","1349294","1347666","1629","ATGAATAATTCGCATTTTGCTTTTGCCAAGCCGGTCAATGAGCCGGTTTATGGCTATGCCCCGGGTTCGCCGGAAAGAAAAAAACTGAAAGAGGAGCTTCAACGACAATTGTCTACGCCTATAGAGATTCCTATTATCATAGGAGGCAAAGAAATCCGAACGGGCGATACCGGCACTGTGGTGATGCCCCATAACCATGCTGTTCGACTGGCCACCTATCATCGGGTAGGGGAGAAAGAAGTGCTGCAAGCTATCGAAGCTGCCGAAAAGGCTCGTCAGGATTGGAGCCGTCTGCCATGGACTGAGCGTGCTTCCGTAATGTTGCGCATCGGAGAGTTGATCTCTACCAAATATCGCTATCAGCTGGCAGCTTCTGTAATGCTCGGACAGAGCAAGAATCCGATGCAGGCAGAGATCGATGCTCCCTGCGAGTTGATCGATTTCTTGCGTTTCGGTGCCTACTATGCGGGCCAGATCTATGCCGATCAACCCATCAGTGAGAAAGGCATTCTCAATCGGGTGGAGTACCGTTCGCTCGAAGGTTTCGTTTTGGCCGTTACTCCTTTCAATTTCACCAGTATTGCTTCCAACCTGAATCTGGCACCGGCCATGATGGGGAATACTACTATCTGGAAGCCTTCCACTACAGCTCTTCATAGCAACTACCTCCTTATGAAAATCTTCCAAGAGGCCGGTTTGCCCGATGGTGTGGTCAATTTCCTTCCCGGACAGGGTAGCTTGATCGGTCGGGTAGCCACGGCGAACGAACACTTGGCCGGTTTCCATTTTACCGGTTCTACTGCTACGTTCAACACGCTGTGGAAGAGCATCGCCGGCAATATAGATCGCTATCGTGGCTATCCCCGTATAGTGGGCGAAACGGGAGGAAAGAACTTCGTGATGGTTCATCCCTCGGCTGAAGCATGCGAAGTGGCTACGGCTCTTGTGCGCGGAGCTTTCGAGTATCAGGGACAAAAGTGTTCGGCTGCAAGTCGCGCATATATCCCTCGTTCTTTGTGGCCGAGCGTGAAAGAGGTGATGGGCGATATGCTCGACAGTATCAAAATGGGTGACGTAATGGAATTCGACAACTTTGTCAACGCCGTTATCGACGAAGCCTCTTTCGATAATATCATGAACTATTTGGCTGCCGCCAAGCGAGATTCAGATGCCAAGATCATATTCGGTGGTGAAGGAGATAAGAGCGTGGGTTACTTTATACGGCCTACCGTTATTGAAACGACAAATCCGCATTACGCAACGATGACGGATGAGCTTTTCGGCCCCGTCCTGACCGTATATGTCTATGAGGACAAAGACTTTGCCGATACGCTACGCCTTTGCGACAGTACCGGCCGTTACGGGCTGACCGGCTCCATCTTCTCTCGCGACCGCTATGCCATCGAACAGGCTTTGGATGCTCTGCGCTTCTCCGCCGGTAACTTCTACATCAATGACAAGCCGACGGGTGCCGTTGTAGGACAGCAACCTTTTGGCGGTGCGCGTGCCAGTGGAACTAACGACAAGGCAGGCGGGCCACTTAATCTGATGCGTTGGTGCAATCCACGTACCGTGAAAGAAACCTTCGTGCCACCGACGGATTATCCCTATCCGTTTTTGGCAAAGGAT","6.60","-2.03","59955","MNNSHFAFAKPVNEPVYGYAPGSPERKKLKEELQRQLSTPIEIPIIIGGKEIRTGDTGTVVMPHNHAVRLATYHRVGEKEVLQAIEAAEKARQDWSRLPWTERASVMLRIGELISTKYRYQLAASVMLGQSKNPMQAEIDAPCELIDFLRFGAYYAGQIYADQPISEKGILNRVEYRSLEGFVLAVTPFNFTSIASNLNLAPAMMGNTTIWKPSTTALHSNYLLMKIFQEAGLPDGVVNFLPGQGSLIGRVATANEHLAGFHFTGSTATFNTLWKSIAGNIDRYRGYPRIVGETGGKNFVMVHPSAEACEVATALVRGAFEYQGQKCSAASRAYIPRSLWPSVKEVMGDMLDSIKMGDVMEFDNFVNAVIDEASFDNIMNYLAAAKRDSDAKIIFGGEGDKSVGYFIRPTVIETTNPHYATMTDELFGPVLTVYVYEDKDFADTLRLCDSTGRYGLTGSIFSRDRYAIEQALDALRFSAGNFYINDKPTGAVVGQQPFGGARASGTNDKAGGPLNLMRWCNPRTVKETFVPPTDYPYPFLAKD","1349294 1347666","TIGR ID: PG1269","probable delta-1-pyrroline-5-carboxylate dehydrogenase","Cytoplasm, Periplasm","Numerous significant hits in gapped BLAST; e.g. residues 10-543 are 51% similar to pir||A72673 probable delta-1-pyrroline-5-carboxylate dehydrogenase of Aeropyrum pernix (strain K1), residues 11-543 are 50% similar to pir||C70877 probable pyrroline-5-carboxylate dehydrogenase of Mycobacterium tuberculosis (strain H37RV), residues 5-540 are 46% similar to ref|NP_003739.1| aldehyde dehydrogenase 4 (glutamate gamma-semialdehyde dehydrogenase; pyrroline-5-carboxylate dehydrogenase); Aldehyde dehydrogenase-4 (delta-1-pyrroline5-carboxylate dehydrogenase) of Homo sapiens.","
InterPro
IPR002086
Domain
Aldehyde dehydrogenase
PF00171\"[52-525]TAldedh
PS00070\"[320-331]?ALDEHYDE_DEHYDR_CYS
PS00687\"[292-299]?ALDEHYDE_DEHYDR_GLU
InterPro
IPR005931
Family
delta-1-pyrroline-5-carboxylate dehydrogenase 1
TIGR01236\"[12-541]TD1pyr5carbox1
InterPro
IPR012303
Family
NAD-dependent aldehyde dehydrogenase
PIRSF000147\"[58-533]TDHA
InterPro
IPR015590
Domain
Aldehyde Dehydrogenase_
PTHR11699\"[86-538]TAldehyde_dehyd
noIPR
unintegrated
unintegrated
G3DSA:3.40.605.10\"[6-331]TG3DSA:3.40.605.10
PTHR11699:SF18\"[86-538]TPTHR11699:SF18
SSF53720\"[6-529]TSSF53720


","BeTs to 9 clades of COG1012COG name: NAD-dependent aldehyde dehydrogenasesFunctional Class: CThe phylogenetic pattern of COG1012 is -mt-Yq-CEBR-uj-------Number of proteins in this genome belonging to this COG is 2","***** IPB002086 (Aldehyde dehydrogenase family) with a combined E-value of 6.5e-46. IPB002086A 179-192 IPB002086B 230-245 IPB002086C 299-341 IPB002086D 404-453 IPB002086E 487-511","Residues 185-243 are 69% similar to a (DEHYDROGENASE OXIDOREDUCTASE ALDEHYDE NAD PROTEIN ALDH) protein domain (PD000219) which is seen in PUT2_YEAST.Residues 98-183 are 56% similar to a (DEHYDROGENASE DELTA-1-PYRROLINE-5-CARBOXYLATE PRECURSOR) protein domain (PD012450) which is seen in O74766_SCHPO.Residues 429-525 are 60% similar to a (DEHYDROGENASE OXIDOREDUCTASE ALDEHYDE NAD PROTEIN ALDH) protein domain (PD000187) which is seen in PUT2_HUMAN.Residues 11-96 are 39% similar to a (DELTA-1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE) protein domain (PD066477) which is seen in O50443_MYCTU.Residues 359-450 are 33% similar to a (DELTA-1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE) protein domain (PD069558) which is seen in O50443_MYCTU.Residues 181-472 are 24% similar to a (POTENTIAL ALDEHYDE DEHYDROGENASE EC) protein domain (PD144799) which is seen in Q40255_LINUS.Residues 369-427 are 42% similar to a (DEHYDROGENASE OXIDOREDUCTASE ALDEHYDE NAD PROTEIN ALDH) protein domain (PD000263) which is seen in PUT2_YEAST.Residues 258-358 are 55% similar to a (DEHYDROGENASE OXIDOREDUCTASE ALDEHYDE NAD PROTEIN ALDH) protein domain (PD000218) which is seen in O50443_MYCTU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Fri Feb 23 12:20:06 MST 2001","Tue Feb 20 15:27:00 MST 2001","Tue Feb 20 15:27:00 MST 2001","Tue Feb 20 15:27:00 MST 2001","Tue Feb 20 15:27:00 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","-51% similar to PDB:1UZB 1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE (E_value = 1.3E_56);-51% similar to PDB:2BHP CRYSTAL ANALYSIS OF 1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE FROM THERMUS WITH BOUND NAD. (E_value = 4.9E_56);-51% similar to PDB:2BHQ CRYSTAL ANALYSIS OF 1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE FROM THERMUS WITH BOUND PRODUCT GLUTAMATE. (E_value = 4.9E_56);-51% similar to PDB:2BJA CRYSTAL ANALYSIS OF 1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE FROM THERMUS WITH BOUND NADH (E_value = 4.9E_56);-51% similar to PDB:2BJK CRYSTAL ANALYSIS OF 1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE FROM THERMUS WITH BOUND NAD AND CITRATE. (E_value = 4.9E_56);","","","Residues 50 to 529 (E-value = 1.6e-108) place PG1120 in the Aldedh family which is described as Aldehyde dehydrogenase family (PF00171)","Tue Feb 20 15:27:00 MST 2001","34540973","","","","","","1","","","PG1269" "PG1121","1350300","1349374","927","ATGGCTCTTATTCGCAAGCAGGCCACGAACCGGGTGCTGATGGTGCGCCCGGCTCTTTTTGGATTTAATGCCGAAACGGCCAGAAACAACAGCTTCCAGAAAGAAACGGGAGTACCCGAAGCAGTAGCAAGGGAAGCGAAAAAAGAGTTTGACAACTACGTCAATCTATTGCGCGAATACGGGGTAGATGTATGGGTCATTCAGGATTCGAAGACACCTCATACACCGGATTCGATATTCCCGAACAATTGGTTCAGCACGCATGTCACAGGCGAATTGGTGCTTTATCCCATGTATGCACCTAACAGGCAGCAAGAGCGGAAATTGCCCGTACTGGCTACTGTTGGTGAAATGGAAGGGGTGGATCGTATCATCAATCTCTCCGGCTACGAGCGGGACAATTGTTTTCTCGAAGGCACGGGCAGTATGGTATTGGACAGGGTCAATCGTATAGCTTACTGCTGCTCTTCCGAACGTACCAATCCGAAGGTATTAGAGGAATTTTGTCGGGAATTGGACTACAAAGGATTGATTTTTACCGCCACAGATGCGAATGGTGCTCCCATCTATCATACCAATGTGATGATGTGTGTGGCTTCGCGCTATGCGATCGTTTGTTTGGAGTGCATCAGGGACGAAGCCGAGCGCAGTATGGTGGTGAATAGCCTGACCGCTAACGGACACCGCATCATAGCCATTAGTACGGAGCAGGTGGAGCACTTCGCGGGCAATATGCTCGAAGTGGAGAGTGAGACAGGTCAATCCTTGTTGGTGATGAGTGCCGAGGCTCGCCGTTCCTTGACGAAAGAGCAGGTAGCCGAAATAGAAGGGTTCAGTACGATCATAGCTCCGGAACTGACCACGATAGAAAAGAATGGCGGTGGCTCGGCTCGCTGTATGCTGGCAGAGATATTCCTGCCTCAGGGA","5.00","-9.15","34520","MALIRKQATNRVLMVRPALFGFNAETARNNSFQKETGVPEAVAREAKKEFDNYVNLLREYGVDVWVIQDSKTPHTPDSIFPNNWFSTHVTGELVLYPMYAPNRQQERKLPVLATVGEMEGVDRIINLSGYERDNCFLEGTGSMVLDRVNRIAYCCSSERTNPKVLEEFCRELDYKGLIFTATDANGAPIYHTNVMMCVASRYAIVCLECIRDEAERSMVVNSLTANGHRIIAISTEQVEHFAGNMLEVESETGQSLLVMSAEARRSLTKEQVAEIEGFSTIIAPELTTIEKNGGGSARCMLAEIFLPQG","1350300 1349374","TIGR ID: PG1270","conserved hypothetical protein","Cytoplasm","A single hit in gapped BLAST to a hypothetical protein from V.cholerae, gb|AAF96890.1. Residues 7-308 are 41% similar to this protein.","
InterPro
IPR003198
Domain
Amidinotransferase
PF02274\"[8-306]TAmidinotransf
InterPro
IPR014541
Family
Predicted amidinotransferase, FN0238 type
PIRSF028188\"[1-309]TAmdntrnsf_FN0238
noIPR
unintegrated
unintegrated
G3DSA:3.75.10.10\"[7-304]TG3DSA:3.75.10.10
SSF55909\"[7-300]TSSF55909


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Feb 20 14:49:43 MST 2001","Tue Feb 20 14:49:43 MST 2001","Tue Feb 20 14:49:43 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","PG1121 is similar to PG0098, a conserved hypothetical protein. Residues 46-305 are 46% similar to residues 2-265 of PG0098.","Mon Jun 4 12:58:36 MDT 2001","Mon Jun 4 12:58:36 MDT 2001","-44% similar to PDB:1WXD Crystal Structure of Shikimate 5-Dehydrogenase (AroE) from Thermus Thermophilus HB8 (E_value = );-44% similar to PDB:2CY0 Crystal Structure of Shikimate 5-Dehydrogenase (AroE) from Thermus Thermophilus HB8 in complex with NADP (E_value = );-44% similar to PDB:2D5C Crystal Structure of Shikimate 5-Dehydrogenase (AroE) from Thermus Thermophilus HB8 in complex with shikimate (E_value = );-44% similar to PDB:2EV9 Crystal Structure of Shikimate 5-Dehydrogenase (AroE) from Thermus Thermophilus HB8 in complex with NADP(H) and shikimate (E_value = );","","","Residues 4 to 306 (E-value = 8.4e-05) place PG1121 in the Amidinotransf family which is described as Amidinotransferase (PF02274)","Mon Jun 4 12:58:36 MDT 2001","34540974","","","","","","1","","","PG1270" "PG1122","1351536","1350310","1227","ATGGTTTTGTCAGAAAAAGCAAAGTATTATGTTGATCTTGAGCATCGCTACGGTGCTCACAACTATCATCCGCTCGAGGTGGTACTCTCTCGTGGTCAGGGAGCTTATGTGTGGGATGTGGATGGGAAGCGTTATTTCGACTTCCTTTCTGCTTATAGTGCCGTCAATCAGGGGCATTGCCATCCGAAAATCATAGCAGCACTGAAGGAGCAGGCGGAAAAAATCTGTCTGACTTCACGGGCTTTCTACAACGATTGTTTGGGTGAATACGAAGAGTTTATGCACCATTATTTCGGCTACGATAAGATGTTGCCGATGAATTCGGGTGCGGAGGCTGTGGAGACAGCTTTGAAACTCTCTCGTCGTTGGGGTTATCGTGTGAAAGGAATACCCGAAGAGAAGGCTGTCATCATCGTATGCGACGGCAACTTCCATGGCCGCACCATCAGTATCGTTTCCATGAGTTCCGATCCCGACAGCTATACCGATTATGGCCCTTATACGCCGGGCTTCGTCAATATACCTTATAATAATATAGAAGCTTTGGAGAAGGCATTGGAGGAACACAAAGACCATGTAGCTGCTTTTGTCGTGGAGCCGATACAGGGTGAAGCCGGTGTCTTTGTTCCCGATGATGGTTATATCCGTCGTGCTGCAGAGCTTTGCCGCAAGTACCATGCCCTCTTTGTGGCTGATGAAGTGCAGACCGGTATCGCACGAACGGGACGGATGCTCTGCTGCGATCATGATGACGTTCGTCCCGATATTGTTGTGCTCGGTAAAGCTATTTCCGGCGGGGTATTGCCGGTAAGTTGCGTATTGGCAGACGATGAGGTTATGCTTACGATCAAGCCGGGCGAGCATGGTTCCACTTTCGGGGGATTCCCCCTTGCCTGCAAAGTGGCGATGGCTGCCCTTACGGTGGTAAAAGAAGAACGCTTGCCGGAGAGAGCCGAGGAGCTGGGGCAGTATTTCAGAGGAGAGTTGCTCAAAATCAAGAGCCCTCTATTGAAGTTGGTCCGCGGACGAGGTATGCTCAATGCTATTGTCATCGAACCGCACAATAGACACGAGGCATGGGACGTGTGCGAGGCAATGGCCGAACGCGGCCTTCTGGCCAAACCGACGCATCGCCATATCATTCGCTTGGCTCCGCCACTTTGTATCACACGTGAGGAGCTGGCGCAAGCCGTGGAGATTATCAAGGAATCCATCAAGGTTTTAGAG","6.30","-7.39","45763","MVLSEKAKYYVDLEHRYGAHNYHPLEVVLSRGQGAYVWDVDGKRYFDFLSAYSAVNQGHCHPKIIAALKEQAEKICLTSRAFYNDCLGEYEEFMHHYFGYDKMLPMNSGAEAVETALKLSRRWGYRVKGIPEEKAVIIVCDGNFHGRTISIVSMSSDPDSYTDYGPYTPGFVNIPYNNIEALEKALEEHKDHVAAFVVEPIQGEAGVFVPDDGYIRRAAELCRKYHALFVADEVQTGIARTGRMLCCDHDDVRPDIVVLGKAISGGVLPVSCVLADDEVMLTIKPGEHGSTFGGFPLACKVAMAALTVVKEERLPERAEELGQYFRGELLKIKSPLLKLVRGRGMLNAIVIEPHNRHEAWDVCEAMAERGLLAKPTHRHIIRLAPPLCITREELAQAVEIIKESIKVLE","1351581 1350310","TIGR ID: PG1271","ornithine aminotransferase (glutamate-1-semialdehyde 2,1-aminomutase)","Cytoplasm","This sequence is orthologous to CT210.Numerous significant hits to ornithine aminotransferase proteins in gapped BLAST; e.g. residues 7-405 are 62% similar to gb|AAG12164.1| ornithine aminotransferase of Xenopus laevis, residues 7-405 are 60% similar to emb|CAA46049.1| ornithine--oxo-acid aminotransferase of Mus musculus, residues 14-405 are 60% similar to gb|AAA59957.1| ornithine aminotransferase of Homo sapiens.","
InterPro
IPR005814
Family
Aminotransferase class-III
PTHR11986\"[16-408]TAminotrans_3
PF00202\"[28-353]TAminotran_3
PS00600\"[229-266]TAA_TRANSFER_CLASS_3
InterPro
IPR010164
Family
Ornithine aminotransferase
PTHR11986:SF18\"[16-408]TOrn_aminotrans
TIGR01885\"[4-405]TOrn_aminotrans
InterPro
IPR015421
Domain
Pyridoxal phosphate-dependent transferase, major region, subdomain 1
G3DSA:3.40.640.10\"[61-312]TPyrdxlP-dep_Trfase_major_sub1
InterPro
IPR015424
Domain
Pyridoxal phosphate-dependent transferase, major region
SSF53383\"[3-408]TPyrdxlP-dep_Trfase_major


","BeTs to 11 clades of COG0160COG name: PLP-dependent aminotransferasesFunctional Class: EThe phylogenetic pattern of COG0160 is AmtKYqvcEBRh---------Number of proteins in this genome belonging to this COG is 1","***** IPB000954 (Aminotransferase class-III pyridoxal-phosphate) with a combined E-value of 9e-68. IPB000954A 34-68 IPB000954B 103-121 IPB000954C 203-242 IPB000954D 254-266 IPB000954E 288-307","Residues 340-400 are 66% similar to a (AMINOTRANSFERASE TRANSFERASE PYRIDOXAL PHOSPHATE) protein domain (PD001337) which is seen in OAT_EMENI.Residues 286-333 are 52% similar to a (AMINOTRANSFERASE TRANSFERASE PYRIDOXAL PHOSPHATE) protein domain (PD000519) which is seen in YKAB_BACFI.Residues 230-279 are 44% similar to a (AMINOTRANSFERASE TRANSFERASE PYRIDOXAL PHOSPHATE) protein domain (PD000465) which is seen in BIOA_BACSU.Residues 65-326 are 61% similar to a (PYRIDOXAL PHOSPHATE AMINOTRANSFERASE TRANSFERASE PROTEIN) protein domain (PD000087) which is seen in OAT_RAT.Residues 21-58 are 78% similar to a (AMINOTRANSFERASE PYRIDOXAL PHOSPHATE TRANSFERASE) protein domain (PD000493) which is seen in OAT_DROAN.Residues 14-58 are 60% similar to a (ORNITHINE AMINOTRANSFERASE EC 2.6.1.13) protein domain (PD082181) which is seen in OAT_VIGAC.Residues 59-219 are 38% similar to a (HYPOTHETICAL 22.7 KD PROTEIN) protein domain (PD082173) which is seen in P71890_MYCTU.","","Thu Jun 14 11:24:36 MDT 2001","","Thu Jun 14 11:24:36 MDT 2001","Thu Jun 14 11:24:36 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:24:36 MDT 2001","Thu Jun 14 11:24:36 MDT 2001","","","Fri Feb 23 12:30:24 MST 2001","Fri Jun 22 16:13:46 MDT 2001","Tue Feb 20 16:05:02 MST 2001","Fri Jun 22 16:13:46 MDT 2001","Fri Jun 22 16:13:46 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 24-394 are 27% similar to PG1818, a predicted adenosylmethionine-8-amino-7-oxononanoate aminotransferase. ","Fri Jun 22 16:13:46 MDT 2001","Fri Feb 23 12:30:24 MST 2001","-79% similar to PDB:1GBN HUMAN ORNITHINE AMINOTRANSFERASE COMPLEXED WITH THE NEUROTOXIN GABACULINE (E_value = 1.4E_142);-79% similar to PDB:1OAT ORNITHINE AMINOTRANSFERASE (E_value = 1.4E_142);-79% similar to PDB:2CAN HUMAN ORNITHINE AMINOTRANSFERASE COMPLEXED WITH L-CANALINE (E_value = 1.4E_142);-79% similar to PDB:2OAT ORNITHINE AMINOTRANSFERASE COMPLEXED WITH 5-FLUOROMETHYLORNITHINE (E_value = 1.4E_142);-78% similar to PDB:2BYJ ORNITHINE AMINOTRANSFERASE MUTANT Y85I (E_value = 1.2E_141);","","","Residues 16 to 409 (E-value = 7.9e-171) place PG1122 in the Aminotran_3 family which is described as Aminotransferase class-III (PF00202)","Fri Jun 22 16:13:46 MDT 2001","34540975","","","Manenti,G., Gariboldi,M., Pierotti,M.A., Della Porta,G. andDragani,T.A. Elevated ornithine amino transferase expression in transplanted murine hepatocellular tumors. Unpublished.","","Thu Mar 15 08:55:13 MST 2001","1","","","PG1271" "PG1123","1351986","1352549","564","ATGGCTACAACGGCAGACTTTCGCAACGGCATGTGTCTCGAAATTGAGGGACAGTACTACTTCATCGTCGAATTCCTTCACGTCAAGCCCGGCAAAGGCCCGGCTTTCGTCCGCACCAAACTCAAGAACGTGACTACAGGACGTATCCTCGATAAGACCTGGAACAGCGGCGTCAAGGTCGAAGAGGTCAGAATAGAACGACGCCCCTATCAGTACCTCTATCAGGACGAGATGGGATACAACTTCATGCACCCCGAAACGTTCGAGCAGATCACCATACCGGGTGCAAGCATCGACGGCGTCCAGTTCCTCAAAGACGGCGATATGGTAGAAGTCATGGTACATGCCACCAGCGAAACGGTACTCACCTGCGAACTGCCTCCGCACGTTAAGCTGCGTGTGACCTACACCGAGCCGGGACTCAAAGGCGACACCGCCACCAACACCTTGAAGCCGGCGACTGTGGAGACGGGAGCTGAAGTACGCGTACCGCTCTTCATTCAGGAGGGAGAACTCATCGAAGTGGATACTCGAGACGGTTCCTACATCGGCAGAGTAAAGGAA","5.10","-6.12","21222","MATTADFRNGMCLEIEGQYYFIVEFLHVKPGKGPAFVRTKLKNVTTGRILDKTWNSGVKVEEVRIERRPYQYLYQDEMGYNFMHPETFEQITIPGASIDGVQFLKDGDMVEVMVHATSETVLTCELPPHVKLRVTYTEPGLKGDTATNTLKPATVETGAEVRVPLFIQEGELIEVDTRDGSYIGRVKE","1351986 1352549","TIGR ID: PG1274","elongation factor P","Cytoplasm","Numerous significant hits in gapped BLAST to elongation factor P protein; e.g. residues 1-187 are 59% similar to (U75509) elongation factor P homolog, EF-P of Bacteroides fragilis, residues 1-186 are 52% similar to [gi:2494274] elongation factor P (EF-P) of Mycobacterium tuberculosis, residues 1-186 are 54% similar to (X99289) elongation factor P of Corynebacterium glutamicum. ","
InterPro
IPR001059
Domain
Translation elongation factor P/YeiP, central
PF01132\"[67-122]TEFP
InterPro
IPR008991
Domain
Translation protein SH3-like
SSF50104\"[1-63]TTransl_SH3_like
InterPro
IPR011768
Family
Translation elongation factor P
PIRSF005901\"[1-187]TEF-P
TIGR00038\"[1-188]Tefp
InterPro
IPR012340
Domain
Nucleic acid-binding, OB-fold
G3DSA:2.40.50.140\"[64-128]T\"[129-186]TOB_NA_bd_sub
InterPro
IPR013185
Domain
Translation elongation factor, KOW-like
PF08207\"[3-60]TEFP_N
InterPro
IPR013852
Domain
Translation elongation factor P/YeiP, C-terminal
PS01275\"[151-170]TEFP
InterPro
IPR014722
Domain
Translation protein SH3-like, subgroup
G3DSA:2.30.30.30\"[1-63]TRibosomal_L2
InterPro
IPR015365
Domain
Elongation factor P, C-terminal
PF09285\"[130-185]TElong-fact-P_C
noIPR
unintegrated
unintegrated
SSF50249\"[64-128]T\"[129-186]TNucleic_acid_OB


","BeTs to 12 clades of COG0231COG name: Translation elongation factor P/translation initiation factor eIF5-aFunctional Class: JThe phylogenetic pattern of COG0231 is amtkYqvcEbrhujgpolINxNumber of proteins in this genome belonging to this COG is 2","***** IPB001059 (Elongation factor P (EF-P)) with a combined E-value of 2.4e-67. IPB001059A 22-58 IPB001059B 71-90 IPB001059C 137-185","Residues 1-186 are 59% similar to a (FACTOR PROTEIN BIOSYNTHESIS INITIATION) protein domain (PD002832) which is seen in EFP_BACFR.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Jan 2 11:49:12 2001","Tue Jan 2 11:50:11 2001","Tue Jan 2 11:49:12 2001","Thu Feb 22 19:16:20 MST 2001","Thu Feb 22 19:16:20 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1123 is essentially identical to PG0512, elongation factor P.","Mon Jun 4 13:01:05 MDT 2001","Thu Mar 15 09:00:54 MST 2001","-68% similar to PDB:1YBY Conserved hypothetical protein Cth-95 from Clostridium thermocellum (E_value = 1.3E_47);-61% similar to PDB:1UEB Crystal structure of translation elongation factor P from Thermus thermophilus HB8 (E_value = 1.5E_35);-40% similar to PDB:1U9C Crystallographic structure of APC35852 (E_value = 1.5E_35);-44% similar to PDB:2O14 X-Ray structure of the hypothetical protein YXIM_BACsu from Bacillus subtilis. Northeast Structural Genomics Consortium target SR595 (E_value = 1.5E_35);-49% similar to PDB:1U89 Solution structure of VBS2 fragment of talin (E_value = 1.5E_35);","","","Residues 1 to 186 (E-value = 2.7e-103) place PG1123 in the EFP family which is described as Elongation factor P (EF-P) (PF01132)","Thu Mar 15 09:00:54 MST 2001","34540977","","","Abratt,V.R., Mbewe,M. and Woods,D.R. 1998. Cloning of an EF-P homologue from Bacteroides fragilis that increases B. fragilis glutamine synthetase activity in Escherichia coli. Mol. Gen. Genet. 258 (4): 363-372. PubMed: 9648740.","","Thu Mar 15 09:00:54 MST 2001","1","","","PG1274" "PG1124","1353088","1353591","504","ATGTTATTCTTCAAAAGAAGACAATCCTGTATTGCCCACAAGGCAACAGGCAAGAAGCTGTGGTATCCGCAGACAGTCATCAACGGCAGCATTGCCTCCACCCTGCACATCGCAGAACAAATCTCAGAACTTTCGGGAGCCAGCCCGGGCGATGTATTCGGTATCCTGCGCGATTTGGGCATCGTCATGCGCAGGGAATTGGCTTCGGGCAAGAAGATCAAGCTCGACGGCATCGGTTGTTTCCGTCTCATTGCACAGGCCAAAGGATCGGGAGTGGAGAAGAAAGAGGATGTGAAAGCCTCCCAGTTCAACTCCGTTCGGGTCAATTTCAGGGCAGAGTGTCGTTACAATACGGTCACTCGCGAACGGGATTGTACGCTGATCGCTCCGGATCTGAAGTTCGCCGAGTACGGCAAGCCGCTTCCGGCAGGTGCTTCTGCCAATGCAGGCGATAGCAATTCTCAAACCGGTGGTGGCGATCAGGGATCAGGAGGAGGAGGGCTC","10.20","8.28","17891","MLFFKRRQSCIAHKATGKKLWYPQTVINGSIASTLHIAEQISELSGASPGDVFGILRDLGIVMRRELASGKKIKLDGIGCFRLIAQAKGSGVEKKEDVKASQFNSVRVNFRAECRYNTVTRERDCTLIAPDLKFAEYGKPLPAGASANAGDSNSQTGGGDQGSGGGGL","1353088 1353591","TIGR ID: PG1276","conserved hypothetical protein","Extracellular","One significant hit in gapped BLAST; e.g. residues 2-113 are 36% similar to gb|AAG26483.1|AF285774_23 unknown of Bacteroides fragilis.","
InterPro
IPR005902
Family
Putative DNA-binding protein, HU-related
TIGR01201\"[1-168]THU_rel
InterPro
IPR010992
Family
IHF-like DNA-binding
SSF47729\"[31-126]TIHF_like_DNA_bnd


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Feb 20 16:36:43 MST 2001","Tue Feb 20 16:36:43 MST 2001","Tue Feb 20 16:36:43 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","PG1124 is identical to PG0511, a conserved hypothetical protein. Similarities are also seen to PG0502, PG0200, PG1781, PG1221, all conserved hypothetical proteins or hypothetical proteins.","Mon Jun 4 13:03:29 MDT 2001","Mon Jun 4 13:03:29 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jun 4 13:03:29 MDT 2001","34540978","","","","","","1","","","PG1276" "PG1125","1353897","1355159","1263","ATGAATAACATTAGGATTGCTATCATCGGTTTGGGATATGTGGGTCTCCCTTTAGCTCGTCTGTTTTCCACAAAATTTCCGACAATCGGCTTCGACATCAACCCGAACCGTGTAGAAGAACTAATGTCAGGATATGACAGCACAGGGGAAATTGGAAATGAATTATTACAGGAAGCCTTGCAAAAGGGGTTACTTTGTACAACAAAAATTGAAGAAATTAGGGATTGTAACTTCTATATCGTGACAGTTCCTACCCCCATAGATCACAATCACACCCCGGACTTACGGCCACTTTTGGCAGCCAGCGAAACAATTGGAAAGGTAATCGGCCAAGGAGATGTGGTGGTGTACGAAAGTACGGTGTATCCCGGTGTAACAGAAGACGAATGTATTCCGATTATCGAGAAAGTTTCGGGTCTCAAATACAATGTGGACTTCTTTGCCGGATACAGTCCCGAACGAATCAATCCGGGAGATAAAGTTCACACAGTAGAGAATATAAAAAAAGTGACATCCGGTTCTACTCCGGAAATAGCCGACTATGTGGATAGAATGTATAATACCGTGTTGGTCAATGGCACACACAAAGCATCTTCCATAAAAGTTGCAGAGGCTTCAAAAATCATAGAAAACGCCCAACGAGATGTAAACATTGCATTTATGAACGAAATCGCGAAGATTTTCAATGCAATGGACATTGATACGCACGAAGTATTGGAGGCTGCAGCTACAAAATGGAACTTCCTACCTTTTCAGCCGGGCTTGGTCGGTGGGCATTGTATAGGGGTAGACCCCTATTATCTTATTCAGCGAGCACAGGTATATGGAGTTTATCCTCGGGTATTGATGTCTGCGAGAAGGCTGAATGACAGCATGGGCTCCTATATAGCCTCGCAAACCATCAAGCAAATGAATAAAGCAGGCATCATGGTGAAAGATGCACGAATTCTGATTTTAGGATTTACATTCAAAGAGAATTGTCCGGATATCCGTAATACCAAAGTGATAGACACGTACAGCACCCTGCAAGAATACACGAAAAATATTATAGTACACGATCCTTGGGCAAATCCTTCTATCGCTGAGCAAGTATATGGAATAAAGATTCACAATGAATTCCCTAAAGGAAAATTCGATGCCATTATTATTGCTGTAGCGCATAGAGATTTTTCGAATATCGATCTCGAAAAATCATCCACAGCCAACACCATTATCTACGATGTGAAGGGCATTCTACCCCAAGGGAAAAAGTGTCACAAACTG","6.40","-3.85","46808","MNNIRIAIIGLGYVGLPLARLFSTKFPTIGFDINPNRVEELMSGYDSTGEIGNELLQEALQKGLLCTTKIEEIRDCNFYIVTVPTPIDHNHTPDLRPLLAASETIGKVIGQGDVVVYESTVYPGVTEDECIPIIEKVSGLKYNVDFFAGYSPERINPGDKVHTVENIKKVTSGSTPEIADYVDRMYNTVLVNGTHKASSIKVAEASKIIENAQRDVNIAFMNEIAKIFNAMDIDTHEVLEAAATKWNFLPFQPGLVGGHCIGVDPYYLIQRAQVYGVYPRVLMSARRLNDSMGSYIASQTIKQMNKAGIMVKDARILILGFTFKENCPDIRNTKVIDTYSTLQEYTKNIIVHDPWANPSIAEQVYGIKIHNEFPKGKFDAIIIAVAHRDFSNIDLEKSSTANTIIYDVKGILPQGKKCHKL","1353705 1355159","TIGR ID: PG1277","UDP-glucose 6-dehydrogenase","Cytoplasm","Numerous hits in gapped BLAST to polysaccharide and lipopolysaccharide biosynthesis proteins, e.g. residues 1-412 are 65% similar to the putative UDP-glucose-6 dehydrogenase from Bacteroides fragilis (gb|AAD40718.1|). Residues 3-412 are 60% similar to ORF1S of Shigella sonnei (AB028135).","
InterPro
IPR001100
Family
Pyridine nucleotide-disulphide oxidoreductase, class I
PR00411\"[5-30]T\"[255-270]TPNDRDTASEI
InterPro
IPR001732
Domain
UDP-glucose/GDP-mannose dehydrogenase, N-terminal
PF03721\"[4-191]TUDPG_MGDP_dh_N
InterPro
IPR008927
Domain
6-phosphogluconate dehydrogenase, C-terminal-like
SSF48179\"[200-292]T6DGDH_C_like
InterPro
IPR014026
Domain
UDP-glucose/GDP-mannose dehydrogenase, dimerisation
PF00984\"[200-294]TUDPG_MGDP_dh
InterPro
IPR014027
Domain
UDP-glucose/GDP-mannose dehydrogenase, C-terminal
PF03720\"[317-414]TUDPG_MGDP_dh_C
InterPro
IPR014028
Domain
UDP-glucose/GDP-mannose dehydrogenase, dimerisation and substrate-binding
PTHR11374\"[170-414]TUDPG_MGDP_DH_Creg
InterPro
IPR014360
Family
UDP-glucose/GDP-mannose dehydrogenase
PIRSF000124\"[4-413]TUDPglc_GDPman_dh
InterPro
IPR014687
Family
UDP-N-acetyl-D-mannosaminuronate dehydrogenase
PIRSF500136\"[4-421]TUDP_ManNAc_DH
noIPR
unintegrated
unintegrated
G3DSA:1.10.8.220\"[200-285]TG3DSA:1.10.8.220
G3DSA:3.40.50.1870\"[298-412]TG3DSA:3.40.50.1870
G3DSA:3.40.50.720\"[4-197]TG3DSA:3.40.50.720
PTHR11374:SF5\"[170-414]TPTHR11374:SF5
SSF51735\"[4-206]TSSF51735
SSF52413\"[301-414]TSSF52413


","BeTs to 4 clades of COG0677COG name: UDP-N-acetyl-D-mannosaminuronate dehydrogenaseFunctional Class: MThe phylogenetic pattern of COG0677 is -mtK----e------------Number of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","Residues 260-390 are 52% similar to a (DEHYDROGENASE OXIDOREDUCTASE NAD UDP-GLUCOSE) protein domain (PD001281) which is seen in Q55042_SHISO.Residues 170-259 are 65% similar to a (DEHYDROGENASE OXIDOREDUCTASE NAD UDP-GLUCOSE) protein domain (PD001282) which is seen in CAPL_STAAU.Residues 6-138 are 51% similar to a (DEHYDROGENASE OXIDOREDUCTASE NAD UDP-GLUCOSE) protein domain (PD001278) which is seen in CAPL_STAAU.Residues 128-174 are 76% similar to a (PROTEIN FORM I OPERON) protein domain (PD190504) which is seen in Q55042_SHISO.","","Thu Jun 14 11:24:58 MDT 2001","","Thu Jun 14 11:24:58 MDT 2001","Thu Jun 14 11:24:58 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:24:58 MDT 2001","Thu Jun 14 11:24:58 MDT 2001","","","Mon Jun 4 13:06:21 MDT 2001","Fri Jun 22 16:17:41 MDT 2001","Fri Feb 23 12:39:02 MST 2001","","Fri Jun 22 16:17:41 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1125 (from residue 5 to 333) is 32% similar to PG0094, UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase. PG1125 is also 25% similar to PG1026, UDP-glucose dehydrogenase, from residue 3-381.","Fri Jun 22 16:17:41 MDT 2001","Fri Feb 23 12:39:02 MST 2001","-43% similar to PDB:1MFZ Partially refined 2.8 A Crystal structure of GDP-mannose dehydrogenase from P. aeruginosa (E_value = 7.6E_22);-43% similar to PDB:1MUU 2.0 A crystal structure of GDP-mannose dehydrogenase (E_value = 7.6E_22);-43% similar to PDB:1MV8 1.55 A crystal structure of a ternary complex of GDP-mannose dehydrogenase from Psuedomonas aeruginosa (E_value = 7.6E_22);-42% similar to PDB:2O3J Structure of Caenorhabditis Elegans UDP-Glucose Dehydrogenase (E_value = 1.5E_14);","","","Residues 4 to 191 (E-value = 6.7e-64) place PG1125 in the UDPG_MGDP_dh_N family which is described as UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain (PF03721)Residues 200 to 294 (E-value = 4.6e-40) place PG1125 in the UDPG_MGDP_dh family which is described as UDP-glucose/GDP-mannose dehydrogenase family, central domain (PF00984)Residues 317 to 414 (E-value = 1.3e-13) place PG1125 in the UDPG_MGDP_dh_C family which is described as UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain (PF03720)","Fri Jun 22 16:17:41 MDT 2001","34540979","","","Comstock,L.E., Coyne,M.J., Tzianabos,A.O., Pantosti,A., Onderdonk,A.B. and Kasper,D.L. 1999. Analysis of a capsular polysaccharide biosynthesis locus of Bacteroides fragilis. Infect. Immun. 67 (7): 3525-3532. PubMed: 10377135.","","Fri Mar 23 14:02:55 MST 2001","1","","","PG1277" "PG1126","1355495","1356574","1080","ATGAAGAAGCACAATTTCACCGCAGGACCCTGTATCCTCAATGACTTAGTTTTGAAAGATGCTGCATCAGCATGTCTCAATTTTGCAGGAACGGGTCTTTCTGTTCTTGAAGTTTCTCACCGCGACAAAGAGTTCGATGCTGTAATGCTCGAAGCTCGCAATCTCTTCAAAGAACTTCTTGATGTGCCCGAAGGCTATGAAGTACTTTTCCTCGGTGGTGGCGCCAGCCTCCAATTCTACCAAGTACCGCTGAACCTGCTAAAGAAGAAAGCAGCCTTTATCAACACCGGTACATGGGCAACCAACGCCATCAAGCAGGCCAAGATCATGACGCAGGTATATGGTGGAGAAGTAGAGGTTTTGGCTTCATCTGAAGACAAGAACTTCTCATACATCCCCAAGGATTTCGTTATTCCTGAGGACGTAGATTATTTCCACTTCACGACAAACAACACGATCTACGGTACTGAAATTCGTAAGGACTTCGACACGAAGACTCGCCTTGTAGCAGACATGTCTTCCGACATTTTCTCTCGTCCGATAGACGTTTCCAAGTATGACCTCATCTACGGTGGTGCTCAGAAGAACATCGGTCCGGCCGGAGCTACTTTCGTATTGGTAAAAACGGATGTGCTCGGACAAGTAGATCGTCCTCTACCCGATATGCTGAACTATCAGATCCACATCAAGAAAGACTCTATGTTCAACACTCCTCCCGTATTCCCCGTTTATGTAGCACTCCAGACGATGAAGTGGTACAAAGAACTCGGCGGTGTGAAGGTGTTGGAAAAGATGAATCTGGACAAGGCAGCCCTTATCTACGATGCCATCGACAGCAGCAAGATCTTCCGCGGCACGGTTAATCCTGAAGACCGCTCTATCATGAACGCTTGCTTCGTGATGAAGGATGAGTACAAAGAACTGGAGAAAGAGTTCGCTACGTTTGCAGCTTCACGCGGCATGGTAGGTATCAAGGGACACCGCTCTGTAGGCGGTTTCCGCGCTTCTCTCTACAACGCATTGCCTATCGAAAGCGTACAATCTTTGGTTAGCGTAATGAAGGAATTCGAAGCTAAGCAC","6.40","-1.92","40162","MKKHNFTAGPCILNDLVLKDAASACLNFAGTGLSVLEVSHRDKEFDAVMLEARNLFKELLDVPEGYEVLFLGGGASLQFYQVPLNLLKKKAAFINTGTWATNAIKQAKIMTQVYGGEVEVLASSEDKNFSYIPKDFVIPEDVDYFHFTTNNTIYGTEIRKDFDTKTRLVADMSSDIFSRPIDVSKYDLIYGGAQKNIGPAGATFVLVKTDVLGQVDRPLPDMLNYQIHIKKDSMFNTPPVFPVYVALQTMKWYKELGGVKVLEKMNLDKAALIYDAIDSSKIFRGTVNPEDRSIMNACFVMKDEYKELEKEFATFAASRGMVGIKGHRSVGGFRASLYNALPIESVQSLVSVMKEFEAKH","1355483 1356574","TIGR ID: PG1278","phosphoserine aminotransferase (PSAT) (vegetative protein 234)","Cytoplasm, Outer membrane","Numerous significant hits to phosphoserine aminotransferase proteins in gapped BLAST; e.g. residues 5-360 are 44% similar to emb|CAB12842.1| phosphoserine aminotransferase of Bacillus subtilis, residues 2-357 are 43% similar to emb|CAA86558.1| phosphoserine aminotransferase of Bacillus circulans subsp. alkalophilus, residues 4-360 are 44% similar to gb|AAF94318.1| phosphoserine aminotransferase of Vibrio cholerae.This sequence is similar to BT1153.","
InterPro
IPR000192
Family
Aminotransferase, class V
PF00266\"[12-349]TAminotran_5
PS00595\"[186-205]TAA_TRANSFER_CLASS_5
InterPro
IPR003248
Family
Phosphoserine aminotransferase
PD001544\"[239-360]TPser_amintransf
TIGR01364\"[3-360]TserC_1
InterPro
IPR015421
Domain
Pyridoxal phosphate-dependent transferase, major region, subdomain 1
G3DSA:3.40.640.10\"[2-255]TPyrdxlP-dep_Trfase_major_sub1
InterPro
IPR015422
Domain
Pyridoxal phosphate-dependent transferase, major region, subdomain 2
G3DSA:3.90.1150.10\"[256-360]TPyrdxlP-dep_Trfase_major_sub2
InterPro
IPR015424
Domain
Pyridoxal phosphate-dependent transferase, major region
SSF53383\"[2-360]TPyrdxlP-dep_Trfase_major
noIPR
unintegrated
unintegrated
PIRSF000525\"[1-360]TSerC
PTHR21152\"[2-360]TPTHR21152
PTHR21152:SF1\"[2-360]TPTHR21152:SF1


","BeTs to 3 clades of COG1932COG name: Phosphoserine aminotransferaseFunctional Class: H,EThe phylogenetic pattern of COG1932 is ----y---eb-h---------Number of proteins in this genome belonging to this COG is 1","***** BP01544 (AMINOTRANSFERASE TRANSFERASE) with a combined E-value of 7.2e-54. BP01544A 6-18 BP01544B 39-74 BP01544C 93-113 BP01544D 150-157 BP01544E 186-201 BP01544F 235-258 BP01544G 290-302 BP01544H 324-336","Residues 5-357 are 44% similar to a (PHOSPHOSERINE AMINOTRANSFERASE PSAT) protein domain (PD001544) which is seen in SERC_BACSU.","","Thu Jun 14 11:25:23 MDT 2001","","Thu Jun 14 11:25:23 MDT 2001","Thu Jun 14 11:25:23 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:25:23 MDT 2001","Thu Jun 14 11:25:23 MDT 2001","","","Thu Mar 15 09:08:31 MST 2001","Thu Dec 4 10:48:49 2003","Tue Feb 20 16:54:53 MST 2001","Fri Jun 22 16:20:36 MDT 2001","Fri Jun 22 16:20:36 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 15 09:08:31 MST 2001","-65% similar to PDB:1BT4 PHOSPHOSERINE AMINOTRANSFERASE FROM BACILLUS CIRCULANS SUBSP. ALKALOPHILUS (E_value = 5.4E_82);-65% similar to PDB:1W3U CRYSTAL STRUCTURE OF PHOSPHOSERINE AMINOTRANSFERASE FROM BACILLUS CIRCULANS VAR. ALKALOPHILUS (E_value = 5.4E_82);-65% similar to PDB:2C0R CRYSTAL STRUCTURE OF PHOSPHOSERINE AMINOTRANSFERASE FROM BACILLUS CIRCULANS VAR. ALKALOPHILUS AT PH 8.5 (E_value = 5.4E_82);-64% similar to PDB:1W23 CRYSTAL STRUCTURE OF PHOSPHOSERINE AMINOTRANSFERASE FROM BACILLUS ALCALOPHILUS (E_value = 1.2E_81);-64% similar to PDB:2BHX RADIATION DAMAGE OF THE SCHIFF BASE IN PHOSPHOSERINE AMINOTRANSFERASE (STRUCTURE A) (E_value = 1.2E_81);","","","Residues 13 to 349 (E-value = 1.6e-22) place PG1126 in the Aminotran_5 family which is described as Aminotransferase class-V (PF00266)","Fri Jun 22 16:20:36 MDT 2001","34540980","","","Battchikova,N., Himanen,J.P., Ahjolahti,M. and Korpela,T. 1996. Phosphoserine aminotransferase from Bacillus circulans subsp.alkalophilus: purification, gene cloning and sequencing. Biochim. Biophys. Acta 1295 (2): 187-194. PubMed: 8695645.","","Tue Feb 20 16:54:53 MST 2001","1","","","PG1278" "PG1127","1356678","1357595","918","ATGACAAAAGTATTGGTAGCTACCGAAAAACCTTTTGCTAAGGTAGCCGTAGACGGAATCAAAAGAATTATCGAAGAGGCAGGTCTCGAATTTGCTTTGCTCGAAAAGTATACCGATAAGAAACAACTCCTCGATGCTGTAAAAGATGCTAACGCTATCATTATCCGCAGCGACCAAATCGATGCAGAAGTTCTCGATGCAGCTAAGGAGCTGAAAATCGTAGTACGTGCAGGTGCCGGATATGACAACGTAGATTTGGCTGCTGCTACAGCCCACAATGTGTGCGTGATGAATACGCCGGGACAAAACTCGAATGCCGTTGCCGAATTGGTAATGGGTATGCTCGTATTCATGTATCGCAATCTCTTCAACGGAGCATCCGGTTCTGAACTTATGGGCAAGAAGCTCGGTATCCTCGCATACGGCAATGTAGGCCGCAACGTGGCACGTATCGCAAAAGGCTTCGGCATGGAAATTTATGCTTACGACCAATTTGTTTCTGCAGCGGATATCGAGAAAGAAGGAGTAAAGGCCGTTGCTTCTCGCGATGCTCTGTTCGAAACCTGCGATATAGTTTCGCTTCACATCCCGAAGACCCCCGAGACTGTAAAATCAATCAATGCCGAACTCCTCTCCAAAATGCCTAAGGGTGCCTGCCTGATCAATACGGCTCGTCAAGAAGTAATCGACGAAGAGGGTATCTGCAAGTTTATGGCAGAGCGTACCGACTTCAAATATGCTACGGACATCAAGCCTACAAACGATGCTGAAATGGCAAAATTCGAAGGTCGCTACTTCACCACTCCCAAAAAGATGGGTGCTCAGACAGCAGAAGCCAACATCAATGCCGGTCTGGCTGCAGCTCGTCAAATCGTTGACTTCATCAAAAACGGCAACGAAAAATTCCGTGTAAACAAA","6.60","-0.69","33288","MTKVLVATEKPFAKVAVDGIKRIIEEAGLEFALLEKYTDKKQLLDAVKDANAIIIRSDQIDAEVLDAAKELKIVVRAGAGYDNVDLAAATAHNVCVMNTPGQNSNAVAELVMGMLVFMYRNLFNGASGSELMGKKLGILAYGNVGRNVARIAKGFGMEIYAYDQFVSAADIEKEGVKAVASRDALFETCDIVSLHIPKTPETVKSINAELLSKMPKGACLINTARQEVIDEEGICKFMAERTDFKYATDIKPTNDAEMAKFEGRYFTTPKKMGAQTAEANINAGLAAARQIVDFIKNGNEKFRVNK","1356678 1357595","TIGR ID: PG1279","D-3-phosphoglycerate dehydrogenase","Cytoplasm","Numerous significant hits to phosphoglycerate dehydrogenase proteins in gapped BLAST; e.g. residues 2-306 are 58% similar to gb|AAC28494.1| D-3-phosphoglycerate dehydrogenase of Entodinium caudatum, residues 8-276 are 35% similar to pir||T35831 probable D-3-phosphoglycerate dehydrogenase of Streptomyces coelicolor, residues 30-234 are 35% similar to gb|AAD36472.1|AE001793_2 D-3-phosphoglycerate dehydrogenase of Thermotoga maritima.This sequence is similar to BT1152.","
InterPro
IPR006139
Domain
D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region
PF00389\"[14-305]T2-Hacid_dh
InterPro
IPR006140
Domain
D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
PF02826\"[127-249]T2-Hacid_dh_C
PS00065\"[136-163]?D_2_HYDROXYACID_DH_1
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.720\"[104-250]TG3DSA:3.40.50.720
PTHR10996\"[10-305]TPTHR10996
PTHR10996:SF10\"[10-305]TPTHR10996:SF10
SSF51735\"[103-267]TSSF51735
SSF52283\"[19-140]TSSF52283


","BeTs to 12 clades of COG0111COG name: Phosphoglycerate dehydrogenaseFunctional Class: EThe phylogenetic pattern of COG0111 is amtkYqVcebrhuj-------Number of proteins in this genome belonging to this COG is 2","***** IPB002162 (D-isomer specific 2-hydroxyacid dehydrogenase) with a combined E-value of 2.2e-16. IPB002162A 60-71 IPB002162B 133-145 IPB002162C 200-251","Residues 80-262 are 38% similar to a (NAD DEHYDROGENASE OXIDOREDUCTASE PROTEIN) protein domain (PD000699) which is seen in SERA_ARATH.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Feb 21 09:01:15 MST 2001","Thu Dec 4 10:47:06 2003","Wed Feb 21 09:01:15 MST 2001","Wed Feb 21 09:01:15 MST 2001","Wed Feb 21 09:01:15 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1-305 are 27% similar to PG1898, a predicted dehydrogenase protein. Similarites are also seen to PG1060 and PG1081.","Wed Feb 21 09:01:15 MST 2001","Thu Mar 15 09:12:03 MST 2001","-56% similar to PDB:1WWK Crystal structure of phosphoglycerate dehydrogenase from Pyrococcus horikoshii OT3 (E_value = 4.0E_35);-59% similar to PDB:1YGY Crystal Structure of D-3-Phosphoglycerate dehydrogenase From Mycobacterium tuberculosis (E_value = 2.6E_34);-51% similar to PDB:2G76 Crystal structure of human 3-phosphoglycerate dehydrogenase (E_value = 6.4E_33);-49% similar to PDB:2DBQ Crystal Structure of Glyoxylate Reductase (PH0597) from Pyrococcus horikoshii OT3, Complexed with NADP (I41) (E_value = 5.2E_27);-49% similar to PDB:2DBR Crystal Structure of Glyoxylate Reductase (PH0597) from Pyrococcus horikoshii OT3, Complexed with NADP (P1) (E_value = 5.2E_27);","","","Residues 9 to 101 (E-value = 3.6e-21) place PG1127 in the 2-Hacid_dh family which is described as D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain (PF00389)Residues 107 to 270 (E-value = 1.7e-27) place PG1127 in the 2-Hacid_dh_C family which is described as D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain (PF02826)","Thu Dec 4 10:47:06 2003","34540981","","","Eschenlauer,S.C.P., McEwan,N.R., Calza,R.E., Wallace,R.J., Onodera,R. and Newbold,C.J. D-3-phosphoglycerate dehydrogenase. Unpublished.","","Thu Mar 15 09:12:03 MST 2001","1","","","PG1279" "PG1128","1357617","1358861","1245","ATGGCTATCATAAAACCATTCAAAGGAGTACGTCCTCCGAAAGAACTCGTAGAGCAAGTAGCATCTCGCCCCTACGACGTCCTTAATTCAGAAGAAGCTCGTAAAGAAGCGAAGGGCAACGAAAAGTCGCTCTATCATATTATCCGTCCGGAGATCGATTTCCCTGTAGGAAAAGATGAACACGATGCGGACGTGTATGAAAAAGCTGCCGAGAACTTCAGAATGTTCCAAGAAAAAGGCTGGCTCGTACAAGACACAAAAGAAAACTACTACGTTTATGCCCAGACCATGAATGGCAAAACGCAGTACGGCCTTGTCGTAGGTGCATATGTAGAGGACTATATGAACGGCGTGATCAAGAAGCATGAGCTGACACGCCGCGACAAGGAAGAAGACCGCATGAAGCACGTTCGTGTAAACGATGCCAACATCGAGCCTGTTTTCTTTGCTTATCCCGAAAACAAAGAACTGGACGCTATCGTCAAAAAATATGCCGCTCGTCCTGCCGAATATGATTTCGTGGCAGAATTCGACGGTTTTGGCCATCACTTCTGGGTGATCGACGAAGAAGCCGATATCAAACGTATCACGGAGCTATTCGCTGCCATGCCGGCACTCTATATCGCTGACGGTCACCACCGTTCGGCTGCTGCAGCCTTGGTGGGCGCCGAAAAAGCCAAGAATAATCCCAACCATCGTGGCGATGAAGAGTACAACTACTTCATGGCTGTATGCTTCCCTGCCGATCAGCTCACAATCATCGACTATAACCGGGTAGTGAAAGATCTGAATGGCTTGAGTGATGAAGAATTCTTGCAGAAACTGTCTCGACACTTCGAAGTAGAATGCAAAGGGACGGAAGAATATCGCCCCTCCAAGCTGCACAACTTCTCTCTCTATCTCGGTGGCAAATGGTATTCGCTGACAGCAAAAGCCGGCACCTATGATGACAACGATCCTATCGGTGTACTGGATGTTACGATCTCTTCGAATCTGATTCTGGATGAGATCTTAGGCATCAAAGATCTCCGCTCCGACAAGCGTATCGACTTCGTGGGTGGTATTCGCGGACTGGGAGAACTGAAAAAGCGTGTAGACAGTGGCGAAATGCGTGTTGCTCTCGCTCTTTATCCGGTATCGATGAAACAGCTGATGGACATTGCTGATTCGGGCAATATCATGCCTCCCAAGACTACTTGGTTCGAGCCGAAACTTCGTTCCGGTCTAATCATCCACAAACTGAGC","5.70","-9.16","47421","MAIIKPFKGVRPPKELVEQVASRPYDVLNSEEARKEAKGNEKSLYHIIRPEIDFPVGKDEHDADVYEKAAENFRMFQEKGWLVQDTKENYYVYAQTMNGKTQYGLVVGAYVEDYMNGVIKKHELTRRDKEEDRMKHVRVNDANIEPVFFAYPENKELDAIVKKYAARPAEYDFVAEFDGFGHHFWVIDEEADIKRITELFAAMPALYIADGHHRSAAAALVGAEKAKNNPNHRGDEEYNYFMAVCFPADQLTIIDYNRVVKDLNGLSDEEFLQKLSRHFEVECKGTEEYRPSKLHNFSLYLGGKWYSLTAKAGTYDDNDPIGVLDVTISSNLILDEILGIKDLRSDKRIDFVGGIRGLGELKKRVDSGEMRVALALYPVSMKQLMDIADSGNIMPPKTTWFEPKLRSGLIIHKLS","1357617 1358861","TIGR ID: PG1280","conserved hypothetical protein","Cytoplasm","Two significant hits in gapped BLAST; e.g. residues 4-412 are 41% similar to gb|AAD36577.1|AE001799_9 hypothetical protein of Thermotoga maritima, residues 4-414 are 25% similar to emb|CAB52853.1| hypothetical protein of Streptomyces coelicolor A3(2).This sequence is similar to BT1151.","
InterPro
IPR008323
Family
Uncharacterised conserved protein UCP033563
PIRSF033563\"[2-415]TUCP033563
PF06245\"[3-414]TDUF1015
InterPro
IPR010920
Domain
Like-Sm ribonucleoprotein-related, core
SSF50182\"[73-154]TSm_like_riboprot
noIPR
unintegrated
unintegrated
SSF110849\"[207-402]TSSF110849


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Feb 21 12:37:21 MST 2001","Thu Dec 4 10:45:28 2003","Wed Feb 21 12:37:21 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Dec 4 10:45:28 2003","-59% similar to PDB:1F9T CRYSTAL STRUCTURES OF KINESIN MUTANTS REVEAL A SIGNALLING PATHWAY FOR ACTIVATION OF THE MOTOR ATPASE (E_value = );-59% similar to PDB:1F9U CRYSTAL STRUCTURES OF MUTANTS REVEAL A SIGNALLING PATHWAY FOR ACTIVATION OF THE KINESIN MOTOR ATPASE (E_value = );-59% similar to PDB:1F9V CRYSTAL STRUCTURES OF MUTANTS REVEAL A SIGNALLING PATHWAY FOR ACTIVATION OF THE KINESIN MOTOR ATPASE (E_value = );-59% similar to PDB:1F9W CRYSTAL STRUCTURES OF MUTANTS REVEAL A SIGNALLING PATHWAY FOR ACTIVATION OF THE KINESIN MOTOR ATPASE (E_value = );-59% similar to PDB:3KAR THE MOTOR DOMAIN OF KINESIN-LIKE PROTEIN KAR3, A SACCHAROMYCES CEREVISIAE KINESIN-RELATED PROTEIN (E_value = );","","","Residues 3 to 414 (E-value = 6.5e-180) place PG1128 in the DUF1015 family which is described as Protein of unknown function (DUF1015) (PF06245)","Wed Feb 21 12:37:21 MST 2001","34540982","","","","","","1","","","PG1280" "PG1129","1358991","1360151","1161","TTGTGGAGTACAAATTATGAATACCACTTATTTAGAACAATGAGTACAAATAATATCACCATCGGTAGCCGTGTACGGTTTCTCAATTCACAGGGAGGAGGGATCGTCCGTCGCATCAGTGGGAGGATCGCTTGGGTGGAAGGAGAAGACGGATTCGAAATACCTACTCCGATCCAGGAATGTGTGACAGTCGGAGATAATGACACCTTTATTCCCGCCTATAAGTCGCCCATGGAAAAACGCCGAGAAGAAGAATCGAAAAAAGAAGAGCGAAACAAACGACACAAAGAAGTAGCCGTTGCTTCCGACAGAAAGCCAACATCATCCGAGGAAAAACCGCACTTGCTGCATACCGAACTGGCAGGACACGACAAACTGAATGTATATCTGGCCTATCTGCCCATGAACGAACAACGCTTGGGGACAGAGCCTTATGAATGTTTTCTGATCAACGATAGCAATTACTGTCTACAGTACAACTACCTCTCCTTAATGTCCACCGGTTGGAAGATCCGAGCTACCGGTAGCATAGATCCGAATACCAAACTGTTCATTGAGGAGTTCACTGCTGCAGATTTGCAAGATATGGAAAGGATATGTCTGCAATTAACTGCATACAAGGAACGGAAAACCTTTCTTCTGAAACCGGCCCTGTCAGTGGAATTGAGATTCGATACGATCAAATTCGTCAAACTGCATTGCTTCATAGAAAATGATTTCTTCGAAGACAAAGCTCTGGTCTATCCCATGGTGGAGGACGATCGTCCTGTTGTGGAAAAGGTCTTCGATCCGGAATCTATCGAACAGGCCATGAAGGCCAAGGAGCTGATCGACAGGACTACACCCACGCCGGCCCGAAAGACTTCTACAGAGAAAAAACCGAATATAATCGAAATCGATCTTCATGCCGGCGAACTACTCGAAACGACGGCAGGGATGAAGAATGGGGATATATTGCAGTACCAACTGGACAAATTCCACGAAGTCATGAAACAATACGCCTCCTGTAAGGGACAAAAGATTGTTTTCATTCATGGCAAAGGTGAAGGCATATTGCGGCAGGCAATAGAAAAAGAACTGCGCACCCGCTACAAACAACATCGTTTTCAGGATGCCTCCTTCCGAGAATATGGTTTCGGTGCTACGATGGTGATCATTCAT","6.70","-1.59","44801","LWSTNYEYHLFRTMSTNNITIGSRVRFLNSQGGGIVRRISGRIAWVEGEDGFEIPTPIQECVTVGDNDTFIPAYKSPMEKRREEESKKEERNKRHKEVAVASDRKPTSSEEKPHLLHTELAGHDKLNVYLAYLPMNEQRLGTEPYECFLINDSNYCLQYNYLSLMSTGWKIRATGSIDPNTKLFIEEFTAADLQDMERICLQLTAYKERKTFLLKPALSVELRFDTIKFVKLHCFIENDFFEDKALVYPMVEDDRPVVEKVFDPESIEQAMKAKELIDRTTPTPARKTSTEKKPNIIEIDLHAGELLETTAGMKNGDILQYQLDKFHEVMKQYASCKGQKIVFIHGKGEGILRQAIEKELRTRYKQHRFQDASFREYGFGATMVIIH","1358991 1360151","TIGR ID: PG1281","conserved hypothetical protein; possible DNA mismatch repair protein","Cytoplasm","This sequence corresponds to gi:34397298 in Genbank.Its nearest neighbor in the NR database is gi:29347589 from Bacteroides thetaiotaomicron VPI-5482.","
InterPro
IPR002625
Domain
Smr protein/MutS2 C-terminal
PF01713\"[344-387]TSmr
PS50828\"[299-387]TSMR


","BeTs to 4 clades of COG1193COG name: MutS-like ATPases involved in mismatch repair, family 1Functional Class: LThe phylogenetic pattern of COG1193 is --tk-qvc-b--uj--o----Number of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon Mar 7 10:38:07 2005","Mon Mar 7 10:38:07 2005","Wed Feb 21 12:42:45 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Sep 10 15:35:02 2004","-71% similar to PDB:2HUH Crystal structure of putative DNA Mismatch Repair Protein (NP_811092.1) from Bacteroides Thetaiotaomicron VPI-5482 at 1.54 A resolution (E_value = 1.2E_37);","","","No significant hits to the Pfam 11.0 database","Wed Feb 21 12:42:45 MST 2001","34540983","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Mon Mar 7 10:38:07 2005","","1","","","PG1281" "PG1130","1360178","1360630","453","ATGGAAATAGAAAGAAAATTCCTGGTCTTAAATGACGATTTCAAAGCCAAGGCTACGGCGGTACACAACATTATACAAGCTTATCTCGTGGCTGATGAACGATGCACCGTCCGCATCCGATTGTGTAATGATGAAGCCTACCTCACCATCAAAGGGAAAACAAATGAAGGGGGATTGAGCAGATCGGAGTATGAGTATTCGGTGCCATTCGAAGAGGCTAAAGAGATGCTTACTCTATGCCTTCCCGGCTATATTATGAAGCAGCGGTATTGCGTCCCTCACAAAGGCCATGTATGGGAAGTGGATGTATTCGAAGGCCGGCACAAAGGGCTTGTAATTGCCGAAGTAGAGCTTGCCACTGAGGACGAAAGCATAGAGCTTCCCGATTGGATCGGAAATGAAGTGACGGGAGACAAGCGGTACTACAACTCATTCATTGCCGGCATTCAGAAG","5.00","-6.22","17349","MEIERKFLVLNDDFKAKATAVHNIIQAYLVADERCTVRIRLCNDEAYLTIKGKTNEGGLSRSEYEYSVPFEEAKEMLTLCLPGYIMKQRYCVPHKGHVWEVDVFEGRHKGLVIAEVELATEDESIELPDWIGNEVTGDKRYYNSFIAGIQK","1360151 1360630","TIGR ID: PG1282","conserved hypothetical protein","Cytoplasm","Several significant hits in gapped BLAST; e.g. residues 1-143 are 49% similar to dbj|BAA10730.1| hypothetical protein of Synechocystis sp., residues 1-147 are 42% similar to gb|AAF85156.1|AE004045_14 conserved hypothetical protein of Xylella fastidiosa, residues 1-147 are 39% similar to emb|CAB85390.1| conserved hypothetical protein of Neisseria meningitidis Z2491.","
InterPro
IPR008172
Domain
Adenylate cyclase
PF01928\"[1-148]TCYTH
InterPro
IPR012042
Family
Uncharacterised conserved protein UCP016487, CYTH region
PIRSF016487\"[1-150]TCYTH_UCP016487


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 64-115 are 47% similar to a (HYPOTHETICAL 18.0 KD PROTEIN) protein domain (PD057268) which is seen in Q55960_SYNY3.","","Thu Jun 14 11:25:44 MDT 2001","","Thu Jun 14 11:25:44 MDT 2001","Thu Jun 14 11:25:44 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:25:44 MDT 2001","Thu Jun 14 11:25:44 MDT 2001","","","Wed Feb 21 12:51:43 MST 2001","Fri Jun 22 16:22:22 MDT 2001","Wed Feb 21 12:51:43 MST 2001","","Fri Jun 22 16:22:22 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Jun 14 11:25:44 MDT 2001","-52% similar to PDB:2FBL The crystal structure of the hypothetical protein NE1496 (E_value = 1.0E_13);-37% similar to PDB:2HQ4 Crystal Structure of ORF 1580 a hypothetical protein from Pyrococcus horikoshii (E_value = 1.0E_13);-59% similar to PDB:2DIE Alkaline alpha-amylase AmyK from Bacillus sp. KSM-1378 (E_value = 1.0E_13);-60% similar to PDB:2GXG Crystal structure of EmrR homolog from hyperthermophilic archaea Sulfolobus tokodaii strain7 (E_value = 1.0E_13);","","","Residues 1 to 148 (E-value = 1.7e-21) place PG1130 in the CYTH family which is described as CYTH domain (PF01928)","Fri Jun 22 16:22:22 MDT 2001","34540984","","","","","","1","","","PG1282" "PG1131","1360696","1362855","2160","ATGAAAAAAAGACTATTGCTCCCCCTCTTTGCAGTTCTCTGCCTGTGCCAGATAGCTCATGCGGACGAGGGTATGTGGCTGATGCAACAGCTCGGACGGAAGTATGCGCAGATGAAAGAGCGCGGCCTTAAGATGAAGGAATACGACCTTTATAATCCCAACGGCACATCGCTGAAAGATGCCGTAGTGCTATTCGACGGAGGATGTACGGGCGAGGTCGTTTCCGATCGCGGACTGGTACTGACCAATCACCACTGCGGATACGATATGATCCAGGCTCACAGCACGCTCGAGCATAACTATCTCGAAAATGGATTTTGGGCGATGAGAGAAGCGGATGAATTACCGAACAAGGATATTTCCGTGGTATTCATCGACAAGATCGAAGATGTCACAGACTACGTCAAGAAAGATCTCAAAGCCATCAAAGATCCCAACAGCATGGACTACCTCTCTCCGAAGTACCTGCAAAAGTTGGCTGACAAGAAGGCCGGCAAGAACTTTTCTGCCAAGAATCCGGGGCTTTCCGTAGAGATCAAAGCCTTCTATGGGGGCAATCTCTACCTGATGTTTACCAAAAAGACTTATACGGATGTTCGACTGGTGGGAGCACCTCCCACCAGCATTGGCAAATTCGGTGCCGATACGGACAACTGGATCTGGCCTCGTCATACTGGCGACTTCTCCATCTTCCGTATCTATGCGGACAAGAATGGCAATCCCGCACCATACTCTGAAGATAATGTTCCGCTCAAGCCGAAGCGTTTCTTCAATATCTCCCTTGGTGGAGTACAAGAGAACGACTACGCCATGATAATGGGTTTCCCCGGTACTACGCACCGCTATTTCACGGCTTCCGAAGTAGACGAATGGAAAAGCATCGACAACGATATTCGCATCCGCATGCGTGATATTCGTCAGGGTGTCATGCTCAGGGAAATGCTGGCCGATCCTCAGATCAAAATCATGTATTCAGCTAAATATGCCGCTTCGCAGAATGCTTACAAACGTGCTATAGGTGCCAACTGGGCGATCAAGACACGCGGCCTGCGTCAAAACAAACAGGCGATGCAGGACAGGCTGATCGCATGGGGAGCGAAGCAGGGTACTCCTCGATATGAAGAGGCCGTACACGAAATCGATGCTACGGTAGCCAAGCGTGCGGATCTGCGCCGTCGTTATTGGATGATAGAAGAAGGCATCATCCGTGGGATCGAGTTTGCCCGTTCTCCTATCCCCACCGAAGATGAGACGAAAGCTCTGCAAGGCAATGATGCTTCGGCTCGCAAGGAGGCGATCGATAAGATTCGTACACGCTACAGCAAATTTGCCAACAAGGACTACAGTGCAGAGGTGGACAAGAAAGTGGCCGTAGCCATGCTGACGGAATACCTCAAGGAAATACCCTATGAGAATCTGCCTCTCCATTTGCGCCTCGTGAAAGACCGCTTTGCCGGAGACGTTCAGGCCTATGTGGACGACATATTCGCTCGCTCCGTTTTCGGTAGCGAAGCACAGTTCGATGCCTTTGCGGCAGTACCTTCTGTAGAAAAGCTTGCCGAAGATCCTATGGTACTCTTCGCCTCTTCGGTTTTCGACGAATACCGCAAACTCTACAACGAACTTCGTCCCTATGACGATCCTATTCTAAGGGCACAACGCACCTACATTGCAGGTCTCTTGGAAATGGATGGCGATCAGGATCAATTCCCGGATGCTAACCTGACACTTCGTTTCACCTATGGTCAAGTGAAGGGCTATTCACCCCGTGACAATGTTTACTACGGACATCAAACCACATTGGATGGTGTGATGGAAAAAGAAGATCCCGATAATTGGGAATTTGTAGTCGATCCCAAGCTGAAAGCCGTATACGAGCGTAAAGACTTCGGGCGTTATGCCGATCGCAGCGGTCGCATGCCTGTAGCCTTTTGCGCCACCACACATACAACCGGCGGCAACTCAGGCAGTCCGGTCATGAATGCCAACGGCGAACTGATCGGTCTCAACTTCGATCGTAACTGGGAGGGAGTCGGTGGCGACATCCAGTATCTGGCCGACTACCAGCGCAGCATCATTGTGGATATTCGCTACGTCCTGCTTGTGATAGACAAAGTAGGCGGTTGCCAACGCCTGTTGGATGAAATGAATATCGTTCCC","6.60","-2.56","81976","MKKRLLLPLFAVLCLCQIAHADEGMWLMQQLGRKYAQMKERGLKMKEYDLYNPNGTSLKDAVVLFDGGCTGEVVSDRGLVLTNHHCGYDMIQAHSTLEHNYLENGFWAMREADELPNKDISVVFIDKIEDVTDYVKKDLKAIKDPNSMDYLSPKYLQKLADKKAGKNFSAKNPGLSVEIKAFYGGNLYLMFTKKTYTDVRLVGAPPTSIGKFGADTDNWIWPRHTGDFSIFRIYADKNGNPAPYSEDNVPLKPKRFFNISLGGVQENDYAMIMGFPGTTHRYFTASEVDEWKSIDNDIRIRMRDIRQGVMLREMLADPQIKIMYSAKYAASQNAYKRAIGANWAIKTRGLRQNKQAMQDRLIAWGAKQGTPRYEEAVHEIDATVAKRADLRRRYWMIEEGIIRGIEFARSPIPTEDETKALQGNDASARKEAIDKIRTRYSKFANKDYSAEVDKKVAVAMLTEYLKEIPYENLPLHLRLVKDRFAGDVQAYVDDIFARSVFGSEAQFDAFAAVPSVEKLAEDPMVLFASSVFDEYRKLYNELRPYDDPILRAQRTYIAGLLEMDGDQDQFPDANLTLRFTYGQVKGYSPRDNVYYGHQTTLDGVMEKEDPDNWEFVVDPKLKAVYERKDFGRYADRSGRMPVAFCATTHTTGGNSGSPVMNANGELIGLNFDRNWEGVGGDIQYLADYQRSIIVDIRYVLLVIDKVGGCQRLLDEMNIVP","1360696 1362855","TIGR ID: PG1283","conserved hypothetical protein","Cytoplasm, Periplasm","One significant hit in gapped BLAST; e.g. residues 20-718 are 31% similar to gb|AAF84693.1|AE004008_17 hypothetical protein of Xylella fastidiosa.This sequence corresponds to BT0236.","
InterPro
IPR009003
Domain
Peptidase, trypsin-like serine and cysteine
SSF50494\"[1-720]TPept_Ser_Cys


","BeTs to 6 clades of COG0265COG name: Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domainFunctional Class: OThe phylogenetic pattern of COG0265 is --t-yqvCEBRHuj--oLinXNumber of proteins in this genome belonging to this COG is 3","***** IPB000126 (Serine proteases, V8 family) with a combined E-value of 5.7e-06. IPB000126B 645-661","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Feb 21 13:39:37 MST 2001","Tue Dec 2 15:54:09 2003","Wed Feb 21 13:36:25 MST 2001","Wed Feb 21 13:36:25 MST 2001","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 3-719 are 38% similar to PG0449, a predicted conserved hypothetical protein.","Wed Feb 21 14:08:23 MST 2001","Tue Dec 2 15:54:09 2003","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Feb 21 13:36:25 MST 2001","34540985","","","","","","1","","","PG1283" "PG1132","1363037","1365001","1965","ATGATTTCTCTATCCGAAATACCGGAGCGATACTACCGTCCGCAGAATACTTACGAAGAGACCCTGCTACGTCGCTTCGAGAATATACCGACCAATATATACCGCACCAACGACGAAGCAGCAGAAGTCATTGCCAACGAAATAGCCAAGGATATACGGGAGTCGCAAGCACAACACAAATACTACACCCTGGCTCTGTCCGGAGGCAATTCGCCGGTCATCGTCTACGACAAACTGATACAAAAACATCGCGAGGAAGGACTCAGCTTCCGCAACGTGATTGCCTTCACCGTATTCGAATACTATCCACCGGTCAGCGAGAACTTAGGCTGTCTGGCCAAATTGCGCAAGGACTTTCTCGACCATATCGACATCCTGCCGGAAAACATTATGGCACCCGATGTATATGCTTCGGAAGAAAAACTACTGCAAGCCTGTCAGGACTACGAATCCAAAATAGACAGCTTGGGTGGCATCAGACACATGCTCCTCGGCATCGGCTCGGCCGGCAGTATCGCCTTCAACAGCCCGGGGACGCACCCCAACACATACACACGACTCGTCGTACTCGGCCATACGGAGCACAACGATGCTCTGACGATATTCAGCTCCCACGACACCATCCCCCCATCGGCTATCAGTATGGGACTGGCTACCATCCAAAAAGCTCACAAGGTGACCCTGCTGGCATGGGGAGAGAGTAAGGCAGAGGTAATAGCCCAAGCTATCGAAGGAAAGATTTGCGAGGCTTCTCCGGCTTCGTCCCTGCAATTGCATCGCAATGCCTCCATCGTGCTGGATCTATCGGCATCGTCTTGTCTCACAAGGATCAGTCGTCCTTGGCTGGTGACGAGCTGTATCTGGAACAAACAGCTCATACGCAGGGCTGTGGTATGGCTGTGCGGACTGACCGGCAAGCCCATCCTGAAGCTGACGAACAAGGACTATACGGAGAACGGATTGGGCGAATTGCTGGCCAAATACGGCTCGGCCTACGAGGTGAACATCAAGCTCTTCAACGACATCCAGCACACCATCACCGGCTGGCCGGGCGGAAAACCCAATGCCGATGACAGCAGCAGGCCTGAGAGGGCACTACCCTATCCCAAGAGGGTGGTTATCTTCAGTCCCCACCCCGATGACGATGTCATTTCGATGGGAGGAACATTCCACAAATTGGTCAATCAGGGCCACGATGTACATGTAGCCTACCAGACCTCCGGCAATATAGCCGTGGGGGATGAAGAAGTGATTCGATATGTGTCGTACCTCAGAAATGTATGCCGCCAATACGGTCATGAGAGCAGCCCCATTCTGGCCAAAGCGGAAGAGGTGCGGCACTATCTCATGCACAAAAAGATAGAAGGGGATCCCGAGCAGGAGGATATCAGGTTTATGAAAGGAACCATACGACGCGAAGAAGCCCGGACGGCATGCAGATACTTGGGATTGCCGGAGGATCATGTTCATTTCCTCGATCTGCCTTTCTATGAGACGGGATTGATCAGGAAAAATCCTTTGGGAGAGGAAGACGTGCGCATCATCATGGCTCTATTGGAAGAGATACAGCCGCACCGGATATTCGTAGCAGGGGATTTGGCCGATCCGCACGGCACGCACCGCATTTGTCTGAACGCTGTTTTAGCTGCTATAGACGAGCTGAAAGAGGAGTCTTGGTTCAAGGAGGATTGTCGCGTATGGATGTATCGCGGAGCTTGGGCAGAGTGGGAAATAGACTACATAGAGATGGCCGTCCCGATGAGTCCGGACGAACTCCGCTTCAAACGAAACAGCATCCTCAAGCATCAGTCGCAAATGGAGTCCGCCCCCTTCCTTGGCGATGACGAACGGCTCTTCTGGCAGAGGGCGGAAGATCGGAACAGACAAACGGCCACCCTGTACGAAAAACTCGGCTTGGCCTCCTATGAAGCCATAGAGGCATTCGTACAGTATAGGCCTGTCGAA","6.00","-14.62","74400","MISLSEIPERYYRPQNTYEETLLRRFENIPTNIYRTNDEAAEVIANEIAKDIRESQAQHKYYTLALSGGNSPVIVYDKLIQKHREEGLSFRNVIAFTVFEYYPPVSENLGCLAKLRKDFLDHIDILPENIMAPDVYASEEKLLQACQDYESKIDSLGGIRHMLLGIGSAGSIAFNSPGTHPNTYTRLVVLGHTEHNDALTIFSSHDTIPPSAISMGLATIQKAHKVTLLAWGESKAEVIAQAIEGKICEASPASSLQLHRNASIVLDLSASSCLTRISRPWLVTSCIWNKQLIRRAVVWLCGLTGKPILKLTNKDYTENGLGELLAKYGSAYEVNIKLFNDIQHTITGWPGGKPNADDSSRPERALPYPKRVVIFSPHPDDDVISMGGTFHKLVNQGHDVHVAYQTSGNIAVGDEEVIRYVSYLRNVCRQYGHESSPILAKAEEVRHYLMHKKIEGDPEQEDIRFMKGTIRREEARTACRYLGLPEDHVHFLDLPFYETGLIRKNPLGEEDVRIIMALLEEIQPHRIFVAGDLADPHGTHRICLNAVLAAIDELKEESWFKEDCRVWMYRGAWAEWEIDYIEMAVPMSPDELRFKRNSILKHQSQMESAPFLGDDERLFWQRAEDRNRQTATLYEKLGLASYEAIEAFVQYRPVE","1362956 1365001","The significant gapped BLAST hits tend to correspond to residues of the N-terminal region only of PG1132. This may indicate an incorrectly predicted orf.MD Poss split ORF with glucosamine 6-P isomerase at the N-term.TIGR ID: PG1285","probable glucosamine-6-phosphate isomerase","Cytoplasm","Numerous significant hits to glucosamine-6-phosphate isomerase proteins in gapped BLAST; e.g. residues 35-272 are 33% similar to gb|AAC67284.1| glucosamine-6-P isomerase of Bacillus subtilis, residues 63-270 are 36% similar to dbj|BAB04139.1| N-acetylglucosamine-6-phosphate isomerase of Bacillus halodurans, residues 35-272 are 32% similar to gb|AAF03258.1|AF071897_1 glucosamine 6-phosphate isomerase of Giardia intestinalis.This sequence corresponds to BT0258.","
InterPro
IPR003737
Family
N-acetylglucosaminylphosphatidylinositol deacetylase
PF02585\"[373-551]TPIG-L
InterPro
IPR004547
Family
Glucosamine-6-phosphate isomerase
PTHR11280\"[51-313]TNagB
InterPro
IPR006148
Domain
Glucosamine/galactosamine-6-phosphate isomerase
PF01182\"[43-277]TGlucosamine_iso
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.10320\"[370-635]TG3DSA:3.40.50.10320
G3DSA:3.40.50.1360\"[29-274]TG3DSA:3.40.50.1360
SSF100950\"[29-308]TSSF100950
SSF102588\"[368-654]TSSF102588


","BeTs to 8 clades of COG0363COG name: Glucosamine-6-phosphate deaminase (Glucosamine-6-phosphate isomerase)Functional Class: GThe phylogenetic pattern of COG0363 is ----Y-vcEBrHuj--Olin-Number of proteins in this genome belonging to this COG is 2","***** IPB000457 (Glucosamine/galactosamine-6-phosphate isomerase) with a combined E-value of 3.2e-33. IPB000457A 62-93 IPB000457B 145-186 IPB000457C 216-267","Residues 119-237 are 38% similar to a (ISOMERASE DEAMINASE) protein domain (PD006132) which is seen in NAGB_BACSU.","","Thu Jun 14 11:26:04 MDT 2001","","Thu Jun 14 11:26:04 MDT 2001","Thu Jun 14 11:26:04 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:26:04 MDT 2001","Thu Jun 14 11:26:04 MDT 2001","","Fri Jun 22 16:26:08 MDT 2001","Mon May 7 17:48:51 MDT 2001","Tue Dec 2 16:05:05 2003","Tue Jan 7 14:33:01 2003","Fri Jun 22 16:26:08 MDT 2001","Fri Jun 22 16:26:08 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 40-270 are 34% similar to PG0722, a predicted glucosamine-6-phosphate isomerase. ","Fri Jun 22 16:26:08 MDT 2001","Thu Mar 15 09:16:03 MST 2001","-51% similar to PDB:2BKV STRUCTURE AND KINETICS OF A MONOMERIC GLUCOSAMINE-6-PHOSPHATE DEAMINASE: MISSING LINK OF THE NAGB SUPERFAMILY (E_value = 3.3E_30);-51% similar to PDB:2BKX STRUCTURE AND KINETICS OF A MONOMERIC GLUCOSAMINE-6-PHOSPHATE DEAMINASE: MISSING LINK OF THE NAGB SUPERFAMILY (E_value = 3.3E_30);-51% similar to PDB:1JT9 Structure of the mutant F174A T form of the Glucosamine-6-Phosphate deaminase from E.coli (E_value = 3.9E_23);-50% similar to PDB:1CD5 GLUCOSAMINE-6-PHOSPHATE DEAMINASE FROM E.COLI, T CONFORMER (E_value = 8.8E_23);-50% similar to PDB:1DEA STRUCTURE AND CATALYTIC MECHANISM OF GLUCOSAMINE 6-PHOSPHATE DEAMINASE FROM ESCHERICHIA COLI AT 2.1 ANGSTROMS RESOLUTION (E_value = 8.8E_23);","","","Residues 43 to 277 (E-value = 1.8e-24) place PG1132 in the Glucosamine_iso family which is described as Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase (PF01182)","Fri Jun 22 16:26:08 MDT 2001","34540986","","","","","","1","","","PG1285" "PG1133","1365594","1365115","480","ATGAAAATAAGCGAAAACGTAACTAAAGCGATCAATGACCAAATCAAGGCCGAAATGTGGTCTTCAAACCTCTATTTGTCCATGTCTGTGCATTTTGCGCAGGTAGGGTACAACGGCTTTGCTCATTGGCTCAAAAAGCAGAGCCTCGAGGAAATGGAACATGCCTACGATATGATGGACTACCTCCTGAAGCGTGGCGGCGAGGTGAAGATAGAAGCTATCGATGCCGTGCCCCAGAAGTTCGGCTCTGTATTGGAGGTATTCCAACAGGTGTACGAACACGAGTGCAAAGTGACCGAAATGATCGAGGCTGTCGTAAGGGCTGCTTCCGAAGCCGGAGATATGGCATCACAGGACTTCTTCTGGAAGTATATCCGCGAGCAGGTAGAAGAGGAAGCCACTGCTGCCGAAATCGTCGAAACGATCCGTCTCTCTCAGGAGCAGAATCTGATCTTCATCGATCATCAGCTCGCCCGGAGA","4.70","-9.83","18513","MKISENVTKAINDQIKAEMWSSNLYLSMSVHFAQVGYNGFAHWLKKQSLEEMEHAYDMMDYLLKRGGEVKIEAIDAVPQKFGSVLEVFQQVYEHECKVTEMIEAVVRAASEAGDMASQDFFWKYIREQVEEEATAAEIVETIRLSQEQNLIFIDHQLARR","1365594 1365115","TIGR ID: PG1286","ferritin","Cytoplasm","PG1133 is identical to a previously sequenced P.gingivalis protein in GenBank, AB016086.Numerous significant hits to ferritin proteins in gapped BLAST; e.g. residues 3-160 are 38% similar to gb|AAB90406.1| ferritin, putative of Archaeoglobus fulgidus, residues 1-128 are 42% similar to gb|AAD36204.1|AE001770_16 ferritin of Thermotoga maritima, residues 3-160 are 35% similar to gb|AAB84664.1| ferritin like protein of Methanothermobacter thermautotrophicus.","
InterPro
IPR001519
Domain
Ferritin, N-terminal
PD000971\"[4-55]TFerritin
PTHR11431\"[3-160]TFerritin_N
InterPro
IPR008331
Family
Ferritin and Dps
PF00210\"[8-145]TFerritin
InterPro
IPR009040
Domain
Ferritin-like
PS50905\"[1-146]TFERRITIN_LIKE
InterPro
IPR009078
Family
Ferritin/ribonucleotide reductase-like
SSF47240\"[3-157]TFerritin/RR_like
InterPro
IPR012347
Family
Ferritin-related
G3DSA:1.20.1260.10\"[2-157]TFerritin_rel
noIPR
unintegrated
unintegrated
PIRSF002559\"[2-160]TFerritin
PTHR11431:SF4\"[3-160]TPTHR11431:SF4


","BeTs to 6 clades of COG1528COG name: Ferritin-like protein RsgFunctional Class: PThe phylogenetic pattern of COG1528 is a-t---v-E-rHuj-------Number of proteins in this genome belonging to this COG is 1","***** IPB001519 (Ferritin) with a combined E-value of 1e-09. IPB001519B 89-143","Residues 3-156 are 90% similar to a (FERRITIN IRON STORAGE MULTIGENE FAMILY SUBUNIT CHAIN) protein domain (PD000971) which is seen in O83010_PORGI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Feb 21 15:38:17 MST 2001","Wed Feb 21 15:38:17 MST 2001","Wed Feb 21 15:38:17 MST 2001","Wed Feb 21 15:38:17 MST 2001","Wed Feb 21 15:38:17 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Apr 12 12:08:05 MDT 2001","-59% similar to PDB:1S3Q Crystal structures of a novel open pore ferritin from the hyperthermophilic Archaeon Archaeoglobus fulgidus (E_value = 7.0E_27);-59% similar to PDB:1SQ3 Crystal structures of a novel open pore ferritin from the hyperthermophilic Archaeon Archaeoglobus fulgidus. (E_value = 7.0E_27);-64% similar to PDB:1VLG Crystal structure of Ferritin (TM1128) from Thermotoga maritima at 2.00 A resolution (E_value = 2.0E_26);-64% similar to PDB:1Z4A Ferritin from T. maritima (E_value = 5.9E_26);-56% similar to PDB:2JD6 CRYSTAL STRUCTURE OF THE AS ISOLATED FERRITIN FROM THE HYPERTHERMOPHILIC ARCHAEAL ANAEROBE PYROCOCCUS FURIOSUS (E_value = 2.6E_21);","","","Residues 8 to 145 (E-value = 4.2e-48) place PG1133 in the Ferritin family which is described as Ferritin-like domain (PF00210)","Thu Apr 12 12:08:05 MDT 2001","34540987","Wed Feb 21 15:38:17 MST 2001","Ratnayake,D.B., Wai,S.N., Shi,Y., Amako,K., Nakayama,H. and Nakayama,K. 2000. Ferritin from the obligate anaerobe Porphyromonas gingivalis: purification, gene cloning and mutant studies. Microbiology 146 (Pt 5): 1119-1127. PubMed: 10832639.","","Wed Feb 21 15:38:17 MST 2001","","1","","","PG1286" "PG1134","1366106","1367188","1083","GTGGCATTAATCACAGGAATTACAGGGCAGGACGGCTCTTTCCTCGCCGAGTTTCTGATAGAAAAGGGGTACGAAGTGCACGGTATCCTGCGCCGTTCGTCTTCGTTCAATACGGGACGAATCGAACACCTCTATCTCGACGAATGGGTGCGGGACATGAAGCGCGAGCGGCTGATCAATCTGCACTACGGGGACATGACGGACAGCTCCTCTTTGGTACGCATCATTCAGACCACTCGCCCCTCGGAAATATACAATCTGGCCGCTCAAAGCCACGTCAAGGTGTCGTTCGACGTTCCGGAGTACACGGCAGAAGCCGATGCCGTGGGTACGCTTCGCCTCTTGGAAGCGGTGCGAATACTCGGATTGGAGAAGGAAACGCGGATCTATCAAGCCTCTACATCCGAGCTGTTCGGCAAGGTGCAGGAAGTGCCCCAACGGGAGAGCACTCCGTTTTACCCCCGATCGCCATACGGAGTGGCCAAGCAGTATGCTTTCTGGATCACGAAGAACTATCGCGAGAGCTACGGCATGTTTGCCGTCAATGGCATTCTCTTCAACCATGAGAGCGAACGCCGGGGCGAAACCTTTGTCACCAGAAAGATCACACTGGCTGCAGCCCGCATCAAGCAAGGATTTCAGGACAAGCTCTACCTCGGCAATCTGGATGCCCGTCGCGACTGGGGCTATGCTCGCGACTACGTGGAGTGTATGTGGCTGATGCTACAGCACAATATACCGGAAGACTTCGTCATTGCCACAGGGGAGATGCACAGTGTACGCGAGTTCGCCACCCTGGCATTTCGAGAAGTCGGCATAGAGCTGGAGTGGAAAGGCTGCGGAGTGGAGGAGCAAGGTATAGACATCGCCACGGGACGGGTTTTGGTAGAGGTGGATCCCAAATACTTCCGTCCCTGCGAAGTGGATCAGCTATTGGGAGACCCGACCAAAGCCAAGACTTTACTAAGATGGAATCCGACAAAGACCTCTTTCGAAGAATTGGTACGAATCATGGTCGAAGCAGACATGAGATTTGTCCGAAAATTGCATATGAGAGCCGAAATAGACACTTCTCATAATGAA","6.10","-4.93","41614","VALITGITGQDGSFLAEFLIEKGYEVHGILRRSSSFNTGRIEHLYLDEWVRDMKRERLINLHYGDMTDSSSLVRIIQTTRPSEIYNLAAQSHVKVSFDVPEYTAEADAVGTLRLLEAVRILGLEKETRIYQASTSELFGKVQEVPQRESTPFYPRSPYGVAKQYAFWITKNYRESYGMFAVNGILFNHESERRGETFVTRKITLAAARIKQGFQDKLYLGNLDARRDWGYARDYVECMWLMLQHNIPEDFVIATGEMHSVREFATLAFREVGIELEWKGCGVEEQGIDIATGRVLVEVDPKYFRPCEVDQLLGDPTKAKTLLRWNPTKTSFEELVRIMVEADMRFVRKLHMRAEIDTSHNE","1366052 1367188","TIGR ID: PG1288","GDP-mannose dehydratase","Cytoplasm","Numerous significant hits to GDP-mannose dehydratase proteins in gapped BLAST; e.g. residues 1-343 are 66% similar to gb|AAC98612.1| GDP-mannose dehydratase of Brucella melitensis, residues 1-343 are 64% similar to emb|CAB63300.1| GDP-mannose-4,6-dehydratase of Yersinia pseudotuberculosis, residues 1-348 are 62% similar to gb|AAD46729.1|AF078736_3 GDP-D-mannose dehydratase of Escherichia coli.This sequence is similar to BT1224. ","
InterPro
IPR001509
Family
NAD-dependent epimerase/dehydratase
PF01370\"[2-253]TEpimerase
InterPro
IPR002198
Family
Short-chain dehydrogenase/reductase SDR
PS00061\"[145-173]?ADH_SHORT
InterPro
IPR006368
Family
GDP-mannose 4,6-dehydratase
TIGR01472\"[1-346]Tgmd: GDP-mannose 4,6-dehydratase
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.720\"[1-273]Tno description
PTHR10366\"[4-281]T\"[303-349]TNAD DEPENDENT EPIMERASE/DEHYDRATASE
PTHR10366:SF32\"[4-281]T\"[303-349]TGDP MANNOSE-4,6-DEHYDRATASE


","BeTs to 7 clades of COG1089COG name: GDP-D-mannose dehydrataseFunctional Class: MThe phylogenetic pattern of COG1089 is a-t--q-Ce-R-uj-------Number of proteins in this genome belonging to this COG is 1","***** PF01370 (NAD dependent epimerase/dehydratase family) with a combined E-value of 3e-15. PF01370A 3-13 PF01370C 82-116 PF01370D 128-139 PF01370E 221-233 PF01370G 304-344","Residues 273-348 are 35% similar to a (GDP-D-MANNOSE DEHYDRATASE RFBD PROTEIN) protein domain (PD020394) which is seen in O24885_HELPY.Residues 3-339 are 62% similar to a (PROTEIN OXIDOREDUCTASE DEHYDROGENASE REDUCTASE NAD NADP) protein domain (PD000038) which is seen in GM4D_ECOLI.","","Thu Jun 14 11:26:21 MDT 2001","","Thu Jun 14 11:26:21 MDT 2001","Thu Jun 14 11:26:21 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:26:21 MDT 2001","Thu Jun 14 11:26:21 MDT 2001","","","Tue Apr 24 19:05:17 MDT 2001","Thu Dec 4 11:58:40 2003","Wed Feb 21 16:07:51 MST 2001","Fri Jun 22 16:35:36 MDT 2001","Fri Jun 22 16:35:36 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 3-241 are 23% similar to PG1365, a predicted dTDP-glucose 4,6-dehydratase (dTDP-D-glucose-4,6-dehydratase).","Fri Jun 22 16:35:36 MDT 2001","Fri Mar 23 14:06:25 MST 2001","-77% similar to PDB:1DB3 E.COLI GDP-MANNOSE 4,6-DEHYDRATASE (E_value = 7.9E_126);-77% similar to PDB:1T2A Crystal structure of human GDP-D-mannose 4,6-dehydratase (E_value = 5.7E_124);-70% similar to PDB:1N7G Crystal Structure of the GDP-mannose 4,6-dehydratase ternary complex with NADPH and GDP-rhamnose. (E_value = 1.7E_104);-70% similar to PDB:1N7H Crystal Structure of GDP-mannose 4,6-dehydratase ternary complex with NADPH and GDP (E_value = 1.7E_104);-66% similar to PDB:1RPN Crystal Structure of GDP-D-mannose 4,6-dehydratase in complexes with GDP and NADPH (E_value = 4.9E_91);","","","Residues 2 to 346 (E-value = 1.5e-10) place PG1134 in the Epimerase family which is described as NAD dependent epimerase/dehydratase family (PF01370)","Fri Jun 22 16:35:36 MDT 2001","34540988","","","Godfroid,F., Taminiau,B., Danese,I., Denoel,P., Tibor,A., Weynants,V., Cloeckaert,A., Godfroid,J. and Letesson,J.J. 1998. Identification of the perosamine synthetase gene of Brucellamelitensis 16M and involvement of lipopolysaccharide O side chainin Brucella survival in mice and in macrophages. Infect. Immun. 66 (11): 5485-5493. PubMed: 9784561.","","Fri Mar 23 14:06:25 MST 2001","1","","","PG1288" "PG1135","1367184","1368254","1071","ATGAATAAAGATGCCAAAATCTATGTGGCCGGTCATCGTGGTTTGGTGGGATCGGCCATTTGGAACAATCTCCGCCGGAAGGGTTATACCAACCTTGTCGGGCGAACTCATCAGGAGCTGGACTTGCTCGATGCCGTAGCCGTCAGAGAGTTTTTCGACAAGGAAGAGCCTCAATACGTATTTCTCGCAGCAGCGTATGTGGGAGGCATTGTGGCGAACAACCGTTTCCGTGCCGACTTCATCTATCGCAATCTGGGTATTCAGCAGAATATCATCGGAGAAAGCTACAGACACCGTGTCAGCAAGCTGATGTTTCTCGGCAGCACCTGTATCTACCCGCGCGATGCCCGTCAGCCGATGCGTGAGGAAGAATTGCTGACAGCTCCGCTGGAATATACCAACGAGCCATACGCCATAGCCAAAATCGCAGGACTGAAGATGTGCGAGAGCTTCAACCTCCAATACGGCACCAATTATATAGCAGTGATGCCGACCAACCTGTACGGGCCCAACGACAATTTCGATTTGGAGCGAAGCCATGTGCTTCCGGCCATGATCAGGAAGATTTACTTGGCCGATCGCCTGCTTCGCCACGATGAGGAAGCCGTTCGCACGGATTTGTCCATACGTCCTGTCGAAGGCATCGACGGATCTTCTTCTTTCAATGATATTCTCTCATTGCTGAAGCGGTACGGCATCACGGCCGAAAAGGTAAGCCTCTGGGGTACAGGCCGTCCGATGCGCGAATTTCTATGGAGCGAGGAGATGGCCGATGCCTGCGTATTCCTCATGGAGCACTGCGACTTCGCCGATATGTATCCCCACGGGACTCAAGAGATCCGCAACTGCCATATCAACATTGGCACCGGGGAGGAAATCTCCATTCGCGATTTGGCTTCGCTGATAGCAAAGACCATCGGTTACGAGGGCCTTATCGAGTTCGACTCCTCCAAACCGGACGGCACGATGCGCAAACTGACGGATGTAAGCAAGCTCCATGCCTTAGGCTGGAAGCATCGGATCGACATAACCACAGGTGTACGAATGTTAGTGGATTGGTATCGTCCGAAA","6.80","-0.80","40786","MNKDAKIYVAGHRGLVGSAIWNNLRRKGYTNLVGRTHQELDLLDAVAVREFFDKEEPQYVFLAAAYVGGIVANNRFRADFIYRNLGIQQNIIGESYRHRVSKLMFLGSTCIYPRDARQPMREEELLTAPLEYTNEPYAIAKIAGLKMCESFNLQYGTNYIAVMPTNLYGPNDNFDLERSHVLPAMIRKIYLADRLLRHDEEAVRTDLSIRPVEGIDGSSSFNDILSLLKRYGITAEKVSLWGTGRPMREFLWSEEMADACVFLMEHCDFADMYPHGTQEIRNCHINIGTGEEISIRDLASLIAKTIGYEGLIEFDSSKPDGTMRKLTDVSKLHALGWKHRIDITTGVRMLVDWYRPK","1367184 1368254","TIGR ID: PG1289","probable GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase (GDP-fucose synthetase)","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 2-354 are 48% similar to gb|AAG52124.1|AC010556_6 GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase of Arabidopsis thaliana, residues 6-354 are 47% similar to gb|AAG57112.1|AE005431_4 putative nucleotide di-P-sugar epimerase or dehydratase of Escherichia coli O157:H7, residues 6-354 are 47% similar to gb|AAC77843.1| GDP-L-fucose synthetase of Escherichia coli.This sequence is similar to BT1225.","
InterPro
IPR001509
Family
NAD-dependent epimerase/dehydratase
PF01370\"[7-288]TEpimerase
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.720\"[2-262]TG3DSA:3.40.50.720
PTHR10366\"[9-190]T\"[234-357]TPTHR10366
PTHR10366:SF27\"[9-190]T\"[234-357]TPTHR10366:SF27
SSF51735\"[5-355]TSSF51735


","BeTs to 10 clades of COG0451COG name: Nucleoside-diphosphate-sugar epimerasesFunctional Class: M,GThe phylogenetic pattern of COG0451 is AMTKYQVCEBRHUJ--o----Number of proteins in this genome belonging to this COG is 5","***** BP04287 (PROTEIN ANTIGEN NODULATION SIMILAR NOLK TRANSPLANTATIO) with a combined E-value of 1.1e-50. BP04287A 11-24 BP04287C 54-104 BP04287D 108-137 BP04287E 163-193","Residues 7-354 are 46% similar to a (PROTEIN OXIDOREDUCTASE DEHYDROGENASE REDUCTASE NAD NADP) protein domain (PD000038) which is seen in Q56873_YEREN.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Feb 21 17:12:18 MST 2001","Thu Dec 4 12:00:20 2003","Wed Nov 7 14:50:55 2001","Wed Feb 21 17:04:43 MST 2001","Wed Feb 21 17:04:43 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Feb 23 13:04:18 MST 2001","-64% similar to PDB:1BWS CRYSTAL STRUCTURE OF GDP-4-KETO-6-DEOXY-D-MANNOSE EPIMERASE/REDUCTASE FROM ESCHERICHIA COLI A KEY ENZYME IN THE BIOSYNTHESIS OF GDP-L-FUCOSE (E_value = 5.5E_87);-65% similar to PDB:1E6U GDP 4-KETO-6-DEOXY-D-MANNOSE EPIMERASE REDUCTASE (E_value = 9.4E_87);-64% similar to PDB:1BSV GDP-FUCOSE SYNTHETASE FROM ESCHERICHIA COLI COMPLEX WITH NADPH (E_value = 1.6E_86);-64% similar to PDB:1FXS GDP-FUCOSE SYNTHETASE FROM ESCHERICHIA COLI COMPLEX WITH NADP (E_value = 1.6E_86);-64% similar to PDB:1GFS GDP-FUCOSE SYNTHETASE FROM E. COLI (E_value = 1.6E_86);","","","Residues 7 to 356 (E-value = 1.5e-07) place PG1135 in the Epimerase family which is described as NAD dependent epimerase/dehydratase family (PF01370)","Wed Nov 7 14:50:55 2001","34540989","","","Rosano,C., Bisso,A., Izzo,G., Tonetti,M., Sturla,L., De Flora,A. and Bolognesi,M. 2000. Probing the catalytic mechanism of GDP-4-keto-6-deoxy-d-mannose Epimerase/Reductase by kinetic and crystallographic characterization of site-specific mutants. J. Mol. Biol. 303 (1): 77-91. PubMed: 11021971.","","Fri Feb 23 13:04:18 MST 2001","1","","","PG1289" "PG1136","1368396","1369412","1017","ATGGAAAATATCGATTGGTCATCGCTCTCATTCGGTTATAGGAAGACCGACTACAACGTGCGCTGTTACTATCGCAACGGCAAGTGGGGAGAGCTTGAAGTATCCTCAGAGGAAACGATCACGATGCACATGGCTGCCACTTGTCTCCACTACGGACAGGAAGCATTCGAAGGGATGAAGGCTTTCCGTGGCAAAGATGGCAAGATCCGCCTCTTCCGCATGGATGAGAATGCCAAGCGCATGAACAGATCATGCCAAGGTGTGGTAATGGCCGAGCTGCCGCAGGAAATCTTCGAAGCAGCTGTAATCAAGGCCGTAAAGATGAACGAGCGTTTCGTTCCTCCTTACGAAAGCGGAGCTTCTCTTTACATCCGTCCGCTTGTTATCGGACTGGGTGCACAAGTGGGTGTGAAGCCGGCTCCCGAGTATCTCTTCATCGTCTTTGTAACGCCCGTAGGGCCGTATTTCAAAGAAGGATTCAAACCGACCAAGATGGCCATCTTCCGCGACTATGACCGTGCAGCTCCTCTGGGTACGGGTACGATCAAAGTGGGCGGTAACTATGCAGCCGGTATGATCCCCACAGTGAAAGCTCACGAAATGGGCTACTCTGCAGCTATCTTCTTGGATGCCAAAGAAAAGAAGTACATAGACGAAGCCGGTCCGGCCAACTTCTTCGCCATCAAGAACAATACTTATATCACTCCCGAATCCAGCTCTATCCTGCCCTCTATCACAAACAAGAGTCTGATGCAGGTGGCTCAGGATCTGGGTCTGAAGGTAGAGCGTCGTCCGGTAGCCGAAGAAGAGCTTGCTACTTTCGAAGAAGCAGGTGCTTGTGGTACGGCAGCCGTGATCAGCCCTATCTCCGAGATTGACGACTTGGAGAACAACAAACAGTACGTCATCAGCAAGGACGGCAAACCGGGTCCGTGGTGTGAAAAGCTCTATCACGAACTTCGTGCCATCCAGTATGGCGACAAGCCCGACATTCATGGTTGGGTGACAATCCTCGAC","6.10","-3.01","37809","MENIDWSSLSFGYRKTDYNVRCYYRNGKWGELEVSSEETITMHMAATCLHYGQEAFEGMKAFRGKDGKIRLFRMDENAKRMNRSCQGVVMAELPQEIFEAAVIKAVKMNERFVPPYESGASLYIRPLVIGLGAQVGVKPAPEYLFIVFVTPVGPYFKEGFKPTKMAIFRDYDRAAPLGTGTIKVGGNYAAGMIPTVKAHEMGYSAAIFLDAKEKKYIDEAGPANFFAIKNNTYITPESSSILPSITNKSLMQVAQDLGLKVERRPVAEEELATFEEAGACGTAAVISPISEIDDLENNKQYVISKDGKPGPWCEKLYHELRAIQYGDKPDIHGWVTILD","1368396 1369412","TIGR ID: PG1290","branched-chain amino acid aminotransferase (branched-chain-amino-acid transaminase)","Cytoplasm","Numerous significant hits to branched-chain amino acid aminotransferase protein in gapped BLAST; e.g. residues 3-339 are 49% similar to gb|AAK05386.1|AE006361_2 branched-chain amino acid aminotransferase of Lactococcus lactis subsp. lactis, residues 1-335 are 48% similar to gb|AAF11184.1|AE002005_13 branched-chain amino acid aminotransferase of Deinococcus radiodurans, residues 1-335 are 47% similar to gb|AAC22845.1| branched-chain-amino-acid transaminase of Haemophilus influenzae Rd.This sequence is similar to BT3892.","
InterPro
IPR001544
Family
Aminotransferase, class IV
PD001961\"[201-294]TAminotrans_IV
PTHR11825\"[16-339]TAminotrans_IV
PF01063\"[31-321]TAminotran_4
SSF56752\"[3-336]TAminotrans_IV
InterPro
IPR005786
Family
Branched-chain amino acid aminotransferase II
PIRSF006468\"[1-339]TBCAT1
PTHR11825:SF2\"[16-339]TB_amino_transII
TIGR01123\"[29-338]TilvE_II
noIPR
unintegrated
unintegrated
G3DSA:3.20.10.10\"[187-325]TG3DSA:3.20.10.10
G3DSA:3.30.470.10\"[2-176]TG3DSA:3.30.470.10


","BeTs to 11 clades of COG0115COG name: Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyaseFunctional Class: E,HThe phylogenetic pattern of COG0115 is amt-YQvCEBRhUJ------xNumber of proteins in this genome belonging to this COG is 2","***** IPB001544 (Aminotransferases class-IV) with a combined E-value of 7.9e-16. IPB001544A 11-21 IPB001544B 50-62 IPB001544C 232-251 IPB001544D 276-289","Residues 29-317 are 49% similar to a (AMINOTRANSFERASE ACID TRANSFERASE PYRIDOXAL PHOSPHATE) protein domain (PD001961) which is seen in Q9ZJF1_BBBBB.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Feb 22 08:18:13 MST 2001","Sat Jan 3 10:01:00 2004","Wed Feb 21 17:23:50 MST 2001","Wed Feb 21 17:23:50 MST 2001","Wed Feb 21 17:23:50 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon May 7 17:55:21 MDT 2001","-48% similar to PDB:2COG Crystal structure of oxidized human cytosolic branched-chain aminotransferase complexed with 4-methylvalerate (E_value = 1.1E_36);-48% similar to PDB:2COI Crystal structure of oxidized human cytosolic branched-chain aminotransferase complexed with gabapentin (E_value = 1.1E_36);-48% similar to PDB:2COJ Crystal structure of reduced human cytosolic branched-chain aminotransferase complexed with gabapentin (E_value = 1.1E_36);-48% similar to PDB:2ABJ Crystal structure of human branched chain amino acid transaminase in a complex with an inhibitor, C16H10N2O4F3SCl, and pyridoxal 5' phosphate. (E_value = 3.2E_36);-48% similar to PDB:2HDK Crystal Structure of Cys315Ala-Cys318Ala Mutant of Human Mitochondrial Branched Chain Aminotransferase (E_value = 1.6E_32);","","","Residues 31 to 321 (E-value = 4.4e-93) place PG1136 in the Aminotran_4 family which is described as Aminotransferase class IV (PF01063)","Mon May 7 17:55:21 MDT 2001","34540990","","","Yvon,M., Chambellon,E., Bolotin,A. and Roudot-Algaron,F. 2000. Characterization and role of the branched-chain aminotransferase(BcaT) isolated from lactococcus lactis subsp. cremoris NCDO 763. Appl. Environ. Microbiol. 66 (2): 571-577. PubMed: 10653720.","","Thu Feb 22 08:18:13 MST 2001","1","","","PG1290" "PG1137","1371271","1369547","1725","ATGATTATGGGACAGTATTCAGAAGATTTTATTTTGACCGGTAAAAACGAAAAGGCTGTATTTTCCTTGAAAGTATATAGAGGAGACGGCATGGTTCTTTTGGCCATGAATTGGAAAAAGGGGCGTCCCCCTCGGGATTTTGTCGGTTTTTCCATAGAGTACAAAGAGCCGGATGGCGATCGCTACTATGCTTTGAAGAACAGGCTTTCTTTCCTCAATCAGGATGGAACTGTGTGTAAAGTGGCCAAGTCCTCCCTTTTGTCTCCTTTCCAAATGTTTCGCTGGGTACACTTTCCTCGCAATGCAGATAAAAACGGAGCTTTCGTCTATGTGGTAAAACCCGTTTTTATGAACTATTATGATGAATTGAGTTATGGGGAGGAGCAGCGAGTGGAGGTAGTATTGCATCGCGAGACCTACCCGGATTGTCTCGATGTGGCATTCACTCGCGGATTCATTTCGTCTCAGGCTTTTGTCGATAGATTTTCGGATGGAGGAGGAGTGGCTGCATTGTTGCCGAAGGACTCGAAGTCGGGAATCGACTTTGTACCTACTCACCCGAAAGCTCCCACTGCACTCTCTTGGATGGGGTTCGATGCTGTAGAGGCTTTGCTCCGTCTTTTAGACGAAGCTATAGCTGATCGAACGGCCGAAGTAAGGGTCGTGGCGTTTGATCTCAATCTTCCCGCTGTCGTGGAGCGATTTATACAATTGGGAGAAAGGCTTTCCATTATCATCGACGATAGTGCGGAACATAACGAATACGATTCGGCTGAAAGCATCGCCTTTGAAAGGCTGCTTTCTTCGACCAATGGTAAGGCGAAACGACAGCACATGGGACAATTGCAGCACAACAAAACGATTGTGGTGAACGGCTCTAAGGTAAAAGCTGCTGTTTGTGGATCTACTAATTTCACTTGGCGAGGTTTGTATGTGCAGTCCAATAATGTTGTTGTCGTTCGAGGAGAGGAGGCTATAAAACCGTTTTGGGATGCTTTTGAGAATTATTGGAATTGTTCGACACCGCGATTCGGCAAGACAAGTTCTGCTCAGTGGAATGATCTGAATCTTTCGGGTATAGATGCTCAAGTATCTTTCTCTCCGCATTCCAAAGACAATGCTTTGTTGGATGCTATTGCGTCAGATGTCGCTAATACTGAGTCGAGTCTCTTCTATTCACTGGCTTTCCTGGCGCAGACGACCGGTTCTCTGAAGGAGGAAATAGTACGTGTGTTGGAGAAAGACGATGTATTCGTCTATGGTATCTCGGATAAAAGAATGGGAGGACTCAATCTGCAAAAGCCCAATGGCAATCTTATGCCTGTGTATCCGCAAGCTATCAGTAAAAACATGCCGGAACCATTCAAATCAGAACCGACCGGAGGTGGCGGTACACGTATGCACCACAAGTTTATAGTAATTGACTTCGATAAGCCTACTGCCCGTGTCTATCTGGGATCATACAATTTTTCCGGTACTGCAGACCGTAAGAACGGAGAGAATCTGCTGCTCATCAAGGATCGGAAAGTAGCCATATCTTATATGATAGAAGCTTTGCGGATCTTTGATCACTACCACTTCAGGGTGAATCTGGCACAGGCGGAAGAGGATAATATGAGATTGTTTTTGACGAAAGCTCCTCGCACGAAGGATGAGAAACCATGGTGGGAGAAGTTCTACACGGATCCGAAGAAAATCAAGGATCGTGAAATGTTCTGTAAGGAA","7.30","1.46","65136","MIMGQYSEDFILTGKNEKAVFSLKVYRGDGMVLLAMNWKKGRPPRDFVGFSIEYKEPDGDRYYALKNRLSFLNQDGTVCKVAKSSLLSPFQMFRWVHFPRNADKNGAFVYVVKPVFMNYYDELSYGEEQRVEVVLHRETYPDCLDVAFTRGFISSQAFVDRFSDGGGVAALLPKDSKSGIDFVPTHPKAPTALSWMGFDAVEALLRLLDEAIADRTAEVRVVAFDLNLPAVVERFIQLGERLSIIIDDSAEHNEYDSAESIAFERLLSSTNGKAKRQHMGQLQHNKTIVVNGSKVKAAVCGSTNFTWRGLYVQSNNVVVVRGEEAIKPFWDAFENYWNCSTPRFGKTSSAQWNDLNLSGIDAQVSFSPHSKDNALLDAIASDVANTESSLFYSLAFLAQTTGSLKEEIVRVLEKDDVFVYGISDKRMGGLNLQKPNGNLMPVYPQAISKNMPEPFKSEPTGGGGTRMHHKFIVIDFDKPTARVYLGSYNFSGTADRKNGENLLLIKDRKVAISYMIEALRIFDHYHFRVNLAQAEEDNMRLFLTKAPRTKDEKPWWEKFYTDPKKIKDREMFCKE","1371271 1369547","TIGR ID: PG1291","hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR001736
Domain
Phospholipase D/Transphosphatidylase
SM00155\"[279-309]T\"[463-494]TPLDc
PS50035\"[463-494]TPLD
noIPR
unintegrated
unintegrated
G3DSA:3.30.870.10\"[202-347]T\"[463-524]TG3DSA:3.30.870.10
SSF56024\"[187-342]T\"[358-524]TSSF56024


","BeTs to 3 clades of COG1502COG name: Cardiolipin synthase, phoaphatidylserine synthase and related enzymes of the phospholipase D familyFunctional Class: IThe phylogenetic pattern of COG1502 is a---y-vcEB-hUJ----INxNumber of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Fri Feb 23 13:11:11 MST 2001","","Fri Feb 23 13:11:11 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Feb 23 13:11:11 MST 2001","-59% similar to PDB:1BYR CRYSTAL STRUCTURE OF A PHOSPHOLIPASE D FAMILY MEMBER, NUC FROM SALMONELLA TYPHIMURIUM (E_value = );-59% similar to PDB:1BYS CRYSTAL STRUCTURE OF NUC COMPLEXED WITH TUNGSTATE (E_value = );","","","No significant hits to the Pfam 11.0 database","Fri Feb 23 13:11:11 MST 2001","34540991","","","","","","1","","","PG1291" "PG1138","1372190","1374721","2532","ATGAGATTATCAGAATTACATACGGGCGATCAAGCAGTAATCGTACGAGTAGAAGGTCGCGGGGTATTCCGCAAACGGATTTTAGAAATGGGATTTGTGCACGGCAAGACGATTACCGTCGTCCAGTGTGCCCCATTGCGGGATCCGGTCTATTATCGCATCATGGACTACAATGTCTCTTTACGGAGAGAGGATGCAGCCAAAATAGAAGTGGAGCTCATATCCTCGAATGCGACTTCTTCACCGGCAAGCAATGACATAGGAGAGCAATCCGCAAATCCCGATTCGAACGAATCCATTCCAACAAATCCGACAGAGGATATTTCAGCGAAGACAAAATCGGAAATAGAGATCGAAGTCAAGCCGAACGGACATGTAATACGCGTTGCCCTGATAGGAAATCCCAACTGCGGTAAGACCTCCATATTCAACCGCGCCAGCGGTGCCCATGAACATGTGGGGAACTATAGCGGTGTGACGGTAGAAGCGAAAGAAGGTCTCTTCCGGCACGGGGACTACAAGATAGAGATTATCGACCTGCCCGGCACCTACTCTCTTTCTCCATACAGTCCTGAAGAACTGTATATTCGCCAATATCTAAGCGAGGAAACCCGTCCCGATCTGGTGCTGAATGTAGTAGACACCTGTAATCTGGAGCGCAATCTTTACCTGACCCTCCAGCTCAAAGAAATGGGCTTGCCAGTCGTCATCGCACTGAATATGTTCGATGAGTTCGAGAAAAAAGGCGACACCTTTGACTATCCTGCCCTGTCCGCCATGCTCGGTATCCCCATGGTTCCGACGGTGGGACGAACGGGACAAGGCCTGCCGGAACTTTTCGATACGCTTATCTCCATTCATGAAGGACGAAACAAAATCATACGTCCCATTCGTATCAACTATGGCAGCATCATAGAACCGGCCGTAGAAGCTCTGACTGAGAAAATAAACAATCAGCTCTCTCTACCCTATTCTCTTCCGGCACGCTATATAGCAGTCAAGCTGCTGGAAGGCGATAAGGAGATGAATCGCTTCGTAGGCGAACAGCCCAAAGGTCTTTTCATCCTTTCGGCCCGGGACTTCGCTCTACGGGAGATCGACGAACATCTGACAGTGGCGAGAGATGCCGAAAGCATTATCACGGATCAGCGATATGGATTCATCGCAGGAGCCCTCAAAGAAACATACCGGAGCAGCTACAAACAGCTCAAGACCCTGACCGATAAGATCGATCATATCGTCACCCATCGCGTCTTGGGTTTCCCTCTCTTCCTTTTATTCATGTTTATCATGTTCGAGGCTACGTTCGTTCTCGGCCGGTATCCGATGGACTGGATCGAAGCAGGTGTAGGTTGGATCGGCAGCATGGTAAATACCTTCATGCCCGATGGTTCGTTCAAGGATCTGATCGTGGACGGAGTAATAGGAGGCGTAGGCGGTGTAATCGTCTTCCTGCCGAACATCCTCATCCTCTACTTCTTCATTTCGCTGATGGAAGACAGCGGCTATATGGCACGTGCAGCCTTCATTATGGACAAGATCATGCACCGAATGGGGCTGCATGGCAAATCGTTCATCCCCCTTATCATGGGATTCGGCTGTAACGTTCCCGCCATTATGGCCACTCGCACGATCGAAAGCAAACAAAGTCGCATGATCACCATGCTCGTAACGCCCCTGATGAGTTGCAGTGCCCGTCTGCCGGTCTATTTGCTTTTGGCCGGTGCATTCTTCCCCGATTCGGCCGGCTTGGTGCTTTTCGGATTGTATTTTCTGGGTATTCTATTGGCCGTATTATTGGCGCGTCTTTTCAAAAAAACACTTTTCAAGGTAGAAGACGTTCCCTTCGTCATGGAACTCCCCCCCTATCGTATGCCGACCTCCCGCTCCGTAATCGTACACATGTGGAATAAGGCAGCACAATACCTGCGCAAAATGGGTAGCATCATCCTGCTTGCTTCGATCGTCATTTGGTTCCTCAGCTATTACCCTCGCTACTCTGAAGAGGCAGTACTGATCTCCCAAATCGAACAAATAGAGGGTAATCCGCAGCTTGACGAAGAGAAGAAGACATCTCAGATAGAAGAGTTGAATCGCAAAGCGCATATCGAACAGCAAGAACAATCCTACATCGGACGATTCGGCAAAGCCGTTCAACCCGTATTGGCACCGATCGGTTTCGATTGGAAAATGAGTGTAAGCTTGCTGACAGGTATGGCAGCCAAGGAGGTCGTAGTGAGCACCCTCGGTGTCATCTATACGGGCGACAGTGACGACAGCGACGAAGCCGCCCGGCGACTGGGCGAACGCATACGAGAGGATCGCGATGCAGAGGGCAACCATACATTCTCTCCCATCATCGCTCTGGCACTGATGGCTTTCGTGCTGATTTATTTTCCGTGCATCGCTACGGTGGTCGCTATCGGACGTGAAAGCGGACATTGGAAGTGGGCAGTTTTCTCCATTATATACTCCTGCTCGTTGGCATGGATCGTATCATTCCTAATCTACCGGATAGGAATACTTTTCTTC","6.10","-8.39","94619","MRLSELHTGDQAVIVRVEGRGVFRKRILEMGFVHGKTITVVQCAPLRDPVYYRIMDYNVSLRREDAAKIEVELISSNATSSPASNDIGEQSANPDSNESIPTNPTEDISAKTKSEIEIEVKPNGHVIRVALIGNPNCGKTSIFNRASGAHEHVGNYSGVTVEAKEGLFRHGDYKIEIIDLPGTYSLSPYSPEELYIRQYLSEETRPDLVLNVVDTCNLERNLYLTLQLKEMGLPVVIALNMFDEFEKKGDTFDYPALSAMLGIPMVPTVGRTGQGLPELFDTLISIHEGRNKIIRPIRINYGSIIEPAVEALTEKINNQLSLPYSLPARYIAVKLLEGDKEMNRFVGEQPKGLFILSARDFALREIDEHLTVARDAESIITDQRYGFIAGALKETYRSSYKQLKTLTDKIDHIVTHRVLGFPLFLLFMFIMFEATFVLGRYPMDWIEAGVGWIGSMVNTFMPDGSFKDLIVDGVIGGVGGVIVFLPNILILYFFISLMEDSGYMARAAFIMDKIMHRMGLHGKSFIPLIMGFGCNVPAIMATRTIESKQSRMITMLVTPLMSCSARLPVYLLLAGAFFPDSAGLVLFGLYFLGILLAVLLARLFKKTLFKVEDVPFVMELPPYRMPTSRSVIVHMWNKAAQYLRKMGSIILLASIVIWFLSYYPRYSEEAVLISQIEQIEGNPQLDEEKKTSQIEELNRKAHIEQQEQSYIGRFGKAVQPVLAPIGFDWKMSVSLLTGMAAKEVVVSTLGVIYTGDSDDSDEAARRLGERIREDRDAEGNHTFSPIIALALMAFVLIYFPCIATVVAIGRESGHWKWAVFSIIYSCSLAWIVSFLIYRIGILFF","1372190 1374721","TIGR ID: PG1294","ferrous iron transport protein B","Inner membrane, Cytoplasm","Numerous significant hits in gapped BLAST to ferrous iron transport protein B; e.g. residues 126-842 are 33% similar to gbAAD35145.1AE001692_2 iron(II) transport protein B of Thermotoga maritima, residues 129-840 are 33% similar to pirB75084 ferrous iron transport protein B homolog PAB0708 of Pyrococcus abyssi (strain Orsay).This sequence is similar to BT1592.","
InterPro
IPR002917
Domain
GTP-binding protein, HSR1-related
PF01926\"[127-243]TMMR_HSR1
InterPro
IPR003373
Family
Ferrous iron transport protein B
TIGR00437\"[133-811]TfeoB
InterPro
IPR005225
Domain
Small GTP-binding protein domain
TIGR00231\"[124-285]Tsmall_GTP
InterPro
IPR006073
Domain
GTP1/OBG
PR00326\"[129-149]T\"[150-168]T\"[196-214]TGTP1OBG
InterPro
IPR007167
Family
FeoA
PF04023\"[1-73]TFeoA
InterPro
IPR008988
Domain
Transcriptional repressor, C-terminal
SSF50037\"[1-74]TTranscr_rep_C
InterPro
IPR011619
Domain
Ferrous iron transport protein B, N-terminal
PF02421\"[276-477]TFeoB_N
InterPro
IPR011640
Domain
Ferrous iron transport B, C-terminal
PF07664\"[585-638]TFeoB_C
InterPro
IPR011642
Domain
Nucleoside recognition
PF07670\"[481-577]T\"[643-815]TGate
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[126-295]TG3DSA:3.40.50.300
PTHR11649\"[122-290]TPTHR11649
PTHR11649:SF5\"[122-290]TPTHR11649:SF5
SSF52540\"[127-286]TSSF52540


","BeTs to 9 clades of COG0370COG name: Ferrous ion uptake system protein FeoB (predicted GTPase)Functional Class: PThe phylogenetic pattern of COG0370 is AmTk-qvce---uj-------Number of proteins in this genome belonging to this COG is 1","***** IPB000765 (GTP1/OBG family) with a combined E-value of 2.2e-06. IPB000765B 121-172","Residues 605-836 are 33% similar to a (PROTEIN IRON TRANSPORT FERROUS B TRANSMEMBRANE) protein domain (PD006094) which is seen in FEOB_METJA.Residues 484-567 are 64% similar to a (PROTEIN IRON FERROUS TRANSPORT) protein domain (PD005672) which is seen in Q9ZLF3_BBBBB.Residues 175-322 are 42% similar to a (PROTEIN IRON FERROUS TRANSPORT) protein domain (PD007095) which is seen in O30277_ARCFU.Residues 707-837 are 37% similar to a (FERROUS IRON TRANSPORT PROTEIN) protein domain (PD208834) which is seen in Q9ZLF3_BBBBB.Residues 129-167 are 66% similar to a (PROTEIN GTP-BINDING INTERGENIC REGION HOMOLOG ERA IRON) protein domain (PD000414) which is seen in O58977_PYRHO.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon Feb 12 13:23:16 MST 2001","Wed Jul 9 19:28:43 2008","Mon Feb 12 13:23:16 MST 2001","Mon May 7 17:58:26 MDT 2001","Mon Feb 12 13:23:16 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Jul 9 19:28:43 2008","No significant hits to the PDB database (E-value < E-10).","","","Residues 1 to 73 (E-value = 3.9e-22) place PG1138 in the FeoA family which is described as FeoA domain (PF04023)Residues 131 to 840 (E-value = 3.6e-277) place PG1138 in the FeoB family which is described as Ferrous iron transport protein B (PF02421)","Thu Dec 4 15:53:56 2003","34540992","","He J, Miyazaki H, Anaya C, Yu F, Yeudall WA, Lewis JP., Role of Porphyromonas gingivalis FeoB2 in metal uptake and oxidative stress protection., Infect Immun. 2006 Jul;74(7):4214-23.PMID: 16790796 Dashper SG, Butler CA, Lissel JP, Paolini RA, Hoffmann B, Veith PD, O'Brien-Simpson NM, Snelgrove SL, Tsiros JT, Reynolds EC., A novel Porphyromonas gingivalis FeoB plays a role in manganese accumulation., J Biol Chem. 2005 Jul 29;280(30):28095-102. Epub 2005 May 18.PMID: 15901729","","Wed Jul 9 19:28:43 2008","","1","","","PG1294" "PG1139","1374937","1375389","453","ATGAAAACAGGACGGCAATACTATCCCCTCAGTATCCGGCAGCGAATCTTCTCTATCCTCATTATTTTATTGATAGTCTTTGCTCTAATACCGGCTTGGTACAACGGCATGTGGGTTTTGGTAGCTGCCTTGTGGGTTATCATTCTTCCTGCTGTAGGATGGAGCATAGCTATCATTCCACGCTATACGGAGGTGACAGAGGAACAAATAATCGTCAAGCAAATATGGGGGCAATTGGTCTTCGACAGGAAGGAAATGGAAATAGTGCCCATCGGCAAGGACGATCTCAAAAGCTCGCTTCGCACATTCGGCAATGGAGGTCTATTCGGCTATGCCGGTTATTTCCGGAATAAGAAACTGGGGAAGTACCGTATGTATGTAACGCGCTTGAAAGACTTATCGCTGCTCACGGATCGCAACGGCAAGAAAACGGTGATCAACCTGCGACAGGTA","11.00","11.98","17496","MKTGRQYYPLSIRQRIFSILIILLIVFALIPAWYNGMWVLVAALWVIILPAVGWSIAIIPRYTEVTEEQIIVKQIWGQLVFDRKEMEIVPIGKDDLKSSLRTFGNGGLFGYAGYFRNKKLGKYRMYVTRLKDLSLLTDRNGKKTVINLRQV","1374838 1375389","TIGR ID: PG1296","hypothetical protein","Inner membrane, Cytoplasm","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-32]?signal-peptide
tmhmm\"[12-32]?\"[38-58]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 11:26:39 MDT 2001","","Thu Jun 14 11:26:39 MDT 2001","Thu Jun 14 11:26:39 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:26:39 MDT 2001","Thu Jun 14 11:26:39 MDT 2001","","","","","Fri Feb 23 13:13:48 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Feb 23 13:13:48 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Jun 14 11:26:39 MDT 2001","34540993","","","","","","1","","","PG1296" "PG1140","1375974","1377770","1797","ATGGAAAACTTAAAGAACATTCAGCCCAGAGAGGATTTCAACTGGGAAGAGTTTGAGGCCGGTGGCGTCCATGCTGCCGTGAGTCGTCAGGAGCAGGAAGCTGCTTATGACAAAACGCTCAATACCATCAAGGAAAAGGAAGTGGTAATGGGTAGGGTAACTGCTATCAACAAGCGTGAAGTGGTTATCAATGTAGGGTACAAATCGGAAGGTGTGGTACCTGCAACAGAATTCCGCTACAATCCCGAACTCAAAGTGGGAGACGAAGTGGAAGTTTATATCGAGAATCAGGAAGATAAGAAGGGCCAGCTCGTCTTGTCTCACCGCAAGGCTCGTGCCGCTCGCTCTTGGGAGCGCGTGAACGAGGCTCTCGAAAAAGACGAAATCGTAAAGGGCTATGTGAAGTGTCGTACCAAGGGTGGTATGATCGTCGATGTATTCGGTATCGAGGCTTTCCTCCCGGGATCACAGATCGACGTGCGCCCCATTCGCGACTACGATGCATTCGTTGAGAAGACGATGGAGTTCAAGATTGTGAAAATCAATCAAGAATATAAGAATGTAGTTGTTTCCCACAAGGTGCTCATCGAAGCAGAGCTCGAACAACAGAAGAAAGAAATCATCGGCAAGCTCGAAAAAGGGCAGGTACTCGAAGGTATCGTCAAGAATATTACTTCTTACGGAGTATTTATCGACCTCGGTGGAGTGGATGGTCTTATCCATATCACTGACCTTTCATGGGGTCGTGTGGCTCATCCGGAAGAAATCGTACAGCTGGATCAGAAGATCAATGTCGTTATCCTCGACTTTGATGAAGATCGCAAGCGTATCGCTCTCGGACTCAAACAGCTGATGCCTCATCCTTGGGATGCTCTCGACAGCGAGCTTAAGGTAGGCGATAAGGTGAAGGGTAAAGTTGTGGTGATGGCAGATTACGGTGCTTTCGTTGAGATTGCACAGGGCGTTGAGGGTCTTATCCACGTAAGCGAAATGTCATGGACACAGCACTTGCGTTCTGCTCAGGACTTCCTGCATGTAGGCGACGAAGTGGAAGCCGTGATCCTGACGCTCGACCGCGAAGAACGCAAAATGTCGCTCGGTCTGAAGCAACTCAAGCCGGATCCTTGGGCTGATATCGAAACTCGTTTCCCTGTAGGCTCTCGTCACCATGCTCGTGTTCGCAACTTCACCAATTTCGGTGTATTCGTTGAGATCGAAGAGGGCGTAGATGGCCTTATCCATATTTCCGACCTTTCTTGGACGAAGAAGATCAAACACCCCAGCGAGTTTACGGAAGTAGGTGCTGATATCGAAGTTCAGGTAATCGAGATCGACAAGGAAAACCGTCGTCTCAGCTTGGGTCACAAACAGTTGGAAGAGAATCCTTGGGATGTATTCGAGACGGTATTCACTGTAGGATCTATCCACGAAGGAACGGTAATCGAAGTGATGGACAAGGGTGCTGTCGTTTCTCTGCCTTACGGTGTGGAAGGTTTTGCCACTCCGAAGCACATGGTGAAGGAAGATGGCTCACAGGCTGTACTCGAAGAGAAGTTACCTTTCAAGGTTATTGAGTTCAATAAGGATGCCAAGCGAATCATTGTATCTCATAGCCGTGTATTCGAAGATGAGCAGAAAATGGCTCAGCGTGAAGCCAATGCAGAGCGTAAGGCTGAAGCCAAAGCGGCTCAGAAAGAAGCTGCTGCCGAAGCTGCCAATCCTGCACAGGCTGTAGAGAAAGCCACTCTCGGAGACCTCGGCGAGCTGGCCGCTTTGAAAGAAAAGCTTTCAGAAAAC","5.20","-21.84","67457","MENLKNIQPREDFNWEEFEAGGVHAAVSRQEQEAAYDKTLNTIKEKEVVMGRVTAINKREVVINVGYKSEGVVPATEFRYNPELKVGDEVEVYIENQEDKKGQLVLSHRKARAARSWERVNEALEKDEIVKGYVKCRTKGGMIVDVFGIEAFLPGSQIDVRPIRDYDAFVEKTMEFKIVKINQEYKNVVVSHKVLIEAELEQQKKEIIGKLEKGQVLEGIVKNITSYGVFIDLGGVDGLIHITDLSWGRVAHPEEIVQLDQKINVVILDFDEDRKRIALGLKQLMPHPWDALDSELKVGDKVKGKVVVMADYGAFVEIAQGVEGLIHVSEMSWTQHLRSAQDFLHVGDEVEAVILTLDREERKMSLGLKQLKPDPWADIETRFPVGSRHHARVRNFTNFGVFVEIEEGVDGLIHISDLSWTKKIKHPSEFTEVGADIEVQVIEIDKENRRLSLGHKQLEENPWDVFETVFTVGSIHEGTVIEVMDKGAVVSLPYGVEGFATPKHMVKEDGSQAVLEEKLPFKVIEFNKDAKRIIVSHSRVFEDEQKMAQREANAERKAEAKAAQKEAAAEAANPAQAVEKATLGDLGELAALKEKLSEN","1375974 1377770","The annotation of GenBank, AAD33925, was based on 71% and 80% similarity with two Bacteroides fragilis proteins, X97122, originally annotated as hupA and hupB, heme uptake proteins. This annotation was revised in 1999 to putative ribosomal proteins S1.Veith et al. (2002) identified this protein by two-dimensional gel electrophoresis and peptide mass fingerprinting of outer membranes prepared from strain W50.TIGR ID: PG1297","30S ribosomal protein S1","Cytoplasm","PG1140 is identical to a previously sequenced P.gingivalis protein in GenBank, AAD33925.This sequence is similar to CT098, 30S ribosomal protein S1, and to BT4345.Numerous significant hits to ribosomal protein S1 in gapped BLAST; e.g. residues 186-596 are 75% similar to residues 20-427 of emb|CAA65789.1| putative ribosomal protein S1 of Bacteroides fragilis, residues 34-536 are 44% similar to residues 40-546 of gb|AAC67689.1| S1 Ribosomal Protein of Chlamydia trachomatis, residues 34-536 are 44% similar to residues 40-546 of sp|P38016|RS1_CHLMU 30S ribosomal protein S1 of Chlamydia muridarum.","
InterPro
IPR000110
Family
Ribosomal protein S1
PR00681\"[46-64]T\"[64-78]T\"[106-125]T\"[130-146]T\"[148-165]T\"[177-197]T\"[234-255]T\"[312-331]T\"[352-370]TRIBOSOMALS1
InterPro
IPR003029
Domain
RNA binding S1
PF00575\"[42-109]T\"[123-193]T\"[210-282]T\"[295-369]T\"[382-456]T\"[469-538]TS1
SM00316\"[44-109]T\"[125-193]T\"[212-282]T\"[297-369]T\"[384-456]T\"[471-538]TS1
PS50126\"[46-109]T\"[127-193]T\"[214-282]T\"[299-369]T\"[386-456]T\"[473-538]TS1
InterPro
IPR012340
Domain
Nucleic acid-binding, OB-fold
G3DSA:2.40.50.140\"[43-111]T\"[209-284]T\"[294-371]T\"[381-458]T\"[470-540]TOB_NA_bd_sub
noIPR
unintegrated
unintegrated
PTHR10724\"[211-334]TPTHR10724
SSF50249\"[33-185]T\"[201-292]T\"[294-394]T\"[395-530]TNucleic_acid_OB


","BeTs to 12 clades of COG0539COG name: Ribosomal protein S1Functional Class: JThe phylogenetic pattern of COG0539 is ----YqvCebrhuj--olinxNumber of proteins in this genome belonging to this COG is 1","***** PR00681 (Ribosomal protein S1 signature) with a combined E-value of 1.8e-71. PR00681A 46-64 PR00681B 64-78 PR00681C 106-125 PR00681D 130-146 PR00681E 148-165 PR00681F 177-197 PR00681G 234-255 PR00681H 312-331 PR00681I 352-370","Residues 115-211 are 49% similar to a (RIBOSOMAL PROTEIN S1 30S) protein domain (PD002626) which is seen in O84100_CHLTR.Residues 385-460 are 38% similar to a (RIBOSOMAL S1 RNA-BINDING 30S REPEAT) protein domain (PD000709) which is seen in RS1_MYCLE.Residues 30-112 are 73% similar to a (PROTEIN RIBOSOMAL S1 30S) protein domain (PD012792) which is seen in Q45140_BACFR.Residues 113-153 are 78% similar to a (HEME UPTAKE PROTEIN B) protein domain (PD167074) which is seen in Q45140_BACFR.Residues 43-191 are 26% similar to a (RIBOSOMAL PROTEIN S1 RIBOSOMAL) protein domain (PD077750) which is seen in O21261_RECAM.Residues 461-596 are 61% similar to a (HEME UPTAKE PROTEIN A) protein domain (PD077742) which is seen in Q45141_BACFR.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Thu Feb 7 17:53:13 2002","Wed Apr 18 09:06:26 MDT 2001","Mon Jan 5 12:40:33 2004","Thu Feb 7 17:53:13 2002","Fri Feb 23 13:30:11 MST 2001","Fri Feb 23 13:30:11 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 297-400 are 31% similar to PG0690, a predicted polyribonucleotide nucleotidyltransferase.","Fri Feb 23 13:30:11 MST 2001","Fri Feb 23 13:30:11 MST 2001","-62% similar to PDB:2OCE Crystal structure of hypothetical protein PA5201 from Pseudomonas aeruginosa (E_value = 5.9E_10);","","","Residues 42 to 109 (E-value = 1e-11) place PG1140 in the S1 family which is described as S1 RNA binding domain (PF00575)Residues 123 to 193 (E-value = 2.4e-11) place PG1140 in the S1 family which is described as S1 RNA binding domain (PF00575)Residues 210 to 282 (E-value = 1.1e-25) place PG1140 in the S1 family which is described as S1 RNA binding domain (PF00575)Residues 295 to 369 (E-value = 1.8e-20) place PG1140 in the S1 family which is described as S1 RNA binding domain (PF00575)Residues 382 to 456 (E-value = 1.4e-22) place PG1140 in the S1 family which is described as S1 RNA binding domain (PF00575)Residues 469 to 538 (E-value = 1.4e-07) place PG1140 in the S1 family which is described as S1 RNA binding domain (PF00575)","Mon Jan 5 12:40:33 2004","34540994","Fri Feb 23 13:30:11 MST 2001","Veith,P., Talbo,G., Slakeski,N., Dashper,S., Moore,C.,Paolini,R., Reynolds,E., Major outer membrane proteins and proteolytic processing of RgpA, and Kgp of Porphyromonas gingivalis W50, Biochem J. 2002 (in press).Ross,B., Barr,I., Patterson,M., Agius,C., Rothel,L., Margetts,M., Hocking,D. and Webb,E. Porphyromonas gingivalis polypeptides and nucleic acids. Patent: Australia (AU 98/01023)-PCT 10-DEC-1998; CSL Ltd; 45 Poplar Road; R&D; Parkville, Victoria; Australia.","Otto,B.R., Kusters,J.G., Luirink,J., de Graaf,F.K. and Oudega,B., Molecular characterization of a heme-binding protein of Bacteroides fragilis BE1, Infect. Immun. 64 (10), 4345-4350 (1996). See Comment.","Thu Feb 7 17:53:13 2002","Wed Apr 18 11:15:07 MDT 2001","1","","","PG1297" "PG1141","1379162","1378626","537","ATGCGTGTAATCAGAGGTAAATACGGACACAGGCGTTTCGATGTACCCAAAAGCTTCAATGCCCGTCCTACAACGGATTTTGCCAAAGAGAACCTCTTCAACATCCTATCCAACCGTTTCGATTTCGAAGGACTTTCGGCTATCGACCTATTCTCCGGCACGGGGAGTATAGCATTGGAATTAGTATCTCGGGGTTGTTCTTCCGTCACTTCCATAGAAAAACGCCGTGAGCATGCAGCCTTTATTCGCAACCTCATTAAGCATCTGAACGAAGAAAACTGCTGGAGAGTCTTCGAGACGGATGTATTTTTATTTCTGGAACGCAACAAAGTATGCCACCGCTATGACTTAGTCTTTGCCGATCCACCCTACGCCTTGACAGAGCTGGAGCAGCTACCGACCAAAGTATTAGAAAGTAACATACTGGCAGAAGACGGGCTTTTCATCCTCGAGCACCCTAAGGATTTCAGCTTTACAGAACATCCCCGATTCGAGGAACATAGAGCCTACGGTTCTGTCAATTTCACCTTCTTTCGG","6.90","-0.45","20911","MRVIRGKYGHRRFDVPKSFNARPTTDFAKENLFNILSNRFDFEGLSAIDLFSGTGSIALELVSRGCSSVTSIEKRREHAAFIRNLIKHLNEENCWRVFETDVFLFLERNKVCHRYDLVFADPPYALTELEQLPTKVLESNILAEDGLFILEHPKDFSFTEHPRFEEHRAYGSVNFTFFR","probable YhhF-related methylase","TIGR ID: PG1300","probable YhhF-related methylase","Cytoplasm","This sequence is also orthologous to CT487.Numerous significant and weak hits in gapped BLAST; e.g. residues 1-168 are 29% similar to gb|AAF83789.1|AE003936_3 conserved hypothetical protein of Xylella fastidiosa, residues 2-124 are 38% similar to emb|CAB05411.1| hypothetical protein of Mycobacterium tuberculosis, residues 1-155 are 32% similar to dbj|BAA98812.1| methylase of Chlamydophila pneumoniae, residues 1-152 are 31% similar to gb|AAC68087.1| Methylase of Chlamydia trachomatis.","
InterPro
IPR002052
Domain
N-6 Adenine-specific DNA methylase
PS00092\"[118-124]?N6_MTASE
InterPro
IPR004398
Family
Conserved hypothetical protein 95
PF03602\"[1-179]TCons_hypoth95
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.150\"[22-170]TG3DSA:3.40.50.150
SSF53335\"[1-171]TSSF53335


","BeTs to 10 clades of COG0742COG name: N6-adenine-specific methylaseFunctional Class: LThe phylogenetic pattern of COG0742 is ------vcebrhuj--olinxNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 1-152 are 30% similar to a (PROTEIN CONSERVED METHYLASE PUTATIVE) protein domain (PD007466) which is seen in O84494_CHLTR.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","Wed Mar 22 10:14:37 MST 2000","","Wed Mar 22 10:14:37 MST 2000","Fri Feb 23 14:05:32 MST 2001","Fri Feb 23 14:05:32 MST 2001","","Fri Feb 23 14:05:32 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Feb 23 14:05:32 MST 2001","-49% similar to PDB:2FHP Crystal Structure of Putative Methylase from Enterococcus faecalis (E_value = 4.6E_20);-54% similar to PDB:2ESR conserved hypothetical protein- streptococcus pyogenes (E_value = 1.4E_13);-52% similar to PDB:2FPO Putative methyltransferase yhhF from Escherichia coli. (E_value = 2.7E_12);-46% similar to PDB:2IFT Crystal structure of putative methylase HI0767 from Haemophilus influenzae. NESG target IR102. (E_value = 6.6E_11);-49% similar to PDB:1WS6 The Structure of Thermus thermphillus HB8 hypothetical protein TTHA0928 (E_value = 1.1E_10);","","","Residues 1 to 179 (E-value = 1.2e-43) place PG1141 in the Cons_hypoth95 family which is described as Conserved hypothetical protein 95 (PF03602)","Fri Feb 23 14:05:32 MST 2001","34540995","","","","","","1","","","PG1300" "PG1142","1380014","1379202","813","GTGGAAATCCCTGCTTCCGATATTCCGGCTACCCTCTCTGCTCACACTGCAGAAAGCTACGATATGTCCATCCGATTCCTATCGGATGGACTTGTTTTTAGCCTTTCCGATACAGAGGGCAAGGCATGCAGCACATGCACCTACCCCTTCGATTCGGGAGCGGAAGACTATTGCGCCGCCGTAAAAGAACTTTTTTTCCATTACCAGCATCTCACTTTCCCATATCGTCGCGTACATGTCAACTATCGTCCGGATTCGTACGTTCTCATTCCTCGCGCTTTGTACGAAGAGGGTAGAGCCGACTATTGGCTGAGGACTGCCATCCACCTGCCGGACGAAGGCAAGGGCGTAGCCGTCATGGAGTACAACCTGCCTCATCAGGATAAGATGCTGATTTTGGCTTGGGACAAGCCTCTCTATGAATTTCTAAGAAGGACACAGATCGGAACAGAGTTCACCCCCGGCTTTATCCCCTTTTTCAAAGAAACGGAGCGACAGAGCAGGCAACATACGGCCAAAAGAGTTGCCCTCAATCTCCGGCATGACAAACTCGACCTCTTCGTATTCGAAGGAGGTAGTCTGCTCTTTGCCAATACATACAGCTTCACGGACAATCAAGGCGTTCGCTCCATCGAGGAGGAAGTCCTTTTCTATCTGGTCACCGTCTGGAAGAGCTTACGGTTGGATATAGAGCATGACCGTATCGTTATCTGTATCCAACAAAATATCCGCGACCACTCTGTCGGAAAAGATGATCTCAGGCAAATATTGGAGCCGTTCTTCCGCCATATCGAACTGTGCAAAGAGCCGGTG","5.80","-7.57","31522","VEIPASDIPATLSAHTAESYDMSIRFLSDGLVFSLSDTEGKACSTCTYPFDSGAEDYCAAVKELFFHYQHLTFPYRRVHVNYRPDSYVLIPRALYEEGRADYWLRTAIHLPDEGKGVAVMEYNLPHQDKMLILAWDKPLYEFLRRTQIGTEFTPGFIPFFKETERQSRQHTAKRVALNLRHDKLDLFVFEGGSLLFANTYSFTDNQGVRSIEEEVLFYLVTVWKSLRLDIEHDRIVICIQQNIRDHSVGKDDLRQILEPFFRHIELCKEPV","1380014 1379202","TIGR ID: PG1301","hypothetical protein","Cytoplasm","No hit found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","","Fri Feb 23 14:07:08 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Feb 23 14:07:08 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Fri Feb 23 14:07:08 MST 2001","34540996","","","","","","1","","","PG1301" "PG1143","1380730","1380035","696","GTGGGGCAATACGGATTAGGAAGCGTCTTTAGAAGAGATTTTAATACAAAACAAAGTAAGATAACGATGAAGACTTTAATCAAGATTTTGGTGGCTGTAGCAGTCGTGGTGTTGGCATATCTCACCGTGATGAGCATATATACCCCCGTTAGTTTCGACAAGATTCAGGCCAGTCGTGAAACAGCTATCCAAAAGAAGCTGAAAAATATAGCTGACTATCAAGCTGCATTCGAAAGCATGTATGGTCGCTATGCCACAGCAGATGAATTGGTAAGCTTCCTCGCTAACGGCCGTGTCTACTACGTGAATGCCGAAGGCGAATACACCGACGACATGCGCGACAAAGGAATGACCGAAGCACAGGCAGCTCGTGCAGGCTTGCTCAAACGCGATACAGTGTGGGTTGCAGCCAAGGACTCTCTGCTCAAAGGTATTGACCCCAATACGGTCTTGGACATTCCCGGTTTTGCCGGCAAAAAGATTTTGGTTGAGGTAGGCTCCATCCAACAGGAGATAGGTCGGGACACTATAGATGTATCCGTATTTCAGGCATCGGTACCTTTCGTCGACTACCTCAGCGATCAGGATCAGATTCGTCTGAAGATGAAAATAAACGATGCAGAAGCCCGTACCAATGGATATGCCGGCCTTCGCATCGGATCGCTGAAAGAAGTGAAGAATACCGGTAACTGGGAA","9.40","2.00","25699","VGQYGLGSVFRRDFNTKQSKITMKTLIKILVAVAVVVLAYLTVMSIYTPVSFDKIQASRETAIQKKLKNIADYQAAFESMYGRYATADELVSFLANGRVYYVNAEGEYTDDMRDKGMTEAQAARAGLLKRDTVWVAAKDSLLKGIDPNTVLDIPGFAGKKILVEVGSIQQEIGRDTIDVSVFQASVPFVDYLSDQDQIRLKMKINDAEARTNGYAGLRIGSLKEVKNTGNWE","1380730 1380035","TIGR ID: PG1302","conserved hypothetical protein","Periplasm, Cytoplasm","This sequence corresponds to gi:34397312 in Genbank.Its nearest neighbor in the NR database is gi:60491671 from Bacteroides fragilis NCTC 9343.","
noIPR
unintegrated
unintegrated
signalp\"[1-41]?signal-peptide
tmhmm\"[29-49]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon Mar 7 10:48:18 2005","Mon Mar 7 10:48:18 2005","Fri Feb 23 14:08:37 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Feb 23 14:08:37 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Fri Feb 23 14:08:37 MST 2001","34540997","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Mon Mar 7 10:48:18 2005","","1","","","PG1302" "PG1144","1380795","1382207","1413","ATGGACAATTATTTGGCCGAGCAAATATTGAAAAATTTGCCGTTTACCCCGACACAAAGCCAAGATTCGGCTATTCGATCTTTGGCAAAGTATCTGTTCGACAGGGAACCTTATTCGGTTTTTTTGCTTCGCGGATATGCCGGTACGGGTAAGACACAGCTTATCGCTTCTGTGGTGCAGACTATTCTCGAGCAGGGAGCAGATTGTGAACTGCTGGCACCGACCGGACGTGCAGCCAAGGTACTGACGACCTATACACGACATCAGGCTTATACCATTCATCGTCAGATCTATCAGGCCACGGCTGCCGGAATAGAAGAAGGAGGTGCTTACAGGATCCGCCGCAGTAGCGGACGGAGTACAGTGTTCATCGTGGACGAATCCTCCATGATCGGGAATGAAAGCGTCGAGCCTACGCCCTTTGGCTCGGGCAGTCTGCTGAACGATTTACTGGCGTACGTGAACGAAACGGATGGTTGCCGTCTGATTCTGGCCGGAGATATGGCACAGCTTCCGCCGGTCGGCAGTGTGGTGAGTCCGGCATTGGATGCCGGGGTAATGGAAACTTCCTACGGATTGCGTATACATGAATGTACACTGACCGAGGTGGTACGTCAGCAGAAAGAATCCGCCATTCTCTCTCTGGCCACGAGCCTACGCCGTTTACTTTCCAATGGTATTTCGGAAAAAATCAAGTTGAACATAAGGGATTCGGGAGATGTGTCGGCTATTTCCGGCACTGAACTGATAGAAGCACTGGATGCTTCGTTTCGGACTGTAGGCATGGACGAGACCATTATTGTCAGCTATTCCAATAAACGTGCTTTGGCCTATAATCTGGGCATCCGCAGTCAGGTATTGTACTACGAAGAAGAGTTGATTCGGGGCGATCGATTGGTGGTGACGCGGAATAACTATCGTTATTGTGACAGGCGAGACAAGACAGACTTCGTTGCCAATGGAGAGATCGTGGAGATTTTGCGGTTGGGCAAACGATACGAGCTGTACGGATTTAGATTTGCCGATGCTACCATCAGCCTTGTGGAGCAAGGGCGCGAGATAGAAGCAAGATTGCTCCTCGATGGACTGACAGCCGAAACAGCCGGCTTGACTCATGCACAAAGACAAAAACTGTATGATGCAGTTGCTGAGGACTATAATTCTATGGCAAGTATCCCGGCCAGACGCAAAGCGATCAAAGAGGATGCTTTCTTTTCGGCCTTGGAAGTAAAGTATGCCTATGCCATCACCTGCCACAAAGCGCAGGGAGGACAGTGGAAACATGTCTATGTAGATATGGGTATGCTCAGCTATCTGCCTCATGACGAGCAACTCTGTCGTTGGCTGTATACGGCAGTTACCCGAGCTTCGGAGCGACTCTTTCTGGTCAATACTCCGAAGGATATGCTCCCA","6.20","-3.56","52492","MDNYLAEQILKNLPFTPTQSQDSAIRSLAKYLFDREPYSVFLLRGYAGTGKTQLIASVVQTILEQGADCELLAPTGRAAKVLTTYTRHQAYTIHRQIYQATAAGIEEGGAYRIRRSSGRSTVFIVDESSMIGNESVEPTPFGSGSLLNDLLAYVNETDGCRLILAGDMAQLPPVGSVVSPALDAGVMETSYGLRIHECTLTEVVRQQKESAILSLATSLRRLLSNGISEKIKLNIRDSGDVSAISGTELIEALDASFRTVGMDETIIVSYSNKRALAYNLGIRSQVLYYEEELIRGDRLVVTRNNYRYCDRRDKTDFVANGEIVEILRLGKRYELYGFRFADATISLVEQGREIEARLLLDGLTAETAGLTHAQRQKLYDAVAEDYNSMASIPARRKAIKEDAFFSALEVKYAYAITCHKAQGGQWKHVYVDMGMLSYLPHDEQLCRWLYTAVTRASERLFLVNTPKDMLP","1380795 1382207","TIGR ID: PG1303","exodeoxyribonuclease V","Cytoplasm","Two weak hits in gapped BLAST; e.g. residues 17-206 are 29% similar to gbAAF11453.1AE002029_2 exodeoxyribonuclease V, subunit RecD, putative of Deinococcus radiodurans, residues 40-176 are 33% similar to embCAB66276.1 putative deoxyribonuclease of Streptomyces coelicolor A3(2).This sequence is similar to BT3982.","
noIPR
unintegrated
unintegrated
SSF52540\"[6-467]TSSF52540


","BeTs to 6 clades of COG0507COG name: ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I memberFunctional Class: LThe phylogenetic pattern of COG0507 is -m--Y---ebrh----o-IN-Number of proteins in this genome belonging to this COG is 3","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Fri Jul 25 12:54:21 2008","Fri Jul 25 12:54:21 2008","Fri Feb 23 14:21:36 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Jul 25 12:54:21 2008","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jun 4 12:47:25 MDT 2001","34540998","","","","","","1","","","PG1303" "PG1145","1383567","1382230","1338","TTGACTACAATGAAGATAAGATATCTCCTCTCCATATTCCTGTTCTGTTGCTTTATGGGAGCTACCGGTGCGATGGCCACGAAGCCTGTGCTTCCACTGTCCCAACTGCAAAATCCTCCGTTAGCCGACACAGACAGCCTCCCGACATCTCCGATAGTCTCCGGCCGCCTGCTGATGAACTATCTGCAACTACCGCTCGTAGCCGAAAATTCTTCCGGTCCGTTAGCAGCAGGAATGTGGCAAATCACCATGCCTGAGATACCCTCGCGTTTGCAACAAGTCCGCCGGACAGAACCTCTTCCCGTACCGGATCTGAGCGACATGATTGCAGAAGTGGAATTGGCACGCAGAGTCCTGACCGAACTGCAATATCGCCGATTGGATCTTTTCACATATAGCCGTACGGAATTGGAGCCTTTCGCACCGGATTATTCCTATATAAAACCACAAGACATTCAGCTCATCGATGGGGGAGCCTTATCCGACAGAATAATCATGCCGGAAAAAATCCGCGGAATCGAACTCAAACCCCGCTACTGGTTTTTCAGCATGGAGACAATGCTGCAGTTCTCACAGAACTACATTTCCGAAAACTGGTACAAAGGAGGATCGAGCAACCTGAATATCATGTTCGGCAATCTGATCGTCCGCCAATATCGCAATAAGAAGATTCGCTGGAAAAATGAGTTGGAAAACAAACTAAGTGTCTTCAATGCAGCCAAAGACACGGTCAATCGCTATCGAGTGGCCGAGGATTTGCTCCGCCTGCGTTCCAACTTCGGCTATAAGGCTTTCAAGCAGTGGTACTACTCTTTCGATGCGGAAATGCGTACACAGCTATTTACCAATCGAGCTGAAAACAGCCTAAAAAAGCAATCTGCATTCCTTGCTCCGATGATCTTCAATTCCGGTATCGGTATGAAGTACGAACTGGATACAAAAAGCAAAAAAGTCTATGGCAAGTCCGCCAAACTGGGACTGTTCCTATCTCCCCTCTCGTACATCCTCAAATGGTCGATCAGAGACGATATAGACTTGGCTCGCCACGGCTTTCCCGAAGGAAAGACCATCGTACACGAATTGGGTTCGGCCATAAAAGCCGAACTCGTATGGAACTTCGATAGTCGTCTGAGTTGGCAGTCGCGCCTGTATGCCAATACCACATACGATAATACGGTGGCAGAATTTGAAAATGCCCTCAACCTGTCGCTCTCCAAACTGCTGAGTACCCGTATATATCTATACCTGCGCTATGACGACAGCGTATCGCTGCCGGACGGTAAAGGAACGTATTGGCAGGTGAACGAATTGGTGAGTATAGGTCTCTACTTCCATTTG","10.00","9.65","51457","LTTMKIRYLLSIFLFCCFMGATGAMATKPVLPLSQLQNPPLADTDSLPTSPIVSGRLLMNYLQLPLVAENSSGPLAAGMWQITMPEIPSRLQQVRRTEPLPVPDLSDMIAEVELARRVLTELQYRRLDLFTYSRTELEPFAPDYSYIKPQDIQLIDGGALSDRIIMPEKIRGIELKPRYWFFSMETMLQFSQNYISENWYKGGSSNLNIMFGNLIVRQYRNKKIRWKNELENKLSVFNAAKDTVNRYRVAEDLLRLRSNFGYKAFKQWYYSFDAEMRTQLFTNRAENSLKKQSAFLAPMIFNSGIGMKYELDTKSKKVYGKSAKLGLFLSPLSYILKWSIRDDIDLARHGFPEGKTIVHELGSAIKAELVWNFDSRLSWQSRLYANTTYDNTVAEFENALNLSLSKLLSTRIYLYLRYDDSVSLPDGKGTYWQVNELVSIGLYFHL","1383567 1382230","TIGR ID: PG1304","hypothetical protein","Outer membrane, Periplasm, Cytoplasm","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-26]?signal-peptide
tmhmm\"[9-27]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Fri Feb 23 14:26:17 MST 2001","","Fri Feb 23 14:26:17 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 180-444 are 26% similar to PG1562, a hypothetical protein.","Fri Feb 23 14:31:19 MST 2001","Fri Feb 23 14:26:17 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Fri Feb 23 14:26:17 MST 2001","34540999","","","","","","1","","","PG1304" "PG1145.1","1383437","1383694","258","GTGTCGGCTAACGGAGGATTTTGCAGTTGGGACAGTGGAAGCACAGGCTTCGTGGCCATCGCACCGGTAGCTCCCATAAAGCAACAGAACAGGAATATGGAGAGGAGATATCTTATCTTCATTGTAGTCAAAAACAGTTTTTACATAACCATTTTATGCGGGCAAAGTTATACTATTCTTTATTTTCCTTTTTGGGGGAATTTTCCACAACAGGATAAGATCATATTTTTACGCTTTGTATCCTGTTTTTTGAAAAAG","","","9881","VSANGGFCSWDSGSTGFVAIAPVAPIKQQNRNMERRYLIFIVVKNSFYITILCGQSYTILYFPFWGNFPQQDKIIFLRFVSCFLKK","","NO TIGR ID corresponds to this gene.","hypothetical protein","Inner membrane, Cytoplasm","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
tmhmm\"[37-59]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","","","Fri Feb 23 14:33:32 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Fri Feb 23 14:33:32 MST 2001","","","","","","","1","","","" "PG1146","1386631","1383767","2865","ATGAATACTAACAAATTCGAAAACCGCCATATTGGTATTGCCGAGCGCGACCTCTCCGTCATGCTCCGGACCATAGGCGTAGAGTCAATGGATCAGCTGATCCGCGAAACGATCCCCGGCGACATTCTGCTGCCCGAGCCTCTCGATTTGCCCGAAGCCATGACCGAGCGCGAACTGCTCGAACATTTCATGGAACTGGGATCCAAGAACAAGATCTTCACCTCCTACATCGGACAAGGCTGGTATGATACGGTCACGCCGGCTCCCATCCAGCGCAACGTATTGGAGAATCCTGCGTGGTACACCTCCTATACGCCTTATCAGGCGGAAGTATCACAGGGGCGTCTGGAGGCTCTCTTCAATTTCCAGACGGTGATCACCGAACTGACGGGGCTGCCCTTGACGAACTGCTCGCTCCTCGACGAAGCCACTGCCGGTGCCGAAGCTGCACGTATGTTCTTCGATACCCGTTCGCGCACACAAATCAAGGCTGGTGCCAACGTTCTCTTCGTGGACAAGAAGGTATTCCGCTCTACGATCGAAGTGATCCGCACCCGTATCATACCTCAGGGTATGCAGATCGTGGTGGATGACTACAAGACATTCAGCTTCACACCCGAAGTATTTGCTGCCATCGTACAGTTCCCCGATGCAGAAGGATCTGTCAATGATTATAAATCATTCATCGAAGCGGCTCATGCTGCCAATGCCAAAGTAGCCGTAGTAGCCGACCTCTTGAGTATGACCATCCTGACTCCTCCGGGAGAATGGGGGGCCGATATCGTATTCGGATCGGCACAGCGTTTCGGTATTCCCATGTATTACGGCGGCCCGTCAGCAGGATATTTGGCTACGAGTATGGACTACAAACGCAACATCCCCGGCCGTATTATCGGTATGTCCAAAGATGCTTACGGACGTCCGGCTTATCGTCTGGCATTGCAAACGCGCGAACAGCACATCAAACGAGAGAAAGCCACATCGAATATCTGTACCGCACAAGCTTTGTTGGCTACGATGAGCAGCTTCTATGCCGTGTATCACGGTGCCGATGGCTTGCGCCACATAGCCGGCAGGGTACATGCTTATGCAGGATTTATCAGCGAGAAGCTCTCCGGACTCGGTTATAAGCTGACAAATAAGGACTTTTTCGACACGCTTCGTGTGGAGCTGCCGGCCGGTGTCACAGCAGACAAAGTACGCGAACTGGCCGAAGAATGCAGCGTAAACTTCTTCTACCCTGCCGATGGCAGCATCCTGATCAGTTTGGACGAGACTACACTGCCGTCCGACCTCGGTGTTCTGCTCTATATCTTCTCATCCGTTTTGGGCAAAGAGGAGACAATCTCGGAGGACATTGCCATCGACAAACGGTATTTCGACGGTGCCTTTGCCCGTACCTCGAACTTCCTGGACTACGACGTATTCAACAACTACCACACCGAGACGGAGCTGATGCGCTACATCAAACGCCTCGAACGCAAGGACATTTCACTGGCACACTCCATGATTCCGCTGGGTTCTTGTACGATGAAGCTGAATGCCGCATCCGAGCTGTTCAACCTCTCGATGCCGCAGTTCAATGCCATTCACCCGTATGCTCCGAAAGACCAGACGGAAGGCTACAACGAGATGCTCGAAAGCCTCGAACGTTACTTGGCCGTTATCACCGGTTTCGATGCCACTTCGCTCCAACCTAACTCCGGTGCAGCAGGCGAATACACCGGATTGCTCACTATTCGCGGCTATCTGAACAGCATCGGACAGGGACACCGCCATCTGGTTATCCTGCCGGCTTCTGCCCACGGTACCAATCCGGCCAGTGCCATCCAGTGCGGATACGATACGGTGACGGTAGCTTGCGACGAGCGAGGCAACGTAGATATGGAGGACTTCATGGCCAAGACCGAACAGCACAAGGACGAAATCGCTGCCATGATGATTACCTACCCGAGTACGCACGGTATCTTCGAGACGAACATTATCGATCTTTGCCATCGCATCCACGAGTGTGGAGGTCAGGTGTATATGGACGGTGCCAACATGAACGCTCAGGTAGGACTGACCAGTCCGGGCTTCATCGGAGCAGACGTGTGCCATTTGAATCTGCACAAGACCTTTGCTATCCCCCACGGAGGTGGAGGTCCGGGTGTAGGTCCTATCTGTGTGGCCAAGCACTTGACTCCATTCCTGCCATCGCACCCGCTGCGTGAGGACTACAACGGCTTGGAAGTATCCGCTGCTCCATACGGAAGTGCAGGGGTAACGACTATCACCTATGCTTACATTCGTCTGATGGGATACGAAGGTCTGCGCAGAGCTACGAAAATCGCCATCCTGAACTCCAACTACATGGCTAACCGTCTGAAGGATACTTTCGGTATCGTCTATACGGGAGCCACGGGTCGCATAGGTCATGAGCTGATCCTCGAATGTCGCAAGATCAAAGAAAGCGGTATCGACGAGAACGATATAGCCAAGCGTCTGATGGACTTCGGCTATCACGCTCCGACGCTCTCTTTCCCCGTACATGGCACTCTGATGATAGAGCCGACAGAGAGCGAGAGCCTGGCCGAGCTGGATCGTTTCATCGATGTGATGAACTGTATCTGGGAAGAGATACAGGAAGTGGCTCGTGGCGAACAGGAAGCTACCGACAACGTATTGAAGAATGCTCCGCATCCTCAATACGAGGTGACGGCTAACGACTGGTCGCATCCGTACTCTCGCGAAAAGGCAGCTTATCCGCTGGAATACCTGCGTGAGAATAAGTTCTGGCTCAACGTAGCCCGTATCGACAACGGCTATGGCGACCGCAATTTGGTTCCGAGCCTCTGCAGCGCATGTGAGGTTTTCAACAATCAA","5.20","-29.06","105961","MNTNKFENRHIGIAERDLSVMLRTIGVESMDQLIRETIPGDILLPEPLDLPEAMTERELLEHFMELGSKNKIFTSYIGQGWYDTVTPAPIQRNVLENPAWYTSYTPYQAEVSQGRLEALFNFQTVITELTGLPLTNCSLLDEATAGAEAARMFFDTRSRTQIKAGANVLFVDKKVFRSTIEVIRTRIIPQGMQIVVDDYKTFSFTPEVFAAIVQFPDAEGSVNDYKSFIEAAHAANAKVAVVADLLSMTILTPPGEWGADIVFGSAQRFGIPMYYGGPSAGYLATSMDYKRNIPGRIIGMSKDAYGRPAYRLALQTREQHIKREKATSNICTAQALLATMSSFYAVYHGADGLRHIAGRVHAYAGFISEKLSGLGYKLTNKDFFDTLRVELPAGVTADKVRELAEECSVNFFYPADGSILISLDETTLPSDLGVLLYIFSSVLGKEETISEDIAIDKRYFDGAFARTSNFLDYDVFNNYHTETELMRYIKRLERKDISLAHSMIPLGSCTMKLNAASELFNLSMPQFNAIHPYAPKDQTEGYNEMLESLERYLAVITGFDATSLQPNSGAAGEYTGLLTIRGYLNSIGQGHRHLVILPASAHGTNPASAIQCGYDTVTVACDERGNVDMEDFMAKTEQHKDEIAAMMITYPSTHGIFETNIIDLCHRIHECGGQVYMDGANMNAQVGLTSPGFIGADVCHLNLHKTFAIPHGGGGPGVGPICVAKHLTPFLPSHPLREDYNGLEVSAAPYGSAGVTTITYAYIRLMGYEGLRRATKIAILNSNYMANRLKDTFGIVYTGATGRIGHELILECRKIKESGIDENDIAKRLMDFGYHAPTLSFPVHGTLMIEPTESESLAELDRFIDVMNCIWEEIQEVARGEQEATDNVLKNAPHPQYEVTANDWSHPYSREKAAYPLEYLRENKFWLNVARIDNGYGDRNLVPSLCSACEVFNNQ","1386631 1383767","TIGR ID: PG1305","probable glycine dehydrogenase [decarboxylating], mitochondrial precursor (glycine decarboxylase) (glycine cleavage system p-protein)","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 4-952 are 49% similar to dbj|BAA18516.1| P protein of glycine cleavage complex of Synechocystis sp., residues 3-955 are 48% similar to pir||A42109 glycine dehydrogenase (decarboxylating) component Pprecursor of Pisum sativum, residues 3-945 are 48% similar to emb|CAA85353.1| P-protein of the glycine cleavage system of Flaveria pringlei.This sequence is similar to BT1147.","No hits reported.","BeTs to 8 clades of COG1003COG name: Glycine cleavage system protein P (pyridoxal-binding), C-terminal domainFunctional Class: EThe phylogenetic pattern of COG1003 is ---kyqvcebr----------Number of proteins in this genome belonging to this COG is 1","***** BP03319 (GLYCINE DEHYDROGENASE DECARBOXYLASE CLEAVAGE) with a combined E-value of 0. BP03319A 4-43 BP03319B 66-94 BP03319C 95-123 BP03319D 126-153 BP03319E 242-274 BP03319F 275-306 BP03319G 307-328 BP03319H 329-360 BP03319I 409-439 BP03319J 487-534 BP03319K 535-572 BP03319L 573-615 BP03319M 616-655 BP03319N 656-680 BP03319O 681-709 BP03319P 710-737 BP03319Q 745-774 BP03319R 775-816 BP03319S 819-855 BP03319T 856-894 BP03319U 924-947","Residues 546-789 are 33% similar to a (PYRIDOXAL PHOSPHATE AMINOTRANSFERASE TRANSFERASE PROTEIN) protein domain (PD000087) which is seen in GCS1_BACSU.Residues 464-541 are 62% similar to a (GLYCINE DEHYDROGENASE DECARBOXYLATING) protein domain (PD003319) which is seen in GCSP_CHICK.Residues 793-945 are 52% similar to a (GLYCINE DEHYDROGENASE DECARBOXYLATING) protein domain (PD003536) which is seen in O80988_ARATH.Residues 10-119 are 44% similar to a (GLYCINE DEHYDROGENASE DECARBOXYLATING) protein domain (PD003559) which is seen in P74416_SYNY3.Residues 121-277 are 47% similar to a (GLYCINE DEHYDROGENASE DECARBOXYLATING) protein domain (PD149802) which is seen in P74416_SYNY3.Residues 303-431 are 51% similar to a (GLYCINE DEHYDROGENASE DECARBOXYLATING) protein domain (PD186164) which is seen in Q21962_CAEEL.Residues 726-789 are 56% similar to a (GLYCINE DEHYDROGENASE DECARBOXYLATING) protein domain (PD150885) which is seen in GCSP_MYCTU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Fri Feb 23 14:55:02 MST 2001","Thu Dec 4 10:43:39 2003","Fri Feb 23 14:55:02 MST 2001","Fri Feb 23 14:55:02 MST 2001","Fri Feb 23 14:55:02 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Feb 23 14:55:02 MST 2001","-53% similar to PDB:1WYT Crystal structure of glycine decarboxylase (P-protein) of the glycine cleavage system, in apo form (E_value = 1.2E_63);-53% similar to PDB:1WYU Crystal structure of glycine decarboxylase (P-protein) of the glycine cleavage system, in holo form (E_value = 1.2E_63);-53% similar to PDB:1WYV Crystal structure of glycine decarboxylase (P-protein) of the glycine cleavage system, in inhibitor-bound form (E_value = 1.2E_63);-43% similar to PDB:1QXM Crystal structure of a hemagglutinin component (HA1) from type C Clostridium botulinum (E_value = 3.6E_44);-40% similar to PDB:2BBR Crystal Structure of MC159 Reveals Molecular Mechanism of DISC Assembly and vFLIP Inhibition (E_value = 3.6E_44);","","","Residues 8 to 439 (E-value = 9.8e-232) place PG1146 in the GDC-P family which is described as Glycine cleavage system P-protein (PF02347)","Mon May 7 18:05:36 MDT 2001","34541000","","","","","","1","","","PG1305" "PG1147","1387280","1386639","642","ATGACAACGACAGAAGTAAAGATGTTCACCTTCAATTCGGTGGCAGAAAATACATATATCCTTTACGACTCCACGGGCGAAGCTGCACTTATCGACTGCGGCTGTATGGATGGGAGCGAAGAGCAGCAGCTACTCCGCTTCGTTCAGGAACAGCAACTGACAGTAAAGCTCCTGCTCAATACACATTTGCACTTCGACCATGCCTGGGGCAACGGCTTTGCAGCTAAAACCTTCGGTCTGCCTGTGCTCACGCATCGGGCTGAAGTGGAAGAAATGCCTTCTCCGTCCAAGCAACTGGCTGCCTTCGGCATGTTCGGTACGATGGACGAACCGCCCATACAATACATTGCTCCGGGCGACGTTCTTCAATTGGGAGAGAGTATCATCAAGGTGCTTTTCGTCCCGGGGCACTCGCCCGGTCATCTGGCATTCTATTGCCCGCAGGCCCAAGCTGTATTTACCGGCGATGCGCTCTTTGCTGGCGATATGGGCCGGACCGACTTATGGGGCGGCAGCTACGAACTCCTGAAAAAGAGCATTCGTACGGAACTTCTCCCCCTTCCCGACGATACGGTAGTCTACCCCGGACACGGGCCTACTTCTACGATAGCTTACGAACGAACTAATAACCCTTTTCTCGAT","4.50","-12.46","23534","MTTTEVKMFTFNSVAENTYILYDSTGEAALIDCGCMDGSEEQQLLRFVQEQQLTVKLLLNTHLHFDHAWGNGFAAKTFGLPVLTHRAEVEEMPSPSKQLAAFGMFGTMDEPPIQYIAPGDVLQLGESIIKVLFVPGHSPGHLAFYCPQAQAVFTGDALFAGDMGRTDLWGGSYELLKKSIRTELLPLPDDTVVYPGHGPTSTIAYERTNNPFLD","1387337 1386639","TIGR ID: PG1306","conserved hypothetical protein (probable hydrolase)","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 17-213 are 39% similar to dbj|BAB06539.1| unknown conserved protein of Bacillus halodurans, residues 7-213 are 33% similar to pir||F64832 probable hydrolase of Escherichia coli, residues 15-213 are 35% similar to gb|AAF94429.1| glyoxylase II family protein of Vibrio cholerae.","
InterPro
IPR001279
Domain
Beta-lactamase-like
PF00753\"[15-197]TLactamase_B
noIPR
unintegrated
unintegrated
PD177909\"[17-210]TPD177909
G3DSA:3.60.15.10\"[5-213]TG3DSA:3.60.15.10
PTHR11935\"[112-213]TPTHR11935
PTHR11935:SF8\"[112-213]TPTHR11935:SF8
SSF56281\"[1-213]TSSF56281


","BeTs to 12 clades of COG0491COG name: Zn-dependent hydrolases, including glyoxylasesFunctional Class: RThe phylogenetic pattern of COG0491 is AMtKYQVCEBRHuj-------Number of proteins in this genome belonging to this COG is 2","***** BP01940 (PROTEIN HYDROLASE II GLYOXALA) with a combined E-value of 9.5e-19. BP01940A 55-66 BP01940B 134-144 BP01940C 152-165 BP01940D 198-214","Residues 129-207 are 46% similar to a (PROTEIN HYDROLASE GLYOXALASE II HYDROXYACYLGLUTATHIONE) protein domain (PD001940) which is seen in YCBL_ECOLI.","","Thu Jun 14 11:27:02 MDT 2001","","Thu Jun 14 11:27:02 MDT 2001","Thu Jun 14 11:27:02 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:27:02 MDT 2001","Thu Jun 14 11:27:02 MDT 2001","","","Fri Feb 23 15:20:24 MST 2001","Fri Jun 22 16:38:10 MDT 2001","Fri Feb 23 15:05:27 MST 2001","Fri Jun 22 16:38:10 MDT 2001","Fri Jun 22 16:38:10 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 5-201 are 28% similar to PG1373, a conserved hypothetical protein.","Fri Jun 22 16:38:10 MDT 2001","Fri Feb 23 15:05:27 MST 2001","-47% similar to PDB:2GCU X-Ray Structure of Gene Product from Arabidopsis Thaliana At1g53580 (E_value = 1.2E_15);-48% similar to PDB:1XM8 X-RAY STRUCTURE OF GLYOXALASE II FROM ARABIDOPSIS THALIANA GENE AT2G31350 (E_value = 6.0E_15);-45% similar to PDB:1QH3 HUMAN GLYOXALASE II WITH CACODYLATE AND ACETATE IONS PRESENT IN THE ACTIVE SITE (E_value = 4.5E_10);-45% similar to PDB:1QH5 HUMAN GLYOXALASE II WITH S-(N-HYDROXY-N-BROMOPHENYLCARBAMOYL)GLUTATHIONE (E_value = 4.5E_10);","","","Residues 15 to 197 (E-value = 3.2e-33) place PG1147 in the Lactamase_B family which is described as Metallo-beta-lactamase superfamily (PF00753)","Fri Jun 22 16:38:10 MDT 2001","34541001","","","","","","1","","","PG1306" "PG1148","1387942","1387280","663","ATGCAGGAGATACCCGAAAAGCCGCTGTCCCAACCGGCAGGTACCGAGATCATCGAGAAATACTTCCCCCACTTGTCCGAACGGCAACGCGAACAATTCGAGCAAATGGGAGGGCTGTACACGCATTGGAATGCCCTCATCAATGTCATTTCCCGAAAGGATATAGACAATTTGTATCTGCACCATGTGTTGCATTCTTTGGGGATAGCTCGCATGCTGAACTTCAAACCCGGCACAAGTGTATTGGATTTGGGTACGGGTGGAGGTTTCCCCGGTATTCCACTGGCGATTTTGTTCCCTCAAGTCTCTTTCCTGCTGGTGGACAGCATCGGCAAAAAGGTGAAAGTGGCTTCGGCCGTAGCTGAAGCATTGGGGCTTGACAATGTGCGCACTATGCACTGTCGGGCAGAAAGCATAGGTGAGAAATTCGACTTCATAGTCAGCCGTGCAGTAATGAAGCTGAGCGAACTGGCCAAGATCTGCAGGAAACTCATCCGGCGTGAAGATCAGCAAAATGCGCTCCCGAACGGGCTTATCTGTCTCAAGGGTGGCGAGCTTCAGCACGAGATACTGCCATTCCGGAACAAGGCAATGACAGAGGAGCTATGGCCGACCTTCGAAGAAGAGTATTTCAAAACAAAAAAAGTGGTCTACTTACCTCTA","8.00","2.55","24997","MQEIPEKPLSQPAGTEIIEKYFPHLSERQREQFEQMGGLYTHWNALINVISRKDIDNLYLHHVLHSLGIARMLNFKPGTSVLDLGTGGGFPGIPLAILFPQVSFLLVDSIGKKVKVASAVAEALGLDNVRTMHCRAESIGEKFDFIVSRAVMKLSELAKICRKLIRREDQQNALPNGLICLKGGELQHEILPFRNKAMTEELWPTFEEEYFKTKKVVYLPL","1387951 1387280","TIGR ID: PG1307","glucose inhibited division protein B (glucose-inhibited division protein B)","Cytoplasm","Numerous significant hits to glucose inhibited division protein in gapped BLAST; e.g. residues 25-188 are 32% similar to sp|P25813|GIDB_BACSU glucose-inhibited division protein B of Bacillus subtilis, residues 25-190 are 32% similar to gb|AAK05441.1|AE006366_10 glucose-inhibited division protein of Lactococcus lactis subsp. lactis, residues 25-168 are 34% similar to dbj|BAB07779.1| glucose-inhibited division protein of Bacillus halodurans.","
InterPro
IPR003682
Family
Glucose inhibited division protein
PD004441\"[43-106]TGidB
PF02527\"[29-218]TGidB
TIGR00138\"[30-220]TgidB
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.150\"[8-219]TG3DSA:3.40.50.150
PTHR10108\"[69-156]TPTHR10108
SSF53335\"[10-210]TSSF53335


","BeTs to 11 clades of COG0357COG name: Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell divisionFunctional Class: MThe phylogenetic pattern of COG0357 is -----qvcebrhujgpol--xNumber of proteins in this genome belonging to this COG is 1","***** BP04441 (PROTEIN GLUCOSE INHIBITED) with a combined E-value of 1e-29. BP04441A 43-67 BP04441B 82-99 BP04441C 105-137 BP04441D 143-176","Residues 33-190 are 31% similar to a (PROTEIN GLUCOSE INHIBITED DIVISION B GIDB-LIKE) protein domain (PD004441) which is seen in GIDB_BACSU.","","Thu Jun 14 11:27:12 MDT 2001","","Thu Jun 14 11:27:12 MDT 2001","Thu Jun 14 11:27:12 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:27:12 MDT 2001","Thu Jun 14 11:27:12 MDT 2001","","","Mon May 7 18:10:41 MDT 2001","Fri Jun 22 16:44:18 MDT 2001","Fri Feb 23 16:14:47 MST 2001","Fri Jun 22 16:44:18 MDT 2001","Fri Jun 22 16:44:18 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Feb 23 16:14:47 MST 2001","-51% similar to PDB:1XDZ Crystal Structure of Gram_Positive Bacillus subtilis Glucose inhibited Division protein B (gidB), Structural genomics, MCSG (E_value = 2.0E_21);-48% similar to PDB:1JSX Crystal Structure of the Escherichia coli Glucose-Inhibited Division Protein B (GidB) (E_value = 9.8E_16);","","","Residues 29 to 218 (E-value = 7.8e-30) place PG1148 in the GidB family which is described as Glucose inhibited division protein (PF02527)","Fri Jun 22 16:44:18 MDT 2001","34541002","","","Ogasawara,N. and Yoshikawa,H. 1992. Genes and their organization in the replication origin region of the bacterial chromosome. Mol. Microbiol. 6 (5): 629-634. PubMed: 1552862. ","","Thu Mar 15 10:06:23 MST 2001","1","","","PG1307" "PG1149","1388821","1387979","843","ATGAATCTATCGGGATTACAATCTTTCACTATGATGAAATCCATGCGCAGCGTGCTGTTGCTACTCTTTCCATTGTCTTTGATCACTGCTTTGGGCTGTAGCAATAACAAAGCTGCCGAATCGAAGTCTGTCTCTTTCGATTCGGCCTATCTCGAACGCTACATCCCTCTGCGGGCAGACATAGATACGCCATCGCTGCATGTGATGATCAGCTACGTCTATCCTTCGGGAGATGATATGCTCACAGAGATTTTCAACGGTTTGCTCTTCGGCGACAGCCTGATGGATTCCTCTTCGCCGGAGAATGCCATGGAAGGCTATGCACAGATGCTGGGAGAAGACTATCGCTCTAACAATGCCGAAGCCAATCTGCAAGGGCTTCCTTCTGACCTTTTGGACTATATCTACAAGCAGGAAAATACCATCGCTTATTGCGATACGGGATTGATCTCCACGCGCATCAATACATATACTTACGAAGGCGGTGCACATACGGAGAATACAGTCCGGTTTGCCAACATCCTTCGCACCACCGGCAAGGTGCTCGAAGAGCGAGATATATTCAAGATCGACTATGCGGAAAGGCTGTCCGCACTCATCATAGGACAATTGGTGCACGATTTCGGCAAGACCACACCTGCCGAATTGGATGCAATAGGTTTCTTCAACGCAGAAGAAATACAGCCCAATGGCAATTTTATGATCGATGACAAAGGTCTCACATACTGTTTCAATGAGTATCAGATAGCTGCTTATGCCAGAGGTGCTGTCTATGTCCGTCTCGGATATGACGTATTGGCTCCTTTGCTAAGGGATGATTCCCCACTAAAGCGTTACTTGCCG","4.40","-14.41","31382","MNLSGLQSFTMMKSMRSVLLLLFPLSLITALGCSNNKAAESKSVSFDSAYLERYIPLRADIDTPSLHVMISYVYPSGDDMLTEIFNGLLFGDSLMDSSSPENAMEGYAQMLGEDYRSNNAEANLQGLPSDLLDYIYKQENTIAYCDTGLISTRINTYTYEGGAHTENTVRFANILRTTGKVLEERDIFKIDYAERLSALIIGQLVHDFGKTTPAELDAIGFFNAEEIQPNGNFMIDDKGLTYCFNEYQIAAYARGAVYVRLGYDVLAPLLRDDSPLKRYLP","1388821 1387979","TIGR ID: PG1308","conserved hypothetical protein","Cytoplasm","This sequence corresponds to gi:34397318 in Genbank.Its nearest neighbor in the NR database is gi:29346554 from Bacteroides thetaiotaomicron VPI-5482.","
noIPR
unintegrated
unintegrated
signalp\"[1-30]?signal-peptide
tmhmm\"[15-35]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon Mar 7 10:57:57 2005","Mon Mar 7 10:57:57 2005","Fri Feb 23 16:20:37 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 12-275 are 30% similar to PG0426, a hypothetical protein.","Mon Feb 26 08:59:55 MST 2001","Fri Feb 23 16:20:37 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Fri Feb 23 16:20:37 MST 2001","34541003","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Mon Mar 7 10:57:57 2005","","1","","","PG1308" "PG1150","1389227","1389886","660","ATGCAGAGAGAAAAAGATAGCCTTATCGTTGTATCCGGCGGAATGGACAGCGTTACGCTGATGTACGAGAAGAGAGCCTCCATCGCTTTGGCTCTCAGTTTTGACTATGGTTCCAAGCATAATGCCCGTGAATTGTCTTTTGCGCGTCTCCATGCAGAGCGTTTGGGTGTGGAGCATCTGATTATCCCCCTCGATTTTATCGGGCAGTATTTTCAGAGTGATTTGTTGCTTAGTGGAGGAGATATTCCGGAGGGCCGATACGACGAGGAAAATATGAAGAGTACGGTAGTGCCCTTTCGTAACGGCATCATGCTGGCGGTAGCTGCGGGGTTAGCCGAGAGCAGGGGATTGAGGCGGATTTATATCGCCAATCACTTCGGCGACCATGCCATATACCCCGATTGTCGTGCCTCATTTATTCGTCCGATGACCGAAGCTGTTCGGTGCGGTACCACGAACGGCGTGCTCATAGAAGCACCTTATACTGATATTACTAAGACAGATATTGCACGGATAGGAGCTTCATTGGGTATAGACTATGCCGAGACTTGGAGTTGCTACAAGGGGGGGGTGTTTCATTGTGGCGTTTGTGGTACCTGTGTAGAGCGCAGGGAGGCTTTGCACGATGCCGGCATTCCGGATGCCACCGAGTACGAAGGT","5.40","-6.59","24174","MQREKDSLIVVSGGMDSVTLMYEKRASIALALSFDYGSKHNARELSFARLHAERLGVEHLIIPLDFIGQYFQSDLLLSGGDIPEGRYDEENMKSTVVPFRNGIMLAVAAGLAESRGLRRIYIANHFGDHAIYPDCRASFIRPMTEAVRCGTTNGVLIEAPYTDITKTDIARIGASLGIDYAETWSCYKGGVFHCGVCGTCVERREALHDAGIPDATEYEG","1389167 1389886","TIGR ID: PG1310","regulatory protein (probable succinoglycan biosynthesis regulator)","Cytoplasm","Numerous significant hits to regulatory proteins in gapped BLAST; e.g. residues 7-214 are 38% similar to gb|AAB90792.1| succinoglycan biosynthesis regulator (exsB) of Archaeoglobus fulgidus, residues 7-188 are 44% similar to emb|CAA12530.1| ExsB protein of Sinorhizobium meliloti, residues 1-219 are 37% similar to emb|CAC12080.1| transcription regulator (exsB) related protein of Thermoplasma acidophilum.","
InterPro
IPR004479
Family
ExsB
PIRSF006293\"[5-220]TExsB
PF06508\"[6-177]TExsB
TIGR00364\"[7-203]TExsB
noIPR
unintegrated
unintegrated
SSF52402\"[5-186]TSSF52402


","BeTs to 10 clades of COG0603COG name: Predicted ATPase (PP-loop superfamily), confers aluminum resistanceFunctional Class: RThe phylogenetic pattern of COG0603 is amtk-Q-ceb-huj------xNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 100-206 are 46% similar to a (PROTEIN EXSB CONSERVED PUTATIVE) protein domain (PD005627) which is seen in O29807_ARCFU.Residues 7-98 are 45% similar to a (PROTEIN SYNTHETASE LIGASE BIOSYNTHESIS PROBABLE) protein domain (PD000352) which is seen in Q52925_BBBBB.","","Thu Jun 14 11:33:10 MDT 2001","","Thu Jun 14 11:33:10 MDT 2001","Thu Jun 14 11:33:10 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:33:10 MDT 2001","Thu Jun 14 11:33:10 MDT 2001","","","Mon Feb 26 09:35:52 MST 2001","Fri Jun 22 16:46:35 MDT 2001","Mon Feb 26 09:35:52 MST 2001","","Fri Jun 22 16:46:35 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Feb 26 09:35:52 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 72 to 143 (E-value = 1.8e-17) place PG1150 in the ExsB family which is described as ExsB (PF06508)","Fri Jun 22 16:46:35 MDT 2001","34541004","","","","","","1","","","PG1310" "PG1151","1389852","1390415","564","ATGCCGGCATTCCGGATGCCACCGAGTACGAAGGTTGAGTATACTTCATTCGGCACGAAGTTATCAGGCGCGATGAAGAAAATAGGGCTGCTATCCGATACGCATGGCTATATCGACGAAAAGTACCGGATACATTTCGCCGATTGCGATGAGATTTGGCATGCCGGTGACATCGGCTCTGTAACGGTAGCGGACTATTTGTCGGGTTTGGCTCCGCTGCGTGCTGTCTATGGCAATATAGACGGGCAAGACATTCGTCTGCAGTATCCCGAAGTTCTGCGCTTTTGTGTGGAAGAGGTGAAAGTGTTTATGACGCATATCGGGGGATACCCCGGTCGGTACGAACCTCGTATATATCGAATGCTCGTGCAGAACCCACCTCGTCTTTTTGTCTGTGGGCATAGTCATATTCTCAAAGCTATGTACGATAAGAAGTTGGATATGCTGCATCTGAATCCCGGAGCTGCAGGTAAGTATGGTTTTCATGCTGTTCGTACTCTGATGCGCTTCGTGATCGATGGGCGAGATATACGGGATTTACAGGTGATAGAATTGGCCGATCGA","8.40","3.78","21380","MPAFRMPPSTKVEYTSFGTKLSGAMKKIGLLSDTHGYIDEKYRIHFADCDEIWHAGDIGSVTVADYLSGLAPLRAVYGNIDGQDIRLQYPEVLRFCVEEVKVFMTHIGGYPGRYEPRIYRMLVQNPPRLFVCGHSHILKAMYDKKLDMLHLNPGAAGKYGFHAVRTLMRFVIDGRDIRDLQVIELADR","1389852 1390415","TIGR ID: PG1311","conserved hypothetical protein","Cytoplasm","A few weak hits in gapped BLAST; e.g. residues 27-161 are 33% similar to gb|AAG03740.1|AE004473_2 conserved hypothetical protein of Pseudomonas aeruginosa, residues 28-185 are 26% similar to gb|AAF91268.1|AF230199_10 conserved hypothetical protein of Methanococcus maripaludis, residues 28-155 are 30% similar to gb|AAB86240.1| conserved protein of Methanothermobacter thermautotrophicus.","
InterPro
IPR000979
Family
Protein of unknown function UPF0025
PIRSF000886\"[26-188]TVPS29
TIGR00040\"[26-180]TyfcE
InterPro
IPR004843
Domain
Metallophosphoesterase
PF00149\"[26-138]TMetallophos
noIPR
unintegrated
unintegrated
G3DSA:3.60.21.10\"[27-181]TG3DSA:3.60.21.10
SSF56300\"[26-182]TSSF56300


","BeTs to 5 clades of COG0622COG name: Predicted phosphoesteraseFunctional Class: RThe phylogenetic pattern of COG0622 is AMTKy-V-eb----gp-l---Number of proteins in this genome belonging to this COG is 1","***** IPB000979 (Uncharacterized protein family UPF0025) with a combined E-value of 8e-11. IPB000979A 26-36 IPB000979B 47-57 IPB000979C 76-81 IPB000979D 118-158","Residues 28-155 are 30% similar to a (PROTEIN CONSERVED LONG MG207) protein domain (PD006202) which is seen in YH74_METTH.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon Feb 26 09:58:58 MST 2001","Mon Feb 26 09:58:58 MST 2001","Mon Feb 26 09:58:58 MST 2001","Mon Feb 26 09:58:58 MST 2001","Mon Feb 26 09:58:58 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Feb 26 09:58:58 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 26 to 138 (E-value = 3.2e-07) place PG1151 in the Metallophos family which is described as Calcineurin-like phosphoesterase (PF00149)","Mon Feb 26 09:58:58 MST 2001","34541005","","","","","","1","","","PG1311" "PG1152","1390429","1391613","1185","ATGAAACATTTCATTCTCAAAGCTTGCATTTTCTTCTCCCTGCTGTTAGGCGGATGGATATCCTCTTCGTGTCGTGGTGGAGCAACCCCTTCTTCTACCAGTGGGGATTCAGCTCCTGCTAGGATCGATACGCTGGAAATTAAATTGCTCTTCGCCGGAGATATCATGACGCATGGCCCTCAGATAGAAAGTGCAAAGTGCGAAGGTGGGCGCGTGTACGACTTTTCCTCCTCTTTTGATACTTTGGCATCAAGAATAGGGGCTGCCGATCTTGCCATCGGCAATCTGGAGACCACCTTTGCAGGAGCCCCCTACAGCGGATACCCCACCTTCTCTTCTCCTGACGCTATGGGTGAGGCTCTTAAAAATGCCGGTTTCGATGTGCTGACTACTGCCAACAATCATACTGCCGATAAGGGAAAAAAGGGGATTATACGTACTCTCGATATGCTGGATAGTCTGGGTATAGCCCATACAGGCAGCTATCGAGATATTTTCGATCGGGATAAAATGACTCCTCTTATCCTTGAAGTAAAAGGTGTACGCATAGCCATACTGGCCTATACTTATGGTACAAATGGAATGCCTGTACCGGCTCCTACCTGGGTGGATCCTATCGATACGGTCATGATAAAGAAGGATTTGCTGCGAGCGGATTCCTTAGGTGCGGACTACCGCATCGTTCAGATTCATTGGGGAATAGAATACAGAAAGGAGCCTGATAGCGAACAACTGGAGCTTGCACGCAAACTTCACCGCTATGGTGCCGATGCCATCATCGGAAGCCATCCGCATGTGGTGCAAGGCTCCCAATGGCTGAAAAGCGATTCCAAAACATCTTTCGTAATCTATTCGATGGGCAATTTTATAAGCAACCAGAGGAAGCCGGCAGCCACCAGAGGGGGGATGTTGCTATCGCTTACCCTTCGCAAAGTGGGTGATCGGATTACGACCCATCCCGACTATCAATACGTTTTTGTCAATAAGCGCACCCCACAGGGTAAGAGAGTTTATCGCTTGCTGCCTGTGGATCCTTTTTCTTCAGATACTCTGCCCTCTCTCCCTCCGGAGGAGCAACGGGACTACAAGGAATTTGCCAAATATTACCAAATGATACCTCTCGTTCTTATCGAACGAGAGGACAACCGAATTAGAAATCGGCTACAAGTATCTCAGAGGGCTTTC","9.40","7.04","43839","MKHFILKACIFFSLLLGGWISSSCRGGATPSSTSGDSAPARIDTLEIKLLFAGDIMTHGPQIESAKCEGGRVYDFSSSFDTLASRIGAADLAIGNLETTFAGAPYSGYPTFSSPDAMGEALKNAGFDVLTTANNHTADKGKKGIIRTLDMLDSLGIAHTGSYRDIFDRDKMTPLILEVKGVRIAILAYTYGTNGMPVPAPTWVDPIDTVMIKKDLLRADSLGADYRIVQIHWGIEYRKEPDSEQLELARKLHRYGADAIIGSHPHVVQGSQWLKSDSKTSFVIYSMGNFISNQRKPAATRGGMLLSLTLRKVGDRITTHPDYQYVFVNKRTPQGKRVYRLLPVDPFSSDTLPSLPPEEQRDYKEFAKYYQMIPLVLIEREDNRIRNRLQVSQRAF","1390429 1391613","TIGR ID: PG1312","conserved hypothetical protein (possible encapsulation-related protein)","Periplasm, Cytoplasm","Several significant hits in gapped BLAST; e.g. residues 38-293 are 39% similar to emb|CAB63190.1| putative lipoprotein of Streptomyces coelicolor A3(2), residues 31-290 are 29% similar to emb|CAB40617.1| related sequence M24150 of Bacillus cereus, residues 112-316 are 30% similar to gb|AAA22288.1| 46 Kd encapsulation protein CapA of Bacillus anthracis.","
noIPR
unintegrated
unintegrated
PS51257\"[1-24]TPROKAR_LIPOPROTEIN
SSF56300\"[43-267]TSSF56300


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 112-316 are 30% similar to a (PROTEIN PLASMID CAPA Y4SH) protein domain (PD010034) which is seen in CAPA_BACAN.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon May 7 18:35:04 MDT 2001","Mon Feb 26 10:28:52 MST 2001","Mon Feb 26 10:28:52 MST 2001","","Mon Feb 26 10:28:52 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Feb 26 10:28:52 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon May 7 18:34:21 MDT 2001","34541006","","","Makino,S., Uchida,I., Terakado,N., Sasakawa,C. and Yoshikawa,M. 1989. Molecular characterization and protein analysis of the cap region, which is essential for encapsulation in Bacillus anthracis. J. Bacteriol. 171 (2): 722-730. PubMed: 2536679.","","Mon Feb 26 10:28:52 MST 2001","1","","","PG1312" "PG1153","1392425","1394080","1656","ATGAAAAGAAAATTCGGTTTTCTCTGTGCTGTGCTGCTGGGGATCGCTGTGGCGACTCCTAAGGCAGAGGCTTGCACCAATCTGATCGTAGCCAAAGGGGCTTCGACTGACGGTTCGGTAATCATCAGCTATTCGGCAGATTCGCATACGCTCTATGGGGAGTTGTATCACTGGGCTGCTCGTGATTGGGCTGAAGGAACAATGCGCCCAATTATCGAATGGGACACGAACAAACCACTTGGATTCATTCCCGAAGTAGCGCATACCTACAATGTCATCGGTAATGTGAACGAACACCAAGTGGCTATTGCCGAGACGACATGGGGCGGACGTCCCGAATTGGCCGAAAGTGATGGTATCATGGACTATGGCAGCCTGATCTATGTGGCTCTCCAGCGTTCTAAGACAGCTCGTGAGGCTATAGACGTCATAACCAATCTGGTAAAGGAATACGGCTACCATAGCAGTGGCGAAAGTTTTAGTGTTGCCGATAAGAACGAAGTTTGGATTCTGGAGATGATCGGCAAGGGTAAGGGGCGCAAAGGTGCTGTGTGGGCAGCTGTGCGCATTCCGGACAATGCTATTAGTGCACATGCCAATCAAGCTCGCATCCAGCAGATCGATTTCAAGAGTAAAGATTATCTCTATTCTCCCGATGTCGTTTCATTTGCCCGTGAGATGGGATTCTTCCAAGGAACAGACAAGGATTTTAGCTTCCAAGAAGCATATAACCCTTATACCGAAGGTGGTCTTCGTGGTTGTGAAGCTCGTGTATGGGCTTTCTTCAATAAGTTCAATTCGCATATGGGTAAGTATGAAGCTTTTATACGGAATCAGAGCAAGGATAAAATGCCTCTCTATATTGTTCCGGATCGCAAGCTCTCTGTCGCTGATGTTCGCGATATGATGCGTGATCACTACGAAGGTACTTCCCTATGTATGACGAACGATCCGGGTGCCGGCCCTTATAAAGTACCCTACCGTTGGCGTCCGATGAGCTTCGAAGTGGATGGCAAGGAGTACGTTAATGAACGTGCCATTGCCACTCAGCAAACCGGATTTGTTTTCGTAGCCCAGTTGCGTAATTGGCTCCCCGATGCCATTGGCGGTGTTAATTGGTTTGGCGTGGACGATGCCGATATGGCCGTTATGAGTCCGATCTATTGTTCCACAACGCGTGTGCCGGAGTGCTTCCGTCAGGGTAATGGCGATATGATGCACTTTTCTTGGACTTCGGCTTTCTGGATCCACAATTGGGTGGCTAATATGGCATATCACCGCTATGATCAGATGATAGCCGATATTCGCCCTGTACAGCGTGAACTCGAAGGAGCTTGTGACCGCATACTTCCGACTATCGACAAGCAAGCACAAGAGCTATACGCTCTGGATCCGGCCAAAGCTGTAGCATTCCTGACAAATTACAGCAACGAAGAGGCAGAGAAAGCAACTGCCCGTTGGAAGCGTCTTGGGGAATATCTGATGGTAAAGTACATGGATGGCAATCGCAAGAAAGAGGAGAGTGGCCGATTCAAGACAAATGGATACGGTTTCAGTGCCATGCCTGATTTCCCCGGTTATAGTCAGGAATACTATCGACAGATAGCAACATCTGAAGCGGCCGAACGCTTGCTCAAGAAAGAAAAGGAACAACAT","6.40","-4.39","62613","MKRKFGFLCAVLLGIAVATPKAEACTNLIVAKGASTDGSVIISYSADSHTLYGELYHWAARDWAEGTMRPIIEWDTNKPLGFIPEVAHTYNVIGNVNEHQVAIAETTWGGRPELAESDGIMDYGSLIYVALQRSKTAREAIDVITNLVKEYGYHSSGESFSVADKNEVWILEMIGKGKGRKGAVWAAVRIPDNAISAHANQARIQQIDFKSKDYLYSPDVVSFAREMGFFQGTDKDFSFQEAYNPYTEGGLRGCEARVWAFFNKFNSHMGKYEAFIRNQSKDKMPLYIVPDRKLSVADVRDMMRDHYEGTSLCMTNDPGAGPYKVPYRWRPMSFEVDGKEYVNERAIATQQTGFVFVAQLRNWLPDAIGGVNWFGVDDADMAVMSPIYCSTTRVPECFRQGNGDMMHFSWTSAFWIHNWVANMAYHRYDQMIADIRPVQRELEGACDRILPTIDKQAQELYALDPAKAVAFLTNYSNEEAEKATARWKRLGEYLMVKYMDGNRKKEESGRFKTNGYGFSAMPDFPGYSQEYYRQIATSEAAERLLKKEKEQH","1392413 1394080","TIGR ID: PG1313","dipeptidase","Periplasm, Cytoplasm","Several significant hits to dipeptidase in gapped BLAST; e.g. residues 3-388 are 27% similar to gb|AAC33721.1| dipeptidase homolog of Salmonella enterica subsp. enterica serovar Dublin, residues 24-480 are 26% similar to emb|CAA66893.1| putative; orf1 of Lactobacillus sakei, residues 24-436 are 24% similar to gb|AAK05656.1|AE006386_7 dipeptidase of Lactococcus lactis subsp. lactis.This sequence is similar to BT1549.","
InterPro
IPR005322
Family
Peptidase C69, dipeptidase A
PF03577\"[24-441]TPeptidase_C69
noIPR
unintegrated
unintegrated
PTHR12994\"[58-443]TPTHR12994
PTHR12994:SF3\"[58-443]TPTHR12994:SF3


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 97-245 are 28% similar to a (HYPOTHETICAL PROTEIN KIAA0193) protein domain (PD134569) which is seen in Y193_HUMAN.Residues 24-388 are 27% similar to a (DIPEPTIDASE HOMOLOG PEPDA GENE CLUSTER) protein domain (PD042986) which is seen in O85304_SALDU.","","Thu Jun 14 11:33:21 MDT 2001","","Thu Jun 14 11:33:21 MDT 2001","Thu Jun 14 11:33:21 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:33:21 MDT 2001","Thu Jun 14 11:33:21 MDT 2001","","","Mon Feb 26 16:13:24 MST 2001","Thu Dec 4 15:49:55 2003","Mon Feb 26 16:13:24 MST 2001","","Fri Jun 22 16:49:26 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Feb 26 16:13:24 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 24 to 441 (E-value = 1.3e-99) place PG1153 in the Peptidase_U34 family which is described as Peptidase family U34 (PF03577)","Fri Jun 22 16:49:26 MDT 2001","34541007","","","Dudley,E.G., Husgen,A.C., He,W. and Steele,J.L. 1996. Sequencing, distribution, and inactivation of the dipeptidase A gene (pepDA) from Lactobacillus helveticus CNRZ32. J. Bacteriol. 178 (3): 701-704. PubMed: 8550503.Wood,M.W., Jones,M.A., Watson,P.R., Hedges,S., Wallis,T.S. andGalyov,E.E. Identification of a pathogenicity island required for Salmonella enteropathogenicity. Unpublished. ","","Fri Mar 23 14:20:34 MST 2001","1","","","PG1313" "PG1154","1395561","1394458","1104","ATGAATACAATAGGTAAGTTATTCCGGCTGACTACATTCGGAGAATCCCACGGCAAAGCTATCGGAGGTGTCATCGACGGCTGTCCGGCAGGGCTTTTTGTAGACATGGAAACCATCGAGCGAGAGTTACTTCGTCGTCGCCCAGGGCAGTCACATTATACTTCTCCCCGGCAGGAGAGTGACATGGTACAGTTTATCTCCGGCCTATTTCGGGGAGAAACCACCGGTGCTCCTATTGCTTTCATGATAGACAATAAAGATGTACGTTCTGCTGACTACGACAGTCTCAGCTCCATCTTTCGTCCGGGACATGCCGACTATACATATTTCCATAAATATGGTATCCGTGATACTCGTGGTGGGGGACGTTCTTCTGCCCGCGAAACGGCTGTCCGCGTAGTGGCAGGAGCTGTTGCCAAGCAACTCCTGGCTCCATTGGGAATCCGATGTACAGCCTATACGTCACAGATTGGCCCTGTATGTATACCCCAAGAAAATGCCAAAGAATATAGCCCTGAAGAAGTAGAGTCTTCCCCCATTCGCTGCCCTGATCCTAATGCTTCCGGATTAATGGAAGCTGTAATAGAAACGGCAAAGAAAGAATCTGACAGCGTGGGGGGTATAGTCGATTGCCAAATAAGTGACGTTCCGGTTGGTTGGGGTGAACCTCTTTATGGCAAACTGCATGCTGCTCTTGGTGCAGCCATGCTAAGCATCAATGCAGCCAAGGGTTTTGAAGTTGGGGACGGATTTGCCCTGGCATCCATGCGTGGCTCCGAAGCAAATGATCAGATGGTCGCTGCAGAAGATGGTGGCATCTCGTTTCTTTCCAATCATTCAGGGGGTATTAGCGGAGGTATCAGCACCGGTCAGGATATTCGTTTCCGCGTAGCATTCAAACCGACTCCTACCATTGGGCAAAAACAGCAGACTGTCAACGAACAGGGAGAAAGCATATCCCTCTCAGCTGTGGGAAGGCATGATCCTTGTGTGGTGCCACGTGCCGTACCGGTGGTAGAAGCCATGACCTGGTTGACATTAGCAGATGCCTATTTGGCCTCCCGATCAGGGCGTTGTGCACATTCCAGTCTCAAGTGCAACGGT","6.30","-3.43","39094","MNTIGKLFRLTTFGESHGKAIGGVIDGCPAGLFVDMETIERELLRRRPGQSHYTSPRQESDMVQFISGLFRGETTGAPIAFMIDNKDVRSADYDSLSSIFRPGHADYTYFHKYGIRDTRGGGRSSARETAVRVVAGAVAKQLLAPLGIRCTAYTSQIGPVCIPQENAKEYSPEEVESSPIRCPDPNASGLMEAVIETAKKESDSVGGIVDCQISDVPVGWGEPLYGKLHAALGAAMLSINAAKGFEVGDGFALASMRGSEANDQMVAAEDGGISFLSNHSGGISGGISTGQDIRFRVAFKPTPTIGQKQQTVNEQGESISLSAVGRHDPCVVPRAVPVVEAMTWLTLADAYLASRSGRCAHSSLKCNG","1395618 1394458","Chorismate synthase (EC 4.6.1.4) catalyzes the last of the seven steps in the shikimate pathway which is used in prokaryotes, fungi and plants for the biosynthesis of aromatic amino acids. It catalyzes the 1,4-trans elimination of the phosphate group from 5-enolpyruvylshikimate-3-phosphate (EPSP) to form chorismate which can then be used in phenylalanine, tyrosine or tryptophanbiosynthesis. Chorismate synthase requires the presence of a reduced flavin mononucleotide (FMNH2 or FADH2) for its activity.See Prosite PDOC00628.TIGR ID: PG1314","chorismate synthase (5-enolpyruvylshikimate-3-phosphate phosphorylase)","Cytoplasm","Numerous hits to corismate synthases; e.g. residues 20-371 are 50% similar to chorismate synthase (AE001058) of Archaeoglobus fulgidus, residues 1-349 are 48% similar to chorismate synthase (U67559) of Methanococcus jannaschii, residues 2-356 are 48% similar to chorismate synthase (AE000321) of E. coli, residues 2-342 are 47% similar to chorismate synthase (AE001310) of Chlamydia trachomatis.This sequence is similar to BT2084.","
InterPro
IPR000453
Family
Chorismate synthase
PD002941\"[36-349]TChorismate_synth
PTHR21085\"[1-357]TChorismate_synth
PF01264\"[8-355]TChorismate_synt
TIGR00033\"[8-358]TaroC
PS00787\"[14-29]TCHORISMATE_SYNTHASE_1
PS00788\"[122-138]TCHORISMATE_SYNTHASE_2
PS00789\"[326-342]TCHORISMATE_SYNTHASE_3
noIPR
unintegrated
unintegrated
SSF103263\"[1-367]TSSF103263


","BeTs to 12 clades of COG0082COG name: Chorismate synthaseFunctional Class: EThe phylogenetic pattern of COG0082 is amt-yqvcebrhuj----in-Number of proteins in this genome belonging to this COG is 1","***** IPB000453 (Chorismate synthase) with a combined E-value of 5.6e-127. IPB000453A 8-41 IPB000453B 42-87 IPB000453C 120-143 IPB000453D 202-218 IPB000453E 219-265 IPB000453F 277-305 IPB000453G 324-352","Residues 2-352 are 50% similar to a (CHORISMATE SYNTHASE PHOSPHOLYASE LYASE) protein domain (PD002941) which is seen in O29587_ARCFU.","","Thu Jun 14 11:33:56 MDT 2001","","Thu Jun 14 11:33:56 MDT 2001","Thu Jun 14 11:33:56 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:33:56 MDT 2001","Thu Jun 14 11:33:56 MDT 2001","","Fri Jun 22 16:53:17 MDT 2001","Thu Mar 15 10:17:00 MST 2001","Wed Dec 10 14:31:55 2003","Wed Feb 21 15:22:39 MST 2001","Fri Jun 22 16:53:17 MDT 2001","Fri Jun 22 16:53:17 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Fri Apr 7 14:40:38 MDT 2000","Thu Mar 15 10:17:00 MST 2001","-61% similar to PDB:1R52 Crystal structure of the bifunctional chorismate synthase from Saccharomyces cerevisiae (E_value = 4.7E_81);-61% similar to PDB:1R53 Crystal structure of the bifunctional chorismate synthase from Saccharomyces cerevisiae (E_value = 4.7E_81);-58% similar to PDB:1UM0 Crystal structure of chorismate synthase complexed with FMN (E_value = 1.1E_77);-58% similar to PDB:1UMF crystal structure of chorismate synthase (E_value = 1.1E_77);-59% similar to PDB:1SQ1 Crystal Structure of the Chorismate Synthase from Campylobacter jejuni, Northeast Structural Genomics Target BR19 (E_value = 3.3E_74);","","","Residues 8 to 355 (E-value = 2.5e-185) place PG1154 in the Chorismate_synt family which is described as Chorismate synthase (PF01264)","Fri Jun 22 16:53:17 MDT 2001","34541008","","","Bornemann S, Lowe DJ, Thorneley RN. Escherichia coli chorismate synthase. Biochem Soc Trans 1996 Feb;24(1):84-8. PubMed: 8674765. Schmidt,J., Bubunenko,M. and Subramanian,A.R. 1993. A novel operon organization involving the genes for chorismate synthase (aromatic biosynthesis pathway) and ribosomal GTPase center proteins (L11, L1, L10, L12: rplKAJL) in cyanobacterium Synechocystis PCC 6803. J. Biol. Chem. 268 (36): 27447-27457. PubMed: 7505271.","","Thu Mar 15 10:21:24 MST 2001","1","","","PG1314" "PG1155","1396283","1395714","570","ATGAGTATTTCAGCAAATAAATTTGTGACCTGTAGCTACGACTTGTATGTAGGGTTGGCAGAGGAGAAAGAATTGATGGAGCAGGCCACGGCCGAAAGGCCGTTGTGCTATATACATGGTATGGGTATGATGTTGCCCGAGTTCGAAAAGCATTTGTTCGGGCTGGCTGTGGGTGACAAATTCGACTTCGAGCTTAAGAGCGAAGATGCCTATGGCGAACGTCAGGAAGATGCCGTATTGGAGTTGCCCAAGGATATCTTCAAAGACGAAGAAGGCCGATTCGACTCTTCCATCGTCTACGAAGGCAATACCGTGCCGATGCGCGATGCCGAAGGTAATACCTTGCAAGGTTCTGTACTGGAAGTACGAGACGATGTAGTGGTAATGGACTTCAATCATCCTTTGGCCGGTGAGAATCTTCATTTCATCGGAGAGATCATCGAAGAGCGTGAAGCGACGGCAGAAGAGATCGAACAGTTCTTTGGAGGCCACTCCGGCTGTGGTTGCGGTTGTAGCTGCGAAAGTGAATCATCAGATGGTTGCAACTGTGGCAGCGACTGTGGCTGTCAC","4.10","-27.00","20965","MSISANKFVTCSYDLYVGLAEEKELMEQATAERPLCYIHGMGMMLPEFEKHLFGLAVGDKFDFELKSEDAYGERQEDAVLELPKDIFKDEEGRFDSSIVYEGNTVPMRDAEGNTLQGSVLEVRDDVVVMDFNHPLAGENLHFIGEIIEEREATAEEIEQFFGGHSGCGCGCSCESESSDGCNCGSDCGCH","1396283 1395714","TIGR ID: PG1315","FKBP-type peptidyl-prolyl cis-trans isomerase","Cytoplasm","Numerous significant and weak hits to FKBP-type peptidyl-propyl cis-trans isomerase in gapped BLAST; e.g. residues 1-142 are 38% similar to gb|AAF12003.1|AE002075_7 peptidyl-prolyl cis-trans isomerase, FKBP-type of Deinococcus radiodurans, residues 1-142 are 34% similar to gb|AAF95745.1| peptidyl-prolyl cis-trans isomerase, FKBP-type of Vibrio cholerae, residues 14-142 are 36% similar to gb|AAG58456.1|AE005558_9 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) of Escherichia coli O157:H7.","
InterPro
IPR001179
Domain
Peptidyl-prolyl cis-trans isomerase, FKBP-type
PTHR10516\"[9-189]TPPIase_FKBP
PS50059\"[16-85]TFKBP_PPIASE
noIPR
unintegrated
unintegrated
G3DSA:3.10.50.40\"[2-91]TG3DSA:3.10.50.40
PTHR10516:SF3\"[9-189]TPTHR10516:SF3
SSF54534\"[2-151]TSSF54534


","BeTs to 7 clades of COG1047COG name: FKBP-type peptidyl-prolyl cis-trans isomerases 2Functional Class: OThe phylogenetic pattern of COG1047 is aMtk----E--huj---l---Number of proteins in this genome belonging to this COG is 1","***** IPB001179 (FKBP-type peptidyl-prolyl cis-trans isomerase (PPIase)) with a combined E-value of 4.6e-07. IPB001179A 39-72 IPB001179B 134-146","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon Feb 26 16:44:20 MST 2001","Mon Feb 26 16:44:20 MST 2001","Mon Feb 26 16:32:40 MST 2001","Mon Feb 26 16:32:40 MST 2001","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Feb 26 16:32:40 MST 2001","-52% similar to PDB:1IX5 Solution structure of the Methanococcus thermolithotrophicus FKBP (E_value = 8.8E_12);-64% similar to PDB:1PBK HOMOLOGOUS DOMAIN OF HUMAN FKBP25 (E_value = 8.8E_12);-45% similar to PDB:1ANT BIOLOGICAL IMPLICATIONS OF A 3 ANGSTROMS STRUCTURE OF DIMERIC ANTITHROMBIN (E_value = 8.8E_12);-45% similar to PDB:1ATH THE INTACT AND CLEAVED HUMAN ANTITHROMBIN III COMPLEX AS A MODEL FOR SERPIN-PROTEINASE INTERACTIONS (E_value = 8.8E_12);-45% similar to PDB:1AZX ANTITHROMBIN/PENTASACCHARIDE COMPLEX (E_value = 8.8E_12);","","","No significant hits to the Pfam 11.0 database","Fri May 4 14:12:09 MDT 2001","34541009","","","Hottenrott,S., Schumann,T., Pluckthun,A., Fischer,G. and Rahfeld,J.U. 1997. The Escherichia coli SlyD is a metal ion-regulated peptidyl-prolyl cis/trans-isomerase. J. Biol. Chem. 272 (25): 15697-15701. PubMed: 9188461.","","Mon Feb 26 16:44:20 MST 2001","1","","","PG1315" "PG1156","1396864","1396337","528","ATGGGTACTAACGGATTTCAGCGAATGATCGAGCGACACTCGCACCACCATCTAAGCGGTATGAAGCGAATCTTTTCTCTTACTATTATATTGGCTGCTCTGCTGCCAACTCTCTCGCAGGCAGCGATGCCTCCCTATTCTGTAGCGACCAAATTTCAGGAGTCTGAACAACAAGGTCGGAAGAGGGAGTTCATGAACCAACGCAATGCTTTCTTCATCCTTGAACTGGAGCTGACGCAGGAGGAGACCGATGCTTTTCTTCCGCTGTACAACGAGCTGGACACCAAACGCTACGAGCTGTGGAAAGACGTTCGGCAAAAGCGTGCTCTGATGGAACGAAAAGCCGAATTGACGGATGCCGACATGGAGCTGATCATCAATAAGAGTTTGGACAATAAAATTGCAGAGGCACGGTTGGAAAAAGAGTACTACTATAAATTCAAACGAGTGCTGCCGATGCGAAAAGTGATGGCTCTGAAAGTTGCAGAGCGGAAATTTGCCCGTCTGTTTCTTAAGAGCAGTTATGAC","10.40","7.97","20899","MGTNGFQRMIERHSHHHLSGMKRIFSLTIILAALLPTLSQAAMPPYSVATKFQESEQQGRKREFMNQRNAFFILELELTQEETDAFLPLYNELDTKRYELWKDVRQKRALMERKAELTDADMELIINKSLDNKIAEARLEKEYYYKFKRVLPMRKVMALKVAERKFARLFLKSSYD","1396864 1396337","TIGR ID: PG1316","conserved hypothetical protein","Cytoplasm","This sequence corresponds to gi:34397325 in Genbank.Its nearest neighbor in the NR database is gi:29349757 from Bacteroides thetaiotaomicron VPI-5482.","
noIPR
unintegrated
unintegrated
signalp\"[1-41]?signal-peptide
tmhmm\"[24-44]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon Mar 7 11:30:22 2005","Mon Mar 7 11:30:22 2005","Mon Feb 26 16:46:17 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Feb 26 16:46:17 MST 2001","-51% similar to PDB:1GO4 CRYSTAL STRUCTURE OF MAD1-MAD2 REVEALS A CONSERVED MAD2 BINDING MOTIF IN MAD1 AND CDC20. (E_value = );-39% similar to PDB:2BR9 14-3-3 PROTEIN EPSILON (HUMAN) COMPLEXED TO PEPTIDE (E_value = );-51% similar to PDB:1DLC CRYSTAL STRUCTURE OF INSECTICIDAL DELTA-ENDOTOXIN FROM BACILLUS THURINGIENSIS AT 2.5 ANGSTROMS RESOLUTION (E_value = );-52% similar to PDB:2D3E Crystal structure of the C-Terminal fragment of rabbit skeletal alpha-tropomyosin (E_value = );","","","No significant hits to the Pfam 11.0 database","Mon Feb 26 16:46:17 MST 2001","34541010","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Mon Mar 7 11:32:15 2005","","1","","","PG1316" "PG1157","1397247","1396840","408","ATGAAACAGTTCGACCCCGATGTGAATATCCGTCCGAAAGAGGACAGTATTCGACACTACTCTGTGCCGGATGACTACTTCGCCTCTTTTACGGACAAACTCATGGCCCAGATTCCTGCCGTTAAAGAGGAAAATACTGTGGTTGTGCCTTCGGTAGCATTGTGGCCTAAATTGCGCCCGTTGCTTTATTTGGCGGCATCATTCCTGCTGATGATCGGTATGTTCAAGGCCTTCAGCCTTTTCGGAGTGGGGAGTGATACCGGTAGAACCACCTCCACATCAGCCGGACTTGTTGCTTTAGACCATGGCGACACCAGATGGAGCGAGGACACCGATTATAGAGATTTCCTCCATGACAACTGTGCTGAAACAGTGTCAGACGAATGGGTACTAACGGATTTCAGCGAA","4.40","-9.33","15315","MKQFDPDVNIRPKEDSIRHYSVPDDYFASFTDKLMAQIPAVKEENTVVVPSVALWPKLRPLLYLAASFLLMIGMFKAFSLFGVGSDTGRTTSTSAGLVALDHGDTRWSEDTDYRDFLHDNCAETVSDEWVLTDFSE","1397247 1396840","TIGR ID: PG1317","hypothetical protein","Cytoplasm","This sequence corresponds to gi:34397326 in Genbank.","
noIPR
unintegrated
unintegrated
tmhmm\"[61-81]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon Mar 7 13:48:55 2005","Mon Mar 7 13:48:55 2005","Mon Feb 26 16:48:15 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Feb 26 16:48:15 MST 2001","-63% similar to PDB:2FK7 Crystal structure of Hma (MmaA4) from Mycobacterium tuberculosis, apo-form (E_value = );-63% similar to PDB:2FK8 Crystal structure of Hma (MmaA4) from Mycobacterium tuberculosis complexed with S-adenosylmethionine (E_value = );","","","No significant hits to the Pfam 11.0 database","Thu Jun 14 13:23:34 MDT 2001","34541011","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Mon Mar 7 13:49:40 2005","","1","","","PG1317" "PG1158","1397861","1397298","564","ATGGCTGATAAGCTATTGATTTCGGAAGAAGAGTTGCTGGAAGAGCTGAGAGATCCGGCAAGGCGGCGTATGGCCTTTGAAAAGGTAGTACGCCTGTACAACCGTAAACTCTACTGGCAAATCCGCCGAATGGTGCTCAGTCATGACGATACGGACGACTTGCTCCAAAATACCTTTATGAAGGCATGGAGTGCATTGGACGGTTTTCGTGGGGAGGCCAAACTCTCCACCTGGCTCTATCGGATAGCCATGTACGAATCACTCAATTTCCTGAAGAAGAAAAAGATCGAAGACGATATGAGTATATCGATCACGGACGAAAACTCCTATCTGCTCGACAACCTCACGGGGGATGTTTATTTCGATGGAGATGAAGCCGAGATTACCTTCCAAAAGGCTATACTGGAATTGCCTGATAAACAGCGGTTGGTGTTCAACCTTCGGTACTACGATGAGATGCCTTACGAAAAAATGGCCGAAATCACCGGTACCTCGGAAGGTGCTCTCAAGGCATCGTACCACCATGCTGTGAAGAAGTTGGAGCGTTTTTTGTCGCCCGATGAT","4.90","-7.26","22241","MADKLLISEEELLEELRDPARRRMAFEKVVRLYNRKLYWQIRRMVLSHDDTDDLLQNTFMKAWSALDGFRGEAKLSTWLYRIAMYESLNFLKKKKIEDDMSISITDENSYLLDNLTGDVYFDGDEAEITFQKAILELPDKQRLVFNLRYYDEMPYEKMAEITGTSEGALKASYHHAVKKLERFLSPDD","1397861 1397298","TIGR ID: PG1318","RNA polymerase sigma factor","Cytoplasm","Numerous significant hits and weak hits to sigma factor proteins in gapped BLAST; e.g. residues 23-186 are 30% similar to gb|AAF18265.1|U22895_1 alternative sigma factor of Azotobacter vinelandii, residues 25-184 are 30% similar to emb|CAB11966.1| RNA polymerase ECF-type sigma factor (sigma-W) of Bacillus subtilis, residues 23-186 are 28% similar to sp|Q06198|RPSH_PSEAE RNA polymerase sigma-H factor (sigma-30) of Pseudomonas aeruginosa.","
InterPro
IPR000838
Domain
RNA polymerase sigma factor 70, ECF
PS01063\"[51-82]TSIGMA70_ECF
InterPro
IPR007627
Domain
RNA polymerase sigma-70 region 2
PF04542\"[29-96]TSigma70_r2
InterPro
IPR013249
Domain
RNA polymerase sigma factor 70, region 4 type 2
PF08281\"[127-180]TSigma70_r4_2
InterPro
IPR013324
Domain
RNA polymerase sigma factor, regions 3 and 4
SSF88659\"[119-186]TSigma_r3_r4
InterPro
IPR013325
Domain
RNA polymerase sigma factor, region 2
SSF88946\"[1-114]TSigma_r2
InterPro
IPR014284
Domain
RNA polymerase sigma-70
TIGR02937\"[24-184]Tsigma70-ECF
noIPR
unintegrated
unintegrated
G3DSA:1.10.1740.10\"[20-99]TG3DSA:1.10.1740.10


","BeTs to 6 clades of COG1595COG name: Specialized sigma subunits of RNA polymeraseFunctional Class: KThe phylogenetic pattern of COG1595 is ------VCEBRH-----l---Number of proteins in this genome belonging to this COG is 6","***** IPB000838 (Sigma factor, ECF subfamily) with a combined E-value of 3.9e-25. IPB000838A 53-89 IPB000838B 134-180","Residues 37-184 are 29% similar to a (FACTOR SIGMA RNA POLYMERASE) protein domain (PD001205) which is seen in Q45585_BACSU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon Feb 26 17:16:13 MST 2001","Fri Mar 23 14:27:12 MST 2001","Mon Feb 26 17:16:13 MST 2001","Fri Feb 23 11:19:15 MST 2001","Fri Feb 23 11:19:15 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1158 is similar to PG1449 and PG0148, predicted RNA polymerase sigma factors. Residues 25-184 are 31% similar to PG1449.","Mon Jun 4 13:08:35 MDT 2001","Fri Feb 23 11:19:15 MST 2001","-50% similar to PDB:1OR7 Crystal Structure of Escherichia coli sigmaE with the Cytoplasmic Domain of its Anti-sigma RseA (E_value = 8.6E_12);","","","Residues 29 to 96 (E-value = 2.1e-14) place PG1158 in the Sigma70_r2 family which is described as Sigma-70 region 2 (PF04542)Residues 133 to 182 (E-value = 2.4e-08) place PG1158 in the Sigma70_r4 family which is described as Sigma-70, region 4 (PF04545)","Fri Mar 23 14:27:12 MST 2001","34541012","","","","","","1","","","PG1318" "PG1159","1398895","1399527","633","ATGGCATGCCAATCCAAGAATACCGATGAGCATGTAACATTTGCAGACGCACTCCTTTCAAAGCGTTATCGCAAAGCACAAAACGACTTCCTCAATCAGGTTGACAGGCTTATCGATTGGCGTCCGATCAGGACGCTGATCAACAAGAAATACACGAAGCGACAAAATGCCATCGGTGCCCCGGCTTATGACGTGATTCTCTTATTCAAGATGTTGCTTCCGAAGACATGGTACAACCTCAGTGATTGTGCTTTGGAGGAGCGCATCAATGATTCAATCACCTTTTCCCGATTCTTGGGGCTGAAGATGGAAGAGGTATCTCCCGACCACAGCACCATCAGTCGATTTTGTTCGGCACTGACAGAGTTGGGTCTCATGGACAAACTGTTGGCGCAATTTAACAAACAACTTTCCCGCCATCACATTTCGGTAAGGGAAGGGGTGCTTGTCGATGCAAGCCTTGTGGAGATACGGAGCACCATCGAACGCACCTTTGGCAGTATTCGCCGGTGGTTTCATGGCGGACGATGTCGATACCGGGGACTTGCCAAGACCCATACTCAAAACATTCTTGAAAGCATCGCCTTTAATTTATACAGAACCCCGGGGATAATTATGTCCTCATCCGTAGGA","10.40","11.25","24285","MACQSKNTDEHVTFADALLSKRYRKAQNDFLNQVDRLIDWRPIRTLINKKYTKRQNAIGAPAYDVILLFKMLLPKTWYNLSDCALEERINDSITFSRFLGLKMEEVSPDHSTISRFCSALTELGLMDKLLAQFNKQLSRHHISVREGVLVDASLVEIRSTIERTFGSIRRWFHGGRCRYRGLAKTHTQNILESIAFNLYRTPGIIMSSSVG","1398895 1399527","Member of the IS5 family of elements. Equivalent to the N-terminal domains of full-length ISPg1 elements such as PG1662.TIGR ID: PG1320","ISPg1 fragment (IS1126-related transposase fragment)","Cytoplasm","PG1159 is equivalent to the previously sequenced AB019363 in GenBANK, a predicted IS1126-related transposase. Residues 10-166 are 31% similar to the TnpA3 sequence of P.stutzeri (AF039534).","
InterPro
IPR002559
Domain
Transposase, IS4-like
PF01609\"[35-198]TTransposase_11


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 12-109 are 97% similar to a (TRANSPOSASE PROTEIN INSERTION ELEMENT) protein domain (PD007264) which is seen in Q9ZAD0_PORGI.Residues 157-211 are identical to a (TRANSPOSASE ORF7 INSERTION SEQUENCE IS1126-LIKE GENE) protein domain (PD187845) which is seen in Q9ZAD0_PORGI.Residues 110-156 are 97% similar to a (TRANSPOSASE ORF7 INSERTION SEQUENCE IS1126-LIKE GENE) protein domain (PD187846) which is seen in Q9ZAD0_PORGI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Fri Feb 16 15:45:17 MST 2001","Mon Feb 12 16:10:49 MST 2001","Tue Jan 2 14:20:10 MST 2001","Tue Jan 2 14:16:02 MST 2001","","Mon Feb 12 16:10:49 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1159 is similar to the N-terminal regions of PG0842, PG0732, PG1662, PG1422, PG1267, PG1062, PG1050, PG0918, PG0740, PG0169, PG0499, PG0420, PG1608, PG1607, PG0884, PG0731, PG1665, PG0689, PG1895, PG1215, PG0839, PG1919, PG1798, PG1230, PG0756, PG0044, PG1755, PG1184, PG1087, PG0763, PG0686, PG0883, PG1231, PG0730, all ISPg1 related elements. See in particular PG0731 and PG0884.","Fri Feb 16 15:45:17 MST 2001","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541013","","Hanley,S.A., Aduse-Opoku,J. and Curtis,M.A.A 55-kilodalton immunodominant antigen of Porphyromonas gingivalisW50 has arisen via horizontal gene transferInfect. Immun. 67 (3), 1157-1171 (1999)Maley,J. and Roberts,I.S.Characterisation of IS1126 from Porphyromonas gingivalis W83: a new member of the IS4 family of insertion sequence elementsMicrobiol. Lett. 123 (1-2), 219-224 (1994)Shibata,Y., Hayakawa,M., Takiguchi,H., Shiroza,T. and Abiko,Y.Determination and characterization of the hemagglutinin-associatedshort motifs found in Porphyromonas gingivalis multiple geneproducts. J. Biol. Chem. 274 (8), 5012-5020 (1999)","","Mon Feb 12 16:10:49 MST 2001","","1","","24","PG1320" "PG1160","1401416","1399752","1665","ATGAAATCGGACATTCAGATTGCACGTGACATCGAACTGCAAAGAATCGAACAGATAGCAGAGTCAATCGACTTGCCTGTCGAACAATTAGAACCATACGGACGATACACGGCCAAAGTGCCGCTAAGCTGTATCGACGAAGAGAAAGTAAAAAAGGGAAATCTGATTCTGGTGACAGCCATTACGCCGAACAAGGCCGGTGTGGGAAAAACCACTGTCTCCATCGGATTGGCTCTGGGACTCAACCATATCGGGAAGAAGGCAATCGTAGCCTTGCGCGAACCTTCGCTCGGACCTTGCTTCGGTATGAAAGGGGGGGCTGCCGGAGGTGGCTATGCACAGGTACTGCCCATGGAGAACATCAACCTCCACTTCACCGGTGATTTCCATGCTGTCACTTCGGCTCACAACATGATTACGGCTCTTTTGGAGAACTATATTTATCAGAACCGCAATACTTGCGACGGCCTCTCCGAAATACTTTGGAAGCGTGTACTGGACGTTAACGACCGCTCTTTGCGCAATGCCGTTACGGGGTTGGGTACCATCTCGGACGGAATACCTCGCCAGACCGGTTTTGACATTACGCCGGCTTCCGAGATCATGGCTATCCTCTGTCTGGCCAAAGACTTTGAAGACCTCCGCAGCCGTCTTGAAAATATTCTTCTCGGCTATACCAAAGAAGGTGCTCCCTTTACGGTCAAAGACCTCGGCATAGCAGGATCCATTGCCGTCTTGCTCAAAGATGCCATAAAGCCTAATCTGGTACAGACCACAGAGCACACTCCGGCATTTGTACATGGAGGCCCCTTTGCCAATATCGCACATGGCTGTAACTCCATCTTGGCCACAAAGATGGCTCTCTCTTTCGGCGAATATGCCGTCACCGAGGCCGGTTTCGGTGCAGATCTGGGTGCAGAAAAATTCCTTGACATCAAATGTCGGGAAATGGGTGTCGCACCCAAGCTTACCGTCCTCGTGGCCACGCTGCGCGCGCTCAAATTGCATGGCGGCGTTGCCGAAACGGAAATCAAGGCACCCAATGCCGAAGCTCTCAGAAGAGGTTTGTCCAATCTGGATCGCCACATATACAATCTGAAAAAATTCGGTCAGCAAGTAATCGTTGCATTCAACCGCTTCGACACCGACGAAGAAGAAGAGATCAGCATCGTTCGTGAGCATTGTATCGGGCAAAATGTCGGCTTCGCTGTGAACAACGCCTTTGCAGAAGGCGGAAAAGGTGCGGAAGAACTGGCAAAACTTGTTGTGGAAATGGTAGAGAATAAACCCTCCCAGCCTCTGAAATATGCCTATGAGCCGGAGAATCCCGTGAAAATGAAGATCGAGAAGATCGCCAAGGAAATATACAGCGCAGGGAGTGTAGTGTATAGCTCCAAAGCAGACGGCAAGCTCAAAAAGATTGCCATGCAATCGCTGGATCATCTCCCCGTTTGTATTGCCAAGACGCAGTACTCTTTCTCATCCGACCCCAAAGCCAAGGGAGATGTCAGAGGGTTTGAGCTCAAAGTATCCGACATCATCATCAACCGTGGAGCAGGCATGCTGGTCGTTATCATCGGAGAGATCATGCGTATGCCCGGACTCCCCAAAGAACCGCAAGCTGTACATATAGATATAGTAGACGGTTTCATCGAAGGCCTTAGC","6.60","-2.44","60066","MKSDIQIARDIELQRIEQIAESIDLPVEQLEPYGRYTAKVPLSCIDEEKVKKGNLILVTAITPNKAGVGKTTVSIGLALGLNHIGKKAIVALREPSLGPCFGMKGGAAGGGYAQVLPMENINLHFTGDFHAVTSAHNMITALLENYIYQNRNTCDGLSEILWKRVLDVNDRSLRNAVTGLGTISDGIPRQTGFDITPASEIMAILCLAKDFEDLRSRLENILLGYTKEGAPFTVKDLGIAGSIAVLLKDAIKPNLVQTTEHTPAFVHGGPFANIAHGCNSILATKMALSFGEYAVTEAGFGADLGAEKFLDIKCREMGVAPKLTVLVATLRALKLHGGVAETEIKAPNAEALRRGLSNLDRHIYNLKKFGQQVIVAFNRFDTDEEEEISIVREHCIGQNVGFAVNNAFAEGGKGAEELAKLVVEMVENKPSQPLKYAYEPENPVKMKIEKIAKEIYSAGSVVYSSKADGKLKKIAMQSLDHLPVCIAKTQYSFSSDPKAKGDVRGFELKVSDIIINRGAGMLVVIIGEIMRMPGLPKEPQAVHIDIVDGFIEGLS","1401416 1399752","TIGR ID: PG1321","formate--tetrahydrofolate ligase (formyltetrahydrofolate synthetase)","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 1-554 are 53% similar to sp|P13419|FTHS_CLOAC formate-tetrahydrofolate ligase (formyltetrahydrofolate synthetase) (FHS) (FTHFS) of Clostridium acidi-urici, residues 1-555 are 50% similar to pir||I40808 formate--tetrahydrofolate ligase of Clostridium cylindrosporum, residues 1-554 are 49% similar to gb|AAB49329.1| formyl-tetrahydrofolate synthetase of Streptococcus mutans.This sequence is similar to BT0737.","
InterPro
IPR000559
Domain
Formate-tetrahydrofolate ligase, FTHFS
PF01268\"[1-555]TFTHFS
PS00721\"[102-112]TFTHFS_1
PS00722\"[327-338]NFTHFS_2
noIPR
unintegrated
unintegrated
G3DSA:3.10.410.10\"[443-532]TG3DSA:3.10.410.10
G3DSA:3.40.50.300\"[2-442]TG3DSA:3.40.50.300
PTHR10025\"[1-555]TPTHR10025
SSF52540\"[4-553]TSSF52540


","BeTs to 6 clades of COG0455COG name: ATPases involved in chromosome partitioningFunctional Class: DThe phylogenetic pattern of COG0455 is AMTK-QVcEBR-UJ--OL---Number of proteins in this genome belonging to this COG is 2","***** IPB000559 (Formate--tetrahydrofolate ligase) with a combined E-value of 2.3e-216. IPB000559A 12-51 IPB000559B 51-81 IPB000559C 92-144 IPB000559D 153-195 IPB000559E 196-231 IPB000559F 232-270 IPB000559G 271-290 IPB000559H 292-340 IPB000559I 347-388 IPB000559J 415-469 IPB000559K 476-513 IPB000559L 514-546","Residues 3-467 are 54% similar to a (SYNTHASE C-1-TETRAHYDROFOLATE C1-THF) protein domain (PD003089) which is seen in FTHS_CLOAC.Residues 479-535 are 57% similar to a (SYNTHASE SYNTHETASE C-1-TETRAHYDROFOLATE) protein domain (PD186204) which is seen in FTHS_CLOAC.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Feb 27 08:54:43 MST 2001","Wed Dec 3 09:05:40 2003","Tue Feb 27 08:41:21 MST 2001","Tue Feb 27 08:41:21 MST 2001","Tue Feb 27 08:41:21 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 27 08:41:21 MST 2001","-68% similar to PDB:1FP7 MONOVALENT CATION BINDING SITES IN N10-FORMYLTETRAHYDROFOLATE SYNTHETASE FROM MOORELLA THERMOACETICA (E_value = 2.1E_155);-68% similar to PDB:1FPM MONOVALENT CATION BINDING SITES IN N10-FORMYLTETRAHYDROFOLATE SYNTHETASE FROM MOORELLA THERMOACETICA (E_value = 2.1E_155);-68% similar to PDB:1EG7 THE CRYSTAL STRUCTURE OF FORMYLTETRAHYDROFOLATE SYNTHETASE FROM MOORELLA THERMOACETICA (E_value = 4.0E_154);","","","Residues 1 to 555 (E-value = 4.6e-260) place PG1160 in the FTHFS family which is described as Formate--tetrahydrofolate ligase (PF01268)","Tue May 8 10:11:01 MDT 2001","34541014","","","Whitehead,T.R. and Rabinowitz,J.C. 1988. Nucleotide sequence of the Clostridium acidiurici ('Clostridium acidi-urici') gene for 10-formyltetrahydrofolate synthetase shows extensive amino acid homology with the trifunctional enzyme C1-tetrahydrofolate synthase from Saccharomyces cerevisiae. J. Bacteriol. 170 (7): 3255-3261. PubMed: 2838464. ","","Wed Dec 3 09:05:40 2003","1","","24","PG1321" "PG1161","1401573","1402904","1332","ATGGCTGCTAAAGGGAAAAAAAAGAATTTCGTGTTGGACACTAATGTAATGCTGCACGACTATGAATGCATAGAGAAATTTGAAGAAAACGACATCTATATCCCTATCGTTTCGCTCGAAGAATTGGATAAGTTCAAAAAAGGAAGCGAACAAATCAACTTCAACGCACGAGCTTTTGTCCGCCGTCTGGATGAGATATCCGATCAAGATCTGTTCGCGAAAGGAGCTTCTCTGGGAGAAGGCTTAGGGCGAATCTTCGTCAAGATCAATGGCCAATACCACACCAAAGTAAAAGAAGCGTTCGGCGAAAACAAGGCCGACCATCGTATCCTCTCCATCGCTATGACGCTGGCTGATGAGCAGCCTAACATCAAGACTATCCTCGTCACCAAAGACGTGAACCTGCGGATGAAAGCCCGCTCCCTCGGAATGCTCGTAGAGGATTACATCAATGACAAGGTGACTCGAGTAGACCTTTTCGAGAATGCCGAGCCGGAATACGAAGGTGTTGACGGCGATCTGATCGATCGTATTTATGCATCCAAAGACGGCATCGATATAGACGAGTGGGAATTGGGTTCGAAGATCGATCCTAACGACTGCTTTGTGATGAAGAGCGAACGCAACAGTGTATTGGCACGTTACAATCCTTTCACCGGGAAGATAGTTAGGGTTGAGAAAGGACACTATTTCGGGATCCAACCACGCAATGCAGAGCAGACCTTCGCCATGCACATCCTTACAGATCCGAATGTAAAGCTCATTGGACTGACGGGGAAAGCCGGTACGGGCAAAACATTGCTGGCTCTGGCAGCAGCTCTCAGTCAGGAACAGTCCTACAAACAAATCCTGCTTGCACGGCCCATCGTCTCATTGGCCAATAAGGACTTGGGATTCCTGCCGGGCGATGAGAAAGCCAAAGTGGCACCATACATGCAACCGCTTTTCGACAATCTGAATGTGATCAAAGGACAGTTGGCTCAAAATAGCAGCGAACTCCGCAGGCTGGACGAAATGCAGAAAACCGAAAAGCTCGTTATCGAAGCTTTGGCATACATCAGAGGACGTAGCGTGTCGGAAACGATATTTATCGTCGATGAAGCACAAAACCTGACTCCTCACGAAATCAAAACGATTATCACCCGTGCAGGAGAAGGTAGCAAGCTGATTTTTACAGGCGACATCGAACAGATCGACTCTCCATACCTCGATGCCCAGAGCAACGGATTGGCCTATATGATCGAAAGGATGAAGGGGCAACCGCTCTTCGCCCATGTCAATCTGATCAAGGGCGAACGAAGCGAGCTGAGCGAATTGGCCAGTGATTTGCTC","5.30","-9.36","49810","MAAKGKKKNFVLDTNVMLHDYECIEKFEENDIYIPIVSLEELDKFKKGSEQINFNARAFVRRLDEISDQDLFAKGASLGEGLGRIFVKINGQYHTKVKEAFGENKADHRILSIAMTLADEQPNIKTILVTKDVNLRMKARSLGMLVEDYINDKVTRVDLFENAEPEYEGVDGDLIDRIYASKDGIDIDEWELGSKIDPNDCFVMKSERNSVLARYNPFTGKIVRVEKGHYFGIQPRNAEQTFAMHILTDPNVKLIGLTGKAGTGKTLLALAAALSQEQSYKQILLARPIVSLANKDLGFLPGDEKAKVAPYMQPLFDNLNVIKGQLAQNSSELRRLDEMQKTEKLVIEALAYIRGRSVSETIFIVDEAQNLTPHEIKTIITRAGEGSKLIFTGDIEQIDSPYLDAQSNGLAYMIERMKGQPLFAHVNLIKGERSELSELASDLL","1401573 1402904","TIGR ID: PG1323","phoH-related protein","Cytoplasm","This sequence is similar to CT015, a phoH-related protein (3e-65), and to BT1334.Numerous significant hits in gapped BLAST; e.g. residues 8-444 are 37% similar to emb|CAB13354.1| phosphate starvation inducible protein of Bacillus subtilis, residues 8-444 are 37% similar to gb|AAD35580.1|AE001726_14 phoH-related protein of Thermotoga maritima, residues 7-444 are 32% similar to gb|AAC67605.1| ATPase of Chlamydia trachomatis.","
InterPro
IPR003714
Family
PhoH-like protein
PF02562\"[232-442]TPhoH
InterPro
IPR006596
Domain
Nucleotide binding protein, PINc
SM00670\"[8-137]TPINc
noIPR
unintegrated
unintegrated
SSF52540\"[235-434]TSSF52540
SSF88723\"[6-160]TSSF88723


","BeTs to 4 clades of COG1875COG name: Predicted ATPase related to phosphate starvation-inducible protein PhoHFunctional Class: TThe phylogenetic pattern of COG1875 is ------v--br-------in-Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 229-438 are 43% similar to a (PROTEIN ATP-BINDING PHOH-LIKE PHOSPHATE) protein domain (PD007750) which is seen in O07635_BACSU.Residues 8-158 are 36% similar to a (PROTEIN ATPASE YLAK) protein domain (PD040945) which is seen in O07635_BACSU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Mar 21 13:49:36 MST 2000","Thu Dec 4 13:27:54 2003","Tue Feb 27 09:19:58 MST 2001","","Tue Feb 27 09:19:58 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 254-401 are 40% similar to PG0872, a predicted phosphate starvation-inducible protein phoH.","Tue Feb 27 09:19:58 MST 2001","Tue Feb 27 09:19:58 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 108 to 438 (E-value = 1.5e-10) place PG1161 in the PhoH family which is described as PhoH-like protein (PF02562)","Tue Feb 27 09:19:58 MST 2001","34541015","","","","","","1","","24","PG1323" "PG1162","1403524","1402958","567","ATGAGTCCGAAGGAACGCATTATCATGGGAGTAGACCCCGGCACAATACTGATGGGCTACGGGATGCTTCACGTCGTGGGGAATACTCCCCGACTCATGGCTATGGGGGTAATACGTCTGGAGAAATTCGACAATCACTATATCCGTCTGAAACGCATATTCGACAGGATTACAGGTCTGATCGATGAATTCCTACCGGATGAAATGGCTATCGAAGCACCTTTCTTTGGGAAGAATGTACAGAGTATGCTCAAGTTAGGGCGGGCTCAGGGTGTCGCTATGGCAGCGGCTTTGGCTCGCGACATTCCTATTACGGAATATGCTCCGATGCGCATCAAGCAAGCGATTACAGGTAATGGCAATGCGAGCAAAGAGCAGGTAGCCGGCATGCTCCAACGCTATTTACGAATACCTGACGAACAGATGTTACCTGAAATGGATGCCACGGACGGACTGGCGGCTGCCGTCTGCCACTTCTTTCAGACGTCGGGACCTATGGCTCGTTCGGGCGGATCGGCAGTCAAGAATTGGAAAGACTTCGTCAACCGGAATCCGGATAAGGTACGC","10.10","4.67","20955","MSPKERIIMGVDPGTILMGYGMLHVVGNTPRLMAMGVIRLEKFDNHYIRLKRIFDRITGLIDEFLPDEMAIEAPFFGKNVQSMLKLGRAQGVAMAAALARDIPITEYAPMRIKQAITGNGNASKEQVAGMLQRYLRIPDEQMLPEMDATDGLAAAVCHFFQTSGPMARSGGSAVKNWKDFVNRNPDKVR","1403524 1402958","This nuclease, also called a resolvase, cleavescruciform structures in supercoiled DNA. It is acrossover junction endonuclease, typically ahomodimer. TIGR ID: PG1324","holliday junction endonuclease (crossover junction endodeoxyribonuclease)","Inner membrane, Cytoplasm","This sequence is also orthologous to CT502.Numerous significant hits to crossover junction endodeoxyribonuclease (Holliday junction nuclease) (Holliday junction resolvase) in gapped BLAST; e.g. residues 7-158 are 40% similar to gb|AAF94995.1| crossover junction endodeoxyribonuclease of Vibrio cholerae, residues 7-166 are 38% similar to dbj|BAA98828.1| crossover junction endonuclease of Chlamydophila pneumoniae J138, residues 7-138 are 43% similar to gb|AAG56853.1|AE005408_11 Holliday junction nuclease; resolution of structures; repair of Escherichia coli O157:H7.","
InterPro
IPR002176
Family
Crossover junction endodeoxyribonuclease RuvC
PD008333\"[14-158]TRuvC
PR00696\"[9-22]T\"[66-82]T\"[88-104]T\"[112-131]TRSOLVASERUVC
PF02075\"[8-158]TRuvC
TIGR00228\"[8-167]TruvC
PS01321\"[118-155]NRUVC
InterPro
IPR012337
Domain
Polynucleotidyl transferase, Ribonuclease H fold
SSF53098\"[6-167]TRNaseH_fold
noIPR
unintegrated
unintegrated
G3DSA:3.30.420.10\"[6-167]TG3DSA:3.30.420.10


","BeTs to 8 clades of COG0817COG name: Holliday junction endodeoxyribonuclease RuvCFunctional Class: LThe phylogenetic pattern of COG0817 is ------vce-rhuj---linxNumber of proteins in this genome belonging to this COG is 1","***** IPB002176 (Crossover junction endodeoxyribonuclease RuvC) with a combined E-value of 7e-34. IPB002176A 8-20 IPB002176B 49-91 IPB002176C 112-151","Residues 7-158 are 42% similar to a (CROSSOVER JUNCTION ENDODEOXYRIBONUCLEASE) protein domain (PD008333) which is seen in RUVC_ECOLI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Thu Apr 11 16:02:50 2002","Thu Apr 11 16:02:50 2002","Tue Feb 27 10:06:21 MST 2001","Thu Apr 11 16:02:50 2002","Tue Feb 27 09:34:54 MST 2001","Tue Feb 27 09:34:54 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 27 09:34:54 MST 2001","-62% similar to PDB:1HJR ATOMIC STRUCTURE OF THE RUVC RESOLVASE: A HOLLIDAY JUNCTION-SPECIFIC ENDONUCLEASE FROM E. COLI (E_value = 2.3E_28);-60% similar to PDB:1V4E Crystal Structure of Octaprenyl Pyrophosphate Synthase from Hyperthermophilic Thermotoga maritima (E_value = 2.3E_28);-60% similar to PDB:1V4H Crystal Structure of Octaprenyl Pyrophosphate Synthase from Hyperthermophilic Thermotoga maritima F52A mutant (E_value = 2.3E_28);-60% similar to PDB:1V4I Crystal Structure of Octaprenyl Pyrophosphate Synthase from Hyperthermophilic Thermotoga maritima F132A mutant (E_value = 2.3E_28);-60% similar to PDB:1V4J Crystal Structure of Octaprenyl Pyrophosphate Synthase from Hyperthermophilic Thermotoga maritima V73Y mutant (E_value = 2.3E_28);","","","Residues 8 to 158 (E-value = 1.7e-49) place PG1162 in the RuvC family which is described as Crossover junction endodeoxyribonuclease RuvC (PF02075)","Thu Apr 11 16:02:50 2002","34541016","","","Sharples,G.J. and Lloyd,R.G. 1991. Resolution of Holliday junctions in Escherichia coli: identification of the ruvC gene product as a 19-kilodalton protein. J. Bacteriol. 173 (23): 7711-7715. PubMed: 1657895. Takahagi,M., Iwasaki,H., Nakata,A. and Shinagawa,H. 1991. Molecular analysis of the Escherichia coli ruvC gene, which encodes a Holliday junction-specific endonuclease. J. Bacteriol. 173 (18): 5747-5753. PubMed: 1885548.Iwasaki,H., Takahagi,M., Shiba,T., Nakata,A. and Shinagawa,H. 1991. Escherichia coli RuvC protein is an endonuclease that resolves the Holliday structure. EMBO J. 10 (13): 4381-4389. PubMed: 1661673.","","Tue Feb 27 10:06:21 MST 2001","1","","24","PG1324" "PG1163","1403971","1403600","372","TTGAAGGGAAAAGTGCTCATTGCGGTTTTTCATAACTTTGCGTTATCTCTGAAAGGAATACACAGAATGATTTTGTACAATATAACGTGGGTAACGGAGGCTGCCGTAGAGGAGACATTGATCGACTATCTTCGTTCGACTTTCATCCCATCGGTCATTGCTGACGGATCTATGCATTCCCCTGTCCTACACCGCATCGAAAAGGGAGCACAGGAAGAAGGCGTATCGCTGGCTCTCCATTTCTTCGCAGACCAATCGACTGATATAGATGAATATTGGTGCGGTCTGGGGGCAAAACATATAGCGACCCTCATCGGGAAGTTCGGCAACAGGGTCATGGGTTTTGCCACCACGATGAGAAGAATAGAATTG","7.20","0.38","13845","LKGKVLIAVFHNFALSLKGIHRMILYNITWVTEAAVEETLIDYLRSTFIPSVIADGSMHSPVLHRIEKGAQEEGVSLALHFFADQSTDIDEYWCGLGAKHIATLIGKFGNRVMGFATTMRRIEL","1403971 1403600","TIGR ID: PG1325","hypothetical protein","Cytoplasm","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-16]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","","Tue Feb 27 10:11:39 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 27 10:11:39 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Feb 27 10:11:39 MST 2001","34541017","","","","","","1","","24","PG1325" "PG1164","1404101","1405231","1131","TTGTTTAATCATAAAAAATCATGGTATGAAACATTTCAATTTTATCTCGTTGTTTTCCGCTCTGGCTTTATTCTTTTGTGTGAAAATACCCTTGCACAACAAAAAACAGAGGAGTTTGCACCTGTGTCGGATTTACGTGCAGAAGCGTACGGCTCTACCGTTTTCCTCCACTGGACTCCGCCGTATGACAATCCGATGATTCCTCTAAGCGAGAGTTTTGAATCAGGTATTCCAGCTATATGGAAGACCATTGACGCAGATGGCGATGGCTATAATTGGATGCATTTGACCAATTTCACGGGACAGAGTGGTCTCTGTGTCTCTTCGGCTTCATACATAGGCGGCGTCGGAGCTTTGACTCCGGACAATTATCTGATAACACCCGAATTAAAACTACCCACAGACGCGTTGGTGGAAATAATCTATTGGGTATGTACTCAAGATCTCACTGCTCCATCGGAGCACTATGCCGTTTATTCCTCTTCTACAGGCAATAATGCTGCTGACTTTGTTAATCTCTTATATGAAGAGACTTTGACTGCCAAACGGATACAATCCCCCGAGTTGATCCGCGGAAATCGGACACAAGGTGTTTGGTATCAAAGAAAGGTGGTACTCCCTAACGATACTAAATATGTTGCTTTCCGCCATTTTAATTCCACGGATAATTTCTGGCTCAATTTGGATGAAGTATCTATCCTGTATACCCCTCTTCCCCGAAGAGCTCCGTGTCCGCATCCGGGTGGTTACACTTATTCTGTATTCCGTGATGGACAAAAGATAGCGAGTGGATTGTCGGCATTGGCATATATCGATACGGATGTACCGTATGGGACTCAAGACTATTGTGTCCAAGTCAATTATCTGCAAGGAGACTCGTATAAAGTCTGCAAAAATATAGTGGTGGCAAATTCTGCAAACATCTATGGGGCGGATAAGCCTTTTGCGTTGACCGTGGTTGGCAAGACCATTGTAGCGAGTGCTTTCAAAGGAGAGATCACTCTTTATGACATTCGTGGCCGGCTGATAGCTTCCGGCTGCGATACGCTTAGGTACAAAGCGGAAAATGGTTTTTACCTCATTAAAATACAGGTAAACGGAACTGTCTATACTGAGAAAATCCAAATCCAA","5.50","-5.88","42254","LFNHKKSWYETFQFYLVVFRSGFILLCENTLAQQKTEEFAPVSDLRAEAYGSTVFLHWTPPYDNPMIPLSESFESGIPAIWKTIDADGDGYNWMHLTNFTGQSGLCVSSASYIGGVGALTPDNYLITPELKLPTDALVEIIYWVCTQDLTAPSEHYAVYSSSTGNNAADFVNLLYEETLTAKRIQSPELIRGNRTQGVWYQRKVVLPNDTKYVAFRHFNSTDNFWLNLDEVSILYTPLPRRAPCPHPGGYTYSVFRDGQKIASGLSALAYIDTDVPYGTQDYCVQVNYLQGDSYKVCKNIVVANSANIYGADKPFALTVVGKTIVASAFKGEITLYDIRGRLIASGCDTLRYKAENGFYLIKIQVNGTVYTEKIQIQ","1404101 1405231","Ross, et al.(2001) select PG1164 as one of fifteen vaccine candidate antigens, based on in vitro and in vivo laboratory studies of 120 candidates screened by bioinformatics techniques from the whole W50 genome.TIGR ID: PG1326","outer membrane receptor","Outer membrane, Cytoplasm, Extracellular","PG1164 is identical to the previously sequenced P.gingivalis, strain W50, protein in GenBANK, AAF81413, hypothetical outer membrane protein PG27. No other significant hits in gapped BLAST except to paralogs.","
InterPro
IPR011628
Domain
Cleaved adhesin
PF07675\"[66-233]TCleaved_Adhesin
InterPro
IPR013237
Domain
Phage P4 alpha, zinc-binding
SM00778\"[239-265]Tno description
noIPR
unintegrated
unintegrated
signalp\"[1-32]?signal-peptide


","No hit to the COGs database.","***** PF01364 (Peptidase family C25) with a combined E-value of 9.2e-10. PF01364F 279-332 PF01364G 335-373","Residues 247-302 are 48% similar to a (PROTEASE PRECURSOR SIGNAL THIOL HEMAGGLUTININ REPEAT) protein domain (PD002028) which is seen in O52050_PORGI.Residues 311-377 are 44% similar to a (PROTEASE PRECURSOR THIOL SIGNAL) protein domain (PD004371) which is seen in P72194_PORGI.Residues 38-229 are 54% similar to a (PROTEASE PRECURSOR SIGNAL HEMAGGLUTININ THIOL REPEAT) protein domain (PD001858) which is seen in HAGA_PORGI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Wed Nov 7 14:15:20 2001","Tue May 8 10:22:21 MDT 2001","Tue May 8 10:20:38 MDT 2001","Thu Dec 7 12:44:01 MST 2000","Tue Feb 27 10:28:53 MST 2001","Tue Feb 27 10:28:53 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 38-377 are similar to multiple domains of PG1602, a predicted hemagglutinin/adhesin precursor; HAGA, domains each beginning at residues 201, 471, 688, 925, 1140, 1377, 1592 and 1829. Strong similarities are also seen to domains of:PG1606 hemagglutinin-related protein,PG1605 porphypain polyprotein; lys-X proteinase/hemagglutinin, PG1768 arginine-specific cysteine proteinase: gingipain R1,PG0376 possible outer membrane protein,PG1922, PG0461 arginine-specific cysteine proteinase: gingipain R2.","Mon Jun 4 13:13:57 MDT 2001","Tue Feb 27 10:28:53 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Mar 29 16:16:51 MST 2001","34541018","Tue Feb 27 10:28:53 MST 2001","See Proteases/Hemagglutinin Analysis
Ross BC, Czajkowski L, Hocking D, Margetts M, Webb E, Rothel L, Patterson M, Agius C, Camuglia S, Reynolds E, Littlejohn T, Gaeta B, Ng A, Kuczek ES, Mattick JS, Gearing D, Barr IG, Identification of vaccine candidate antigens from a genomic analysis of Porphyromonas gingivalis, Vaccine 2001 Jul 20;19(30): 4135-42, PMID: 11457538.Ross,B., Barr,I., Patterson,M., Agius,C., Rothel,L., Margetts,M.,Hocking,D. and Webb,E. P. gingivalis polypeptides and nucleic acids. Patent: Australia (AU 98/01023)-PCT 10-DEC-1998.Shibata,Y., Hayakawa,M., Takiguchi,H., Shiroza,T. and Abiko,Y., Determination and characterization of the hemagglutinin-associated short motifs found in Porphyromonas gingivalis multiple gene products, J. Biol. Chem. 274 (8), 5012-5020 (1999), PubMed: 9988746.","","Wed Nov 7 14:52:59 2001","","1","","24","PG1326" "PG1165","1406673","1405366","1308","ATGAATTTTCCAATCGATGAAAAACTGATTCGTGAAAAGCAAAACGAACTGCACATCAAAGACCTCGGCATGGCTTCGATCCGAGATCTGGTAGCTTTGGTGACCAATCTGGAAAAGGCTACCGGCACTAAATTCTGCCGTATGGAAATGGGTGTGCCCGGACTTCCTGCACCTCAGATCGGTATAGAGACGGAGATACAAAAGCTACGCGAAGGAGTAGCTTCGATTTATCCCAATTTGGATGGTCTGCCCGAACTCAAGCAGGAGGCATCGCGCTTTGCCAAACTCTTTGTCAATATCGACATACCGGCACGTGCTTGCGTGCCTACGGTAGGCTCGATGCAGGGATGCTTCGTATCTTTCCTCGTGGCCAATCGCACACACAAAAACCGTGAATACGGTACGCTCTTTATCGACCCCGGGTTCAATCTGAACAAGCTACAGTGTCGCATCCTCGGTCAGAAGTTCGAAAGCTTCGACCTCTTCGAATACCGCGGAGAAAAGTTGCGCGAGAAGCTCGAAAGCTATCTGCAGACAGGACAGTTCTGCTCTATCATCTACTCCAACCCGAACAATCCCACTTGGCAGTGCATGACGGACGAAGAACTGCGCATCATCGGTGAGCTGGCGACCAAACATGATGTTATCGTCATAGAAGACTTGGCATACTTCGGCATGGATTTCCGTAAGGACTATTCCCATCCGGGTGAGCCGCTCTATCAACCTTCCGTAGCCAACTACACGGACAATTATATACTGGCTCTCTCCAGCTCCAAGGCATTCAGCTATGCCGGTCAGCGCATCGGAGTACTCATGATATCGGGCAAGCTCTACGAGCGTGAGTATCCGGACTTGGAAGAGTCATTCGGGCGTCTGCGTTTCGGCGAGGCATTGTCATCATCGGCTCTGTATGCTCTGTCTTCGGGAGCCACTCACTCTGCACAATGGGGTATGGCTGCCATGCTCAAAGCCTGCAATGATGGAGAATATAACTTCCGCGACTCTGTAATCGAATATGGCCGGAAGGCTCGGATCATGAAGAAAATGTTCCTTGACAACGGCTTCAATATCGTCTATGATAAGGACGGCAATGAACCACTGGCTGACGGATTCTACTTCACAGTCGGTTATAAGGGGATGGATAGCAGCAAGTTGATCGAGAAGTTTGTGCGCTACGGTATGTGTGCCATCACGCTAAAAACGACAGGCAGCAAGCGCAACGAAGCGATGCGTATCTGTACGTCGCTCCTACCCGAAAGCCAATTCCCTGATCTGGAGAAGCGACTCCAAATGCTGAACGCCGAAGGA","6.10","-3.18","49280","MNFPIDEKLIREKQNELHIKDLGMASIRDLVALVTNLEKATGTKFCRMEMGVPGLPAPQIGIETEIQKLREGVASIYPNLDGLPELKQEASRFAKLFVNIDIPARACVPTVGSMQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQCRILGQKFESFDLFEYRGEKLREKLESYLQTGQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAFSYAGQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLDNGFNIVYDKDGNEPLADGFYFTVGYKGMDSSKLIEKFVRYGMCAITLKTTGSKRNEAMRICTSLLPESQFPDLEKRLQMLNAEG","1406673 1405366","TIGR ID: PG1327","probable aspartate aminotransferase","Cytoplasm","A few significant and weak hits to aspartate aminotransferase in gapped BLAST; e.g. residues 20-277 are 25% similar to gb|AAB97984.1| aspartate aminotransferase (aspB1) of Methanococcusjannaschii, residues 39-270 are 25% similar to gb|AAK05928.1|AE006413_4 aspartate aminotransferase of Lactococcuslactis subsp. lactis, residues 27-272 are 24% similar to gb|AAD36765.1|AE001810_4 aspartate aminotransferase of Thermotoga maritima.This sequence is similar to BT1077.","
InterPro
IPR015421
Domain
Pyridoxal phosphate-dependent transferase, major region, subdomain 1
G3DSA:3.40.640.10\"[57-309]TPyrdxlP-dep_Trfase_major_sub1
InterPro
IPR015424
Domain
Pyridoxal phosphate-dependent transferase, major region
SSF53383\"[18-430]TPyrdxlP-dep_Trfase_major
noIPR
unintegrated
unintegrated
PTHR11751\"[62-275]T\"[298-355]TPTHR11751
PTHR11751:SF23\"[62-275]T\"[298-355]TPTHR11751:SF23


","BeTs to 14 clades of COG0436COG name: PLP-dependent aminotransferasesFunctional Class: EThe phylogenetic pattern of COG0436 is AMTKYQVCEBRhUJ---linxNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 58-277 are 26% similar to a (PYRIDOXAL PHOSPHATE AMINOTRANSFERASE TRANSFERASE PROTEIN) protein domain (PD000087) which is seen in AAT1_METJA.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Feb 27 10:50:22 MST 2001","Thu Dec 4 10:37:40 2003","Tue Feb 27 10:50:22 MST 2001","","Tue Feb 27 10:50:22 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 27 10:50:22 MST 2001","-43% similar to PDB:2GB3 Crystal structure of Aspartate aminotransferase (tm1698) from Thermotoga maritima at 2.50 A resolution (E_value = 1.7E_11);","","","No significant hits to the Pfam 11.0 database","Tue May 8 10:27:21 MDT 2001","34541019","","Kuru B, Yilmaz S, Noyan U, Acar O, Kadir T.Microbiological features and crevicular fluid aspartate aminotransferase enzyme activity in early onsetperiodontitis patients.J Clin Periodontol. 1999 Jan;26(1):19-25.PMID: 9923506 ","","Tue Jun 5 14:37:33 MDT 2001","","1","","24","PG1327" "PG1166","1408773","1406719","2055","ATGATAACTCCTCAACTAATCGAACCGTGTACTATTGCGGTGATCGGTGCGTCGCAAGATGTGACAAAACCCGGTGGAAAAGTATTACAAAACATTCTGAACGGCTCGTTTCAGGGTCGTGTATTGGGTGTAAATCCGAAAGTGTCTAACGTACAGGGAGTGGAATGTGTGCCCGATGTGAAAGATCTACCCCAAGTAGATTTGGCTATTTTGGCTATTCCTGCACGTTTCTGCCCACCTACGATCGAGGTGTTGGTGAAAGAAAAAGGGACCAAAGGAATCATCGTATTCTCTGCAGGGTTCTCCGAAATGGGTGCAGAAGGCAAGGCTCTCGAGCGGCAAATGGCCGAACTGGCCAATGAAGCCGGAGCTACCCTGATCGGCCCCAACTGCGTCGGCGTAATGAATCCGCTGCACCAATCGGTATTTACCACTCCGGTGCCGGTACTTACGCCTAAGGGATGCGACTTTATCTCCGGTTCGGGGGCAACTGCTGTATTTATCATGGAGTCGGCTCTGAGCAAGGGGCTTTCTTTCTCATCGGTATATTCGGTCGGCAACGCTGCTCAAACGGGTGTGGAAGATGTGCTCGAACATTTGGACGAGACATTCGATGCTGCCACTTCTTCTCATACACTGCTCCTATATATAGAGACTATCTCCAAACCGAAACGCTTCCTGAAACATGCCAGATCATTGGTACAGAAAGGCTGTCGCATTGCGGCCATCAAATCAGGGACGTCTTCAGACGGGGGACGTGCTGCAGCTTCGCACACAGGTGCCATGCTCAACTCCGATGTGGCTGTAGATGCACTCTTCCGCAAAGCCGGTGTAGTGCGCTGCTACAGCCGTGAAGAACTGGCTACCGTGGGTGCCGTACTTCAACATCCGGTACTCACCGGTAAGAATATGGCTGTGATCACACATGCAGGCGGTCCGGCCGTTATGCTGACGGATGCTCTCTCCAATGGAGGTATGTCCGTACCTCCGATTCCCGAAGAAAAGACTCGCACATTGCTGTCGGAGTTGTTTGACGGTTCTTCCGTGGCTAACCCGATCGACATTCTCGCTACGGGAACAGCAGAGCAATTATCGAAAGTGATCGATACTTGCGAGAAAGATCTGGACACGATAGACGGTATGGTCGTGATTTTCGGTAGCCCCGGACTCTTCGATGTGAGCGATGCTTACGATGTGATACGCGAACAACAGAAAAAATGCAAGAAGCCGATCTATGCCGTACTACCTTCTGTGATCAACGCGAAGGAAGGAATGGAGCGTTTCATTGCTCAGGGAGGCATCCTCTTTGAAGAGGAAGTGGCTTTGGCACGTGCTATCTGCAAGGTCTACCAAACGCCCAAGCCCGAAATGACTGAAGAGAGCGAATTGCCCAAAGCAGCAGAAATCCGCCGTCTGCTCGCCGGCAAGAGCGGTATGCTCGGAACCGGCGATATGCTCCAGCTGTTGGATTTGACCGGTATCACTCGCCCGCAAGAACGTCTGGTGACAACAGAGACAGAAGCTCTGGATGCAGCACGTAGTATCGGTTTCCCATTGGCTATGAAGGTAATGGGACTGGCGCACAAATCCGATGCCGGAGGTGTAATACTGAACGTTTCGACCGAAGAAGGCGTAAAAGAGAGCTTTGGCAAGCTGATGCAAATCAAGGGTGCTGAAGGGGTACAGGTGTCACAGATGGAGAGTGGCGTGGAAGTCTTCATCGGGGTAAAGAAAGAGGGCGAATTCGGTCATCTGATTACCTGCGGTTTGGGCGGTATATTCGTGGAAGTGATGAAAGATATTCGCTGTGCTCTGGCTCCTCTCGGCAAAAACGAAGCACTGGAAATGATCCGTTCGCTCAAGTCCTATCCGATCATTCGCGGTATTCGCGGCAAACAGGGCATCAACGACGAGGTAATCGCCGATACGCTCTGTAAGATCTCCCGTTTGCTGGCTGCAGTGCCCGAGATCGAGGAGATGGACATCAATCCGCTGATGGGACGTGGAGAAAGACTATCGGCCGTAGACGTGGTAGTTCGTCTGAGCGATGCGAAG","5.40","-11.38","72603","MITPQLIEPCTIAVIGASQDVTKPGGKVLQNILNGSFQGRVLGVNPKVSNVQGVECVPDVKDLPQVDLAILAIPARFCPPTIEVLVKEKGTKGIIVFSAGFSEMGAEGKALERQMAELANEAGATLIGPNCVGVMNPLHQSVFTTPVPVLTPKGCDFISGSGATAVFIMESALSKGLSFSSVYSVGNAAQTGVEDVLEHLDETFDAATSSHTLLLYIETISKPKRFLKHARSLVQKGCRIAAIKSGTSSDGGRAAASHTGAMLNSDVAVDALFRKAGVVRCYSREELATVGAVLQHPVLTGKNMAVITHAGGPAVMLTDALSNGGMSVPPIPEEKTRTLLSELFDGSSVANPIDILATGTAEQLSKVIDTCEKDLDTIDGMVVIFGSPGLFDVSDAYDVIREQQKKCKKPIYAVLPSVINAKEGMERFIAQGGILFEEEVALARAICKVYQTPKPEMTEESELPKAAEIRRLLAGKSGMLGTGDMLQLLDLTGITRPQERLVTTETEALDAARSIGFPLAMKVMGLAHKSDAGGVILNVSTEEGVKESFGKLMQIKGAEGVQVSQMESGVEVFIGVKKEGEFGHLITCGLGGIFVEVMKDIRCALAPLGKNEALEMIRSLKSYPIIRGIRGKQGINDEVIADTLCKISRLLAAVPEIEEMDINPLMGRGERLSAVDVVVRLSDAK","1408872 1406719","TIGR ID: PG1328","acyl-CoA synthetase","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 5-665 are 34% similar to gb|AAB90033.1| conserved hypothetical protein of Archaeoglobus fulgidus, residues 2-683 are 31% similar to emb|CAA10043.1| pimeloyl-CoA synthetase of Pseudomonas mendocina, residues 6-682 are 29% similar to gb|AAD44021.1|AF107206_1 acetyl-CoA synthetase of Giardia intestinalis.This sequence is similar to BT2924.","
InterPro
IPR003781
Domain
CoA-binding
PF02629\"[5-101]TCoA_binding
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.720\"[1-134]TG3DSA:3.40.50.720
SSF51735\"[1-140]TSSF51735
SSF52210\"[130-296]T\"[297-451]TCoA_ligase
SSF56059\"[478-684]TSSF56059


","BeTs to 4 clades of COG1042COG name: Acyl-CoA synthetasesFunctional Class: CThe phylogenetic pattern of COG1042 is Am-K----e------------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 157-343 are 32% similar to a (PROTEIN CONSERVED LONG 472AA) protein domain (PD005441) which is seen in O58493_PYRHO.Residues 591-650 are 48% similar to a (PROTEIN CONSERVED LONG 238AA) protein domain (PD150029) which is seen in O59378_PYRHO.Residues 488-589 are 47% similar to a (PROTEIN CONSERVED 238AA LONG) protein domain (PD155265) which is seen in O29075_ARCFU.Residues 488-590 are 35% similar to a (LIGASE SYNTHETASE CARBOXYLASE CARBAMOYL-PHOSPHATE) protein domain (PD000180) which is seen in O29057_ARCFU.Residues 11-133 are 46% similar to a (PROTEIN LIGASE SUCCINYL-COA ALPHA) protein domain (PD001432) which is seen in O29075_ARCFU.","","Thu Jun 14 11:34:12 MDT 2001","","Thu Jun 14 11:34:12 MDT 2001","Thu Jun 14 11:34:12 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:34:12 MDT 2001","Thu Jun 14 11:34:12 MDT 2001","","","Tue May 8 13:28:14 MDT 2001","Fri Dec 19 10:32:39 2003","Tue Feb 27 11:01:11 MST 2001","","Mon Jun 25 09:26:13 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 27 11:01:11 MST 2001","-55% similar to PDB:2CSU Crystal structure of PH0766 from Pyrococcus horikoshii OT3 (E_value = 8.0E_59);-64% similar to PDB:1WR2 Crystal structure of PH1788 from Pyrococcus horikoshii Ot3 (E_value = 6.4E_32);","","","Residues 6 to 115 (E-value = 5.2e-14) place PG1166 in the CoA_binding family which is described as CoA binding domain (PF02629)","Mon Jun 25 09:26:13 MDT 2001","34541020","","","Sanchez,L.B., Morrison,H.G., Sogin,M.L. and Muller,M. 1999. Cloning and sequencing of an acetyl-CoA synthetase (ADP-forming)gene from the amitochondriate protist, Giardia lamblia. Gene 233 (1-2): 225-231. PubMed: 10375639.","","Thu Mar 15 11:34:29 MST 2001","1","","24","PG1328" "PG1166.1","1409057","1409410","354","GTGCCCTGCATCAAGCTTTTGATTTCCATCGACAACGCCGAATCGATACGACTTTTTTCAGTACACGTCAATTGTTTATGTTCGGAAAATTTCTTTATTCATGACTCGAAAAACGTGGCGCGGGAAAATTTTGCTTTTGGCGCGAGAAGTAAAATTTTTACGCGCCAGAACGAAAAAAATCTCGCGCCACCTCTTCCGAAAAACACGAGCCGCAGATGTGTAAAAACTCGCACAGAAAAAGTTGATGTGGGTACAAAAAGAAGAAGAGAGAGGAGGAGAGCCCCGATATCCGATAAAACTACTCACCAGATACCTTCCGAAAACATAAATATCGGATCTGCATCAATAGTGTCC","","","13375","VPCIKLLISIDNAESIRLFSVHVNCLCSENFFIHDSKNVARENFAFGARSKIFTRQNEKNLAPPLPKNTSRRCVKTRTEKVDVGTKRRRERRRAPISDKTTHQIPSENINIGSASIVS","","NO TIGR ID corresponds to this gene.","hypothetical protein","Periplasm, Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","","","Tue Feb 27 11:18:08 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 27 11:18:08 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Feb 27 11:18:08 MST 2001","","","","","","","1","","24","" "PG1167","1409809","1410225","417","ATGAAGAAATTTATTCAGGACTTCAAAGCGTTTGCCCTTAAGGGTAACGTAGTGGACATGGCTGTCGGTGTGATCATCGGTGGCGCATTCGGAAAGATCGTCACCTCGTTGGTGAACGACATCATGATGCCTCCCATCAGTTTGCTGACGGGTGGGGTCAACTTCACAGATCTGAAATTGGTATTGAGCAAGGCTGTCGTCGAAGGCGGAGAGGTCGTGAAACCGGAAGTGTCATGGAACTATGGCAATTTTATCCAGACTACGGTGGACTTCCTGATTTTAGCTTTCGTGATCTTCCTGATGATCAAAGCTATCATGGCTGCCAAGAGGAAAGAAGAGGAGGCACCTGCAGCTCCTGCTCCTACGCCACCTGAAATCGAACTGCTTACAGAGATTCGCGATTTGCTCAAGAAGCAA","6.90","-0.01","15119","MKKFIQDFKAFALKGNVVDMAVGVIIGGAFGKIVTSLVNDIMMPPISLLTGGVNFTDLKLVLSKAVVEGGEVVKPEVSWNYGNFIQTTVDFLILAFVIFLMIKAIMAAKRKEEEAPAAPAPTPPEIELLTEIRDLLKKQ","1409764 1410225","TIGR ID: PG1330","large conductance mechanosensitive channel protein","Inner membrane, Cytoplasm","Numerous significant hits to conductance mechanosensitive channel in gapped BLAST; e.g. residues 4-138 are 61% similar to gb|AAK03648.1| MscL of Pasteurella multocida, residues 5-139 are 58% similar to gb|AAG08002.1|AE004875_8 conductance mechanosensitive channel of Pseudomonas aeruginosa, residues 5-139 are 59% similar to gb|AAF96513.1| large-conductance mechanosensitive channel of Vibrio cholerae.","
InterPro
IPR001185
Family
Large-conductance mechanosensitive channel
PD007253\"[7-49]TMS_channel
PR01264\"[7-21]T\"[90-98]T\"[99-108]TMECHCHANNEL
PF01741\"[4-139]TMscL
TIGR00220\"[4-139]TmscL
PS01327\"[14-27]TMSCL
noIPR
unintegrated
unintegrated
SSF81330\"[13-133]TSSF81330


","BeTs to 4 clades of COG1970COG name: Large-conductance mechanosensitive channel MscLFunctional Class: MThe phylogenetic pattern of COG1970 is -------cebrh---------Number of proteins in this genome belonging to this COG is 1","***** IPB001185 (Large-conductance mechanosensitive channel mscL) with a combined E-value of 2.1e-57. IPB001185A 6-47 IPB001185B 81-113 IPB001185C 128-139","Residues 5-105 are 57% similar to a (MECHANOSENSITIVE CHANNEL LARGE-CONDUCTANCE TRANSMEMBRANE) protein domain (PD007253) which is seen in MSCL_HAEIN.","","Thu Jun 14 11:34:30 MDT 2001","","Thu Jun 14 11:34:30 MDT 2001","Thu Jun 14 11:34:30 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:34:30 MDT 2001","Thu Jun 14 11:34:30 MDT 2001","","","Tue May 8 13:43:59 MDT 2001","Mon Jun 25 09:29:14 MDT 2001","Tue Feb 27 11:36:42 MST 2001","Mon Jun 25 09:29:14 MDT 2001","Mon Jun 25 09:29:14 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 27 11:36:42 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 4 to 139 (E-value = 1.1e-62) place PG1167 in the MscL family which is described as Large-conductance mechanosensitive channel, MscL (PF01741)","Mon Jun 25 09:29:14 MDT 2001","34541021","","","Moe,P.C., Blount,P. and Kung,C. 1998. Functional and structural conservation in the mechanosensitive channel MscL implicates elements crucial for mechanosensation. Mol. Microbiol. 28 (3): 583-592. PubMed: 9632260.","","Tue Feb 27 11:36:42 MST 2001","1","","24","PG1330" "PG1168","1410607","1411761","1155","ATGATTATTGGCATTCCAAAAGAGATTATGCACGGCGAAAACCGTGTGTCGGCTACCCCTGAAACAGTGGCCAAATTTGTAGCAGACGGGTTCAAAGTTCTGTTTGAAAAAGGAGCAGGAGAAGGTGCTCAGTATCATGACGAAGAATATGCCCAGGCAGGTGCTACGCTGGTAGACGGAGCTAAGGCCGTTTATGACGGTGCCGAAGTGATCCTCAAGGTAAAAGAGCCTTTGTTCAACGAACAGCTCAATACGCACGAAGTAGAGCTGATGCGCAAAGGTCAGTATCTGATCACATTCATTCATCCGGCTTCACCGGTGAACCACGAAATGGTACGCAATCTGGCCAAACAGGGTGTTATCTCGCTGACTCTCGATGGTATCCCCCGTATCTCACGTGCACAAAACCTCGACGCACTGACTTCGATGAGTACTTGTGCCGGCTACAAAGGTATCCTGATGGCTGCCGAAGACTTCGCCAGCTTCATCCCGATGATGGGTACGGCTGTCGGTATGATTCCGCCCGCCAAAGTAATGGTGATCGGTGTGGGTGTGGCTGGCTTGCAGGCTTTGGCTACGGCTAAGCGTCTGGGAGCCATCACTTATGCTGCCGATATTCGCCCTGCAGCTGCCGAACAGGCTCAGAGCTTGGGAGCCAAGATCGTGGATACGACCGTTCCTGCCGAACTGGCTATCGCCGAAGGCGGATATGCCAACAAATTGCCCGATGATGTACTGGCCAAAGAACGCGAAGCCCTCAAGGCCACCATTCAGGATATGGATATCGTATTCTGTAGCGCATTGATCCCGGGCAAGGTGGCTCCGATCATCATCACGGAAGAAATGGTGAAGGGTATGAAGCGCGGCTCCGTAATCGTGGACATCTCTATCGACCAGGGCGGTAACTGCGAAATCACGCCGAAGGGAACCAAGGAAGTGAAGCACGGAGTGATGATCCAAGGTATCAAGAACATCCCCGGTATGCTTCCGAAAAGCTCTACTTGGATGTTCGCACAGAACATGTACAATCTGATGAAGTACCTCACAAAGAACGGTCGGATCGAATTGGATATGAACGACGAAGTTTGCAGCAAGATCCTCGTTACTCGCGACGGCGAAATCAAACACGCCGGTACTCGTGAAGCAATGGGTCTG","6.20","-3.48","41289","MIIGIPKEIMHGENRVSATPETVAKFVADGFKVLFEKGAGEGAQYHDEEYAQAGATLVDGAKAVYDGAEVILKVKEPLFNEQLNTHEVELMRKGQYLITFIHPASPVNHEMVRNLAKQGVISLTLDGIPRISRAQNLDALTSMSTCAGYKGILMAAEDFASFIPMMGTAVGMIPPAKVMVIGVGVAGLQALATAKRLGAITYAADIRPAAAEQAQSLGAKIVDTTVPAELAIAEGGYANKLPDDVLAKEREALKATIQDMDIVFCSALIPGKVAPIIITEEMVKGMKRGSVIVDISIDQGGNCEITPKGTKEVKHGVMIQGIKNIPGMLPKSSTWMFAQNMYNLMKYLTKNGRIELDMNDEVCSKILVTRDGEIKHAGTREAMGL","1410607 1411761","Other subunits are immediately downstream, PG1069 (alpha part 2) and PG1070 (beta).TIGR ID: PG1331","NAD(P)+ transhydrogenase subunit alpha 1 (pyridine nucleotide transhydrogenase subunit alpha 1) (nicotinamide nucleotide transhydrogenase subunit alpha 1)","Inner membrane, Cytoplasm","Numerous significant hits to NAD(P)+ transhydrogenase subunit alpha (pyridine nucleotide transhydrogenase subunit alpha) (nicotinamide nucleotide transhydrogenase subunit alpha) in gapped BLAST; e.g. residues 1-374 are 44% similar to gb|AAG56590.1|AE005383_12 pyridine nucleotide transhydrogenase, alpha subunit of Escherichia coli O157:H7, residues 1-376 are 43% similar to gb|AAA62493.1| proton-translocating nicotinamide nucleotide transhydrogenase subunit PntAA of Rhodospirillum rubrum, residues 1-374 are 42% similar to emb|CAB88572.1| related to mitochondrial nicotinamide nucleotidetranshydrogenase of Neurospora crassa.","
InterPro
IPR007698
Domain
Alanine dehydrogenase/PNT, C-terminal
PF01262\"[156-327]TAlaDh_PNT_C
InterPro
IPR007886
Domain
Alanine dehydrogenase/PNT, N-terminal
PF05222\"[4-147]TAlaDh_PNT_N
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.1770\"[1-195]Tno description
PIRSF000183\"[1-385]TAlanine dehydrogenase
PTHR10160\"[1-385]TNADP TRANSHYDROGENASE


","BeTs to 7 clades of COG0686COG name: NAD/NADP transhydrogenase alpha subunitFunctional Class: CThe phylogenetic pattern of COG0686 is ----y--CebRhuj------XNumber of proteins in this genome belonging to this COG is 2","***** IPB000598 (Alanine dehydrogenase and pyridine nucleotide transhydrogenase) with a combined E-value of 2.9e-71. IPB000598A 1-50 IPB000598B 167-219 IPB000598C 269-304","Residues 178-304 are 36% similar to a (NAD DEHYDROGENASE OXIDOREDUCTASE PROTEIN HYDROLASE) protein domain (PD000699) which is seen in O85594_BBBBB.Residues 1-162 are 40% similar to a (OXIDOREDUCTASE TRANSHYDROGENASE DEHYDROGENASE NAD) protein domain (PD002205) which is seen in NNTM_HUMAN.Residues 168-370 are 45% similar to a (TRANSHYDROGENASE NUCLEOTIDE NADP PYRIDINE NICOTINAMIDE) protein domain (PD005311) which is seen in P96832_MYCTU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Wed Mar 27 18:14:47 2002","Wed Mar 27 18:14:47 2002","Tue Feb 27 11:59:08 MST 2001","Wed Mar 27 18:14:47 2002","Tue Feb 27 11:59:08 MST 2001","Tue Feb 27 11:59:08 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 27 11:59:08 MST 2001","-62% similar to PDB:1F8G THE X-RAY STRUCTURE OF NICOTINAMIDE NUCLEOTIDE TRANSHYDROGENASE FROM RHODOSPIRILLUM RUBRUM COMPLEXED WITH NAD+ (E_value = 4.6E_79);-62% similar to PDB:1HZZ THE ASYMMETRIC COMPLEX OF THE TWO NUCLEOTIDE-BINDING COMPONENTS (DI, DIII) OF PROTON-TRANSLOCATING TRANSHYDROGENASE (E_value = 4.6E_79);-62% similar to PDB:1L7D Crystal Structure of R. rubrum Transhydrogenase Domain I without Bound NAD(H) (E_value = 4.6E_79);-62% similar to PDB:1L7E Crystal Structure of R. rubrum Transhydrogenase Domain I with Bound NADH (E_value = 4.6E_79);-62% similar to PDB:1PTJ Crystal structure analysis of the DI and DIII complex of transhydrogenase with a thio-nicotinamide nucleotide analogue (E_value = 4.6E_79);","","","Residues 4 to 147 (E-value = 6.3e-55) place PG1168 in the AlaDh_PNT_N family which is described as Alanine dehydrogenase/PNT, N-terminal domain (PF05222)Residues 154 to 360 (E-value = 5e-67) place PG1168 in the AlaDh_PNT_C family which is described as Alanine dehydrogenase/PNT, C-terminal domain (PF01262)","Tue May 8 13:47:37 MDT 2001","","","","Yamaguchi,M. and Hatefi,Y. 1994. Energy-transducing nicotinamide nucleotide transhydrogenase: nucleotide sequences of the genes and predicted amino acid sequences of the subunits of the enzyme from Rhodospirillum rubrum. J. Bioenerg. Biomembr. 26 (4): 435-445. PubMed: 7844118.","","Tue Feb 27 12:25:54 MST 2001","1","","24","PG1331" "PG1169","1411874","1412185","312","ATGAATCCGATCATTCTTATCATCGTGCTGATAGCTTCCACGCTTATCGGCTACAAGCTGATCAGCAATGTGCCGAGCTTGCTGCATACTCCGCTGATGTCGGGTATGAACGCTCTCTCCGGAGTAACCGTAATCGGAGCTATTGCAGCTGCCGGATTATCTTTCAAGTTCGGGCATGACGGCAAACTCATCCTCGGCCAAATCTTCGGAGGACTGGCCATCATCCTCGCTACCATCAATGTGGTGGGAGGTTTCGGTGTCACGCACCGCATGCTCCGTATGTTTAGCAAGAAAAAGAAAGGAGGCGACCAA","11.30","7.69","10814","MNPIILIIVLIASTLIGYKLISNVPSLLHTPLMSGMNALSGVTVIGAIAAAGLSFKFGHDGKLILGQIFGGLAIILATINVVGGFGVTHRMLRMFSKKKKGGDQ","1411874 1412185","This orf displays similarity to the carboxyl terminal portion (~100 residues) of the pyridine nucleotide transhydrogenase subunit alpha, so is named subunit alpha 2. Other subunits are located immediately up and downstream, PG1068 (alpha 1) and PG1070 (beta).NO TIGR ID corresponds to this gene.","probable NAD(P) transhydrogenase subunit alpha 2(pyridine nucleotide transhydrogenase subunit alpha 2) (nicotinamide nucleotide transhydrogenase subunit alpha 2)","Inner membrane, Cytoplasm","Numerous weak hits to NAD(P) transhydrogenase subunit alpha (pyridine nucleotide transhydrogenase subunit alpha) (nicotinamide nucleotide transhydrogenase subunit alpha) in gapped BLAST; e.g. residues 9-97 are 40% similar to emb|CAC16725.1| NAD(P) transhydrogenase alpha subunit of Streptomyces coelicolor, residues 8-97 are 37% similar to gb|AAK00588.1| pyridine nucleotide transhydrogenase alpha subunit of Rhodobacter sphaeroides, residues 8-97 are 40% similar to gb|AAF41384.1| NAD(P) transhydrogenase, alpha subunit of Neisseria meningitidis MC58.","
noIPR
unintegrated
unintegrated
PTHR10160\"[15-103]TNADP TRANSHYDROGENASE
PTHR10160:SF4\"[15-103]TNADP TRANSHYDROGENASE
signalp\"[1-17]?signal-peptide
tmhmm\"[4-22]?\"[37-57]?\"[63-85]?transmembrane_regions


","BeTs to 4 clades of COG0686COG name: NAD/NADP transhydrogenase alpha subunitFunctional Class: CThe phylogenetic pattern of COG0686 is ----y--CebRhuj------XNumber of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","Residues 7-95 are 40% similar to a (TRANSHYDROGENASE NUCLEOTIDE NADP PYRIDINE NICOTINAMIDE) protein domain (PD004836) which is seen in P96833_MYCTU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Wed Mar 27 18:19:39 2002","Wed Mar 27 18:19:39 2002","Tue Feb 27 12:50:00 MST 2001","Wed Mar 27 18:19:39 2002","","Tue Feb 27 12:50:00 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 27 12:50:00 MST 2001","-47% similar to PDB:1CQI CRYSTAL STRUCTURE OF THE COMPLEX OF ADP AND MG2+ WITH DEPHOSPHORYLATED E. COLI SUCCINYL-COA SYNTHETASE (E_value = );-47% similar to PDB:1CQJ CRYSTAL STRUCTURE OF DEPHOSPHORYLATED E. COLI SUCCINYL-COA SYNTHETASE (E_value = );-47% similar to PDB:1JKJ E. coli SCS (E_value = );-47% similar to PDB:1JLL Crystal Structure Analysis of the E197betaA Mutant of E. coli SCS (E_value = );-47% similar to PDB:1SCU THE CRYSTAL STRUCTURE OF SUCCINYL-COA SYNTHETASE FROM ESCHERICHIA COLI AT 2.5 ANGSTROMS RESOLUTION (E_value = );","","","No significant hits to the Pfam 11.0 database","Tue May 8 13:49:13 MDT 2001","","","","","","","1","","24","" "PG1170","1412185","1414170","1986","ATGAGTCCTACCATCTATTATATACTCTGCGTCCTCCTCTCTCTGATGGTATTGGGGGGAATATCGATGATGAGCCGTGTGAAGACTGCCGTCATGGGCAATACCCTCAGTGCAGTGGCCATGTTGGGCGGTATCATCCTTACCCTTGTTTACAATGAGATCTTGCCTGCCTGGTCGGTTTATATCTTCCTGATTATCGGTGCCGGTATCGGTTGGACGATGGCACAGCGTGTCAAGATGATACAGATGCCTCAGATGGTGGCCTTGCTTAACGGTGTCGGAGGGGCTGCTTCCGCTCTCGTGGGGATTTTGTCTCTCGCAGCTATAGGAATCAATCCGAATAATAACACGGCTGCCGACTATCCGATCTTTTCGCAAGCTACCGGTATGCTGGCACTGACTGTCGGTATGATTACCCTCATAGGTAGCCTTATCGCCGCCGGTAAGCTACACAAACTACTGCCTCAGAGACCGGTGATATGGCCTAACCACTCGATGTTTACCTCTTTGCTACTGATCCTGACCGTGGGATTCGTGGTGCTCGGTTCTGTTTCTATCGAAGGGTTTCCCCTCTTCTGGGCTATCATCGGAGGACTGTTTTTCTCCTCTCTCTTCGGTTTGTTCTTCTCTATCCGTGTCGGTGGAGCGGATATGCCTATTACCATTTCGCTACTGAACTCCCTTAGCGGTGTGGCCGGAGCCATTGCCGGTATGGCTGTGGGCGATATTCTACTCGTAGCCGTAGGAGGTATTGTCGGTGCCAGTGGTCTGTTGCTGACGCAGATTATGTGCCGCGCCATGAACCGCAAGCTCATGTCCATTCTGATGGCTTCGGGAGCAAAAGCAACACCTGCCGCTACAACGCCGACTACTGCTTCAAAACAAGAAAAAGGAGAGGTTGCCGCTCCTGCTCCTGCCAAAGCAGAGAAGACAGCCGGTAGCGTACTGCGCGATGCCAAGCGAGTCATCATCGTACCCGGTTACGGTATGGCATTGGCTCAGGCACAGCACCAAGTAAGACAGCTGGCCGATAAACTTACGGCTAACGGTACGGAAGTTCGCTATGCCATCCATCCGGTGGCGGGTCGTATGCCCGGACACATGAACGTGCTTCTGTGCGAAGCCGATGTGCCCTATGACCAACTCTTCGAGATGGATGCCATCAACGGAGACTTCGCTCAGACGGATGCCGTGGTAGTAATCGGTGCCAACGACGTAATGAACCCTGCTGCTCGCAATGCTGAGGGTACGCCTATATACGGTATGCCCGTGCTGAACGTGGACGATGCTCCCGAAGTAATCATTTGCAACTTCGACCTGAAACCCGGTTACGCAGGTGTGGACAATCCGCTCTATACACGAGCAACGGGTGTATTCCTCAAACTCGGAGATGCCAAGGAATCTCTGGCAGAGATCATGAAGGAAATGGATGCCACAGGCGATACGGCAGCTACTGCTGCTCCTGCCAAAGCAGAGAAGACAGCCGGTAGCGTACTGCGCGATGCCAAGCGAGTCATCATCGTACCCGGTTACGGTATGGCATTGGCTCAGGCACAGCACCAAGTAAGACAGCTGGCCGATAAACTTACGGCTAACGGTACGGAAGTTCGCTATGCCATCCATCCGGTGGCGGGTCGTATGCCCGGACACATGAACGTGCTTCTGTGCGAAGCCGATGTGCCCTATGACCAACTATTCGAGATGGATGCCATCAACGGAGATTTCGCTCAGACGGATGCCGTGGTAGTAATCGGTGCCAACGACGTAATGAACCCTGCTGCTCGCAATGCTGAGGGTACGCCTATATACGGTATGCCCGTGCTGAACGTGGACGATGCTCCCGAAGTAATCATTTGCAACTTCGACCTGAAACCCGGTTATGCAGGTGTGGACAATCCGCTCTACACACGAGCAACGGGTGTATTCCTCAAACTCGGAGATGCCAAGGAATCACTGGCAGAGATCATGAAGGAAATGGACATCGCA","5.40","-8.33","69515","MSPTIYYILCVLLSLMVLGGISMMSRVKTAVMGNTLSAVAMLGGIILTLVYNEILPAWSVYIFLIIGAGIGWTMAQRVKMIQMPQMVALLNGVGGAASALVGILSLAAIGINPNNNTAADYPIFSQATGMLALTVGMITLIGSLIAAGKLHKLLPQRPVIWPNHSMFTSLLLILTVGFVVLGSVSIEGFPLFWAIIGGLFFSSLFGLFFSIRVGGADMPITISLLNSLSGVAGAIAGMAVGDILLVAVGGIVGASGLLLTQIMCRAMNRKLMSILMASGAKATPAATTPTTASKQEKGEVAAPAPAKAEKTAGSVLRDAKRVIIVPGYGMALAQAQHQVRQLADKLTANGTEVRYAIHPVAGRMPGHMNVLLCEADVPYDQLFEMDAINGDFAQTDAVVVIGANDVMNPAARNAEGTPIYGMPVLNVDDAPEVIICNFDLKPGYAGVDNPLYTRATGVFLKLGDAKESLAEIMKEMDATGDTAATAAPAKAEKTAGSVLRDAKRVIIVPGYGMALAQAQHQVRQLADKLTANGTEVRYAIHPVAGRMPGHMNVLLCEADVPYDQLFEMDAINGDFAQTDAVVVIGANDVMNPAARNAEGTPIYGMPVLNVDDAPEVIICNFDLKPGYAGVDNPLYTRATGVFLKLGDAKESLAEIMKEMDIA","1412185 1414170","The alpha subunit is in two parts immediately upstream at PG1068 and PG1069.TIGR ID: PG1332","NAD(P) transhydrogenase subunit beta (pyridine nucleotide transhydrogenase subunit beta) (nicotinamide nucleotide transhydrogenase subunit beta)","Inner membrane, Cytoplasm","Numerous significant hits to NAD(P) transhydrogenase subunit beta (pyridine nucleotide transhydrogenase subunit beta) (nicotinamide nucleotide transhydrogenase subunit beta) in gapped BLAST; e.g. residues 7-476 and 498-659 are 37% and 56% similar (respectively) to fragments (residues 10-458 and 298-458) of gb|AAF96466.1| NAD(P) transhydrogenase, beta subunit of Vibrio cholerae, residues 4-476 and 498-659 are 36% and 55% similar to fragments (residues 7-459 and 299-459) of gb|AAF41382.1| NAD(P) transhydrogenase, beta subunit of Neisseria meningitidis MC58, residues 4-476 and 498-659 are 36% and 55% similar to fragments (residues 7-462 and 302-462) of gb|AAG56589.1|AE005383_11 pyridine nucleotide transhydrogenase, beta subunit of Escherichia coli O157:H7.","
InterPro
IPR004003
Family
NAD(P) transhydrogenase, beta subunit
PF02233\"[28-476]T\"[499-659]TPNTB
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.1220\"[298-482]T\"[484-659]TG3DSA:3.40.50.1220
PTHR10160\"[1-492]TPTHR10160
SSF52467\"[310-479]T\"[493-662]TSSF52467


","BeTs to 4 clades of COG1282COG name: NAD(P)+ transhydrogenase, beta subunitFunctional Class: CThe phylogenetic pattern of COG1282 is -------ce-rh--------xNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 502-659 are 58% similar to a (TRANSHYDROGENASE NUCLEOTIDE NADP PYRIDINE NICOTINAMIDE) protein domain (PD005076) which is seen in P96834_MYCTU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Wed Mar 27 18:20:47 2002","Tue Feb 27 14:09:21 MST 2001","Tue Feb 27 14:09:21 MST 2001","Wed Mar 27 18:20:47 2002","","Tue Feb 27 14:09:21 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 27 14:09:21 MST 2001","-72% similar to PDB:1E3T SOLUTION STRUCTURE OF THE NADP(H) BINDING COMPONENT (DIII) OF PROTON-TRANSLOCATING TRANSHYDROGENASE FROM RHODOSPIRILLUM RUBRUM (E_value = 2.6E_46);-72% similar to PDB:1HZZ THE ASYMMETRIC COMPLEX OF THE TWO NUCLEOTIDE-BINDING COMPONENTS (DI, DIII) OF PROTON-TRANSLOCATING TRANSHYDROGENASE (E_value = 2.6E_46);-72% similar to PDB:1NM5 R. rubrum transhydrogenase (dI.Q132N)2(dIII)1 asymmetric complex (E_value = 2.6E_46);-72% similar to PDB:1PNO Crystal structure of R. rubrum transhydrogenase domain III bound to NADP (E_value = 2.6E_46);-72% similar to PDB:1PNQ Crystal structure of R. rubrum transhydrogenase domain III bound to NADPH (E_value = 2.6E_46);","","","Residues 4 to 476 (E-value = 5.8e-114) place PG1170 in the PNTB family which is described as NAD(P) transhydrogenase beta subunit (PF02233)","Tue May 8 13:49:58 MDT 2001","34541022","","","Clarke,D.M., Loo,T.W., Gillam,S. and Bragg,P.D. 1986. Nucleotide sequence of the pntA and pntB genes encoding the pyridine nucleotide transhydrogenase of Escherichia coli. Eur. J. Biochem. 158 (3): 647-653. PubMed: 3525165.","","Tue Feb 27 14:09:21 MST 2001","1","","24","PG1332" "PG1171","1415518","1414322","1197","ATGAGACTCTCTGCCATTCTTATCGCTTTGATTGTGATGCTGCCTGCTGTGCTTAGCGGGCAGCATTATTATTCCATGGCGGGAGAGCGACTGGAGACGGACAGCATTCGTCCGAACGAACTCTCGGCATCGATCCGAAGTGCGCTTTTCTTTCGGAACAATGAATACAATGCACGTTCGGTCAAAGGTTATACGTTGCCGGGTGCACGGGTTTCCGCTTTTGCCTCTTACTCGCTGCCGGCAGCACATGGTGTGAAGCTTTCGCTCGGAGTATCTACCCTGAACTACTGGGGGGCAAGTCGCTATCCGGCCGGTATCGCTTATTCCGATTTACCTTATTGGACGGACTATAACGACTATGTACGCTTGCGTATCCTGCCTTATGTACAGGCCATGCTGAAGCCGACGGCCACGACTGCTCTCATGCTGGGCAATATAGCCGGTGGTACGGCTCACGGACTGATCGAACCGATCTACAATCCTGAGTTGGATTTGACGGCTGATCCTGAAGCCGGTGTGCAATTTCGGGGTGATTGGACACGTTTCCGAATGGATGTTTGGGTCAATTGGATGAGCATGATTTTCAAAAATGACAATCATCAGGAGTCGTTTGTCTTTGGCTTGTCCACTACTTCGAAATTGTTATCGGGTGAAGGCAAATGGCGACTCGAACTGCCCTTGCAGGCTATTGCCACGCATCGCGGCGGGGAATACAACTGGGCGCAGCAGGATACCGTGCATACATGGGTCAATGGAGCTGTCGGACTTAAGCTTTCGTATCGCCCTCGTACCGACAAACCCATGCAGATTTGGGGATCTGCTTATGGTGTGGCAGCCTTGTCAAGCGGAGGATACTTCCCTTACGAAAGAGGGTGGGGCGGTTATCTTTCTCTCGGAATGGACTTGGAGCACTTCGCTTTTCGTACCGACTATTGGTACGGCAGGCATTACGTTTCTCCCTTTGCTGCACCTTTCGCCAATTCCCTGACGTATGACAAACAGCCTCTTACGAACGGTTGGGGCGATTATATTCGTCTCTATGCCGACTATTCGTGGCGGATGGCACGAAGTGTTTCGTTGGCGGCTGTTGCTCGGGTATGGTTCCAGCCTTCGGATCGTTTTGCGATGAGCCACGCCTTGGAACTGACGATGCGTATCGATCCCAAATTCCCAATAGCTTTTCTGAAAGGCAATCAT","10.00","7.41","44970","MRLSAILIALIVMLPAVLSGQHYYSMAGERLETDSIRPNELSASIRSALFFRNNEYNARSVKGYTLPGARVSAFASYSLPAAHGVKLSLGVSTLNYWGASRYPAGIAYSDLPYWTDYNDYVRLRILPYVQAMLKPTATTALMLGNIAGGTAHGLIEPIYNPELDLTADPEAGVQFRGDWTRFRMDVWVNWMSMIFKNDNHQESFVFGLSTTSKLLSGEGKWRLELPLQAIATHRGGEYNWAQQDTVHTWVNGAVGLKLSYRPRTDKPMQIWGSAYGVAALSSGGYFPYERGWGGYLSLGMDLEHFAFRTDYWYGRHYVSPFAAPFANSLTYDKQPLTNGWGDYIRLYADYSWRMARSVSLAAVARVWFQPSDRFAMSHALELTMRIDPKFPIAFLKGNH","1415518 1414322","TIGR ID: PG1333","hypothetical protein","Outer membrane, Extracellular","No significant hit found in gapped BLAST with E value less than e-04.","
noIPR
unintegrated
unintegrated
signalp\"[1-19]?signal-peptide
tmhmm\"[5-25]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","","Tue Feb 27 14:11:19 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 27 14:11:19 MST 2001","-58% similar to PDB:1JS4 ENDO/EXOCELLULASE:CELLOBIOSE FROM THERMOMONOSPORA (E_value = );-58% similar to PDB:1TF4 ENDO/EXOCELLULASE FROM THERMOMONOSPORA (E_value = );-43% similar to PDB:2D1F Structure of Mycobacterium tuberculosis threonine synthase (E_value = );-58% similar to PDB:3TF4 ENDO/EXOCELLULASE:CELLOTRIOSE FROM THERMOMONOSPORA (E_value = );-58% similar to PDB:4TF4 ENDO/EXOCELLULASE:CELLOPENTAOSE FROM THERMOMONOSPORA (E_value = );","","","No significant hits to the Pfam 11.0 database","Tue Feb 27 14:11:19 MST 2001","34541023","","","","","","1","","24","PG1333" "PG1172","1416495","1415518","978","ATGACAGCAACAGGATTTATCCTTGCGGCTCTGATCATTCTTGTGATAGCCATTATTGCCAATGGCTTGAAGATCGTGCAGCAGTCCGAGACCATGATCATCGAACGACTTGGCAAGTATTATCGTACGCTCAGTTCGGGAGTCAGTATCATCATCCCCTTTATCGACAAACCCCGTCCCATACGCAAGCGCATCGCTTATACACTACCCTCCGGACAGAATGTGGTGCAGTTCAAGGATGATACCCGTATCGACCTACGCGAAACGGTGTACGACTTTGCTCGCCAGAGTGTGATCACGCGTGACAATGTGGTGACGGAGATCAATGCTATTCTCTATTTCCAGATCGTGGATCCCATGCGTGCCATGTATGAGATTTCCAATTTGCCGGATGCCATCGAGAAGCTGACTCAGACGAGTCTGCGTAACGTGATCGGGGAGATGGATTTGGATCAGACGCTGACCAGTCGCGATACCATCAACAGCAAGCTGCGCGAAATCCTCGACGAAGCCACCAACAAATGGGGCGTGAAGGTAAACCGTGTGGAGCTGCAGGACATCAATCCTCCGCGTGATATTCGTGATGCCATGGAGAAGCAGATGCGTGCCGAGCGTGACAAGCGTGCTCAAATCCTCCAGGCCGAAGGACAGCGAGAGGCTTTGATACGCGAATCGGAGGGTAAGATGCAGGAGTCCATCAACCACGCTGAGGGAGAGAAGCAGGCCAAGATTCTCAGAGCCAAAGCTGAGGCAGAGGCTAAGATATTGGTGGCCAAGGCAGAGGCCGAAGCTATCCGCCAGATCAGCGAAGCAGTAGCCGGTAGTGGTGCCAATCCGACCCAATACCTCATTGCCATGCAGTATATCGAAACGCTCAAGGACATCAACAAGGGCGATCAGACCAAGACCGTTTACCTCCCGTTCGAGGCTACCGGTATGCTCGGTGCCTTGGGCGGTATGAAGGATTTGGTGAAAGGA","7.50","0.27","36537","MTATGFILAALIILVIAIIANGLKIVQQSETMIIERLGKYYRTLSSGVSIIIPFIDKPRPIRKRIAYTLPSGQNVVQFKDDTRIDLRETVYDFARQSVITRDNVVTEINAILYFQIVDPMRAMYEISNLPDAIEKLTQTSLRNVIGEMDLDQTLTSRDTINSKLREILDEATNKWGVKVNRVELQDINPPRDIRDAMEKQMRAERDKRAQILQAEGQREALIRESEGKMQESINHAEGEKQAKILRAKAEAEAKILVAKAEAEAIRQISEAVAGSGANPTQYLIAMQYIETLKDINKGDQTKTVYLPFEATGMLGALGGMKDLVKG","1416495 1415518","TIGR ID: PG1334","conserved hypothetical protein (possible secreted protein) (possible protease) (stomatin-like protein)","Cytoplasm, Periplasm","Numerous significant hits in gapped BLAST; e.g. residues 23-314 are 47% similar to emb|CAB94650.1| putative secreted protein of Streptomyces coelicolor A3(2), residues 21-325 are 45% similar to gb|AAD35948.1|AE001753_4 conserved hypothetical protein of Thermotoga maritima, residues 23-324 are 43% similar to gb|AAB85197.1| stomatin-like protein of Methanothermobacter thermautotrophicus, residues 11-325 are 40% similar to AP002552, a putative protease, of E. coli.","
InterPro
IPR001107
Family
Band 7 protein
PF01145\"[22-218]TBand_7
SM00244\"[21-201]TPHB
InterPro
IPR001972
Family
Stomatin
PS01270\"[157-185]TBAND_7
noIPR
unintegrated
unintegrated
PTHR10264\"[4-61]T\"[85-322]TPTHR10264


","BeTs to 15 clades of COG0330COG name: Membrane protease subunits, stomatin/prohibitin homologsFunctional Class: OThe phylogenetic pattern of COG0330 is amTKYqVCEbrHuj--OL--XNumber of proteins in this genome belonging to this COG is 1","***** IPB001972 (Band 7 protein family/Stomatin) with a combined E-value of 1.2e-78. IPB001972A 22-39 IPB001972B 83-128 IPB001972C 136-183 IPB001972D 184-217 IPB001972E 283-298","Residues 148-320 are 47% similar to a (PROTEIN TRANSMEMBRANE PROHIBITIN HFLC MEMBRANE STOMATIN) protein domain (PD001059) which is seen in O26788_METTH.Residues 250-325 are 36% similar to a (HYPOTHETICAL 33.7 KD PROTEIN) protein domain (PD107534) which is seen in YBBK_ECOLI.Residues 33-146 are 41% similar to a (PROTEIN TRANSMEMBRANE HFLK MEMBRANE) protein domain (PD186090) which is seen in YE88_MYCTU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Jun 12 12:38:45 MDT 2001","Tue Jun 12 12:38:45 MDT 2001","Tue Feb 27 14:28:35 MST 2001","Tue Feb 27 14:28:35 MST 2001","Tue Feb 27 14:28:35 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 27 14:28:35 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 23 to 218 (E-value = 1.1e-64) place PG1172 in the Band_7 family which is described as SPFH domain / Band 7 family (PF01145)","Tue Jun 12 12:38:45 MDT 2001","34541024","","","","","","1","","24","PG1334" "PG1173","1416987","1416526","462","ATGTTATTCGAATCGATTACCCCTGTGCAATGGTGGCTGATAGCAGGTATCCTGCTCTTTGTTTTTGAGATTTTTACCCCGGGTTTCTTCTTGGCTTGTTTCGGTATGGGAGCTTTTGCTGCCATTATACCGGCGGCCTTGGGGTTGTCTATTGTGTGGCAGACCGTTTTTTTTATCGTGGCTTCGCTGCTCTCGCTCTTCCTGCTCAGACCTTTTATGCAGAAGAGGGCGCAGAAGGCTCTGCCGCATGTGTCCACCGGAGCGGATGCCCTTGTAGGGCGGAAAGTGCTGGTGACGGAAACCATAGATCCGACGACGGACAAAGGGCGCGTGGCTGTGGATGGAGATGTTTGGACGGCTCGCTCTCTGACAGGGGAGGTGATAGAAAAGGGTATGCGTGTGGAAATCGTATCTTACGAAAGCATTGTCCTGAATGTAGTGGTTCTTGGTAACGACAAACAA","5.90","-0.82","16859","MLFESITPVQWWLIAGILLFVFEIFTPGFFLACFGMGAFAAIIPAALGLSIVWQTVFFIVASLLSLFLLRPFMQKRAQKALPHVSTGADALVGRKVLVTETIDPTTDKGRVAVDGDVWTARSLTGEVIEKGMRVEIVSYESIVLNVVVLGNDKQ","1416987 1416526","TIGR ID: PG1335","conserved hypothetical protein","Inner membrane, Cytoplasm","One significant hit and several weak hits in gapped BLAST; e.g. residues 11-140 are 39% similar to gb|AAD35947.1|AE001753_3 conserved hypothetical protein of Thermotoga maritima, residues 12-137 are 37% similar to emb|CAB94649.1| putative integral membrane protein of Streptomyces coelicolor A3(2), residues 8-153 are 35% similar to gb|AAB85198.1| conserved protein of Methanothermobacter thermautotrophicus.","
InterPro
IPR002810
Family
Nodulation efficiency, NfeD
PF01957\"[11-150]TNfeD


","BeTs to 9 clades of COG1585COG name: Uncharacterized ACRFunctional Class: SThe phylogenetic pattern of COG1585 is amtK-qvcebr---------xNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 12-140 are 36% similar to a (PROTEIN MAV145 CY277.08 PRECURSOR) protein domain (PD032262) which is seen in P71767_MYCTU.Residues 8-153 are 35% similar to a (CONSERVED PROTEIN) protein domain (PD082700) which is seen in O26789_METTH.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Feb 27 14:50:50 MST 2001","Tue Feb 27 14:50:50 MST 2001","Tue Feb 27 14:50:50 MST 2001","","Tue Feb 27 14:50:50 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 27 14:50:50 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Feb 27 14:50:50 MST 2001","34541025","","","","","","1","","24","PG1335" "PG1173.1","1417819","1417502","318","GTGTTGCACTTACTATTGGAAGTTACAAAATCGTTTTCTTACGATCCGCCTTCATTGAGCACAGCATGGCTCGTCATTGCATGGGATCTGCGTCCCTATTTTGCTCCGAATAAGTCGGCATTGCCCTCTATAGTTTCATGGACTGCAACTTTTTATCTCCCATACCCTTTTTCATCTCACGAAGTGGAATCCTTGTACATAAACAATATGCTGATTTTCCAAGATGATACCGCACTGTGTTTGTGGAATGTCCCCAGACCAATTACAGGCTTACGACGAACTGTTATCGTATTTCCGTTTTTCAGTGTTATGATGGAG","","","12229","VLHLLLEVTKSFSYDPPSLSTAWLVIAWDLRPYFAPNKSALPSIVSWTATFYLPYPFSSHEVESLYINNMLIFQDDTALCLWNVPRPITGLRRTVIVFPFFSVMME","","NO TIGR ID corresponds to this gene.","hypothetical protein","Inner membrane, Cytoplasm","No hit found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","","","Tue Feb 27 14:54:50 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 27 14:54:50 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Feb 27 14:54:50 MST 2001","","","","","","","1","","24","" "PG1174","1417956","1418378","423","ATGATAGATTTATTTCAGATCGATACAGGATCTTCTCTGCTTCTACCATTCGCAGATGAAGGTATTCGCGCGGGATTTCCCTCTCCTGCACAGGACTATATGGATATTGCCATTGACCTGAATCATGAGTTGATAACTCACCCATACAGCACGTTCTACGGAAGGGTAAAGGGCAATTCAATGGAAGACGCCCATGTGTTCGACGGCGATATTCTTGTTATAGACAAGTCCCTTGAAGCGCGGGATGGCGATATGGCTGTCTGCTTTTTGGATGGAGAATTTACCCTGAAAACAATCCGCATCAAATCGGAAGAGATTCTACTCGAACCGGCCAACCCCGACTATCCTACCATACATGTATCGGCAGACAACGATTTCGTCATCTGGGGGATCGTAACCTATTGTATTCATAAAATAAGAAGA","4.30","-11.89","15863","MIDLFQIDTGSSLLLPFADEGIRAGFPSPAQDYMDIAIDLNHELITHPYSTFYGRVKGNSMEDAHVFDGDILVIDKSLEARDGDMAVCFLDGEFTLKTIRIKSEEILLEPANPDYPTIHVSADNDFVIWGIVTYCIHKIRR","1417950 1418378","Belongs to the peptidase family S24, also known as the UmuD/LexA family.TIGR ID: PG1337","mucA protein","Cytoplasm, Extracellular","Numerous significant hits in gapped BLAST; e.g. residues 2-136 are 39% similar to pir||ZWECAP mucA protein of Escherichia coli plasmid pKM101, residues 15-141 are 40% similar to gb|AAG33672.1| MucA of Salmonella typhimurium, residues 15-140 are 38% similar to (AF027768) mucA protein of Serratia marcescens.","
InterPro
IPR006197
Family
Peptidase S24, LexA/MucA/RumA/RuvA
PR00726\"[52-62]T\"[63-74]T\"[91-103]TLEXASERPTASE
InterPro
IPR006198
Domain
Peptidase S24, S26A and S26B
PF00717\"[55-123]TPeptidase_S24
InterPro
IPR011056
Domain
Peptidase S24 and S26, C-terminal region
G3DSA:2.10.109.10\"[25-141]TPept_S24_S26_C
SSF51306\"[12-138]TPept_S24_S26_C


","BeTs to 4 clades of COG1974COG name: SOS-response transcriptional repressors (LexA homologs, RecA-mediated autopeptidases)Functional Class: K,TThe phylogenetic pattern of COG1974 is ------vcEbrh---------Number of proteins in this genome belonging to this COG is 1","***** PF01726 (LexA DNA binding domain) with a combined E-value of 3.4e-13. PF01726B 15-49 PF01726C 51-96 PF01726D 124-138","Residues 25-136 are 41% similar to a (LEXA REPRESSOR SOS HYDROLASE) protein domain (PD001529) which is seen in MUCA_SALTY.","","Thu Jun 14 11:35:04 MDT 2001","","Thu Jun 14 11:35:04 MDT 2001","Thu Jun 14 11:35:04 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:35:04 MDT 2001","Thu Jun 14 11:35:04 MDT 2001","","Mon Jun 25 09:33:22 MDT 2001","Tue Feb 27 15:24:01 MST 2001","Mon Jun 25 09:33:22 MDT 2001","Tue Feb 27 15:24:01 MST 2001","Mon Jun 25 09:33:22 MDT 2001","Mon Jun 25 09:33:22 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 27 15:24:01 MST 2001","-64% similar to PDB:1UMU STRUCTURE DETERMINATION OF UMUD' BY MAD PHASING OF THE SELENOMETHIONYL PROTEIN (E_value = 4.4E_21);-65% similar to PDB:1I4V SOLUTION STRUCTURE OF THE UMUD' HOMODIMER (E_value = 9.9E_21);-64% similar to PDB:1AY9 WILD-TYPE UMUD' FROM E. COLI (E_value = 1.3E_17);","","","Residues 14 to 124 (E-value = 1.4e-27) place PG1174 in the Peptidase_S24 family which is described as Peptidase family S24 (PF00717)","Mon Jun 25 09:33:22 MDT 2001","34541026","","","Perry,K.L., Elledge,S.J., Mitchell,B.B., Marsh,L. and Walker,G.C. 1985. umuDC and mucAB operons whose products are required for UV light- and chemical-induced mutagenesis: UmuD, MucA, and LexA proteins share homology. Proc. Natl. Acad. Sci. U.S.A. 82 (13): 4331-4335. PubMed: 2989816. ","","Tue Feb 27 15:24:01 MST 2001","1","","24","PG1337" "PG1175","1418389","1419684","1296","ATGTATGCCCTCTTAGACTGCAACAACTTCTTCGTCAGTTGCGAAAGGGTGTTCGACCCCTCGCTCCGAAACAGGCCGGTCGTTGTCCTCTCCAATAACGATGGTTGTATCATCGCTCGCAGCAATGAAGCCAAAGCATTGGGGATAGGGATGGGACAACCTTTCTTCAAGGTGCAGGACTTGATTCGCCGGCACAATGTGGCATTCTTCAGCTCGAACTTCATTCTCTACGGCGATATGTCCCGACGAATCATGTCGCTTGTATCGGAACTTGTACCTCGGATGTCGATCTATTCGATAGACGAGTGTTTCATGGATTTGAGAGGAGTGAAAGATTATATGTCGCTATGCCACATGATAGTCGATAGAGTCCGCCAATGTACGGGTATACCGGTGAGTATAGGTGTAGCCGATACGATGACCCTGTCCAAAGTGGCAGACAAATATGCCAAGAGGTATGCGGGTTACAAGGGCGTATGCGCCATAGACTCCGAAGAAAAGAGGAGAAAGGCTCTGCAAACGTTCGATGTAAGCGATGTATGGGGAATAGGGCGCAGACTATCTCGCAAGCTATACTATTATGGTATCAATACGGCAGCCGACTTTGCTTCGATGAGAGAAGGTCGGGTATATCGTTTGGCCGGCACTTCGGGCGTCAGGACATGGCAGGAGCTTAGGGGCGAAGCCTGCAAAGAGATGAAATTGCCACAGCCTCGCCAAAGTGTCTGCACCACGCGCTCTTTCGGCCATCCATGCCGAGATTTTGACTCCCTTCTCAGGCATTTGGCTGTTTTCGCCGATAGTTGCTGTACGAAGATACGTGAAGAAAAGAGCAGGGCACGCCGTTTGAGTATCTTTATAAGCTGTAGCCGATTTGATCAGGAGAACGACTATTCCGGCCGGAATGAGATGCTCCTTCCCGTAGCTACTTCTGACCCTTCAGAACTGATCCCAAAGATTCGCACCCTGCTACAAGAGATTTATCGACCAAATCTGCCCTACAAACAGGCAGGGGTGATCTTGTCCGACTTGGTAGCGGAGGCCTATCAGCTCAATCTTTTCGACCCGATCGATCGCATGCGGCAGGAGCGTTTCTTATCCTCTGTGGATGCGATCCGCCAGCGTTTCGGAAGAGATAGTCTGACCGTTGCTACCCAAGAAACAGAAGCTATAGCATCTGTCTCTTCGATCAAGCATCGTTCGCGCAGATATACGACCGATATGAACGAGGTCATAGATGTCGTTCTGCCCGATCAGCGAAAAAGCGGAGAAAAAAAATCGACGATCAACAGCCGG","9.60","15.61","49320","MYALLDCNNFFVSCERVFDPSLRNRPVVVLSNNDGCIIARSNEAKALGIGMGQPFFKVQDLIRRHNVAFFSSNFILYGDMSRRIMSLVSELVPRMSIYSIDECFMDLRGVKDYMSLCHMIVDRVRQCTGIPVSIGVADTMTLSKVADKYAKRYAGYKGVCAIDSEEKRRKALQTFDVSDVWGIGRRLSRKLYYYGINTAADFASMREGRVYRLAGTSGVRTWQELRGEACKEMKLPQPRQSVCTTRSFGHPCRDFDSLLRHLAVFADSCCTKIREEKSRARRLSIFISCSRFDQENDYSGRNEMLLPVATSDPSELIPKIRTLLQEIYRPNLPYKQAGVILSDLVAEAYQLNLFDPIDRMRQERFLSSVDAIRQRFGRDSLTVATQETEAIASVSSIKHRSRRYTTDMNEVIDVVLPDQRKSGEKKSTINSR","1418389 1419684","TIGR ID: PG1338","SOS mutagenesis and repair protein","Cytoplasm, Periplasm","Numerous significant hits in gapped BLAST; e.g. residues 1-411 are 37% similar to prf||2112258B rumB gene of Escherichia coli, residues 1-414 are 39% similar to gb|AAC74268.1| SOS mutagenesis and repair of Escherichia coli K12, residues 1-414 are 39% similar to gb|AAA24729.1| UmuC protein of Escherichia coli.","
InterPro
IPR001126
Domain
UMUC-like DNA-repair protein
PF00817\"[5-346]TIMS
PS50173\"[2-184]TUMUC
noIPR
unintegrated
unintegrated
G3DSA:3.30.70.270\"[66-151]TG3DSA:3.30.70.270
PTHR11076\"[4-402]TPTHR11076
PTHR11076:SF8\"[4-402]TPTHR11076:SF8
SSF100879\"[237-343]TSSF100879
SSF56672\"[2-272]TSSF56672


","BeTs to 5 clades of COG0389COG name: Nucleotidyltransferase/DNA polymerase involved in DNA repairFunctional Class: LThe phylogenetic pattern of COG0389 is ----Y--cEBR---gp-----Number of proteins in this genome belonging to this COG is 1","***** PF00817 (impB/mucB/samB family) with a combined E-value of 6.3e-37. PF00817A 6-32 PF00817B 95-106 PF00817C 117-153 PF00817D 175-203","Residues 30-116 are 62% similar to a (PLASMID PROTEIN SOS MUTAGENESIS) protein domain (PD036904) which is seen in UMUC_ECOLI.Residues 129-374 are 33% similar to a (PLASMID PROTEIN SOS MUTAGENESIS) protein domain (PD006881) which is seen in Q44054_PRORE.Residues 5-184 are 31% similar to a (PROTEIN CHROMOSOME DNA-DAMAGE-INDUCIBLE P SIMILAR II) protein domain (PD002051) which is seen in Q10787_MYCTU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Feb 27 15:52:24 MST 2001","Tue Feb 27 15:52:24 MST 2001","Tue Feb 27 15:52:24 MST 2001","Tue Feb 27 15:52:24 MST 2001","Tue Feb 27 15:52:24 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 27 15:52:24 MST 2001","-49% similar to PDB:1JX4 Crystal Structure of a Y-family DNA Polymerase in a Ternary Complex with DNA Substrates and an Incoming Nucleotide (E_value = 1.8E_18);-49% similar to PDB:1JXL Crystal Structure of a Y-Family DNA Polymerase in a Ternary Complex with DNA Substrates and an Incoming Nucleotide (E_value = 1.8E_18);-49% similar to PDB:1N48 Y-family DNA polymerase Dpo4 in complex with DNA containing abasic lesion (E_value = 1.8E_18);-49% similar to PDB:1N56 Y-family DNA polymerase Dpo4 in complex with DNA containing abasic lesion (E_value = 1.8E_18);-49% similar to PDB:1RYR REPLICATION OF A CIS-SYN THYMINE DIMER AT ATOMIC RESOLUTION (E_value = 1.8E_18);","","","Residues 5 to 346 (E-value = 1.3e-80) place PG1175 in the IMS family which is described as impB/mucB/samB family (PF00817)","Tue May 8 14:06:24 MDT 2001","34541027","","","Kitagawa,Y., Akaboshi,E., Shinagawa,H., Horii,T., Ogawa,H. and Kato,T. 1985. Structural analysis of the umu operon required for inducible mutagenesis in Escherichia coli. Proc. Natl. Acad. Sci. U.S.A. 82 (13): 4336-4340. PubMed: 2989817.","","Tue Feb 27 15:52:24 MST 2001","1","","24","PG1338" "PG1176","1421941","1420394","1548","ATGGATGTTATTCTCTCGATTCTACCCATCGTTCTCCTCATCGTTTTGATGCTTGGGCTTAGGATGGCGGGTGACAAGAGTGCTGTTCTGGCACTTGTTTGTGCAGCATTGGTAGCTTTATTCGCAGCTCCTGCCCTCGGATTTGCCCCTACAGATTTTACCCGGACAGGTGTCGGATGGGCTTTTGTGGAAGGTGCCCTCAAGGCTATCTTCCCTATTTTGATTATCATTTTGATGGCTATATACAGCTATAATGTACTACTCGAATCCGGTAAAATCGAGATCATCAAGAAACAATTTACCGGCATAAGCCAGGACAAAAGCATCCAAGTCCTATTGCTTGTATGGGGATTCGGAGGTCTCCTTGAAGGAATGGCCGGTTTTGGTACGGCAGTAGCTATACCGGCAGCCATCCTTATCAGTCTGGGATTTAAACCCGGGTTCTCCGCATTGGTCAGTCTGATAGCCAATAGTGTAGCTACGGGTTTCGGTGCAGTAGGAGTACCTGTAACGACATTGGCCAATGAGATAGCGGCCAACGGTGCGGCCACAGCCGGAGAGATTCAGGCCATCAGTGCACACGTTGTACTCCAACTTTCTGTGCTGATGTTCATCATTCCATACATCATTCTTTTCCTGACGGACAGGAGTGCCAAGAGCCAGCCCAAGAATATCATTCTTGCCTTGCTGGTAGGAGGAGTTTCTTTGGCAGTGCAGTATGCTTCGGCACGCTATCTGGGAGCAGAAACGCCGGCTATATTCGGTAGTATTGTCGCTATAATCGTCATTATCACCTTTGCCAAATTGACGGCCAAGAAAGCTGCAGATACGTCTGTGGCTCTTGAGAAGTACAGCGGCAAGCAGATTTTCGAAGCATGGAGCGTCTATCTCTTTATTCTATTCTTCATTGTGCTGGCCAGCCCGGTGAGTGGTCCCGTAAGCGATTTCCTCAAGTCCAATTTGGTATCAAAAATAGCTCTGCCTATCTACCATGATGGTAAGACGTTCAATTTCGGCTGGCTTAGCAATGCAGGTCTTATGCTCTTCCTCGGAGCTTTTATCGGAGGCTTGGTACAGGGAGTTTCAGCCGGAAAGCTATTCGCCATTTTGGGGAAAACCATTATCGGGCTGAGGAAAAGCGGTGTCACCATCATCAGTCTTGTAGCAATGAGTGCCATCATGACTTATAGCGGAATGATACTTGTCATCGCTACGGCATTGGCCGAGGCCACCGGAACGCTCTATCCCCTGTTTGCTCCGCTCATAGGTGCCGTAGGAACCTTTGTCACAGGTAGCGATACTTCGTCCAATATCCTCTTCGGCAAGTTGCAGGCAGGAGTAGCTCATCAGATCGGTGTGGATGCCCAGTGGCTGGCTGCAGCCAATACGGCAGGAGCTACGGGAGGAAAGATCATTTCGCCACAGAGCATTGCCATTGCTACGGCATCTTGCAACCAACAGGGCGAGGAAGGCAGCATCCTCCGTTCTGCCATTCCTTATGCTCTCTTCTATGTGGTGGTCGTAGGTCTGATGGTTTACTTCCTGGCC","9.80","6.62","53482","MDVILSILPIVLLIVLMLGLRMAGDKSAVLALVCAALVALFAAPALGFAPTDFTRTGVGWAFVEGALKAIFPILIIILMAIYSYNVLLESGKIEIIKKQFTGISQDKSIQVLLLVWGFGGLLEGMAGFGTAVAIPAAILISLGFKPGFSALVSLIANSVATGFGAVGVPVTTLANEIAANGAATAGEIQAISAHVVLQLSVLMFIIPYIILFLTDRSAKSQPKNIILALLVGGVSLAVQYASARYLGAETPAIFGSIVAIIVIITFAKLTAKKAADTSVALEKYSGKQIFEAWSVYLFILFFIVLASPVSGPVSDFLKSNLVSKIALPIYHDGKTFNFGWLSNAGLMLFLGAFIGGLVQGVSAGKLFAILGKTIIGLRKSGVTIISLVAMSAIMTYSGMILVIATALAEATGTLYPLFAPLIGAVGTFVTGSDTSSNILFGKLQAGVAHQIGVDAQWLAAANTAGATGGKIISPQSIAIATASCNQQGEEGSILRSAIPYALFYVVVVGLMVYFLA","1421941 1420394","TIGR ID: PG1340","L-lactate permease","Inner membrane, Cytoplasm","Numerous significant hits to L-lactate premease in gapped BLAST; e.g. residues 61-515 are 32% similar to gb|AAC66970.1| L-lactate permease of Borrelia burgdorferi, residues 60-516 are 27% similar to gb|AAF11456.1|AE002029_5 L-lactate permease, putative of Deinococcus radiodurans, residues 82-513 are 26% similar to pir||A70038 L-lactate permease homolog of Bacillus subtilis.This sequence is similar to BT1453.","
InterPro
IPR003804
Family
L-lactate permease
PF02652\"[1-515]TLactate_perm
TIGR00795\"[1-516]TlctP


","BeTs to 5 clades of COG1620COG name: L-lactate permeaseFunctional Class: CThe phylogenetic pattern of COG1620 is a-------EB-hUJ--o----Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 82-458 are 34% similar to a (PERMEASE L-LACTATE PROTEIN TRANSPORT) protein domain (PD005507) which is seen in O33654_BBBBB.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Feb 27 16:15:35 MST 2001","Thu Dec 4 15:32:37 2003","Tue Feb 27 16:15:35 MST 2001","","Tue Feb 27 16:15:35 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 27 16:15:35 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 1 to 515 (E-value = 5.3e-114) place PG1176 in the Lactate_perm family which is described as L-lactate permease (PF02652)","Tue May 8 14:09:44 MDT 2001","34541028","","","Gibello,A., Collins,M.D., Dominguez,L., Fernandez-Garayzabal,J.F. and Richardson,P.T. 1999. Cloning and analysis of the L-lactate utilization genes from streptococcus iniae. Appl. Environ. Microbiol. 65 (10): 4346-4350. PubMed: 10508058. ","","Tue Feb 27 16:15:35 MST 2001","1","","24","PG1340" "PG1177","1422174","1422725","552","ATGAGTCGATCCCGAATATGGCTGTTTTCATTGAAAACTCTATCTTTGCGCATGGGAGTATTAATAACTCAAACAGAAAAAAAGATGAATAAGATGGTTGTTTTGGCAGCCGCCATAGCTATGACGGTTGCATTCGGCTCATGCAAATCCAAGCAAAGTGCCTACCGCCAAGCTTACGAGCAGGCCAAAGAACGTGAGATTGCCCAAGCTGAAGACAAGGATATGGAAACTCGTCCGATAGTTTCTAAACCGGCTACCAATGTACAAATCCGTCAAGAAAAGCTCTCTGCTTACAGTGGGGAAGATGCTTCTCGATTGGATCGGTTCAGTGTAGTGGTAGGCAGCTTCCGCAATGCAACGAATGCTCGTTCTCTGAAAGAACGCTTGGAATCTGAAGGTTATACCCCTATTTTGGCAGAAAACGAACAGGGGATGCTACGTGTGATCGTAGCCAGCTTCCCTTCACGCGAAGAGGCCATCGCTGCCCGTGAGGCCGTCAAGGAACGCTATGCTCCGAATTTTCAGGATGCATGGCTGCTTGAGCGTGCTAAC","10.30","5.96","20756","MSRSRIWLFSLKTLSLRMGVLITQTEKKMNKMVVLAAAIAMTVAFGSCKSKQSAYRQAYEQAKEREIAQAEDKDMETRPIVSKPATNVQIRQEKLSAYSGEDASRLDRFSVVVGSFRNATNARSLKERLESEGYTPILAENEQGMLRVIVASFPSREEAIAAREAVKERYAPNFQDAWLLERAN","1422114 1422725","Veith et al. (2002) identified this protein by two-dimensional gel electrophoresis and peptide mass fingerprinting of outer membranes prepared from strain W50. This protein contains a putative lipoprotein signal sequence.TIGR ID: PG1341","probable outer membrane lipoprotein P15","Periplasm","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR007730
Domain
Sporulation/cell division region, bacteria
PF05036\"[105-176]TSPOR
noIPR
unintegrated
unintegrated
SSF110997\"[104-180]TSSF110997


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 11:35:20 MDT 2001","","Thu Jun 14 11:35:20 MDT 2001","Thu Jun 14 11:35:20 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:35:20 MDT 2001","Thu Jun 14 11:35:20 MDT 2001","","Thu Feb 7 15:49:38 2002","Mon Feb 11 12:16:31 2002","","Tue Feb 27 16:17:43 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 27 16:17:43 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Feb 7 15:49:38 2002","34541029","","Veith,P., Talbo,G., Slakeski,N., Dashper,S., Moore,C.,Paolini,R., Reynolds,E., Major outer membrane proteins and proteolytic processing of RgpA, and Kgp of Porphyromonas gingivalis W50, Biochem J. 2002 (in press).","","Thu Feb 7 15:49:38 2002","","1","","24","PG1341" "PG1178","1422728","1423741","1014","ATGGACATCAGACAAGACTATCCACTCTCCAAGCGCAATACATTCGGTATTGCAGCCCGGACAGATTGGTGGATTGACTACACATGCGACGCCGATATTGATCGGTTGGTGAAAGACGAATTCTTTCAAGATTGTCGCGTACAAACTATTGGCGAGGGGAGCAATCTGCTCTTCCTCGCTAATTTTCATGGTATACTGCTTCATTCCGAAGTAAAGGGTATCACCGAACTGCACAAGGATCAGGACAGCATTCTTTTGCGTGTAGGGTCGGGTATGGTATGGGACGACTTCGTCGCTTATGCCGTGGAGAATAACTATTATGGTATAGAGAACCTCTCTCTCATTCCGGGCCAAGTGGGAGCATCGGCTGTCCAAAACATCGGAGCCTATGGAGTAGAAGTATCTCAGCTGATCGAGGCGGTTCATGCTCGTCATTACCGAACAGGAGAATCCCGTGTATTTCGCAATGAGGACTGCAGATACGCATACAGATACAGTATCTTCAAAGAACCGGACTATGCCGAATGGACTATTATGTATGTGGACTATCGTCTGCGTCTGAAGCCCTCTTTCTCACTTGAATACAAAGCCTTGGCCAAGGTTTTGGAAGAAGAACGAATCACCCCTACCCTACAATCGATTCGAGATACGGTCATACGCATCCGCAATTCCAAGTTGCCCGATCCGGCCACAATAGGCAATGCGGGCAGCTTCTTCGTAAATCCGGTGGTATCCGCCGAGAAATTCAATACCCTGCAAACCGAATATCCCTCCATACCAAGCTATCCTCAACCGGATGGCAGCGTGAAAGTTCCGGCCGGATGGCTGATCGAGCAATGCGGATACAAAGGGCATCGCTCCGGTGCAGTAGGTGTCTATGAGCATCAGGCTTTGGTCTTGGTGAACTATGGCGGAGCTACGGGCACTCAGGTGGGAGCTTTGGCAGAAGAGATCATAGGCAATGTCCGACAGAAATTCGGAATCACTCTCCATCCGGAGGTCAAATACATTTTA","5.70","-6.24","38107","MDIRQDYPLSKRNTFGIAARTDWWIDYTCDADIDRLVKDEFFQDCRVQTIGEGSNLLFLANFHGILLHSEVKGITELHKDQDSILLRVGSGMVWDDFVAYAVENNYYGIENLSLIPGQVGASAVQNIGAYGVEVSQLIEAVHARHYRTGESRVFRNEDCRYAYRYSIFKEPDYAEWTIMYVDYRLRLKPSFSLEYKALAKVLEEERITPTLQSIRDTVIRIRNSKLPDPATIGNAGSFFVNPVVSAEKFNTLQTEYPSIPSYPQPDGSVKVPAGWLIEQCGYKGHRSGAVGVYEHQALVLVNYGGATGTQVGALAEEIIGNVRQKFGITLHPEVKYIL","1422728 1423741","TIGR ID: PG1342","UDP-N-acetylpyruvoylglucosamine reductase (UDP-N-acetylmuramate dehydrogenase)","Cytoplasm","Numerous significant hits to UDP-N-acetylenolpyruvoylglucosamine reductase (UDP-N-acetylmuramate dehydrogenase) in gapped BLAST; e.g. residues 3-337 are 42% similar to pir||C81950 probable UDP-N-acetylmuramate dehydrogenase of Neisseria meningitidis (group A strain Z2491), residues 1-333 are 42% similar to gb|AAG06365.1|AE004723_9 UDP-N-acetylpyruvoylglucosamine reductase of Pseudomonas aeruginosa, residues 50-337 are 43% similar to gb|AAC21934.1| UDP-N-acetylenolpyruvoylglucosamine reductase of Haemophilus influenzae Rd. ","
InterPro
IPR003170
Family
UDP-N-acetylenolpyruvoylglucosamine reductase
PTHR21071\"[24-337]TMurB
TIGR00179\"[9-338]TmurB
InterPro
IPR006094
Domain
FAD linked oxidase, N-terminal
PF01565\"[46-143]TFAD_binding_4
InterPro
IPR011601
Domain
UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal
PF02873\"[211-338]TMurB_C
noIPR
unintegrated
unintegrated
G3DSA:3.30.43.10\"[7-72]TG3DSA:3.30.43.10
G3DSA:3.30.465.10\"[74-226]TG3DSA:3.30.465.10
G3DSA:3.90.78.10\"[227-338]TG3DSA:3.90.78.10
SSF56176\"[7-205]TSSF56176
SSF56194\"[209-337]TSSF56194


","BeTs to 11 clades of COG0812COG name: UDP-N-acetylmuramate dehydrogenaseFunctional Class: MThe phylogenetic pattern of COG0812 is -----Qvcebrhuj--olinxNumber of proteins in this genome belonging to this COG is 1","***** BP04983 (CELL REDUCTASE UDP-N-ACETYLENOLPYRUVOYLGLUCOSA) with a combined E-value of 7.9e-58. BP04983B 50-69 BP04983C 108-133 BP04983D 214-268 BP04983E 292-338 BP04983B 85-104","Residues 88-186 are 38% similar to a (UDP-N-ACETYLENOLPYRUVOYLGLUCOSAMINE REDUCTASE EC) protein domain (PD111573) which is seen in MURB_HAEIN.Residues 201-337 are 48% similar to a (REDUCTASE UDP-N-ACETYLENOLPYRUVOYLGLUCOSAMINE) protein domain (PD004983) which is seen in MURB_SALTY.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Feb 27 17:02:20 MST 2001","Tue Feb 27 17:02:20 MST 2001","Tue Jan 7 14:33:46 2003","Tue Feb 27 16:30:52 MST 2001","Tue Feb 27 16:30:52 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Feb 27 16:30:52 MST 2001","-57% similar to PDB:1MBB OXIDOREDUCTASE (E_value = 8.3E_61);-57% similar to PDB:1MBT OXIDOREDUCTASE (E_value = 8.3E_61);-57% similar to PDB:2MBR MURB WILD TYPE, COMPLEX WITH ENOLPYRUVYL-UDP-N-ACETYLGLUCOSAMINE (E_value = 1.1E_60);-57% similar to PDB:1UXY MURB MUTANT WITH SER 229 REPLACED BY ALA, COMPLEX WITH ENOLPYRUVYL-UDP-N-ACETYLGLUCOSAMINE (E_value = 2.4E_60);-40% similar to PDB:1HSK CRYSTAL STRUCTURE OF S. AUREUS MURB (E_value = 9.0E_15);","","","Residues 211 to 338 (E-value = 3.1e-44) place PG1178 in the MurB_C family which is described as UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain (PF02873)","Tue May 22 15:22:18 MDT 2001","34541030","","","Pucci,M.J., Discotto,L.F. and Dougherty,T.J. 1992. Cloning and identification of the Escherichia coli murB DNA sequence, which encodes UDP-N-acetylenolpyruvoylglucosamine reductase. J. Bacteriol. 174 (5): 1690-1693. PubMed: 1311302.","","Tue Feb 27 17:02:20 MST 2001","1","","24","PG1342" "PG1179","1423771","1425246","1476","ATGCGTTGCATATTATTAGGCTCAGGCACCAGCACCGGCGTCCCCGAAGTCGGCTGTCATTGTAGGGTATGTCGTAGCGAAGACAGGCATGACAAGCGCACCCGTACTTCTCTTCTTATAATCACGGATGCAGGGAAACGAATCCTCATCGACTGCAGCCCGGACTTTCGCCAACAAGCTCTGTTTGCCGGCATCGATTCGCTCGATGCCGTTTTGCTGACTCACGAACATTTTGACCACGTCGGTGGACTCGACGATCTGCGCACCATCTGTTGGCATCGCGAACTTGCTGTCTATGCCGAACAGAATGTATTGGACTCCATACGCGACAGGCTGCACTATGTATTCCGCAAAAATCCTTATCCGGGCACTCCTCTACTGAAACTATGCGAAGTAAAACCCGATATGCCGTTTCAAGTGGCAGACCTGACGGTAGAGCCTCTTCGAATAATGCATGGCAGGTTGCCGATACTCGGATATAAAATAGGAGAGATGGCTTTCCTTACCGATATGAAGGATATAGCAGCAGAAGAAATCGAGTGCCTGAAAAGCTGTCGACTTCTTTTTATCAACGGGCTTCGCTACCGAAAGGAACATCCTTCGCACCAGACCATAGAGCAGGCTATTGACACAATAGGACAAATCGGTAATCCGGAAAGTGTCCTGATTCACCTCTCCCACCATGCACCCCTGCATCAGGAACATTTGGAAATTCTTCCTCCACATATCCATTCGGGATATGATGGCCTGGAAGCTATAATCGACGAAAAGGGGATAAGAATAAAAGACTTCGAACCGCATGTTTCCCGTTCGGAATACCATTATCAGGACTGCGGACGCATCGGTTACGAATCGGCACTGACCCTGCAACGCAAGCTCTTCCATGATGCTGTAGCAGACAAATTGGAAAACAGGAAACCGCAAAATACGCTGCTCTTCTGTGAGCATGAACCGGTTCTAACCTTGGGCAAACACGGTCATGAAGAAAATCTGTTGCTGTCCGAGTCCGAGCTGAAAAGTCGCGACATCCGACTATTTCATATAGAACGAGGAGGGGATATCACCTACCACGGGCCGGGACAAATTACGGGATACCCCATATTCGATCTCGAACAATACGGTATCGGCTTACGCAGCTATATCGAAATGCTTGAGCAGTGTATCATCGATCTCATTGCCATATTCGGTCTGAAAGGCGAACGTTCGGCCGGAGCATCCGGCGTATGGCTGGATCCCGATATACCGGGGCGTACTCGCAAAATCTGCGCGATAGGGGTGAAAAGCAGTCGGCACATAACGATGCATGGCTTTGCCCTCAATGTCAATACGGATCTCGATTACTTCAAACTGATCAACCCCTGTGGATTCTCGGATAGAGGGGTGACTTCTATCAGTCGTGAACTTGGACGCGAGCAGGATTTTATCCTCGTCAAGCAACAACTCGAAGCTGTTTTCCGACGCAATTTCGGCGCTTTA","6.60","-6.12","55784","MRCILLGSGTSTGVPEVGCHCRVCRSEDRHDKRTRTSLLIITDAGKRILIDCSPDFRQQALFAGIDSLDAVLLTHEHFDHVGGLDDLRTICWHRELAVYAEQNVLDSIRDRLHYVFRKNPYPGTPLLKLCEVKPDMPFQVADLTVEPLRIMHGRLPILGYKIGEMAFLTDMKDIAAEEIECLKSCRLLFINGLRYRKEHPSHQTIEQAIDTIGQIGNPESVLIHLSHHAPLHQEHLEILPPHIHSGYDGLEAIIDEKGIRIKDFEPHVSRSEYHYQDCGRIGYESALTLQRKLFHDAVADKLENRKPQNTLLFCEHEPVLTLGKHGHEENLLLSESELKSRDIRLFHIERGGDITYHGPGQITGYPIFDLEQYGIGLRSYIEMLEQCIIDLIAIFGLKGERSAGASGVWLDPDIPGRTRKICAIGVKSSRHITMHGFALNVNTDLDYFKLINPCGFSDRGVTSISRELGREQDFILVKQQLEAVFRRNFGAL","1423771 1425246","The gapped BLAST hit to phnP protein and the hit to COG1235 correspond to residues 6-254 of PG1179. The gapped BLAST hits to lipoate-protein ligase B and the hit to COG0321 correspond to residues 270-480 of PG1179. This suggests a multidomain, multifunctional protein.TIGR ID: PG1343","lipoate-protein ligase B; phnP-like protein","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 6-254 are 36% similar to gb|AAC66903.1| phnP protein of Borrelia burgdorferi, residues 279-485 are 41% similar to gb|AAD34635.1|AF153678_4 lipoate-protein ligase B of Myxococcus xanthus, residues 279-467 are 42% similar to gb|AAB80636.1| Contains similarity to Mycobacterium LIPB gene of Arabidopsis thaliana, residues 279-470 are 41% similar to emb|CAB11384.1| lipoate-protein ligase of Mycobacterium leprae.","
InterPro
IPR000544
Domain
Lipoate-protein ligase B
PD006086\"[303-378]TLipoate_B
TIGR00214\"[297-490]TlipB
PS01313\"[350-365]TLIPB
InterPro
IPR001279
Domain
Beta-lactamase-like
PF00753\"[34-156]TLactamase_B
InterPro
IPR004143
Domain
Biotin/lipoate A/B protein ligase
PF03099\"[322-411]TBPL_LipA_LipB
noIPR
unintegrated
unintegrated
G3DSA:3.60.15.10\"[1-262]TG3DSA:3.60.15.10
PTHR10993\"[287-489]TPTHR10993
SSF56281\"[1-244]TSSF56281


","BeTs to 5 clades of COG1235COG name: Metal-dependent hydrolases of the beta-lactamase superfamily IFunctional Class: RThe phylogenetic pattern of COG1235 is amtK-q-CeB------o-INxNumber of proteins in this genome belonging to this COG is 2BeTs to 5 clades of COG0321COG name: Lipoate-protein ligase BFunctional Class: HThe phylogenetic pattern of COG0321 is ----y--ce-rh--------x","***** IPB000544 (Lipoate-protein ligase B) with a combined E-value of 8.2e-36. IPB000544A 311-325 IPB000544B 345-368 IPB000544C 421-456","Residues 6-254 are 36% similar to a (PROTEIN HYDROLASE CONSERVED INTERGENIC REGION PHNP LONG) protein domain (PD003027) which is seen in O51483_BORBU.Residues 1-110 are 32% similar to a (PQQ COENZYME SYNTHESIS PROTEIN) protein domain (PD014053) which is seen in Q49149_METEX.Residues 304-407 are 36% similar to a (PROTEIN B LIPOATE-PROTEIN LIGASE) protein domain (PD006086) which is seen in LIPB_SYNY3.Residues 409-470 are 59% similar to a (PROTEIN B LIPOATE-PROTEIN LIGASE) protein domain (PD006665) which is seen in LIPB_MYCLE.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Thu Apr 5 18:23:59 MDT 2001","Thu Apr 5 18:23:59 MDT 2001","Wed Feb 28 13:12:57 MST 2001","Thu Apr 5 18:23:59 MDT 2001","Wed Feb 28 13:12:57 MST 2001","Wed Feb 28 13:12:57 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Feb 28 13:12:57 MST 2001","-53% similar to PDB:1W66 STRUCTURE OF A LIPOATE-PROTEIN LIGASE B FROM MYCOBACTERIUM TUBERCULOSIS (E_value = 1.2E_29);","","","Residues 34 to 227 (E-value = 1.4e-11) place PG1179 in the Lactamase_B family which is described as Metallo-beta-lactamase superfamily (PF00753)Residues 322 to 447 (E-value = 1.5e-20) place PG1179 in the BPL_LipA_LipB family which is described as Biotin/lipoate A/B protein ligase family (PF03099)","Thu Apr 5 18:06:23 MDT 2001","34541031","","","","","","1","","24","PG1343" "PG1180","1425733","1426851","1119","ATGAATCCGCCCAAAAGACTGCTTGTCATTCACCGCGCCCTTGCTCCTTACCGTATCGAACTGCTCAATACTCTGTCGGCAGCTTTCGATACACATATCTACTTCGAATTTGCATCACCTATAGAACAGCGATTCGATGCAGGCGAACTAGCCAAGCGTGTTCACTTTCAAAGCAGTGTACTTCCTCCCGCCCCAAAAATCCCGGGATTGAAAAACTTTCGTCCCTATGCCGCCTCATTGGTTCGCAGTCTTCGTCCCGATGTCGTTCTCTGTAGCGAATTCAATCTGCTGACACTGACCCTCACTGCTGCCTCTCGCCTGTTCAGTCCGAAAACCAAGCTGTATGTCTTATGCGATGACAATGAACAAATGGCAGAAGCAGAGCTGCACTACGGTCGTGGCCTCAAACATCGGATGCTCTCCTATGTGGAAGGCGTTATTCTATGTGATAGCCGTGCCTGTGATCTCTATGCCTCTCGCTTCGCTACGCTGGATAGGGAGCGATTCGTTTACCTCCCCATCGTACAGGACGAAAAGGTGCTGCGCCCCCTCTATGAACAGGTCTTCGGTATAGGCCGGGACCTGCGACATGCTCTCATTCCTGCTGGTGCTCGGATGATACTGTATGTAGGACGCTTGTCAGAGGAAAAAAACCTGCCGGCACTGATCGATAACCTTTCCACTCTACCCGATGATGTTCATCTCGTTATTGTCGGCGACGGCCCGATGCAGTCAGCCCTAATGAATCAAGTGCAAGCTACAGGCCATCCGGAACGAATCATATTTGCAGGGAAAAAGGAAGGAGCAGAGCTTTATGCCTACTATACGCAGGCCGATTGCCTCGTATTACCGAGCATGCGCGAATGTTTCGGTTCGGTCGTAAACGAAGCTCTCATAGCAGGCGTTCCTGTGGTTTGCAGCGATATTGCCGGGGCATCTTGCCTGGTTACAGAAAGCAACGGACGTACTTTCTCCCCCATGCTGCCGAATGCTCTCTCTCAAGCGTGTAATGATCTGCTTGGAAGCATCGCACCTTTCTGCGGCGACAGCCTTCGACCTTCTCTCATGCCATTTACTTTCGAACGAGCCATAGCCCCTGTGCTATCCCTGCTTAGCCGA","6.90","-0.53","41231","MNPPKRLLVIHRALAPYRIELLNTLSAAFDTHIYFEFASPIEQRFDAGELAKRVHFQSSVLPPAPKIPGLKNFRPYAASLVRSLRPDVVLCSEFNLLTLTLTAASRLFSPKTKLYVLCDDNEQMAEAELHYGRGLKHRMLSYVEGVILCDSRACDLYASRFATLDRERFVYLPIVQDEKVLRPLYEQVFGIGRDLRHALIPAGARMILYVGRLSEEKNLPALIDNLSTLPDDVHLVIVGDGPMQSALMNQVQATGHPERIIFAGKKEGAELYAYYTQADCLVLPSMRECFGSVVNEALIAGVPVVCSDIAGASCLVTESNGRTFSPMLPNALSQACNDLLGSIAPFCGDSLRPSLMPFTFERAIAPVLSLLSR","1425733 1426851","TIGR ID: PG1345","conserved hypothetical protein","Cytoplasm","Several significant hits and numerous weak hits in gapped BLAST; e.g. residues 199-316 are 38% similar to dbj|BAB06407.1| alpha-D-mannose-alpha(1-6)phosphatidyl myo-inositol monomannoside transferase of Bacillus halodurans, residues 201-305 are 41% similar to gb|AAF10795.1|AE001970_10 mannosyltransferase, putative of Deinococcus radiodurans, residues 200-335 are 36% similar to pir||E69727 biosynthesis of teichuronic acid of Bacillus subtilis.","
InterPro
IPR001296
Domain
Glycosyl transferase, group 1
PF00534\"[191-313]TGlycos_transf_1
noIPR
unintegrated
unintegrated
PTHR12526\"[138-340]TPTHR12526
SSF53756\"[1-373]TSSF53756


","BeTs to 14 clades of COG0438COG name: Glycosyltransferases IFunctional Class: MThe phylogenetic pattern of COG0438 is AMTKYQVCEBRhUj--o---XNumber of proteins in this genome belonging to this COG is 9","***** PF00534 (Glycosyl transferases group 1) with a combined E-value of 9.6e-08. PF00534B 281-316","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Feb 28 13:31:50 MST 2001","Wed Feb 28 13:26:03 MST 2001","Wed Feb 28 13:26:03 MST 2001","Wed Feb 28 13:26:03 MST 2001","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 205-313 are 26% similar to PG1469, a predicted probable hexosyltransferase. Similarites are also seen to PG0114, PG1023.","Wed Feb 28 13:31:50 MST 2001","Wed Feb 28 13:26:03 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 191 to 362 (E-value = 8.4e-20) place PG1180 in the Glycos_transf_1 family which is described as Glycosyl transferases group 1 (PF00534)","Wed Feb 28 13:26:03 MST 2001","34541032","","","","","","1","","24","PG1345" "PG1181","1426851","1428119","1269","ATGAAAATTCTCCTGCTGAATACATCCGATGCAAGAGGCGGAGCAGCTGTAGCTGCTATGCGCTTGATGGAAACCTTACAAGAGGCCGGAGCCGAAGTCAGGATGTTGGTATTGAACCGCAATACGACAAACCCCGACATAATGGCTTTACATAGCGGACGATGCGGCAAAACAGCCGATAAATACCGTTTTTTAGCTGAACGGCTTCATATTTACATGTGCAATGGTCGGGATAGAAGCCGGCTCTTTCATGTCAGTACGGCTCTTATCGGCTATGATGTCAGCTGTCACCCGTGGGTACGCTGGGCAGATGTCATCCATCTGCACTGGATCAATCAGGGATTCCTTTCACTGAGAGGGCTGGAGCGTCTGACCCGATGCGGTAAATCCGTAGTATGGACGATGCACGATATGTGGCCTGTAACAGCGATTTGCCACCATGCCCGAGAGTGCCTGCGATACCGAACCGAATGCGGTGCTTGTCCGCAAATTTCCTCCCAAAAGGAGAAGGATTTGGCTCGTCTTGTATGGAATAGAAAATCCCGAGTAATATCCCTACTCCGGCCTACGCTTATCGGTTGTAGCCATTGGTTGGCCGATTTGGCACGGCAAAGCGCACTGACGGATGGACTGCGAATCGAATCGATACCGAATCCCATCGACACGAATCTCTTTGCCCCGGGTTCACGTTCGGACGCTCGCCGAATAATGGATTTGCCGACAGACAGAATATTGCTTCTCTTCGGAGCTGTACAGGCGGATGATCCTCGCAAGGGCATATACGAACTGTCGCAAGCAATGAAAAGACTTCGAGAGAGACAGCCGGATTTAAGCAAACGAATCGCTCTTGTCGTATTCGGCTCTCTCCGCGATGAGGTGAGAAGTCTTTTTCCCAATTATAAGCTTATTTCGATCGGTTATATCCGTGAACCAAGCCGAATGGCCGAACTGTACCGTGCTGCCGATCTCTTTGTAATTCCCTCTTTAGAGGAGAACCTCCCTAATACTATTATGGAGGCTCTCTCTGTCGGTACGCCCTGTGTGGCTTTCCGTGTCGGGGGTATACCGGAGATGATCGTATCGGGTAGTACCGGATATTTAGCCGCTTTTCGTGATCCGTCCGATTTGGCAGAAGGGATAACCAAGACCATTGCTCTACAAGAAACCTCCCCCGAAGCTGTTGCTTCAGCTTGTCGCTCCTTTGTTCTCAGGCACTACTCGCGTGAAGTAGTATCCTCTCGTATGCTGCAGCTCTACCGCGAACTGCTC","9.40","14.15","47696","MKILLLNTSDARGGAAVAAMRLMETLQEAGAEVRMLVLNRNTTNPDIMALHSGRCGKTADKYRFLAERLHIYMCNGRDRSRLFHVSTALIGYDVSCHPWVRWADVIHLHWINQGFLSLRGLERLTRCGKSVVWTMHDMWPVTAICHHARECLRYRTECGACPQISSQKEKDLARLVWNRKSRVISLLRPTLIGCSHWLADLARQSALTDGLRIESIPNPIDTNLFAPGSRSDARRIMDLPTDRILLLFGAVQADDPRKGIYELSQAMKRLRERQPDLSKRIALVVFGSLRDEVRSLFPNYKLISIGYIREPSRMAELYRAADLFVIPSLEENLPNTIMEALSVGTPCVAFRVGGIPEMIVSGSTGYLAAFRDPSDLAEGITKTIALQETSPEAVASACRSFVLRHYSREVVSSRMLQLYRELL","1426851 1428119","TIGR ID: PG1346","conserved hypothetical protein (possible glycosyltransferase)","Cytoplasm","Two moderately significant hits and numerous weak hits in gapped BLAST; e.g. residues 1-423 are 22% similar to pir||B71690 hypothetical protein of Rickettsia prowazekii, residues 104-423 are 29% similar to gb|AAD40721.1|AF048749_17 putative glycosyl transferase of Bacteroides fragilis, residues 204-422 are 27% similar to dbj|BAB07431.1| unknown conserved protein of Bacillus halodurans.","
InterPro
IPR001296
Domain
Glycosyl transferase, group 1
PF00534\"[230-401]TGlycos_transf_1
noIPR
unintegrated
unintegrated
PD214231\"[105-422]TPD214231
PTHR12526\"[2-423]TPTHR12526
PTHR12526:SF36\"[2-423]TPTHR12526:SF36
SSF53756\"[1-423]TSSF53756


","BeTs to 13 clades of COG0438COG name: Glycosyltransferases IFunctional Class: MThe phylogenetic pattern of COG0438 is AMTKYQVCEBRhUj--o---XNumber of proteins in this genome belonging to this COG is 9","***** PF00534 (Glycosyl transferases group 1) with a combined E-value of 3e-11. PF00534B 324-359","Residues 105-180 are 37% similar to a (PROTEIN PUTATIVE COLANIC ACID) protein domain (PD191394) which is seen in Q9ZDJ2_RICPR.Residues 316-380 are 39% similar to a (TRANSFERASE PROTEIN GLYCOSYLTRANSFERASE SYNTHASE) protein domain (PD000172) which is seen in P73402_SYNY3.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Jun 12 12:42:51 MDT 2001","Tue Jun 12 12:42:51 MDT 2001","Wed Feb 28 13:48:50 MST 2001","Wed Feb 28 13:48:50 MST 2001","Wed Feb 28 13:48:50 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Feb 28 13:48:50 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 230 to 401 (E-value = 2.7e-25) place PG1181 in the Glycos_transf_1 family which is described as Glycosyl transferases group 1 (PF00534)","Wed May 2 12:06:06 MDT 2001","34541033","","","Comstock,L.E., Coyne,M.J., Tzianabos,A.O., Pantosti,A., Onderdonk,A.B. and Kasper,D.L. 1999. Analysis of a capsular polysaccharide biosynthesis locus of Bacteroides fragilis. Infect. Immun. 67 (7): 3525-3532. PubMed: 10377135.","","Wed Feb 28 13:48:50 MST 2001","1","","24","PG1346" "PG1182","1428259","1428720","462","ATGACCGGCATAAGAGAAGGAGAAAAGGAACTGTCGCTCCTTGGTTCCAAAACAGAATACCGCAACGACTATGCCCCCGAAGTCTTGGAGGCATTCACCAACAAACATCAGGAGAATGACTATTGGGTAAGGTTCAACTGTCCCGAGTTTACAAGCCTATGCCCTATCACAGGGCAACCGGACTTTGCCACTATCTACATCAACTATATTCCGGACGTTAAGATGGTAGAGAGCAAGAGCCTCAAACTCTACTTGTTCAGTTTCCGCAATCATGGTGCTTTTCATGAGGACTGTGTCAATATCATCATGAAGGATCTCATCGCCCTGATGCAACCTCGCTATATCGAGGTGTGGGGCGACTTCACACCTCGCGGCGGTATCAGCATCGTACCTTTCTGCAACTACGGAAAGCCGGGAAGCCGATACGAGCTTCTGGCAGAAAAGAGAATGGAAACACACCAT","6.00","-2.99","17909","MTGIREGEKELSLLGSKTEYRNDYAPEVLEAFTNKHQENDYWVRFNCPEFTSLCPITGQPDFATIYINYIPDVKMVESKSLKLYLFSFRNHGAFHEDCVNIIMKDLIALMQPRYIEVWGDFTPRGGISIVPFCNYGKPGSRYELLAEKRMETHH","1428259 1428720","TIGR ID: PG1347","conserved hypothetical protein","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 1-153 are 71% similar to dbj|BAB05960.1| unknown conserved protein of Bacillus halodurans, residues 1-153 are 72% similar to pir||D69868 conserved hypothetical protein of Bacillus subtilis, residues 11-153 are 75% similar to gb|AAF40762.1| conserved hypothetical protein of Neisseria meningitidis MC58.","
InterPro
IPR001474
Family
GTP cyclohydrolase I
PF01227\"[41-140]TGTP_cyclohydroI
noIPR
unintegrated
unintegrated
SSF55620\"[27-154]TSSF55620


","BeTs to 7 clades of COG0780COG name: Uncharacterized BCR, YkvM familyFunctional Class: SThe phylogenetic pattern of COG0780 is -----qvceb-Huj------xNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 23-136 are 81% similar to a (PROTEIN CONSERVED PUTATIVE YKVM) protein domain (PD010789) which is seen in O31678_BACSU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Feb 28 14:00:26 MST 2001","Wed Feb 28 14:00:26 MST 2001","Wed Feb 28 14:00:26 MST 2001","","Wed Feb 28 14:00:26 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Feb 28 14:00:26 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 41 to 140 (E-value = 5.2e-57) place PG1182 in the GTP_cyclohydroI family which is described as GTP cyclohydrolase I (PF01227)","Wed Feb 28 14:00:26 MST 2001","34541034","","","","","","1","","24","PG1347" "PG1183","1428751","1429629","879","ATGAAGATTCTAGCCATTATCAATCCCATATCGGGCATCGGATCGAAAAGCAACATACCGAGCCTTATAGCCGATGTATTCGCCCATGATCCTCACGAACTCTTTATCACCTATTCGCAACGTGCTGGCCATGCACGTGAATTGGCAGCACAAGCAGTGGAGAAGCATTACGACTGCGTCATTGCAGTAGGAGGCGATGGAACGGTGAACGAGATAGCCCAAAGCCTTCGCTACACCGATGTAGTGCTGGGTATCGTCCCGAAAGGATCAGGCAACGGGTTGGCACGTGCCCTCAAGCTGCCACTCACCGTCGGGAAAGCTCTCGAAGTGATCAGAGCCGGACATGTTCGCACCATCGACTGCTGTGAAGCGGATAGTCGCCCTTTCTTTTGCACCTGCGGATTGGGATTCGATGCCGAGGTTAGCAAGAAATTCGCCCAAGCGGGTAGTCGAGGCCCTATCACTTATGCGCGAACCATGATCGAGAGTTACCTCCAAAACGAACCGAAAGAATACAAACTGACGATAGACGGCAAATCCTTTGAGGAGAAAGCTTTCCTCGTCACTTGTGCCAATGCGCCCCAGTATGGCAATAACGCCTATATCGCTCCATTAGCGGATTTGGAGGATGGTAAAATGGATGTAGTTATTATCCGTCCTTTCAATCCATTGGAAGCTCCACAATTGGCTTTACAACTCTTTACCAAGCGTATCAACAGCAACTCCAATCTGGACACCTATAAGGCCGAAAACCTGATCATTGAGCGTGAGACAGAGGGCGTAATGCACCTCGATGGCGATCCTGTCATGTTCGGTAAGCGCATTGAGATCCGCACCTACGGCCGGTCACTCAAGGTATTTGCTACTGAAACCTACACT","6.50","-1.83","32089","MKILAIINPISGIGSKSNIPSLIADVFAHDPHELFITYSQRAGHARELAAQAVEKHYDCVIAVGGDGTVNEIAQSLRYTDVVLGIVPKGSGNGLARALKLPLTVGKALEVIRAGHVRTIDCCEADSRPFFCTCGLGFDAEVSKKFAQAGSRGPITYARTMIESYLQNEPKEYKLTIDGKSFEEKAFLVTCANAPQYGNNAYIAPLADLEDGKMDVVIIRPFNPLEAPQLALQLFTKRINSNSNLDTYKAENLIIERETEGVMHLDGDPVMFGKRIEIRTYGRSLKVFATETYT","1428751 1429629","TIGR ID: PG1348","conserved hypothetical protein","Cytoplasm, Periplasm","Numerous significant hits in gapped BLAST to hypothetical proteins; e.g. residues 36-270 are 28% similar to dbj|BAB05672.1| unknown conserved protein of Bacillus halodurans, residues 1-267 are 24% similar to gb|AAD35445.1|AE001716_8 conserved hypothetical protein of Thermotoga maritima, residues 23-267 are 26% similar to emb|CAB14331.1| multidrug resistance protein of Bacillus subtilis.","
InterPro
IPR001206
Domain
Diacylglycerol kinase, catalytic region
PD005043\"[2-98]TDAGKc
PF00781\"[2-127]TDAGK_cat
SM00046\"[2-127]TDAGKc
InterPro
IPR005218
Family
Conserved hypothetical protein 147
TIGR00147\"[1-290]TCHP147
noIPR
unintegrated
unintegrated
PTHR12358\"[1-258]TPTHR12358
PTHR12358:SF4\"[1-258]TPTHR12358:SF4
SSF111331\"[18-85]TSSF111331


","BeTs to 6 clades of COG1597COG name: Uncharacterized proteins, BmrU familyFunctional Class: SThe phylogenetic pattern of COG1597 is ----Y-vceBR----------Number of proteins in this genome belonging to this COG is 1","***** PF00609 (Diacylglycerol kinase accessory domain (presumed)) with a combined E-value of 4.3e-07. PF00609D 59-73 PF00609E 81-104 PF00609F 130-166","Residues 23-267 are 26% similar to a (PROTEIN ORF8 CHROMOSOME BMRU) protein domain (PD005043) which is seen in BMRU_BACSU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Fri Apr 6 17:20:12 MDT 2001","Fri Apr 6 17:20:12 MDT 2001","Wed Feb 28 14:22:02 MST 2001","Wed Feb 28 14:22:02 MST 2001","Wed Feb 28 14:22:02 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Feb 28 14:22:02 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 2 to 127 (E-value = 6.1e-07) place PG1183 in the DAGK_cat family which is described as Diacylglycerol kinase catalytic domain (presumed) (PF00781)","Fri Apr 6 17:20:12 MDT 2001","34541035","","","","","","1","","24","PG1348" "PG1184","1430663","1429887","777","ATGGAAGAGGTATCTCCCGACCACAGCACCATCAGTCGATTTCGTTCGGCACTGACAGAGTTGGGGCTCATGGACAAACTATTGGCGCAGTTTAACAAACAACTTTCCCGCCATCACATTTCGGTCAGGGAAGGGGTGCTTGTCGATGCAAGCCTTGTGGAGACGCCGCATAAACCCAACGGAAGCATTACGATTGAAGTCGCAGACGACAGAGAAGACAATCGGAGCGAGGAGGAAAAAGAGGCAGAGGAGGATTATCAAAAACAGGTTGTCCGTCAGCGTAAAGGGACGGATGAAGAAGCCCGTTGGGTTTACAAACAAAAGCGTTATCACTACGGATACAAAAAGCATTGTCTGACCAATGTTCAAGGCATTGTTCAAAAGGTGATAACGACTGCAGCGAACCGCAGTGACACGAAGGAGTTTATTGCGCTATTGCAGGGTGCAAACATACCTCAAGGCTCAGCCGTCTTGGCGGACAAAGGATATGCTTGCGGGGAAAATCGTTCCTACCTGCAAACCCATCACCTTCAAGACGGCATCATGCACAAGGCACAACGCAACAGGGCATTGACCGAGGAAGAGAAGCAACGAAACAAAGCAATCAGTCGGATACGGAGCACCATCGAACGCACCTTTGGCAGTATTCGCCGGTGGTTTCATGGCGGACGATGTCGATACCGGGGACTTGCCAAGACCCATACTCAAAACATTCTTGAAAGCATCGCCTTTAATTTATACAGAACCCCGGGGATAATTATGTCCTCATTTGTAGGA","10.10","10.52","29697","MEEVSPDHSTISRFRSALTELGLMDKLLAQFNKQLSRHHISVREGVLVDASLVETPHKPNGSITIEVADDREDNRSEEEKEAEEDYQKQVVRQRKGTDEEARWVYKQKRYHYGYKKHCLTNVQGIVQKVITTAANRSDTKEFIALLQGANIPQGSAVLADKGYACGENRSYLQTHHLQDGIMHKAQRNRALTEEEKQRNKAISRIRSTIERTFGSIRRWFHGGRCRYRGLAKTHTQNILESIAFNLYRTPGIIMSSFVG","1430663 1429887","Member of the IS5 family of elements. Reproduces the middle and C-terminal domains of full-length ISPg1 elements (e.g. PG1662).TIGR ID: PG1349","ISPG1 transposase fragment (IS1106-related transposase)","Cytoplasm","PG1184 is equivalent to the middle and C-terminal regions of the previously sequenced AJ130872 in GenBANK. See also AB015879. Residues 6-248 are 35% similar to the IS1106 transposase from N.meningitidis (AE002488).","
InterPro
IPR002559
Domain
Transposase, IS4-like
PF01609\"[45-246]TTransposase_11


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 201-259 are identical to a (TRANSPOSASE ORF7 INSERTION SEQUENCE IS1126-LIKE GENE) protein domain (PD187845) which is seen in Q9ZA61_PORGI.Residues 55-200 are 87% similar to a (TRANSPOSASE PLASMID PROTEIN ELEMENT) protein domain (PD004652) which is seen in Q9ZA61_PORGI.Residues 8-54 are identical to a (TRANSPOSASE ORF7 INSERTION SEQUENCE) protein domain (PD187846) which is seen in Q9ZA61_PORGI.","","","","","","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","","","","Mon Jun 25 10:33:00 MDT 2001","Fri Feb 16 12:11:24 MST 2001","Mon Jun 25 10:33:00 MDT 2001","Wed Jan 3 11:58:54 2001","","Mon Jun 25 10:33:00 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1184 is virtually identical to PG1087, PG0763, PG1755, PG0686, PG0756, PG1798, PG1230, PG1919, PG0044, PG0689, PG1215, PG1665, PG0839, PG1895, all ISPg1 fragments that reproduce the middle and C-terminal residues of PG1267, PG0169, PG1050, PG1062, PG0740, PG0918, PG1662, PG1422, PG0420, PG0499, PG1099.Also, partial similarities to PG0732, PG0842, PG0883, PG1231, PG0730, PG1159, PG1608.","Fri Feb 16 12:11:24 MST 2001","Thu Jun 14 11:35:52 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 45 to 246 (E-value = 2.2e-40) place PG1184 in the Transposase_11 family which is described as Transposase DDE domain (PF01609)","Mon Jun 25 10:33:00 MDT 2001","","","Hanley,S.A., Aduse-Opoku,J. and Curtis,M.A.A 55-kilodalton immunodominant antigen of Porphyromonas gingivalisW50 has arisen via horizontal gene transferInfect. Immun. 67 (3), 1157-1171 (1999)Maley,J. and Roberts,I.S.Characterisation of IS1126 from Porphyromonas gingivalis W83: a new member of the IS4 family of insertion sequence elementsMicrobiol. Lett. 123 (1-2), 219-224 (1994)Shibata,Y., Hayakawa,M., Takiguchi,H., Shiroza,T. and Abiko,Y.Determination and characterization of the hemagglutinin-associatedshort motifs found in Porphyromonas gingivalis multiple geneproducts. J. Biol. Chem. 274 (8), 5012-5020 (1999)","Knight,A.I., Ni,H., Cartwright,K.A. and McFadden,J.J.Identification and characterization of a novel insertion sequence, IS1106, downstream of the porA gene in B15 Neisseria meningitidis.Mol. Microbiol. 6 (11), 1565-1573 (1992)","Wed Feb 14 09:23:30 MST 2001","Wed Feb 14 09:23:30 MST 2001","1","","24","PG1349" "PG1185","1431009","1432136","1128","ATGTATCATTCTCTATTTGAAAGCCTCTGCATGGTTCCGGACCCACGGATAGAGCGTAAAAAAATTTATCCTCTTGATTTTTTACTGCTGATCGTTTTCCTCTCTACACTCTCAGGCAATACCTCTTGGTATGAGATTGAAGATTATGCCGAGGAATACGAAGAAGAATTGAAAAGTCTATACGAAATGCTTACCGGCCATCAGCTTATGCATACCATGCCTTCTCATGATACTCTCAACAGGAGCATCAGTCTGTTGGATGTAGAAGCTTTTGAGGGGGCTTATAAGCGATGGATTGAAGGCTTTATCTCGGCCACTTCGGGTAAACATATTTGCATTGATGGCAAGACGATGCGGGGAGTGAAGAAACTCTCTTTCGATACACAATCCCATGTCGTCTCTGCCTTTTCACCACAAGATATGTGCAGTCTTGCCCAACTCTACATCGACCGAAAAACAAACGAAATACCGGCTATACATCAACTTCTTGATTTGCTTGACTTGAACGGGGCTGTTGTCTCCATTGATGCCATAGGTACACAAACTGCCATTGCCGAACAAATTATCGATAAGGGCGGAAACTATGTATTGTGTGTTAAAGCGAATCAAAGTTTGAGTCTGCAAGAGATTGAAGCCTATTTCTGCCCTCTTTTTCAGAAACATATCCTCCTTGACGAACAGACGGAACTATCTCACGGACGCATAGAAACACGTCGCTATGAAAGTATTCTCAATCCCTTGGAGATAGAAGCCAACGAGGTATTAACTCGCTGGAAAGGCTTGAGGTCGATACACAAAGTTGTACGCAAACGAAGGGATAAAAAGAGTGACAAAACGAGTGAAGAAGTGGCCTACTACATTTCGTCATTAACAGATGTTTCTTCATTGAAACAAGCTATTCGTGGGCATTGGGCGATAGAGAATAAGTTACACCACTGTTTGGATGTCTATTTCGGACACGATGCCTCGCACAAGAGAACGAGGAATGTGGCGCAGATTATGGATATCATTCAAAAGATTAATTTACTCATTATAGAGAGACTAAAAACGAATATGAAGTCCTCAATCCCTCGCATCCAAAAGAAACTGGCTCGAATGAAGCCACAACAACTAATCACAATACAATTT","7.40","2.35","43313","MYHSLFESLCMVPDPRIERKKIYPLDFLLLIVFLSTLSGNTSWYEIEDYAEEYEEELKSLYEMLTGHQLMHTMPSHDTLNRSISLLDVEAFEGAYKRWIEGFISATSGKHICIDGKTMRGVKKLSFDTQSHVVSAFSPQDMCSLAQLYIDRKTNEIPAIHQLLDLLDLNGAVVSIDAIGTQTAIAEQIIDKGGNYVLCVKANQSLSLQEIEAYFCPLFQKHILLDEQTELSHGRIETRRYESILNPLEIEANEVLTRWKGLRSIHKVVRKRRDKKSDKTSEEVAYYISSLTDVSSLKQAIRGHWAIENKLHHCLDVYFGHDASHKRTRNVAQIMDIIQKINLLIIERLKTNMKSSIPRIQKKLARMKPQQLITIQF","1431009 1432136","Member of IS5 family of elements.TIGR ID: PG1350","ISPg2 (PGIS2) transposase","Cytoplasm","This sequence corresponds to gi:34398065 in Genbank.Its nearest neighbor in the NR database is gi:56478910 from Azoarcus sp. EbN1.","
InterPro
IPR002559
Domain
Transposase, IS4-like
PF01609\"[110-344]TTransposase_11


","No hit to the COGs database.","***** PF01811 (Transposase) with a combined E-value of 2e-24. PF01811A 0-35 PF01811B 36-52 PF01811E 134-181 PF01811F 183-207","Residues 132-264 are identical to a (PROTEIN TRANSPOSASE REGION PUTATIVE) protein domain (PD004339) which is seen in P95492_PORGI.Residues 332-376 are identical to a (PUTATIVE TRANSPOSASE) protein domain (PD054580) which is seen in P95492_PORGI.Residues 279-331 are identical to a (PROTEIN TRANSPOSASE PUTATIVE REGION) protein domain (PD004012) which is seen in P95492_PORGI.Residues 1-131 are 83% similar to a (PUTATIVE TRANSPOSASE) protein domain (PD103322) which is seen in P95492_PORGI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Mon Mar 7 13:55:32 2005","Thu Feb 8 12:07:36 MST 2001","Mon Mar 7 13:55:32 2005","Thu Feb 8 12:07:36 MST 2001","Mon Mar 7 13:55:32 2005","Mon Mar 7 13:55:32 2005","yes","Fri Feb 20 15:41:32 MST 1998","PG1185 is identical to PG1522, PG1905, PG0775 and PG0249, all predicted ISPg2 elements. PG1185 is similar to PG0943 and weakly similar to PG1058, PG0889, PG1795 and PG1855.","Thu Feb 8 12:12:32 MST 2001","Mon Mar 7 13:55:32 2005","No significant hits to the PDB database (E-value < E-10).","","","Residues 110 to 344 (E-value = 5.8e-39) place PG1185 in the Transposase_11 family which is described as Transposase DDE domain (PF01609)","","34541036","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Mon Mar 7 13:55:32 2005","","1","","24","PG1350" "PG1186","1432837","1432334","504","ATGCATGAGCCGGTTGTTATGAGCAGAAACGTCGTTCCGAAAATGCTCTCTCTGATATTTATCGGAGGGAGCATCTTTGCTTCGTGCCGGAAACAGATTGCCGTGCAGAGCATACCGAATATGCCTGTGAACTATACCATCTATGACAATAGTGCACAGGCGATCAAATTGGCCAAGGAGGGGATGATCTCTATTACGAACGTGGAAGTAGAGAATACGGCTATAGGCTATGGGGGGCTCTTGGTGGTATCGAAGACGATTACACCTTCGGCCGAGGACCTTGCCTACGATCTCAGCTGTCCCTACGAAGTGAAACAGGATGTGAGGGTTCGACCCTCTACGGACAATCCCTTCACCGTTCGCTGTCCGGTCTGCAGCAGCGTATTCAACGTAGCGGAGAATGACGGTGCTCCTATCGCCGGCCCTGCCGCCTCATCCGATTCGCCTCGCAGAATGCGGCAGTATCGAGTGATCCGCCAGCCCGATGGTATTCGTATTATCAAC","8.20","2.04","18317","MHEPVVMSRNVVPKMLSLIFIGGSIFASCRKQIAVQSIPNMPVNYTIYDNSAQAIKLAKEGMISITNVEVENTAIGYGGLLVVSKTITPSAEDLAYDLSCPYEVKQDVRVRPSTDNPFTVRCPVCSSVFNVAENDGAPIAGPAASSDSPRRMRQYRVIRQPDGIRIIN","1432876 1432334 [Bad Olap 1524 44 0]","TIGR ID: PG1351","hypothetical protein","Periplasm","This sequence corresponds to gi:34397352 in Genbank.","
noIPR
unintegrated
unintegrated
signalp\"[1-27]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 11:36:05 MDT 2001","","Thu Jun 14 11:36:05 MDT 2001","Thu Jun 14 11:36:05 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:36:05 MDT 2001","Thu Jun 14 11:36:05 MDT 2001","","","","Mon Mar 7 13:57:38 2005","Wed Feb 28 14:24:19 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Feb 28 14:24:19 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Jun 14 11:36:05 MDT 2001","34541037","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Mon Mar 7 13:57:38 2005","","1","","","PG1351" "PG1187","1433243","1432833","411","ATGACAGAATACACAAGTGAAATAAAAAGTATAGCAGCACCTCTCTCGGCTGTCTATTCCAAACTGTCGGACCTCTCCAATCTCAAGGGGATGGAGGATAAACTGCCCGAGGGAAAGATTAAGCTGACGGGGATAGACAGTGATAGCTGTACGCTATCAGTGAATCCGGTGGGGCAGATTACTTTGCGAATAGTAGAGCGTCGTCAGGACGACCTGATCAAATTCGAGGCAGAACGCTCTCCCATGCCTTTCAACGTGTGGATCCAGCTCAAAGAGGCTGCACCCGATGATACCAGACTGAAGATTACCCTGCGTGCCGAGCTGAATATGTTTGTGAAGCCTATGCTGGACAAGCCTCTGCACGAAGGTGTGGATCGGCTGGCGCAGCTTTTGGCATCGTTGGACTATGCA","5.10","-2.81","15346","MTEYTSEIKSIAAPLSAVYSKLSDLSNLKGMEDKLPEGKIKLTGIDSDSCTLSVNPVGQITLRIVERRQDDLIKFEAERSPMPFNVWIQLKEAAPDDTRLKITLRAELNMFVKPMLDKPLHEGVDRLAQLLASLDYA","1433243 1432833 [Shorter 1522 44 97]","TIGR ID: PG1352","hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","","Wed Feb 28 14:25:47 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Jul 23 18:57:24 2008","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Feb 28 14:25:47 MST 2001","34541038","","","","","","1","","","PG1352" "PG1188","1433926","1433297","630","ATGAAAACACTTGGAAAACTCATCGCCTCGAAGCTCATCGAGGTGAAAGCCATCAAACTGCAGCCGAACAACCCCTTCACATGGGCTTCGGGTTGGAAAGCTCCTATCTATTGTGACAACAGAAAAACGTTGTCTTATCCCCAAATCCGCTCTCTTATCAAATTGGAATTGGCTCGCGTGATTTCCGAAACTTTCGGTGATGTCGAGGCTATTGCAGGCGTAGCTACAGGGGCTATAGCTCAAGGAGCATTGGTGGCTGATCTGCTCGGATTGCCTTTTGTGTATGTACGCTCGTCTCCCAAGGATCACGGATTGGAGAACCTTGTGGAGGGCGAACTCAAGCCGAACAGCAAGGTGGTAGTCATCGAGGACTTGATCTCTACGGGGGGTAGCAGCCTCAAGGCAGCAGAAGCCATACGCAATTTCGGTTGCGAAGTATTGGGTATGGTCGCAGTCTATACGCATGGATTCCCGATGGCCGAGCAGAATTTCGAGAAAGCAGAAGTCAAGCTTGTAACGCTTACCGACTACGATCAGGTGATAGAAGAAGCCTTGCGGACGGGCTATATTTCTGCCGAGAATGTGGAGCTGCTTCGCGAATGGCGCAAGAGTCCCGAGACGTGGGGTATC","5.50","-2.61","23005","MKTLGKLIASKLIEVKAIKLQPNNPFTWASGWKAPIYCDNRKTLSYPQIRSLIKLELARVISETFGDVEAIAGVATGAIAQGALVADLLGLPFVYVRSSPKDHGLENLVEGELKPNSKVVVIEDLISTGGSSLKAAEAIRNFGCEVLGMVAVYTHGFPMAEQNFEKAEVKLVTLTDYDQVIEEALRTGYISAENVELLREWRKSPETWGI","1433926 1433297","TIGR ID: PG1353","orotate phosphoribosyltransferase","Cytoplasm","Numerous significant hits to orotate phosphoribosyltransferase in gapped BLAST; e.g. residues 3-208 are 51% similar to gb|AAK05166.1|AE006339_9 orotate phosphoribosyltransferase of Lactococcus lactis subsp. lactis, residues 3-208 are 50% similar to gb|AAC95453.1| orotate phosphoribosyltransferase of Streptococcus pneumoniae, residues 4-207 are 49% similar to emb|CAB13430.1| orotate phosphoribosyltransferase of Bacillus subtilis.","
InterPro
IPR000836
Domain
Phosphoribosyltransferase
PF00156\"[39-170]TPribosyltran
InterPro
IPR002375
Family
Purine/pyrimidine phosphoribosyl transferase
PS00103\"[119-131]TPUR_PYR_PR_TRANSFER
InterPro
IPR004467
Domain
Orotate phosphoribosyl transferase
TIGR00336\"[10-180]TpyrE
InterPro
IPR006162
PTM
Phosphopantetheine attachment site
PS00012\"[127-142]FPHOSPHOPANTETHEINE
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.2020\"[12-205]TG3DSA:3.40.50.2020
SSF53271\"[1-206]TSSF53271


","BeTs to 11 clades of COG0461COG name: Orotate phosphoribosyltransferaseFunctional Class: FThe phylogenetic pattern of COG0461 is amtkYqvcebrhuj-----n-Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 111-177 are 55% similar to a (TRANSFERASE GLYCOSYLTRANSFERASE) protein domain (PD000249) which is seen in PYRE_BACSU.Residues 8-103 are 55% similar to a (TRANSFERASE GLYCOSYLTRANSFERASE OROTATE) protein domain (PD001420) which is seen in Q9ZHA6_STRPN.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Feb 28 15:01:59 MST 2001","Wed Feb 28 15:01:59 MST 2001","Wed Feb 28 15:01:59 MST 2001","","Wed Feb 28 15:01:59 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Feb 28 15:01:59 MST 2001","-69% similar to PDB:2AEE Crystal structure of Orotate phosphoribosyltransferase from Streptococcus pyogenes (E_value = 1.7E_54);","","","Residues 39 to 170 (E-value = 5.3e-27) place PG1188 in the Pribosyltran family which is described as Phosphoribosyl transferase domain (PF00156)","Tue May 8 14:15:34 MDT 2001","34541039","","","Quinn,C.L., Stephenson,B.T. and Switzer,R.L. 1991. Functional organization and nucleotide sequence of the Bacillus subtilis pyrimidine biosynthetic operon. J. Biol. Chem. 266 (14): 9113-9127. PubMed: 1709162.","","Wed Feb 28 15:01:59 MST 2001","1","","","PG1353" "PG1189","1434858","1434040","819","ATGATCAAACACGAGAGCTCTCAGCCATTGAGAGTTGCTGTAGCTCAATGCCGGATAGACTGGGAGGATAAGCACGCCAATCTACGCCGAATGGAGCGTTTGGCCGAAGAAACAGCCGGTATGGCGGATGTCCTCTTCTTTCCCGAAATGATGACTACGGGCTTTTCGATGAACGTACAAGCTCTGGCGGAGCCTTTCGAAGAGGGCGAAACTATCATGAGCCTGAAGAGAGTGACTGCTCGTCATGGTTTGGCTCTGTCGGCTACGATGGCCGTACGGGAGAACGGGAAATTCTATAATCGTGCCTATTTCGTGACACCGGAAGGAGAGGTCTTCCATCAGGACAAGAGGCACCTCTTCCGTGTAGGGGGAGAGCATGAGGTGATGACTCCGGCACAAGAACGCCGGATCTTCAACTATCGCGGTTGGAAGATCTTCATCATTCCCTGCTATGATCTGCGTTTTCCCGTCTGGTGTACCAATACGGATCTGGAATACGATCTGCTCGTCTGCATGGCCAACTGGCCTGAGCCGCGTCGCGCCGTCTGGCAAACGCTACTCCAAGCTCGTGCCATGGAGAACTATGCCTATGTGTGCGGCATCAATCGGGTGGGGGAGGACGGTATCGGTCTGCGCTATACGGGCGATTCGGCTATCCTTTCGCCTCGGGGCGAGTATCTTGCCACTTGTGCCGAAGGAGAGGAAAAGGTGCTGTACCATACGCTCGATAAGGGGGCGATGCAGCGTTTTCGCGACAAGTTCCCTGCGTGGATGGATATGGACTCTTTCGTCATCAACTATGATACCGATCTGCATCCA","5.90","-5.34","31628","MIKHESSQPLRVAVAQCRIDWEDKHANLRRMERLAEETAGMADVLFFPEMMTTGFSMNVQALAEPFEEGETIMSLKRVTARHGLALSATMAVRENGKFYNRAYFVTPEGEVFHQDKRHLFRVGGEHEVMTPAQERRIFNYRGWKIFIIPCYDLRFPVWCTNTDLEYDLLVCMANWPEPRRAVWQTLLQARAMENYAYVCGINRVGEDGIGLRYTGDSAILSPRGEYLATCAEGEEKVLYHTLDKGAMQRFRDKFPAWMDMDSFVINYDTDLHP","1434858 1434040","TIGR ID: PG1354","conserved hypothetical protein (amidase-type enzyme)","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 10-266 are 43% similar to gb|AAG07184.1|AE004798_7 conserved hypothetical protein of Pseudomonas aeruginosa, residues 10-263 are 40% similar to gb|AAC73323.1| putative amidase-type enzyme of Escherichia coli K12, residues 12-260 are 32% similar to pir||E69863 conserved hypothetical protein of Bacillus subtilis.","
InterPro
IPR003010
Domain
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
G3DSA:3.60.110.10\"[10-259]TNtlse/CNhydtse
PF00795\"[11-174]TCN_hydrolase
PS50263\"[10-273]TCN_HYDROLASE
SSF56317\"[1-262]TNtlse/CNhydtse
noIPR
unintegrated
unintegrated
PIRSF001253\"[10-272]TNitrilase
PTHR23088\"[90-261]TPTHR23088


","BeTs to 11 clades of COG0388COG name: Predicted amidohydrolaseFunctional Class: RThe phylogenetic pattern of COG0388 is A-tkYQVCEBR-UJ-------Number of proteins in this genome belonging to this COG is 2","***** IPB001110 (Uncharacterized protein family UPF0012) with a combined E-value of 1.3e-15. IPB001110A 114-122 IPB001110B 144-167 IPB001110C 182-198 IPB001110D 215-224","Residues 11-263 are 40% similar to a (PROTEIN HYDROLASE NITRILASE ALIPHATIC) protein domain (PD000957) which is seen in YAFV_ECOLI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Feb 28 15:20:58 MST 2001","Wed Feb 28 15:20:58 MST 2001","Wed Feb 28 15:20:58 MST 2001","Wed Feb 28 15:20:58 MST 2001","Wed Feb 28 15:20:58 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Feb 28 15:20:58 MST 2001","-46% similar to PDB:1J31 Crystal Structure of Hypothetical Protein PH0642 from Pyrococcus horikoshii (E_value = 2.2E_13);-42% similar to PDB:1F89 Crystal structure of Saccharomyces cerevisiae Nit3, a member of branch 10 of the nitrilase superfamily (E_value = 5.9E_11);","","","Residues 11 to 174 (E-value = 1.3e-16) place PG1189 in the CN_hydrolase family which is described as Carbon-nitrogen hydrolase (PF00795)","Wed Feb 28 15:20:58 MST 2001","34541040","","","","","","1","","","PG1354" "PG1190","1435385","1434858","528","TTGTTGCTCAGGATGATGGGCTGGAAAGCCCTCGTCCCATCTGCAAATCCGCTCCAAAGCGTCATTTGCGTGGCTCCTCATACCAGCAATTACGACTTTTTGCTGGGCAAACTCTACTATTGGTCTATCGGTCGGAAAGCCGGCTTCCTGATGAAAAAGGAATGGTTTTTCTTCCCTTTGGGACCGATCTTCAGGGCTATGGGAGGTATCCCGATCGATCGCTCGAAGCGAGGTTCCACTGTCGAACAAGTACGCGAATTTTTTCAGCGGCATGCTGTTTTCAATGTTGCTATCACCCCGGAGGGTACAAGGGACTATTCTCCTCAGTGGAAAACGGGATTCTATCGCATCGCCGTAGGAGCCGGAGTGCCTATTCAGCTCGCTGTGATCGACTATAGCTATAAAGAAATGAGCGTATTCGAGCTGTTCACCCCTACGGGCAATGAAGAAGCGGATATTGCCTACATCAGAAGTCGGTACAGGGCATCACAGGCACGGCACCCCCGAAACTTTGCAGAATCAGAAATA","10.50","7.67","20153","LLLRMMGWKALVPSANPLQSVICVAPHTSNYDFLLGKLYYWSIGRKAGFLMKKEWFFFPLGPIFRAMGGIPIDRSKRGSTVEQVREFFQRHAVFNVAITPEGTRDYSPQWKTGFYRIAVGAGVPIQLAVIDYSYKEMSVFELFTPTGNEEADIAYIRSRYRASQARHPRNFAESEI","1435457 1434858","TIGR ID: PG1355","conserved hypothetical protein (probable 1-acylglycerol-3-phosphate O-acyltransferase)","Inner membrane, Cytoplasm","A few significant hits and one weak hit in gapped BLAST; e.g. residues 3-169 are 39% similar to gb|AAF12061.1|AE002081_6 hypothetical protein of Deinococcus radiodurans, residues 2-167 are 37% similar to gb|AAF83010.1|AE003873_7 conserved hypothetical protein of Xylella fastidiosa, residues 2-168 are 37% similar to gb|AAG03747.1|AE004473_9 hypothetical protein of Pseudomonas aeruginosa, residues 4-125 are 32% similar to gi|7477873|pir||D70521 1-acylglycerol-3-phosphate O-acyltransferase homolog of Mycobacterium tuberculosis.","
InterPro
IPR002123
Domain
Phospholipid/glycerol acyltransferase
PF01553\"[21-131]TAcyltransferase
SM00563\"[21-133]TPlsC
noIPR
unintegrated
unintegrated
PTHR10434\"[17-143]T1-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE
signalp\"[1-17]?signal-peptide


","BeTs to 5 clades of COG0204COG name: 1-acyl-sn-glycerol-3-phosphate acyltransferaseFunctional Class: IThe phylogenetic pattern of COG0204 is ----YQvCEbRhujgpolINXNumber of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","Residues 27-125 are 35% similar to a (ACYLTRANSFERASE TRANSFERASE PROTEIN PHOSPHOLIPID) protein domain (PD000989) which is seen in O07807_MYCTU.","","Thu Jun 14 11:36:49 MDT 2001","","Thu Jun 14 11:36:49 MDT 2001","Thu Jun 14 11:36:49 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:36:49 MDT 2001","Thu Jun 14 11:36:49 MDT 2001","","","Wed Feb 28 15:34:59 MST 2001","Mon Jun 25 10:36:16 MDT 2001","Wed Feb 28 15:34:59 MST 2001","","Mon Jun 25 10:36:16 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Feb 28 15:34:59 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 9 to 131 (E-value = 1.3e-06) place PG1190 in the Acyltransferase family which is described as Acyltransferase (PF01553)","Mon Jun 25 10:36:16 MDT 2001","34541041","","","","","","1","","","PG1355" "PG1191","1435942","1435457","486","GTGTCATTTGTGTCTGTCCTGTCGATTGCTCATAAGAAGGGCAGGGGATGGCCGTTGCTCGACATGGAAATAAGAGAGCTTTGCTGTATGCTACATAAGGTGTTCTATTTGGTACGATGTACGGGGATAGGCTTTGATTTTTTCCGTAAGTTTGTATTGATATTGTTTCTTGCATACACATTCAAAACTATTGACAGCATGGCAAGCGAAAGAAAACTGAAAAAGCAGATAACCGGAGCCATTTCCGAAGTCTTTACTGATGCATTCCTGCTCAAACTCTTTGTGAAAGAGGAAAAAAACGCAGAGGTGGAAACTATCCTCAATCGTATTCTCCAACTTCAAGATACCACCATTGCCAAGATTCGTTGCAACGACGGTAAGCACAATCCTGCACTCGTAAAGAAATATTATCGCCGGCTCGTGGATGATTTCAAGGAAGAGCTGTCCGAGATCGTGAAGAGTATTTCGGCGTGTGCGTCTGATAAT","9.30","6.48","18661","VSFVSVLSIAHKKGRGWPLLDMEIRELCCMLHKVFYLVRCTGIGFDFFRKFVLILFLAYTFKTIDSMASERKLKKQITGAISEVFTDAFLLKLFVKEEKNAEVETILNRILQLQDTTIAKIRCNDGKHNPALVKKYYRRLVDDFKEELSEIVKSISACASDN","1435942 1435457","TIGR ID: PG1356","conserved hypothetical protein","Cytoplasm","This sequence corresponds to gi:34397357 in Genbank.Its nearest neighbor in the NR database is gi:29345671 from Bacteroides thetaiotaomicron VPI-5482.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon Mar 7 14:00:59 2005","Mon Mar 7 14:00:59 2005","Wed Feb 28 15:36:20 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Feb 28 15:36:20 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Feb 28 15:36:20 MST 2001","34541042","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Mon Mar 7 14:00:59 2005","","1","","","PG1356" "PG1192","1435936","1436184","249","ATGACACACATAGTTCATCAAGCCTCTTGGAAGTCGCAGGAATTGGCTACATTTGCAAAAACACAAACGACTTCAACGAAGCTAAATATCTCTATCCTAACACTTATCATCCGAATTAAAAACGGCTTAATAATGAACGCGTATATTCATCCATTTATGCTCCTTACCCCTCACTCTCCTATTATCTTTGTCTTATCTACCGTATGCCAATCCGGTTTCGGACAAAAGAGCATTTTCTCCTATGATGAA","10.10","3.89","9336","MTHIVHQASWKSQELATFAKTQTTSTKLNISILTLIIRIKNGLIMNAYIHPFMLLTPHSPIIFVLSTVCQSGFGQKSIFSYDE","1435936 1436184 [Delay by 174 1530 181 2]","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","","Wed Feb 28 15:37:17 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Feb 28 15:37:17 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu May 31 15:35:57 MDT 2001","","","","","","","1","","","" "PG1193","1437426","1436749","678","ATGGAATTACAAACAGAACGTTTGATTTTGAGGCCGTGGCGAGAGGGCGACGCCGAAGCACTTTACAAGTATGCGCAAAACCCTAATGTTGGCCCGATAGCTGGTTGGCCACCACATACGAGCATTGAGAATAGTCGTGAGATCATTGTGACCGTCCTTAGTGCGCCAGAAAATTATGCTGTTGTATTGAAAGGGACTGCTGAAGCCATTGGTAGCATTGGAATAATGACCTCAAGAAGCGAAATTCACTCTGCAAAAATGGCAGATAACGAGTGTGAAATAGGATTCTGGATTGGCGAACCATTTTGGGGACAGGGCTTAATTCCTGAAGCTGTAAACGAAGTGCTTCGGTATGCTTTTGAAAATTTACGGCAGACAGCGGTTTGGTGCGGTTATTTTGACGGCAATGAAAAATCGAAGAGGGTACAAGAAAAATGCGGGTTTACTTACACTCACACAGAACACAACAAACCGATTCCATTGATGAACGATTTTCGTACAGAACATTTTACGAAAATCACATTAGACGATTGGAGATTACTTGATCATCTTCGCGCAGCAAGCTATCCAAACCTCACTATCTGTACAAAAAGCCAACTTTGCGACAAAAATGTATCTAAGCAGCGGATTCAATGTGGTCAAAGAGAATCAAGTAGATTACGTAATGGTAAAGAGACT","6.80","-0.83","25773","MELQTERLILRPWREGDAEALYKYAQNPNVGPIAGWPPHTSIENSREIIVTVLSAPENYAVVLKGTAEAIGSIGIMTSRSEIHSAKMADNECEIGFWIGEPFWGQGLIPEAVNEVLRYAFENLRQTAVWCGYFDGNEKSKRVQEKCGFTYTHTEHNKPIPLMNDFRTEHFTKITLDDWRLLDHLRAASYPNLTICTKSQLCDKNVSKQRIQCGQRESSRLRNGKET","1437426 1436749","TIGR ID: PG1358","acetyltransferase","Cytoplasm","A few significant hits and numerous weak hits in gapped BLAST; e.g. residues 3-178 are 30% similar to gi|10173452|dbj|BAB04556.1| unknown conserved protein of Bacillus halodurans, residues 3-181 are 30% similar to gi|12723710|gb|AAK04888.1|AE006312_8 acetyl transferase of Lactococcus lactis subsp. lactis, residues 3-148 are 31% similar to gi|10173313|dbj|BAB04418.1| ribosomal-protein-alanine N-acetyltransferase of Bacillus halodurans.","
InterPro
IPR000182
Domain
GCN5-related N-acetyltransferase
PF00583\"[61-149]TAcetyltransf_1
PS51186\"[8-167]TGNAT
noIPR
unintegrated
unintegrated
G3DSA:3.40.630.30\"[3-178]TG3DSA:3.40.630.30
SSF55729\"[1-178]TSSF55729


","BeTs to 5 clades of COG1670COG name: Acetyltransferases, including N-acetylases of ribosomal proteinsFunctional Class: JThe phylogenetic pattern of COG1670 is ----y-v-EBR-uj-p----xNumber of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","Residues 74-147 are 35% similar to a (TRANSFERASE PROTEIN ACETYLTRANSFERASE) protein domain (PD166242) which is seen in P96579_BACSU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue May 8 14:24:18 MDT 2001","Wed Feb 28 15:52:04 MST 2001","Wed Feb 28 15:52:04 MST 2001","","Wed Feb 28 15:52:04 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Feb 28 15:52:04 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 61 to 149 (E-value = 2.1e-05) place PG1193 in the Acetyltransf_1 family which is described as Acetyltransferase (GNAT) family (PF00583)","Tue May 8 14:24:18 MDT 2001","34541044","","","","","","1","","","PG1358" "PG1194","1438708","1437740","969","GTGGCAAAATCCGATAGAACGTTTTTAATACCGGTTACGATATTGATCGCCCTCGTGTGTAGGATGCTGTCCTACGCATGGGGGCTTTCTGCTGATATTTCTCTTCAAGAGGGTAGTCTTCCCCTCTTCGGCACGATCCCTTTCTTATGGCAAACCGTTATCTCGTTTGCCATTGGCTTGGTTGCATCTTTTATTGCGGTTCGCTTCAGTGCTTTCTATCTTCTGCTTCATGAAGGTGGATTCCGGCCATTTGCTTTCTTGATGATTCTTTTGCTGAACACCCATCAGGTTTTCTTCCCCATGCAGCCATACTCGCTGTCGATACTGCTGCTGATAGTACTCTTTTTCTGCCTTTTTGGCACTTATGGCCGTAATAATATCCCGCCCAAGATGCTTAACGTAGGCTTTTGTGTCGGGCTTTCGGCTGTGTTGTGGTCTCCTTCGCTGCTTCTTGCACCGTTTGTGCTCATACAGTTTTATCTGATGAAGAGTTTGTCTTTCAAAAACTTGATTGCATTTTTCTTCGGACTGTTGCTTCCTCTGTGGTGCTGTCTTCCTTTATTGGTATTGGCCGGACAGGAGCAGTTTGTTATCGACAATATGACCCTTTTGACTCGGTGGGGATTTTCTTATCGGATTTTACAAATGACTGCGTGGGAGGGGCTGTATCCGGCTCTACTGTCAGTGCTGTATCTTATCTCCTTTGTCCACTTGCAACTGACCTATACGAGTGAAAAAGTGATTGCACGCATTTACTTCTTCAGCCTTTTGTGTGCCGGTTGTTATATGCTGCTACTCTCTGCCGTGATGTCTGCTGCTTCCGAAGGATTCGTATATCTGGCTACCTTCCCTGTGTCGGTACATGCAGCTCGTTTCTTGAATTCTCTGAATCGTCGTGCTGCCAATATCTTGATTCCTTTTACGTTTTTGGTTTTCTTGTCCTCTTTTTTGCTGTCTTCTTTTTTGCTT","9.10","7.61","36354","VAKSDRTFLIPVTILIALVCRMLSYAWGLSADISLQEGSLPLFGTIPFLWQTVISFAIGLVASFIAVRFSAFYLLLHEGGFRPFAFLMILLLNTHQVFFPMQPYSLSILLLIVLFFCLFGTYGRNNIPPKMLNVGFCVGLSAVLWSPSLLLAPFVLIQFYLMKSLSFKNLIAFFFGLLLPLWCCLPLLVLAGQEQFVIDNMTLLTRWGFSYRILQMTAWEGLYPALLSVLYLISFVHLQLTYTSEKVIARIYFFSLLCAGCYMLLLSAVMSAASEGFVYLATFPVSVHAARFLNSLNRRAANILIPFTFLVFLSSFLLSSFLL","1438708 1437740","TIGR ID: PG1359","hypothetical protein","Inner membrane, Cytoplasm","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-28]?signal-peptide
tmhmm\"[9-29]?\"[48-67]?\"[72-92]?\"[102-122]?\"[132-152]?\"[171-191]?\"[222-242]?\"[261-281]?\"[302-322]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","","Wed Feb 28 15:53:38 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Feb 28 15:53:38 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Feb 28 15:53:38 MST 2001","34541045","","","","","","1","","","PG1359" "PG1195","1440006","1438714","1293","ATGAATATCCTTTTATTAGGCTCCGGCGGGCGCGAACATGCCTTGGCTTGGAAAATAGCCCAAAGCCCGCTAACGAACAAGCTCTTCGTTGCTCCCGGAAACGGAGGAACGGAGGATGTAGCGATCAACATACCCGAAGTGGATGTGAACGACTTTGCTGCCGTTGCCGAAGTGGTACAGCGCGAGTCTATCGACCTGCTGGTAGTGGGGCCTGAAGAACCCCTTGTACGTGGCATAGTGGACTACTTCCGAAATCACGACACACTGCACGATCTCCTCATTGTGGGGCCCGATGCCAAGGGTGCACGGTTGGAAGGAAGCAAGGATTTCAGCAAGTCTTTTATGAAACGACACGGGATTCCTACTGCCGCTTATCAGACATTCACGGCTGACCAAACAGATGCAGGCAAGGCATTCATAGATACGATGCAGGCTCCTTATGTACTGAAAGCCGATGGTTTGGCCGCCGGCAAGGGGGTGATTATTGCTCCGACTGCAGAAGAAGCCAAACGGGAGTTGGCTGAGATGCTCGGTGGCAAATTCGGTGCTGCAAGCCGTCGTGTGGTGATCGAAGAGTTTCTCGATGGCATAGAATGCTCCGTATTTGTTGCTACCGATGGCAAAGACTATCACATACTTCCAGTCGCCAAAGATTATAAGCGAATCGGAGATGGAGATACCGGGCTCAATACCGGCGGAATGGGGAGCGTTTCGCCAGTACCTTTCGCCGATGAAGCATTCATGCGGAAGGTGGAAGAGCGGATTATCCGGCCTACGATATCGGGACTGATAGCCGAAGGAATCGATTATCGCGGATTCATCTTCGTGGGACTGATGAATGTAGGAGGAGATCCTTATGTGGTAGAATATAATTGCCGTATGGGAGATCCGGAAACGGAAGTCGTCATGCTGCGAATCGGATCCGACTTTGTCGAGTTGATCCGCCGGATGGCAGCCGGTTGTATCGGTGATTATCAGATGCAAGAAGACCGACGTTGTGCCGCTTCCGTGATGCTTGTGTCGAGAGGATACCCGGGTAGCTATGAGAAAGGAATGGAGATGGATATTCCCATTCCTCCGGCTGATACGATTCTGTTCCATGCCGGTACGGTAGCAAGGGATGGCAAGGTATATACCGATGGTGGTCGTGTAATGGCTGTCAGCAGCTATGGATCTACACCTGAGGCTGCCTTGCAACGTTGTTATATCCATGCTCAGCAGGTACTGTTCGATGGCAAGAATTATCGTCACGACATCGGTCGGGACATGCTCCATTGGCCGAAAGTTGAACGT","5.00","-13.03","46920","MNILLLGSGGREHALAWKIAQSPLTNKLFVAPGNGGTEDVAINIPEVDVNDFAAVAEVVQRESIDLLVVGPEEPLVRGIVDYFRNHDTLHDLLIVGPDAKGARLEGSKDFSKSFMKRHGIPTAAYQTFTADQTDAGKAFIDTMQAPYVLKADGLAAGKGVIIAPTAEEAKRELAEMLGGKFGAASRRVVIEEFLDGIECSVFVATDGKDYHILPVAKDYKRIGDGDTGLNTGGMGSVSPVPFADEAFMRKVEERIIRPTISGLIAEGIDYRGFIFVGLMNVGGDPYVVEYNCRMGDPETEVVMLRIGSDFVELIRRMAAGCIGDYQMQEDRRCAASVMLVSRGYPGSYEKGMEMDIPIPPADTILFHAGTVARDGKVYTDGGRVMAVSSYGSTPEAALQRCYIHAQQVLFDGKNYRHDIGRDMLHWPKVER","1440006 1438714","TIGR ID: PG1360","phosphoribosylamine--glycine ligase (GARS) (glycinamide ribonucleotide synthetase) (phosphoribosylglycinamide synthetase)","Cytoplasm","Numerous significant hits to phosphoribosylamine--glycine ligase (glycinamide ribonucleotide synthetase) (phosphoribosylglycinamide synthetase) in gapped BLAST; e.g. residues 1-431 are 47% similar to gb|AAA27198.1| 5-phosphoribosylglycinamide synthetase of Salmonella typhimurium, residues 1-431 are 47% similar to pir||AJECQG phosphoribosylamine--glycine ligase of Escherichiacoli, residues 1-420 are 45% similar to gb|AAC22545.1| phosphoribosylamine--glycine ligase of Haemophilus influenzae Rd.This sequence is similar to BT3253.","
InterPro
IPR000115
Domain
Phosphoribosylglycinamide synthetase
G3DSA:3.90.600.10\"[333-429]TGars
PF01071\"[106-299]TGARS_A
PF02843\"[333-424]TGARS_C
PF02844\"[1-105]TGARS_N
TIGR00877\"[1-425]TpurD
InterPro
IPR011054
Domain
Rudiment single hybrid motif
SSF51246\"[331-426]TRudmnt_hyb_motif
InterPro
IPR011761
Domain
ATP-grasp fold
PS50975\"[112-319]TATP_GRASP
InterPro
IPR013815
Domain
ATP-grasp fold, subdomain 1
G3DSA:3.30.1490.20\"[126-194]TATP_grasp_subdomain_1
InterPro
IPR013816
Domain
ATP-grasp fold, subdomain 2
G3DSA:3.30.470.20\"[195-332]TATP_grasp_subdomain_2
InterPro
IPR013817
Domain
Pre-ATP-grasp fold
G3DSA:3.40.50.20\"[1-98]TPre-ATP_grasp
noIPR
unintegrated
unintegrated
PTHR10520\"[108-421]TPTHR10520
PTHR10520:SF3\"[108-421]TPTHR10520:SF3
SSF52440\"[1-106]TSSF52440
SSF56059\"[107-330]TSSF56059


","BeTs to 12 clades of COG0151COG name: Phosphoribosylamine-glycine ligaseFunctional Class: FThe phylogenetic pattern of COG0151 is amtkyqvcebrhuj-------Number of proteins in this genome belonging to this COG is 1","***** IPB000115 (Phosphoribosylglycinamide synthetase) with a combined E-value of 6.4e-121. IPB000115A 3-38 IPB000115B 55-94 IPB000115C 102-130 IPB000115D 148-169 IPB000115E 189-241 IPB000115F 285-310 IPB000115G 334-356 IPB000115H 378-389 IPB000115I 412-423","Residues 295-420 are 39% similar to a (LIGASE RIBONUCLEOTIDE GLYCINAMIDE) protein domain (PD002812) which is seen in PUR2_SALTY.Residues 1-64 are 50% similar to a (LIGASE RIBONUCLEOTIDE GLYCINAMIDE) protein domain (PD002771) which is seen in PUR2_YARLI.Residues 60-293 are 52% similar to a (LIGASE SYNTHETASE CARBOXYLASE CARBAMOYL-PHOSPHATE) protein domain (PD000180) which is seen in PUR2_ECOLI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Mar 15 12:33:59 MST 2001","Mon Dec 22 10:12:51 2003","Thu Mar 1 08:59:17 MST 2001","Thu Mar 1 08:59:17 MST 2001","Thu Mar 1 08:59:17 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 08:59:17 MST 2001","-62% similar to PDB:1GSO GLYCINAMIDE RIBONUCLEOTIDE SYNTHETASE (GAR-SYN) FROM E. COLI. (E_value = 3.9E_98);-57% similar to PDB:1VKZ Crystal structure of Phosphoribosylamine--glycine ligase (TM1250) from Thermotoga maritima at 2.30 A resolution (E_value = 2.3E_74);","","","Residues 1 to 105 (E-value = 3.2e-42) place PG1195 in the GARS_N family which is described as Phosphoribosylglycinamide synthetase, N domain (PF02844)Residues 107 to 190 (E-value = 3.3e-37) place PG1195 in the GARS_B family which is described as Phosphoribosylglycinamide synthetase, B domain (PF02842)Residues 191 to 329 (E-value = 2e-52) place PG1195 in the GARS_A family which is described as Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain (PF01071)Residues 333 to 424 (E-value = 1.4e-22) place PG1195 in the GARS_C family which is described as Phosphoribosylglycinamide synthetase, C domain (PF02843)","Mon Dec 22 10:12:51 2003","34541046","","","Chopra,A.K., Peterson,J.W. and Prasad,R. 1991. Nucleotide sequence analysis of purH and purD genes from Salmonella typhimurium. Biochim. Biophys. Acta 1090: 351-354. PubMed: 1954258.Aiba,A. and Mizobuchi,K. 1989. Nucleotide sequence analysis of genes purH and purD involved in the de novo purine nucleotide biosynthesis of Escherichia coli. J. Biol. Chem. 264 (35): 21239-21246. PubMed: 2687276.","","Thu Mar 1 08:59:17 MST 2001","1","","","PG1360" "PG1196","1442201","1440006","2196","ATGAAGAAGACAATCTTCCAACAACTATTTCTGTCTGTTTGTGCCCTTACAGTGGCCTTGCCTTGTTCGGCTCAGTCTCCTGAAACGAGTGGTAAGGAGTTTACTCTTGAGCAACTGATGCCCGGAGGAAAAGAGTTTTATAACTTTTACCCCGAATACGTGGTCGGTTTGCAATGGATGGGAGACAATTATGTCTTTATCGAGGGTGATGATTTAGTTTTTAATAAGGCGAATGGCAAATCGGCTCAGACGACCAGATTTTCTGCTGCCGATCTCAATGCACTCATGCCGGAGGGATGCAAATTTCAGACGACTGATGCTTTCCCTTCATTCCGCACACTCGATGCCGGACGGGGACTGGTCGTTCTATTTACCCAAGGAGGATTAGTCGGATTCGATATGCTTGCTCGAAAGGTGACTTATCTTTTCGATACCAATGAGGAGACGGCTTCTTTGGATTTTTCTCCTGTGGGAGACCGTGTTGCCTATGTCAGAAACCATAACCTTTACATTGCTCGTGGAGGTAAATTGGGAGAAGGTATGTCACGAGCTATCGCTGTGACTATCGATGGAACTGAGACTCTCGTATATGGCCAGGCCGTACACCAGCGTGAATTCGGTATCGAAAAAGGTACATTCTGGTCTCCAAAAGGGAGCTGCCTTGCTTTCTATCGAATGGATCAGAGTATGGTGAAGCCTACCCCGATAGTGGATTATCATCCGCTCGAAGCCGAGTCCAAACCGCTTTATTACCCCATGGCAGGTACTCCGTCACACCACGTTACGGTTGGGATCTATCATCTGGCCACAGGTAAGACCGTCTATCTACAAACGGGTGAACCCAAGGAAAAATTTCTGACGAATTTGAGTTGGAGTCCGGACGAAAATATCTTGTATGTAGCTGAGGTGAATCGTGCTCAAAACGAATGTAAGGTAAATGCCTATGACGCTGAGACCGGTAGATTCGTCCGTACGCTTTTTGTTGAAACCGATAAACATTATGTAGAGCCGTTACATCCCCTGACATTCCTTCCGGGAAGTAACAATCAGTTCATTTGGCAGAGCCGTCGCGACGGATGGAACCATCTCTATCTGTATGATACTACAGGTCGTCTGATCCGTCAGGTGACAAAAGGGGAGTGGGAGGTTACAAACTTTGCAGGCTTCGATCCCAAGGGAACACGGCTCTATTTCGAAAGTACCGAAGCCAGCCCTCTCGAACGCCATTTTTACTGTATTGATATCAAAGGAGGAAAGACAAAAGATCTGACTCCGGAGTCGGGAATGCACCGCACTCAGCTATCTCCTGATGGTTCTGCCATAATCGATATTTTTCAGTCACCTACTGTCCCGCGTAAGGTTACAGTGACAAATATCGGCAAAGGGTCTCACACACTCTTGGAGGCTAAGAACCCCGATACGGGCTATGCCATGCCGGAGATCAGAACGGGTACCATCATGGCGGCCGATGGGCAGACACCTCTTTATTACAAGCTCACGATGCCGCTTCATTTCGATCCGGCAAAGAAATATCCTGTTATTGTCTATGTTTACGGAGGACCTCATGCCCAACTCGTAACCAAGACATGGCGCAGCTCTGTCGGTGGATGGGATATCTATATGGCACAGAAAGGCTATGCCGTCTTTACGGTGGATAGTCGCGGATCTGCCAATAGAGGGGCTGCTTTCGAGCAGGTTATTCATCGTCGTTTGGGGCAGACCGAGATGGCCGATCAGATGTGCGGTGTGGATTTCCTCAAGAGCCAATCATGGGTGGATGCCGATAGAATAGGAGTACATGGCTGGAGCTATGGTGGCTTTATGACTACGAATCTGATGCTTACGCACGGCGATGTCTTCAAAGTCGGAGTAGCCGGCGGGCCTGTCATAGACTGGAATCGATATGAGATTATGTACGGTGAGCGTTATTTCGATGCGCCACAGGAAAATCCCGAAGGATACGATGCTGCCAACCTGCTCAAACGAGCCGGTGATCTGAAAGGACGACTTATGCTGATTCATGGAGCGATCGATCCGGTCGTGGTATGGCAGCATTCACTCCTTTTCCTTGATGCTTGCGTGAAGGCACGCACCTATCCTGACTATTACGTCTATCCGAGCCACGAACATAATGTGATGGGGCCGGACAGAGTACATTTGTATGAAACAATAACCCGTTATTTCACAGATCACTTA","6.60","-4.79","82260","MKKTIFQQLFLSVCALTVALPCSAQSPETSGKEFTLEQLMPGGKEFYNFYPEYVVGLQWMGDNYVFIEGDDLVFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGRGLVVLFTQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTKDLTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGSHTLLEAKNPDTGYAMPEIRTGTIMAADGQTPLYYKLTMPLHFDPAKKYPVIVYVYGGPHAQLVTKTWRSSVGGWDIYMAQKGYAVFTVDSRGSANRGAAFEQVIHRRLGQTEMADQMCGVDFLKSQSWVDADRIGVHGWSYGGFMTTNLMLTHGDVFKVGVAGGPVIDWNRYEIMYGERYFDAPQENPEGYDAANLLKRAGDLKGRLMLIHGAIDPVVVWQHSLLFLDACVKARTYPDYYVYPSHEHNVMGPDRVHLYETITRYFTDHL","1442201 1440006","Banbula et al. (1999) demonstrate tripeptidyl peptidase activity for this enzyme, though it lacks structural similarity to other known tripeptidyl peptidases. True DPP-IV enzymes from their point of view are apparently represented by PG0459, PG1528, PG0652.Unfortunately ptpA also denotes PG1433, a predicted protein-tyrosine-phosphatase.TIGR ID: PG1361","prolyl tripeptidyl peptidase (Ptp-A)","Periplasm, Cytoplasm, Extracellular","Residues 154-732 of PG1196 are similar to previously sequenced P.gingivalis proteins in Genbank, AAC46184 and BAA28265. Numerous significant hits to dipeptidyl peptidase proteins in gapped BLAST; e.g. residues 154-732 are 34% similar to prf||2115194A dipeptidyl peptidase IV of Flavobacterium meningosepticum, residues 155-721 are 34% similar to pir||JC5142 X-Pro dipeptidyl-peptidase of Xanthomonas maltophilia, residues 155-732 are 30% similar to dbj|BAB10391.1| dipeptidyl peptidase IV-like protein of Arabidopsis thaliana.This sequence is similar to BT3254.","
InterPro
IPR001375
Domain
Peptidase S9, prolyl oligopeptidase active site region
PF00326\"[532-732]TPeptidase_S9
InterPro
IPR002469
Domain
Peptidase S9B, dipeptidylpeptidase IV N-terminal
PF00930\"[115-452]TDPPIV_N
noIPR
unintegrated
unintegrated
G3DSA:2.140.10.30\"[30-468]TG3DSA:2.140.10.30
G3DSA:3.40.50.1820\"[485-732]TG3DSA:3.40.50.1820
PTHR11731\"[154-732]TPTHR11731
PTHR11731:SF12\"[154-732]TPTHR11731:SF12
SSF53474\"[479-732]TSSF53474
SSF82171\"[30-481]TSSF82171


","BeTs to 4 clades of COG1506COG name: Dipeptidyl aminopeptidases/acylaminoacyl-peptidasesFunctional Class: EThe phylogenetic pattern of COG1506 is ---KY--c-b-----------Number of proteins in this genome belonging to this COG is 5","***** PF00930 (Dipeptidyl peptidase IV (DPP IV) N-terminal region) with a combined E-value of 3.9e-48. PF00930B 182-232 PF00930C 243-269 PF00930E 376-386 PF00930F 425-470 PF00930G 502-539 PF00930H 542-584 PF00930I 620-647 PF00930J 669-689***** IPB002471 (Prolyl endopeptidase family serine active site) with a combined E-value of 4.9e-08. IPB002471A 69-81 IPB002471B 578-608","Residues 601-727 are 41% similar to a (DIPEPTIDYL HYDROLASE PROTEIN IV PEPTIDASE PROTEASE) protein domain (PD003048) which is seen in Q47900_FLAME.Residues 154-385 are 33% similar to a (DIPEPTIDYL IV HYDROLASE PROTEASE) protein domain (PD003086) which is seen in Q47900_FLAME.Residues 477-599 are 49% similar to a (DIPEPTIDYL HYDROLASE IV PROTEIN PEPTIDASE PROTEASE) protein domain (PD001060) which is seen in P95782_BBBBB.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Mon Dec 22 10:14:20 2003","Tue Jun 5 10:29:23 MDT 2001","Mon Dec 22 10:14:20 2003","Thu Mar 1 10:06:26 MST 2001","Thu Mar 1 10:06:26 MST 2001","Thu Mar 1 10:06:26 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 154-732 are 31% similar to PG0459, a predicted dipeptidyl peptidase IV (DPP IV) N-terminal region. Similarites are also seen to PG1528, PG0652, PG0897.","Thu Mar 1 10:06:26 MST 2001","Thu Mar 1 10:06:26 MST 2001","-43% similar to PDB:1ORV Crystal Structure of Porcine Dipeptidyl Peptidase IV (CD26) (E_value = 1.3E_43);-43% similar to PDB:1ORW Crystal Structure of Porcine Dipeptidyl Peptidase IV (CD26) in Complex with a Peptidomimetic Inhibitor (E_value = 1.3E_43);-43% similar to PDB:2AJ8 Porcine dipeptidyl peptidase IV (CD26) in complex with 7-Benzyl-1,3-dimethyl-8-piperazin-1-yl-3,7-dihydro-purine-2,6-dione (BDPX) (E_value = 1.3E_43);-43% similar to PDB:2AJB Porcine dipeptidyl peptidase IV (CD26) in complex with the tripeptide tert-butyl-Gly-L-Pro-L-Ile (tBu-GPI) (E_value = 1.3E_43);-43% similar to PDB:2AJC Porcine dipeptidyl peptidase IV (CD26) in complex with 4-(2-Aminoethyl)-benzene sulphonyl fluoride (AEBSF) (E_value = 1.3E_43);","","","Residues 34 to 525 (E-value = 1.1e-35) place PG1196 in the DPPIV_N family which is described as Dipeptidyl peptidase IV (DPP IV) N-terminal region (PF00930)Residues 532 to 608 (E-value = 2.1e-06) place PG1196 in the Peptidase_S9 family which is described as Prolyl oligopeptidase family (PF00326)","Mon Dec 22 10:14:20 2003","34541047","","Banbula A, Mak P, Bugno M, Silberring J, Dubin A, Nelson D, Travis J, Potempa J. Prolyl tripeptidyl peptidase from Porphyromonas gingivalis. A novel enzyme with possible pathological implications for the development of periodontitis.J Biol Chem. 1999 Apr 2;274(14):9246-52.PMID: 10092598","Kabashima,T., Yoshida,T., Ito,K. and Yoshimoto,T. 1995. Cloning, sequencing, and expression of the dipeptidyl peptidase IVgene from Flavobacterium meningosepticum in Escherichia coli. Arch. Biochem. Biophys. 320 (1): 123-128. PubMed: 7793970.Kiyama,M., Hayakawa,M., Shiroza,T., Nakamura,S., Takeuchi,A.,Masamoto,Y. and Abiko,Y. 1998. Sequence analysis of the Porphyromonas gingivalis dipeptidyl peptidase IV gene. Biochim. Biophys. Acta 1396 (1): 39-46. PubMed: 9524216.Kumagai,Y., Konishi,K., Gomi,T., Yagishita,H., Yajima,A. andYoshikawa,M. 2000. Enzymatic properties of dipeptidyl aminopeptidase IV produced by the periodontal pathogen Porphyromonas gingivalis and its participation in virulence. Infect. Immun. 68 (2): 716-724. PubMed: 10639438","Tue Jun 5 10:29:23 MDT 2001","Tue Jun 5 10:29:23 MDT 2001","1","","","PG1361" "PG1197","1443687","1442236","1452","ATGAATAACGATCTCCAATTTACTATGGTAGCTAAGACCCTTTATGGGTTGGAGGATGTCTTGGCTGCCGAACTAACAGCCTTGGGTGCTGAGGAGGTAACCGTCGGCCGGCGTATGGTCAGTTTTCGAGGAGATAAGAGGATGCTCTATCTTGCTAATCTCCGGTTGCGTACAGCACTGCGCATATTGAAACCTGTAATAACTTTCCATGCGAAGACGACAGATGAAATTTATGAAAGGCTCAGACTTTTCGATTGGACGACCGTTATCTCATCGGATCAAACTTTCTCCATTGATTCCGTCGTTTATTCCGATTCGTTCAAGAACAGTCAGTATATAAGTTATCGTACCAAAGATGCTTTGGTGGATTTCTTCAGTGATCGTGAGGGCAAACGTCCCTCTGTCCGGCTCTCCAATCCCGATATTTTACTGAACATACATGTGTCGCACGAGGAAGTAACCCTGTCGCTCGATAGTTCGGGCGATAGTCTGCACAAGCGAGGCTATCGTGTGGCCGAAACGACTGCTCCTCTAAATGAGGTGTTGGCTGCCGGTATCTTGCTCAAAGCCGGTTGGGACGGTAGTACGGATTTGATCGATCCTATGTGTGGATCCGGAACGTTCCTGATCGAAGCTGCCCTGATTGCATGCAATATTGCTCCCGGTATCTATAGGCGAGGCTTTGCTTTCCAGCGGTGGGCGGATTTCGATCTCGATCTATATGATGAGTTGTTCCATGACGACAGTGCGGAACGTGTATTCGATCATATCATCTACGGTTCCGATATTTTGCCACAGGCCGTGGCTGCGGCCAGAAGTAACGTGGAGCGAGCCGGTCTTGGCAGGTATATCTCTCTGAGTGTCCTTCCCATGCAGCAGCGTCCGAAGCCTGAATCCAAGGCTATGCTGGTGATGAATCCTCCCTATGGAGAACGTATCAAAGTGGAGGACATGCAGCAGTTGTATACCATGATCGGAGAGCGACTCAAGCATAATTATGCAGGTTGCTCTGCATGGATTCTGGCTTTCAAGCCGGAGCATTTCAATCATATCGGCCTTCGTCAGTCTCATCGAGAAAAGTTGATGAATGGAGCTTTGGAATGTGAGTTGCGAGGTTATGAACTCTTTGAGGGACGACGCGATTCATTTGCCGAAAGAAAAAGTCGTCGAGCCGAAGGAGAACAAGGCGTAGGACGGAGAATCGACCGTCGTGACGTTTCTGCCGGAAGGGAAAAACGCTCCAACTCCATGGATCGAGAAAATAAGTCTCCTTATCGTTCTCCTCGTCCTGATAAGCCTTTCAGAACTTCCGATAAAAGGAAAAAAGAGCATAATGATGAGCAGCAACGAGAGGCTCGCTGGCCGAACGATAGGTTCCGATCTTCGGATGAATCTGAAAGAGGACCTCGCAAATCCTCTTCAAAGCGGATTCAGGTGATCCGCAACGATGAA","8.80","6.51","55491","MNNDLQFTMVAKTLYGLEDVLAAELTALGAEEVTVGRRMVSFRGDKRMLYLANLRLRTALRILKPVITFHAKTTDEIYERLRLFDWTTVISSDQTFSIDSVVYSDSFKNSQYISYRTKDALVDFFSDREGKRPSVRLSNPDILLNIHVSHEEVTLSLDSSGDSLHKRGYRVAETTAPLNEVLAAGILLKAGWDGSTDLIDPMCGSGTFLIEAALIACNIAPGIYRRGFAFQRWADFDLDLYDELFHDDSAERVFDHIIYGSDILPQAVAAARSNVERAGLGRYISLSVLPMQQRPKPESKAMLVMNPPYGERIKVEDMQQLYTMIGERLKHNYAGCSAWILAFKPEHFNHIGLRQSHREKLMNGALECELRGYELFEGRRDSFAERKSRRAEGEQGVGRRIDRRDVSAGREKRSNSMDRENKSPYRSPRPDKPFRTSDKRKKEHNDEQQREARWPNDRFRSSDESERGPRKSSSKRIQVIRNDE","1443687 1442236","TIGR ID: PG1362","conserved hypothetical protein (possible oxidoreductase)","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 7-376 are 38% similar to dbj|BAA10293.1| hypothetical protein of Synechocystis sp., residues 8-382 are 32% similar to gb|AAG55434.1|AE005285_1 putative oxidoreductase of Escherichia coli O157:H7, residues 8-382 are 32% similar to gb|AAC74034.1| putative oxidoreductase of Escherichia coli K12, residues 10-397 are 31% similar to gb|AAF94643.1| conserved hypothetical protein of Vibrio cholerae.This sequence is similar to BT3255.","
InterPro
IPR000241
Domain
Putative RNA methylase
PF01170\"[167-372]TUPF0020
PS01261\"[200-211]TUPF0020
InterPro
IPR002052
Domain
N-6 Adenine-specific DNA methylase
PS00092\"[303-309]?N6_MTASE
InterPro
IPR002296
Family
N6 adenine-specific DNA methyltransferase, N12 class
PR00507\"[198-212]T\"[300-312]TN12N6MTFRASE
InterPro
IPR004114
Domain
THUMP
PF02926\"[61-159]TTHUMP
PS51165\"[48-159]TTHUMP
noIPR
unintegrated
unintegrated
SSF53335\"[116-332]TSSF53335


","BeTs to 6 clades of COG0116COG name: Predicted N6-adenine-specific DNA methylasesFunctional Class: LThe phylogenetic pattern of COG0116 is am-k---ceb-h---------Number of proteins in this genome belonging to this COG is 1","***** IPB000241 (Uncharacterized protein family UPF0020) with a combined E-value of 1.3e-24. IPB000241A 164-215 IPB000241B 301-310","Residues 235-366 are 34% similar to a (PROTEIN INTERGENIC REGION SLR0064) protein domain (PD011028) which is seen in Y064_SYNY3.Residues 7-172 are 34% similar to a (PROTEIN INTERGENIC REGION SLR0064) protein domain (PD016613) which is seen in Y064_SYNY3.Residues 40-171 are 28% similar to a (PROTEIN THIAMINE BIOSYNTHESIS THII) protein domain (PD004096) which is seen in Y438_METJA.Residues 176-213 are 63% similar to a (PROTEIN LONG INTERGENIC REGION) protein domain (PD098433) which is seen in YCBY_ECOLI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Jun 12 12:53:14 MDT 2001","Mon Dec 22 10:15:45 2003","Thu Mar 1 10:21:27 MST 2001","Thu Mar 1 10:21:27 MST 2001","Thu Mar 1 10:21:27 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 10:21:27 MST 2001","-39% similar to PDB:2OKC Crystal structure of Type I restriction enzyme StySJI M protein (NP_813429.1) from Bacteriodes thetaiotaomicron VPI-5482 at 2.20 A resolution (E_value = );-50% similar to PDB:1WS6 The Structure of Thermus thermphillus HB8 hypothetical protein TTHA0928 (E_value = );","","","Residues 61 to 159 (E-value = 9.8e-11) place PG1197 in the THUMP family which is described as THUMP domain (PF02926)Residues 167 to 372 (E-value = 3.2e-39) place PG1197 in the UPF0020 family which is described as Putative RNA methylase family UPF0020 (PF01170)","Mon Dec 22 10:15:45 2003","34541048","","","","","","1","","","PG1362" "PG1198","1443947","1444219","273","TTGGTTTTGCGGCTTCATTCGAGCAAGTTTCTCCTCATTGGTATTGTTGGCTGCTACTGTGTACCGACGGTAGCCGGATGGATTATTGGAGCCGGAGGTGGTATCGGCTCGTATGAACGCAATGTGAATCAGACGGCACAGCGTGGCACACAAGGTGCATACACGGGCAGCAAGGCGATGGGTGGAGGAGCACAAGTGCTGTTGCCGGTCATGTCGTTTGATGTCTCAAAGGGGGCACTCATTAAAGGGGAGCAAATTTCCTTGGGTGGAAAA","10.40","5.12","9265","LVLRLHSSKFLLIGIVGCYCVPTVAGWIIGAGGGIGSYERNVNQTAQRGTQGAYTGSKAMGGGAQVLLPVMSFDVSKGALIKGEQISLGGK","1443947 1444219","TIGR ID: PG1363","hypothetical protein","Extracellular","No hit found in gapped BLAST.","
InterPro
IPR012424
Family
Homologues of TraJ from Bacteroides conjugative transposon
PF07863\"[10-84]TCtnDOT_TraJ
noIPR
unintegrated
unintegrated
signalp\"[1-26]?signal-peptide
tmhmm\"[10-30]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Mar 1 10:39:57 MST 2001","Thu Mar 1 10:39:57 MST 2001","Thu Mar 1 10:37:47 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","PG1198 is similar to PG0455, a hypothetical protein. Residues 1-88 are 84% similar to PG0455. Similarities are also seen to PG1105.2, PG1941.1, PG0941.1, PG1563, PG0787.1, all hypothetical proteins, and PG1293, TraJ-related protein.","Mon Jun 4 13:20:10 MDT 2001","Thu Mar 1 10:37:47 MST 2001","-44% similar to PDB:1BMF BOVINE MITOCHONDRIAL F1-ATPASE (E_value = );-44% similar to PDB:1COW BOVINE MITOCHONDRIAL F1-ATPASE COMPLEXED WITH AUROVERTIN B (E_value = );-44% similar to PDB:1E1Q BOVINE MITOCHONDRIAL F1-ATPASE AT 100K (E_value = );-44% similar to PDB:1E1R BOVINE MITOCHONDRIAL F1-ATPASE INHIBITED BY MG2+ADP AND ALUMINIUM FLUORIDE (E_value = );-44% similar to PDB:1E79 BOVINE F1-ATPASE INHIBITED BY DCCD (DICYCLOHEXYLCARBODIIMIDE) (E_value = );","","","No significant hits to the Pfam 11.0 database","Mon Jun 4 13:20:10 MDT 2001","34541049","","","","","","1","","","PG1363" "PG1199","1445638","1444484","1155","ATGAAGAAAAACATAGCCATCCTTGGCTCGACCGGATCCATCGGTACACAGACACTCGATATTATCCATCTGAATCCGGATCTTTTCGATGTCTACCTCCTTACGGCAAACAATAATGTAGACCTTTTGATCCGACAGGCACGCGAATATCGGCCGGAAATAGTCGTAATAGCCAACGACCAAAAATACCATCTTATACAAGAGGCTTTGGCCGATTTGCCTATCAAGGTATGGTGTGGAGCCGAGGCTATTGCCGATGCGGTAACGGCTCCGGATATCGATATGGTCGTGACGGCCATGGTAGGCTATTCGGGGTTGTTGCCTACGATCAAAGCCATCGAAGCCCGAAAGATGATAGCACTTGCAAACAAAGAAACTCTCGTTGTGGCAGGCGAACTCATCATGCGATTGGCGCAAGACAATCAGGTACCTATCCTTCCGGTCGATTCGGAGCATTCGGCTATTTTTCAGGCTCTTTTAGGAGAGAGACAGCGGCCGGAGAAGATCCTGCTGACGGCTTCGGGAGGCCCTTTTCTGCATCTGACAGCAGAGGAATTGCAGCATGCTACCCGTGAACAGGCTCTCCGCCATCCTAATTGGAATATGGGGGCAAAGGTGACTATCGATTCTGCTTCGCTCATGAACAAGGGGTTTGAGATGATCGAAGCCAAATGGTTGTTTGAGATGCAACCCGATGAGATCGAAATACTCGTGCACCCACAAAGCATAATACACTCCATGGTGCAGTTCCGCGATGGTTCGGTCAAGGCTCAACTTGGTATTCCCGATATGCGTTTGCCTATCAGTTATGCCCTTGGCATTACCCACCGCATCCCGAACGATTATCCTCGGGTGGATTTCACGGCTACCCCCCTGACCTTCGAACGCCCTGATCTCGAACGATTCCCCAATCTCTCTTACGCTTTTGATGCGATTCGTTTGGGTGGTAATGCACCTTGTGCACTCAACGCTGCCAATGAGATTGCCGTGACTGCTTTCCTGCGCGATGAAATTTCTTTTACGGATATGAGCCGTCTGTTGTATGAAGTGATGGAAAAGCACGAATTGTTCCGAGAAGTATCTTTACCCACTTTCATCGAGACGGACAGCAACACACGCCGAGTGGCCGAATCCCTTCTGCCCAAATTTCGTCGG","5.20","-10.66","43092","MKKNIAILGSTGSIGTQTLDIIHLNPDLFDVYLLTANNNVDLLIRQAREYRPEIVVIANDQKYHLIQEALADLPIKVWCGAEAIADAVTAPDIDMVVTAMVGYSGLLPTIKAIEARKMIALANKETLVVAGELIMRLAQDNQVPILPVDSEHSAIFQALLGERQRPEKILLTASGGPFLHLTAEELQHATREQALRHPNWNMGAKVTIDSASLMNKGFEMIEAKWLFEMQPDEIEILVHPQSIIHSMVQFRDGSVKAQLGIPDMRLPISYALGITHRIPNDYPRVDFTATPLTFERPDLERFPNLSYAFDAIRLGGNAPCALNAANEIAVTAFLRDEISFTDMSRLLYEVMEKHELFREVSLPTFIETDSNTRRVAESLLPKFRR","1445638 1444484","This enzyme forms part of an alternative nonmevalonate pathway for terpenoid biosynthesis.TIGR ID: PG1364","1-deoxy-d-xylulose-5-phosphate reductoisomerase (DXP reductoisomerase) (1-deoxyxylulose 5-phosphate reductoisomerase)","Cytoplasm","Numerous significant hits to 1-deoxy-d-xylulose-5-phosphate reductoisomerase (DXP reductoisomerase) (1-deoxyxylulose 5-phosphate reductoisomerase) in gapped BLAST; e.g. residues 3-378 are 46% similar to emb|CAB65435.1| deoxyxylulose 5-phosphate reductoisomerase of Synechococcus leopoliensis, residues 3-379 are 46% similar to emb|CAB43344.1| 1-deoxy-d-xylulose-5-phosphate reductoisomerase of Arabidopsis thaliana, residues 2-380 are 41% similar to sp|O31753|DXR_BACSU 1-deoxy-d-xylulose-5-phosphate reductoisomerase (DXP reductoisomerase) (1-deoxyxylulose 5-phosphate reductoisomerase) of Bacillus subtilis.This sequence is similar to BT2002.","
InterPro
IPR003821
Family
1-deoxy-D-xylulose 5-phosphate reductoisomerase
PIRSF006205\"[2-385]TDxp_reductismrs
TIGR00243\"[1-384]TDxr
InterPro
IPR013512
Domain
1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal
PF02670\"[5-131]TDXP_reductoisom
InterPro
IPR013644
Domain
1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal
PF08436\"[145-227]TDXP_redisom_C
noIPR
unintegrated
unintegrated
SSF51735\"[1-149]TSSF51735
SSF55347\"[125-262]TSSF55347
SSF69055\"[288-385]TSSF69055


","BeTs to 9 clades of COG0743COG name: 1-deoxy-D-xylulose 5-phosphate reductoisomerase (terpenoid biosynthesis)Functional Class: IThe phylogenetic pattern of COG0743 is -----qvcebrhuj---lin-Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 76-354 are 50% similar to a (1-DEOXY-D-XYLULOSE 5-PHOSPHATE) protein domain (PD010039) which is seen in DXR_BACSU.Residues 3-62 are 60% similar to a (1-DEOXY-D-XYLULOSE 5-PHOSPHATE) protein domain (PD186282) which is seen in DXR_SYNY3.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Tue Apr 22 13:20:09 2003","Thu Mar 1 11:08:31 MST 2001","Tue Dec 9 17:13:00 2003","Tue Apr 22 13:20:09 2003","","Thu Mar 1 11:08:31 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 11:08:31 MST 2001","-61% similar to PDB:1JVS Crystal structure of 1-deoxy-D-xylulose 5-phosphate reductoisomerase; a target enzyme for antimalarial drugs (E_value = 1.1E_85);-61% similar to PDB:1K5H 1-deoxy-D-xylulose-5-phosphate reductoisomerase (E_value = 1.1E_85);-61% similar to PDB:1ONN IspC apo structure (E_value = 1.1E_85);-61% similar to PDB:1ONO IspC Mn2+ complex (E_value = 1.1E_85);-61% similar to PDB:1ONP IspC complex with Mn2+ and fosmidomycin (E_value = 1.1E_85);","","","Residues 5 to 376 (E-value = 5.6e-181) place PG1199 in the DXP_reductoisom family which is described as 1-deoxy-D-xylulose 5-phosphate reductoisomerase (PF02670)","Tue May 8 14:34:58 MDT 2001","34541050","","","Miller,B., Heuser,T. and Zimmer,W. 2000. Functional involvement of a deoxy-D-xylulose 5-phosphate reductoisomerase gene harboring locus of Synechococcus leopoliensis in isoprenoid biosynthesis. FEBS Lett. 481 (3): 221-226. Pubmed: 11007968.Schwender,J., Muller,C., Zeidler,J. and Lichtenthaler,H.K. 1999. Cloning and heterologous expression of a cDNA encoding1-deoxy-D-xylulose-5-phosphate reductoisomerase of Arabidopsisthaliana. FEBS Lett. 455 (1-2): 140-144. PubMed: 10428488. ","","Thu Mar 1 11:08:31 MST 2001","1","","","PG1364" "PG1200","1446162","1445638","525","ATGATCGATTTGGATTCATTGGAGCATATCGGTGTGCTGGGTAAGCCGCATGGCGTTCAGGGAGAGTGCAACGCTCGTCTGACAGCCGATTTGAGTACGCTCTTTGAGGAAGAAGAGCGGTTGTTTCTCTTTTTCGAGCTGGATGCATTGCCGGTTCCGTTCCGTCTTATTGGCTACCGTGAGAAAACCGATGATATTACTTTGCTCCGCTTTGCCGGTATTGAAAGCAAGGAGGAGATGGAGCAGTACACCGGTGTGTCTCTCTTTATGGAACGACGATACTTCGATACTGATTCTATCGAATTCACCTGGGAACATTTCATCGGCTTTACGGTATTCGACCGAGAAGGTTGTTTCGTAGGGACAATCGATGATGTGGACGAGAGTACGCTCAATGTCCTTTTGTCTATAACTACGCCCGAAGGAAAAGAACTCCTTTTACCCGTAGCTGAGGATTTGCTGGAAGAGATAGATGTGCCAAATCGGAAACTAACGATGATTATTCCCGACGGCCTACTGCAATTA","4.10","-22.35","20009","MIDLDSLEHIGVLGKPHGVQGECNARLTADLSTLFEEEERLFLFFELDALPVPFRLIGYREKTDDITLLRFAGIESKEEMEQYTGVSLFMERRYFDTDSIEFTWEHFIGFTVFDREGCFVGTIDDVDESTLNVLLSITTPEGKELLLPVAEDLLEEIDVPNRKLTMIIPDGLLQL","1446162 1445638","TIGR ID: PG1365","hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR007903
Domain
PRC-barrel
PF05239\"[99-173]TPRC
InterPro
IPR011033
Domain
PRC-barrel-like
SSF50346\"[85-167]TPRCH_cytoplasmic
InterPro
IPR011961
Family
16S rRNA processing protein RimM
TIGR02273\"[7-172]T16S_RimM


","BeTs to 5 clades of COG0806COG name: RimM protein, required for 16S rRNA processingFunctional Class: JThe phylogenetic pattern of COG0806 is -----qvcebrhuj--ol--xNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Mar 1 11:11:15 MST 2001","","Thu Mar 1 11:11:15 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 11:11:15 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 9 to 94 (E-value = 8.8e-05) place PG1200 in the RimM family which is described as RimM N-terminal domain (PF01782)Residues 99 to 173 (E-value = 5.8e-05) place PG1200 in the PRC family which is described as PRC-barrel domain (PF05239)","Thu Mar 1 11:11:15 MST 2001","34541051","","","","","","1","","","PG1365" "PG1201","1447473","1446172","1302","ATGGCATCTTACGTAATAGAAGGGGGCAACAGTCTCAAGGGTGAGATTCTCGTCCAGGGTGCAAAAAACGAAGCTTTGCAGATCATCTCTGCTACGCTATTGACCGATCAGGAGGTTGTGGTGCGTAACATCCCCGATATATTGGATGTGAACAACCTGATCGACCTGCTTCGAAACATGGGGGTTAAGGTAAAAAGACCCACCCGCGATACTTGTGTTTTCCAAGCTGATAATGTGAATCTCGACTATATCAAAAGCGAGCAGTTTCTCGAAAAGAGTCGCGCCTTGCGCGGTTCGGTCTTGCTTGTTGGGCCACTGATCAGTCGCTTCGGTTACGCCATTTTCCCGAAACCAGGGGGAGATAAGATCGGCCGCCGCAGGTTAGATACTCATCTTGTAGGTATTCAGGCATTAGGTGCCACGTGCGACTACCATTCCGATATGCAAGCCTATGAATTGACTGCAAGCCGGCTTTCCGGCACTTATATGCTGCTGGACGAAGCTTCTGTGACGGGTACTGCCAATATCCTAATGGCAGCTGTCCTTGCTGATGGTATTACCACTATTTATAATGCTGCCTGTGAGCCATATCTGCAGCAACTTTGCAAGATGCTGCTTAGTATGGGGGCGCATATAGAGGGTGTCGGCTCTAATCTGCTTCGTATCGAAGGAGTACAGAGCTTACATGGCTGTGAGCATAAGATGTTGCCCGATATGATCGAAGTGGGTAGCTTCATCGGAATGGCTGCGATGACCGCTTCCGAGCTTTTGATCAAGGATGTCAGCGTGCCTGATCTGGGTATCATCCCTGCATCTTTCCGCCGTTTGGGAATTGCTGTGGAGCAGCAAGGCGACGATCTGTTTATTCCTAAGCAGGAACATTATGAGATAGAGACGTTTATGGACGGATCCATCATGACTATTGCAGATGCTCCTTGGCCGGGTCTTACTCCGGACTTGCTCAGCGTCTTTCTCGTGGTGGCAACTCAGGCGAAAGGCAGTGTACTGATTCACCAGAAGATGTTTGAAAGCCGTCTCTTCTTTGTCGATAAGCTAATCGATATGGGAGCACAGATTATCCTTTGCGACCCCCATCGTGCTACGATCATCGGTTTGGACAAACGTGTTCCCTTGCGAGCTGCAACTATGGTTTCACCCGATATTCGTGCCGGTATAGCCCTCCTTATTGCAGCTATGAGTGCAGAAGGAACAAGTATCATCCACAACGTAGAACAGATCGATAGGGGTTACCAATCCATAGATACTCGCCTCAACGCTATCGGCGCACGTATCTCTCGCCTT","5.50","-8.09","47237","MASYVIEGGNSLKGEILVQGAKNEALQIISATLLTDQEVVVRNIPDILDVNNLIDLLRNMGVKVKRPTRDTCVFQADNVNLDYIKSEQFLEKSRALRGSVLLVGPLISRFGYAIFPKPGGDKIGRRRLDTHLVGIQALGATCDYHSDMQAYELTASRLSGTYMLLDEASVTGTANILMAAVLADGITTIYNAACEPYLQQLCKMLLSMGAHIEGVGSNLLRIEGVQSLHGCEHKMLPDMIEVGSFIGMAAMTASELLIKDVSVPDLGIIPASFRRLGIAVEQQGDDLFIPKQEHYEIETFMDGSIMTIADAPWPGLTPDLLSVFLVVATQAKGSVLIHQKMFESRLFFVDKLIDMGAQIILCDPHRATIIGLDKRVPLRAATMVSPDIRAGIALLIAAMSAEGTSIIHNVEQIDRGYQSIDTRLNAIGARISRL","1447473 1446172","TIGR ID: PG1366","UDP-N-acetylglucosamine-1-carboxyvinyltransferase (enoylpyruvate transferase) (UDP-N-acetylglucosamine enolpyruvyl transferase) (EPT)","Cytoplasm","Numerous significant hits to UDP-N-acetylglucosamine 1-carboxyvinyltransferase (enoylpyruvate transferase) (UDP-N-acetylglucosamine enolpyruvyl transferase) (EPT) in gapped BLAST; e.g. residues 1-431 are 44% similar to gb|AAC65025.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase of Treponema pallidum, residues 1-434 are 43% similar to sp|O51428|MURA_BORBU UDP-N-acetylglucosamine 1-carboxyvinyltransferase (enoylpyruvate transferase) (UDP-N-acetylglucosamine enolpyruvyl transferase) (EPT) of Borrelia burgdorferi, residues 1-434 are 32% similar to gb|AAF84224.1|AE003972_9 UDP-N-acetylglucosamine 1-carboxyvinyltransferase of Xylella fastidiosa.This sequence is similar to BT2005.","
InterPro
IPR001986
Domain
3-phosphoshikimate 1-carboxyvinyltransferase
PD001867\"[12-429]TEPSP_synth
G3DSA:3.65.10.10\"[21-235]TEPSP_synthase
PF00275\"[6-424]TEPSP_synthase
InterPro
IPR005750
Family
UDP-N-acetylglucosamine 1-carboxyvinyltransferase
PTHR21090:SF4\"[91-434]TAcGlu_Tran_MurA
TIGR01072\"[1-433]TmurA
InterPro
IPR013792
Domain
RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta
SSF55205\"[1-434]TRNA3'_cycl/enolpyr_transf_A/B
noIPR
unintegrated
unintegrated
PTHR21090\"[91-434]TPTHR21090


","BeTs to 11 clades of COG0766COG name: UDP-N-acetylglucosamine enolpyruvyl transferaseFunctional Class: MThe phylogenetic pattern of COG0766 is -----qvceBrhuj--olinxNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 12-409 are 43% similar to a (TRANSFERASE SYNTHASE 1-CARBOXYVINYLTRANSFERASE EPSP) protein domain (PD001867) which is seen in O54312_TREPA.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Mar 15 12:59:28 MST 2001","Tue Dec 9 17:14:36 2003","Tue Jan 7 14:36:01 2003","","Thu Mar 1 11:24:39 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 11:24:39 MST 2001","-54% similar to PDB:1DLG CRYSTAL STRUCTURE OF THE C115S ENTEROBACTER CLOACAE MURA IN THE UN-LIGANDED STATE (E_value = 4.9E_56);-54% similar to PDB:1RYW C115S MurA liganded with reaction products (E_value = 4.9E_56);-54% similar to PDB:1EJC CRYSTAL STRUCTURE OF UNLIGANDED MURA (TYPE2) (E_value = 1.1E_55);-54% similar to PDB:1EJD CRYSTAL STRUCTURE OF UNLIGANDED MURA (TYPE1) (E_value = 1.1E_55);-54% similar to PDB:1EYN STRUCTURE OF MURA LIGANDED WITH THE EXTRINSIC FLUORESCENCE PROBE ANS (E_value = 1.1E_55);","","","Residues 8 to 424 (E-value = 3.6e-47) place PG1201 in the EPSP_synthase family which is described as EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) (PF00275)","Tue May 22 15:23:17 MDT 2001","34541052","","","","","","1","","","PG1366" "PG1202","1448106","1447507","600","ATGAATTATAATAGTAAAATGGAACCTTTGGCTATTCCGGAATATGGCAGGAATATCCAAAACATGGTAAATTATTGCATGACAATCGGTGATCGTGACGAACGGAATCGCTGTGCACAAACGATCATTACAATCATGGGAAACATGTTTCCCGAACGGCGGGAAAACAGTGAGACCAAGCATATTCTTTGGGATCATCTGGCTATTATGTCCGGATTCAAGTTGGATATCGATTATCCGATGGAGATCATCAGTCCGGAGCTGCTCGAACGGAAGCCTAAAGCTGTAAGCTACTCGGCCAACGACATCGTATATCGGCACTACGGCCATCTCATACAGGAAATGATCCTCAAGGCTTGTGCCATGGAGCAGGGAGAAGAGCGTTATGCGCTGGAGCTGCTCATCGCCAACCAGATGAAGCGTTCGTATCTGACATGGAACAAAGATACGGTGGATGACTACAAGATATTCAAGGATTTGTACGAACTGTCCGAAGGGCGCATAGAGCTGACGGAGGAGAGTTGTCATCTGACGATACCGAATGCTTCGGATCGGAAGGACAATAACAACACCAAACGGAACAAGGTATTCCGGCGGAAA","6.70","-0.98","23652","MNYNSKMEPLAIPEYGRNIQNMVNYCMTIGDRDERNRCAQTIITIMGNMFPERRENSETKHILWDHLAIMSGFKLDIDYPMEIISPELLERKPKAVSYSANDIVYRHYGHLIQEMILKACAMEQGEERYALELLIANQMKRSYLTWNKDTVDDYKIFKDLYELSEGRIELTEESCHLTIPNASDRKDNNNTKRNKVFRRK","1448106 1447507","TIGR ID: PG1367","conserved hypothetical protein","Cytoplasm","This sequence corresponds to gi:34397368 in Genbank.Its nearest neighbor in the NR database is gi:29347416 from Bacteroides thetaiotaomicron VPI-5482.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Fri Sep 10 15:17:41 2004","Mon Mar 7 14:04:17 2005","Thu Mar 1 12:41:13 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 12:41:13 MST 2001","-48% similar to PDB:1IQV Crystal Structure Analysis of the archaebacterial ribosomal protein S7 (E_value = );-55% similar to PDB:2GVG Crystal Structure of human NMPRTase and its complex with NMN (E_value = );-55% similar to PDB:2GVJ Crystal Structure of Human NMPRTase in complex with FK866 (E_value = );-55% similar to PDB:2G95 Crystal Structure of Visfatin/Pre-B Cell Colony Enhancing Factor 1/Nicotinamide Phosphoribosyltransferase (E_value = );-55% similar to PDB:2G96 Crystal Structure of Visfatin/Pre-B Cell Colony Enhancing Factor 1/Nicotinamide Phosphoribosyltransferase In Complex with Niconamide Mononucleotide (E_value = );","","","No significant hits to the Pfam 11.0 database","Thu Mar 1 12:41:13 MST 2001","34541053","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Mon Mar 7 14:04:17 2005","","1","","","PG1367" "PG1203","1449463","1448129","1335","ATGGAAAGAATCCGATTGGATCTGTCTAAAACAGGTTCTTCTGTGGCTTCTTATGGAGAGACAGCGGAGAAGTTCAATGCCTTGCTGGATAACGGTACCGGTCGAGGGAGCGATTTTCTCGGTTGGGTCCATTTGCCATCTTCCATCACGGAAGAGGAATTGAACGCGGTAGAAGCTGCAGCTACTATCCTCAGAGAACGTTGCGACTATGTAATAAACGTAGGTATCGGGGGCAGTTACCTCGGAGCAAGGGCTGTGATCGAAGCATTGCAAAACAGTTTCGAGGCATATCGCTCGGACAGGGAGAACCCTGTTATACTATATGCCGGCAATAATATCGGTGAGGATTATCTTTCCGAACTGCTACAGTTCCTGCGTGATAAGAGATTTGGTATCATTTATATTTCCAAAAGCGGAACGACTACCGAACCGGCTATTGCCTTTCGTCTGTTGAAAGGATTGCTGGAATCGCAGGTCGGACGTGAAGATGCTCGGGAGAGGATTGTGGCCGTTACCGATTCGGCCAAAGGTGCTTTAAGACGTATGGCTGATGAAGAGGGCTATCGTTCTTTCGTCATACCGGACAATGTGGGAGGACGTTTTTCCGTCCTCACTCCTGTGGGGTTGCTCCCTGTGGCAGTAGCCGGCTTCGATATTCGTCAGTTGGTACGAGGTGCAGCCGATATGCAAGCCATGACGGCTTCAGACATTCCTTTTTCGGACAATCCGGCTTTACGATACGCGGCAGCTCGCAATGCTTTGTATGCCGAAGGAAAGAAGATAGAGATACTGGCCAATTTCCATCCCAAAATGCACTATATCGGAGAGTGGTGGAAGCAGCTTTTCGGTGAGAGCGAGGGCAAAGAGGAGAAGGGGATCTTCACGGCAACTGTGGATCTGACTACCGACCTCCATTCCATGGGACAATGGATGCAGGAGGGCGAACGTACGATATTCGAGACAGTGATTTCCGTAGAAAATCAAGATACATGCTTGACGATTCCTTCCGACTCGGCGGATTTGGATGGGCTTAACTTTCTGGCCGGAAAGCGTGTAGACGAAGTAAATAAGATGGCTGAATTGGGTACCCGGCTGGCTCATGTAGATGGGGGAGTACCTAATATACGCATCATTTTGCCGCAATTGGATGCTTATTATATAGGGCAGTTGTTCTATTTCTTTGAGAAAGCGGTAGGCGTCAGTGGCTATATGCTGGGTGTGAATCCTTTCGATCAACCGGGGGTCGAAGGTTATAAGAACAATATGTTTGCTTTGCTGAACAAGCCCGGCTATGAAACAGAATCAGCAGCAATGGCAGGCCGACTGAAAGAGTGT","4.80","-15.89","48956","MERIRLDLSKTGSSVASYGETAEKFNALLDNGTGRGSDFLGWVHLPSSITEEELNAVEAAATILRERCDYVINVGIGGSYLGARAVIEALQNSFEAYRSDRENPVILYAGNNIGEDYLSELLQFLRDKRFGIIYISKSGTTTEPAIAFRLLKGLLESQVGREDARERIVAVTDSAKGALRRMADEEGYRSFVIPDNVGGRFSVLTPVGLLPVAVAGFDIRQLVRGAADMQAMTASDIPFSDNPALRYAAARNALYAEGKKIEILANFHPKMHYIGEWWKQLFGESEGKEEKGIFTATVDLTTDLHSMGQWMQEGERTIFETVISVENQDTCLTIPSDSADLDGLNFLAGKRVDEVNKMAELGTRLAHVDGGVPNIRIILPQLDAYYIGQLFYFFEKAVGVSGYMLGVNPFDQPGVEGYKNNMFALLNKPGYETESAAMAGRLKEC","1449622 1448129 [Bad Olap 1547 124 0]","From Prosite PDOC00157:Phosphoglucose isomerase is a dimeric enzyme that catalyzes the reversible isomerization of glucose-6-phosphate and fructose-6-phosphate.TIGR ID: PG1368","glucose-6-phosphate isomerase","Cytoplasm","Significant hits with gapped BLAST to glucose-6-phosphate isomerases; e.g. residues 28-444 are 55% similar to glucose-6-phosphate isomerase (X16640) of Bacillus stearothermophilus, residues 71-426 are 35% similar to glucose-6-phosphate isomerase (P47357) of Mycoplasma genitalium, residues 69-434 are 36% similar to glucose-6-phosphate isomerase (AE001791) of Thermotoga maritima. This sequence is similar to BT2124.","
InterPro
IPR001672
Family
Phosphoglucose isomerase (PGI)
PR00662\"[71-90]T\"[191-209]T\"[267-288]T\"[370-388]T\"[388-402]T\"[402-415]TG6PISOMERASE
PTHR11469\"[34-434]TG6P_Isomerase
PF00342\"[36-439]TPGI
PS00174\"[402-419]TP_GLUCOSE_ISOMERASE_2
PS00765\"[195-208]TP_GLUCOSE_ISOMERASE_1
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.10490\"[183-411]TG3DSA:3.40.50.10490
SSF53697\"[1-442]TSSF53697


","BeTs to 12 clades of COG0166COG name: Glucose-6-phosphate isomeraseFunctional Class: GThe phylogenetic pattern of COG0166 is -m--yqvcebrhujgpolin-Number of proteins in this genome belonging to this COG is 1","***** IPB001672 (Phosphoglucose isomerase) with a combined E-value of 2.8e-20. IPB001672B 49-91 IPB001672C 112-154 IPB001672D 169-204 IPB001672H 387-422","Residues 36-432 are 54% similar to a (ISOMERASE GLUCOSE-6-PHOSPHATE PHOSPHOGLUCOSE) protein domain (PD001107) which is seen in G6PB_BACST.","","Thu Jun 14 11:37:01 MDT 2001","","Thu Jun 14 11:37:01 MDT 2001","Thu Jun 14 11:37:01 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:37:01 MDT 2001","Thu Jun 14 11:37:01 MDT 2001","","Mon Jun 25 10:41:14 MDT 2001","Wed Mar 22 10:55:05 MST 2000","Wed Dec 10 14:48:33 2003","Wed Feb 21 15:29:01 MST 2001","Mon Jun 25 10:41:14 MDT 2001","Mon Jun 25 10:41:14 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Tue Apr 18 08:57:24 MDT 2000","Thu Mar 15 13:07:49 MST 2001","-69% similar to PDB:1B0Z The crystal structure of phosphoglucose isomerase-an enzyme with autocrine motility factor activity in tumor cells (E_value = 1.3E_123);-69% similar to PDB:1C7Q THE CRYSTAL STRUCTURE OF PHOSPHOGLUCOSE ISOMERASE/AUTOCRINE MOTILITY FACTOR/NEUROLEUKIN COMPLEXED WITH ITS CARBOHYDRATE PHOSPHATE INHIBITORS AND ITS SUBSTRATE RECOGNITION MECHANISM (E_value = 1.3E_123);-69% similar to PDB:1C7R THE CRYSTAL STRUCTURE OF PHOSPHOGLUCOSE ISOMERASE/AUTOCRINE MOTILITY FACTOR/NEUROLEUKIN COMPLEXED WITH ITS CARBOHYDRATE PHOSPHATE INHIBITORS AND ITS SUBSTRATE RECOGNITION MECHANISM (E_value = 1.3E_123);-69% similar to PDB:2PGI THE CRYSTAL STRUCTURE OF PHOSPHOGLUCOSE ISOMERASE-AN ENZYME WITH AUTOCRINE MOTILITY FACTOR ACTIVITY IN TUMOR CELLS (E_value = 1.3E_123);-45% similar to PDB:1ZZG Crystal structure of hypothetical protein TT0462 from Thermus thermophilus HB8 (E_value = 9.6E_31);","","","Residues 7 to 439 (E-value = 2e-112) place PG1203 in the PGI family which is described as Phosphoglucose isomerase (PF00342)","Mon Jun 25 10:41:14 MDT 2001","34541054","","","","","","1","","","PG1368" "PG1204","1450500","1449499","1002","ATGGGGGGAATCGGGAGAATAGGAATATTGGGTAGTGGCAGTTGGGCTACGGCTCTGGCCAAAATCATATTGACCTCTCAACCATCCATCAATTGGTTTATGCGCCGCGAAGAGCAGGCGCAGGGCATTAAGCGTACGGGGCGCAATCCTAACTATCTGCGCGATGCCGTATTCGATCCTCGGAAAATCTCATTTTTCACCGATTCGGATCTGAACAGTTTTTTCAGAGCCAGCGATGTGGTGGTTCTTGTCACTCCTTCGCCTTTCATCAAATCCTATCTGAAACGCGTTCGCTCGTCCAGCATGCGCGACAAGCTGATTATCAATGCTATCAAGGGGATCGTGCCGGATGAGAATGTCTTGGTATCGGAATATCTGCACGATTTCTGCGATGTCCCCAACGAACTGATAGGTGTAGTCTCCGGTCCTTGCCATGCAGAGGAGGTGGCCAGAGAGCGCAGATCATATCTGACGGTGGGCTGCTTCGATATCAATAAGGCAAAAGCCATGGCAAACGTACTACGCAACGATTATGTGAGCTGTACGACCAGTCAGGACGTAGTAGGCATCGAATATGCCTCGGTGCTGAAGAATGTTTATGCCATTGCTGCCGGAATATGCAACGGTCTGCAGTATGGCGACAACTTTCAGTCTGTCTTGATGTCGAATGCCATTGCTGAAATGAATAGTTTCGTCAATACCGTCCACCTCTTGGAAAGAGAGATCACGGATTCGGTATATTTGGGCGACCTCCTTGTGACAGCTTATTCGAACTACAGCCGCAATCGTACTTTCGGCAATATGATAGGAAAGGGATACAGTGTCAAATCCGCTCAAATGGAGATGGAGATGATAGCAGAGGGCTACTATGGAGCCAAGTGTGTAAGGGAGGTAAACAAACGCTATCAGGTCAATATGCCGATCATGAATACGGTGTACGAGGTACTGTACGAGAAGCGAGATGCGGCCGAAGCCATTACTGCTTTGACGGCACATTTCAAA","8.00","2.69","37275","MGGIGRIGILGSGSWATALAKIILTSQPSINWFMRREEQAQGIKRTGRNPNYLRDAVFDPRKISFFTDSDLNSFFRASDVVVLVTPSPFIKSYLKRVRSSSMRDKLIINAIKGIVPDENVLVSEYLHDFCDVPNELIGVVSGPCHAEEVARERRSYLTVGCFDINKAKAMANVLRNDYVSCTTSQDVVGIEYASVLKNVYAIAAGICNGLQYGDNFQSVLMSNAIAEMNSFVNTVHLLEREITDSVYLGDLLVTAYSNYSRNRTFGNMIGKGYSVKSAQMEMEMIAEGYYGAKCVREVNKRYQVNMPIMNTVYEVLYEKRDAAEAITALTAHFK","1450500 1449499 [Shorter 1546 124 99]","TIGR ID: PG1369","NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (NAD(P)H-dependent dihydroxyacetone-phosphate reductase)","Cytoplasm, Outer membrane","Numerous significant hits to glycerol-3-phosphate dehydrogenase (dihydroxyacetone-phosphate reductase) in gapped BLAST; e.g. residues 15-334 are 28% similar to gb|AAA86746.1| NAD(P)H-dependent dihydroxyacetone-phosphate reductase of Bacillus subtilis, residues 15-334 are 28% similar to dbj|BAB05359.1| NAD(P)H-dependent glycerol-3-phosphate dehydrogenase of Bacillus halodurans, residues 15-326 are 30% similar to gb|AAK05436.1|AE006366_5 glycerol-3-phosphate dehydrogenase of Lactococcus lactis subsp. lactis.This sequence is similar to BT2123.","
InterPro
IPR006109
Domain
NAD-dependent glycerol-3-phosphate dehydrogenase, C-terminal
PD001278\"[213-318]TNAD_Gly3P_C
PF07479\"[185-329]TNAD_Gly3P_dh_C
InterPro
IPR006168
Family
NAD-dependent glycerol-3-phosphate dehydrogenase
PR00077\"[9-26]T\"[62-89]T\"[139-159]T\"[179-203]T\"[204-228]T\"[244-261]TGPDHDRGNASE
PTHR11728\"[6-332]TNAD_Gly3P_DH
PS00957\"[194-215]?NAD_G3PDH
InterPro
IPR008927
Domain
6-phosphogluconate dehydrogenase, C-terminal-like
SSF48179\"[185-332]T6DGDH_C_like
InterPro
IPR011128
Domain
NAD-dependent glycerol-3-phosphate dehydrogenase, N-terminal
PF01210\"[5-168]TNAD_Gly3P_dh_N
InterPro
IPR013328
Domain
Dehydrogenase, multihelical
G3DSA:1.10.1040.10\"[195-332]TOpine_DH
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.720\"[6-193]TG3DSA:3.40.50.720
PIRSF000114\"[5-333]TGlycerol-3-P_dh
SSF51735\"[1-186]TSSF51735


","BeTs to 14 clades of COG0240COG name: Glycerol 3-phosphate dehydrogenaseFunctional Class: CThe phylogenetic pattern of COG0240 is a-t-YqvcebRhuj--olinxNumber of proteins in this genome belonging to this COG is 1","***** IPB001652 (NAD-dependent glycerol-3-phosphate dehydrogenase) with a combined E-value of 9.8e-38. IPB001652A 7-26 IPB001652C 135-158 IPB001652D 190-228 IPB001652E 241-262 IPB001652F 270-315","Residues 15-329 are 28% similar to a (DEHYDROGENASE GLYCEROL-3-PHOSPHATE) protein domain (PD001649) which is seen in GPDA_BACSU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Fri Mar 23 15:04:42 MST 2001","Wed Dec 10 14:46:52 2003","Thu Mar 1 12:56:01 MST 2001","Thu Mar 1 12:56:01 MST 2001","Thu Mar 1 12:56:01 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 12:56:01 MST 2001","-50% similar to PDB:1Z82 Crystal structure of glycerol-3-phosphate dehydrogenase (TM0378) from THERMOTOGA MARITIMA at 2.00 A resolution (E_value = 2.5E_33);-49% similar to PDB:1EVY CRYSTAL STRUCTURE OF LEISHMANIA MEXICANA GLYCEROL-3-PHOSPHATE DEHYDROGENASE (E_value = 8.2E_29);-49% similar to PDB:1EVZ CRYSTAL STRUCTURE OF LEISHMANIA MEXICANA GLYCEROL-3-PHOSPHATE DEHYDROGENASE IN COMPLEX WITH NAD (E_value = 8.2E_29);-49% similar to PDB:1JDJ CRYSTAL STRUCTURE OF LEISHMANIA MEXICANA GLYCEROL-3-PHOSPHATE DEHYDROGENASE IN COMPLEX WITH 2-FLUORO-6-CHLOROPURINE (E_value = 8.2E_29);-49% similar to PDB:1M66 Crystal Structure of Leishmania mexicana GPDH Complexed with Inhibitor 2-bromo-6-chloro-purine (E_value = 8.2E_29);","","","Residues 6 to 329 (E-value = 4e-76) place PG1204 in the NAD_Gly3P_dh family which is described as NAD-dependent glycerol-3-phosphate dehydrogenase (PF01210)","Fri Mar 23 15:04:42 MST 2001","34541055","","","","","","1","","","PG1369" "PG1205","1452322","1450589","1734","ATGAACATACTCGAACTTTCGGAACAAGAAGTCGTACGCCGTAACAGCTTAGAGCAACTGCGTAATTTGGGGATCGATCCATATCCTGCAGCGGAATATACCGTCAATGCCTATTCCGCCGAGATCAAAAGGAATTTCAATGGCGATGAGAATGTCGCCAAACGTCAAGTAAGCATTGCCGGACGTATTATGAGCCGCCGTATCATGGGGAAAGCTACATTCATGGAGCTGCAAGATGCTGAGGGGCGTATCCAGATCTATATTACTCGGGACGATATTTGTCCGGGTGAGGATAAGGAGTTCTACAATACGGTGGTCAAGAAGTGTACGGATATAGGTGATTTTATCGGAGTGAAAGGGTACGTATTCCGCACTCAGATGGGAGAAATATCGGTGCATGTGCAGGAGATGACTTTCTTGTCGAAAGCTATCCGCCCCCTTCCTGTGGTAAAAGAAAAAGATGGGGAGGTCTTCGATGGCTTCACGGATCCGGAGCAGCGTTATCGTCAGCGATACGTGGATCTGGTCGTCAATAGTCATGTCAAAGACATTTTCCTCAAGCGTACGATGGTATTCAATTCGATGCGCAGTTTCTTCAATGAGTGCGGATACATCGAAGTGGATACACCTGTACTCCAATCGATCCCGGGAGGTGCAGCTGCGCGTCCTTTTATCACGCATCATAACGCTCTGGACATTCCGCTCTATCTGAGAATCGCTAACGAATTGTATCTGAAGCGTCTGATCGTGGGCGGTTTCGATGGTGTGTATGAATTCAGCCGCAATTTCCGAAATGAGGGGATGGACCGCACGCATAATCCTGAGTTCACGGCCATGGAGATCTATGTGGCGTATAAGGATTACAACTGGATGATGAACTTTACGGAGCAGATGCTCGAACGCATCTGTATGGATGTGCTGGGTACTACTCAGATGAAGGTGGGCGGGAAATTGATCGACTTCAAGGCCCCCTACAAGCGAGTGACCATGATCGAAGCCATCCATGAGCATACGGGTATCGACATCAGCGGAATGAACGAGGCCGAGCTGCGTCAGGTATGCGACAAGCTGGGCGTAGAGCACAATGAAACGATGGGCAAAGGCAAGCTCATCGATGAGATCTTCGGCGAGAAGTGCGAGAAGAACTATATCCAGCCTACTTTCATCACAGACTATCCGAAAGAAATGTCGCCTCTGACGAAGGAGCACCGCACCAATCCGGAGCTGACAGAGCGATTCGAGCTGATGGTCAATGGCAAGGAGTTGGCCAACGCCTACTCGGAGCTGAACGACCCGATTGATCAGAGAGAACGTTTCGAAGAACAACTCAAGCTGTCCGAGAAAGGCGATGACGAAGCCATGTACATCGACAACGACTTCATCCGTGCCCTTGAATACGGTATGCCGCCGACCAGCGGTATGGGTATCGGTATGGACCGTTTGGTCATGCTATTGACAGGGCAGGAGAGTATTCAGGAGGTGCTCCTCTTCCCACAGATGAAGCCCGAGAAGGTGGCTCCACGAGATACGAAAGAGAAGTTCGCCGTTTGTGGCGTTCCCGAAGAGTGGGTACCTGTACTGCATAAGGCCGGCTATCTTACCGTACAGTCGATGCGAGAGGATAAACCGGGCAAGGTGATGCAGCAGCTGATGGACATCAATAAGAAATATAAGTTGGGGCTTGCCGGTTTGAATCTGGAAACCGTTTCGGCTTGGCAGGAAGCCCCATATGAG","5.10","-16.84","66479","MNILELSEQEVVRRNSLEQLRNLGIDPYPAAEYTVNAYSAEIKRNFNGDENVAKRQVSIAGRIMSRRIMGKATFMELQDAEGRIQIYITRDDICPGEDKEFYNTVVKKCTDIGDFIGVKGYVFRTQMGEISVHVQEMTFLSKAIRPLPVVKEKDGEVFDGFTDPEQRYRQRYVDLVVNSHVKDIFLKRTMVFNSMRSFFNECGYIEVDTPVLQSIPGGAAARPFITHHNALDIPLYLRIANELYLKRLIVGGFDGVYEFSRNFRNEGMDRTHNPEFTAMEIYVAYKDYNWMMNFTEQMLERICMDVLGTTQMKVGGKLIDFKAPYKRVTMIEAIHEHTGIDISGMNEAELRQVCDKLGVEHNETMGKGKLIDEIFGEKCEKNYIQPTFITDYPKEMSPLTKEHRTNPELTERFELMVNGKELANAYSELNDPIDQRERFEEQLKLSEKGDDEAMYIDNDFIRALEYGMPPTSGMGIGMDRLVMLLTGQESIQEVLLFPQMKPEKVAPRDTKEKFAVCGVPEEWVPVLHKAGYLTVQSMREDKPGKVMQQLMDINKKYKLGLAGLNLETVSAWQEAPYE","1452322 1450589","From GenBank (gi: 135135): There are two lysyl-tRNA ligases in E. coli: LysS is constitutively expressed while LysU is heat inducible. This protein is thought to be cytoplasmic. Reaction: ATP + L-lysine + tRNA(Lys) = AMP + pyrophosphate + L-lysyl-tRNA(Lys).TIGR ID: PG1370","lysyl-tRNA synthetase (lysine tRNA ligase)","Cytoplasm","PG1205 is similar to CT781, a predicted lysyl tRNA synthetase from Chlamydia trachomatis.Numerous significant hits to lysyl tRNA synthetase (lysine tRNA ligase) in gapped BLAST; e.g. residues 5-501 are 50% similar to emb|CAB11858.1| lysyl-tRNA synthetase of Bacillus subtilis, residues 5-501 are 48% similar to dbj|BAA88691.1| lysyl-tRNA synthetase of Bacillus stearothermophilus, residues 3-504 are 45% similar to gb|AAC75928.1| lysine tRNA synthetase, constitutive; suppressor of ColE1 mutation in primer RNA of Escherichia coli K12.This sequence is similar to BT2122.","
InterPro
IPR002313
Family
Lysyl-tRNA synthetase, class-2
PR00982\"[200-210]T\"[216-232]T\"[245-258]T\"[263-280]T\"[385-401]TTRNASYNTHLYS
PTHR22594:SF4\"[127-569]TtRNA-synt_lys_2
TIGR00499\"[5-504]TlysS_bact
InterPro
IPR004364
Domain
tRNA synthetase, class II (D, K and N)
PF00152\"[163-502]TtRNA-synt_2
InterPro
IPR004365
Domain
Nucleic acid binding, OB-fold, tRNA/helicase-type
PF01336\"[57-140]TtRNA_anti
InterPro
IPR006195
Domain
Aminoacyl-transfer RNA synthetase, class II
PS50862\"[188-502]TAA_TRNA_LIGASE_II
InterPro
IPR012340
Domain
Nucleic acid-binding, OB-fold
G3DSA:2.40.50.140\"[4-148]TOB_NA_bd_sub
noIPR
unintegrated
unintegrated
G3DSA:3.30.930.10\"[156-504]TG3DSA:3.30.930.10
PTHR22594\"[127-569]TPTHR22594
SSF50249\"[3-148]TNucleic_acid_OB
SSF55681\"[163-502]TSSF55681


","BeTs to 11 clades of COG1190COG name: Lysyl-tRNA synthetasesFunctional Class: JThe phylogenetic pattern of COG1190 is ----YQvcEbRHujgp-lin-Number of proteins in this genome belonging to this COG is 1","***** PR00982 (Lysyl-tRNA synthetase signature) with a combined E-value of 9.1e-54. PR00982A 200-210 PR00982B 216-232 PR00982C 245-258 PR00982D 263-280 PR00982E 385-401","Residues 236-287 are 69% similar to a (SYNTHETASE AMINOACYL-TRNA PROTEIN LIGASE BIOSYNTHESIS) protein domain (PD000871) which is seen in SYK_MYCGE.Residues 319-419 are 45% similar to a (SYNTHETASE LYSYL-TRNA AMINOACYL-TRNA) protein domain (PD110938) which is seen in SYK_SYNY3.Residues 421-469 are 73% similar to a (SYNTHETASE LYSYL-TRNA AMINOACYL-TRNA) protein domain (PD186099) which is seen in SYK_AQUAE.Residues 74-222 are 45% similar to a (SYNTHETASE AMINOACYL-TRNA PROTEIN LIGASE BIOSYNTHESIS) protein domain (PD002022) which is seen in SYK1_ECOLI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Wed Dec 10 14:45:10 2003","Wed Apr 18 15:14:28 MDT 2001","Wed Dec 10 14:45:10 2003","Thu Mar 1 13:09:14 MST 2001","Thu Mar 1 13:09:14 MST 2001","Thu Mar 1 13:09:14 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1205 is similar to PG0141 and PG1002, tRNA synthetases (E values of 2e-13 and 3e-09, respectively, where PG1205 to itself has an E value of 0).","Mon Jun 4 13:17:35 MDT 2001","Thu Mar 1 13:09:14 MST 2001","-68% similar to PDB:1BBU LYSYL-TRNA SYNTHETASE (LYSS) COMPLEXED WITH LYSINE (E_value = 5.9E_132);-68% similar to PDB:1BBW LYSYL-TRNA SYNTHETASE (LYSS) (E_value = 5.9E_132);-68% similar to PDB:1E1O LYSYL-TRNA SYNTHETASE (LYSU) HEXAGONAL FOR, COMPLEXED WITH L (E_value = 1.7E_131);-68% similar to PDB:1E1T LYSYL-TRNA SYNTHETASE (LYSU) HEXAGONAL FORM COMPLEXED WITH T LYSYL_ADENYLATE INTERMEDIATE (E_value = 1.7E_131);-68% similar to PDB:1E22 LYSYL-TRNA SYNTHETASE (LYSU) HEXAGONAL FORM COMPLEXED WITH LYSINE AND THE NON-HYDROLYSABLE ATP ANALOGUE AMP-PCP (E_value = 1.7E_131);","","","Residues 57 to 140 (E-value = 2e-18) place PG1205 in the tRNA_anti family which is described as OB-fold nucleic acid binding domain (PF01336)Residues 163 to 502 (E-value = 3.7e-156) place PG1205 in the tRNA-synt_2 family which is described as tRNA synthetases class II (D, K and N) (PF00152)","Wed Dec 10 14:45:10 2003","34541056","","","Leveque,F., Plateau,P., Dessen,P. and Blanquet,S. 1990. Homology of lysS and lysU, the two Escherichia coli genes encoding distinct lysyl-tRNA synthetase species. Nucleic Acids Res. 18 (2): 305-312. PubMed: 2183178.","","Wed Mar 29 15:18:57 MST 2000","1","","","PG1370" "PG1206","1453323","1452448","876","ATGAAAACCAAAAGAACGATTCCCCCCTCCGAGCTGATCATCAATACGGACGGTTCGGTCTTTCATCTGCATATTCGTCCCGAACAATTGGCCGATAAGGTCATATTGGTAGGTGATCCTGCTCGAGTGGATGCAGTCGCCTCTCGTTTCGAGCGTATTGAATGCAATGTATCCAATAGGGAGTTTCATACCGTCACGGGGTGGTATGGCGACAAGCGTATCACGGTGCAGAGCCACGGCATCGGCTCTGATAATATAGATATAGTCTTGAACGAACTGGATGCTCTGGCCAATATAGACTTCGATACCCGCCAGGTGAAGGATCGGCTACGCAAACTCACACTCGTAAGGGTGGGGACTTCGGGCGGATTGCAGGACAATACGCCCATAGGATCTTATGTGGCTGCAGAGCGAAGCATCGGCTTCGATGGAGTCATGTATTTCTATAGCGATACGGAGAAGATACGGGATGCGGCCTTCGAAGCAGCACTTCAGGATCAACTGGAGTGGAAAATCGAAGGGCTGAAACCCTACGTGATACCGGCTGACAAGACGCTGTCGGATCGAATATGTCGGGAGGACATCCTGCGAGGTGTGACTATTGCAGCCAATGGCTTCTACGGACCGCAGGGGCGTCGCTTGCGCTTACCCCTCAAAGACGAGGATCTGAACAGGAAGATACAGGCTTTCGACTTCAATGGCAGCCGTATTACGAACTATGAAATGGAAAGCTCCTCTTTGGCCGGTCTGGCTGCCCTGATGGGGCACGAAGCCATCACGGTCTGTTGTATCATCGCAGGCAGGAAATCCGAAAAGATGAATACCTCCTATCAGGGAAGTATAGAGGGCCTTATCGATTTGGTTCTGGAACGTATC","5.80","-3.97","32563","MKTKRTIPPSELIINTDGSVFHLHIRPEQLADKVILVGDPARVDAVASRFERIECNVSNREFHTVTGWYGDKRITVQSHGIGSDNIDIVLNELDALANIDFDTRQVKDRLRKLTLVRVGTSGGLQDNTPIGSYVAAERSIGFDGVMYFYSDTEKIRDAAFEAALQDQLEWKIEGLKPYVIPADKTLSDRICREDILRGVTIAANGFYGPQGRRLRLPLKDEDLNRKIQAFDFNGSRITNYEMESSSLAGLAALMGHEAITVCCIIAGRKSEKMNTSYQGSIEGLIDLVLERI","1453323 1452448","TIGR ID: PG1371","uridine phosphorylase","Cytoplasm","A few significant hits and numerous weak hits to uridine phosphorylase in gapped BLAST; e.g. residues 21-270 are 29% similar to gb|AAG19333.1| uridine phosphorylase of Halobacterium sp. NRC-1, residues 20-273 are 27% similar to gb|AAC21943.1| uridine phosphorylase of Haemophilus influenzae Rd, residues 30-270 are 26% similar to pir||D72516 probable uridine phosphorylase of Aeropyrum pernix (strain K1), residues 11-169 are 31% similar to gb|AAC65977.1| uridine phosphorylase of Treponema pallidum.","
InterPro
IPR000845
Family
Nucleoside phosphorylase
PF01048\"[32-292]TPNP_UDP_1
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.1580\"[14-290]TG3DSA:3.40.50.1580
PTHR21234\"[18-292]TPTHR21234
PTHR21234:SF7\"[18-292]TPTHR21234:SF7
SSF53167\"[20-290]TSSF53167


","BeTs to 5 clades of COG0813COG name: Purine-nucleoside (and uridine) phosphorylaseFunctional Class: FThe phylogenetic pattern of COG0813 is --------Eb-HUJgp-L---Number of proteins in this genome belonging to this COG is 1","***** IPB000845 (Purine and other phosphorylases, family 1) with a combined E-value of 3.1e-27. IPB000845A 34-48 IPB000845B 65-93 IPB000845C 111-135 IPB000845D 197-207 IPB000845E 236-267","Residues 22-258 are 26% similar to a (PHOSPHORYLASE TRANSFERASE) protein domain (PD003928) which is seen in UDP_HAEIN.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Mar 1 13:43:55 MST 2001","Thu Mar 1 13:43:55 MST 2001","Thu Mar 1 13:43:55 MST 2001","Thu Mar 1 13:43:55 MST 2001","Thu Mar 1 13:43:55 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 13:43:55 MST 2001","-41% similar to PDB:1K3F Uridine Phosphorylase from E. coli, Refined in the Monoclinic Crystal Lattice (E_value = 7.6E_12);-41% similar to PDB:1LX7 Structure of E. coli uridine phosphorylase at 2.0A (E_value = 7.6E_12);-41% similar to PDB:1RXC E. COLI uridine phosphorylase: 5-fluorouracil ribose-1-phosphate complex (E_value = 7.6E_12);-41% similar to PDB:1RXS E. coli uridine phosphorylase: 2'-deoxyuridine phosphate complex (E_value = 7.6E_12);-41% similar to PDB:1RXU E. coli uridine phosphorylase: thymidine phosphate complex (E_value = 7.6E_12);","","","Residues 32 to 292 (E-value = 2.1e-10) place PG1206 in the PNP_UDP_1 family which is described as Phosphorylase family (PF01048)","Tue May 8 14:40:06 MDT 2001","34541057","","","","","","1","","","PG1371" "PG1207","1454815","1453397","1419","ATGATGTGTCGTTCCATAACCCTCTTTCTCTTTGCTTTGATTTCCATTGTCGTAGGTAAGCAGCTCTCCGCCCAAAGCATTTCGGAACTTCGTCTCCTGATCGATAGCGGACGTTATGACAGGGCTTTGCCCATAGCCCAACAGTTGGTGGCCAAAAATCCAAAGCATGCCGATAATAACTATATGCTAGGGCTTCTTCTGTACAAGGCTGAACGCTACGAAGAAGCTATTGCTCCCCTTCGGGTGGCCGTAAGCCGGCGGAGTGATGCCTATGAGATGTTGGCGGATGCTTATGCCAAAGAGTATTTCTTCTCCGAAGCTCTTGCTGCACTGGAAAAACAGAAGGTTACTCTTGTGAAGAAAAAACAGGAAACAGTCTCCATAGATGCCGGAATAGACCGTATGCGACGAGCTGTGCGCTTACTGGACAGAGCCGAATGGGTGGAGGTGATAGACAGCGTACGGACGAATAAAGCCGATCTCCTGTCGGCCTACAATCTCATAGCCGATAACGGTCGGCTCGAATGGGTGAAAGGAAACCAAGGGGAGGCGACTTCTTTTGTCAATGGGCGCGGCGACCATGCCATCATGACGGAGAAAGGTGAGGATGGAGTTTACAGCCTGCATGAAGCCCACCGGATCGGTGGCAAATGGGGCAATGCGATCCCCCTCGAAAAACTCAATTCCCGATTCAATGAAAACTATCCTTCGTTACGGGCGGATGGTTTTACCCTGCTCTTTGCCAGTGATCGACCTGATGGAATAGGCGGATATGATCTGTATATGACCCGTCGTGATTTGGAGGATGGCATTTTTCTGGAACCAACTTTGCTCGGTATGCCTTTCAATTCCCCTTACAACGATTATCTGCTGGTGTACGACGAATTACGTGGGATCGGCTTCTTTGCCAGTGACCGTTTTTGTCCTGCGGATGTTGTCACTGTCTATACCTTCGTTATCAATGAAGAAGGGCGCCCTGTGGCTACTGACGATATGGCCCTCAAAAGAGCGTATGCATCCCTCAAGAGCATAAGAGCGACGCAAGACCCTGAGCGAGACTACAGTCGTCTGATCGCATCGGCTCGGGACAACCGCACCGATGCAGAGAAGAAGGCTTCCGAACGTCAGATTTATTTCCCTATGCAGGGGATGCGTATCTATACGCGCTGGAGCGACTTCCAAAGCAGCGAAGCCAAGTCGCTCTATCAGGATGTGATGGCTCGGAAAAGAAAATTGGAACAGGCGGCTACCCGTCTGGAAGAGTTACGACTCTTGTATGGAAGAGCATCGGCTTTGGAGCGAAGCGGTATGAAGCAGGAAATTCTTCGTCTCGAAAATGCCATTCCTCCACTGGAAGAAGAAGTAGGCCGAATGGAAAAGGAAGTCAGAAACATGGAGTTACAAGCCGTGCAAGGCTTT","6.30","-2.07","53841","MMCRSITLFLFALISIVVGKQLSAQSISELRLLIDSGRYDRALPIAQQLVAKNPKHADNNYMLGLLLYKAERYEEAIAPLRVAVSRRSDAYEMLADAYAKEYFFSEALAALEKQKVTLVKKKQETVSIDAGIDRMRRAVRLLDRAEWVEVIDSVRTNKADLLSAYNLIADNGRLEWVKGNQGEATSFVNGRGDHAIMTEKGEDGVYSLHEAHRIGGKWGNAIPLEKLNSRFNENYPSLRADGFTLLFASDRPDGIGGYDLYMTRRDLEDGIFLEPTLLGMPFNSPYNDYLLVYDELRGIGFFASDRFCPADVVTVYTFVINEEGRPVATDDMALKRAYASLKSIRATQDPERDYSRLIASARDNRTDAEKKASERQIYFPMQGMRIYTRWSDFQSSEAKSLYQDVMARKRKLEQAATRLEELRLLYGRASALERSGMKQEILRLENAIPPLEEEVGRMEKEVRNMELQAVQGF","1454815 1453397","TIGR ID: PG1372","hypothetical protein","Cytoplasm, Periplasm","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR011659
Repeat
WD40-like Beta Propeller
PF07676\"[225-262]TPD40
InterPro
IPR011990
Domain
Tetratricopeptide-like helical
G3DSA:1.25.40.10\"[31-113]TTPR-like_helical
InterPro
IPR013026
Domain
Tetratricopeptide region
PS50293\"[23-90]TTPR_REGION
noIPR
unintegrated
unintegrated
SSF48452\"[27-113]TSSF48452


","BeTs to 8 clades of COG0457COG name: TPR-repeat-containing proteinsFunctional Class: RThe phylogenetic pattern of COG0457 is AMTKYQVCEB-HUJ--OLINXNumber of proteins in this genome belonging to this COG is 21","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Mar 1 13:46:05 MST 2001","","Thu Mar 1 13:46:05 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 13:46:05 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Mar 1 13:46:05 MST 2001","34541058","","","","","","1","","","PG1372" "PG1207.1","1454893","1455165","273","ATGCAGGCAGCCATCACCGTTGCAATACCGATACTATACAAAGATAGTGTTTCTTGCTCACATGCCGAATCCGAGCATTTTTCCGGCACTGGAGTGACAGTAATTATATTTGAGGTTGGCAGAGACTGCATGAAGTACTCCTTTCTTCGTCAAATCAATGCATGTGTCTGTTTTGATCAATATGAGGAGATGGAAGGGTTATTGTGCAATGGTCTCTATATGTTTTTCATTCAGTACACGCCAACTATTTTACGAGGGGATCTATTCGCTTTT","","","10293","MQAAITVAIPILYKDSVSCSHAESEHFSGTGVTVIIFEVGRDCMKYSFLRQINACVCFDQYEEMEGLLCNGLYMFFIQYTPTILRGDLFAF","","TIGR ID: PG1373","hypothetical protein","Cytoplasm","No hit found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","","","Thu Mar 1 13:52:29 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 13:52:29 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Mar 1 13:52:29 MST 2001","34541059","","","","","","1","","","PG1373" "PG1208","1456633","1455350","1284","ATGAAACTTTCATCTAAGAAAATCTTAGCAATCATTGCATTGCTGACGATGGGACATGCTGTGCAGGCACAGTTTGTTCCGGCTCCCACCACAGGGATTCGCATGTCTGTCACTACAACCAAGGCCGTAGGCGAAAAAATCGAATTGTTGGTTCATTCCATAGAGAAGAAAGGCATCTGGATCGATCTCAATGGGGATGCCACTTACCAACAAGGAGAGGAAATAACCGTATTCGATGAGGCATACCACGAATACACGATCGGGACGCAAACCCTCACTATCTATGGTAATACGACCCGATTGGGCTGTCGATCTACCGGTGCAACGGCTGTCGATGTAACGAAAAACCCTAATCTGACCTATCTCGCATGCCCGAAAAATAATCTGAAATCATTGGACTTGACGCAAAACCCAAAGCTGCTGCGAGTTTGGTGCGACTCTAACGAAATAGAAAGTTTGGACCTGAGTGGCAATCCGGCTTTGATCATCCTCGGCTGTGACAGGAATAAGCTGACTGAGCTGAAGACCGATAACAACCCCAAGTTGGCCTCTCTTTGGTGTTCTGATAATAACCTGACGGAGTTGGAACTCAGTGCCAATCCTCGTCTCAATGATCTTTGGTGCTTCGGTAATCGGATCACGAAACTCGATCTGAGTGCCAATCCTCTATTGGTAACACTTTGGTGCAGTGACAATGAGCTTTCGACCTTGGATCTTTCCAAGAATTCGGACGTTGCTTACCTTTGGTGTTCATCGAACAAACTTACATCCTTGAATCTGTCGGGGGTGAAGGGACTGAGTGTTTTGGTTTGTCATTCCAATCAGATCGCAGGTGAAGAAATGACGAAAGTGGTGAATGCTTTGCCCACACTATCTCCCGGCGCAGGCGCTCAGAGCAAGTTCGTCGTTGTAGACCTCAAGGACACTGATGAGAAGAATATCTGTACCGTAAAGGATGTGGAAAAAGCTAAAAGTAAGAACTGGCGAGTATTTGACTTCAACGGTGATTCTGACAATATGCTTCCATACGAAGGAAGTCCGACATCGAACTTGGCAGTAGATGCTCCCACTGTCAGGATATATCCCAATCCGGTAGGAAGATATGCGCTCGTCGAGATCCCCGAGTCTCTTTTAGGGCAGGAAGCTGCTTTATACGATATGAATGGGGTAAAAGTCTATAGTTTCGCGGTAGAGTCTCTTCGTCAGAACATTGACCTGACACATCTTCCCGACGGCACTTATTTCTTCCGTCTCGATAACTATACCACTAAGCTCATCAAACAG","5.20","-7.25","47138","MKLSSKKILAIIALLTMGHAVQAQFVPAPTTGIRMSVTTTKAVGEKIELLVHSIEKKGIWIDLNGDATYQQGEEITVFDEAYHEYTIGTQTLTIYGNTTRLGCRSTGATAVDVTKNPNLTYLACPKNNLKSLDLTQNPKLLRVWCDSNEIESLDLSGNPALIILGCDRNKLTELKTDNNPKLASLWCSDNNLTELELSANPRLNDLWCFGNRITKLDLSANPLLVTLWCSDNELSTLDLSKNSDVAYLWCSSNKLTSLNLSGVKGLSVLVCHSNQIAGEEMTKVVNALPTLSPGAGAQSKFVVVDLKDTDEKNICTVKDVEKAKSKNWRVFDFNGDSDNMLPYEGSPTSNLAVDAPTVRIYPNPVGRYALVEIPESLLGQEAALYDMNGVKVYSFAVESLRQNIDLTHLPDGTYFFRLDNYTTKLIKQ","1456633 1455350","TIGR ID: PG1374","immunoreactive 47 kDa antigen PG97","Outer membrane, Periplasm, Cytoplasm, Extracellular","PG1208 is identical to a previously sequenced P.gingivalis protein in Genbank, AAD38982.Two weak hits in gapped BLAST; e.g. residues 111-276 are 29% similar to gb|AAC97727.1| ORF MSV251 hypothetical protein containing C3H2C3 RING finger of Melanoplus sanguinipes entomopoxvirus, residues 101-291 are 32% similar to gb|AAF00615.1| SspH2 of Salmonella typhimurium.","
InterPro
IPR001611
Repeat
Leucine-rich repeat
PR00019\"[213-226]T\"[231-244]TLEURICHRPT
noIPR
unintegrated
unintegrated
G3DSA:3.80.10.10\"[96-291]TG3DSA:3.80.10.10
PTHR23154\"[97-276]TPTHR23154
SSF52058\"[32-291]TSSF52058


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Mar 15 13:14:59 MST 2001","Tue Mar 6 08:59:04 MST 2001","Thu Mar 1 14:20:01 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 19-336 are 32% similar to PG0322, a conserved hypothetical protein. Similarites are also seen to PG1720, PG0452, PG1356, PG1251. ","Thu Mar 1 14:20:01 MST 2001","Thu Mar 1 14:20:01 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Jun 14 12:44:45 MDT 2001","34541060","Thu Mar 1 14:20:01 MST 2001","Ross,B.C., Barr,I., Patterson,M., Agius,C., Rothel,L., Margetts,M., Hocking,D. and Webb,E. 10-DEC-1998. Porphyromonas gingivalis polypeptides and nucleic acids. Patent: Australia (AU 98/01023)-PCT. CSL Ltd; 45 Poplar Road; R&D; Parkville, Victoria; Australia.Ross,B.C. 25-MAY-1999. Direct Submission. R&D, CSL Ltd, 45 Poplar Road, Parkville, Victoria 3052, Australia.","","Thu Mar 1 14:20:01 MST 2001","","1","","","PG1374" "PG1209","1459031","1457811","1221","ATGAGTTACAAAGATGCAAAGAATTACATACATCAGTTTATATCTTTGCACAAACAACATTTCCTATTCCAATCCTGCATGACAAATTCCTCTTCCCGAACAAGAAGTCTACCGTCGGAAAGCAAGATCGATCCTCTTCCTTATTTCCCTGAATTGCGAAAGCTATTGGCCGAATGGTACGATGCCAATAAACGGGATTTGCCGTGGAGACAAACAGACGACCCCTATCGCATCTGGATATCCGAGGTTATACTGCAACAGACGCGCGTGGAGCAGGGGAGGGACTATTATCATCGCTTTATCGAATGCTTCCCCGATGTCCACTCCTTGTCTCTCGCTTCTGAGGATGAGGTGCTGAAGCAGTGGGAGGGCTTGGGCTATTACTCCCGGGCGCGCAATCTGCATCGTGCAGCCCGTATGATAGTCTCCGACTTCGGAGGTTGCATACCTCGTACCAGACAGGAAATACTACGGCTCCCGGGTATAGGCGATTACACGGCTGCTGCTGTTCTCTCCTTTGCTTATGATCTGCCTTTTGCAGCCGTCGATGGCAATATCTTTCGTGTCATCAGCCGGCTCATGAACCTTGATACGCCGATAGATACCCCTGCCGGCAAGAAGCTTTTTTCTTTCTGGGCTGATGCTTTGCTCGATAGGGAAGCTCCGGCAAGGCACAATCAGGCCATTATGGAGTTTGGGGCACTTCATTGTACACCCACGTCTCCTTCTTGTCTGCTATGCCCGGTGCGTCGTTTTTGTATGGCCGATACAGCCGGTTGTGTCGATGCTTTGCCGGTCAAAAAGGGTGGACTTAGGATTACAAATCGCTATCTCTATTTCATATATATACGGGTTATCACCCCGACCGGTGTCTACACTTATATTCGAAGGCGTCCGAGTGGAGATATATGGCAGGGTTTGTACGAGTTTCCCTGTGTCGAACTATCCGATCATGCAGTTTTAGAGACCTTGTTGCTGTCTCCCGAATTAGGCAATTTGCTACGATCCATTTCCGGTAGTATGGATAGCTTACCATTCAAAACATTCAAGCACCAACTTACGCATCGTAACCTGTGGATTCATGGTTATACGCTTACAGCCCGTCTCGATAAAGCTCCCGATCTGGATGGCTACCGCTGCATCCGAGAGGAACAGCTTGACGATTTTGCCTTTCCCCGTGCCCTCAATTTGCTGCTCGATGCACTGTCCCTTTCTGATAAA","7.80","4.43","46818","MSYKDAKNYIHQFISLHKQHFLFQSCMTNSSSRTRSLPSESKIDPLPYFPELRKLLAEWYDANKRDLPWRQTDDPYRIWISEVILQQTRVEQGRDYYHRFIECFPDVHSLSLASEDEVLKQWEGLGYYSRARNLHRAARMIVSDFGGCIPRTRQEILRLPGIGDYTAAAVLSFAYDLPFAAVDGNIFRVISRLMNLDTPIDTPAGKKLFSFWADALLDREAPARHNQAIMEFGALHCTPTSPSCLLCPVRRFCMADTAGCVDALPVKKGGLRITNRYLYFIYIRVITPTGVYTYIRRRPSGDIWQGLYEFPCVELSDHAVLETLLLSPELGNLLRSISGSMDSLPFKTFKHQLTHRNLWIHGYTLTARLDKAPDLDGYRCIREEQLDDFAFPRALNLLLDALSLSDK","1459064 1457811","TIGR ID: PG1378","adenine glycosylase (A/G-specific adenine glycosylase)","Cytoplasm","This sequence is similar to CT107.Numerous significant hits to adenine glycosylase in gapped BLAST; e.g. residues 56-315 are 47% similar to dbj|BAB04650.1| adenine glycosylase of Bacillus halodurans, residues 51-315 are 43% similar to gb|AAK04939.1|AE006318_2 A/G-specific adenine glycosylase of Lactococcus lactis subsp. lactis, residues 59-375 are 37% similar to gb|AAF93625.1| A/G-specific adenine glycosylase of Vibrio cholerae.","
InterPro
IPR000086
Domain
NUDIX hydrolase
G3DSA:3.90.79.10\"[277-402]TNUDIX_hydrolase
InterPro
IPR000445
Domain
Helix-hairpin-helix motif
PF00633\"[144-173]THHH
InterPro
IPR003265
Domain
HhH-GPD
PF00730\"[80-214]THhH-GPD
SM00478\"[84-235]TENDO3c
InterPro
IPR003583
Domain
Helix-hairpin-helix DNA-binding, class 1
SM00278\"[154-173]THhH1
InterPro
IPR003651
Domain
Iron-sulfur cluster loop
SM00525\"[236-256]TFES
InterPro
IPR004036
Domain
Endonuclease III, HhH
PS01155\"[147-176]TENDONUCLEASE_III_2
InterPro
IPR005760
Family
A/G-specific adenine glycosylase MutY, bacterial form
TIGR01084\"[51-331]TmutY
InterPro
IPR011257
Domain
DNA glycosylase
SSF48150\"[48-268]TDNA_glycsylse
InterPro
IPR015797
Domain
NUDIX
SSF55811\"[275-402]TNUDIX_hydrolase
noIPR
unintegrated
unintegrated
G3DSA:1.10.340.30\"[66-177]TG3DSA:1.10.340.30
PTHR10359\"[68-288]TPTHR10359
PTHR10359:SF1\"[68-288]TPTHR10359:SF1


","BeTs to 7 clades of COG1194COG name: A/G-specific DNA glycosylaseFunctional Class: LThe phylogenetic pattern of COG1194 is --t-----ebrhuj---lin-Number of proteins in this genome belonging to this COG is 1","***** IPB001502 (Endonuclease III) with a combined E-value of 2.1e-28. IPB001502A 63-84 IPB001502B 145-176 IPB001502C 182-192 IPB001502D 237-247","Residues 84-255 are 48% similar to a (ENDONUCLEASE III DNA HYDROLASE) protein domain (PD001558) which is seen in O31584_BACSU.","","Thu Jun 14 11:37:26 MDT 2001","","Thu Jun 14 11:37:26 MDT 2001","Thu Jun 14 11:37:26 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:37:26 MDT 2001","Thu Jun 14 11:37:26 MDT 2001","","","Thu Mar 1 14:58:18 MST 2001","Mon Jun 25 10:44:19 MDT 2001","Thu Mar 1 14:58:18 MST 2001","Mon Jun 25 10:44:19 MDT 2001","Mon Jun 25 10:44:19 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 51-253 are 26% similar to PG1547, a predicted endonuclease III.","Mon Jun 25 10:44:19 MDT 2001","Thu Mar 1 14:58:18 MST 2001","-56% similar to PDB:1RRS MutY adenine glycosylase in complex with DNA containing an abasic site (E_value = 7.2E_62);-56% similar to PDB:1VRL MutY adenine glycosylase in complex with DNA and soaked adenine free base (E_value = 7.2E_62);-55% similar to PDB:1RRQ MutY adenine glycosylase in complex with DNA containing an A:oxoG pair (E_value = 1.0E_60);-58% similar to PDB:1KG4 Crystal structure of the K142A mutant of E. coli MutY (core fragment) (E_value = 1.6E_40);-59% similar to PDB:1KG7 Crystal Structure of the E161A mutant of E.coli MutY (core fragment) (E_value = 1.6E_40);","","","Residues 80 to 214 (E-value = 1.3e-16) place PG1209 in the HhH-GPD family which is described as HhH-GPD superfamily base excision DNA repair protein (PF00730)Residues 144 to 173 (E-value = 1.2e-05) place PG1209 in the HHH family which is described as Helix-hairpin-helix motif (PF00633)","Mon Jun 25 10:44:19 MDT 2001","34541062","","","","","","1","","","PG1378" "PG1210","1459080","1460015","936","ATGAAAAATTTTTCTTTTTTTACCCTCCTTGTTCTGGCGGTTTTGAGCATCACCCTCTCTTCATGTGGTAACAAGAAAAGCTCTGCAGACAAACAAAAAGAGCCTTATACCCTCTCTCTCGGAGCCATGCCTTCCATGGACTATCTGCCTTTCGTTGTAGCACAGAAAACCGGCATTTACGATTCACTCAGACTGAAACTGGAGATTGTCAAGTTCTATTCGCCCAATGAACGTGATGCGGCTTTCCATTCGGGCAATGTGGAGGGTACGGTCATCGATTATACGGGAGCAGCCATGCAGCAAGCAGGAGGTATCGATCTGCAACTGGTGATGCGTCTCGACGGATACTTCCGGCTGGTAATGTCCAAAGATTATACAGGTGAGAGCTTGGAAACCCTCAAAGGAAAGAATCTGGGTATATCGCGCAATACGGTCATTGAGTACACCACCGACCGAATTATCAATACCGCAGGACTGGACGAAAGCGAGATAACCAAGACCGAAGTCAATAAAATCCCTTTGCGCTTGGAAATGCTTCGCAGCGGACAGATCGACGCAGCCGTCCTACCGGATCCATTCATTACCATTGCGATGGCGGATGGAATGATGTCCCTTGTCTCCACTCAGGATCTGGGCATATTCGTAACCGGAGCGATGTTTGCCGGCAGTGTCATCAGAGAGAAGCAAGAAGCCATCGATATACTGCTTCGAGGATACGATCTGGCAGTGGACTACATCCTTTCGCATGATAGAAAAGCCATCCGAAATATCCTGATCGAAGATGTCGGTGTACCCGAACCCTTGGTAGATGATGTGATTCTGCCTGACTATACACATGGACAGAAGCCCACAATAGAAGATCTGCAACAGACTATCGACTGGCTACATGCCAAGAAATTGGTCCCGAGCGACTATACCGGCAAGGATCTGATCCGC","4.80","-9.07","34568","MKNFSFFTLLVLAVLSITLSSCGNKKSSADKQKEPYTLSLGAMPSMDYLPFVVAQKTGIYDSLRLKLEIVKFYSPNERDAAFHSGNVEGTVIDYTGAAMQQAGGIDLQLVMRLDGYFRLVMSKDYTGESLETLKGKNLGISRNTVIEYTTDRIINTAGLDESEITKTEVNKIPLRLEMLRSGQIDAAVLPDPFITIAMADGMMSLVSTQDLGIFVTGAMFAGSVIREKQEAIDILLRGYDLAVDYILSHDRKAIRNILIEDVGVPEPLVDDVILPDYTHGQKPTIEDLQQTIDWLHAKKLVPSDYTGKDLIR","1458972 1460015","May serve as SBP for PG1211 and PG1212, ABC elements.See ABC Transporters Analysis.TIGR ID: PG1379","probable thiamine biosynthesis protein/ABC related SBP","Cytoplasm","One significant hit in gapped BLAST; e.g. residues 9-312 are 29% similar to gb|AAB91141.1| thiamine biosynthesis protein, putative of Archaeoglobus fulgidus.","
noIPR
unintegrated
unintegrated
PS51257\"[1-22]TPROKAR_LIPOPROTEIN
SSF53850\"[32-302]TSSF53850


","BeTs to 4 clades of COG0715COG name: Putative taurine-binding periplasmic proteinFunctional Class: PThe phylogenetic pattern of COG0715 is A---Y-VCEB-h------in-Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 38-140 are 28% similar to a (PROTEIN TRANSPORT MEMBRANE NITRATE ATP-BINDING PUTATIVE) protein domain (PD003037) which is seen in O30148_ARCFU.Residues 141-312 are 31% similar to a (THIAMINE BIOSYNTHESIS PROTEIN, PUTATIVE) protein domain (PD107495) which is seen in O30148_ARCFU.","","Thu Jun 14 11:37:43 MDT 2001","","Thu Jun 14 11:37:43 MDT 2001","Thu Jun 14 11:37:43 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:37:43 MDT 2001","Thu Jun 14 11:37:43 MDT 2001","","Mon Jun 25 11:49:40 MDT 2001","Sat Jun 2 16:14:32 MDT 2001","Mon Jun 25 11:47:04 MDT 2001","Thu Mar 1 15:02:57 MST 2001","","Fri Jun 15 22:26:13 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 15:02:57 MST 2001","-45% similar to PDB:1VS9 Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements. This file, 1VS9, contains the 50S ribosome subunit. 30S ribosome subunit is in the file 2I1C (E_value = );-45% similar to PDB:1WKI solution structure of ribosomal protein L16 from thermus thermophilus HB8 (E_value = );-45% similar to PDB:2HGJ Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons. This entry 2HGJ contains 50S ribosomal subunit. The 30S ribosomal subunit can be found in PDB entry 2HGI. (E_value = );-45% similar to PDB:2HGQ Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex. This entry 2HGQ contains 50S ribosomal subunit. The 30S ribosomal subunit can be found in PDB entry 2HGP. (E_value = );-45% similar to PDB:2HGU 70S T.Th. ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A. This entry 2HGU contains 50S ribosomal subunit. The 30S ribosomal subunit can be found in PDB entry 2HGR. (E_value = );","","","No significant hits to the Pfam 11.0 database","Fri Jun 15 22:26:13 MDT 2001","34541063","","","","","","1","","","PG1379" "PG1211","1460070","1460765","696","ATGATCTCTATTCGCAATCTGGCCGTTACATATCGCCACGGGAGTACGGAAGTGAAAGCATTGGACGGTCTTTCACTGAATATTCCCAAAGGAGAGATTTTTGCCATAACGGGACCTTCGGGCTGTGGCAAATCAACACTCCTGCACGTTTTGGCAGGTGTACTGACAGAGTATGAGGGCGAAGTGCTATTCGATGGGAAACCTCTGAATCCGAAATCTTTTTCCATAGGAATAGTTCCCCAGCAATATGGGCTTTTGCCATGGAAACGAGTGCATGAGAATATCGTACTTCCATATACCCTGCGAAAGGAAGCCATAGAGATGCCGGAGTTTGAGAGCATTGTACACACCCTCGGCTTGTCGGACATATTGCATCGGTATCCGAAGGATCTAAGCGGAGGGCAACGTCAGCGTGTGGCACTGGCACGAGTATTTCTCCAACGCCCGCAATTGCTCCTGCTTGACGAAGCATTTGCAGCTCTCGATATGCTCACAGCCGAGAAAAGCAGACAACTCTTCCTTGGACTTTGGGATAAACATCGGGTCACCACTGTCATGGTAACGCACAATGTGGAAGAAGCCGTAGCGATGAGTAGCCGGGTAGCTGTCATAGGGGGTACGCCCGGACGAATCAGAGGCTTGTGCGAACATCCGGATAGCGACACCATCCGTAGAATGCTGAACCGGATCGAACCA","8.70","3.83","25797","MISIRNLAVTYRHGSTEVKALDGLSLNIPKGEIFAITGPSGCGKSTLLHVLAGVLTEYEGEVLFDGKPLNPKSFSIGIVPQQYGLLPWKRVHENIVLPYTLRKEAIEMPEFESIVHTLGLSDILHRYPKDLSGGQRQRVALARVFLQRPQLLLLDEAFAALDMLTAEKSRQLFLGLWDKHRVTTVMVTHNVEEAVAMSSRVAVIGGTPGRIRGLCEHPDSDTIRRMLNRIEP","1460070 1460765","See ABC Transporters Analysis.TIGR ID: PG1380","ABC transporter, ATP-binding protein (nitrate ABC transporter, ATP-binding protein)","Cytoplasm, Inner membrane","This sequence is similar to CT180.Numerous significant hits to ABC transporter, ATP-binding proteins in gapped BLAST; e.g. residues 17-220 are 37% similar to gb|AAB91142.1| nitrate ABC transporter, ATP-binding protein of Archaeoglobus fulgidus, residues 2-212 are 35% similar to pir||D64351 nitrate transport ATP-binding protein of Methanococcus jannaschii, residues 2-211 are 36% similar to gb|AAG05682.1|AE004655_4 probable ATP-binding component of ABC transporter of Pseudomonas aeruginosa.","
InterPro
IPR003439
Domain
ABC transporter related
PD000006\"[131-168]TABC_transporter
PF00005\"[31-205]TABC_tran
PS00211\"[131-145]TABC_TRANSPORTER_1
PS50893\"[4-231]TABC_TRANSPORTER_2
InterPro
IPR003593
Domain
AAA+ ATPase, core
SM00382\"[30-209]TAAA
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[1-230]TG3DSA:3.40.50.300
PTHR19222\"[2-204]TPTHR19222
SSF52540\"[1-219]TSSF52540


","BeTs to 5 clades of COG1116COG name: ABC-type nitrate transport system, ATPase componentFunctional Class: PThe phylogenetic pattern of COG1116 is Am----VCEB-h---------Number of proteins in this genome belonging to this COG is 1","***** IPB001617 (ABC transporters family) with a combined E-value of 1.2e-16. IPB001617A 36-51 IPB001617B 132-143","Residues 21-70 are 58% similar to a (ATP-BINDING TRANSPORT PROTEIN TRANSPORTER ABC) protein domain (PD000005) which is seen in O30149_ARCFU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Fri Jun 15 22:22:33 MDT 2001","Thu Mar 1 15:28:16 MST 2001","Thu Mar 1 15:28:16 MST 2001","Thu Mar 1 15:28:16 MST 2001","Thu Mar 1 15:28:16 MST 2001","Thu Mar 1 15:28:16 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1-212 are 36% similar to PG0618, a predicted ABC transport component; ATPase component. Similarities are also seen to PG1451, PG0921, PG0254, PG1477, PG0844, PG0566, PG1917, PG0584, PG1497, PG0605, PG1533, PG1923, PG1048, PG1049, PG1084, PG0903, PG0233, PG1467, PG1929, most of which are ABC transporter proteins.","Thu Mar 1 15:28:16 MST 2001","Thu Mar 1 15:28:16 MST 2001","-50% similar to PDB:2D62 Crystal structure of multiple sugar binding transport ATP-binding protein (E_value = 1.3E_26);-52% similar to PDB:1G29 MALK (E_value = 1.9E_25);-51% similar to PDB:1V43 Crystal Structure of ATPase subunit of ABC Sugar Transporter (E_value = 3.3E_25);-51% similar to PDB:1VCI Crystal structure of the ATP-binding cassette of multisugar transporter from Pyrococcus horikoshii OT3 complexed with ATP (E_value = 3.3E_25);-52% similar to PDB:1OXS Crystal structure of GlcV, the ABC-ATPase of the glucose ABC transporter from Sulfolobus solfataricus (E_value = 4.7E_24);","","","Residues 31 to 205 (E-value = 2e-52) place PG1211 in the ABC_tran family which is described as ABC transporter (PF00005)","Fri Mar 23 15:10:23 MST 2001","34541064","","","","","","1","","","PG1380" "PG1212","1460765","1461511","747","ATGAGAAAGACAAAAGGGTTTCTTGGGCGAGTGCTAATGGGTGCTCTACTGCTCAATCTCCTGTGGTATCTGGCTGCACTACTCCTCAATACCCCTGTGCTGGTGAATCCTCTTACTGTTTACTCCCAAATAGGAACGGTATGGCAGCAGTCCATGTCCGCACATCTGTTGGCGAGCTTGCTACGAATCGTCATCGGCATTTCGATAGCCCTCGTCTTGGGATTCATAGTAGCACTCTCCATGTTCCGTTACAAGAACTTTGGCCGTGTGATGGATTCGTTCGTCTATTTCTGCTATCCTATCCCCAAATTAGCACTCTTACCGATCATCATGCTCTTGGCAGGACTGGGCGACGTGACCAAAATAATTATGATCGTACTGATCATCATCTTCCAAATCATCGTCAACCTGCGCGACAGCCTTCGCAATATCTCCAAAGAGAGCTTTCTTGTCCTTACCTCATTGGGAGCCACTCATGCTCAACTGATGCGTCATCTGGTCCTACCGGCCATTACTCCCGAAGCACTCTCCACACTACGAGTGGCCATTGGGACAGCCATATCAGTACTCTTCGTGACAGAGACATACGGGACGAATAAGGGCATGGGATTCTTCATTGTCGATGCATGGATGCGTATCAGCTATACGGAGATGTACGTGGGCATCGTGGTTTTAGGGATGGCAGGTTTTTTCCTTTTTTTGCTCGTGGATGGTCTTGAGACCGCACTATGCAGATGGAGGAACAGT","10.70","9.61","27637","MRKTKGFLGRVLMGALLLNLLWYLAALLLNTPVLVNPLTVYSQIGTVWQQSMSAHLLASLLRIVIGISIALVLGFIVALSMFRYKNFGRVMDSFVYFCYPIPKLALLPIIMLLAGLGDVTKIIMIVLIIIFQIIVNLRDSLRNISKESFLVLTSLGATHAQLMRHLVLPAITPEALSTLRVAIGTAISVLFVTETYGTNKGMGFFIVDAWMRISYTEMYVGIVVLGMAGFFLFLLVDGLETALCRWRNS","1460765 1461511","See ABC Transporters Analysis.TIGR ID: PG1381","permease protein (probable nitrate ABC transporter, permease protein)","Inner membrane, Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 49-246 are 33% similar to gb|AAB91143.1| nitrate ABC transporter, permease protein of Archaeoglobus fulgidus, residues 40-221 are 26% similar to gb|AAG07323.1|AE004811_6 probable permease of ABC taurine transporter of Pseudomonas aeruginosa, residues 55-247 are 29% similar to dbj|BAB06400.1| ABC transporter (permease) of Bacillus halodurans.","
InterPro
IPR000515
Family
Binding-protein-dependent transport systems inner membrane component
PF00528\"[52-249]TBPD_transp_1
PS50928\"[56-236]TABC_TM1


","BeTs to 7 clades of COG0600COG name: Uncharacterized permeasesFunctional Class: RThe phylogenetic pattern of COG0600 is Am-k--VCEB-h--gpo-in-Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 40-239 are 23% similar to a (ABC TRANSPORTER PERMEASE FUSED) protein domain (PD068735) which is seen in Y355_HAEIN.Residues 135-203 are 40% similar to a (TRANSPORT PROTEIN TRANSMEMBRANE PERMEASE MEMBRANE SYSTEM) protein domain (PD000120) which is seen in O30150_ARCFU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Fri Jun 15 22:23:29 MDT 2001","Thu Mar 1 15:46:44 MST 2001","Thu Mar 1 15:46:44 MST 2001","Thu Mar 1 15:46:44 MST 2001","","Thu Mar 1 15:46:44 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 15:46:44 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 52 to 249 (E-value = 3.5e-15) place PG1212 in the BPD_transp_1 family which is described as Binding-protein-dependent transport system inner membrane component (PF00528)","Fri Mar 23 15:11:33 MST 2001","34541065","","","","","","1","","","PG1381" "PG1213","1461474","1462610","1137","ATGGTCTTGAGACCGCACTATGCAGATGGAGGAACAGTTAGCCATACAATCAAAGAAATCATCATTCAACAAAACAATAACGATCAAGAAATGAAAGTAAAACATCTATTAGCTGCATCCTTGATGATGCTAGGAACAGGGAATATTTGCGCCCAAAAGTCCGCAAACAGTATTTTCAATGCAATCAAAGAACGGGTTAGCCTCAGTGGTTATGCGCAAGCAGGGTTTTCCTCCTTGTGGCTCCCTACGGCGAGTTCCGAAAAGGAGAACTACAACACATTCGATGTAAAGCGTATCACCCTTCGTGCCAATGTCGCCATCACGGACAAATGGTCTGTAACCTTCATTCCTGATTTTGCAAAAAGATACACCAATTTAGAACTATACACTTCCTTCCGCACTTGTTCTGGTTTTGGAATACGATTGGGACAGTTCAAGACAGCATTTTCGATCGAAAACCAACTGTCTCCAACTACCATCGAAACTATTTCATGCGGATCGATGGCCACCAACTTCCTCGCAGCAGGAAATGGCTCCGATCCTCTGATGGGGGCTCAGAGTGGCCGCGACGTAGGCTTGGAAATCTACGGTGATCTCTTCAATGATATACTGGGCTATCGTCTCGGAGTGCTCAACGGCCAAGGCATAAATACACTCGATGGCAGCAAACACAAAACTTTAGAAGGGAGTCTTACACTTCGTCCCATCGAGTGTCTATCCTTTACCGGTAGTTTCATGAGTGGCAAGACCGCTGCCCTGAATGATGCTCCCATCAAAATCAATAGCAAACAGATTATGGCCGGAGATTTATACGACAGATCCCGCTGGAGTGTAGGAGGTATGTTCCGTTCCAAATACTTGGATCTGCGTAGTGAATACCTCGAAGGCAAAGACGATGACATGATTAGTAAGGGCTTTTACGTCACAGGGGTAGGACGATTGTTCAAAAACCTCGATATCATCGGATCATATGACTTCATGGATTTGTACGAAAGGCAACAAGTTCATAATATTACCGCCGGCCTTCAGTACTGGTTCTTCCCAAAGTGTCGTTTGCAGGCACAGTATGTATTGAGCAATCCrAAAGGCGAGTACAACAACACACACGCTCTGCTAACACAGGTGCAGGTAGCATTC","8.30","4.21","94373","MVLRPHYADGGTVSHTIKEIIIQQNNNDQEMKVKHLLAASLMMLGTGNICAQKSANSIFNAIKERVSLSGYAQAGFSSLWLPTASSEKENYNTFDVKRITLRANVAITDKWSVTFIPDFAKRYTNLELYTSFRTCSGFGIRLGQFKTAFSIENQLSPTTIETISCGSMATNFLAAGNGSDPLMGAQSGRDVGLEIYGDLFNDILGYRLGVLNGQGINTLDGSKHKTLEGSLTLRPIECLSFTGSFMSGKTAALNDAPIKINSKQIMAGDLYDRSRWSVGGMFRSKYLDLRSEYLEGKDDDMISKGFYVTGVGRLFKNLDIIGSYDFMDLYERQQVHNITAGLQYWFFPKCRLQAQYVLSNPKGEYNNTHALLTQVQVAF","1461474 1462610","TIGR ID: PG1382","conserved hypothetical protein","Outer membrane, Extracellular","This sequence corresponds to gi:34397381 in Genbank.Its nearest neighbor in the NR database is gi:60494012 from Bacteroides fragilis NCTC 9343.","
InterPro
IPR010870
Family
Phosphate-selective porin O and P
PF07396\"[68-379]TPorin_O_P


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","Tue Feb 6 13:37:02 MST 2001","Tue Feb 6 13:37:02 MST 2001","","","Mon Mar 7 14:11:18 2005","Mon Mar 7 14:11:18 2005","Tue Feb 6 13:37:02 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 15:49:06 MST 2001","-63% similar to PDB:1APT CRYSTALLOGRAPHIC ANALYSIS OF A PEPSTATIN ANALOGUE BINDING TO THE ASPARTYL PROTEINASE PENICILLOPEPSIN AT 1.8 ANGSTROMS RESOLUTION (E_value = );-63% similar to PDB:1APU CRYSTALLOGRAPHIC ANALYSIS OF A PEPSTATIN ANALOGUE BINDING TO THE ASPARTYL PROTEINASE PENICILLOPEPSIN AT 1.8 ANGSTROMS RESOLUTION (E_value = );-63% similar to PDB:1APV CRYSTALLOGRAPHIC ANALYSIS OF TRANSITION STATE MIMICS BOUND TO PENICILLOPEPSIN: DIFLUOROSTATINE-AND DIFLUOROSTATONE-CONTAINING PEPTIDES (E_value = );-63% similar to PDB:1APW CRYSTALLOGRAPHIC ANALYSIS OF TRANSITION STATE MIMICS BOUND TO PENICILLOPEPSIN: DIFLUOROSTATINE-AND DIFLUOROSTATONE-CONTAINING PEPTIDES (E_value = );-63% similar to PDB:1BXO ACID PROTEINASE (PENICILLOPEPSIN) (E.C.3.4.23.20) COMPLEX WITH PHOSPHONATE INHIBITOR: METHYL CYCLO[(2S)-2-[[(1R)-1-(N-(L-N-(3-METHYLBUTANOYL)VALYL-L-ASPARTYL)AMINO)-3-METHYLBUT YL] HYDROXYPHOSPHINYLOXY]-3-(3-AMINOMETHYL) PHENYLPROPANOATE (E_value = );","","","Residues 68 to 379 (E-value = 2.5e-06) place PG1213 in the Porin_O_P family which is described as Phosphate-selective porin O and P (PF07396)","Thu Mar 1 15:49:06 MST 2001","34541066","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Mon Mar 7 14:11:18 2005","","1","","","PG1382" "PG1214","1462812","1463447","636","ATGGTTGCCACTTCAATTCTATACGGTATTCTCATTGGCATTCTCGTGTCGGCTCCTATGGGGCCGATCGGAATTTTGTGTATTCGAAGGACTCTGCACAGGGGACGGCGCGATGGATTCTACACCGGTATCGGAGCCATACTTAGCGATCTCTTCTATGCCACTGTCACGTATCTGGGAATAGGTTTGGTGATGAACTTCATTGACAGCAACGAGGCTTGGCTACAGCTTCTCGGCAGTGTCGTCATGTTTCTATTCGGTATATATCTGTATCGGACTGCACCCACCTTCAAGGTGGATGATAAGGATAATAACTACTCTGTATGGCATACCGTCCTAAGCTCTTTTGGCCTTACGCTATCCAACCCTTTTATCATTTTCTTTTTTATCGCTCTATATTCCCGCTTCAACTTCGTCACCGATGTTCCGGGGAGGATGTTAGTCGGTTATACCTCCGGCATGTTAGGTATAGCTTTGGGGGCGATTGGCTGGTGGTCTCTTATCACTTATCTTTTCAGCCTGCTACGCAATCGTATCAATGTCGTTGGCATACGGTGGTTCAACCGCATCGTAGCCGTTATTTTTATGGTGATATCCGGTTTCGGATTATTCGCCGGCTTATCCGATATATTGAAA","10.50","6.41","23643","MVATSILYGILIGILVSAPMGPIGILCIRRTLHRGRRDGFYTGIGAILSDLFYATVTYLGIGLVMNFIDSNEAWLQLLGSVVMFLFGIYLYRTAPTFKVDDKDNNYSVWHTVLSSFGLTLSNPFIIFFFIALYSRFNFVTDVPGRMLVGYTSGMLGIALGAIGWWSLITYLFSLLRNRINVVGIRWFNRIVAVIFMVISGFGLFAGLSDILK","1462797 1463447","May be related to PG1210, PG1211, PG1212, ABC elements.See ABC Transporters Analysis.TIGR ID: PG1383","hypothetical protein/possible ABC element with MSD domain","Inner membrane, Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR001123
Family
Lysine exporter protein (LYSE/YGGA)
PF01810\"[14-209]TLysE


","BeTs to 4 clades of COG1280COG name: Conserved membrane proteins, YahN/YigJ familyFunctional Class: SThe phylogenetic pattern of COG1280 is a-t---vcEB-h---------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 10-159 are 29% similar to a (PROTEIN CHEMOTACTIC TRANSDUCTION CHPE) protein domain (PD190454) which is seen in P94381_BACSU.","","Thu Jun 14 11:38:10 MDT 2001","","Thu Jun 14 11:38:10 MDT 2001","Thu Jun 14 11:38:10 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:38:10 MDT 2001","Thu Jun 14 11:38:10 MDT 2001","","Fri Jun 15 22:24:27 MDT 2001","Sat Jun 2 16:16:10 MDT 2001","","Thu Mar 1 15:51:25 MST 2001","","Fri Jun 15 22:24:27 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 15:51:25 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 14 to 209 (E-value = 4.7e-07) place PG1214 in the LysE family which is described as LysE type translocator (PF01810)","Fri Jun 15 22:24:27 MDT 2001","34541067","","","","","","1","","","PG1383" "PG1215","1464183","1464959","777","ATGGAAGAGGTATCTCCCGACCACAGCACCATCAGTCGATTTCGTTCGGCACTGACAGAGTTGGGGCTCATGGACAAACTATTGGCGCAGTTTAACAAACAACTTTCCCGCCATCACATTTCGGTCAGGGAAGGGGTGCTTGTCGATGCAAGCCTTGTGGAGACGCCGCATAAACCCAACGGAAGCATTACGATTGAAGTCGCAGACGACAGAGAAGACAATCGGAGCGAGGAGGAAAAAGAGGCAGAGGAGGATTATCAAAAACAGGTTGTCCGTCAGCGTAAAGGGACGGATGAAGAAGCCCGTTGGGTTTACAAACAAAAGCGTTATCACTACGGATACAAAAAGCATTGTCTGACCAATGTTCAAGGCATTGTTCAAAAGGTGATAACGACTGCAGCGAACCGCAGTGACACGAAGGAGTTTATTGCGCTATTGCAGGGTGCAAACATACCTCAAGGCACAGCCGTCTTGGCGGACAAAGGATATGCTTGCGGGGAAAATCGTTTCTACCTGCAAACCCATCACCTTCAAGACGGCATCATGCACAAGGCACAACGCAACAGGGCATTGACCGAGGAAGAGAAGCAAGGAAACAAAGCAATCGGTCCGATACGGAGCACCATCGAACGCACCTTTGGCAGTATTCGCCGGTGGTTTCATGGCGGACGATGTCGATACCGGGGACTTGCCAAGACCCATACTCAAAACATTCTTGAAAGCATCGCCTTTAATTTATACAGAACCCCGGGGATAATTATGTCCTCATCTCTAGGA","9.80","8.52","29537","MEEVSPDHSTISRFRSALTELGLMDKLLAQFNKQLSRHHISVREGVLVDASLVETPHKPNGSITIEVADDREDNRSEEEKEAEEDYQKQVVRQRKGTDEEARWVYKQKRYHYGYKKHCLTNVQGIVQKVITTAANRSDTKEFIALLQGANIPQGTAVLADKGYACGENRFYLQTHHLQDGIMHKAQRNRALTEEEKQGNKAIGPIRSTIERTFGSIRRWFHGGRCRYRGLAKTHTQNILESIAFNLYRTPGIIMSSSLG","1464183 1464959","Member of the IS5 family of elements. Reproduces the middle and C-terminal domains of full-length ISPg1 elements (e.g. PG1662).TIGR ID: PG1384","ISPg1 transposase fragment (IS1106-related transposase)","Cytoplasm","PG1215 is equivalent to the middle to C-terminal region (residues 103-361) of the previously sequenced AB015879 in GenBANK. See also AJ130872. Residues 6-248 are 34% similar to the IS1106 from N. meningitidis (AE002488).","
InterPro
IPR002559
Domain
Transposase, IS4-like
PF01609\"[45-246]TTransposase_11


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 201-259 are 98% similar to a (TRANSPOSASE ORF7 INSERTION SEQUENCE IS1126-LIKE GENE) protein domain (PD187845) which is seen in Q9ZAD0_PORGI.Residues 55-200 are 85% similar to a (TRANSPOSASE PLASMID PROTEIN ELEMENT) protein domain (PD004652) which is seen in Q9ZA61_PORGI.Residues 8-54 are identical to a (TRANSPOSASE ORF7 INSERTION SEQUENCE) protein domain (PD187846) which is seen in Q9ZA61_PORGI.","","","","","","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","","","","Mon Jun 25 12:29:58 MDT 2001","Fri Feb 16 12:07:06 MST 2001","Mon Jun 25 12:29:58 MDT 2001","Wed Jan 3 12:19:20 2001","","Mon Jun 25 12:29:58 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1215 is virtually identical to PG1087, PG0763, PG1755, PG0686, PG0756, PG1798, PG1230, PG1919, PG0044, PG0689, PG1184, PG1665, PG0839, PG1895, all ISPg1 fragments that reproduce the middle and C-terminal residues of PG1267, PG0169, PG1050, PG1062, PG0740, PG0918, PG1662, PG1422, PG0420, PG0499, PG1099.Also, partial similarities to PG0732, PG0842, PG0883, PG1231, PG0730, PG1159, PG1608.","Fri Feb 16 12:07:06 MST 2001","Thu Jun 14 11:38:20 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 45 to 246 (E-value = 4.1e-36) place PG1215 in the Transposase_11 family which is described as Transposase DDE domain (PF01609)","Mon Jun 25 12:29:58 MDT 2001","","","Hanley,S.A., Aduse-Opoku,J. and Curtis,M.A.A 55-kilodalton immunodominant antigen of Porphyromonas gingivalisW50 has arisen via horizontal gene transferInfect. Immun. 67 (3), 1157-1171 (1999)Maley,J. and Roberts,I.S.Characterisation of IS1126 from Porphyromonas gingivalis W83: a new member of the IS4 family of insertion sequence elementsMicrobiol. Lett. 123 (1-2), 219-224 (1994)Shibata,Y., Hayakawa,M., Takiguchi,H., Shiroza,T. and Abiko,Y.Determination and characterization of the hemagglutinin-associatedshort motifs found in Porphyromonas gingivalis multiple geneproducts. J. Biol. Chem. 274 (8), 5012-5020 (1999)","Knight,A.I., Ni,H., Cartwright,K.A. and McFadden,J.J.Identification and characterization of a novel insertion sequence, IS1106, downstream of the porA gene in B15 Neisseria meningitidis.Mol. Microbiol. 6 (11), 1565-1573 (1992)","Wed Feb 14 11:40:21 MST 2001","Wed Feb 14 11:40:21 MST 2001","1","","25","PG1384" "PG1216","1466428","1465229","1200","ATGAACAAGAAAAGTTTATTGGCAGCTGTCCTGTTTGCAGCAGTTATGCCGGTTTCCTTTGCCCAAAATGCCAATGTGAAAGGAGCAGAAAGCCTTTCCGGTGGTTCCAAACCGAACTTTCCCGAAGCTCGTACGCTGATCGGTGAAGCCATGAAGAACCCCGAGACGATGAACGATGCCAAGACTTGGTTTGTGGCCGGTCAGGTGGAAGAGAGACTCTTTACATCAGAGAATCTCAAGCAAACTGTGAATCAGGAGCCGGATCGTGCTATGATGAACGATGCTTTGCTGCGCATTTTGCCGTTTTATTTGAAGGCCGACCAGTTGGACAATATGCCTGATCAAAAGGGTAAGGTAAAGCCCAAGTTCACAAAGAAGATCATGGAATCTCTCAAGGGTAATCATCTTTACTATATCAATGCCGGTGGTTACTACATGGAGAAGAAAGACTATAAGAAAGCTCTCGAAGCCTTCGATCAGTTCATGCAAATCAAGGAGCTGCCGATGTTTGCTGCTGTTCCCGAAATCTCTGCACAGGATTCCAACTCTATGATGGTAGGGTTCTTCTCGGCGGTTTGTGCCTATCAGGCCAATGACTTGGACAGAACGCTCGAGATCTGTAACAAGATCAAGGATGTTCCCTATCGTCAGAACGACGTGTATCAGCTGATCGCTACGGTATATCAGGACAAAAAAGATACAGAGGGCTATATCCGGATGCTGGAGGAAGGTGTACAGAAGTTCCCGAAGGAAGCTTACTATCTGCTCAACCTGATCAACAAATACATCGAAACCGGTCGTACGGAAGAAGCCATTTCTTCATTGGAAAGGGCTATTGCGGACGATCCTCAGAATGTACAGCTTTACGACGTGATGGCCAAGTTGTATGAGAATACGCAAGACTATGACAAAGCCGAGGAGTGGCTGAAGAAAGGTTTGGCTCTTGATCCTGACAATGCTTCCGTATGCTACGATTTGGGTCGTGTGTATTACAACCGCGCTGCCGATTTGAAGGGGGCCGATCAGGTGAATGCTGAGACAGAAGCCAAAGCCAAGGAATATCTGCAGAAGGCCTTGCCCCTGCTCGAAAAGGCTTATTCGATCAATCCGGACGAATCATGGTATGTACTGCGTAATGTGTACTACAACTTGAAGATGAACGATAAGTACAAAGAGCTGACAGAGCGTCACGAAGGAAAA","5.20","-6.62","45799","MNKKSLLAAVLFAAVMPVSFAQNANVKGAESLSGGSKPNFPEARTLIGEAMKNPETMNDAKTWFVAGQVEERLFTSENLKQTVNQEPDRAMMNDALLRILPFYLKADQLDNMPDQKGKVKPKFTKKIMESLKGNHLYYINAGGYYMEKKDYKKALEAFDQFMQIKELPMFAAVPEISAQDSNSMMVGFFSAVCAYQANDLDRTLEICNKIKDVPYRQNDVYQLIATVYQDKKDTEGYIRMLEEGVQKFPKEAYYLLNLINKYIETGRTEEAISSLERAIADDPQNVQLYDVMAKLYENTQDYDKAEEWLKKGLALDPDNASVCYDLGRVYYNRAADLKGADQVNAETEAKAKEYLQKALPLLEKAYSINPDESWYVLRNVYYNLKMNDKYKELTERHEGK","1466428 1465229","MD Conserved hypo with tetratricopeptide repeats.TIGR ID: PG1385","conserved hypothetical protein","Periplasm","Three weak hits in gapped BLAST; e.g. residues 214-316 are 32% similar to gb|AAF59647.1| contains similarity to TR:O74985 of Caenorhabditis elegans, residues 145-311 are 25% similar to gb|AAC07708.1| hypothetical protein of Aquifex aeolicus, residues 219-386 are 25% similar to emb|CAC23862.1| Hypothetical (glycosyl transferase) of Sulfolobus solfataricus.","
InterPro
IPR001440
Repeat
Tetratricopeptide TPR_1
PF00515\"[135-168]T\"[252-285]TTPR_1
InterPro
IPR011990
Domain
Tetratricopeptide-like helical
G3DSA:1.25.40.10\"[125-391]TTPR-like_helical
InterPro
IPR013026
Domain
Tetratricopeptide region
SM00028\"[135-168]T\"[252-285]T\"[286-319]TTPR
PS50005\"[135-168]T\"[218-251]T\"[252-285]T\"[286-319]TTPR
PS50293\"[135-168]T\"[218-319]TTPR_REGION
InterPro
IPR013105
Repeat
Tetratricopeptide TPR_2
PF07719\"[286-319]TTPR_2
noIPR
unintegrated
unintegrated
PTHR23083\"[123-168]T\"[184-335]T\"[355-396]TPTHR23083
SSF48452\"[133-397]TSSF48452


","BeTs to 13 clades of COG0457COG name: TPR-repeat-containing proteinsFunctional Class: RThe phylogenetic pattern of COG0457 is AMTKYQVCEB-HUJ--OLINXNumber of proteins in this genome belonging to this COG is 21","No significant hit to the Blocks database.","Residues 145-311 are 25% similar to a (PROTEIN REPEAT TPR DOMAIN NUCLEAR PUTATIVE RECEPTOR) protein domain (PD000069) which is seen in O67735_AQUAE.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Thu Mar 15 13:30:54 MST 2001","Thu Mar 1 16:00:38 MST 2001","Thu Mar 1 16:00:38 MST 2001","Thu Mar 1 16:00:38 MST 2001","","Thu Mar 1 16:00:38 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 16:00:38 MST 2001","-50% similar to PDB:2FO7 Crystal structure of an 8 repeat consensus TPR superhelix (trigonal crystal form) (E_value = 6.0E_13);-51% similar to PDB:1NA0 Design of Stable alpha-Helical Arrays from an Idealized TPR Motif (E_value = 1.9E_11);","","","Residues 286 to 319 (E-value = 7.1e-05) place PG1216 in the TPR family which is described as TPR Domain (PF00515)","Thu Mar 15 13:30:54 MST 2001","34541068","","","","","","1","","25","PG1385" "PG1217","1469041","1466465","2577","ATGACTGATCGAGAAGACAGAATTATTAACATCAGCATCGAGGAGGAAATGAAGACCGCCTACATCGACTATTCGATGTCGGTGATCGTCTCCAGAGCTTTGCCTGATGTCCGCGACGGATTCAAGCCGGTTCATCGCCGTGTGCTGTATGCCATGAACGAAACCGGCAATGTGTACACCAATCCCACTCGCAAATGCGCCAATGCTGTCGGCGAGGTGCTGGGACACTATCACCCGCATGGCGACTCTTCCGTTTATATGGCCTTGGTGCGTATGGCACAGCCGTGGAGCCTGCGCTATCCGTTGGTGGACGGTCAGGGCAACTTCGGTTCGGTGGATGGCGATTCGCCTGCTGCCATGCGTTATACCGAGTCGCGCCTCAGCAGGATTGCCGGTGAGATGCTTCAGGACATAGATAAGGAAACGGTAGACTTCCAGAACAATTTCGATGATACACGTCAGGAGCCTACGGTTCTGCCGACACGCATTCCGAACCTCCTCATAAACGGGGCTTCCGGTATTGCTGTCGGTATGGCTACCAATATGCCTCCCCACAATTTGTCCGAAGCTATTGACGGATGTGTGGCGTACATCGAAGCAGATGGCGACATAGACGTGGAGGGCTTGATGCAGTATGTCAAGGCTCCGGATTTCCCCACAGGAGGATTCATATACGGCTATTCCGGAGTGAAGGAAGCCTTCGAGACGGGACGAGGCCGTGTCGTTATCAGAAGTCGTGCCGAGATCGAGCAGCACAATAACCACGAGCGGATCATCATCACGGAGATTCCCTATCTGGTCAATAAGGCTGAGCTTGTCTCCAACATTGCACAGCTGATCAACGAGAAGCGTCTGGATGGTATTTCCAATATATCGGACGAATCGAACCGTAAGGGCATGCGGATCGTCGTAGAGATCAAGCGCGATGCCAATGCTTCGGTCGTGCTCAACAAGCTCTACAAGATGACAGCCTTGCAAAGCTCTTTCAGCGTAAACAATATCGCCTTGGTCAAGGGACGTCCCCGCCTGCTCAATCTGAAAGATCTCATTGGGGAATTTGTGGATCATCGTCAGGAGGTAGTGACACGCCGTTGTCGTTTCGAATTGCGTAAGGCACGGGAGCGTGCTCATATCCTCGAAGGCTTGCTTATAGCCGTAGACAACATCGACGAAGTAATCTCTATCATCCGTTCCTCCAAAGACGCCGCAGAGGCTATGAGCCGCTTGATAGAGCGTTTCGATCTCTCGGATATCCAGGCACGTTCCATTGTAGATATGCGTCTGCGTGCCCTGACGGGATTGGAGCGCGACAAGCTGCGTGCAGAGTTCGAAGAGATCATGGCCTCCATCAATCATTTGGAAGCTCTTTTGGCTGATAGAGCATTACTGATGGAGCTGGTCAAAAGCGAACTGCTGGAGATAAAAGAGAAATATGGCGATACTCGCAAAAGCGAGATCATATATGCTTCGGAAGAATTCAACCCCGAAGACTTCTATGCCGACGATGATATGATCATCACCCTTTCGCACATGGGCTACATCAAGCGTACCCCTCTGAGCGAATTCAGAACGCAGGCTCGTGGCGGAGTAGGAGCCAAGGGATCGGATACTCGCGAAGAAGATTTCGTGGAGTATATCTACTCGGCCTCCATGCACGCCACCATTATGCTGTTCACGGCCAAGGGGCGTTGCTATTGGCTGAAGGTGTATGAAATCCCCGAAGGTGCCAAGAATGCCAAAGGACGAGCTATTCAGAATCTCCTTAATATCGATCCCGACGATAAGGTCAATGCCTTTATCCGTATCAAGAACCTGACGACGGACAAGGAGTTTGTCAATAGCCACTATCTCCTCTTCTGTACCAAGAGAGGAATCATCAAGAAGACATTGCTCGAAGCTTTCTCCCGTCCGCGTGCCAATGGTGTGATCGCTATCGACCTGCGAGACAACGATGGCTTGGTAAGTGTCCGATTGACCAATGGTAAATGCGACATGGTTATTGCCAATCGCGGTGGACGTGCCATTCGTTTCCATGAATCCGTGGTTCGTCCTTCGGGTCGTACAGCCATGGGAGTAAAGGGAATGACGCTCGACGATGATGGTCAGGACGAAGTAGTAGGAATGATCTCTATCAAGCATCCGGAAGAAGAGACCATTCTGGTAGTAAGTGAAAAGGGATACGGCAAGCGTTCTAATATCGACGACTATCGTATTACCAATCGCGGTGGTAAAGGGGTGAAGACACTGAATATCACCGAGAAGACCGGAAAGCTGGTCGATATTCGAGCCGTTACCGATGCCAACGACCTTATGATCATCAATAAGAGCGGTGTCGCCATCCGGGTAAAAGTGGCTGATCTGAGCATTATCGGTCGAGCTACACAAGGTGTTAAGCTCATTGATTTGTCCAAGCGGGGTGACGAGATCGCTTCCGTTTGTAGTGTAGTCTCCGAGGAAGAAGAAAACAAGGCAGAAGAGCATGCCGATCATACTCACGAAGTTTTGCCGCAAGACGACTCTTCCTCATCTGTAGAAAATGGTGATGTCAGTGATATGACTGATGCTATCGAACCAGAA","5.50","-17.87","95995","MTDREDRIINISIEEEMKTAYIDYSMSVIVSRALPDVRDGFKPVHRRVLYAMNETGNVYTNPTRKCANAVGEVLGHYHPHGDSSVYMALVRMAQPWSLRYPLVDGQGNFGSVDGDSPAAMRYTESRLSRIAGEMLQDIDKETVDFQNNFDDTRQEPTVLPTRIPNLLINGASGIAVGMATNMPPHNLSEAIDGCVAYIEADGDIDVEGLMQYVKAPDFPTGGFIYGYSGVKEAFETGRGRVVIRSRAEIEQHNNHERIIITEIPYLVNKAELVSNIAQLINEKRLDGISNISDESNRKGMRIVVEIKRDANASVVLNKLYKMTALQSSFSVNNIALVKGRPRLLNLKDLIGEFVDHRQEVVTRRCRFELRKARERAHILEGLLIAVDNIDEVISIIRSSKDAAEAMSRLIERFDLSDIQARSIVDMRLRALTGLERDKLRAEFEEIMASINHLEALLADRALLMELVKSELLEIKEKYGDTRKSEIIYASEEFNPEDFYADDDMIITLSHMGYIKRTPLSEFRTQARGGVGAKGSDTREEDFVEYIYSASMHATIMLFTAKGRCYWLKVYEIPEGAKNAKGRAIQNLLNIDPDDKVNAFIRIKNLTTDKEFVNSHYLLFCTKRGIIKKTLLEAFSRPRANGVIAIDLRDNDGLVSVRLTNGKCDMVIANRGGRAIRFHESVVRPSGRTAMGVKGMTLDDDGQDEVVGMISIKHPEEETILVVSEKGYGKRSNIDDYRITNRGGKGVKTLNITEKTGKLVDIRAVTDANDLMIINKSGVAIRVKVADLSIIGRATQGVKLIDLSKRGDEIASVCSVVSEEEENKAEEHADHTHEVLPQDDSSSSVENGDVSDMTDAIEPE","1469041 1466465","PG0339 and PG1483 are both subunit B of DNA gyrase, while PG1419 is another copy of subunit A.TIGR ID: PG1386","DNA gyrase subunit A (topoisomerase)","Cytoplasm","This sequence is orthologous to CT189, a predicted DNA topoisomerase subunit A (E value 0.0), and to BT0899.Numerous significant hits to DNA gyrase subunit A in gapped BLAST; e.g. residues 5-809 are 70% similar to dbj|BAA84772.1| DNA gyrase A subunit of Bacteroides fragilis, residues 5-810 are 53% similar to dbj|BAB03726.1| DNA gyrase subunit A of Bacillus halodurans, residues 5-802 are 52% similar to gb|AAA73952.1| DNA gyrase A subunit of Staphylococcus aureus.","
InterPro
IPR002205
Domain
DNA topoisomerase, type IIA, subunit A or C-terminal
PD000742\"[47-122]TDNA_topoisoIV
PF00521\"[32-479]TDNA_topoisoIV
SM00434\"[11-464]TTOP4c
InterPro
IPR005743
Family
DNA gyrase, subunit A
TIGR01063\"[8-817]TgyrA
InterPro
IPR006691
Repeat
DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel
PF03989\"[502-551]T\"[552-604]T\"[614-661]T\"[662-713]T\"[716-766]T\"[767-817]TDNA_gyraseA_C
InterPro
IPR013757
Domain
DNA topoisomerase, type IIA, subunit A, alpha-helical
G3DSA:1.10.268.10\"[369-458]TTopo_IIA_A_a
InterPro
IPR013758
Domain
DNA topoisomerase, type IIA, subunit A or C-terminal, alpha-beta
G3DSA:3.90.199.10\"[30-296]TTopo_IIA_A/C_ab
InterPro
IPR013760
Domain
DNA topoisomerase, type IIA, central
SSF56719\"[6-490]TTopo_IIA_cen
noIPR
unintegrated
unintegrated
PTHR10169\"[4-192]TPTHR10169
PTHR10169:SF2\"[4-192]TPTHR10169:SF2
SSF101904\"[502-815]TSSF101904


","BeTs to 14 clades of COG0188COG name: DNA gyrase (topoisomerase II) A subunitFunctional Class: LThe phylogenetic pattern of COG0188 is a---yqvCEBrHujGPOlINXNumber of proteins in this genome belonging to this COG is 2","***** PF00521 (DNA gyrase/topoisomerase IV, subunit A) with a combined E-value of 1.5e-231. PF00521A 21-52 PF00521B 74-123 PF00521C 124-163 PF00521D 164-189 PF00521E 213-224 PF00521F 258-288 PF00521G 293-342 PF00521H 360-397 PF00521I 413-446","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Tue Mar 26 15:35:37 2002","Tue Mar 21 13:58:21 MST 2000","Thu Dec 4 10:01:31 2003","Tue Mar 26 15:35:37 2002","Thu Mar 1 16:19:07 MST 2001","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 21-375 are 32% similar to PG1419, a predicted DNA gyrase subunit A (topoisomerase).","Thu Mar 1 16:19:07 MST 2001","Thu Mar 1 16:19:07 MST 2001","-71% similar to PDB:1AB4 59KDA FRAGMENT OF GYRASE A FROM E. COLI (E_value = 9.0E_148);-68% similar to PDB:2NOV Breakage-reunion domain of S.pneumoniae topo IV: crystal structure of a gram-positive quinolone target (E_value = 7.0E_124);-55% similar to PDB:1ZVU Structure of the full-length E. coli ParC subunit (E_value = 1.6E_96);-62% similar to PDB:1ZI0 A Superhelical Spiral in Escherichia coli DNA Gyrase A C-terminal Domain Imparts Unidirectional Supercoiling Bias (E_value = 2.1E_56);-51% similar to PDB:1SUU Structure of DNA gyrase A C-terminal domain (E_value = 1.8E_31);","","","Residues 32 to 479 (E-value = 3.4e-283) place PG1217 in the DNA_topoisoIV family which is described as DNA gyrase/topoisomerase IV, subunit A (PF00521)Residues 502 to 551 (E-value = 6.5e-12) place PG1217 in the DNA_gyraseA_C family which is described as DNA gyrase C-terminal domain, beta-propeller (PF03989)Residues 552 to 604 (E-value = 3.1e-13) place PG1217 in the DNA_gyraseA_C family which is described as DNA gyrase C-terminal domain, beta-propeller (PF03989)Residues 614 to 661 (E-value = 6.2e-11) place PG1217 in the DNA_gyraseA_C family which is described as DNA gyrase C-terminal domain, beta-propeller (PF03989)Residues 662 to 713 (E-value = 7.5e-11) place PG1217 in the DNA_gyraseA_C family which is described as DNA gyrase C-terminal domain, beta-propeller (PF03989)Residues 716 to 766 (E-value = 9.8e-16) place PG1217 in the DNA_gyraseA_C family which is described as DNA gyrase C-terminal domain, beta-propeller (PF03989)Residues 767 to 817 (E-value = 2.6e-11) place PG1217 in the DNA_gyraseA_C family which is described as DNA gyrase C-terminal domain, beta-propeller (PF03989)","Thu Dec 4 10:01:31 2003","34541069","","","Onodera,Y. and Sato,K. 1999. Molecular cloning of the gyrA and gyrB genes of Bacteroides fragilis encoding DNA gyrase. Antimicrob. Agents Chemother. 43 (10): 2423-2429. PubMed: 10508019.","","Thu Mar 1 16:19:07 MST 2001","1","","25","PG1386" "PG1218","1470151","1469228","924","ATGGAAGTATCGAAGAAGAGGCTCGTCCTGATGGGGGTTGCCGTACTCGTTCTTATTGTATTCATAGGGGTTTTCTTCAATTGGCGTGTGGTTCGCGAACGTGCTGCTCTGGAACAGGATCGCGAGAACTTTGCCAAGCTCGAAAAGGAGGCCATGCAGGATGAACTGGATCGTATATCCGAGGACTATACGCAGCAGTACAACAAGCTCTCCGGCTCTACGGGAGAAATGAATATCCAATTGGCCAACGATTCCCTTCTGGCACAACTCTCCGCCGAGCGTGCCCGCGTCAATCGATTGCAGGACGAATTGAAAACAGTCAAGACGACCAATGCACGCAGGATAAACGAGCTGAGAGGAGAGGTCAAGACCCTTCGTGCCATACTGAAGTCGTATGTCGTGCAGATCGACTCCCTCAATGCAGCCAATGCCCGTCTCCGAACGGAGAATCAGGAGGTGAAGCGCAACCTCTCCGAGGCCGTGGGCGAAGCCAGTCGTCTGAAAGTGGAGAAAGCCGAACTGACCGGAAAGGTGGAGCTGGCATCGAAACTGGAGGCTACCGGCATATCGGTGGCTTTGCTCGACAAGAAAGGCCGTTCGACCCAAAAGGTGACGAAGATCAAGAACATTCAGATGAGCTTTGTCATTCCCAAGAACATTACGGCTCCCGTGGGAGAGAAAGCCATTTACGCCCGTATCCTCACTCCGAGCGACGATGTGCTCCAAAAATCCTCTGCCGACGTTTTCGCCTTCGAAGGCAAGCAGATCGGCTACTCCTGTCGCAAGCAAATAGAATATACCGGAGAGCAGACCGATGTGATCCTCTACTGGAATGTGGGAGAAACCCTGATGCCCGGAGCTTATCGGGTCGATTTCTTTGCCGATGGGCATCTGATCGGACGCAAAGGCTTCAGCTTGGGCGAA","10.00","6.22","34551","MEVSKKRLVLMGVAVLVLIVFIGVFFNWRVVRERAALEQDRENFAKLEKEAMQDELDRISEDYTQQYNKLSGSTGEMNIQLANDSLLAQLSAERARVNRLQDELKTVKTTNARRINELRGEVKTLRAILKSYVVQIDSLNAANARLRTENQEVKRNLSEAVGEASRLKVEKAELTGKVELASKLEATGISVALLDKKGRSTQKVTKIKNIQMSFVIPKNITAPVGEKAIYARILTPSDDVLQKSSADVFAFEGKQIGYSCRKQIEYTGEQTDVILYWNVGETLMPGAYRVDFFADGHLIGRKGFSLGE","1470151 1469228 [Shadowed by 1568]","TIGR ID: PG1387","conserved hypothetical protein","Cytoplasm, Outer membrane, Inner membrane","No significant hit found in gapped BLAST with E value less than e-04.","
noIPR
unintegrated
unintegrated
signalp\"[1-37]?signal-peptide
tmhmm\"[9-29]?transmembrane_regions


","BeTs to 5 clades of COG1196COG name: Chromosome segregation ATPasesFunctional Class: DThe phylogenetic pattern of COG1196 is am-kYqvc-br---gpol---Number of proteins in this genome belonging to this COG is 4","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Fri Sep 10 17:27:25 2004","","Mon Mar 5 08:59:08 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Sep 10 17:27:25 2004","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Mar 5 08:59:08 MST 2001","34541070","","","","","","1","","25","PG1387" "PG1220","1470982","1470191","792","ATGGATCCTCCGGTTTGTAGTCCTTGGGGCCGATTCGGGTGCTATTTGCTGCTTTTTGCGTGTCCGATTATCTTTGCAAGCATAATGAAGAAGGAATTTATCGGTCGGACAGCCAAGTCGCTGAGTCTGGCCCTCGCCATTTTTTCAGGATGTATATTCGGCAGTGTGTTGCCTGCATGGTCGCAGGAGATTGTGGCAGGCGAACTGGAGCGTTGCTTCTTGGCCATGCCCGAATCCGTCCTGCCGATCGTAACCATGGAGGAGCGGAACGATTTGTGCCGGAGGGCAGGCCATCTCTCCGGCTTTACCCATACGGCATCTCTGGAGTCTTCTCTGGGAGGTACCGTTACGTTTCTCCTCAATCGGAACTTTATCAGGATTCAGACCAGTACCGTCGGAGAGGTGTTTATGCGCATCCTGCCCTTTTCGGATAGCAGCTCCGTCATCTGCGTGGTCACCACCGTCTTGCACCCCGTGGCGGATAGCCGGATCGATTTCTACACCACCGAATGGAAGCCGCTCAAGACCGACCGCTTTTGGCAGCAACCTCGGATAGAGGATTTTTTCCTCCCCCATACGGACAGGCAGTCGTATGCCTATCAGGCCATATATGCAAGTCTGACGCCGTCTTATATGCAGGTGTCGCTCTCGGAAGAGTCGGATACACTCTCCATCCGCCAAACCGTGACAGAGACCTTGGCAGAGGAGGAGAAACCGCTTGCGGCAATTTTTCTTTCACCCGAACCGTTGGTCTATCGTTGGCAGTCCGGACGATTCGTTCGGCAGGTTCGA","6.10","-2.36","29830","MDPPVCSPWGRFGCYLLLFACPIIFASIMKKEFIGRTAKSLSLALAIFSGCIFGSVLPAWSQEIVAGELERCFLAMPESVLPIVTMEERNDLCRRAGHLSGFTHTASLESSLGGTVTFLLNRNFIRIQTSTVGEVFMRILPFSDSSSVICVVTTVLHPVADSRIDFYTTEWKPLKTDRFWQQPRIEDFFLPHTDRQSYAYQAIYASLTPSYMQVSLSEESDTLSIRQTVTETLAEEEKPLAAIFLSPEPLVYRWQSGRFVRQVR","1470982 1470191","TIGR ID: PG1388","hypothetical protein","Inner membrane, Cytoplasm","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-26]?signal-peptide
tmhmm\"[14-29]?\"[41-61]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","","Mon Mar 5 09:10:26 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Mar 5 09:10:26 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Mar 5 09:10:26 MST 2001","34541071","","","","","","1","","25","PG1388" "PG1221","1471421","1470966","456","ATGATACAGTACACAGTGAAGGAACGCCGAATGAAAGTAGGCAAGCATGCAGGCAAAACGATGTATTATGCCGAGGCTCAGAAATCGAAAGTGATTGACTTTGAAGAGGTGATCAGGGACGTTGCCGAGATGAGTTCGCTCACGACCGGCGATGTGCGCAATGCCGTGGATCGACTGGCCTATTACCTCAAGCGCGAGTTGACAGAGGGCAATACCGTCAGGCTCGGACAGATCGGGACTTTTCGGCTTTATGCCCCCGGGCGGTTTATGGAGCATCCCGAAGAGGTCAATGCCACGACGATCAAGGGCGCGAAGATTCAGTTCATACAGAACAGGCATCTGCGCGAAGCCTCTTCTTTGATCAAGGTGGCGGTGGACAATCCCTATCTGACCAAGAAGAAAGATCTCACTGCCACCGGCACGGAGTCGGCCGAGGGCGATGGATCCTCCGGTTTG","10.10","4.72","17032","MIQYTVKERRMKVGKHAGKTMYYAEAQKSKVIDFEEVIRDVAEMSSLTTGDVRNAVDRLAYYLKRELTEGNTVRLGQIGTFRLYAPGRFMEHPEEVNATTIKGAKIQFIQNRHLREASSLIKVAVDNPYLTKKKDLTATGTESAEGDGSSGL","1471484 1470966","TIGR ID: PG1389","conserved hypothetical protein","Cytoplasm","One weak significant hit using gapped BLAST. Residues 4-108 are 28% similar to (AF285774) an unknown protein from Bacteroides fragilis.","
InterPro
IPR005902
Family
Putative DNA-binding protein, HU-related
TIGR01201\"[1-152]THU_rel
InterPro
IPR010992
Family
IHF-like DNA-binding
SSF47729\"[31-124]TIHF_like_DNA_bnd


","BeTs to 3 clades of COG0776COG name: Histone-like DNA-binding proteinFunctional Class: LThe phylogenetic pattern of COG0776 is -----QvcEBrHujgpolinXNumber of proteins in this genome belonging to this COG is 3","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 11:40:00 MDT 2001","","Thu Jun 14 11:40:00 MDT 2001","Thu Jun 14 11:40:00 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:40:00 MDT 2001","Thu Jun 14 11:40:00 MDT 2001","","","Mon Jun 25 13:11:53 MDT 2001","Mon Jun 25 13:11:16 MDT 2001","Mon Mar 5 09:21:47 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1-151 are 54% similar to PG0200, a hypothetical protein. Similarities are also seen to PG0306, PG1781, PG1882, PG0764, PG0502, PG1124, PG0511, many of which are conserved hypothetical proteins.","Mon Jun 25 13:11:16 MDT 2001","Mon Mar 5 09:21:47 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jun 25 13:11:16 MDT 2001","34541072","","","","","","1","","25","PG1389" "PG1222","1471813","1473021","1209","ATGATACGAAAGGGAGCTATCGGAAGACTGCTCAGTCGGTACCGAGAGGAAGCCGTTCTATGCTGCATACTCAGCCTGCTATACGGAGCACTGACAATGCACATCGCATCCACCGGACTGTTGACACCACACGACGGACTCATCGGTGCATATCTGGGCTATGACAACTACTATCGCTTCGAAACGGCAGGAGGTGTCTTCGACATAAGCCATCCCTTCCTGAACCTCTTCTATGTCCTCAATCGGTTCGGATTCGTCACAATCGGAGGAGAGAGCTTAGCCCTCGGCATTTGTCTGACCTTGATGACGTTGTGCACGGCAGCAGGCGTAACGGCCACCTACGCCTATCTCCGCCGCGTGGCGGGTCAGGGACGGACGAGGAGCCTGCTCGTCACCCTCTTGTCGGCCGGCAGCTTCACAGCCCTTACCCTGCCGTTCACTATCGAGAGCTATCCACTCTCGTTCTTCCTGCTTCCCCTTTCCATCACTGTACTGTCGGTTCGGTACAAGATGCGTGGAAGTTTCGGCGGAGTCACCATTCGCTGGTTTGCCTTTCTGCTGGGAGGAATCACCCTGACCAACGTGGCCAAACCGGCCTTGGCTTTCCTTTTGGAAAAAGGGACGATAGGCTCGCGAATCAGGAAAGGAGCAGCTTTGGCAGGAGCTTTCTCGCTCACCGTCCTGCTGATCGGCCTGCTCTTCACCTATCGGGCGGCCAAACAGGGACAACCCGAGAACGATCCGCGTACGCTGGCCATCCGCATGTTCGACTTCCGGCAGGGAGCCGACGAATCGGTAGCCGAATACTTCGGCCATCCGCTCCTGATCAGCGATCTGGCTCCGGCGCGCCGATACGAAGAGACCACCCTGCGCCCTACTCCCTATCGCCGGCCCTGGTCGTATATCGTGCCGCTGCTTTTCCTCTCGACGGTTGTCGCCGCCCCCTTGCTGAGGCGAAGGGAAAAGCTCGTTTGGCTGCTGCTCCTATATCTGTCAGTGGATATAGGGGTCAATGTGATCGGAGGATACGGGATGAACGAAGCGGTGATATTCGGAGGACATTGGGTCTTTCTCTGGCCTATGTTGTTGGGATGGATTTACCGGTCGATCCCTCGGAAAGCCTACCGCCCGATGGATATGGCAGTCTTCCTGTTTGCAGCCGTGCAGACGGTGCACAACCTCTCGGTCATACTGCTGCGCCTGCATCTC","10.70","18.49","44760","MIRKGAIGRLLSRYREEAVLCCILSLLYGALTMHIASTGLLTPHDGLIGAYLGYDNYYRFETAGGVFDISHPFLNLFYVLNRFGFVTIGGESLALGICLTLMTLCTAAGVTATYAYLRRVAGQGRTRSLLVTLLSAGSFTALTLPFTIESYPLSFFLLPLSITVLSVRYKMRGSFGGVTIRWFAFLLGGITLTNVAKPALAFLLEKGTIGSRIRKGAALAGAFSLTVLLIGLLFTYRAAKQGQPENDPRTLAIRMFDFRQGADESVAEYFGHPLLISDLAPARRYEETTLRPTPYRRPWSYIVPLLFLSTVVAAPLLRRREKLVWLLLLYLSVDIGVNVIGGYGMNEAVIFGGHWVFLWPMLLGWIYRSIPRKAYRPMDMAVFLFAAVQTVHNLSVILLRLHL","1471813 1473021","TIGR ID: PG1391","hypothetical protein","Inner membrane, Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
noIPR
unintegrated
unintegrated
signalp\"[1-32]?signal-peptide
tmhmm\"[21-41]?\"[83-117]?\"[126-146]?\"[152-167]?\"[182-202]?\"[216-236]?\"[323-343]?\"[349-367]?\"[382-402]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","","Mon Mar 5 09:42:38 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Mar 5 09:42:38 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Mar 5 09:42:38 MST 2001","34541073","","","","","","1","","25","PG1391" "PG1223","1474509","1473055","1455","ATGTCTTTTAAGAGAGATCGAGGCGATTATAAGGGACGGATCGATTGGTTTACCATCATTCTGTATCTGCTGCTCGTCGTGGCCGGTTGGTTTGCTGTCTGCGGAGCAAGTTACGACTTCGACATATCCCACCTTTTCATGATGGGCGGTCGTCCGATGATGCAGCTCCTGTGGATCGGTCTCGCGGTGGTGATAGGCTTTATGGTTCTGCTCATGGAGACGGATATTTTCGAGTCGCTGGCTCCCGTCTTCTATGCCGCCATGTTGGGGCTTTTGGCTCTGACCATACTGATAGCTCCGGATATAAAAGGCTCGCATTCGTGGCTGGTGATAGGACCGTTGCGACTCCAGCCGGCCGAATTTGCGAAGGTGACTACAGCCCTCTTCCTGGCATGGAAGCTGAATCAGAACGACTTCGTCCTGCGGGGAATGAAGGCCTATGCCTCCACTTTTGCCATTATCCTCATCCCCGTACTGCTTATCCTGATGCAGAACGAAACGGGGTCTGCCCTCGTCTATATAGCTTTTTTCCTTGCCCTCTATCGTGAGGGAATGTCCGGCGTATTCATCGGCATTGCCTTCTGTGCCGTCCTCTTTTTCGTCACGGCTCTGAAGTTGCAGGGCGATGTGTGGTGGGGACATACGGATGCCGCCGAATGGTCTGTGGTCTCGATGGCTTTTGTGATAGGATTCTTCCTCGTGCGGATCTATACCAAGGAGCGAGGACGCTTCTATGTCGTGGCGGCAGGGCTTACTGCTGTCACCTATGCCGTAGCCATAGTGCTGTCGTACTTCGTGTCGGTGGATTTTGTCCTCGTGGCATACGGTCTCTTGGCAGCATTGATCGTATGGGCTTTGTCAATGGCCATCAAGCGGTATGTACTGTCGTATGCGCTGATAGCCGTTTTCGCCTTGTGTTCGGTGGGCTACTTCTATTCGGTGGACTATGTATTCAACAAAGTGATGCAGCCCCACCAGCAGATGCGTATCAGGGTTGCCTTGGGAATAGAGGACGATTTGCGGGGAGGAGGATACAATGTAGACCAGTCCAAGATAGCTATCGGCTCGGGCGGATTTATGGGCAAGGGTTTCCTGAAAGGGACACAGACCAAACTGAAATATGTGCCCGAGCAGGATACGGACTTTATCTTCTGTACCGTGGGCGAAGAGCAGGGTTTCTTAGGCTCCGTGCTGCTGCTGATCGGCTATGCCACGCTGATCATACGGATCGTTGCATTGGCGGAGCGTCAGACCAAAGTCTTCTCGCGAGTCTATGGCCATAGCGTGGCGGCCATATTGCTCTTCCACCTCTCGATCAATGTCGGGATGGTGATCGGCCTGGTACCCGTTATCGGTATTCCCCTTCCCTTTTTCAGCTATGGAGGATCTTCTCTTTGGGGCTTTACCCTGTTGATCTTCATCTTTCTCCGGCTCGATGCCGACCGAGACTGCCGG","8.60","5.21","53804","MSFKRDRGDYKGRIDWFTIILYLLLVVAGWFAVCGASYDFDISHLFMMGGRPMMQLLWIGLAVVIGFMVLLMETDIFESLAPVFYAAMLGLLALTILIAPDIKGSHSWLVIGPLRLQPAEFAKVTTALFLAWKLNQNDFVLRGMKAYASTFAIILIPVLLILMQNETGSALVYIAFFLALYREGMSGVFIGIAFCAVLFFVTALKLQGDVWWGHTDAAEWSVVSMAFVIGFFLVRIYTKERGRFYVVAAGLTAVTYAVAIVLSYFVSVDFVLVAYGLLAALIVWALSMAIKRYVLSYALIAVFALCSVGYFYSVDYVFNKVMQPHQQMRIRVALGIEDDLRGGGYNVDQSKIAIGSGGFMGKGFLKGTQTKLKYVPEQDTDFIFCTVGEEQGFLGSVLLLIGYATLIIRIVALAERQTKVFSRVYGHSVAAILLFHLSINVGMVIGLVPVIGIPLPFFSYGGSSLWGFTLLIFIFLRLDADRDCR","1474509 1473055","TIGR ID: PG1392","rod shape-determining protein","Inner membrane, Cytoplasm","Numerous significant hits to rod shape determining protein in gapped BLAST; e.g. residues 53-480 are 29% similar to gb|AAC65488.1| rod shape-determining protein of Treponemapallidum, residues 10-480 are 27% similar to gb|AAC67055.1| rod shape-determining protein of Borrelia burgdorferi, residues 295-465 and 8-204 are 42% and 23% similar (respectively) to fragments (residues 182-349 and 8-201) of gb|AAF94111.1| rod shape-determining protein of Vibrio cholerae.This sequence is similar to BT3817.","
InterPro
IPR001182
Family
Cell cycle protein
PF01098\"[15-484]TFTSW_RODA_SPOVE
PS00428\"[440-464]TFTSW_RODA_SPOVE


","BeTs to 11 clades of COG0772COG name: Bacterial cell division membrane protein FtsW/MrdB/SpoVEFunctional Class: DThe phylogenetic pattern of COG0772 is -----QVcEBRHUJ--OLINXNumber of proteins in this genome belonging to this COG is 2","***** IPB001182 (Cell cycle proteins) with a combined E-value of 9.6e-51. IPB001182A 103-124 IPB001182B 335-365 IPB001182C 374-395 IPB001182D 439-475","Residues 64-200 are 26% similar to a (PROTEIN MITOCHONDRION TRANSMEMBRANE OXIDOREDUCTASE NAD) protein domain (PD000148) which is seen in O51661_BORBU.Residues 258-465 are 30% similar to a (PROTEIN CELL SHAPE TRANSMEMBRANE) protein domain (PD003242) which is seen in RODA_TREPA.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Apr 18 14:11:40 MDT 2001","Fri Dec 26 13:56:22 2003","Mon Mar 5 10:10:13 MST 2001","Mon Mar 5 10:10:13 MST 2001","Mon Mar 5 10:10:13 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 345-464 and 24-201 are 28% and 22% similar (respectively) to fragments (residues 249-366 and 13-194) of PG0521, a predicted cell division protein (ftsW).","Mon Mar 5 10:10:13 MST 2001","Mon Mar 5 10:10:13 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 15 to 484 (E-value = 7e-31) place PG1223 in the FTSW_RODA_SPOVE family which is described as Cell cycle protein (PF01098)","Wed Apr 18 14:11:40 MDT 2001","34541074","","","","","","1","","25","PG1392" "PG1224","1476364","1474502","1863","ATGAGTAAACAGCGGAAAGATCCCAACGAAAAACATCGTTTCCTATTGGTGATAGCCACTATCTGTGTGGTATTCATCTATGCGATACGCCTTTTCTATTTGCAAATCCTAAGTCCGAACTATAAGGCTCGTGCCGATAGCAATGCTTTCTATCAGAAGCCTGTATATCCTTCGCGTGGCGTGATATACGACCGCAACGGAGAGCTCCTCGTGTATAACGAACCGGCCTATGACCTTGTAGCCGTGACGAAAGAGGTAGGCGAATTCGACACCCTTGCCCTGTGTCAGACCTTGAATGTGGAGCCGGAGTATGTACGCAAGCGTTTTCAGGACATAAGGGATCGTCGTATCAACCCCGGCTATTCGCCTTACGTACCTCAACTCCTGCTGGCGCAATTGAACCCTCGCGAAGCGGGACGTTTTCAGGAGCAGCTGTTCAAATTCCCGGGCTTTTCCATTCGTCCCCGTGCCATCCGTCAATATAAGTATCATGGAGCCGCACATGTGCTGGGCTATCTTTCCGAAGCGAATATGCGTGACTTAGAGCGCGACAGCTCGCTCATTGCCGGCGACTATGTGGGTAGAAGCGGTATAGAGCGTCAGTACGAGAAAACGCTCCGAGGCGAAAAAGGGATAGAAGTCCTGCTTCGTGACGCTCGCGGTCGTATCAAAGGACACTACTCCGATGGCAAATACGATTCGCCGGCCATTCCCGGACGCGATCTGACCCTTTCGATCGACAGCAAGCTACAGACACTGGGCGAACAGCTGATGCAGGGAAAGCGCGGAGCTATAGTAATGATCGAACCGGAGACGGGGGAAGTGCTCTGTCTCGTCTCTTCACCCTCCTACGATCCCTCGCTACTTGCCGGTAAGGACAGGGGGAAAAATCATCTGGAGATGGAACATGATCGAAACAAGCCCCTGTATGCCCGTGCCATTCAGGCCACCTATCCTCCCGGCTCCACTTTCAAGCCGGCACAAGGGGCTATCTTTCTGCAGGAAGGGGTGATCAGGCCTACGGATGCTTTTAGCTGTTATCACGGTTTCCCTCCCCTGAACAACAGACCGGCCTGTCACAGCCACGGCTCTCCACTCAGTCTGGTGCCGGCATTGGCCACCAGCTGCAATGCCTTCTTCTGCTGGGGGCTCCGTGCCATGCTGGATAACAGGCGGTTCTATCCTTCCGTTCAGGAGGCATTCGAGCATTGGAAGAACAGGATCGTCGGACTGGGGTTCGGCTACAGGCTTGGACTGGATCTGCCCGGGGAGAGGCGAGGCTATATCCCCAACAGCAAGGTGTACGACAAGGCTTATAAGGGGCGATGGAATTCCTCCACCATTATTTCCATCTCGATCGGTCAGGGCGAAATCTTAGCCACTCCGCTCCAAATAGCCAATCTGGGTGTCATCATTGCCAACAGGGGACGCTATCGCCGTCCGCATGTGGTGAAAGCCATTCAGGGGATCCCCCTCGATACAGCTTATACGAACTGGCAGAATAGCGGCATCAGTCCGGCGAATATGGAGTATATAGTAGAAGGAATGGCGAGAGCCGTAACGGGCGGAACCTGTCATGCAGCCAACTTCGCCCCGGGGGAAATAGAGGTATGCGGCAAGACGGGTACGGCCGAGAATCCTCACGGTAAAGACCATTCGGCTTTCCTTGGCTTTGCCCCTCGCAACAATCCGAAGGTGGTCGTATCCGTCTATGTGGAGAACGGCGGCTTCGGGGCCGTGTACGGAGTCCCCATCGGACGGGTAATGATGGAGTATTATCTCCGCGAAGGCAAACTGTCTCCGGAGGGCGAAGCCGTGGCCACGAAGATGTCCAACACTGCAATTCACTACAGCAATGTCTTT","9.90","19.22","69324","MSKQRKDPNEKHRFLLVIATICVVFIYAIRLFYLQILSPNYKARADSNAFYQKPVYPSRGVIYDRNGELLVYNEPAYDLVAVTKEVGEFDTLALCQTLNVEPEYVRKRFQDIRDRRINPGYSPYVPQLLLAQLNPREAGRFQEQLFKFPGFSIRPRAIRQYKYHGAAHVLGYLSEANMRDLERDSSLIAGDYVGRSGIERQYEKTLRGEKGIEVLLRDARGRIKGHYSDGKYDSPAIPGRDLTLSIDSKLQTLGEQLMQGKRGAIVMIEPETGEVLCLVSSPSYDPSLLAGKDRGKNHLEMEHDRNKPLYARAIQATYPPGSTFKPAQGAIFLQEGVIRPTDAFSCYHGFPPLNNRPACHSHGSPLSLVPALATSCNAFFCWGLRAMLDNRRFYPSVQEAFEHWKNRIVGLGFGYRLGLDLPGERRGYIPNSKVYDKAYKGRWNSSTIISISIGQGEILATPLQIANLGVIIANRGRYRRPHVVKAIQGIPLDTAYTNWQNSGISPANMEYIVEGMARAVTGGTCHAANFAPGEIEVCGKTGTAENPHGKDHSAFLGFAPRNNPKVVVSVYVENGGFGAVYGVPIGRVMMEYYLREGKLSPEGEAVATKMSNTAIHYSNVF","1476364 1474502","TIGR ID: PG1393","penicillin binding protein 2","Inner membrane, Cytoplasm","This sequence is orthologous to CT270 and to BT3816.Numerous significant hits to penicillin-binding protein in gapped BLAST; e.g. residues 1-602 are 31% similar to gb|AAG07390.1|AE004817_14 penicillin-binding protein 2 of Pseudomonas aeruginosa, residues 15-594 are 31% similar to gb|AAF94112.1| penicillin-binding protein 2 of Vibrio cholerae, residues 14-596 are 30% similar to gb|AAC21710.1| penicillin-binding protein 2 of Haemophilus influenzae Rd.","
InterPro
IPR001460
Domain
Penicillin-binding protein, transpeptidase
PF00905\"[263-591]TTranspeptidase
InterPro
IPR005311
Domain
Penicillin-binding protein, dimerisation domain
PF03717\"[54-228]TPBP_dimer
SSF56519\"[47-245]TPBP_dimer
InterPro
IPR012338
Domain
Penicillin-binding protein, transpeptidase fold
SSF56601\"[245-598]TPBP_transp_fold
noIPR
unintegrated
unintegrated
G3DSA:3.40.710.10\"[245-601]TG3DSA:3.40.710.10
G3DSA:3.90.1310.10\"[124-244]TG3DSA:3.90.1310.10


","BeTs to 11 clades of COG0768COG name: Cell division protein FtsI/penicillin-binding protein 2Functional Class: MThe phylogenetic pattern of COG0768 is -----QVcEBRHUJ--OLINXNumber of proteins in this genome belonging to this COG is 2","***** PF00905 (Penicillin binding protein transpeptidase domain) with a combined E-value of 2.7e-06. PF00905A 59-67 PF00905B 321-326","Residues 198-427 are 30% similar to a (PROTEIN PENICILLIN-BINDING BINDING PENICILLIN CELL) protein domain (PD000435) which is seen in Q51107_NEIME.Residues 530-594 are 38% similar to a (PROTEIN PENICILLIN-BINDING BINDING PENICILLIN 2B CELL) protein domain (PD011751) which is seen in PBP2_HAEIN.Residues 10-173 are 29% similar to a (PROTEIN PENICILLIN-BINDING MEMBRANE) protein domain (PD002485) which is seen in O67249_AQUAE.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Mar 22 11:55:17 MST 2000","Fri Dec 26 13:54:54 2003","Mon Mar 5 10:46:28 MST 2001","Mon Mar 5 10:46:28 MST 2001","Mon Mar 5 10:46:28 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 57-580 are 23% similar to PG0517, a predicted penicillin-binding protein. ","Mon Mar 5 10:46:28 MST 2001","Mon Mar 5 10:46:28 MST 2001","-42% similar to PDB:1MWR Structure of SeMet Penicillin binding protein 2a from methicillin resistant Staphylococcus aureus strain 27r (trigonal form) at 2.45 A resolution. (E_value = 1.3E_28);-42% similar to PDB:1MWS Structure of nitrocefin acyl-Penicillin binding protein 2a from methicillin resistant Staphylococcus aureus strain 27r at 2.00 A resolution. (E_value = 1.3E_28);-42% similar to PDB:1MWT Structure of penicillin G acyl-Penicillin binding protein 2a from methicillin resistant Staphylococcus aureus strain 27r at 2.45 A resolution. (E_value = 1.3E_28);-42% similar to PDB:1MWU Structure of methicillin acyl-Penicillin binding protein 2a from methicillin resistant Staphylococcus aureus strain 27r at 2.60 A resolution. (E_value = 1.3E_28);-42% similar to PDB:1VQQ Structure of Penicillin binding protein 2a from methicillin resistant Staphylococcus aureus strain 27r at 1.80 A resolution. (E_value = 1.3E_28);","","","Residues 54 to 228 (E-value = 4.3e-30) place PG1224 in the PBP_dimer family which is described as Penicillin-binding Protein dimerisation domain (PF03717)Residues 263 to 591 (E-value = 4e-53) place PG1224 in the Transpeptidase family which is described as Penicillin binding protein transpeptidase domain (PF00905)","Fri Dec 26 13:54:54 2003","34541075","","","Asoh,S., Matsuzawa,H., Ishino,F., Strominger,J.L., Matsuhashi,M.and Ohta,T. 1986. Nucleotide sequence of the pbpA gene and characteristics of the deduced amino acid sequence of penicillin-binding protein 2 of Escherichia coli K12. Eur. J. Biochem. 160 (2): 231-238. PubMed: 3533535. Matsuzawa,H., Asoh,S., Kunai,K., Muraiso,K., Takasuga,A. and Ohta,T. 1989. Nucleotide sequence of the rodA gene, responsible for the rod shape of Escherichia coli: rodA and the pbpA gene, encoding penicillin-binding protein 2, constitute the rodA operon. J. Bacteriol. 171 (1): 558-560. PubMed: 2644207.","","Mon Mar 5 10:46:28 MST 2001","1","","25","PG1393" "PG1225","1476875","1476360","516","ATGATTCGTGAGATAAGGTTTTTCTTGGCAGCTGTGCTGCTGGTTCTGCTACAGGTATGGGTGTTCAACTACATATTTCTGTTCAAAGTAGCCACTCCTTTCGTCTATATATATACTCTGATGCTGTTGCCGCTGAACGTGTCTGTTTCCGCTCTCTTGTGGCGAGCATTCATAATAGGCATGTTCCTCGATGTCCTTAGTGGAGTACCCGGGCTGCATGCCGCATCATTGACGGCTACGGCTTTCGTCCGCAACGGGCTGGCACGTCCTTTCTTGGAAAAGGATTCGGACTTGGGGTATCCACCGTCGGCACGGAATCTGAAAGTCGGTATATATGTATTCGTGCTGGAGCTTACCATCATACATCATCTGCTCCTTTTCATTCTGGACTCGTGGAGCCTGTCGAGTGTGCCGTATATGCTGCTTCGTACAGGAGCAAGCATCCTGCTGACTTATCTGCTATTGCTTATTATGAACTCGCTTTTCGGCAAGAGACTCAAAATGCCAGAAAATGAG","10.40","4.70","19495","MIREIRFFLAAVLLVLLQVWVFNYIFLFKVATPFVYIYTLMLLPLNVSVSALLWRAFIIGMFLDVLSGVPGLHAASLTATAFVRNGLARPFLEKDSDLGYPPSARNLKVGIYVFVLELTIIHHLLLFILDSWSLSSVPYMLLRTGASILLTYLLLLIMNSLFGKRLKMPENE","1476875 1476360","TIGR ID: PG1394","conserved hypothetical protein","Inner membrane, Cytoplasm","This sequence corresponds to gi:34397391 in Genbank.Its nearest neighbor in the NR database is gi:53715382 from Bacteroides fragilis YCH46.","
InterPro
IPR002110
Repeat
Ankyrin
PR01415\"[68-80]T\"[134-146]TANKYRIN


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Fri Sep 10 17:11:19 2004","Mon Mar 7 14:37:37 2005","Mon Mar 5 10:48:46 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Mar 5 10:48:46 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Mar 5 10:48:46 MST 2001","34541076","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Mon Mar 7 14:37:37 2005","","1","","25","PG1394" "PG1226","1477762","1476878","885","ATGCGTAAGCTCATTGAGTTTATAGTACGTCATCAACATTGGCTACTGTTTCTTTTTCTGGAGACGGTAGCCTTTGTCGTACTCTTCAACGATAGCATCTACCATCGAGCGCAGGGAATGGCGGTAGCCAATGCCCTGACGGGGCGCATCAATAGCCTGACGGGCGAAGTGCGCAGTTATATGAGTCTGCGTGAGAAAAATCGTATGCTTCTCGATGCCAATGCACGGTTGGAGTTGGAGTACATTTCGCTCAAGAGAGCTGTTGATGCAGCCGTAGCCGATTCTGTACGCCCCCTACTGTTCCGGCCGGATTCCCTCAATCCGCAACCGGTGGAGATGGACTACCTGAGAGCACAGGTGGTCAATGCCTCCTATAACAGGGTGGAGAATTTCATGACCATAGATAAGGGACGAGCCGATGGTGTACTGCCGGAAATGGGTGTAGTGTCGGCTACGGGTGTGGTGGGTGCCGTAACGGCTGCTTCAGATCATTATGCTATTGTGATCCCGATCATCAACCCGAAATTCAAACTCAGTTGCCGACTCAAGGGAAGCGAATATGTAGGTTCCATTCTGTGGGAGAAGCCCGGGAGCAATGTAGCCCAGCTGACCGATCTGCCCCGTCACGTGCAGTTAGCACAGGGAGATACGGTAGTAACGAGCGGGTATTCATCCATCTTCCCTGCTAACCTGATGGTCGGACGTGTGGGCAAGATAAAGGGCAAGGATACGCCTTTGGCCGAGAGAAATTCGTTCAGTGCCGTACCTGTAATCCTGTCTGCCGACTTCGGTAGGCTGACGGATGTGTATGTGATCCTGAACAAGATCGATATAGAGAGGCAAAAGCTGGAGGAGGAAAACGGCATACCCAAAACGGAGGCTTAC","9.10","3.17","32752","MRKLIEFIVRHQHWLLFLFLETVAFVVLFNDSIYHRAQGMAVANALTGRINSLTGEVRSYMSLREKNRMLLDANARLELEYISLKRAVDAAVADSVRPLLFRPDSLNPQPVEMDYLRAQVVNASYNRVENFMTIDKGRADGVLPEMGVVSATGVVGAVTAASDHYAIVIPIINPKFKLSCRLKGSEYVGSILWEKPGSNVAQLTDLPRHVQLAQGDTVVTSGYSSIFPANLMVGRVGKIKGKDTPLAERNSFSAVPVILSADFGRLTDVYVILNKIDIERQKLEEENGIPKTEAY","1477762 1476878","TIGR ID: PG1395","conserved hypothetical protein (probable rod shape-determining protein MreC)","Outer membrane, Periplasm, Inner membrane, Cytoplasm","Two weak hits to rod shape-determining protein MreC in gapped BLAST; e.g. residues 39-243 are 23% similar to emb|CAA15195.1| rod shape-determining protein MreC of Rickettsia prowazekii, residues 132-272 are 27% similar to gb|AAF93589.1| rod shape-determining protein MreC of Vibrio cholerae.","
InterPro
IPR007221
Family
Rod shape-determining protein MreC
PF04085\"[118-276]TMreC


","BeTs to 7 clades of COG1792COG name: Rod shape-determining protein MreCFunctional Class: MThe phylogenetic pattern of COG1792 is -----q--eb-huj--olinxNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 39-243 are 19% similar to a (PROTEIN MR ROD SHAPE-DETERMINING) protein domain (PD011444) which is seen in Q9ZCH5_RICPR.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon Mar 5 12:05:47 MST 2001","Mon Mar 5 11:53:51 MST 2001","Mon Mar 5 11:53:51 MST 2001","","Mon Mar 5 11:53:51 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Mar 5 11:53:51 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 118 to 276 (E-value = 1.5e-19) place PG1226 in the MreC family which is described as rod shape-determining protein MreC (PF04085)","Thu Mar 15 13:42:06 MST 2001","34541077","","","","","","1","","25","PG1395" "PG1227","1478819","1477803","1017","ATGGGATTATTTTCTTTTCGACAGGAATTGGCCATTGACTTAGGTACGGCTAATACGATAATCATCAAAGATGGTAAGGTCGTCTTGGACGAACCTTCCGTAGTAGCATTCGATCGCCGCACGGATGAAGTGATAGCAGTAGGGACAGATGCTCGTGAGATGTATGAGAAAGGACACCAGCATATCAGGACAGTACGCCCCTTGCGAGATGGTGTGATAGCCGACTTCAAAGCTGCCGAGCAGATGATAAGCGGTATGATCCGTATGATCGGTAAGAAGCATCGCTGGATCCATCCATCGCTCCGCATGGTGATCGGTATACCTTCGGGTAGTACGGAAGTCGAGATGCGTGCCGTGCGCGACTCCAGCGAGCATGCAGGTGGGCGTGACGTATATATGATATATGAACCTATGGCTGCTGCTGTGGGTATCGGCATCGATGTATTGGCTCCGGAGGGAAATATGATTGTGGATATAGGTGGAGGTACAACGGAGATCGCCGTCATTTCACTGGGCGGTATCGTCATGGACCAGTCCATTCGTGTAGCCGGTGATGAACTGACCAATGATATTATGGACTATATGCGCCGCGAACACAATGTAAAGATCGGGGAGCGTACAGCTGAGCAGATCAAAATCAATGTAGGTGCAGCTTCGGAAGACTTGGCTTCACCGCCCGAGACCTATCTGGTCTGCGGTGCAGACCAGATGGATACCCTTCCGAGGAAGATACCCGTAAGTTATAAGGAGGTGGCACATTGTCTGGAGAAGTCCATCGTGAAGATCGAAGCTGCCATCCTCAAAGCATTGGAGGAAACCCCTCCCGAACTTTATGCCGACATCGTAAGGAACGGTGTATTCCTGACCGGAGGAGGAGCTATGTTGCGCGGTTTGGACAAGCGTCTGACCGATCGTTTCGGTATCACTTTCCAAGTAGCCGATGAGCCTCTGTTGGCTGTAGCCAAGGGCACGGGGATTGCGCTTAAATACGTGGACACATTCAACTTCCTGATCCGA","5.20","-8.38","37054","MGLFSFRQELAIDLGTANTIIIKDGKVVLDEPSVVAFDRRTDEVIAVGTDAREMYEKGHQHIRTVRPLRDGVIADFKAAEQMISGMIRMIGKKHRWIHPSLRMVIGIPSGSTEVEMRAVRDSSEHAGGRDVYMIYEPMAAAVGIGIDVLAPEGNMIVDIGGGTTEIAVISLGGIVMDQSIRVAGDELTNDIMDYMRREHNVKIGERTAEQIKINVGAASEDLASPPETYLVCGADQMDTLPRKIPVSYKEVAHCLEKSIVKIEAAILKALEETPPELYADIVRNGVFLTGGGAMLRGLDKRLTDRFGITFQVADEPLLAVAKGTGIALKYVDTFNFLIR","1478819 1477803","This protein displays strong similarity to numerous rod shape-determining proteins and weaker similarity to many HSP70,heat shock 70 proteins, which are molecular chaperones involved in cell morphogenesis, also called chaperone protein DnaK.TIGR ID: PG1396","rod shape-determining protein MreB","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 1-332 are 48% similar to gb|AAD08416.1| rod shape-determining protein of Helicobacter pylori 26695, residues 6-332 are 47% similar to gb|AAF84118.1|AE003964_2 rod shape-determining protein of Xylella fastidiosa, residues 6-334 are 47% similar to gb|AAD18988.1| rod shape protein-sugar kinase of Chlamydophila pneumoniae, residues 6-332 are 47% similar to gb|AAF38963.1| cell shape-determining protein of Chlamydia muridarum.This sequence s similar to BT3813.","
InterPro
IPR001023
Family
Heat shock protein Hsp70
PR00301\"[8-21]T\"[26-38]T\"[103-123]T\"[162-172]THEATSHOCK70
InterPro
IPR004753
Family
Cell shape determining protein MreB/Mrl
PR01652\"[44-62]T\"[64-87]T\"[129-148]T\"[184-204]T\"[299-325]TSHAPEPROTEIN
PF06723\"[7-336]TMreB_Mbl
TIGR00904\"[6-336]TmreB
noIPR
unintegrated
unintegrated
G3DSA:3.30.420.40\"[5-160]TG3DSA:3.30.420.40
G3DSA:3.90.640.10\"[183-258]TG3DSA:3.90.640.10
SSF53067\"[5-145]T\"[146-338]TSSF53067


","BeTs to 11 clades of COG1077COG name: HSP70 class molecular chaperones involved in cell morphogenesisFunctional Class: DThe phylogenetic pattern of COG1077 is a-t-YqV-eB-huj--olinxNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 133-297 are 33% similar to a (CELL DIVISION FTSA PROTEIN) protein domain (PD005443) which is seen in O52470_PSEPU.Residues 69-323 are 47% similar to a (PROTEIN HEAT SHOCK ATP-BINDING CHAPERONE FAMILY) protein domain (PD000089) which is seen in Q9ZCH4_RICPR.Residues 3-68 are 46% similar to a (PROTEIN ROD SHAPE-DETERMINING MREB) protein domain (PD002685) which is seen in O67013_AQUAE.Residues 8-329 are 22% similar to a (ROD SHAPE-DETERMINING PROTEIN MREB) protein domain (PD130895) which is seen in O28258_ARCFU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Fri Dec 26 13:53:19 2003","Wed Apr 18 13:40:12 MDT 2001","Fri Dec 26 13:53:19 2003","Mon Mar 5 12:37:02 MST 2001","","Mon Mar 5 12:37:02 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 104-326 are 22% similar to PG1069, a predicted DnaK protein (Hsp70).","Mon Mar 5 12:37:02 MST 2001","Mon Mar 5 12:37:02 MST 2001","-64% similar to PDB:1JCE MREB FROM THERMOTOGA MARITIMA (E_value = 2.0E_75);-64% similar to PDB:1JCF MREB FROM THERMOTOGA MARITIMA, TRIGONAL (E_value = 2.0E_75);-64% similar to PDB:1JCG MREB FROM THERMOTOGA MARITIMA, AMPPNP (E_value = 2.0E_75);","","","Residues 7 to 336 (E-value = 4.2e-149) place PG1227 in the MreB_Mbl family which is described as MreB/Mbl protein (PF06723)","Wed Apr 18 13:40:12 MDT 2001","34541078","","","Doi,M., Wachi,M., Ishino,F., Tomioka,S., Ito,M., Sakagami,Y. Suzuki,A. and Matsuhashi,M.. Determinations of the DNA sequence of the mreB gene and of the gene products of the mre region that function in formation of the rod shape of Escherichia coli cells, J. Bacteriol. 170 (10), 4619-4624 (1988)","","Wed Apr 18 13:23:44 MDT 2001","1","","25","PG1396" "PG1228","1480448","1478925","1524","TTGCGTGTGATGGAAAAGGTTATCCGCAGAGCTCTCATATCGGTCTATCATAAAGAAGGTTTGGCCGAGATACTGGCCGAATTGAACAGACAAGGGGTAGAGTTCGTATCCACAGGAGGAACTCATGAATTTATCACTTCGCTCGGTTATGCGTGTCGGGCCGTGGATGATCTGACGCGTTATCCTTCGATGCTCGGGGGACGGGTGAAGACATTACACCCAATGATCTTCGGCGGTATTTTGGCTCGTCGCGGTCATGAAAGCGATGTGCGAGAAGTAGGCGAGTACGGGTTACCTCTTATCGATTTGGTCATCGTGGATCTATATCCATTCGAGGCCACCGTGGCATCAGGAGCATCGGAAGAAGATATCATTGAGAAGATAGATATAGGCGGTATCTCTCTCATTAGAGGAGCTGCCAAAAACTTCGAAGATGTCGTTATCATCTCGTCACGGGCACAGTATGCCGGATTTTACAGCCTGCTGAAAGAGCAGGGAGCTCGAACCTCTTTGGCTGAACGCAGACATTATGCTCGAGAAGCTTTCGCTGTGAGTTCGGCATACGACAGTGCTATCTTCCGCTATTTCGATGATGGAGAGCAGACGGCTTTTCGTATGTCGGCAGATAGCCCGAAAGTGCTTCGCTATGGGGAGAACCCTCATCAGCGAGGATTCTTTTTCGGCAACTTCGACCGCTATTTCGATAAGCTCCAAGGAAAAGAAATCTCCTACAACAATTTGCAGGACATCGAAGCTGCGGTATCGCTTATCAGTGAGTTTTCCGCCCCCACCTTTGCCATCCTCAAGCATACGAATGCCTGTGGCATAGCTTCGCGCGGTACACTGATCGAAGCTTGGCAGGCTGCTCTTGCCGGTGATCCCGTATCGGCTTTTGGCGGCATATTGGTGACAAATACTCCTATCGATAGGGAGACAGCTCAGGAGATCGACAAGATTTTCTTCGAGGTGATCATTGCTCCCGACTACGATAATGCTGCCATGGAATATCTGACACGCAAGACGAACAGGATTATACTTCTACAGAAAGAGCCTGTACGTGAGCAGTGGCAGTTCCGCTCCATGTTTGGCGGTGTGCTCATGCAGCAGGTGGATGGTGTGACAGCCAAGACTGTCGATTTCAAGCCTGTAACACCCGTAGTGCCTACAGCAGATGAAACGGACGACCTCATCTTTGCCAATAAGGTAGTGAAGCATAGCAAGAGTAATGCTATTACTTTGGTCAAGGATAGCCAACTTTGTGCCAGTGGAGTTGGGCAGACCTCCAGAGTCGATGCTTTGCGACAGGCTATCGATAAAGCACGGAATTTCGGCTTTGACCTGAATGGGGCTGTCATGGCCAGCGATGCTTTCTTTCCTTTTGCCGATTGTGTGGAGATAGCAGCCGAAGCAGGTATTCGCGCTATCATTCAGCCCGGAGGTTCCATTAAGGACAATCTGAGCATCGAAGAGGCCACAAAAAAAGGTATTGCCATGGTGATGACGGGTGTAAGACATTTCAAACAT","5.70","-7.73","55944","LRVMEKVIRRALISVYHKEGLAEILAELNRQGVEFVSTGGTHEFITSLGYACRAVDDLTRYPSMLGGRVKTLHPMIFGGILARRGHESDVREVGEYGLPLIDLVIVDLYPFEATVASGASEEDIIEKIDIGGISLIRGAAKNFEDVVIISSRAQYAGFYSLLKEQGARTSLAERRHYAREAFAVSSAYDSAIFRYFDDGEQTAFRMSADSPKVLRYGENPHQRGFFFGNFDRYFDKLQGKEISYNNLQDIEAAVSLISEFSAPTFAILKHTNACGIASRGTLIEAWQAALAGDPVSAFGGILVTNTPIDRETAQEIDKIFFEVIIAPDYDNAAMEYLTRKTNRIILLQKEPVREQWQFRSMFGGVLMQQVDGVTAKTVDFKPVTPVVPTADETDDLIFANKVVKHSKSNAITLVKDSQLCASGVGQTSRVDALRQAIDKARNFGFDLNGAVMASDAFFPFADCVEIAAEAGIRAIIQPGGSIKDNLSIEEATKKGIAMVMTGVRHFKH","1480448 1478925","TIGR ID: PG1397","bifunctional purine biosynthesis protein (phosphoribosylaminoimidazolecarboxamide formyltransferase) (aicar transformylase) (IMP cyclohydrolase) (inosinicase) (IMP synthetase) (ATIC)","Cytoplasm","Numerous significant hits to bifunctional purine biosynthesis protein (phosphoribosylaminoimidazolecarboxamide formyltransferase) (aicar transformylase) (IMP cyclohydrolase) (inosinicase) (IMP synthetase) (ATIC) in gapped BLAST; e.g. residues 10-508 are 42% similar to gb|AAC07734.1| phosphoribosylaminoimidazolecarboxamide formyltransferase of Aquifex aeolicus, residues 9-508 are 41% similar to dbj|BAA18861.1| phosphoribosyl aminoimidazole carboxy formylformyltransferase of Synechocystis sp., residues 8-508 are 38% similar to gb|AAA22683.1| phosphoribosyl aminoimidazole carboxy formyl formyltransferase/inosine monophosphate cyclohydrolase of Bacillus subtilis.This sequence is similar to BT3812.","
InterPro
IPR002695
Family
AICARFT/IMPCHase bienzyme
PD004666\"[15-196]TQ7MUT5_PORGI_Q7MUT5;
PTHR11692\"[4-508]TBIFUNCTIONAL PURINE BIOSYNTHESIS PROTEIN
InterPro
IPR011607
Domain
MGS-like
PF02142\"[20-134]TMGS
InterPro
IPR013982
Domain
AICARFT/IMPCHase bienzyme, formylation region
PF01808\"[139-440]TAICARFT_IMPCHas
SM00798\"[139-440]Tno description
noIPR
unintegrated
unintegrated
G3DSA:3.40.140.20\"[354-508]Tno description
G3DSA:3.40.50.1380\"[4-192]Tno description


","BeTs to 8 clades of COG0138COG name: AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful)Functional Class: FThe phylogenetic pattern of COG0138 is a---Yqvcebrh---------Number of proteins in this genome belonging to this COG is 1","***** PF01808 (AICARFT/IMPCHase bienzyme) with a combined E-value of 4.2e-110. PF01808A 35-83 PF01808B 101-124 PF01808C 124-155 PF01808D 177-196 PF01808E 205-228 PF01808F 238-290 PF01808G 312-342 PF01808H 404-440 PF01808I 451-499","Residues 444-508 are 52% similar to a (FORMYLTRANSFERASE) protein domain (PD004903) which is seen in O67775_AQUAE.Residues 10-118 are 45% similar to a (CARBAMOYL-PHOSPHATE LARGE BIOSYNTHESIS PROTEIN) protein domain (PD002195) which is seen in O67775_AQUAE.Residues 140-440 are 40% similar to a (FORMYLTRANSFERASE) protein domain (PD004666) which is seen in P74741_SYNY3.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon Mar 5 13:04:11 MST 2001","Fri Dec 26 13:51:41 2003","Mon Mar 5 13:04:11 MST 2001","Mon Mar 5 13:04:11 MST 2001","Mon Mar 5 13:04:11 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Mar 5 13:04:11 MST 2001","-47% similar to PDB:1ZCZ Crystal structure of Phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase (TM1249) from THERMOTOGA MARITIMA at 1.88 A resolution (E_value = 4.5E_56);-47% similar to PDB:1G8M CRYSTAL STRUCTURE OF AVIAN ATIC, A BIFUNCTIONAL TRANSFORMYLASE AND CYCLOHYDROLASE ENZYME IN PURINE BIOSYNTHESIS AT 1.75 ANG. RESOLUTION (E_value = 1.9E_46);-47% similar to PDB:1M9N CRYSTAL STRUCTURE OF THE HOMODIMERIC BIFUNCTIONAL TRANSFORMYLASE AND CYCLOHYDROLASE ENZYME AVIAN ATIC IN COMPLEX WITH AICAR AND XMP AT 1.93 ANGSTROMS. (E_value = 1.9E_46);-47% similar to PDB:1OZ0 CRYSTAL STRUCTURE OF THE HOMODIMERIC BIFUNCTIONAL TRANSFORMYLASE AND CYCLOHYDROLASE ENZYME AVIAN ATIC IN COMPLEX WITH A MULTISUBSTRATE ADDUCT INHIBITOR BETA-DADF. (E_value = 1.9E_46);-47% similar to PDB:1THZ Crystal Structure of Avian AICAR Transformylase in Complex with a Novel Inhibitor Identified by Virtual Ligand Screening (E_value = 1.9E_46);","","","Residues 11 to 134 (E-value = 2.4e-27) place PG1228 in the MGS family which is described as MGS-like domain (PF02142)Residues 139 to 440 (E-value = 9.1e-83) place PG1228 in the AICARFT_IMPCHas family which is described as AICARFT/IMPCHase bienzyme (PF01808)","Fri Dec 26 13:51:41 2003","34541079","","","Ebbole,D.J. and Zalkin,H. 1987. Cloning and characterization of a 12-gene cluster from Bacillus subtilis encoding nine enzymes for de novo purine nucleotide synthesis. J. Biol. Chem. 262: 8274-8287. PubMed: 3036807.","","Mon Mar 5 13:04:11 MST 2001","1","","25","PG1397" "PG1228.1","1481220","1480957","264","GTGTGTTTTATTTTCCACACAGTGTTTTTCAGGCACTTATATTGCTTTCAGATGGCTTTTTATCTACATCTGAAGCCCAATGACTTAGAAGCCGCCCCTTCTTCCCGATCATTATGCAGCCGGAGAATCACAAAAGAGTATGATTTACAGCTACTTGTTATTTTTATGGTATGTTCGCTTAGATCGAACTGGCGTTCATTTTATTGTGTGTCAGGCGACTATTTGGTACACGCCGATTTCCAATGGTGGAAATCTACTCCCCTT","","","10578","VCFIFHTVFFRHLYCFQMAFYLHLKPNDLEAAPSSRSLCSRRITKEYDLQLLVIFMVCSLRSNWRSFYCVSGDYLVHADFQWWKSTPL","","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No significant hits in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-19]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Wed Dec 13 11:31:35 MST 2000","Wed Dec 13 11:31:35 MST 2000","Wed Dec 13 11:29:48 MST 2000","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1-65 are 98% similar to residues 1-65 of PG0026.1, a hypothetical protein.","Wed Dec 13 11:31:35 MST 2000","Mon Mar 5 13:09:04 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Mar 5 13:09:04 MST 2001","","","","","","","1","","25","" "PG1229","1481603","1481262","342","GTGCAAGCAGCTCCTCAAGGGGGGATTTACAACTACTTTCACTCCTTACTGCCACCCCTTTCACTCGCTCCTTTTTTGCCAAGAACTCCTCTTCCCTCCACCTCCTTATTTTGCAAAGGTCTCCATTTTTACGAACTGACGTGTACGGAATCGGAGAGGTCAAAAAAAGCAGTAATCATGTCGAAACATTTGACCGATTCCGAGCGTCTTCACATTGTGGAAGAATACCTCGGCAGCCCCGGAGCAAGTATGCCATCGAGAAGAAGTACAACATCGCCCAGGGGCTTATTAGAGACCATTGTACGGCATTTTTGCGATATGACCATTGGTCTTTTCTTAACG","8.40","3.04","12678","VQAAPQGGIYNYFHSLLPPLSLAPFLPRTPLPSTSLFCKGLHFYELTCTESERSKKAVIMSKHLTDSERLHIVEEYLGSPGASMPSRRSTTSPRGLLETIVRHFCDMTIGLFLT","1481603 1481262","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon Mar 5 13:19:15 MST 2001","","Mon Mar 5 13:19:15 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","PG1229 is similar to PG0679.2, a conserved hypothetical protein. Residues 42-104 are 96% similar to PG0679.2. Similarities are also seen to PG1100, PG1086, PG0838, PG0169.1, PG0885, PG0685, and PG1895.1, most of which are hypothetical proteins.","Mon Jun 4 13:23:56 MDT 2001","Mon Mar 5 13:19:15 MST 2001","-51% similar to PDB:1FXO THE STRUCTURAL BASIS OF THE CATALYTIC MECHANISM AND REGULATION OF GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE (RMLA). TMP COMPLEX. (E_value = );-51% similar to PDB:1FZW THE STRUCTURAL BASIS OF THE CATALYTIC MECHANISM AND REGULATION OF GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE (RMLA). APO ENZYME. (E_value = );-51% similar to PDB:1G0R THE STRUCTURAL BASIS OF THE CATALYTIC MECHANISM AND REGULATION OF GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE (RMLA). THYMIDINE/GLUCOSE-1-PHOSPHATE COMPLEX. (E_value = );-51% similar to PDB:1G1L THE STRUCTURAL BASIS OF THE CATALYTIC MECHANISM AND REGULATION OF GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE (RMLA). TDP-GLUCOSE COMPLEX. (E_value = );-51% similar to PDB:1G23 THE STRUCTURAL BASIS OF THE CATALYTIC MECHANISM AND REGULATION OF GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE (RMLA). GLUCOSE-1-PHOSPHATE COMPLEX. (E_value = );","","","No significant hits to the Pfam 11.0 database","Mon Jun 4 13:23:56 MDT 2001","","","","","","","1","","25","" "PG1230","1482407","1481631","777","ATGGAAGAGGTATCTCCCGACCACAGCACCATCAGTCGATTTCGTTCGGCACTGACAGAGTTGGGGCTCATGGACAAACTATTGGCGCAGTTTAACAAACAACTTTCCCGCCATCACATTTCGGTCAGGGAAGGGGTGCTTGTCGATGCAAGCCTTGTGGAGACGCCGCATAAACCCAACGGAAGCATTACGATTGAAGTCGCAGACGACAGAGAAGACAATCGGAGCGAGGAGGAAAAAGAGGCAGAGGAGGATTATCAAAAACAGGTTGTCCGTCAGCGTAAAGGGACGGATGAAGAAGCCCGTTGGGTTTACAAACAAAAGCGTTATCACTACGGATACAAAAAGCATTGTCTGACCAATGTTCAAGGCATTGTTCAAAAGGTGATAACGACAGCAGCGAATCGCAGTGACACGAAGGAGTTTATTCCGCTATTGCAGGGTGCAAACATACCTCAAGGCACAGCCGTCTTCGCGGACAAAGGATATGCTTGCGGGGAAAATCGTTCCTACCTGCAAACCCATCACCTTCAAGACGGCATCATGCACAAGGCACAACGCAACAGGGCATTGACCGAGGAAGAGAAGCAACGAAACAAAGCAATCAGTCGGATACGGAGCACCATCGAACGCACCTTTGGCAGTATTCGGCGGTGGTTTCATGGCGGACGATGTCGATACCGGGGACTTGCCAAGACCCATACTCAAAACATTCTTGAAAGCATCGCCTTTAATTTATACAGGACCCCGGGGATAATTATGTCCTCATCTCTAGGA","10.10","10.52","29725","MEEVSPDHSTISRFRSALTELGLMDKLLAQFNKQLSRHHISVREGVLVDASLVETPHKPNGSITIEVADDREDNRSEEEKEAEEDYQKQVVRQRKGTDEEARWVYKQKRYHYGYKKHCLTNVQGIVQKVITTAANRSDTKEFIPLLQGANIPQGTAVFADKGYACGENRSYLQTHHLQDGIMHKAQRNRALTEEEKQRNKAISRIRSTIERTFGSIRRWFHGGRCRYRGLAKTHTQNILESIAFNLYRTPGIIMSSSLG","1482407 1481631","Member of the IS5 family of elements. Reproduces the middle and C-terminal domains of full-length ISPg1 elements (e.g. PG1662).TIGR ID: PG1399","ISPg1 transposase fragment (IS1106-related transposase)","Cytoplasm","PG1230 is equivalent to the middle and C-terminal region of the previously sequenced AJ130872 and AB015879 in GenBANK. Residues 6-248 are 35% similar to the IS1106 sequence of N.meningitidis (AE002488).","
InterPro
IPR002559
Domain
Transposase, IS4-like
PF01609\"[45-246]TTransposase_11


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 201-259 are 96% similar to a (TRANSPOSASE ORF7 INSERTION SEQUENCE IS1126-LIKE GENE) protein domain (PD187845) which is seen in Q9ZA61_PORGI.Residues 55-200 are 86% similar to a (TRANSPOSASE PLASMID PROTEIN ELEMENT) protein domain (PD004652) which is seen in Q9ZAD0_PORGI.Residues 8-54 are identical to a (TRANSPOSASE ORF7 INSERTION SEQUENCE) protein domain (PD187846) which is seen in Q9ZA61_PORGI.","","","","","","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","","","","Mon Jun 25 13:13:47 MDT 2001","Fri Feb 16 11:50:17 MST 2001","Mon Jun 25 13:13:47 MDT 2001","Thu Dec 21 14:26:48 MST 2000","","Mon Jun 25 13:13:47 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1230 is virtually identical to PG1087, PG0763, PG1755, PG0686, PG0756, PG1798, PG1184, PG1919, PG0044, PG0689, PG1215, PG1665, PG0839, PG1895, all ISPg1 fragments that reproduce the middle and C-terminal residues of PG1267, PG0169, PG1050, PG1062, PG0740, PG0918, PG1662, PG1422, PG0420, PG0499, PG1099.Also, partial similarities to PG0732, PG0842, PG0883, PG1231, PG0730, PG1159, PG1608.","Fri Feb 16 11:50:17 MST 2001","Thu Jun 14 11:40:24 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 45 to 246 (E-value = 3.5e-39) place PG1230 in the Transposase_11 family which is described as Transposase DDE domain (PF01609)","Mon Jun 25 13:13:47 MDT 2001","","","Hanley,S.A., Aduse-Opoku,J. and Curtis,M.A.A 55-kilodalton immunodominant antigen of Porphyromonas gingivalisW50 has arisen via horizontal gene transferInfect. Immun. 67 (3), 1157-1171 (1999)Maley,J. and Roberts,I.S.Characterisation of IS1126 from Porphyromonas gingivalis W83: a new member of the IS4 family of insertion sequence elementsMicrobiol. Lett. 123 (1-2), 219-224 (1994)Shibata,Y., Hayakawa,M., Takiguchi,H., Shiroza,T. and Abiko,Y.Determination and characterization of the hemagglutinin-associatedshort motifs found in Porphyromonas gingivalis multiple geneproducts. J. Biol. Chem. 274 (8), 5012-5020 (1999)","Knight,A.I., Ni,H., Cartwright,K.A. and McFadden,J.J.Identification and characterization of a novel insertion sequence, IS1106, downstream of the porA gene in B15 Neisseria meningitidis.Mol. Microbiol. 6 (11), 1565-1573 (1992)","Wed Feb 14 11:34:55 MST 2001","Wed Feb 14 11:34:55 MST 2001","1","","25","PG1399" "PG1231","1483000","1483233","234","ATGCTTAAGGCCCATCGAGGTCAAGCCCTCAGTGAAAGTCAGAAACAACTCAATCGGATGATCAGTAAGACGCGCTGCTTGATAGAACGTACCTTCGGTAGTATTCGACGATGGTTCTGTGGCGGACGATGTCGCTACCGAGGGTTAGCCAAGACACATACCCGGAATATCCTTGAAGCTATGGCCTACAATCTCAAGCGTATGCCGGGGCTTCTTGTGCTTCAAGGCGCAAAA","12.00","14.31","9005","MLKAHRGQALSESQKQLNRMISKTRCLIERTFGSIRRWFCGGRCRYRGLAKTHTRNILEAMAYNLKRMPGLLVLQGAK","1482967 1483233","Member of the IS5 family of elements. TIGR ID: PG1400","ISPg1 fragment","Cytoplasm, Extracellular","PG1231 is equivalent to the C-terminal regions of the previously sequenced AJ130872 and AB015879 in GenBANK. Residues 1-65 are 44% similar to residues 247-311 of the IS1106 sequence of N.meningitidis (AE002488).","
InterPro
IPR002559
Domain
Transposase, IS4-like
PF01609\"[21-65]TTransposase_11


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 21-73 are 73% similar to a (TRANSPOSASE ORF7 INSERTION SEQUENCE) protein domain (PD187845) which is seen in Q9ZA61_PORGI.","","Thu Jun 14 11:40:47 MDT 2001","","Thu Jun 14 11:40:47 MDT 2001","Thu Jun 14 11:40:47 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:40:47 MDT 2001","Thu Jun 14 11:40:47 MDT 2001","","Mon Jun 25 13:18:37 MDT 2001","Wed Feb 14 12:31:32 MST 2001","Mon Jun 25 13:18:37 MDT 2001","Wed Feb 14 12:31:32 MST 2001","","Mon Jun 25 13:18:37 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1231 is similar to the C-terminal regions of PG0883, PG0730, PG1919, PG1798, PG1755, PG1662, PG1422, PG1267, PG1230, PG1184, PG1087, PG1062, PG1050, PG0918, PG0763, PG0756, PG0740, PG0686, PG0169, PG0044, PG0689, PG1099, PG0499, PG0420, PG1895, PG1665, PG1215, PG0839, PG1608, PG1159, all ISPg1-related elements.","Fri Feb 16 15:39:06 MST 2001","Thu Jun 14 11:40:47 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jun 25 13:18:37 MDT 2001","","","Hanley,S.A., Aduse-Opoku,J. and Curtis,M.A.A 55-kilodalton immunodominant antigen of Porphyromonas gingivalisW50 has arisen via horizontal gene transferInfect. Immun. 67 (3), 1157-1171 (1999)Maley,J. and Roberts,I.S.Characterisation of IS1126 from Porphyromonas gingivalis W83: a new member of the IS4 family of insertion sequence elementsMicrobiol. Lett. 123 (1-2), 219-224 (1994)Shibata,Y., Hayakawa,M., Takiguchi,H., Shiroza,T. and Abiko,Y.Determination and characterization of the hemagglutinin-associatedshort motifs found in Porphyromonas gingivalis multiple geneproducts. J. Biol. Chem. 274 (8), 5012-5020 (1999)","Knight,A.I., Ni,H., Cartwright,K.A. and McFadden,J.J.Identification and characterization of a novel insertion sequence, IS1106, downstream of the porA gene in B15 Neisseria meningitidis.Mol. Microbiol. 6 (11), 1565-1573 (1992)","Wed Feb 14 12:31:32 MST 2001","Wed Feb 14 12:31:32 MST 2001","1","","","PG1400" "PG1232","1484871","1483495","1377","ATGGAATTACCTTTTTCAGAATCCTACCGCATTAAAATGGTAGAGTCTATCCGCAAGAGTACGCGTGAAGAACGCGAGCAGTGGATCAAGGAAGCCCATTACAATCTCTTCCTCCTCAAGAGCGACTATGTATTTATCGATTTGCTCACTGATTCCGGCACAGGTGCTATGAGCGACCGCCAATGGTCTGCCATGATGCTCGGCGATGAGAGCTATGCAGGTGCACGCTCATACTATAATATGAAGAATGCCATTCACGACATTCTGGGCTTCGACTACTTCCTCCCCACTCATCAGGGTCGTGCTGCCGAAAATGTACTTTTCTCCACTATCGTGAAAGAAGGCGATGTACTGCCCGGCAACTCTCACTTCGACACGACTAAAGGGCATATTGAATACCGTCGCGCATTTGCCCCTGACTGCACCATCGACGAAGCTGCCGATACGCAGATCGAGCTTCCGTTCAAGGGCAATATGGATCTGAACAAGTTAGAGAAAATACTGAAAGAGACTCCTAAGGAAAAGATCCCTTGCGTAGTGCTCACGATCACGAACAACACAGCCGGAGGGCAGCCCGTTTCTATGAAGAATATACGTGAAGTGAGCGAGCTGACACATCGTTATGGTATTCGCCTGCTGATCGACTCTGCACGCTTTGCTGAAAATGCCTACTTCATCAAGACCCGCGAAGCCGGCTATGAAAATAAGAGCATCAAGGAAATCGTGAAGGAAATCTATTCGTATGCCGATATGATGACCATGTCCAGCAAGAAAGACGCTATCGTGAATATGGGTGGTTTCGTGGCATTCAAGGATGAAGAGCTCTTCAAGCGTTGCCAGATGTTCTGTATCATGAACGAAGGCTTTATTACTTACGGTGGTATGAGCGGTCGTGATATGAATGCTCTGGCACAAGGCCTGGACGAAGGTACCGACTTCGATACGCTTGAGACCCGTATCAAACAGGTGGAATATCTGGGCAAAAAGTTGGACGAATATGGTATTCCCTACCAGCGTCCTGCCGGCGGACACGCCATTTTCCTTGATGCTAAGAAGATCCTTACAAATGTGCCGAAAGAAGAGTTCATCGCTCAGACTTTGGGCGTTGAGCTGTATTTGGAAGCCGGCATCCGTGGTGTTGAGATCGGTTCTATCCTTGCAGACCGTGACCCCGTGACGAAGGAGAACCGCTATCCGCGTCTCGAGCTCCTGCGTCTGGCTATTCCGCGTCGTACATATACGAACAACCACATGGATGTTATCGCTGCTGCGGTAAAGAATGTATACGACCGTCGCGAAAGCATTACACGTGGCTATGTGATTACATATGAGAATCCAATCATGCGTCACTTCACTGTTGAGCTGGAAAAAGCCAAG","6.10","-4.97","52441","MELPFSESYRIKMVESIRKSTREEREQWIKEAHYNLFLLKSDYVFIDLLTDSGTGAMSDRQWSAMMLGDESYAGARSYYNMKNAIHDILGFDYFLPTHQGRAAENVLFSTIVKEGDVLPGNSHFDTTKGHIEYRRAFAPDCTIDEAADTQIELPFKGNMDLNKLEKILKETPKEKIPCVVLTITNNTAGGQPVSMKNIREVSELTHRYGIRLLIDSARFAENAYFIKTREAGYENKSIKEIVKEIYSYADMMTMSSKKDAIVNMGGFVAFKDEELFKRCQMFCIMNEGFITYGGMSGRDMNALAQGLDEGTDFDTLETRIKQVEYLGKKLDEYGIPYQRPAGGHAIFLDAKKILTNVPKEEFIAQTLGVELYLEAGIRGVEIGSILADRDPVTKENRYPRLELLRLAIPRRTYTNNHMDVIAAAVKNVYDRRESITRGYVITYENPIMRHFTVELEKAK","1484871 1483495","TIGR ID: PG1401","tryptophanase (tyrosine phenol-lyase) (beta-tyrosinase)","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 1-456 are 51% similar to pir||A48380 tyrosine phenol-lyase of Symbiobacterium thermophilum, residues 1-456 are 51% similar to gb|AAB41499.1| tyrosine phenol-lyase of Symbiobacterium sp. SC-1, residues 7-459 are 51% similar to dbj|BAA03249.1| tryptophanase of Enterobacter aerogenes. This sequence is similar to BT1492.","
InterPro
IPR001597
Domain
Aromatic amino acid beta-eliminating lyase/threonine aldolase
PD005927\"[10-443]TBeta_elim_lyase
PF01212\"[47-424]TBeta_elim_lyase
InterPro
IPR011166
Family
Tryptophanase
PIRSF001386\"[3-459]TTrpase
InterPro
IPR015421
Domain
Pyridoxal phosphate-dependent transferase, major region, subdomain 1
G3DSA:3.40.640.10\"[59-311]TPyrdxlP-dep_Trfase_major_sub1
InterPro
IPR015424
Domain
Pyridoxal phosphate-dependent transferase, major region
SSF53383\"[4-458]TPyrdxlP-dep_Trfase_major


","BeTs to 3 clades of COG0520COG name: Selenocysteine lyaseFunctional Class: EThe phylogenetic pattern of COG0520 is --t---vcEbrhujgpolin-Number of proteins in this genome belonging to this COG is 3","***** IPB001597 (Beta-eliminating lyase) with a combined E-value of 1.2e-206. IPB001597A 7-52 IPB001597B 53-104 IPB001597C 120-135 IPB001597D 155-181 IPB001597E 183-207 IPB001597F 208-245 IPB001597G 246-271 IPB001597H 272-309 IPB001597I 335-382 IPB001597J 383-423 IPB001597K 436-456","Residues 4-456 are 51% similar to a (LYASE PYRIDOXAL PHOSPHATE TRYPTOPHANASE) protein domain (PD005927) which is seen in TPL_SYMTH.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Mar 15 14:09:27 MST 2001","Thu Dec 4 15:38:53 2003","Mon Mar 5 13:35:07 MST 2001","Mon Mar 5 13:35:07 MST 2001","Mon Mar 5 13:35:07 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Mar 5 13:35:07 MST 2001","-69% similar to PDB:1AX4 TRYPTOPHANASE FROM PROTEUS VULGARIS (E_value = 2.5E_127);-67% similar to PDB:1C7G TYROSINE PHENOL-LYASE FROM ERWINIA HERBICOLA (E_value = 2.4E_125);-67% similar to PDB:2EZ1 Holo tyrosine phenol-lyase from Citrobacter freundii at pH 8.0 (E_value = 2.5E_122);-67% similar to PDB:2EZ2 Apo tyrosine phenol-lyase from Citrobacter freundii at pH 8.0 (E_value = 2.5E_122);-67% similar to PDB:1TPL THE THREE-DIMENSIONAL STRUCTURE OF TYROSINE PHENOL-LYASE (E_value = 4.2E_122);","","","Residues 3 to 458 (E-value = 2.4e-257) place PG1232 in the Beta_elim_lyase family which is described as Beta-eliminating lyase (PF01212)","Thu Mar 15 14:09:27 MST 2001","34541081","","","Hirahara,T., Horinouchi,S. and Beppu,T. 1993. Cloning, nucleotide sequence, and overexpression in Escherichia coli of the beta-tyrosinase gene from an obligately symbiotic thermophile, Symbiobacterium thermophilum. Appl. Microbiol. Biotechnol. 39 (3): 341-346. PubMed: 7763716.","","Thu Mar 15 14:09:27 MST 2001","1","","","PG1401" "PG1233","1486056","1485127","930","ATGGTTATATATTGGGTACTGCGAGGCAAGATTGTTTGGTTTATAGGAAATGCCCTTTTGTTGCTTTTCACATGGGGCACCATCGACACTTATATACCGCTGCATCGAAAGATAAAAGAGTCCTCGATTCCGCAGTCGCGTATCAAGGTGATGACCTATAACGTCAAGGGATTCGATTTTCGTGCTCACAATTCAGAGAATCCCAATCCTATTCTCAAATATATCAAAGGAAGTGGAGCCGATATCGTATGCTTGCAAGAGGCAGTACTGAGTCGGAAAAGCAACTCTCGTTATGTGGGGCTACGTACTTTCAAGAAATATCTTCCCGAATATCGCTACATGGAACTGTCGCATGCTCGAGAAGATAGAAAAGGCAGCGGCCTTATGCTCCTGTCCAAATATCCCATTCTCGATGTGCACCGCATCCCATACGAGTCCGCATTCAATGGCTCCACAGCCTACACCGTTGATATACAGGGGCGAAAAGTCCTTGTCGTGAACAATCACTTGGAAAGTTTCCGCTTGACAATGGCAGATGGGACGGAATATCTGAAAATGGTGCGGGAAGGGGAGGCAGCGGCTCTCAGTCGGATGATGACGGCCAAGATGGGGCCGGCCTATGCTCTGCGTGCCGTTCAGGCTGATTCAGTGAGCCATTATATCCGGTGCTCGGAATCTGAGCACGTGATCGTATGCGGTGACTTTAACGATACCCCCATATCATATGCTCGCCATAAAATAGCATCGGGCCTGAAAGATGCGTATTCTGATACGGGGCGTGGCCCGGGCTTTACTTTTAATCAGGGAGCTTTCAAGGTACGTATCGATCATATCCTCTATTCTTCAGGTTTTCTGGCATATAACTGTACGGTAGACAAGTCGGTCCATGCTTCGGATCACTTTCCGGTTTGGTGCTACCTGGTCTTCAAA","10.10","14.41","35212","MVIYWVLRGKIVWFIGNALLLLFTWGTIDTYIPLHRKIKESSIPQSRIKVMTYNVKGFDFRAHNSENPNPILKYIKGSGADIVCLQEAVLSRKSNSRYVGLRTFKKYLPEYRYMELSHAREDRKGSGLMLLSKYPILDVHRIPYESAFNGSTAYTVDIQGRKVLVVNNHLESFRLTMADGTEYLKMVREGEAAALSRMMTAKMGPAYALRAVQADSVSHYIRCSESEHVIVCGDFNDTPISYARHKIASGLKDAYSDTGRGPGFTFNQGAFKVRIDHILYSSGFLAYNCTVDKSVHASDHFPVWCYLVFK","1486269 1485127","TIGR ID: PG1402","conserved hypothetical protein","Cytoplasm","Two very weak hits to hypothetical proteins. Residues 48-279 are 26% similar to (AE002061) conserved hypothetical protein of Deinococcus radiodurans. Residues 188-303 are 25% similar to (AL109661) hypothetical protein of Streptomyces coelicolor.","
InterPro
IPR005135
Domain
Endonuclease/exonuclease/phosphatase
PF03372\"[48-307]TExo_endo_phos
noIPR
unintegrated
unintegrated
G3DSA:3.60.10.10\"[48-307]TG3DSA:3.60.10.10
SSF56219\"[30-309]TSSF56219


","No hit to the COGs database.","***** IPB000097 (AP endonucleases family 1) with a combined E-value of 7.7e-07. IPB000097A 48-60 IPB000097B 80-89 IPB000097D 227-261 IPB000097F 291-303","No significant hit to the ProDom database.","","Thu Jun 14 11:41:26 MDT 2001","","Thu Jun 14 11:41:26 MDT 2001","Thu Jun 14 11:41:26 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:41:26 MDT 2001","Thu Jun 14 11:41:26 MDT 2001","","","Mon Jun 25 13:25:23 MDT 2001","Mon Jun 25 13:25:23 MDT 2001","Mon Mar 5 13:38:48 MST 2001","Mon Jun 25 13:22:00 MDT 2001","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Mar 5 13:38:48 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 48 to 307 (E-value = 1e-32) place PG1233 in the Exo_endo_phos family which is described as Endonuclease/Exonuclease/phosphatase family (PF03372)","Mon Jun 25 13:22:00 MDT 2001","34541082","","","","","","1","","","PG1402" "PG1234","1487132","1486269","864","ATGAATACTCGTTTGATGGTATTCACGGTCTTGATCTCCTTGTTCGTTTGGCTTTTGCATGCCTTTCTGTCTCTTTTGGATGCCGATCCGTATATCGTGGAGCGGTGGCTTTGGTTGGCCCCCGATTTATATACCTTTTCGAGACATCCATGGACGCTATTCACGTACATATGGCTGCACTCGGATCTATGGCATCTTTTCTTCAATATGCTGTGGCTCTATTGGTTCGGACAGCTTTTCCTGCGCTATCAGAATCCCAGAAGGCTGGTCAGTGTCTATCTGCTTGGCGGACTGGCCGGAGGATTGCTCTATGTATTGGCAGTCTTGTTCGCTGACGCCTTTTCATTGGGTTTGTCTCATTTCCCTCTGATCGGAGCTTCTGCCAGCGTGATGGCCATTGTCTTCGGAGTGGCTTTTTATGCTCGCTGGGAGCGAGTGAATCTGTTATTCATAGGTCGGATCAAGCTGACGACATTGGCTCTCATCCTTTTTGTATTGGATGTATTGCTATTGACGGGGGATAACTTCGGTGGTCACGTGGCACATATCGGAGGAGCGGCTTTCGGAGTCTTGTTTGCCCTTTCATTGGCCCGAGGCAAGGACATCACGGTTTGGTTTCAGCGACTGCTCGATCGCATGACCGACTTTTTCAGCTCGCTCTCCGGCCGAAGAAAAGTATGCTCGAAGCCTCGCTTTCGAGTAAGAAGAACGACCAATCCGGCTGCTAAAAAGAGTGGAACGGATCCCAAAATACGAGAAACAAAGACTTCCATCGATGAGATCCTCGATAAAATTCGTATATCGGGATATGCATCATTGACTGCCGAAGAGAAGCGTCATCTCTTCGACCAAAGCAAGCGTTTA","10.90","14.87","33088","MNTRLMVFTVLISLFVWLLHAFLSLLDADPYIVERWLWLAPDLYTFSRHPWTLFTYIWLHSDLWHLFFNMLWLYWFGQLFLRYQNPRRLVSVYLLGGLAGGLLYVLAVLFADAFSLGLSHFPLIGASASVMAIVFGVAFYARWERVNLLFIGRIKLTTLALILFVLDVLLLTGDNFGGHVAHIGGAAFGVLFALSLARGKDITVWFQRLLDRMTDFFSSLSGRRKVCSKPRFRVRRTTNPAAKKSGTDPKIRETKTSIDEILDKIRISGYASLTAEEKRHLFDQSKRL","1487180 1486269","TIGR ID: PG1403","conserved hypothetical protein","Inner membrane, Cytoplasm","Several weak hits in gapped BLAST; e.g. residues 2-200 are 28% similar to (AE001034) conserved hypothetical protein of Archaeoglobus fulgidus, residues 36-198 are 33% similar to gb|AAC65937.1| glpG protein, putative of Treponema pallidum.","
InterPro
IPR002610
Family
Peptidase S54, rhomboid
PTHR22936\"[3-210]TPeptidase_S54_rhomboid
PF01694\"[44-201]TRhomboid


","BeTs to 7 clades of COG0705COG name: Uncharacterized membrane protein (homolog of Drosophila rhomboid)Functional Class: RThe phylogenetic pattern of COG0705 is am-kYqVceBRh-----l---Number of proteins in this genome belonging to this COG is 2","***** PF01694 (Rhomboid family) with a combined E-value of 3e-22. PF01694A 51-76 PF01694B 125-135 PF01694C 181-191","No significant hit to the ProDom database.","","Thu Jun 14 11:41:37 MDT 2001","","Thu Jun 14 11:41:37 MDT 2001","Thu Jun 14 11:41:37 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:41:37 MDT 2001","Thu Jun 14 11:41:37 MDT 2001","","","Mon Mar 5 13:46:31 MST 2001","Mon Jun 25 13:29:47 MDT 2001","Mon Mar 5 13:46:31 MST 2001","Mon Jun 25 13:21:18 MDT 2001","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 47-202 are 26% similar to PG1235, a conserved hypothetical protein.","Mon Jun 25 13:21:18 MDT 2001","Mon Mar 5 13:46:31 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 45 to 201 (E-value = 8e-29) place PG1234 in the Rhomboid family which is described as Rhomboid family (PF01694)","Mon Jun 25 13:21:18 MDT 2001","34541083","","","","","","1","","","PG1403" "PG1235","1487880","1487167","714","ATGAATAGCTTTAGAGAAAGGAATTATCAGTTTGCTCCACCCGTAACGCAGAACCTGATCATCATCAATGCGATATTCCTGTTCGCGACTTACGTACTTGAGGCACGATTCAATATCGATCTGAACGATACCATGGGGCTGCATTATTTTCAGGCAGACAGTTTCAATCCCATACAGTTCGTTTCCTATATGTTCTTACACGATGGCCTCTCGCATCTCTTCTTCAATATGTTTTCCCTATGGATGTTCGGACGGCTGATAGAGCAGTTTTGGGGGGCGAAGCGTTTCCTCATCTTCTATGTTATTTGTGGTCTTACGGCTGCATTGGCACAGCAGATCGTATGGGCTGTGGATCTGATGCCCATCGTGAACAGTCCGGCCGAGTTTGTTCGCTTTCCGGAGGGTACGGAGATGCTCAAGAGTGCTTTCCTCAATTTGCCAACGACGGTCGGTGCCTCCGGAGCCGTATTCGGGTTGCTATTGGCCTTCGGGATGCTCTTCCCCAATGGTGAGATCTACCTTTTCTTTATCCCCATTCCCATCAAAGCCAAGTGGTTTGTTATTATATACGGCCTTGTAGAGCTGTTCCTTGGTGTTGCACCGATGGCAGGTGGTAGCAACATCGCTCACTTTGCTCATTTGGGTGGTATGATAGGAGGTATTATACTCATTCTCCTCTGGCGCAGGAAAGGAGAGATCGATGGACCTTACAAT","6.70","-0.85","26888","MNSFRERNYQFAPPVTQNLIIINAIFLFATYVLEARFNIDLNDTMGLHYFQADSFNPIQFVSYMFLHDGLSHLFFNMFSLWMFGRLIEQFWGAKRFLIFYVICGLTAALAQQIVWAVDLMPIVNSPAEFVRFPEGTEMLKSAFLNLPTTVGASGAVFGLLLAFGMLFPNGEIYLFFIPIPIKAKWFVIIYGLVELFLGVAPMAGGSNIAHFAHLGGMIGGIILILLWRRKGEIDGPYN","1487880 1487167","TIGR ID: PG1404","conserved hypothetical protein","Inner membrane, Cytoplasm","One significant hit and numerous weak hits in gapped BLAST; e.g. residues 13-228 are 37% similar to gbAAF83459.1AE003909_12 conserved hypothetical protein of Xylella fastidiosa, residues 57-213 are 29% similar to gbAAC07308.1 hypothetical protein of Aquifex aeolicus, residues 53-213 are 27% similar to embCAA19250.1 putative integral membrane protein of Streptomycescoelicolor A3(2).","
InterPro
IPR002610
Family
Peptidase S54, rhomboid
PTHR22936\"[1-113]T\"[143-234]TPeptidase_S54_rhomboid
PF01694\"[51-232]TRhomboid


","BeTs to 10 clades of COG0705COG name: Uncharacterized membrane protein (homolog of Drosophila rhomboid)Functional Class: RThe phylogenetic pattern of COG0705 is am-kYqVceBRh-----l---Number of proteins in this genome belonging to this COG is 2","***** PF01694 (Rhomboid family) with a combined E-value of 5.1e-20. PF01694A 58-83 PF01694B 151-161 PF01694C 212-222","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon Mar 5 14:02:08 MST 2001","Mon Aug 4 13:00:13 2008","Mon Mar 5 14:02:08 MST 2001","Mon Mar 5 14:02:08 MST 2001","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 54-233 are 26% similar to PG1234, a conserved hypothetical protein.","Mon Mar 5 14:02:08 MST 2001","Mon Aug 4 13:00:13 2008","No significant hits to the PDB database (E-value < E-10).","","","Residues 52 to 232 (E-value = 1.7e-31) place PG1235 in the Rhomboid family which is described as Rhomboid family (PF01694)","Mon Mar 5 14:02:08 MST 2001","34541084","","","","","","1","","","PG1404" "PG1236","1490762","1487910","2853","ATGAGAGTATCCGATCTCTGTTCCAGACTTTCATGGTTATTACCCGTAATCCTTGTCGGATTGCTCTGTGCTACTTTGGTCGCTGCGGAACGTCCTATGGCCGGAGCAGTCGGATTGCACCACCGTCGGCATGCTGCGCTGTCTGATTCTACAGCGAAAGACACGGTGCCTCTCGCAAAACCTATTCCTGACAGTGCTTTTCGAGATTCCCTTCCTGCCGATTCCACCGGATCGATGCGGCAAGATAGCGTGTATGACGATGAATTCGAATTGGAAGATATAGTGGAGTACGAAGCTGCCGATTCCATCGTTTTGCTCGGACAGAATCGTGCCTATCTTTTCGGCAAGAGCTATGTGAGCTATCAAAAGAGTCGCTTGGAGGCAAACTTCATGTATCTCAATACCGACAGCAGTACGGTTTATACTCGCTATGTCCTCGATACGGCCGGTTATCCGATGGCCTTTCCTGTTTTCAAGGATGGAGAGCAGTCGTTCGAAGCCAAGAACTTTACCTACAACTTCCGCACGGAGAAGGGGATTATCAGCGGAGTGATCACGCAGCAGGGCGAAGGCTATCTGACTGCCGGTAAGACCAAGAAGATGCCCGACAATATCATGTTTATGCAAGGAGGGCGTTATACGACCTGCGACAATCACGATCATCCTCACTTCTATATCAATCTTTCCAAGGCAAAGGTGCATCCGGAGAAAGACATCGTCACAGGTCCGGTCAATCTGGTTATCGCCGATATGCCGCTGCCGATAGGTCTTCCTTTCGGCTATTTTCCCTTTTCCAACAAATACTCTTCCGGTATATTGATGCCCACGTACGGAGAGGACAATCGCTATGGATTTTATTTGAGGAATGGTGGATATTATTTTGCCTTCAGCGACTATATCGATTTGGCATTGCGTGGGGAGATCTTTTCCAAAGGGTCATGGGGCATTTCAGCCCAATCGAAATATAAGAAGAGGTATAAGTACAACGGCTCGTTCGAAGCCAATTATCTGGTATCGAAGTCCGGCGACAAATACGTGCCCGGAGACTACAGCAAGACCACCAGTCTGAATATCCGATGGACACACAGTCAGGATCCGAAGGCCAATCCTTTGCAAACGTTGTCGGCCAATGTCAATTTTGCCACCGGGAGCTATTTCCAGAATTCGCTGAATACCACCTATGATGTCAATGCCCGTACTGCTACGACACGAAGTTCGGCCGTGAGCTATTCGCGCAAGTTTCCGGGTACTCCTTTTTCGATTACGGGTAGCATGGATATCAGCCAGAACATGCGCGATACGACGGTGAGCCTTACCTTGCCGAATCTTTCGATTAATATGTCCACGCGTTATCCTTTCAAGCGGAAGACCCGTGTAGGACCGGAGCGATGGTACGAGAAGTTGAGTGTGGGCTATTCCGGTCAGCTTCGCAATAGTATCTTGACAAAAGAGAAAGATTTGCTCCAGAGCAATCTCGTGCGCGATTGGAAGAATGGTATGCGTCATTCCGTACCGATCAGTTTGACTGTCCCTTTGTTGGATTATATCAATCTGACTATGGGGGTTAACTACAATGAGTGGTGGTACACGAAAGGCATACGGAAGTCGTGGAATGAGGATAAGAAAACATTCCTGCCTTCGGACACGACCTATAAATTCCGCAGACTGTACGATTACAGTCTGTCGGCAGGCTTATCTACCACATTGTACGGTATGTTCAAGCCTTGGAAACCTTTTTCCTTCGGAGGCAATCTCATTATGATCCGTCATCGCTTCACGCCCACTGTCAGTTTCTCCTATATGCCGGACTTCACGAAACGCCGATATGGCTTTTGGGAGCTTCTTGAGCATACGGATCAGAACGGCAAGCTGCATACGCTGCTCTACTCTCCTTATTTCGAGCAGATATTCGGTGCTCCCTCCATGGGCAATGCAGGATCTGTCAATTTCTCTTTTGACAACAACTTAGAGGCCAAGATCAAATCCAAATCGGATTCGACAGGGATCAAGAAGATCAGCCTGATAGATCAGTTCACATGGTCTACATCCTATAATATGTTTGCCGATTCGATCCGATGGAGCAATATCTCGGCTTCGCTGGCACTTCGCCTCTCCAAGAGCTTTACCTTGCGCTTGTCCGGTCTGTTCGATCCCTATTTGACGAAGTATTATGAGGGAGAAGATGGGAAGATCATTCCCTATAAGAGCAACGACCTGCGCATTTTTAACGGCAAGGGATTGGCACGCCTGATCAGTACGGGTACTTCTTTCAGCTATACGCTCAACAAAGAGTCGCTCAGCGGATTGATAGCTCTTTTCAGTGGCAAAAAGGAGCGGAGAGATGAAAAGAAAAACACAGGGGCTACTCCTCATGAAGGAGACGATGCTGCCGATATACTTGAGGGAGGAAGACCGCAAAATGAAAGTGGGGGGTCGCTCCTCGAGCGCAACCGTCAGGGCGGAGCAGTGGATCAGGATGGTTACTTCGCATATTCGATCCCATGGAGCCTGTCCTTCGACTATAGTTGGAATATTGCTACCGACTACAATAGGTACAATGTCAATAAGATGGAGCACTACTACCGGGTAACGCAGAATCTGAGCTTTCGCGGCAATATCCAGCCTACACCGAACTGGAGCTTCGGATTCAATGCGAACTACAATTTCGACTTGAAGAAAATAACATCGCTTACCTGCAACGTCACTCGCGACATGCACTGCTGGGCTATCTCGGCCAGTTTCATCCCTATAGGAGCATACAAGTCCTATAATTTCGTCATATCGGTGAAGAGTTCACTCTTGCAGGATCTGAAGTATCAGCAGAGCAATCGTCCCATCACGAATACTTGGTAT","10.00","25.43","108031","MRVSDLCSRLSWLLPVILVGLLCATLVAAERPMAGAVGLHHRRHAALSDSTAKDTVPLAKPIPDSAFRDSLPADSTGSMRQDSVYDDEFELEDIVEYEAADSIVLLGQNRAYLFGKSYVSYQKSRLEANFMYLNTDSSTVYTRYVLDTAGYPMAFPVFKDGEQSFEAKNFTYNFRTEKGIISGVITQQGEGYLTAGKTKKMPDNIMFMQGGRYTTCDNHDHPHFYINLSKAKVHPEKDIVTGPVNLVIADMPLPIGLPFGYFPFSNKYSSGILMPTYGEDNRYGFYLRNGGYYFAFSDYIDLALRGEIFSKGSWGISAQSKYKKRYKYNGSFEANYLVSKSGDKYVPGDYSKTTSLNIRWTHSQDPKANPLQTLSANVNFATGSYFQNSLNTTYDVNARTATTRSSAVSYSRKFPGTPFSITGSMDISQNMRDTTVSLTLPNLSINMSTRYPFKRKTRVGPERWYEKLSVGYSGQLRNSILTKEKDLLQSNLVRDWKNGMRHSVPISLTVPLLDYINLTMGVNYNEWWYTKGIRKSWNEDKKTFLPSDTTYKFRRLYDYSLSAGLSTTLYGMFKPWKPFSFGGNLIMIRHRFTPTVSFSYMPDFTKRRYGFWELLEHTDQNGKLHTLLYSPYFEQIFGAPSMGNAGSVNFSFDNNLEAKIKSKSDSTGIKKISLIDQFTWSTSYNMFADSIRWSNISASLALRLSKSFTLRLSGLFDPYLTKYYEGEDGKIIPYKSNDLRIFNGKGLARLISTGTSFSYTLNKESLSGLIALFSGKKERRDEKKNTGATPHEGDDAADILEGGRPQNESGGSLLERNRQGGAVDQDGYFAYSIPWSLSFDYSWNIATDYNRYNVNKMEHYYRVTQNLSFRGNIQPTPNWSFGFNANYNFDLKKITSLTCNVTRDMHCWAISASFIPIGAYKSYNFVISVKSSLLQDLKYQQSNRPITNTWY","1490762 1487910","TIGR ID: PG1405","conserved hypothetical protein","Outer membrane, Extracellular","This sequence corresponds to gi:34397400 in Genbank.Its nearest neighbor in the NR database is gi:53715101 from Bacteroides fragilis YCH46.","
noIPR
unintegrated
unintegrated
signalp\"[1-29]?signal-peptide
tmhmm\"[10-30]?transmembrane_regions


","BeTs to 3 clades of COG1452COG name: Organic solvent tolerance protein OstAFunctional Class: MThe phylogenetic pattern of COG1452 is -----q--e--hUj--ol--xNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Dec 10 16:38:34 2003","Mon Mar 7 14:45:20 2005","Mon Mar 5 14:05:47 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Mar 5 14:05:47 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Mar 5 14:05:47 MST 2001","34541085","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Mon Mar 7 14:45:20 2005","","1","","","PG1405" "PG1236.1","1491088","1490762","327","TTGCACAATAAGCAGGCACTTTTGTTCATTCTTTTTATTTCTGTGTCAGGCGACTATTTGGTACACACCGGTTTTCCACCGGTGGAAATTTACTCCCCTTTAATGAGTGCCCCTTTGAGACGTCCAACGACGTTACCGCCGGCAACATATCTTTTCCCTCTTAAAGGCCAATATGAAGTCCTCAATCCCTCGTATTCAGAAGAAACTCGCTCGAATGAAGCCGCAAACCAATTTAATGCGTCGGCCCCGGGGCAGCCTGTACAACCTCATCGTGTATTACAACTTCTTTTTTACCTTTGCTCACCTGTGAGTATGAATGAATCCGAA","","","12176","LHNKQALLFILFISVSGDYLVHTGFPPVEIYSPLMSAPLRRPTTLPPATYLFPLKGQYEVLNPSYSEETRSNEAANQFNASAPGQPVQPHRVLQLLFYLCSPVSMNESE","","NO TIGR ID corresponds to this gene.","hypothetical protein","Periplasm","No significant hit found in gapped BLAST with E value less than e-04.","
noIPR
unintegrated
unintegrated
signalp\"[1-17]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Mon Mar 5 14:11:11 MST 2001","","Mon Mar 5 14:11:11 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1-88 are 52% similar to PG1241.1, a hypothetical protein.","Mon Mar 5 14:11:11 MST 2001","Mon Mar 5 14:11:11 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Mar 5 14:11:11 MST 2001","","","","","","","1","","","" "PG1237","1491741","1491208","534","ATGCGGCGTAAAGATCGAGAAATGAGCCGAGAATTCGGTTTGGAGGTAATTAATCGGGCAGCCTACGGTGTCCTTTCTGTCGTGGATTCGGACGGTGCACCCTATGCTTTGCCTCTTTCCATCGTGCGCGATGGGGAGAATTTGTATTTTCATTCGGCACGTGCCGGACACAAAGTCGAATTATTCAACCATGAGCCTTCGGCCACCATTGTATTTGTAGGCCGAGTGGAGGTACCCGATGTATATACTTCGGAAGTACTGGAATCGCTACAAGAGGGAGACTCCCGCTTATCCGGCTCTATGCTGAGTCGAATTTTCACCACCGATTTCGAGAGTGCTATAGTCAAGGGGCAAGTCATTCGTGTAGCAGATCATGAGGAGTGCGTGCATGCCTTACGATTGATATGCGAGAAGTACACGCCAGAGAAAATGGATTTGTTCGATAAGGCCGTTGAAAGCGGCATGCCACATACCGCTATCTATCGCATTAAAATAGATATGATCACAGCGAAACGAAAGCTTGTTCTCCCCGAC","6.00","-3.64","20042","MRRKDREMSREFGLEVINRAAYGVLSVVDSDGAPYALPLSIVRDGENLYFHSARAGHKVELFNHEPSATIVFVGRVEVPDVYTSEVLESLQEGDSRLSGSMLSRIFTTDFESAIVKGQVIRVADHEECVHALRLICEKYTPEKMDLFDKAVESGMPHTAIYRIKIDMITAKRKLVLPD","1491948 1491208","TIGR ID: PG1407","possible nitroimidazole resistance protein","Cytoplasm","Several weak hits to nitroimidazole resistance proteins in gapped BLAST; e.g. residues 1-176 are 30% similar to emb|CAA50578.1| nimB of Bacteroides fragilis, residues 1-176 are 27% similar to pir||I40599 5-Nitroimidazole antibiotics resistance protein of Bacteroides vulgatus, residues 1-171 are 28% similar to emb|CAB82516.1| nitroimidazole resistance protein of Bacteroides fragilis.","
InterPro
IPR009002
Domain
FMN-binding split barrel, related
SSF50475\"[13-168]TFMN_binding
InterPro
IPR011576
Domain
Pyridoxamine 5'-phosphate oxidase-related, FMN-binding core
PF01243\"[9-94]TPyridox_oxidase
InterPro
IPR012349
Domain
FMN-binding split barrel
G3DSA:2.30.110.10\"[2-178]TPNPOx_FMN_bd


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 1-176 are 32% similar to a (GENE INSERTION SEQUENCE IS1168 FOR 5-NITROIMIDAZOLE) protein domain (PD016519) which is seen in Q45146_BACFR.","","Thu Jun 14 11:42:12 MDT 2001","","Thu Jun 14 11:42:12 MDT 2001","Thu Jun 14 11:42:12 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:42:12 MDT 2001","Thu Jun 14 11:42:12 MDT 2001","","","Mon Jun 25 13:32:41 MDT 2001","Mon Jun 25 13:32:41 MDT 2001","Mon Mar 5 14:26:53 MST 2001","","Mon Jun 25 13:32:41 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Mar 5 14:26:53 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jun 25 13:32:41 MDT 2001","34541086","","","Haggoud,A., Reysset,G., Azeddoug,H. and Sebald,M. 1994. Nucleotide sequence analysis of two 5-nitroimidazole resistancedeterminants from Bacteroides strains and of a new insertionsequence upstream of the two genes. Antimicrob. Agents Chemother. 38 (5): 1047-1051. PubMed: 8067736.","","Mon Mar 5 14:31:12 MST 2001","1","","","PG1407" "PG1238","1492004","1492966","963","ATGGAAACAAAACAATCTCACGCCCACGCCTGTTGCTCGGAGCACAAACATGAACATGAGGCACATCATCACGGACATCATCACCATCATCACCATCATGGCGAAAGTGGAAGCAATTTGCTTTTTGCTTTCGCTATGAACCTCTTCTTTGCTATCGTAGAGTTGGTAGGCGGTATTTTCACCGGAAGTGTAGCCATCCTGTCAGATGCCTTACATGATTTCGGTGATTCCATTTCGCTCGGCATTGCCTGGCGACTGCAGAAACTATCGGAAAAGGGTCGCGACAGATCTTTCAGTTATGGCTACAAACGCTTCTCTCTGCTCGGTGCACTGCTTATTTCAATCATTCTTCTGGTAGGATCCGTTTTTGTCATCATTGCAGCCGTACAACGTTTCTCCATGCCGGGAGAGCCCAAAGCAGGAGGGATGCTTATTCTGGCCATATTCGGACTGGTAGTCAATGGCTTGGCCGCACTCAGACTAAAAGGAAGCTCTTCGCTGAACGAACGTGCCGTGATGCTACACCTTCTGGAAGATGTGCTCGGATGGGCAGCCGTGCTTGTAGTCAGCATCGTTATGCTCTTTGTCAATGCCCCGATCCTCGACCCGATACTTTCTCTATGTATCACGGCATGGATCCTGTACAATGTGTATGGCAACCTGCGTGAGACCTTCAAAGTCTTGCTGCAAGGTGTACCCGATGGGATAGACTTAGAGGGATTAAAGACGGATATACTCTCTCTGCCACATATACGTAGCGTTCACGACATCCACCTATGGACACTCGACGGAGAGTCGCACGTGATGACGATTCACGTTGTGTACTGCCCGGACGATTTCAGTTCGCCCCAAGCAGTATTCGATATGAAAGAATCAGTACGGGAGAAGTGCAGTGCCCACGGAATACGACATGCTACAATAGAATTGGATCCCGAGGGTTGCTCTTGTGGGATGGAAAGCTGC","6.60","-5.36","35227","METKQSHAHACCSEHKHEHEAHHHGHHHHHHHHGESGSNLLFAFAMNLFFAIVELVGGIFTGSVAILSDALHDFGDSISLGIAWRLQKLSEKGRDRSFSYGYKRFSLLGALLISIILLVGSVFVIIAAVQRFSMPGEPKAGGMLILAIFGLVVNGLAALRLKGSSSLNERAVMLHLLEDVLGWAAVLVVSIVMLFVNAPILDPILSLCITAWILYNVYGNLRETFKVLLQGVPDGIDLEGLKTDILSLPHIRSVHDIHLWTLDGESHVMTIHVVYCPDDFSSPQAVFDMKESVREKCSAHGIRHATIELDPEGCSCGMESC","1492004 1492966","TIGR ID: PG1408","cation transport protein (cation efflux system protein)","Inner membrane, Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 52-310 are 39% similar to gb|AAK05705.1|AE006391_4 cation transport protein of Lactococcus lactis subsp. lactis, residues 52-310 are 34% similar to gb|AAG09968.1|AF248037_3 cation efflux system protein of Streptococcus agalactiae, residues 52-315 are 31% similar to gb|AAG03786.1|AE004477_3 probable cation efflux system protein of Pseudomonas aeruginosa. ","
InterPro
IPR002524
Family
Cation efflux protein
PTHR11562\"[26-312]TCation_efflux
PF01545\"[40-316]TCation_efflux
TIGR01297\"[36-314]TCDF


","BeTs to 5 clades of COG1230COG name: Co/Zn/Cd efflux system componentFunctional Class: PThe phylogenetic pattern of COG1230 is ---kyqv-eb-----------Number of proteins in this genome belonging to this COG is 1","***** PF01545 (Cation efflux family) with a combined E-value of 1.9e-13. PF01545A 63-90 PF01545B 202-230 PF01545C 250-257","Residues 166-312 are 32% similar to a (PROTEIN TRANSMEMBRANE ZINC TRANSPORTER CATION TRANSPORT) protein domain (PD001369) which is seen in O67168_AQUAE.Residues 52-154 are 37% similar to a (PROTEIN TRANSMEMBRANE ZINC TRANSPORTER) protein domain (PD001602) which is seen in O07084_BACSU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon Mar 5 14:50:07 MST 2001","Mon Mar 5 14:50:07 MST 2001","Mon Mar 5 14:50:07 MST 2001","Mon Mar 5 14:50:07 MST 2001","Mon Mar 5 14:50:07 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Mar 5 14:50:07 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 40 to 316 (E-value = 4.5e-78) place PG1238 in the Cation_efflux family which is described as Cation efflux family (PF01545)","Tue May 8 16:02:16 MDT 2001","34541087","","","","","","1","","","PG1408" "PG1239","1493358","1492969","390","ATGGCAGGGGCCTACCCGGCTTTGCTTTACACAAATGAAAAAGCCGATGCTTTGTATGAAGTCGTATCGTCGCTTTTAGGCGAGTGGATAGTATCGGGAGATCCATGGATTGACCTCTCTTTGGTTTTTCACGATGTGGAGGGAGGACAACCCGAAGGCGATTTGGAGGTTGTACTCTCCTCTCATCTAAACGAAGAAGATATTATGCCTGTACCGTCCCTCTTCTTGTATGATATGGGATGCTATCTTTTGGAGGCAGCCGCTGCATGGATAGCTGATCAAGAAGCATATGGGATGCAAACGGTGATCGAGCGAAAAGATATCAGCCGCAGACCCTCGGAAAAAGGACTGCGGCTGGTAGGGCATTGGATTTTGAAGGCAATCGAATGT","4.10","-13.37","14439","MAGAYPALLYTNEKADALYEVVSSLLGEWIVSGDPWIDLSLVFHDVEGGQPEGDLEVVLSSHLNEEDIMPVPSLFLYDMGCYLLEAAAAWIADQEAYGMQTVIERKDISRRPSEKGLRLVGHWILKAIEC","1493484 1492969","TIGR ID: PG1409","hypothetical protein","Cytoplasm","This sequence corresponds to gi:34397403 in Genbank.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 11:42:21 MDT 2001","","Thu Jun 14 11:42:21 MDT 2001","Thu Jun 14 11:42:21 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:42:21 MDT 2001","Thu Jun 14 11:42:21 MDT 2001","","","","Mon Mar 7 14:49:19 2005","Mon Mar 5 14:54:41 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Mar 5 14:54:41 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Jun 14 11:42:21 MDT 2001","34541088","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Mon Mar 7 14:49:19 2005","","1","","","PG1409" "PG1240","1495259","1493577","1683","ATGAATATGCAATGGCTTAATGACTTGCTTTTCGGTGTAGGAGTGGGGCACTCCATTCTCTTGGTCGCCGTAACGATTGCCTTAGGGATTTGGTTGGGAAAGATAAAGATCTTCGGAATTTCTTTGGGGGTTACTTTCGTTCTTTTTGTCGGAATAGTCTTAGGACATTTCGGCATGAATCTGCATCCTGACGTACATCATTTCTTCAAAGAGTTCGGACTGATCCTATTCGTTTACTCGGTGGGGATGCAAGTGGGCCCGGGTTTTTTCTCCTCTCTTCGCAAGGGGGGGCTTACCTTGAACCTACTGGCTATGGGCGTCGTCTTTCTGGGGGTACTGACAACGGTGATTCTGCACTTCGTGACAGGCATATCCATGTCCACAATGGTAGGAATTCTGTCCGGTGCCGTCACGAACACACCGGGCCTGGGAGCTGCCGAGCAGACATTCCATGATCTAACGGGAACCGGCGATCCGACTATCACACTCGGTTATGCTGTGGCTTATCCGCTCGGAGTGGTGGGGATTATTGCGTCCATGCTGATCGTACGAGCTATTTTCAAGATCAGTGTGGCCAAAGAGAAAGAGAAGATGGACAGTCTGGAACATAACGATGATAATCAGGCTATCGCACTCTCTCTGGTTGTAAAAAATCCGGCCGTTTTCTCCAAAACATTAGCGGAAGTCCGCCAACTGCTCAAAGGTCATGACTACGTGATTTCGCGCACAATGGATTCGCGTACCAACAGTATTTCGCTGGCACATTCGGATACGGTTCTAAATGAAAACGACAGGGTTTTCGTAATTACCAATCCGCAAAATACTGCGGTGATTAGCAGCTTCATCGGGACAGAGGTACAGATGGATAGGAAGCAGTGGATACCTACCGAGTCGCATTTGGTGAGCCGCCGATTCATCGTCACGAAGTCCGAATTGAATGGAAAGACCCTCGGTTCATTGCAGCTACGCAAAATGCATGGCATGAATGTGACACGTGTGAACCGTGCCGGAGTTGAGATGGTAGCATTGGCTTCCCTTCCGCTACAGGTGGGCGATCGTCTGACTGTAGTGGGCAGTGAGTTAGTAATGCCCAAAGTGGAAGAACTGATCGGTAATTCTGTCAAACGACTGAACGAACCGAACCTAATGTCCATATTCATCGGCATCGGTCTCGGTATCCTTTTGGGTTCGCTTCCGATCGTTTTGCCCGGTATTCCTCAGCCCGTCAAGCTGGGACTTGCTGGTGGCCCATTGGTGGTGGCTATTCTATTGAGTCGGTTCGGTTATCGGTATAAGCTGGTGACTTATACGACTCCCAGTGCCAATTTGATGTTGAGAGAAATCGGCATCACCATATTCTTGGCTTGCGTAGGATTGGGGGCCGGAGAGGGGTTCGTCGATACGATAGTAAACAAAGGTGGTTTTACATGGATCGGATACGGTTTTATAATCACCCTCCTGCCTCTCCTTATCATCGGATTTATCGCTTGCAAAGGATATAAGATCAATTATCTTACGCTGATGGGAATGTTGGCCGGAAGTACTACAGACCCACCTGCCCTGGCATACGCCAACAACACGACTAACCACGATGCTCCGGCCGTAGGCTACGCCACGGTCTATCCTCTGACCATGTTCTTGAGGGTGCTGACTGCACAATTGCTTATCTTATTCTTTTGCTCT","9.80","9.99","60369","MNMQWLNDLLFGVGVGHSILLVAVTIALGIWLGKIKIFGISLGVTFVLFVGIVLGHFGMNLHPDVHHFFKEFGLILFVYSVGMQVGPGFFSSLRKGGLTLNLLAMGVVFLGVLTTVILHFVTGISMSTMVGILSGAVTNTPGLGAAEQTFHDLTGTGDPTITLGYAVAYPLGVVGIIASMLIVRAIFKISVAKEKEKMDSLEHNDDNQAIALSLVVKNPAVFSKTLAEVRQLLKGHDYVISRTMDSRTNSISLAHSDTVLNENDRVFVITNPQNTAVISSFIGTEVQMDRKQWIPTESHLVSRRFIVTKSELNGKTLGSLQLRKMHGMNVTRVNRAGVEMVALASLPLQVGDRLTVVGSELVMPKVEELIGNSVKRLNEPNLMSIFIGIGLGILLGSLPIVLPGIPQPVKLGLAGGPLVVAILLSRFGYRYKLVTYTTPSANLMLREIGITIFLACVGLGAGEGFVDTIVNKGGFTWIGYGFIITLLPLLIIGFIACKGYKINYLTLMGMLAGSTTDPPALAYANNTTNHDAPAVGYATVYPLTMFLRVLTAQLLILFFCS","1495283 1493577","TIGR ID: PG1411","potassium uptake protein","Inner membrane, Cytoplasm","This sequence corresponds to gi:34397405 in Genbank.Its nearest neighbor in the NR database is gi:53713798 from Bacteroides fragilis YCH46.","
InterPro
IPR006037
Domain
TrkA-C
PF02080\"[210-283]T\"[301-371]TTrkA_C
PS51202\"[196-284]T\"[286-372]TRCK_C
InterPro
IPR006512
Domain
YidE/YbjL duplication
PF06826\"[21-185]T\"[384-557]TAsp-Al_Ex
TIGR01625\"[26-171]T\"[389-543]TYidE_YbjL_dupl
noIPR
unintegrated
unintegrated
SSF51735\"[174-284]T\"[301-372]TSSF51735


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 369-561 are 48% similar to a (PROTEIN TRANSMEMBRANE HI0035 ORF H1224 PLASMID GLVC-IBPB) protein domain (PD008628) which is seen in YIDE_HAEIN.","","Thu Jun 14 11:42:42 MDT 2001","","Thu Jun 14 11:42:42 MDT 2001","Thu Jun 14 11:42:42 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:42:42 MDT 2001","Thu Jun 14 11:42:42 MDT 2001","","","Mon Mar 7 15:07:08 2005","Mon Mar 7 15:07:08 2005","Mon Mar 5 15:13:24 MST 2001","","Mon Jun 25 13:34:09 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 5-559 are 41% similar to PG0508, a conserved hypothetical protein.","Mon Jun 25 13:34:09 MDT 2001","Mon Mar 5 15:13:24 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 21 to 185 (E-value = 5.7e-55) place PG1240 in the Asp-Al_Ex family which is described as Predicted Permease Membrane Region (PF06826)Residues 210 to 283 (E-value = 5.7e-05) place PG1240 in the TrkA_C family which is described as TrkA-C domain (PF02080)Residues 301 to 371 (E-value = 4.1e-13) place PG1240 in the TrkA_C family which is described as TrkA-C domain (PF02080)Residues 384 to 557 (E-value = 6.8e-58) place PG1240 in the Asp-Al_Ex family which is described as Predicted Permease Membrane Region (PF06826)","Wed Dec 10 14:41:38 2003","34541090","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Mon Mar 7 15:07:08 2005","","1","","","PG1411" "PG1241","1495698","1495949","252","TTGAAAGGGAAAGAAACGGATCCTTGTGGCAGTAAAGTCGGATTGACCACAAGTGCATTCTCTCCCGGCTTTTCCTCGAAGCCGCAGACAAAGACTTTGCAGGTCTTCTGGCTCACCCCATACTTCCGACTCCTTCCCATCCGCACAGAACGGACAGTGGATATAAATGCCGAAAGCTTAACAAGGTTCACAGCAGCGGGACTGCTCGGGATTTTCACCCGATTCCCTTTTAATCATCACCACCGATCCCAA","11.10","6.65","9437","LKGKETDPCGSKVGLTTSAFSPGFSSKPQTKTLQVFWLTPYFRLLPIRTERTVDINAESLTRFTAAGLLGIFTRFPFNHHHRSQ","1495698 1495949","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No hit found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","","Mon Mar 5 15:15:35 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Mar 5 15:15:35 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu May 31 15:57:00 MDT 2001","","","","","","","1","","","" "PG1241.1","1496111","1496410","300","ATGGGACCTTTGCACAATAAGCAGGCACTTTTGTTCATTCATTTTATGTGTGTCAGACGACCATTTAGTACACGTCAGTTACCGCCGGCAACATATCGTTTCCCCCTTAAAGGCCAATATGAAGTCCTCAATCCCTCGTATTCAGAGAAGAAACTCGCTCGAATGAAGCCGCAAAACCGATTTAATGCGTCGGCCCCGGGGCAGCCTGTCAGGACGATCGCGTTTGAAAATTTTTTAGTTTTCAACAACGAAGCGGAATTTGGAATGATTCTAAATAAGCACCTGAAAGGGAACGGATTT","","","11539","MGPLHNKQALLFIHFMCVRRPFSTRQLPPATYRFPLKGQYEVLNPSYSEKKLARMKPQNRFNASAPGQPVRTIAFENFLVFNNEAEFGMILNKHLKGNGF","","NO TIGR ID corresponds to this gene.","hypothetical protein","Periplasm","No significant hit found in gapped BLAST with E value less than e-04.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Mon Mar 5 14:16:07 MST 2001","","Mon Mar 5 14:16:07 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 4-71 are 52% similar to PG1236.1, a hypothetical protein. ","Mon Mar 5 14:16:07 MST 2001","Mon Mar 5 14:16:07 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu May 31 15:59:15 MDT 2001","","","","","","","1","","","" "PG1241.2","1496490","1496188","303","TTGTATATAGATCGTTATCTTGTCTCCCATAAACCATATTTTGACCTGAAAAAGTTCGTTTCTTCATATTTTCGACATCAAAATCCGTTCCCTTTCAGGTGCTTATTTAGAATCATTCCAAATTCCGCTTCGTTGTTGAAAACTAAAAAATTTTCAAACGCGATCGTCCTGACAGGCTGCCCCGGGGCCGACGCATTAAATCGGTTTTGCGGCTTCATTCGAGCGAGTTTCTTCTCTGAATACGAGGGATTGAGGACTTCATATTGGCCTTTAAGGGGGAAACGATATGTTGCCGGCGGTAAC","","","11727","LYIDRYLVSHKPYFDLKKFVSSYFRHQNPFPFRCLFRIIPNSASLLKTKKFSNAIVLTGCPGADALNRFCGFIRASFFSEYEGLRTSYWPLRGKRYVAGGN","","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No hit found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Mon Mar 5 15:24:02 MST 2001","","Mon Mar 5 15:24:02 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1-48 are 56% similar to PG1082.1, a hypothetical protein.","Mon Mar 5 15:24:02 MST 2001","Mon Mar 5 15:24:02 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Mar 5 15:24:02 MST 2001","","","","","","","1","","","" "PG1241.3","1496863","1497147","285","TTGGCAGCGACATCCAACTTCCGACAGAGAGCTTCATCGGGCGACAAATGTAAGAAAATATTCAGTCTCGGGAGATTTGAAAAAATCGGGTCGTTAGCATCAAAATCCGTGCCCCGAGTGGCCTGTATTTTGATGCAGTTGCCTTATTTTGGTTTTGAGCAAGTTCCAAACCTGCTTTCGATCAAACACACAGGGTGTACCAAAAATAATTTCGACAGACACTCCTCTAATGTTTCTGGATTATCTTTGTACAAAAATCAGGCAGAGATGCCTTTAAGTCGAATC","","","10520","LAATSNFRQRASSGDKCKKIFSLGRFEKIGSLASKSVPRVACILMQLPYFGFEQVPNLLSIKHTGCTKNNFDRHSSNVSGLSLYKNQAEMPLSRI","","NO TIGR ID corresponds to this gene.","hypothetical protein","Outer membrane, Periplasm","No hit found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","","","Mon Mar 5 15:25:17 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Mar 5 15:25:17 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu May 31 16:01:09 MDT 2001","","","","","","","1","","","" "PG1242","1497152","1499764","2613","TTGTTATGTCTTATGAGAAAAAGAATTCTACAACTTTTCCTGACCGCATTGCTGCTGGCATTAGGCTCCTCTCTCGCCATAGCGCAAACAGTGGTGACCGGTAAGGTGATCGATTCAGAAACGTCCGAACCGCTCATCGGTGTATCCGTAAGCACCGGTCAGGGAGCATCCCTCCGCGGTGTAACCACCGATATGGATGGTGGCTTCCGATTCGAAGTACCGGCCAAATCTGTCTTGACTTTCCGTTGCGTAGGTTATGCTACCGTAACTCGCTCTATAGGCAGAGGTTCTCAAGAAGACCTCGGTACGATTCTCCTCGATCCCCAGGCCATCGGCTTGGATGAGATTCAGGTAATAGCCTCTGTGGTGCCCAAAGACCGTATGACGCCGGTACCCGTTTCCAATATCCGTGTGGCTGATATTCAGGCAGCATCGTTGAATGTCGAATTTCCCGAACTGGTTAAATCCACTCCCTCTACCTATACGACAAAAGGAAGCGGAGGTTTCGGTGATGGTCGTACCAATGTGCGTGGATTCGACACTTACAACTTCGGTGTACTCATCAACGGAGTTCCTGTCAATGGTATGGAAGACGGGAAAGTATATTGGAGCAATTGGAGTGGTCTGATGAATCAAGCCAGTACCATTCAGATTCAGCGCGGACTCGGAGCCTCCAAGCTCGGTATCAGCTCGGTAGGTGGTACGATGAACATTATCACGAAGACTACGGACGCCAACACCGGAGGTTCGGCTTATGTCGGTATGGGTAATGATGGATTGCACAAAGAATCGTTCTCCATTTCTACGGGTATGAACGACGGTTGGGCTATCACCATTGCAGGCTCCCATATGACGGGTCTGGGTTATGTGAAGGGGCTGAAGGGACGTGCATTCTCTTACTTCTTCAACGTTTCGAAGAAGTTCAATGAACGTCATACCCTCTCTCTTACCGGATTCGGTGCACCACAATGGCACAACCAACGTTCTTCCAAATATTCTGTAGCCGACTATGACAAATACGGCATCCGTCACAATCAATCCTTCGGCTATCTGCGAGGCGAACTGACTCCTACGGCTTATGCTTACAATACGTACCACAAGCCCCAGTTCTCGCTGAACCACTTCTGGAAGATGGATGAAAATACCTCTCTTTATACCGCAGCCTACGCATCTTTGGCTACCGGTGGAGGTCGTCGCGCTTATGGAAAGAACAGTAAGTGGGTATTGATCAACTACAACACCGGACAACCCTATGAACAAACAAAGGTGACTCCCGATGGACTTATCGACTACGATGCCGTACTGGCTGCCAATGCTGCGGCGAGCAATGGCTCGGAAGCAATTTTTGCCCTTGGCTCCAACTCTCACAAGTGGTTCGGTCTACTCTCTTCATTCAAGAAGAAACTTAATAGTTCGCTGACTTTGACAGCCGGATACGATGGGCGTTACTACCGTGGCGACCACTATGACAAGATCACCGATCTGCTCGGCGGTAGCTACTACATAGAGGATCCCAAGACAAAGCTCGCATACCATGCGGAAGGTCAGCAACTGAAAGTGGGTGACATTGTAAATCGGGACTACACAGGCGAAATCATGTGGCACGGCCTCTTCGCACAGATGGAGCATTCGTCCGAATGGATCGATGCATTCGTATCAGGATCTATCAACTACGAACTATACCGCAATCACAACTATGGCGGTAGCAAGTCCACCGGCTACCTGCCCGGCGTATCGCCGTGGAAAAGCTTCCTTCCGTGGAGTGGCAAGGCAGGTCTGAGCTACAAGTTCGCACAGGGACACAATGTATTCGCCAATGGCGGTTTCTTCACACGTGCACCACTCTTTGGCAATATCTATGCTGCGGGGGCTATCATTCCCAATGACAAAGCCAATATGGAAAAGGTGCTTACAGGAGAGGTCGGCTATGGATTCACGAATCACAAAAACTTCGAGTTCAATATCAACGGATACTATACGAAGTGGATGGATCGCGTGACCTCGAAGAGAATCGGAAACGAGTATGTTTATCTCAATGGCGTTGATGCTGTTCACTGTGGGGTAGAGGCTGAGGTCAGCTATCGTCCTATTCGTCAGATCGACCTTCGCGGTATGTTCTCTCTCGGTGACTGGACTTGGCAAAACAATGTAAGTTACACTTCTTACGACGAAGCCGGCAATGAGACAGGGCAGGATATAACCTATATCAAGGGTCTTCACGTCGGAGATGCAGCACAGATGACGGCTGCTGTATCGGCAGACATAGAGCTGTTCAAGGGTTTCCATGTCATAGGTAAGTACAACTTCCTTGGCAAGAACTATGCAGGATTCAACCCCGCAACGCGTAATGCACAGCAGTACGAAGCGGATGGCAAAGAAATCGTGGAATCATGGAAGTTGCCCGATGTAGGTCTGTTCGATCTGTCTGCATCCTACAATTTCAAGCTTGGTTCACTCAGCACCACATTCTATTTCAACATGGACAACGTAGCCGACAAGCGATATGTGAGCGATGCCGACGACAATATCATCGGTAAGAAACACGATGAGGCTTCGGCTCTCGTATGGTACGGTTTCGGCCGCACTTGGTCTACCGGTATTCGTGTAAACTTC","8.30","6.48","95597","LLCLMRKRILQLFLTALLLALGSSLAIAQTVVTGKVIDSETSEPLIGVSVSTGQGASLRGVTTDMDGGFRFEVPAKSVLTFRCVGYATVTRSIGRGSQEDLGTILLDPQAIGLDEIQVIASVVPKDRMTPVPVSNIRVADIQAASLNVEFPELVKSTPSTYTTKGSGGFGDGRTNVRGFDTYNFGVLINGVPVNGMEDGKVYWSNWSGLMNQASTIQIQRGLGASKLGISSVGGTMNIITKTTDANTGGSAYVGMGNDGLHKESFSISTGMNDGWAITIAGSHMTGLGYVKGLKGRAFSYFFNVSKKFNERHTLSLTGFGAPQWHNQRSSKYSVADYDKYGIRHNQSFGYLRGELTPTAYAYNTYHKPQFSLNHFWKMDENTSLYTAAYASLATGGGRRAYGKNSKWVLINYNTGQPYEQTKVTPDGLIDYDAVLAANAAASNGSEAIFALGSNSHKWFGLLSSFKKKLNSSLTLTAGYDGRYYRGDHYDKITDLLGGSYYIEDPKTKLAYHAEGQQLKVGDIVNRDYTGEIMWHGLFAQMEHSSEWIDAFVSGSINYELYRNHNYGGSKSTGYLPGVSPWKSFLPWSGKAGLSYKFAQGHNVFANGGFFTRAPLFGNIYAAGAIIPNDKANMEKVLTGEVGYGFTNHKNFEFNINGYYTKWMDRVTSKRIGNEYVYLNGVDAVHCGVEAEVSYRPIRQIDLRGMFSLGDWTWQNNVSYTSYDEAGNETGQDITYIKGLHVGDAAQMTAAVSADIELFKGFHVIGKYNFLGKNYAGFNPATRNAQQYEADGKEIVESWKLPDVGLFDLSASYNFKLGSLSTTFYFNMDNVADKRYVSDADDNIIGKKHDEASALVWYGFGRTWSTGIRVNF","1497152 1499764","Ross, et al.(2001) select PG1242 as one of fifteen vaccine candidate antigens, based on in vitro and in vivo laboratory studies of 120 candidates screened by bioinformatics techniques from the whole W50 genome. Veith et al. (2002) identified this protein by two-dimensional gel electrophoresis and peptide mass fingerprinting of outer membranes prepared from strain W50. They present the following results: Based on signal peptide sequence comparisons to PG0626, PG0627, PG1592, PG1840, PG0836, PG0023, PG1893, the mature N-terminus of this protein is predicted to be pyroglutamate.See PG0621.TIGR ID: PG1414","tonB-linked outer membrane receptor PG47","Outer membrane, Extracellular","This sequence corresponds to the previously published AF237557 in GenBANK.","
InterPro
IPR000531
Domain
TonB-dependent receptor
PF00593\"[588-871]TTonB_dep_Rec
InterPro
IPR010917
Domain
TonB-dependent receptor, C-terminal
PS01156\"[854-871]?TONB_DEPENDENT_REC_2
InterPro
IPR012910
Domain
TonB-dependent receptor, plug
PF07715\"[125-235]TPlug
noIPR
unintegrated
unintegrated
G3DSA:2.170.130.10\"[109-239]Tno description
G3DSA:2.40.170.20\"[240-871]Tno description
signalp\"[1-28]?signal-peptide
tmhmm\"[9-29]?transmembrane_regions


","BeTs to 3 clades of COG1629COG name: Outer membrane receptor proteins, mostly Fe transportFunctional Class: PThe phylogenetic pattern of COG1629 is -----q-CE--HUJ-------Number of proteins in this genome belonging to this COG is 8","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Thu Feb 7 16:13:47 2002","Fri May 4 17:52:47 MDT 2001","Thu Dec 7 12:33:26 MST 2000","Wed Nov 7 14:05:10 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 111-774 are 22% similar to PG1655, a probable tonB-linked outer membrane receptor PG47. Similarities are also seen to PG1752 and PG0170, both ton-B linked outer membrane receptor proteins.","Mon Mar 5 15:59:19 MST 2001","Mon Mar 5 15:53:29 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 127 to 871 (E-value = 2.2e-92) place PG1242 in the TonB_dep_Rec family which is described as TonB dependent receptor (PF00593)","Wed Nov 7 14:06:07 2001","34541091","","Veith,P., Talbo,G., Slakeski,N., Dashper,S., Moore,C.,Paolini,R., Reynolds,E., Major outer membrane proteins and proteolytic processing of RgpA, and Kgp of Porphyromonas gingivalis W50, Biochem J. 2002 (in press).Ross BC, Czajkowski L, Hocking D, Margetts M, Webb E, Rothel L, Patterson M, Agius C, Camuglia S, Reynolds E, Littlejohn T, Gaeta B, Ng A, Kuczek ES, Mattick JS, Gearing D, Barr IG, Identification of vaccine candidate antigens from a genomic analysis of Porphyromonas gingivalis, Vaccine 2001 Jul 20;19(30): 4135-42, PMID: 11457538.Ross,B., Barr,I., Patterson,M., Agius,C., Rothel,L., Margetts,M.,Hocking,D. and Webb,E. P. gingivalis polypeptides and nucleic acids. Patent: Australia (AU 98/01023)-PCT 10-DEC-1998;","","Thu Feb 7 16:12:43 2002","","1","","","PG1414" "PG1243","1500200","1501138","939","ATGAATAGAATTTGCGAATTATTGGGTATCGAACATCCGATCATATCGGGAGGCATGGTGTGGTGCAGCGGTTGGAAACTGGCTTCTGCTGTGAGCAACTGCGGTGGTTTGGGACTTATTGGTGCCGGATCCATGCATCCGGACAATCTGGAGCATCACATCCGTTCGTGTAAAGCTGCTACAGACAAGCCTTTCGGTGTGAACGTGCCTCTTCTCTATCCGGAGATGGACAAAATCATGGAGATTATCATGAGGGAACATGTGCCCGTAGTGGTAACGTCAGCCGGTAGTCCAAAGGTGTGGACAGCCAAGTTGAAAGCTGCCGGTAGCAAGGTGATACATGTAGTGAGCAGTGCCACATTCGCTCGCAAATCAGAGGCAGCCGGTGTAGACGCCATCGTGGCCGAAGGGTTCGAAGCCGGCGGACATAATGGACGAGAGGAGACTACGACCCTCTGTTTGATACCTGAAGTAGTGGATGCTGTGAACATTCCTGTGGTTGCTGCCGGAGGGATTGCTTCCGGCCGTGCAGTTGCCGCTGCTTTGGCTTTGGGTGCCGATGCCGTACAAGTGGGGACCCGTTTTGCTCTGAGTGAGGAAAGTTCGGCGCATGAAGACTTTAAGGCACATTGCCGCCGGTCGGTGGAGGGAGATACGATGCTTTCGCTCAAGGCTGTATCGCCTACGCGACTGCTGAAGAACAAATTCTATCAGGATGTATTCGCTGCCGAGCAGCGCGGTGCTTCCGTGGAAGAGCTGCGCGAGCTGCTCGGTCGTGGTCGTGCCAAGCAAGGTATTTTCGAAGGCGACCTGCACGAGGGCGAATTGGAGATAGGCCAGGCAGTATCGCAGATAAGTCATGCGGAGACGGTGGCCGAGATCATGGTTGATCTGGTGGATGGATACAAGCGATCATTGGCCGGGATGCCCACTGAGATA","6.00","-6.62","33074","MNRICELLGIEHPIISGGMVWCSGWKLASAVSNCGGLGLIGAGSMHPDNLEHHIRSCKAATDKPFGVNVPLLYPEMDKIMEIIMREHVPVVVTSAGSPKVWTAKLKAAGSKVIHVVSSATFARKSEAAGVDAIVAEGFEAGGHNGREETTTLCLIPEVVDAVNIPVVAAGGIASGRAVAAALALGADAVQVGTRFALSEESSAHEDFKAHCRRSVEGDTMLSLKAVSPTRLLKNKFYQDVFAAEQRGASVEELRELLGRGRAKQGIFEGDLHEGELEIGQAVSQISHAETVAEIMVDLVDGYKRSLAGMPTEI","1500200 1501138","TIGR ID: PG1416","conserved hypothetical protein","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 3-306 are 36% similar to gbAAD35882.1AE001747_25 conserved hypothetical protein of Thermotoga maritima, residues 1-299 are 34% similar to dbjBAB03929.1 unknown conserved protein of Bacillus halodurans, residues 3-306 are 35% similar to gbAAF98273.1AF197933_3 trans-2-enoyl-ACP reductase II of Streptococcus pneumoniae.This sequence is similar to BT1555.","
InterPro
IPR004136
Domain
2-nitropropane dioxygenase, NPD
PF03060\"[1-301]TNPD
InterPro
IPR013785
Domain
Aldolase-type TIM barrel
G3DSA:3.20.20.70\"[2-204]TAldolase_TIM
noIPR
unintegrated
unintegrated
SSF51412\"[2-302]TSSF51412


","BeTs to 6 clades of COG2070COG name: Dioxygenases related to 2-nitropropane dioxygenaseFunctional Class: RThe phylogenetic pattern of COG2070 is a---yqv--bR-uj-------Number of proteins in this genome belonging to this COG is 1","***** IPB001295 (Dihydroorotate dehydrogenase) with a combined E-value of 1.4e-06. IPB001295H 164-194***** IPB000262 (FMN-dependent alpha-hydroxy acid dehydrogenases) with a combined E-value of 3.6e-06. IPB000262B 110-153 IPB000262C 166-207","Residues 104-220 are 35% similar to a (OXIDOREDUCTASE PROTEIN DEHYDROGENASE BIOSYNTHESIS NAD) protein domain (PD000662) which is seen in O28109_ARCFU.Residues 4-69 are 50% similar to a (DIOXYGENASE PROTEIN 2-NITROPROPANE) protein domain (PD010873) which is seen in P71847_MYCTU.Residues 6-113 are 31% similar to a (HYPOTHETICAL 33.6 KD PROTEIN) protein domain (PD084768) which is seen in P71591_MYCTU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon Mar 5 16:08:49 MST 2001","Tue Jul 22 12:57:20 2008","Mon Mar 5 16:08:49 MST 2001","Mon Mar 5 16:08:49 MST 2001","Mon Mar 5 16:08:49 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Jul 22 12:57:20 2008","-46% similar to PDB:2GJL Crystal Structure of 2-nitropropane dioxygenase (E_value = 2.2E_33);-46% similar to PDB:2GJN crystal structure of 2-nitropropane dioxygenase complexed with FMN and substrate (E_value = 2.2E_33);","","","Residues 1 to 301 (E-value = 7.2e-84) place PG1243 in the NPD family which is described as 2-nitropropane dioxygenase (PF03060)","Thu Mar 15 14:22:56 MST 2001","34541092","","","","","","1","","","PG1416" "PG1244","1501438","1503081","1644","ATGGCAACTCCAGAATTTAAGTATCAGAAGCCTTTCCCTATGGGGGATGATACGACAGAGTATTATTTGCTGACGAAGGAGTATGTGTCCGTGGACAAGTTTGGCGATCATGATGTCCTGAAAGTGGAGCCGGAAGCTCTGCGATTACTTGCGCGGACGGCTTTTCATGACATCGCTTTCTATTTGCGACCGGAGCATCAGCAGCAAGTGGCTCGGATTCTGTCCGATCCGGAAGCCAGCGAAAACGACAAATTCGTGGCTTTGACTTTCCTGCGCAATGCGGAGGTTTCAGCCAAGGGACAGCTCCCTTTCTGCCAAGATACGGGCACGGCTATCATCCTCGGTAAGAAGGGACAGCAGGTCTGGACGGGCGGTCATGACGAAGAGCAGCTCTCGCATGGTGTCTATGATACCTATACGCAGGAGAACCTGCGCTATTCGCAGAATGCTCCTTTGGATATGTATAAGGAGGTGAATACGGGGTGCAACCTGCCCGCACAGATCGACCTGATGGCCGTGGACGGCATGGAGTACGACTTTCTCTGCATAGCCAAAGGAGGAGGGTCGGCCAATAAGACGTATCTCTATCAGGAAACGAAAGCACTGCTCAACCCCAAGACGCTGGTGAACTTCCTCGTGGATAAGATGAGTTCTCTCGGTACAGCTGCCTGTCCTCCGTATCACATTGCATTCGTGATAGGCGGAACTTCGGCCGAAACGAACCTCAAGACCGTCAAGCTGGCTTCGGCCAAGTACTACGACAATCTGCCTACTTCGGGCAACGAAGGCGGGCGTGCCTTCCGCGATGTCGAACTGGAAAAAGAAGTCTTGGAAGCTGCCTATCATCTGGGACTGGGTGCTCAGTTTGGAGGCAAATACTTCGCACACGACGTGCGCATCATCCGCCTGCCCCGACATGGAGCAAGCTGTCCCGTAGGTATGGGCGTCAGTTGTTCGGCAGACCGCAATATCAAGGCAAAGATCAATAAAGACGGTATCTGGATCGAAAAGATGGAGACCAATCCCACACGCCTCATCCCTGAATCCATGCGTGAGGGTACAGAGGGTACGGTGGTCAAGGTCGATCTGAATCGTCCGATGCCTGAGATTCTGAGAGAGCTGTCGCAGTATCCTGTTTCCACCCGTTTGTCTCTCAGTGGTACGATTATCGTGGGGCGTGATATTGCTCACGCCAAACTAAAAGAACGTATCGACCGTGGCGAGGGTTTGCCCGACTATATCAAGAATCATCCCATCTACTACGCCGGTCCGGCCAAGACACCGAAGGGGATGCCGAGCGGTTCGTTCGGGCCTACGACAGCGGGCCGTATGGATAGCTATGTGGATCTCTTCCAATCGCATGGAGGCAGTATGGTGATGATAGCCAAAGGCAACCGCTCTCAGCAAGTGACGGATGCGTGTAAGAAGTACGGCGGATTCTACCTCGGCAGTGTTGGAGGCCCAGCAGCTATTCTGGCTCAGGACAGCATTAAGAAAGTGGAGTGTCTGGAATATCCCGAGCTGGGTATGGAGGCTATTTGGAAGATCGAAGTGGAGGACTTCCCGGCCTTTATTCTGGTAGATGACAAGGGCAATGATTTCTTTACTCAGATAAGAGAGAAGTGTAAGGGTTGTGCCTTGCAT","6.30","-5.30","60558","MATPEFKYQKPFPMGDDTTEYYLLTKEYVSVDKFGDHDVLKVEPEALRLLARTAFHDIAFYLRPEHQQQVARILSDPEASENDKFVALTFLRNAEVSAKGQLPFCQDTGTAIILGKKGQQVWTGGHDEEQLSHGVYDTYTQENLRYSQNAPLDMYKEVNTGCNLPAQIDLMAVDGMEYDFLCIAKGGGSANKTYLYQETKALLNPKTLVNFLVDKMSSLGTAACPPYHIAFVIGGTSAETNLKTVKLASAKYYDNLPTSGNEGGRAFRDVELEKEVLEAAYHLGLGAQFGGKYFAHDVRIIRLPRHGASCPVGMGVSCSADRNIKAKINKDGIWIEKMETNPTRLIPESMREGTEGTVVKVDLNRPMPEILRELSQYPVSTRLSLSGTIIVGRDIAHAKLKERIDRGEGLPDYIKNHPIYYAGPAKTPKGMPSGSFGPTTAGRMDSYVDLFQSHGGSMVMIAKGNRSQQVTDACKKYGGFYLGSVGGPAAILAQDSIKKVECLEYPELGMEAIWKIEVEDFPAFILVDDKGNDFFTQIREKCKGCALH","1501438 1503081","TIGR ID: PG1417","fumarate hydratase, iron-dependent (fumarase) (fumarate hydratase Class I)","Cytoplasm","Numerous significant hits to fumarate hydratase (fumarase) in gapped BLAST; e.g. residues 1-545 are 78% similar to gb|AAC77083.1| fumarase B= fumarate hydratase Class I; anaerobicisozyme of Escherichia coli K12, residues 1-545 are 78% similar to gb|AAC74684.1| fumarase A = fumarate hydratase Class I; aerobic isozyme of Escherichia coli K12, residues 4-535 are 65% similar to emb|CAC05889.1| fumarate hydratase class I of Streptomyces coelicolor. This sequence is similar to BT2256. ","
InterPro
IPR000362
Domain
Fumarate lyase
PS00163\"[456-465]?FUMARATE_LYASES
InterPro
IPR004646
Domain
Fe-S type hydro-lyases tartrate/fumarate alpha region
PF05681\"[47-328]TFumerase
TIGR00722\"[47-328]TttdA_fumA_fumB
InterPro
IPR004647
Domain
Fe-S type hydro-lyases tartrate/fumarate beta region
PF05683\"[332-541]TFumerase_C
TIGR00723\"[372-537]TttdB_fumA_fumB
InterPro
IPR011167
Family
Iron-dependent fumarate hydratase
PIRSF001394\"[3-547]TFe_dep_fumar_hy
noIPR
unintegrated
unintegrated
G3DSA:3.20.130.10\"[347-537]TG3DSA:3.20.130.10


","BeTs to 3 clades of COG1951COG name: Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domainFunctional Class: CThe phylogenetic pattern of COG1951 is amTk-qv-E------------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 369-502 are 82% similar to a (FUMARATE HYDRATASE CLASS I) protein domain (PD006724) which is seen in FUMA_ECOLI.Residues 323-367 are 66% similar to a (FUMARATE HYDRATASE CLASS I) protein domain (PD039700) which is seen in FUMB_ECOLI.Residues 6-60 are 65% similar to a (FUMARATE HYDRATASE CLASS I) protein domain (PD039701) which is seen in FUMB_ECOLI.Residues 62-322 are 82% similar to a (FUMARATE HYDRATASE FUMARASE CLASS) protein domain (PD006980) which is seen in FUMA_ECOLI.Residues 503-545 are 81% similar to a (FUMARATE HYDRATASE CLASS I FUMARASE LYASE TRICARBOXYLIC) protein domain (PD032479) which is seen in FUMA_ECOLI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon Mar 5 16:33:10 MST 2001","Wed Dec 10 17:09:02 2003","Mon Mar 5 16:33:10 MST 2001","","Mon Mar 5 16:33:10 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Mar 5 16:33:10 MST 2001","-51% similar to PDB:2ISB Crystal structure of Fumarase of FUM-1 (NP_069927.1) from Archaeoglobus Fulgidus at 1.66 A resolution (E_value = 8.5E_16);-45% similar to PDB:1QGI CHITOSANASE FROM BACILLUS CIRCULANS (E_value = 8.5E_16);-45% similar to PDB:2D05 Chitosanase From Bacillus circulans mutant K218P (E_value = 8.5E_16);-49% similar to PDB:1JXM CRYSTAL STRUCTURE OF THE GMP BOUND SH3-HOOK-GK FRAGMENT OF PSD-95 (E_value = 8.5E_16);-49% similar to PDB:1JXO Crystal Structure of the SH3-HOOK-GK Fragment of PSD-95 (E_value = 8.5E_16);","","","Residues 47 to 328 (E-value = 1e-130) place PG1244 in the Fumerase family which is described as Fumarate hydratase (Fumerase) (PF05681)Residues 332 to 541 (E-value = 8.3e-110) place PG1244 in the Fumerase_C family which is described as Fumarase C-terminus (PF05683)","Wed Dec 10 17:09:02 2003","34541093","","","Bell,P.J., Andrews,S.C., Sivak,M.N. and Guest,J.R. 1989. Nucleotide sequence of the FNR-regulated fumarase gene (fumB) of Escherichia coli K-12. J. Bacteriol. 171 (6): 3494-3503. PubMed: 2656658.Miles,J.S. and Guest,J.R. 1984. Complete nucleotide sequence of the fumarase gene fumA, of Escherichia coli. Nucleic Acids Res. 12 (8): 3631-3642. PubMed: 6328431.","","Mon Mar 5 16:33:10 MST 2001","1","","","PG1417" "PG1245","1503207","1505012","1806","ATGGAAACGAAATACATCGTATCTGCACTCAAATATCGCCCCGATTCTTTTGCCTCGATGGTCGGTCAGGAGGCATTGTCCGCTACACTCAAAAGCTCCATCGTACAGCAAAAGACAGCTCACGCCTATCTCTTTTGTGGCCCGCGTGGGGTGGGAAAGACCTCTTGTGCACGCATCTTCGCCCGTGCCATCAACTGTCTGGAGCGGTTGCCGGATGGAGAAGCTTGTGGGCGATGCGAGTCGTGCAAGGCTTTCGATGAGCAGCGATCCATGAATATATATGAACTGGATGCCGCTTCGAACAATTCGGTAGATGATATTCGTCTCTTGATAGAGCAGGCCAATGTGCCGCCACAGATCGGAAAATACAAGATCTACATCATCGACGAGGTACACATGCTCTCGCAGCAAGCCTTCAATGCTTTCCTGAAGACTCTCGAAGAACCGCCTTCTTATGTGATCTTTATATTGGCTACCACAGAGAAGCACAAGATCCTGCCCACTATTCTCTCGCGCTGTCAGATATTCGACTTCAAACGAATACCACCGGCCCGAATAGAGCAACATTTGCGCTACGTAGCAGACAGCGAGGGGATAAAAGCCGAAGCCGAAGCTTTGGCTATAATAGCGACAAAAGCCGATGGAGGGATGCGCGATGCTCTTTCGCTCTTCGACCGCATTGCCCGTTTTTCGGAAGGCAATATTACCTATGCCAATACGATAGAGAATCTGAATATCCTCGACTACGATTATTATTTCCGTCTGACGGATTTCTTTTTACAGGGGGATTACCGATCCGTATTGATCGTGTTGGACGAATTGCTTGCCAAGGGATTCGACGGACAGGTGATCGTGAGCGGATTGGCTTCTTTCTTCCGCGATTTGATGATGGCTCAGGACGCTTCTACCTTGCCGCTGTTGGAGCAGTCCGAAGTAGTCATACAGCGATATGTGGATATGGCAGCACGTTGCCCGACTTCTTTCTTATACCAATCGCTCAAGATACTGAATGCCTGTGACCAGCAGTATCGCCAGAGCAATGGCAAGCGTCTGTTGTTGGAGTTGTCGCTGATGAATATCGCGGCTTTATTTAGCAAGGGACTGACTGCTCCGCCTCCGACCCATGGAGCACAGCACGCAAATCCCGTGGTGAGCGGATCGGTATCTCCCCGGCCGGCTCCGGCCAAAGAGCAGCCATCCGTTGCTCCATCACAGTCCTCTGTCCCACCTCAGCCGAGTATCGGGGAGCAGCGACGCCAACCCGAGACCACTGCTCCAACTATCACGGAAGACAAGCCCGAACAGACGAAAGTGGTACCTCCGACGCGCCCGATGGCAACATCTACTGTCGGATCGGAAGGCCGGTTTACATTAAGGGGAATCCGCAATAAGCAGGAACAACTCCAAAATAACATTCAGGAGGTTCGGACAGAGATGACCGAATCATTCGATGAGGAGCAGTTGCAACTGGCTTGGATCGAATTTGCCGAAACGAAGCTCTCGGAGGAGATTCACCTGAAAGAAACGATGGCTAACTGTCTTCCTAAACTCCGTCCCGGAACTTCGGCTTTTGAAGTGGAGGTGCTCAATAGCAGGCAAGAGGAAGAAATCAATAACGTATCGGCTCGTTTGCTGAGCTTCCTTGCCGATAAGCTGTGCAATACGACCATACGAATGAATGTGCGAGTATCCGAATCTACATCTCTGAACCGAGTGCCTGTCTCTTTGGACGAAAAGATCGAACGCCTCAATCAGGAAAATCCTCTTTTTGATGAGCTTAGAATGCGTCTTGGTCTTAGTCTGGTA","5.50","-8.77","67409","METKYIVSALKYRPDSFASMVGQEALSATLKSSIVQQKTAHAYLFCGPRGVGKTSCARIFARAINCLERLPDGEACGRCESCKAFDEQRSMNIYELDAASNNSVDDIRLLIEQANVPPQIGKYKIYIIDEVHMLSQQAFNAFLKTLEEPPSYVIFILATTEKHKILPTILSRCQIFDFKRIPPARIEQHLRYVADSEGIKAEAEALAIIATKADGGMRDALSLFDRIARFSEGNITYANTIENLNILDYDYYFRLTDFFLQGDYRSVLIVLDELLAKGFDGQVIVSGLASFFRDLMMAQDASTLPLLEQSEVVIQRYVDMAARCPTSFLYQSLKILNACDQQYRQSNGKRLLLELSLMNIAALFSKGLTAPPPTHGAQHANPVVSGSVSPRPAPAKEQPSVAPSQSSVPPQPSIGEQRRQPETTAPTITEDKPEQTKVVPPTRPMATSTVGSEGRFTLRGIRNKQEQLQNNIQEVRTEMTESFDEEQLQLAWIEFAETKLSEEIHLKETMANCLPKLRPGTSAFEVEVLNSRQEEEINNVSARLLSFLADKLCNTTIRMNVRVSESTSLNRVPVSLDEKIERLNQENPLFDELRMRLGLSLV","1503123 1505012","For other pol III sequences, see PG0031, PG1614, PG1615, PG0831.Using gapped BLAST, approximately the last 100 amino acids of this protein have no significant similarity to any other protein.TIGR ID: PG1418","DNA polymerase III subunit gamma/tau","Cytoplasm, Periplasm","Several hits in gapped BLAST to pol III gamma/tau subunit sequences, e.g. residues 12-381 are 40% similar to the gamma/tau subunit sequence from B. halodurans (AP001507). Residues 5-440 are 33% similar to (AE006072) DnaX of Pasteurella multocida. Residues 3-505 are 30% similar to (AE001306) DNA Pol III Gamma and Tau of Chlamydia trachomatis.This sequence is similar to CT334 and BT1610.","
InterPro
IPR001270
Family
Chaperonin clpA/B
PR00300\"[43-61]T\"[127-145]TCLPPROTEASEA
InterPro
IPR003593
Domain
AAA+ ATPase, core
SM00382\"[39-182]TAAA
InterPro
IPR003959
Domain
AAA ATPase, core
PF00004\"[42-187]TAAA
InterPro
IPR008921
Domain
DNA polymerase III clamp loader subunit, C-terminal
SSF48019\"[246-372]TPol_clamp_load_C
InterPro
IPR012763
Domain
DNA polymerase III, subunits gamma and tau
TIGR02397\"[5-361]TdnaX_nterm
noIPR
unintegrated
unintegrated
G3DSA:1.10.8.60\"[182-244]TG3DSA:1.10.8.60
G3DSA:1.20.272.10\"[245-377]TG3DSA:1.20.272.10
G3DSA:3.40.50.300\"[5-180]TG3DSA:3.40.50.300
PTHR11669\"[100-543]TPTHR11669
SSF52540\"[17-226]TSSF52540


","BeTs to 17 clades of COG0470COG name: ATPase involved in DNA replicationFunctional Class: LThe phylogenetic pattern of COG0470 is AMTKYQVCEBRHUJGPOLINXNumber of proteins in this genome belonging to this COG is 2","***** IPB001939 (AAA-protein (ATPases associated with various cellular activities)) with a combined E-value of 4.2e-10. IPB001939B 40-61 IPB001939C 105-138 IPB001939D 139-185","Residues 76-161 are 36% similar to a (PUTATIVE DNA POLYMERASE III) protein domain (PD098254) which is seen in O64728_ARATH.Residues 163-297 are 31% similar to a (PROTEIN SUBUNIT REPLICATION DNA ATP-BINDING FACTOR C) protein domain (PD001148) which is seen in DP3X_BACSU.Residues 104-179 are 46% similar to a (DNA III PROTEIN POLYMERASE) protein domain (PD035127) which is seen in O67486_AQUAE.Residues 11-64 are 57% similar to a (PROTEIN DNA ATP-BINDING SUBUNIT REPLICATION FACTOR C) protein domain (PD000893) which is seen in P73507_SYNY3.Residues 76-130 are 50% similar to a (DNA III POLYMERASE TAU) protein domain (PD004595) which is seen in O51417_BORBU.Residues 92-181 are 36% similar to a (PROTEIN ORF PUTATIVE KINASE) protein domain (PD000146) which is seen in O51706_BORBU.Residues 17-161 are 55% similar to a (PROTEIN ATP-BINDING PROTEASE SUBUNIT REGULATORY HOMOLOG) protein domain (PD000092) which is seen in DP3X_BACSU.","","Thu Jun 14 11:43:03 MDT 2001","","Thu Jun 14 11:43:03 MDT 2001","Thu Jun 14 11:43:03 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:43:03 MDT 2001","Thu Jun 14 11:43:03 MDT 2001","","Mon Jun 25 13:44:04 MDT 2001","Tue Dec 19 14:50:20 MST 2000","Mon Dec 8 14:38:54 2003","Tue Dec 19 14:43:38 MST 2000","Mon Jun 25 13:44:04 MDT 2001","Mon Jun 25 13:44:04 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1245 is similar to PG0831, a predicted gamma/tau subunit sequence, and to PG0982, an ATPase. Residues 8-363 are 23% similar to PG0831. Residues 4-228 are 27% similar to PG0982.","Mon Jun 25 13:44:04 MDT 2001","Thu Apr 19 16:49:54 MDT 2001","-53% similar to PDB:1JR3 Crystal Structure of the Processivity Clamp Loader Gamma Complex of E. coli DNA Polymerase III (E_value = 1.3E_52);-53% similar to PDB:1XXH ATPgS Bound E. Coli Clamp Loader Complex (E_value = 1.3E_52);-53% similar to PDB:1XXI ADP Bound E. coli Clamp Loader Complex (E_value = 1.3E_52);-60% similar to PDB:1NJF Nucleotide bound form of an isolated E. coli clamp loader gamma subunit (E_value = 4.7E_47);-60% similar to PDB:1NJG Nucleotide-free form of an Isolated E. coli Clamp Loader Gamma Subunit (E_value = 4.7E_47);","","","Residues 42 to 233 (E-value = 4.8e-07) place PG1245 in the AAA family which is described as ATPase family associated with various cellular activities (AAA) (PF00004)","Mon Jun 25 13:44:04 MDT 2001","34541094","","","","","","1","","","PG1418" "PG1246","1505140","1505532","393","TTGACAGTTGGCGGGATGCAACCAGTATCCATTATGGGCAAACATTTAAACAACTTTGAACGCCTTAGCATCCTTGAGGATTACCTCTCGGGGTCAGATAGCAAAGTAGCCATTGAGCAGAAATATGGTCTAAGTCATGGTCTCATTCGCTCTTGGCTTCGTAAATTTGGACTCGAAGATAAAGTTCATCCAGTCCCAATGAAAGTGTCCCAATCCCCCCAGAGTGAGCTACCCCTGAACGAAAAAGAAGAATTAGAGCAGCTACGTAAAGAAAATCGTGTCCTCAAGAGTCGTCTCAAGCGAGAAGAACTAGGGCATCAAGCCTACAAGCTACTTGTAGAGTTGGCAGAAGAAACCTACGGCATTCAGATACGAAAAAACTCCGAAGCCAAG","9.60","2.96","15024","LTVGGMQPVSIMGKHLNNFERLSILEDYLSGSDSKVAIEQKYGLSHGLIRSWLRKFGLEDKVHPVPMKVSQSPQSELPLNEKEELEQLRKENRVLKSRLKREELGHQAYKLLVELAEETYGIQIRKNSEAK","1505140 1505532","See PG1247 for associated transposase.Member of the IS3 family of insertion elements.TIGR ID: PG1419","ISPg5-related orf-1","Cytoplasm","PG1246 is equivalent to the previously reported gb|AAF69127.1 in GenBANK.Otherwise, no hits in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Fri Feb 9 17:33:28 MST 2001","Fri Feb 9 17:33:28 MST 2001","Fri Feb 9 17:33:28 MST 2001","Tue Dec 19 15:45:14 MST 2000","","","yes","Fri Feb 20 15:41:32 MST 1998","PG1246 is 86-100% similar to (in order of increasing similarity) PG0419, PG0392, PG0008, PG0033, PG1437, PG1490, PG1797, PG1862, PG0532, and PG0840, all ORFs associated with ISPg5-related transposases. ","Mon Jun 4 13:31:13 MDT 2001","Mon Jun 4 13:31:13 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jun 4 13:31:13 MDT 2001","34541095","","Califano,J.V., Kitten,T., Lewis,J.P., Macrina,F.L.,Fleischmann,R.D., Fraser,C.M., Duncan,M.J. and Dewhirst,F.E.Characterization of Porphyromonas gingivalis insertionsequence-like element ISPg5.Infect. Immun. 68 (9), 5247-5253 (2000)20407340","","Fri Feb 9 17:33:28 MST 2001","","1","","","PG1419" "PG1247","1505589","1506524","936","CTGCTTGGCTTTAGCCGTCAGGCCTTTTATAAACGTCATCTCAACGATTTAGCTAGGCACGAGGAGGATGTCCTATGCAGTAGTATCATCCAATATTGTTGGCACTTAAGACAAGCAGAGCACCTACCTCAAGCTGGCTTCCGAGAGCTCATGGTGCTTTGTCAGCAATACTTCGGCCCCAAGTTCACGCTTGGGCGCGATCGCTTTTGCGCCCTACTCAGACGCCATGGTATGATGCTGCGCAAACGGTCTGTGCGCCCTCAGACAACCAACTCTCGGCATAGGCTCTACAAGTATGAAGACCTGCTCAATACAGAGCCTAAGTTTGTGCCTCAAAGACCTGGGGAACTCCTTGTAGCAGACATCACCTACGTGGCTTACCAAGATGGGTTTGCCTATCTCTCCCTACTGACCGATGCCTATAGTCGCTGTATCGTAGGGTATTGCTTACATCCTACCCTAGAGGTTGAAGGCTGTTTGAATGCTCTACATCAAGCCTTTGCTTTCTACGATCAGCATCAAATTGATACGAGCAATATGATTCATCATAGCGACCGAGGCATTCAGTATGCCAGTAAGAGCTACACCGATCTGTTGCATGGGCGAGGCTGTCGCATCAGCATGACTCAGACGGGAGATCCTCTGCATAATGCATTGGCTGAGCGGATGAACAATACGCTCAAGAACTCGTGGCACATCTCCTCTTCGAAGCAGTCTTTTGATCAAGCACTCCTTTCTGTAGACCGAGCCGTGCGCATGTACAACGAGGCGCGTCCACATCAAGCTCTAGGGGCGAAAACGCCTATGCAAGTCATTGCGCCAGAGTCTAAAAATCCGTTACTAACGAGGAGGGAGCATGGGCCAGAGATTGCCCCCGAGCTATACCGAAGGATGAATGTCAGACAAAGAGCTAACTTTGCTCGTGTCAACCGAAAT","10.00","15.47","36207","LLGFSRQAFYKRHLNDLARHEEDVLCSSIIQYCWHLRQAEHLPQAGFRELMVLCQQYFGPKFTLGRDRFCALLRRHGMMLRKRSVRPQTTNSRHRLYKYEDLLNTEPKFVPQRPGELLVADITYVAYQDGFAYLSLLTDAYSRCIVGYCLHPTLEVEGCLNALHQAFAFYDQHQIDTSNMIHHSDRGIQYASKSYTDLLHGRGCRISMTQTGDPLHNALAERMNNTLKNSWHISSSKQSFDQALLSVDRAVRMYNEARPHQALGAKTPMQVIAPESKNPLLTRREHGPEIAPELYRRMNVRQRANFARVNRN","1505739 1506524","One of eleven ISPg5 elements in the genome (see Paralogs). Califano et al. report considerable strain diversity of these (Infect. Immun. 68 (9), 5247-5253 (2000)).Member of the IS3 family of insertion elements. See PG1246 for associated ORF.TIGR ID: PG1420","ISPg5 transposase","Cytoplasm","PG1247 is equivalent to the entire length of the protein previously reported gb|AAF69128.1| in GenBANK.Numerous significant hits in gapped BLAST to transposase proteins; e.g. residues 91-213 are 56% similar to transposase homolog (U67062) of Bacteriodes thetaiotaomicrom, residues 64-287 are 32% similar to InsB (AF153317) of Shigella dysenteriae, residues 64-268 are 33% similar to Hp1 (AF081284) of E.coli.","
InterPro
IPR001584
Domain
Integrase, catalytic core
PF00665\"[110-273]Trve
PS50994\"[110-276]TINTEGRASE
noIPR
unintegrated
unintegrated
G3DSA:3.30.420.10\"[113-281]Tno description


","No hit to the COGs database.","***** PF01836 (Transposase) with a combined E-value of 4.3e-23. PF01836B 103-154 PF01836C 181-190 PF01836D 215-222 PF01836E 253-272","No significant hit to the ProDom database.","","Thu Jun 14 11:43:38 MDT 2001","","Thu Jun 14 11:43:38 MDT 2001","Thu Jun 14 11:43:38 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:43:38 MDT 2001","Thu Jun 14 11:43:38 MDT 2001","","Mon Jun 25 13:50:18 MDT 2001","Fri Feb 9 16:44:47 MST 2001","Mon Jun 25 13:50:18 MDT 2001","Thu Nov 16 10:45:13 MST 2000","Mon Jun 25 13:50:18 MDT 2001","","yes","Fri Feb 20 15:41:32 MST 1998","PG1247 is essentially identical to PG0841, PG1796, PG0533, and PG0034, all ISPg5 transposases. PG1247 is paralogous to PG1861, PG1491, PG0391, PG0418, PG1436, PG0007 and PG0841, all ISPg5 transposases.","Mon Jun 4 13:36:00 MDT 2001","Mon Jun 4 13:36:00 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 110 to 273 (E-value = 5.7e-32) place PG1247 in the rve family which is described as Integrase core domain (PF00665)","Mon Jun 25 13:50:18 MDT 2001","34541096","","Califano,J.V., Kitten,T., Lewis,J.P., Macrina,F.L., Fleischmann,R.D., Fraser,C.M.,Duncan,M.J. and Dewhirst,F.E. Characterization of Porphyromonas gingivalis insertionsequence-like element ISPg5.Infect. Immun. 68 (9), 5247-5253 (2000)","","Thu Nov 16 10:45:13 MST 2000","","1","","","PG1420" "PG1247.1","1507137","1506970","168","ATGGCTTACGTTATTAATGACAGTTGTGTAGCATGCGGATCATGCATCGATGAATGTCCGGTATCAGCTATCTCTGAAGGTAGCATCTATAAAATCGATGCTGATACATGTATTGATTGTGGCACTTGTGCTGCAGCATGCCCTTCTGAAGCTATCCATCCTGCCGAA","0.00","0.00","5671","MAYVINDSCVACGSCIDECPVSAISEGSIYKIDADTCIDCGTCAAACPSEAIHPAE","","TIGR ID: PG1421","ferredoxin","Periplasm, Cytoplasm","Numerous weak hits using gapped BLAST to iron-sulphur cluster binding proteins and ferredoxins, including residues 1-52 are 44% similar to gi|11498235|ref|NP_069461.1 iron-sulfur cluster binding protein in Archaeoglobus fulgidus, residues 3-54 are 48% similar to gi|4980519|gb|AAD35128.1|AE001691_2 (AE001691) iron-sulfur cluster-binding protein in Thermotoga maritima and residues 2-56 are 67% similar gi|7546410|pdb|1DUR|A Chain A, Replacement For 1fdx 2(4fe4s) ferredoxin.","
InterPro
IPR000813
Family
7Fe ferredoxin
PR00354\"[17-27]T\"[32-49]T7FE8SFRDOXIN
InterPro
IPR001450
Domain
4Fe-4S ferredoxin, iron-sulfur binding
PR00353\"[30-41]T\"[42-53]T4FE4SFRDOXIN
PF00037\"[2-25]T\"[30-53]TFer4
PS00198\"[9-20]T\"[37-48]T4FE4S_FERREDOXIN
noIPR
unintegrated
unintegrated
G3DSA:3.30.70.20\"[2-55]TG3DSA:3.30.70.20
SSF54862\"[1-56]TSSF54862


","BeTs to 6 clades of COG1145COG name: Ferredoxin 2Functional Class: CThe phylogenetic pattern of COG0593 is AMTK--VCEb-Huj-------Number of proteins in this genome belonging to this COG is 2","","","Mon Jul 9 15:08:16 MDT 2001","Mon Jul 9 15:08:16 MDT 2001","Mon Jul 9 15:08:16 MDT 2001","Mon Jul 9 15:08:16 MDT 2001","Mon Jul 9 15:08:26 MDT 2001","Mon Jul 9 15:08:16 MDT 2001","Mon Jul 9 15:08:16 MDT 2001","Mon Jul 9 15:08:26 MDT 2001","Mon Jul 9 15:08:26 MDT 2001","Mon Jul 9 15:08:16 MDT 2001","Mon Jul 9 15:08:16 MDT 2001","Mon Jul 9 15:39:00 MDT 2001","Mon Jul 9 15:39:00 MDT 2001","Mon Jul 9 15:18:38 MDT 2001","Mon Jul 9 15:08:16 MDT 2001","Mon Jul 9 15:08:16 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 6-53 are 34% similar to PG0276, a predicted polyferredoxin.","Mon Jul 9 15:14:52 MDT 2001","Mon Jul 9 15:08:16 MDT 2001","-82% similar to PDB:1DUR REPLACEMENT FOR 1FDX 2(4FE4S) FERREDOXIN FROM (NOW) PEPTOSTREPTOCOCCUS ASACCHAROLYTICUS (E_value = 5.3E_19);-80% similar to PDB:1FCA STRUCTURE OF THE FERREDOXIN FROM CLOSTRIDIUM ACIDURICI: MODEL AT 1.8 ANGSTROMS RESOLUTION (E_value = 5.5E_16);-81% similar to PDB:1CLF CLOSTRIDIUM PASTEURIANUM FERREDOXIN (E_value = 2.1E_15);-78% similar to PDB:1FDN REFINED CRYSTAL STRUCTURE OF THE 2[4FE-4S] FERREDOXIN FROM CLOSTRIDIUM ACIDURICI AT 1.84 ANGSTROMS RESOLUTION (E_value = 2.1E_15);-78% similar to PDB:2FDN 2[4FE-4S] FERREDOXIN FROM CLOSTRIDIUM ACIDI-URICI (E_value = 2.1E_15);","","","Residues 2 to 25 (E-value = 1e-06) place PG1247.1 in the Fer4 family which is described as 4Fe-4S binding domain (PF00037)Residues 30 to 53 (E-value = 9.2e-08) place PG1247.1 in the Fer4 family which is described as 4Fe-4S binding domain (PF00037)","Mon Jul 9 15:08:16 MDT 2001","34541097","","","Backes,G., Mino,Y., Loehr,T.M., Meyer,T.E., Cusanovich,M. Sweeney,W.V., Adman,E.T. and Sanders-Loehr,J., the Environment of Fe4s4 Clusters in Ferredoxins and High-Potential Iron Proteins. New Information from X-Ray Crystallography and Resonance Raman Spectroscopy, J.Am.Chem.Soc. 113, 2055 (1991).","","Mon Jul 9 15:39:00 MDT 2001","1","Mon Jul 9 15:08:16 MDT 2001","","PG1421" "PG1248","1509005","1507476","1530","ATGCTCAAAACATTCCAAATGAAATCAGAAATGAAATCACAAAGGAGAACTCTAACGACCGATTGGGGTTTAAGACAATATCTTCTATTTCTTCTCTTTGCAATTCTCGGGCAGAGCCTTTCTGCACAAGATCGGGGTGCAATAGATATCATCAAGAAAGCTGAGAGACAGACGAAAAGTCGTATCGGCGTGGAGATACGTCGCTGTCGGGACGATAGCCTTTTCGTATCAAATCGAAGAGACGAACAGTTTTGTCCGGCATCTCTGGTTAAGCTCGTAACCTCTGCTTCCATTTTGCGTCTGAGGGGAACCGAGATACCATTCTATACCGGAGTCGGCATGGATGGAAAAATTCGAAAAGGGATTCTTGACGGTAATCTCATCATCAAAGGAGGAGGAGATCCTTCTCTCGCATCCAACTATTTACCGACGGACTCCGGTCGATTTGCCTATGCTTTGGTCGATGCCGTCAAGCAATGGGGCATAAAAGAAATAACAGGAGATATCATCGTCGATGCATCAGCTTTTGACATTGAGGGAGTCAATGACAGTTGGCTCGATGAAGACAAAGGCAACTATTTCGGTGCCGGCGTCTATGGATTTAACATCAATGATAATAGAATAGATGTCATCCTTGCTACAGGCAAAGCAGGCTCCGAAGCTCATATCCTGAGAATAGAGCCTCCTCATCCGGAGGTTCGGTGGGAAAACAGAATCGAGGTAATCCACCGAGGAAAGGATACTGCCGGATGCTATGGCGAAGGGTTGGATCTTAAGCGAACCCTTACGGGAGTCCTTCCGACAAATATCGTTTCCTACCGCCTCAAGACGGATTTGCCCGATCCTGCTCTATACGGAGCTGCATGGGCCAAAGGCTTATTGTCTGCTGCCGGCACTCTGTGCCAAGGGAAGTGCCGTGCCTCATATCAAGCCGTACCGATCACTCAAGAATTATTAATCTACGAATCCCTTCCATTGGATTCATTGGTGCGGGTGATGAATTTCCGTAGTCTGAATCATTTTGCAGAGGCTTTTGTCAAACAGTTGGCTCCCCTTGCATCGAAGAATCATCGGGGTAATACAACAGAGCGTGGTCTGTCCGTCATCCGAAACTATTGGACTTCCCAAACAGGATTGCAGCATACCGACATTTCTCTTTCGGATGGATCCGGTCTTTCCCGTAAAAATCGCTTTAGCCCGAATGCCCTCAGCCAAATACTGATCGATATGATCAGTCGCGGCGATCTTGTTACCACTTCGTTCTTGAATAGCCTGCCTCTCGCAGGAAGAGAGGGTACGGTGAAGAACTTCATGAAAGACGAAGCAATAGAGGCATACCTCAAGAGTGGTAGTATGAAAGGTGTTTTAGGGTATGCCGGCTATGTGCGATTCCAAGGAGAATGGTACAGCGTTGTATTGATGGGTAATGATTTTTCTTCTTCCGCACCGGTTCGTCGTGCTTTCTCGGATTTTCTTCTCTCTTTCTTCTCTTCCGCTATCTCTACTAAGCAAGTCCTGCTAAAGGAAAAG","9.80","11.24","56390","MLKTFQMKSEMKSQRRTLTTDWGLRQYLLFLLFAILGQSLSAQDRGAIDIIKKAERQTKSRIGVEIRRCRDDSLFVSNRRDEQFCPASLVKLVTSASILRLRGTEIPFYTGVGMDGKIRKGILDGNLIIKGGGDPSLASNYLPTDSGRFAYALVDAVKQWGIKEITGDIIVDASAFDIEGVNDSWLDEDKGNYFGAGVYGFNINDNRIDVILATGKAGSEAHILRIEPPHPEVRWENRIEVIHRGKDTAGCYGEGLDLKRTLTGVLPTNIVSYRLKTDLPDPALYGAAWAKGLLSAAGTLCQGKCRASYQAVPITQELLIYESLPLDSLVRVMNFRSLNHFAEAFVKQLAPLASKNHRGNTTERGLSVIRNYWTSQTGLQHTDISLSDGSGLSRKNRFSPNALSQILIDMISRGDLVTTSFLNSLPLAGREGTVKNFMKDEAIEAYLKSGSMKGVLGYAGYVRFQGEWYSVVLMGNDFSSSAPVRRAFSDFLLSFFSSAISTKQVLLKEK","1509005 1507476","TIGR ID: PG1422","penicillin-binding protein 4 (D-alanyl-D-alanine carboxypeptidase)","Outer membrane, Periplasm, Cytoplasm","Numerous significant hits to penicillin-binding proteins in gapped BLAST; e.g. residues 86-463 are 26% similar to gb|AAG06435.1|AE004729_9 probable D-alanyl-D-alanine carboxypeptidase of Pseudomonas aeruginosa, residues 86-462 are 25% similar to gb|AAC76214.1| D-alanyl-D-alanine carboxypeptidase, fraction B; penicillin-binding protein 4 of Escherichia coli K12, residues 63-461 are 26% similar to emb|CAB13718.1| penicillin-binding protein of Bacillus subtilis.","
InterPro
IPR000667
Family
Peptidase S13, D-Ala-D-Ala carboxypeptidase C
PR00922\"[84-103]T\"[317-339]T\"[378-392]T\"[393-407]TDADACBPTASE3
PF02113\"[86-476]TPeptidase_S13
TIGR00666\"[72-477]TPBP4
InterPro
IPR012338
Domain
Penicillin-binding protein, transpeptidase fold
SSF56601\"[46-496]TPBP_transp_fold


","BeTs to 3 clades of COG2027COG name: D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4)Functional Class: MThe phylogenetic pattern of COG2027 is -------Cebrh---------Number of proteins in this genome belonging to this COG is 1","***** PR00922 (D-Ala-D-Ala carboxypeptidase 3 (S13) family signature) with a combined E-value of 1.8e-12. PR00922A 84-103 PR00922B 317-339 PR00922C 378-392 PR00922D 393-407","Residues 63-198 are 31% similar to a (PROTEIN CARBOXYPEPTIDASE PRECURSOR DD-) protein domain (PD011380) which is seen in PBP_BACSU.Residues 318-462 are 32% similar to a (PROTEIN CARBOXYPEPTIDASE PRECURSOR DD-) protein domain (PD006912) which is seen in Q55728_SYNY3.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon Mar 5 17:10:20 MST 2001","Mon Mar 5 17:10:20 MST 2001","Mon Mar 5 17:10:20 MST 2001","Mon Mar 5 17:10:20 MST 2001","Mon Mar 5 17:10:20 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Mar 5 17:10:20 MST 2001","-46% similar to PDB:1W5D CRYSTAL STRUCTURE OF PBP4A FROM BACILLUS SUBTILIS (E_value = 3.4E_27);-45% similar to PDB:2EX2 Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli (E_value = 1.2E_24);-45% similar to PDB:2EX6 Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli, complexed with ampicillin (E_value = 1.2E_24);-45% similar to PDB:2EX8 Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli, complexed with penicillin-G (E_value = 1.2E_24);-45% similar to PDB:2EX9 Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli, complexed with penicillin-V (E_value = 1.2E_24);","","","Residues 86 to 476 (E-value = 1e-19) place PG1248 in the Peptidase_S13 family which is described as D-Ala-D-Ala carboxypeptidase 3 (S13) family (PF02113)","Thu Mar 15 14:32:23 MST 2001","34541098","","","Korat,B., Mottl,H. and Keck,W. 1991. Penicillin-binding protein 4 of Escherichia coli: molecular cloning of the dacB gene, controlled overexpression, and alterations in murein composition. Mol. Microbiol. 5 (3): 675-684. PubMed: 2046551.Tognoni,A., Franchi,E., Magistrelli,C., Colombo,E., Cosmina,P. and Grandi,G. 1995. A putative new peptide synthase operon in Bacillus subtilis: partial characterization. Microbiology 141 (Pt 3): 645-648. PubMed: 7711903.","","Thu Mar 15 14:35:14 MST 2001","1","","","PG1422" "PG1249","1510900","1509233","1668","ATGAAAAAGCTTTTACAGGCTAAAGCCTTGATTCTGGCATTGGGACTCTTCCAACTGCCCGCAATCGCCCAAACGCAAATGCAAGCAGACCGAACAAACGGTCAATTTGCAACAGAAGAGATGCAACGAGCATTCCAGGAAACGAATCCCCCTGCAGGTCCTGTGCGTGCTATCGCTGAGTACGAACGCTCTGCAGCCGTTTTGGTACGCTACCCGTTCGGTATCCCGATGGAATTGATCAAAGAGCTGGCCAAGAACGACAAGGTGATTACCATTGTGGCGAGTGAAAGCCAAAAAAACACCGTTATAACCCAGTACACCCAAAGCGGTGTGAATCTCTCTAATTGCGATTTCATCATTGCGAAAACTGACTCTTACTGGACACGCGACTATACCGGTTGGTTCGCAATGTACGATACGAACAAAGTAGGTCTCGTGGACTTTATTTATAACCGCCCTCGTCCTAACGATGATGAATTCCCCAAATACGAAGCACAATATCTGGGCATCGAGATGTTCGGGATGAAGCTCAAGCAGACCGGTGGCAACTACATGACGGACGGATATGGATCCGCTGTGCAGTCACATATCGCATATACGGAGAACTCCTCTCTGTCTCAAGCTCAAGTAAATCAAAAGATGAAAGACTATCTCGGCATCACACATCATGATGTGGTACAAGATCCGAACGGCGAATATATCAACCATGTGGACTGTTGGGGCAAGTATTTGGCACCGAACAAAATCCTCATCAGGAAAGTGCCTGACAATCACCCTCAGCACCAAGCCCTGGAAGATATGGCAGCCTACTTCGCAGCACAGACCTGCGCATGGGGAACGAAGTACGAGGTATATCGCGCTTTGGCCACCAATGAACAACCGTACACGAACTCTCTGATTCTGAACAACAGGGTATTTGTTCCTGTCAATGGCCCCGCCTCCGTGGACAACGATGCTCTGAACGTCTATAAGACGGCAATGCCCGGTTACGAAATTATAGGTGTCAAAGGGGCTTCAGGAACACCTTGGTTAGGAACAGATGCCCTGCATTGTCGTACTCACGAGGTAGCGGATAAGGGCTATCTCTATATCAAGCACTACCCGATACTGGGCGAACAGGCAGGCCCTGATTATAAGATCGAAGCAGATGTCGTCTCATGCGCCAATGCTACTATCTCGCCGGTACAATGTTACTATCGTATCAATGGTTCCGGTAGCTTTAAGGCTGCTGATATGACGATGGAATCAACAGGTCACTATACTTATAGCTTTACAGGTCTTAACAAGAATGATAAGGTAGAATACTATATCTCTGCCGCTGACAATAGTGGTCGCAAAGAGACTTATCCCTTTATCGGCGAACCTGATCCTTTCAAGTTTACGTGTATGAACGAAACCAATACATGTACTGTGACCGGAGCTGCCAAAGCTCTTCGTGCATGGTTCAACGCCGGTCGTTCAGAACTGGCTGTTTCGGTAAGTTTGAATATTGCCGGCACATATCGGATAAAGCTTTATAACACCGCAGGAGAAGAAGTCGCTGCAATGACCAAGGAATTAGTAGCAGGGACGAGTGTCTTCAGTATGGATGTGTATTCTCAGGCTCCGGGCACATATGTTCTGGTTGTTGAAGGAAATGGAATCCGTGAGACAATGAAAATTCTCAAA","6.20","-4.94","61721","MKKLLQAKALILALGLFQLPAIAQTQMQADRTNGQFATEEMQRAFQETNPPAGPVRAIAEYERSAAVLVRYPFGIPMELIKELAKNDKVITIVASESQKNTVITQYTQSGVNLSNCDFIIAKTDSYWTRDYTGWFAMYDTNKVGLVDFIYNRPRPNDDEFPKYEAQYLGIEMFGMKLKQTGGNYMTDGYGSAVQSHIAYTENSSLSQAQVNQKMKDYLGITHHDVVQDPNGEYINHVDCWGKYLAPNKILIRKVPDNHPQHQALEDMAAYFAAQTCAWGTKYEVYRALATNEQPYTNSLILNNRVFVPVNGPASVDNDALNVYKTAMPGYEIIGVKGASGTPWLGTDALHCRTHEVADKGYLYIKHYPILGEQAGPDYKIEADVVSCANATISPVQCYYRINGSGSFKAADMTMESTGHYTYSFTGLNKNDKVEYYISAADNSGRKETYPFIGEPDPFKFTCMNETNTCTVTGAAKALRAWFNAGRSELAVSVSLNIAGTYRIKLYNTAGEEVAAMTKELVAGTSVFSMDVYSQAPGTYVLVVEGNGIRETMKILK","1510900 1509233","McGraw, et al. (1999) suggest that this enzyme is a virulence factor responsible for production of ammonia and adhesin properties.TIGR ID: PG1424","peptidylarginine deiminase","Periplasm, Extracellular","PG1249 is identical to a previously sequenced P.gingivalis protein in Genbank, AAF06719. PG1249 is essentially identical to a previously sequenced P.gingivalis protein in Genbank, AAD38981.One weak hit in gapped BLAST; e.g. residues 79-355 are 24% similar to gb|AAF11904.1|AE002066_8 conserved hypothetical protein of Deinococcus radiodurans.","
InterPro
IPR007466
Family
Porphyromonas-type peptidyl-arginine deiminase
PF04371\"[55-357]TPAD_porph
noIPR
unintegrated
unintegrated
G3DSA:3.75.10.10\"[43-368]TG3DSA:3.75.10.10
SSF55909\"[47-358]TSSF55909


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Tue Jun 5 09:32:04 MDT 2001","Tue Mar 6 08:43:06 MST 2001","Tue Mar 6 08:43:06 MST 2001","Mon Mar 5 17:21:15 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1-114 are 45% similar to PG1815, a probable peptidylarginine deiminase.","Tue Mar 6 09:50:31 MST 2001","Mon Mar 5 17:21:15 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 55 to 357 (E-value = 1.1e-113) place PG1249 in the PAD_porph family which is described as Porphyromonas-type peptidyl-arginine deiminase (PF04371)","Tue May 8 16:22:58 MDT 2001","34541100","Tue Mar 6 08:43:06 MST 2001","McGraw,W.T., Potempa,J., Farley,D. and Travis,J. 1999. Purification, characterization, and sequence analysis of apotential virulence factor from Porphyromonas gingivalis,peptidylarginine deiminase. Infect. Immun. 67 (7): 3248-3256. PubMed: 10377098. Pubmed: 10377098.","","Tue Mar 6 08:43:06 MST 2001","","1","","","PG1424" "PG1250","1511077","1511379","303","ATGAAATATAATAAACCTGTTTTCTTGCTTTTTGAGCCCTTTGCAAAAAGAGAAGGTCATCAAGAAGTATCTTTTCGGTATCGTTTTTGCTCACCTATAGAGTGTATCGCACAAGTCATGGAGGAGGCTTTAGAGGTATTCATATCTATAATGACACTGAAAAATCAGTCAATTGACAATGAAATCTCCCGGAAAATGCCGTGCGACAGTCTTATCTATCGGTTTCACAGCTCGCACGGAACCTCCCACTCCCCGATCCTGCCATCCGACACAGAGCAGATAGCATCTTCCATCAATAGACCA","6.90","-0.19","11679","MKYNKPVFLLFEPFAKREGHQEVSFRYRFCSPIECIAQVMEEALEVFISIMTLKNQSIDNEISRKMPCDSLIYRFHSSHGTSHSPILPSDTEQIASSINRP","1511077 1511379","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm, Periplasm","No significant hits in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Feb 6 15:29:54 MST 2001","Tue Feb 6 15:25:25 MST 2001","Tue Feb 6 15:25:25 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","PG1250 is similar to PG0078 and PG0181.1, hypothetical proteins. Residues 10-101 are 74% similar to PG0078.","Mon Jun 4 13:38:05 MDT 2001","Tue Mar 6 09:52:07 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jun 4 13:38:05 MDT 2001","","","","","","","1","","","" "PG1251","1514489","1511961","2529","ATGAAAAAAAGTTTTCTTTTAGCCATAGTAATGCTCTTTGGCATTGCCATGCAGGGACATTCTGCTCCGGTTACGAAAGAGCGAGCTTTGAGTCTGGCTCGGCTGGCTTTGCGACAGGTATCCTTGCGAATGGGACAAACAGCAGTATCTGACAAGATTTCCATCGATTACGTTTATCGGCAAGGAGATGCTGAGAGGGGTATCACATCACAAGAGGAAGGCTCTCCTGCATATTTTTATGTAGCTAATCGTGGAAATAATGAGGGCTATGCTCTTGTAGCAGCAGATGACAGAATACCGACAATTTTAGCCTATTCACCCATTGGCCGTTTCGACATGGACAGTATGCCGGACAATCTTCGCATGTGGCTACAAATTTACGATCAGGAAATAGGCCTGATACTTTCCGGAAAAGCTCAGCTCAATGAAGAGATATTACGTACCGAGGGCGTACCGGCTGAAGTACATGCTCTGATGGATAACGGTCATTTTGCCAACGATCCCATGCGATGGAATCAAGGTTACCCATGGAACAATAAGGAACCACTGCTTCCTAATGGCAATCATGCCTATACCGGCTGTGTTGCTACTGCTGCAGCACAAATCATGCGCTACCATAGCTGGCCGCTTCAAGGTGAAGGCTCTTTCGATTATCATGCAGGTTCATTAGTTGGCAACTGGTCCGGCACATTTGGTGAAATGTACGACTGGATCAATATGCCCGGAAATCCCGACCTTGATAATCTGACTCAATCTCAAGTGGATGCCTACGCCACACTGATGCGTGATGTGAGTGCATCTGTTTCGATGAGTTTTTATGAAAATGGAAGTGGTACGTACAGCGTTTATGTAGTAGGAGCCTTGCGAAACAACTTTCGCTACAAGCGTTCACTGCAGCTACATGTACGCGCCTTATATACCTCACAGGAGTGGCACGATATGATCCGCGGGGAACTTGCCTCCGGAAGGCCGGTCTATTATGCAGGGAATAACCAGAGCATAGGACATGCTTTCGTTTGCGATGGTTATGCTTCGGATGGTACTTTCCATTTCAACTGGGGTTGGGGAGGTGTTTCCAACGGCTTCTACAAACTAACACTCCTCTCGCCGACTTCGTTGGGTATCGGAGGTGAGGGAATAGGTTTTACCATTTATCAAGAGATCATCACCGGTATCGAACCGGCTAAGACTCCCGCTGAAGCCGGTACAGATGCCTTGCCGATCTTGGCACTGAAAGACATAGAAGCCGAGTATAAAAGTGAATCCGGATTGAACGTAGGGTATTCGATATATAATACAGGTGAAGAGCAATCAAATCTTGACCTCGGATACAGATTGAACAAGGCTGACGGAGAAGTCATAGAGGTGAAAACTTCATCTATCAATATCTCTTGGTACGGATACGGAGAGCATCCCGAGAGTTTCTCATTGGCACCTAATCAGTTGTCACAAGGAATCAACACCATCACCCTACTTTATCGTCGCACAGGCACCGAACAGTGGGAGCCGGTACGGCATGCACAGGGAGGATATGTCAATAGCATTAAAGTAAATACGACAGACCCGAACAATGTCGTAGTCACGGTAGATAATAACGAAGGCAAGCTCAGTATCGTCCCCAACAGCTTTGTCGCAGATCTGAATTCTTATGAACATAGTACGATTACAGTACAGTTCAATAGCGACAGCCCTGATGAGATCCGTACACCCGTAGCCTTTGCTCTATCTACAGGAGCTACTGCGGACGATGTAATATCTTTGGGCTGGGTAATGGCTGAAGTTCCGGGCGGTAGCAGCAACTATCCGGTGGTTTGGTCTAAAGACGTTCTCACTCTCTCGGAAGGCGACTATACATTGTGGTATAGATTTTCCATCAACAACCAAAAGGATGAATGGAAAAAGATCGGAAGCGTGTCAGTAAAAACACCGACAGAGTATACGCACCCCTTATTCGAAGTGGGCCATAATCAAACTTCTACCTATACGCTGGATATGGCACACAACAGAGTATTGCCCGACTTTACACTCAAAAATCTCGGATTGCCTTTCAATGGTGAGTTGGTTGTTGTTTTCCGCCAAACACAATCCTCATCGGGGTCTTTATGGGCAGCTCAAGAAACAGTACATATCAAGCAAGGAGAAACTTTCGTATATAAACCTGTTGTCGAAGGCCCTATACCTGATGGATCCTATCGTGCGACCCTCCATGCATTCGTAAACGGACAACAACAGTTGTACCTCAAGGGGAAAAGGAACTACACGGTGAAGATCGTCAATGGTACAGCGGTAGAAGCAATAGAATCGTCAGAAGAGATCAGAGTATTCCCTAATCCGGCACGCGATTATGTGGAAATATCGGCACCTTGCATTCCCCAAGAAACATCTATCATTCTTTTCGATCTGTCAGGCAAGATTGTCATGAAGAATAGTTTATCAGCGGGGCATGGCAGAATGGATGTCAGCCGACTTCCTAATGGGGCCTACATCCTTAAGGTGGATGGATATACGACGAAAATAAATATAGTGCAC","5.20","-21.25","93123","MKKSFLLAIVMLFGIAMQGHSAPVTKERALSLARLALRQVSLRMGQTAVSDKISIDYVYRQGDAERGITSQEEGSPAYFYVANRGNNEGYALVAADDRIPTILAYSPIGRFDMDSMPDNLRMWLQIYDQEIGLILSGKAQLNEEILRTEGVPAEVHALMDNGHFANDPMRWNQGYPWNNKEPLLPNGNHAYTGCVATAAAQIMRYHSWPLQGEGSFDYHAGSLVGNWSGTFGEMYDWINMPGNPDLDNLTQSQVDAYATLMRDVSASVSMSFYENGSGTYSVYVVGALRNNFRYKRSLQLHVRALYTSQEWHDMIRGELASGRPVYYAGNNQSIGHAFVCDGYASDGTFHFNWGWGGVSNGFYKLTLLSPTSLGIGGEGIGFTIYQEIITGIEPAKTPAEAGTDALPILALKDIEAEYKSESGLNVGYSIYNTGEEQSNLDLGYRLNKADGEVIEVKTSSINISWYGYGEHPESFSLAPNQLSQGINTITLLYRRTGTEQWEPVRHAQGGYVNSIKVNTTDPNNVVVTVDNNEGKLSIVPNSFVADLNSYEHSTITVQFNSDSPDEIRTPVAFALSTGATADDVISLGWVMAEVPGGSSNYPVVWSKDVLTLSEGDYTLWYRFSINNQKDEWKKIGSVSVKTPTEYTHPLFEVGHNQTSTYTLDMAHNRVLPDFTLKNLGLPFNGELVVVFRQTQSSSGSLWAAQETVHIKQGETFVYKPVVEGPIPDGSYRATLHAFVNGQQQLYLKGKRNYTVKIVNGTAVEAIESSEEIRVFPNPARDYVEISAPCIPQETSIILFDLSGKIVMKNSLSAGHGRMDVSRLPNGAYILKVDGYTTKINIVH","1514489 1511961","TIGR ID: PG1427","thiol protease (PrtT related)","Outer membrane, Extracellular","Several hits in gapped BLAST to previously sequenced P. gingivalis sequences (PRTT_PORGI or PG1356) and to other sequences, e.g. residues 74-394 are 33% similar to exotoxin B of Strep pyogenes (L26141). ","
InterPro
IPR000200
Family
Peptidase C10, streptopain
PD004169\"[142-394]TPeptidase_C10
PR00797\"[187-211]T\"[256-272]T\"[284-303]T\"[317-341]T\"[349-370]T\"[371-392]TSTREPTOPAIN
PF01640\"[4-394]TPeptidase_C10
noIPR
unintegrated
unintegrated
SSF54001\"[55-394]TSSF54001


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 571-807 are 24% similar to a (HEMIN-REGULATED PROTEIN THIOL PROTEASE/HEMAGGLUTININ) protein domain (PD039116) which is seen in P72198_PORGI.Residues 119-394 are 50% similar to a (EXOTOXIN B PYROGENIC PYROGEN) protein domain (PD004169) which is seen in PRTT_PORGI.Residues 1-118 are 29% similar to a (THIOL PROTEASE/HEMAGGLUTININ PRTT) protein domain (PD133794) which is seen in PRTT_PORGI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Dec 12 14:57:42 MST 2000","Tue Dec 12 14:47:24 MST 2000","Tue Dec 12 14:47:24 MST 2000","","Tue Mar 6 10:22:53 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1-841 of PG1251 are 34% similar to PG1356, a protease/hemagglutinin PrtT protein. Weak similarities are seen to PG1838, immunoreactive antigen, and PG0592, a hypothetical protein.","Mon Jun 4 14:41:38 MDT 2001","Tue Mar 6 10:22:53 MST 2001","-50% similar to PDB:1PVJ Crystal structure of the Streptococcal pyrogenic exotoxin B (SpeB)- inhibitor complex (E_value = 6.3E_45);-50% similar to PDB:1DKI CRYSTAL STRUCTURE OF THE ZYMOGEN FORM OF STREPTOCOCCAL PYROGENIC EXOTOXIN B ACTIVE SITE (C47S) MUTANT (E_value = 7.0E_44);-34% similar to PDB:1DT0 CLONING, SEQUENCE, AND CRYSTALLOGRAPHIC STRUCTURE OF RECOMBINANT IRON SUPEROXIDE DISMUTASE FROM PSEUDOMONAS OVALIS (E_value = 7.0E_44);-39% similar to PDB:1GBG BACILLUS LICHENIFORMIS BETA-GLUCANASE (E_value = 7.0E_44);-42% similar to PDB:1L1Y The Crystal Structure and Catalytic Mechanism of Cellobiohydrolase CelS, the Major Enzymatic Component of the Clostridium thermocellum cellulosome (E_value = 7.0E_44);","","","Residues 1 to 394 (E-value = 1.7e-111) place PG1251 in the Peptidase_C10 family which is described as Peptidase C10 family (PF01640)","Tue May 8 16:27:22 MDT 2001","34541102","","Otogoto,J. and Kuramitsu,H.K. 1993. Isolation and characterization of the Porphyromonas gingivalis prtT gene, coding for protease activity. Infect. Immun. 61 (1): 117-123. PubMed: 8093357.Madden,T.E., Clark,V.L. and Kuramitsu,H.K. 1995. Revised sequence of the Porphyromonas gingivalis prtT cysteine protease/hemagglutinin gene: homology with streptococcal pyrogenic exotoxin B/streptococcal proteinase. Infect. Immun. 63 (1): 238-247. PubMed: 7806362.","","Tue Mar 6 10:22:53 MST 2001","","1","","","PG1427" "PG1252","1515115","1514633","483","ATGGCTACAGCTTATCATAACTTATCCGACTACGACTACGAGAGCGTTCCCTGCGGCAAAGACTTACGTATAGGAATTGCCGTTGCTGAATGGAATCACAATATCACAGAGCCACTGATGAAAGGGGCTATCGATACCCTTTTGGAGCATGGTGTGTCGGCTGACAATATCATCGTACAGCATGTTCCCGGCACTTTCGAACTTACCTATGCAAGCGCATACCTTGCCGAACAGCATGAAGTAGATGCAGTGATCGCTATCGGCTGTGTAGTCAGAGGCGACACCCCCCACTTCGACTATATCTGCCAAGGGGTAACACAGGGAATCACCCAGTTGAACATTGACGGCTTTGTACCAGTCATTTTCGGAGTCCTTACCACGGAAACAATGCTTCAGGCCGAAGAGCGTGCCGGGGGCAAGCATGGCAACAAAGGCACGGAAGCAGCCGTTACAGCTCTTAAAATGGCAGGATTGGAAAGAATA","4.60","-10.46","17341","MATAYHNLSDYDYESVPCGKDLRIGIAVAEWNHNITEPLMKGAIDTLLEHGVSADNIIVQHVPGTFELTYASAYLAEQHEVDAVIAIGCVVRGDTPHFDYICQGVTQGITQLNIDGFVPVIFGVLTTETMLQAEERAGGKHGNKGTEAAVTALKMAGLERI","1515115 1514633","The alpha subunit is PG0661.TIGR ID: PG1428","riboflavin synthase beta subunit (6,7-dimethyl-8-ribityllumazine synthase) (DMRL synthase) (lumazine synthase)","Cytoplasm","Numerous significant hits to riboflavin synthase beta chain (6,7-dimethyl-8-ribityllumazine synthase) in gapped BLAST; e.g. residues 19-160 are 50% similar to pir||T50544 riboflavin synthase complex beta chain of Bacillus amyloliquefaciens, residues 13-158 are 45% similar to gb|AAC06489.1| riboflavin synthase beta subunit of Aquifex aeolicus, residues 13-160 are 47% similar to dbj|BAB05276.1| 6,7-dimethyl-8-ribityllumazine synthase of Bacillus halodurans.","
InterPro
IPR002180
Family
6,7-dimethyl-8-ribityllumazine synthase
PD003664\"[23-151]TDMRL_synthase
G3DSA:3.40.50.960\"[7-160]TDMRL_synthase
PF00885\"[19-161]TDMRL_synthase
TIGR00114\"[22-159]Tlumazine-synth
SSF52121\"[11-160]TDMRL_synthase
noIPR
unintegrated
unintegrated
PTHR21058\"[11-161]TPTHR21058


","BeTs to 12 clades of COG0054COG name: Riboflavin synthase beta-chainFunctional Class: HThe phylogenetic pattern of COG0054 is amt-yqvcebrhuj----in-Number of proteins in this genome belonging to this COG is 1","***** PF00885 (6,7-dimethyl-8-ribityllumazine synthase) with a combined E-value of 9e-43. PF00885A 23-51 PF00885B 63-101 PF00885C 119-138","Residues 22-150 are 51% similar to a (SYNTHASE RIBOFLAVIN BETA CHAIN) protein domain (PD003664) which is seen in RISB_BACAM.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Tue Mar 26 17:36:30 2002","Tue May 22 14:49:29 MDT 2001","Tue Mar 6 10:13:25 MST 2001","Tue Mar 26 17:36:30 2002","Tue Mar 6 10:13:25 MST 2001","Tue Mar 6 10:13:25 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 6 10:13:25 MST 2001","-70% similar to PDB:1HQK CRYSTAL STRUCTURE ANALYSIS OF LUMAZINE SYNTHASE FROM AQUIFEX AEOLICUS (E_value = 2.1E_34);-70% similar to PDB:1NQU Crystal Structure of Lumazine Synthase from Aquifex aeolicus in Complex with Inhibitor: 6,7-dioxo-5H-8-ribitylaminolumazine (E_value = 2.1E_34);-70% similar to PDB:1NQV Crystal Structure of Lumazine Synthase from Aquifex aeolicus in Complex with Inhibitor: 5-nitroso-6-ribityl-amino-2,4(1H,3H)pyrimidinedione (E_value = 2.1E_34);-70% similar to PDB:1NQW Crystal Structure of Lumazine Synthase from Aquifex aeolicus in Complex with Inhibitor: 5-(6-D-ribitylamino-2,4(1H,3H)pyrimidinedione-5-yl)-1-pentyl-phosphonic acid (E_value = 2.1E_34);-70% similar to PDB:1NQX Crystal Structure of Lumazine Synthase from Aquifex aeolicus in Complex with Inhibitor: 3-(7-hydroxy-8-ribityllumazine-6-yl)propionic acid (E_value = 2.1E_34);","","","Residues 19 to 161 (E-value = 1.4e-57) place PG1252 in the DMRL_synthase family which is described as 6,7-dimethyl-8-ribityllumazine synthase (PF00885)","Thu Mar 15 14:46:31 MST 2001","34541103","","","Gusarov,I.I., Kreneva,R.A., Podcharniaev,D.A., Iomantas,Iu.V., Abalakina,E.G., Stoinova,N.V., Perumov,D.A. and Kozlov,Iu.I. 1997.Riboflavin biosynthetic genes in Bacillus amyloliquefaciens:primary structure, organization and regulation of activity. Mol. Biol. (Mosk.) 31 (3): 446-453. PubMed: 9297088.","","Tue Mar 6 10:13:25 MST 2001","1","","","PG1428" "PG1253","1515893","1515210","684","ATGGCTAAAAAAGAAAATCAACAACCGGACAACCACGTAGGAGAAGTGGTTTCACGCTCAGAGCAGTTCATAGAAAAGAACATGACCAAAATCGGCTTGGTTATTCTGGGCGTTTTTATCATTGTGGCAGGTATTTTTGCCTACAAACGTTTCGTCAGCGAACCTAAAGCTCGTGAAGCTGCTGCCAAGGTATACCTTGCCGAAGACAAATTCATTCAGGAATTGGACAGCGCAGCCTTAAATGGAAACGGTGCAAACGAAATGGGATTGTTGACAGTAATCAAAAAATACTCCGGCTCGGATGCATCCAATCTGGCAAAAGCCTATGCCGGCATTTGCTACTACAACCTCGGAGAATATCAGAAAGCCATTGATCATCTGAAGGGATTCTCCTCCAAGGAAAATATGGTAGCACCATCTATCACTCGTCTTATCGGTGACTGTTATGTACAGCTCAAAAAATATGAAGAGGCCGTAGGCTATTTTGAGAAAGCTGCGGCCGCAGCCTCTAACGATGCCATTACACCGGGCTGTCTCATCAAAGCCGGTCGCGTATACGAAGAGCTCAAACAATACGACAAGGCTCTCGCTGCTTATAAGCAGGTAAAAGAAAAATACTACACATCGATGGAAGCTAATACGGTAGAAGCAGATATCATACGTGTAAAAACCAAAGGAGCGAAA","9.10","4.35","25111","MAKKENQQPDNHVGEVVSRSEQFIEKNMTKIGLVILGVFIIVAGIFAYKRFVSEPKAREAAAKVYLAEDKFIQELDSAALNGNGANEMGLLTVIKKYSGSDASNLAKAYAGICYYNLGEYQKAIDHLKGFSSKENMVAPSITRLIGDCYVQLKKYEEAVGYFEKAAAAASNDAITPGCLIKAGRVYEELKQYDKALAAYKQVKEKYYTSMEANTVEADIIRVKTKGAK","1515893 1515210","TIGR ID: PG1430","hypothetical protein","Periplasm, Inner membrane, Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR001440
Repeat
Tetratricopeptide TPR_1
PF00515\"[111-128]TTPR_1
InterPro
IPR011990
Domain
Tetratricopeptide-like helical
G3DSA:1.25.40.10\"[106-212]TTPR-like_helical
InterPro
IPR013026
Domain
Tetratricopeptide region
PS50005\"[139-172]T\"[176-209]TTPR
PS50293\"[104-209]TTPR_REGION
InterPro
IPR013105
Repeat
Tetratricopeptide TPR_2
PF07719\"[139-172]T\"[176-209]TTPR_2
noIPR
unintegrated
unintegrated
PTHR23083\"[111-200]TPTHR23083
PTHR23083:SF20\"[111-200]TPTHR23083:SF20
SSF48452\"[109-225]TSSF48452


","BeTs to 9 clades of COG0457COG name: TPR-repeat-containing proteinsFunctional Class: RThe phylogenetic pattern of COG0457 is AMTKYQVCEB-HUJ--OLINXNumber of proteins in this genome belonging to this COG is 21","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Mar 6 10:15:02 MST 2001","","Tue Mar 6 10:15:02 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 6 10:15:02 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Mar 6 10:15:02 MST 2001","34541105","","","","","","1","","","PG1430" "PG1254","1516762","1516082","681","ATGATTAGTATCGTACTCGTGGATGACCACGAACTCTATCGGGTAGGTTTGCGTGCTGCCATTAGTCAAATGCAAGGTTTGGCAGAAATCGTAGGTGAATGTAGTTCTTGTGAAGAACTGGAAACGTTTCTGAAAGAACAAAAAGAACCGGGACTAATCATACTGGATATTTGGCTTCCCGATGGGAATGGAGTGAATATTGCTCGTAAGCTAAAGAAGCTATATCCGGCTGTTAAGATTATCATACTGTCTTCCGAAGTATCAGAGAAAACAGTCAATGAACTATTGGCGATTGATGTGGAAGGATACATATGCAAAACAGCTCAGATCAATGATATAGGAAATGCCATCCGCACAGTAACCACGGGTAGCCATTTCTATGGCAAAAGTGTTTCGAAGATGATACTGGATATTTGCGTATCACGTTCCGCAGACCAATCGCATAAGAAAAGCAAAAAACAGCAACAGCAGCAGAACGACTCTTCCGAGCTGACCCAACGAGAGAAAGAAGTAGTACAATATCTGTGCGATGGCTATTCTGCCAAAGAAACAGCCGAAAAAATGCACCTTAGTTACCGAACGGTAGAAACACACCGTAGTAATATTCTGCACAAACTGGGATTCACCAATGCAGCCGAACTGATACGGTATGCCGTAAAGAGCGGATTAGTGGATTGGCAA","6.80","-0.78","25444","MISIVLVDDHELYRVGLRAAISQMQGLAEIVGECSSCEELETFLKEQKEPGLIILDIWLPDGNGVNIARKLKKLYPAVKIIILSSEVSEKTVNELLAIDVEGYICKTAQINDIGNAIRTVTTGSHFYGKSVSKMILDICVSRSADQSHKKSKKQQQQQNDSSELTQREKEVVQYLCDGYSAKETAEKMHLSYRTVETHRSNILHKLGFTNAAELIRYAVKSGLVDWQ","1516762 1516082","TIGR ID: PG1431","response regulator (probable vsrD protein)","Cytoplasm, Outer membrane","Numerous significant hits to regulatory proteins in gapped BLAST; e.g. residues 2-224 are 31% similar to dbj|BAB03325.1| response regulator of Staphylococcus aureus, residues 2-224 are 30% similar to emb|CAB92655.1| putative two-component system DNA-binding response regulator of Streptomyces coelicolor A3(2), residues 1-225 are 30% similar to dbj|BAB04919.1| two-component response regulator of Bacillus halodurans.","
InterPro
IPR000792
Domain
Bacterial regulatory protein, LuxR
PD000307\"[164-219]THTH_LuxR
PR00038\"[164-178]T\"[178-194]T\"[194-206]THTHLUXR
PF00196\"[161-218]TGerE
SM00421\"[161-218]THTH_LUXR
PS50043\"[157-222]THTH_LUXR_2
InterPro
IPR001789
Domain
Response regulator receiver
PD000039\"[2-118]TResponse_reg
PF00072\"[2-118]TResponse_reg
SM00448\"[2-117]TREC
PS50110\"[3-121]TRESPONSE_REGULATORY
InterPro
IPR011006
Domain
CheY-like
SSF52172\"[1-139]TCheY_like
InterPro
IPR011991
Domain
Winged helix repressor DNA-binding
G3DSA:1.10.10.10\"[114-223]TWing_hlx_DNA_bd
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.2300\"[2-106]TG3DSA:3.40.50.2300
SSF46894\"[142-225]TSSF46894


","BeTs to 4 clades of COG2197COG name: Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domainFunctional Class: T,KThe phylogenetic pattern of COG2197 is -------CEBRh---------Number of proteins in this genome belonging to this COG is 2","***** IPB000792 (Bacterial regulatory protein, LuxR family) with a combined E-value of 1.4e-20. IPB000792 164-210","Residues 2-120 are 31% similar to a (PROTEIN SENSORY TRANSDUCTION PHOSPHORYLATION REGULATOR) protein domain (PD000039) which is seen in Q45416_BURSO.Residues 164-220 are 47% similar to a (PROTEIN DNA-BINDING TRANSCRIPTION REGULATION REGULATOR) protein domain (PD000307) which is seen in Q9ZBS6_STRCO.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Mar 15 14:57:10 MST 2001","Tue Mar 6 10:39:33 MST 2001","Tue Mar 6 10:39:33 MST 2001","Tue Mar 6 10:39:33 MST 2001","Tue Mar 6 10:39:33 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 145-225 are 35% similar to PG1093, a probable response regulator protein.","Tue Mar 6 10:39:33 MST 2001","Tue Mar 6 10:39:33 MST 2001","-48% similar to PDB:1A04 THE STRUCTURE OF THE NITRATE/NITRITE RESPONSE REGULATOR PROTEIN NARL IN THE MONOCLINIC C2 CRYSTAL FORM (E_value = 3.3E_14);-48% similar to PDB:1RNL THE NITRATE/NITRITE RESPONSE REGULATOR PROTEIN NARL FROM NARL (E_value = 3.3E_14);","","","Residues 2 to 125 (E-value = 3.1e-21) place PG1254 in the Response_reg family which is described as Response regulator receiver domain (PF00072)Residues 161 to 218 (E-value = 1e-19) place PG1254 in the GerE family which is described as Bacterial regulatory proteins, luxR family (PF00196)","Thu Mar 15 14:57:10 MST 2001","34541106","","","Huang,J., Carney,B.F., Denny,T.P., Weissinger,A.K. and Schell,M.A. 1995. A complex network regulates expression of eps and other virulence genes of Pseudomonas solanacearum. J. Bacteriol. 177 (5): 1259-1267. PubMed: 7868600.","","Thu Mar 15 14:57:10 MST 2001","1","","","PG1431" "PG1255","1518692","1516830","1863","ATGTTTTTAACAAAAAACTATTATTATTGTAGTAGACAAATACAAGACACTATTATGATTAATATACATACGCGACTAACTATCCTGACATTTCTTGGATGTGTCTTTATGCTCTCAGCCAAAGAGATTAATGTAGATTCCCTTTTCCAAATAGCGGCCGACCGGACTCTTTCTGCCACGGAAAAGAAAAAAAGGTATGAGGAGATGGGCAAACAGCTCGAACTGCATCAACAAGTCGGTAGTGCAGCCGATGCATATTCCTTAGCCATCAAGTTCTGCCGTGATGGTGGCTCGACCGAAGAGCTTCCATTTCTGCTTTTAAAGTATGCAACCATGGCGACTCATGCAGGTCGTTATAGCAATGCAATAATGGCTCTAGAAGAAATAATGAGGCTGCTTAAAGACAAAAACGACAACATTATATTAGCCCGCACTTATATGCAGATAGGCATCGTATTTTTCTTTCAGGAAAAGTGGGATGACGCATTGGTATTCTATGAACGTGCGCTACAAATCGCTCAAAAGAAAAAGGAGGAAAGAGGTATCTCTATAGCCTACAACAACATGGCTAACATTTATCAAAAAAAAGGAAATACTCAAGAAGCCTACTCCTATTATAACAAAGCTTTGGATATACAACGAACCAATGGTGATAGTGTAAGTATGTGCAACAGTCTCATGAATATCGGCACAATTATGATCAATGAGAAAAATCCTGAGGATAGCTATAAGCCTTTGAAAGAAGCTCTTACAATAGCATCCAAAATAAATGATATCGAGATCCAGGCCCTATCTTATGCACATCTTGCATATTATTATGCATGGAGAAGCGAATACGGCAAAGCAAATGAAGTGCTCACAATCGCAGAAAATTTGGCATGCCATGCCGGGTATAATCAAACCAGATTGGCAATATTGGATATAGCCAGTTCCATATATGCCGAATACGGCTTGTACTCTTTGGCTTATGAATGCCAAAAAAGATCCAAACTTCTGGCAGACTCTATTGCCGCCAAACAGATGCAAGAAAAAATTACGGAGTTTGACATTCGGTTCAAAAGCAAAGAGAAAGAGGCCGAAATAGCACTGAAAAACCAGGAATTACATTTAGCTCGCAAATTACATATTGCCCTTATCATAATATCCACACTGTTGGTGGCAACCATCATTACCCTTATCATCCATGCAGCAAGGAGATACAGACAAAATAAGAGACTGCGAGAAATGAATGACACCAGAAACAGACTCCTCTCCATTATCTCACACGACATCAAGGGTCCGGCTATAGCACAGAAAATGGCCCTCGACACTATACTATCATCTTCATCTGACTGTGGCTCTATGACTCGGAATATGCTTTCTTCAATACGCAATAGTGTAGCAACAGAATTGACTCTTTTACAGAATTTACTCGATTGGTCTAATATCCAAATCGGGAATTTAGCTCCCAAATTTGTGGTTTTCAACATTGTGGAAAACATTGGAAAGGTGATCAATTTATACTCTATTTCTGCTCGGAATAAAGATATTAGCTTACATTTGGAAGCTCCTAAACAATGTTTGGTTCATGCTGACCAACAAATGATCAATACCGTAATACGCAATTTACTCAGTAATGCAATCAAATTCTCTAAAGCAGGAAGCGTAATACACATCCGTGTGGAAGAAAAAGAGAAAGCCATGGGGATCAAAGTGTCTGTATCAGACAAAGGTATTGGCATGAGCAAAAAACAAATAACCGATATCCTCGAATCGGATAAAAATAAGAAGGCTACAGCCGGGACCGATGGGGAAATAGGTAGCGGATTAGGTTTAATTATCTGCAAAGGTCTGCTCAAAAAAAAACAAAAGCAAGTTATGCAT","9.80","19.74","70156","MFLTKNYYYCSRQIQDTIMINIHTRLTILTFLGCVFMLSAKEINVDSLFQIAADRTLSATEKKKRYEEMGKQLELHQQVGSAADAYSLAIKFCRDGGSTEELPFLLLKYATMATHAGRYSNAIMALEEIMRLLKDKNDNIILARTYMQIGIVFFFQEKWDDALVFYERALQIAQKKKEERGISIAYNNMANIYQKKGNTQEAYSYYNKALDIQRTNGDSVSMCNSLMNIGTIMINEKNPEDSYKPLKEALTIASKINDIEIQALSYAHLAYYYAWRSEYGKANEVLTIAENLACHAGYNQTRLAILDIASSIYAEYGLYSLAYECQKRSKLLADSIAAKQMQEKITEFDIRFKSKEKEAEIALKNQELHLARKLHIALIIISTLLVATIITLIIHAARRYRQNKRLREMNDTRNRLLSIISHDIKGPAIAQKMALDTILSSSSDCGSMTRNMLSSIRNSVATELTLLQNLLDWSNIQIGNLAPKFVVFNIVENIGKVINLYSISARNKDISLHLEAPKQCLVHADQQMINTVIRNLLSNAIKFSKAGSVIHIRVEEKEKAMGIKVSVSDKGIGMSKKQITDILESDKNKKATAGTDGEIGSGLGLIICKGLLKKKQKQVMH","1518692 1516830","The gapped BLAST hits tend to correspond to residues 30-350 and residues 400-600. TIGR ID: PG1432","conserved hypothetical protein","Inner membrane, Cytoplasm","Numerous weak hits in gapped BLAST; e.g. residues 402-597 are 29% similar to gb|AAA22663.1| alkaline phosphatase regulatory protein of Bacillus subtilis, residues 402-592 are 28% similar to emb|CAA71030.1| sensory histidine protein kinase of Calothrix viguieri, residues 410- 578 are 30% similar to dbj|BAA17885.1| sensory transduction histidine kinase.","
InterPro
IPR001440
Repeat
Tetratricopeptide TPR_1
PF00515\"[143-176]T\"[183-216]TTPR_1
InterPro
IPR003594
Domain
ATP-binding region, ATPase-like
G3DSA:3.30.565.10\"[485-619]TATP_bd_ATPase
PF02518\"[524-614]THATPase_c
SM00387\"[524-619]THATPase_c
SSF55874\"[468-619]TATP_bd_ATPase
InterPro
IPR003661
Domain
Histidine kinase A, N-terminal
PF00512\"[412-479]THisKA
SM00388\"[412-479]THisKA
InterPro
IPR005467
Domain
Histidine kinase
PS50109\"[419-621]THIS_KIN
InterPro
IPR009082
Domain
Histidine kinase, homodimeric
SSF47384\"[402-475]THis_kin_homodim
InterPro
IPR011990
Domain
Tetratricopeptide-like helical
G3DSA:1.25.40.10\"[64-292]TTPR-like_helical
InterPro
IPR013026
Domain
Tetratricopeptide region
PS50005\"[103-136]T\"[143-176]T\"[183-216]T\"[223-256]TTPR
PS50293\"[103-256]TTPR_REGION
noIPR
unintegrated
unintegrated
PTHR23283\"[402-609]TPTHR23283
PTHR23283:SF33\"[402-609]TPTHR23283:SF33


","BeTs to 12 clades of COG0642COG name: Sensory transduction histidine kinasesFunctional Class: TThe phylogenetic pattern of COG0642 is AMT-YQVCEBRHUJ--O-inXNumber of proteins in this genome belonging to this COG is 6","No significant hit to the Blocks database.","Residues 155-345 are 23% similar to a (PROTEIN REPEAT TPR DOMAIN NUCLEAR PUTATIVE RECEPTOR) protein domain (PD000069) which is seen in Q55489_SYNY3.Residues 504-597 are 31% similar to a (KINASE PROTEIN SENSORY TRANSDUCTION HISTIDINE SENSOR) protein domain (PD000064) which is seen in O07129_BBBBB.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Tue Mar 6 11:12:46 MST 2001","Tue Mar 6 11:12:46 MST 2001","Tue Mar 6 11:12:46 MST 2001","Tue Mar 6 11:12:46 MST 2001","","Tue Mar 6 11:12:46 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 160-605 are 25% similar to PG1571, a predicted adenylate cyclase. Similarities are also seen to PG0045, a predicted histidine kinase sensor protein.","Tue Mar 6 11:12:46 MST 2001","Tue Mar 6 11:12:46 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 143 to 176 (E-value = 7.1e-06) place PG1255 in the TPR family which is described as TPR Domain (PF00515)Residues 183 to 216 (E-value = 8.1e-09) place PG1255 in the TPR family which is described as TPR Domain (PF00515)Residues 524 to 612 (E-value = 1.9e-08) place PG1255 in the HATPase_c family which is described as Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (PF02518)","Tue Mar 6 11:12:46 MST 2001","34541107","","","","","","1","","","PG1432" "PG1256","1518974","1519186","213","ATGAGTGAGAATAAGACTTATACGGAGGCCATGAGACGCCTCGAAGAAATCGTTCGTGTCATCGAACATGAAAGCCCGGATGTGGACGAGCTGACCAAGCTGGCCGAAGAGGCTATTGCTCTGATTGGTTTCTGTCGTGAGAAACTGACAGTAGCCGACAAGCAGATCGAAGAACTCATGGCCAAACTCTCATGGAGCAAAAACGCTATGCTC","4.60","-4.81","8179","MSENKTYTEAMRRLEEIVRVIEHESPDVDELTKLAEEAIALIGFCREKLTVADKQIEELMAKLSWSKNAML","1518917 1519186","The large subunit is PG1009.TIGR ID: PG1433","probable exodeoxyribonuclease VII small subunit","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR003761
Family
Exonuclease VII, small subunit
PD028235\"[7-59]TExonuc_VII_S


","BeTs to 3 clades of COG1722COG name: Exonuclease VII small subunitFunctional Class: LThe phylogenetic pattern of COG1722 is ------v-ebrh--------xNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 11:43:51 MDT 2001","","Thu Jun 14 11:43:51 MDT 2001","Thu Jun 14 11:43:51 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:43:51 MDT 2001","Thu Jun 14 11:43:51 MDT 2001","","Wed Mar 27 11:33:43 2002","Wed Mar 27 11:33:43 2002","","Wed Mar 27 11:33:43 2002","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Jul 25 12:57:50 2008","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Mar 27 11:33:43 2002","34541108","","","","","","1","","","PG1433" "PG1257","1519165","1519830","666","ATGGAGCAAAAACGCTATGCTCTGATCGTAGCCGGTGGTCATGGGCTACGTATGGGGGCCGATCGGCCAAAACAGTTTTTGCTTTTGGCCGGTCTACCGGTGCTGATGCATACGCTGAATCGCTTTGCCCCTCATGTCGATGCTATTGTATTGGTATTGCCCACAGATCATCATGCTTATTGGCAGGAATTGTGCCGGAAGTATGACTTTTCGGTCTCTCATCGAGTGGTTGCAGGTGGAAATACACGTTTCGCCTCTGTTCGGAATGGATTGCAGGTTGTCCCTGATGGTGTTTTGGTTGCTGTTCATGACGGGGTACGTCCTTTGGTCAGTGCTGAAACTATCGATGCCTGTTTCGATCTTGCAGAGTTGAAGGGGGCTGTCGCTCCTTGTCGCCCTATGACCGAATCGCTTCGCTATTATGCCACTGATGGCAATTATGCAGTGGACAGGAGTCGGTACGTCACGGTACAAACTCCACAGACCTTTCGGAGCGAATGGCTTCGAGAGGCCTATCGGCAACCCTATGAAGAGTATTTTACCGATGATTGTTCGGTATATGAACACCATTTTGGCCGACCGGTGGCATTGATTGTCGGTAATATCGAAAATATCAAATTGACTACTCCTCTCGATCTATCCCTTGCCAAACTGTTATTGACATCC","7.20","0.97","24914","MEQKRYALIVAGGHGLRMGADRPKQFLLLAGLPVLMHTLNRFAPHVDAIVLVLPTDHHAYWQELCRKYDFSVSHRVVAGGNTRFASVRNGLQVVPDGVLVAVHDGVRPLVSAETIDACFDLAELKGAVAPCRPMTESLRYYATDGNYAVDRSRYVTVQTPQTFRSEWLREAYRQPYEEYFTDDCSVYEHHFGRPVALIVGNIENIKLTTPLDLSLAKLLLTS","1519165 1519830","TIGR ID: PG1434","probable 4-diphosphocytidyl-2c-methyl-D-erythritol synthase (MEP cytidylyltransferase) (MCT)","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 8-206 are 37% similar to pir||S66119 conserved hypothetical protein yacM of Bacillus subtilis, residues 8-206 are 37% similar to sp|Q06755|ISPD_BACSU 4-diphosphocytidyl-2C-methyl-D-erythritol synthase (MEP cytidyltransferase) (MCT) of Bacillus subtilis, residues 2-172 are 32% similar to emb|CAA55303.1| bifunctional Ribulose 5-phosphate reductase/CDP-ribitol pyrophosphorylase of Haemophilus influenzae.","
InterPro
IPR001228
Domain
4-diphosphocytidyl-2C-methyl-D-erythritol synthase
PF01128\"[6-222]TIspD
InterPro
IPR008233
Family
4-diphosphocytidyl-2-methyl-D-erythritol synthase
PIRSF006765\"[5-222]TDPCME_synth
noIPR
unintegrated
unintegrated
G3DSA:3.90.550.10\"[4-221]TG3DSA:3.90.550.10
SSF53448\"[1-222]TSSF53448


","BeTs to 10 clades of COG1211COG name: 4-diphosphocytidyl-2-methylerithritol synthaseFunctional Class: IThe phylogenetic pattern of COG1211 is ---k-qvcebrhujgp-lin-Number of proteins in this genome belonging to this COG is 1","***** IPB001228 (Uncharacterized protein family UPF0007) with a combined E-value of 2.6e-27. IPB001228A 76-94 IPB001228B 100-110 IPB001228C 151-163 IPB001228D 182-217","Residues 8-127 are 42% similar to a (TRANSFERASE PYROPHOSPHORYLASE PROTEIN BIOSYNTHESIS) protein domain (PD000318) which is seen in YACM_BACSU.Residues 8-130 are 39% similar to a (PROTEIN 229AA LONG SLR0951) protein domain (PD105465) which is seen in YNR3_RHOCA.Residues 8-201 are 26% similar to a (PROTEIN CONSERVED PUTATIVE) protein domain (PD120151) which is seen in Q9ZM19_BBBBB.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon Mar 26 08:44:41 MST 2001","Tue Mar 6 11:28:01 MST 2001","Tue Apr 22 13:43:02 2003","Tue Mar 6 11:28:01 MST 2001","Tue Mar 6 11:28:01 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 6 11:28:01 MST 2001","-48% similar to PDB:1W77 2C-METHYL-D-ERYTHRITOL 4-PHOSPHATE CYTIDYLYLTRANSFERASE (ISPD) FROM ARABIDOPSIS THALIANA (E_value = 3.4E_16);-47% similar to PDB:1VGW Crystal structure of 4-diphosphocytidyl-2C-methyl-D-erythritol synthase (E_value = 2.7E_13);-47% similar to PDB:1VGZ Crystal structure of 4-diphosphocytidyl-2C-methyl-D-erythritol synthase (E_value = 2.7E_13);-46% similar to PDB:1VPA Crystal structure of 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (TM1393) from Thermotoga maritima at 2.67 A resolution (E_value = 7.4E_11);-41% similar to PDB:1H3M STRUCTURE OF 4-DIPHOSPHOCYTIDYL-2C-METHYL-D-ERYTHRITOL SYNTHETASE (E_value = 9.6E_11);","","","Residues 6 to 222 (E-value = 6.1e-43) place PG1257 in the IspD family which is described as Uncharacterized protein family UPF0007 (PF01128)","Fri Mar 23 16:03:22 MST 2001","34541109","","","","","","1","","","PG1434" "PG1258","1520446","1521669","1224","ATGAAGAGTCAATTTCGTTCAGTTTTTTACTTGCGCAGCAATTACATCAACAAAGAAGGCAAGACGCCCATCCTCATTCGGATTTATCTGAATAAGGAGCGTTTGTCGCTGGGGTCTACAGGCCTGTCTGTCAATGCCCAATTATGGGATTCAGAAAAAGAAAAAGTCAAAGGACATAGTGCAGAAGCACTTGAAGTCAATCGAAAGATCGAAGAAATCAGGGCTGATATTCTGACCATTTACAAACGTTTGGAAGTAACAGTAGATGATTTGACGCCGGAGAGGATCAAATCGGAATACTGCGGACAGACGGATACATTAAACAGTATAGTGGAACTTTTCGATAAACATAACGAGGATGTCCGGGCCCAGGTGGGAATCAATAAAACGGCTGCCACTTTACAAAAATACGAAAACAGCAAACGGCATTTTACCCGATTCCTCAAAGCGAAGTACAACAGAACGGATCTCAAATTCTCAGAGCTTACCCCGTTGGTCATTCATAACTTTGAGATATATCTGCTGACTGTAGCTCATTGTTGTCCGAATACGGCAACCAAAATCTTGAAGCTTTTCAAAACCATTACTCTTTATGGGCGCAGACATGGATTTCTGTCTCATGACCCCTTTGTGAACAAGCGGTTTCATACGCAAGATTCCAGCAGAGGGTTTCTAACCGATGAAGAAATTCAGCGAATCATTGGAAAAGAAATATCCATACCCAGATTGGATTTGGTTCGCGATATTTTCATATTCTCCTGTTTCAGTGGCCTGGCGTATATTGATGTGTCCAATTTAACCGAGGATAACATCGTTGAATTGGACGGACGTGAATGGATCATGACCAGACGCCAGAAAACAAGGGTAGCCACCAATATCATCCTGCTCGACATCCCCAAGAGGATTATCGAGAAATATGCTCCTGTCCGGAAAAACGGTCATCTCTTGCCGATTCTCTCCAATCAGAAGATGAATGCCTATCTGAAAGAGATAGCCGATTTGTGCAATATCCGCAAACCCCTTTCCTTTCATATGGCAAGGTATAGAGAATTTTATAAACATCAAATAATCAATAGATTATATTGTATGTCAATAAAGGGAGGTAACGAAAAGGAAACCAGCGAGCTTCTATACTCCACCTTATTTTGCCATTTCAAAGAACCACTTTTTGTTGATTGCAAAGATAGTGATTTTTTCAATAATATGATAGCAATAGAGGAATTA","9.60","13.54","47712","MKSQFRSVFYLRSNYINKEGKTPILIRIYLNKERLSLGSTGLSVNAQLWDSEKEKVKGHSAEALEVNRKIEEIRADILTIYKRLEVTVDDLTPERIKSEYCGQTDTLNSIVELFDKHNEDVRAQVGINKTAATLQKYENSKRHFTRFLKAKYNRTDLKFSELTPLVIHNFEIYLLTVAHCCPNTATKILKLFKTITLYGRRHGFLSHDPFVNKRFHTQDSSRGFLTDEEIQRIIGKEISIPRLDLVRDIFIFSCFSGLAYIDVSNLTEDNIVELDGREWIMTRRQKTRVATNIILLDIPKRIIEKYAPVRKNGHLLPILSNQKMNAYLKEIADLCNIRKPLSFHMARYREFYKHQIINRLYCMSIKGGNEKETSELLYSTLFCHFKEPLFVDCKDSDFFNNMIAIEEL","1520446 1521669","TIGR ID: PG1435","transposase","Cytoplasm","A few significant and weak hits in gapped BLAST; e.g. residues 1-348 are 34% similar to gb|AAC80279.1| transposase of Bacteroides fragilis, residues 129-313 are 35% similar to gb|AAG12447.1| integrase-like protein Int of Bacteroides fragilis, residues 23-341 are 26% similar to gb|AAF74726.1|AF251288_3 integrase of Bacteroides fragilis.","
InterPro
IPR010998
Domain
Integrase, Lamba-type, N-terminal
SSF47823\"[109-211]TL_intgrse_like_N
InterPro
IPR011010
Domain
DNA breaking-rejoining enzyme, catalytic core
SSF56349\"[223-347]TDNA_brk_join_enz
InterPro
IPR013762
Domain
Integrase-like, catalytic core, phage
G3DSA:1.10.443.10\"[224-347]TPhage_intgr_like


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 19-337 are 23% similar to a (INTEGRASE INTN1) protein domain (PD141349) which is seen in Q45794_BACUN.Residues 1-321 are 34% similar to a (TRANSPOSASE) protein domain (PD214991) which is seen in Q9ZI85_BACFR.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Mar 6 11:53:17 MST 2001","Tue Mar 6 11:53:17 MST 2001","Tue Mar 6 11:53:17 MST 2001","","Tue Mar 6 11:53:17 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1-349 are 51% similar to PG0749, a possible transposase. Similarites are also seen to PG0994, a predicted transposase. Weaker similarities are seen to PG0994, PG1272, PG0735, PG0750, PG0736, PG1271, all predicted integrase proteins.","Tue Mar 6 11:53:17 MST 2001","Tue Mar 6 11:53:17 MST 2001","-48% similar to PDB:1DKG CRYSTAL STRUCTURE OF THE NUCLEOTIDE EXCHANGE FACTOR GRPE BOUND TO THE ATPASE DOMAIN OF THE MOLECULAR CHAPERONE DNAK (E_value = );-51% similar to PDB:2IEW Crystal structure of Inositol Phosphate Multikinase Ipk2 from S. cerevisiae (E_value = );-51% similar to PDB:2IF8 Crystal structure of Inositol Phosphate Multikinase Ipk2 in complex with ADP and Mn2+ from S. cerevisiae (E_value = );-44% similar to PDB:1F8W CRYSTAL STRUCTURE OF NADH PEROXIDASE MUTANT: R303M (E_value = );-44% similar to PDB:1JOA NADH PEROXIDASE WITH CYSTEINE-SULFENIC ACID (E_value = );","","","No significant hits to the Pfam 11.0 database","Tue Mar 6 11:53:17 MST 2001","34541110","","","Vedantam,G., Novicki,T.J. and Hecht,D.W. 1999. Bacteroides fragilis transfer factor Tn5520: the smallest bacterial mobilizable transposon containing single integrase and mobilization genes that function in Escherichia coli. J. Bacteriol. 181 (8): 2564-2571. PubMed: 10198023.","","Tue Mar 6 11:53:17 MST 2001","1","","12","PG1435" "PG1259","1521799","1523814","2016","ATGAGCAAGATTAATATTGATAGAATTGTCAAGGATATTAAGTCTAAAACGACAAGTTTAACACCTGTCATTGAAGCTGTTTGTAATTCAATTGATGCAATTGGTTCAGAAAGAACCGATGGCATTATTGACATTATTGTGAAGAGAAGCGGGCAGCAATCTTTAGAATTAGACACCACTCATACTTTATCAGACATTATTTCTATCGATGTCATTGATAATGGAATTGGTTTTACTGAGGAAAATAAGAATTCTTTTGATACATACAGAAGTGGCTTCAAAATGTCAAAAGGAGGTAAAGGCTTCGGTCGATTTATGTACCTAAAATACTTTTATCATGTCTCAATTGAAAGTATCTTCTATGAAGAGGGCAAATATAAACAACGTAGTTTTACATTTGGTCACGCAGATGAGATAATAGAAAATGAGCAAATTGTAGATATTGAATCCGACTCTGACCTGCATACAGGTACAGTTTTACATCTTTCTTCCATTAAGTCTTTTGATTTAGATAAAGGGCTTGAAGTTATTGCCAGAAAACTCGTGGAGCGTTTACTTGTATTCTTTGTCCCTGGAGGGGAATATACTCCAAAGATTACGATTAAAGAAGAGAATGGCTCCAATTCAATAGTATTGAATAACTATATTGGAGACAATTCTGATATTCAACAAATTGGTAAAGAAGAAGAGTTTACAATAAAAGGCCGTGAGGATGAATGGGATTTTGTAGTCAAGATTTATAAAATATACTATTCTGCAATAACAAATAAAATTTGTCTGACTGCAAATTTTAGGGAAGTTACAGAGTCAGCGTTGCATAATTATGTGCCTGAATTTAAAGAAACGATGTTCGAGATAACAGAACATGGAACTCAGAAGAACTACATGATAAAAGCGTATGTTCAAGGTAAATATCTAGATGAAAATGTAACAACAGAAAGAGATGGTTTCAATTTTGGAAAAGAAGATGACATTTATTCTGATTTATCTGAGAAACAAATAATGAAAACAACTTCATTAATCATTAAAACGTATTTTTCCGAAGACATAGAAAAACGATATAATGATAAGAAGCAAAAAGTCGAACATTATGTATATACTACAGCACCTTGGAATAAGACTTTGTTAAAAGACGTAGATATGGAATCTATTCCAATAGGAGTTTCAGAATTTGATTTGGAAATGCGCTTCCAAAAAATAAAGTTTGACAAAGAGCAAAATGCAAGGATAGCATTAAAGGAATTGCAAGATAAATACTCATCGGGAGACGAAAGTTGCGATAGCGCACTAGAAGATGAAGCAAATAAAATCTTGAAAAATGTAACAGAAACAGCTAAGAATGATTTGGCTCATTATGTTTGCCAGAGACGTAGAATAATAGAATTGTTTGATGATTTGCGTAAAAGAATAGATGGTGGAAAATCACATAAAGAAAGTGAAATGCATAACCTAATATTTCCTATGATTAAGGATGATAGGGAAATCGGATATGAGGATCATAATCTATGGTTACTTGATGAAAGATTTAATTTTACCCAATATATAGCATCAGATAAAGTCATTTCTAGTTCTGATCATAAAGAGCCAGACCTTGCTATATTCTATGAAAGTGGGCTGTTTTATAGAAATGGAGATAATGCTATCACTTCTCCTATTGCTATTGTTGAATTTAAGCGACCTAAACGCACAAGTTATCCGGATGAAGAAAATCCAATAAATCAAGCATTGCGATATGCGGGTAAAATTCTTGCTGGTAAATATGAGATGCCTAAGGGTGTAGAAGAGGTTATTGTAGATAAAAGCGTAACTCCCGTTTACATATACATTGTATGCGATATCGTTCCTAAAATTGAAGAGTTTGCTGATTTAGCAGGACTTGCTATAAGCCCAGACAAACAAGGATACTTTGGTTATAATCCTAAGTATAATGCATATATTGAAATAAAGAGTTTCAAGAAAGTTATTGATGATGCTAAAATGCGTAATCAAATATTTTTTAAAAAATTAGGTCTGTTA","5.10","-21.00","77485","MSKINIDRIVKDIKSKTTSLTPVIEAVCNSIDAIGSERTDGIIDIIVKRSGQQSLELDTTHTLSDIISIDVIDNGIGFTEENKNSFDTYRSGFKMSKGGKGFGRFMYLKYFYHVSIESIFYEEGKYKQRSFTFGHADEIIENEQIVDIESDSDLHTGTVLHLSSIKSFDLDKGLEVIARKLVERLLVFFVPGGEYTPKITIKEENGSNSIVLNNYIGDNSDIQQIGKEEEFTIKGREDEWDFVVKIYKIYYSAITNKICLTANFREVTESALHNYVPEFKETMFEITEHGTQKNYMIKAYVQGKYLDENVTTERDGFNFGKEDDIYSDLSEKQIMKTTSLIIKTYFSEDIEKRYNDKKQKVEHYVYTTAPWNKTLLKDVDMESIPIGVSEFDLEMRFQKIKFDKEQNARIALKELQDKYSSGDESCDSALEDEANKILKNVTETAKNDLAHYVCQRRRIIELFDDLRKRIDGGKSHKESEMHNLIFPMIKDDREIGYEDHNLWLLDERFNFTQYIASDKVISSSDHKEPDLAIFYESGLFYRNGDNAITSPIAIVEFKRPKRTSYPDEENPINQALRYAGKILAGKYEMPKGVEEVIVDKSVTPVYIYIVCDIVPKIEEFADLAGLAISPDKQGYFGYNPKYNAYIEIKSFKKVIDDAKMRNQIFFKKLGLL","1521742 1523814","TIGR ID: PG1436","conserved hypothetical protein","Cytoplasm","One significant hit in gapped BLAST; e.g. residues 20-671 are 24% similar to gb|AAB91573.2| ylh of Agrobacterium tumefaciens.","
InterPro
IPR003594
Domain
ATP-binding region, ATPase-like
SSF55874\"[23-202]TATP_bd_ATPase


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 439-671 are 29% similar to a (PLASMID PTIA6NC HYPOTHETICAL PROTEIN) protein domain (PD123287) which is seen in O52288_AGRTU.","","Thu Jun 14 11:44:18 MDT 2001","","Thu Jun 14 11:44:18 MDT 2001","Thu Jun 14 11:44:18 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:44:18 MDT 2001","Thu Jun 14 11:44:18 MDT 2001","","","Tue Mar 6 12:11:04 MST 2001","Mon Jun 25 13:55:08 MDT 2001","Tue Mar 6 12:11:04 MST 2001","","Mon Jun 25 13:55:08 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 6 12:11:04 MST 2001","-46% similar to PDB:1BO1 PHOSPHATIDYLINOSITOL PHOSPHATE KINASE TYPE II BETA (E_value = );-50% similar to PDB:1WMX Crystal Structure of Family 30 Carbohydrate Binding Module (E_value = );-50% similar to PDB:1WZX Crystal Structure of Family 30 Carbohydrate Binding Module. (E_value = );-50% similar to PDB:2C24 FAMILY 30 CARBOHYDRATE-BINDING MODULE OF CELLULOSOMAL CELLULASE CEL9D-CEL44B OF CLOSTRIDIUM THERMOCELLUM (E_value = );","","","No significant hits to the Pfam 11.0 database","Mon Jun 25 13:55:08 MDT 2001","34541111","","","","","","1","","12","PG1436" "PG1260","1526753","1524681","2073","ATGATTTTTGATTTTACTAATTATACATTCAGCGGATTGCTTTCCATTTTAGCATCTCTTTATGGAGTTGGCTATCCTTTGATAATGCAGAGTATCGGTAGGATATATACACAATATGATTCTACATTACTTGCGAATAGATTTACGAAAGAGACAATATATAGGGTGTTCCAAGTCCTTCTTATTCTGAATTTGTTATTTGCCGTATCTACCCCTTTTCTGCTACATGCAGAATGGTGGAATATAGGTTTTGTGACTATCCAAGCCATTCTTTTGGTGTTACTGATGGGATTTACTTTTCTACTATTCCAGTTAATGATAAAGTACGAGAACGCGGGAGAACTTCTCAGGCACATAGAAGGAGGACAAATTGACAAATCCAACATTATGGATATTTTTGACTTGGCAATCTATGCAGATTCTAAAAACAATCATCAACTTTATATTGATGCCATGTCAAGTGTGTTTTCATACATAACTGTACAACAGGGTGATGATTATAAGAAACAGAATGATAATGAGATTTTACCGCCAGTTGTATATGATGAGAATGTTGTTGCAATACTTAGAAAAATAAAAGGGTTCATCAGAGAGGATGATGGACATCATCTGTTACATCGAAATAATGATATAGTATCAGTCTTATATAACCAGTTGTCAAAGTCAAGAATTAGCCTGCAAATTCATCAAATGATGTGGTTTTTACTAAATGAGGCTATAACATATAATAACCACTCTTGGTTCAAACAATATTGGCAGTTCGCTGATAGTTATTCAAGTCTACGGTATCGCTTTGTAGCTAATGATACATTAAGACAAGACAAAAAAGAATTTATGCTCCGTCATGTAATGATAGGAACATTACTACTCCATAATGAAAGATATAAATGGCTCAATGATATATTCCTTTATACACATTCAGAGCCAGAATACTATGGCTTAATTCCAAGCACATTTATAGAGATTGTTGAGATGCTTGAAAACATAGATTCGATATGTACTGTTCCTGCTTTTCAACAGCAAAATTTCTATTTTGCAAACGAAATGGGAGGTGTAAATGATGAAAAATTTGTATTTAGGAAAGCGGTAAAGTGTCTGTCTTTACTTGTAATTAGATTATGGACTTTACAGCATCGGAATTTAGACAATATAAATTCTCTCTTTCATATACCATCCTCTCCAATATTGATAGAAGATGCTGAAAGAGCAGCAACTTTAATGGATATGATGAAAGATGATGTAGAGGAGTTTTATAGTAAAGATATTTTTCAATTGATTCCACGATTACTCCCTGTTAATAAGGCAGATATATTATCCTTACTTTTGGATTATCGGGACCAATGCTTAGATACCAAAGAAACCCATCAAAATCATCCTGACGTGGATTATGAAAAATTCTCCAAACTAAAAGAAGAGATAATGTCTTTTGTGAATAACTTTAATATCGCACTTCCACAAAATAATATCATAGCAGAAGTTGATAATCTCATAACAAAGGAAGGTGTTGTAGAAACAAAAGAAAGATTGGAAACCCTTTATTACTCTCCATATAAAAATATTGGGCTTTGTAAGCCTCCTCTTCTGACGAATTTTATGTTTGATTTATATCGTATGTACCTGCGAGTGCTTGGCAGTATGAAAAAGTTATCGTCGTATAAAATAAGTCGGAGTCAAATACAGGGATTTCTGGAAATTATTGGATATAATGATTTAGATTATGCAATAATTACAACAAACAAAATTCAACACCTAAAAAAAACTCATATTAACTTATGTGCAGGAGTTCGATCATTTGAGTTCTTCATTATGAGAAAAAATGATATTCCACATGTATCATTTGGTGAAGTTCAAAGAGATGATTTGAAAATAATAGCTGATAGTAATATTAGTTCAAATATAGATTCTTTCATAGATTGTCATGAGGGGTGTTTTGATCTTATTCTGGCAACGAAGATGGTTGTGCATATAAAAGAAAAAATAGATGGTGTGGTTTATGTTTCTGTAAATGAAGAATATCCAGAACAAGAGAAACCAATTACTATCAATGCCACTTTAGCCGAGTTGTTTGGTAAT","5.60","-15.46","80632","MIFDFTNYTFSGLLSILASLYGVGYPLIMQSIGRIYTQYDSTLLANRFTKETIYRVFQVLLILNLLFAVSTPFLLHAEWWNIGFVTIQAILLVLLMGFTFLLFQLMIKYENAGELLRHIEGGQIDKSNIMDIFDLAIYADSKNNHQLYIDAMSSVFSYITVQQGDDYKKQNDNEILPPVVYDENVVAILRKIKGFIREDDGHHLLHRNNDIVSVLYNQLSKSRISLQIHQMMWFLLNEAITYNNHSWFKQYWQFADSYSSLRYRFVANDTLRQDKKEFMLRHVMIGTLLLHNERYKWLNDIFLYTHSEPEYYGLIPSTFIEIVEMLENIDSICTVPAFQQQNFYFANEMGGVNDEKFVFRKAVKCLSLLVIRLWTLQHRNLDNINSLFHIPSSPILIEDAERAATLMDMMKDDVEEFYSKDIFQLIPRLLPVNKADILSLLLDYRDQCLDTKETHQNHPDVDYEKFSKLKEEIMSFVNNFNIALPQNNIIAEVDNLITKEGVVETKERLETLYYSPYKNIGLCKPPLLTNFMFDLYRMYLRVLGSMKKLSSYKISRSQIQGFLEIIGYNDLDYAIITTNKIQHLKKTHINLCAGVRSFEFFIMRKNDIPHVSFGEVQRDDLKIIADSNISSNIDSFIDCHEGCFDLILATKMVVHIKEKIDGVVYVSVNEEYPEQEKPITINATLAELFGN","1526753 1524681","TIGR ID: PG1439","hypothetical protein","Inner membrane, Cytoplasm","This sequence corresponds to gi:34397428 in Genbank.","
noIPR
unintegrated
unintegrated
signalp\"[1-26]?signal-peptide
tmhmm\"[10-28]?\"[57-77]?\"[87-107]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","Mon Mar 7 15:15:50 2005","Tue Mar 6 12:12:37 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 6 12:12:37 MST 2001","-46% similar to PDB:1TJC Crystal structure of peptide-substrate-binding domain of human type I collagen prolyl 4-hydroxylase (E_value = );-64% similar to PDB:1PY1 Complex of GGA1-VHS domain and beta-secretase C-terminal phosphopeptide (E_value = );-43% similar to PDB:1IRX Crystal structure of class I lysyl-tRNA synthetase (E_value = );-42% similar to PDB:1SDD Crystal Structure of Bovine Factor Vai (E_value = );-52% similar to PDB:1WR8 Crystal structure of hypothetical protein PH1421 from Pyrococcus horikoshii. (E_value = );","","","No significant hits to the Pfam 11.0 database","Tue Mar 6 12:12:37 MST 2001","34541112","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Mon Mar 7 15:15:50 2005","","1","","12","PG1439" "PG1261","1527360","1526746","615","TTGCGAACTAAAATACGCCTTTTGCATAGAAGATATTTACTGAACGTGAAGAGAAATAGAAATAGTTGGAGAAAATCATATATGAATTCATTTGGTTTACCCCTTATAGTAATAATTGCCTTGATTAGCATTATTCTAATTTACATTCGTAAATTGAGAGATAAGAGCGATATTACACCCGACATCAAACAAGATGTTGAGACGGGAGAAATAGACGATTTATTTAATAATACAATAGAAGAAGTAAACACTCACTTCCCTCAAAAGATAAAGCAAAAAGAATTTAGGGTAATACTAAAGAACAAGGGTTGGTGGAATAGGAACAATCCTTTTATTTGGGGGCTGTGTGCTATTTCATTCATAGCTATTCTAATGCTTGTTTTGTCGAGTGTTGCTCACAGGAAATATAGCACTCAACAAGAAATATCTATTCAGAAAGAACACCAAAAGATTTTATACAAAGACTCTATGCAAAATAACAAAGACTCTATGAAAAATGAACAAATTGAACTTATATCTTCTGAACTCTCTGATATTGATAAGACTATCAGGGAGACAAATAGAATAATCCGTAGAGTAGAAAAACAAATAAAAGACATTAAAGAAAATGATTTT","10.60","12.92","24481","LRTKIRLLHRRYLLNVKRNRNSWRKSYMNSFGLPLIVIIALISIILIYIRKLRDKSDITPDIKQDVETGEIDDLFNNTIEEVNTHFPQKIKQKEFRVILKNKGWWNRNNPFIWGLCAISFIAILMLVLSSVAHRKYSTQQEISIQKEHQKILYKDSMQNNKDSMKNEQIELISSELSDIDKTIRETNRIIRRVEKQIKDIKENDF","1527360 1526746","TIGR ID: PG1440","hypothetical protein","Cytoplasm, Inner membrane","This sequence corresponds to gi:34397429 in Genbank.","
noIPR
unintegrated
unintegrated
signalp\"[1-46]?signal-peptide
tmhmm\"[27-49]?\"[111-131]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","Tue Mar 8 10:53:48 2005","Tue Mar 6 12:14:11 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 6 12:14:11 MST 2001","-67% similar to PDB:2FB6 Conserved hypothetical protein BT1422 from Bacteroides thetaiotaomicron. (E_value = );-57% similar to PDB:1C1G CRYSTAL STRUCTURE OF TROPOMYOSIN AT 7 ANGSTROMS RESOLUTION IN THE SPERMINE-INDUCED CRYSTAL FORM (E_value = );-64% similar to PDB:1NT2 CRYSTAL STRUCTURE OF FIBRILLARIN/NOP5P COMPLEX (E_value = );-57% similar to PDB:2D3E Crystal structure of the C-Terminal fragment of rabbit skeletal alpha-tropomyosin (E_value = );-57% similar to PDB:2TMA TROPOMYOSIN CRYSTAL STRUCTURE AND MUSCLE REGULATION. APPENDIX. CONSTRUCTION OF AN ATOMIC MODEL FOR TROPOMYOSIN AND IMPLICATIONS FOR INTERACTIONS WITH ACTIN (E_value = );","","","No significant hits to the Pfam 11.0 database","Tue Mar 6 12:14:11 MST 2001","34541113","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Tue Mar 8 10:53:48 2005","","1","","12","PG1440" "PG1262","1528123","1527698","426","ATGACAGAAAACCAAAACGGCAAGGTAGATCCTGTTGCCATCCGGGAACTTGTTTCACAGGGTATTCCCATGAAAAGAAATGAGAGCGAAATAAAACGCTCTCAATTAGAAGAGCAGTGTGTTGAATCGGAACGTCCAAATGAAGAACCAATGTCAAAGGATTTTTCAAGAGTCCCAAGAAGAGAAAGGCGAAAGGCTGATAAAGGTGATTATGAGTCGCTTTTCATCTGTCGCAACACCTTGAAAAATCGCAAGACCATCTATATTGCCAAAGAGTTGCAAGACACGTTGGCGGAGATAGTCATGTCGATGAGAAACAGGGATATGACCATCGGTATCTATGTGGAGAACATCATCCTCCATCACCTTGAAATCTACAAGGATGAAATCAACAGATTGGCGGAGATGAAATTTAGGAAGCTATTG","8.60","2.39","16855","MTENQNGKVDPVAIRELVSQGIPMKRNESEIKRSQLEEQCVESERPNEEPMSKDFSRVPRRERRKADKGDYESLFICRNTLKNRKTIYIAKELQDTLAEIVMSMRNRDMTIGIYVENIILHHLEIYKDEINRLAEMKFRKLL","1528123 1527698","Possible conserved domain with gb|AAG17827.1|AF289050_2 TraB of Bacteroides thetaiotaomicron.TIGR ID: PG1442","hypothetical protein (TraB-related?)","Cytoplasm","One weak hit in gapped BLAST; e.g. residues 42-130 are 28% similar to gb|AAG17827.1|AF289050_2 TraB of Bacteroides thetaiotaomicron.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Tue Nov 18 15:59:15 2003","Tue Nov 18 15:59:15 2003","Thu Mar 15 15:24:39 MST 2001","Tue Mar 6 12:15:06 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1-142 of PG1262 are 94% similar to PG0745, a hypothetical protein. Weaker similarities are seen to PG1300, a hypothetical protein.","Mon Jun 4 14:43:29 MDT 2001","Tue Mar 6 12:15:06 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Mar 15 15:24:39 MST 2001","34541115","","","Xu,J., Bjursell,M.K., Himrod,J., Deng,S., Carmichael,L.K.,Chiang,H.C., Hooper,L.V. and Gordon,J.I.A Genomic View of the Human-Bacteroides thetaiotaomicron SymbiosisScience 299 (5615), 2074-2076 (2003)PUBMED 12663928","","Tue Nov 18 15:59:15 2003","1","","12","PG1442" "PG1262.1","1528214","1528519","306","ATGCCCGATAATGGGGTTGTACCAGCAGGGCTACATCCTTTCGTTCATACCCTTTTTGTGGAGATGTTCATTGATGTCCATCAATACAATCGTTCGATTGTATCTGCTTTCACACATTTCCACGTTCAAGTGAAAGAATCAAGGACGTGTTCTTCGATATACCCCCTCGCTTATATCGCTCATCGAATCGTGATATCATCGAAGACACATTCCTCCACCGACATATTCGACGGTGCAAATATATGGCTCGGTGATGCTGTAATCAGCGTGATTTACTTTAGTGCGTACTTGTGGCTTCGATTTGGA","","","11541","MPDNGVVPAGLHPFVHTLFVEMFIDVHQYNRSIVSAFTHFHVQVKESRTCSSIYPLAYIAHRIVISSKTHSSTDIFDGANIWLGDAVISVIYFSAYLWLRFG","","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
tmhmm\"[81-99]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Tue Mar 6 12:34:27 MST 2001","","Tue Mar 6 12:34:27 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1-102 of PG1262.1 are 78% similar to PG0744.1, a hypothetical protein.","Mon Jun 4 14:46:34 MDT 2001","Tue Mar 6 12:34:27 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jun 4 14:46:34 MDT 2001","","","","","","","1","","12","" "PG1263","1528889","1529302","414","ATGACAAAGAGAAATGTGGGGCGACCTCCCAAGAATGAACGAGCCGACCATTGTTGTATGGTTCGATTTACGGACACAGAATTTGCTCGTTTCCTAACGCTATTCGAGCAATCGGGGCTTCAAAATAGAGCCGCTTTCATCAAGGCAAGGGTCTTTAATGAGACCTTTCGAGTGATAAAAGTGGATCGTTCGTTGCTCGATTACTACCAAAAACTGACAACTTTGTACGGACAATTTCGCAGTGTCGGGGTGAATTATAACCAAACTGTAGTCGCTTTGAAAAGCAATTTTACGGAGAAGAAAGCCTTTGCGATGCTCACTAAGTTGGAGAAACTGACACTCGAATTGGCTATTATTGGAGGGGAAATCGTACAACTCACTCGTAAATTTCAAGAGAAATGGCAACATCGGCAA","10.80","11.38","16200","MTKRNVGRPPKNERADHCCMVRFTDTEFARFLTLFEQSGLQNRAAFIKARVFNETFRVIKVDRSLLDYYQKLTTLYGQFRSVGVNYNQTVVALKSNFTEKKAFAMLTKLEKLTLELAIIGGEIVQLTRKFQEKWQHRQ","1528889 1529302","TIGR ID: PG1444","hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR000637
Domain
HMG-I and HMG-Y, DNA-binding
SM00384\"[3-15]TAT_hook


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Mar 6 12:43:41 MST 2001","","Tue Mar 6 12:43:41 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","PG1263 is identical to PG0744, a hypothetical protein. Weaker similarities are seen to PG1304, a hypothetical protein.","Tue Mar 6 12:43:41 MST 2001","Tue Mar 6 12:43:41 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Mar 6 12:43:41 MST 2001","34541116","","","","","","1","","12","PG1444" "PG1264","1529715","1529392","324","ATGCGAATGCAGGGACTTCTTCCTGCATTGCCAGTCAGACCTGCTAAGAAACTCTGTTGGACAGGCAAAGCAACAGATTTAGTTGAACTCCTTTATGCTCTCGACACTTGCAACAGTATCAACAACGGAGAAATAGGTGTAGAGGAACTGGCAGACGCTCTCTCGGAGATCTTCGGAGTGGCGATAAAGAACAGCTACAACGTCTATATGAACATGAAACGTCGCAAAGATGATAGCCGCACCTATTTTCTTGATGAACTCCGTGAGAAACTTAATAAGCGTATGGTGGAAAGCGATCTGAAAGGCGGCAAGTTCAAAAAGCGA","10.00","4.90","12357","MRMQGLLPALPVRPAKKLCWTGKATDLVELLYALDTCNSINNGEIGVEELADALSEIFGVAIKNSYNVYMNMKRRKDDSRTYFLDELREKLNKRMVESDLKGGKFKKR","1529715 1529392","TIGR ID: PG1445","possible tetracycline resistance element mobilization regulatory protein","Periplasm, Cytoplasm","One significant hit in gapped BLAST; e.g. residues 18-99 are 53% similar to pir||A36927 tetracycline resistance element mobilization regulatory protein of Bacteroides thetaiotaomicron.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 18-99 are 53% similar to a (RTEC) protein domain (PD112637) which is seen in Q45784_BACTN.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Mar 15 15:32:25 MST 2001","Tue Mar 6 13:02:44 MST 2001","Tue Mar 6 13:02:44 MST 2001","","Tue Mar 6 13:02:44 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1264 is identical to PG0743, a possible mobilization regulatory protein.","Tue Mar 6 13:02:44 MST 2001","Tue Mar 6 13:02:44 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue May 8 16:35:49 MDT 2001","","","","Stevens,A.M., Shoemaker,N.B., Li,L.Y. and Salyers,A.A. 1993. Tetracycline regulation of genes on Bacteroides conjugative transposons. J. Bacteriol. 175 (19): 6134-6141. PubMed: 8407786.Xu,J., Bjursell,M.K., Himrod,J., Deng,S., Carmichael,L.K.,Chiang,H.C., Hooper,L.V. and Gordon,J.I.A Genomic View of the Human-Bacteroides thetaiotaomicron SymbiosisScience 299 (5615), 2074-2076 (2003)PUBMED 12663928","","Tue Nov 18 16:00:22 2003","1","","12","PG1445" "PG1264.1","1530007","1529741","267","ATGTTGAACATAAAAGATATGATTATGCTAAGACTTACTCAAACTGAAGACTTTAAGACAATAATCTCTTTATGCTCTACAAAAGGACAGATACAAAAAGCGTCAGACAACTTTATTCTGAAGATTATTGCCCTATGTGATGCAGAAAGAGATTTAGTCTCATTGTTTCGGACCCTCCGTTATACACGCTTTTGCCTGCAACCTTTGCAAAGGGGAGATTCAATGGACGGAGAGGGGAAAAAATGTATCAGAACTGCTCTTTGTCAT","","","10211","MLNIKDMIMLRLTQTEDFKTIISLCSTKGQIQKASDNFILKIIALCDAERDLVSLFRTLRYTRFCLQPLQRGDSMDGEGKKCIRTALCH","","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No hit found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Tue Mar 6 13:23:49 MST 2001","","Tue Mar 6 13:23:49 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","PG1264.1 is identical to PG0742.1, a hypothetical protein.","Tue Mar 6 13:23:49 MST 2001","Tue Mar 6 13:23:49 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Mar 6 13:23:49 MST 2001","","","","","","","1","","12","" "PG1265","1531320","1530004","1317","ATGAAATCCCTGACAAAGTTGGGGATACCTATTGTCATCGCAATGCTGATTATGGCAATATACAATGTGGTAGATACTTTCTGGGTTGCACGTTTGGGAACTCTTCCTGTCGCTGCCGTATCAGTTGTTTTCCCTTTATCGTTGGTGTTTCTTGGGATAGGGCTGATGTTTGGTGTTGGGGGCGGAGTGTATATATCTCGCTTATTGGGTGCGAAGCAAATTGTCAAGGCTGGTCAGGTAGCTTCCGTCTCAGTGATCACCTCTGTGATTTTAGCTGCTCTCATTGCCCTTGTATGCAATGCGTTTCTACCAGAAATTCTGCTTTTCATGGGGGCAAACGAGGAGATGATGAGCTTAGCGGAAGCATATGGCAGACTGTTCATCGTTAGTTGTGTCATAGGAACGTTGAATGTGTCGATGTCCAATATTATAGTTTCTCAGGGGGCTTCAAAAACGTCTGCATCGGCAATGATAATAGGTTCTGTTATAAATGTCGCATTGGATCCTCTATTTATCTATGCTTTCGGCTGGGGTGTGAAAGGTGCTGCGTGGGCAACCATTCTTTCAAGAATCATTACAACAATCATTTACACCTGCTTCTTTATGAAAGCAGAGGTGAAAGTTTCGTTTGCCTTGTTCGTCCCAACGATAAGAATGTACTTGGACATCATAAAGATAGGTATTTCAATGCTCTGTTTGCAACTCCTCCAAACACTTTCGATTAGTTTATTGCAGAGAGCTGCCGTAAAATATGGGGCAGAGGCTGTAGCAGCAGTAGGCATCGTTCTGAAAATTGTAACATTGGGAACGAACGTGGTTTTCGGATTTGTCAAGGGACTCCAACCGATGGCTGGCTATAACTACGGGGCAGAAAATTTCCAAAGGTTAAAAGAGGCAGTACGTTGTTCCTTGATACTGACAACCTCATTTTGTGTACTTTGGAGCACTTTCATACTCGTTTTTGCTTCTCCTGTTATCAGTTGTTTCGGCAAAGACGAAACAATGCAAGAAATTGCACGAATTGCCCTTAGAGCCAATACGCTAATGTTTTTCACTTTCGGCTTCCAGTTTGTGTATTCCACACTATATATGGCAATCGGAAGAGCAAGACAGAGCCTTTTGCTCAATATTGGACGACAGGGACTCTTCTTTATTCCTGTAATATTGCTGCTCCCATCATATTGGGGATTGAACGGAGTGCTTTATGCACAACCGGTAGCCGACGTCTTTGCAACTTTGATGACACTGTTCTTTGCCATTCAAATTCATAGGGAAATTCGTCATAAATCACATCTCACAACAGAGAATCTACAATGT","10.10","13.33","47747","MKSLTKLGIPIVIAMLIMAIYNVVDTFWVARLGTLPVAAVSVVFPLSLVFLGIGLMFGVGGGVYISRLLGAKQIVKAGQVASVSVITSVILAALIALVCNAFLPEILLFMGANEEMMSLAEAYGRLFIVSCVIGTLNVSMSNIIVSQGASKTSASAMIIGSVINVALDPLFIYAFGWGVKGAAWATILSRIITTIIYTCFFMKAEVKVSFALFVPTIRMYLDIIKIGISMLCLQLLQTLSISLLQRAAVKYGAEAVAAVGIVLKIVTLGTNVVFGFVKGLQPMAGYNYGAENFQRLKEAVRCSLILTTSFCVLWSTFILVFASPVISCFGKDETMQEIARIALRANTLMFFTFGFQFVYSTLYMAIGRARQSLLLNIGRQGLFFIPVILLLPSYWGLNGVLYAQPVADVFATLMTLFFAIQIHREIRHKSHLTTENLQC","1531437 1530004","TIGR ID: PG1446","conserved hypothetical protein (probable integral membrane protein)","Inner membrane, Cytoplasm","Numerous significant hits in gapped BLAST to conserved hypothetical proteins; e.g. residues 2-416 are 28% similar to dbj|BAB05882.1| BH2163 conserved protein of Bacillus halodurans, residues 2-420 are 26% similar to gb|AAK05582.1|AE006378_11 hypothetical protein of Lactococcus lactis subsp. lactis, residues 2-401 are 27% similar to gb|AAB89777.1| conserved hypothetical protein of Archaeoglobus fulgidus.","
InterPro
IPR002528
Family
Multi antimicrobial extrusion protein MatE
PTHR11206\"[24-438]TMatE
PF01554\"[10-170]T\"[229-389]TMatE
TIGR00797\"[10-401]TmatE
InterPro
IPR015522
Family
Na+ driven multidrug efflux pump
PTHR11206:SF6\"[24-438]TMATE_trans_like


","BeTs to 12 clades of COG0534COG name: Probable cation efflux pump (multidrug resistance protein)Functional Class: RThe phylogenetic pattern of COG0534 is amtKYqVCEBrhUJgpOl---Number of proteins in this genome belonging to this COG is 4","No significant hit to the Blocks database.","Residues 260-416 are 21% similar to a (PROTEIN CONSERVED INTEGRAL MEMBRANE) protein domain (PD114832) which is seen in O25796_HELPY.Residues 102-228 are 27% similar to a (PROTEIN TRANSMEMBRANE MVIN MEMBRANE TRANSPORTER) protein domain (PD001019) which is seen in O51429_BORBU.","","Thu Jun 14 11:44:29 MDT 2001","","Thu Jun 14 11:44:29 MDT 2001","Thu Jun 14 11:44:29 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:44:29 MDT 2001","Thu Jun 14 11:44:29 MDT 2001","","","Tue Mar 6 13:47:25 MST 2001","Mon Jun 25 13:59:42 MDT 2001","Tue Mar 6 13:29:01 MST 2001","","Mon Jun 25 13:59:42 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1265 is identical to the first 439 residues PG0742 (length = 478 residues), a predicted conserved hypothetical membrane protein. Weaker similarities are seen to PG0006 (probable integral membrane protein) and PG0577 (predicted DNA damage-inducible protein).","Mon Jun 25 13:59:42 MDT 2001","Tue Mar 6 13:29:01 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 10 to 170 (E-value = 2.3e-32) place PG1265 in the MatE family which is described as MatE (PF01554)Residues 229 to 389 (E-value = 2.1e-19) place PG1265 in the MatE family which is described as MatE (PF01554)","Mon Jun 25 13:59:42 MDT 2001","34541117","","","","","","1","","12","PG1446" "PG1266","1532304","1531459","846","ATGTCCCATTTGCCAATCCATAGAAGTTCGCAACTCACCGATTTTGGAGTCTATCTGAAGACAATTGTATCTAAAACATCTGCATCTTCAGACAGATATGCCTTTTCTCATACCGACGACTATTATTTCTTCGGCTTCATAGAGGGGGGGCAATGTCGTCTGAATATTGATTTCAAGGAATGTACTTTCGAAAAGGATAGTCTGGTTATCATTCGTCCGGGACAGGTACATCGCATCATTGATGCTTACAATCTTTCGGCAAACTTCCTTATTATTGACTCGGTATTGGTAAATAAGGAGGAGAAACGACTATTGGAGCGGCATGGTCGTCAAAAAATCCAAATATTTGACATATCTGAACAGAAACAGTTATTGTCGCTTCTTGCTCACAGACTTAGCTGCACAGAAAATTCATTTTCAAAACCGATCATTCAACGATTAACAACCGTAATAGTGGGGTTGGTTGTAAAGGATGTTGCAGGTGCGACAGAGACTCAATCCGAATTGCAGGGGAATATAAACAGATATAAGGAAATCGCGTGGGATTTTCGGGAATTGCTCGAAAGCAATATCCGAACGAACCGTGCTCCTTCGTTCTATGCCGAACGTTTGAATATAACAGTTGCCTACCTGAATGAAGCGATAAATGCTGTTTGGGGAACGAGTGTAAGTCGGAATATTCAGGATGAAATCATCTTGCAAGCTAAGCGACAATTAGTCTATACAACAACCTCTGTAAAAGAGATAGCACAAGGTTTGGGATTTGACGATTACTCCTACTTCACACGACTATTTACCAAGGTTGCAGGAGTTTCTCCAACGCTTTTCAGAAAGAATTACCACGAA","8.40","3.55","32350","MSHLPIHRSSQLTDFGVYLKTIVSKTSASSDRYAFSHTDDYYFFGFIEGGQCRLNIDFKECTFEKDSLVIIRPGQVHRIIDAYNLSANFLIIDSVLVNKEEKRLLERHGRQKIQIFDISEQKQLLSLLAHRLSCTENSFSKPIIQRLTTVIVGLVVKDVAGATETQSELQGNINRYKEIAWDFRELLESNIRTNRAPSFYAERLNITVAYLNEAINAVWGTSVSRNIQDEIILQAKRQLVYTTTSVKEIAQGLGFDDYSYFTRLFTKVAGVSPTLFRKNYHE","1532334 1531459","PG1266 is part of a long 9927 bp region containing 9 orfs which is repeated with >99% similarity (9915 identical out of 9927) on the opposite strand.TIGR ID: PG1447","possible transcriptional regulator","Cytoplasm, Outer membrane","Several significant hits and numerous weak hits to regulatory proteins in gapped BLAST; e.g. residues 34-277 are 30% similar to (AE005910) transcriptional regulator of Caulobacter crescentus, residues 46-278 are 25% similar to gb|AAG03637.1|AE004463_2 probable transcriptional regulator of Pseudomonas aeruginosa, residues 162-278 are 33% similar to emb|CAB43482.1| pobR regulator of Pseudomonas sp.","
InterPro
IPR000005
Domain
Helix-turn-helix, AraC type
PR00032\"[246-261]T\"[261-277]THTHARAC
PF00165\"[234-278]THTH_AraC
SM00342\"[194-277]THTH_ARAC
PS01124\"[181-279]THTH_ARAC_FAMILY_2
InterPro
IPR003313
Domain
AraC protein, arabinose-binding/dimerisation
SSF51215\"[1-92]TAraC_binding
InterPro
IPR009057
Domain
Homeodomain-like
SSF46689\"[230-280]THomeodomain_like
InterPro
IPR012287
Domain
Homeodomain-related
G3DSA:1.10.10.60\"[230-278]THomeodomain-rel
noIPR
unintegrated
unintegrated
PTHR11019\"[201-279]TPTHR11019
PTHR11019:SF11\"[201-279]TPTHR11019:SF11


","BeTs to 4 clades of COG2207COG name: AraC-type DNA-binding domain-containing proteinsFunctional Class: KThe phylogenetic pattern of COG2207 is ------vCEBRH---------Number of proteins in this genome belonging to this COG is 4","***** IPB000005 (AraC type helix-turn-helix domain) with a combined E-value of 2.5e-09. IPB000005 246-277","Residues 210-278 are 43% similar to a (PROTEIN TRANSCRIPTION REGULATION DNA-BINDING) protein domain (PD000394) which is seen in Q51543_PSEAE.","","Thu Jun 14 11:44:58 MDT 2001","","Thu Jun 14 11:44:58 MDT 2001","Thu Jun 14 11:44:58 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:44:58 MDT 2001","Thu Jun 14 11:44:58 MDT 2001","","Mon Jun 25 14:07:07 MDT 2001","Mon Jun 25 14:07:07 MDT 2001","Mon Jun 25 14:07:07 MDT 2001","Tue Mar 6 14:10:17 MST 2001","Mon Jun 25 14:07:07 MDT 2001","Mon Jun 25 14:07:07 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1266 is identical to residues 11-292 of PG0741 (length = 292 res), a predicted conserved hypothetical protein with DNA-binding domain. Weaker similarities are seen to PG1858, a predicted transcription regulator.","Mon Jun 25 14:07:07 MDT 2001","Tue Mar 6 14:10:17 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 234 to 278 (E-value = 1e-07) place PG1266 in the HTH_AraC family which is described as Bacterial regulatory helix-turn-helix proteins, araC family (PF00165)","Mon Jun 25 14:07:07 MDT 2001","34541118","","","","","","1","","12","PG1447" "PG1267","1532427","1533509","1083","ATGGCATACCAATCCAAGAATACCGATGAGCATGTAACATTTGCAGACGCACTCCTTTCAAAGCGTTATCGCAAAGCACAAAACGACTTCCTCAATCAGGTTGACAGGCTTATCGATTGGCGTCCGATCAGGACGCTGATCAACAAGAAATACACCAAGCGACAAAATGCCATCGGCGCCCCGGCTTATGACGTGATTCTCTTATTCAAGATGTTGCTTTTGGAGACATGGTACAACCTCAGTGATTGTGCTTTGGAGGAGCGCATCAATGATTCAATCACCTTTTCCCGATTCTTGGGGCTGAAGATGGAAGAGGTTTCTCCCGACCACAGTACCATCAGTCGATTTCGTTCGGCACTGACAGAGTTGGGTCTCATGGACAAACTATTGGCGCAGTTTAACAAACAACTTTCCCGCCATCACATTTCGGTCAGGGAAGGGGTGCTTGTCGATGCAAGCCTTGTGGAGACGCCGCATAAACCCAACGGAAGCATTACGATTGAAGTCGCAGACGACAGAGAAGACAATCGGAGCGAGGAGGAAAAAGAGGCAGAGGAGGATTATCAAAAACAGGTTGTCCGTCAGCGTAAAGGGACGGATGAAGAAGCCCGTTGGGTTTACAAACAAAAGCGTTATCACTACGGATACAAAAAGCATTGTCTGACCAATGTTCAAGGCATTGTTCAAAAGGTGATAACGACTGCAGCGAACCGCAGTGACACGAAGGAGTTTATTGCGCTATTGCAGGGTGCAAACATACCTCAAGGCTCAGCCGTCTTGGCGGACAAAGGATATGCTTGCGGGGAAAATCGTTCCTACCTGCAAACCCATCACCTTCAAGACGGCATCATGCACAAGGCACAACGCAACAGGGCATTGACCGAGGAAGAGAAGCAACGAAACAAAGCAATCAGTCGGATACGGAGCACCATCGAACGCACCTTTGGCAGTATTCGCCGGTGGTTTCATGGCGGACGATGTCGATACCGGGGACTTGCCAAGACCCATACTCAAAACATTCTTGAAAGCATCGCCTTTAATTTATACAGAACCCCGGGGATAATTATGTCCTCATTTGTAGGA","10.20","14.72","41742","MAYQSKNTDEHVTFADALLSKRYRKAQNDFLNQVDRLIDWRPIRTLINKKYTKRQNAIGAPAYDVILLFKMLLLETWYNLSDCALEERINDSITFSRFLGLKMEEVSPDHSTISRFRSALTELGLMDKLLAQFNKQLSRHHISVREGVLVDASLVETPHKPNGSITIEVADDREDNRSEEEKEAEEDYQKQVVRQRKGTDEEARWVYKQKRYHYGYKKHCLTNVQGIVQKVITTAANRSDTKEFIALLQGANIPQGSAVLADKGYACGENRSYLQTHHLQDGIMHKAQRNRALTEEEKQRNKAISRIRSTIERTFGSIRRWFHGGRCRYRGLAKTHTQNILESIAFNLYRTPGIIMSSFVG","1532427 1533509","Member of the IS5 family of elements. A full-length ISPg1 element.TIGR ID: PG1448","ISPG1 transposase (IS1106-like transposase)","Cytoplasm","PG1422 is equivalent to the previously sequenced AJ130872 and AB015879 in GenBANK. Residues 31-350 are 34% similar to the IS1106 transposase of N. meningitidis (AE002488). Residues 1-156 and 282-361 conform to the previously sequenced IS1126 element of gingivalis (AB019363).","
InterPro
IPR002559
Domain
Transposase, IS4-like
PF01609\"[147-348]TTransposase_11


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 157-302 are 87% similar to a (TRANSPOSASE PLASMID PROTEIN ELEMENT) protein domain (PD004652) which is seen in Q9ZA61_PORGI.Residues 12-109 are identical to a (TRANSPOSASE PROTEIN INSERTION ELEMENT) protein domain (PD007264) which is seen in Q9ZAD0_PORGI.Residues 303-361 are identical to a (TRANSPOSASE ORF7 INSERTION SEQUENCE IS1126-LIKE GENE) protein domain (PD187845) which is seen in Q9ZA61_PORGI.Residues 110-156 are identical to a (TRANSPOSASE ORF7 INSERTION SEQUENCE IS1126-LIKE GENE) protein domain (PD187846) which is seen in Q9ZA61_PORGI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Fri Feb 16 11:09:00 MST 2001","Mon Feb 12 11:33:51 MST 2001","Thu Dec 21 16:13:41 MST 2000","Thu Dec 21 16:03:25 MST 2000","","Mon Feb 12 11:33:51 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1267 is virtually identical to PG1662, PG0169, PG1050, PG1062, PG0740, PG0918, PG1422, PG0420, PG0499, and PG1099.Partial similarities exist to PG0732, PG0842, PG1607, PG0731, PG0884, PG1184, PG1087, PG0763, PG1755, PG0686, PG0756, PG1798, PG1230, PG1919, PG0044, PG0689, PG1215, PG1665, PG0839, PG1895, PG0883, PG11231, PG0730, PG1159 and PG1608. ","Fri Feb 16 11:09:00 MST 2001","","No significant hits to the PDB database (E-value < E-10).","","","Residues 147 to 348 (E-value = 2.2e-40) place PG1267 in the Transposase_11 family which is described as Transposase DDE domain (PF01609)","","34541119","","Hanley,S.A., Aduse-Opoku,J. and Curtis,M.A.A 55-kilodalton immunodominant antigen of Porphyromonas gingivalisW50 has arisen via horizontal gene transferInfect. Immun. 67 (3), 1157-1171 (1999)Maley,J. and Roberts,I.S.Characterisation of IS1126 from Porphyromonas gingivalis W83: a new member of the IS4 family of insertion sequence elementsMicrobiol. Lett. 123 (1-2), 219-224 (1994)Shibata,Y., Hayakawa,M., Takiguchi,H., Shiroza,T. and Abiko,Y.Determination and characterization of the hemagglutinin-associatedshort motifs found in Porphyromonas gingivalis multiple geneproducts. J. Biol. Chem. 274 (8), 5012-5020 (1999)","Knight,A.I., Ni,H., Cartwright,K.A. and McFadden,J.J.Identification and characterization of a novel insertion sequence,IS1106, downstream of the porA gene in B15 Neisseria meningitidis.Mol. Microbiol. 6 (11), 1565-1573 (1992)","Mon Feb 12 11:33:51 MST 2001","Mon Feb 12 11:33:51 MST 2001","1","","12","PG1448" "PG1267.1","1534355","1533678","678","TTGAAGTTACAATTTATCAGTCAATATGATTCTAAGTTAAGATATATATGTATGATTGAATTAGAAAACATCAAAGAAAGGAAGAGAAGACTTGCTTTTGAAAAAGCTCACGAGATTAGGAAGTTTGAAATTGAACTTTATTGGAAACGAACTACTTATTTTTGGGCATTTATAGCCTTTTCCTTTGGAGCGTATATTGCTATTGTATCTTCCGAAAGCAAAGAGTTTACCAATAGAGAAAACTACGCTTTCGTTATAACATGTATTGGCTTTATCTTTTCTCTAAGTTGGTATCTCGTAAATAGAGCCAGCAAGCATTGGCAAACCAATTGGGAGGTAATTATAGATGATTTAGAAGATGAATTCACAGGAGATTTGATGAAAAGACATATAAAGAATAATAACAAATGGTATGAATTGACATTATCTTATAGATATTCTGTTTCAAGGATCAACCAGATTGTAAGCCTCTTTATTACCATTGTATGGGTTATCTTAATGTGTTTTTCTGGTTATCAAATTCTCAGTATTTCCACATTCTCTTTATCAGGAAACTGGATGTTTCCTATATTCTTTATTGTCACAATCGCTTTCTTTGTTATTCTTGTAAAATGGGGAAAGTCTGAAAAGCCAAAGGAAAAGGTTACTCTTAATCGAAAATCGTCCAAAGAATGTTGT","","","27131","LKLQFISQYDSKLRYICMIELENIKERKRRLAFEKAHEIRKFEIELYWKRTTYFWAFIAFSFGAYIAIVSSESKEFTNRENYAFVITCIGFIFSLSWYLVNRASKHWQTNWEVIIDDLEDEFTGDLMKRHIKNNNKWYELTLSYRYSVSRINQIVSLFITIVWVILMCFSGYQILSISTFSLSGNWMFPIFFIVTIAFFVILVKWGKSEKPKEKVTLNRKSSKECC","","TIGR ID: PG1449","conserved hypothetical protein","Inner membrane, Cytoplasm","One significant hit in gapped BLAST; e.g. residues 8-170 are 42% similar to gb|AAF96387.1| hypothetical protein of Vibrio cholerae.","
noIPR
unintegrated
unintegrated
tmhmm\"[51-71]?\"[81-101]?\"[154-176]?\"[186-206]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Tue Mar 6 14:22:36 MST 2001","Tue Mar 6 14:22:36 MST 2001","Tue Mar 6 14:22:36 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","PG1267.1 is identical to PG0739.1, a conserved hypothetical protein.","Tue Mar 6 14:22:36 MST 2001","Tue Mar 6 14:22:36 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Mar 6 14:22:36 MST 2001","34541120","","","","","","1","","12","PG1449" "PG1268","1534707","1534396","312","ATGGAGAGAAAAATTTCAGATGAAGAATGTCCAGTAAGAAAATCAATGCAGATTTTTGCCGGTAAATGGACATTGCTTATTATCTTTCAAATCAACCGCAGGATAATCCGTTACGGAGAACTCAAACGTGCCATTCCCGGCATTAGCGAGAAAATGCTTATCGATGAATTAAAATTCCTGTGCGGTAAAGGACTAATTAAGAAGAAACAATATCCCGAAGTTCCTCCCAGAGTGGAGTACTCCCTTACGCCCTTGGGTGAGAAAGTGTTGCCGATTATCGACGAGATAGCCAAGTTCGGTATGGAGAATTTA","10.00","4.90","12075","MERKISDEECPVRKSMQIFAGKWTLLIIFQINRRIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPLGEKVLPIIDEIAKFGMENL","1534707 1534396","TIGR ID: PG1450","conserved hypothetical protein (possible transcriptional regulator)","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 1-102 are 45% similar to pir||T44625 hypothetical protein of Butyrivibrio fibrisolvens, residues 12-100 are 40% similar to dbj|BAB04728.1| unknown conserved protein of Bacillus halodurans, residues 8-101 are 40% similar to pir||G69790 conserved hypothetical protein of Bacillus subtilis.","
InterPro
IPR002577
Domain
Helix-turn-helix, HxlR type
PD004032\"[37-74]TDUF24
PF01638\"[18-104]TDUF24
PS51118\"[10-104]THTH_HXLR
noIPR
unintegrated
unintegrated
SSF46785\"[7-104]TSSF46785


","BeTs to 5 clades of COG1733COG name: Predicted transcriptional regulatorsFunctional Class: KThe phylogenetic pattern of COG1733 is Amt----ceBR----------Number of proteins in this genome belonging to this COG is 2","***** PF01638 (Protein of unknown function) with a combined E-value of 1.6e-25. PF01638A 33-59 PF01638B 60-99","Residues 18-102 are 47% similar to a (PROTEIN INTERGENIC REGION CSPC-NAP) protein domain (PD004032) which is seen in P70885_BUTFI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Mar 6 14:35:14 MST 2001","Tue Mar 6 14:35:14 MST 2001","Tue Mar 6 14:35:14 MST 2001","Tue Mar 6 14:35:14 MST 2001","Tue Mar 6 14:35:14 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1268 is identical to PG0739, a conserved hypothetical protein (possible transcriptional regulator).","Tue Mar 6 14:35:14 MST 2001","Tue Mar 6 14:35:14 MST 2001","-100% similar to PDB:2FSW Crystal Structure of the Putative Transcriptional Regualator, MarR family from Porphyromonas gingivalis W83 (E_value = 1.6E_55);-58% similar to PDB:1YYV Putative transcriptional regulator ytfH from Salmonella typhimurium (E_value = 6.0E_15);-61% similar to PDB:1Z7U Crystal Structure of the Putitive Transcriptional Regulator of MarR Family from Enterococcus faecalis V583 (E_value = 3.7E_12);-58% similar to PDB:2HZT Crystal Structure of a putative HTH-type transcriptional regulator ytcD (E_value = 4.8E_12);","","","Residues 18 to 104 (E-value = 2.7e-27) place PG1268 in the DUF24 family which is described as Transcriptional regulator (PF01638)","Tue Mar 6 14:35:14 MST 2001","34541121","","","","","","1","","12","PG1450" "PG1269","1534840","1535244","405","ATGGAAAAGAAAATCGAAAAAGTTCGTCAATTTTACACCGCTTTGGCACAGGGTGATTTTGAAACAGTGGGAGCTTTGCTCTCTGATGATTTGGTATGGCATCAGCCGGGACAAGGCGCTTTGTCTGGTACTTACAATGGCAAACAAAATGTCTTTGCCCATTTGGAAAGAATGGCTCAACTAAGTAATGGTACTTTCGCCATTGATCAAGTGGATTATGTTACAGACAATGGCAACTTGGTTGCAGCAGCAATTGCATTTGCGGTATCAGCCAACGGACATTCAATAGAAATGAAAGGAGTAGATCTCTTTAACTTTGAGAATGGTTTTATAAAGAAAGTCTGGCTCTTCTCTGAGCGAATTGAAGAGGAAGACCGTTTTTGGACGGCATTGGCACAAGGTTGT","4.70","-6.33","14994","MEKKIEKVRQFYTALAQGDFETVGALLSDDLVWHQPGQGALSGTYNGKQNVFAHLERMAQLSNGTFAIDQVDYVTDNGNLVAAAIAFAVSANGHSIEMKGVDLFNFENGFIKKVWLFSERIEEEDRFWTALAQGC","1534840 1535244","TIGR ID: PG1451","hypothetical protein","Cytoplasm","No significant hits with an E value less than e-04 using gapped BLAST.","
InterPro
IPR009959
Family
Protein of unknown function DUF1486
PF07366\"[6-134]TSnoaL
noIPR
unintegrated
unintegrated
G3DSA:3.10.450.50\"[2-129]TG3DSA:3.10.450.50
SSF54427\"[1-129]TSSF54427


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Feb 13 17:50:03 MST 2001","Mon Jun 4 14:53:52 MDT 2001","Tue Feb 13 17:50:03 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1-127 of PG1269 are 98% similar to PG0738, a hypothetical protein.","Mon Jun 4 14:53:52 MDT 2001","Tue Mar 6 14:50:23 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jun 4 14:53:52 MDT 2001","34541122","","","","","","1","","12","PG1451" "PG1270","1535735","1535376","360","ATGAAAAGAGGAACTATAACCATAGATGGGAAGGGAAATGTACATATCCCGTCAACTCCTGTTTGGATGTCGGCTTGTGAGATAGCCGACCTGTTCGGAGCCTTCTCTGGCAAGGTGAGCrTGCAAATCAAAACGATATTCAAGGAGGGTCTCCTGATGGAAACGGAAGCAATGAGAACAATCCAATCTGGACAAGGATTTATTGATTTGTATGGTATTGAAATGATAACGATGCTATCGTTTCGTATTGCCACGCCACAGGCAAAGACTTTGCGGAGGTGGATAATCGACAGACTTTCGGGAAAGAACTCTTCATCTTCTCCTTTGATTGTTTGCTATACCTTGGGCAAGCGATATAAT","10.40","6.13","29490","MKRGTITIDGKGNVHIPSTPVWMSACEIADLFGAFSGKVSXQIKTIFKEGLLMETEAMRTIQSGQGFIDLYGIEMITMLSFRIATPQAKTLRRWIIDRLSGKNSSSSPLIVCYTLGKRYN","1535735 1535376","TIGR ID: PG1452","hypothetical protein","Cytoplasm","No significant hits in gapped BLAST.","
noIPR
unintegrated
unintegrated
PS51257\"[1-26]TPROKAR_LIPOPROTEIN


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","Tue Feb 6 13:38:08 MST 2001","Tue Feb 6 13:38:08 MST 2001","","","Fri Feb 9 12:26:18 MST 2001","Fri Feb 9 12:26:18 MST 2001","Tue Feb 6 13:38:08 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","PG1270 is similar to PG0737, a hypothetical protein. Residues 1-119 are 99% similar to PG0737. Weaker similarities are seen to PG0993, a hypothetical protein. Residues 3-103 are 40% similar to PG0993.","Mon Jun 4 14:58:19 MDT 2001","Wed Mar 7 11:31:25 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jun 4 14:58:19 MDT 2001","34541123","","","","","","1","","12","PG1452" "PG1271","1536944","1535745","1200","ATGCGTAGCACATTTTCATTATTACTCTATATCAATCGTAACAAGGTACGTGTGGACGGTACGACTTCTGTCCTTTGCCGAATCTCCATTGACGGAAAGAACACCGTCATTACCACGGGCATTTCCTGCAAACCCCAACAATGGAACGCCAAAAATGCAGAGACCTCAGATGCACGGACAAACAACCGTCTGAAGAAATTCCGCAGTGATGCGGAACGGCTTTATGAGGATCTCCTTAAGAGATATGGTGTTGTCAGTGCGGAACTGTTGAAAAATGAAATTGCGGGACATGTCGTAGTTCCCATTCATTTACTCCAGATGGGAGAAAGGGAGCGAGAACGTCTTGCAGTAAGAGCTAACGAAATAGGCTCAAACTCCACATACAGAAGTTCAAGATATTACCAAAGTTATATTCGAGAGTTTTTGGAGTCAAAAGGCATGAGCGACATTGCTTTCTTGGACATCACCGAGGAGTTCGGACGGGAATACAAGGTTTATCTGAAACGATACAAAAACTTCGGAGCATCGCAGACCAACCATTGCCTTTGTTGGCTGAACCGATTGGTTTACCTTGCCGTTGACCATGAGATTATCCGAGCCAATCCATTAGAAGAAGTCGAATATGAGAAGAAGCCCCCTGCCAAGCGTATGCACATCAGCAAAGCGGAACTGAAACAGTTGTTGGAACTTAAATTGCCACAGAACGACCCGTTGAAAGAACTGGCTCGACGGACTTTCATCTTCTCCTGTTTTACGGGGCTTGCCTATGTTGATAyGCAATTGCTATATCCGCACCACATAGGAAAGACGGCCGAGGGACGGCGTTATATACGGATTAACCGCAGGAAGACGAAAGTAGAATCATTCATTCCCCTGCATCCGATAGCCGAGCAGATTATCAATCTATACAACACGACAGATGACACACAACCCGTCTTCCCTTTGCCAAGCAGGGATATGATGTGGTTTGAAATACATGAACTGGGTGTCATCATCGGACGCAAGGAGAACCTGTCCTACCATCAAGCAAGGCATAGCTTCGGATCGTTCTTAATCTCGGAAGGTATATGTACGGAAAGCATTGCCAAGATGATGGGACATGCTTCCATTACCAGCACGCAGAACTATGCGAAGATTTCGGAGAAGAAAATCTCAGAGGATATGGACAGGCTGATGGAAAGACGAAAGAACAATGAATAC","10.00","15.64","98304","MRSTFSLLLYINRNKVRVDGTTSVLCRISIDGKNTVITTGISCKPQQWNAKNAETSDARTNNRLKKFRSDAERLYEDLLKRYGVVSAELLKNEIAGHVVVPIHLLQMGERERERLAVRANEIGSNSTYRSSRYYQSYIREFLESKGMSDIAFLDITEEFGREYKVYLKRYKNFGASQTNHCLCWLNRLVYLAVDHEIIRANPLEEVEYEKKPPAKRMHISKAELKQLLELKLPQNDPLKELARRTFIFSCFTGLAYVDXQLLYPHHIGKTAEGRRYIRINRRKTKVESFIPLHPIAEQIINLYNTTDDTQPVFPLPSRDMMWFEIHELGVIIGRKENLSYHQARHSFGSFLISEGICTESIAKMMGHASITSTQNYAKISEKKISEDMDRLMERRKNNEY","1536944 1535745","TIGR ID: PG1453","Tn5520-like integrase (transfer factor)","Cytoplasm","A few significant hits and numerous weak hits in gapped BLAST; e.g. residues 1-399 are 27% similar to gb|AAC80279.1| transposase of Bacteroides fragilis, residues 239-396 are 27% similar to gb|AAB53787.2| integrase of Bacteroides fragilis, residues 146-383 are 22% similar to gb|AAG03003.1| putative integrase of Salmonella enterica serovar Typhimurium.This sequence is similar to BT4021.","
InterPro
IPR002104
Domain
Integrase, catalytic core, phage
PF00589\"[341-386]TPhage_integrase
InterPro
IPR013762
Domain
Integrase-like, catalytic core, phage
G3DSA:1.10.443.10\"[218-389]Tno description


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 1-317 are 25% similar to a (TRANSPOSASE) protein domain (PD214991) which is seen in Q9ZI85_BACFR.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","Tue Feb 6 13:39:00 MST 2001","Tue Feb 6 13:39:00 MST 2001","","","Fri Feb 9 13:14:59 MST 2001","Mon Jan 5 09:46:18 2004","Tue Feb 6 13:39:00 MST 2001","","Tue Mar 6 15:06:19 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1271 is essentially identical to PG0736, a Tn5520-like integrase (transfer factor). Weaker similarities are seen to PG1272 (Tn5520-like integrase (transfer factor)), PG0735 (Tn5520-like integrase (transfer factor)), PG0994 (transposase), PG1258 (transposase), PG0749 (possible transposase), PG0784, PG0750 (integrase).","Tue Mar 6 15:06:19 MST 2001","Tue Mar 6 15:06:19 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 219 to 386 (E-value = 3.2e-05) place PG1271 in the Phage_integrase family which is described as Phage integrase family (PF00589)","Tue Mar 6 15:06:19 MST 2001","34541124","","","","","","1","","12","PG1453" "PG1272","1538199","1536973","1227","ATGAAGATAGAGAAATTCAAGGTGTTGCTCTACCTGAAAAAGAGCAGACCCGACAAGTCGGGCAAAGCCCCGATCATGGGACGCATTACCGTCAATCGTTCGATGGTGCAGTTCAGTTGCAAACTCTCCTGTACTCCTGACTTATGGAATCCCCGTGAGAGTCGATTGAACGGTAAAAGCAATGAAGCAGTAGAGGTCAATGCCAAATTAGACAAGTTGTTGCTTTCCATTCATGCTGCATTCGACACCTTGGTGGAACGCAAGGCAGACTTTGATGCCGAAGCGGTCAAGAATCTGTTTCAGGGAAGTCTCGAAACACAGATGACCTTGCTGGCAATGACGGACATCGTCTGCGAGGAACTCCGTAAACGTATCGGGATAGACCGGGCAAAAGGAACATACCCCGCCTATTTCTACACCCGAAGAACCTTGGCGGAGTTCATTCAAAAGAAATTCCACTCCAAGGACATTGCCTTCGGTCAGCTGACCGAACAGTTCATTCACGACTATCAGTTTTTTGTCGTGGACGACAAAGGGCTTACCATAGAGACCAGCCGACACTACCTGGCCATCATCAAAAAAGTATGCCGTAAAGCCTACAAGGAAGGCTATGCCGATAAATGTTTTTTCGCTCATTTCAGTCTCCCCAAGCAAGAGGAGAAGACACCGAAAGCCCTAAGTCGGGAATCCTTTGAGAAAATCCGTGACTTGGTCATTCCCGAACATCGTAGCTCTCATATCTTGGCAAGAGATCTCTTCCTCTTTGCCTGCTATACGGGAACTTCCTATGCTGATGCGGTATCGGTTACACGAGACAATCTCTTCACCGATGATGAAGGAAGTCTATGGCTTAAATACCGTCGCAAGAAAAACGAACTTCAAGCCTGTGTCAAACTCCTGCCCGAAGCCCTTGAATTGATAGAGAAATACAACGACGATACCCGTCCGACACTCTTTCCAATGCTGTACCACCCCAATCTACGTCGCCTGATGAAATGCCTTGCGGTTCTCGCCGACATAAAGGAAGACCTGACCTACCATGCCGGAAGGCATTCCTTCGCTTCATTGATTACTCTGGAAGCAGGAGTCCCCATAGAAACTATCTGTAAGATGCTGGGACATTCGAACCTGCAAACGACTCAGAGATACGCGAAGGTTACCCCAAAGAAACTCTTCGAGGATATGGACAAATACATCGAAGCGACAAAGGATTTGAAACTCATATTA","9.60","15.25","47243","MKIEKFKVLLYLKKSRPDKSGKAPIMGRITVNRSMVQFSCKLSCTPDLWNPRESRLNGKSNEAVEVNAKLDKLLLSIHAAFDTLVERKADFDAEAVKNLFQGSLETQMTLLAMTDIVCEELRKRIGIDRAKGTYPAYFYTRRTLAEFIQKKFHSKDIAFGQLTEQFIHDYQFFVVDDKGLTIETSRHYLAIIKKVCRKAYKEGYADKCFFAHFSLPKQEEKTPKALSRESFEKIRDLVIPEHRSSHILARDLFLFACYTGTSYADAVSVTRDNLFTDDEGSLWLKYRRKKNELQACVKLLPEALELIEKYNDDTRPTLFPMLYHPNLRRLMKCLAVLADIKEDLTYHAGRHSFASLITLEAGVPIETICKMLGHSNLQTTQRYAKVTPKKLFEDMDKYIEATKDLKLIL","1538220 1536973","TIGR ID: PG1454","Tn5520-like integrase (transfer factor)","Cytoplasm","One strong hit and numerous weak hits in gapped BLAST; e.g. residues 6-406 are 32% similar to gb|AAC80279.1| transposase of Bacteroides fragilis, residues 133-312 are 28% similar to gb|AAG12447.1| integrase-like protein of Bacteroides fragilis, residues 24-398 are 20% similar to gb|AAF74726.1|AF251288_3 integrase of Bacteroides fragilis.","
InterPro
IPR002104
Domain
Integrase, catalytic core, phage
PF00589\"[283-393]TPhage_integrase
InterPro
IPR010998
Domain
Integrase, Lamba-type, N-terminal
SSF47823\"[113-227]TL_intgrse_like_N
InterPro
IPR011010
Domain
DNA breaking-rejoining enzyme, catalytic core
SSF56349\"[219-400]TDNA_brk_join_enz
InterPro
IPR013762
Domain
Integrase-like, catalytic core, phage
G3DSA:1.10.443.10\"[224-396]TPhage_intgr_like


","BeTs to 12 clades of COG0582COG name: IntegraseFunctional Class: LThe phylogenetic pattern of COG0582 is aMtK-qvcEBRHUJ---LINXNumber of proteins in this genome belonging to this COG is 8","***** PF00589 (\"Phage\" integrase family) with a combined E-value of 9.4e-08. PF00589B 346-355 PF00589C 372-383","Residues 329-391 are 44% similar to a (INTEGRASE DNA PROTEIN RECOMBINATION INTEGRATION PLASMID) protein domain (PD000437) which is seen in Q9ZI85_BACFR.Residues 6-310 are 31% similar to a (TRANSPOSASE) protein domain (PD214991) which is seen in Q9ZI85_BACFR.","","Thu Jun 14 11:45:10 MDT 2001","","Thu Jun 14 11:45:10 MDT 2001","Thu Jun 14 11:45:10 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:45:10 MDT 2001","Thu Jun 14 11:45:10 MDT 2001","","","Fri Feb 9 15:41:55 MST 2001","Mon Jun 25 14:32:05 MDT 2001","Fri Feb 9 15:41:26 MST 2001","Mon Jan 5 09:48:07 2004","Mon Jun 25 14:32:05 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1272 is identical to residues 8-416 of PG0735 (length = 416 res), a Tn5520-like integrase (transfer factor). Weaker similarities are seen to PG0994, PG1271, PG0736 (Tn5520-like integrase (transfer factor)), PG0749 (possible transposase), PG1258, PG0757, PG0750 (integrase), PG0784, PG1510 (integrase/recombinase (XerD-related)).This sequence is similar to BT4022.","Mon Jan 5 09:48:07 2004","Tue Mar 6 15:13:32 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 226 to 393 (E-value = 1.3e-08) place PG1272 in the Phage_integrase family which is described as Phage integrase family (PF00589)","Mon Jun 25 14:32:05 MDT 2001","34541125","","","","","","1","","12","PG1454" "PG1273","1538793","1539257","465","GTGATATTGGATTATCATTTGGCCGAACTCTACGGTGTGCAGACAAAAGTGCTCAAACAGGCCGTCAGGAGAAATTTGCAGCGCTTCCCGGAAGATTTTATGTTCGAACTTACCGAAAACGAATGGACGGAACTGGTCACAATTTGTGACCGGTTACCCGAAACCCTCAAACACAGTTCCGTTGCTCCGATGGCTTTTACCGAGCAGGGAGTAGCCATGCTATCATCGGTGCTGCGCAGTCCGACAGCAATAGAAGTGAACATTGCCATCATGCGGACTTTCGTTGCCATGCGTCGGATGATTGCCGGTTATGAAGAACTCAAAAAGCGTATCGAAGACCTTGAAGTAAGCTGTAATGTGCAGTTCAGTGAGTTGTACACGGCCCTGACGGAGCTGTTGGAGCAAAAAGAAAAAGCGGAAAAGCCTCGTAATCCCGTCGGCTTTATCATTCCCAAGCAAGAGAAA","5.50","-2.61","17905","VILDYHLAELYGVQTKVLKQAVRRNLQRFPEDFMFELTENEWTELVTICDRLPETLKHSSVAPMAFTEQGVAMLSSVLRSPTAIEVNIAIMRTFVAMRRMIAGYEELKKRIEDLEVSCNVQFSELYTALTELLEQKEKAEKPRNPVGFIIPKQEK","1538727 1539257 [Shorter 1637 154 99]","TIGR ID: PG1457","conserved hypothetical protein","Cytoplasm","One weak signficant hit using gapped BLAST. Residues 1-99 are 37% similar to (AE005997) hypothetical protein of Caulobacter crescentus.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 11:45:30 MDT 2001","","Thu Jun 14 11:45:30 MDT 2001","Thu Jun 14 11:45:30 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:45:30 MDT 2001","Thu Jun 14 11:45:30 MDT 2001","","","Mon Jun 25 14:34:46 MDT 2001","Mon Jun 25 14:34:46 MDT 2001","Tue Mar 6 15:16:03 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 6 15:16:03 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jun 25 14:34:46 MDT 2001","34541126","","","","","","1","","","PG1457" "PG1275","1539287","1539742","456","ATGAAACAGGAAAAGAGAACCTTGTCGTATTACCGACTCAGACTGGAAGTTTATCTGAAAGACTACCATCCGCAACTGCTCGGTGACGAAACGTTTATCCGAGAACGTTCCGAAGCTGCTGCAAAAACGTACGAAGAAGCCTTCCTGCAAGACAATCCCATCGGCATAGCCGAAAGCATGGCCATGGAAGTATTGCTTAGAGGACTGCATTTTTCGCCGTATCAGTTTATCAAACAAATCATCGATAACGAATTTGCAAACGAAGTTCCCGCCGAACTGTCGGGGAAACTCTCTTTGCTTCTGTTGGAGCACAAAGAAGTCAAAGATACCTTCGACCGTTACCATCCGGGAGACGACTTCGATGAAAAGCCGGAATATGACCGGCTCTATACCGAACTGACCGGAACGATCGCTACGGTCATGGAAGAGCATGATTTGCTAAAGGACATTCTCCGT","4.70","-10.78","17889","MKQEKRTLSYYRLRLEVYLKDYHPQLLGDETFIRERSEAAAKTYEEAFLQDNPIGIAESMAMEVLLRGLHFSPYQFIKQIIDNEFANEVPAELSGKLSLLLLEHKEVKDTFDRYHPGDDFDEKPEYDRLYTELTGTIATVMEEHDLLKDILR","1539287 1539742 [Shorter 1637 432 99]","TIGR ID: PG1458","conserved hypothetical protein","Cytoplasm","No significant hits with an E value less than e-04 using gapped BLAST.","
InterPro
IPR015082
Family
Domain of unknown function DUF1896
PF08989\"[1-146]TDUF1896


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Sat Jan 22 17:20:00 2005","Mon Jun 4 15:09:16 MDT 2001","Wed Jan 10 11:14:27 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","PG1275 is similar to PG0734. Residues 4-146 are 43% similar to PG0734, a hypothetical protein.","Mon Jun 4 15:09:16 MDT 2001","Tue Mar 6 15:19:34 MST 2001","-60% similar to PDB:2APL Crystal structure of protein PG0816 from Porphyromonas gingivalis (E_value = 6.4E_27);-63% similar to PDB:1EP0 HIGH RESOLUTION CRYSTAL STRUCTURE OF DTDP-6-DEOXY-D-XYLO-4-HEXULOSE 3,5-EPIMERASE FROM METHANOBACTERIUM THERMOAUTOTROPHICUM (E_value = 6.4E_27);-63% similar to PDB:1EPZ CRYSTAL STRUCTURE OF DTDP-6-DEOXY-D-XYLO-4-HEXULOASE 3,5-EPIMERASE FROM METHANOBACTERIUM THERMOAUTOTROPHICUM WITH BOUND LIGAND. (E_value = 6.4E_27);-54% similar to PDB:1CIV CHLOROPLAST NADP-DEPENDENT MALATE DEHYDROGENASE FROM FLAVERIA BIDENTIS (E_value = 6.4E_27);","","","No significant hits to the Pfam 11.0 database","Mon Jun 4 15:09:16 MDT 2001","34541127","","","","","","1","","","PG1458" "PG1276","1540101","1539793","309","ATGCTGACATTTTTTTTGCGTCTAAAGCTCGGAGTGTGCCGATTTCGTTTCGTGGGCTGTTCAAGGTGGCCGGAGGGTATATGTCAAGGCTTCCCGAAAAAATACGACTTGGAACGAAGTGGAAATGTGGAGATTTTTTCAGGCGAACCCGAAAGGGCTTCAGGCCTTGACACTTTACCCGAAGGCCGGTTTCCTTCGCCCAAAGAAAGGAATCGGCACTCCGGGATCGAAGACAACAGGTGGAAGATTTGGAGATGGAAAAGATACTCCCGAAACTCTCCGGAAAAGGAAAAGGGACAGCCCCGTGTG","10.80","9.09","12200","MLTFFLRLKLGVCRFRFVGCSRWPEGICQGFPKKYDLERSGNVEIFSGEPERASGLDTLPEGRFPSPKERNRHSGIEDNRWKIWRWKRYSRNSPEKEKGQPRV","1540101 1539793","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm, Extracellular","No significant hit found in gapped BLAST with E value less than e-04.","
noIPR
unintegrated
unintegrated
signalp\"[1-20]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","","Tue Mar 6 15:21:18 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 6 15:21:18 MST 2001","-82% similar to PDB:2JM3 Solution structure of the THAP domain from C. elegans C-terminal binding protein (CtBP) (E_value = );-50% similar to PDB:1RSC STRUCTURE OF AN EFFECTOR INDUCED INACTIVATED STATE OF RIBULOSE BISPHOSPHATE CARBOXYLASE(SLASH)OXYGENASE: THE BINARY COMPLEX BETWEEN ENZYME AND XYLULOSE BISPHOSPHATE (E_value = );","","","No significant hits to the Pfam 11.0 database","Tue Mar 6 15:21:18 MST 2001","","","","","","","1","","","" "PG1277","1540103","1540459","357","ATGGAACAAGAAAGATTAAATCACTCAATGGATCGCAGGAAACGAAATAACTCCTCCTCGCATTACCGCATAAAAACGGGTTCGGACGTGTCCATTCTTATCGTGGCAAGCGAATACGGAAATCGTGCCTGTGAATTGACCGAACTGCTGTTGTGCCATGTCGGATTTAAGACCGTGCCTGTGGTTTCGGTGAATAAGGGAAACGGATATGTACGCCTGTACAGTTGGGAAAATTATGTCGCAGAAAGCTGCTATGACAAAGATGCGGAAAGCATCAGCCTCTCTCAGGACGAATACGACGATGATGCACTGCTGAATGCAGCCATAGAGAAACATTTTCTAACCCTGACAAAACAA","5.70","-3.19","13578","MEQERLNHSMDRRKRNNSSSHYRIKTGSDVSILIVASEYGNRACELTELLLCHVGFKTVPVVSVNKGNGYVRLYSWENYVAESCYDKDAESISLSQDEYDDDALLNAAIEKHFLTLTKQ","1540103 1540459","TIGR ID: PG1460","hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","","Tue Mar 6 15:28:13 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 6 15:28:13 MST 2001","-46% similar to PDB:1XA6 Crystal Structure of the Human Beta2-Chimaerin (E_value = );-45% similar to PDB:2OSA The Rho-GAP domain of human N-chimaerin (E_value = );","","","No significant hits to the Pfam 11.0 database","Tue Mar 6 15:28:13 MST 2001","34541129","","","","","","1","","","PG1460" "PG1278","1540469","1540987","519","ATGGCAACCCATAATTTCGCTTACGAGAATCGTCTCATCCATGTCGAAGACGAAGACTACGAATCAGGGAATGTTCCCGAACACAAGGAATATGTGCAGGGATGCAACCGCAATTATCCGAGCTATTATCTGGATGAATACCGTGCTTCCTTTCATACGCTTGATATAGTCATTACTTCAGCCTACTATTCGGGTGGGTGTATCGACTACATTCAACATGACAGCTATTTGAACAACATAACTTTTTGCGATGGATATGATGAAGATGCCACCGACACGATTATGCGTGATTTCAAAGCATATCATCCCGATTATGAGAAAGTCAGAGAATTGGCAAGGAAAATAGGAGAAGATTGGAAGAATTATACTGCTTACGATGCTTTACAGGCATATTTATTCGCATTGGAAAAGCCCGAAGCCGATAAGATAATCGACAAAATCAAAACGGATTATGGCTATCGGGAACTCACTAAAACAGGCTCTTTCTGTAATGGAGAGGCTTTATATGAACAAATTGCA","4.50","-14.74","20272","MATHNFAYENRLIHVEDEDYESGNVPEHKEYVQGCNRNYPSYYLDEYRASFHTLDIVITSAYYSGGCIDYIQHDSYLNNITFCDGYDEDATDTIMRDFKAYHPDYEKVRELARKIGEDWKNYTAYDALQAYLFALEKPEADKIIDKIKTDYGYRELTKTGSFCNGEALYEQIA","1540469 1540987","TIGR ID: PG1461","hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","","Tue Mar 6 15:29:20 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 6 15:29:20 MST 2001","-51% similar to PDB:2I6X The structure of a predicted HAD-like family hydrolase from Porphyromonas gingivalis. (E_value = );-48% similar to PDB:1SZQ Crystal Structure of 2-methylcitrate dehydratase (E_value = );-54% similar to PDB:1HME STRUCTURE OF THE HMG BOX MOTIF IN THE B-DOMAIN OF HMG1 (E_value = );-54% similar to PDB:1HMF STRUCTURE OF THE HMG BOX MOTIF IN THE B-DOMAIN OF HMG1 (E_value = );-54% similar to PDB:1HSM THE STRUCTURE OF THE HMG BOX AND ITS INTERACTION WITH DNA (E_value = );","","","No significant hits to the Pfam 11.0 database","Tue Mar 6 15:29:20 MST 2001","34541130","","","","","","1","","","PG1461" "PG1278.1","1541003","1541227","225","ATGAAAACAATCCTTATACGGCTGACGGTAGTAGCTGCTTTCATAATCGGAACGGTCTGTATTTGTTCCATGCTTATCACAGAAGAAGCGATAACGGTACTTACCCTGCTCACCGCCCTGTACTTCGTGCGCTTTCTCGTCCGTACGGCACTCTATGTCTTTTTCACGCTTGTCAGGTGGCTATGTATCATAGCTCTATTGGGATTGCTTTTCTGCTCACTCTTT","0.00","0.00","8476","MKTILIRLTVVAAFIIGTVCICSMLITEEAITVLTLLTALYFVRFLVRTALYVFFTLVRWLCIIALLGLLFCSLF","","TIGR ID: PG1462","hypothetical protein","Inner membrane, Cytoplasm","No significant hits using gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-20]?signal-peptide
tmhmm\"[10-41]?\"[51-71]?transmembrane_regions


","No hit to the COGs database.","","","Mon Jul 9 16:05:41 MDT 2001","Mon Jul 9 16:05:41 MDT 2001","Mon Jul 9 16:05:41 MDT 2001","Mon Jul 9 16:05:41 MDT 2001","Mon Jul 9 16:06:33 MDT 2001","Mon Jul 9 16:05:41 MDT 2001","Mon Jul 9 16:05:41 MDT 2001","Mon Jul 9 16:06:33 MDT 2001","Mon Jul 9 16:06:33 MDT 2001","Mon Jul 9 16:05:41 MDT 2001","Mon Jul 9 16:05:41 MDT 2001","Mon Jul 9 16:18:48 MDT 2001","Mon Jul 9 16:18:14 MDT 2001","Mon Jul 9 16:28:17 MDT 2001","Mon Jul 9 16:05:41 MDT 2001","Mon Jul 9 16:05:41 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 5-74 are 36% similar to PG0733, another hypothetical protein.","Mon Jul 9 16:09:31 MDT 2001","Mon Jul 9 16:05:41 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jul 9 16:05:41 MDT 2001","34541131","","","","","","1","Mon Jul 9 16:05:41 MDT 2001","","PG1462" "PG1279","1541253","1541531","279","ATGAATACATTCGATTTTTATCAGGACAGCAAGGTTACTTGCCGGATGCGAACAAAATTTCAGGTGAAAGCTGAAAATTATGAACAGGCAGTAGCCATTATAAAAACTTGGCAAGGTGAAGACGTGATGAACCATGACGATGAAGAACAGGTCATTTTCGTTGAAGGAGAAACGCTATTGGATACCTCCGAAAATCTTTCTCCCAAAGAAAACGGAGGTCGTCCGACCATAGAGGTCTTCGATGACAAGGGAAAGGAAATCACCAATAATTTGAACCCA","4.30","-8.81","10716","MNTFDFYQDSKVTCRMRTKFQVKAENYEQAVAIIKTWQGEDVMNHDDEEQVIFVEGETLLDTSENLSPKENGGRPTIEVFDDKGKEITNNLNP","1541253 1541531","TIGR ID: PG1463","hypothetical protein","Cytoplasm","No hit found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","","Tue Mar 6 15:30:42 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 6 15:30:42 MST 2001","-64% similar to PDB:2HZP Crystal Structure of Homo Sapiens Kynureninase (E_value = );-54% similar to PDB:1J6O Crystal structure of TatD-related deoxyribonuclease (TM0667) from Thermotoga maritima at 1.8 A resolution (E_value = );-48% similar to PDB:1PLC ACCURACY AND PRECISION IN PROTEIN CRYSTAL STRUCTURE ANALYSIS: RESTRAINED LEAST-SQUARES REFINEMENT OF THE CRYSTAL STRUCTURE OF POPLAR PLASTOCYANIN AT 1.33 ANGSTROMS RESOLUTION (E_value = );-48% similar to PDB:1PNC ACCURACY AND PRECISION IN PROTEIN CRYSTAL STRUCTURE ANALYSIS: TWO INDEPENDENT REFINEMENTS OF THE STRUCTURE OF POPLAR PLASTOCYANIN AT 173K (E_value = );-48% similar to PDB:1PND ACCURACY AND PRECISION IN PROTEIN CRYSTAL STRUCTURE ANALYSIS: TWO INDEPENDENT REFINEMENTS OF THE STRUCTURE OF POPLAR PLASTOCYANIN AT 173K (E_value = );","","","No significant hits to the Pfam 11.0 database","Tue Mar 6 15:30:42 MST 2001","34541132","","","","","","1","","","PG1463" "PG1280","1542125","1542766","642","ATGGATAAGAAACTCAGATTGACAGGGTATGTGGGAGTGGCAGGTAGCCTGCTGATGTATACCGGCGACATGTTGCTGTATTTTACGACACAACCCATTCCCGATCGGGAAAAAGATCTGCTGCTTTCTATGGGCACAGTGCCCTTGGAGCGTCTCATTGCCGGAGGGATAATAGGCCCGTTGGCGGCGGTTCTGTACATCATCGGATTCTACCATTTGTTTCTCAGGGTTAAGAAAGCGCGACGAAAAACAGCCTGCTGGATGCTTGCTTCCCTATCCGTAAGTATAATTGTAGGAGGTGCTTATCATGCCTTCTTCCCGGCTTTCGGCATCGTATCGTCGCAGGGACATCCCGAAATCATCGACCATTTTCTCTCCTATGCCGGCTGGTTGGGCGGTTTTTCTTTTTTCTTAATGGGAATCGGATGGTTGCTCTTTTCTGTATTGGTGCTGCAAAAGCAGACTTCTTTTCCTCGTTGGATAGTTTTCGCAACACCGTTGATCACCATCTGGCTCAATTTCCTTTGGAAAACGCTGCCGCAACCGTTTCTTCTGTTGATAGCGGGCGGATGGAACAATCTGGTGTATACCCTGATTTTTGCCGTATCGCTGATCACATTAAAAAAACAATATCATTCCCGA","10.70","11.13","24050","MDKKLRLTGYVGVAGSLLMYTGDMLLYFTTQPIPDREKDLLLSMGTVPLERLIAGGIIGPLAAVLYIIGFYHLFLRVKKARRKTACWMLASLSVSIIVGGAYHAFFPAFGIVSSQGHPEIIDHFLSYAGWLGGFSFFLMGIGWLLFSVLVLQKQTSFPRWIVFATPLITIWLNFLWKTLPQPFLLLIAGGWNNLVYTLIFAVSLITLKKQYHSR","1542125 1542766 [Shorter 1646 217 78]","TIGR ID: PG1465","hypothetical protein","Inner membrane, Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
noIPR
unintegrated
unintegrated
tmhmm\"[10-30]?\"[53-75]?\"[85-105]?\"[124-146]?\"[156-176]?\"[186-206]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","","Tue Mar 6 15:32:03 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 6 15:32:03 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Mar 6 15:32:03 MST 2001","34541133","","","","","","1","","","PG1465" "PG1281","1542766","1543335","570","ATGACTATGAGTGATTTTTCATTTTTCACCACGTTGCAAGCCGGATGGCTGAACGCATGGATACCTTCGTTCGGCATGGTGCTGATACAGTTTATATATATGGCAATCTTCCGTGAGGGAGGAAAGCGCGCGGTGGATACCTCGTGGTACACGACCAAAGACAAGGCGAACGCCTCTGTCAGTACAATCCTGCAAATTGCCATATTGGTGCTTTCCGTTTTCGTCCCGTTCAAGTTCGGTACGGCATGGTTTCTTGCGGGAATGGTGGTTTACGTGCTTTCGCTGGTGCTCTTTGTCCGGGCTTTTCACAACTATGTGGCAACTCCTGCCGGAAAGACCATCAAAGGAGGAGTCTATCGTTGGTCGCGCAATCCGATGTACTTTTTCTTTTTTACGGGAATGTTCGGCGTTTGTATCGCTTCCGCCTCGTTGTGGATGCTACTCGTCATGATACCCTTCATCATTGCCACACATTTCCTCATACTGGGAGAAGAACGCTATTGTGAGGAGACCTACGGAGAGGAATACCGCGAATACAAGGCCAAGACTCCTCGTTATTTCTTGTTCTTT","10.00","5.37","21912","MTMSDFSFFTTLQAGWLNAWIPSFGMVLIQFIYMAIFREGGKRAVDTSWYTTKDKANASVSTILQIAILVLSVFVPFKFGTAWFLAGMVVYVLSLVLFVRAFHNYVATPAGKTIKGGVYRWSRNPMYFFFFTGMFGVCIASASLWMLLVMIPFIIATHFLILGEERYCEETYGEEYREYKAKTPRYFLFF","1542550 1543335 [Bad Olap 1645 217 21]","TIGR ID: PG1466","conserved hypothetical protein","Inner membrane, Cytoplasm","One very weak hit to a hypothetical protein. Residues 109-174 are 34% similar to (AP003004) from Mesorhizobium loti.","
InterPro
IPR010721
Family
Protein of unknown function DUF1295
PF06966\"[8-183]TDUF1295
noIPR
unintegrated
unintegrated
PTHR12714\"[114-190]TPTHR12714


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 11:45:59 MDT 2001","","Thu Jun 14 11:45:59 MDT 2001","Thu Jun 14 11:45:59 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:45:59 MDT 2001","Thu Jun 14 11:45:59 MDT 2001","","","Mon Jun 25 14:37:45 MDT 2001","Mon Jun 25 14:37:45 MDT 2001","Tue Mar 6 15:32:59 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 6 15:32:59 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jun 25 14:37:45 MDT 2001","34541134","","","","","","1","","","PG1466" "PG1282","1543353","1543961","609","ATGAGACTGTTCAAGAAGTTCATAAGCAATTGCCGCAGACCTGAAAACAATTTCTGGGGAAAAATGATGCTTGCGGGGATGAACTACGGCCATAATAAAATGGCTCTCTGGTGCATCGACGAATGTATCCGACCGTCCGGTGAGGAGGATATTCTCGACATCGGTTGCGGCGGCGGGCAAAACATCGCCAACTTTCTGACAAGGACGAAAGGAAAAGTATGCGGAGCGGACTACTCGGCGCAGAGCGTGGCAAAGTCCGTTGCCAGGAACAGGAAAGCTGTCCGAGACGGCCGGGCGGAAATCATGAAGGCCTTGGTCTCATCCCTTCCTTATGAATCTGCGACTTTCGATCTTGCAACAGCTTTTGAAACCATCTATTTCTGGCCGGACATCGTCGAGGATTTCAAAGAAGTAAGGCGTGTACTCAAGCCGGGCGGCAGATTTGCCGTCTGCAACGAAATGGCTTCCGAGGCAGGAAACGAGCGATGGATTTCACTCTTGGATATGAAAATTTATACCCCGGACGAAATCGTTGAGAACATGACGAAAGCAGGGTTTACACAGACCTCCGTATTTACGCAGGGCAATCGTATCTGTGTTATCGGGCGA","8.30","3.91","22821","MRLFKKFISNCRRPENNFWGKMMLAGMNYGHNKMALWCIDECIRPSGEEDILDIGCGGGQNIANFLTRTKGKVCGADYSAQSVAKSVARNRKAVRDGRAEIMKALVSSLPYESATFDLATAFETIYFWPDIVEDFKEVRRVLKPGGRFAVCNEMASEAGNERWISLLDMKIYTPDEIVENMTKAGFTQTSVFTQGNRICVIGR","1543353 1543961","TIGR ID: PG1467","probable methyltransferase","Cytoplasm","One significant hit and numerous weak hits in gapped BLAST; e.g. residues 6-201 are 41% similar to gb|AAD40706.1|AF048749_2 putative methyl transferase of Bacteroides fragilis, residues 51-150 are 36% similar to gb|AAC01738.1| methyltransferase of Amycolatopsis mediterranei, residues 51-148 are 35% similar to gb|AAC34989.1| 24-methylene lophenol C24(1)methyltransferase of Oryza sativa.","
InterPro
IPR013216
Domain
Methyltransferase type 11
PF08241\"[52-150]TMethyltransf_11
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.150\"[27-191]TG3DSA:3.40.50.150
PTHR10108\"[22-193]TPTHR10108
PTHR10108:SF11\"[22-193]TPTHR10108:SF11
SSF53335\"[17-203]TSSF53335


","BeTs to 10 clades of COG0500COG name: SAM-dependent methyltransferasesFunctional Class: RThe phylogenetic pattern of COG0500 is AMTKYQVCEBRHUJgPOLINXNumber of proteins in this genome belonging to this COG is 7","***** IPB000339 (ubiE/COQ5 methyltransferase family) with a combined E-value of 8.5e-07. IPB000339B 52-63 IPB000339D 115-154","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Jun 5 11:13:12 MDT 2001","Tue Mar 6 15:45:46 MST 2001","Tue Mar 6 15:45:46 MST 2001","Tue Mar 6 15:45:46 MST 2001","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 70-181 are 29% similar to PG1628, a predicted methyltransferase.","Tue Mar 6 16:05:49 MST 2001","Tue Mar 6 15:45:46 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue May 8 16:51:34 MDT 2001","34541135","","","Comstock,L.E., Coyne,M.J., Tzianabos,A.O., Pantosti,A., Onderdonk,A.B. and Kasper,D.L. 1999. Analysis of a capsular polysaccharide biosynthesis locus of Bacteroides fragilis. Infect. Immun. 67 (7): 3525-3532. PubMed: 10377135. ","","Tue Mar 6 15:45:46 MST 2001","1","","","PG1467" "PG1283","1545086","1544442","645","ATGAGCGGAAGATTTAACCCAGAGTATATAGATTGCACATTGCAGATATTGGAGAGGCGTTGTTTGACTTTATTGTGCGATGGTTATTGTGTCGTTAAATCTAAAGGAAGTATTTCTATTGACAAGGAAGAGGAAGATATATCGAAAGAACTACTACTATCTATAAATGCGAATATAAAAAGGATGGAATGGCAAATAGATATTATTCCTGAATACAGGCTCTATAAAAATGATGGCATTGCTGCTAAAAGTGCAGCAAGAATTGATTTCCGTTTCTCTGGTTGGAGTACAAATCAGTGGGAGTATTTTGCTGAAGCCAAAAATTTAATTGAAATTGATTCTTTCAAAGCTGGACGAAAAACAAAAATTTCGGCAAACCAACTCCATAGGCGATATATAGAAACAGGCATTGATAATTATTTGTCAAGTAAATATCCACAAAACGGATGTTTGATCGGCTATATCCTTCAAGGAAAAACTGAAAACATAGTATCAATGTTGAACATATGTTTGTGTGCTTTGAATCGAAAAACAGAACTTTTACAATCTAAGGATTTGGAATTCGCAGATTTTATATCATGTTATGTTTCTTCGCATGAGAAATTTCTTTCCATGAAGCATTTAATGTTTGATTTTGCCAATAAT","7.20","0.35","24849","MSGRFNPEYIDCTLQILERRCLTLLCDGYCVVKSKGSISIDKEEEDISKELLLSINANIKRMEWQIDIIPEYRLYKNDGIAAKSAARIDFRFSGWSTNQWEYFAEAKNLIEIDSFKAGRKTKISANQLHRRYIETGIDNYLSSKYPQNGCLIGYILQGKTENIVSMLNICLCALNRKTELLQSKDLEFADFISCYVSSHEKFLSMKHLMFDFANN","1545086 1544442","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","","Tue Mar 6 16:06:57 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 6 16:06:57 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Mar 6 16:06:57 MST 2001","","","","","","","1","","","" "PG1284","1548091","1545086","3006","ATGAGTACAAATTTTTTCTATAAGAAATTAGGCTATGAGCATTTAGTGAGATGTTCAGGAATAACGACCTCTAATCCTGAATACCAGGAGTTGGGAAAAATTGGTGCAGATAAGGTTTATTTTTCAGGGGATTTTCCTGCCATTCTTTTTAAAGAAGTCGAGGCATTCGATATATACGCTTTAACACAAATTGCCCAAATTCAACATAAAGCATGGAACTATCGAAAAATCATGTTTCTTTTTGTCGTATCAGACACTGAGATTCGGATTTACAATTGTCACGAAAAGCCCAGGTTCATAAAGTCTGATTCTGACTATGAAAAGGAATTAAGCCCCTATCAGATTTTTAGAAGCACAAAAGAAGATGAGGCAAGTTTAAAAATTTTAGTTGAGATTTTTTCTCGCATAGGCGTTGACAGTGGTTTACTATGGACAAGCGACTACAATCTTCGTGATGAAATTAATGTTCAGAAGAGAATAGATAGGTATTTAGTAGAAAGTTTGCTGAGAACGGCCGATGCATTAAAAGAGGATATTACAGACACTAATATTATTCATGGATTACTCATGCGCTCTCTTTTTATCTTATATCTTGAAGATAAAGGGGCTGCGAAAGAAGCAGGGTTATACAGAGAAATCAGGAAGGATGCGGAAAGTTATTTCGATATTTTAGATGATGTAGATGCTACATATAAGTTGTTTGCTAAATTGCAAGACCATTTTAATGGTAACGTTTTCCCAATAATTGAAGATGAACAATCGAAAGTAAAAAAAGAACACTTAGAAAAAATAAAAAAATGTTTCATCGATGGAGATATTTCAGGACAACCGAAGCTGTTTGAAAATTGGAGAATATTCAAATTTGATTTTATCCAAATAGAATTATTGAGTGAGGTATACGAAAACTTTCTTGGCGAACTTGATACAAAAAAAGAAAAAGGACAATTCTATACTCCATATACTTTGGTAGAATTAATTCTAAACGACAAATTGCCAATCAAAAATGAAACAAATTACAATGTTAAAATTTTAGATCCGGCTTGTGGTTCTGGAATTTTCTTAGTCGAAAGTTATAAAAGACTTATTAGGAGATGGAAAAATAAAAATCCAGAGAAGGTCATAACCTTCAAAGAACTTAATGATATACTTGTAAAAAACATCTTTGGAATCGAAATAGATCCATTAGCTATTAAAGTAACAGCTTTCAGCCTATATTTGGCATTAGTTGAGCATCTTAACCCCAAGAAACTCTGGATAGACAAAACCAATAAATTCCCTTATTTGATAGATAATCCTAACGATATTTCAATTAAAGAAAAAAAAGGAAAAAATCTGTGGTGTCGGGATACTATTGGGGAAGTGAATCCTGATGATTTTGAAAAGGTGAATTTGGTTATTGGGAACCCACCTTTTGGGACTAAGAAATTGTCAAAATCGATAATGGACTATTGTGTCAAATATAATTTTGGCAAAGAGATGGTTTTACCATTTCTACATAAATCCATTGAGTTTTGTCCTGATGGAGAAATTGCTTTAATTTTTAATACAAAAGTGCTTACCAACACAAAAAAAACTTACCAGAATTTTAGGCACTGGCTATTAAATGAGAACTATGTAGAAAAACTCTATAATTTATCTATATTTAGGAAATCGCCGAGAAACTTTGGAGGACAACTATTTACTTCTGCAATAGGTCCAATATGCATTATCTATTTTCAAGCAAAAACACCACCTAAGGCGTCTAATACAATTGAGTATTGGGCTCCTAAGACCTACGTTAAATCCAACTTAATTGATGGGGTATTAGTTGATTCTACAGATATCAAATTTCTCCCACGAACGGAGTGCCAAATTCCAAACAGTAAAATATGGAAAATAGCCATGTGGGGCAATATTGCAGATTATAATCTAATAAAACGCCTATCCAACACCTATCCTTCTTTACAAAGGAGTTTTAAAGATAAAGTTGTCTATGGTGTTGGATTAGAAACAAGTGTTCCTTGCAAAAAAACAGATGAAAATATCAAATTAATTCCTCATCACACATCAAAAACAATCAAACGTTTTTATACACCTATTAACTTTGGTACTAGAATAACAAATTCCTTTTTCAGAAGATTAGGATATGTTGATGCATATAGGGCTCCTCACCTATTATTGAATGAGGGAGTCCAGAAAAATAAACTCACGGCTTCTTTTTTGGATTACGATTGTTCTTATTTTAAGGGAATCGTAGGTATTATTTCCGAAAAATCTGATGAAAATATTTTGAAACTAACTTGCGCATTTTTAAATTCATCATTTGCTCAATATTATGCTTTTATGACAACTTCTTCATGGGGTATTGAGAGAGATGTTGTTAAACATCAAGAATTATTCACCATTCCTTTCATCATAGAAAACTTCACCGAGCAAAAAAAGCAAACAATTATTTCATTATTGGATAGTGTTATTAAGAAGCAATCCCAAATATCTTTTGGGGATTATTTGGAGCTTGAAGATAATATTAATACCATTCTTCTCGATGATTTAACAGAAAAAGATAGAATTATTATAACGGACTCTCTTCGACAGATAGACCTCTTCCAAAAAGGGAGTAAATCAAAGTTGCTAAGGCACACAACTAATAATGAAAATTTGGCCTATGCCGAGATTTTAAAACAAGAGCTGAATGATTTTTATTCCGGCACTGGCCATGGAATTAATATAGCTGTATATGATGTGCAGCGACATGACCCTTTAAACTTGGTGACATTGCATTTCTGCAAAAAAGAAAAACCTATTGAAATAAAGCAGACGAATGAACTATCTTCCTTGCTTAAAGAATTAGACAAGTATTCTATTCAAGAAAAAGGTAAAAATATATATGTACAAAAACAATTCAGATATTACGATAGGGATAAAATATATTTGATTAAGCCAAATCAGAAGCGTTTTTGGACACGTTCACAGGCTATTGATGATGCCCTCTCGCTCATCGTTGAAATTGCAAATTTGGGAACAAAA","8.50","12.59","116577","MSTNFFYKKLGYEHLVRCSGITTSNPEYQELGKIGADKVYFSGDFPAILFKEVEAFDIYALTQIAQIQHKAWNYRKIMFLFVVSDTEIRIYNCHEKPRFIKSDSDYEKELSPYQIFRSTKEDEASLKILVEIFSRIGVDSGLLWTSDYNLRDEINVQKRIDRYLVESLLRTADALKEDITDTNIIHGLLMRSLFILYLEDKGAAKEAGLYREIRKDAESYFDILDDVDATYKLFAKLQDHFNGNVFPIIEDEQSKVKKEHLEKIKKCFIDGDISGQPKLFENWRIFKFDFIQIELLSEVYENFLGELDTKKEKGQFYTPYTLVELILNDKLPIKNETNYNVKILDPACGSGIFLVESYKRLIRRWKNKNPEKVITFKELNDILVKNIFGIEIDPLAIKVTAFSLYLALVEHLNPKKLWIDKTNKFPYLIDNPNDISIKEKKGKNLWCRDTIGEVNPDDFEKVNLVIGNPPFGTKKLSKSIMDYCVKYNFGKEMVLPFLHKSIEFCPDGEIALIFNTKVLTNTKKTYQNFRHWLLNENYVEKLYNLSIFRKSPRNFGGQLFTSAIGPICIIYFQAKTPPKASNTIEYWAPKTYVKSNLIDGVLVDSTDIKFLPRTECQIPNSKIWKIAMWGNIADYNLIKRLSNTYPSLQRSFKDKVVYGVGLETSVPCKKTDENIKLIPHHTSKTIKRFYTPINFGTRITNSFFRRLGYVDAYRAPHLLLNEGVQKNKLTASFLDYDCSYFKGIVGIISEKSDENILKLTCAFLNSSFAQYYAFMTTSSWGIERDVVKHQELFTIPFIIENFTEQKKQTIISLLDSVIKKQSQISFGDYLELEDNINTILLDDLTEKDRIIITDSLRQIDLFQKGSKSKLLRHTTNNENLAYAEILKQELNDFYSGTGHGINIAVYDVQRHDPLNLVTLHFCKKEKPIEIKQTNELSSLLKELDKYSIQEKGKNIYVQKQFRYYDRDKIYLIKPNQKRFWTRSQAIDDALSLIVEIANLGTK","1548091 1545086","TIGR ID: PG1469","conserved hypothetical protein","Cytoplasm","Numerous weak hits in gapped BLAST; e.g. residues 160-433 are 24% similar to emb|CAC12457.1| type IV site-specific deoxyribonuclease Eco57I related protein of Thermoplasma acidophilum, residues 291-614 are 23% similar to gb|AAK08958.1|AF306668_3 DNA methyltransferase BseMII of Bacillus stearothermophilus, residues 303-409 are 30% similar to emb|CAB45593.1| putative DNA methylase of Streptomyces coelicolor.","
InterPro
IPR002052
Domain
N-6 Adenine-specific DNA methylase
PS00092\"[465-471]?N6_MTASE
InterPro
IPR002296
Family
N6 adenine-specific DNA methyltransferase, N12 class
PR00507\"[314-330]T\"[343-357]T\"[462-474]TN12N6MTFRASE
InterPro
IPR003356
Domain
N-6 DNA methylase
PF02384\"[291-359]TN6_Mtase
InterPro
IPR011639
Domain
Restriction endonuclease, Eco57I
PF07669\"[461-576]TEco57I
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.150\"[316-577]TG3DSA:3.40.50.150
SSF53335\"[316-595]TSSF53335


","BeTs to 3 clades of COG1002COG name: Type II restriction enzyme, methylase subunitsFunctional Class: LThe phylogenetic pattern of COG1002 is -m-------b--uj--O----Number of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","Residues 294-406 are 33% similar to a (METHYLTRANSFERASE RESTRICTION PROTEIN TRANSFERASE ENZYME) protein domain (PD002294) which is seen in YZ42_METJA.Residues 296-490 are 26% similar to a (METHYLASE METHYLTRANSFERASE) protein domain (PD128716) which is seen in P72289_RHILE.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Mar 6 16:22:50 MST 2001","Tue Mar 6 16:22:50 MST 2001","Tue Mar 6 16:22:50 MST 2001","","Tue Mar 6 16:22:50 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 294-409 are 25% similar to PG0772, a probable type II DNA modification enzyme (methyltransferase).","Tue Mar 6 16:45:22 MST 2001","Tue Mar 6 16:22:50 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Mar 6 16:22:50 MST 2001","34541136","","","","","","1","","","PG1469" "PG1285","1548674","1549138","465","ATGAGCTACATAGACAAAACATTGCTGACGGGTGAAACCGTTACATACAAAGCCCAAGTGCATTGGTGGGTTTTTGTTTATCCGATGAAATTCCTGTTGTTCGGACTTCTGTTGATATCCTTTTCACCACTCTACATCAAGATTCCGGGTTATGTGCTGATCGCTATAGCCCTATGGGGGATTATCAACAGTTACCTCGGCCGGCGCTATGCCGAATACGTCGTAACCAATAAACGGGTAATTTTCAAATTAGGCCTGATTCGTCGCAGCGTTGTCGAATTGCAGCTGAACAAAGCCGAAGCCATCGCTTTCGGAGAATCGTTCTGGGGACGAATTTTCAACTTCGGAACGGTGGTCGTAACTACCGGAGGTGCTACCAACACCTATCATTACATCGCCGATCCTCTGAGCTTTCGCAGAGCTATCAGCGAAGAGGTAGATAAGCGTTTCGGCAAAGGCAACGAA","10.50","7.47","17744","MSYIDKTLLTGETVTYKAQVHWWVFVYPMKFLLFGLLLISFSPLYIKIPGYVLIAIALWGIINSYLGRRYAEYVVTNKRVIFKLGLIRRSVVELQLNKAEAIAFGESFWGRIFNFGTVVVTTGGATNTYHYIADPLSFRRAISEEVDKRFGKGNE","1548674 1549138","TIGR ID: PG1471","hypothetical protein","Inner membrane, Cytoplasm","No significant hits in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-40]?signal-peptide
tmhmm\"[21-39]?\"[49-67]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Mar 6 16:48:54 MST 2001","Tue Mar 6 16:48:54 MST 2001","Tue Mar 6 16:48:54 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 6 16:48:54 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Mar 6 16:48:54 MST 2001","34541138","","","","","","1","","","PG1471" "PG1286","1549176","1549820","645","ATGATGGAGATATTGAATCGGATTATCGGTGAACTCAAGGAAGCCTTCCAGTATTTCAAAGAGAGAACGAAGCATAAATATTATGGCGACCGCTTCGAAGAATGGGTTGTGATGCACTCCAATATCAGCAAAGACGGTATGCCGGGCACAGGAGAACATCTTCCATTCTGGAGGTTATTGGAGTGGCGCGGGGATAAGTACGTCAACGGATACCGTCCCGTATCTTCCTCAGCTCCGGATTTACTATTGGAGTGTATCTCCAATAAGAGTTCCAGTTATGTCTCCGGAGATATTATCGCCGTAGAATGCAAATGGCGCAGCACAGTAAGTTTCTTTATTCCCAAGAGCGATGCCGAGAAATATGAGAAATATTTCCGTACCAACAAGACAAGATACCCTGTCAAGCATCTGTTTTATCTTTTCGGTTTCGGATGGTCCCGTAATGCACCGGAAGCCGTATATGTAATTCCATCCACGGCATTGTACGAATATGATGAAGAAACGTTCGAAATAACGTTTCCCAATGGAGAATCAATGAAGGAGAAGCAGCTCCGGATGGAAGATTATAAGGTGCAATCCGGTGTCCTGATTTACGCTTTTCCGGAAAACGGAAAGCGCCTATCCTCTCGGACGGGCGCCTTCTCT","8.10","1.88","25203","MMEILNRIIGELKEAFQYFKERTKHKYYGDRFEEWVVMHSNISKDGMPGTGEHLPFWRLLEWRGDKYVNGYRPVSSSAPDLLLECISNKSSSYVSGDIIAVECKWRSTVSFFIPKSDAEKYEKYFRTNKTRYPVKHLFYLFGFGWSRNAPEAVYVIPSTALYEYDEETFEITFPNGESMKEKQLRMEDYKVQSGVLIYAFPENGKRLSSRTGAFS","1549176 1549820","TIGR ID: PG1472","hypothetical protein","Cytoplasm","No significant hits with an E value less than e-04 using gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Mar 6 16:52:25 MST 2001","Mon Jun 4 15:11:56 MDT 2001","Tue Mar 6 16:52:25 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 55-214 of PG1286 are 80% similar to PG0509, a hypothetical protein.","Mon Jun 4 15:11:56 MDT 2001","Tue Mar 6 16:52:25 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jun 4 15:11:56 MDT 2001","34541139","","","","","","1","","","PG1472" "PG1287","1550318","1549857","462","ATGAAAAGAAAATGGATCGATGCGCTGTGGGTGATGGGAGTATTGCTCATGGCCGGGTTTTGTTTATCTGCTTGTAATCGGGAGCTGGACGTGCAGACGGTTTTTCCGTTTGAAGTAAGCACGATGCCGGTTCCCAAACAAATCAAACAGGGCGAAACCGTGGAAGTGCGCTGTTCCCTCGTTTCGGAAGGCGATTTTTCCGGAACGTGCTATACAATGCGATTTTTTCAAACGGAGGGGAAAGGTGTTTTGCGGATCGGACGCGGGGTTGCTCTCAAACCCAATGACTGTTATCCGGTGGGTAAGGGAGACTTCCGCCTCTACTATACCTCGCAAAGCAAAGAGCGGCAGTCGCTCGAAATCGTCTTCGAGGACAATCATGGACAATCGCAAACGATCGTTCTGGATTTTAATCACAAAGAATCGGACGAGGATAAAGAGCGAGAAGCCGGTTACCGCACC","5.90","-1.76","17562","MKRKWIDALWVMGVLLMAGFCLSACNRELDVQTVFPFEVSTMPVPKQIKQGETVEVRCSLVSEGDFSGTCYTMRFFQTEGKGVLRIGRGVALKPNDCYPVGKGDFRLYYTSQSKERQSLEIVFEDNHGQSQTIVLDFNHKESDEDKEREAGYRT","1550318 1549857","Bacteroides species harbor large self-transmissible integrated elements called conjugative transposons (CTns). Bonheyo et al. (2001) report the first complete sequence analysis of the transfer region of a Bacteroides CTn. The transfer region contained 17 genes (designated orfA-orfQ). Only 2 of the genes shared sequence similarity with genes in the databases and only 1 of these genes was associated with self-transmissible elements. TIGR ID: PG1473","transfer region-related protein TraQ","Cytoplasm, Outer membrane, Inner membrane","One significant hit in gapped BLAST; e.g. residues 14-145 are 41% similar to gb|AAG17842.1|AF289050_17 TraQ of Bacteroides thetaiotaomicron, a transfer region protein.","
noIPR
unintegrated
unintegrated
signalp\"[1-23]?signal-peptide
tmhmm\"[5-25]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Tue Nov 18 16:06:01 2003","Tue May 8 17:30:02 MDT 2001","Tue May 8 17:25:51 MDT 2001","Tue Mar 6 16:57:11 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 6 16:57:11 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue May 8 17:25:51 MDT 2001","34541140","","","Bonheyo,G.T., Graham,D., Shoemaker,N.B. and Salyers,A.A. Transfer Region of a Bacteroides Conjugative Transposon CTnDOT, Plasmid. 2001 Jan;45(1):41-51, PubMed: .Xu,J., Bjursell,M.K., Himrod,J., Deng,S., Carmichael,L.K.,Chiang,H.C., Hooper,L.V. and Gordon,J.I.A Genomic View of the Human-Bacteroides thetaiotaomicron SymbiosisScience 299 (5615), 2074-2076 (2003)PUBMED 12663928","","Tue Nov 18 16:06:01 2003","1","","13","PG1473" "PG1288","1550909","1550334","576","ATGGTGATGAAGAAGTGTCTGTTTTTACTCGTCTGTGTCGTCGTAATGGCCACTCCTTTGTACGCACAACGCCTGATTCCCGGACAAAAGGGGATGGAGATTACGGGCAGCCTGCCTGTTATCAACGGAGAGAAGCTCTTCCGAAAAGATCATTTCGGTGTCGGAATATCGTTTACCCGCTACCTCAAAAGCGAAAACTACACCTTTCTCACCGCCGAATACGAGCAGCAGAATATGGCTTATCGAAGCTATCGTGTGCCGATGAAAGATGCCTTCCTGCAGGTCGGCTATATGCATCCCGTACTGTCGGATGGCGGGAAGAATCTCTTTGTCTGTGCGGGTATTTCCGCTTTAGGCGGTTACGAAGAACTTGACCGGGGTAGAACTTTTTTACCCGACGGCGCCCGCCTCTTGGATCGTTCGGGCTTCGTGTATGGCGGCGCCGTGCATCTGTCGATGGAGCTTTTTCTGACGGACAGTCTCTTGCTGCTCGTCAAAGCTCAGGGACGCTTGTGTTTCGGATCGGATGTGAATCTCTTTCGTCCCGCTCTCTCGGCGGGATTTCGTATAAACCTC","9.30","5.52","21367","MVMKKCLFLLVCVVVMATPLYAQRLIPGQKGMEITGSLPVINGEKLFRKDHFGVGISFTRYLKSENYTFLTAEYEQQNMAYRSYRVPMKDAFLQVGYMHPVLSDGGKNLFVCAGISALGGYEELDRGRTFLPDGARLLDRSGFVYGGAVHLSMELFLTDSLLLLVKAQGRLCFGSDVNLFRPALSAGFRINL","1550909 1550334","TIGR ID: PG1474","transfer region-related protein TraO","Inner membrane, Cytoplasm","One significant hit in gapped BLAST; e.g. residues 21-189 are 32% similar to gb|AAG17840.1|AF289050_15 TraO of Bacteroides thetaiotaomicron.","
noIPR
unintegrated
unintegrated
signalp\"[1-22]?signal-peptide
tmhmm\"[5-23]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue May 8 17:30:57 MDT 2001","Tue Mar 6 17:06:40 MST 2001","Tue Mar 6 17:06:40 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 6 17:06:40 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue May 8 17:28:42 MDT 2001","34541141","","","Bonheyo,G.T., Graham,D., Shoemaker,N.B. and Salyers,A.A. Transfer Region of a Bacteroides Conjugative Transposon CTnDOT, Plasmid. 2001 Jan;45(1):41-51, PubMed: .Xu,J., Bjursell,M.K., Himrod,J., Deng,S., Carmichael,L.K.,Chiang,H.C., Hooper,L.V. and Gordon,J.I.A Genomic View of the Human-Bacteroides thetaiotaomicron SymbiosisScience 299 (5615), 2074-2076 (2003)PUBMED 12663928","","Tue Nov 18 16:06:42 2003","1","","13","PG1474" "PG1289","1551928","1550906","1023","ATGAAAAAATGGACTTTATCGGCTGTCCTGCTTACGACTATCGGAGCGACAGCCCTTGCGCAGGATACGACTGCCACTTTACCGGCCGGTCATCCTCTTTCAGGCGGAGCGTTTTACCGGGGAATGAGTAAGGCGATTCCCGAAGGCCGGGTCGTATTGCCTTACGGACTGGAGGTGACTTTTGAAAAGACCGTTCACCTGATTTTTCCCTCCGCCATCCGCTATGTCGATCTGGGAAGCAATAACCTGATTGCCGGAAAAGCGGAAGATGCCGAAAACGTGCTGCGTGTCAAGGCTGCCGTACGGAATTTTGAAACGGAGACCAACCTGTCGGTCATTTGTGAAGACGGTTCATTTTACTCCTACAATGTGAAGTATGCCGAAGAGCCGGAGAAACTCAATGTGGAGATGAAAGACTTCTTGTGCCAACGAGGGCAGAGCGGAGCTTGCTCCGGCTATGCCGAGGGCAGCCAGGACAGGCGCGAAGCGCAATTCCTGTATTCCGGAGAAGGACGCCTGCCTTCGAACCGTGCCGACATCTACTTCAAGGAATTGGGCAACGAGTCGCCTGTACTTGTGAAGCTGATGATGCAAACCATCTACAAGCATAATAAGCGAACGGTTAAGCACATCGGTGCGCGGCATTTCAGCATGCAGTTTCTCCTTCGAGGACTGTATGCACACAACGGGCTGCTTTTCTTCCACGTCGTTATCGAAAATCAGACGAATATACCCTGCTCGGTGGACTTCATCACCTTCAAAGTGGTGGATAAAAAGGTGGCCAAACGCACAGCGATTCAGGAGCAGGTTTTGCAGCCGCTTCGAGCCTGCCATCAGGTGGCATGGATCAGGGGGAAGACGTCCGAACGGACGGTCTTTGCGCTGGAGCAGTTCTCCCTGCCCGAAGACAAGCAGCTGGAAGTAACGCTTTACGAGCGTAACGGTGGACGAACCCTGACATTCTGCGTGCAGCAGGAAGACCTGTTGCGAGCCGAACGAATCGATAACCTGAAACTCCGATGG","8.70","6.66","38493","MKKWTLSAVLLTTIGATALAQDTTATLPAGHPLSGGAFYRGMSKAIPEGRVVLPYGLEVTFEKTVHLIFPSAIRYVDLGSNNLIAGKAEDAENVLRVKAAVRNFETETNLSVICEDGSFYSYNVKYAEEPEKLNVEMKDFLCQRGQSGACSGYAEGSQDRREAQFLYSGEGRLPSNRADIYFKELGNESPVLVKLMMQTIYKHNKRTVKHIGARHFSMQFLLRGLYAHNGLLFFHVVIENQTNIPCSVDFITFKVVDKKVAKRTAIQEQVLQPLRACHQVAWIRGKTSERTVFALEQFSLPEDKQLEVTLYERNGGRTLTFCVQQEDLLRAERIDNLKLRW","1551928 1550906","TIGR ID: PG1475","transfer region-related protein TraN","Cytoplasm, Periplasm","One significant hit in gapped BLAST; e.g. residues 36-340 are 54% similar to gb|AAG17839.1|AF289050_14 TraN of Bacteroides thetaiotaomicron, a transfer region protein.","
noIPR
unintegrated
unintegrated
signalp\"[1-20]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue May 8 17:33:00 MDT 2001","Tue May 8 17:33:00 MDT 2001","Tue Mar 6 17:18:13 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 6 17:18:13 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue May 8 18:40:45 MDT 2001","34541142","","","Bonheyo,G.T., Graham,D., Shoemaker,N.B. and Salyers,A.A. Transfer Region of a Bacteroides Conjugative Transposon CTnDOT, Plasmid. 2001 Jan;45(1):41-51, PubMed: .Xu,J., Bjursell,M.K., Himrod,J., Deng,S., Carmichael,L.K.,Chiang,H.C., Hooper,L.V. and Gordon,J.I.A Genomic View of the Human-Bacteroides thetaiotaomicron SymbiosisScience 299 (5615), 2074-2076 (2003)PUBMED 12663928","","Tue Nov 18 16:08:27 2003","1","","13","PG1475" "PG1290","1553312","1551954","1359","ATGAACAATGAAAAACATCCGAAACATCCGCATCCCGTTTTTCCGGAGACCCCGGGAAAGGGAGCGGACAAAGAAGAGAAAGAAAAAAGAGAACAGTCCGAAAAGAAGAAAGAACAGCTTAAAAAACTGCTTGTCTTCGCCGGATTAGGCATCCTCTTCCTGATTTCCTTATGGCTGATCTTCTCTCCTTCGGCCGAAGAGCGACAAAAGGAAGAGAGGACAGCAGGTCTTAACGAAACCGTTCCGCAAGCCACCGACGGGGAACTGCCCGACGATAAACTGAAAGGCTATGAACTGGGGCGCGATGAAGAAAAGGAATCCCACCGGCAGGAGACCCTCGGCAACCTCTACGACTATTTCGAGAAGAAAGACGAAACACGGGAGCAGGAAATCTCGGAAGAGGCCGCTTCGGACGGGCTTCATCCGATCGAGCGGTCGGTAAGCCGGTATGAAGAAACGTCGCAGATGGTACATTCATTCTACGAGCCACCGGCATACGACTATGAGAAAGAAGCCCTGCGGGAAGAGCTGGACATGATACGCTCCGAACTCGCAACTCTCAAGGAGGAAAAAGAGGAGGAGATCGATCATCTCGAACTGCTCGAAAAATCTTACCGGATGGCAGCCAAATACTTCCCGGCCTCCGGTGATGCAAATTCCCGGGATGCATACACCCGGAGTCAGGAACGCCCGGCCGATGCTCCCGCACCCAAGACAGCGGTGACAGCAGAACGGGCGGCTTTACCCGCTGTGGAGCTTCTTCCGGAGAAGAAAGCAATCGTTTCGTCTCTGGATCAGCCCATGAGCGATTCGGCTTTTATCGCCGAGTACGGGCATAAGGAGCGAAACTTCGGTTTCCGGTCTGCCGACGTGCCGGCATCGTCCGTCACCCGTAATACGTTGCGGGTGGTCGTGGACAGGACAACCACCCTGCAGCATGGAGACTTCGTACAACTCCGTCTGCTGGAGTCCGCTCGCCTGCACGACCTTTCCATTCCCCGTCATACCCGACTGATGGCACAGGCCCGAATCGACGGCAACCGGATGAAGCTTCATATCACGAGTATCGAGTATGGCGGACGGATCGTTTCCGTTCAGCTCTCCGCCTTCGATACGGACGGACAGGAAGGAGTTTTTATTCCCGGATCGGAAGAGGTCTCCGCGCTGAAAGAAGTGGGAGCCAATATGGGAGGAACGGTCGGGACTTCGTTCACCTTTGCTTCCTCCGCCAAAGACCAGATCCTTTCCGAAGCGGCCCGCGGGGTGATGCAGGGAGCGAGTCAGCTCCTGCAAAAGAAACTCCGCACCGTAAAAGTGACGCTCAAAGGCGGGTACCGACTCTTTTTAGTACAGACAAAG","5.50","-11.04","50888","MNNEKHPKHPHPVFPETPGKGADKEEKEKREQSEKKKEQLKKLLVFAGLGILFLISLWLIFSPSAEERQKEERTAGLNETVPQATDGELPDDKLKGYELGRDEEKESHRQETLGNLYDYFEKKDETREQEISEEAASDGLHPIERSVSRYEETSQMVHSFYEPPAYDYEKEALREELDMIRSELATLKEEKEEEIDHLELLEKSYRMAAKYFPASGDANSRDAYTRSQERPADAPAPKTAVTAERAALPAVELLPEKKAIVSSLDQPMSDSAFIAEYGHKERNFGFRSADVPASSVTRNTLRVVVDRTTTLQHGDFVQLRLLESARLHDLSIPRHTRLMAQARIDGNRMKLHITSIEYGGRIVSVQLSAFDTDGQEGVFIPGSEEVSALKEVGANMGGTVGTSFTFASSAKDQILSEAARGVMQGASQLLQKKLRTVKVTLKGGYRLFLVQTK","1553312 1551954","TIGR ID: PG1476","transfer region-related protein TraM","Cytoplasm, Extracellular","One significant hit in gapped BLAST; e.g. residues 68-453 are 32% similar to gb|AAG17838.1|AF289050_13 TraM of Bacteroides thetaiotaomicron.","
InterPro
IPR013256
Family
Chromatin SPT2
SM00784\"[93-203]Tno description
noIPR
unintegrated
unintegrated
tmhmm\"[43-61]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue May 8 17:35:04 MDT 2001","Wed Mar 7 08:20:41 MST 2001","Wed Mar 7 08:20:41 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 7 08:20:41 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue May 8 17:35:04 MDT 2001","34541143","","","Bonheyo,G.T., Graham,D., Shoemaker,N.B. and Salyers,A.A. Transfer Region of a Bacteroides Conjugative Transposon CTnDOT, Plasmid. 2001 Jan;45(1):41-51, PubMed: .Xu,J., Bjursell,M.K., Himrod,J., Deng,S., Carmichael,L.K.,Chiang,H.C., Hooper,L.V. and Gordon,J.I.A Genomic View of the Human-Bacteroides thetaiotaomicron SymbiosisScience 299 (5615), 2074-2076 (2003)PUBMED 12663928","","Tue Nov 18 16:09:12 2003","1","","13","PG1476" "PG1291","1554209","1553589","621","ATGGAATTCAAATCATTGAAAAATATCGAAACATCGTTCCGGCAGATCCGGCTTTATGCCATTGCCTTTGTCGTACTCTGCCTCATTATCACGGGCTATGCCGTTTTTTCATCCTATTCCTTTGCAGAAAAACAGCGGGAGAAAGTCTATGTGCTGGACAACGGAAAGTCGCTTATGCTCGCTCTCAGCCAGGATGCCAAAGCCAACCGTCCCGTGGAAGCCCGCGAGCACGTCAGGCGTTTTCACGAACTCTTCTTTACGATTGCGCCGGACAAGGCGGCCATCGAAGGGAATGTCAAACGCGCTTTGATGCTGGCCGACAAAACGGCCTACAATTACTACAAAGACCTGATGGAAAAAGGATATTACAGCCGGATGATTTCAGGCAATATCCACCAGCGTATCGAGCTCGACTCCATCCGGTGCGATTTCGAGGCCTATCCTTATCGGGTCAGGACTTACGCCCGGCAGTTTATCGTCCGCCAGAGCAACATCACGGAGCGGTCGCTTATCACCGAATGCAGCCTGATCAATTCCGTTCGTTCGGACAACAATCCGCAGGGTTTCCTGTTGGAACGTTTTACCGTGCTGCAAAATCAGGACATTCAAACCGTGAAACGA","10.20","8.58","24210","MEFKSLKNIETSFRQIRLYAIAFVVLCLIITGYAVFSSYSFAEKQREKVYVLDNGKSLMLALSQDAKANRPVEAREHVRRFHELFFTIAPDKAAIEGNVKRALMLADKTAYNYYKDLMEKGYYSRMISGNIHQRIELDSIRCDFEAYPYRVRTYARQFIVRQSNITERSLITECSLINSVRSDNNPQGFLLERFTVLQNQDIQTVKR","1554209 1553589","NO TIGR ID corresponds to this gene.TIGR ID: PG1478","transfer region-related protein TraK","Cytoplasm, Periplasm","One significant hit in gapped BLAST; e.g. residues 1-207 are 67% similar to gb|AAG17836.1|AF289050_11 TraK of Bacteroides thetaiotaomicron, a transfer region protein.","
noIPR
unintegrated
unintegrated
signalp\"[1-34]?signal-peptide
tmhmm\"[21-41]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Tue Nov 18 16:10:02 2003","Tue May 8 17:37:23 MDT 2001","Tue May 8 17:37:23 MDT 2001","Wed Mar 7 08:27:02 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 7 08:27:02 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue May 8 17:37:23 MDT 2001","34541145","","","Bonheyo,G.T., Graham,D., Shoemaker,N.B. and Salyers,A.A. Transfer Region of a Bacteroides Conjugative Transposon CTnDOT, Plasmid. 2001 Jan;45(1):41-51, PubMed: .Xu,J., Bjursell,M.K., Himrod,J., Deng,S., Carmichael,L.K.,Chiang,H.C., Hooper,L.V. and Gordon,J.I.A Genomic View of the Human-Bacteroides thetaiotaomicron SymbiosisScience 299 (5615), 2074-2076 (2003)PUBMED 12663928","","Tue Nov 18 16:10:02 2003","1","","13","PG1478" "PG1292","1553589","1553305","285","ATGAAACGGTTCTATCTGAAAATACACCTCGGCCTAAAGCGGCAATGTGACCGTTTAAGCCCCCTGCAACGAAAAATCGCGGTATTCGGGCTGAGCCTGATTTATCTGTGCTGTTCGCTCGGTATGATTGTCCGGTTCTTTGCTCCGTCCGATTACAGACCGGTGGAAGAAAAAAGATTCCGCGAGCTGATCGACAGTCCCGTTCGCACGGACAGCCTTCGGCCGGAGCGACTTCCGCAAAAGCATTACGCCAAAAATTACCTTAATACGATCGAATATGAACAA","10.50","8.32","11391","MKRFYLKIHLGLKRQCDRLSPLQRKIAVFGLSLIYLCCSLGMIVRFFAPSDYRPVEEKRFRELIDSPVRTDSLRPERLPQKHYAKNYLNTIEYEQ","1553589 1553305 [Delay by 198 1660 199 0]","TIGR ID: PG1477","hypothetical protein","Cytoplasm","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-41]?signal-peptide
tmhmm\"[26-48]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","","Wed Mar 7 08:28:35 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 7 08:28:35 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue May 8 17:41:19 MDT 2001","34541144","","","","","","1","","13","PG1477" "PG1293","1555327","1554224","1104","ATGGATTTTGCCAACTTACACGAGCTGCTGCGCTCTACCTACGAGGAGATGATGCCCCTGTGCAGTGAAATGACCGGCATTGCCAAAGGCATTGCCGGGTTGGGTGCGCTTTTTTACATCGCCTTGCGCGTCTGGTCATCGCTCTCGCGCGCCGAACCGATCGATGTTTTCCCTTTGCTCCGTCCATTCGCGCTCGGCTTCTGTATCATGTTCTTCCCGACTATCGTTTTGGGTACGATGAATGCCGTACTCAGCCCCGTCGTACAGGGAACCGAGAAAATGGTGCACGTACAGCAGGACGACCTGCAGGCGTTGCAACTCAAAAGAGACCGGCTGGAAGAGGAAGCCTGTAAACGGGACAAGTCGAGAGCCTATTTGGTGGATGACGAAGCGTGGAATAACAAGATCGAAGAGATGGGTTTTATCGGCCCGGAAGATGCGATTACCCTGGCCGGCATGTATGCCGAACGTACGGCGTTCAACGCCAAGCGCTGGTTTATAAAAAAGGTTTATCAACTGTTGGAACTGCTCTTTCATGCCGTCAGTCTGGTCATCGACACGCTCCGCACATTCTTTCTGATCGTGCTGTCCATCCTGGGGCCGATCGTGTTCGGTATCGCCGTATGGGACGCACTCAGCGGATCGCTGACAGCCTGGTTCAGCCGCTACATCTCCGTCTATCTCTGGCTGCCGGTCAGCAGTATTCTGACAGCACTGCTCACGAAGATACAGATCCTGATGCTCAACAAGGAGATTGCCCAGTTGCAAGACGTGAACTATATGCCCGATTCGGGAAACTGGTACTACATCGTCTTCTTCCTGATCGGCATTCTCGGTTTCTTCAGCGTACCGACTGTTTCGGGATGGATCATCGAAGCGGGCGGCGGTATCGGCAACTACGGCAAGAATGTCAATGAGCAGGCCAAACGGGCCGGAGGAAAGGCATTGACGGGAGGAAAGGCGCTGTCTGCCGCAGGCGGCGCAGTTGTCGGTAATGCTTTGGGACGTTTCAGGGAGCGATTCCGGAAAGGTTCCTCCGGAGGCGATTCCGGCGGTGGAAACACCAACGGAGCATTGACGAAACAACCTAAAACAACGAACAGC","8.30","2.59","40438","MDFANLHELLRSTYEEMMPLCSEMTGIAKGIAGLGALFYIALRVWSSLSRAEPIDVFPLLRPFALGFCIMFFPTIVLGTMNAVLSPVVQGTEKMVHVQQDDLQALQLKRDRLEEEACKRDKSRAYLVDDEAWNNKIEEMGFIGPEDAITLAGMYAERTAFNAKRWFIKKVYQLLELLFHAVSLVIDTLRTFFLIVLSILGPIVFGIAVWDALSGSLTAWFSRYISVYLWLPVSSILTALLTKIQILMLNKEIAQLQDVNYMPDSGNWYYIVFFLIGILGFFSVPTVSGWIIEAGGGIGNYGKNVNEQAKRAGGKALTGGKALSAAGGAVVGNALGRFRERFRKGSSGGDSGGGNTNGALTKQPKTTNS","1555435 1554224 [Bad Olap 1664 122 6]","TIGR ID: PG1479","transfer region-related protein TraJ","Inner membrane, Cytoplasm","One significant hit in gapped BLAST; e.g. residues 1-306 are 56% similar to gbAAG17835.1AF289050_10 TraJ of Bacteroides thetaiotaomicron, a transfer region protein. See BT2599.","
InterPro
IPR012424
Family
Homologues of TraJ from Bacteroides conjugative transposon
PF07863\"[272-340]TCtnDOT_TraJ


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 11:46:09 MDT 2001","","Thu Jun 14 11:46:09 MDT 2001","Thu Jun 14 11:46:09 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:46:09 MDT 2001","Thu Jun 14 11:46:09 MDT 2001","","","Tue May 8 17:43:13 MDT 2001","Mon Aug 6 09:52:05 2007","Wed Mar 7 08:41:29 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 272-330 are 59% similar to PG1198, a hypothetical protein. Similarities are also seen to PG1941.1, PG0941.1, PG0455, PG1563, PG1105.2, PG0787.1, many of which are hypothetical proteins.","Mon Jun 25 14:36:13 MDT 2001","Mon Aug 6 09:52:05 2007","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jun 25 14:36:13 MDT 2001","34541146","","","Xu,J., Bjursell,M.K., Himrod,J., Deng,S., Carmichael,L.K.,Chiang,H.C., Hooper,L.V. and Gordon,J.I.A Genomic View of the Human-Bacteroides thetaiotaomicron SymbiosisScience 299 (5615), 2074-2076 (2003)PUBMED 12663928Bonheyo G, Graham D, Shoemaker NB, Salyers AA.Transfer region of a bacteroides conjugative transposon, CTnDOT.Plasmid. 2001 Jan;45(1):41-51.PMID: 11319931","","Mon Aug 6 09:52:05 2007","1","","13","PG1479" "PG1295","1555988","1555362","627","ATGAAGAACAAGATTTTAATTCTCGGCATGGTACTGGCGGTCTGCTGTGGCAGCGTACATGCCCAGTGGGTCGTGACCGATCCGACCAATTTTGCCGGCAACATCGCCAACACGGTCAAGGAGATCGCAACGGCCTCCAAGACGGTAAAAAACACCCTGAACAACTTCAAGGAAGTGGAGAAAGTCTATCATCAGGGGAAAAAATACTACGACGCGCTCAAGACGGTCAATAACCTGATCGGGGATGCCTACAAGGTAAAAGAGATCATCCTGATGGTAGGCGATATCACGGATATTTACGTCACGGGGTATCGCTCCATGCTCAAAGATCCGAACTACAGTCCGGAAGAACTTTCGGCTATGGCATCGGGCTATGCCAAACTGCTTGAAATGAGCGGTGAGTCGCTCAAGGAGCTGAAAACGCTTCTCAAAAACAATGCCCTGTCGATGAACGACAAAGAACGAATGGAGCTGATCAACCGGATTTATGACGAAGTTCGGGAGTACCGTGCCGTAACCTCTTATTTTACGCAGAAGAACATTTCCGTGAGTTTTGTCCGTGCCGCGGAAAAAGGGGAGCTGGAGCGTGTCAACTCCCTCTACGGTTCGGGTAGCAGCCGCTATTGG","9.40","4.39","23566","MKNKILILGMVLAVCCGSVHAQWVVTDPTNFAGNIANTVKEIATASKTVKNTLNNFKEVEKVYHQGKKYYDALKTVNNLIGDAYKVKEIILMVGDITDIYVTGYRSMLKDPNYSPEELSAMASGYAKLLEMSGESLKELKTLLKNNALSMNDKERMELINRIYDEVREYRAVTSYFTQKNISVSFVRAAEKGELERVNSLYGSGSSRYW","1555988 1555362 [Shorter 1664 609 99]","TIGR ID: PG1480","transfer region-related protein TraI","Periplasm, Cytoplasm","One significant hit in gapped BLAST; e.g. residues 1-209 are 49% similar to gb|AAG17834.1|AF289050_9 TraI of Bacteroides thetaiotaomicron. ","
noIPR
unintegrated
unintegrated
signalp\"[1-21]?signal-peptide
tmhmm\"[5-25]?transmembrane_regions


","BeTs to 3 clades of COG0840COG name: Methyl-accepting chemotaxis proteinFunctional Class: NThe phylogenetic pattern of COG0840 is A--K--VCEB--UJ--OL---Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue May 8 17:47:12 MDT 2001","Wed Mar 7 08:49:46 MST 2001","Wed Mar 7 08:49:46 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 7 08:49:46 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue May 8 17:47:12 MDT 2001","34541147","","","Bonheyo,G.T., Graham,D., Shoemaker,N.B. and Salyers,A.A. Transfer Region of a Bacteroides Conjugative Transposon CTnDOT, Plasmid. 2001 Jan;45(1):41-51, PubMed: .Xu,J., Bjursell,M.K., Himrod,J., Deng,S., Carmichael,L.K.,Chiang,H.C., Hooper,L.V. and Gordon,J.I.A Genomic View of the Human-Bacteroides thetaiotaomicron SymbiosisScience 299 (5615), 2074-2076 (2003)PUBMED 12663928","","Tue Nov 18 16:11:36 2003","1","","13","PG1480" "PG1296","1558540","1556018","2523","ATGAGAAATATCCGTAAGAAATGCGAACTGGAAGAGAAGTTCCCGCTGCTGGCCATCGAGAACGGCTGCATCGTATCGAAAGATGCCGACATCACCGTGGCTTTCTCTCTTGAACTGCCCGAACTCTTTACCGTGACCTCACCCGAATACGCGGCGATGCATGCCGCCTGGCACAAGGCGGTGAAGGTCTTGCCCGTTTACAGCATCCTGCACAAGCAGGACTGGTTTATTCGGGAAAGCTACCGTCCGGAGTTGGAAAAGGACGATCTCTCGTTCCTCGACCGCTCTTACGAACGGCATTTCAACGAACGTCCCTTCCTGCACCATTCCGTCTACCTCTGTCTGACGAAAACGACGAAACAGCACATGGCGCAACGAAGCGATTTCTCGACGCTCTGTCGCGGAACCCTTCTGCCGAAGGAAGTCCGGGAGCGGGATGCCGTCCTGAAATTTCTGGAGGCCGTCGATCAGTTCGAACGGATCATCAACGATTCGGGCTATATGCGCCTCAGACGTCTTTCGGCGGATGAGATCGCAGGCACGGACGACAAGCGTGGCTTGCTCGACCGTTACCTCTCGTTACGCGACGATGCGGCAGGCACGCTCGAAGACCTCCGGCTCGGCGCCGATGAAGTGCGGATCGGGGATCAAATCCTCTGCCTGCATACCTTGTCCGATACGGACGATCTGCCTGCTGCCGTCGCAACGGACGGCCGTTACGAACGGCTCTCCACCGATCGCAGCGACTGCCGGCTGAGCTTTGCCGCTCCCGTCGGGCTGATGCTCCCGTGTAACCATATCTATAACCAGTACCTCTTTATCGACGACAGCGAAGAAAATCTCAAGCGCTTCGAGAAACAGGCGCGAAACATGCTTTCACTTGCACGCTTCTCTCGCTCCAATCAGATCAATCGCGAGTGGATCGAGGAATACCTGAACGTTGCGCACTCCCAGGGACTCGCTTCCATCCGTGCGCATTTCAATGTGCTGGCATGGAGCGACGACCGGGAAGAACTCCGGCAGATCAAAAACGATGTAGGCTCGGCGCTGGCCTTGATGGAGTGCCGTCCCCGTCACAATACGACGGACACGGCTACGCTCTATTGGGCGGGCATGCCCGGCAATGCGGGCGATTTTCCCTCCGAAGAAACATTCTACACCTTTATCGAGCCGGCTCTCTGCTTCTTTACGGCCGAGACGAACTACCGCAGCTCGCTTTCACCCTTCGGCATCAAACTGTCCGACCGCCTGACGGGCAAACCGCTCCATCTCGATATTTCGGACTTGCCGATGAAACGCGGGATTATCACGAACCGCAACAAATTTGTCCTGGGACCGTCCGGTTCGGGAAAATCGTTTTTCATGAACCATCTCGTACGGCAGTATTACGAACAGGGAACGCATGTGTTGCTGGTCGATACGGGCAACTCCTACCAGGGACTTTGTTCGCTCATCCACCGGAAAACGAAAGGTGAAGACGGCATCTATTTTACCTATACGGAAGAGGAGCCGATTTCGTTCAATCCTTTTTATACCGATGACGGGGTGTTCGACGTCGAAAAGAAAGACAGTATCAAAACGCTGCTTTTGACGCTCTGGAAAAGCGAAGAGGAAAAAATATCGAAAACCGAATCGGGCGAGCTCGGCAGCGCTGTCTCGGCCTATATCCGCCTGATCGGTTCGGACAGAGGGATAACGCCGAGCTTCAATACGTTTTACGAATTCATGCGCGATACCTACCGGCCGGAACTGGAAAACCGCGAGATCAAAGTCAGCCGGGAAGATTTCAATATCGACAACTTTCTGACTACGCTCCGCCAGTACTACCGGGGCGGTCGTTTCGACTTCCTGCTCAATTCGGACAAAAACATCGACCTCCTGTCGAAGCGGTTTATCGTCTTCGAAATCGATGCCATCAAGGAAAACCGGGAACTTTTCCCCGTGGTAACCATCATCATCATGGAGGCTTTCATCAATAAGATGAGGCGACTCAAAGGCGTTCGCAAACAACTGATCGTCGAGGAAGCCTGGAAAGCGATCGCCTCGGCCAATATGGCCGACTACCTGAAGTATATGTACAAAACGGTGCGCAAGTATTTCGGGGAGGCAATCGTGGTGACGCAGGAGGTGGACGACATCATCTCTTCGCCGGTGGTAAAGGAGAGCATCATCAACAATTCGGATTGCAAGATTCTTCTCGACCAGCGCAAGTATGCCAACAAATTCGACCAGATACAGAACCTCCTCGGGCTGACCGATAAGGAGAAGTCGCAGATCCTGTCCATCAATATGGATAACGATCCGTCCAGACTCTACAAAGAGGTCTGGATCGGGCTGGGCGGCACGCAATCGGCTGTCTATGCCACCGAAGTCTCGGCCGAAGAGTATCTCTGCTATACAACGGAAGAGACGGAAAAAATGGAAGTGCTGAGGCTGGCAGAAAAATCGGGAGGTCATATCGAACAGGCCATCCGCCAACTGGCCGAAACCAAACGAAACCGACGCAAAGACGTGAACCATATA","5.90","-12.11","96996","MRNIRKKCELEEKFPLLAIENGCIVSKDADITVAFSLELPELFTVTSPEYAAMHAAWHKAVKVLPVYSILHKQDWFIRESYRPELEKDDLSFLDRSYERHFNERPFLHHSVYLCLTKTTKQHMAQRSDFSTLCRGTLLPKEVRERDAVLKFLEAVDQFERIINDSGYMRLRRLSADEIAGTDDKRGLLDRYLSLRDDAAGTLEDLRLGADEVRIGDQILCLHTLSDTDDLPAAVATDGRYERLSTDRSDCRLSFAAPVGLMLPCNHIYNQYLFIDDSEENLKRFEKQARNMLSLARFSRSNQINREWIEEYLNVAHSQGLASIRAHFNVLAWSDDREELRQIKNDVGSALALMECRPRHNTTDTATLYWAGMPGNAGDFPSEETFYTFIEPALCFFTAETNYRSSLSPFGIKLSDRLTGKPLHLDISDLPMKRGIITNRNKFVLGPSGSGKSFFMNHLVRQYYEQGTHVLLVDTGNSYQGLCSLIHRKTKGEDGIYFTYTEEEPISFNPFYTDDGVFDVEKKDSIKTLLLTLWKSEEEKISKTESGELGSAVSAYIRLIGSDRGITPSFNTFYEFMRDTYRPELENREIKVSREDFNIDNFLTTLRQYYRGGRFDFLLNSDKNIDLLSKRFIVFEIDAIKENRELFPVVTIIIMEAFINKMRRLKGVRKQLIVEEAWKAIASANMADYLKYMYKTVRKYFGEAIVVTQEVDDIISSPVVKESIINNSDCKILLDQRKYANKFDQIQNLLGLTDKEKSQILSINMDNDPSRLYKEVWIGLGGTQSAVYATEVSAEEYLCYTTEETEKMEVLRLAEKSGGHIEQAIRQLAETKRNRRKDVNHI","1558750 1556018 [Bad Olap 1667 211 0]","TIGR ID: PG1481","transfer region-related protein TraG","Cytoplasm, Inner membrane","One strong hit and several moderate to weak hits in gapped BLAST; e.g. residues 1-839 are 77% similar to gb|AAG17832.1|AF289050_7 TraG of Bacteroides thetaiotaomicron (BT0093), residues 4-555 are 25% similar to the N-terminal half of gb|AAC45559.1|, a pBF4 gene involved in Bacteroides spp. conjugal transfer of Bacteroides fragilis, residues 260-745 are 22% similar to gb|AAB61935.1| TraC of Escherichia coli.","
noIPR
unintegrated
unintegrated
SSF52540\"[366-756]TSSF52540


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 4-637 are 24% similar to a (BCTA) protein domain (PD217756) which is seen in P70888_BACFR.Residues 605-737 are 62% similar to a (PLASMID PROTEIN VIRB4 ATP-BINDING) protein domain (PD044096) which is seen in P70888_BACFR.","","Thu Jun 14 11:46:28 MDT 2001","","Thu Jun 14 11:46:28 MDT 2001","Thu Jun 14 11:46:28 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:46:28 MDT 2001","Thu Jun 14 11:46:28 MDT 2001","","","Tue May 8 17:50:08 MDT 2001","Thu Nov 20 20:46:08 2003","Wed Mar 7 09:16:49 MST 2001","","Mon Jun 25 15:16:40 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 7 09:16:49 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jun 25 15:16:40 MDT 2001","34541148","","","Bonheyo,G.T., Graham,D., Shoemaker,N.B. and Salyers,A.A. Transfer Region of a Bacteroides Conjugative Transposon CTnDOT, Plasmid. 2001 Jan;45(1):41-51, PubMed: .Morgan,R. and Macrina,F.L. 1996. Isolation and Charactization of 'bctA', a pBF4 gene involved in 'Bacteroides' spp. conjugal transfer. Mol. Microbiol. In press.Morgan,R.M. and Macrina,F.L. 1997. bctA: a novel pBF4 gene necessary for conjugal transfer in Bacteroides spp. Microbiology 143 (Pt 7): 2155-2165. PubMed: 9245805. Xu,J., Bjursell,M.K., Himrod,J., Deng,S., Carmichael,L.K.,Chiang,H.C., Hooper,L.V. and Gordon,J.I.A Genomic View of the Human-Bacteroides thetaiotaomicron SymbiosisScience 299 (5615), 2074-2076 (2003)PUBMED 12663928","","Thu Nov 20 20:46:08 2003","1","","13","PG1481" "PG1297","1558872","1558540","333","ATGTGGGAGATTAACAGGGGAATTGGCCGGACGGTCGAGTTCAAAGGGCTTAAATCCCAATACCTGTTCATTTTCGCAGGCGGGCTGCTGGCGACGTTTATCCTTGTCGTCATCTGCTACATGTGCGGCATGAACCAGTATCTCTGTCTGGGCATGGGCGTATCGGGTGCCACCCTCGTGGTGTGGCAAACGTTCGCGATGAACCGCAAGTACGGAGAACACGGGCTGATGAAACGGGGAGCCGCTCGCCGGCATCCCCGTTACCTGCTCTCTCGCCGTCCTGTCCGCCGTATTCTTTCCGTCCGGGCTGTAACGACAAACGAACCGACGCCA","11.40","12.32","12597","MWEINRGIGRTVEFKGLKSQYLFIFAGGLLATFILVVICYMCGMNQYLCLGMGVSGATLVVWQTFAMNRKYGEHGLMKRGAARRHPRYLLSRRPVRRILSVRAVTTNEPTP","1558872 1558540 [Shorter 1666 211 99]","TIGR ID: PG1482","transfer region-related protein TraF","Inner membrane, Extracellular","One significant hit in gapped BLAST; e.g. residues 2-98 are 63% similar to gb|AAG17831.1|AF289050_6 TraF of Bacteroides thetaiotaomicron.","
noIPR
unintegrated
unintegrated
signalp\"[1-39]?signal-peptide
tmhmm\"[21-43]?\"[47-67]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue May 8 18:29:01 MDT 2001","Wed Mar 7 09:22:32 MST 2001","Wed Mar 7 09:22:32 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 7 09:22:32 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue May 8 18:29:01 MDT 2001","34541149","","","Bonheyo,G.T., Graham,D., Shoemaker,N.B. and Salyers,A.A. Transfer Region of a Bacteroides Conjugative Transposon CTnDOT, Plasmid. 2001 Jan;45(1):41-51, PubMed: .Xu,J., Bjursell,M.K., Himrod,J., Deng,S., Carmichael,L.K.,Chiang,H.C., Hooper,L.V. and Gordon,J.I.A Genomic View of the Human-Bacteroides thetaiotaomicron SymbiosisScience 299 (5615), 2074-2076 (2003)PUBMED 12663928","","Tue Nov 18 16:13:19 2003","1","","13","PG1482" "PG1298","1559178","1558879","300","ATGAAAACACGAAAAACGATGTGTATCGCCCTGTTGCTTACGACGCTCGCAACCGGAGCTTTTGCCCAGGGCAACGGCATGGCCGGAATCAACGAAGCCACCAAGATGGTAACCTCCTATTTCGACCCGGCCACGAAACTGATCTACGCCATCGGAGCCATAGTCGGCCTGATCGGGGGAGTCAAAGTCTACCAGAAATTTTCTTCGGGAGACCCCGATACCAGCAAGACCGCGGCCTCGTGGTTCGGCGCCTGCATCTTTCTGATTGTGGCGGCCACGATTTTAAGAAGCTTTTTCCTG","10.20","4.88","10534","MKTRKTMCIALLLTTLATGAFAQGNGMAGINEATKMVTSYFDPATKLIYAIGAIVGLIGGVKVYQKFSSGDPDTSKTAASWFGACIFLIVAATILRSFFL","1559178 1558879","TIGR ID: PG1483","transfer region-related protein TraE","Inner membrane, Extracellular","One significant hit in gapped BLAST; e.g. residues 1-100 are 80% similar to gb|AAG17830.1|AF289050_5 TraE of Bacteroides thetaiotaomicron, a transfer region protein.","
noIPR
unintegrated
unintegrated
signalp\"[1-22]?signal-peptide
tmhmm\"[9-27]?\"[46-64]?\"[79-99]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue May 8 18:26:39 MDT 2001","Tue May 8 18:26:39 MDT 2001","Wed Mar 7 09:30:16 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 7 09:30:16 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue May 8 18:26:39 MDT 2001","34541150","","","Bonheyo,G.T., Graham,D., Shoemaker,N.B. and Salyers,A.A. Transfer Region of a Bacteroides Conjugative Transposon CTnDOT, Plasmid. 2001 Jan;45(1):41-51, PubMed: .Xu,J., Bjursell,M.K., Himrod,J., Deng,S., Carmichael,L.K.,Chiang,H.C., Hooper,L.V. and Gordon,J.I.A Genomic View of the Human-Bacteroides thetaiotaomicron SymbiosisScience 299 (5615), 2074-2076 (2003)PUBMED 12663928","","Tue Nov 18 16:13:55 2003","1","","13","PG1483" "PG1299","1560072","1559371","702","ATGAAAATCCTTTTACTGACCTCCTGGTTTCTGGTACTGCTACTGCTGTACCTGCGCTTCCAAAGCAAATGGAACATCCGGCGCAGCATGCGCGAAGCGGAGAAAAAGAAGGAATCCGATACCGGTAATTATTCTTCGGACGATGACGATATTCTGGGAAAAACCCGAACGGAATTTCCATCCCGGGGAATGCGGGGGAACGCGAAGGAACCGGATCAAAATCGCAAGGAAAAAGGCGATAGCTTTGCTGTCGGAAAATCATCCGATTCACCCGAAAAGGAGGGAGTCCGGGCAGCAGAAAACGAGGACAGCGAGTTCTATCCTTCCCTGCCGGAAAATGAAACGGATGAGATGCTGGAGGAGCAGGAAGCTCTTTCGCTACTGCTGGATCGGGAGATAGAAGTCTCCACAGACAGCCTTACGGTGAAAGAGCTTCAAAGACTCCGGACGGCTGCCGAGGAGCCGGAGCAGCTTACGGAAACGGACAAAGCACTTGTACGGGAAACGGCCGGCAAGCTGCGTGGAACGGAATTTCTGGAAAAGCTCCGGGCGCACGAACAGTTGCAGCGAGAACGCGGACGGGAGCTGCTGGAATTGCTCAGCCATCCGCCCGAGGAGATGGCGGAAAAAGGCCGTAAAGCGAAAAAAACGGATTCCGCCGCTCCGACAGCAACCGGAGCACAGGACTGGATGGCTTACCTG","4.80","-10.48","26752","MKILLLTSWFLVLLLLYLRFQSKWNIRRSMREAEKKKESDTGNYSSDDDDILGKTRTEFPSRGMRGNAKEPDQNRKEKGDSFAVGKSSDSPEKEGVRAAENEDSEFYPSLPENETDEMLEEQEALSLLLDREIEVSTDSLTVKELQRLRTAAEEPEQLTETDKALVRETAGKLRGTEFLEKLRAHEQLQRERGRELLELLSHPPEEMAEKGRKAKKTDSAAPTATGAQDWMAYL","1560072 1559371","TIGR ID: PG1484","hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
noIPR
unintegrated
unintegrated
signalp\"[1-22]?signal-peptide
tmhmm\"[5-20]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","","Wed Mar 7 09:31:10 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 7 09:31:10 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue May 8 18:24:07 MDT 2001","34541151","","","","","","1","","13","PG1484" "PG1300","1560463","1560080","384","ATGCCCACGATTGAAGAACAGCGCCAAAAGCTGATCGCCGAACAGATCCAAAAGATGGCCGGTACCGATGCTCCGCAGGTCCTTCCCCGCTCTGATGAGAAGAACGGGAAAAAATCATCTCCCGCGGACGATCCCGTCTCCCGTCAGGAGATCACGATGGACGAATACCGGAGCCTGTTTCTCTCTTCCCGTACCGTCGAGAACCGGATGACTTTCTCCTGCGACCGGGAGCTGCTCGAATGCCTGCGCCATATCCTGAACGACTTGAGAGCCAAAACGACCCTCTCGGCCTATATCGGAAATATCCTCTCCGAACATATCGAACAGCACAGGGAGTTGCTAAGCAAAGCCATCGAAAAGAACAGACGGAAAACCCTTATCCCG","8.10","1.63","14776","MPTIEEQRQKLIAEQIQKMAGTDAPQVLPRSDEKNGKKSSPADDPVSRQEITMDEYRSLFLSSRTVENRMTFSCDRELLECLRHILNDLRAKTTLSAYIGNILSEHIEQHRELLSKAIEKNRRKTLIP","1560463 1560080","TIGR ID: PG1485","hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Mar 6 12:27:40 MST 2001","","Wed Feb 21 08:28:23 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 30-126 are 27% similar to PG0745, a hypothetical protein. Similarities are also seen to PG1262, a hypothetical protein.","Tue Mar 6 12:27:40 MST 2001","Tue Mar 6 12:27:40 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue May 8 17:53:45 MDT 2001","34541152","","","","","","1","","13","PG1485" "PG1301","1561259","1560453","807","ATGCAAAAACAAAAGACACTCTCCGAACGGCCGGTACATATCGGCTTCGGGTCGCTCAAAGGCGGCGTAGGGAAAAGCAGTATTGCGGAGATTTTGGCCAGCTACCTCTATTACAGGGAAGGCGTGAATCTCTTCGTCGTCGACTGCGATTTTTCGCAGTACAGTTTCGCCAATCTCCGGGAACGCGACAAAGAAACCGTGCAGAACGGCCGGCCGGCTTTGCTCTCACGGATGAAGAAACATTTCGAGGCTTTCGGCAAGCCCGCTTACCGGATTATCAAAAGCACCTCCGGACAGGCCATGCAGGATGTGCAGGCTTTTATGGAAGCGCGTTCGGCAGAAACGTTCGACCTCGTTTTCTTCGACTTGCCCGGACGGGCGGATGATCCCGATTTGGTCAGTCTGACGGTCGATATGGATTACCTCATTTCTCCGATAGAGCCCGACCGGCAGTCGCTGGTCGCTTGCATGTCCTACGCGCTGGCTGTGCGCGATCTGGGCGTATCGATCACATCGGGCAACATCAAGCAGATCTACATGCTCTGGAACAAGATCGACCGGCGTGTCCATCCGGCGGTCATCGAGTTTTACGACCGGGAGATCGAAAAAGAAGGACTGGGACTGTTCGATACCCGCCTGCCACGCTCATCCCGTTTCAAGAAAGAAATCACGATCGACAACCGGGAGGTTTTCCGCTCCACCTACCTGCCGCCGGACAAAAGCCTGCTCGAAGGAAGCGGCATAGCTGCGCTGGCCGGAGAAATCATCGAAAAATGCCTGCTAAAACCGAAACGCCATGCCCACGAT","8.00","2.07","30452","MQKQKTLSERPVHIGFGSLKGGVGKSSIAEILASYLYYREGVNLFVVDCDFSQYSFANLRERDKETVQNGRPALLSRMKKHFEAFGKPAYRIIKSTSGQAMQDVQAFMEARSAETFDLVFFDLPGRADDPDLVSLTVDMDYLISPIEPDRQSLVACMSYALAVRDLGVSITSGNIKQIYMLWNKIDRRVHPAVIEFYDREIEKEGLGLFDTRLPRSSRFKKEITIDNREVFRSTYLPPDKSLLEGSGIAALAGEIIEKCLLKPKRHAHD","1561259 1560453","TIGR ID: PG1486","transfer region-related protein TraA","Cytoplasm","Residues 13-256 have 34% similarity to Bacteroides thetaiotaomicron TraA, a transfer region protein.","
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[13-207]TG3DSA:3.40.50.300
SSF52540\"[7-221]TSSF52540


","BeTs to 5 clades of COG0489COG name: ATPases involved in chromosome partitioning, mrp familyFunctional Class: DThe phylogenetic pattern of COG0489 is AmtKYqvCEBrhuj------xNumber of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue May 8 17:52:33 MDT 2001","Tue May 8 17:52:33 MDT 2001","Wed Feb 21 08:47:08 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue May 8 17:02:54 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue May 8 17:06:52 MDT 2001","34541153","","","Bonheyo,G.T., Graham,D., Shoemaker,N.B. and Salyers,A.A. Transfer Region of a Bacteroides Conjugative Transposon CTnDOT, Plasmid. 2001 Jan;45(1):41-51, PubMed: .Xu,J., Bjursell,M.K., Himrod,J., Deng,S., Carmichael,L.K.,Chiang,H.C., Hooper,L.V. and Gordon,J.I.A Genomic View of the Human-Bacteroides thetaiotaomicron SymbiosisScience 299 (5615), 2074-2076 (2003)PUBMED 12663928","","Tue Nov 18 16:14:26 2003","1","","13","PG1486" "PG1302","1561611","1561859","249","TTGATGGAAAACAAAGGCTTTCCCGACACGGAGGCAGGCCGTAACTTTGCGCCGGAAAAGCAATCGTCCCCGACCGGCCGGCAGGAAATGAAGATTGTCCGGAAAGAGCGACGGTCGGCCGTCGCTATCGCTTTGGAACGGTTGATCATGGCAAGGTGTACCTTTGTCCGACAACGCGCTGCGAAGCCGACAAAGGTGCCTTGCCCCGGTGCGGGGAAAGATGCTTACTCCGAAGTCGTAAGCAAAGAC","10.70","6.89","9191","LMENKGFPDTEAGRNFAPEKQSSPTGRQEMKIVRKERRSAVAIALERLIMARCTFVRQRAAKPTKVPCPGAGKDAYSEVVSKD","1561611 1561859 [Shadowed by 1674]","TIGR ID: PG1487","hypothetical protein","Periplasm, Cytoplasm","No hit found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","","Wed Feb 21 08:49:19 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Feb 21 08:49:19 MST 2001","34541154","","","","","","1","","13","PG1487" "PG1303","1561910","1561554","357","ATGCCTGTTTTCATTTTTCATAGCATTCGTCAGGTTAAGGTTAAAAAATCAGTCTTTGCTTACGACTTCGGAGTAAGCATCTTTCCCCGCACCGGGGCAAGGCACCTTTGTCGGCTTCGCAGCGCGTTGTCGGACAAAGGTACACCTTGCCATGATCAACCGTTCCAAAGCGATAGCGACGGCCGACCGTCGCTCTTTCCGGACAATCTTCATTTCCTGCCGGCCGGTCGGGGACGATTGCTTTTCCGGCGCAAAGTTACGGCCTGCCTCCGTGTCGGGAAAGCCTTTGTTTTCCATCAAAAGGAATGCAAAGGAATCCGGGGGAACCGGGTCGTAAAAAAGCGCCTGTTCAGCTGT","11.60","17.94","13574","MPVFIFHSIRQVKVKKSVFAYDFGVSIFPRTGARHLCRLRSALSDKGTPCHDQPFQSDSDGRPSLFPDNLHFLPAGRGRLLFRRKVTACLRVGKAFVFHQKECKGIRGNRVVKKRLFSC","1561910 1561554","NO TIGR ID corresponds to this gene.","hypothetical protein","Periplasm, Cytoplasm","No hit found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","13","" "PG1304","1561890","1562288","399","ATGAAAAATGAAAACAGGCATGGTGGCAGTCCGTCCTATCGCTACTATGTCAGACTCAATGAAAAGGACAACAGCCGTTTTCTCGATTTATACGAGAAATCCGGTATCGGAAACAAATCCGAATTTATCCGGCGGAGGCTTTTTCTGACTCCGTTCCGTGTGATTACCCATGACAAATCGGCCGCCGATTATTATACCCGGCTGACCCATATTCATGCCCAAATCCGCAAGGTTGGCGTGCTCTACAATCAGGCCGTCCGCTCCATTAACACGTACCATTCCGTCAAAACGGCGGCCGTTTTGCTGCAAAAGCTGGAGCAATACACCGGAGAACTCCTTGCGCTTCTGGAAGAAACGAACCGGCTCACAGTAGCTTTCGAAGAACGATGGTTGCCGAGA","10.70","9.19","15689","MKNENRHGGSPSYRYYVRLNEKDNSRFLDLYEKSGIGNKSEFIRRRLFLTPFRVITHDKSAADYYTRLTHIHAQIRKVGVLYNQAVRSINTYHSVKTAAVLLQKLEQYTGELLALLEETNRLTVAFEERWLPR","1561890 1562288","TIGR ID: PG1488","hypothetical protein","Cytoplasm","No hit found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Feb 21 08:54:08 MST 2001","","Wed Feb 21 08:54:08 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 17-133 have 42% similarity to PG1263 and hypothetical protein PG0744.","Wed Feb 21 08:54:08 MST 2001","Thu May 31 16:44:07 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu May 31 16:44:07 MDT 2001","34541155","","","","","","1","","13","PG1488" "PG1305","1562276","1563553","1278","ATGGTTGCCGAGATAACCGCTCCGAAAAGCATGGGTAAAGTGTTGGGATATAACTTTTCCAAAGTAACGGCGGGAAACGCCTCCGTCATTCTGACCTCCTCGATGAGCGTGGATGCAAACGGAGAAACGAACTTTGAACGAGCATTGACCGATATGGATATGCGCATCCCGTCGGGTATCCGCACGAAAAAGACGGTGTTTCACTGTTCCCTCAATCCGCATCCGGACGACAGGCTGACAACGGAGCAGTTACAGGACATCGCCCGGGAATACATGGAAAAGATGGGATACGGCAAACAGCCTTACATCGTATTCAAGCACAACGACATCGCGCGCGAGCATATCCATATCGTCTCCCTGCGTGTGGACAGCTACGGGAAAAAGCTGCCTTACAAGTTCGAAGCAAGACGCAGCAAACGGATCACCGATGAGCTGGAGCGGAAATACGGCTTGATACCGAGCGGAAACCGGAGAAGTCGGCACGAGACACATGCGGAGAACGTTTTGAAAACGGCGGATGTAAAGCAGGGCGATGTGCGTCGGCAGATTGCCGCTGTGGTTCGGGCGGTGCTGAAACGGTACGCTTTCCGGTCGTTGGGTGAAATGAATCTGCTGTTGGCCCGATACCACATCGTTGCGGAGGAAGTTCGTAAGGAGTACAAAGGGAAGCGGTACGACGGGTTGGTATACGCCATTACGGATGATGCGGGAGAGAAACGGATGATACCCTTGCATGCCGGTAAAATAGGGAGAGGGACAGGCTATGCCGCCGTTGTGCGTCATTTTGAGAAATCCAAAGCGCTTATAAAAGAGAAGGCGCCGATGCTTCGCAATGCCATCATCGAGGTCATGCAGTCATCCCCCGATAAAGAACGGTTTTCGGAGGAGATGAAAAAACGAGGTATCGACGTGCATATCCGCCAAAACGAGCAGGGACGTATTTACGGCATCACGTTTATCTCGGACGAAGCCGGTATCGCTGCCAATGGCTCGCGCTTGGGGAAGGGCTATTCGGCCCATGTCTTTAACGATTACTTTCTCGGGGGTGAGAATCCCTTCCTTGATTACAGGCGGCAGGAGATTCGGGAGCTTCCCACAGTGCGTTCTGCTCCGGAGATGTTGCCGGAAGCTGAAACCGGCGATGATTGTTACGATGAGCCGGTCAGAACGGATGAGTCGGGAATCGTCGTTCACGGGATCGATTATAAGGAGCTGGCTTTCCAGCGAAAGCTGAGAAACAGGCGGCATAAACAGGATATAACCGGAAAAAGAAGAACA","10.40","19.31","48625","MVAEITAPKSMGKVLGYNFSKVTAGNASVILTSSMSVDANGETNFERALTDMDMRIPSGIRTKKTVFHCSLNPHPDDRLTTEQLQDIAREYMEKMGYGKQPYIVFKHNDIAREHIHIVSLRVDSYGKKLPYKFEARRSKRITDELERKYGLIPSGNRRSRHETHAENVLKTADVKQGDVRRQIAAVVRAVLKRYAFRSLGEMNLLLARYHIVAEEVRKEYKGKRYDGLVYAITDDAGEKRMIPLHAGKIGRGTGYAAVVRHFEKSKALIKEKAPMLRNAIIEVMQSSPDKERFSEEMKKRGIDVHIRQNEQGRIYGITFISDEAGIAANGSRLGKGYSAHVFNDYFLGGENPFLDYRRQEIRELPTVRSAPEMLPEAETGDDCYDEPVRTDESGIVVHGIDYKELAFQRKLRNRRHKQDITGKRRT","1562276 1563553","TIGR ID: PG1489","mobilization-related protein","Cytoplasm","Residues 1-411 have 36% similarity to AF289050, B. thetaiotaomicron unknwon protein.","
InterPro
IPR005094
Family
Relaxase/mobilization nuclease
PF03432\"[7-349]TRelaxase


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 61-151 are 41% similar to a ('MOCA') protein domain (PD131506) which is seen in Q56424_BACFR.Residues 58-150 are 30% similar to a (PTF4.1 PLASMID, COMPLETE GENOMIC) protein domain (PD139864) which is seen in Q56294_THIFE.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Feb 23 18:23:34 2005","Wed Feb 21 09:03:46 MST 2001","Wed Feb 21 09:03:46 MST 2001","","Wed Feb 23 18:23:34 2005","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1-145 show 27% similarity and 252-418 show 26% similarity to PG0778 .","Wed Feb 21 09:05:55 MST 2001","Tue Nov 18 16:14:57 2003","No significant hits to the PDB database (E-value < E-10).","","","Residues 7 to 349 (E-value = 5.1e-05) place PG1305 in the Relaxase family which is described as Relaxase/Mobilisation nuclease domain (PF03432)","Tue Nov 18 16:14:57 2003","34541156","","","Xu,J., Bjursell,M.K., Himrod,J., Deng,S., Carmichael,L.K.,Chiang,H.C., Hooper,L.V. and Gordon,J.I.A Genomic View of the Human-Bacteroides thetaiotaomicron SymbiosisScience 299 (5615), 2074-2076 (2003)PUBMED 12663928","","Tue Nov 18 16:14:57 2003","1","","13","PG1489" "PG1306","1563558","1565564","2007","ATGCAGAATGAAGATGATTTGAGAGGACTGGCCAAGACGATGGACTTTATGCGCGCCATCGCCATCCTTTTTACGGTAATCAACGGCTACTGGTTTTGTTACGAGGCTTTACACGAATGGAAGATTACCATAAGCGTTGCAGATACCATCCTGATGAACTTTCATCGCACGACGGGGCTTTTTTCTTCCATCCTTTGGACAAAGCTCTTTGCTGTGGTATTCCTCGGACTTTCCTGTCTGGGAACGAAAGGTGTCAAGGAAGAACGGATCACCCGGCGCAGGATCGGGGTCGTATTGAGTGCCGGAGCAGCTCTCTATCTGCTGAACGGATGGATACTGAGCCTGCCGGTCGGCATAGACCTTCGGGCTGTCTGCTACCTCCTTACACTGAGCGCAGGATTTATCTGTCTGCTGATGGCCGGCTCCTGGATCAGCCGCCTGTTGAAGCACAACCTGATGGACGATGTATTCAATGTGGAGAATGAAAGTTTCATGCAGGAAACCCGTCTGATGACGAACGAGTATTCGGTGAATCTCCCGACTCGTTTTTATTACCGGAAAAAGTGGCGCGACGGTTGGATCAATGTCGTGAATCCTTTCCGCGCGAGCATGGTGCTCGGTACGCCGGGGTCGGGAAAATCCTACGCGATCGTAAATAACTACATCAAGCAACAAATCGAGAAGGGATTTGCCATGTATATTTATGACTATAAATTCCCCGACCTTTCCGAGATCGCTTACAACCATCTGCTCAGACATCGGAAGGCGTATGAAGTGCAGCCGAAGTTTTACGTAATCAACTTCGATGATCCCAGAAGATCGCATCGCTGCAATCCGATCAATCCGGATTTTATGTCCGACATATCGGACGCTTACGAATCGGCGTATACGATCATGCTGAATCTGAACCGCACATGGATTCAGAAGCAGGGGGATTTCTTTGTGGAGTCGCCGATCATCTTGCTGGCGGCTATTATCTGGTTCCTGAAGATATATGAGAACGGCAGGTATTGCACCTTTCCGCATGCCATCGAGTTTCTGAACAGACCTTATGCGCAGATCTTTCCGATTCTGACTTCTTACGATGAGCTGGCCAACTATCTTTCACCCTTTATGGACGCATGGGAAGGCGGCGCACAGGATCAACTTCAGGGACAGATCGCTTCGGCCAAGATTCCGCTTTCGAGGATGATTTCTCCGGCACTTTACTGGGTAATGACGGGCGATGACTTCTCGCTCGACATCAATAACCCGAAAGAACCGAAAATCCTGGTGGTGGGCAACAATCCCGACCGACAAAATATCTATTCGGCGGCACTCGGTTTATACAACAGCCGGATCGTGAAACTGATCAATAAAAAGAAGCAGCTCAAAAGCTCGGTGATTATCGATGAGTTGCCCACCATCTACTTCCGAGGGCTGGATAACCTGATTGCTACGGCTCGTTCCAATAAAGTGGCAGTCTGTCTGGGCTTTCAGGATTTCAGTCAGCTTACCCGCGATTACGGAGACAAGGAGAGCAAGGTGATTCAGAACACGGTGGGAAATGTTTTCAGCGGTCAGGTCGTAGGTGAAACGGCCAAGACGTTATCGGAACGCTTCGGGAAAGTTTTGCAACAACGCCAATCCATGACGATTAACCGAAACGACAAATCCACCTCCATCAGTACGCAAATGGACAGCCTTATCCCGGCCAGCAAGATCAGCAACCTGACGCAAGGGATGTTTGTCGGGGCCGTTTCGGACAATTTCGATGAACGCATCGAACAGAAGATATTCCATGCAGAGATTGTCGTGGATAGTGCGAAGATTTCCGCAGAAACAAAAAGCTATAAACCGATCCCTGTGATTGCAGCGTTTACGGATGAGTCGGGACAGGACAGCCTCAAAGCATCCATTGATGCCAACTACAAGCAGATAAAGCAGGAGATTCTGGCACTGGTCGATGTAGAAATTGAGCGGATTGAGAAAGATCCTGAACAATCCGGATTGCTCAGGAAAAATTCA","8.10","4.64","76141","MQNEDDLRGLAKTMDFMRAIAILFTVINGYWFCYEALHEWKITISVADTILMNFHRTTGLFSSILWTKLFAVVFLGLSCLGTKGVKEERITRRRIGVVLSAGAALYLLNGWILSLPVGIDLRAVCYLLTLSAGFICLLMAGSWISRLLKHNLMDDVFNVENESFMQETRLMTNEYSVNLPTRFYYRKKWRDGWINVVNPFRASMVLGTPGSGKSYAIVNNYIKQQIEKGFAMYIYDYKFPDLSEIAYNHLLRHRKAYEVQPKFYVINFDDPRRSHRCNPINPDFMSDISDAYESAYTIMLNLNRTWIQKQGDFFVESPIILLAAIIWFLKIYENGRYCTFPHAIEFLNRPYAQIFPILTSYDELANYLSPFMDAWEGGAQDQLQGQIASAKIPLSRMISPALYWVMTGDDFSLDINNPKEPKILVVGNNPDRQNIYSAALGLYNSRIVKLINKKKQLKSSVIIDELPTIYFRGLDNLIATARSNKVAVCLGFQDFSQLTRDYGDKESKVIQNTVGNVFSGQVVGETAKTLSERFGKVLQQRQSMTINRNDKSTSISTQMDSLIPASKISNLTQGMFVGAVSDNFDERIEQKIFHAEIVVDSAKISAETKSYKPIPVIAAFTDESGQDSLKASIDANYKQIKQEILALVDVEIERIEKDPEQSGLLRKNS","1563558 1565564","TIGR ID: PG1490","probable mobilization protein C","Inner membrane, Cytoplasm","There are two strong hits using gapped BLAST with Bacteroides genes, one with the N terminal domain, the other with the C terminal domain. Residues 2-233 show 68% similarity to AF289050, B. thetaiotaomicron unknown protein.Residues 204-581 show 24% similarity to AF118243, B. fragilis mobilization protein C.","
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[148-587]TG3DSA:3.40.50.300
SSF52540\"[191-584]TSSF52540


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 204-445 are 26% similar to a (MOBILIZATION PROTEIN C) protein domain (PD215584) which is seen in Q9ZF54_BACFR.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Fri Apr 6 17:12:06 MDT 2001","Fri Apr 6 17:12:06 MDT 2001","Wed Feb 21 09:13:05 MST 2001","","Wed Feb 21 09:13:05 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Apr 6 17:12:06 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 171 to 614 (E-value = 7.5e-06) place PG1306 in the TRAG family which is described as TraG/TraD family (PF02534)","Fri Apr 6 17:12:06 MDT 2001","34541157","","","Franco,A.A., Cheng,R.K., Chung,G.T., Wu,S., Oh,H.B. and Sears,C.L., Molecular evolution of the pathogenicity island of enterotoxigenic Bacteroides fragilis strains, J. Bacteriol. 181 (21), 6623-6633 (1999), PubMed: 10542162.Xu,J., Bjursell,M.K., Himrod,J., Deng,S., Carmichael,L.K.,Chiang,H.C., Hooper,L.V. and Gordon,J.I.A Genomic View of the Human-Bacteroides thetaiotaomicron SymbiosisScience 299 (5615), 2074-2076 (2003)PUBMED 12663928","","Tue Nov 18 16:15:29 2003","1","","13","PG1490" "PG1306.1","1565564","1565839","276","ATGAGTATTTCGATGCTATCGGTTAGGACGGTACATGGCAATCGAATCTCCATAACTTACAAGGGTGAAATCCGTATTACGAATTATGAACGGACGCTCTGTTGCGATCGGAGCCGATATGGTGGAATACACGGCACAACCGGAGTCTATGTAATCCGTATCACAAAAGATTTTTTACAGTCTCAGAAGTTTGGTGTCACCGCTATTGGATTTTTATGCCGAAATATTTGGCTATATGCAATTTTATGGTTACTTTGCGCAGCAAAGGAAAGCAAG","","","10491","MSISMLSVRTVHGNRISITYKGEIRITNYERTLCCDRSRYGGIHGTTGVYVIRITKDFLQSQKFGVTAIGFLCRNIWLYAILWLLCAAKESK","","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
tmhmm\"[66-86]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG1307","1566193","1566906","714","ATGGCCAGATTATTTTTTGCAATATTTTTAATGATGAGCGCTTTGCCAAGTTTCTCGCAGTCTAAAGCTGTGACGGTTTCTTATTCTTTTGAAATGAAGATTCCTGAAAAAATAAAACAAATCGAGAATGAACAAATTCGAAAACTTGCAATACAAAAAATGCAAGAAAAAAGTCAGGAATACACGATGTATTTCCATGATGGACTTTATGGATTCTCTGCTCTTTCGGAGGCTTTTCAAGGAAAAAACTTTATTGTCGGAGGAGAACGAAGTGTTTTTTTAGACATGAAGAAGCGAGAACGTGTGTCCCAAGAGGGTATTATGGATAAAAAATTCATCGTAAAAGAACCCTTTGCAACTTTAACGTGGACGATTGGTAAGGAGACAAAGGTTATTTTAGGTAAAACTTGTTTGAAAGCTATTACTCATATTGATAAGATGCCTATTACTGCATGGTTTTGTGAAGAGATTCCTATACAAATAGGCCCGGCTGGGTACTGTGGTTTACCAGGTTTAATCATGGAGATAGAAAGCGGTAGTTTTGTTTACTCGGCACGGAAAGTTGAGTACACAGCTTCAATTTTAAAGATTACACCGCCTTCAAAAGGGGAAGTTTTGAGTCGGGAAGAGTTCATAAAACTGAGAGAGAAAAAAATGAAAGAAATAGGAGTGGATCCCAAACATCAGCCGGGAGGTATTCAAATCATAAAAATG","10.00","8.59","27070","MARLFFAIFLMMSALPSFSQSKAVTVSYSFEMKIPEKIKQIENEQIRKLAIQKMQEKSQEYTMYFHDGLYGFSALSEAFQGKNFIVGGERSVFLDMKKRERVSQEGIMDKKFIVKEPFATLTWTIGKETKVILGKTCLKAITHIDKMPITAWFCEEIPIQIGPAGYCGLPGLIMEIESGSFVYSARKVEYTASILKITPPSKGEVLSREEFIKLREKKMKEIGVDPKHQPGGIQIIKM","1566193 1566906","TIGR ID: PG1492","hypothetical protein","Cytoplasm, Periplasm","This sequence corresponds to gi:34397475 in Genbank.","
noIPR
unintegrated
unintegrated
signalp\"[1-21]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Feb 21 09:22:24 MST 2001","Tue Mar 8 10:57:20 2005","Wed Feb 21 09:22:24 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No signifcant hits found using local BLAST.","Wed Feb 21 09:22:24 MST 2001","Tue Mar 8 10:57:20 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Feb 21 09:22:24 MST 2001","34541159","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Tue Mar 8 10:57:20 2005","","1","","","PG1492" "PG1308","1566926","1569598","2673","ATGCACATCTTTGGATATGTTGCACGAAATGTTCTTTTTGTTTTATTCGGATTGATATTCGGATATGAGGTTTCATATGCACAGACAATTACGATAAAAGGACAAGTGCTTGATGAAAAAAAACAACCTGTCTCATATGCAAGTGTTGTTATCTCAACGGATAGTTTATCTAAAAAAGACATTTCCTATGCTGTAACGGATGAGCATGGGCAATTTAGGATAGGACAACTTTCGGCTATTCCTGACAAGAGATGGATTCATGTTCGTTCAATTGGCTACTTGGGATTTCATAAACAAATTTCTCTTAGGGCAGTTAAGTCACCTCTCGATATAACTCTTACAGAAGACACAAAAGAGTTGGAAGAGGTTGTTGTTGTGGCAAGAGCACGTGATGCTTATGCTAAAGGAGATACAATTGTTTTTAACAGCAAGAATTACACACTGGGGAATGAACGTAATCTTGGGGATGTAGTAAAAAAGATGCCTGGCATGGAAGTTGACCAGACAGGAAATATCTCATATCAAGGAAAGAAAATTGGAAAGGTCTTGGTTGACGGGCAGGATATTTTATCCTCTTCTTCCGGTGTTGCCATGAATACGCTTCCTCCTGATTTTGCCAATTCGATAGAATTGCTTTCGAATTATACGGATGGTGATATTGCCCATGCTTTCAAGGCAGAAGAACAATTAGCCCTCAATCTGAAGTCCAATAAAAAAGTTGCTTTAAGCGGTTCTTTTGAAGGCGGAGGCGGCCTGAAAGACAAATTTATCAGCAAAGCATCTTTGATTACAGTCTTACCAAAAATATCTGCCAGTACCATCATTAACGCCAATAATACAGGTGAGGCTGTTTTTTCGATTCAAGATTATATGTCGAATATCATAGACTTTGAATCGATCCGAAGTGGAGCTTCAACGCAGACATCTTTAAGTTTATCTCCTGAAGAACAACAACTCTTACTGCCTCCGACGAATGAACATGCACGTACGGCAGGATTAGCAAACATAAATATATCATGGACCCCTCACTCAAGCTACAAACTCAGAGCAAGTACACTGTTCAACAAAGGTAAATCAGAAGGGGCGCATACAAAGACGGATACATATACTTTGCCGGAGAATTATTTTACAAATATATCAACAGGTACTGCCGATAAAGAGACCCAACTTGTATCTCAATATTTGTCTCAGAAATGGATTCCTTCTCGTTTTTTCTCTGTCAGTGCTAAGACAAAGATAGACATACGAAACCATAATGCCGATAATATCTATGCTAATACATTCAATGATAATCATATCCATGCATTAGAAAAGCCGAAAAATCACTTTTCCGGTATCAAACAGGATATTGAGATGAAATGGCTTTTGAGCAAAGGGCTTCTTTTCGGTGGAGGAAGTTTTGTTTTCAACAAAGGAAAGATCAATAGTGATATATATACCGATGTCTTACTGCTTCCATTACCCCATATAAATGGAAATTCTATTTATCCTTATTTTCATGAACACATAAAAAAAGACATGGAAAAAGGATTCAACGCCTACGTAGGTGGAATGTATCCTGTATTGAATAATATATATCTGCGAGGTGAGTTTTCCATGTCGATGAATTGGAATGAACTTAAGATGGCTTATCCTACGAGTATAAACGAGGAAACAGCCGATTTAAGAGTATTCAGGCCTTACATTAGTCTGATGAAAAACAAGGGGGTATTCCGGTTTAACATAGGCTCTTATTTTTCCTCCTATAGACAAAAAACATCTCCGGAACTATTGAGAGAGAAATCTCTTTTTTATATTGAGCCACATGCTTCAATCGAATTAGTAATGAGTAACCAGCATCGGTTAATGCTGTCTGTCTCTGAAGCTGTTTCTCCTTCAACCATCGATTACTTTTCTCAGCAGATTTTGGCTAAAGGATACAATAACCTCCAATTACCCTCAAAATTATCGAACCCTTTTGCAAAAAGGTTTAAGGGAAACTTATCCTATGCCTATTTCAGCTTGTTTAACCGGCTTTCGATGTATGGCAATTTAAGTTATATCAAGGATAGAGATACGCATATTACCGTCACAACCTCAAAGGGACTATTGATCAGTAATTTTTATCAAGATGGAGGATGGAGCAATACATTAAGAACAAACGCCTATTTGAGTAAGGGAATCGGCACCCTTCCATTGGACATAAAATTATCAGGTAAATATACGCTCAGCAAACACAACCTGATGCGTGTAGATAAAGAAGACGAATTAATTAACAAAAGAGTAGATGCGAAATTGGATCTTATTTCACGGCTGTACCAATCTCCGGTTAATTTTGAGATAGGAGTACGTTTTAGTCGTCTTGACCAGAAATTTACGTACAGCAATATCCACTCTTGGAATCAAGAATTTGGAGGTTTCGCAACAACTCATGTAAATATAGGAAATTTTGTTTTTTCTGTTTCTGGCAAGTCGAATAGAATTGAAGATGCCGAAGCCAAGCGCTATTTTAGGGATTTGGACTTCTCTCTGAAATACAAATTAAGCAAGTTAGACATCAAATTGCAAGGAGAGAATGTGTTCCATCTTAAAGATAATGAATGGATGAAAGAAATCCTTACCCCGACAGTCCAATCAACTATCCTATACAGACGATTGCCTGGGCATATTCTTTTGTCTCTCAGTTATACATTA","10.00","21.60","100461","MHIFGYVARNVLFVLFGLIFGYEVSYAQTITIKGQVLDEKKQPVSYASVVISTDSLSKKDISYAVTDEHGQFRIGQLSAIPDKRWIHVRSIGYLGFHKQISLRAVKSPLDITLTEDTKELEEVVVVARARDAYAKGDTIVFNSKNYTLGNERNLGDVVKKMPGMEVDQTGNISYQGKKIGKVLVDGQDILSSSSGVAMNTLPPDFANSIELLSNYTDGDIAHAFKAEEQLALNLKSNKKVALSGSFEGGGGLKDKFISKASLITVLPKISASTIINANNTGEAVFSIQDYMSNIIDFESIRSGASTQTSLSLSPEEQQLLLPPTNEHARTAGLANINISWTPHSSYKLRASTLFNKGKSEGAHTKTDTYTLPENYFTNISTGTADKETQLVSQYLSQKWIPSRFFSVSAKTKIDIRNHNADNIYANTFNDNHIHALEKPKNHFSGIKQDIEMKWLLSKGLLFGGGSFVFNKGKINSDIYTDVLLLPLPHINGNSIYPYFHEHIKKDMEKGFNAYVGGMYPVLNNIYLRGEFSMSMNWNELKMAYPTSINEETADLRVFRPYISLMKNKGVFRFNIGSYFSSYRQKTSPELLREKSLFYIEPHASIELVMSNQHRLMLSVSEAVSPSTIDYFSQQILAKGYNNLQLPSKLSNPFAKRFKGNLSYAYFSLFNRLSMYGNLSYIKDRDTHITVTTSKGLLISNFYQDGGWSNTLRTNAYLSKGIGTLPLDIKLSGKYTLSKHNLMRVDKEDELINKRVDAKLDLISRLYQSPVNFEIGVRFSRLDQKFTYSNIHSWNQEFGGFATTHVNIGNFVFSVSGKSNRIEDAEAKRYFRDLDFSLKYKLSKLDIKLQGENVFHLKDNEWMKEILTPTVQSTILYRRLPGHILLSLSYTL","1566926 1569598","TIGR ID: PG1493","conserved hypothetical protein","Outer membrane, Cytoplasm","This sequence corresponds to gi:34397476 in Genbank.Its nearest neighbor in the NR database is gi:53712038 from Bacteroides fragilis YCH46.","
InterPro
IPR008969
Domain
Carboxypeptidase regulatory region
SSF49464\"[31-116]TCarboxypepD_reg
noIPR
unintegrated
unintegrated
SSF56935\"[120-212]TSSF56935


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Mar 8 11:01:03 2005","Tue Mar 8 11:01:03 2005","Wed Feb 21 09:27:07 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 27-303 show 29% similarity to PG1496 (P = 6e-30).","Wed Feb 21 09:27:07 MST 2001","Tue Mar 8 11:01:03 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Feb 21 09:27:07 MST 2001","34541160","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Tue Mar 8 11:01:03 2005","","1","","","PG1493" "PG1309","1569984","1571294","1311","ATGGATGAAGCCGGCCGGGTCAAGACCGTCGAACCGACAGAAGCCAATCAAACGGCTTTCATGAAATTCAAGAAGAACGACAGCGTACTCAAAAACTTCCTGTCGAATTTAGTCAAGCAGTTCAAAGCCCCGACCCATTTCGGAGTATACCGCCTGGTTTCCGACCGTGCCGTCGAGTCGGTAGCCGAACTGAGAAACATGCTTGCCGGACGTGAGGAACCTCGGAACAAGGCTATGCTGGAAAGTATCCGGATGAATCTCGACGAGTTTGCTCCGGCACAGAAAGCACCCGCCATCGACGAGTCCAAAGTCGACTGGAAAGAGTTGGAACGTCTCGGATTGAGTCGTGACCGGCTCGAACAGTCCGGCGACCTGAACAAATTGCTCAACCGGCAGAAAACGGGTCTGGTTGGAATCTCCGTTCCTTTCGGAGAAACCTCCATCTATACCGAAGCACGCATCGCTCTGCGTCAAAGCGAAGACGGCAGTCTGGGGCTGGCCATCCACAGCATCCGCAAAGAGCCGCGGCTCGATTTTCCCTATATGGGCTATCGTTTCAGCGAGGACGAAAAAGCGACGCTGCTGCATTCGGGCAATCTGGGGAAACAGGTGGAGCTGACCCCCAAAAACGGCGAACCCTTCAAAGGCTACGTCTCAATCGACCCGTTGACCTATGAGCTGGTCGCCCTTCGTGCCGACCGCGTGATCATTCCGCAAGAGATTAAAAGCGTCTTGCTGACCGAACAGCAGCATCGGGACCTGACCGAAGGTAAGCCCGTGAAAGTAGAAGGTATGCTCTCGCGTGGCGGCAAACCGTTCGATGCCACGCTTCAGGTCAATGCCGAGAAAAGAGGCATCGAGTTTATCTTCAACGACAACCTTTCCTTCAAAGAACGCAGGCAACTCTCTCAAAAGCCGCAGGCAGATTCTCCGTATGGCGTGCCGGCAACCCTCTGCAAGTATCAGCTGACCGAGAGACAGCAGAAAGCCCTTTCGGAAGGACGCACCCTGTATCTGAAAAATATGGTGGATAAGGAAGGCGAAATCTTCAGTGCCTATGTCCGTTACGACAAGGAGCAGCAGCGTCCCCGTTTTTATCGCTATAATCCGGACCAAAAGCAGGAACAGGTCAAAGCCGTGGCCGAAGGGCACAAGACGCAGGTAGCCGTCAACAATGAAGGTAAGACGAACGAAGCTACCGGGCGCGTCAAGGAGCCCCTCAAAAGCGGTCAGGTACGCCCTACCGAAAAACAACAGGCAAAACAGGAGAACGAAGAGCAGAAGCAGCCTCGCAAAAGAGGGCGCAGGATG","10.20","13.21","49877","MDEAGRVKTVEPTEANQTAFMKFKKNDSVLKNFLSNLVKQFKAPTHFGVYRLVSDRAVESVAELRNMLAGREEPRNKAMLESIRMNLDEFAPAQKAPAIDESKVDWKELERLGLSRDRLEQSGDLNKLLNRQKTGLVGISVPFGETSIYTEARIALRQSEDGSLGLAIHSIRKEPRLDFPYMGYRFSEDEKATLLHSGNLGKQVELTPKNGEPFKGYVSIDPLTYELVALRADRVIIPQEIKSVLLTEQQHRDLTEGKPVKVEGMLSRGGKPFDATLQVNAEKRGIEFIFNDNLSFKERRQLSQKPQADSPYGVPATLCKYQLTERQQKALSEGRTLYLKNMVDKEGEIFSAYVRYDKEQQRPRFYRYNPDQKQEQVKAVAEGHKTQVAVNNEGKTNEATGRVKEPLKSGQVRPTEKQQAKQENEEQKQPRKRGRRM","1569888 1571294","TIGR ID: PG1494","hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 11:46:54 MDT 2001","","Thu Jun 14 11:46:54 MDT 2001","Thu Jun 14 11:46:54 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:46:54 MDT 2001","Thu Jun 14 11:46:54 MDT 2001","","","","","Thu Jun 14 11:46:54 MDT 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Jun 14 11:46:54 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Jun 14 11:46:54 MDT 2001","34541161","","","","","","1","","","PG1494" "PG1310","1571386","1573476","2091","ATGAAATGTATCATTGCCGAGAAACCCTCGGTCGCCCGCGACATAGCCCGCATCGTCGGTGCAACGCACAAAGAAGAGGGCTGTTTCTCCGGAAACGGCCATGTGGTTACCTGGGCCTTCGGACACCTCGTTACCCTTGCGATGCCCGAAGCATACGGCTTTCCGACGTACAGCCGCGAGCAACTGCCCATTATCCCCGAACCTTTCCGGTTAGTCGTCCGACAGATCCGCAAAGGAACGACCTATACGGACGACCCGTCCGCCTTGAAGCAACTCAATATCATCCGCAAGTGTTTCGACCGAAGCGATCACATCATCGTCGCCACCGACGCCGGACGCGAAGGCGAGTTGATCTTCCGCCTGATCTATGCTTATTTGGATTGCCGCAAACCTTTCGACCGCCTGTGGATCAGCTCCCTCACCGATAAGGCTATCCGTGAGGGACTGTCCCGTCCGGCTGACGGCCGGCAGTACGACCGCCTTTATCTCTCGGGCAAGGCTCGCAGTGAAGCCGACTGGCTTGTCGGTATCAATGCCAGCCGCGCCCTCTCCATCGCTCGCGGAGGCGCTTATTCCCTGGGAAGAGTACAGACACCGACTCTGTCGATGATTTGCCGCCGCTATATCGAGCACCGGGATTTCCGGTCCGTACCGTTTTGGAAAATCCATGCGCTGCCCACCGGCCTCTCCGTCAAGGCCATCGGAGAAACGACATACGAAAGCCGCAGAGCAGCGGACAGGGCGATGAAAGATCTGGATCCGCGCGAAGCACTCATCGTTTCGTCCGTTTCCGTACAAACGAATCCTGTGCCACCACCTTTACTCTACGATCTGACTGCCCTTCAGAAAGAAGCCAACAAGCGATACGGATATACGGCGGAAAAGACGCTCTCTCTGGCCCAAAGCCTGTACGAGAAAAAGTGTACCACCTATCCCCGTACAGGCAGCCGGTATATCAGCGAAGACATCTTTGAAGAGATCCCTTCGCTATTAGAAAGTCTGAAAGATGATCCCGATTATGGCGATTACGTCGAAAAGCTCACTGCCGGTACACTTAACCGCCGGAGCGTGGACGATACGAAAGTAACCGACCACCATGCCATTCTCCTTACCGGAGAAAAGTCCGACAGCCTGACCCGCGACGAAGAGGTGCTCTACCGAATGGTCACCGTGCGTATGCTGGAATCCTTTTCCGAAGCGGCCATCGAAGAAACGCTGACGGCGATACTCTCTCAAAGGGAGCATCGTTTCGGGATAAAGGCGAAGAGACGGGTTAAGTCGGGCTGGAAAGCCATCCGCGGATCGATGGAAGAGCCTGTAGAAGAAGGAGAAACCGTTGTGGACAGCTTTCCCGAATGGCAGGAAGGCGACCGGCTCGATGTTTTCGGATTCGAAATGACCGAACATCAAACAAAGCCCAAGCCCCTTTATACGGAAGCCATGTTGCTGTCGGCCATGGAGCACGCCGGACGGGAAGTTGCGGACGAAGAAGCCCGCAAAGCCCTCGCCGGTTGCGGCATCGGTACGCCTGCCACACGTGCGGCCATCATCGAGACATTGATCCTGCGAGAATATATCCGCCGGGAGAAGAAGATGCTTATCCCGACCGAAAAAGGTCTTTCCGTCTATAAACTGGTCGCCGGACGAAAGATCGCCGACGCCGAAATGACGGGAGCATGGGAAGTCGCTCTGGCTGCCATTGAAGCAGGCGCCATGGACGAACGGACATTCGGGAAGAGCATCGAAGTTTATACCCGTCAAATATGCGAAGAACTGCTGACGACAGCCGCCGGAAACACGGATGCTCATTACAAAACTTACCGCTGCCCGCTATGCGGGAACGATTCGGTACGGGTGTTTCCCAAAATCGTCAAATGCGTAACGGATGGTTGTGGGTTCAAAGTCTTCCGGGAGCTTTGCGGCACCCTCCTGAGCAAGGAATATATTCATGCCCTGATGACTGACGGATGCACTCCGCTACTCTGTCGGCTGACCGGCAAATCGGGAAAAACCTTCAATGCCCGCCTGAAGCTCGACAAAGATGGCGGCACCTCCTTCGTCTTCGATTCCAAACCCCGTAAACCTCAAACA","8.00","7.50","78166","MKCIIAEKPSVARDIARIVGATHKEEGCFSGNGHVVTWAFGHLVTLAMPEAYGFPTYSREQLPIIPEPFRLVVRQIRKGTTYTDDPSALKQLNIIRKCFDRSDHIIVATDAGREGELIFRLIYAYLDCRKPFDRLWISSLTDKAIREGLSRPADGRQYDRLYLSGKARSEADWLVGINASRALSIARGGAYSLGRVQTPTLSMICRRYIEHRDFRSVPFWKIHALPTGLSVKAIGETTYESRRAADRAMKDLDPREALIVSSVSVQTNPVPPPLLYDLTALQKEANKRYGYTAEKTLSLAQSLYEKKCTTYPRTGSRYISEDIFEEIPSLLESLKDDPDYGDYVEKLTAGTLNRRSVDDTKVTDHHAILLTGEKSDSLTRDEEVLYRMVTVRMLESFSEAAIEETLTAILSQREHRFGIKAKRRVKSGWKAIRGSMEEPVEEGETVVDSFPEWQEGDRLDVFGFEMTEHQTKPKPLYTEAMLLSAMEHAGREVADEEARKALAGCGIGTPATRAAIIETLILREYIRREKKMLIPTEKGLSVYKLVAGRKIADAEMTGAWEVALAAIEAGAMDERTFGKSIEVYTRQICEELLTTAAGNTDAHYKTYRCPLCGNDSVRVFPKIVKCVTDGCGFKVFRELCGTLLSKEYIHALMTDGCTPLLCRLTGKSGKTFNARLKLDKDGGTSFVFDSKPRKPQT","1571386 1573476","TIGR ID: PG1495","DNA topoisomerase III","Cytoplasm","Numerous significant hits in gapped BLAST to topoisomerase sequences, e.g. residues 4-632 are 38% similar to emb|CAB12233.1| DNA topoisomerase III of Bacillus subtilis, residues 2-683 are 35% similar to gb|AAF72351.1|AF192329_12 DNA topoisomerase III-like protein of Enterococcus faecalis, residues 4-689 are 30% similar to gb|AAC56004.1| trsI protein of Lactococcus lactis, residues 1-618 are 31% similar to gb|AAF14809.1| topoisomerase B of Salmonella typhi.This sequence is similar to BT2324.","
InterPro
IPR000380
Family
DNA topoisomerase, type IA
PR00417\"[105-118]T\"[191-209]T\"[306-315]T\"[385-401]T\"[506-520]TPRTPISMRASEI
PTHR11390\"[21-487]T\"[504-593]TTopo_IA
InterPro
IPR003601
Domain
DNA topoisomerase, type IA, domain 2
SM00436\"[131-221]TTOP1Bc
InterPro
IPR003602
Domain
DNA topoisomerase, type IA, DNA-binding
SM00437\"[264-543]TTOP1Ac
InterPro
IPR005738
Family
DNA topoisomerase III, bacterial-type
TIGR01056\"[1-689]TtopB
InterPro
IPR006154
Domain
Toprim subdomain
SM00493\"[1-131]TTOPRIM
InterPro
IPR006171
Domain
TOPRIM
PF01751\"[1-138]TToprim
InterPro
IPR013497
Domain
DNA topoisomerase, type IA, central
PF01131\"[154-549]TTopoisom_bac
InterPro
IPR013824
Domain
DNA topoisomerase, type IA, central region, subdomain 1
G3DSA:1.10.460.10\"[160-225]T\"[447-594]TTopo_IA_cen_sub1
InterPro
IPR013826
Domain
DNA topoisomerase, type IA, central region, subdomain 3
G3DSA:1.10.290.10\"[274-399]TTopo_IA_cen_sub3
InterPro
IPR014396
Family
DNA topoisomerase IA
PIRSF001508\"[1-692]TTopA
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.140\"[1-159]TG3DSA:3.40.50.140
SSF56712\"[1-595]TSSF56712


","BeTs to 17 clades of COG0550COG name: Topoisomerase IAFunctional Class: LThe phylogenetic pattern of COG0550 is amtkyqvcEBrHUJgpolinxNumber of proteins in this genome belonging to this COG is 3","***** IPB000380 (Prokaryotic DNA topoisomerase I) with a combined E-value of 1.5e-48. IPB000380A 17-46 IPB000380B 105-122 IPB000380C 155-191 IPB000380D 191-222 IPB000380E 275-302 IPB000380F 307-316 IPB000380G 359-371 IPB000380H 385-401 IPB000380I 490-526","Residues 4-184 are 51% similar to a (TOPOISOMERASE ISOMERASE DNA ENZYME DNA-BINDING I) protein domain (PD001285) which is seen in P96583_BACSU.Residues 272-317 are 58% similar to a (TOPOISOMERASE ISOMERASE DNA ENZYME I DNA-BINDING) protein domain (PD001593) which is seen in Q07711_STAAU.Residues 378-592 are 32% similar to a (TOPOISOMERASE ISOMERASE DNA ENZYME DNA-BINDING I) protein domain (PD001411) which is seen in P96583_BACSU.Residues 192-371 are 27% similar to a (DNA TOPOISOMERASE I EC) protein domain (PD112610) which is seen in TOP1_BACAN.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Feb 15 11:16:54 MST 2001","Wed Dec 10 17:16:26 2003","Thu Mar 15 16:35:21 MST 2001","Thu Mar 15 16:35:21 MST 2001","Thu Feb 15 11:16:54 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1310 is similar to PG0091, DNA topoisomerase I, and to PG0680, DNA topoisomerase III. Residues 5-652 are 34% similar to PG0091.","Mon Jun 4 15:16:17 MDT 2001","Thu Mar 15 16:35:21 MST 2001","-48% similar to PDB:1D6M CRYSTAL STRUCTURE OF E. COLI DNA TOPOISOMERASE III (E_value = 3.3E_68);-48% similar to PDB:1I7D NONCOVALENT COMPLEX OF E.COLI DNA TOPOISOMERASE III WITH AN 8-BASE SINGLE-STRANDED DNA OLIGONUCLEOTIDE (E_value = 9.7E_68);-41% similar to PDB:2GAI Structure of Full Length Topoisomerase I from Thermotoga maritima in triclinic crystal form (E_value = 2.5E_31);-41% similar to PDB:2GAJ Structure of Full Length Topoisomerase I from Thermotoga maritima in monoclinic crystal form (E_value = 2.5E_31);-44% similar to PDB:1CY0 COMPLEX OF E.COLI DNA TOPOISOMERASE I WITH 3'-5'-ADENOSINE DIPHOSPHATE (E_value = 4.5E_25);","","","Residues 1 to 138 (E-value = 2e-16) place PG1310 in the Toprim family which is described as Toprim domain (PF01751)Residues 154 to 549 (E-value = 5.3e-72) place PG1310 in the Topoisom_bac family which is described as DNA topoisomerase (PF01131)","Wed Dec 10 17:16:26 2003","34541162","","","","","","1","","","PG1495" "PG1311","1573485","1573757","273","ATGGCATACCACAAGAAAGAGACACTCCGAGGCAACATCGAAGCCATCCGCACCTTGCTTGCGGTCGAGAAGGAACACCGTCTGCCGACATCGGTTGAACGAGAAGTTCTGAGCCGTTACAACGGTTTCGGCGGCCTCGCGTGCATTCTCAAGCCGGTCGATACGCTTGCCGACCGTACAGCCGCGAGCAACTGCCCATTATCCCCGATCCTTTCTGATGTTTGTCTGTGTAAACAACAAAACATTATGTTTACGAAAAACGTTTTTTACCCT","8.50","3.27","10193","MAYHKKETLRGNIEAIRTLLAVEKEHRLPTSVEREVLSRYNGFGGLACILKPVDTLADRTAASNCPLSPILSDVCLCKQQNIMFTKNVFYP","1573485 1573757","TIGR ID: PG1496","hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","-50% similar to PDB:1DTZ STRUCTURE OF CAMEL APO-LACTOFERRIN DEMONSTRATES ITS DUAL ROLE IN SEQUESTERING AND TRANSPORTING FERRIC IONS SIMULTANEOUSLY:CRYSTAL STRUCTURE OF CAMEL APO-LACTOFERRIN AT 2.6A RESOLUTION. (E_value = );-50% similar to PDB:1I6Q Formation of a protein intermediate and its trapping by the simultaneous crystallization process: Crystal structure of an iron-saturated intermediate in the FE3+ binding pathway of camel lactoferrin at 2.7 resolution (E_value = );","","","No significant hits to the Pfam 11.0 database","","34541163","","","","","","1","","","PG1496" "PG1312","1574228","1574695","468","ATGGCAAACAAACCTTTGCTCTACACGCTCAGCGAGCGTAAGGCCACGCTCGGCAAGTATGCCGGCAAGACCGTTCTTCAGGCCTGCCCGACGGGACGCAGGCGTATCGATCACCGCAATTTTTGCGAAGAAGTAGCTCGTGCTACGACCTTTAAGGGAGCCGAAGTGGAGGCTGTGCTGCGGCTCGCTGCCGAGATTGCCAAGACGCATGTCGAAAACGGCGACATTGTGGACTTCGGCGACATCGGCCTGCTCATGCCCGGCTTCCACAGCAAGCTCGTGGAGAAAGGCGTCGAGAAGTTCAACGCCAACGTGCACATCACCAAGCCCGTCGTTCGGCTCAAACCGTCGAAGCGTTACTTTACGCTTCAGGGCGTGAGTTACGAACGCGTCGATCAGAAAGAGAAACCGCAACCCTCACCGTCCGAACCCTCGACGCCGGGTGGCGGAGGCGGCGGAGGCGGCCTC","10.30","7.86","16916","MANKPLLYTLSERKATLGKYAGKTVLQACPTGRRRIDHRNFCEEVARATTFKGAEVEAVLRLAAEIAKTHVENGDIVDFGDIGLLMPGFHSKLVEKGVEKFNANVHITKPVVRLKPSKRYFTLQGVSYERVDQKEKPQPSPSEPSTPGGGGGGGGL","1574228 1574695","TIGR ID: PG1497","hypothetical protein","Periplasm","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR005902
Family
Putative DNA-binding protein, HU-related
TIGR01201\"[1-156]THU_rel
InterPro
IPR010992
Family
IHF-like DNA-binding
SSF47729\"[36-119]TIHF_like_DNA_bnd


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Feb 21 09:44:38 MST 2001","","Wed Feb 21 09:44:38 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1-156 have 57% similarity to PG1068.","Wed Feb 21 09:44:38 MST 2001","","-51% similar to PDB:1TEL Crystal structure of a RubisCO-like protein from Chlorobium tepidum (E_value = );-51% similar to PDB:1YKW Crystal Structure of a Novel RuBisCO-Like Protein from the Green Sulfur Bacterium Chlorobium tepidum (E_value = );-60% similar to PDB:2ISV Structure of Giardia fructose-1,6-biphosphate aldolase in complex with phosphoglycolohydroxamate (E_value = );-60% similar to PDB:2ISW Structure of Giardia fructose-1,6-biphosphate aldolase in complex with phosphoglycolohydroxamate (E_value = );","","","No significant hits to the Pfam 11.0 database","Wed Feb 21 09:44:38 MST 2001","34541164","","","","","","1","","","PG1497" "PG1313","1574799","1575710","912","ATGAGCCGAAATCAAATATATATCACACAGGAGCAATTCGATTTCTTTTGTCAAACCCAACGACCCTATGAAGGGTTTGTGGAAGGAGTCGGATATGCATTTGTCCATCGTGGATTTGTCAATCCTCACGCTAATCGCCCCACAAATCCGTTCCGCCAAACCAAAGGCTATGTATTGCCTTTCAAGCAGCAGTTGATAGAGGTCTCTCCCGACTTGATAGCTAATAGCTTAAAGTGTAATAAGACCACTGATACACCTCAAGAGGCACCTGAGAGAGACAGTAGATATTTAGGAGAGCGATTTTACACAAAAGACGGTCGATATGTCTATATCGGTACTATGTCCGGCGGATGGGTCTGTTATGACAGATCAGGGAACAGAATACTGGAGCAATTACCTGAAATTATTGTTTACTCTTCAAAAGAACCCGGTAGAAGTATAATAGGGACAGGAAAAGACTTCGTCAATGCCGGACTGGGTATTGCATCCACCTATATGGTTTATAGAGGTGGATACCACAAGTGGAATGAAGCCTGGCATATGACAAAAACACGAGGTTTGAGATACCGGTTTCAGAAACAATGGAAAAACCCGGGTGCTGCTCACTGGCGAAAAGTCCAAACAAATACGGTCAGAACAGCTCGAAGAACAGCAGGGAAATTGACTAAGGCAGGAGGAGCCTTACTCGTTGCAGATATTGCCTTGTCAGGAGAACTAAAGCCTTCTCATGCGATAAATGCTGTTATGTTAGGAGCCTCCACCACCGGAGTCGGCACTATCGTCGCGGGAGCTTGGTTTATCCTTGACTTTGGGACTATGGGTGTGAACTATCTGATCAATGGAGAGGCAAAAAGCTTGAGTGATATAATTGATGAAAATATCGGAACAATCGAAATGTACGATGGACTCTAT","10.10","10.30","34099","MSRNQIYITQEQFDFFCQTQRPYEGFVEGVGYAFVHRGFVNPHANRPTNPFRQTKGYVLPFKQQLIEVSPDLIANSLKCNKTTDTPQEAPERDSRYLGERFYTKDGRYVYIGTMSGGWVCYDRSGNRILEQLPEIIVYSSKEPGRSIIGTGKDFVNAGLGIASTYMVYRGGYHKWNEAWHMTKTRGLRYRFQKQWKNPGAAHWRKVQTNTVRTARRTAGKLTKAGGALLVADIALSGELKPSHAINAVMLGASTTGVGTIVAGAWFILDFGTMGVNYLINGEAKSLSDIIDENIGTIEMYDGLY","1574799 1575710","TIGR ID: PG1498","hypothetical protein","Cytoplasm","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
tmhmm\"[221-241]?\"[247-267]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","-67% similar to PDB:1NQE OUTER MEMBRANE COBALAMIN TRANSPORTER (BTUB) FROM E. COLI (E_value = );-67% similar to PDB:1NQF OUTER MEMBRANE COBALAMIN TRANSPORTER (BTUB) FROM E. COLI, METHIONINE SUBSTIUTION CONSTRUCT FOR SE-MET SAD PHASING (E_value = );-67% similar to PDB:1NQG OUTER MEMBRANE COBALAMIN TRANSPORTER (BTUB) FROM E. COLI, WITH BOUND CALCIUM (E_value = );-67% similar to PDB:1NQH OUTER MEMBRANE COBALAMIN TRANSPORTER (BTUB) FROM E. COLI, WITH BOUND CALCIUM AND CYANOCOBALAMIN (VITAMIN B12) SUBSTRATE (E_value = );-50% similar to PDB:1SV6 Crystal structure of 2-hydroxypentadienoic acid hydratase from Escherichia Coli (E_value = );","","","No significant hits to the Pfam 11.0 database","","34541165","","","","","","1","","","PG1498" "PG1314","1575667","1576161","495","TTGATGAAAATATCGGAACAATCGAAATGTACGATGGACTCTATTAACGGTAAAAGCATAGATTACAGACCTCCGGTAAAATATCTGCTGTTAGGCATTGGGGCCATCCCCTGCAGCATATTTATGTTTTTGGGAATGGACGGAGGAAGGCTCATCGTATCGATCATCCTCGGGATTTTTTGTGTCGCCACGCTGGCAATGGCGATAATCTTCTTACTGCTTTATTTCAGGCGAACCGGCATTCGGAGGATTATTATTGGGCAAGACCAAATCCTCTTTGAATCATCGGATAATACCGTGCAAATATTTCCTCTCAACACACTGAAGTCGGTCGATTTGTACTCTACCTACGATGAGATGATCGAGCTTAAAGCCCATCGGCAGCCGAAAATTACGCTGTCGAAAAGCTGGATTAAGAGGAAAGACTATCGGTTTATTGTGAGCTATCTACGAGAACGTTCAGCCACAAGCGGCTATAAATACACCGACTACCGG","10.40","9.08","19000","LMKISEQSKCTMDSINGKSIDYRPPVKYLLLGIGAIPCSIFMFLGMDGGRLIVSIILGIFCVATLAMAIIFLLLYFRRTGIRRIIIGQDQILFESSDNTVQIFPLNTLKSVDLYSTYDEMIELKAHRQPKITLSKSWIKRKDYRFIVSYLRERSATSGYKYTDYR","1575667 1576161","TIGR ID: PG1499","hypothetical protein","Inner membrane, Cytoplasm","This sequence corresponds to gi:34397482 in Genbank.","
noIPR
unintegrated
unintegrated
signalp\"[1-68]?signal-peptide
tmhmm\"[26-46]?\"[52-74]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","Tue Mar 8 11:04:00 2005","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 8 11:04:00 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541166","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Tue Mar 8 11:04:00 2005","","1","","","PG1499" "PG1315","1576242","1578530","2289","GTGGAGCGTTTCAATGAAGTGGAACGGGGACGGGAAATTTCCGGACGAATGTTGAAAGGGTTGGAAATCCGGAAAAAGAATCTGGAGGCCAAACTCACCCGGATTGCCGACGACATCGCCGAACGGAAGGACGATACGATCGATTTCAAACGGATGGGAATCGACCACCTTTTTGTGGACGAAAGCCACAAATTCAAGAACCTGACTTTTACGACCCGTCACGACCGGATAGCGGGGCTGGGCAACAGCGAAGGCAGTCAGCGTGCCCTGAACCTGCTCTTTGCCATCCGCACCATTCAGGAACGCACGGGCAAAGATTTAGGGGCGACCTTCCTTTCGGGAACGACCATTTCCAACAGTCTGACCGAGCTGTATCTGCTGTTCAAATACCTGAGACCGCAAGCGCTCGAAAAGCAGGGAATCGGAACGTTCGACGCATGGGCAGCCGTCTTTGCCAGGAAAAGCACCGACTATGAATTTTCGGTGACCAACGAGATTATCCAGAAGGAGCGATTCCGCACCTTTATCAAAGTCCCCGAATTGGGAGCGTTCTACGCCGAAATCTGCGATTTCCGCACGGCGAAGGACATCGGGATCGACCGTCCGGAAAAGCATGAAATTCTGCATCACATTCCGCCGACGCCCGAGCAGGAAGCCTTTATCCAAAAGCTGATGGAATTTGCCCGTACCGGTAATGCCGAGCTATTGGGTCGGGAGAAACTCTCCGATCGGGAAGAAAAGGCGAAGATGCTTATCGCCACCGACTACGCCCGAAAGATGTCGCTCGACATGCGGATGATCTCTCCTTCTTACGAAGACCATATCGACAACAAGGCTTCGCACTGCGCCCGACTGATCCACGATTATTACCGGAAATATGAACGGGAGAAAGGTACCCAGTTTGTTTTCTCGGATTTAGGCACGTACAAGCCGGACGAGTGGAACGTTTACAGCGAAATCAAACGAAAACTGACCGATGATTATGGCATCCCTGCGTCGGAAATCCGTTTCATTCAGGAATGCAAAACGGAGGCTGCCAAGAAAGCGATGATCGCGGGCATGAATGCCGGCAGCATACGTGTCCTGTTCGGCTCCACCGAAATGCTCGGAACGGGCGTCAATGCCCAGCAGAGGGCTGTGGCGGTGCATCATCTTGATACGCCCTGGGTGCCCAGTGCTCTGGAGCAACGGGATGGCAGGGCAATCCGCAAAGGCAATGAAGTAGCCAGGTTCCATGCCGGCAACAAGGTCGATGTCATCATCTACGCCGTGGAAAAGTCGCTCGACAGCTACAAGTTCAATCTGTTGCACAACAAGCAGCTTTTCATCAATCAGCTGAAGACAAACTCCCTCGGAAGTCGAAGTATCGACGAAGGTGGCATGGACGAAGCAACAGGCATGAACTTTTCCGAATATGTAGCCGTGCTATCCGGTAATACCGACCTGTTGGAGAAAGCCCGGTTGGATAAGAAGGTGATGGCGATGGAGAGCGAGCGAAAGAACTTTCTTTACGAAAGAGACACGGCCCGTTCGCAACTGGCGAAACTTCAGGGCGCGGTCGAGTTTCATGAGAAGAAGATCGCCGAAGCCGGGAAAGACCGGACGGTTTTCGAGGAGCGGGTAAAGAAAAACGAAGACGGGACATACCAAAACCCGATACGGATCGATGGAGTGGAAGACGGCAGGGATATCAAAACAATCGCTCGCAGGCTGAAAGAGTACGAAGAGAAAGCCCGGACAGGCGGAGAGCACATGCCGATCGGCGAATTATACGGCTTTCAATTATCCGTCAAGAGCGAAGCCTCCATGAAAGAGAGTTTCGACTTCGTGGATAACCGGTTCTTTGTGAAAGGTTGTGGCAGCATCTATTATACTTACAACAACGGACATTTGGCTGAAGACCCCAAACTGGCCTGCATGAACTTTCTGAATGCCTTGGAGAAGATTCCCAGAGTCGTCGAGAGTCATCGGAAAGAACTGGCTGCGACACAAGCCAAGATACCGACGTTCGAAACGATGGTTTCTGCCGTATGGAAGAAAGAGGAGGAATTGCAGGAGCTGAAGAGACAGGCCGCGGAGCTGGATCGCAAGATCGCCCTTTCGCTCAAAAAAGAGGACAACAGCGAAGTGAAACCGGAAGAAACGGTCGCTCCCGATGCGACAATCGCAGTCGATGCGCCCTTACGGGAGGAGCTAAAAAGGGAACGGTCTTCCGAGCGGAATCATACCGATTGGAAAGAAATACGGGAGGATGAAAAAATCAAACCCTGCATAAAGCCTGGAAGGTGG","7.50","3.18","87477","VERFNEVERGREISGRMLKGLEIRKKNLEAKLTRIADDIAERKDDTIDFKRMGIDHLFVDESHKFKNLTFTTRHDRIAGLGNSEGSQRALNLLFAIRTIQERTGKDLGATFLSGTTISNSLTELYLLFKYLRPQALEKQGIGTFDAWAAVFARKSTDYEFSVTNEIIQKERFRTFIKVPELGAFYAEICDFRTAKDIGIDRPEKHEILHHIPPTPEQEAFIQKLMEFARTGNAELLGREKLSDREEKAKMLIATDYARKMSLDMRMISPSYEDHIDNKASHCARLIHDYYRKYEREKGTQFVFSDLGTYKPDEWNVYSEIKRKLTDDYGIPASEIRFIQECKTEAAKKAMIAGMNAGSIRVLFGSTEMLGTGVNAQQRAVAVHHLDTPWVPSALEQRDGRAIRKGNEVARFHAGNKVDVIIYAVEKSLDSYKFNLLHNKQLFINQLKTNSLGSRSIDEGGMDEATGMNFSEYVAVLSGNTDLLEKARLDKKVMAMESERKNFLYERDTARSQLAKLQGAVEFHEKKIAEAGKDRTVFEERVKKNEDGTYQNPIRIDGVEDGRDIKTIARRLKEYEEKARTGGEHMPIGELYGFQLSVKSEASMKESFDFVDNRFFVKGCGSIYYTYNNGHLAEDPKLACMNFLNALEKIPRVVESHRKELAATQAKIPTFETMVSAVWKKEEELQELKRQAAELDRKIALSLKKEDNSEVKPEETVAPDATIAVDAPLREELKRERSSERNHTDWKEIREDEKIKPCIKPGRW","1576242 1578530","PG1315 has a helicase-like domain.TIGR ID: PG1500","conserved hypothetical protein","Cytoplasm","PG1315 shows similarity to four proteins using gapped BLAST, residues 19-535 are 30% similar to ref|NP_053287.1 in A.tumefaciens, residues 19-533 are 30% similar to ref|NP_066674.1 in H.pylori, residues 8-529 are 275 similar to ref|NP_066779.1 in Rhodococcus equi and residues 26-319 and 295-502 are similar to two domains of gb|AAD06506 in H.pylori.This sequence is similar to BT2326.","
InterPro
IPR001650
Domain
Helicase, C-terminal
PF00271\"[327-405]THelicase_C
PS51194\"[285-464]THELICASE_CTER


","BeTs to 5 clades of COG0553COG name: Superfamily II DNA/RNA helicases, SNF2 familyFunctional Class: K,LThe phylogenetic pattern of COG0553 is a--kY-vceBrh--gp--IN-Number of proteins in this genome belonging to this COG is 3","***** PF00176 (SNF2 and others N-terminal domain) with a combined E-value of 3.3e-11. PF00176C 57-67 PF00176D 109-130 PF00176E 191-221 PF00176G 370-423","Residues 26-319 are 32% similar to a (PUTATIVE) protein domain (PD217915) which is seen in Q9ZKK7_BBBBB.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Wed Dec 10 17:19:50 2003","Tue Feb 13 18:21:20 MST 2001","Wed Dec 10 17:19:50 2003","Tue Feb 13 18:21:20 MST 2001","Mon Jun 4 15:20:04 MDT 2001","Tue Feb 13 18:21:20 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1315 is similar to PG0758, a conserved hypothetical protein. Residues 254-756 are 62% similar to residues 2-504 of PG0758.","Mon Jun 4 15:20:04 MDT 2001","Mon Jun 4 15:20:04 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jun 4 15:20:04 MDT 2001","34541167","","","","","","1","","","PG1500" "PG1316","1579192","1578596","597","ATGAGTACAAAAAACACGAAAGAATTGGTCCTTTTAGAGGCGTTTAAGTTGTTTTCGGAAAAACCTTACGACAAGGTTACTTATACAAACCTCCAGGAGAATACCGGATTAAGCAGAGGCAGCGTGTTGCATCATACAAAATCAAAGTCTGCTCTTTTTGCAACAGTGTTAAGTGAGTTTATACTCGCAAGTTCCATTCCTGAGCGTTCTTTTGAAAATGGAGAAAGCCTCAAAGGTTTTATACAACGCTTCATCGAAAATTGTCGTATAGAGCAAAAGACTTTGCAAAAAAGAGGAATTGAGAACATAAATAAATCTATGCTCAACTTATGTTCTCAAACTTTTTACTACTGCCCAATTATGGCAGAACGATATGCAGAATGGATGAAAAACCAGCAAAGGACTTGGGTTAAAATAATTAGAATTGCGATGGATAGGAAAGAAATAAGAAGTGATGTTGATGTGGAAATGGTTGCATCTTTATTTCATAATCTGTATTTAGGATTTTCTTTCTCCGGTAGCACAGAAAGGGGGGGGTACGACTTAAATTTTCTTGAAAAAGAGTTCGGCTTCATTTACTCCTTTCTATTAAAAGAA","8.70","3.59","23184","MSTKNTKELVLLEAFKLFSEKPYDKVTYTNLQENTGLSRGSVLHHTKSKSALFATVLSEFILASSIPERSFENGESLKGFIQRFIENCRIEQKTLQKRGIENINKSMLNLCSQTFYYCPIMAERYAEWMKNQQRTWVKIIRIAMDRKEIRSDVDVEMVASLFHNLYLGFSFSGSTERGGYDLNFLEKEFGFIYSFLLKE","1579192 1578596","TIGR ID: PG1501","hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR001647
Domain
Bacterial regulatory protein, TetR
PR00455\"[10-23]T\"[31-54]THTHTETR
PF00440\"[10-56]TTetR_N
PS50977\"[4-64]THTH_TETR_2
InterPro
IPR009057
Domain
Homeodomain-like
SSF46689\"[4-61]THomeodomain_like
InterPro
IPR011075
Domain
Tetracyclin repressor-like, C-terminal
SSF48498\"[121-198]TTetR_like_C
InterPro
IPR012287
Domain
Homeodomain-related
G3DSA:1.10.10.60\"[4-53]THomeodomain-rel


","BeTs to 7 clades of COG1309COG name: Transcriptional regulators, AcrR familyFunctional Class: KThe phylogenetic pattern of COG1309 is a-T--QVCEBRH---------Number of proteins in this genome belonging to this COG is 3","***** IPB001647 (Bacterial regulatory proteins, TetR family) with a combined E-value of 3.1e-07. IPB001647 14-53","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Feb 21 09:48:58 MST 2001","","Wed Feb 21 09:48:03 MST 2001","Wed Feb 21 09:48:03 MST 2001","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","Residues 10 to 56 (E-value = 1.8e-05) place PG1316 in the TetR_N family which is described as Bacterial regulatory proteins, tetR family (PF00440)","Wed Feb 21 09:48:03 MST 2001","34541168","","","","","","1","","14","PG1501" "PG1316.1","1579702","1580349","648","ATGGAAAATTGTAGTATTCAAAGAGACTTCCTCAGCAAACTTGCAGAGGATGCTGATGCACACAACATCAAGAAAATTGAAAATGCTTTTGTTCATAAAGTGAACAAAGATTATGTGTTGATTTCTGAAATAAAGGAAGTTCCCGAAAATTACTTGAATAATGATGGGGAAAAAGATGAAAATTGCAAGTTTTTGTACTTAGTTGCCTTTCCTAAGCATGATTGTGTATTTTGTTTTGACCATGAATTAGACCACCTCCCTTTCATGATGACTATCGAGCTTATTAGGCAAGCTGGAATAGCGATTGGGCATGTAATCCACAAAATACCACTAAAAGGTTTTACAAACATAATGGATTGCATGAATCTGAATGTTCTAAAATTTATTGAGTTGGATGTTCCTCTACTAATCATCATCAATGACATAATGTTGAAGAATAAACCCAGCAGACAAGAAAGAATGATGCATTTCTACTTATATCAAAAGAACTCACTATGTGCTTCTGTTGACATAAATGCGTCCATTATGGAAAAAGATATATATCGACGATTAAGATTGAGCAGCCGGGCAGAGTTAATACAAAACACTTCATTGGACAAAGTCCCAACGACTAATTTGCAAATGCTTAACAAAAGAATTTCAATCAAA","","","25171","MENCSIQRDFLSKLAEDADAHNIKKIENAFVHKVNKDYVLISEIKEVPENYLNNDGEKDENCKFLYLVAFPKHDCVFCFDHELDHLPFMMTIELIRQAGIAIGHVIHKIPLKGFTNIMDCMNLNVLKFIELDVPLLIIINDIMLKNKPSRQERMMHFYLYQKNSLCASVDINASIMEKDIYRRLRLSSRAELIQNTSLDKVPTTNLQMLNKRISIK","","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","","","Wed Feb 21 10:53:17 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Feb 21 10:53:17 MST 2001","","","","","","","1","","14","" "PG1317","1580368","1581315","948","ATGGATGTAATTCAACTTTCGAATGACGGCCGATGCAGGTGGTTGGAAAAACAGGTAATGAATAAAATTTTTCCTCAGGCCATCCGATCTGCCAAAATAAAGGATATTCCCACTCAATATATGATTATTGACTGGATAAGTAACGATAATGGGAAAGTAGGGGTAGATCTAAAATGGTTTAAGAAATTAGGAGTACCTTATGTAAAGACATACAACGATCTTCCCGAAGGGAATGATTTTGTCGTAGTGAATACCGGGTATGATTCGATCGTACATGAAGAAAAGGTATTACGTGAAAAAGGGGTTGAAATCTTAGACAAGCCTTGCCCTTTTGTTCGAAAATTAAGAAAAGAATTTGAGAAAATCGATGACTCCTATCAATATGTACTGCTATGTGAGTCGAATCACATCATAATAAAAAATTTCGCTACGATATTTCCCCGAGACATGATCTTGATTCAAATGGGTAACTACAAGGAAAAACTTTTGGAACAAAGTAATGGAAAACCAATGATGTTTATTTCGTATGTTACTTTTCTAAAAAAGCATTCTATTCAGGTTTTTGACTTTATCAATAAAACCTTCCCCGGGAAAGATCATAAAATGGTCGATACTCAATGTATGTGGGCAGCAGGAAGACTTAGTCCAATAGATGAGATCCGTAATATGTCGGAAGACATATTAAAAGAGGTACGTTACGCATTGTTAATAGGCTCTCCAGGATCAACCAATAAGTCTTTGATGTCATTACACGAAACAATAATAGACAAAGGACTAGAAGTGATTAACATAGGTAGTCTTAGAGACTTTCTCGATTTCAGACGAAAACACAAAAAAGAAAAAGTTCTTTTAGTTAAGTCTCCGATTCCCAATCAGGCCGAAAAACCCATACTTGCTTTCCTGCGACATGGATATCTGTACGCCTACTACACTCTTTGGAGAGAACGA","9.80","10.51","36948","MDVIQLSNDGRCRWLEKQVMNKIFPQAIRSAKIKDIPTQYMIIDWISNDNGKVGVDLKWFKKLGVPYVKTYNDLPEGNDFVVVNTGYDSIVHEEKVLREKGVEILDKPCPFVRKLRKEFEKIDDSYQYVLLCESNHIIIKNFATIFPRDMILIQMGNYKEKLLEQSNGKPMMFISYVTFLKKHSIQVFDFINKTFPGKDHKMVDTQCMWAAGRLSPIDEIRNMSEDILKEVRYALLIGSPGSTNKSLMSLHETIIDKGLEVINIGSLRDFLDFRRKHKKEKVLLVKSPIPNQAEKPILAFLRHGYLYAYYTLWRER","1580368 1581315","TIGR ID: PG1503","hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","No hits reported.","BeTs to 4 clades of COG0761COG name: Penicillin tolerance protein LytBFunctional Class: MThe phylogenetic pattern of COG0761 is -----qvcebRhuj---lin-Number of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Feb 21 10:54:30 MST 2001","","Wed Feb 21 10:54:30 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Feb 21 10:54:30 MST 2001","34541169","","","","","","1","","14","PG1503" "PG1318","1581336","1582319","984","ATGAATGATATAAAAATGATAAGAATTGGCATAACCGGGGGAACAGGTTTTCTTGGAAACAGACTCGTTGAATTATTGTCAAAAACAAACACACCAATAACCTGTTTGACAAGGGAAAGTAGCAATATAGAAACAATAGAAGATAAAGTCAAAGTTATCAAAGGAGATTTATCGAACTTGGAATCTCTCGAAGATTTTGTAAAAGGACAAGATGTAATTGTTCACTTGGCGGCACAAGTTTCACGAACAACAAAGAAAGAATATTATCAATCAAATGTTCTTGGAACAGAAAATCTTTGCAAAGCAATCAATCAATATAATCCTGAGTGCAGACTCATAAATTGTTCCTCCATTGCAGCCTACAGGATAAAAGGTTGGTGTAAGCTCCAATTTACAGATTACGCTAAGAGCAAATTATCCGCAGATAGAGTGGTCGACTCTTATATGAAAACAATAAAAGCAACAACCATTATACCCGGAATAATCTATGGAGCTGGAAATAATGCATTTATTTCTGCTATAATAGAAAACTTAGAAAAAGGGAAGCTGTTTTTTGCCAAGGGTGGAGAAAAGTTTGCCCCGCTAAGCTATATAGACGATTTATGCGACTTATTTATTAGGGCTATATACAATGAAGAATCTGTAGGGAATAAATACTTCGGAATTAAATATAGTGAAAGAGGCATCCACGATTTTATCCGCATAATCGCATCGAAAACATATAATAAAGCTCCTGATGCGGTTTTATCAAAAAACAAGTTGATGGCAAAAGCCGTTTTCTGGCAGTTTGTCTATTCTTTTTTCAAAATCAAAAAAGCACCTACTTTGTCAATTAGAATGGTGGATATTATGTCTATAAACTATTCCCTTTCCGAAGAACAGAGAACAAATAATTTAGGATGGGAGCCTTCTGTCGATATGGAGGAAGGGGTTGATAATGCTCTTTTATCATATAATTTGAAAAAAGACTCAACAAATCGAAGT","9.20","7.21","36906","MNDIKMIRIGITGGTGFLGNRLVELLSKTNTPITCLTRESSNIETIEDKVKVIKGDLSNLESLEDFVKGQDVIVHLAAQVSRTTKKEYYQSNVLGTENLCKAINQYNPECRLINCSSIAAYRIKGWCKLQFTDYAKSKLSADRVVDSYMKTIKATTIIPGIIYGAGNNAFISAIIENLEKGKLFFAKGGEKFAPLSYIDDLCDLFIRAIYNEESVGNKYFGIKYSERGIHDFIRIIASKTYNKAPDAVLSKNKLMAKAVFWQFVYSFFKIKKAPTLSIRMVDIMSINYSLSEEQRTNNLGWEPSVDMEEGVDNALLSYNLKKDSTNRS","1581303 1582319","TIGR ID: PG1504","conserved hypothetical protein","Cytoplasm","Numerous weak hits in gapped BLAST; e.g. residues 7-315 are 24% similar to emb|CAB80053.1| putative protein of Arabidopsis thaliana, residues 7-311 are 24% similar to gb|AAF84631.1|AE004004_2 NAD(P)H steroid dehydrogenase of Xylella fastidiosa, residues 9-121 are 36% similar to dbj|BAA30856.1| 306aa long hypothetical UDP-glucose 4-epimerase of Pyrococcus horikoshii. ","
InterPro
IPR001509
Family
NAD-dependent epimerase/dehydratase
PF01370\"[9-182]TEpimerase
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.720\"[8-240]TG3DSA:3.40.50.720
PTHR10366\"[11-250]T\"[299-318]TPTHR10366
SSF51735\"[8-319]TSSF51735


","BeTs to 7 clades of COG0451COG name: Nucleoside-diphosphate-sugar epimerasesFunctional Class: M,GThe phylogenetic pattern of COG0451 is AMTKYQVCEBRHUJ--o----Number of proteins in this genome belonging to this COG is 5","No significant hit to the Blocks database.","Residues 9-215 are 25% similar to a (PROTEIN OXIDOREDUCTASE DEHYDROGENASE REDUCTASE NAD NADP) protein domain (PD000038) which is seen in O29886_ARCFU.","","Thu Jun 14 11:47:04 MDT 2001","","Thu Jun 14 11:47:04 MDT 2001","Thu Jun 14 11:47:04 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:47:04 MDT 2001","Thu Jun 14 11:47:04 MDT 2001","","","Thu Mar 15 17:15:41 MST 2001","Mon Jun 25 15:21:35 MDT 2001","Wed Feb 21 11:12:13 MST 2001","","Mon Jun 25 15:18:13 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 11-327 show 23% simiarity to PG1365, a predicted TDP-glucose 4,6-dehydratase (dTDP-D-glucose-4,6-dehydratase).Weaker similarities are seen to PG1707, a putative udp-glucose 4-epimerase.","Mon Jun 25 15:18:13 MDT 2001","Thu Mar 15 17:15:41 MST 2001","-53% similar to PDB:2HUN Crystal structure of hypothetical protein PH0414 from Pyrococcus horikoshii OT3 (E_value = 6.4E_10);","","","Residues 8 to 322 (E-value = 2.5e-06) place PG1318 in the 3Beta_HSD family which is described as 3-beta hydroxysteroid dehydrogenase/isomerase family (PF01073)Residues 9 to 322 (E-value = 4e-07) place PG1318 in the Epimerase family which is described as NAD dependent epimerase/dehydratase family (PF01370)","Mon Jun 25 15:18:13 MDT 2001","34541170","","","","","","1","","14","PG1504" "PG1319","1582386","1583261","876","ATGCACTTCACAGGAACAATCTGGCGACCTCCGTATGAAGCTAACTCGCAATTGATTCAGGCAACAATAGGATGTAGTCACCATAGTTGTAAATTTTGTTCATTATATCCCGGCATTAAGTTCAAAATCTCGCCTAAAGAAGAATTCGAACATGATTTGAAAATCATTCAAAAATATCAACCCAAAGCACGTCGGGTATTCTTAGTTGGAGCAAATCCATTTGTACTGAGTTACAACCGTCTACTTGATCTCGGTTTTCTAATCAGGAAGTATCTTCCTGAATGCAAGAGCATAGGAATGTTCGCTCGAGTTACAGATATTACTCACAAGAGTATAGAAGAGTTAAAAAATCTTCGCCATTTGGGATTTAATGGAATAACTGTTGGAACTGAATCCGGAGATGATCTGACATTATTGCATATGAATAAGAAAACAACTTCAGCAGAAACGATAGAAAACCTCAAGAAGTTTGAAGAGGCAGGCATAGAATATTATGTGTCCTATCTTACAGGATTGGCCGGTGCCGGAAATGGAGAAAGAAATGCTTTAGCTACTTCCGATATGTTTAATCAATTACATCCTTATATCATTTCAGTTGTATCATTAACGATTTTTCCTGACACAGTTCTATTTCAAGAAATTCAACAGGGGCTTTTTAGAGAGGCGTCTGAACATGAGAGATTAAAAGAGCTACGCACCTTTATAAGTAATCTGAAAATCAATACGAATTTCTTCGCAAATACGGTATCTAATCCTGTTCCATTAACGGGATACTTGCCCAATGATAAAAAGAGATTGATCAATGAGCTTTCCGATGTTATTAATGCCGTAGATGAAAGGGTGTTGAAAACATACAGAAAGAATTTGAAATCTCTT","9.20","6.99","33252","MHFTGTIWRPPYEANSQLIQATIGCSHHSCKFCSLYPGIKFKISPKEEFEHDLKIIQKYQPKARRVFLVGANPFVLSYNRLLDLGFLIRKYLPECKSIGMFARVTDITHKSIEELKNLRHLGFNGITVGTESGDDLTLLHMNKKTTSAETIENLKKFEEAGIEYYVSYLTGLAGAGNGERNALATSDMFNQLHPYIISVVSLTIFPDTVLFQEIQQGLFREASEHERLKELRTFISNLKINTNFFANTVSNPVPLTGYLPNDKKRLINELSDVINAVDERVLKTYRKNLKSL","1582371 1583261","TIGR ID: PG1505","possible oxygen-independent coproporphyrinogen III oxidase","Cytoplasm","Several significant hits in gapped BLAST; e.g. residues 1-274 are 35% similar to gb|AAB89934.1| oxygen-independent coproporphyrinogen III oxidase, putative of Archaeoglobus fulgidus, residues 1-283 are 30% similar to gb|AAG06344.1|AE004721_12 conserved hypothetical protein of Pseudomonas aeruginosa, residues 8-277 are 29% similar to ref|NP_071276.1| Fe-S oxidoreductases of Archaeoglobus fulgidus.","
InterPro
IPR006638
Domain
Elongator protein 3/MiaB/NifB
SM00729\"[15-233]TElp3
InterPro
IPR007197
Domain
Radical SAM
PF04055\"[19-189]TRadical_SAM
noIPR
unintegrated
unintegrated
PTHR13932\"[47-240]TPTHR13932
SSF102114\"[9-241]TSSF102114


","BeTs to 4 clades of COG1032COG name: Fe-S oxidoreductases family 2Functional Class: CThe phylogenetic pattern of COG1032 is AMTK--VCe-r----------Number of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","Residues 7-211 are 36% similar to a (PROTEIN BIOSYNTHESIS OXIDASE COPROPORPHYRINOGEN III) protein domain (PD000690) which is seen in O28958_ARCFU.Residues 8-131 are 31% similar to a (CONSERVED HYPOTHETICAL PROTEIN) protein domain (PD032328) which is seen in O28638_ARCFU.","","Thu Jun 14 11:47:33 MDT 2001","","Thu Jun 14 11:47:33 MDT 2001","Thu Jun 14 11:47:33 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:47:33 MDT 2001","Thu Jun 14 11:47:33 MDT 2001","","","Wed Apr 4 18:22:28 MDT 2001","Mon Jun 25 15:24:01 MDT 2001","Wed Feb 21 11:24:41 MST 2001","","Mon Jun 25 15:24:01 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Mar 19 08:33:32 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 19 to 189 (E-value = 3.3e-10) place PG1319 in the Radical_SAM family which is described as Radical SAM superfamily (PF04055)","Mon Jun 25 15:24:01 MDT 2001","34541171","","","","","","1","","14","PG1505" "PG1319.1","1583365","1583763","399","ATGAAGAAGATCTTGATTACTGCCAATTTAGTGTGTGTATTCATGCACATTTTATTTGGACTGTCTATTTTAGAAAACAGGTCTGACATATATCTTTTTATGTCAGTTGAAAATTCAATTACCACATTTACATATCTCCTTGTTTCTTATCTGATTTGCTGTTCTGAAAAGCAAAAAAAAGCATTGTTTATCAATTTGATATTCTGGAGTTTTTTTGAGATAAATGTGTTATTCTTCAAACCGAATGTAACGACTTTATATGTTATAGAGAAACATTTACCTCAACTGCAACAGTGGATTGTTCTGTCTATATATGGAGGAATACTAATATTTCTCACAACATTAGAAATTGCAAAAACTTATAACCTCGGAATACTAACCCCTAAAAGAGTAAAAAGA","","","15533","MKKILITANLVCVFMHILFGLSILENRSDIYLFMSVENSITTFTYLLVSYLICCSEKQKKALFINLIFWSFFEINVLFFKPNVTTLYVIEKHLPQLQQWIVLSIYGGILIFLTTLEIAKTYNLGILTPKRVKR","","NO TIGR ID corresponds to this gene.","hypothetical protein","Inner membrane, Cytoplasm","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-20]?signal-peptide
tmhmm\"[5-24]?\"[30-52]?\"[61-79]?\"[98-118]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","14","" "PG1320","1583763","1586189","2427","ATGAAAAAGTTATCGTTACAGAGTATTGGACTATTTTTCGCTGCTGCTGTTCTGATGGTATTTCTGACAGGGTGCGAAAACCGGTTTGACTTGGAGGACATTCCGCAAGAAGCGGAAATCCGGACACGCTCGGCCATAGGCGAGACGGATAACGGCAGAGAATACCTGGGCCGTAATTTTTACCTGACAAGTTCGGATGAAGTGGTTTCGGACAGTCGATCCGGAGCAGAAAGGAAAATGCTGGCCCGTACATTTAACATTCAGACCGGTTCTGTGGGGAGCAATTGCTTAGGTGTACACGTCATGGCATGTTATACCGATAAGGATGGAACATTGCAGCAAATCGAAGTGTGGGTTAATGACGAATATGCTGGAGAGCTTGACATTCGTAAAGCCGAATGGGATTTTGTTACGCTCAAGGATGGAAAAACAGTCCGGCTGCGTCAAGGAGCCAACAAAATTACTTTCCTGTCCTCTTTGCCATACTTTCCCGAAATAGACGCTATTCAAGTTGAATCGGCGCGGCAGGCACTCATGAAAGAAGACCCGCAATATAATGCCTTTATCGCTCTGCTGAAACAACAGCGGAATGCTTCGACGAGCAAGTTGGAGCAGGAAGAAATCATCCGGATGACATCGGAGAGCAATGACGGACTAAATGCTTCTTCCCACTCTGCGGGCAGGTCAGCTTATGACCAGGGCTGGAACTGGCAAGTGACCCCACGCGAACTCAGTAATCCCGACGGAAATTACAGGCACCTGGTTTGTGTCCCGGTAACTTATACTTATCATCGCAAGCTATCATTGAGCAGCGGAACGCATACATTTATGACCACTCCCATCGAAGGAGACAGCTATTACACCGTCGATCCGGTTATGTATTTATACAAAATCGATGATCCTCACAACCATACGTATTATAATGATGATGCCTCCGGGCTGGGACATCACGCCCAAATAACTGAAACATTGCTTGCCGGAGAATACTATCTGGTTATCCGGGCATACAGCAGTTATTATGCCTCTACTACGACGGGGAGACAAGGTTTGGTTAATGTCTTCCAGGATGGTTATATCCTGAATTCACAATGTCCGATAGCCGGTTATTCCGTGGATGTCGATTCTCCGAACACAGGTACGATCAACTATTTTACAGCGTACACGACAGGTATAGCAGAATTCTTTCTGGAAGAAAAAGGAAGCAAAAAAGTGAAATTCTTCGGCGAATCCTATTTCTACGTTCCTCCCATGGAGCAGATGTGGTTCAACGATGCGCGCCTAAGGTTGACAAAGCCATCGAGTCAGGCCCGATACAATATGATTATATCTTCCGTAGGTGCTTTCGGTGCTTATTACGGTAACTGCGACGTGTATGGTTCCTGCCAGCAGGTAATGCCCGGTGATCAGGTTGCCAACAGTTTTCCCAACTTGATGGTAAACGATGGCATATACAGCAGTGGAGGAAATACCGGAGTATACAACTGTGCGTCATGGGCCGGAGGCTTAACATACGGCTGGACGTGGGGAAGCATCTATGAGAGCTATGCAAACCCCGAGTTGGTAGGGCCTTACTATGGCGATCCTAATGTATGGAGCAGTTGGGACGCCTTCTTTGCCAACAACCCGCAACGATATGCCGGCGCGACTGTATACACACGTGAAAATGCCGATGCAACCAACGGAGAAGTAGCTGTATGGTCCTATAACGGAAACATAAGCGGAGTTACTCATTTCTCATGCAGAGGTACAGCCAATGACCATCCACACGGTTACGCATGGGAAAGCAAGCTCGGCAGGCAGAGAAGAATCTTTCACCCACGTGATGCTCTTAGAGGTCAAGGTATGTATTCGTATGGTCAAGTGTTCGCTTACTATAGAGATGCCAGCAAGCCGATCGGCCCTTATCCCAATCCCGGTTTGAGGAAAAATTCTTCCCAATCCATTTCTTTCGAAGAATCGGTACGGAGAGGTTTGACGGTGATTGAAAAGGTGGAACTTTTTCCGGTCGAAAAAGAAACGTTCACACGGAAAAGCAAAGAGAAAGGGTTGACTGCAAACAATCCCGAAATAAGAAAGCTGTATGATGCCTGGGACAAAAAAATCTCTTCTCGATATGCCCATATCAGCAACCCGTATGTGCTTATGGAAATTCAGGAAGGGAAAAACCTGATCGCATATTGCCGGGAAAAACAACAGGAGGCTCTGGTATTCTTTATCAACCTGTATTTTAACGATAGTCGCGAGACTGCCACCAAGGCAGTGTCCCACTATATGTTTTGCGTAATATTTTCAGAATATGGTGCAGAAATCGAGGCGATAAAAAATGATTGGAGACGCAATCAGTACAATCAAAAGGGAGCTTATATCGCACCGGTTCCTGAAATGTTCGTGAAGAAATTCGCAAAAAGATTGTTTAATAAATTATTA","6.50","-4.84","91553","MKKLSLQSIGLFFAAAVLMVFLTGCENRFDLEDIPQEAEIRTRSAIGETDNGREYLGRNFYLTSSDEVVSDSRSGAERKMLARTFNIQTGSVGSNCLGVHVMACYTDKDGTLQQIEVWVNDEYAGELDIRKAEWDFVTLKDGKTVRLRQGANKITFLSSLPYFPEIDAIQVESARQALMKEDPQYNAFIALLKQQRNASTSKLEQEEIIRMTSESNDGLNASSHSAGRSAYDQGWNWQVTPRELSNPDGNYRHLVCVPVTYTYHRKLSLSSGTHTFMTTPIEGDSYYTVDPVMYLYKIDDPHNHTYYNDDASGLGHHAQITETLLAGEYYLVIRAYSSYYASTTTGRQGLVNVFQDGYILNSQCPIAGYSVDVDSPNTGTINYFTAYTTGIAEFFLEEKGSKKVKFFGESYFYVPPMEQMWFNDARLRLTKPSSQARYNMIISSVGAFGAYYGNCDVYGSCQQVMPGDQVANSFPNLMVNDGIYSSGGNTGVYNCASWAGGLTYGWTWGSIYESYANPELVGPYYGDPNVWSSWDAFFANNPQRYAGATVYTRENADATNGEVAVWSYNGNISGVTHFSCRGTANDHPHGYAWESKLGRQRRIFHPRDALRGQGMYSYGQVFAYYRDASKPIGPYPNPGLRKNSSQSISFEESVRRGLTVIEKVELFPVEKETFTRKSKEKGLTANNPEIRKLYDAWDKKISSRYAHISNPYVLMEIQEGKNLIAYCREKQQEALVFFINLYFNDSRETATKAVSHYMFCVIFSEYGAEIEAIKNDWRRNQYNQKGAYIAPVPEMFVKKFAKRLFNKLL","1583763 1586189","TIGR ID: PG1507","hypothetical protein","Outer membrane, Inner membrane, Extracellular","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
PS51257\"[1-25]TPROKAR_LIPOPROTEIN


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541172","","","","","","1","","14","PG1507" "PG1321","1586203","1586748","546","ATGATGAAAAAAATGTATGTATTTATTTTATGTCTGATCGTTTTCGCCGGTTGCAGCCAAACGGACAATGAACCGGTTACCGAAGGGAAATCTTTGATAACGGCCGTCACAAGGAGTGGCAATGCGGAAGAAATGGCATCGGACGATGGGATGACACTCGCTTTAGACTCACTTGAACGTCTTTATGGTGCGGTTACCGCAAAATTTGTTTTCACCGGAGACGATATCGAATGGTTTAATCCGAGAACGCGGGAGATCCGGTTCAAGAATATTACTCCTTCAATAAGGGCTATTCCATGGTTCGCGAGAATAGAGATAAAAGTAGGAGAAGAGACGGTCTTTACGATTGTTGCACATATAAATGAGGTTGTCAGCCGGGCATACAATAACCTTGTACTATTGTATGAATACGAAAAGAATGCCTATTTCCTGAACGATAACTATCCGGATTATTGGGACCCGGAGGGTACTCGCCGGAATGCGGAGAAAAGAGCTCCCGGATGGGCTAAATTCCTAAAGCAATTGAAGAAGGAAGGCAAACTCAAA","7.20","0.15","20921","MMKKMYVFILCLIVFAGCSQTDNEPVTEGKSLITAVTRSGNAEEMASDDGMTLALDSLERLYGAVTAKFVFTGDDIEWFNPRTREIRFKNITPSIRAIPWFARIEIKVGEETVFTIVAHINEVVSRAYNNLVLLYEYEKNAYFLNDNYPDYWDPEGTRRNAEKRAPGWAKFLKQLKKEGKLK","1586203 1586748","TIGR ID: PG1508","hypothetical protein","Cytoplasm, Outer membrane","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
PS51257\"[1-18]TPROKAR_LIPOPROTEIN


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541173","","","","","","1","","14","PG1508" "PG1322","1586834","1587499","666","ATGCAGGATCAGGTTATCATTTGCGACTTGGATAACACGATATTCGATACTTCGAGCATCGATCCCGAATTGTTTGCGTCGTTGCTTCACAAAGCAACCGAGTATTTATCAGGAAGCTTTACCGCGGAAATCATCCTCTCGATCATTCAAGACATCGTATCCAATCCGTTCGACAGGGTATGCGAGAAGTACGGATTGCCCAAATCAATGATATTACCTGTTTTGGATGAATTGAACGGTATCTCTCTGGAGCATTCTGCCATGGTGCCGTATGAGGACTATGCCGCTTTCAGAGCGATACCGGCATATAAGATTTTGGTGACTACCGGATTCAAAAGATTACAAGAGGAAAAATTGAGAAAACTGCAGATAAGACAAGACTTCGACCGGATAATCATCAACGATCCCGTCTATGCGAATTCGAGCAAACTGGATATCTTCCGTGAATTAAGCAGGGAATTGGACCTAAAAGACCGAAAGACGTATGTGGTAGGCGATGATCCCGCTTCCGAAATAAAAGCAGGACGGGAATTGGGATTTACAACCGTCCTGATGGTCAGAAAGGAATACCTTTCCAACTCCTACACCGATTATATTATTTCCTCTTTCGAGGGCTTGAGAGACCTTTTGAGAGATAATATGGAAAACGATTACGCCCTTAGGAAG","4.60","-9.60","25497","MQDQVIICDLDNTIFDTSSIDPELFASLLHKATEYLSGSFTAEIILSIIQDIVSNPFDRVCEKYGLPKSMILPVLDELNGISLEHSAMVPYEDYAAFRAIPAYKILVTTGFKRLQEEKLRKLQIRQDFDRIIINDPVYANSSKLDIFRELSRELDLKDRKTYVVGDDPASEIKAGRELGFTTVLMVRKEYLSNSYTDYIISSFEGLRDLLRDNMENDYALRK","1586834 1587499","TIGR ID: PG1509","hypothetical protein","Cytoplasm","No significant hit found using gapped BLAST search of GenBank.","
InterPro
IPR005834
Domain
Haloacid dehalogenase-like hydrolase
PF00702\"[5-188]THydrolase
InterPro
IPR006439
Family
HAD-superfamily hydrolase, subfamily IA, variant 1
TIGR01549\"[5-179]THAD-SF-IA-v1
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.1000\"[74-211]TG3DSA:3.40.50.1000
PTHR12725\"[105-189]TPTHR12725
SSF56784\"[1-217]TSSF56784


","BeTs to 6 clades of COG1011COG name: Predicted hydrolases of the HAD superfamilyFunctional Class: RThe phylogenetic pattern of COG1011 is -mtKY-V-EB---j--o----Number of proteins in this genome belonging to this COG is 3","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Feb 22 10:51:11 MST 2001","Wed Feb 21 11:28:24 MST 2001","Wed Feb 21 11:28:24 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","Residues 3 to 188 (E-value = 4.7e-08) place PG1322 in the Hydrolase family which is described as haloacid dehalogenase-like hydrolase (PF00702)","Wed Feb 21 11:28:24 MST 2001","34541174","","","","","","1","","14","PG1509" "PG1323","1588523","1587909","615","GTGGAGAAACCCGACTATGCCGAACGTGCTTATTTTGAGGGCGTGGTGAACGCTCTTATCCATAGGACATATGATTTTCGAGGAACTGAAGTTCACGTGGAAATGTATGACGACCGTTTAGTTATCTCATCTCCCGGGGGAATCTATGGAGGGGGAGAATTGGAGCCCATGAGCGACGGCTCTTATATTTCTAAAAGACGTAATCCGATATTAGCTGACATTTTCAGCCGGCTAAGGTATATGGAGCGTCGGGGAAGTGGGATAAAGAAAATCTTTGAAGCAACGAAGAATCTTTATGGCTATACGGAAGAAAAAAAACCGTTTTTCCTTGTGAATAAACAGAATGACTTCTTCCTGACGATTCCGAATGTTAATTATCGTTCTGAGTCTGTTACCCCACATGACACCATACATGATAAAATCGCCTTGTTACTTTCATTCTGTCAAACGCCTCGCAGCAGAGAAGAGATAATGGAATTTGTGGGCCTAAGAAACCGCAATCATTTTCATAAGAAATACCTCCGTCCTTTATTAGAACAGGAAAAGATCGAAATGACCATTCCTGAAAAGCCCCAAAGTAAGAACCAGAAGTATCGAACGAAGGAAACAATCAAA","9.90","6.41","24118","VEKPDYAERAYFEGVVNALIHRTYDFRGTEVHVEMYDDRLVISSPGGIYGGGELEPMSDGSYISKRRNPILADIFSRLRYMERRGSGIKKIFEATKNLYGYTEEKKPFFLVNKQNDFFLTIPNVNYRSESVTPHDTIHDKIALLLSFCQTPRSREEIMEFVGLRNRNHFHKKYLRPLLEQEKIEMTIPEKPQSKNQKYRTKETIK","1588523 1587909","TIGR ID: PG1512","conserved hypothetical protein (with possible ATP-dependent DNA helicase domain)","Cytoplasm","Residues 1-162 show 40% similarity to AE002103, U. urealyticum conserved hypothetical protein.Residues 1-92 show 44% similarity to AE002053, D. radiodurans ATP-dependent DNA helicase RecG-related protein.Residues 4-90 show 44% similarity to AF032884, T. ferrooxidans DNA recombinase recG.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 4-90 are 36% similar to a (ATP-DEPENDENT DNA HELICASE RECG) protein domain (PD106643) which is seen in RECG_THIFE.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed May 9 16:27:20 MDT 2001","Wed Feb 21 11:49:13 MST 2001","Wed Feb 21 11:49:13 MST 2001","","Wed Feb 21 11:49:13 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1323 is similar to the carboxy-terminus (216 residues) of PG1335, a hypothetical protein. Also weak similarity to PG1065, a conserved hypothetical protein.","Mon Jun 4 15:23:31 MDT 2001","Wed May 9 16:27:20 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed May 9 16:33:50 MDT 2001","34541177","","","","","","1","","14","PG1512" "PG1324","1588612","1589925","1314","ATGGAAGCTCACAACCTCTTTACGAATATCATTATTCCCTCGATAATGGCTCTAACAGCGGTTATTACTGTTGTTATCAAGATTCAGGAACACTTTATCCTGCTAAGTAGAAATACGGCAAAACAATCTAAGAATGAGAATCTCATAAATAAAGGGTTATTGCCTAAATTTTCCCTTGGCAAAATTTTGTTTTATAGGCGATTAACCATGAAAAAAGCGATAAGCGCAGCCAAAAATGTTGCAAGGAATATAGAAGCCTCAGAGTTTGAACCAACAATAATTATTGGTATAGGACGAGGTGGATCTATTTTTGGATCTTTGATTTCATATAACTTATACCACACCCCAATCTTTAGTGTCGATCGAGAATATGAATGGCTAGAAAAGAGACATGATAAAATGTTATTTGCTTTTGACATTCCTATTCATTTAACGCGTAGAGTATTGCTGGTTGCAGGTGAAGCTCATACTGGAGGAACGATGGAGGCTTTTACTAGGTATTTGAGAAGTATAGGGGTAGGAGAAATAAAAACATGCGTTTTTTATAAGCAAAGTATATGTACACAACATATAGATTTCTGGGGAATGGAAGGGGAGAATACCATACTAATGCCTTGGCAAAACGCCCAATCCATTCGAGATAGTTTAAGTAAAGCGCAAGCGAATCAATTAAAGAAGATACAACGCCAAAGAGATTGTCCTAAGGTAATATATCTTGTGCGCCATGCAGAGACTGAGGAAAATTCAGATGGAGATCGTTTTATAGGTTCTACGAATGCTATATTAAGTGAACATGGCAGAATTCAAGCGGAACAAGTCGCTGATTTTATATCAAAAAAAGGAAAAATCGATCTTATTTACACTAGTCCTCTTCTTAGGTGTTTGGAAACGGCTCAAGTCATACAACAAAAGGTCCAATCACATTTGCTAAAAAATGATGATTTGCGTGAAATGGACTATGGCGTTTGGGAAGGACTTCAAAGGGAGGAGGTAAAGGTGCAATTCCCTGAATTATATCGTAAATATGAAGAAGACCCCTTTCATAATTATCCGAAAAGGGGAGAGAATCCTTTCGATGTCCAAGAACGAGTCAGAAGATTTTGGGAGAGAGAGATTCTTTCACTACCAAGCAGCGTCAATCAAGTTGTTATAGTGACACATAAAACAACAGGTAGAATATTATTGAATAATGTTATAGAGGGAAAGGAATCCTCTTTTAGGGGGAGACAGATGGATAATGCCTCAGTTGCAAAGATCTCTGTAAAACTAGGAATTGTAGAAGTCGAGTATGAGAATAATCGAGTATTTCTCTCT","9.60","9.74","50349","MEAHNLFTNIIIPSIMALTAVITVVIKIQEHFILLSRNTAKQSKNENLINKGLLPKFSLGKILFYRRLTMKKAISAAKNVARNIEASEFEPTIIIGIGRGGSIFGSLISYNLYHTPIFSVDREYEWLEKRHDKMLFAFDIPIHLTRRVLLVAGEAHTGGTMEAFTRYLRSIGVGEIKTCVFYKQSICTQHIDFWGMEGENTILMPWQNAQSIRDSLSKAQANQLKKIQRQRDCPKVIYLVRHAETEENSDGDRFIGSTNAILSEHGRIQAEQVADFISKKGKIDLIYTSPLLRCLETAQVIQQKVQSHLLKNDDLREMDYGVWEGLQREEVKVQFPELYRKYEEDPFHNYPKRGENPFDVQERVRRFWEREILSLPSSVNQVVIVTHKTTGRILLNNVIEGKESSFRGRQMDNASVAKISVKLGIVEVEYENNRVFLS","1588612 1589925","The gapped BLAST hits tend to correspond to residues 200-450.TIGR ID: PG1513","phosphoglycerate mutase","Cytoplasm","Several significant hits to phosphoglycerate mutase in gapped BLAST; e.g. residues 237-438 are 33% similar to gb|AAD36444.1|AE001791_6 phosphoglycerate mutase of Thermotoga maritima, residues 237-419 are 33% similar to gb|AAC07750.1| phosphoglycerate mutase of Aquifex aeolicus, residues 237-423 are 32% similar to dbj|BAB19263.1| phosphoglycerate mutase of Thermosynechococcus elongatus.","
InterPro
IPR013078
Domain
Phosphoglycerate mutase
PF00300\"[236-394]TPGAM
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.1240\"[234-437]TG3DSA:3.40.50.1240
G3DSA:3.40.50.2020\"[62-219]TG3DSA:3.40.50.2020
PTHR23029\"[235-434]TPTHR23029
SSF53254\"[234-438]TSSF53254
SSF53271\"[75-215]TSSF53271


","BeTs to 7 clades of COG0406COG name: Phosphoglycerate mutase/fructose-2,6-bisphosphataseFunctional Class: GThe phylogenetic pattern of COG0406 is ----YQvCEbR----------Number of proteins in this genome belonging to this COG is 3","***** IPB001345 (Phosphoglycerate mutase family) with a combined E-value of 1.6e-22. IPB001345A 237-269 IPB001345B 286-298 IPB001345C 306-338 IPB001345D 359-404","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Mon Mar 19 08:56:00 MST 2001","Mon Mar 19 08:56:00 MST 2001","Mon Mar 19 08:56:00 MST 2001","Wed Feb 21 11:55:09 MST 2001","Wed Feb 21 11:55:09 MST 2001","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Mar 19 08:56:00 MST 2001","-51% similar to PDB:2AXN Crystal structure of the human inducible form 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase (E_value = 6.3E_11);-52% similar to PDB:1EBB BACILLUS STEAROTHERMOPHILUS YHFR (E_value = 1.8E_10);-52% similar to PDB:1H2E BACILLUS STEAROTHERMOPHILUS PHOE (PREVIOUSLY KNOWN AS YHFR) IN COMPLEX WITH PHOSPHATE (E_value = 1.8E_10);-52% similar to PDB:1H2F BACILLUS STEAROTHERMOPHILUS PHOE (PREVIOUSLY KNOWN AS YHFR) IN COMPLEX WITH TRIVANADATE (E_value = 1.8E_10);-53% similar to PDB:1K6M Crystal Structure of Human Liver 6-Phosphofructo-2-Kinase/Fructose-2,6-Bisphosphatase (E_value = 1.8E_10);","","","Residues 235 to 429 (E-value = 4.8e-28) place PG1324 in the PGAM family which is described as Phosphoglycerate mutase family (PF00300)","Mon Mar 19 08:56:00 MST 2001","34541178","","","","","","1","","14","PG1513" "PG1325","1589943","1590929","987","ATGGATATTCAAAAGATAGCGAAGTTCTTCGAGCAGTTGCAAAATCAAGATTTTGCTCAATGGGAGGATTGTTTCGGTAAATATGACGTTGAATTTTCTGATGATACAGCTGAGACTTTTTCTCAGTCATGTGATCATGTTGTGTTGTTCAATAACAGACTCAGCAAAGTCATGTTGCTCAAAACATCAGATTCCATACTGTCAATTGGTGGTTTTCAGGCTCATAATAGGGGGAAGATAGAAGCAAAAAACAGAAAAAAAACTTTGATAACTATCCCAACTCAACTAGCAAATGACTCTTTTGGAACAAATAGGTATAGCCTTCAGGATAATGAACGTAAGCCTTCTATGGGGGGGATTTACCCTTGCAAAACAATTTTTGATTTTTCGATTCTTCTGTCAAATGAAATAGAGAAGTCTTTGTGGGGAATTGGTGAATATGTGGGAGTATATTTTTCCATTATAGACTATTCCTCAAAATACCAAGAAAATTTTGAAGAATTAATTGCTTGGACAGTAGAGCAAATTGATGAATTAAGTTCTCTTTTAAAAAGAGAGGATAATAGGACCATACTAAGGAGGATTGCGAGTCTTTTGACTGTAAAATGCCTTATTATGAGATCTAACGGGAATCATGAGATAGGTTGCAGTATCGATCATTCTTTTGCTAGGTATCTCGAAAATAAGATTCAAATACCTCACGGAAAAGCTGTCTACTTGGGCTCCCTCTTAACCCTATTATTTTATCCTGAGTGGGAAGATAAGGGCCTTTCGTTAGAGAAATTATTCAAGATCGGGCATTATGTGGGCATTACAATGTCAGATATTCAGTACTTAAAAACGCAGGATTTTTCTACTTTAGTTAAGGAGGCTTCTTTACTTCGCCCCAAACGTTCCTTTTCATTAGATCAGATACAGGAGGGGGAAGCAATGCGGATAAAAAAAGCAAAAGAGCGAGCCAATATGATTACACAAATATGGGACAGA","6.80","-0.77","38002","MDIQKIAKFFEQLQNQDFAQWEDCFGKYDVEFSDDTAETFSQSCDHVVLFNNRLSKVMLLKTSDSILSIGGFQAHNRGKIEAKNRKKTLITIPTQLANDSFGTNRYSLQDNERKPSMGGIYPCKTIFDFSILLSNEIEKSLWGIGEYVGVYFSIIDYSSKYQENFEELIAWTVEQIDELSSLLKREDNRTILRRIASLLTVKCLIMRSNGNHEIGCSIDHSFARYLENKIQIPHGKAVYLGSLLTLLFYPEWEDKGLSLEKLFKIGHYVGITMSDIQYLKTQDFSTLVKEASLLRPKRSFSLDQIQEGEAMRIKKAKERANMITQIWDR","1589943 1590929","TIGR ID: PG1514","hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
noIPR
unintegrated
unintegrated
SSF56796\"[52-327]TSSF56796


","BeTs to 7 clades of COG0371COG name: Glycerol dehydrogenaseFunctional Class: CThe phylogenetic pattern of COG0371 is amtk--VcEb-----------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Feb 21 12:18:38 MST 2001","","Wed Feb 21 12:18:38 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Feb 21 12:18:38 MST 2001","34541179","","","","","","1","","14","PG1514" "PG1326","1590920","1591930","1011","ATGGGACAGATAAAATTAGAGTATAGAGTAGAGAAGATAACTGTACCAATTCAAACCATCATTTGGGAGTTTGAATATGGGAGTACTTTTGCGTTGTATCCTTCTCATGAGAGTGTAATGCCAAGTGGTATGGGAAAGTTAAAATGGATTCAATACCATCATTCTGGAAGCCTCTTGGAAGTTTGGATTGATGACTCATTCTGGGAAATGGACTTTTTCTTTGAAAAGTTCATGACCTTATGCCTGCATAACTTATCTGATTTTGGAAATATCTGTCTTGACAAGATAGATATCTCAAGCTCAAAATTGAAAGACATATTGTTCCATGGAGAAAAGTCAATAATCCCCACTCCTTTAATTGGAACTATCTTCAAACCTTATTATCACCAGACGGTTGAGGAGAAAGTATCACAAGCAGAGCGATTTATTGATTTAGGGTTCAATGTTTTCAAAAATGATGAATGTTATTTTTTGCCCAAAGAAAAGTTGGCAAAGGAAGTTTATAATATCCATAAGGCAATAGGGAATAATGCATATTTTGTGCCTAATATAAGTTCTGTGGTTACAGACATTGACTTTATGAAAGAGCTTATAGAAATGGGCACAAGCATTTTTATGGTCAATTACTTAATTTCAGGTCTAAGCCCTATTTACAAACTTAAACAGAGTTTTCCTGAAATTACAATATGGGGGCATAGAATCGGATATCAAGCTATAAAATCTTCCATCTCGATGGATGCTTTATGTACTTTGGCACAATTAGCTGGGATTGATTTTTTACACGTAGGAACTCCTGTTTCTGAAGACATACTTGATTGCAAATGTTTAGTCAATAGGCAAAAAATGTACAATTCTAGATTCAGGCCAGTTTTCACGAAAACAACCCCAGATGTACTAAAAGAACTTCTACCTATATTTGGTTCTAGTGCTATTTATCTAGCATGCGGATACTTTAGAACTCAAAATGGGAGTATTGATTGGAATAGTGTCATTCATTGGAAATCTTTTTTT","6.50","-2.91","38837","MGQIKLEYRVEKITVPIQTIIWEFEYGSTFALYPSHESVMPSGMGKLKWIQYHHSGSLLEVWIDDSFWEMDFFFEKFMTLCLHNLSDFGNICLDKIDISSSKLKDILFHGEKSIIPTPLIGTIFKPYYHQTVEEKVSQAERFIDLGFNVFKNDECYFLPKEKLAKEVYNIHKAIGNNAYFVPNISSVVTDIDFMKELIEMGTSIFMVNYLISGLSPIYKLKQSFPEITIWGHRIGYQAIKSSISMDALCTLAQLAGIDFLHVGTPVSEDILDCKCLVNRQKMYNSRFRPVFTKTTPDVLKELLPIFGSSAIYLACGYFRTQNGSIDWNSVIHWKSFF","1590920 1591930","RbcL is a photosynthesis protein, but why does P.gingivalis need a photosynthesis protein? Other prokaryotes with an rbcL gene include: Archaeoglobus fulgidus (with 2 copies), Methanococcus jannaschii, Pyrococcus abyssi, and Synechocystis sp.TIGR ID: PG1515","ribulose bisphosphate carboxylase large subunit","Cytoplasm","Residues 118-264 show 29% similarity to AE000989, A. fulgidus ribulose-bisphosphate carboxylase large chain.Residues 118-316 show 25% similarity to AJ248286, P. abyssi ribulose-bisphosphate carboxylase large chain.Residues 118-316 show 26% similarity to B64454, M. jannaschii ribulose-bisphosphate carboxylase large chain.","
InterPro
IPR000685
Family
Ribulose bisphosphate carboxylase, large chain
G3DSA:3.20.20.110\"[118-327]TRuBisCO_large
noIPR
unintegrated
unintegrated
SSF51649\"[94-333]TSSF51649


","BeTs to 3 clades of COG1850COG name: Ribulose 1,5-bisphosphate carboxylase, large subunitFunctional Class: GThe phylogenetic pattern of COG1850 is Am-k---c-b-----------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 118-264 are 29% similar to a (LARGE CARBOXYLASE RIBULOSE BISPHOSPHATE LYASE CHAIN) protein domain (PD000044) which is seen in O28635_ARCFU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Wed May 23 18:10:49 MDT 2001","Wed May 9 17:06:31 MDT 2001","Wed Feb 21 12:28:54 MST 2001","Wed Feb 21 12:28:54 MST 2001","","Wed Feb 21 12:28:54 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed May 9 17:03:33 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed May 9 17:06:31 MDT 2001","34541180","","","","","","1","","14","PG1515" "PG1327","1591884","1593257","1374","ATGGGAGTATTGATTGGAATAGTGTCATTCATTGGAAATCTTTTTTTTAATATTATGAGGGCTTATTGTTGTAATAAACAAGCGGATTTATATCCCAAGCTTTGGGAAATTTTTGTTTCAACTACGTTTTCAAGCATTTTGACATTTTTTGCCAAGAATTCAAATATGCTGTCTACTTGGAGTATAGTTGTTGTATTTTTTGTATTGTTATTTTTTTTATTGTTATTCATGTTTCGTTTACTTCGTTTGAAACTATCCTCACTTGGCGTATTAAAGGTTTTTCCTAATAGAGACGAGGCATATAAGGATATTTTCAAAGACTTAGTAGACTCCAATGAAATACTCCTCTTAGGTTATAAAGGTAATGCTTTGTTAAGCAATTCAGACTATCCGTCAAGGCTAGAGATTTTAGAGGAATACTCTCGAGGACAAAAGATTGCAATCAAAGCATTGCTATTAAGCCCTCAGGCAAAACAATATGTCAAAAAGAGAAGTGTTGAATTAGGAGAAAAAAACTTACATCGTAATCACAGTAGAGATATAGAAGATAGCATAGTAAATTTTAGAAAAGTAAAAGAGAATGGTATTTTAGATGTAGAATGTCGTCTATTTTCAGAAGCGTTGAAGTGGAGCTTGCTTTTTTCCGATAAATATATTTTGGTTAGTTTTTATAACAATAAGGTAAGGGTTAAGCTATCTCCTTGTTTTAAACTTAGAAGAAGCTCAATGTTAGGATGGGCTTTTGAGAAACATTTTAGGGATTTATGGGAAAAAAAATCAATAGATGCCTTCACATCATATACAAGACCTTGTGTTATAGTTGTAGTTGGAGGCTCTTTTACTGGTAAATCTATAATATCCAATCATCTATCAAATAAATATCAATTTTCAGGGGTGCTTTCCACTGATATGGTTCGGAATTTTTTTCGTATTAGCACTAGAGATAGAAAAACTTATCAAACATCCACGTATAGAATGGATGATAGTGAATTAAATATTCAAAAAAATAATGTTTCGAATATGATTGAACAGATGCTGGAGATTTATCGAAGCAGGAGAGAGAAAATTATTATTGAGGGAATGCATCTCACAGAAGATTTTTTGAGAAATATAAACAAACAAGATTGTCTTATAATAGGATTAGACAACAAAAGGGATATAAATGATCGGCTGGATTTGAAAATGAAGACTACCCGTGAGGAAGTCTCTAAAAAAACAGAAGATGAAAAAAAACGAATTAATGAAATACATTATGGAATTATCGAGTGCTGTAAAAGAAACAATTTTAAGGTAGTTGAATTTCAAGATATTGAAGATGCAAAGGATAAGTGTGAACATCTGGTAGAAGAATTTTTCACTCAAAGGAGTAAAAGG","10.00","18.29","53848","MGVLIGIVSFIGNLFFNIMRAYCCNKQADLYPKLWEIFVSTTFSSILTFFAKNSNMLSTWSIVVVFFVLLFFLLLFMFRLLRLKLSSLGVLKVFPNRDEAYKDIFKDLVDSNEILLLGYKGNALLSNSDYPSRLEILEEYSRGQKIAIKALLLSPQAKQYVKKRSVELGEKNLHRNHSRDIEDSIVNFRKVKENGILDVECRLFSEALKWSLLFSDKYILVSFYNNKVRVKLSPCFKLRRSSMLGWAFEKHFRDLWEKKSIDAFTSYTRPCVIVVVGGSFTGKSIISNHLSNKYQFSGVLSTDMVRNFFRISTRDRKTYQTSTYRMDDSELNIQKNNVSNMIEQMLEIYRSRREKIIIEGMHLTEDFLRNINKQDCLIIGLDNKRDINDRLDLKMKTTREEVSKKTEDEKKRINEIHYGIIECCKRNNFKVVEFQDIEDAKDKCEHLVEEFFTQRSKR","1591884 1593257","TIGR ID: PG1516","hypothetical protein","Inner membrane, Outer membrane, Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR000850
Family
Adenylate kinase
PTHR23359\"[266-360]TAdenylate_kin
noIPR
unintegrated
unintegrated
SSF52540\"[270-452]TSSF52540


","BeTs to 3 clades of COG2074COG name: 2-Phosphoglycerate kinaseFunctional Class: NThe phylogenetic pattern of COG2074 is -mTk-----------------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Feb 21 12:30:37 MST 2001","","Wed Feb 21 12:30:37 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Feb 21 12:30:37 MST 2001","34541181","","","","","","1","","14","PG1516" "PG1328","1595559","1594942","618","ATGCTTGATGAGTTTAGCAAGAATTTTGATGCGGAAATGCAACATCATTCGCTTCCTACCGGTTTCCCAAAGGCTCGCAGACGTCGTAAAGTCTCACTTAGTGACAGTGAGATTATGACTATTTTGCCGGTGTTTCATTTCGGAACCTTTGCTAATTTCAAACATGATTATTTGCATTTCATCAAAGTGCATTTGCACTCCGAGTTCCCTTCGGCTGTGTCGTACAATCGCTTTGTGGAGCTTGAAAGCCGCGTGTTCTTCAAACTCATGCTCTTTCTTAAACTCTATGCCTTTGGAAAATGTACGGGCATCAGCTTTGTGGACAGCACTATGATTCCTGTCTGTCATAATTTGAGGCGTTATGCCAATAAAGTATTCAAAGGGATAGCCACGAACGGAAAAGGTACCATGGGATGGAGTCACGGATTTAAACTTGATTTCGTATGCAATGATCGTAGAGAGTTTATTACGTTTTGTCTTACAGGTGCTAACGTGGATGACAGAAACCCGAAGGTCTGGCAGGTTCCGGCTAAAGAACTATACGGAAAACTCTTTGCAGATAAGGGATATTCTCGCCTAAACTCTTTGAAAGCCTCTTTGATGACGGCATCCATCTTG","10.40","12.96","23724","MLDEFSKNFDAEMQHHSLPTGFPKARRRRKVSLSDSEIMTILPVFHFGTFANFKHDYLHFIKVHLHSEFPSAVSYNRFVELESRVFFKLMLFLKLYAFGKCTGISFVDSTMIPVCHNLRRYANKVFKGIATNGKGTMGWSHGFKLDFVCNDRREFITFCLTGANVDDRNPKVWQVPAKELYGKLFADKGYSRLNSLKASLMTASIL","1595559 1594942","TIGR ID: PG1518","ISPg3-related (IS195-related) transposase","Cytoplasm","PG1328 is very similar to the previously sequenced gb|AAC26596.1, a predicted ISPg3 (IS195) sequence in GenBANK. Residues 26-190 are 46% similar to a transposase from P.salmonis (AF184152).","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 127-194 are 50% similar to a (TRANSPOSASE PLASMID PROTEIN ELEMENT) protein domain (PD004652) which is seen in O87010_PORGI.Residues 67-124 are 58% similar to a (PROTEASE PUTATIVE TRANSPOSASE PLASMID) protein domain (PD190029) which is seen in O87010_PORGI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Feb 8 16:26:11 MST 2001","Thu Feb 8 16:26:11 MST 2001","Thu Feb 8 16:20:57 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","PG1328 is similar to PG0236, PG0178, PG0718, PG0919, PG1115, PG1663, PG0273, all ISPg3-related transposases and fragments. Residues 1-194 are 48% similar to residues 11-203 of PG0236.","Thu Feb 8 16:20:57 MST 2001","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","Lewis JP, Macrina FL, IS195, an insertion sequence-like element associated with protease genes in Porphyromonas gingivalis. Infect Immun 1998 Jul;66(7):3035-42, PubMed: 9632563.","Kehrenberg C, Werckenthin C, Schwarz S, Tn5706, a transposon-like element from Pasteurella multocida mediating tetracycline resistance. Antimicrob Agents Chemother 1998 Aug;42(8):2116-8, PubMed: 9687418.","Thu Feb 8 16:26:11 MST 2001","Thu Feb 8 16:26:11 MST 2001","1","","14","PG1518" "PG1329","1595848","1597485","1638","ATGAGTACAGATATAAAAAAGAAAATTGTAGTTCCAAAAGACCTACATGATTCTAAATTACTATGCTTTCTTCATCCTAATAGATTTGAAACTAAGGAAGAAAAACAAGCTATTGAATTGTTACATAAGATTTGCATGACAAATCTGACTAATTTTCATGAATCAAATCAAATTAAAGATTTAATCCTAACCAAGGAAGAACAAAAGCTTGTTTTATTTCACGAATGGAATAATTCTGAAAACATAGAAGTCCAATCACGCTGTAATGATGTTCTTTGTAGATTTGAGAAAGATAAACGTTCCATAAAAGTAAAAATATCAAACAATTATCTTGTAGCTTATCAATTGTTTGGAAACATCGAATTCTTAATTCGATCAATTACGGTTCGTGATATTAAGATTCTTAATACTGATGATTTTTTGAAAGACATCATATCTGCAATTAACGATAAGTTTAGTCATCCTTTTTGGATTCAAAAAATTGTCAATTCTATAAAAAAATCATACCCTATAGAAAAACTCGAAGAACTGTGCAATTATATTGAACGTCAGAAGAACAGATTGATTAACGGCAATTATTCTGAAAAAAGAGAGTATATAAAAGCCCAATACTCACTTAAAGTAATAAGCGAACAGGTGTTTCACAAAGAAATGGCCTTATGCTTTGAGGGTGAAGCAGACGCCATCATAAGCGACAAAAAGCCAAATACTTTTTACCTAAATTTAGTTGATCTTTACCAAAGTGCATACAACGAAATTTTTCAAATTAAAAAGCAGGCTCCAGAAGAATTTGAAAGGATAAAAGATAAGTTGTTACAAGAAAAGTCTAATTTTATGAAGATGCTTTCTCTTTATGGCATTAAAACTCAAATGGAACTCTCTGATGATTTCATTAAATGTGTAAAAAAAATTGTTTCAAAAATTACTATAGGTAATTTTATTGATACAATTAACCTGATGCTCTCAATTCCTTTCATTACTCCGAAAGAAGTCAGTGCCTATGAAGCAACGGTAAGGAAGGCAAGCCCTATTTCTTCGATGTTTGGGCACAAACAGTTAAATGCGAAAGGAGATATCGTTGGTATAGCAGAGCCAGAGAAGTCTTTAAAAACAGAAGCTCATGTCTATTTTAGACAAAAAAGACTATACGCAATATGGACATACATCAATCTTCATCAATGGTCAAATATAAAGTCAGAAGAGAATTTTATCTATCTCTATTTGCAAAAGAAAAAGCCAACATATATAGAAGAAGAAAATTTGATATTTTGGACTAAAGGATTTGTTGCAGGCCTAAATAAAGACTTTATAAGTGCATCTCATATCCTAATGCCATATTTAGAGCATGCGTTGCGTAATATTGCTGAAATCAAGAAAGGAAACATAACTACTTTAGAGAAAAAACGACAAGAGGCTCCTTCTTTAGGTGTAATTTTCCCTATGCTTCAAGGTGTAATTGAAGAAGAAATACTGTATGAAATAGAATCCTTTCTAAATCATGGGATAGATGTCAATTTTAGGAATAATTTATCTCATGGACTTCTAACCCCTTTTGAAATTGAAAAATATGGGATTTATTTGTGGTGGATATGCTTAAAACTATATTTTGAAGAAAAGAATATGATAAAAATCGCTCCC","8.40","8.05","64206","MSTDIKKKIVVPKDLHDSKLLCFLHPNRFETKEEKQAIELLHKICMTNLTNFHESNQIKDLILTKEEQKLVLFHEWNNSENIEVQSRCNDVLCRFEKDKRSIKVKISNNYLVAYQLFGNIEFLIRSITVRDIKILNTDDFLKDIISAINDKFSHPFWIQKIVNSIKKSYPIEKLEELCNYIERQKNRLINGNYSEKREYIKAQYSLKVISEQVFHKEMALCFEGEADAIISDKKPNTFYLNLVDLYQSAYNEIFQIKKQAPEEFERIKDKLLQEKSNFMKMLSLYGIKTQMELSDDFIKCVKKIVSKITIGNFIDTINLMLSIPFITPKEVSAYEATVRKASPISSMFGHKQLNAKGDIVGIAEPEKSLKTEAHVYFRQKRLYAIWTYINLHQWSNIKSEENFIYLYLQKKKPTYIEEENLIFWTKGFVAGLNKDFISASHILMPYLEHALRNIAEIKKGNITTLEKKRQEAPSLGVIFPMLQGVIEEEILYEIESFLNHGIDVNFRNNLSHGLLTPFEIEKYGIYLWWICLKLYFEEKNMIKIAP","1595848 1597485","TIGR ID: PG1519","conserved hypothetical protein","Cytoplasm","This sequence corresponds to gi:34397498 in Genbank.Its nearest neighbor in the NR database is gi:21107687 from Xanthomonas axonopodis pv. citri str. 306.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Mar 8 11:11:11 2005","Tue Mar 8 11:11:11 2005","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 8 11:11:11 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541182","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Tue Mar 8 11:11:11 2005","","1","","14","PG1519" "PG1330","1599196","1598150","1047","ATGAAAATTCTGTATGAAGACAGGTATTTCGGTTTGCGGGAGATAGCCGCCGGCGCCTTGGGAGATGATGTTCCGTGGAAATCCGCATTGCGTGCATTCGTATCGGAATGGTGCGATTCACGGGATTTTATAGAGGTGCGTACTTCCGGCTCTACGGGTATGCCCAAGCTTATCCATCTGCCTAAAAAAGCGATGGCGGCTTCGGCACGGCTGACCAATGCTTTTTTCGACATATCCCGGGATTCCGTACTGATGCTCTCTCTTCCGCTTTCTTATATAGCCGGTAAAATGATGGTGGTGAGGGCATTCGAAGCAGGGGCCGTTCTGTTGCCGGAACCTCCCTCTTCTTTGCCTCTTTCCTCCCTGCATACGAAGGTCAAACTCGGAGCGCTCGTACCCCTGCAAGTGGAGGACATCCTGTCATCGGGGGAAAGCCACCGGTTCGAAAAGGTGGAAAATCTTTTGATAGGAGGAGGCCCCCTGGCACGGACTACGAGAGAGCGGTTGGCGGATATTCCCACCCGTTTTTTCGCTACTTACGGAATGACGGAAACGGCATCCCATACGGCTCTTATGCGATTGAACGGAGAGGGAGCTTCCGCTTGTTTCGAGGCTTTGGAAGGAGTGCGTTTCCGCCGGGACGAATCCGGATGTCTTTGCATACATGCTCCCCATATTCGGGAATCGGAGTTTTGCACCCGGGATATGGTGGAGCTCGTAGATGAAAGGCATTTCGTGTGGAAGGGGCGTTTGGATTACGTAATCAATAGCGGGGGGATCAAATTTTCCCCCGAGGAACTGGAAGACCTCGTTTTCCGGGAGATGGAAGTCCCTTTTTATATTACTTCTCTGCCCGATAAACGTCTCGGGGAACGTATCGTCATGGTGGTGGAGGATATGGAGTGGCCGCCGGAAAAGCGCAGGAGGATGGATGCGGTTTTCAGAAGACTGTTGCCCCGTCATGCCATCCCCCGGGAGATTATATATACGGAACGCATTCCGAGGACGAAATCCGGAAAGATTATCCGTTCCCGAAATATCGACTCT","7.80","2.72","39532","MKILYEDRYFGLREIAAGALGDDVPWKSALRAFVSEWCDSRDFIEVRTSGSTGMPKLIHLPKKAMAASARLTNAFFDISRDSVLMLSLPLSYIAGKMMVVRAFEAGAVLLPEPPSSLPLSSLHTKVKLGALVPLQVEDILSSGESHRFEKVENLLIGGGPLARTTRERLADIPTRFFATYGMTETASHTALMRLNGEGASACFEALEGVRFRRDESGCLCIHAPHIRESEFCTRDMVELVDERHFVWKGRLDYVINSGGIKFSPEELEDLVFREMEVPFYITSLPDKRLGERIVMVVEDMEWPPEKRRRMDAVFRRLLPRHAIPREIIYTERIPRTKSGKIIRSRNIDS","1599244 1598150","TIGR ID: PG1521","O-succinylbenzoate--CoA ligase","Cytoplasm","Many weak hits using gapped BLAST to o-succinylbenzoate-CoA ligase. Residues 48-298 showed 25% similarity to AE006072, P. multocida. Residues 32-317 showed 26% similarity to AE000316, E. coli. Residues 48-302 showed 27% similarity to AE004272, V. cholerae.","
InterPro
IPR000873
Domain
AMP-dependent synthetase and ligase
PF00501\"[48-212]TAMP-binding
noIPR
unintegrated
unintegrated
G3DSA:3.30.300.30\"[252-345]TG3DSA:3.30.300.30
G3DSA:3.40.50.980\"[39-197]TG3DSA:3.40.50.980
PTHR11968\"[44-346]TPTHR11968
PTHR11968:SF14\"[44-346]TPTHR11968:SF14
SSF56801\"[48-343]TSSF56801


","BeTs to 5 clades of COG0365COG name: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligasesFunctional Class: IThe phylogenetic pattern of COG0365 is A-T-YQ-cEBr-u--------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 11:47:46 MDT 2001","","Thu Jun 14 11:47:46 MDT 2001","Thu Jun 14 11:47:46 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:47:46 MDT 2001","Thu Jun 14 11:47:46 MDT 2001","","","Wed Feb 21 12:48:47 MST 2001","Mon Jun 25 15:28:57 MDT 2001","Wed Feb 21 12:48:47 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed May 9 17:12:38 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jun 25 15:28:57 MDT 2001","34541183","","","","","","1","","","PG1521" "PG1331","1600263","1599196","1068","ATGCTTAAGGCCGATTATATCCCCTATACCTTGAAATTCAAGGAGCCGGCAGGGACGTCGCGGGGCGTTTTGCATACCAAGCAGACTTATTTCGTGAGGGTATACGACGATACTTTCCCCTCTCGGGCAGGTTACGGCGAGGCGGCTTTATTCCGGGGATTGAGTGCGGAAGAGGGAGCGGATTACGAAGAGCGGCTGGCGGAGGTTTGCAACGGCGTTTGCGGGTTTACTCCCGACGCCTGGCAGGCATATCCTTCTTTGTGTTTCGGGATGGAAACGGCGCTTGCCGACTTCGAGGGCGGGGGATTGCTTTTTCCCTCGGCTTTCACTTCCGGCGAGGCGGGGATTCCCATAAACGGTTTGATATGGATGGGGAGCTTCGAAGCTATGCGAAGGCGTGTGGAGGAGAAACTGGAGGAGGGCTTCCGCTGTATAAAACTTAAAATCGGGGCTATCGATTTCGAATCGGAACTCGCTTTGGTACGGATGGTCCGCGAGAAATTCGGGAAGGATGCCGTTATTCGTCTCGATGCGAACGGGGCTTTCGAAGAAGAGGAGGCGATGTATAAATTGGAACGTTTATCCGCCTTCGGTATCCATTCGGTGGAGCAACCCGTCAGGGACGGGAATTACGCGGCTATGCGCAGGATTGCGGCGAATGCCCCTGTTGCCGTGGCCTTGGATGAGGAATTGATAGGCTTATACGATGAAACTTCCAAACGGGAGATGTTGGCTTATATCCGTCCGGCCTGTATCGTACTCAAGCCTTCACTTGTCGGAGGTTTTTACGGCACGGAGCAATGGATAAGGATTGCCGAATCCATGGGGATAGCGTGGTGGATCACTTCCGCTTTGGAGTCGAATATAGGCCTGAATGCCATTGCCCAGTGGACCTATATTCACGGGAATCCCCTGCCTCAGGGATTGGGTACGGGCGCTTTGTTTACGAATAATACGGATACGCCTCTTTATACGGAAGGCGGTTATTTGAGATATGCCGCAGGGAAGAGATCTTCCCGTTGCGATGTCGAGGCCTTGTTCCGGGAAAGATATGGAAACGGAGGCTTA","4.90","-10.52","39350","MLKADYIPYTLKFKEPAGTSRGVLHTKQTYFVRVYDDTFPSRAGYGEAALFRGLSAEEGADYEERLAEVCNGVCGFTPDAWQAYPSLCFGMETALADFEGGGLLFPSAFTSGEAGIPINGLIWMGSFEAMRRRVEEKLEEGFRCIKLKIGAIDFESELALVRMVREKFGKDAVIRLDANGAFEEEEAMYKLERLSAFGIHSVEQPVRDGNYAAMRRIAANAPVAVALDEELIGLYDETSKREMLAYIRPACIVLKPSLVGGFYGTEQWIRIAESMGIAWWITSALESNIGLNAIAQWTYIHGNPLPQGLGTGALFTNNTDTPLYTEGGYLRYAAGKRSSRCDVEALFRERYGNGGL","1600266 1599196","TIGR ID: PG1522","chloromuconate cycloisomerase","Cytoplasm","Many weak significant hits using gapped BLAST to chloromuconate cycloisomerases. Residues 91-290 are 30% similar to AB024746, Burkholderia sp. Residues 124-297 are 26% similar to AJ002571, B. subtilis. Residues 91-335 are 30% similar to AF161263, P. aeruginosa.","
InterPro
IPR001354
Family
Mandelate racemase/muconate lactonizing enzyme
PTHR13794\"[98-334]TMR_MLE
PS00909\"[174-205]?MR_MLE_2
InterPro
IPR013342
Domain
Mandelate racemase/muconate lactonizing enzyme, C-terminal
PF01188\"[127-224]TMR_MLE
noIPR
unintegrated
unintegrated
G3DSA:3.20.20.120\"[122-314]TG3DSA:3.20.20.120
PTHR13794:SF7\"[98-334]TPTHR13794:SF7
SSF51604\"[111-332]TSSF51604
SSF54826\"[1-103]TSSF54826


","BeTs to 5 clades of COG1441COG name: O-succinylbenzoate synthase and related enzymesFunctional Class: HThe phylogenetic pattern of COG1441 is a-----vcEBrh---------Number of proteins in this genome belonging to this COG is 1","***** IPB001354 (Mandelate racemase/muconate lactonizing enzyme family) with a combined E-value of 4.5e-15. IPB001354B 163-217 IPB001354C 250-294","Residues 113-323 are 32% similar to a (CYCLOISOMERASE ISOMERASE MUCONATE AROMATIC HYDROCARBONS) protein domain (PD003216) which is seen in O87609_PSEAE.Residues 139-301 are 28% similar to a (PROTEIN DEHYDRATASE GLUCARATE GDH LYASE PROBABLE) protein domain (PD005457) which is seen in MANR_PSEPU.","","Thu Jun 14 11:48:09 MDT 2001","","Thu Jun 14 11:48:09 MDT 2001","Thu Jun 14 11:48:09 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:48:09 MDT 2001","Thu Jun 14 11:48:09 MDT 2001","","","Wed Feb 21 13:02:17 MST 2001","Mon Jun 25 15:33:35 MDT 2001","Wed Feb 21 13:02:17 MST 2001","Mon Jun 25 15:33:35 MDT 2001","Mon Jun 25 15:33:35 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed May 9 17:19:43 MDT 2001","-51% similar to PDB:1JPM L-Ala-D/L-Glu Epimerase (E_value = 2.5E_15);-51% similar to PDB:1TKK The Structure of a Substrate-Liganded Complex of the L-Ala-D/L-Glu Epimerase from Bacillus subtilis (E_value = 2.5E_15);-46% similar to PDB:1NU5 Crystal structure of Pseudomonas sp. P51 Chloromuconate lactonizing enzyme (E_value = 2.0E_12);-45% similar to PDB:1SJA X-ray structure of o-Succinylbenzoate Synthase complexed with N-acetylmethionine (E_value = 4.4E_12);-45% similar to PDB:1SJB X-ray structure of o-succinylbenzoate synthase complexed with o-succinylbenzoic acid (E_value = 4.4E_12);","","","Residues 112 to 351 (E-value = 5.8e-07) place PG1331 in the MR_MLE family which is described as Mandelate racemase / muconate lactonizing enzyme, C-terminal domain (PF01188)","Mon Jun 25 15:33:35 MDT 2001","34541184","","","","","","1","","","PG1522" "PG1332","1601081","1600266","816","ATGAGAGAATGGAAGGAAATAAAGAAATACGAGGATATTTTATTCGAGTATTTCGAGGGAATAGCCAAGATAACCATCAACCGGCCTAAGGTTTATAATGCTTTCCGGCCGCAGACGAATGCCGAAATTCTGGATGCCATGGATATATGCAGGGAGCGTCCGGATATAGGCGTAGTCGTTTTGACCGGAGCCGGCGATAAGGCCTTTTGTTCGGGAGGAGATCAGCATGTGAAAGGAATGGGAGGATATATCGACGGAGGAGGTGTTCCCCGATTGAATGTATTGGATGTGCATAAGGCCATCCGTTCTTTGCCCAAGCCCGTCATTGCCATGGTCAACGGTTATGCCATAGGAGGAGGGCATGTGCTTCATGTGGTATGCGATTTGACGATAGCGGCCGAGCATGCCCGTTTCGGACAGACCGGGCCCAAGGTCGGGAGTTTCGACGGAGGTTTCGGTTCTTCTTATCTTGCCCGTTGTGTAGGTCAGAAGAAGACGAGGGAGATCTGGTTTTTATGCCGTCAGTATACCGCTGCGGAGGCCGAAGCTATGGGGATGGTAAACAAGGTGGTACCTGCCGCGAGGTTGGAGGACGAAACGGTGGACTGGTGCAAGACGATATTGAGCCGGAGTCCGATGGCGATCCGGATGATTAAACGGGCTTTGAATGCGGAGCTCGACGGTCAGAGAGGATTGATGGAGTTTGCAGGGGATGCCACCCTTATGTATTATCTTATGGAAGAAGCTCAGGAGGGGAAAAATGCCTTTTTGGAAAAGCGGACTCCGGATTTCGACAAGTTCCCTAAATTCCCGGGT","7.70","1.93","30121","MREWKEIKKYEDILFEYFEGIAKITINRPKVYNAFRPQTNAEILDAMDICRERPDIGVVVLTGAGDKAFCSGGDQHVKGMGGYIDGGGVPRLNVLDVHKAIRSLPKPVIAMVNGYAIGGGHVLHVVCDLTIAAEHARFGQTGPKVGSFDGGFGSSYLARCVGQKKTREIWFLCRQYTAAEAEAMGMVNKVVPAARLEDETVDWCKTILSRSPMAIRMIKRALNAELDGQRGLMEFAGDATLMYYLMEEAQEGKNAFLEKRTPDFDKFPKFPG","1601087 1600266","TIGR ID: PG1523","dihydroxynaphthoate synthase (naphthoate synthase)","Cytoplasm","Residues 1-271 have 63% similarity to AF008220, B. subtilis dihydroxynaphthoate synthase.Residues 3-271 have 66% similarity to D90906, Synechocystis sp. dihydroxynaphthoate synthase.Residues 8-271 have 63% similarity to AE006306, L. lactis dihydroxynaphthoate synthase.This sequence is similar to BT4702.","
InterPro
IPR001753
Domain
Enoyl-CoA hydratase/isomerase
PF00378\"[22-192]TECH
PS00166\"[109-129]TENOYL_COA_HYDRATASE
InterPro
IPR010198
Family
Naphthoate synthase
TIGR01929\"[10-267]TmenB
noIPR
unintegrated
unintegrated
G3DSA:3.90.226.10\"[3-265]TG3DSA:3.90.226.10
PTHR11941\"[15-264]TPTHR11941
SSF52096\"[1-271]TSSF52096


","BeTs to 5 clades of COG0447COG name: Dihydroxynaphthoic acid synthaseFunctional Class: HThe phylogenetic pattern of COG0447 is a------cebrh---------Number of proteins in this genome belonging to this COG is 1","***** IPB001753 (Enoyl-CoA hydratase/isomerase) with a combined E-value of 9.3e-50. IPB001753A 24-35 IPB001753B 58-80 IPB001753C 106-132 IPB001753D 153-192","Residues 186-264 are 64% similar to a (HYDRATASE PROTEIN ENOYL-COA LYASE ACID FATTY METABOLISM) protein domain (PD001362) which is seen in P73495_SYNY3.Residues 99-185 are 81% similar to a (PROTEIN HYDRATASE ENOYL-COA ACID FATTY ISOMERASE LYASE) protein domain (PD000432) which is seen in P73495_SYNY3.Residues 8-74 are 61% similar to a (PROTEIN HYDRATASE ENOYL-COA ACID FATTY METABOLISM LYASE) protein domain (PD000523) which is seen in O34567_BACSU.","","Thu Jun 14 11:48:24 MDT 2001","","Thu Jun 14 11:48:24 MDT 2001","Thu Jun 14 11:48:24 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:48:24 MDT 2001","Thu Jun 14 11:48:24 MDT 2001","","","Wed May 9 17:26:27 MDT 2001","Mon Jan 5 15:28:33 2004","Wed Feb 21 13:11:51 MST 2001","Mon Jun 25 15:30:22 MDT 2001","Mon Jun 25 15:30:22 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 5-264 are 32% similar to PG0961, 3-hydroxybutryl-CoA dehydratase.","Mon Jun 25 15:30:22 MDT 2001","Mon Mar 19 09:05:51 MST 2001","-62% similar to PDB:1Q51 Crystal Structure of Mycobacterium tuberculosis MenB in Complex with Acetoacetyl-Coenzyme A, a Key Enzyme in Vitamin K2 Biosynthesis (E_value = 3.7E_66);-62% similar to PDB:1Q52 Crystal Structure of Mycobacterium tuberculosis MenB, a Key Enzyme in Vitamin K2 Biosynthesis (E_value = 3.7E_66);-62% similar to PDB:1RJM Crystal Structure of MenB (Rv0548c) from Mycobacterium tuberculosis (E_value = 3.7E_66);-62% similar to PDB:1RJN The Crystal Structure of MenB (Rv0548c) from Mycobacterium tuberculosis in Complex with the CoA Portion of Naphthoyl CoA (E_value = 3.7E_66);-50% similar to PDB:2HW5 The crystal structure of human enoyl-coenzyme A (CoA) hydratase short chain 1, ECHS1 (E_value = 5.3E_28);","","","Residues 22 to 192 (E-value = 1.8e-66) place PG1332 in the ECH family which is described as Enoyl-CoA hydratase/isomerase family (PF00378)","Mon Jun 25 15:30:22 MDT 2001","34541185","","","Driscoll,J.R. and Taber,H.W. 1992. Sequence organization and regulation of the Bacillus subtilis menBE operon. J. Bacteriol. 174 (15): 5063-5071. PubMed: 1629163.","","Mon Mar 19 09:05:51 MST 2001","1","","","PG1523" "PG1333","1602839","1601109","1731","ATGGATTCGGATTATTCGGATAAGAAAGGCGTAAGCGTATTGATGGATTTATTCGAGATGAAGGGCATACGTAAACTCGTTATGTCGCCCGGTTCGCGAAATGCTCCTCTTCTGTTTTCTTTCTCCCGGAATCCCGCTTTCGAGAAATACGTGATTGCGGATGAGCGTTCCGCCGGTTTTTTCGCTCTCGGATTGGCTTTGGCCTCGGGTGAAGCCGTAGGATTGGTTTGTACTTCCGGTACGGCCATGTTGAATTATGCTCCTGCCGTTGCCGAGGCTTTTTACAGGGGGATTCCTTTGGTCGCGGTAACGGCCGACCGTCCGGCCGAATGGATCGACCAGGACGAGGGACAGACGATTCGACAGGAGGGAGCTATGGCCGGTTTCGTTAAGTCGTATTGCAGCTTGAGAGCGGAATTCGATACTTCCGCCTCGGCATGGTATGCCAATCGCCGTTTGAATGAGGTGTTGAACCATGCCCTGATGCCCCGGCGAGGACCCGTACACATCAATATGTCGTTTTGCGAACCGCTATACGGGACTTCCTCCGGATATTCCGGAAAAGAGCGGGCGATAACGTTCGTGAGGGAACGGCAAGAATTGCCGGAAGAGGTATGGGATATGCTCGTAAAGCGGTTTTTGGAAGCTCCCAGAGTGATGATCGTCGCCGGTTTTTATCCTCCCGACGAAGACGTGTCCGCCGCATTGCAGGATATATGCAAATTTCCCCATACGGTTTTGTTTGCCGAGAGTCTCTCCAATATCCGTACGGATACGGGGATATGTACGGCAGACCGGGTATTGGCTGCAGCCGGAGAAGACGAATCGCTTTATCCGGAACTCCTTATTTCTTTCGGAGGCTCGTTGATTTCCCGTATGTTGAAAACTTTTCTACGGAGGGCGAAACCTGCGGAGCATTGGGGGATAGACGAGAGGTTTCCGGCTCCGGACACTTTCTGTGCGCTTACCCATCATATATGTACGGGAGCTTCGGGCTTTTGGAAGGAATTCGCCGGACGGTTGAAAGACAAGGCACCGGAGTCCCTTTCACCGGAAGGAATTTCCTATGCCGGTTCGTGGCAGAAGATAAAACGGAAGGCGGACCTCCTGCACCGTACCTTTATGGCGGATGCGGGGTGGAGCGACCTCAAGGCTTTCGAAGTGATTTTAAGGCATATTCCCCATGATGCTGCTTTGCATGCGGCTAATTCCACGCCCGTACGTTATCTCCAATTATTCGAACACGCGCATTATGCGGGAGGAGAATGGAGCAATCGCGGAACCAACGGAATCGAGGGGGCCACTTCCACGGCAATGGGGTTTTCCGAAGTATATTCCGGAACCACCCTTTTGATTACGGGAGATCTGAGTTTTATGTACGATTCCAATGCTTTGTGGATGCCTTATGTAAACGGGCGGATACGGGTAATCGTGATGCGTAACGGAGGAGGGGGGATATTCCGTTTTATTCCCGGGCCGGATTCTTTGAAGGAATTGGAGACCTGTTTCGAGACTCCGCTCGAAGTTCCCGTAAGGGAAATGGCCGGAGCTTACGGATGGAGATATATGAAGGCCGTTTCCGCCGAAGAACTGGAAACGGTGTTGCCTTCGTTTTTCGCATCCGGCGACAGGGCGGTCCTGCTCGAGGTGGAAACGCCGAGGTTTGAAAACGCCCCTGTATTGAAATCGTATTTTACATATATTTCGGGGGAGTCTTACCCCGTAAACCGA","5.70","-9.43","63929","MDSDYSDKKGVSVLMDLFEMKGIRKLVMSPGSRNAPLLFSFSRNPAFEKYVIADERSAGFFALGLALASGEAVGLVCTSGTAMLNYAPAVAEAFYRGIPLVAVTADRPAEWIDQDEGQTIRQEGAMAGFVKSYCSLRAEFDTSASAWYANRRLNEVLNHALMPRRGPVHINMSFCEPLYGTSSGYSGKERAITFVRERQELPEEVWDMLVKRFLEAPRVMIVAGFYPPDEDVSAALQDICKFPHTVLFAESLSNIRTDTGICTADRVLAAAGEDESLYPELLISFGGSLISRMLKTFLRRAKPAEHWGIDERFPAPDTFCALTHHICTGASGFWKEFAGRLKDKAPESLSPEGISYAGSWQKIKRKADLLHRTFMADAGWSDLKAFEVILRHIPHDAALHAANSTPVRYLQLFEHAHYAGGEWSNRGTNGIEGATSTAMGFSEVYSGTTLLITGDLSFMYDSNALWMPYVNGRIRVIVMRNGGGGIFRFIPGPDSLKELETCFETPLEVPVREMAGAYGWRYMKAVSAEELETVLPSFFASGDRAVLLEVETPRFENAPVLKSYFTYISGESYPVNR","1602842 1601109","TIGR ID: PG1524","2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase (2-oxoglutarate decarboxylase) (alpha-ketoglutarate decarboxylase) (menaquinone biosynthesis protein)","Cytoplasm","Residues 11-554 have 30% similarity to AF008220, B. subtilis 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase.Residues 7-535 have 30% similarity to D90857, E. coli 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase.Residues 12-563 have 29% similarity to D64002, Synechocystis sp. 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase.","
InterPro
IPR004433
Family
Menaquinone biosynthesis protein
PIRSF004983\"[4-571]TMenD
TIGR00173\"[1-571]TmenD
InterPro
IPR012001
Domain
Thiamine pyrophosphate enzyme, N-terminal TPP binding region
PF02776\"[8-178]TTPP_enzyme_N
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.970\"[9-174]T\"[365-566]TG3DSA:3.40.50.970
PTHR18968\"[279-571]TPTHR18968
PTHR18968:SF3\"[279-571]TPTHR18968:SF3
SSF52467\"[167-401]TSSF52467
SSF52518\"[7-172]T\"[370-576]TSSF52518


","BeTs to 4 clades of COG1165COG name: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthaseFunctional Class: HThe phylogenetic pattern of COG1165 is -------cebrh---------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 355-563 are 31% similar to a (MEND 4-CYCLOHEXADIENE-1-CARBOXYLATE SYNTHASE MENAQUINONE) protein domain (PD011752) which is seen in Q55725_SYNY3.Residues 22-172 are 31% similar to a (THIAMINE FLAVOPROTEIN PYROPHOSPHATE LYASE SYNTHASE) protein domain (PD000376) which is seen in MEND_BACSU.","","Thu Jun 14 11:48:52 MDT 2001","","Thu Jun 14 11:48:52 MDT 2001","Thu Jun 14 11:48:52 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:48:52 MDT 2001","Thu Jun 14 11:48:52 MDT 2001","","","Mon Mar 19 09:14:46 MST 2001","Mon Jun 25 15:42:28 MDT 2001","Wed Feb 21 13:28:59 MST 2001","","Mon Jun 25 15:42:28 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Mar 19 09:14:46 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jun 25 15:42:28 MDT 2001","34541186","","","Rowland,B., Hill,K., Miller,P., Driscoll,J. and Taber,H. 1995. Structural organization of a Bacillus subtilis operon encodingmenaquinone biosynthetic enzymes. Gene 167 (1-2): 105-109. PubMed: 8566759.","","Mon Mar 19 09:14:46 MST 2001","1","","","PG1524" "PG1334","1603958","1602855","1104","ATGAAAGAGGCGGTGACTCATTGTCTGGATTCTTTCGTGCCGTTTTATTTATATCGTTTGCCCGAGCGGGAGGGAGGACGGCTGGGTTTCGGAGTTTCGCTGAGCGGACGAATAGAGCGTAAGACGGCGGATTTTTCCGTTCCCTGTTTTGTTGCGGCTCCTTTCGATTCGGAAGAAGAGGCTTACTTCATTCCGGGGGAATTCGAATGCGAGGGAGATTTGACGGATAAGGCGGTGCGGGATTTGAAGGATGCCGTATTCTCCGGTATCCGCATGCCTTGCCCGGAATCCGGAGATATGGATAAGGAAGCTTACCGTACGGCTTTTGAGGAAATCATGCGCCGGATAGATTCCGGGGTATTGGAAAAGGTGGTTTTATCCCGCACCTTGACCCTTAAGAGGGGCGATTCCGGATTCTCCGACGTTTTTTCTTATTGGGAGTTGCTCCGGAGGGCTTATCCCCATGCTTTCGTTTTCCTTTATTTTATTCCGGGAAAGGGAGTATGGGCGGGAGCGAGTCCGGAACTCCTGTTGGATTATACGAAAGGACGTGTAAAGACGATGGCTTTGGCCGGAACCAGACCCGTATCTTTCGAAGGCGAGTTGCTTAAGCCGTGGACACAAAAAGAGATAAGAGAGCAAGGAGTGGTCAGGGACTATATCAGGGAAGTGCTTGAGAACCACTGTCGCAGCGTGGAGATGTCGGAGACCCGTACCTTTATGGCCGGGAATATTTGCCATTTGTGTACGGATTTTACGGCTTTGACCGGAGACGGCTTAGAAAGCTTGCTCAAGGCGCTTCATCCTACCCCGGCTCTCGGCGGATTCCCCCGTAAGGAAGCTTTGGCGTGTATCCGGGAGGTCGAGGTGCATGAACGCAAATTTTACGGAGGATATTTGGGGCCTGTGGGTAAGGATGCTGCGAGATTGTATGTGAACATCCGCTCGATGGAATTGTTTCCCGGGGCATTCCGGCTTTATGTGGGAGGAGGTATAAACGGAGATTCGGTATTCGAAGACGAATGGGAAGAGACCTCGGATAAGGCGGCTACTCTTTTGAATGTGCTTGGAATACATTCCGTCGGAGATAAGGCGGACTATAAA","5.20","-9.65","41221","MKEAVTHCLDSFVPFYLYRLPEREGGRLGFGVSLSGRIERKTADFSVPCFVAAPFDSEEEAYFIPGEFECEGDLTDKAVRDLKDAVFSGIRMPCPESGDMDKEAYRTAFEEIMRRIDSGVLEKVVLSRTLTLKRGDSGFSDVFSYWELLRRAYPHAFVFLYFIPGKGVWAGASPELLLDYTKGRVKTMALAGTRPVSFEGELLKPWTQKEIREQGVVRDYIREVLENHCRSVEMSETRTFMAGNICHLCTDFTALTGDGLESLLKALHPTPALGGFPRKEALACIREVEVHERKFYGGYLGPVGKDAARLYVNIRSMELFPGAFRLYVGGGINGDSVFEDEWEETSDKAATLLNVLGIHSVGDKADYK","1603991 1602855","TIGR ID: PG1525","isochorismate synthase","Cytoplasm","Residues 78-356 have 32% similarity to AE005040, Halobacterium sp. isochorismate synthase.Residues 62-356 have 31% similarity to AE006306, L. lactis subsp. lactis, isochorismate synthase.Residues 33-361 have 31% similarity to Z99120, B. subtilis isochorismate synthase. ","
InterPro
IPR004561
Family
Isochorismate synthase
PTHR11236:SF3\"[100-357]TIsochor_synth
TIGR00543\"[47-356]Tisochor_syn
InterPro
IPR005801
Domain
Anthranilate synthase component I and chorismate binding protein
PD000779\"[99-349]TAnth_synth_chor
PF00425\"[101-356]TChorismate_bind
noIPR
unintegrated
unintegrated
G3DSA:3.60.120.10\"[99-356]TG3DSA:3.60.120.10
PTHR11236\"[100-357]TPTHR11236
SSF56322\"[77-357]TSSF56322


","BeTs to 4 clades of COG1169COG name: Isochorismate synthaseFunctional Class: H,Po The phylogenetic pattern of COG1169 is -------cEBrh---------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 101-356 are 31% similar to a (SYNTHASE ANTHRANILATE BIOSYNTHESIS LYASE COMPONENT I) protein domain (PD000779) which is seen in DHBC_BACSU.","","Thu Jun 14 11:49:05 MDT 2001","","Thu Jun 14 11:49:05 MDT 2001","Thu Jun 14 11:49:05 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:49:05 MDT 2001","Thu Jun 14 11:49:05 MDT 2001","","","Wed Feb 21 13:38:42 MST 2001","Mon Jun 25 15:44:56 MDT 2001","Wed Feb 21 13:38:42 MST 2001","","Mon Jun 25 15:44:56 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 50-348 show 25% similarity to PG0913, a possible para-aminobenzoate synthetase component I.","Mon Jun 25 15:44:56 MDT 2001","Tue Jul 29 19:01:48 2008","-44% similar to PDB:2EUA Structure and Mechanism of MenF, the Menaquinone-Specific Isochorismate Synthase from Escherichia Coli (E_value = 4.0E_16);-41% similar to PDB:1QDL THE CRYSTAL STRUCTURE OF ANTHRANILATE SYNTHASE FROM SULFOLOBUS SOLFATARICUS (E_value = 3.5E_12);","","","Residues 101 to 356 (E-value = 2.5e-18) place PG1334 in the Chorismate_bind family which is described as chorismate binding enzyme (PF00425)","Mon Jun 25 15:44:56 MDT 2001","34541187","","","","","","1","","","PG1525" "PG1335","1605464","1604028","1437","ATGAGGGAAATAACGGATATTGCTGTAGCCGAATCTGGTGATAGTGACTTCAAAGAGCGGCTTGAGACTAAAAATGCTAAAAGCTGGCTGAAAAGTGTAAGCGCTTTTGCCAACGGAATAGGAGGAACGCTCTATTTCGGCGTGGAAGATCGCACGCGCCGGATAATTGGTGTACAGGATATTCAACTGACAATCAGCAAAATTACAGAGCTGATTGTGGCTCGTATCACCCCGCGTCCGGTTTTTGAGTGCATCCCCCTGCAACAGAAAGGAAAAGATATTCTGGCTGTCAGAGTGGATTCCGGAAAACATACTCCTTTCTACTATGTTCACGATCATCACCATACAGCATATATACGTATGGGAGACGAGTCTGTTCCGGCGACCGATTATCAGCTCAATGAGCTTATACTGAAAGGAAGAAACGAAACATATGACAGTCAAATAACGGAGAAACTGCGCACAGATTATAGTTTTACATTGTTGGAGGCGACATATTTGCATACCTTGAATCAGCATATGTCAGATAGCGACTATGTTTCTTTCGGTTTGGCGGTAGAAGATGGTCGTTTGACAAACGCCGGATTGCTTTTTGCCGACCAATGTCCGTTACCTGACAGCAGAGTCTTCTGTACACGCTGGAATGGGTTGCAAAGAGGATCAGTGCATGAAGATGCGACGGATGATGCAGAATACAGTGGCAATCTGATATACTTGTTAAAAAGTGCCACTGAGTTTATTCGCAGAAATACCCGCAAAGGATGGACTAAAACAGCTAATGGAAGAGTGGAGAAACCCGACTATGCCGAACGTGCTTATTTTGAGGGAGTGGTGAACGCTCTTATCCATAGGACATATGATTTTCGAGGGACTGAAGTTCATGTGGAAATGTATGACGACCGTTTAGTTATCTCATCTCCCGGGGGAATCTATGGAGGGGGAGAATTGGAGCCCATGAGCGACGGCTCTTATATTTCTAAAAGGCGTAATCCGATATTAGCTGACATTTTCAGCCGGCTAAGGTATATGGAGCGTCGGGGAAGCGGGATAAAGAAAATCTTTGAAGCAACGAAGAATCTTTATGGCTATACGGAAGAAAAAAAGCCGTTTTTCCTTGTGAATAAACAGAATGACTTCTTCCTGACGATTCCGAACGTTAATTATCGTTCTGAGTCTGTTACCACACATGACACCATACATGACACCATACATGACACCATACATGACACCATACATGATAAAATCGCCTTGTTACTTTCCTTCTGTCAAACGCCTCGCAGCAGAGAAGAGATGATGGAGTTTGTGGGTTTAAGAAACCGCGATCATTTTCAGAAGAAATACCTCCGTCCTTTATTAGAACAGGAAAAGATCGAAATGACCATTCCTGAAAAGCCCCAAAGTAAGAACCAGAAGTATCGAACGAAGGAGGTAGTCAAA","7.10","0.71","55190","MREITDIAVAESGDSDFKERLETKNAKSWLKSVSAFANGIGGTLYFGVEDRTRRIIGVQDIQLTISKITELIVARITPRPVFECIPLQQKGKDILAVRVDSGKHTPFYYVHDHHHTAYIRMGDESVPATDYQLNELILKGRNETYDSQITEKLRTDYSFTLLEATYLHTLNQHMSDSDYVSFGLAVEDGRLTNAGLLFADQCPLPDSRVFCTRWNGLQRGSVHEDATDDAEYSGNLIYLLKSATEFIRRNTRKGWTKTANGRVEKPDYAERAYFEGVVNALIHRTYDFRGTEVHVEMYDDRLVISSPGGIYGGGELEPMSDGSYISKRRNPILADIFSRLRYMERRGSGIKKIFEATKNLYGYTEEKKPFFLVNKQNDFFLTIPNVNYRSESVTTHDTIHDTIHDTIHDTIHDKIALLLSFCQTPRSREEMMEFVGLRNRDHFQKKYLRPLLEQEKIEMTIPEKPQSKNQKYRTKEVVK","1605464 1604028","TIGR ID: PG1526","hypothetical protein","Cytoplasm","Residues 9-393 show 40% similarity to AE002103, U. urealyticum conserved hypothetical protein.Residues 239-354 show40% similarity to AE002053,D. radiodurans ATP-dependent DNA helicase RecG-related protein.","
InterPro
IPR007421
Family
ATPase associated with various cellular activities, AAA-4
PF04326\"[36-131]TAAA_4
InterPro
IPR013838
Binding_site
Beta tubulin, autoregulation binding site
PS00228\"[1-4]?TUBULIN_B_AUTOREG
noIPR
unintegrated
unintegrated
PTHR12155\"[31-82]TPTHR12155
PTHR12155:SF5\"[31-82]TPTHR12155:SF5


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 239-352 are 35% similar to a (ATP-DEPENDENT DNA HELICASE RECG) protein domain (PD106643) which is seen in RECG_THIFE.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Feb 21 13:50:37 MST 2001","Wed Feb 21 13:50:37 MST 2001","Wed Feb 21 13:50:37 MST 2001","","Wed Feb 21 13:50:37 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 263-479 are 91% similar to PG1323, a putative RecG protein. Also weak similarity to PG1065, a conserved hypothetical protein.","Mon Jun 4 15:28:17 MDT 2001","Mon Jun 4 15:28:17 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 22 to 212 (E-value = 1.4e-08) place PG1335 in the AAA_div family which is described as Divergent AAA domain (PF04326)","Mon Jun 4 15:28:17 MDT 2001","34541188","","","","","","1","","","PG1526" "PG1336","1605926","1607248","1323","ATGATAATAGACAGAAATGAATACATTGCACAGTTATTCGCAAAGCGATGGAATGGTAAGGTGAAGATTGTTACGGGATTAAGACGTTCAGGAAAGTCATTCCTACTCTTCACTCTCTTTAAGAATCGATTGATTGAGGAAGGAGCTCAAAAAGAAGATTTCGTGGAGGTAGCTCTTGATAGAAAATCGGATATCAAGTATCGTAATCCCAATCTCCTATACGACTATATCATGGAGCAAACAAAAGATATGGGCAGGAAATACTATGTTTTGATTGATGAGATACAGCTATCATATAAGATTAAAAATGAACACATTGATGAATCATCGGTGCCTGAAGAGGACAGAGACATGCTTTACATCACGTTCTATGATATCTTGAATGATCTGATGGCACGCCCGAATCTAGATGTGTATGTGACCGGTTCAAATTCCAAGATGTTGTCGCATGATATCGTGACTAATTTTCGTGACCGTGGTTCTGAAATAAAAGTTTATCCGCTATCCTTTGCAGAATACTTGTCGGTGTCCCGGATGGAGAAAGCCGATGCTCTGGAGGAGTATCTAATGTACGGCGGTATGCCTTTGACGGTTCTTGAACCGGATGAAAAGGAAAAACGCAAGTACTTACAAGGGCTCTTCTCGAATGTCTATATCAAGGATATTGTGGAACGCTACAACCTGAAAGATGACAACATATTAAGTGCTTTGGTTGATGCTCTATCGTCATCGGTAGGCTCACTGACGAATCCAAATAAACTTGCCAATACGGCAGGTTCTCTGATGGGGAAGTTACCTTCACACAATACTATTAAGAACTATCTGGACTATTTGGAGGAGGCATTCCTTTTCCATAGCGCAAGACGATGGGATGTGAAAGGGCGTAAATATTTCGACAAGATTCTGAAGTATTACGCCATGGATTTAGGCTTAAGGAATGCCAGATTGAATTTTCGACAACAAGAGCGTTCGCATCTGATGGAGAATATGATTTACAATGATTTGATTCGCAGAGGATACTCTGTGGATGTGGGCATTGTAGAGTTGACTCGTGTAATAGACGGTAAGCGTAAGTTGTCGCAATACGAGATTGATTTTGTGGTTAACGCAGGTAATAATAAGGTGTATATTCAGTCGGCATTGAATGTGGATACTCCTGAGAAGAAGGCACAGGAGACTTTCTCTCTGAGAAACACCGGCGACTTTTTTCGTAAGATTGTCGTGTTGGACGGTAGCCGCAAACTTTGGTCGGACGAGGATGGCGTAATGTATGTGGGTGTGATACCATTCTTATTAGAAGATGTTGTGGCGGAGGTAATTGGA","6.40","-1.75","51224","MIIDRNEYIAQLFAKRWNGKVKIVTGLRRSGKSFLLFTLFKNRLIEEGAQKEDFVEVALDRKSDIKYRNPNLLYDYIMEQTKDMGRKYYVLIDEIQLSYKIKNEHIDESSVPEEDRDMLYITFYDILNDLMARPNLDVYVTGSNSKMLSHDIVTNFRDRGSEIKVYPLSFAEYLSVSRMEKADALEEYLMYGGMPLTVLEPDEKEKRKYLQGLFSNVYIKDIVERYNLKDDNILSALVDALSSSVGSLTNPNKLANTAGSLMGKLPSHNTIKNYLDYLEEAFLFHSARRWDVKGRKYFDKILKYYAMDLGLRNARLNFRQQERSHLMENMIYNDLIRRGYSVDVGIVELTRVIDGKRKLSQYEIDFVVNAGNNKVYIQSALNVDTPEKKAQETFSLRNTGDFFRKIVVLDGSRKLWSDEDGVMYVGVIPFLLEDVVAEVIG","1605926 1607248","TIGR ID: PG1528","conserved hypothetical protein","Cytoplasm","Residues 2-433 showed 30% similarity to U32784, H. influenzae conserved hypothetical protein.","No hits reported.","BeTs to 3 clades of COG1373COG name: Uncharacterized ATPases of the AAA superfamilyFunctional Class: RThe phylogenetic pattern of COG1373 is -M-K--V---Rh---------Number of proteins in this genome belonging to this COG is 3","No significant hit to the Blocks database.","Residues 221-383 are 34% similar to a (PROTEIN 439AA LONG MJ1544 HI1038) protein domain (PD138758) which is seen in YA38_HAEIN.Residues 23-217 are 29% similar to a (PROTEIN LONG 453AA MJ1637) protein domain (PD010070) which is seen in YA38_HAEIN.Residues 94-214 are 34% similar to a (PROTEIN ORF PUTATIVE KINASE) protein domain (PD000146) which is seen in Q58939_METJA.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Feb 21 13:59:08 MST 2001","Wed Feb 21 13:59:08 MST 2001","Wed Feb 21 13:59:08 MST 2001","","Wed Feb 21 13:59:08 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Feb 21 13:59:08 MST 2001","34541190","","","","","","1","","","PG1528" "PG1337","1607378","1609513","2136","ATGGATATAGATAATATAGATCGGCTTTTCCAAGAATACGGATATGATATAAAAGAAAGTACCGCATCATATAGAGTATACTTGTTGAACCAAGGAATGTATCATGGTGCAGAAATCCAAATAATGAATGATAATACCGAGGAGACTCAGATATTTGAGCGCTACTCTAAATTGGGTTATCATGCAAAAAAACAAAGGTTCAGATCTATCGAAGAAGCAGAGAGTTATTTGTTTAAAGGTTTTTTTAACACACAAACCACTGCAAATGACATTAATAGGAGATACACAGAATTTGCCACTAATCAAGTAAAGCATTATTGCGGCAGTGACATTAAGTACCAGTACATCAGTATGCCTTACTCTATTTACAAAGAAGATGCAGAAGATGCTATAAATGGGACTTCTGATATCATTTCTGTAATCAAAGAAACAATCAATAGAAAAGGTGCACATCTTGTTGTTGTAGAAGCAGCAGCTGGATTTGGTAAGACATGTACTGCATATGAGATATATAAATCTTTTTTAGATAGTAGCGAATATCACAAACCTATTTTTACTGAATTATCAAGAAACAGAGATGCCAAGCAGTTTAAATATATTCTTTGGTCTGAGATTGATAAGGAAAAAGATACAACAGCCAAACAGGAACTGGTTGTTTATAATATTAAAAAAGGAAGAATTCCTCTTATTATAGACGGTTTTGATGAATTGTTATCCAAAAATATAGATCCTGGAAAAACAGGGCAGTTAAATGAATTTGAACAGGTTGAAACAATGCTTTCTACTATAGGAGATTTATTAACAGATGAAGCAAAGATTATTCTTACTTCCAGAAAAACGGCAATCTTTGCAGGGACTGAATTTGGGGATTGGGTTGATTCTTATAATGGAAATTTTGATGTAATTAGGTTTCAATTGGAGAAGCCAAATATCAAACAGTGGCTTTCTACTGAACGCTACGAGGAAATTATTGGCAAAAATATTCCCTTGGAAAGCATCTCAAATCCTGTTCTATTAACTTATTTACGTAATATAGATCAAAATAATTTTAGTGATTTGTTGATTTATCCAGAGACGATTACAGATAAGTATTTCGAATATCTATTGAACCGGGAGAAGGAAAGACAAAATCTTATTATTCGTTGGGAAGATCAGATGCAAATATTTGAGAATCTAGCTAGATCTTTTGTAGAGTTTGACATTACAGGAGAGAATAGGAGTTTTGTCAAAGAACTGATCATTGAATACAATAAATCTCGTCTTCTGGATTATAAAGAGTTGATGCCAACAAAACAGACTTTGGAGGAGCTTGCAGACACTCTTACAAATCATGCCCTCTTAGATCGAGCAGGGAATAAGGATTTTATCTCTTTTATCAATGAGTTTATTTTTGGCTATTTGCTCGGAAAATCAATACAAAAAGAGCCGGTTGCATTTTTGCAAAAACTAGCTCCTTTACCTAACAATCTGATCGAATTAGCTGTTTGCTCATACAAATATTCTTCTAAAAAAGATAAATTAGAATTATGGAATAAACTTTCAGTAATAAAAGATAAAATGTCATTTTATTTGGCTGTCATTACAGATTGTGTTCTCATAGGAAAGATAATGGGTACTTATGAATGCAAAGGTCTAAATTCCTTTCATTTTGAAGATCTTAAAATCTTCAGTGAAGAGTGTAAGTTTACAGAAACTTCATTTGTAGATTCAGTATTCGAAAGGTGCACCTTTGATGTAAATGCATTTCATAATGTTACATTTACAGGATGTAAATTTATTGACTGTAATATGAGAGACAATTTGAGTTCTTGTTCTCACAATATCCATTTTTATGGATGCGATGACTACAACAATGGCTTTATCTCTTCTTTAAAGGTTATGCCAACTTTTGATTTACAAAAACAAGAAGATATAGATTTGGAAATCGAGATACTTGGAAAATTCTTCAAAGTGGATGGAAAATCTCCAAAAATGAAGTATATTTCTGCTCTTAGAAAAGAATTTGAAGGACAAGATTTGGATGTTGTATTTGCCACTTTCGAAATTTTAAAGAAAAAGGGTATGATCCTGATAGATGGAAACAACTCACATATTTCAAAATCAGGCATCAGTTATTATCATAAGAATATACAAATA","5.10","-18.54","82758","MDIDNIDRLFQEYGYDIKESTASYRVYLLNQGMYHGAEIQIMNDNTEETQIFERYSKLGYHAKKQRFRSIEEAESYLFKGFFNTQTTANDINRRYTEFATNQVKHYCGSDIKYQYISMPYSIYKEDAEDAINGTSDIISVIKETINRKGAHLVVVEAAAGFGKTCTAYEIYKSFLDSSEYHKPIFTELSRNRDAKQFKYILWSEIDKEKDTTAKQELVVYNIKKGRIPLIIDGFDELLSKNIDPGKTGQLNEFEQVETMLSTIGDLLTDEAKIILTSRKTAIFAGTEFGDWVDSYNGNFDVIRFQLEKPNIKQWLSTERYEEIIGKNIPLESISNPVLLTYLRNIDQNNFSDLLIYPETITDKYFEYLLNREKERQNLIIRWEDQMQIFENLARSFVEFDITGENRSFVKELIIEYNKSRLLDYKELMPTKQTLEELADTLTNHALLDRAGNKDFISFINEFIFGYLLGKSIQKEPVAFLQKLAPLPNNLIELAVCSYKYSSKKDKLELWNKLSVIKDKMSFYLAVITDCVLIGKIMGTYECKGLNSFHFEDLKIFSEECKFTETSFVDSVFERCTFDVNAFHNVTFTGCKFIDCNMRDNLSSCSHNIHFYGCDDYNNGFISSLKVMPTFDLQKQEDIDLEIEILGKFFKVDGKSPKMKYISALRKEFEGQDLDVVFATFEILKKKGMILIDGNNSHISKSGISYYHKNIQI","1607378 1609513","TIGR ID: PG1529","hypothetical protein","Cytoplasm","This sequence corresponds to gi:34397507 in Genbank.","
noIPR
unintegrated
unintegrated
SSF52540\"[108-281]TSSF52540


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","Tue Mar 8 11:14:22 2005","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P.gingivalis.","Tue Mar 8 11:14:22 2005","Tue Mar 8 11:14:22 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541191","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Tue Mar 8 11:14:22 2005","","1","","","PG1529" "PG1338","1609513","1610400","888","ATGAGCGCAGGAAATAAAGTTTTGAAAGATATCGCAACAAACTTAGAGCATGTTTTAAACAAATGTGGTGTTATGTATCATGTGTTTCATCGGACCAAGTCTGTAATGTCTATTAAAAATAAACTTGAAAGAAAAGCCAATGAATATCGCGAGAAAAATAAGAAGATGCAGGATCTATTAGCTCTTCGTATTACATTGTATTTTACAGATGATGTCGAACTTATTCACAACTATTTAAAAAGTCAACCAAATTTTGATAGTGAATCTGTTGATGAAGCTGAGGTTGACAAATTTTGTCCCAAAAGACTAAACTTAGTGATGCGTGTTCCCGACATCCTCAAACAAGATATGAAAGCCGCTATAGAAGAAACACATTATAAAGATTTAATTGATGACACCTATGAAATTCAAATTAGAACTATTTTATCAGAAGGATGGCACGAAGTTGAACATGATTTGCGTTATAAATGTAAAGAAGAATGGGACGAGTTCAAAGAAGAGTCCAGGCTTTTGAATGGAGTTTATGCTACCTTGGAAAACAGTGAATGGTCAATGCTTACTTTATTTGACAGACTTTCATATGCTCAGTATAAAAATAAAGCATGGAATAGCATGCTGCGCAACAAAATGAGAGTACGTTTTGTTGACAAGGGATTGTCAAAAGAACTCTGTGAATATTTATCTGATAATCGTAATACTGCAAAGCTATTGTTTCGTGCAAATAGAGGATTAATATTAAAATTAGTGATGGAAAAAGGTTTTGCCTACCCACTTACTTATGATACCGTAGTTCATCTAATCAATCATATTGTCATGAAAGACAAAAATTTAGCAAATTTTGAAGATGACATTTTAAAAAAAGACATGGAATTACTGTTTGGCGAATTA","7.00","0.00","35065","MSAGNKVLKDIATNLEHVLNKCGVMYHVFHRTKSVMSIKNKLERKANEYREKNKKMQDLLALRITLYFTDDVELIHNYLKSQPNFDSESVDEAEVDKFCPKRLNLVMRVPDILKQDMKAAIEETHYKDLIDDTYEIQIRTILSEGWHEVEHDLRYKCKEEWDEFKEESRLLNGVYATLENSEWSMLTLFDRLSYAQYKNKAWNSMLRNKMRVRFVDKGLSKELCEYLSDNRNTAKLLFRANRGLILKLVMEKGFAYPLTYDTVVHLINHIVMKDKNLANFEDDILKKDMELLFGEL","1609513 1610400","TIGR ID: PG1530","hypothetical protein","Cytoplasm","Residues 14-159 show 30% similarity to AE002006, D. radiodurans conserved hypothetical protein.","
InterPro
IPR007685
Domain
RelA/SpoT
PF04607\"[30-159]TRelA_SpoT
noIPR
unintegrated
unintegrated
SSF81301\"[5-183]TSSF81301


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Feb 21 14:04:32 MST 2001","Wed Feb 21 14:04:32 MST 2001","Wed Feb 21 14:04:32 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","Residues 30 to 160 (E-value = 1e-06) place PG1338 in the RelA_SpoT family which is described as Region found in RelA / SpoT proteins (PF04607)","Wed Feb 21 14:04:32 MST 2001","34541192","","","","","","1","","","PG1530" "PG1338.1","1610543","1610857","315","TTGGGTAAAGACGGAGCATTCGCTCCTTTACTGGAAAGTATCTTAACTGATGCACTTGAAGGTGAAATGGACGCTCATCTGACTTCTGAGGAGCGTGAAAATGGCAATTGTCGTAACGGAAAGATGTACAAGCAGGTTCAGACACCCCTCGGTGAAGTAACCGTTTCAACACCAAGAGACCGTAATGCAAATTTCGATCCTCAGTTTATTAAGAAGCGTGAAACTATCCTTGCAGAAGGCGTTGCAGACCGTATTATTGGCTTATATGCTCTTGGTAACAACACAGTGAAATCAGTAACTGGATGGAAGAGAACT","","","11562","LGKDGAFAPLLESILTDALEGEMDAHLTSEERENGNCRNGKMYKQVQTPLGEVTVSTPRDRNANFDPQFIKKRETILAEGVADRIIGLYALGNNTVKSVTGWKRT","","TIGR ID: PG1531","possible transposase","Cytoplasm","Residues 2-101 show 37% similarity to X63715, S. meliloti transposase.Residues 2-95 show 37% similarity to H70582, M. tuberculosis probable transposase for IS1554.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Fri Jun 15 11:29:55 MDT 2001","Wed Feb 21 14:11:01 MST 2001","Wed Feb 21 14:11:01 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Jun 15 11:29:55 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Fri Jun 15 11:29:55 MDT 2001","","","","","","","1","","","PG1531" "PG1339","1610996","1611310","315","ATGAACGAGGCTGTGCAGTTAGTTACTCGTGCCATTTATAATGTTCTTGGCATTGATAAGGAAGGCCACAAGGACGCGTTCTTGGTATGTATATACAGAAGTGAAGGAGCTAACTTTTGGCTGAGTATCCTTACAGACCTTCAAAACCGTGGTGTTGAAGATATCCTTATTGCCTGTGTAGACGGTTTGAAAGGCTTCCCTGAAGCCATACAGAGCGTTTATCCTGATACTGTTTTCAACTTTGCATCGTACATCAAATCAGAAATTCCATCAAATACGTCGGTTCTAAGAACCGGAAAAAGTTCCTCAAGGATC","5.10","-1.87","11613","MNEAVQLVTRAIYNVLGIDKEGHKDAFLVCIYRSEGANFWLSILTDLQNRGVEDILIACVDGLKGFPEAIQSVYPDTVFNFASYIKSEIPSNTSVLRTGKSSSRI","1610996 1611310","NO TIGR ID corresponds to this gene.","transposase","Cytoplasm","Numerous significant hits to transposase proteins in gapped BLAST; e.g. residues 7-77 are 57% similar to gb|AAC82722.1| transposase of Yersinia pestis, residues 6-76 are 52% similar to dbj|BAB35644.1| putative transposase of Escherichia coli O157:H7, residues 10-77 are 55% similar to gb|AAD03556.1| transposase of Burkholderia cepacia. ","
InterPro
IPR001207
Family
Transposase, mutator type
PF00872\"[10-77]TTransposase_mut


","No hit to the COGs database.","***** IPB001207 (Transposases, mutator family) with a combined E-value of 1.5e-13. IPB001207B 11-40 IPB001207C 50-89","Residues 50-77 are 82% similar to a (TRANSPOSASE PROTEIN DNA-BINDING INSERTION SEQUENCE FOR) protein domain (PD001623) which is seen in O68779_YERPE.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Feb 21 14:17:19 MST 2001","Mon Mar 26 09:00:54 MST 2001","Wed Feb 21 14:17:19 MST 2001","Wed Feb 21 14:17:19 MST 2001","Wed Feb 21 14:17:19 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Mar 26 09:00:54 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Mar 26 09:00:54 MST 2001","","","","","","","1","","","" "PG1340","1613854","1611809","2046","ATGAATCATATCAAGGAACAAATACTGGAAAGAACGGATGGAGGGTTGCTTGTATTCAACTACTATATGCCTTTTCCTTTCAAGCCGAAGAAGAAATTTCAAAACCCGCTCTACGAAGACAAACGAGCTTCCTGTTATATCTATAAGGTGGCAAAAACGGGAGTTTACCGGATGAATGATTTTGGCGATCCCAATTATTCGGGAGATTGTTTTTGGTTTGTCGCCGCCATGTATGGCATGGACGTACAAAAAGATTTTGTACATATCCTGAAGAAAATTGTCCGTGACCTTTCTCTTCCGATAGCTATACCTGCACACTCGAAAGAGTCTTTTCCGACACGAAACAGAAAACTCCCATATCTCGAACAAACTTTATCAGAACCGAAAGATGCATCCATGAGACCTTATAAAATCACAGAAAAACCTTACACCCGAAGCGAGCTTTCTTTCTGGGAACAATATGGTACCGGACAAAATATTTTGGATCGATATCATGTCAAATCTCTGCAAACTTTCCAAAGCGAAAATGCCGAAGGAAAAAGCTACTGTTTTACGAATACCTCAAAAGAGCCGATCTTCGGCTTCCTGCGCAAAGACTATGTAAAGATATATCGTCCTTTCAGTCAATGCCGGTTCGTTTACGGGGGAATATTGCCGGAAACCTATGTGTTCGGGATGGAGCAACTTCCGCAAAGAGGAGATATACTTTTCATCACGGGAGGAGAGAAAGATGTATTATCCCTTGCCTCTCATGGATTCCATGCCATCTGTTTCAACAGTGAGACAGGCAATATCGAAGAATCCGTCATCGAAATGCTTGCACGAAGGTTCAGGCATATTTTCTTTTTGTACGATATGGACGAAACGGGCATAAAAGCCTCTACACGCTGGTGCGAACGTTTTTCTCACCATAAATTACAGCGGATCGAATTGCCTTTATCCGGGAACAAACAAGAGAAAGATATCTCCGATTACTTCAAGCTGGGAAACAGCACAGAAGATTTCAGGAAGCTGATATCCGACCATTTGGAACAATTATATACACAAACCATTATGCTTTTAAGTTCGTGTGAAATCAATTATAACAATCCGCCCGATCGTTCCAAAACGGTTATTTCCGTGAACGACGTTCCTTTGGGAACCTACGACAATCTGTTCTGCATTACGGGTGGTGAGGGAACGGGCAAGAGCAACTATATCGCGGCGATTATTTCCGGAGTGTTGCATACTGAAAAGAGGGATTTCCCGATAGATCTGCTCGGACTGGATGTTTGTCCGAATATGCGGAGCAAAGCGGTTCTGCACTACGATACGGAACAGTCGGAATATCAACTTCATAAAAACATCGGAAAAACACTCCGAAGAGCCTCTCTTACGTCTGTTCCTGATTTCTATCATCCCATATTTCTTGCAGCTCTTTCACGTAAAGAGAGATTGCAGTTGATAAAAGACAGCATCGATTTGTATCATCACCGGTATGGAGGAATTCATCTGGTCGTCATAGATGGAATAGCCGACTTGATCCGTTCGGCCAATGATGAAAGCGAGAGTATTGCCATTGTGGACGAACTCTACCGGCTTGCCGGTATCTATAATACCTGTATTATCTGTGTACTCCATTTTGTCCCGAACGGGATTAAACTGCGTGGGCATATCGGTTCGGAACTTCAGCGCAAGTCGGCGGCCATCCTCTCCATAGAGAAAGATGAGAATCCGGCTTTGTCGGTCGTAAAAGCACTTAAAGTAAGGGATGGAAGCCCGTTGGATGTACCTTTGATGCTGTTCGGATGGGACAGGGAAAAGGAAATGCACGTTTACCGGGGAGAGAAATCTCCGGAAGACAAAGAAAAACGGAAACTTACGGAATTGGGACAAATCGCAAAAGAAGTCTTTCACGCCCAAGAGCATTTATCTTACAACGAACTGGTCGAAAGAATCATGCAAACGGTCGACGTCAAAGACCGTACGGCCAAGAGTTATATCAGTTATATGCGAAACAATGGAATTATTGAACAACAAACGAATAATCTTTACAACCTGAAACTA","7.70","5.84","78661","MNHIKEQILERTDGGLLVFNYYMPFPFKPKKKFQNPLYEDKRASCYIYKVAKTGVYRMNDFGDPNYSGDCFWFVAAMYGMDVQKDFVHILKKIVRDLSLPIAIPAHSKESFPTRNRKLPYLEQTLSEPKDASMRPYKITEKPYTRSELSFWEQYGTGQNILDRYHVKSLQTFQSENAEGKSYCFTNTSKEPIFGFLRKDYVKIYRPFSQCRFVYGGILPETYVFGMEQLPQRGDILFITGGEKDVLSLASHGFHAICFNSETGNIEESVIEMLARRFRHIFFLYDMDETGIKASTRWCERFSHHKLQRIELPLSGNKQEKDISDYFKLGNSTEDFRKLISDHLEQLYTQTIMLLSSCEINYNNPPDRSKTVISVNDVPLGTYDNLFCITGGEGTGKSNYIAAIISGVLHTEKRDFPIDLLGLDVCPNMRSKAVLHYDTEQSEYQLHKNIGKTLRRASLTSVPDFYHPIFLAALSRKERLQLIKDSIDLYHHRYGGIHLVVIDGIADLIRSANDESESIAIVDELYRLAGIYNTCIICVLHFVPNGIKLRGHIGSELQRKSAAILSIEKDENPALSVVKALKVRDGSPLDVPLMLFGWDREKEMHVYRGEKSPEDKEKRKLTELGQIAKEVFHAQEHLSYNELVERIMQTVDVKDRTAKSYISYMRNNGIIEQQTNNLYNLKL","1613854 1611809","TIGR ID: PG1533","conserved hypothetical protein","Cytoplasm","Residues 349-678 have 27% similarity with B.fragilis unknown protein.This sequence is similar to BT2333.","
InterPro
IPR006154
Domain
Toprim subdomain
SM00493\"[234-306]TTOPRIM
noIPR
unintegrated
unintegrated
SSF46785\"[614-676]TSSF46785
SSF52540\"[359-587]TSSF52540
SSF56731\"[134-339]TSSF56731


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Dec 10 17:22:25 2003","Wed Dec 10 17:22:25 2003","Wed Feb 21 16:07:11 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 299-678 have 66% similarity to PG0762, a hypothetical protein. Also weak similarity to PG0754, a hypothetical protein.","Mon Jun 4 15:30:32 MDT 2001","Mon Mar 19 09:33:19 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Mar 19 09:33:19 MST 2001","34541194","","","Wang,J., Shoemaker,N.B., Wang,G.R. and Salyers,A.A. 2000. Characterization of a Bacteroides mobilizable transposon, NBU2,which carries a functional lincomycin resistance gene. J. Bacteriol. 182 (12): 3559-3571. PubMed: 10852890.","","Mon Mar 19 09:33:19 MST 2001","1","","","PG1533" "PG1341","1614240","1613854","387","ATGATGGAAAGCGATGAAATAAAAAGCATTCAAGAAAACCTCAAAGATATTCAGGGGGTGTTATCGGAGATACATGGTTTTATGAGAGACCTGAAAAAAGATTACAGCCCGGTGGATGAAAGCATCAGTCTGGATTCGAGTATGCTCGCCATGCTTTTGAATGTCTCTCCTACTACTGTTTACCGATGGAGAGCAAGGAATGAGTTGCCCTACACGATTCTGAGCAGCGGAGCATGTGCCTATCGATTCGACGAAGTGTACGTGGCCGTCAAATGTGGCCGGTTAAGAGCCCGCGGATTCAATCGGATAGAGGCATTAAGGACTTTATCCGTCTATCGGGACGGTATCATCAGAGGGTGTGGTTTTGAAGCAAAGGAAAAAGACGCA","7.10","0.09","14676","MMESDEIKSIQENLKDIQGVLSEIHGFMRDLKKDYSPVDESISLDSSMLAMLLNVSPTTVYRWRARNELPYTILSSGACAYRFDEVYVAVKCGRLRARGFNRIEALRTLSVYRDGIIRGCGFEAKEKDA","1614240 1613854","TIGR ID: PG1534","hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR009061
Domain
Putative DNA binding
SSF46955\"[42-100]TPutativ_DNA_bind


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541195","","","","","","1","","","PG1534" "PG1342","1614584","1614246","339","ATGCAGAACGTAGGATTAAGACTCAAACAGGAGCGGAACAGAAAAGGCTATTCCTTACAGTATGTTGCTGCTTCACTGAATGTTAGTACCACTACAGTCTATCGGATCGAAGCCGGAAATAAATATTTAAGTATGGAGCTTTTCGACCGGTACTGTGAACTTTTGGAACTGAATCCCAGAGACGTGTTTTCGAATCCTGCAATGGAAGAACGAGACCGGATTGCTCTTGAGATCGGCCGAAGGTTTATAGAGATAATGGAGTTGGGGGTAACAATTATCCTGCCCAAGATTATGAATATCAATATCCGACCCGGGCCTCCGGACAGTAAAATGAAACAA","9.90","2.95","13105","MQNVGLRLKQERNRKGYSLQYVAASLNVSTTTVYRIEAGNKYLSMELFDRYCELLELNPRDVFSNPAMEERDRIALEIGRRFIEIMELGVTIILPKIMNINIRPGPPDSKMKQ","1614584 1614246","TIGR ID: PG1535","hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR001387
Domain
Helix-turn-helix type 3
PF01381\"[8-62]THTH_3
SM00530\"[7-62]THTH_XRE
PS50943\"[8-62]THTH_CROC1
InterPro
IPR010982
Domain
Lambda repressor-like, DNA-binding
SSF47413\"[4-66]TLambda_like_DNA
noIPR
unintegrated
unintegrated
G3DSA:1.10.260.40\"[4-70]TG3DSA:1.10.260.40


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Feb 21 16:10:08 MST 2001","","Wed Feb 21 16:10:08 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","Residues 8 to 62 (E-value = 1.8e-09) place PG1342 in the HTH_3 family which is described as Helix-turn-helix (PF01381)","Wed Feb 21 16:10:08 MST 2001","34541196","","","","","","1","","","PG1535" "PG1342.1","1615878","1616156","279","GTGTGTAAACCCATAATGGACTTTAGAGAAATCTCTGTAATTTTAATCTCGAAATTAACACTCTCCGAGTGTCAACTCTTTTCAGTACACGTCACTCCAAAATTTTCCTATTGTACGCTCCGAAAAACGTGGTTCGAGAAAATTTTCATTTTGGTTCGGGAAGTAAAAAATTCCCAAACCAAAACGAAAAAATTCCGGTTCCAGTTTTTTCAAAAACACAAACCAAAATTTCGAGAATTACGGTTCGTAAAATACGATCCGGCAAATGAGATGAAACAG","","","11338","VCKPIMDFREISVILISKLTLSECQLFSVHVTPKFSYCTLRKTWFEKIFILVREVKNSQTKTKKFRFQFFQKHKPKFRELRFVKYDPANEMKQ","","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No significant hits with an E vlaue less than e-04 in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Thu Feb 22 10:56:04 MST 2001","Mon Jun 4 16:01:11 MDT 2001","Thu Feb 22 10:56:04 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 26-76 have 49% similarity to PG1849.1, a hypothetical protein. Residues 31-77 have 51% similarity to PG1772.1, a hypothetical protein. ","Mon Jun 4 16:01:11 MDT 2001","Mon Jun 4 16:01:11 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jun 4 16:01:11 MDT 2001","","","","","","","1","","","" "PG1343","1616505","1617389","885","ATGTCACAAAAGAACAAGAAGCGGTCTTCTGCCTTTTTCCATTCAAGGTTTTTGGCCATTATGAGTATTGCCGTTGTCCTCTTCCTTCTGGGGACTATCGGCATCATTGAGTTTGTCGGCAGAGGAATAGGCAATTCCGTGAGAGAAGACCTCTCCTTCAATCTGCTCTTATCCTCCGACATGGATGAAACGCAGGCACAAGAGCTACAGCGACAGATAGCGGCCACACCCTTCGTCAAAGATGTCAGCTATATCTCTGCCGATCAAGCCCTCGAAGAGATGAAAAAAGAATTGGGCGAAGACGATCCGGCCAAGATGCTCGGCTATAATCCCCTGCAAGCGGAAATGTGCGTTCACCTCAAAGCCCAATACACCCATCCGGACAGTCTGAAAACCATAGACTCTGCCATCCGCACATGGAATGGAGTGGACAATCTGGAATACAGGGCGGATATGTTCGACATAGTACACCGCAATACACGCCGTATCGGTCTCGTTCTGCTCGCTCTATCAGCCTTGCTCCTTCTGATCAGCTACATACAGATCAACAACACCACCCGTTTGTTGATCTATTCGAAGCGATTCAGCATCCGTACCATGACGCTGGTGGGTGCCACGCCTCGCTTTATCCGTAAGCCTTTCGTTCGCTACAGTATGCTCAATGGACTCGTGGCAGCTTTGCTCGCCATACTACTCCTCGGTATAGCCCTCTATGCAACTGATGAATACGCATTCAACAGGAGTTTACGCCCCTTCTTAACGATGGAAAACCTCCTGACCATAGCCGAAGGCATGTTACTTGTAGGTATACTGATCTCTGCCTTTTCGGCACGTGCTGCAACGAACAAATATATCCGCATGGATGGAGGCAAAATGCACCTCGTA","10.20","7.16","33121","MSQKNKKRSSAFFHSRFLAIMSIAVVLFLLGTIGIIEFVGRGIGNSVREDLSFNLLLSSDMDETQAQELQRQIAATPFVKDVSYISADQALEEMKKELGEDDPAKMLGYNPLQAEMCVHLKAQYTHPDSLKTIDSAIRTWNGVDNLEYRADMFDIVHRNTRRIGLVLLALSALLLLISYIQINNTTRLLIYSKRFSIRTMTLVGATPRFIRKPFVRYSMLNGLVAALLAILLLGIALYATDEYAFNRSLRPFLTMENLLTIAEGMLLVGILISAFSARAATNKYIRMDGGKMHLV","1616505 1617389","Possible MSD domain protein.TIGR ID: PG1536","cell-division protein ftsX","Inner membrane, Cytoplasm","Residues 2-219 have 29% similarity to AF169967, F. johnsoniae ftsX.Residues 17-214 have 25% similarity to AP001519, B. halodurans ftsX.Residues 17-215 have 27% similarity to AE005569, E. coli ftsX. ","
InterPro
IPR003838
Domain
Protein of unknown function DUF214, permase predicted
PF02687\"[120-285]TFtsX


","BeTs to 3 clades of COG2177COG name: Cell division protein FtsXFunctional Class: DThe phylogenetic pattern of COG2177 is --------ebrh---------Number of proteins in this genome belonging to this COG is 1","***** BP03665 (PROTEIN TRANSMEMBRANE CONSERVED MEMBRA) with a combined E-value of 1.6e-06. BP03665B 173-227","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Sat Jun 2 17:32:57 MDT 2001","Wed Feb 21 16:18:43 MST 2001","Wed Feb 21 16:18:43 MST 2001","Wed Feb 21 16:18:43 MST 2001","Wed Feb 21 16:18:43 MST 2001","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Mar 19 09:39:04 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 120 to 285 (E-value = 6.3e-17) place PG1343 in the FtsX family which is described as Predicted permease (PF02687)","Mon Mar 19 09:39:04 MST 2001","34541197","","","Kempf,M.J. and McBride,M.J. 2000. Transposon insertions in the Flavobacterium johnsoniae ftsX gene disrupt gliding motility and cell division. J. Bacteriol. 182 (6): 1671-1679. PubMed: 10692373. Pubmed: 10692373.","","Mon Mar 19 09:39:04 MST 2001","1","","","PG1536" "PG1344","1617367","1617663","297","ATGGAGGCAAAATGCACCTCGTATAAGGCAAGGAATATTGACAAACCAACTAAGACAATCAAACAGCATACTATGCTTTTCGGGAAAAAGAACTTTATCTTGATGGGGGTGTCCGCTATCCTCATCATTCTGGGCTTCATATTGATGTCAGGGGGAGGATCAGCCGACCAAGTAAGCTTCAATCCGGATATTTTCAGTGCCAAACGCATACAGATAGCACCGTGGGTGAGCATGGCCGGCTTCGTACTGATGGTATATGCCATCATGGTATCGCCGGATAAAAAAGACAATCGCAAG","10.70","8.17","10956","MEAKCTSYKARNIDKPTKTIKQHTMLFGKKNFILMGVSAILIILGFILMSGGGSADQVSFNPDIFSAKRIQIAPWVSMAGFVLMVYAIMVSPDKKDNRK","1617367 1617663 [Delay by 30 1719 53 0]","TIGR ID: PG1537","hypothetical protein","Inner membrane, Periplasm","Residues 12-88 have 38% similarity to AF169967, F. johnsoniae protein Fjo13.","
noIPR
unintegrated
unintegrated
signalp\"[1-55]?signal-peptide
tmhmm\"[31-51]?\"[70-90]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Feb 21 16:23:59 MST 2001","Wed Feb 21 16:23:59 MST 2001","Wed Feb 21 16:23:59 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Feb 21 16:23:59 MST 2001","34541198","","","","","","1","","","PG1537" "PG1345","1617774","1618613","840","ATGACCATTCTACAAGCCATCGTTTTAGCCATAGTCGAAGGGCTGACCGAGTTTCTTCCGGTTTCTTCCACCGGACACATGATTATCGCCGAAGGCATAATGGGGGTGGAAAGCACTTCTTTTGTCAGAGCCTTCACCGTGATGATACAGTTCGGTGCCATCCTATCCGTTCTGGTGCTGTACCGGAAACGTTTCTTTTGTTTTCCCGTGGCTCCACGAGCTTTAGGGCAAGGCAAAGGGAAAGAATTTATGAGTCGCTTCGATCTCTATTGGAAGCTATTGATAGCACTGGTTCCGGCCGTTATTTTGGGATTCCTGTTCGAAGATTGGGTAGATAGAATGCTGGGCAGCGTCTGGGTAGTGGCCGTCGTATTATTCCTCGGTGGTATTTTCATGCTGTTTGTCGATAAGCTCTTCGCCTCATCGGACAGAGGAGAAATCACATACCCCAAAGCGTTCGTTATAGGCTTGTTCCAATGTCTGGCCATATTCCTACCCGGACTCTCACGCTCCATGGCTACCATAGTCGGCGGTCAGCAACAAAAACTGAGTCGTAAGGCTGCTGCGGAGTTTTCCTTCTTTCTGGCTGTACCTACGATGCTCGGCGCCACCCTGCTAAAGGCCTATAAACTCTACAAGGAAGGCGGAATAGAAATTTTCAGAGAACACATGACCGTGCTCCTCGTGGGCAATATTGTGGCCTTCATCGTAGCACTGGCCGCGATCAAGTTCTTTATCGGATTCCTCACCCGATATGGCTTCAAGGCATTCGGCTATTATCGTATCTTGGTTGGCGGTCTGCTTATCGTATTGATGCTCTCAGGGGTATCCTTAGCTGTC","10.40","9.38","30838","MTILQAIVLAIVEGLTEFLPVSSTGHMIIAEGIMGVESTSFVRAFTVMIQFGAILSVLVLYRKRFFCFPVAPRALGQGKGKEFMSRFDLYWKLLIALVPAVILGFLFEDWVDRMLGSVWVVAVVLFLGGIFMLFVDKLFASSDRGEITYPKAFVIGLFQCLAIFLPGLSRSMATIVGGQQQKLSRKAAAEFSFFLAVPTMLGATLLKAYKLYKEGGIEIFREHMTVLLVGNIVAFIVALAAIKFFIGFLTRYGFKAFGYYRILVGGLLIVLMLSGVSLAV","1617774 1618613","TIGR ID: PG1538","undecaprenol kinase; bacitracin resistance protein","Inner membrane, Cytoplasm","Residues 1-261 had 54% similarity to AF169967, F. johnsoniae bacA.Residues 1-261 had 41% similarity to AE000777, A. aeolicus undecaprenol kinase.Residues 1-261 had 40% similarity to AE006448, L. lactis undecaprenol kinase.","
InterPro
IPR003824
Family
Bacitracin resistance protein BacA
PF02673\"[5-268]TBacA
TIGR00753\"[6-265]Tundec_kin_bacA


","BeTs to 8 clades of COG1968COG name: Uncharacterized ACR, bacitracin resistance protein BacAFunctional Class: SThe phylogenetic pattern of COG1968 is --T--qvcebr-----o----Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 93-261 are 43% similar to a (PROTEIN BACITRACIN RESISTANCE) protein domain (PD008412) which is seen in O67939_AQUAE.Residues 1-64 are 56% similar to a (PROTEIN BACITRACIN RESISTANCE) protein domain (PD008077) which is seen in O67939_AQUAE.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon Mar 19 09:54:52 MST 2001","Mon Mar 19 09:54:52 MST 2001","Wed Feb 21 16:49:30 MST 2001","","Wed Feb 21 16:49:30 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Mar 19 09:54:52 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 5 to 268 (E-value = 6.4e-107) place PG1345 in the BacA family which is described as Bacitracin resistance protein BacA (PF02673)","Wed May 9 17:43:45 MDT 2001","34541199","","","","","","1","","","PG1538" "PG1346","1618626","1619399","774","ATGAAACAAATAAATCGTCCGCTCCACCTGCGCGAGGGAGAAGTACTATACTTCGACAAACCTCTCACATGGACTTCGTTCGACTTGGTCAATAAATTCCGCTATCGGGCTTGTCGTCGGATGGGTATCAAGAAGTTGCGCGTAgGGCATGCCGGCACATTGGATCCATTGGCATCGGGCGTGATGATCCTGTGCACGGGACGTGCCACGAAGCAAATCGATGTGCTGCAGGCCGGCACGAAAGAGTACATTGCCGCCATCAGACTGGGTGCTACGACACCGAGTTTCGACAAGGAAACGGAACCGGATGCTTTCTTCCCGTACGAACATATCACGCGCCAATCGATCCTGGACATACTACCTCGATTCACGGGAACGATAGAACAGGTACCGCCCATATTCTCTGCTGTTCGCGTGAACGGGAAACGCGCATACGATTTGGCTCGAAAGGGGAAAGAGGTGGAGATGAAAACCCGTACGTTGCAGATCGACGAGATCGAACTACTGGAGTATGCCCTACCCCTCATCACGCTACGGATCGTATGCAGCAAAGGCACTTATATACGTGCTCTGGCTCGTGACATTGCCACAGCCCTCGAATCGGGAGGACATTTGGAGGCATTGCGCAGGACAAGAGTAGGCAATGCGCGTATCGAAGACTGCCTTTCGATGGATGAGTTGGAACAATGGTTCGACCGTCTTGGTTTTGCTTATGAACCGGAGTTCGAACAAAAAGAGGACAATCCGTCTTCCACACCTACAAATAAAAATAAC","8.50","3.79","29365","MKQINRPLHLREGEVLYFDKPLTWTSFDLVNKFRYRACRRMGIKKLRVGHAGTLDPLASGVMILCTGRATKQIDVLQAGTKEYIAAIRLGATTPSFDKETEPDAFFPYEHITRQSILDILPRFTGTIEQVPPIFSAVRVNGKRAYDLARKGKEVEMKTRTLQIDEIELLEYALPLITLRIVCSKGTYIRALARDIATALESGGHLEALRRTRVGNARIEDCLSMDELEQWFDRLGFAYEPEFEQKEDNPSSTPTNKNN","1618626 1619399","TIGR ID: PG1539","tRNA pseudouridine synthase B (tRNA pseudouridine 55 synthase) (PSI55 synthase) (pseudouridylate synthase) (uracil hydrolyase)","Cytoplasm","This sequence is similar to CT094.Numerous significant hits to tRNA pseudouridine synthase proteins in gapped BLAST; e.g. residues 7-229 are 47% similar to gb|AAD50463.1|AF169967_6 TruB of Flavobacterium johnsoniae, residues 15-229 are 45% similar to sp|O33335|TRUB_MYCTU possible tRNA pseudouridine synthase B (tRNA pseudouridine 55 synthase) (PSI55 synthase) (pseudouridylate synthase) (uracil hydrolyase) of Mycobacterium tuberculosis, residues 15-229 are 42% similar to emb|CAC30497.1| tRNA pseudouridine 55 synthase of Mycobacterium leprae.","
InterPro
IPR002501
Domain
tRNA pseudouridine synthase B, N-terminal-2
PF01509\"[39-188]TTruB_N
InterPro
IPR004510
Family
tRNA pseudouridine synthase B
PIRSF004489\"[15-257]TtRNA pseudouridine synthase B
InterPro
IPR014780
Domain
tRNA pseudouridine synthase B, N-terminal
TIGR00431\"[12-227]TTruB: tRNA pseudouridine synthase B
noIPR
unintegrated
unintegrated
PTHR13767\"[112-237]TTRNA-PSEUDOURIDINE SYNTHASE


","BeTs to 15 clades of COG0130COG name: Pseudouridine synthaseFunctional Class: JThe phylogenetic pattern of COG0130 is amtkYqvcebrh----olinxNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 186-227 are 59% similar to a (TRNA PSEUDOURIDINE SYNTHASE PROTEIN) protein domain (PD003504) which is seen in TRUB_MYCTU.Residues 15-185 are 42% similar to a (TRNA SYNTHASE PSEUDOURIDINE PROTEIN) protein domain (PD002765) which is seen in TRUB_MYCTU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon Mar 19 10:13:49 MST 2001","Mon Mar 19 10:13:49 MST 2001","Mon Mar 19 10:13:49 MST 2001","","Mon Mar 19 10:13:49 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Mar 19 10:13:49 MST 2001","-63% similar to PDB:1SGV STRUCTURE OF TRNA PSI55 PSEUDOURIDINE SYNTHASE (TRUB) (E_value = 1.4E_43);-50% similar to PDB:1K8W Crystal structure of the E. coli pseudouridine synthase TruB bound to a T stem-loop RNA (E_value = 7.0E_27);-50% similar to PDB:1R3F Crystal Structure of tRNA Pseudouridine Synthase TruB and Its RNA Complex: RNA-protein Recognition Through a Combination of Rigid Docking and Induced Fit (E_value = 1.6E_26);-50% similar to PDB:1ZL3 Coupling of active site motions and RNA binding (E_value = 2.7E_26);-52% similar to PDB:1R3E Crystal Structure of tRNA Pseudouridine Synthase TruB and Its RNA Complex: RNA-protein Recognition Through a Combination of Rigid Docking and Induced Fit (E_value = 4.7E_23);","","","Residues 36 to 188 (E-value = 1e-44) place PG1346 in the TruB_N family which is described as TruB family pseudouridylate synthase (N terminal domain) (PF01509)","Mon Mar 19 10:13:49 MST 2001","","","","","","","1","","","PG1539" "PG1347","1619420","1620469","1050","ATGAAATTATCCAAGTTCAAATTCAATCTTCCGGAGGAACTGATTGCATTAGAGCCGACCAAGTTCCGCGACGAATCGCGAATGATGGTCGTACATCGTCGTACAGGAGAAATCGAACATCGCGTTTTCAAGGACATTCTGGAGTATTTCGACAAGGGTGATACCTTCGTCTTCAACAATACCCGTGTTTTTCCTGCCCGTCTCTATGGTAATAAAGAGAAAACCGGTGCTCAGATCGAAGTTTTCCTCCTGCGTGAACTGAATGAACGACTGAAGCTGTGGGATGTCCTCGTGGATCCGGCCCGCAAAATACGCATAGGCAATAAGCTCTATTTCGGCAATGATGAAGAGCTGGTGGCAGAGGTGATAGACAATACTACCTCCAGAGGGCGTACGCTGCGCTTCCTGTACGATGGCTCTCATGACGAATTCAAGGAACTGCTTTTCCAATTGGGACAGACTCCTCTGCCGAAGTACATCGATCGGGACGTGAACAAAGAGGATCCGGAGAGGTATCAAAGCATATTTGCCAAAGTGGAAGGCGCCGTGGTGGCACCTGCTGCCAGTCTTCATTTCAGCCGCGAGCTGATGAAACGACTGGAGATCAAGGACTGCCATTTCTCTTACATAACGGTACACCACGCTTTGGGAGCTTATCGCGACATCGATGTAGAAGATCTGACAAAGCACAAAATGGATAGCGAGGAGATGTATATCACGGAGGAGTCGTGCATAAACATCAACCGTTCATGGGACGAAGAAAAGAAGATCTGCGCCGTAGGAACTTCGATTCTTCGTGCTTTGGAAACAGCTGTGAGCACAGACGGTCATCTCAAGCCGTTCGAAGGTTGGACCAATCGCTTCATCTTTCCTCCATACGAGTTCCATCTGCCTTCTGCTTTGGTTACGAACTTCCATATGCCGCTCTCTACCCTACTGATGATGACGGCCGCTTTCGGAGGACATGAACTGATTATGAGTGCATACGACCTCGCTGTAAAAGAAAAGTATCGTTTCGGTGCTTATGGTGATGCCATGCTCATCATCGAT","6.10","-6.21","40641","MKLSKFKFNLPEELIALEPTKFRDESRMMVVHRRTGEIEHRVFKDILEYFDKGDTFVFNNTRVFPARLYGNKEKTGAQIEVFLLRELNERLKLWDVLVDPARKIRIGNKLYFGNDEELVAEVIDNTTSRGRTLRFLYDGSHDEFKELLFQLGQTPLPKYIDRDVNKEDPERYQSIFAKVEGAVVAPAASLHFSRELMKRLEIKDCHFSYITVHHALGAYRDIDVEDLTKHKMDSEEMYITEESCININRSWDEEKKICAVGTSILRALETAVSTDGHLKPFEGWTNRFIFPPYEFHLPSALVTNFHMPLSTLLMMTAAFGGHELIMSAYDLAVKEKYRFGAYGDAMLIID","1619420 1620469","TIGR ID: PG1540","S-adenosylmethionine tRNA ribosyltransferase (queuosine biosynthesis protein)","Cytoplasm","Residues 1-349 have 44% similarity to AE001732, T. maritima S-adenosylmethionine tRNA ribosyltransferase.Residues 1-349 have 42% similarity to Z99118, B. subtilis S-adenosylmethionine tRNA ribosyltransferase.Residues 1-348 have 41% similarity to AE006388, L. lactis S-adenosylmethionine tRNA ribosyltransferase.This sequence is similar to BT3214.","
InterPro
IPR003699
Family
Queuosine biosynthesis protein
PF02547\"[1-224]TQueuosine_synth
noIPR
unintegrated
unintegrated
SSF111337\"[4-349]TSSF111337


","BeTs to 8 clades of COG0809COG name: S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase)Functional Class: JThe phylogenetic pattern of COG0809 is -----qvceb-huj--o---xNumber of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","Residues 1-222 are 42% similar to a (RIBOSYLTRANSFERASE-ISOMERASE S-ADENOSYLMETHIONINE:TRNA) protein domain (PD009740) which is seen in QUEA_BACSU.Residues 225-348 are 42% similar to a (RIBOSYLTRANSFERASE-ISOMERASE S-ADENOSYLMETHIONINE:TRNA) protein domain (PD011331) which is seen in QUEA_AQUAE.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon Mar 19 10:19:11 MST 2001","Mon Dec 22 10:04:51 2003","Wed Feb 21 17:07:31 MST 2001","","Wed Feb 21 17:07:31 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1-349 have 29% similarity to PG0867, S-adenosylmethionine:tRNA ribosyltransferase-isomerase.","Wed Feb 21 17:07:31 MST 2001","Mon Mar 19 10:19:11 MST 2001","-64% similar to PDB:1VKY Crystal structure of S-adenosylmethionine tRNA ribosyltransferase (TM0574) from Thermotoga maritima at 2.00 A resolution (E_value = 2.2E_77);-63% similar to PDB:1YY3 Structure of S-Adenosylmethionine:tRNA Ribosyltransferase-Isomerase (QueA) (E_value = 2.7E_75);-57% similar to PDB:1WDI Crystal Structure Of TT0907 From Thermus Thermophilus HB8 (E_value = 6.1E_59);","","","Residues 1 to 224 (E-value = 1.9e-69) place PG1347 in the Queuosine_synth family which is described as Queuosine biosynthesis protein (PF02547)","Mon Mar 19 10:19:11 MST 2001","34541200","","","","","","1","","","PG1540" "PG1348","1620469","1620915","447","TTGAGTATGGCCATAGTGTATCTTTCTTTGGGCAGCAACTTAGGCGATCGACACAGTTTGTTGTCTGCAGCATTGGAGATGCTACAAACGAGGGTGGGCAGACTGCTCACCCTTTCTCGGTTCTATGAAACCGAGCCGTGGGGATTCGAATCGCCCCATCCTTTCCTCAATGCGGTGGTGGCTTTGCGATCGGAACTCAAACCACAGGACATTCTGCACATCACACAAGCCATCGAAAGGGAATTGGGTCGTACACAAAAAAGCAATGGAGGGGTCTATCACGATCGTCCGATAGATATAGACATTCTATTGCATTCCGTATACCCGAAAGTACAGTCACCTGAGCTGGAACTGCCCCACCCACAAATGTGGCAACGGGATTTTGTGCGTATGCCGCTATCGGACGTAGCTCCTTGGCTGCATCCGGAGGCTCCGACTCCGAACCTC","6.40","-2.32","16950","LSMAIVYLSLGSNLGDRHSLLSAALEMLQTRVGRLLTLSRFYETEPWGFESPHPFLNAVVALRSELKPQDILHITQAIERELGRTQKSNGGVYHDRPIDIDILLHSVYPKVQSPELELPHPQMWQRDFVRMPLSDVAPWLHPEAPTPNL","1620469 1620915","The folK homolog of P. gingivalis is located upstream from the prtC gene. 3' end of this sequence are overlapped with the 5' region of the registered prtC sequence (accession number: AB006973)TIGR ID: PG1541","7,8-dihydro-6-hydroxymethylpterin pyrophosphokinase (2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase) (6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase)","Cytoplasm","PG1348 was previously sequenced and submitted as BAA31956 by Nakayama,K. and Shi,Y.Numerous significant hits in gapped BLAST; e.g. residues 5-144 are 39% similar to emb|CAB11855.1| 7,8-dihydro-6-hydroxymethylpterin pyrophosphokinase of Bacillus subtilis, residues 5-144 are 39% similar to pir||F37854 folate biosynthesis protein 2 (sul 3' region) of Bacillus subtilis, residues 3-142 are 39% similar to gb|AAC06507.1| folate biosynthesis 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase of Aquifex aeolicus.","
InterPro
IPR000550
Domain
7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK
PF01288\"[7-137]THPPK
TIGR01498\"[6-138]TfolK: 2-amino-4-hydroxy-6-hydroxymethyldihy
noIPR
unintegrated
unintegrated
G3DSA:3.30.70.560\"[4-141]Tno description
PTHR20941\"[41-142]TFOLATE SYNTHESIS PROTEINS
PTHR20941:SF2\"[41-142]T2-AMINO-4-HYDROXY-6-HYDROXYMETHYLDIHYDROPTERIDINE PYROPHOSPHOKINASE


","BeTs to 9 clades of COG0801COG name: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinaseFunctional Class: HThe phylogenetic pattern of COG0801 is ----yqvcebrhuj----in-Number of proteins in this genome belonging to this COG is 1","***** IPB000550 (7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase) with a combined E-value of 8.6e-48. IPB000550A 6-28 IPB000550B 39-72 IPB000550C 86-103 IPB000550D 116-133","Residues 5-147 are identical to a (PYROPHOSPHOKINASE TRANSFERASE) protein domain (PD003866) which is seen in HPPK_PORGI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Mon May 14 13:53:36 MDT 2001","Mon May 14 13:53:36 MDT 2001","Mon May 14 13:53:36 MDT 2001","Thu Feb 22 11:13:34 MST 2001","Thu Feb 22 11:13:34 MST 2001","Thu Feb 22 11:13:34 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Mar 9 16:07:45 MST 2001","-57% similar to PDB:2CG8 THE BIFUNCTIONAL DIHYDRONEOPTERIN ALDOLASE 6-HYDROXYMETHYL-7,8-DIHYDROPTERIN SYNTHASE FROM STREPTOCOCCUS PNEUMONIAE (E_value = 1.3E_16);-57% similar to PDB:1DY3 TERNARY COMPLEX OF 7,8-DIHYDRO-6-HYDROXYMETHYLPTERINPYROPHOSPHOKINASE FROM ESCHERICHIA COLI WITH ATP AND A SUBSTRATE ANALOGUE. (E_value = 1.7E_16);-57% similar to PDB:1EQ0 SOLUTION STRUCTURE OF 6-HYDROXYMETHYL-7,8-DIHYDROPTERIN PYROPHOSPHOKINASE COMPLEXED WITH MGAMPPCP (E_value = 1.7E_16);-57% similar to PDB:1EQM CRYSTAL STRUCTURE OF BINARY COMPLEX OF 6-HYDROXYMETHYL-7,8-DIHYDROPTERIN PYROPHOSPHOKINASE WITH ADENOSINE-5'-DIPHOSPHATE (E_value = 1.7E_16);-57% similar to PDB:1EX8 CRYSTAL STRUCTURE OF 6-HYDROXYMETHYL-7,8-DIHYDROPTERIN PYROPHOSPHOKINASE COMPLEXED WITH HP4A, THE TWO-SUBSTRATE-MIMICKING INHIBITOR (E_value = 1.7E_16);","","","Residues 7 to 137 (E-value = 1.9e-72) place PG1348 in the HPPK family which is described as 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) (PF01288)","Mon Mar 19 10:27:39 MST 2001","34541201","Thu Feb 22 11:13:34 MST 2001","Nakayama,K. and Shi,Y., A folK homolog of Porphyromonas gingivalis,Published Only in DataBase (1998) In press.","","Mon Mar 19 11:04:50 MST 2001","","1","","","PG1541" "PG1349","1620931","1622172","1242","ATGAATGTAAACGACTTCGAGATAATGGCTCCAGTCGGTTCGTACGAATCGCTTATGGCAGCCATCAAGGCAGGAGCAGATTCAGTTTACTTCGGGATTGAAGGACTGAATATGCGTGCGCGATCTGCCAACAACTTCACCACAGAAGATCTGTACAAAATAGCCGAGATTTGCAGAGATAAAGGCGTAAAGAGCTATTTAACGGTGAATACCGTCATATACGATGAGGACATAGCACTCATGCGCTCCGTCATCGATGCGGCACAAAAGGCACAAATATCTGCCATTATAGCTTCCGACGTAGCTGCGATGATGTATGCCAACGAGATCGGAGTAGAAGTGCATCTGTCCACTCAGCTCAATATCAGCAACGCGGAGGCCCTACGCTTTTATTCGCGCTTTGCCGATGTGGTCGTATTGGCAAGAGAGCTGAATATGGATCAGGTGCGTACAATCCACGAGACCATCGTCAGGGATAATATCTGTGGGCCTAAAGGCCATCCCGTACGTATAGAGATGTTTGCTCACGGCGCTCTGTGTATGGCCGTTTCGGGCAAGTGCTATCTAAGCCTGCACGAACACAACAGCTCCGCCAACAGAGGAGCCTGTGCGCAGATCTGCAGGAGGGGCTACACCGTCAAGGACAAGGATAGCGGTCTGGAACTGGACATTGAGAACCAATACATCATGTCGCCGAAAGATCTGAAGACTATTCATTTCATCAATAAGATGATGGATGCCGGCGTACGAGTATTCAAGATAGAAGGAAGGGCACGTGGCCCCGAATACGTCTATACGGTCTGCCGCTGCTATAAAGAAGCGATCGAAGCCTACTGCAACGGCACCTATGATGAAGAGGCCATAGGCCGGTGGGACGAACAATTGGCTACGGTATTCAACCGAGGCTTTTGGGATGGCTACTACCTCGGACAACGGCTCGGCGAATGGACACATCGTTACGGCTCAGGAGCTACGCGACAGAAAATATATGTAGGCAAGGGGATCAAATACTTCAGCCGTCTCGGTGTGGCTGAATTCGAGATAGAGTCCGGCGAACTGCATATAGGCGATGAGATTGTGATCACCGGCCCTACTACAGGTGTGATCATCCAAAAGGTGGAAGAGATCCGATACGAACTGCAAACCGTGGAAAAGGCGACAAAGGGACAACGCATTTCCATTCCGGTAAAGGAGAAAGTGCGTCCGTCGGACAAGCTCTACCGGTTCGACAAAAGAGAAGAA","6.40","-3.22","46662","MNVNDFEIMAPVGSYESLMAAIKAGADSVYFGIEGLNMRARSANNFTTEDLYKIAEICRDKGVKSYLTVNTVIYDEDIALMRSVIDAAQKAQISAIIASDVAAMMYANEIGVEVHLSTQLNISNAEALRFYSRFADVVVLARELNMDQVRTIHETIVRDNICGPKGHPVRIEMFAHGALCMAVSGKCYLSLHEHNSSANRGACAQICRRGYTVKDKDSGLELDIENQYIMSPKDLKTIHFINKMMDAGVRVFKIEGRARGPEYVYTVCRCYKEAIEAYCNGTYDEEAIGRWDEQLATVFNRGFWDGYYLGQRLGEWTHRYGSGATRQKIYVGKGIKYFSRLGVAEFEIESGELHIGDEIVITGPTTGVIIQKVEEIRYELQTVEKATKGQRISIPVKEKVRPSDKLYRFDKREE","1620922 1622172","PG1349 is identical to the N-terminal half of AF026946. Could it extend into the putative 1350, 1351 orfs?TIGR ID: PG1542","collagenase (hemagglutinin/protease?)","Cytoplasm","PG1349 corresponds to the previously sequenced AB006973 from GenBANK, a collagenase. GenBANK sequences Y15767, Y15766, Y15765, Y15674, Y15673, and Y15672 represent prtC sequences from other patients. PG1349 also corresponds to the first 417 amino acids of AF026946, a predicted hagE protein. See also AB006973 and M60404.Numerous significant hits in gapped BLAST; e.g. residues 7-414 are 36% similar to gb|AAC07088.1| collagenase of Aquifex aeolicus, residues 7-414 are 36% similar to gb|AAB85150.1| collagenase of Methanothermobacter thermautotrophicus, residues 7-407 are 36% similar to gb|AAB98071.1| collagenase (prtC) of Methanococcus jannaschii.This sequence is similar to BT3072.","
InterPro
IPR001539
Family
Peptidase U32
PD004398\"[120-286]TQ9R756_PORGI_Q9R756;
PF01136\"[78-314]TPeptidase_U32
PS01276\"[172-190]TPEPTIDASE_U32


","BeTs to 6 clades of COG0826COG name: Protease related to collagenaseFunctional Class: OThe phylogenetic pattern of COG0826 is -MT--q--EB-huj-------Number of proteins in this genome belonging to this COG is 2","***** IPB001539 (Peptidase family U32) with a combined E-value of 1.5e-59. IPB001539A 7-32 IPB001539B 171-208 IPB001539C 251-276","Residues 321-414 are 87% similar to a (COLLAGENASE HYDROLASE PROTEASE PRECURSOR) protein domain (PD014101) which is seen in O24788_PORGI.Residues 7-308 are 93% similar to a (PROTEASE PROTEIN HYDROLASE PUTATIVE) protein domain (PD004398) which is seen in O24788_PORGI.","","Thu Jun 14 11:49:23 MDT 2001","","Thu Jun 14 11:49:23 MDT 2001","Thu Jun 14 11:49:23 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:49:23 MDT 2001","Thu Jun 14 11:49:23 MDT 2001","","Mon Jun 25 15:50:36 MDT 2001","Thu Dec 7 14:14:04 MST 2000","Fri Dec 19 10:49:25 2003","Thu Mar 15 14:07:28 MST 2001","Mon Jun 25 15:50:36 MDT 2001","Mon Jun 25 15:50:36 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 7-312 show 33% similarity to PG0679, a protease.","Mon Jun 25 15:50:36 MDT 2001","Thu Mar 15 14:07:28 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 78 to 314 (E-value = 1.5e-72) place PG1349 in the Peptidase_U32 family which is described as Peptidase family U32 (PF01136)","Mon Jun 25 15:50:36 MDT 2001","34541202","","Kato,T., Takahashi,N. and Kuramitsu,H.K.Sequence analysis and characterization of the Porphyromonasgingivalis prtC gene, which expresses a novel collagenase activity.J. Bacteriol. 174, 3889-3895 (1992)","","Thu Dec 7 15:44:06 MST 2000","","1","","","PG1542" "PG1350","1622231","1622647","417","ATGAAAGAGAAAGAATACCTGTTCTCCCTCGACATGAAGGTGAGAGACTATGAATGCGACTTGCAGGGTGTGGTAAACAACAGCAACTATCAGCGCTATATGGAGCACACCCGCCATGAATTCTGGGAAAGCCTCGGAGATAATTTCGGACAAATGCACGAAAAAGGTCTTGATGCTTTCGTTTACAAAGTGACCATAACGTTCAAACAGTCCTTGCGTAGCGGCGATCGCTTCCGTAGCTGTCTGACCTGCCACAAGAAAGGCCCCAAACTCATTTTCATGCAGGACATTATCAGAGAAGACGGTGTGATGGCAGCCCGTGGCGAAGTGGAAGTAGTAGCCGTACAGGACGGTGTGCTCACCCGCGGAGAGTATTTCGATGTGCTGATGAAAGACATTTTGTCCAAAACCACCAAG","6.90","-0.18","16246","MKEKEYLFSLDMKVRDYECDLQGVVNNSNYQRYMEHTRHEFWESLGDNFGQMHEKGLDAFVYKVTITFKQSLRSGDRFRSCLTCHKKGPKLIFMQDIIREDGVMAARGEVEVVAVQDGVLTRGEYFDVLMKDILSKTTK","1622231 1622647 [Shadowed by 1730]","TIGR ID: PG1543","hypothetical protein","Cytoplasm","Residues 10-78 show 46% similarity to AC016447, A. thaliana unknown protein.","
InterPro
IPR006683
Domain
Thioesterase superfamily
PF03061\"[22-79]T4HBT
noIPR
unintegrated
unintegrated
G3DSA:3.10.129.10\"[1-116]TG3DSA:3.10.129.10
SSF54637\"[6-116]TSSF54637


","BeTs to 6 clades of COG0824COG name: Predicted esteraseFunctional Class: RThe phylogenetic pattern of COG0824 is --t--q-CEBRhuj---l---Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Feb 22 09:00:49 MST 2001","Wed Feb 21 17:13:05 MST 2001","Wed Feb 21 17:13:05 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Feb 21 17:13:05 MST 2001","34541203","","","","","","1","","","PG1543" "PG1353","1622735","1623502","768","ATGCTCATACTCCTTTCATGTGCCAAGACGATCGGTATTCCGAAGCGTTTGCCATCACATTTGACGACCACTTCGCCGATCTTCGATGAGCAGACCACAAAGATTGCTTTAGCTGCATCTTCCTGCGATATAAAGGAACTATCCCGACTACTCCGTATCAATAGAAAGTTGGCAGAAGAGAATCACCGACGCTGGCAGCACTTCTTCGAGGACGATTCACCCACTGCTCCGGCAGCATTGGCTTATACGGGTATGGTTTTCAAGAAGCTTGCTCCTGCCAATTTCAATGCTGACGATTGGCTCTATGCCTCCGAACATCTTCTTATCACCTCGTTCCTCTACGGTCTTTTGCGACCGAGTGACATGATTCGTCCATACAGGATGGAAGGATTTGCCCATCTGGGGGCACCCGTCGAAGATGAAGTATTCAACTTCTGGCGACCGTATCTTACGGATTTTCTGATCGAAAAGGTACGAGAAAAGGGTGGTGAGCTATGTTTTCTGGCCAGTGAAGAAATGAAAATGCTATTCGACTGGAAACGAGTAGAACAAGCCGTACGGGTAGTGACACCCCTCTTCAAAGTACCACAGCCCGATGGAGGTCTCAAACAGATCGTGATCTATACCAAAATGGCACGCGGACTGATGACAGCCCACCTCCTCACCCGCCGATGCCGCCATGTGGAAGAGATGCAACTCTTTTCGCCCGAAGGTTTTATCTTCCGGCCGGAGCTTTCGGATGAGAGCAACTATCTTTTCGTCATGGAA","7.20","0.51","29580","MLILLSCAKTIGIPKRLPSHLTTTSPIFDEQTTKIALAASSCDIKELSRLLRINRKLAEENHRRWQHFFEDDSPTAPAALAYTGMVFKKLAPANFNADDWLYASEHLLITSFLYGLLRPSDMIRPYRMEGFAHLGAPVEDEVFNFWRPYLTDFLIEKVREKGGELCFLASEEMKMLFDWKRVEQAVRVVTPLFKVPQPDGGLKQIVIYTKMARGLMTAHLLTRRCRHVEEMQLFSPEGFIFRPELSDESNYLFVME","1622714 1623502","TIGR ID: PG1544","conserved hypothetical protein","Cytoplasm, Periplasm","Residues 1-253 have 30% similarity to AE006042, P. multocida unknown protein.Residues 1-253 have 28% simialrity to U32779,H. influenzae conserved hypothetical protein.Residues 1-253 have 30% similarity to AE000111, E. coli hypothetical protein.","
InterPro
IPR005583
Family
Protein of unknown function DUF328
PF03883\"[1-256]TDUF328
noIPR
unintegrated
unintegrated
SSF69903\"[171-232]TSSF69903


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 1-235 are 31% similar to a (PROTEIN THRC-TALB INTERGENIC REGION) protein domain (PD017420) which is seen in YAAA_ECOLI.","","Thu Jun 14 11:49:40 MDT 2001","","Thu Jun 14 11:49:40 MDT 2001","Thu Jun 14 11:49:40 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:49:40 MDT 2001","Thu Jun 14 11:49:40 MDT 2001","","","Thu Feb 22 09:10:09 MST 2001","Mon Jun 25 15:53:41 MDT 2001","Thu Feb 22 09:10:09 MST 2001","","Mon Jun 25 15:53:41 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Jun 14 11:49:40 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 1 to 256 (E-value = 3.1e-16) place PG1353 in the DUF328 family which is described as Protein of unknown function (DUF328) (PF03883)","Mon Jun 25 15:53:41 MDT 2001","34541204","","","","","","1","","","PG1544" "PG1354","1623643","1624215","573","ATGACTCACGAACTCATTTCCCTGCCTTATGCGGTCGATGCACTGGCTCCTGTTATCAGCAAAGAAACAGTGGAATTCCACCACGGTAAGCACCTGAAGACCTATGTGGACAACCTCAATAAGCTCATCATCGGCACGGAATTTGAAAACGCTGACTTGAATACCATCGTACAAAAGAGCGAAGGCGGTATCTTCAACAATGCCGGCCAAACCCTCAACCACAATCTCTATTTCACTCAGTTCCGTCCGGGCAAGGGAGGAGCACCGAAAGGCAAACTGGGGGAAGCTATCGACAAACAATTCGGCTCATTCGAAAAGTTCAAAGAGGAGTTCAACACAGCCGGTACCACCCTCTTTGGTTCGGGCTGGGTATGGCTTGCATCCGATGCCAATGGCAAACTGTCCATCGAGAAGGAACCCAATGCCGGCAATCCCGTGCGCAAAGGGTTGAATCCTTTGCTCGGATTCGACGTATGGGAGCACGCATATTATCTGACTTACCAGAATCGTCGTGCCGACCACCTCAAAGATCTTTGGAGTATCGTTGACTGGGATATTGTAGAATCTCGGTAT","6.40","-2.31","21486","MTHELISLPYAVDALAPVISKETVEFHHGKHLKTYVDNLNKLIIGTEFENADLNTIVQKSEGGIFNNAGQTLNHNLYFTQFRPGKGGAPKGKLGEAIDKQFGSFEKFKEEFNTAGTTLFGSGWVWLASDANGKLSIEKEPNAGNPVRKGLNPLLGFDVWEHAYYLTYQNRRADHLKDLWSIVDWDIVESRY","1623643 1624215","TIGR ID: PG1545","superoxide dismutase Fe/Mn (cambialistic superoxide dismutase)","Cytoplasm, Extracellular","This sequence is similar to CT294.PG1354 is identical to a previously sequenced P.gingivalis protein in GenBank, BAA14182. PG1354 is essentially identical to previously sequenced P.gingivalis proteins in GenBank, S12882 and AAA25651.Numerous significant hits to superoxide dismutase proteins in gapped BLAST; e.g. residues 1-190 are 63% similar to dbj|BAA02902.1| superoxide dismutase of Bacteroides fragilis, residues 1-189 are 57% similar to prf||2014300A Fe superoxide dismutase of Legionella pneumophila, residues 1-191 are 52% similar to emb|CAB84366.1| putative superoxide dismutase of Neisseria meningitidis Z2491, residues 1-191 are 52% similar to gb|AAG30301.1| Fe-superoxide dismutase of Neisseria gonorrhoeae.","
InterPro
IPR001189
Family
Manganese and iron superoxide dismutase
PD000475\"[95-191]TSODismutase
PR01703\"[6-17]T\"[27-40]T\"[65-78]T\"[118-126]T\"[155-167]TMNSODISMTASE
PTHR11404\"[1-191]TSODismutase
PF00081\"[2-82]TSod_Fe_N
PF02777\"[86-191]TSod_Fe_C
PS00088\"[157-164]TSOD_MN
SSF46609\"[1-84]TSODismutase
SSF54719\"[84-191]TSODismutase
noIPR
unintegrated
unintegrated
PTHR11404:SF8\"[1-191]TPTHR11404:SF8


","BeTs to 11 clades of COG0605COG name: Superoxide dismutaseFunctional Class: PThe phylogenetic pattern of COG0605 is --t-Yq-cEBrhuj--o-inxNumber of proteins in this genome belonging to this COG is 1","***** IPB001189 (Manganese and iron superoxide dismutase (SODM)) with a combined E-value of 2.8e-79. IPB001189A 5-40 IPB001189B 67-83 IPB001189C 89-126 IPB001189D 152-184","Residues 2-191 are 93% similar to a (SUPEROXIDE DISMUTASE OXIDOREDUCTASE MANGANESE MN IRON) protein domain (PD000475) which is seen in SODF_PORGI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Mar 27 18:34:31 2002","Mon Mar 19 12:50:41 MST 2001","Wed Mar 27 18:34:31 2002","Mon Mar 19 11:57:49 MST 2001","Mon Mar 19 11:57:49 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Mar 19 11:57:49 MST 2001","-94% similar to PDB:1QNN CAMBIALISTIC SUPEROXIDE DISMUTASE FROM PORPHYROMONAS GINGIVALIS (E_value = 4.9E_103);-94% similar to PDB:1UER Crystal structure of Porphyromonas gingivalis SOD (E_value = 4.9E_103);-93% similar to PDB:1UES Crystal structure of Porphyromonas gingivalis SOD (E_value = 4.2E_102);-62% similar to PDB:1ISA STRUCTURE-FUNCTION IN E. COLI IRON SUPEROXIDE DISMUTASE: COMPARISONS WITH THE MANGANESE ENZYME FROM T. THERMOPHILUS (E_value = 4.1E_49);-62% similar to PDB:1ISB STRUCTURE-FUNCTION IN E. COLI IRON SUPEROXIDE DISMUTASE: COMPARISONS WITH THE MANGANESE ENZYME FROM T. THERMOPHILUS (E_value = 4.1E_49);","","","Residues 2 to 82 (E-value = 2.6e-42) place PG1354 in the Sod_Fe_N family which is described as Iron/manganese superoxide dismutases, alpha-hairpin domain (PF00081)Residues 86 to 191 (E-value = 3.8e-69) place PG1354 in the Sod_Fe_C family which is described as Iron/manganese superoxide dismutases, C-terminal domain (PF02777)","Mon Mar 19 11:57:49 MST 2001","34541205","Mon Mar 19 11:57:49 MST 2001","Nakayama,K. 1990. The superoxide dismutase-encoding gene of the obligately anaerobic bacterium Bacteroides gingivalis. Gene 96 (1): 149-150. PubMed: 2265754. Choi,J.I., Takahashi,N., Kato,T. and Kuramitsu,H.K. 1991. Isolation, expression, and nucleotide sequence of the sod gene from Porphyromonas gingivalis. Infect. Immun. 59 (4): 1564-1566. PubMed: 1840572. Amano,A., Shizukuishi,S., Tsunemitsu,A., Maekawa,K. and Tsunasawa,S. 1990. The primary structure of superoxide dismutase purified from anaerobically maintained Bacteroides gingivalis. FEBS Lett. 272 (1-2): 217-220. PubMed: 2226833. Amano,A., Shizukuishi,S., Tamagawa,H., Iwakura,K., Tsunasawa,S. and Tsunemitsu,A. 1990. Characterization of superoxide dismutases purified from either anaerobically maintained or aerated Bacteroides gingivalis. J. Bacteriol. 172 (3): 1457-1463. PubMed: 2307656.Sugio,S., Hiraoka,B.Y. and Yamakura,F. 2000. Crystal structure of cambialistic superoxide dismutase from porphyromonas gingivalis. Eur. J. Biochem. 267 (12): 3487-3495. PubMed: 10848964.Hiraoka BY, Yamakura F, Sugio S, Nakayama K.A change of the metal-specific activity of a cambialistic superoxide dismutasefrom Porphyromonas gingivalis by a double mutation of Gln-70 to Gly and Ala-142to Gln.Biochem J. 2000 Jan 15;345 Pt 2:345-50.PMID: 10620511Lynch MC, Kuramitsu HK.Role of superoxide dismutase activity in the physiology of Porphyromonas gingivalis.Infect Immun. 1999 Jul;67(7):3367-75.PMID: 10377114","","Tue Jun 5 09:34:14 MDT 2001","","1","","","PG1545" "PG1355","1624405","1624755","351","ATGTACTATTATAACCGAATTGGTTTAGGCTCCAAAATTTTCCCGTTTGCTACTCCTCAAAACGCGGTTCGTAAACTTTTTTATTTTGGCGTGGGAAGCAAAAAATTCTCACGCCACAACGAAAAAATTCTCGCGCCACTTTTTCAGGGAATACGCGCCACAATCGGAGCATTTCCGGTTCGTGTTTTTTTGAATAGCTCCTTTTGCAAACAAGCCGAGGCAATCGACGAAAATCTGCCGAGGATTCACCTTCCGGAAAAAGACTTTCCTGAGGAAAAGATCGAAAAGATTCGTTCACACATACATTTACGGCAAAAATTGTCCGACAAAAAGATTACATTTGCACCCGAA","10.70","9.90","13565","MYYYNRIGLGSKIFPFATPQNAVRKLFYFGVGSKKFSRHNEKILAPLFQGIRATIGAFPVRVFLNSSFCKQAEAIDENLPRIHLPEKDFPEEKIEKIRSHIHLRQKLSDKKITFAPE","1624405 1624755","TIGR ID: PG1547","trypsin-like proteinase prtT","Cytoplasm","PG1355 was previously isolated, charactierzed and sequenced as A49228 by Otogoto,J. and Kuramitsu,H.K. ","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Feb 22 09:18:49 MST 2001","Thu Feb 22 09:18:49 MST 2001","Thu Feb 22 09:18:49 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","The amino terminal domain of PG1355 shows strong similarity to:short domains of PG1849.2, PG1702, PG1728.1 and PG0326, all hypothetical proteins.","Thu Mar 15 14:15:18 MST 2001","Thu Mar 15 14:15:18 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon May 14 14:14:04 MDT 2001","34541207","Thu Feb 22 09:18:49 MST 2001","Otogoto,J. and Kuramitsu,H.K., Isolation and characterization of the Porphyromonas gingivalis prtT gene, coding for protease activity, Infect. Immun. 61 (1), 117-123 (1993)","","Thu Feb 22 09:18:49 MST 2001","","1","","","PG1547" "PG1356","1624984","1627503","2520","ATGAAACGTATCTTCTACACCTTAGGGCTATTATTACTGTGTCTCCCTATGCTCCAGGCAGGACCGGTGACACGATCCAAAGCCGAACAGACGGCTAAGAACTTTTTTGCCAAACGACAACCCACGCTGTCTTCATCGACAGCGAGTCTCCGGATGGATTTCGTTTACAAAGCTGCAGAAAGAGAGGAGGCACTATTCTTCGTTTTCAATCGAGGAGAGAAAGACGGATTTCTCCTCGTCGCAGCGGATGATCGGTTCCCGGAGGTGATCGGATATGCTTTCAAGGGGCACTTCGATGCGGCCCGTATACCGGACAATCTCAGAGGGTGGCTCAAAGGTTATGAACGTGAAATGCTTGCTGTAATGGACGGCAAGGCAGAGCCGATAGATCCTATCCGTGAAGCCAAGCCTACACGGGACCTGCCATCATCCATTGCCCCTATTTTGGAAACGGGCGAACATGCATCGGATCCGATCTTGTGGGATCAGGGCTATCCATTTAACACCTTGCATCCCCTGCTTCCTTCCGGGCAGCAGGCTTATACCGGTTGTGTTGCCACTGCCATGGGACAAATCATGCGTCACTACAAGTGGCCGGAGAAGGCTTCCGGCGAATATGACTACTACGATGATATGACGGGGACGCATACCCACTATTCAGGCACATTCGGTGAGACCTATAACTGGAGCAAGATGCCCGGTAACATCAGTGTTGGTATCAGCCCTGAAGAAGTAAAAGCCTTAAGTACTTTCATGAGAGATGTCAGCTTTTCTGTCAATATGCAGTTTGCCGATTTCGGCAGTGGCACTTTCTCCATATTTGTCGAACGCGCCCTGCGGGAGACCTTTCATTACAAGAAATCGCTTCGTTACATCCATCGCTCTCTCCTTCCCGGTAAGGAATGGAAAGACATGATTCGTAAGGAACTGGCAGAAAACAGACCTGTGTATTATGCCGGTGCAGACGGATCGATGGGACATGCTTTCGTTTGCGATGGATACGAACCAGACGGAACGTTCCACTTCAACTGGGGATGGGGTGGCATGAGTAACGGTAATTTCTATCTCAATCTACTCAATCCGGGTTCGCTTGGCACACGCGCAGGCGATGGAGGCTACTCTACTGACCAAGAGGTTGTCATAGGCATAGAGCCGGCCAGCAATGAAGTCCCCGGTATCGTACCGGATCCGACCATCACGCTCTATGGATTGCAACACAATATGTCTGATGAAGCACTTGACCTGAGTGTAAAAATCAAGAACTACTCCACATATGCAGGGGATGTGAAATTGGCTTATCGCCTGACGCTTCCCAATGGAACGGAAACGACTAACCCAGCCGTCACCGTCCCTATCGTTTGGGAAGACATTATCGGAGAAAGCACGGGCAACATAACCATACCATGCAGTCAATTTGCCGAGGGGAAAAATACCATCTCCATACTCTATCGAACAGATGGCATGGCAGATTGGAAAGAGCTTAAGCACATACTTATGGGGCTTGTCAATAAGATAGAAGTGACTATGCCTGCCGGAGATGTAGCTTACTCCGTTGCCGATGCCAGGATCGTTCTCAAAGACGGTTCTCTTTCGCACGACCTGAAAGCATATTCCGACTGCAAACTCAGTGCCACAGTCTACAACCCGGGTACGGAAGAATTTCGTAGTCGCGTCACCTTTGCCCTCCGCAATACAGAGGGACGGCTCTATTTCCTTGGCAGACATTTAGTAGAATTACACCCGGGAGATGAAGATGGCGAAAAAGTTTCGCTGACAATAACAGGGCTCAAGGCTCGTGCAGGACAATACATGCTTGTCTGTACGGGCGATATGGAATCGCTTATGGAAGATGCCTCATGGATAGAGTTGGCTTCCATAGAAGTAGCAGAGCATACGAGCACCCATTCATCGTTACTGGTGGCCTCCAACCCACAGATCGATCTTCTCACAGTTCATCGGGCCAATCCCGAGACATTGCCGACTTTCAGCATTACAAATGAAGGTGGTGCTACTTTCTCCGGGAAAATCGAAATAGTGGCTATAAAGGCTTTCTCGGAAACTTTCTTCCAAGCGAAAGAAGAACACATGAGTCTCGCCCAAGGGGAAACCAAAGTATTGTCTCCGGAGCTGACTGCGAACTCTTCTCTCTATACAAATGCCGAACTCTTTCCCGATGGCACCTATTACATTGTCATCAGAGAGCAGGGATTTTGGGATCCGATCGATTTGTTTGGGGACTATTACTATCGTATCCGTCTCATTACGGATCTATCCTCTTCGGACATCGCTGGTAAGGATGTTTCTACTATAGTACTTTATCCCAATCCTGCTCACGACTATGTCCATGTAGCCATTCCTCCCACATATGCGGGCAGCACACTTCGTTTGTTCGATATTCAAGGGCGAATGCAGCTCTCCACGAAGATCGAATCTGCCGATATGCGTCTCGACGTCGAACGTCTTCCGAAGGGCACCTATATCGTTGTGGTAGAAGACATGGTAGGGAAGCTCTTTATTCGT","5.30","-21.18","93416","MKRIFYTLGLLLLCLPMLQAGPVTRSKAEQTAKNFFAKRQPTLSSSTASLRMDFVYKAAEREEALFFVFNRGEKDGFLLVAADDRFPEVIGYAFKGHFDAARIPDNLRGWLKGYEREMLAVMDGKAEPIDPIREAKPTRDLPSSIAPILETGEHASDPILWDQGYPFNTLHPLLPSGQQAYTGCVATAMGQIMRHYKWPEKASGEYDYYDDMTGTHTHYSGTFGETYNWSKMPGNISVGISPEEVKALSTFMRDVSFSVNMQFADFGSGTFSIFVERALRETFHYKKSLRYIHRSLLPGKEWKDMIRKELAENRPVYYAGADGSMGHAFVCDGYEPDGTFHFNWGWGGMSNGNFYLNLLNPGSLGTRAGDGGYSTDQEVVIGIEPASNEVPGIVPDPTITLYGLQHNMSDEALDLSVKIKNYSTYAGDVKLAYRLTLPNGTETTNPAVTVPIVWEDIIGESTGNITIPCSQFAEGKNTISILYRTDGMADWKELKHILMGLVNKIEVTMPAGDVAYSVADARIVLKDGSLSHDLKAYSDCKLSATVYNPGTEEFRSRVTFALRNTEGRLYFLGRHLVELHPGDEDGEKVSLTITGLKARAGQYMLVCTGDMESLMEDASWIELASIEVAEHTSTHSSLLVASNPQIDLLTVHRANPETLPTFSITNEGGATFSGKIEIVAIKAFSETFFQAKEEHMSLAQGETKVLSPELTANSSLYTNAELFPDGTYYIVIREQGFWDPIDLFGDYYYRIRLITDLSSSDIAGKDVSTIVLYPNPAHDYVHVAIPPTYAGSTLRLFDIQGRMQLSTKIESADMRLDVERLPKGTYIVVVEDMVGKLFIR","1624849 1627503","TIGR ID PG0990","protease/hemagglutinin PrtT","Cytoplasm, Extracellular","This sequence corresponds to the previously sequenced S75942 in GenBANK, a predicted 99 kDa cysteine protease/hemagglutinin inP.gingivalis, strain ATCC 53977.Numerous significant hits to pyrogenic exotoxin B of Streptococcus pyogenes in gapped BLAST; e.g. residues 8-385 are 31% similar to gb|AAA26980.1| pyrogenic exotoxin B of Streptococcus pyogenes.","
InterPro
IPR000200
Family
Peptidase C10, streptopain
PD004169\"[156-385]TQ53481_PORGI_Q53481;
PR00797\"[177-201]T\"[247-263]T\"[275-294]T\"[308-332]T\"[340-361]T\"[362-383]TSTREPTOPAIN
PF01640\"[4-385]TPeptidase_C10
noIPR
unintegrated
unintegrated
signalp\"[1-20]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 602-851 are 98% similar to a (HEMIN-REGULATED PROTEIN THIOL PROTEASE/HEMAGGLUTININ) protein domain (PD039116) which is seen in P72198_PORGI.Residues 151-430 are 99% similar to a (EXOTOXIN B PYROGENIC PYROGEN) protein domain (PD004169) which is seen in PRTT_PORGI.Residues 46-150 are 88% similar to a (THIOL PROTEASE/HEMAGGLUTININ PRTT) protein domain (PD133794) which is seen in PRTT_PORGI.Residues 431-601 are 98% similar to a (THIOL PROTEASE/HEMAGGLUTININ PRTT) protein domain (PD133795) which is seen in PRTT_PORGI.","","Thu Jul 5 12:26:21 MDT 2001","","Thu Jul 5 12:26:21 MDT 2001","Thu Jul 5 12:26:21 MDT 2001","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","Thu Jul 5 12:26:21 MDT 2001","Thu Jul 5 12:26:21 MDT 2001","","Thu Jul 5 12:26:21 MDT 2001","Tue Dec 12 14:36:05 MST 2000","Thu Jul 5 12:35:08 MDT 2001","Thu Dec 7 15:17:16 MST 2000","","Mon Mar 19 13:02:09 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1356 is similar to PG1251, a predicted thiol protease (PrtT related). Residues 46-884 are 34% similar to residues 1-841 of PG1251. Also, weak similarity to PG1208, immunoreactive 47 kDa antigen PG97, and PG1838, an immunoreactive antigen.","Mon Jun 4 15:38:41 MDT 2001","Mon Mar 19 13:02:09 MST 2001","-50% similar to PDB:1PVJ Crystal structure of the Streptococcal pyrogenic exotoxin B (SpeB)- inhibitor complex (E_value = 3.6E_48);-49% similar to PDB:1DKI CRYSTAL STRUCTURE OF THE ZYMOGEN FORM OF STREPTOCOCCAL PYROGENIC EXOTOXIN B ACTIVE SITE (C47S) MUTANT (E_value = 1.4E_47);-40% similar to PDB:2I0Z Crystal structure of a FAD binding protein from Bacillus cereus, a putative NAD(FAD)-utilizing dehydrogenases (E_value = 1.4E_47);-38% similar to PDB:1W5D CRYSTAL STRUCTURE OF PBP4A FROM BACILLUS SUBTILIS (E_value = 1.4E_47);-40% similar to PDB:1D3A CRYSTAL STRUCTURE OF THE WILD TYPE HALOPHILIC MALATE DEHYDROGENASE IN THE APO FORM (E_value = 1.4E_47);","","","No significant hits to the Pfam 11.0 database","Mon May 14 14:16:52 MDT 2001","","","Madden,T.E., Clark,V.L. and Kuramitsu,H.K.Revised sequence of the Porphyromonas gingivalis prtT cysteineprotease/hemagglutinin gene: homology with streptococcal pyrogenic exotoxin B/streptococcal proteinase.Infect. Immun. 63 (1), 238-247 (1995)Kuramitsu,H.K.Isolation and characterization of the Porphyromonas gingivalis prtT gene, coding for protease activityInfect. Immun. 61, 117-123 (1993)Otogoto,J. and Kuramitsu,H.K.Isolation and characterization of the Porphyromonas gingivalis prtT gene, coding for protease activityInfect. Immun. 61 (1), 117-123 (1993)","","Tue Dec 12 14:58:40 MST 2000","","1","","","PG1548" "PG1357","1628581","1629006","426","ATGGCTCTTCACCGCTATGACGTTCGTCTCAATTGTGGCGAAAGTGGTAAGGGAAAAGGTGGTGCCGTATTCTCCGGCAAGACAGAAATGGATCAGGCTACTACCGTTCCGACAGACGGATATACTGTAGATGTTCTCGGCCGTATTACAGTCAAGTACGAAATGGGACCTGATGGTCATCAGATGGAATATGAAGAACAGGGCTTCAGCGAAGTGATTACCGGCAAGAAGAACGCACAGGGATTTGCTTCAGGTGGTTGGCTGGAATTCTCTCACGGTCCTGCCGGTCCCACTTACAAGCTGAGCAAAAGAGTCTTCTTCGTTCGTGGTGCTGATGGTAATATTGCCAAAGTGCAGTTCACTGACTATCAGGATGCAGAACTCAAAAAAGGAGTCATCACTTTCACTTATACATACCCCGTTAAA","7.60","0.67","15547","MALHRYDVRLNCGESGKGKGGAVFSGKTEMDQATTVPTDGYTVDVLGRITVKYEMGPDGHQMEYEEQGFSEVITGKKNAQGFASGGWLEFSHGPAGPTYKLSKRVFFVRGADGNIAKVQFTDYQDAELKKGVITFTYTYPVK","1628359 1629006","See PG1358. Simpson et al. (2000) report that hmuR (PG1358) and hmuY are cotranscribed and negatively regulated by iron. Upstream from PG1357 is a Fur binding consensus sequence.TIGR ID: PG1551","tonB-dependent receptor HmuY","Periplasm, Cytoplasm","This sequence is identical to the previously sequenced AF200358 in GenBANK, a predicted HmuY protein. Two weak significant hits to unknown proteins of Bacteroides fragilis in gapped BLAST; e.g. residues 1-137 are 35% similar to gbAAD40726.1AF048749_22, residues 1-137 are 35% similar to gbAAD56752.1AF125164_25.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 11:50:06 MDT 2001","","Thu Jun 14 11:50:06 MDT 2001","Thu Jun 14 11:50:06 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:50:06 MDT 2001","Thu Jun 14 11:50:06 MDT 2001","","Mon Jun 25 15:58:43 MDT 2001","Mon May 14 14:23:26 MDT 2001","Wed Jul 9 19:00:32 2008","Thu Dec 7 13:00:49 MST 2000","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Jul 9 19:00:32 2008","-48% similar to PDB:1S4V The 2.0 A crystal structure of the KDEL-tailed cysteine endopeptidase functioning in programmed cell death of Ricinus communis endosperm (E_value = );-44% similar to PDB:1Y0F The structure of collagen type I. Single type I collagen molecule (E_value = );-44% similar to PDB:1YGV The structure of collagen type I. Single type I collagen molecule: rigid refinment (E_value = );-38% similar to PDB:1MPR MALTOPORIN FROM SALMONELLA TYPHIMURIUM (E_value = );-38% similar to PDB:2MPR MALTOPORIN FROM SALMONELLA TYPHIMURIUM (E_value = );","","","No significant hits to the Pfam 11.0 database","Mon Jun 25 15:58:43 MDT 2001","34541209","","Olczak T, Sroka A, Potempa J, Olczak M., Porphyromonas gingivalis HmuY and HmuR: further characterization of a novel mechanism of heme utilization. Arch Microbiol. 2008 Mar;189(3):197-210. Epub 2007 Oct 6.PMID: 17922109Lewis JP, Plata K, Yu F, Rosato A, Anaya C., Transcriptional organization, regulation and role of the Porphyromonas gingivalis W83 hmu haemin-uptake locus., Microbiology. 2006 Nov;152(Pt 11):3367-82.PMID: 17074906 Olczak T, Siudeja K, Olczak M., Purification and initial characterization of a novel Porphyromonas gingivalis HmuY protein expressed in Escherichia coli and insect cells.Protein Expr Purif. 2006 Oct;49(2):299-306. Epub 2006 Jun 6.PMID: 16829134Simpson W, Olczak T, Genco CA.Characterization and expression of HmuR, a TonB-dependent hemoglobin receptor of Porphyromonas gingivalis.J Bacteriol. 2000 Oct;182(20):5737-48.PMID: 11004172","","Wed Jul 9 19:00:32 2008","","1","","","PG1551" "PG1357.1","1652678","1652941","264","TTGAGCCTGCGATTTATATACAAAATCACTTACGATCTATATATTTATCAAAAACGATTTAAATATAAAATGAAAACGATTTGTATACAAATTGAAAACGCTTTATATACAAATCGTTGTACGGCTTGTTTTAAGTGGAATTTCGATCTATGGCAGTTCCTTTTCCCTCCACTTTTACCTTGCTTTTCTCCTCTCTACAGATACTTATTTGGAATCGTTCCAAACTCGTCTTCGTTGTTGAAAACTTTTTTGGCGCATGATTTT","","","10728","LSLRFIYKITYDLYIYQKRFKYKMKTICIQIENALYTNRCTACFKWNFDLWQFLFPPLLPCFSPLYRYLFGIVPNSSSLLKTFLAHDF","","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
tmhmm\"[50-70]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Thu Feb 22 09:59:36 MST 2001","","Thu Feb 22 09:23:08 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1-88 have 81% similarity to PG0340.1.Residues 8-88 have 49% similarity to hypothetical protein PG1821.1. ","Thu Feb 22 09:23:08 MST 2001","Mon May 14 15:17:20 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon May 14 15:17:20 MDT 2001","","","","","","","1","","","" "PG1358","1629024","1630961","1938","ATGAAAAGTGTAGTAACAAAGCAGGCCCTCATCGGCCTGCTTTTCTTTAGTATAAGTATATACTCCCATGCGGCCAACCCTCCGGCCCAACCTACCGACACCATCGTATCCGGCAATATCGCACTTGAGGATATAGTGGTGACCGGTAGCCGTACAGCCCGTCTGCTTAAAGATGTACCTGTCCCCACAAAGGTGTTCAAGGCCAAAGATATCAAAGCTATAGCCCCATCTTCTTTCATTGACGTACTGCAGTATATTCTTCCCGGGATCGAGTTTACCAAGCATGGTTCCAGAGATCAGCTCAATGCTCAGGGATTTGACGAAAGTTCTATTCTCTTCCTCGTCGATGGCGAATTGATTTCAACGGGATCTACCAGTGGAATAGACTTCGAACGAATCAATCCGGATGACATCGAGCGAATCGAAGTGCTTCGTGGAGCTTCCTCTGCTTTGTACGGATCTAATGCCATCGGAGGTGTTATCAATATCATCACCCGTACAGCCAAGGATCCTTTTCGCGTATCTGCTTCGGCTCGATACGATAGTCGCGACGGACAGAAATACGATGTGGCAGCAGGAGTGAAACGTGGGATCTTCACCAGTCAGTCCGGCGTACAATATAGAGCAGACAAAAGTTATATTTTGGCCGATCAGTTCGAGCAGGAACTGAATGTTGCAGGCAATACGACATGGAATATAAATCAGAAGTTTACAATCTCTCCGACGGAAAACTTATCCTTCAACCTTACCGGACTGGTGAATCTGCGTAAGCAGCACTGGACGGATAAGATCGATTTTCTGTACAACTCCTACGATGTCAAAGCCGGTGCCAACTGGCGTATCAGCGAGACTTCGGATCTGGACGTCTCTTATCATTACGACAAATATAGCCGTGATACCTGTCTGATCAAGACTGAGAACCAAAAGAAACTTCCCATTTTCGATGAGGATATGCACCATTTGCGAGCACAATACAATCTCAATCTTGCTGAAGTCCACCTTCTCAATGTGGGTCTGGAGTATATCCATGATAATGTAGCATCGCCCCGTCTTTCCTCTCCGAACGACCCGGGGGAAAAGTCCGTGAACAACAAAATCCTATACGGACAGTACATATATAAAGTTACCCCCAAACTCGTATTGAGCTATGGAGGGCGCTTGGACAAGCACTCCGGATTCGGCTTGTACTATACATCGCGCCTGTCTGCCATGTACAAGTGCAGCCATGTCACCAATCGCTTGTCCTACGCGGAAGGGTATCGTGCCCCCTCTTTGCAGGAAATGTACTTTTTCTTCAATCATGGTGCTTTCTTTATTTACGGCAATCCGGATTTGAAGCCGGAGAAGAGTCGCATGCTCTCATACTCGGCAGAAGCTCACTGGAACAAGCTTACACTGATGGGGAATGTCTTCTTCAATCATGTTCGCAATCGGATCGATTTCACCTACAAAGGCACAGATTTGATCTACACCAACGTATCGAAAGAAATGAGAATATTCGGCTTTGAAGGACAAGCGAATGTGGTACTGCCTTACGGCTTTGGTTTTCGAGCTTCATATTCCTACACTTATGATCGATGGAAGGCGACCGATAAGGCCGGAACTGAGATGAAGCTCTCAAACACCCGCCCTCATGCAGCTACTGCCACTCTCTCTTATGGACATAATTTTTCGAAGAATTACAGACTAGCCTCCAACTTCTCCACGCGCTTCCTTTCCGATCTGAAAACAGGGCGTATGAACTCCGACGAGTTGTTTGAGGAAATAACGTATCCGGGTTATACGATCTGTCGTTTGGATATTGAAAATCATTTCTATCGGAACTATACGCTCCATATCGGTGCGGAGAACCTGTTCGATTATAAACCCAAAGCATTGGCATTCAATTCCCCGACATCACCCGGACGTATCATATACGGGTTGGTTCGGATCACTTTC","9.50","10.98","73106","MKSVVTKQALIGLLFFSISIYSHAANPPAQPTDTIVSGNIALEDIVVTGSRTARLLKDVPVPTKVFKAKDIKAIAPSSFIDVLQYILPGIEFTKHGSRDQLNAQGFDESSILFLVDGELISTGSTSGIDFERINPDDIERIEVLRGASSALYGSNAIGGVINIITRTAKDPFRVSASARYDSRDGQKYDVAAGVKRGIFTSQSGVQYRADKSYILADQFEQELNVAGNTTWNINQKFTISPTENLSFNLTGLVNLRKQHWTDKIDFLYNSYDVKAGANWRISETSDLDVSYHYDKYSRDTCLIKTENQKKLPIFDEDMHHLRAQYNLNLAEVHLLNVGLEYIHDNVASPRLSSPNDPGEKSVNNKILYGQYIYKVTPKLVLSYGGRLDKHSGFGLYYTSRLSAMYKCSHVTNRLSYAEGYRAPSLQEMYFFFNHGAFFIYGNPDLKPEKSRMLSYSAEAHWNKLTLMGNVFFNHVRNRIDFTYKGTDLIYTNVSKEMRIFGFEGQANVVLPYGFGFRASYSYTYDRWKATDKAGTEMKLSNTRPHAATATLSYGHNFSKNYRLASNFSTRFLSDLKTGRMNSDELFEEITYPGYTICRLDIENHFYRNYTLHIGAENLFDYKPKALAFNSPTSPGRIIYGLVRITF","1629024 1630961","Simpson et al. (2000) report that humR and hmuY (PG1357) are cotranscribed and negatively regulated by iron.TIGR ID: PG1552","tonB-dependent receptor HmuR (or HemR)","Outer membrane, Cytoplasm","This sequence corresponds to the previously sequenced PGU87395 in GenBANK, a predicted tonB dependent HmuR receptor. See also U54787.Numerous significant hits in gapped BLAST; e.g. residues 11-636 are 28% similar to gbAAD40727.1AF048749_23 putative TonB-dependent outer membrane receptor protein of Bacteroides fragilis, residues 40-622 are 27% similar to gbAAG05310.1AE004618_4 probable TonB-dependent receptor of Pseudomonas aeruginosa, residues 43-620 are 25% similar to dbjBAB36470.1 colicin I receptor precursor of Escherichia coli O157:H7.","
InterPro
IPR000531
Domain
TonB-dependent receptor
PF00593\"[398-646]TTonB_dep_Rec
InterPro
IPR012910
Domain
TonB-dependent receptor, plug
PF07715\"[55-160]TPlug
noIPR
unintegrated
unintegrated
G3DSA:2.170.130.10\"[35-165]TG3DSA:2.170.130.10
G3DSA:2.40.170.20\"[167-646]TG3DSA:2.40.170.20
SSF56935\"[42-646]TSSF56935


","BeTs to 4 clades of COG1629COG name: Outer membrane receptor proteins, mostly Fe transportFunctional Class: PThe phylogenetic pattern of COG1629 is -----q-CE--HUJ-------Number of proteins in this genome belonging to this COG is 8","No significant hit to the Blocks database.","Residues 102-171 are identical to a (RECEPTOR PROTEIN OUTER MEMBRANE PRECURSOR SIGNAL TONB) protein domain (PD000492) which is seen in P72198_PORGI.Residues 413-622 are 24% similar to a (PROTEIN RECEPTOR OUTER MEMBRANE PRECURSOR SIGNAL TONB) protein domain (PD000484) which is seen in YF67_HAEIN.Residues 172-294 are identical to a (HEMB) protein domain (PD081291) which is seen in P95494_PORGI.Residues 7-101 are 88% similar to a (HEMIN-REGULATED PROTEIN HEMB) protein domain (PD030017) which is seen in P72198_PORGI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Fri Apr 16 10:09:39 2004","Mon May 14 14:27:42 MDT 2001","Fri Apr 16 10:09:39 2004","Mon Mar 19 13:39:25 MST 2001","","Mon Mar 19 13:39:25 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 42-646 are 24% similar to residues 111-755 of PG0601, a predicted tonB-linked outer membrane receptor; 'PG13'.","Wed Jul 9 19:10:06 2008","Wed Jul 9 19:10:06 2008","-40% similar to PDB:1NQE OUTER MEMBRANE COBALAMIN TRANSPORTER (BTUB) FROM E. COLI (E_value = 2.3E_23);-40% similar to PDB:1NQG OUTER MEMBRANE COBALAMIN TRANSPORTER (BTUB) FROM E. COLI, WITH BOUND CALCIUM (E_value = 2.3E_23);-40% similar to PDB:1NQH OUTER MEMBRANE COBALAMIN TRANSPORTER (BTUB) FROM E. COLI, WITH BOUND CALCIUM AND CYANOCOBALAMIN (VITAMIN B12) SUBSTRATE (E_value = 2.3E_23);-40% similar to PDB:1UJW Structure of the complex between BtuB and Colicin E3 Receptor binding domain (E_value = 2.3E_23);-40% similar to PDB:2GSK Structure of the BtuB:TonB Complex (E_value = 2.3E_23);","","","Residues 57 to 646 (E-value = 6.4e-113) place PG1358 in the TonB_dep_Rec family which is described as TonB dependent receptor (PF00593)","Mon Mar 19 13:39:25 MST 2001","34541210","","Olczak T, Sroka A, Potempa J, Olczak M., Porphyromonas gingivalis HmuY and HmuR: further characterization of a novel mechanism of heme utilization., Arch Microbiol. 2008 Mar;189(3):197-210. Epub 2007 Oct 6.PMID: 17922109Lewis JP, Plata K, Yu F, Rosato A, Anaya C., Transcriptional organization, regulation and role of the Porphyromonas gingivalis W83 hmu haemin-uptake locus. Microbiology. 2006 Nov;152(Pt 11):3367-82.PMID: 17074906Olczak T., Analysis of conserved glutamate residues in Porphyromonas gingivalis outer membrane receptor HmuR: toward a further understanding of heme uptake., Arch Microbiol. 2006 Nov;186(5):393-402. Epub 2006 Jul 28.PMID: 16874469Liu X, Olczak T, Guo HC, Dixon DW, Genco CA., Identification of amino acid residues involved in heme binding and hemoprotein utilization in the Porphyromonas gingivalis heme receptor HmuR.Infect Immun. 2006 Feb;74(2):1222-32.PMID: 16428772Simpsonv W, Olczak T, Genco CA., Lysine-specific gingipain K and heme/hemoglobin receptor HmuR are involved in heme utilization in Porphyromonas gingivalis. Acta Biochim Pol. 2004;51(1):253-62.PMID: 15094847Olczak T, Dixon DW, Genco CA., Binding specificity of the Porphyromonas gingivalis heme and hemoglobin receptor HmuR, gingipain K, and gingipain R1 for heme, porphyrins, and metalloporphyrins., J Bacteriol. 2001 Oct;183(19):5599-608.PMID: 11544222Simpson,W., Wang,C.Y., Mikolajczyk-Pawlinska,J., Potempa,J.,Travis,J., Bond,V.C. and Genco,C.A.Transposition of the endogenous insertion sequence element IS1126modulates gingipain expression in Porphyromonas gingivalis.Infect. Immun. 67 (10), 5012-5020 (1999)Simpson W, Olczak T, Genco CA.Characterization and expression of HmuR, a TonB-dependent hemoglobin receptor of Porphyromonas gingivalis.J Bacteriol. 2000 Oct;182(20):5737-48.PMID: 11004172Karunakaran,T., Madden,T. and Kuramitsu,H.Isolation and characterization of a hemin-regulated gene, hemR,from Porphyromonas gingivalisJ. Bacteriol. 179 (6), 1898-1908 (1997)","Karunakaran T, Madden T, Kuramitsu H.Isolation and characterization of a hemin-regulated gene, hemR, from Porphyromonas gingivalis.J Bacteriol. 1997 Mar;179(6):1898-908.PMID: 9068634","Wed Jul 9 19:10:06 2008","Wed Jul 9 19:10:06 2008","1","","","PG1552" "PG1359","1631001","1635407","4407","ATGAAGAAAAAAATAATTTATCTGTCGGTAGCCATCTTATTGGTGGCTATCGGCTTTGCATTTTGGATGTTCCGTCCGCAACCCTCGCGTGTGGCATTGGTGAACTTCCCCCAGTTTATGGTGGCACGAATGAGTCTTTCGGCCGATGCACGAAATGTGACAGTAAACGTCGAGGACGACCTCACCAAACTGAAGAAGTACGATGCGGTACTATGCTTCGGCATGGGTGCGAAATGGAACGAAGACGATCGTGCCCAAATCAAAAGTTTGGAGGAAAAACAGATTCCCTATCTCGTGATGTCTGCCACCAATCCGGAGAATGACCTCTGCTCTATCGATAGCACAAAGGCGGAAGTACTCTCCAAATACTTCAGCTACGGAGGTGGCAAGAACTATAGATCGGGATTCAACTACCTGCGTCAGGAGATTCTTGGAAAATCTCTTCGGGAAGGTAAGATCGAGGCACCGATCGAGTATGCCGGCAACCTCTTCTTCGGCAAGACCGATGAGGATATTTTCGAATCCATGGATGCTTATATGCAGTACTATCGTACGCATGGTTATCGCGAGGGTGCTCCACGCGTAGCACTACTGATAGGCTTCGGCAATCCCTTCAACTCGAATCGCGAGCATATAGACGAACTTGTAGCCTCTTTGGAAAAAAGCGGACTCAATGTCTTCCCTTTTTCAGCAGGCAATAAGCGTCTCGAATTCTTGGAACGCATCAACCCCGATCTTCTGATTTATATGCCTCACGGACGTTTGGCGGCAGGCCATTCCACTGAAGCGGAAGCATGGCTGCGCAAGCAAAATGTTCCTATTCTGGCACCTCTTACAATCGGCAATCTTCGAGAGACTTGGTTGGAAGACAAGCAAGGTATGGTAGGCGGCTTCCTGGCACAAAGCGTATCGACTCCCGAGTTGGACGGAGCCATGGTTCCCTTTGCATTGATTGCTCTCGAAAAAGATGCCAAGACAGGGTTACAACTCTTCAGAACCATCCCCGGACGACTGGAGGTATTTACCAGTCTGGTGAACAAATACATCACCCTAAAGAACAAACCTAACAAGGAGAAGCGCGTTGCCATCTACTATTTCAAAGGACCGGGACAAAACAGCCTCGTAGCACAAGGAATAGAGACCCTGCCTTCTATTTATAATGTATTGCGCAAGATGCAGAGCGAAGGCTATGATCTCACCGGATTACCCACCGATGAAGCAGCTTTCGAAAAGATCATCATGACGCAAGGAGCTATTTTCAATAGCTATGCCGAAGGCAATCTGGCACGCTTTACCGAAAGCGGCTATCCTGCATTCGTACCCACAAGTGATTTGAAGCAGTGGATGCAAGAAGTCCTTACACCCAATCAAATTCAACATTTGCAAGAACGCTATGGAGAAGCTCCCGGAGAATACTATTCGATGGAGCAAAACGGAGTAGGCGGCATCGGTGTAACCCGTGTGCAGTTCGGCAATGTCGTTCTTTTGCCTCAGCCCGTACAAGGTGGAGGGGCCAACGACTTCAAGGCCGTACACGGCTCTAATCCGGTACCCCCTTATGCCTATGTAGCCTCATATCTGTGGACACAGAAAGCATTCAAAGCGGATGTGATGATGCACTTCGGCACGCATGGCAGCCTTGAGTTTATCCCGGGCAAGCAGATCGCACTCTCTTCTGAGGATTGGACAGACCGCCTCGTCAATGACCTGCCTCATATCTACTACTATACCATCGCCAATATCGGTGAAGGAATGATCGCCAAGCGCAGAAGCTATGCCGGTACGGTATCTTATCTGGCTCCTCCTTTCATCGAAACGCGCATGAGGGGTCAAGTAAGCGAGTTCCTCAGCTTGACGGATAAATACCTGGAGCAGGACAACGATGATAAAGCCCTGTCTCTCCGCATCAAGGCTTTGGCCGTGAAGAACGGCTACCATCGGGATCTGAAACTCGACTCCATCCTTGACAAACCTTATACACGTGAGCAAATCATCTCTCTTTCCGACTTTGCCGAAGAACTTGCTGTCAGCAAGATCCCGGGTGGTATGTACAAGACAGGCGTTATGTTCCCGGAAGAAAAGATCCGCTCTTCCGTGAAGCATATTGCTACAGATCCTATTGCTTATGCTTTGGCCGCTATCGACCGTCAGCGTGGACGCTACACACAGGAGCAGCAAGATAGCGAACGATTCTTTACCAACCACTATCGTCGTCCTGCCGAAGCACTGGTAGAGCGTTACCTCGGACGCGAGGCGGTAGATGTGAATGCAGCATTGACTACGCTGGGTGTACTGTCCAGCGAAATTGTCCAATCTGAAGCCGTGGTCCGCTCTGCAGAGGATAAAGCATCTTCCATGCGCGAGCAAATGATGGCTGCATCCGGTGGCCGTATGCCTACATCGGCCGAAATGGCGATGATGAGGAAGATGGGCGAGCAGATGAGAGCAAACGGAGGTTCCGGCCCCGACTCGGCTCAAATCGCTGCCATGAAAGCAATGGCGGCAAAGATGAAAGCAAATGGAGGAAAGGGTCCCGACTCGGCTCAAATCGCTGCCATGAAAGCAATGGCCGCCAAGATGAAGAGTGATGGAGCAGAGCACGCAACGCCTTCTCACGGCAAGGATTCTATGCAAGCGGCACATTCGGAAAAGGCAAAAGCTATGATGCCTGATAAGTCGAAAGCCAAGCAACCGGCCATGACGAATCAGCCAGTACGAGAGCTTACCTCCAAAGACAAAGCCATGGCAGCGAGCATCAGCGAACTCAAGCATGCTATTGCCCAGATACCTTTCTACTATAAGGCACTCAAAAACAGCCCACAGCTGGAGCTGACCTCTATGATGAACGCTCTCTCCGGCGGTTATACGGCACCTTCGCCGGGTGGCGACTATATCGCCAATCCGGAGACGCTTCCTACCGGAAGAAACCTCTTCTCTATCAATGCCGAGGCCACACCATCAGCAGCTGCATGGGAAAAAGGGAAGAAGATGGCAGAGGACATGCTGGCCGACTACGCTCGCCGTCACAATGGCGAACTTCCTACGAAAGTCAGCTTTACGCTATGGAGTAGTAGCTTCATCGAAAGCGAAGGTGCTACCATAGCTGAAATACTCTATCTGCTCGGGACGGAGCCCGTACGCGATCCGATGGGACGTGTGCAGGACATCCGACTGATACCGATCGAAAAGCTCGGCCGCAAACGTATCGATGTGGTGGTACAAACGTCCGGACAGCTTCGCGACTTGGCTGCTTCTCGCCTGTTCCTTATCCAAAAAGCTGTGGATCTGGCTGCTGCCCAAAAGTCCGAGAGCGACAACGAAGTTGCTCGTGGTGCAGTAGATGCGGAGAAAGTATTGCTCGGCAAGGGCCTCTCTCCGGCTGATGCACGTATGCTCGCCACGCAGCGTGTATTCGGTGGCGTGAACGGCAACTACGGTACCGGTATCCAATCCATGGTCGAAAGCGGCGATCGCTGGGAAACCGAAAAGGAGATTGCAGATGTTTACCTCAACAACATGGGCGCAATCTACGGTATGCAAGGTCGCTGGGGAGATTTCCAGCAAGGTATGTTCGAAGCAGCTTTGCAGAATGTGGATGCCGTGGTACAACCTCGCCAAAGCAATACGTGGGGAGCCTTGAGCCTCGACCACGTCTATGAATTCATGGGAGGCCTCACGCTCTCTGTCCGCCAAGTGACGGGCAAAGATCCGGAAGCATACTTCAACGACCTGCGCAATCGCCACAAGACGCGCGTGCAAGAGCTGAAACAAGCCATCGGCGTCGAAGCCAGAACCACGATCCTCAATCCTACTTATATCCAAGAGCAGCTCAAAGAGGGACAGAATGCTGCCAACGGCATTGCCGAAACTATCCGCAATACCTACGGCTGGAATGTCATGAAGCCTTCGGCCATCGACAAGGAATTGTGGGATGACATCTACGCTACTTATGTGAAGGATGAGAAGAATCTCGGCGTCCACGAATTTTTCCGCGAAAACAACCCTGCCGCTTTGCAGGAATTCACGGCCGTAATGATGGAGACCGCACGCAAAGGGATGTGGAAAGCTACCCCCGAACAGCTAAAGGCTATTGCCGAATTGCATGCCAAATCCGTGGCTGAATTCGGAGCCGGCTGTAGCGGATTCGTTTGCGACAATGCCAAGCTGCGCAGCTTCATCGGCGAACGCCTCGATGCAAGTGACAAGAAAGTTTACGAAGAAAAGGTAGCCGATGCTCGCGAAGTATCGATCAAGGATGCCAAAAAGGGACGGCGACTCAAGAAAGAGACCCGCTCGAGTGAGGATACCTCCAGCCCTGTCACCTCTTACCTGCTGCCTGCAGGAGTAGCCCTTGTGGTGATAATCCTGATACTCTTCCTCATTGCCAAGCGCAGAAAAGGGAAAGAA","8.40","8.05","162670","MKKKIIYLSVAILLVAIGFAFWMFRPQPSRVALVNFPQFMVARMSLSADARNVTVNVEDDLTKLKKYDAVLCFGMGAKWNEDDRAQIKSLEEKQIPYLVMSATNPENDLCSIDSTKAEVLSKYFSYGGGKNYRSGFNYLRQEILGKSLREGKIEAPIEYAGNLFFGKTDEDIFESMDAYMQYYRTHGYREGAPRVALLIGFGNPFNSNREHIDELVASLEKSGLNVFPFSAGNKRLEFLERINPDLLIYMPHGRLAAGHSTEAEAWLRKQNVPILAPLTIGNLRETWLEDKQGMVGGFLAQSVSTPELDGAMVPFALIALEKDAKTGLQLFRTIPGRLEVFTSLVNKYITLKNKPNKEKRVAIYYFKGPGQNSLVAQGIETLPSIYNVLRKMQSEGYDLTGLPTDEAAFEKIIMTQGAIFNSYAEGNLARFTESGYPAFVPTSDLKQWMQEVLTPNQIQHLQERYGEAPGEYYSMEQNGVGGIGVTRVQFGNVVLLPQPVQGGGANDFKAVHGSNPVPPYAYVASYLWTQKAFKADVMMHFGTHGSLEFIPGKQIALSSEDWTDRLVNDLPHIYYYTIANIGEGMIAKRRSYAGTVSYLAPPFIETRMRGQVSEFLSLTDKYLEQDNDDKALSLRIKALAVKNGYHRDLKLDSILDKPYTREQIISLSDFAEELAVSKIPGGMYKTGVMFPEEKIRSSVKHIATDPIAYALAAIDRQRGRYTQEQQDSERFFTNHYRRPAEALVERYLGREAVDVNAALTTLGVLSSEIVQSEAVVRSAEDKASSMREQMMAASGGRMPTSAEMAMMRKMGEQMRANGGSGPDSAQIAAMKAMAAKMKANGGKGPDSAQIAAMKAMAAKMKSDGAEHATPSHGKDSMQAAHSEKAKAMMPDKSKAKQPAMTNQPVRELTSKDKAMAASISELKHAIAQIPFYYKALKNSPQLELTSMMNALSGGYTAPSPGGDYIANPETLPTGRNLFSINAEATPSAAAWEKGKKMAEDMLADYARRHNGELPTKVSFTLWSSSFIESEGATIAEILYLLGTEPVRDPMGRVQDIRLIPIEKLGRKRIDVVVQTSGQLRDLAASRLFLIQKAVDLAAAQKSESDNEVARGAVDAEKVLLGKGLSPADARMLATQRVFGGVNGNYGTGIQSMVESGDRWETEKEIADVYLNNMGAIYGMQGRWGDFQQGMFEAALQNVDAVVQPRQSNTWGALSLDHVYEFMGGLTLSVRQVTGKDPEAYFNDLRNRHKTRVQELKQAIGVEARTTILNPTYIQEQLKEGQNAANGIAETIRNTYGWNVMKPSAIDKELWDDIYATYVKDEKNLGVHEFFRENNPAALQEFTAVMMETARKGMWKATPEQLKAIAELHAKSVAEFGAGCSGFVCDNAKLRSFIGERLDASDKKVYEEKVADAREVSIKDAKKGRRLKKETRSSEDTSSPVTSYLLPAGVALVVIILILFLIAKRRKGKE","1631001 1635407","Residues 800-900 generally did not match. Although the BLAST search produced several strong hits, each hit contained a variable gap in the middle where no matches were found. This may be due to a variable region in the protein or incorrect orf prediction.TIGR ID: PG1553","magnesium-protoporphyrin O-methyltransferase; cobalamin biosynthesis protein N","Inner membrane, Cytoplasm, Periplasm","Residues 127-818 and 943-1393 have 29% and 35% similarity to AE000899, M.thermautotrophicum cobalamin biosynthesis protein N.Resdiues 152-687 and 943-1368 have 28% and 31% similarity to AF080002, H. mobilis cobalamin biosynthesis protein N.Several strong hits (P < 1e-30) to cobN proteins of other species were found.This sequence is similar to BT0494.","
InterPro
IPR003672
Family
CobN/magnesium chelatase
PF02514\"[195-1298]TCobN-Mg_chel
noIPR
unintegrated
unintegrated
SSF53300\"[152-243]TSSF53300


","BeTs to 4 clades of COG1429COG name: Cobalamin biosynthesis protein CobN and related Mg-chelatasesFunctional Class: HThe phylogenetic pattern of COG1429 is -MT----C--r----------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 943-1337 are 31% similar to a (SUBUNIT CHELATASE PROTEIN MAGNESIUM BIOSYNTHESIS) protein domain (PD001291) which is seen in O27416_METTH.Residues 1110-1367 are 26% similar to a (MAGNESIUM CHELATASE SUBUNIT) protein domain (PD146152) which is seen in O26339_METTH.Residues 127-470 are 27% similar to a (SUBUNIT PROTEIN CHELATASE BIOSYNTHESIS) protein domain (PD002935) which is seen in O27416_METTH.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Tue Dec 2 16:30:10 2003","Fri Mar 9 15:59:07 MST 2001","Tue Dec 2 16:30:10 2003","Fri Feb 16 11:08:55 MST 2001","","Fri Feb 16 11:08:55 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Mar 9 15:59:07 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 195 to 1298 (E-value = 2.1e-137) place PG1359 in the CobN-Mg_chel family which is described as CobN/Magnesium Chelatase (PF02514)","Mon May 14 14:37:17 MDT 2001","34541211","","","","","","1","","","PG1553" "PG1360","1635407","1636081","675","ATGAGAGAAGTCCTGCTGACTATAGCCTTATTGGCTACGCTCAAGTATCTGTTCGAGGAGGGAGTACATAATTCCCTCCTCGTCCGTTGCTTGCATGCGGCGGTCTACGCGGCTTTCATCGCACTCGTACACGGACTGACGCAGCACGTCAGCCGGATGGAAGTCGAGACCCTCCTGTACTCGCCCGAAGCCCTGCGCAATGTCTCTCTGGCCGTCATGGTGGATCTGCTGTACGTCGTATATATATGTACGCACCGGCCCTCCTCCTTCCGCTTGTACCGCACCTGGGTGCGCCATCTGCCCCCGCTCCTGTTCTTCCCCACCCTCTTCTATCTGCGTCTGAGTCTGTTCTACGTCCTGCCGGGTTATTCATTCGTTGGAGTTTCCATCGTGATGGCCCTCATAGTGGCAGCCCTGAGTATAACGGCTCCCTATCTGTGGAGAGCACTCGGACTCAAGCGAGAAGCCTTGCGAGAACCACTTGTTCTACTTTCGCTCTGCACCTTTGTCTTCGTCATTGCAGCCGGAGTATTGCACCCCGACTCCGCGGTGCGAACAGCCGGCATCACTACCGACTGGTGGCAGGCGCTCTATCTCTTCCTGATCGTCTTGGCAGGTGCCTCGATCGGCTATTTTGCCCCTCGCTTGTGGGCTATAATCAGAAGAAAAAACAAC","10.50","9.53","25452","MREVLLTIALLATLKYLFEEGVHNSLLVRCLHAAVYAAFIALVHGLTQHVSRMEVETLLYSPEALRNVSLAVMVDLLYVVYICTHRPSSFRLYRTWVRHLPPLLFFPTLFYLRLSLFYVLPGYSFVGVSIVMALIVAALSITAPYLWRALGLKREALREPLVLLSLCTFVFVIAAGVLHPDSAVRTAGITTDWWQALYLFLIVLAGASIGYFAPRLWAIIRRKNN","1635407 1636081","TIGR ID: PG1554","hypothetical protein","Inner membrane, Cytoplasm","This sequence corresponds to gi:34397528 in Genbank.","
InterPro
IPR006741
Family
Accessory gene regulator B
SM00793\"[34-205]Tno description
noIPR
unintegrated
unintegrated
signalp\"[1-45]?signal-peptide
tmhmm\"[25-43]?\"[100-118]?\"[124-146]?\"[161-179]?\"[193-213]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","Tue Mar 8 11:19:58 2005","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 8 11:19:58 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541212","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Tue Mar 8 11:19:58 2005","","1","","","PG1554" "PG1361","1636154","1636729","576","ATGAACTTCTTGTCCAACGTCATGTTTTGGGTCTCCAACGGCCTGTTGGTACCGGTAGTCGCCGGACTCATCTATCTCTTCATCAAATCCCTTCTCCTCCTCGGCACCCTCTTCGGCACGTGGCAGAGCTACCGCCGCCGGCAGGAGACCTTCGCCTGCATCATCGAAAACAAAGCCGGCCTCGACACCGAAGCCCTCAGAGCCGAAGCGGCCAAACGCCCCCACGCTCCGTTCGAAAATGTGCTGGCCGAAGTCCTCGATGCAGATTCCGCCCGTCGCAATCTGCTCATCGGTCGGTACGAACTCTCTCGTGAACAGCGTCTGAGTTCGGCCAAGGTACTTACCAAGTTCGGCCCGATACTCGGTCTGATGGGTACGCTCATCCCGATGGGCCCGGCCCTTGTCGGACTCTCCACGGGCGACATCGGACAGATGGCCTACAATATGCAAGTAGCCTTTGCCACCACGGTCATCGGTATGTTTGCCTCGGCTGTAGGGTATATAGCCCTGCACATCGTGCGCACTTACAATCGGAACGACCTCGTTTGGCTCGATTACATCAACGAAAAACTCTCC","9.80","3.43","21274","MNFLSNVMFWVSNGLLVPVVAGLIYLFIKSLLLLGTLFGTWQSYRRRQETFACIIENKAGLDTEALRAEAAKRPHAPFENVLAEVLDADSARRNLLIGRYELSREQRLSSAKVLTKFGPILGLMGTLIPMGPALVGLSTGDIGQMAYNMQVAFATTVIGMFASAVGYIALHIVRTYNRNDLVWLDYINEKLS","1636154 1636729 [Shadowed by 1743]","TIGR ID: PG1555","conserved hypothetical protein","Inner membrane, Cytoplasm","Residues 4-89 show 29% similarity to AE000846, M. thermautotrophicus unknown protein.","
InterPro
IPR002898
Family
MotA/TolQ/ExbB proton channel
PF01618\"[57-188]TMotA_ExbB


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 4-189 are 29% similar to a (HYPOTHETICAL 23.8 KD PROTEIN) protein domain (PD114865) which is seen in O26767_METTH.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Feb 22 10:01:32 MST 2001","Thu Feb 22 10:01:32 MST 2001","Thu Feb 22 10:01:32 MST 2001","","Thu Feb 22 10:01:32 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Feb 22 10:01:32 MST 2001","34541213","","","","","","1","","","PG1555" "PG1363","1636738","1637061","324","ATGTCCAGAAGACGCTTCCACGAAGAAGACACGGATCCTTCCTCACTTGTATCCAACCTCTTCGACGTAGCCATGGTCTTTGCCGTGGCACTGATGGTTGCCCTCGTCACCAAATTCAACATGACCGAAGTCTTCAGCAAGGAAGACTACACAATCGTCAAGAATCCCGGCAAGGACAACATGGAAATCTTGATCAAGAAAGGCGACAAGGTGGAGAAGTACACTCCGTCCGACGAATCCTCCGATGGAGCCGGCAGCAAAGGCAAGCGCGTAGGTGTAGCTTACCAGCTCGAAAGCGGCGAAATCATCTACGTGCCGGAAGAC","4.70","-4.76","12026","MSRRRFHEEDTDPSSLVSNLFDVAMVFAVALMVALVTKFNMTEVFSKEDYTIVKNPGKDNMEILIKKGDKVEKYTPSDESSDGAGSKGKRVGVAYQLESGEIIYVPED","1636699 1637061 [Shorter 1743 130 99]","TIGR ID: PG1556","conserved hypothetical protein","Periplasm, Cytoplasm","Residues 7-107 have 37% similarity to AE004618, P. aeruginosa hypothetical protein. ","
noIPR
unintegrated
unintegrated
signalp\"[1-37]?signal-peptide
tmhmm\"[15-35]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 11:50:16 MDT 2001","","Thu Jun 14 11:50:16 MDT 2001","Thu Jun 14 11:50:16 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:50:16 MDT 2001","Thu Jun 14 11:50:16 MDT 2001","","","Mon May 14 14:44:09 MDT 2001","Mon Jun 25 16:00:53 MDT 2001","Thu Feb 22 10:05:15 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon May 14 14:44:09 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jun 25 16:00:53 MDT 2001","34541214","","","","","","1","","","PG1556" "PG1364","1639085","1638000","1086","ATGAAGACAACTCCCTTTACCGATGTGCACATTGCATTAGGAGCAAAGATGCACGAGTTTGCGGGCTACAATATGCCTATCGAATATGGTGGCATTATAGACGAGCACATGAATGTGGTCAACAATGTAGGCGTATTCGACGTATCGCACATGGGCGAATTTTGGGTAAAAGGCCCGAATGCCCTCCGCTTCTTACAGAAAGTGTCCAGCAACGATGCTTCCAAACTGGCAGTCGGTCAAGTTCAGTATTGCTGCTTCCCCAATAACGACGGTGGTATAGTGGACGACTTCCTGCTCTATCGCTACGAAGAGGAAAAATATATGATGGTACCCAACGCTGCCAATATCGCCAAGGACTGGGCCTGGTGCCGGCAGCAGAATACGATGGGAGCCATATTGGAAAATGCCTCGGACAACATCGCCCAACTTGCCGTACAAGGCCCGAAAGCAACGGAAGTGATGCAACGCCTCACGGACATCGACCTGAACGAGATCACTTACTATACGTTCAAAGTAGGCTCTTTCGCCGGATGCCCCGACGTAATTATTTCGGCTACGGGTTATACCGGAGCAGGTGGCTTCGAACTCTATTTCTATCCCCAATACGCTCAGAAGATATGGGATGCCCTCTTCGAAGCCGGCAAGCCCGAAGGTATCAAACCGGCCGGACTCGGTGCTCGCGACACGCTTCGTCTGGAGATGGGTTTCTGTCTCTATGGCAATGATATATGCGACACCACTTCTCCCATAGAGGCTGGGCTGGGCTGGATCACCAAGTTCACCGACGACAAAATGGATATGCCGAGCCGTAAGATCATGGAAGAGCAGAAAGCCGGAGGTCTCAAGCGCAAGCTCGTTGCCTTCGAACTGAAAGACAAGGGTATTCCTCGCCAGCACTATGAAATTGCCAATGCCGAAGGGCAAATCATCGGAGAGGTTACTTCCGGAACGATGTCTCCTTGCCTTAAGAAAGGTATCGGTATGGGCTATGTGGCTACGGAGTTCAGCAAGGTCGGCACAGAGCTTGGCATCATGGTACGCGGTCGTCAACTCAAGGCTGAGATCGTGAAGCCCCCATTCCGCAAA","5.60","-5.11","40053","MKTTPFTDVHIALGAKMHEFAGYNMPIEYGGIIDEHMNVVNNVGVFDVSHMGEFWVKGPNALRFLQKVSSNDASKLAVGQVQYCCFPNNDGGIVDDFLLYRYEEEKYMMVPNAANIAKDWAWCRQQNTMGAILENASDNIAQLAVQGPKATEVMQRLTDIDLNEITYYTFKVGSFAGCPDVIISATGYTGAGGFELYFYPQYAQKIWDALFEAGKPEGIKPAGLGARDTLRLEMGFCLYGNDICDTTSPIEAGLGWITKFTDDKMDMPSRKIMEEQKAGGLKRKLVAFELKDKGIPRQHYEIANAEGQIIGEVTSGTMSPCLKKGIGMGYVATEFSKVGTELGIMVRGRQLKAEIVKPPFRK","1639085 1638000","TIGR ID: PG1559","aminomethyltransferase (glycine cleavage system T protein)","Cytoplasm","Very strong similarity (P < 1e-53)to putative aminotransferases in bacteria.Residues 1-360 have 39% similarity to Z25862, S. tuberosum aminomethyltransferase precursor.Residues 1-360 have 38% similarity to X74793, P. sativum aminomethyltransferase precursor.This sequence is similar to BT4584.","
InterPro
IPR006222
Family
Glycine cleavage T protein (aminomethyl transferase)
PF01571\"[45-257]TGCV_T
InterPro
IPR006223
Family
Glycine cleavage system T protein
TIGR00528\"[1-362]TgcvT
InterPro
IPR013977
Domain
Glycine cleavage T-protein, C-terminal barrel
PF08669\"[265-358]TGCV_T_C
noIPR
unintegrated
unintegrated
PTHR13847\"[1-350]TPTHR13847
PTHR13847:SF5\"[1-350]TPTHR13847:SF5
SSF101790\"[272-362]TSSF101790
SSF103025\"[1-281]TSSF103025


","BeTs to 8 clades of COG0404COG name: Glycine cleavage system T protein (aminomethyltransferase)Functional Class: EThe phylogenetic pattern of COG0404 is ---kyqvcebr----------Number of proteins in this genome belonging to this COG is 1","***** PF01571 (Glycine cleavage T-protein (aminomethyl transferase)) with a combined E-value of 1.1e-98. PF01571A 1-29 PF01571B 40-51 PF01571C 72-121 PF01571D 142-155 PF01571E 183-203 PF01571F 223-258 PF01571G 266-288 PF01571H 307-331 PF01571I 339-362","Residues 45-362 are 42% similar to a (AMINOMETHYLTRANSFERASE TRANSFERASE) protein domain (PD003070) which is seen in GCST_BACSU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon Mar 19 13:59:38 MST 2001","Mon Jan 5 15:10:35 2004","Thu Feb 22 11:25:25 MST 2001","Thu Feb 22 11:25:25 MST 2001","Thu Feb 22 11:25:25 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Mar 19 13:59:38 MST 2001","-60% similar to PDB:1YX2 Crystal Structure of the Probable Aminomethyltransferase from Bacillus subtilis (E_value = 5.6E_79);-60% similar to PDB:1WOO Crystal structure of T-protein of the Glycine Cleavage System (E_value = 4.4E_76);-60% similar to PDB:1WOP Crystal Structure of T-protein of the Glycine Cleavage System (E_value = 4.4E_76);-60% similar to PDB:1WOR Crystal Structure of T-protein of the Glycine Cleavage System (E_value = 4.4E_76);-60% similar to PDB:1WOS Crystal Structure of T-protein of the Glycine Cleavage System (E_value = 4.4E_76);","","","Residues 45 to 362 (E-value = 4.4e-105) place PG1364 in the GCV_T family which is described as Glycine cleavage T-protein (aminomethyl transferase) (PF01571)","Mon Mar 19 13:59:38 MST 2001","34541215","","","","","","1","","","PG1559" "PG1365","1640224","1639163","1062","ATGAACTTCCGACGTCATATTCTCATCACCGGCGGTGCCGGTTTTATCGGATCGCATGTGGTACGACTCATGGTCAATGCTTATCCTGATTATGAGATCATCAATCTCGATACGCTGACATATGCCGGCAATCTGGCCAATCTCAAGGATATAGAGTCCAAGCCGAACTATCGTTTCGTAAAGGCGGATATTTGCAATGCCAATACGCTGAAGAAAGTCTTTGCTCATTATGCCATCGACGGAGTCATTCATCTGGCGGCCGAAAGTCATGTGGATCGGTCTATAAAAGATCCTTTAGCTTTTGCCCGCACCAACGTAATGGGGACGCTGACGCTCCTGCAAACGGCCAAAGAGGCTTGGCATGGGGAATACGAAGGCAAGCGTTTCTACCACATATCGACCGATGAGGTATATGGAGCATTGGCTTTCGACGGTACGCTGTTTACGGAAGAAACCAAATACGACCCACATTCTCCCTATTCGGCCAGCAAGGCTTCCAGCGACCATTTTGTCCGGGCTTATCACGATACTTTCGGTCTGCCGACAGTGATCTCCAACTGCTCGAACAACTATGGGCCCTATCAATTCCCGGAGAAACTCATTCCTCTCTTCATTAACAATATCCGGCACAATAAGCCTCTACCCGTCTATGGGAAAGGGGAGAACGTCCGTGACTGGCTCTATGTCGAAGACCATGCTCGTGCCATCGATCTGATATTCCATCGGGGCAAGAATGGCGATACCTATAATATCGGTGGCTTTAACGAATGGAAGAACATCGATCTCATCAAGGTGATGATCCGCGTGGTGGATCGTCTTTTGGGCAGAGAGGAAGGCTCTTCGGAGAAGCTGATCACCTATGTGGCAGACAGAGCCGGACACGATCTGCGCTATGCCATCGACTCGACTAAGCTGAAAAACGAACTGGGCTGGGAACCCTCTCTCCAATTCGAAGAAGGCATCGAGAAAACCGTCCGCTGGTATCTTCACAATCAAGACTGGCTGGATCGGGTGACCAGCGGCGACTACCTCCGATACTACGACGAGATGTACTCCGAACGA","6.60","-3.46","40708","MNFRRHILITGGAGFIGSHVVRLMVNAYPDYEIINLDTLTYAGNLANLKDIESKPNYRFVKADICNANTLKKVFAHYAIDGVIHLAAESHVDRSIKDPLAFARTNVMGTLTLLQTAKEAWHGEYEGKRFYHISTDEVYGALAFDGTLFTEETKYDPHSPYSASKASSDHFVRAYHDTFGLPTVISNCSNNYGPYQFPEKLIPLFINNIRHNKPLPVYGKGENVRDWLYVEDHARAIDLIFHRGKNGDTYNIGGFNEWKNIDLIKVMIRVVDRLLGREEGSSEKLITYVADRAGHDLRYAIDSTKLKNELGWEPSLQFEEGIEKTVRWYLHNQDWLDRVTSGDYLRYYDEMYSER","1640224 1639163","TIGR ID: PG1560","dTDP-glucose 4,6-dehydratase (dTDP-D-glucose-4,6-dehydratase)","Cytoplasm","Numerous significant hits to dTDP-glucose 4,6-dehydratase and dTDP-D-glucose-4,6-dehydratase in gapped BLAST; e.g. residues 7-354 are 55% similar to gb|AAB86255.1| dTDP-glucose 4,6-dehydratase of Methanothermobacter thermautotrophicus, residues 7-354 are 54% similar to gb|AAG09509.1|AF279618_1 dTDP-D-glucose-4,6-dehydratase of Salmonella enterica, residues 7-354 are 54% similar to gb|AAA53679.1| dTDP-D-glucose 4,6-dehydratase of Shigella flexneri.This sequence is similar to BT0466.","
InterPro
IPR001509
Family
NAD-dependent epimerase/dehydratase
PF01370\"[7-252]TEpimerase
InterPro
IPR002198
Family
Short-chain dehydrogenase/reductase SDR
PS00061\"[147-175]?ADH_SHORT
InterPro
IPR005888
Family
dTDP-glucose 4,6-dehydratase
TIGR01181\"[6-338]TdTDP_gluc_dehyt
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.720\"[4-272]TG3DSA:3.40.50.720
PTHR10366\"[9-343]TPTHR10366
PTHR10366:SF41\"[9-343]TPTHR10366:SF41
SSF51735\"[5-351]TSSF51735


","BeTs to 7 clades of COG1088COG name: dTDP-D-glucose 4,6-dehydrataseFunctional Class: MThe phylogenetic pattern of COG1088 is a-tk---cEbrh---------Number of proteins in this genome belonging to this COG is 1","***** PF01370 (NAD dependent epimerase/dehydratase family) with a combined E-value of 5.8e-72. PF01370A 8-18 PF01370B 54-68 PF01370C 80-114 PF01370D 128-139 PF01370E 219-231 PF01370F 247-256 PF01370G 291-331","Residues 7-331 are 56% similar to a (PROTEIN OXIDOREDUCTASE DEHYDROGENASE REDUCTASE NAD NADP) protein domain (PD000038) which is seen in RFBB_SHIFL.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Feb 21 16:38:22 MST 2001","Tue Dec 2 16:27:50 2003","Wed Feb 21 16:38:22 MST 2001","Wed Feb 21 16:38:22 MST 2001","Wed Feb 21 16:38:22 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 4-327 are 26% similar to PG0319, a predicted NAD-dependent epimerase/dehydratase. Similarities are also seen to PG1318 and PG1134.","Wed Feb 21 16:38:22 MST 2001","Mon May 14 14:55:46 MDT 2001","-68% similar to PDB:1G1A THE CRYSTAL STRUCTURE OF DTDP-D-GLUCOSE 4,6-DEHYDRATASE (RMLB)FROM SALMONELLA ENTERICA SEROVAR TYPHIMURIUM (E_value = 1.5E_108);-68% similar to PDB:1KEU The crystal structure of dTDP-D-glucose 4,6-dehydratase (RmlB) from Salmonella enterica serovar Typhimurium with dTDP-D-glucose bound (E_value = 1.5E_108);-68% similar to PDB:1KEW The crystal structure of dTDP-D-glucose 4,6-dehydratase (RmlB) from Salmonella enterica serovar Typhimurium with thymidine diphosphate bound (E_value = 1.5E_108);-68% similar to PDB:1BXK DTDP-GLUCOSE 4,6-DEHYDRATASE FROM E. COLI (E_value = 1.6E_102);-66% similar to PDB:2HUN Crystal structure of hypothetical protein PH0414 from Pyrococcus horikoshii OT3 (E_value = 1.2E_86);","","","Residues 6 to 329 (E-value = 3.8e-08) place PG1365 in the 3Beta_HSD family which is described as 3-beta hydroxysteroid dehydrogenase/isomerase family (PF01073)Residues 7 to 332 (E-value = 1e-162) place PG1365 in the Epimerase family which is described as NAD dependent epimerase/dehydratase family (PF01370)","Tue Dec 2 16:27:50 2003","34541216","","","","","","1","","","PG1560" "PG1366","1641088","1640234","855","ATGAACCGAATACTGGTAACCGGAGCCGATGGTCAGTTGGGTAGTGAACTTCGGTTGTTGGCTTCGGCTGACAGCCGTTTTGTTTTCACCGACTTAGCGGAACTGGATATTAGAGATAAAGATGCTGTCCTCCGTTTTATGGAGGAATATAGCATCGGGATCATTATCAACTGTGCCGCATATACAGCTGTGGACAAAGCTGAGGACGATGAAGCCTCTGCCGAGAAAGTCAATCACCAAGCTGCGGCTCATCTGGCAGCGGCTGCTGCGAAGTATGATGCCCTGCTGATACATATTTCTACGGATTATGTATTTGATGGTACGGCTAATATCCCCTATAGGGAAGACATCCCGACAGCTCCTCTCGGTGCGTATGGCCGTACCAAGCTAAAAGGAGAACAGGCTGTGCTGGCAGCCGACTGCCGATACATGATACTGCGCACATCGTGGCTGTACTCATCGTTCGGCAATAATTTTGTGAAAACGATGCTTCGGCTGACAGCTGAACGCGATACATTAAACGTAGTCTTCGATCAGGTCGGTACTCCTACCTATGCTGCGGACTTGGCTGCTTTCATACACCGTCTGGCTATAGGACAACTGCCCGTTAAGACGGGGCTGTATCACTTTAGCAACGAAGGTGTATGCTCCTGGTTCGACTTTGCAGTGGCCATTGCCCGAATGAGTGGTCATACAGCATGCAGGATCAGCCCTTGCCATAGCGATGAATATCCGACAAGAGTAAGACGGCCGCATTATTCCGTCTTGGATAAGACGCTTATTAAAAACACTTTCGACATCAGCATCCCTCACTGGCAGGATTCTTTGGCTGCGTGTCTGAATCTGCTAAAACAT","6.20","-4.87","31568","MNRILVTGADGQLGSELRLLASADSRFVFTDLAELDIRDKDAVLRFMEEYSIGIIINCAAYTAVDKAEDDEASAEKVNHQAAAHLAAAAAKYDALLIHISTDYVFDGTANIPYREDIPTAPLGAYGRTKLKGEQAVLAADCRYMILRTSWLYSSFGNNFVKTMLRLTAERDTLNVVFDQVGTPTYAADLAAFIHRLAIGQLPVKTGLYHFSNEGVCSWFDFAVAIARMSGHTACRISPCHSDEYPTRVRRPHYSVLDKTLIKNTFDISIPHWQDSLAACLNLLKH","1641154 1640234 [Bad Olap 1751 67 5]","Shibata et al. (1999) mention four genes in P.gingivalis that contribute to dTDP-L-rhamnose synthesis from D-glucose-1-phosphatewhen placed in E.coli. Other genes deduced from sequence similarity might be PG1091, PG0319, PG1135, PG1931 (none of which qualified as a paralog of PG1366).TIGR ID: PG1561","dTDP-4-keto-L-rhamnose reductase (dTDP-L-rhamnose synthase)","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 1-276 have 42% similarity to AB010415, A. actinomycetemcomitans dTDP-4-keto-L-rhamnose reductase, residues 3-261 have 47% similarity to AF038816, S. marcescens dTDP-L-rhamnose synthase, residues 3-283 have 44% similarity to U51197, Sphingomonas sp. dTDP-L-rhamnose synthase.","
InterPro
IPR005913
Family
dTDP-4-dehydrorhamnose reductase
PF04321\"[3-285]TRmlD_sub_bind
TIGR01214\"[3-283]TrmlD
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.720\"[3-212]TG3DSA:3.40.50.720
PTHR10491\"[1-285]TPTHR10491
SSF51735\"[3-283]TSSF51735


","BeTs to 8 clades of COG1091COG name: dTDP-4-dehydrorhamnose reductaseFunctional Class: MThe phylogenetic pattern of COG1091 is --tk-q-cebr---------xNumber of proteins in this genome belonging to this COG is 1","***** BP02413 (REDUCTASE RHAMNOSE DTDP-4-DEHYDRORHAMNOSE SYNT) with a combined E-value of 1.1e-63. BP02413A 58-101 BP02413B 102-147 BP02413C 157-206 BP02413D 228-248","Residues 26-302 are 42% similar to a (PROTEIN OXIDOREDUCTASE DEHYDROGENASE REDUCTASE NAD NADP) protein domain (PD000038) which is seen in O88084_ENTFA.","","Mon Jun 25 16:04:43 MDT 2001","","Mon Jun 25 16:04:43 MDT 2001","Mon Jun 25 16:04:43 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Mon Jun 25 16:04:43 MDT 2001","Mon Jun 25 16:04:43 MDT 2001","","Mon Jun 25 16:04:43 MDT 2001","Mon Mar 19 14:06:14 MST 2001","Mon Jun 25 16:11:51 MDT 2001","Thu Feb 22 11:48:20 MST 2001","Mon Jun 25 16:04:43 MDT 2001","Mon Jun 25 16:04:43 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Mar 9 16:02:53 MST 2001","-59% similar to PDB:1VL0 Crystal structure of DTDP-4-dehydrorhamnose reductase, rfbD ortholog (CAC2315) from Clostridium acetobutylicum at 2.05 A resolution (E_value = 5.0E_53);-52% similar to PDB:1KBZ Crystal Structure of apo-dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) from Salmonella enterica serovar Typhimurium (E_value = 3.0E_42);-52% similar to PDB:1KC1 Crystal structure of dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) in complex with NADPH (E_value = 3.0E_42);-52% similar to PDB:1KC3 Crystal structure of dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) in complex with NADPH and dTDP-L-rhamnose (E_value = 3.0E_42);-52% similar to PDB:1N2S CRYSTAL STRUCTURE OF DTDP-6-DEOXY-L-LYXO-4-HEXULOSE REDUCTASE (RMLD) IN COMPLEX WITH NADH (E_value = 3.0E_42);","","","Residues 4 to 277 (E-value = 4.3e-06) place PG1366 in the Epimerase family which is described as NAD dependent epimerase/dehydratase family (PF01370)Residues 141 to 276 (E-value = 4.2e-62) place PG1366 in the RmlD_sub_bind family which is described as RmlD substrate binding domain (PF04321)","Mon Jun 25 16:04:43 MDT 2001","34541217","","Shibata Y, Yamashita Y, Nakano Y, Koga T.Isolation and characterization of the rml gene homologs from Porphyromonasgingivalis.Oral Microbiol Immunol. 1999 Dec;14(6):339-47.PMID: 10895688 ","","Thu Jun 14 11:50:39 MDT 2001","","1","","","PG1561" "PG1367","1641675","1641088","588","ATGAACTTTATCCCCACCGAAATACCCGAAGTTGTTATCCTTGAGCCGCGATTGTTCCGTGACGATCGAGGCTATTTCTTCGAATCATTCAGTCGCCAAGAGATAGAAACGGGTATTCGCCCCATTAATTTTGTACAAGACAACGAATCGGCATCCCGATATGGTGTACTAAGAGGGCTTCACTTTCAGAAACCTCCTCATGCCCAGAGCAAGCTGGTACGAGTAGTACGTGGGTGTGTGATTGACTATGCCGTGGATATTCGCTTTGGATCGCCTACTTTCGGCAAATATGTAGCAGTGGAGCTTTCCGATACGAACTTCAGACAGTTGTTTATCCCGCGCGGATTCGCTCACGGTTTTGTCGTGCTAAGTGACGAAGTCGTATTTCAGTACAAATGCGACAACTACTATGCTCCACAAAGCGAAGGAGCCATTGCCTGGAATGATCCGAACTTAGATATTGAGTGGAAAATCCCTGCAGAGGACATTATCCTCTCAGCTAAAGATCAGGCCAATCCGTCATGGACGGAATTGATATCGAGCGAGGATTTCCGGAATCTCTTCCCCTACAATCAAGACTTATACGAA","4.60","-9.37","22683","MNFIPTEIPEVVILEPRLFRDDRGYFFESFSRQEIETGIRPINFVQDNESASRYGVLRGLHFQKPPHAQSKLVRVVRGCVIDYAVDIRFGSPTFGKYVAVELSDTNFRQLFIPRGFAHGFVVLSDEVVFQYKCDNYYAPQSEGAIAWNDPNLDIEWKIPAEDIILSAKDQANPSWTELISSEDFRNLFPYNQDLYE","1641675 1641088 [Shorter 1750 67 94]","TIGR ID: PG1562","dTDP-4-dehydrorhamnose 3,5-epimerase","Cytoplasm","Residues 1-173 have 68% similarity to AF048749, B. fragilis dTDP-6-deoxy-D-glucose-3,5 epimerase.Residues 7-179 have 56% similarity to AP000002, P. horikoshii hypothetical dTDP-4-dehydrorhamnose 3,5-epimerase.Residues 8-183 have 52% similarity to AJ248286, P. abyssi dTDP-6-deoxy-D-glucose-3,5 epimerase.","
InterPro
IPR000888
Family
dTDP-4-dehydrorhamnose 3,5-epimerase related
PD001462\"[1-173]TdTDP_sugar_isom
PF00908\"[3-178]TdTDP_sugar_isom
TIGR01221\"[2-179]TrmlC
InterPro
IPR011051
Domain
Cupin, RmlC-type
SSF51182\"[1-178]TRmlC_like_cupin
InterPro
IPR014710
Domain
RmlC-like jelly roll fold
G3DSA:2.60.120.10\"[1-178]TRmlC-like_jellyroll
noIPR
unintegrated
unintegrated
PTHR21047\"[1-185]TPTHR21047


","BeTs to 6 clades of COG1898COG name: dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymesFunctional Class: MThe phylogenetic pattern of COG1898 is --Tk---Cebr----------Number of proteins in this genome belonging to this COG is 1","***** PF00908 (dTDP-4-dehydrorhamnose 3,5-epimerase) with a combined E-value of 1.4e-66. PF00908A 8-31 PF00908B 44-62 PF00908C 69-102 PF00908D 109-137 PF00908E 163-169","Residues 7-177 are 55% similar to a (5-EPIMERASE DTDP-4-DEHYDRORHAMNOSE) protein domain (PD001462) which is seen in O58153_PYRHO.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon May 14 15:04:08 MDT 2001","Thu Feb 22 12:25:32 MST 2001","Thu Feb 22 12:25:32 MST 2001","Thu Feb 22 12:25:32 MST 2001","Thu Feb 22 12:25:32 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon May 14 15:03:33 MDT 2001","-68% similar to PDB:1DZR RMLC FROM SALMONELLA TYPHIMURIUM (E_value = 2.3E_47);-68% similar to PDB:1DZT RMLC FROM SALMONELLA TYPHIMURIUM (E_value = 2.3E_47);-69% similar to PDB:1RTV RmlC (dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase) crystal structure from Pseudomonas aeruginosa, apo structure (E_value = 3.5E_43);-69% similar to PDB:2IXH RMLC P AERUGINOSA WITH DTDP-RHAMNOSE (E_value = 3.5E_43);-69% similar to PDB:2IXI RMLC P AERUGINOSA WITH DTDP-XYLOSE (E_value = 3.5E_43);","","","Residues 3 to 178 (E-value = 9.9e-93) place PG1367 in the dTDP_sugar_isom family which is described as dTDP-4-dehydrorhamnose 3,5-epimerase (PF00908)","Mon May 14 15:03:33 MDT 2001","34541218","","","","","","1","","","PG1562" "PG1368","1642559","1641693","867","ATGAAAGGAATAATCCTTGCCGGAGGATCCGGCACTCGTCTATATCCGATAACTCGGGGTGTGAGCAAACAGCTTCTACCCGTTTATGACAAGCCGATGATTTACTACCCGCTTTCTACGCTTATGCTTGCGGGTATTCGGGATGTCCTGATCATTTCCACGCCGCAGGACTTATCCATGTTCCAACGGCTATTGGGTGATGGCCGTGATCTCGGTGTCCGGTTGGAGTATGCAGAGCAACCCTCCCCCGATGGATTGGCACAGGCTTTCATCATCGGACGTGAATTTGTAGGAGACGATTGTGCCTGTCTCGTCTTAGGAGATAATATCTTCTACGGGCATGGCTTCAGCCAAATGCTTCGGTCGGCAGTTGCCGATGCGGAAAAGGGTATGGCCACCATTTTCGGCTATTATGTGAATGATCCTGAGCGATACGGTGTAGCGGAAGTGGATGCTACCGGCAAGGTCATCAGCCTGGAAGAAAAACCGGAAAAGCCGAAGAGCAACTACGCAGTAGTGGGACTCTATTTCTATCCCAATGATGTACTTGATGTAGCAGCAGATGTCAAACCATCGGCGCGGGGCGAATTGGAAATAACCTCAGTCAATCAGGAGTTCATGCTTCGCAAGCAGCTCCGTCTCCAGCAACTGGGGCGTGGTTTTGCCTGGCTGGATACAGGTACACACGAATCACTGACAGATGCTTCCGTTTTTGTATCGGTCATAGAGAAACGCCAAGGCTTGAAGATCGCCTGCTTGGAGGAGATTGCCTACAATAATGGCTGGCTCACCAAAGAAGATCTGGCTCGTGTGGCTGAACCGATGAAACAGAATCAATACGGAAAGTATCTGCTTGGACTGATCAAA","5.10","-4.65","31992","MKGIILAGGSGTRLYPITRGVSKQLLPVYDKPMIYYPLSTLMLAGIRDVLIISTPQDLSMFQRLLGDGRDLGVRLEYAEQPSPDGLAQAFIIGREFVGDDCACLVLGDNIFYGHGFSQMLRSAVADAEKGMATIFGYYVNDPERYGVAEVDATGKVISLEEKPEKPKSNYAVVGLYFYPNDVLDVAADVKPSARGELEITSVNQEFMLRKQLRLQQLGRGFAWLDTGTHESLTDASVFVSVIEKRQGLKIACLEEIAYNNGWLTKEDLARVAEPMKQNQYGKYLLGLIK","1642559 1641693","TIGR ID: PG1563","glucose-1-phosphate thymidyltransferase","Cytoplasm","Residues 1-288 have 65% similarity to AF048749, B. fragilis glucose-1-phosphate thymidyl transferase.Residues 1-287 have 62% similarity to AF071085, E. faecalis glucose-1-phosphate thymidyl transferase.Residues 1-289 have 61% similarity to AB010415, A. actinomycetemcomitans glucose-1-phosphate thymidylyltransferase.This sequence is similar to BT0463.","
InterPro
IPR005835
Domain
Nucleotidyl transferase
PF00483\"[2-242]TNTP_transferase
InterPro
IPR005907
Family
Glucose-1-phosphate thymidylyltransferase, long form
TIGR01207\"[2-289]TrmlA
noIPR
unintegrated
unintegrated
G3DSA:3.90.550.10\"[2-289]TG3DSA:3.90.550.10
PTHR22572\"[9-288]TPTHR22572
PTHR22572:SF13\"[9-288]TPTHR22572:SF13
SSF53448\"[1-289]TSSF53448


","BeTs to 8 clades of COG1209COG name: dTDP-glucose pyrophosphorylaseFunctional Class: MThe phylogenetic pattern of COG1209 is a-tk--vcEbr----------Number of proteins in this genome belonging to this COG is 1","***** IPB001825 (ADP-glucose pyrophosphorylase) with a combined E-value of 8.2e-13. IPB001825A 3-21 IPB001825F 137-165 IPB001825H 222-237","Residues 1-123 are 70% similar to a (TRANSFERASE PYROPHOSPHORYLASE PROTEIN BIOSYNTHESIS) protein domain (PD000318) which is seen in RFBA_NEIME.Residues 249-289 are 58% similar to a (TRANSFERASE GLUCOSE-1-PHOSPHATE) protein domain (PD002767) which is seen in O66250_BBBBB.Residues 1-51 are 52% similar to a (PUTATIVE TRANSLATION INITIATION FACTOR) protein domain (PD210496) which is seen in E2BG_CAEEL.Residues 137-248 are 60% similar to a (TRANSFERASE PYROPHOSPHORYLASE NUCLEOTIDYLTRANSFERASE) protein domain (PD000406) which is seen in Q54164_SHIFL.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon May 14 15:09:02 MDT 2001","Tue Dec 2 16:26:25 2003","Thu Feb 22 12:52:44 MST 2001","Thu Feb 22 12:52:44 MST 2001","Thu Feb 22 12:52:44 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon May 14 15:09:02 MDT 2001","-73% similar to PDB:1MC3 CRYSTAL STRUCTURE OF RFFH (E_value = 8.9E_98);-73% similar to PDB:1LVW Crystal structure of glucose-1-phosphate thymidylyltransferase, RmlA, complex with dTDP (E_value = 5.8E_97);-74% similar to PDB:1H5R THYMIDYLYLTRANSFERASE COMPLEXED WITH THIMIDINE AND GLUCOSE-1-PHOSPATE (E_value = 4.9E_96);-74% similar to PDB:1H5S THYMIDYLYLTRANSFERASE COMPLEXED WITH TMP (E_value = 4.9E_96);-74% similar to PDB:1H5T THYMIDYLYLTRANSFERASE COMPLEXED WITH THYMIDYLYLDIPHOSPHATE-GLUCOSE (E_value = 4.9E_96);","","","Residues 2 to 242 (E-value = 3.4e-111) place PG1368 in the NTP_transferase family which is described as Nucleotidyl transferase (PF00483)","Mon May 14 15:09:02 MDT 2001","34541219","","","","","","1","","","PG1563" "PG1369","1644629","1642677","1953","ATGAATATTTGTAAGCGGACGATACGAACGAACAGCTGGTGGGCTTTTGCCTATCGTATGGCATTGGCTTATTTCCTTTTCGGTATTGCCCGTGGACTGTTCTACCTCTTCAACTATCGCTTTTTTGCCGACATGACTGCCGAGCAGGTATGGCGTGCATGGATGGGAGGGCTTAGGTTCGACACGGCTTCCGTTTTGTATTTGAATGCCCTTTTTATTCTGTTGAGCTTTCTGCCGTTCAGGTTTCGTGCCAAGCGATCTTATCGAATCCTGACCGACTGGACCTTTTTCGTGCCAAATGCTTTGGGGCTGGCGGCAGGTCTGGCCGATTGTATTTACTATCCATACACCTTGAAACGAACATCCTCGACGGTTTTCTCTGAATTCAGCCATGAGGGCGGAGGACTGATATGGCATCTTCTCCTGAATTACTGGTATATGAGCCTGCTGGCTATAGTCCTCGTTGCTGCTATGGTATGGCTATATCATCGGGTCAAGCCGGTACGCACCTATGCCGAAGCGAAAGACAGCCTACATTATTATACAGTTCACGTTGTAGCCCTCGTTGCCGCTATTGCATTTATCGTATGGGGTATACGAGGAGGCAGTTTTGCCAAGTCGTGGCGTCCTATGACAATGAGTTATGCCAATCTGTCGGTGGACAAAGTGGAACATAGGGCTTTGGTACTGAACACGCCCTACAGCATCATTCGTACCATTGGCAAACAGGGATTGGAGGAAAAGCGTTTTTATGCCTCCGAAAAGGAGTTGGAGCAAGTATTCAATCCCATTCATCATTTGGCGACGGACACGACAGCTCGTTTCAGTCAGTTGCGTGGACGCAACGTGATGGTGATAATCATCGAAAGCTTTGCTCGCCAATACGTAGGACGGCTGAACCAAGACATTCCCGATTACAAAGGATATACACCCTGCTTCGACTCGATTTCACAAAAGGGTTACCTTTTCGAACAGGCTTTTGCCAACGGGCGCAAGAGTATCGATGCCATGCCGTCCATATTAAGCTCGTTGCCTTCCCTCCGCTCACACTTCATTACATCTCACTATTCGGGCAATGAGATTGAAGGATTGGGGACGGCTCTCGGGCGGATCGGTTATCAATCCATTTTCTTGCATGGTGCACCAAACGGATCAATGGGCTTCGATGCTTTTGTCAAACAAGCCGGCTACAAACGTTATTTCGGCAAGACAGAGTATGCCCACGATGAAGATTTCGATGGCGTATGGGGCATCTGGGACGAGCCGTTCTTACTACATGCCGTGGACGAACTCAGCCGTATGAAACAACCTTTCGTAGGTACGCTGTTCACGCTTTCCAGTCATGAGCCTTTCCATATTCCAAGCCATCGCGAAGGTCTTTTTCCCAACGAAGGCGAACCGCTGGTGCAGTGCATTGGATACACGGATCATGCTTTGGGAGAATTTTTCCGGAAAGCAAGCCGGCAAACCTGGTTTGAAAATACGCTCTTCGTTATCACAGCCGACCATGCTTCCGGAGATCTCCGTCCTGAGTACAGAAGTGCCGTTGGACGCTATGCCATACCCATTTTATTCTATGCTCCGGGATCCGATTTGATAGGATTTGACAGGACAACTACCGTACAACAGGCTGATATTCTTCCGACAGTGCTAAGCCTTTTGGGCTATTCTGCTCCTGTTCTGGCTTTCGGGAACAACATGTTTAGCCGGCAAGCTCCGCATTTTGCCGTCACCGATTACGACGGTACGCTTCAGTTACTGGAGGATGGCCTCGTCCTGCAGCACGATGGCAATCATCCTCTTGCTTTGTACGACTATCTTAATGATAAAGAGCTTCGTACAAATCTGATCAAAACGCAAGCTGCACGAGCTGACAGTATGACATGCCGAATAGAAGCAGTGATCCAGTCTTTCAATCACCGAATGAATACAAACAGACTCGTTGCCGATAAA","8.60","9.09","74216","MNICKRTIRTNSWWAFAYRMALAYFLFGIARGLFYLFNYRFFADMTAEQVWRAWMGGLRFDTASVLYLNALFILLSFLPFRFRAKRSYRILTDWTFFVPNALGLAAGLADCIYYPYTLKRTSSTVFSEFSHEGGGLIWHLLLNYWYMSLLAIVLVAAMVWLYHRVKPVRTYAEAKDSLHYYTVHVVALVAAIAFIVWGIRGGSFAKSWRPMTMSYANLSVDKVEHRALVLNTPYSIIRTIGKQGLEEKRFYASEKELEQVFNPIHHLATDTTARFSQLRGRNVMVIIIESFARQYVGRLNQDIPDYKGYTPCFDSISQKGYLFEQAFANGRKSIDAMPSILSSLPSLRSHFITSHYSGNEIEGLGTALGRIGYQSIFLHGAPNGSMGFDAFVKQAGYKRYFGKTEYAHDEDFDGVWGIWDEPFLLHAVDELSRMKQPFVGTLFTLSSHEPFHIPSHREGLFPNEGEPLVQCIGYTDHALGEFFRKASRQTWFENTLFVITADHASGDLRPEYRSAVGRYAIPILFYAPGSDLIGFDRTTTVQQADILPTVLSLLGYSAPVLAFGNNMFSRQAPHFAVTDYDGTLQLLEDGLVLQHDGNHPLALYDYLNDKELRTNLIKTQAARADSMTCRIEAVIQSFNHRMNTNRLVADK","1644707 1642677","TIGR ID: PG1564","dTDP-4-dehydrorhamnose 3,5-epimerase","Inner membrane, Cytoplasm","Residues 7-555 have 25% similarity to AE004596, P. aeruginosa conserved hypothetical protein. Residues 289-637 have 25% similarity to AF143948 hypothetical integral membrane protein, P. aeruginosa. Residues 144-588 have 22% similarity to U32804 hypothetical protein, Haemophilus influenzae.This sequence is similar to BT0873.","
InterPro
IPR000917
Domain
Sulfatase
PF00884\"[279-615]TSulfatase
InterPro
IPR001952
Family
Alkaline phosphatase
G3DSA:3.40.720.10\"[279-560]TAlk_phosphtse
InterPro
IPR012160
Family
Membrane sulphatase, HI1246-related
PIRSF005091\"[15-624]TMmb_sulf_HI1246
noIPR
unintegrated
unintegrated
PTHR10342\"[471-559]TPTHR10342
PTHR10342:SF16\"[471-559]TPTHR10342:SF16
SSF53649\"[279-640]TSSF53649


","BeTs to 4 clades of COG1368COG name: Phosphoglycerol transferase MdoB and related proteins, alkaline phosphatase superfamilyFunctional Class: MThe phylogenetic pattern of COG1368 is ------v-eB-Huj-------Number of proteins in this genome belonging to this COG is 2","***** IPB000917 (Sulfatase) with a combined E-value of 2.9e-06. IPB000917E 475-504 IPB000917G 544-555","Residues 277-503 are 25% similar to a (TRANSMEMBRANE PHOSPHOGLYCEROL TRANSFERASE) protein domain (PD126137) which is seen in YC46_HAEIN.","","Thu Jun 14 11:51:05 MDT 2001","","Thu Jun 14 11:51:05 MDT 2001","Thu Jun 14 11:51:05 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:51:05 MDT 2001","Thu Jun 14 11:51:05 MDT 2001","","","Tue Jul 29 17:45:42 2008","Wed Dec 3 09:44:57 2003","Thu Feb 22 12:58:48 MST 2001","Mon Jun 25 16:03:54 MDT 2001","Mon Jun 25 16:03:54 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 22-637 are 24% similar to PG1765, a conserved hypothetical protein.","Mon Jun 25 16:03:54 MDT 2001","Tue Jul 29 17:45:42 2008","No significant hits to the PDB database (E-value < E-10).","","","Residues 279 to 617 (E-value = 1.1e-17) place PG1369 in the Sulfatase family which is described as Sulfatase (PF00884)","Mon Jun 25 16:03:54 MDT 2001","34541220","","","","","","1","","","PG1564" "PG1370","1645952","1644717","1236","ATGCGATTCCTTTTCAGCCTGATCGGATTGGTCTATTCTTCGCTGATCAAACTTGCCGTTCCGTTCAATCCCAAAGCCCGCATGATGGTTCGTGGGCGATGGAAGGTGTGGCGTCAGCTGCGTGAGGGCATAGTGCCGGGCGGGCGCTATATATGGTTTCATGCAGCTTCTTTGGGCGAATTCGAGCAGGGGAGACCGATGATAGAACGCATCCGAAGCGAATATCCGGACTATAGGATCGTGCTTACCTTCTTCAGCCCCTCGGGATATGAGGTACGTAAGAATTACGAAGGTGCCGACGTGATCGTGTATTTGCCGGCAGATCGTTTGCCCCGAGTGCGTAAGTTTCTGGATCTGGTCAAGCCTGAGATGGCTATTTTCATCAAATACGACTTCTGGCCCTGTTTCCTGACAGAATTGGAGCGTAGGCAGATACCTACCTATCTGGTTTCATCCATCTTCCGACCGTCACAGCTGTTTTTCCGCTGGTATGGAGGAGCATACAAACGTTTGCTACACTGCTTTACACACATTTTTGTTCAGGACAAGGCTTCACGCCTGCTACTTGAAAAGCATGGGATAGACCATGTATCCGTAGCGGGAGATACGCGCTTCGACCGGGTGATCTCCGTATATGAAGCTCGGAAATCGCTTCCGCTGATAGAGCGTTTTGCTGCTTCCGTGCCGGAAGACGGTTTGGTCATTGTGGGCGGTAGCAGTTGGCCTCCCGACGAAGAGATACTCGTACGCTACTTCAATCGAAATCCCAAGATCAAACTCATATTGGCACCGCACGAAATCGACAAGGAACATTTGCTTCAGATCATATCGCATATACGACGGCCTTTCATACGACTTTCGGAAGCTACGGAAAGCGATATTGCCCGGCAGGATTGTCTGATTGTAGACAGCTTCGGTCTCCTATCCTCCATTTATCGCTACGGTCAAGTAGCTTTTATCGGAGGAGGATTCGGCAAAGGCATTCACAATACACCCGAGGCCGCAGTCTATGGTATACCGGTTATTTTCGGACCACGATATGAGAAATTCAAGGAAGCCCGTGAATTGATAGATGTCGGCGGAGGCTTCTCCGTATCCTCAGCAGAGGAATTTGGCAACCTGATCAAGCGAATACAAACGGACAAGGCCTATAGGGACGCCGCATCCCGCGCAGCAGCAGACTACATCAGATCCAATGCCGGTGCAACGGGATACATCGTGCACCGAATCATGAAA","10.40","16.29","47330","MRFLFSLIGLVYSSLIKLAVPFNPKARMMVRGRWKVWRQLREGIVPGGRYIWFHAASLGEFEQGRPMIERIRSEYPDYRIVLTFFSPSGYEVRKNYEGADVIVYLPADRLPRVRKFLDLVKPEMAIFIKYDFWPCFLTELERRQIPTYLVSSIFRPSQLFFRWYGGAYKRLLHCFTHIFVQDKASRLLLEKHGIDHVSVAGDTRFDRVISVYEARKSLPLIERFAASVPEDGLVIVGGSSWPPDEEILVRYFNRNPKIKLILAPHEIDKEHLLQIISHIRRPFIRLSEATESDIARQDCLIVDSFGLLSSIYRYGQVAFIGGGFGKGIHNTPEAAVYGIPVIFGPRYEKFKEARELIDVGGGFSVSSAEEFGNLIKRIQTDKAYRDAASRAAADYIRSNAGATGYIVHRIMK","1645952 1644717","TIGR ID: PG1565","3-deoxy-D-manno-2-octulosonic acid (Kdo transferase)","Inner membrane, Cytoplasm, Periplasm","This sequence is orthologous to CT208 and BT2747.Numerous significant hits to 3-deoxy-D-manno-octulosonic-acid transferase (kdo transferase) in gapped BLAST; e.g. residues 7-402 are 26% similar to gb|AAC76657.1| 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase) of Escherichia coli K12, residues 44-402 are 26% similar to gb|AAC44432.1| 3-deoxy-manno-octulosonic acid transferase of Serratia marcescens, residues 51-370 are 27% similar to gb|AAC06622.1| 3-deoxy-D-manno-2-octulosonic acid transferase of Aquifex aeolicus.","
InterPro
IPR007507
Domain
Three-deoxy-D-manno-octulosonic-acid transferase, N-terminal
PF04413\"[30-209]TGlycos_transf_N
noIPR
unintegrated
unintegrated
PTHR23417\"[24-412]TPTHR23417
PTHR23417:SF2\"[24-412]TPTHR23417:SF2
SSF53756\"[49-400]TSSF53756


","BeTs to 5 clades of COG1519COG name: 3-Deoxy-D-manno-octulosonic-acid transferase (LPS biosynthesis)Functional Class: MThe phylogenetic pattern of COG1519 is -----q--e--huj----inxNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 41-380 are 26% similar to a (TRANSFERASE) protein domain (PD004171) which is seen in KDTA_ECOLI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Apr 17 13:02:55 MDT 2001","Fri Dec 19 09:56:16 2003","Mon Mar 19 14:34:27 MST 2001","","Mon Mar 19 14:34:27 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Mar 19 14:34:27 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 30 to 217 (E-value = 1.2e-20) place PG1370 in the Glycos_transf_N family which is described as 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) (PF04413)","Mon Mar 19 14:34:27 MST 2001","34541221","","","Clementz,T. and Raetz,C.R. 1991. A gene coding for KDO transferase in Escherichia coli: Identification, mapping, cloning, and sequencing. J. Biol. Chem. 266: 9687-9696. PubMed: 2033061.","","Mon Mar 19 14:34:27 MST 2001","1","","","PG1565" "PG1371","1647494","1645980","1515","ATGATCAACAGACGCATACGCGTACGTTTCGCTCCGAGTCCTACCGGACCGTTGCATATAGGAGGGGTACGTACGGCTCTATACAACTATCTTTTCGCCCGTCAGCATGGAGGTGATATGATCCTGCGCATCGAGGATACGGACAGCAACAGATTTGTGCCCGGTGCCGAAGCGTATATAATAGAGGCATTGGAATGGCTCGGCATCAAATTCGATGAAGGTGTAGGCTATGGTGGCCGATTTGGCCCTTACAGGCAGAGCGAAAGGCGCGATATTTATCGCACATATGTTCGCCAACTACTGGATTCGGGACGGGCATATATCGCCTTCGATACGCCGGAGGAACTGGAAGCTCGGCGAGCCGAGGTGCCCAACTTCCAATACGATGCCACTACTCGTGGGCAAATGCGCAACTCTCTGACACTGCCTGCCGAAGAAGTGGAGCGTCTCGTTGCCGAGGGGACGCAGTATGTGGTTCGTTTCCTCGTGGAGCCGAATTTGGACGTAGAAGTGAACGACCTGATTCGCGGACGAGTGGTGATCAACTCTTCCATCCTCGATGACAAGGTGCTGTATAAAAGTGCCGACGACTTGCCCACCTACCATCTGGCCAATATCGTGGACGACCATCTGATGGAAGTGAGCCATGTGATACGTGGTGAGGAGTGGTTGCCCAGTGCACCACTTCATGTACTGCTCTATCGTGCTTTCGGTTGGGAAGATACGATGCCGAGATTTGCCCATTTGGCACTGCTGCTGAAGCCCGAAGGAAACGGTAAGCTGAGCAAACGCGATGGCGATCGTTTGGGATTTCCCGTATTTCCGCTGGAGTGGAAAGATCCCCAAACGGGAGATATATCCAAAGGTTATCGTGAAAGCGGTTATCTGCCCGAAGCAGTGGTAAACTTCCTCGCGCTTCTGGGCTGGAATCCGGGCAATGATCAGGATGTCATGAGCATGGACGAATTGATCCGACTGTTCGACATCGAAAAATGCAGCAAGGCCGGAGCCAAGTTCGACTACGAGAAAGGACGCTGGTTCAATCACCAATATATCCAGCGTAAGGACAATGCGGAGTTGGCCGAACTCTTCCGTCCCATCCTTCGCGAAAATGGAGTAGTGGCTACCGACGAGAAAACAGCTCATGTAATCTCCCTCGTCAAGGAACGTGTAAACTTTATCGGAGAGCTATGGGAGCAAGCCGGATTCTTCTTCATCGCACCGCTATCCTATGATGAAAAAACAGTGAAAAAACGCTGGAAAGAAGATACGGCCAAGCAGTTGGGCGAACTAGCCGAATTGCTGGACTCTCACCGATCGTTTGCAGCCGAAGCAACCGAACCCACTGTGAAGAATTGGATCGAGACCAATGGCTATCACCTCGGCAATATCATGAATGCCACTCGGTTGGCACTCGTGGGCGAGAGCAAGGGACCTCATATCTTCGACATCATGGAAGTGCTCGGGCGTGAAGAGACCGTTGGACGCATACGTCGTGCCATCGAAGTCTTAGGC","5.50","-11.09","57680","MINRRIRVRFAPSPTGPLHIGGVRTALYNYLFARQHGGDMILRIEDTDSNRFVPGAEAYIIEALEWLGIKFDEGVGYGGRFGPYRQSERRDIYRTYVRQLLDSGRAYIAFDTPEELEARRAEVPNFQYDATTRGQMRNSLTLPAEEVERLVAEGTQYVVRFLVEPNLDVEVNDLIRGRVVINSSILDDKVLYKSADDLPTYHLANIVDDHLMEVSHVIRGEEWLPSAPLHVLLYRAFGWEDTMPRFAHLALLLKPEGNGKLSKRDGDRLGFPVFPLEWKDPQTGDISKGYRESGYLPEAVVNFLALLGWNPGNDQDVMSMDELIRLFDIEKCSKAGAKFDYEKGRWFNHQYIQRKDNAELAELFRPILRENGVVATDEKTAHVISLVKERVNFIGELWEQAGFFFIAPLSYDEKTVKKRWKEDTAKQLGELAELLDSHRSFAAEATEPTVKNWIETNGYHLGNIMNATRLALVGESKGPHIFDIMEVLGREETVGRIRRAIEVLG","1647692 1645980","TIGR ID: PG1566","glutamyl-tRNA synthetase (glutamate--tRNA ligase)","Cytoplasm","Numerous significant hits to glutamyl-tRNA synthetase (glutamate--tRNA ligase) in gapped BLAST; e.g. residues 6-502 are 39% similar to gb|AAA22494.1| transfer RNA-Gln synthetase of Bacillus stearothermophilus, residues 9-501 are 40% similar to emb|CAA45854.1| glutamate--tRNA ligase of Thermus thermophilus, residues 7-504 are 37% similar to gb|AAC66742.1| glutamyl-tRNA synthetase of Borrelia burgdorferi.This sequence is similar to BT2748.","
InterPro
IPR000924
Family
Glutamyl-tRNA synthetase, class Ic
PR00987\"[9-21]T\"[23-34]T\"[38-51]T\"[199-209]T\"[215-223]TTRNASYNTHGLU
PTHR10119\"[9-269]T\"[287-505]TGlu_tRNA-synt_1c
PF00749\"[5-346]TtRNA-synt_1c
InterPro
IPR001412
Family
Aminoacyl-tRNA synthetase, class I
PS00178\"[12-23]TAA_TRNA_LIGASE_I
InterPro
IPR004527
Family
Glutamyl-tRNA synthetase bacterial/mitochondrial
TIGR00464\"[5-504]TgltX_bact
InterPro
IPR008925
Domain
Class I aminoacyl-tRNA synthetase, anticodon-binding
G3DSA:1.10.10.350\"[405-502]TtRNA_synt_bd
SSF48163\"[320-501]TtRNA-synt_bind
InterPro
IPR014729
Domain
Rossmann-like alpha/beta/alpha sandwich fold
G3DSA:3.40.50.620\"[5-253]TRossmann-like_a/b/a_fold
noIPR
unintegrated
unintegrated
G3DSA:1.10.1160.10\"[255-356]TG3DSA:1.10.1160.10
PTHR10119:SF1\"[9-269]T\"[287-505]TPTHR10119:SF1
SSF52374\"[5-339]TSSF52374


","BeTs to 17 clades of COG0008COG name: Glutamyl- and glutaminyl-tRNA synthetasesFunctional Class: JThe phylogenetic pattern of COG0008 is amtkYqVcEbrHUJgpolinXNumber of proteins in this genome belonging to this COG is 2","***** PR00987 (Glutamyl-tRNA synthetase signature) with a combined E-value of 1.5e-34. PR00987A 9-21 PR00987B 23-34 PR00987C 38-51 PR00987D 199-209 PR00987E 215-223","Residues 6-340 are 48% similar to a (SYNTHETASE GLUTAMYL-TRNA PROTEIN) protein domain (PD001595) which is seen in SYE_BACST.Residues 383-504 are 25% similar to a (SYNTHETASE AMINOACYL-TRNA GLUTAMYL-TRNA) protein domain (PD002794) which is seen in SYE_BORBU.","","Thu Jun 14 11:51:30 MDT 2001","","Thu Jun 14 11:51:30 MDT 2001","Thu Jun 14 11:51:30 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:51:30 MDT 2001","Thu Jun 14 11:51:30 MDT 2001","","","Mon Mar 19 14:55:55 MST 2001","Fri Dec 19 09:57:54 2003","Thu Mar 15 14:24:33 MST 2001","Mon Jun 25 16:15:03 MDT 2001","Mon Jun 25 16:15:03 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 5-309 show 25% similarity to PG1704, glutamyl-tRNA synthetase.","Mon Jun 25 16:15:03 MDT 2001","Thu Mar 15 14:24:33 MST 2001","-56% similar to PDB:1J09 Crystal structure of Thermus thermophilus glutamyl-tRNA synthetase complexed with ATP and Glu (E_value = 3.5E_93);-56% similar to PDB:1N75 Crystal structure of Thermus thermophilus glutamyl-tRNA synthetase complexed with ATP. (E_value = 3.5E_93);-56% similar to PDB:1N77 Crystal structure of Thermus thermophilus glutamyl-tRNA synthetase complexed with tRNA(Glu) and ATP. (E_value = 3.5E_93);-56% similar to PDB:1N78 Crystal structure of Thermus thermophilus glutamyl-tRNA synthetase complexed with tRNA(Glu) and glutamol-AMP. (E_value = 3.5E_93);-56% similar to PDB:2CUZ Glutamyl-tRNA synthetase from Thermus thermophilus in complex with L-glutamate (E_value = 3.5E_93);","","","Residues 5 to 346 (E-value = 4e-120) place PG1371 in the tRNA-synt_1c family which is described as tRNA synthetases class I (E and Q), catalytic domain (PF00749)","Mon Jun 25 16:15:03 MDT 2001","34541222","","","Breton,R., Watson,D., Yaguchi,M. and Lapointe,J. 1990. Glutamyl-tRNA synthetases of Bacillus subtilis 168T and of Bacillus stearothermophilus. Cloning and sequencing of the gltX genes and comparison with other aminoacyl-tRNA synthetases. J. Biol. Chem. 265 (30): 18248-18255. PubMed: 2120226.","","Mon Mar 19 14:55:55 MST 2001","1","","","PG1566" "PG1372","1648505","1648678","174","TTGCATGCTATAGACAGCAGAGTAAAAGAGAATAGGATTCATTTATATGATGTAAAAAAGGATTGGTTTTATGATGATATTCTTGTCTTCGGAAAGACAAAAATTCAAAAACCAATCCTTCTTAATAGAGAAAGAGTTGTAACGGTCGAAGTCTTTCTCAGACTTCGTTATCAC","10.50","4.70","7121","LHAIDSRVKENRIHLYDVKKDWFYDDILVFGKTKIQKPILLNRERVVTVEVFLRLRYH","1649058 1648678","TIGR ID: PG1569TIGR ID: PG1570","hypothetical protein","Cytoplasm, Outer membrane","No significant hits found using gapped BLAST search.","No hits reported.","BeTs to 12 clades of COG0607COG name: Rhodanese-related sulfurtransferasesFunctional Class: PThe phylogenetic pattern of COG0607 is amT-YQ-CEBRHuj--o---xNumber of proteins in this genome belonging to this COG is 3","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 11:52:09 MDT 2001","","Thu Jun 14 11:52:09 MDT 2001","Thu Jun 14 11:52:09 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:52:09 MDT 2001","Thu Jun 14 11:52:09 MDT 2001","","","Thu Feb 22 13:04:57 MST 2001","Thu Feb 22 13:04:57 MST 2001","Thu Feb 22 13:04:57 MST 2001","","Thu Feb 22 13:04:57 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No significant paralogs found using local BLAST search.","Thu Feb 22 13:04:57 MST 2001","Thu Jun 14 11:52:09 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Jun 14 11:52:09 MDT 2001","34541223","","","","","","1","","","PG1570" "PG1373","1650446","1649034","1413","ATGAAAGTAGAACAGATTTACACAGGCTGCTTAGCCCAGGGTGCATACTACATCACTTCGATGGGAGAGGCTGCCATCATCGACCCACTGCGTGAAATCACGCCCTACCTCGAACGTCTCAAACGCGACGGGGTAAAGCTCAAATACATATTGGAGACGCATTTCCATGCCGACTTTGTGAGCGGACACCTTGATCTGAGCCGTGCCACAGGTGCTCCCATTGTTTATGGACCTACGGCTAAGCCCGGATTCGATGCGATAGTAGCTGAGGATAATCAGATCTTCGAGTTGGGTAATGTAAAGATCCGAGTGCTTCATACACCCGGACATACGATGGAAAGCTCTTGCTTCCTGCTTATCGACGAAAACGGACGCGAGGCGGCTCTCTTCAGTGGCGACACACTCTTCCTGGGGGATGTCGGCCGTCCTGACCTGGCGCAGAAAGCAGCAAACTTGACACAGGAAGAGCTGGCCGGCCTGCTCTATGATAGTCTCTACACCAAGATCCTCCCCTTGTCGGACGACATCATCGTATATCCGGCTCACGGTGCCGGATCGGCCTGCGGCAAGAATATGATGCAGGAGACAGTGGACAGTCTTGGCAACCAAAAGCGCGTTAATTACGCTCTTAATCAACCGGGCAAGGAAGCGTTTATAGCATCTGTGATAGAGGGCTTGCTGCCACCGCCGGCATATTTCGGGGGCAATGTAGCCATGAACAAGATGGGATATGACAGCATCGACAACGTGATGGAGCGCGGACTCTCCGCCCTCTCGGCCACGGACTTCGAAGCGATAGCCAAAACGTCCGATGCTCTGGTGCTCGATACGAGAGCTCCCGGTGTGTTCGCCCAAGGCTTCATTCCTCGCTCGATCAACATCGGTTTGGATGGGGATTTCGCCCCTTGGGTCGGTACGATGATCGTAGACGTGAAGCAACCTCTGTTGCTTGTGGCAGATCCGGGACGTGAGCAGGAAGTGATCACAAGGCTCAGCCGTGTAGGATTCGATCAGGTACTGGGCTATTTGGATGGCGGATTCGATACATGGAATGCCTCGGGTAAAGAAATCGACCACGTCGAATGCATTACGGCCAACGAATTTGCCGAACGATTCTGCCCTGAAGAGAGTCTCGTGTTCGATGTGCGCAAGGAGAGCGAATACGCAGCTGAGCACGTGGAAGGAGCTTATAGCCGTCCGCTCGCCTATATCAATGACTGGATACAGGATATTCCCCGAGACCGCCACTTCTATCTGCATTGTATAGGTGGATACCGCAGTATGATTGCATCCAGCATCCTACTCTCGCGAGGCTATCGTAATTTCACGGACATCGAAGGCGGATTCGCAAGCATTGCGCAGACCGGTGTTCCCAAAACGGACTATGTATGTCAAAGCAAAGTGTCAAAAAAA","4.80","-18.88","51627","MKVEQIYTGCLAQGAYYITSMGEAAIIDPLREITPYLERLKRDGVKLKYILETHFHADFVSGHLDLSRATGAPIVYGPTAKPGFDAIVAEDNQIFELGNVKIRVLHTPGHTMESSCFLLIDENGREAALFSGDTLFLGDVGRPDLAQKAANLTQEELAGLLYDSLYTKILPLSDDIIVYPAHGAGSACGKNMMQETVDSLGNQKRVNYALNQPGKEAFIASVIEGLLPPPAYFGGNVAMNKMGYDSIDNVMERGLSALSATDFEAIAKTSDALVLDTRAPGVFAQGFIPRSINIGLDGDFAPWVGTMIVDVKQPLLLVADPGREQEVITRLSRVGFDQVLGYLDGGFDTWNASGKEIDHVECITANEFAERFCPEESLVFDVRKESEYAAEHVEGAYSRPLAYINDWIQDIPRDRHFYLHCIGGYRSMIASSILLSRGYRNFTDIEGGFASIAQTGVPKTDYVCQSKVSKK","1650446 1649034","TIGR ID: PG1571","conserved hypothetical protein","Cytoplasm","Residues 1-452 have 30% similarity to AB033763, S. aureus hypothetical protein.Residues 1-449 have 31% similarity to AE001863, D. radiodurans conserved hypothetical protein.Residues 3-458 have 30% similarity to AL133424, S. coelicolor hypothetical protein SCF56.02.","
InterPro
IPR001279
Domain
Beta-lactamase-like
PF00753\"[12-182]TLactamase_B
InterPro
IPR001763
Domain
Rhodanese-like
SM00450\"[258-356]T\"[363-458]TRHOD
PS50206\"[268-359]T\"[373-461]TRHODANESE_3
noIPR
unintegrated
unintegrated
G3DSA:3.40.250.10\"[252-352]T\"[357-464]TG3DSA:3.40.250.10
G3DSA:3.60.15.10\"[2-210]TG3DSA:3.60.15.10
PTHR11935\"[84-259]TPTHR11935
PTHR11935:SF9\"[84-259]TPTHR11935:SF9
SSF52821\"[249-357]T\"[357-464]TSSF52821
SSF56281\"[1-248]TSSF56281


","BeTs to 11 clades of COG0491COG name: Zn-dependent hydrolases, including glyoxylasesFunctional Class: RThe phylogenetic pattern of COG0491 is AMtKYQVCEBRHuj-------Number of proteins in this genome belonging to this COG is 2","***** BP01940 (PROTEIN HYDROLASE II GLYOXALA) with a combined E-value of 3.4e-11. BP01940A 47-58 BP01940B 107-117 BP01940C 129-142","Residues 102-182 are 41% similar to a (PROTEIN HYDROLASE GLYOXALASE II HYDROXYACYLGLUTATHIONE) protein domain (PD001940) which is seen in YRKH_BACSU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Feb 22 13:20:17 MST 2001","Thu Feb 22 13:20:17 MST 2001","Thu Feb 22 13:20:17 MST 2001","Thu Feb 22 13:20:17 MST 2001","Thu Feb 22 13:20:17 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 2-186 show 28% similarity to PG1147, conserved hypothetical protein (probable hydrolase). Residues 374-460 show 32% similarity to PG0160, NADH oxidase/peroxidase.","Thu Mar 15 14:31:13 MST 2001","Thu Mar 15 14:31:13 MST 2001","-43% similar to PDB:1XM8 X-RAY STRUCTURE OF GLYOXALASE II FROM ARABIDOPSIS THALIANA GENE AT2G31350 (E_value = 2.4E_11);-49% similar to PDB:2GCU X-Ray Structure of Gene Product from Arabidopsis Thaliana At1g53580 (E_value = 5.3E_11);-52% similar to PDB:1QH3 HUMAN GLYOXALASE II WITH CACODYLATE AND ACETATE IONS PRESENT IN THE ACTIVE SITE (E_value = 3.4E_10);-52% similar to PDB:1QH5 HUMAN GLYOXALASE II WITH S-(N-HYDROXY-N-BROMOPHENYLCARBAMOYL)GLUTATHIONE (E_value = 3.4E_10);","","","Residues 12 to 182 (E-value = 4.8e-22) place PG1373 in the Lactamase_B family which is described as Metallo-beta-lactamase superfamily (PF00753)","Thu Mar 15 14:31:13 MST 2001","34541224","","","","","","1","","","PG1571" "PG1374","1651345","1650542","804","ATGCTTATAGCAGGTTACTTGGCATCTATTTTAATCGGCCTGTCACTCGGCCTTATCGGTGGCGGAGGGAGTATCCTCACCGTTCCCGTACTCGTATATCTGATGGGCATAGACCCTGTCTTGGGCACGGCCTATTCGCTTTTTATCGTGGGAGCTACCAGTGTGGTCGGGAGTATCTCATACTTCCGCCGTTCGCTGGTGGACGTTCGTACTGCAGTGCTTTTCGGCCTGCCATCGATCTTCGCCGTATTCCTGACGAGAGCTTATCTGGTACCGGCGATTCCGGAGTGTGTATTGAGTCCGGGCAGTTTTGCGATCGACCGGAACATGCTCCTGATGCTCTTGTTTGCCGTACTGATGCTTACGGCATCCGTCAGCATGATCAGACCGGCTAAAATGCAGGAGAAAGCATCACAGAGACCCCCCAAGCCGAAACAGCCCCGTTATGCCCTGATCCTCCTTGAGGGAATTGTGGTCGGTACGCTCACAGGGCTTGTCGGTGCCGGAGGAGGCTTCTTGATCATCCCTGCCTTAGTCTTCCTCGGAGGCCTACCGATGAAACAAGCTATCGGCACCTCACTTGTAATCATATCAGCCAAATCGCTCTTGGGATTTCTGGGAGAGAATAATCCGGCAGGTCTCGACTGGGGGCTTCTCCTCTCGGTAACAGCTTTTGCCATCATCGGGATATTCATCGGAATGAAACTCTCCCAATATATTGACGGAGACAAACTCAAGCCGGCATTCGGCTGGTTCGTCTTCGTCATGGGGCTATACATCATTCTCAAAGAGACCATACTCGTA","10.40","6.94","28295","MLIAGYLASILIGLSLGLIGGGGSILTVPVLVYLMGIDPVLGTAYSLFIVGATSVVGSISYFRRSLVDVRTAVLFGLPSIFAVFLTRAYLVPAIPECVLSPGSFAIDRNMLLMLLFAVLMLTASVSMIRPAKMQEKASQRPPKPKQPRYALILLEGIVVGTLTGLVGAGGGFLIIPALVFLGGLPMKQAIGTSLVIISAKSLLGFLGENNPAGLDWGLLLSVTAFAIIGIFIGMKLSQYIDGDKLKPAFGWFVFVMGLYIILKETILV","1651372 1650542","TIGR ID: PG1572","conserved hypothetical protein","Inner membrane, Cytoplasm","Residues 3-264 have 40% similarity to D90909, Synechocystis sp. hypothetical protein. Residues 10-261 and 151-256 are 26% similar to (AP001518) unknown conserved protein, Bacillus halodurans.","
InterPro
IPR002781
Family
Protein of unknown function DUF81
PF01925\"[3-261]TDUF81


","BeTs to 6 clades of COG0730COG name: Predicted permeasesFunctional Class: RThe phylogenetic pattern of COG0730 is AmtK-QvCeB-HUJ-------Number of proteins in this genome belonging to this COG is 1","***** PF01925 (Domain of unknown function) with a combined E-value of 4.6e-11. PF01925A 153-178 PF01925B 228-253","Residues 176-256 are 48% similar to a (PROTEIN TRANSMEMBRANE CONSERVED MEMBRANE PLASMID) protein domain (PD001246) which is seen in P73802_SYNY3.","","Thu Jun 14 11:52:21 MDT 2001","","Thu Jun 14 11:52:21 MDT 2001","Thu Jun 14 11:52:21 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:52:21 MDT 2001","Thu Jun 14 11:52:21 MDT 2001","","","Thu Feb 22 13:24:50 MST 2001","Mon Jun 25 16:19:03 MDT 2001","Thu Feb 22 13:24:50 MST 2001","Mon Jun 25 16:19:03 MDT 2001","Mon Jun 25 16:19:03 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Apr 5 19:00:22 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 3 to 261 (E-value = 2.7e-33) place PG1374 in the DUF81 family which is described as Domain of unknown function DUF81 (PF01925)","Mon Jun 25 16:19:03 MDT 2001","34541225","","","","","","1","","","PG1572" "PG1375","1652261","1651413","849","ATGTACAAGAGCGCAGGGGAACCACATCAAAATCCGAGTAACATCTTCGTTGTTGAAATTTTTTTTCGCTCGTGTTTTTGGGCCTATGTATCATCCTTTTTAGGTACATATGGAGGAAAAAAGAATAAACAAAATGCAAGCATTAAATTGCGGCAGAGAAGAGATAGAGCGAAAGGCTTTTCGTTCCATTTCTTTCGGTTGCGTACTTGTTTTATTATGTTTGCTCCTATGAAGCAGATAGAAGATATATCCGAGTTTCGCTCTTCGCCTGAGCTTGTGGACAAACTGTATAAGCATGGCATCCTCAAGGTCTACAAGGCCGGTAGCGTTATCCTCAATGAGAATGCACATGTCCGGTCCATTCCTATCGTTATCAAAGGGGTCATGAGGGTAATCCGTACCGAAGAGGATGGCAGAGAAATCCTGCTCTACTATATCAAGGCAGGCGAAAGCTGTATCATGTCTTTTCTTGGGGGCCTGCACAATGAGACAAGCAAGGTGAAGGTGGAGATCGAAGACGATGCCGAGATTCTTTTCTTGCCCGTCGATAAGGTTTCCCTCTTTATGAAGGAGCATCCCGAATGGCTCAACTACATCTTCCGCTCCTATCACAAGCGATTCGAGGAGCTATTAGATACGGTGAATGCCATTGCTTTCAAGAAGATGGACGAACGCCTACTGGCCCTCATTCAAAAGAAAGCCGAACTCGTGGAGGGTAATACTATACAGATCACGCACGAACAACTGGCTAATGAATTGGGAACAGCCAGGGCCGTAGTATCAAGGCTGCTCAAACAATTGGAAGAATCCGGCATCGTTCGCTTAGGGCGTAACAAAATCACCCTTATG","10.10","10.80","32714","MYKSAGEPHQNPSNIFVVEIFFRSCFWAYVSSFLGTYGGKKNKQNASIKLRQRRDRAKGFSFHFFRLRTCFIMFAPMKQIEDISEFRSSPELVDKLYKHGILKVYKAGSVILNENAHVRSIPIVIKGVMRVIRTEEDGREILLYYIKAGESCIMSFLGGLHNETSKVKVEIEDDAEILFLPVDKVSLFMKEHPEWLNYIFRSYHKRFEELLDTVNAIAFKKMDERLLALIQKKAELVEGNTIQITHEQLANELGTARAVVSRLLKQLEESGIVRLGRNKITLM","1652273 1651413","TIGR ID: PG1573NO TIGR ID corresponds to this gene.","possible cAMP receptor protein (catabolite gene activator) (cAMP-regulatory protein)","Cytoplasm, Periplasm","Numerous weak hits in gapped BLAST; e.g. residues 92-273 have 26% similarity to U32776, H. influenzae catabolite gene activator (crp), residues 93-275 have 27% similarity to U16318, P. aeruginosa cyclic AMP receptor-like protein, residues 99-273 have 24% similarity to L47539, H. somnus cyclic AMP receptor protein.","
InterPro
IPR000595
Domain
Cyclic nucleotide-binding
PF00027\"[102-194]TcNMP_binding
SM00100\"[84-204]TcNMP
SSF51206\"[80-220]TcNMP_binding
InterPro
IPR001808
Domain
Bacterial regulatory protein, Crp
PR00034\"[242-258]T\"[258-273]THTHCRP
PF00325\"[242-273]TCrp
InterPro
IPR012318
Domain
Helix-turn-helix motif, Crp-type
PS51063\"[220-283]THTH_CRP_2
InterPro
IPR014710
Domain
RmlC-like jelly roll fold
G3DSA:2.60.120.10\"[89-220]TRmlC-like_jellyroll
noIPR
unintegrated
unintegrated
SSF46785\"[221-283]TSSF46785


","BeTs to 5 clades of COG0664COG name: cAMP-binding domains - Catabolite gene activator and regulatory subunit of cAMP-dependent protein kinasesFunctional Class: TThe phylogenetic pattern of COG0664 is a---YQvCEbRH-----Lin-Number of proteins in this genome belonging to this COG is 3","***** IPB001808 (Bacterial regulatory proteins, Crp family) with a combined E-value of 1.2e-12. IPB001808A 115-166 IPB001808B 242-273","No significant hit to the ProDom database.","","Thu Jun 14 11:52:50 MDT 2001","","Thu Jun 14 11:52:50 MDT 2001","Thu Jun 14 11:52:50 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:52:50 MDT 2001","Thu Jun 14 11:52:50 MDT 2001","","Fri Jun 15 11:22:25 MDT 2001","Fri Jun 15 11:22:25 MDT 2001","Mon Jun 25 16:21:31 MDT 2001","Thu Feb 22 15:22:56 MST 2001","Mon Jun 25 16:21:31 MDT 2001","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Mar 19 15:32:45 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 99 to 194 (E-value = 1.8e-08) place PG1375 in the cNMP_binding family which is described as Cyclic nucleotide-binding domain (PF00027)Residues 242 to 273 (E-value = 1.6e-06) place PG1375 in the Crp family which is described as Bacterial regulatory proteins, crp family (PF00325)","Mon Jun 25 16:21:31 MDT 2001","34541226","","","Chandler,M.S. 1992. The gene encoding cAMP receptor protein is required for competence development in Haemophilus influenzae Rd. Proc. Natl. Acad. Sci. U.S.A. 89 (5): 1626-1630. PubMed: 1542653.","","Mon Mar 19 15:32:45 MST 2001","1","","","PG1573" "PG1376","1653159","1654712","1554","ATGAATCGGTTTGATTATATCGTAGTCGGAGGCGGCCTTGCCGGCCTCTATACGGCTTTCAAGGCTTCGAAGCATGGTCGGGTAGCTCTGATAACCAAAGCTGACATCCATGAGAGCAATTCGTACTTTGCACAAGGGGGAGTCGCAGCGGTTACTGCTGCTGACGATGCACCGGACAACCACTATAACGATACGGTCGAAGCAGGTCGGGGCCTTTGTGAGGATGAAGCCGTAAGGGTACTTGCCGAAGAGGCTCCGGAGCGGATCGATGAGTTGATCCGTTGGGGGATGCGTTTCGATACGGAAGCTGATGGCCTATTGGCTCTGGGGCTTGAAGGCGGACACCACCACAAGCGGATTCTGCATGCAGGGGGTGATTCTACCGGTAGGATGCTCACGAGCTTTATGATCGATAGCGTGCTGCAAACTTCTGCAATAGAGATATTTGTCAATCACCAAGCGGTCGAATTGCTGATAGACGACCTCGGTTGCCGTGGCGTACGTACATGGGATTGGGGACATGGGCGTGAAGTCGTTTTCTATGGCAAGCATACGGTGATGGCCACCGGGGGATCGGCTGCCATCTACCGAAGATCCACCAATCCGCAGGGTACCCTCGGAGATGGGATTGCCCTCTGCTATCTTGCCGGCTGTGAGGTGCGCGACATGGAGTTTGTCCAATTTCATCCCACAGCTCTGTACAATCCGAAAGGAGAAGCCTTCCTGATCAGTGAGGCCGTACGGGGAGAAGGGGCGCATCTATATAATAGTAGAGGCGAACGCTTCATGCAAGGCGTTCACGAATTGGGCGAATTGGCCCCTCGCGATGTGGTGGCACGGCGGATCTTCTTAGAGATGCGACGTTTGGGAGACGAATATGTCTATCTCGATTTGCGACATCTGGATCCGGATCATATTCGCAAACGTTTTCCCACGATATGTGCTCGCTGTGCAGAGTTGGGTTTGGATCTGACAGACCGTATTCCTGTGGCTCCGGCTGCACACTACACAGTGGGAGGGATTAGTACGGATCTGAATGGCTGTACGGCCGTACCTCATCTATATGCTGTGGGAGAGGTGGCTTCTACCGGAATAATGGGGGCAAACAGGTTGGCCTCCAATTCTCTGATCGAATGCCTCGTGTTCGGTCATCGTGTTGTGGCTGATACGATTGCCTCGGATTCGATTGACTATCCGACAATGCCATTGAGCGTGGTTGGCTATCCTAAGCCGAAAGATGCATCGCTCTATCATAAGGTAAAAGAGCAGTTGTCCCGTCTGATGACCGATTATGTCGGTATCATTCGTAACGAAGAAGGTCTTCTGTCCGTGGATCGGAAGATAGAAGAACTTCGGCGGACACTACTCGGAACAGAAGATCTTTATGCTTGTTTTGCCGAGCAGCTGCTGACAGTGGGTCAGCTCATCGTTCGGGGGGCGATAGCTCGCCGAGAAAGTAGAGGAGGGCATTATCGGGAAGACTATCCCGATACGAGCGAAGCCTATCGCAAGCACTCCTCTTACACCCTTGCCGGCGGAGCGGGAAATACCAAA","6.20","-10.32","56874","MNRFDYIVVGGGLAGLYTAFKASKHGRVALITKADIHESNSYFAQGGVAAVTAADDAPDNHYNDTVEAGRGLCEDEAVRVLAEEAPERIDELIRWGMRFDTEADGLLALGLEGGHHHKRILHAGGDSTGRMLTSFMIDSVLQTSAIEIFVNHQAVELLIDDLGCRGVRTWDWGHGREVVFYGKHTVMATGGSAAIYRRSTNPQGTLGDGIALCYLAGCEVRDMEFVQFHPTALYNPKGEAFLISEAVRGEGAHLYNSRGERFMQGVHELGELAPRDVVARRIFLEMRRLGDEYVYLDLRHLDPDHIRKRFPTICARCAELGLDLTDRIPVAPAAHYTVGGISTDLNGCTAVPHLYAVGEVASTGIMGANRLASNSLIECLVFGHRVVADTIASDSIDYPTMPLSVVGYPKPKDASLYHKVKEQLSRLMTDYVGIIRNEEGLLSVDRKIEELRRTLLGTEDLYACFAEQLLTVGQLIVRGAIARRESRGGHYREDYPDTSEAYRKHSSYTLAGGAGNTK","1653123 1654712","TIGR ID: PG1576","l-aspartate oxidase (quinolinate synthetase B)","Cytoplasm","Residues 2-506 have 41% similarity to D90916, Synechocystis sp. L-aspartate oxidase.Residues 5-497 have 40% similarity to AE004316, V. cholerae l-aspartate oxidase.Residues 5-497 have 41% similarity to AE000344, E. coli l-aspartate oxidase.This sequence is similar to BT3184.","
InterPro
IPR001100
Family
Pyridine nucleotide-disulphide oxidoreductase, class I
PR00411\"[5-27]T\"[354-361]TPNDRDTASEI
InterPro
IPR003953
Domain
Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal
PF00890\"[5-376]TFAD_binding_2
InterPro
IPR004112
Domain
Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal
PF02910\"[469-497]TSucc_DH_flav_C
SSF46977\"[412-514]TSucc_DH_flav_C
InterPro
IPR005288
Family
L-aspartate oxidase
TIGR00551\"[2-496]TnadB
InterPro
IPR013027
Domain
FAD-dependent pyridine nucleotide-disulphide oxidoreductase
PR00368\"[5-27]T\"[354-361]TFADPNR
noIPR
unintegrated
unintegrated
G3DSA:1.20.58.100\"[404-497]TG3DSA:1.20.58.100
G3DSA:3.50.50.60\"[3-392]TG3DSA:3.50.50.60
PTHR11632\"[2-504]TPTHR11632
PTHR11632:SF6\"[2-504]TPTHR11632:SF6
SSF51905\"[1-428]TSSF51905
SSF56425\"[223-336]TSSF56425


","BeTs to 6 clades of COG0029COG name: Aspartate oxidaseFunctional Class: HThe phylogenetic pattern of COG0029 is ---k-q-cebr----------Number of proteins in this genome belonging to this COG is 1","***** IPB000464 (Fumarate reductase / succinate dehydrogenase FAD-binding site) with a combined E-value of 3.7e-91. IPB000464A 5-26 IPB000464B 28-54 IPB000464C 56-71 IPB000464D 86-110 IPB000464E 120-137 IPB000464F 206-255 IPB000464G 258-291 IPB000464H 318-348 IPB000464I 353-384 IPB000464J 458-500","Residues 118-389 are 47% similar to a (FLAVOPROTEIN SUBUNIT OXIDOREDUCTASE FAD DEHYDROGENASE) protein domain (PD001219) which is seen in NADB_ECOLI.Residues 413-497 are 40% similar to a (FLAVOPROTEIN SUBUNIT DEHYDROGENASE OXIDOREDUCTASE) protein domain (PD001222) which is seen in Y033_METJA.Residues 27-99 are 39% similar to a (FLAVOPROTEIN SUBUNIT OXIDOREDUCTASE DEHYDROGENASE) protein domain (PD149640) which is seen in NADB_SYNY3.","","Thu Jun 14 11:53:00 MDT 2001","","Thu Jun 14 11:53:00 MDT 2001","Thu Jun 14 11:53:00 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:53:00 MDT 2001","Thu Jun 14 11:53:00 MDT 2001","","","Mon Mar 19 15:37:35 MST 2001","Fri Dec 19 11:00:36 2003","Thu Feb 22 13:40:23 MST 2001","Mon Jun 25 16:24:52 MDT 2001","Mon Jun 25 16:24:52 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 3-508 have 24% similarity to PG1413, Fumarate reductase / succinate dehydrogenase flavoprotein component.","Mon Jun 25 16:24:52 MDT 2001","Mon Mar 19 15:37:35 MST 2001","-56% similar to PDB:1CHU STRUCTURE OF L-ASPARTATE OXIDASE: IMPLICATIONS FOR THE SUCCINATE DEHYDROGENASE/ FUMARATE REDUCATSE FAMILY (E_value = 1.4E_89);-55% similar to PDB:1KNP E. coli L-aspartate oxidase: mutant R386L in complex with succinate (E_value = 9.2E_89);-55% similar to PDB:1KNR L-aspartate oxidase: R386L mutant (E_value = 9.2E_89);-46% similar to PDB:1KF6 E. coli Quinol-Fumarate Reductase with Bound Inhibitor HQNO (E_value = 7.6E_59);-46% similar to PDB:1KFY QUINOL-FUMARATE REDUCTASE WITH QUINOL INHIBITOR 2-[1-(4-CHLORO-PHENYL)-ETHYL]-4,6-DINITRO-PHENOL (E_value = 7.6E_59);","","","Residues 101 to 423 (E-value = 7.3e-116) place PG1376 in the FAD_binding_2 family which is described as FAD binding domain (PF00890)Residues 421 to 508 (E-value = 2.3e-10) place PG1376 in the Succ_DH_flav_C family which is described as Fumarate reductase/succinate dehydrogenase flavoprotein C-terminal domain (PF02910)","Fri Dec 19 11:00:36 2003","34541228","","","","","","1","","","PG1576" "PG1377","1654762","1655586","825","ATGCTTTTGGAAAAATTGATCGATCTGGCAATTGCAGAGGACATTGCCGATGGAGACATTTCTTCCAATGCCATTATCCCCCAATCGGAAGGAGCTGCAGCCACAATGGTAATGAAGGCTGATGGCATCATATCCGGCATGGAGGTAGCTCGCCGTGTCTTCGAACGATTCGAAGCCGTGACTTGGACTCCCTATGTATCGGATGGCGGCTCCGTAAAACGCGGTCAAGTAATCCTGCGTGTGGAAGGCAGTTACCGGGCTTTGTTGCAAGCCGAACGATTGGCACTTAATTTTTTGCAAAGAATGAGTGGTATTGCCACTATGACCGCTCGCTATGCCGAGGCTTTGAAAGGTACGGCTGTAAGGCTTTTGGATACCCGTAAGACGGCACCCGGTATGCGAATAACGGACAAGATGGCCGTTCGCCATGGCGGTGGACATAATCATCGCATGGGACTCTATGATATGATTATGCTCAAGGACAATCACATCAAGGTAGCCGGAGGGATACCCCAAGCCATCGAAGCGGCGAGAAGAGCACTCCCTCTCTCGATCAAGCTGGAAGTGGAAACGTCTAATTTGGCTGAGGTCGAAGAAGCAGTACGCTATGGTGCAGACATAATCATGCTGGACAATATGGACAACGATACCATGTGCGAAGCGGTGAGGCTGATTGCCGGTCGGGCCAGGACAGAAGCCAGCGGCAATATGACACTCGAACGGCTGCAAAGTGTGGCAGAAACGGGTGTTGATTACATCAGCGTAGGCGCTTTGACTCATAGCGTTACGGCCATGGACATCAGCATGAATTTCCTCCTTACTCAG","5.80","-3.83","29886","MLLEKLIDLAIAEDIADGDISSNAIIPQSEGAAATMVMKADGIISGMEVARRVFERFEAVTWTPYVSDGGSVKRGQVILRVEGSYRALLQAERLALNFLQRMSGIATMTARYAEALKGTAVRLLDTRKTAPGMRITDKMAVRHGGGHNHRMGLYDMIMLKDNHIKVAGGIPQAIEAARRALPLSIKLEVETSNLAEVEEAVRYGADIIMLDNMDNDTMCEAVRLIAGRARTEASGNMTLERLQSVAETGVDYISVGALTHSVTAMDISMNFLLTQ","1654747 1655586","TIGR ID: PG1577","nicotinate-nucleotide pyrophosphorylase (quinolinate phosphoribosyltransferase)","Cytoplasm","Numerous significant hits to nicotinate-nucleotide pyrophosphorylase (quinolinate phosphoribosyltransferase) in gapped BLAST; e.g. residues 10-273 have 48% similarity to AE004866, P. aeruginosa nicotinate-nucleotide pyrophosphorylase,residues 3-273 have 45% simlarity to U65510, R. rubrum nicotinate-nucleotide pyrophosphorylase, residues 3-269 have 45% similarity to AB038494, N. tabacum quinolinate phosphoribosyltransferase.","
InterPro
IPR002638
Family
Quinolinate phosphoribosyl transferase
PD003988\"[113-271]TQ_phspho_trans
PF01729\"[105-270]TQRPTase_C
PF02749\"[15-103]TQRPTase_N
InterPro
IPR004393
Family
Nicotinate-nucleotide pyrophosphorylase
TIGR00078\"[6-271]TnadC
InterPro
IPR013785
Domain
Aldolase-type TIM barrel
G3DSA:3.20.20.70\"[108-271]TAldolase_TIM
noIPR
unintegrated
unintegrated
G3DSA:3.90.1170.20\"[10-107]TG3DSA:3.90.1170.20
SSF51690\"[105-271]TSSF51690
SSF54675\"[1-104]TSSF54675


","BeTs to 12 clades of COG0157COG name: Nicotinate-nucleotide pyrophosphorylaseFunctional Class: HThe phylogenetic pattern of COG0157 is amtkyqvcebrhuj-------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 18-270 are 47% similar to a (TRANSFERASE NICOTINATE-NUCLEOTIDE) protein domain (PD003988) which is seen in NADC_RHORU.","","Thu Jun 14 11:53:21 MDT 2001","","Thu Jun 14 11:53:21 MDT 2001","Thu Jun 14 11:53:21 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:53:21 MDT 2001","Thu Jun 14 11:53:21 MDT 2001","","","Mon Mar 19 16:07:49 MST 2001","Mon Jun 25 16:26:54 MDT 2001","Thu Feb 22 13:50:06 MST 2001","","Mon Jun 25 16:26:54 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Mar 19 16:07:49 MST 2001","-69% similar to PDB:1X1O Crystal structure of project ID TT0268 from Thermus thermophilus HB8 (E_value = 1.5E_70);-63% similar to PDB:1QAP QUINOLINIC ACID PHOSPHORIBOSYLTRANSFERASE WITH BOUND QUINOLINIC ACID (E_value = 4.2E_57);-59% similar to PDB:1QPN QUINOLINATE PHOSPHORIBOSYL TRANSFERASE FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH NCNN (E_value = 3.3E_46);-59% similar to PDB:1QPO QUINOLINATE PHOSPHORIBOSYL TRANSFERASE (QAPRTASE) APO-ENZYME FROM MYCOBACTERIUM TUBERCULOSIS (E_value = 3.3E_46);-59% similar to PDB:1QPQ Structure of Quinolinic Acid Phosphoribosyltransferase from Mycobacterium Tuberculosis: A Potential TB Drug Target (E_value = 3.3E_46);","","","Residues 15 to 103 (E-value = 7.2e-25) place PG1377 in the QRPTase_N family which is described as Quinolinate phosphoribosyl transferase, N-terminal domain (PF02749)Residues 105 to 270 (E-value = 4.6e-83) place PG1377 in the QRPTase_C family which is described as Quinolinate phosphoribosyl transferase, C-terminal domain (PF01729)","Mon Jun 25 16:26:54 MDT 2001","34541229","","","","","","1","","","PG1577" "PG1378","1655609","1656532","924","ATGCAAACAAAGGATATTCTTAAGGAGATAGAACTTCTCAAGAAAGAACGGAATGCCATTATTTTGGCGCACTACTATGCACGCCCTGAGGTGCAGGACATTGCCGATTATATCGGCGATTCTCTTGGTCTGTCCCGTCAGGCTGCCGATACGGAGGCGGATACGATACTCTTTTGCGGAGTCCACTTCATGGCCGAAACGGCTTCGATTATTTCGCCGCAGAAGACTATCCTCACTCCCACGAAATACGCCGGTTGTTCTTTGGCCGAAGGTGCCTCTGCTGAAGGCTTGCGTCGGTGGAAGGAGCAGAACCCGGATGGACTCATCGTTAGCTATGTCAATACGACTGCCGAGGTAAAGGCTTGGACGGACTACTGCTGTACAAGCAGCAATGCACTCAAGGTAGTGGAGAGCTTGCCTCGAGACAGAAAAATTCTCTTTGGCCCGGATAGAAACCTTGGAGCTTATATCTCGCGAAAGACAGGACGGGAGATGGAACTTTGGAATGCTTCGTGTTTCGTACATGAGCGAATTACGGAAGAATCCATCTTAGAGGCTATGGAGCTGTATCCCGATGCTGATATTCTCATTCATCCGGAGAGCGAGGGCTCTCATTCGCCACGAGTGCTGAGTAGCGATCGCTGCTTTATGTATTCCACGGCCGGTATTCTTAATCATGCTCGGGAGTCCGACAAAAAAATGTTTGTTATTGCGACAGAGCCGGAGACGCTACACGTGTTGCGGAAAGAAAATCCGGGTAAAACGTTTATTGCCATTCAACCCGACAACCGCTGTTTTCATATGAAACAAACAGGTTTGTGGGAGGTCTTGGAAGCTCTCCGCCACAACCGTTATGAAGTAAAGGTGCCTGCTGAAATCAGGGAGAAGGCTTTGCTCTCGATCGAGCGAATGCTGGCCGTTGGC","6.10","-5.14","34761","MQTKDILKEIELLKKERNAIILAHYYARPEVQDIADYIGDSLGLSRQAADTEADTILFCGVHFMAETASIISPQKTILTPTKYAGCSLAEGASAEGLRRWKEQNPDGLIVSYVNTTAEVKAWTDYCCTSSNALKVVESLPRDRKILFGPDRNLGAYISRKTGREMELWNASCFVHERITEESILEAMELYPDADILIHPESEGSHSPRVLSSDRCFMYSTAGILNHARESDKKMFVIATEPETLHVLRKENPGKTFIAIQPDNRCFHMKQTGLWEVLEALRHNRYEVKVPAEIREKALLSIERMLAVG","1655609 1656532","TIGR ID: PG1578","quinolinate synthetase","Cytoplasm","Numerous significant hits to quinolinate synthetase in gapped BLAST; e.g. residues 18-307 have 46% similarity to D90916, Synechocystis sp. quinolinate synthetase, residues 18-305 have 43% similarity to U30821, C. paradoxa quinolinate synthetase, residues 17-308 have 44% similarity to U00010, M. leprae quinolinate synthetase. ","
InterPro
IPR003473
Family
Quinolinate synthetase A
PF02445\"[6-307]TNadA
TIGR00550\"[1-308]TnadA


","BeTs to 10 clades of COG0379COG name: Quinolinate synthaseFunctional Class: HThe phylogenetic pattern of COG0379 is -mtk-qvcebr-uj-------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 18-307 are 46% similar to a (QUINOLINATE SYNTHETASE A PYRIDINE) protein domain (PD005431) which is seen in NADA_SYNY3.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Feb 22 13:56:58 MST 2001","Mon Mar 19 16:16:13 MST 2001","Thu Feb 22 13:56:58 MST 2001","","Thu Feb 22 13:56:58 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Mar 9 15:54:00 MST 2001","-63% similar to PDB:1WZU Crystal structure of quinolinate synthase (nadA) (E_value = 2.2E_57);-38% similar to PDB:1KHO Crystal Structure Analysis of Clostridium perfringens alpha-Toxin Isolated from Avian Strain SWCP (E_value = 2.2E_57);-62% similar to PDB:1I5E CRYSTAL STRUCTURE OF BACILLUS CALDOLYTICUS URACIL PHOSPHORIBOSYLTRANSFERASE WITH BOUND UMP (E_value = 2.2E_57);-54% similar to PDB:1V9S Crystal structure of TT0130 protein from Thermus thermophilus HB8 (E_value = 2.2E_57);","","","Residues 6 to 307 (E-value = 1e-137) place PG1378 in the NadA family which is described as Quinolinate synthetase A protein (PF02445)","Mon Mar 19 16:16:13 MST 2001","34541230","","","Suzuki,E. and Yasuno,Y. Nucleotide sequence of a gene coding for putative quinolinate synthetase. Unpublished.","","Mon Mar 19 16:20:11 MST 2001","1","","","PG1578" "PG1379","1656636","1657628","993","ATGAGTGAAACCATTGACATCAAGGCTCTCACAGAGCTTATTGAGCAGAAAAGCTCATTTGTGAATCTCATCACGCACGGTATGGCGCAGAATATCGTCGGACAGAACCATTTGGTGGAGTCGCTTCTGATCGGACTGTTGGCCGATGGACATATCCTGCTCGAAGGAGTACCGGGATTAGCCAAGACTTTGGCTATCAAAACTCTGGCCGGACTGATTAGTGCCAAGTACAACCGCATmCAATTTACACCGGACCTCTTGCCAGCTGACGTGGTAGGTACCATGATGTACAGCCAGAAACGGGAGGAATTTCAAGTAAAGCAAGGCCCTATTTTCGCAAACTTTATTTTGGCTGATGAGATCAACCGTGCTCCTGCCAAAGTGCAGAGTGCTCTGCTCGAAGCGATGCAGGAGAGACAGGTTACCATTGGGGAAACGACTTTCAAGCTCCCTGAGCCTTTCCTCGTAATGGCTACCCAGAATCCTATCGAGCAAGAGGGTACTTATCAGTTGCCAGAGGCACAGGTAGACCGATTCATGATGAAGGTGCTGATAGACTATCCCCAAAAGAAGGAGGAGATGCAGATCATTCGTCAGAATATCGGTGGCCGGTCGGCAGAGATTCGTCCGATAATCACTACGGAGGAAATACTGGAAGCGCGCCAAGTGATAAGGCAGGTGTATCTGGATGAGAAGATCGAGCAATATATAGTTGATATTGTTTTTGCCACGCGCTATCCCGAACAATTCGGCTTGAATGCTCTGAAAGATATGATCAGTTTCGGAGCTTCGCCCCGAGCTTCTATCAATTTAGCATTGGCTGCACGTGCATACGCCTTCATCAAGCATAGAGGTTATGTGATTCCTGAGGATGTACGTGCCGTATGTCATGACGTGATGCGTCACCGTATCGGACTCAGCTATGAGGCAGAGGCTAATAGTTTGACTCCGGATGCTGTCGTCAATGAGATCCTGAACAAAGTAGAAGTCCCT","5.20","-7.57","81420","MSETIDIKALTELIEQKSSFVNLITHGMAQNIVGQNHLVESLLIGLLADGHILLEGVPGLAKTLAIKTLAGLISAKYNRIQFTPDLLPADVVGTMMYSQKREEFQVKQGPIFANFILADEINRAPAKVQSALLEAMQERQVTIGETTFKLPEPFLVMATQNPIEQEGTYQLPEAQVDRFMMKVLIDYPQKKEEMQIIRQNIGGRSAEIRPIITTEEILEARQVIRQVYLDEKIEQYIVDIVFATRYPEQFGLNALKDMISFGASPRASINLALAARAYAFIKHRGYVIPEDVRAVCHDVMRHRIGLSYEAEANSLTPDAVVNEILNKVEVP","1656636 1657628","TIGR ID: PG1579","probable methanol dehydrogenase regulator","Cytoplasm","Numerous significant hits to probable moxR protein in gapped BLAST; e.g. residues 32-331 are 53% similar to pir||B70874 probable moxR protein of Mycobacterium tuberculosis (strain H37RV), residues 24-328 are 49% similar to gb|AAF96088.1| MoxR-related protein of Vibrio cholerae, residues 14-331 are 47% similar to gb|AAC66559.1| methanol dehydrogenase regulator (moxR) of Borrelia burgdorferi.This sequence is similar to BT0910. ","
InterPro
IPR011703
Domain
ATPase associated with various cellular activities, AAA-3
PF07726\"[51-181]TAAA_3
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[31-186]TG3DSA:3.40.50.300
PTHR22908\"[52-186]TPTHR22908
PTHR22908:SF15\"[52-186]TPTHR22908:SF15
SSF52540\"[9-322]TSSF52540


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 236-331 are 50% similar to a (SUBUNIT CHELATASE MAGNESIUM-CHELATASE IX PHOTOSYNTHESIS) protein domain (PD001683) which is seen in O53170_MYCTU.Residues 116-199 are 70% similar to a (PROTEIN REGULATORY MOXR PUTATIVE) protein domain (PD109444) which is seen in O58484_PYRHO.Residues 21-114 are 48% similar to a (PROTEIN MOXR REGULATORY METHANOL) protein domain (PD149903) which is seen in O87927_BORBU.Residues 52-186 are 32% similar to a (PROTEIN ATP-BINDING PROBABLE DYNEIN) protein domain (PD000403) which is seen in Q12019_YEAST.Residues 32-197 are 65% similar to a (PROTEIN ATP-BINDING PROTEASE SUBUNIT REGULATORY HOMOLOG) protein domain (PD000092) which is seen in O53170_MYCTU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","Tue Feb 6 13:40:01 MST 2001","Tue Feb 6 13:40:01 MST 2001","","","Fri Feb 9 13:35:55 MST 2001","Thu Dec 4 10:15:00 2003","Tue Feb 6 13:40:01 MST 2001","","Mon May 14 15:32:54 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 33-235 are 27% similar to PG0982, an undefined ATPase.","Fri Feb 9 13:35:55 MST 2001","Mon May 14 15:32:54 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 19 to 330 (E-value = 5.7e-08) place PG1379 in the Mg_chelatase family which is described as Magnesium chelatase, subunit ChlI (PF01078)","Mon May 14 15:32:54 MDT 2001","34541231","","","","","","1","","","PG1579" "PG1380","1657642","1658511","870","GTGCAGACAAGCGACCTACTTAAGAAAGTTCGACGGATCGAAATCAAAGCGCGAGGCCTTTCTCGACAAATCTTTGCCGGACAGTATCATTCCGCATTCAGAGGACGAGGTATGGCGTTCAGCGAAGTGCGCGAGTATACTGTAGGAGATGATGTGCGCGACATCGACTGGAATGTGACGGCACGTTATGCACGTCCCTATGTGAAAGTCTTCGAAGAGGAGCGTGAGCTGACAGTTATGTTGATGGTCGACATGTCCGGTTCGTTGTCTTTCGGTACAGAGGTGGAGACCAAGCGAGAGTTGACGGCTGAAGTAGCTGCTACATTGGCATTTTCCGCTATCCAAAATAATGACAAGATCGGAGTCCTTTTCTTTACGGACAGGATCGAAAAGTATGTGCCGCCCGCCAAGGGGAAGAAGCATATCCTATATATAATCAGGGAGCTGTTGGAGTTTCGTCCACAGAGCAGGGCCACGGATCTTTCAGTTCCGCTCTCTTACCTGACCCGCTTGGTGAAGAAGCGGTGTACAGCATTCCTGATTTCCGATTTCCAGTCAGAGAAAGATTCTTATGAAAAGACCTTGCTGATGTCTGCTCGTAAGCATGATATTGTAGCCATCAGGATATTCGATCGGCGAGAGGCCGATCTGCCAAATGTAGGGTTGATGCGCTTTCGCGATGCAGAGACAGGGCAGACTCATTGGGTGGATACCGCTGATAGCTCCGTTCGGAAAGCGTATGCGGATGCCTATGAGCGACGGCAAGTAGCACTTGCCGTTTTGCTCAAACGATGTGGTGTAGATACTACTGAGATACGTACGGGGCAGGATTTCGTGCAGCAGCTTCTTATCTTATTTAAAAAACGCTCA","10.20","9.89","33393","VQTSDLLKKVRRIEIKARGLSRQIFAGQYHSAFRGRGMAFSEVREYTVGDDVRDIDWNVTARYARPYVKVFEEERELTVMLMVDMSGSLSFGTEVETKRELTAEVAATLAFSAIQNNDKIGVLFFTDRIEKYVPPAKGKKHILYIIRELLEFRPQSRATDLSVPLSYLTRLVKKRCTAFLISDFQSEKDSYEKTLLMSARKHDIVAIRIFDRREADLPNVGLMRFRDAETGQTHWVDTADSSVRKAYADAYERRQVALAVLLKRCGVDTTEIRTGQDFVQQLLILFKKRS","1657642 1658511","TIGR ID: PG1580","conserved hypothetical protein","Cytoplasm","Residues 22-288 have 34% similarity to AE004731, P. aeruginosa hypothetical protein. Residues 3-277 have 30% similarity to AJ003222, B. burgdorferi hypothetical protein.Residues 21-282 have 32% similarity to AE004357, V. cholerae conserved hypothetical protein.This sequence is similar to BT0909.","
InterPro
IPR002035
Domain
von Willebrand factor, type A
SM00327\"[76-237]TVWA
InterPro
IPR002881
Domain
Protein of unknown function DUF58
PF01882\"[34-74]TDUF58


","BeTs to 7 clades of COG1721COG name: Uncharacterized ACRFunctional Class: SThe phylogenetic pattern of COG1721 is a--K-qvC-bR-----o----Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 135-289 are 27% similar to a (PROTEIN MAV169 RV1480) protein domain (PD035075) which is seen in YE80_MYCAV.Residues 116-288 are 30% similar to a (CONSERVED HYPOTHETICAL PROTEIN) protein domain (PD098784) which is seen in Q44926_BORBU.Residues 27-123 are 41% similar to a (PROTEIN CONSERVED LONG PULA) protein domain (PD005302) which is seen in YE80_MYCTU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Feb 22 14:02:35 MST 2001","Thu Dec 4 10:13:13 2003","Thu Feb 22 14:02:35 MST 2001","","Thu Feb 22 14:02:35 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Dec 4 10:13:13 2003","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Feb 22 14:02:35 MST 2001","34541232","","","","","","1","","","PG1580" "PG1381","1658511","1659464","954","ATGAGACACTCTCTTGCCATTCGCTTTGTTCTTTCTGCATTTTGCATGCTCTTTGTCTCTTCCTTTCTGAAGGCGCAAGAGCTTTCTATCATAGGCAAACTCGACCGTGCAGAGATGCAAATAGGAGAGCAGGCAGTGATAGATATTACTATCCGCACGGCAGATTTGGCGCATACTCATCTGCAAATACCTACTGATTCGACGATGAGTCGGATCGAAATTTTGGCCTTTGGCATTACGGATACGGTTGTTGTGAAAGATCCGATCGTGGAGATAAAGGCTAAGATGGTGATTACCTCGTTCGATTCAACCCTGCTGGAGATCCCTCCTTTTATCGTTACGGATGGACAGGATCAGGTCATGTCCAAGAGTCTTTTCCTCAAAGTAACGATGCCGGAGATCGATCTTTCCAAACCGGATTCTATTTATGACATCAAGGAACCGTGGGGTGTGTCTTATACATGGAGCGATATATTCAATATCATGCTTCGCCATCCCCTTACGTGGACCATACTTGCCACCTTTTTGGCTGTATTGTCATATCTCTTTTATAAGAGATACAAGGAGAACCAAGCTCGCCGTCCTGTGGTGACACCTGAGGCCCCGGCTATTCCGGCTTATGACCGAGCTATTGCAGCCTTGGAATCATTACGTGCAAAAAAACTGGTGGAAGCCGGTTTGTATAAGGAATACTTTACGGAATTGACCGATTTGCTTCGGAGCTATATTGCCGAAACTCGCGAAATAGATGCCAGGGAGATGACCAGCAGCGAGATATTACAAGCTCTTCAGCGGATCGAACTTCCTGAAAAAGGAAGTCGCCTGCTGCATGGAATATTGCAAACGGCCGACCTGGCCAAGTTTGCCAAGTATAAACCGATACATGGAGAGGATGTGGAAGCTATTCGAGATGCTCGCGCCTTTCTCGATGAGGTGCATAATATCCGGGAGTCA","5.70","-5.34","36138","MRHSLAIRFVLSAFCMLFVSSFLKAQELSIIGKLDRAEMQIGEQAVIDITIRTADLAHTHLQIPTDSTMSRIEILAFGITDTVVVKDPIVEIKAKMVITSFDSTLLEIPPFIVTDGQDQVMSKSLFLKVTMPEIDLSKPDSIYDIKEPWGVSYTWSDIFNIMLRHPLTWTILATFLAVLSYLFYKRYKENQARRPVVTPEAPAIPAYDRAIAALESLRAKKLVEAGLYKEYFTELTDLLRSYIAETREIDAREMTSSEILQALQRIELPEKGSRLLHGILQTADLAKFAKYKPIHGEDVEAIRDARAFLDEVHNIRES","1658511 1659464","TIGR ID: PG1581","conserved hypothetical protein","Cytoplasm, Inner membrane","This sequence corresponds to gi:34397549 in Genbank.Its nearest neighbor in the NR database is gi:60493416 from Bacteroides fragilis NCTC 9343.","
noIPR
unintegrated
unintegrated
signalp\"[1-25]?signal-peptide
tmhmm\"[5-23]?\"[166-184]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Mar 8 11:26:01 2005","Tue Mar 8 11:26:01 2005","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 8 11:26:01 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541233","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Tue Mar 8 11:26:01 2005","","1","","","PG1581" "PG1382","1659464","1660444","981","ATGACATTTGCATATCCTGAATTGCTTTGGCTGCTGATCCTGCTGCCTTTGATAGCGACTTGGTATATCCTGCAAGCACGTAAGACTTCGGCAACGATGACCATATCTTCATTGAAGCCCTTTGAAGGAAGTCGCCGAGGTTTGAGGGTCTATCTGCGCCATTCGTTGCCGATATTGAGAGCTCTTTCGGTCGGTTTTCTCATTATTGCTTTGGCTCGTCCGCAGAATACCAATAGCTGGCAGAAAGATTCGATCGAGGGCATAGATATTATGTTGGCCATGGATGTGTCAGGCAGTATGCAGGCCATGGACTTCAAGCCGAATCGCTTGGAGGCAGCCAAAGATGTAGCGATTTCCTTTATCAACAATCGTCCGAACGACAATATCGGGATGGTTACATTCGCCGGAGAGAGCTTTACTCAATGTCCATTGACTACCGACCATACCGTATTGCTTAATATGGTACAGGACTTGCAGATGGGTGTTCTGGATGATGGTACAGCTATCGGAATGGGATTGGCTACGGCCGTCAATCGACTGAAGGACAGCAAAGCCAAGAGCCGCGTGGTTATTCTGCTGACGGACGGATCAAACAACATGGGCGACATCACACCCCGAATGGCAGCCGATATTGCCAGAACGTTCGGTATTCGTGTGTACACAGTCGGTGTAGGCACACGAGGAGAAGCTCCTTTCCCCATTCAGACGGAATTCGGAGTTCGGATTCAGAATGTGCCTGTCGATATAGACGAACCCACATTGGACGGAATTGCCGAGGTATCGGGTGGAAAATACTTCAGGGCTGTCGATAATGAAACGCTGAATGAAATCTACAAGGAAATCGACAAATTGGAGAAGACGAGACTTATGACCAAGAGCTTCAAGGCTTATGAGGAAAAATACTTTGTCTATGCCCTTATTGCTTTTCTCTTGTTGCTGACAGAGTTTTTGCTTCGCAATACACTTCTTCGTTCCAACCCG","7.50","0.45","36440","MTFAYPELLWLLILLPLIATWYILQARKTSATMTISSLKPFEGSRRGLRVYLRHSLPILRALSVGFLIIALARPQNTNSWQKDSIEGIDIMLAMDVSGSMQAMDFKPNRLEAAKDVAISFINNRPNDNIGMVTFAGESFTQCPLTTDHTVLLNMVQDLQMGVLDDGTAIGMGLATAVNRLKDSKAKSRVVILLTDGSNNMGDITPRMAADIARTFGIRVYTVGVGTRGEAPFPIQTEFGVRIQNVPVDIDEPTLDGIAEVSGGKYFRAVDNETLNEIYKEIDKLEKTRLMTKSFKAYEEKYFVYALIAFLLLLTEFLLRNTLLRSNP","1659464 1660444","TIGR ID: PG1582","bacteroides aerotolerance operon protein, batA","Inner membrane, Cytoplasm","This sequence corresponds to gi:34397550 in Genbank.Its nearest neighbor in the NR database is gi:29338212 from Bacteroides thetaiotaomicron VPI-5482.This sequence is similar to BT0907.","
InterPro
IPR002035
Domain
von Willebrand factor, type A
PR00453\"[88-105]T\"[128-142]T\"[189-197]TVWFADOMAIN
PF00092\"[89-281]TVWA
SM00327\"[87-286]TVWA
PS50234\"[89-281]TVWFA
InterPro
IPR014756
Domain
Immunoglobulin E-set
SSF81296\"[23-81]TIg_E-set
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.410\"[73-281]TG3DSA:3.40.50.410
PTHR22550\"[1-323]TPTHR22550
SSF53300\"[83-283]TSSF53300


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 53-214 are 30% similar to a (PROTEIN TRANSMEMBRANE MAV335 RV1481) protein domain (PD036610) which is seen in YE81_MYCAV.Residues 45-285 are 29% similar to a (PROTEIN BB0173 TRANSMEMBRANE) protein domain (PD041149) which is seen in Y173_BORBU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Mar 30 12:08:21 2005","Wed Mar 30 12:08:21 2005","Thu Feb 22 14:09:31 MST 2001","","Thu Feb 22 14:09:31 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 3-319 show 34% similarity to PG1383, a predicted Bacteroides aerotolerance operon protein batB.","Mon Mar 19 16:35:28 MST 2001","Wed Mar 30 12:08:21 2005","No significant hits to the PDB database (E-value < E-10).","","","Residues 89 to 281 (E-value = 8.9e-30) place PG1382 in the VWA family which is described as von Willebrand factor type A domain (PF00092)","Mon May 14 15:35:50 MDT 2001","34541234","","","Tang YP, Dallas MM, Malamy MH.Characterization of the Batl (Bacteroides aerotolerance) operon in Bacteroides fragilis: isolation of a B. fragilis mutant with reduced aerotolerance and impaired growth in in vivo model systems.Mol Microbiol. 1999 Apr;32(1):139-49.PMID: 10216867","","Wed Mar 30 15:45:01 2005","1","","","PG1582" "PG1383","1660458","1661474","1017","ATGTTCAGATTTTATTCACCCGAATACTTATACTTACTGCTGCTGCTCCCATTGCTTGTGGGGGTAGGCGTCTATGCTTATCGCAAAAGACGGGCGCAAGAAAGACGGTTTGCCGAACTTCCGCTGCTAAAGGCTCTCAAACCGGAAGCAAGTACCAAACGTCGGATCTGGCGCAACGGATTTCTTCTTCTTGCCATCGTTTTCTTGATCGGGATGCTTGCCCGTCCGCAAATAAGTATTCGTGTGGATGTGCCTAAAGAGGAGAAAGGTATCGAGGCTATGATTTGTTTGGATATTTCCAACTCCATGCTCTGTGAAGATGTCAAGCCCAATCGTTTGAGTTTTGCCAAGCAAGTGTTGGGAAAGCTCTTTGACGGCTTGCAGAACGACAAGGTTGGATTGGTTGTATTCGCAGGTAATGCTTATACGCAAATACCGATTACTACGGATTTGTCTGCAGCCAAACAGTTTCTTGCAGATATAAGTCCCAATATGGTTACAGCCCAAGGAACGGCTATCGGAGCGGCTATCGAACTTGCCTCCAAATCTTTTTCCGATAATAAGGAAATCGGTAAGACTATCATTGTCCTGACGGATGGAGAAAATCATGAAGGAAATGCCATCGAAGCGGCACAGCAAGCCCATGAAGCAGGCATACGGGTCAATGTTATTGGTCTCGGAACAGCCTTGGGGGCACCTATACCTATTGAAGAAGGATACCTCAAAGATGAAACGGGCAATCCTGTCGTTACCAAATTCGACGAAAAGATGTGCCGTGACATTGCTTCAGCAGGAGAGGGTACTTTCTTTTCCGGACAGAGTGCTTCTGCGCTGGTTCGGGCTATAGAGAGCCAGCTGGACAAACTCCCCAAAGCCGTACTTTCATCTTCGTCTTCTTCCGGCTATCGCGAAGTGTACGGATGGTTCGGACTTGCGGCTTTGATATGTTTATTGTTGGAATTCCTGATTCAGGAGCGGAAGAGTAGGTTCTTCAGTAGGATCAAATTGTTTGACAGA","8.80","4.31","37301","MFRFYSPEYLYLLLLLPLLVGVGVYAYRKRRAQERRFAELPLLKALKPEASTKRRIWRNGFLLLAIVFLIGMLARPQISIRVDVPKEEKGIEAMICLDISNSMLCEDVKPNRLSFAKQVLGKLFDGLQNDKVGLVVFAGNAYTQIPITTDLSAAKQFLADISPNMVTAQGTAIGAAIELASKSFSDNKEIGKTIIVLTDGENHEGNAIEAAQQAHEAGIRVNVIGLGTALGAPIPIEEGYLKDETGNPVVTKFDEKMCRDIASAGEGTFFSGQSASALVRAIESQLDKLPKAVLSSSSSSGYREVYGWFGLAALICLLLEFLIQERKSRFFSRIKLFDR","1660458 1661474","TIGR ID: PG1583","bacteroides aerotolerance operon protein, batB","Inner membrane, Cytoplasm","This sequence corresponds to gi:34397551 in Genbank.Its nearest neighbor in the NR database is gi:60493414 from Bacteroides fragilis NCTC 9343.","
InterPro
IPR002035
Domain
von Willebrand factor, type A
PR00453\"[91-108]T\"[131-145]T\"[193-201]TVWFADOMAIN
PF00092\"[92-286]TVWA
SM00327\"[90-283]TVWA
PS50234\"[92-289]TVWFA
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.410\"[88-227]TG3DSA:3.40.50.410
PTHR22550\"[1-323]TPTHR22550
SSF53300\"[86-289]TSSF53300


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 30-222 are 24% similar to a (PROTEIN TRANSMEMBRANE MAV335 RV1481) protein domain (PD036610) which is seen in YE81_MYCAV.Residues 61-271 are 29% similar to a (PROTEIN BB0173 TRANSMEMBRANE) protein domain (PD041149) which is seen in Y173_BORBU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Mar 30 13:53:06 2005","Wed Mar 30 13:53:06 2005","Thu Feb 22 14:15:52 MST 2001","","Thu Feb 22 14:15:52 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 4-324 have 34% similarity to PG1382 , batA.","Thu Feb 22 14:15:52 MST 2001","Wed Mar 30 13:53:06 2005","No significant hits to the PDB database (E-value < E-10).","","","Residues 92 to 286 (E-value = 1.3e-15) place PG1383 in the VWA family which is described as von Willebrand factor type A domain (PF00092)","Mon May 14 15:40:37 MDT 2001","34541235","","","Tang YP, Dallas MM, Malamy MH.Characterization of the Batl (Bacteroides aerotolerance) operon in Bacteroides fragilis: isolation of a B. fragilis mutant with reduced aerotolerance and impaired growth in in vivo model systems.Mol Microbiol. 1999 Apr;32(1):139-49.PMID: 10216867","","Wed Mar 30 15:46:38 2005","1","","","PG1583" "PG1384","1661474","1662214","741","ATGAGAAATTCATGGCGATATGCCACCTTCATAACCTTCTTCATGCTTCTTGCTTCATCGAGCCTTTTGGCACAGAATATGCGAGAAGAAGTACGTCGGGCTCGACAAGTATATCGACGCCATCAATATGCCAATGCCGAGGTCGCATATCGCAAAGCTCTCTCCAAGGACAGTACTTTCACCGAGGCACGATTCGGTTTGGCCGGTACACAGTATGCACAAGGCCGCACCGATGAAGCTCTCCAAAACTATGCTGCTCTTGTACAAGACCCGACATTGACACCTAAGCGTAGAGCCGAACTGATGCACAATCTCGGCAACTCCTTTATGAAAAAGAAAGACTATCGGCAGAGTGTGGAGGCCTATAAGCATTCGCTCCGAATCAACCCGACCGATGAAGAGACTCGCTACAATCTGGCTTTGGCCATGAAGTTGCTTCAGAAACAGCAACAGCAAGGAGGAGGAGACAATCAGGATCAGAATAAGGAGAATAATCACGACAAAAAACAACCGCAAAACAATCCGAATAACAATAACCAGGGCGGACAGCAGCAGCCCCAACCGTCCAAACAGGACAATACACAAAAAGATCAACAGCCACGACAGAATGAAATGAGTCGTGAAAGTGCTGAAAAGATATTGAAAGCCTACGAACAGGACGAGGAGAAAACGCGCGAAAAAGTTGAGCAGATGCGTAAGCAGCGCATGAAGCAGCAAAAAGGTAATTCCACCAAGCAGTGG","10.70","14.97","29008","MRNSWRYATFITFFMLLASSSLLAQNMREEVRRARQVYRRHQYANAEVAYRKALSKDSTFTEARFGLAGTQYAQGRTDEALQNYAALVQDPTLTPKRRAELMHNLGNSFMKKKDYRQSVEAYKHSLRINPTDEETRYNLALAMKLLQKQQQQGGGDNQDQNKENNHDKKQPQNNPNNNNQGGQQQPQPSKQDNTQKDQQPRQNEMSRESAEKILKAYEQDEEKTREKVEQMRKQRMKQQKGNSTKQW","1661474 1662214","TIGR ID: PG1584From InterPro: IPR001440TPR repeat.The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins. It mediates proteinprotein interactions and the assembly of multiprotein complexes. The TPR motif consists of 316 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding.The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helixturnhelix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B.","bacteroides aerotolerance operon protein, batC","Periplasm, Outer membrane, Cytoplasm, Extracellular","This sequence corresponds to gi:34397552 in Genbank.Its nearest neighbor in the NR database is gi:53713708 from Bacteroides fragilis YCH46.","
InterPro
IPR001440
Repeat
Tetratricopeptide TPR_1
PF00515\"[38-60]T\"[99-132]TTPR_1
InterPro
IPR011990
Domain
Tetratricopeptide-like helical
G3DSA:1.25.40.10\"[26-151]TTPR-like_helical
InterPro
IPR013026
Domain
Tetratricopeptide region
SM00028\"[27-60]T\"[61-93]T\"[99-132]TTPR
PS50005\"[99-132]TTPR
PS50293\"[27-132]TTPR_REGION
noIPR
unintegrated
unintegrated
PTHR23083\"[73-143]TPTHR23083
PTHR23083:SF18\"[73-143]TPTHR23083:SF18
SSF48452\"[26-151]TSSF48452


","BeTs to 10 clades of COG0457COG name: TPR-repeat-containing proteinsFunctional Class: RThe phylogenetic pattern of COG0457 is AMTKYQVCEB-HUJ--OLINXNumber of proteins in this genome belonging to this COG is 21","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Wed Mar 30 15:48:25 2005","Wed Mar 30 14:03:57 2005","Wed Mar 30 14:07:14 2005","Thu Apr 11 16:05:19 2002","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 30 14:03:57 2005","-55% similar to PDB:2FO7 Crystal structure of an 8 repeat consensus TPR superhelix (trigonal crystal form) (E_value = 9.3E_13);-55% similar to PDB:1NA0 Design of Stable alpha-Helical Arrays from an Idealized TPR Motif (E_value = 3.5E_12);","","","Residues 99 to 132 (E-value = 1.4e-06) place PG1384 in the TPR family which is described as TPR Domain (PF00515)","Mon May 14 15:41:23 MDT 2001","34541236","","","D'Andrea LD, Regan L.TPR proteins: the versatile helix.Trends Biochem Sci. 2003 Dec;28(12):655-62.PMID: 14659697Tang YP, Dallas MM, Malamy MH.Characterization of the Batl (Bacteroides aerotolerance) operon in Bacteroides fragilis: isolation of a B. fragilis mutant with reduced aerotolerance and impaired growth in in vivo model systems.Mol Microbiol. 1999 Apr;32(1):139-49.PMID: 10216867Das AK, Cohen PW, Barford D.The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions.EMBO J. 1998 Mar;17(5):1192-9.PMID: 9482716Lamb JR, Tugendreich S, Hieter P.Tetratrico peptide repeat interactions: to TPR or not to TPR?.Trends Biochem Sci. 1995 Jul;20(7):257-9.PMID: 7667876Goebl M, Yanagida M.The TPR snap helix: a novel protein repeat motif from mitosis to transcription.Trends Biochem Sci. 1991 May;16(5):173-7.PMID: 1882418","","Wed Mar 30 15:48:25 2005","1","","","PG1584" "PG1385","1662398","1664197","1800","ATGACAAAGGTGCGATATATTCTTACAACCCTTTTCCTATGCCTCGCTTGGTGTACCCATGCGCAGGTTTCTTTCACTGTACAAGCTCCTGCGAGTGTGGCGATGGGAGAACAATTCAGAGTGAGTTTTACCCTCAAAGATGCTAATGGAACGGAATTCAAAGCTCCTGCCATGAGCGACTTTGAAGTCCTTTTTGGCCCGGCCACTGCTACAAGCTCATTCAGTTCCATTTCCAACGGCAAGACCACTTTGTCTCGAAGTATCACTTATACATATACCCTGATGCCCAAATCGGTCGGCACCTTTCAGATCGGTCCGGCCTCCATCCGTGCCAACGACCGAGATTATAAGACCAAGCAGGTATCCATCAAGGTGCTTCCGGCCGATAAAAAATCATCGAAAAATACTAAGTCTTCCTCTTCTTCCTCACGAGTCGATGCCGGTAGTTTGTwTGTCCGAACCATCATCAATAAGACCAAAGTGTACGAGCAGGAAGCGATCCTTGTTACTTATAAGCTCTACACCCTCCATCCCAATTTGCAGTTCGAGCAGGTCAAATTCCCCGAATACGAAGGATTTATCTCTCAAGATGTGGAAGACAATGCAGAGAAGCAGTATAGCCTTGAGAGTTATGAAGGACGGAACTATCAGACAGCCGTTCTCAAGCAGTCGTTGCTCTTTCCTCAAAAAAGCGGTAAGCTGACTATTCCATCGGGCAACTTTCGTGTCGTAGTAGCGGTCCGACGGGAGATAGACGACATAGATGACTTCTTTGTACTCCAGCCGTATGAGAATGTGCGGAGGACTCTGACCACCAATCCGGTCACAATAGATGTCGCTCCCTTGCCTGAACCGAAACCCCAAGGATTCGATGGTGCTGTTGGTAATTATCGGATCTCAGCCTCTTTCAATGACCGTCAGGCCAAAACAAACGAAGCCCTTACACTCAAGCTCGTAATTAACGGAAGCGGAAATATCAAGTTGATGGGAGATCCCAAAGTGAGATTTCCCGACAGCTTCGAACAATACGACTCCAAGGCCGAGAGCAGCCTTCGCATAAGTACTTCGGGTGCCGATGGACAGCGTACGATCGAGTATTATGTGGTACCCCGTCAGACGGGAAAGTTTACCATACCCGCCATAAGCATACCCTATTTCGACCCTGTATCCCGTTCTTACAAAACTGCTTCCACACAGGATTTCACTATTCAGGTAGCGAAGGGAAAAGGCGAGAGTGCTACCATGAGTGGCTCGGGATCCGACGCAGTCAAGATGTTGGGACAGGATATTCGTTACTTAAAGCCGCTTACAAGCTCTTCCTCTCCCTCTTCCTTCGCTTTTTCGGCCGCTTATTGGGGCATCTATCTTTTCTTGCTTCTGCTTGCACTCTTGTTGCTTTTCCTCTATCGTCGAAGGATGAAGATGATAGCCGACGAAGCCGGTATGCGATGGCGTAAGGCTAATAAAGTTGCTGTCAAACGTCTGCGACGAGCGGCCGAATATAAACAGAGCGAACGGGGCGATCTTTTCTACGAAGAGGTGCTTAGAGCCGTTTGGGGTTATTTGGGAGATAAACTGGGAATAGCCGTGTCGGAATTGAATAAGAATAATATCGCCGAACGACTTGCTCAAGCCGGTCATGTGCCTGAAACTCTTATCGAGGAGCTTATGCAACTGATCGAGACTTGCGAATTTGCCCGATATGCTCCTGAGAGCAATGAGCATGCGGCGATGGACTCCGTGTACGAACGTGTTTGCAGCATAATCGAACAGATTGACAGCACTAAAACCTTGAAAAGA","9.90","12.82","150089","MTKVRYILTTLFLCLAWCTHAQVSFTVQAPASVAMGEQFRVSFTLKDANGTEFKAPAMSDFEVLFGPATATSSFSSISNGKTTLSRSITYTYTLMPKSVGTFQIGPASIRANDRDYKTKQVSIKVLPADKKSSKNTKSSSSSSRVDAGSLXVRTIINKTKVYEQEAILVTYKLYTLHPNLQFEQVKFPEYEGFISQDVEDNAEKQYSLESYEGRNYQTAVLKQSLLFPQKSGKLTIPSGNFRVVVAVRREIDDIDDFFVLQPYENVRRTLTTNPVTIDVAPLPEPKPQGFDGAVGNYRISASFNDRQAKTNEALTLKLVINGSGNIKLMGDPKVRFPDSFEQYDSKAESSLRISTSGADGQRTIEYYVVPRQTGKFTIPAISIPYFDPVSRSYKTASTQDFTIQVAKGKGESATMSGSGSDAVKMLGQDIRYLKPLTSSSSPSSFAFSAAYWGIYLFLLLLALLLLFLYRRRMKMIADEAGMRWRKANKVAVKRLRRAAEYKQSERGDLFYEEVLRAVWGYLGDKLGIAVSELNKNNIAERLAQAGHVPETLIEELMQLIETCEFARYAPESNEHAAMDSVYERVCSIIEQIDSTKTLKR","1662398 1664197","TIGR ID: PG1585","bacteroides aerotolerance operon protein, batD","Outer membrane, Periplasm, Inner membrane","This sequence corresponds to gi:34397553 in Genbank.Its nearest neighbor in the NR database is gi:29338209 from Bacteroides thetaiotaomicron VPI-5482.This sequence is similar to BT0904.","
noIPR
unintegrated
unintegrated
signalp\"[1-21]?signal-peptide
tmhmm\"[448-468]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","Tue Feb 6 13:41:03 MST 2001","Tue Feb 6 13:41:03 MST 2001","","","Wed Mar 30 14:26:17 2005","Wed Mar 30 14:26:17 2005","Tue Feb 6 13:41:03 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 8 11:37:36 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon May 14 15:42:31 MDT 2001","34541237","","","Tang YP, Dallas MM, Malamy MH.Characterization of the Batl (Bacteroides aerotolerance) operon in Bacteroides fragilis: isolation of a B. fragilis mutant with reduced aerotolerance and impaired growth in in vivo model systems.Mol Microbiol. 1999 Apr;32(1):139-49.PMID: 10216867","","Wed Mar 30 15:50:04 2005","1","","","PG1585" "PG1386","1664197","1665102","906","ATGAGAACGCCTGTACTACGCCATATTGCGGTTTTACCCCTGATCCTTTTTCTGTCGATCGGCTCGTTGCTGTCATTGCAAGCACAAAACCAGGATACCTCCATTCGCCGGTCCGTATTCTTGCCGGTGGACTCTTCCTCGATCGCTACGTCGGAAGTAGAGACTGAATCGGCAGCCGATTCTTCGGCTACCGGAAAGATTTTATCCGCCGAGGAGATCCGTCGCTTGTTCGATGCCAAGCAATATGGCCGAGCTGCTACTGCATACGAACGAATCCTGCGCGAGACTGCCCAACCCGATGCTTCGTTGCTTTACAATCTCGGTTGCTGCTATTACAAGAGCGGTGAAGTGGCTCTTTCCATCCTTATGTTCGAACGGGCGTACCGACTGGCTCCGAATGACAAGGATATACGCGTCAATCTGGAAATGGCCGGACTCAAAGCCTTTGACAAGATCTCGGATAGTGAGAGTATTGCCGCCAAGCTCTGGCGACGTCTTTGCTATTCTGTCTCGTCGTGCGTAATCGTAGTGACGGGGATTATCTTCTTTATTATTTTACTCGGGAGCATTCTGCTTTTTCTGTTGGGAGGAAGCAGAAAGTTGCGGCGAGGAGGGTTCTATGCTGCTTGGGTCAGTTTGTTCTTTTGTATCCTGTTCAATTTAGCCGCTTTCCGCCGAAAAGCTGATTTCAATGACGATAGCTATTGCATCATGATGGCATCCGTAGCCAATGTCAAAAGCTCTCCGGACGAAAATGGCACGACCCTCTTTGAACTCCATGAAGGCGTGCGTGTTAGAATTACAGGGGAAGCTATCGACGGCTGGTACCCGATAGAACTGGCTGATGGCAAGGAAGGCTGGCTTCCTGCTACCGTCCTCACTCGTATTCATGTCTCTCCCGCAGAC","7.20","0.45","33429","MRTPVLRHIAVLPLILFLSIGSLLSLQAQNQDTSIRRSVFLPVDSSSIATSEVETESAADSSATGKILSAEEIRRLFDAKQYGRAATAYERILRETAQPDASLLYNLGCCYYKSGEVALSILMFERAYRLAPNDKDIRVNLEMAGLKAFDKISDSESIAAKLWRRLCYSVSSCVIVVTGIIFFIILLGSILLFLLGGSRKLRRGGFYAAWVSLFFCILFNLAAFRRKADFNDDSYCIMMASVANVKSSPDENGTTLFELHEGVRVRITGEAIDGWYPIELADGKEGWLPATVLTRIHVSPAD","1664197 1665102","TIGR ID: PG1586From InterPro: IPR001440TPR repeat.The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins. It mediates proteinprotein interactions and the assembly of multiprotein complexes. The TPR motif consists of 316 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding.The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helixturnhelix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ","bacteroides aerotolerance operon protein, batE","Inner membrane, Cytoplasm","This sequence corresponds to gi:34397554 in Genbank.Its nearest neighbor in the NR database is gi:53713706 from Bacteroides fragilis YCH46.","
InterPro
IPR001452
Domain
Src homology-3
SM00326\"[236-297]TSH3
SSF50044\"[235-296]TSH3
InterPro
IPR003646
Domain
Bacterial SH3-like region
SM00287\"[232-296]TSH3b
InterPro
IPR011990
Domain
Tetratricopeptide-like helical
G3DSA:1.25.40.10\"[76-144]TTPR-like_helical
InterPro
IPR013026
Domain
Tetratricopeptide region
PS50005\"[101-134]TTPR
PS50293\"[101-134]TTPR_REGION
InterPro
IPR013105
Repeat
Tetratricopeptide TPR_2
PF07719\"[101-134]TTPR_2
noIPR
unintegrated
unintegrated
SSF48452\"[71-141]TSSF48452


","BeTs to 6 clades of COG0457COG name: TPR-repeat-containing proteinsFunctional Class: RThe phylogenetic pattern of COG0457 is AMTKYQVCEB-HUJ--OLINXNumber of proteins in this genome belonging to this COG is 21","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Wed Mar 30 15:51:42 2005","Wed Mar 30 14:29:38 2005","Wed Mar 30 14:29:38 2005","Thu Apr 11 16:05:54 2002","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 30 14:29:38 2005","No significant hits to the PDB database (E-value < E-10).","","","Residues 101 to 134 (E-value = 5.8e-06) place PG1386 in the TPR family which is described as TPR Domain (PF00515)","Mon May 14 15:43:36 MDT 2001","34541238","","","D'Andrea LD, Regan L.TPR proteins: the versatile helix.Trends Biochem Sci. 2003 Dec;28(12):655-62.PMID: 14659697Tang YP, Dallas MM, Malamy MH.Characterization of the Batl (Bacteroides aerotolerance) operon in Bacteroides fragilis: isolation of a B. fragilis mutant with reduced aerotolerance and impaired growth in in vivo model systems.Mol Microbiol. 1999 Apr;32(1):139-49.PMID: 10216867Das AK, Cohen PW, Barford D.The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions.EMBO J. 1998 Mar;17(5):1192-9.PMID: 9482716Lamb JR, Tugendreich S, Hieter P.Tetratrico peptide repeat interactions: to TPR or not to TPR?.Trends Biochem Sci. 1995 Jul;20(7):257-9.PMID: 7667876Goebl M, Yanagida M.The TPR snap helix: a novel protein repeat motif from mitosis to transcription.Trends Biochem Sci. 1991 May;16(5):173-7.PMID: 1882418","","Wed Mar 30 15:51:42 2005","1","","","PG1586" "PG1387","1665126","1665839","714","ATGTTTTTGGAATACATTCTTGAAGTAGAAAGGAACCTCTTTTTGACTCTGAACGGAGTACAGCATCCTTTGTTGGACGGTTTTTTCTATTTGATCTCGGCCAAATGGACTTGGGTGATAATGTCCATCGCGTTTCTGTTCTTCCTTTTTTATAAGAAACCGACAAAGGAAGCTCTCTTCATCGTAGGAGCAGTCTTATTGAGCGTACTCATCTGCGATCAACTCTCCTCTTCTTTTTTCAAGCCTTTCTTCGCAAGATTCCGCCCTTCGCACCACCCTGATTTTATCGACTATGTGAAGACGGTCTACGGCTATCGGGGAGGAAAGTACGGATTTATCTCAGGGCATACGACGAACTACATATCGCTGGCATTATTTACGAGCCGTATTTTTCGGAATAAATTCTACACGTGGACGATCTGGAGCGTCGTCGCACTCGTCATCTATAGCCGTATTTATATCGGAGTGCATTTCATCACCGATATTATCCCGGGTATCGCCGTCGGACTTATCGTAGGACACTTTGTTTATAAAGTCTATCTGTATGCACGTTCCCGTTGGTTGGGAGCCTCATGCCCTGCCCATCCGTCGGCAGTCTATGCCGGCGATTCCATTCGGCTTTGGACACTTAGCCTCATCGGCTTTGTCTTTGCCATGCTGTGTATGTCCCGCCAGTTGACGGAGATACTACAGTACTATGTCTTCCTGCTCTTC","10.30","10.52","27608","MFLEYILEVERNLFLTLNGVQHPLLDGFFYLISAKWTWVIMSIAFLFFLFYKKPTKEALFIVGAVLLSVLICDQLSSSFFKPFFARFRPSHHPDFIDYVKTVYGYRGGKYGFISGHTTNYISLALFTSRIFRNKFYTWTIWSVVALVIYSRIYIGVHFITDIIPGIAVGLIVGHFVYKVYLYARSRWLGASCPAHPSAVYAGDSIRLWTLSLIGFVFAMLCMSRQLTEILQYYVFLLF","1665126 1665839","TIGR ID: PG1587","hypothetical protein","Inner membrane, Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR000326
Family
Phosphoesterase, PA-phosphatase related
PF01569\"[58-185]TPAP2
SM00014\"[61-177]TacidPPc
InterPro
IPR008934
Family
Acid phosphatase/vanadium-dependent haloperoxidase
SSF48317\"[6-188]TAcPase_VanPerase
noIPR
unintegrated
unintegrated
G3DSA:1.20.144.10\"[64-172]TG3DSA:1.20.144.10
PTHR14969\"[47-172]TPTHR14969
PTHR14969:SF3\"[47-172]TPTHR14969:SF3


","BeTs to 10 clades of COG0671COG name: Predicted phosphatasesFunctional Class: RThe phylogenetic pattern of COG0671 is -mtkYq-cEBrhUJ---l--xNumber of proteins in this genome belonging to this COG is 3","***** PF01569 (PAP2 superfamily) with a combined E-value of 3.9e-08. PF01569C 111-125 PF01569D 150-169","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Feb 22 14:47:23 MST 2001","","Thu Feb 22 14:47:23 MST 2001","Thu Feb 22 14:47:23 MST 2001","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","Residues 40 to 185 (E-value = 1.1e-11) place PG1387 in the PAP2 family which is described as PAP2 superfamily (PF01569)","Thu Feb 22 14:47:23 MST 2001","34541239","","","","","","1","","","PG1587" "PG1388","1666625","1665861","765","ATGTTTCTCCAGTTTACCATCAAGGATGTAATAGACATCCTGCTCGTGGCTTTATTCATCTATGCCGTTTATACCACTTTCAAGCACTCGGGCAGCAAGGCTCTTTTCTCGGGGATTCTCACCTTCTTCGTCATTTGGATCATCGTATCGCAGATATTCCAGCTGCGTCTGATGGGAGCCATCCTCAATCAGTTCGTCAGCTTGGGGTTCTTCGTACTGGTCATTCTTTTTCAGGGAGAGCTGCGCAAGATGCTCACGGCGATAGGCTCTACGCGCCGATGGCGTTCGCTCAAGCGTCTTCTCAATAAGGAAAAGCGCGAACAGGATTTGCAGGACGAACGCCGTATCATAGCTCCGCTCATGCTTGCCTGTATGAACATGGCTCGCAAGAAGACCGGCGCTCTCATCGCCATCCAGCAGGGAATAGACCTCACTCCGTTTGCCCATACGGGCGAAGTGTTCCGCGCCGAAGTAAATGCCCGTCTGGTCGAAAACATTTTCTTCAAAAACAGTCCGCTGCACGACGGTGCCATGGTGATTGCGGACAATAGCATCATTGCAGCCGGCTGTATCCTGCCGGTCGCATACAATACGGATCTGAACAAGGATTTGGGATTGCGCCACCGATCTGCTCTGGGTCTCTCGCAGGAGACGGATGCCAAGATCATTATTATCAGCGAAGAGAGAGGGCGGATTTCGTTCGCCTACCGTGGGGAGATTCATCAGGATATCACCACGGACGAACTACAGCTCCTCCTCGAAGAT","9.20","4.11","28875","MFLQFTIKDVIDILLVALFIYAVYTTFKHSGSKALFSGILTFFVIWIIVSQIFQLRLMGAILNQFVSLGFFVLVILFQGELRKMLTAIGSTRRWRSLKRLLNKEKREQDLQDERRIIAPLMLACMNMARKKTGALIAIQQGIDLTPFAHTGEVFRAEVNARLVENIFFKNSPLHDGAMVIADNSIIAAGCILPVAYNTDLNKDLGLRHRSALGLSQETDAKIIIISEERGRISFAYRGEIHQDITTDELQLLLED","1666625 1665861","TIGR ID: PG1588","conserved hypothetical protein","Inner membrane, Cytoplasm","This protein is similar to CT012, a hypothetical protein (1e-17).Numerous significant hits in gapped BLAST to conserved hypothetical protein; e.g. residues 7-254 are 35% similar to AP001507 of Bacillus halodurans, residues 2-254 are 33% similar to AB002150 of Bacillus subtilis, residues 3-255 are 34% similar to AE001864 of Deinococcus radiodurans.","
InterPro
IPR003390
Domain
Protein of unknown function DUF147
PF02457\"[120-241]TDUF147
InterPro
IPR014046
Family
Conserved hypothetical protein CHP00159
PIRSF004793\"[2-255]TUCP004793


","BeTs to 8 clades of COG1624COG name: Uncharacterized ACRFunctional Class: SThe phylogenetic pattern of COG1624 is am-k-q-c-B----gpolin-Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 75-253 are 32% similar to a (PROTEIN CONSERVED MG105 TRANSMEMBRANE) protein domain (PD006844) which is seen in Q45589_BACSU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon Apr 16 16:49:22 MDT 2001","Wed Jun 6 16:46:10 MDT 2001","Mon Apr 16 16:49:22 MDT 2001","","Mon Apr 16 16:49:22 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Apr 16 16:49:22 MDT 2001","-61% similar to PDB:2FB5 Structural Genomics; The crystal structure of the hypothetical membrane spanning protein from Bacillus cereus (E_value = 4.5E_18);","","","Residues 120 to 241 (E-value = 1.4e-37) place PG1388 in the DUF147 family which is described as Domain of unknown function DUF147 (PF02457)","Mon Apr 16 16:49:22 MDT 2001","34541240","","","","","","1","","","PG1588" "PG1389","1667531","1666689","843","ATGAAACGGAAGACTCTCAACCTCGGCGGCAGGCTTTTCAGCCTGGAAAAGCCCGTCGTAATGGGCATTATGAATATCACCCCCGATTCTTTTTACTCCGGCAGCCGCCTCTCGAGCGTGGACAGTGTGCGGAGTCGGGCACGCGAAATCGTCGAAGAAGGAGGGGCCTTGATCGACGTCGGTGCTTATTCCTCACGTCCTAATGCGGATCACATATCGGCACAGGAGGAAATGGAGCGACTGCGCCCGGCACTGAAAGTATTGCGGGATGAGTTTTCGGACATGCCGGTATCGGTGGATACCTTCCGTGCCGATGTGGCGAAGATGTGCGTAGAAGAGTACGGGGTAGCCATCGTCAACGATATTTCCGGCGGACAGCTCGACGGCGATATGTTCCGCACGGTGGCGGCTTTGCAAGTGCCCTATATCCTGATGCACATGCGCGGCACACCGGCTACGATGCAGAGCCTCACCGACTACGAAGACATTGCGGTAGATATACTGGATTACTTCGTGGAGCGTGTCGGAGAGCTGCGCGGATTGGGTCTGCACGACATTATCCTCGATCCGGGTTATGGTTTCAGCAAGACGCTGGAGCAGAATTACGAATTGCTATCGCGGCAGGAGGAGGCTTTCGGCGAGCTGGAGCTTCCCATCCTGGTCGGGATCTCGCGCAAGAGTATGATCTACAAACTATTCGGCACCACTCCGGAGGAGGCTCTCAACGGTACCACGGCACTGAATATGTACAGTGTCATGCATGGGGCGGACATTCTTCGGGTGCACGATGTGCGGGAAGCGGTGGAAGTATGCCGTATAGCCGACAAACTCGGCGTCGTCAAG","4.80","-11.87","31175","MKRKTLNLGGRLFSLEKPVVMGIMNITPDSFYSGSRLSSVDSVRSRAREIVEEGGALIDVGAYSSRPNADHISAQEEMERLRPALKVLRDEFSDMPVSVDTFRADVAKMCVEEYGVAIVNDISGGQLDGDMFRTVAALQVPYILMHMRGTPATMQSLTDYEDIAVDILDYFVERVGELRGLGLHDIILDPGYGFSKTLEQNYELLSRQEEAFGELELPILVGISRKSMIYKLFGTTPEEALNGTTALNMYSVMHGADILRVHDVREAVEVCRIADKLGVVK","1667618 1666689","TIGR ID: PG1589","dihydropterin pyrophosphokinase/dihydropteroate synthase","Cytoplasm","Numerous significant hits to dihydropteroate synthase (dihydropteroate pyrophosphorylase) in gapped BLAST; e.g. residues 11-277 are 45% similar to gb|AAD35134.1|AE001691_8 dihydropteroate synthase of Thermotoga maritima, residues 6-277 are 42% similar to dbj|BAA17275.1| dihydropteroate pyrophosphorylase of Synechocystis sp., residues 17-275 are 39% similar to gb|AAC07396.1| dihydropteroate synthase of Aquifex aeolicus.","
InterPro
IPR000489
Domain
Dihydropteroate synthase, DHPS
G3DSA:3.20.20.20\"[13-277]TDhdropt_synth
PF00809\"[23-233]TPterin_bind
PS50972\"[18-272]TPTERIN_BINDING
InterPro
IPR006390
Domain
Dihydropteroate synthase
TIGR01496\"[19-277]TDHPS
InterPro
IPR011005
Domain
Dihydropteroate synthase-like
SSF51717\"[4-277]TDHP_synth_like
noIPR
unintegrated
unintegrated
PTHR20941\"[40-277]TPTHR20941
PTHR20941:SF1\"[40-277]TPTHR20941:SF1


","BeTs to 11 clades of COG0294COG name: Dihydropteroate synthaseFunctional Class: HThe phylogenetic pattern of COG0294 is amtkyqvCebRHuj----in-Number of proteins in this genome belonging to this COG is 1","***** IPB000489 (Dihydropteroate synthase) with a combined E-value of 2.4e-53. IPB000489A 20-52 IPB000489B 54-84 IPB000489C 97-123 IPB000489D 179-197 IPB000489E 216-230 IPB000489F 239-264","Residues 21-275 are 42% similar to a (DIHYDROPTEROATE SYNTHASE DHPS PYROPHOSPHORYLASE) protein domain (PD001976) which is seen in DHPS_SYNY3.","","Thu Jun 14 11:53:57 MDT 2001","","Thu Jun 14 11:53:57 MDT 2001","Thu Jun 14 11:53:57 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:53:57 MDT 2001","Thu Jun 14 11:53:57 MDT 2001","","","Wed Mar 22 10:11:25 MST 2000","Mon Jun 25 16:32:09 MDT 2001","Mon Mar 19 16:39:12 MST 2001","Mon Jun 25 16:32:09 MDT 2001","Mon Jun 25 16:32:09 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Mar 19 16:39:12 MST 2001","-56% similar to PDB:1AJ0 CRYSTAL STRUCTURE OF A TERNARY COMPLEX OF E. COLI DIHYDROPTEROATE SYNTHASE (E_value = 2.6E_46);-56% similar to PDB:1AJ2 CRYSTAL STRUCTURE OF A BINARY COMPLEX OF E. COLI DIHYDROPTEROATE SYNTHASE (E_value = 2.6E_46);-56% similar to PDB:1AJZ STRUCTURE OF DIHYDROPTEROATE PYROPHOSPHORYLASE (E_value = 2.6E_46);-53% similar to PDB:1TWS Dihydropteroate Synthetase From Bacillus anthracis (E_value = 2.6E_38);-53% similar to PDB:1TWW Dihydropteroate Synthetase, With Bound Substrate Analogue PtPP, From Bacillus anthracis (E_value = 2.6E_38);","","","Residues 23 to 233 (E-value = 1.5e-73) place PG1389 in the Pterin_bind family which is described as Pterin binding enzyme (PF00809)","Mon Jun 25 16:32:09 MDT 2001","34541241","","","","","","1","","","PG1589" "PG1390","1668060","1669154","1095","ATGGATTTTAAAGACATCTTGAGGCAACTTTCAGAGAGAATCGAAAAACTTAGAGACAATTTGCAAACAGAGGAGGCAACGAAGAATGCACTTATCATGCCATTTATTCAGGCGATGGGATATGACGTGTTTAATCCGTTGGAAGTTATTCCGGAATTTACTTGCGATATAGGCACAAAAAAGGGAGAGAAGATTGATTATGCAATTATGCGTGATAATGAACCCATCATTTTGATTGAGTGCAAACATTGGCGCGATACCCTTACTCTTGCCGATAATCAACTATTAAGGTACTTTCATGTTTCGTCTGCAAAATTCGGGATGCTAACTAACGGTATCATCTATCGCTTCTATACAGACTTGGATCAAGCTAATAAAATGGATGAAAAACCTTTCCTTGAAGTTAATATGCTTGACCTACGAGATAATCAAATAGAAGAACTCAAACAATTTCATAAGTCATACTTCGATGTTGATAAGATTCTAAGTACTGCTAGTGAACTTAAGTATATGAAAGAGTTGAAAGATTTGATACTTGCAGAAATGAATGAGCCCTCTGAACAGTTTGTAAGAATGCTCGCAAAACAAGTTTATGACGGAATTATTACAGCAAAGATTTTTGAACAATTCAAGGATCTTACACAGAAGTCTTTCAAATCTGTTATTAATGATTTGATTACTGCTCGATTTAAAACGGTAATGGATAAAAGTAAAGAAGTCGCTGCGAGTGAGGAGCAATCACAAGAGCAAGATGATTCTAATGAACCTCTTGTTGTAACGACCGAAGCAGAGATGGAAGCATATATGATTGTAAAAGGAATTCTCCGGAAATATATCAATATTGACCGTATTGCCTCAAGAGACACTCAGTCTTACTTTAGCGTCCTTTTAGATGACAACAACAGAAAACCTATCTGTAGGTTCTACTTTAACACTGCAAACAAATATCTCGCCACTTTCGAAGAAGGGAAAAAAGAAGTAAAAACTCTCCTTAATTCTCTCGATGACCTTTTCATGCATGAAAAGTCTATCGCAAAATCATTGGCATTATACGTTGACACAGAAGAATCAGCATTGATCGTTAAGAGTAAAGAG","4.80","-13.13","42564","MDFKDILRQLSERIEKLRDNLQTEEATKNALIMPFIQAMGYDVFNPLEVIPEFTCDIGTKKGEKIDYAIMRDNEPIILIECKHWRDTLTLADNQLLRYFHVSSAKFGMLTNGIIYRFYTDLDQANKMDEKPFLEVNMLDLRDNQIEELKQFHKSYFDVDKILSTASELKYMKELKDLILAEMNEPSEQFVRMLAKQVYDGIITAKIFEQFKDLTQKSFKSVINDLITARFKTVMDKSKEVAASEEQSQEQDDSNEPLVVTTEAEMEAYMIVKGILRKYINIDRIASRDTQSYFSVLLDDNNRKPICRFYFNTANKYLATFEEGKKEVKTLLNSLDDLFMHEKSIAKSLALYVDTEESALIVKSKE","1668021 1669154","TIGR ID: PG1591","conserved hypothetical protein","Cytoplasm","Residues 1-254 have 32% similarity to AE001183, hypothetical protein of B. burgdorferi. Residues 7-137 are 28% similar to (AP000061) hypothetical protein, Aeropyrum pernix.","
InterPro
IPR007409
Domain
Type I restriction enzyme R protein N terminus
PF04313\"[21-126]THSDR_N


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 1-224 are 32% similar to a (HYPOTHETICAL 46.2 KD PROTEIN) protein domain (PD138651) which is seen in O51791_BORBU.","","Thu Jun 14 11:54:08 MDT 2001","","Thu Jun 14 11:54:08 MDT 2001","Thu Jun 14 11:54:08 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:54:08 MDT 2001","Thu Jun 14 11:54:08 MDT 2001","","","Thu Feb 22 14:53:32 MST 2001","Mon Jun 25 16:34:41 MDT 2001","Thu Feb 22 14:53:32 MST 2001","","Mon Jun 25 16:34:41 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Jun 14 11:54:08 MDT 2001","-43% similar to PDB:1J7N Anthrax Toxin Lethal factor (E_value = );-43% similar to PDB:1JKY Crystal Structure of the Anthrax Lethal Factor (LF): Wild-type LF Complexed with the N-terminal Sequence of MAPKK2 (E_value = );-43% similar to PDB:1PWP Crystal Structure of the Anthrax Lethal Factor complexed with Small Molecule Inhibitor NSC 12155 (E_value = );-43% similar to PDB:1PWQ Crystal structure of Anthrax Lethal Factor complexed with Thioacetyl-Tyr-Pro-Met-Amide, a metal-chelating peptidyl small molecule inhibitor (E_value = );-43% similar to PDB:1PWU Crystal Structure of Anthrax Lethal Factor complexed with (3-(N-hydroxycarboxamido)-2-isobutylpropanoyl-Trp-methylamide), a known small molecule inhibitor of matrix metalloproteases. (E_value = );","","","Residues 21 to 126 (E-value = 9e-25) place PG1390 in the HSDR_N family which is described as Type I restriction enzyme R protein N terminus (HSDR_N) (PF04313)","Mon Jun 25 16:34:41 MDT 2001","34541242","","","","","","1","","","PG1591" "PG1391","1669526","1671595","2070","ATGAAAATTCAGTACAAATCGTTGGTCTTCTTTTTCCTGACGGCAATGATGCTCACGCTTTTCGCCCCACAGGAACTGAAGTTCAAATACCAATTCTATCGTGGCAAACCATGGCAATATGAACTGCTCACGGCTCCTTATGATTTCCTCATATACAAGCCTCAGGTGATACTCGATGCCGAGCGCGACAGTCTGCGCAGTACCATCAAACCATATTTCACCATGGACGAAACGATCGGTGCAAAGATGCAGATGGCCTGGCGCAACGATTATGACAAGAACCTCAAGGGCAGATTGTCGCCAGTGTACGATCACTACGTCGTCGATTTCCTGCGCAATATATACCGGCAAGGCCTTATCAGCAATGAGGATAGCAAAGCTCTCCATGCCGATGATGTGATGGAGATTAACCTCTTACAAGCCGATCGAAGCTCGAATCGCGAGCCCCTTACACGTTTCTACACGCTCAAGGAGGCTTATGAAATGTTCGTGGAAGAGGCTCCGTCCGGGTTGGATCGGGAAGTTCTTCGCGGACTGAACCTGACCAACTACTTGCGAGTGAATCTCACGGAAAGCCCCGAAATGCACAGACAGGTGGTACAGGAAGAGCTACAGAATCTATCGGTATCGACCGGAATGATACAGGCCGGCGAACGTATAATCGGTACGGGTGAGATTGTAGACGCCTATACCTATAATGTCCTTCAGTCGTTCAAGAAGACCTATGAAGAGCGTTCGGGAGGTACGACCCTCAGATTTACACGCAATCTCGGCATCTTTCTGATTATCTTCTTCCTGCTGCTGGCTCTTTGGGCTTATATGCTCTCGTTCCGACCTGTATTTTTCGATCGGCTGCACAATTCCTTCTTTGTACTTTCGCTCATTCTGGTGATCAATCTGATTACAGAGTTGGCTATCAGCTTCGGATGGTTCAATATCTATATTATCCCTTTTATCATTCTGCCCATTCTGGTACGTACGTTCCATGATTCGCGCACGGCATTTTTTGCCCATGTGATCAACGTACTGATCGTTGCCATGTTCGTGCCGGACATTTACGAGTTTATCCTCTTGCAAGTGCTGGCCGGTATCGTGTCTGTGACCAGTATGCGCCGTCTGACATCACGCCTGCAGTTGGTTCGGACGACCTTTTTGGTTTTCCTCACTTATTCCGTCGTACAGCTTTCGTTCTCGCTGATGCAGGACGGTCGGGTAGAGATGGGAGACGGGCTGAACATTCTCTATTTCGGTGTGAATCTGATCTTCCTCATGTTCAGCTACCTGCTCGTCTATCTGATGGAGCGTGCTTTCGGCTACGTTTCCAATATCAGTTTGGTTGAGCTGAGCGACGTCAATACGCCGCTGCTCAGTCAGCTCTCGGAGGTGGCGCCGGGCACCTTTCAGCATTCGATCCAAGTGTCCATCCTCGCTACGGAGGCAGCCACCAAGATCGGAGCAGATGTACAGCTTGTACGCACCGGTGCTCTCTATCATGATATAGGAAAAATGAAGAACCCATCTTATTTCACAGAGAATCAGGGAGCAGAGAATCCGCACTCCAAATTGCCTTTTGACGAGAGTGCTCGCATTATCATTCGTCATGTGACCGATGGTATTGCCTTGGCGCAGAAACACCGTTTGCCGGACTCCGTTATCGATTTTATCCGGACGCATCACGGACGGGGTAAGACCAAATACTTCTATAATTCCTATTGCAATCAGTATCCCGACAAAGAGGTGGATCCGGAGTTGTTCACTTATCCCGGGCCGAATCCATTCAGCAAGGAGACCGGTATACTGATGATGGCAGACGCCATCGAAGCATCGAGTCGAAGCCTCAGCCGCCATACCGAAGAGGGTATCAAGCAACTTATCGACAAGATAGTCGATGGCATCTTACAGGACGGTTTGCTGGTGGATACACCTCTTACATTCAAGGATATTCGTGTCTGCAAGGAAGTTTTCTTCGAGAAGATCAAGATCATGTACCATTCACGCATCACCTATCCCGAGTTGAAGAAGAAAGCTCCGGAAGGTGAGAGCACCACCGAAGAGACACAAGGAGCCGTC","6.60","-3.42","79400","MKIQYKSLVFFFLTAMMLTLFAPQELKFKYQFYRGKPWQYELLTAPYDFLIYKPQVILDAERDSLRSTIKPYFTMDETIGAKMQMAWRNDYDKNLKGRLSPVYDHYVVDFLRNIYRQGLISNEDSKALHADDVMEINLLQADRSSNREPLTRFYTLKEAYEMFVEEAPSGLDREVLRGLNLTNYLRVNLTESPEMHRQVVQEELQNLSVSTGMIQAGERIIGTGEIVDAYTYNVLQSFKKTYEERSGGTTLRFTRNLGIFLIIFFLLLALWAYMLSFRPVFFDRLHNSFFVLSLILVINLITELAISFGWFNIYIIPFIILPILVRTFHDSRTAFFAHVINVLIVAMFVPDIYEFILLQVLAGIVSVTSMRRLTSRLQLVRTTFLVFLTYSVVQLSFSLMQDGRVEMGDGLNILYFGVNLIFLMFSYLLVYLMERAFGYVSNISLVELSDVNTPLLSQLSEVAPGTFQHSIQVSILATEAATKIGADVQLVRTGALYHDIGKMKNPSYFTENQGAENPHSKLPFDESARIIIRHVTDGIALAQKHRLPDSVIDFIRTHHGRGKTKYFYNSYCNQYPDKEVDPELFTYPGPNPFSKETGILMMADAIEASSRSLSRHTEEGIKQLIDKIVDGILQDGLLVDTPLTFKDIRVCKEVFFEKIKIMYHSRITYPELKKKAPEGESTTEETQGAV","1669514 1671595","TIGR ID: PG1592","conserved hypothetical protein","Inner membrane, Cytoplasm","Residues 93-675 have 28% similarity to D84432 B. subtilis hypothetical protein yqfF. Residues 180-670 have 31% similarity to AE001239, T. pallidum conserved hypothetical integral membrane protein. Residues 188-679 have 29% similarity to AP001511, B. halodurans unknown conserved protein.This sequence is similar to BT2749.","
InterPro
IPR003607
Domain
Metal-dependent phosphohydrolase, HD region
SM00471\"[462-618]THDc
InterPro
IPR006674
Domain
Metal-dependent phosphohydrolase, HD region, subdomain
PF01966\"[466-609]THD
InterPro
IPR006675
Domain
HDIG
TIGR00277\"[462-561]THDIG
InterPro
IPR011621
Domain
Metal-dependent phosphohydrolase, 7TM intracellular region
PF07698\"[253-441]T7TM-7TMR_HD


","BeTs to 5 clades of COG1480COG name: Uncharacterized membrane proteinFunctional Class: SThe phylogenetic pattern of COG1480 is ------vc-b-------l-n-Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 353-670 are 36% similar to a (PROTEIN CONSERVED MEMBRANE TRANSMEMBRANE INTEGRAL) protein domain (PD043866) which is seen in YQFF_BACSU.","","Thu Jun 14 11:54:33 MDT 2001","","Thu Jun 14 11:54:33 MDT 2001","Thu Jun 14 11:54:33 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:54:33 MDT 2001","Thu Jun 14 11:54:33 MDT 2001","","","Thu Feb 22 15:01:42 MST 2001","Fri Dec 19 09:59:35 2003","Thu Feb 22 15:01:42 MST 2001","","Mon Jun 25 16:37:44 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Jun 14 11:54:33 MDT 2001","-46% similar to PDB:1YUO Optimisation of the surface electrostatics as a strategy for cold adaptation of uracil-DNA N-glycosylase (UNG)from atlantic cod (Gadus morhua) (E_value = );-46% similar to PDB:1AKZ HUMAN URACIL-DNA GLYCOSYLASE (E_value = );-46% similar to PDB:1EMH CRYSTAL STRUCTURE OF HUMAN URACIL-DNA GLYCOSYLASE BOUND TO UNCLEAVED SUBSTRATE-CONTAINING DNA (E_value = );-46% similar to PDB:1EMJ URACIL-DNA GLYCOSYLASE BOUND TO DNA CONTAINING A 4'-THIO-2'DEOXYURIDINE ANALOG PRODUCT (E_value = );-46% similar to PDB:1Q3F Uracil DNA glycosylase bound to a cationic 1-aza-2'-deoxyribose-contianing DNA (E_value = );","","","Residues 466 to 609 (E-value = 1.9e-21) place PG1391 in the HD family which is described as HD domain (PF01966)","Mon Jun 25 16:37:44 MDT 2001","34541243","","","","","","1","","","PG1592" "PG1392","1671646","1672203","558","ATGCACGCTCCGATTTTTATCGTTGGCTATATGGGTTCCGGCAAGAGTACGGTAGGGCGTAAGATGGCCGATGTACTCGGTTGGCGTTTTATCGATACGGATTTCTTTATCGAGAACCGATTCCGCAAGCGCGTGGCGGATATATTCCGTGACGAAGGCGAGGCGGTTTTTCGCAGGCGCGAGCGTGTCGTCATCGAAGAACTATCCGGAATGGAGGATGCTATTATCGCCACAGGGGGCGGATTGCCCTGTCATTCGGACAATATGACGCTGATGAACGAAGCCGGCTTGACGCTGTATTTGGAAGTTTCGGATGAGGTTCTTGCCGTTCGTTTGGAGCTGTGCAAGCGGACAAGGCCGAAGGTGAAAGACAAGACCGGCGAAGAGCTGCTCTCCCACATCCGGGAGGAAATGGCTTTCCGAGGCGATATATATCGCCGTGCAAAGGTGATTGTAAATAGCGACAAGCTGGTGGATGAAGAGGATGAGAGACAGCTTGTCACTCGTATCGTCGCCGATTTGCGCGCCAAAGGATACCTACCGCAAGCAATACAGCCA","6.30","-1.36","21231","MHAPIFIVGYMGSGKSTVGRKMADVLGWRFIDTDFFIENRFRKRVADIFRDEGEAVFRRRERVVIEELSGMEDAIIATGGGLPCHSDNMTLMNEAGLTLYLEVSDEVLAVRLELCKRTRPKVKDKTGEELLSHIREEMAFRGDIYRRAKVIVNSDKLVDEEDERQLVTRIVADLRAKGYLPQAIQP","1671646 1672203 [Shorter 1787 56 42]","TIGR ID: PG1593","shikimate kinase","Cytoplasm","Several significant hits and numerous weak hits to shikimate kinase proteins in gapped BLAST; e.g. residues 5-148 have 34% similarity to D90900, Synechocystis sp. shikimate kinase, residues 1-144 have 31% similarity to X14777, E. chrysanthemi shikimate kinase, residues 5-113 have 36% similarity to AL139075, C. jejuni shikimate kinase.","
InterPro
IPR000623
Domain
Shikimate kinase
PR01100\"[5-20]T\"[29-42]T\"[57-65]T\"[75-84]T\"[96-113]TSHIKIMTKNASE
PF01202\"[11-171]TSKI
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[1-175]TG3DSA:3.40.50.300
PTHR21087\"[5-174]TPTHR21087
SSF52540\"[5-170]TSSF52540


","BeTs to 9 clades of COG0703COG name: Shikimate kinaseFunctional Class: EThe phylogenetic pattern of COG0703 is ----yqvcEBrhuj----in-Number of proteins in this genome belonging to this COG is 1","***** IPB000623 (Shikimate kinase) with a combined E-value of 5e-22. IPB000623A 5-38 IPB000623B 53-70","Residues 5-134 are 35% similar to a (SHIKIMATE KINASE AROMATIC AMINO ACID BIOSYNTHESIS) protein domain (PD004326) which is seen in AROK_SYNY3.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon Mar 19 16:59:08 MST 2001","Mon Mar 19 16:59:39 MST 2001","Thu Feb 22 15:08:13 MST 2001","Thu Feb 22 15:08:13 MST 2001","Thu Feb 22 15:08:13 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Mar 9 15:56:41 MST 2001","-50% similar to PDB:1SHK THE THREE-DIMENSIONAL STRUCTURE OF SHIKIMATE KINASE FROM ERWINIA CHRYSANTHEMI (E_value = 2.0E_13);-50% similar to PDB:2SHK THE THREE-DIMENSIONAL STRUCTURE OF SHIKIMATE KINASE FROM ERWINIA CHRYSANTHEMI COMPLEXED WITH ADP (E_value = 2.0E_13);-53% similar to PDB:1VIA Crystal structure of shikimate kinase (E_value = 4.5E_13);-49% similar to PDB:1E6C K15M MUTANT OF SHIKIMATE KINASE FROM ERWINIA CHRYSANTHEMI (E_value = 7.6E_13);","","","Residues 3 to 175 (E-value = 4.3e-34) place PG1392 in the SKI family which is described as Shikimate kinase (PF01202)","Mon May 14 15:49:15 MDT 2001","34541244","","","","","","1","","","PG1593" "PG1393","1673680","1672148","1533","GTGCCGGTCTGCCCGAAGCCGTATTTTCGCCCCGGACCGTTTCTGTGGGTATTGCTTTTCCTGTCGACAGGCATAGGCCTGACGGAATACTTTCGCTCTCCTGTCGTTGCGCTTGGTGCGCTGACGACAGGATTTTTTCTTTATATCCTCAGTCTCTTTTTCCGGCCGGCCGTTGAGAAAAGGACTGTCGCGGCTCTTCGTTTCGCCCCGATCGGCCTGCTTCTCGTTGCTGCGGGAGCTTTCTCCATACAGCTGACACGAGAGCGACTGACAGCTACTTCACGCTACAAGCTGTCTTCATCCGACACTTTTCGGGTCATCGGGAATCCGGAGCCACGCGAGGGCAAACTGCGAATGCAGGTACAACTGACAGGAGGCTCCTCCCCATCTTATATCCTGTACATCCGACACGAAGGGGAATACGAGCCGGTCGCTCGCGGCGATATGCTCAAGCTTAGGAAATTCTATGCCCGATCGGTCGAAGAATGGGAGCAGAAAGCTCCGGCAATGGGGCGGTATATGGCGGGCAAAGGACTGTCCGGCAGTCTGCATGCCAAGACCGGAGATGTAGAAATCTTGTCGACAGCCAAAGGGCCGTTCTCCCTCAGGCAAAAGGCTTTGGATCTGTCGGATCGCTTGGCTGCCACATTGTACGAACTCTCCCCTTCGCTACTGTCCGATTCGCGGCGTGCGATGCTCGAAGCCATGTGTCTGGGGCGTGAGGGCGAAGCTCCCGACGTTCGCCGCAAGTTCGTCGCGGCAGGCGTGGCACATATCCTTGCTGTGAGCGGTTTTCACGTGGGTATCGTATTGGCTGCCCTCGGTTTTCTCATGCGTATTCTGCCGATACCGCAGCGATGGCGTCGGGCAGAGTGGCTGCTTCCGCTTGCAGGGGGATGGATATACGCATTCGTTTGCGGTTTGGGTGCTCCTGTAGTCCGAGCCATGCTGATGGCTACCTTATATATAGTCGGTAAATGCTCGGGCAGACCGACGGATGGATTGAATGTTTGGGCTGCGGCAGCGTCCATTACACTCGTGATCGATCCCCTCTCTTTTTATGACGTGGGATTTGTGCTCAGCTATGCCGCGGTAGCTTCTATCCTGATCTTCTTCAGACCGCTGGCGTCCTTACTCCCCGATGTGCGGCAGCCTCTTCTTCGTCTGTGTCGTGATGCTATGGTGCTATGCCTCGCAGCACAGGCTTTCACCCTGCCGTTGGCGGCACATTATTTCGGACATGTCGGCATTATTTTCCTTTGGGTCAATCTTCCGCTTACCCTGCTGGTCGTTTTTCTGATTCCCCTTAGCCTTATTTATATGGTCTTGGCAGCTGTCGGATTACCCTTGATGTTGTTGTCCCGAGTGGTCGGTATTTGTGCCGATGGAGTGGAGAGATTGGTTACTGCGGCGGCGGCTGTGTCGCCGAGCATGGAATACGCCTGGCAACCTTCGATGTCGGTCGTACTATGTATTATGGCTGTATTGCTTGCGGTAGGTATCCTTTGGCGCGCAAATCGGCGACGATACGAG","10.50","20.08","55974","VPVCPKPYFRPGPFLWVLLFLSTGIGLTEYFRSPVVALGALTTGFFLYILSLFFRPAVEKRTVAALRFAPIGLLLVAAGAFSIQLTRERLTATSRYKLSSSDTFRVIGNPEPREGKLRMQVQLTGGSSPSYILYIRHEGEYEPVARGDMLKLRKFYARSVEEWEQKAPAMGRYMAGKGLSGSLHAKTGDVEILSTAKGPFSLRQKALDLSDRLAATLYELSPSLLSDSRRAMLEAMCLGREGEAPDVRRKFVAAGVAHILAVSGFHVGIVLAALGFLMRILPIPQRWRRAEWLLPLAGGWIYAFVCGLGAPVVRAMLMATLYIVGKCSGRPTDGLNVWAAAASITLVIDPLSFYDVGFVLSYAAVASILIFFRPLASLLPDVRQPLLRLCRDAMVLCLAAQAFTLPLAAHYFGHVGIIFLWVNLPLTLLVVFLIPLSLIYMVLAAVGLPLMLLSRVVGICADGVERLVTAAAAVSPSMEYAWQPSMSVVLCIMAVLLAVGILWRANRRRYE","1673680 1672148 [Bad Olap 1785 56 40]","TIGR ID: PG1594","possible competence protein","Inner membrane, Cytoplasm","Residues 214-452 have 27% similarity to D90729, E. coli hypothetical protein.Residues 225-447 have 32% similarity to AE002025,D. radiodurans putative competence protein ComEC/Rec2.Residues 232-452 have 28% similarity to AE002425, N. meningitidis competence protein ComA.","
InterPro
IPR004477
Domain
ComEC/Rec2-related protein
PF03772\"[238-506]TCompetence
TIGR00360\"[256-437]TComEC_N-term: ComEC/Rec2-related protein
noIPR
unintegrated
unintegrated
signalp\"[1-28]?signal-peptide
tmhmm\"[12-30]?\"[34-54]?\"[63-83]?\"[257-277]?\"[292-312]?\"[352-372]?\"[393-411]?\"[417-437]?\"[442-462]?\"[481-503]?transmembrane_regions


","BeTs to 11 clades of COG0658COG name: Uncharacterized BCR, ComEC familyFunctional Class: SThe phylogenetic pattern of COG0658 is -----qvcebrhujgpolin-Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 214-369 are 28% similar to a (PROTEIN COME TRANSPORT TRANSMEMBRANE) protein domain (PD006990) which is seen in YCAI_ECOLI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Fri Jun 15 11:23:06 MDT 2001","Thu Feb 22 15:14:39 MST 2001","Thu Feb 22 15:14:39 MST 2001","","Thu Feb 22 15:14:39 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon May 14 15:57:43 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 238 to 506 (E-value = 3.1e-34) place PG1393 in the Competence family which is described as Competence protein (PF03772)","Mon May 14 15:57:43 MDT 2001","34541245","","","","","","1","","","PG1594" "PG1394","1674343","1673690","654","ATGCAACCTATCGTATCTCCATCTTTGCTGTCGGCCGACTTCCTGCATCTGGCCGACGATGTCGAAATGATCAATCGCAGCGAGGCCGACTGGCTGCATATCGACGTCATGGATGGCGTATTCGTCCCCAATCTTTCGTTCGGTTTTCCCATTCTCGAGGCTATCCGACCGATTTGCAAGAAGCCGCTCGATGTTCACCTGATGATCGTGGAGCCGATGAAGTTCGTGGACAGGTTGGCCGAACTGGGCGTTTATATGATGAACGTCCACTATGAAGCCAGTCCGCACCTGCATCGCTCACTGGCGGCGATTCGCAAGGCCGGCATGAAATCGGGCGTCACGCTCAATCCGCATACTCCCGTGGAGGTGCTGACCGACGTGCTGGAAGAGGCCGATATGGTGCTTCTGATGAGCGTAAACCCGGGATTCGGAGGGCAGAAATTCATCGAAAGGACGATAGACAAGACGCAACGCCTGCGCCGAATGATCGATAGCCAAGGTCTGGATACGATTGTTCAGATCGACGGCGGTGTCAATGCCGCCACGGGAAAACGTCTGATCGAAGCAGGAGCCGATTCGCTCGTAGCCGGCAGCTATGTGTTCGGAGCAGAGAAGCCGGAAGAAGCCATCAGTCTGCTGAAGAGTTATAGCCGT","5.40","-6.36","24025","MQPIVSPSLLSADFLHLADDVEMINRSEADWLHIDVMDGVFVPNLSFGFPILEAIRPICKKPLDVHLMIVEPMKFVDRLAELGVYMMNVHYEASPHLHRSLAAIRKAGMKSGVTLNPHTPVEVLTDVLEEADMVLLMSVNPGFGGQKFIERTIDKTQRLRRMIDSQGLDTIVQIDGGVNAATGKRLIEAGADSLVAGSYVFGAEKPEEAISLLKSYSR","1674532 1673690","TIGR ID: PG1595","D-ribulose-phosphate-3 epimerase (pentose-5-phosphate-3-epimerase)","Cytoplasm","This sequence is similar to CT121.Numerous significant hits to ribulose-phosphate 3-epimerase (pentose-5-phosphate-3-epimerase) in gapped BLAST; e.g. residues 4-218 are 49% similar to dbjBAA18137.1 pentose-5-phosphate-3-epimerase of Synechocystis sp., residues 5-214 are 50% similar to pirB69879 ribulose-5-phosphate 3-epimerase homolog of Bacillus subtilis, residues 5-210 are 49% similar to dbjBAB06221.1 ribulose-phosphate 3-epimerase of Bacillus halodurans.","
InterPro
IPR000056
Family
Ribulose-phosphate 3-epimerase
PTHR11749\"[15-215]TRibul_P_3_epim
PF00834\"[4-204]TRibul_P_3_epim
TIGR01163\"[4-214]Trpe
PS01085\"[32-46]TRIBUL_P_3_EPIMER_1
InterPro
IPR003733
Domain
Thiamine monophosphate synthase
PD149806\"[89-207]TTMP_synthase
InterPro
IPR011060
Domain
Ribulose-phosphate binding barrel
SSF51366\"[1-218]TRibP_bind_barrel
InterPro
IPR013785
Domain
Aldolase-type TIM barrel
G3DSA:3.20.20.70\"[4-214]TAldolase_TIM


","BeTs to 12 clades of COG0036COG name: Pentose-5-phosphate-3-epimeraseFunctional Class: GThe phylogenetic pattern of COG0036 is -m--yqvcEbrhujgp-lin-Number of proteins in this genome belonging to this COG is 1","***** IPB000056 (Ribulose-phosphate 3-epimerase family) with a combined E-value of 1e-78. IPB000056A 5-14 IPB000056B 28-49 IPB000056C 62-92 IPB000056D 96-150 IPB000056E 172-201","Residues 4-155 are 53% similar to a (3-EPIMERASE ISOMERASE CARBOHYDRATE) protein domain (PD003683) which is seen in RPE_SYNY3.","","Thu Jun 14 11:54:44 MDT 2001","","Thu Jun 14 11:54:44 MDT 2001","Thu Jun 14 11:54:44 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:54:44 MDT 2001","Thu Jun 14 11:54:44 MDT 2001","","","Mon Mar 19 17:15:00 MST 2001","Tue Jul 29 17:18:55 2008","Mon Mar 19 17:15:00 MST 2001","Mon Jun 25 16:39:37 MDT 2001","Mon Jun 25 16:39:37 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Jul 29 17:18:55 2008","-72% similar to PDB:1TQJ Crystal structure of D-ribulose 5-phosphate 3-epimerase from Synechocystis to 1.6 angstrom resolution (E_value = 2.0E_58);-68% similar to PDB:1RPX D-RIBULOSE-5-PHOSPHATE 3-EPIMERASE FROM SOLANUM TUBEROSUM CHLOROPLASTS (E_value = 3.4E_53);-66% similar to PDB:2FLI The crystal structure of D-ribulose 5-phosphate 3-epimerase from Streptococus pyogenes complexed with D-xylitol 5-phosphate (E_value = 1.6E_47);-64% similar to PDB:1H1Y THE STRUCTURE OF THE CYTOSOLIC D-RIBULOSE-5-PHOSPHATE 3-EPIMERASE FROM RICE COMPLEXED WITH SULFATE (E_value = 1.3E_41);-64% similar to PDB:1H1Z THE STRUCTURE OF THE CYTOSOLIC D-RIBULOSE-5-PHOSPHATE 3-EPIMERASE FROM RICE COMPLEXED WITH SULFATE AND ZINC (E_value = 1.3E_41);","","","Residues 4 to 204 (E-value = 2.6e-105) place PG1394 in the Ribul_P_3_epim family which is described as Ribulose-phosphate 3 epimerase family (PF00834)","Mon Jun 25 16:39:37 MDT 2001","34541246","","","","","","1","","","PG1595" "PG1395","1674686","1678096","3411","ATGAGTCGCAGATTTGCCGAATACGAGAGCTTGGATTTGTCCCGTGTCAATGAGGAGGTGTTGGCCGATTGGATGCAACACCGTCTTTTTGAAGAAAGTCTGAAAAGTCGCGAGGGTGCCCCCTCGTTCGTTTTTTATGAGGGACCTCCCTCTGCCAACGGGATGCCCGGCATCCACCACGTAATGGCTCGTGCCATCAAGGACACTATTTGTCGTTACAAGACGATGAAGGGTTTCCGAGTGGACAGGAAAGCCGGCTGGGATACTCACGGCCTGCCTGTAGAGCTGGGAGTGGAAAAAAGTCTGGGCATAACGAAAGAGGACATCGGCAAATCGATCTCCGTGGAAGAGTACAATGCTGCCTGCCGGCGCGATGTGATGAAGTTCACCAAGGAGTGGGAAGACCTCACGCACAAGATGGGCTACTGGGTAGATATGGAGCACCCCTACATCACGTACGACAACCGCTATATCGAGACGCTTTGGTGGCTGCTGGCCGAGCTATACAAGAAAGGTCTGCTCTACAAAGGCTATACGATCCAACCCTATTCGCCTGCGGCGGGTACCGGTCTGAGCACGCACGAGCTGAATCAGCCGGGTTGCTATCGCGATGTGAAAGATACGACCTGCGTAGCCCAGTTCAAGATAATGGATCCGAAGCCGGAGATGCAGTTGCACGGCGATGCCTTCTTCCTCGCATGGACTACCACGCCGTGGACACTTCCCTCCAATACAGCCCTTTGCGTGGGGCCTGAAATCGAGTACTTGGCTGTACAGACATTCAATCCCTATAATGGTATTCCCATCACAGTCGTATTGGGCAAGCCACTACTCCACACCCTCTTCAACCCGAAGGGCGAATGCGAGGAGATACCCGCGTCTTACGATCCGGCGCAGAAGCTGCTCCCCTACAAGGTGATTGCATCATGGAAAGGGAAGGAGTTGGAAGGCATGCGGTACGAACAGCTGATACCGTGGGTGAATCCGGGCGAAGGTGCTTTCCGAGTGATCACAGGCGATTTCGTGACCACGGAAGATGGTACCGGCATCGTGCACATAGCACCTACGTTCGGTGCGGACGATGACCGCGTGGCCAAGAAAAGCGGTGTGCCTCCCTTGATGCTTCGTGACAAAGAGGGGAATATGCGCCCTATGGTGGATCTGGCCGGCCGCTATTTCCCAACGACAGATTTGGATCCTGTCTTTGTAGAGAAGCACATGGATCTGCCGCTCTATGACGTATATGCCGGCCGCTACGTGAAAAATGCGTACGATGCCGGAAAGACGGAGAAGGACGAGACTCTCGACGTCGAACTCTGCGTGATGCTGAAGATGCAGAATCGCGTTTTCCGCATCGAAAAGATGACACACAACTACCCACACTGTTGGAGGACGGACAAGCCCGTTCTTTACTATCCGCTCGATAGCTGGTTTATCCGCACGACAGCCTGCAAAGAGGAGATGATAGCCAACAATGGTAAGATATATTGGAAACCCGAAAGCACCGGTACGGGACGCTTCGGCAAATGGCTGGAGAATCTTCAAGATTGGAACCTTTCTCGCAGTCGCTACTGGGGGACGCCATTGCCCATTTGGCGTACTGAGGATGGTTCCGAAGAGATCTGTATCGGTTCGGTCGAAGAGCTGTACAACGAGATAGAGAAGGCCGTCAAAGCCGGTATGATGGAGCGCAACCCATGGGCAGGCTTCAAGCCCGGTGTCTACACCGAGGAGAACTATGCCAAGATCGACCTGCATAGGCCTTTTGTAGATGGGATCACACTTTGCTCCCCCTCGGGTCAGCCTATGCGCCGCGAGCTGGATCTGATCGATGTATGGTTCGACTCGGGTGCTATGCCTTATGCCCAGATGCACTATCCTTTCGAGAATCGCGAACGAGTGGAGGACGGTTCCGTCTTCCCTGCCGACTTCATAGCCGAAGGGGTGGATCAGACGCGTGGATGGTTCTTCACCCTTCACGCCATAGCCACGATGATATCAGGAACGAGTTCGTTCAAAGTTGTGGTATCCAACGGCTTGGTACTGGATAAGAAAGGCAATAAGATGAGCAAGCGTCTCGGCAACGCCGTAGATCCTTTCGAGACCATCAAGAAATACGGCTCCGATCCTCTTCGCTGGTATATGATCACCAATTCTTCACCGTGGGACAATCTCAAATTCGACACGGACGGAGTGGAAGAGGTACGCAGGAAATTCTTCGGTACCTTATACAATACGTATCAGTTCTTTGCCCTCTATGCTAATTTGGACGGCTTTACGGGAGAAGAAGAAAGCATTCCTTTCGCCAAGAGGCCGGAGATCGACCGCTGGATACTTTCCGAACTGAATACATTGATTCGTGAAGTGGATGATCAACTGAGCGACTACGAGCCTACACGTGCCGGTCGTGCCATCAGCGATTTTGTCTCCGAGAATCTGAGCAACTGGTATGTGCGTCTCAGCCGCCGTCGCTTCTGGGCAGGAGATATGACCGAAGATAAGCTCTCTGCCTATCAGACGCTTTATACCTCCTTGCTTACCGTATCCAAACTGATGGCTCCGATCAGTCCTTTCTATGCTGACCGACTGTACCGAGATCTGACGGGCAAAGACGAAAGCGTGCACTTGGCGCTCTTCCCCCGGCCGGATCAAAGTCAGGTGGACCGTGCACTGGAACAGAGCATGCAGATGGCTCAGCAGATTTCGTCTATGGTGCTGGCACTTCGCCGAAGAGTGAATCTGAAAGTACGCCAACCATTGGCTACACTGATGATACCGGCTATAGACGATGAGCAGCGCAGGTGTATCGAATCCGTACAGCCGCTGATCCTTAGTGAGGTGAACGTGAAAGAGCTGCGATTCGTGGATGACAGCATGGGTATTCTGGTCAAACGAATCAAACCGGACTTCAAACGACTCGGCCCACGCTACGGCAAAGTGATGAAGGCTTTGGCAGAAGCTGTAACGGCCATGACGCAGGAAGAGATACGCTCCCTCGAGAAGGCCGGCACTTTCCGGATGGAAGTGGCCGGGACTCCGGTAGAGCTTGAATTGGCCGATGTGGAGATCGTCTCGGAAGATATTCCGGGATGGCTCGTAGCCAACGAAGGCAATCTGACCGTAGCCCTTGATATTACAGTGACAGATGAGCTTCGCTCCGAAGGACTGGCTCGCGAACTTGTGAATCGTGTGCAGAATATCCGCAAGCAAAGCGGTTTCGAAGTGTCGGACAAGGTGGATGTCCTTCTCTTGTCTAACGATATTATGGATAAAGTGGTGGCAGAGCACCATGACTATATCGCCCAGCAAATCCAGGCCGAATCGTTGGAGATCAGCGATGCTGTCAGCGATGGAGTGGAGCTGGATTTCGATGATTTTGTCCTTAGCATACAAGTTGTTAAACATCAGGGA","5.10","-31.58","129946","MSRRFAEYESLDLSRVNEEVLADWMQHRLFEESLKSREGAPSFVFYEGPPSANGMPGIHHVMARAIKDTICRYKTMKGFRVDRKAGWDTHGLPVELGVEKSLGITKEDIGKSISVEEYNAACRRDVMKFTKEWEDLTHKMGYWVDMEHPYITYDNRYIETLWWLLAELYKKGLLYKGYTIQPYSPAAGTGLSTHELNQPGCYRDVKDTTCVAQFKIMDPKPEMQLHGDAFFLAWTTTPWTLPSNTALCVGPEIEYLAVQTFNPYNGIPITVVLGKPLLHTLFNPKGECEEIPASYDPAQKLLPYKVIASWKGKELEGMRYEQLIPWVNPGEGAFRVITGDFVTTEDGTGIVHIAPTFGADDDRVAKKSGVPPLMLRDKEGNMRPMVDLAGRYFPTTDLDPVFVEKHMDLPLYDVYAGRYVKNAYDAGKTEKDETLDVELCVMLKMQNRVFRIEKMTHNYPHCWRTDKPVLYYPLDSWFIRTTACKEEMIANNGKIYWKPESTGTGRFGKWLENLQDWNLSRSRYWGTPLPIWRTEDGSEEICIGSVEELYNEIEKAVKAGMMERNPWAGFKPGVYTEENYAKIDLHRPFVDGITLCSPSGQPMRRELDLIDVWFDSGAMPYAQMHYPFENRERVEDGSVFPADFIAEGVDQTRGWFFTLHAIATMISGTSSFKVVVSNGLVLDKKGNKMSKRLGNAVDPFETIKKYGSDPLRWYMITNSSPWDNLKFDTDGVEEVRRKFFGTLYNTYQFFALYANLDGFTGEEESIPFAKRPEIDRWILSELNTLIREVDDQLSDYEPTRAGRAISDFVSENLSNWYVRLSRRRFWAGDMTEDKLSAYQTLYTSLLTVSKLMAPISPFYADRLYRDLTGKDESVHLALFPRPDQSQVDRALEQSMQMAQQISSMVLALRRRVNLKVRQPLATLMIPAIDDEQRRCIESVQPLILSEVNVKELRFVDDSMGILVKRIKPDFKRLGPRYGKVMKALAEAVTAMTQEEIRSLEKAGTFRMEVAGTPVELELADVEIVSEDIPGWLVANEGNLTVALDITVTDELRSEGLARELVNRVQNIRKQSGFEVSDKVDVLLLSNDIMDKVVAEHHDYIAQQIQAESLEISDAVSDGVELDFDDFVLSIQVVKHQG","1674686 1678096","TIGR ID: PG1596","isoleucyl-tRNA synthetase (isoleucine--tRNA ligase) (mupirocin resistance protein)","Cytoplasm","This sequence is orthologous to CT019.Numerous significant hits to isoleucyl-tRNA synthetase (isoleucine--tRNA ligase) (mupirocin resistance protein) in gapped BLAST; e.g. residues 15-1106 are 35% similar to gb|AAC67179.1| isoleucyl-tRNA synthetase of Borrelia burgdorferi, residues 19-1083 are 36% similar to emb|CAA53189.1| isoleucyl tRNA synthetase of Staphylococcus aureus, residues 9-1129 are 35% similar to gb|AAC67609.1| isoleucyl-tRNA synthetase of Chlamydia trachomatis.This sequence is similar to BT0806.","
InterPro
IPR002300
Domain
Aminoacyl-tRNA synthetase, class Ia
PF00133\"[19-728]TtRNA-synt_1
InterPro
IPR002301
Domain
Isoleucyl-tRNA synthetase, class Ia
PR00984\"[43-54]T\"[457-472]T\"[605-618]T\"[647-656]TTRNASYNTHILE
TIGR00392\"[6-937]TileS
InterPro
IPR009008
Domain
ValRS-IleRS-LeuRS editing
SSF50677\"[203-459]TValRS_IleRS_edit
InterPro
IPR009080
Domain
Aminoacyl-tRNA synthetase, class 1a, anticodon-binding
SSF47323\"[740-985]T\"[1049-1136]TtRNAsyn_1a_bind
InterPro
IPR013155
Domain
tRNA synthetase, valyl/leucyl, anticodon-binding
PF08264\"[775-925]TAnticodon_1
InterPro
IPR014729
Domain
Rossmann-like alpha/beta/alpha sandwich fold
G3DSA:3.40.50.620\"[8-727]TRossmann-like_a/b/a_fold
noIPR
unintegrated
unintegrated
G3DSA:1.10.730.10\"[732-867]TG3DSA:1.10.730.10
PTHR11946\"[12-274]T\"[291-371]T\"[410-557]T\"[583-1116]TPTHR11946
PTHR11946:SF9\"[12-274]T\"[291-371]T\"[410-557]T\"[583-1116]TPTHR11946:SF9
SSF52374\"[4-738]TSSF52374


","BeTs to 17 clades of COG0060COG name: Isoleucyl-tRNA synthetaseFunctional Class: JThe phylogenetic pattern of COG0060 is amtkYqvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** PR00984 (Isoleucyl-tRNA synthetase signature) with a combined E-value of 3.5e-47. PR00984A 43-54 PR00984B 232-255 PR00984C 457-472 PR00984D 605-618 PR00984E 647-656","Residues 793-891 are 46% similar to a (SYNTHETASE AMINOACYL-TRNA PROTEIN LIGASE BIOSYNTHESIS) protein domain (PD001183) which is seen in SYI_THETH.Residues 140-206 are 52% similar to a (SYNTHETASE AMINOACYL-TRNA PROTEIN LIGASE BIOSYNTHESIS) protein domain (PD002670) which is seen in SYIP_STAAU.Residues 675-791 are 45% similar to a (SYNTHETASE AMINOACYL-TRNA PROTEIN LIGASE BIOSYNTHESIS) protein domain (PD000476) which is seen in SYI_THETH.Residues 450-530 are 55% similar to a (SYNTHETASE AMINOACYL-TRNA LIGASE PROTEIN BIOSYNTHESIS) protein domain (PD000647) which is seen in SYI_THETH.Residues 24-124 are 53% similar to a (SYNTHETASE AMINOACYL-TRNA LIGASE PROTEIN BIOSYNTHESIS) protein domain (PD000389) which is seen in SYIP_STAAU.Residues 457-598 are 40% similar to a (ISOLEUCYL-TRNA SYNTHETASE, MUPIROCIN) protein domain (PD118443) which is seen in SYIP_STAAU.Residues 304-370 are 47% similar to a (SYNTHETASE AMINOACYL-TRNA PROTEIN LIGASE BIOSYNTHESIS) protein domain (PD000939) which is seen in SYIC_YEAST.Residues 603-673 are 59% similar to a (SYNTHETASE ISOLEUCYL-TRNA AMINOACYL-TRNA) protein domain (PD002669) which is seen in SYI_HUMAN.Residues 914-1037 are 28% similar to a (SYNTHETASE ISOLEUCYL-TRNA AMINOACYL-TRNA) protein domain (PD008559) which is seen in SYI_TREPA.Residues 942-1092 are 21% similar to a (PROTEIN ORF PUTATIVE KINASE) protein domain (PD000146) which is seen in SYIP_STAAU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Mar 20 08:45:13 MST 2001","Wed Dec 3 09:23:21 2003","Thu Mar 15 14:38:40 MST 2001","Thu Mar 15 14:38:40 MST 2001","Thu Mar 15 14:38:40 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 333-920 and 24-254 are 21% and 25% similar to PG1013, valyl-tRNA synthetase, and there are three weak regions of similarity to PG0717, leucyl-tRNA synthetase,","Thu Mar 15 14:38:40 MST 2001","Thu Mar 15 14:38:40 MST 2001","-46% similar to PDB:1FFY INSIGHTS INTO EDITING FROM AN ILE-TRNA SYNTHETASE STRUCTURE WITH TRNA(ILE) AND MUPIROCIN (E_value = 4.5E_86);-46% similar to PDB:1QU2 INSIGHTS INTO EDITING FROM AN ILE-TRNA SYNTHETASE STRUCTURE WITH TRNA(ILE) AND MUPIROCIN (E_value = 4.5E_86);-46% similar to PDB:1QU3 INSIGHTS INTO EDITING FROM AN ILE-TRNA SYNTHETASE STRUCTURE WITH TRNA(ILE) AND MUPIROCIN (E_value = 4.5E_86);-39% similar to PDB:1GAX CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS VALYL-TRNA SYNTHETASE COMPLEXED WITH TRNA(VAL) AND VALYL-ADENYLATE ANALOGUE (E_value = 1.1E_52);-39% similar to PDB:1IVS CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS VALYL-TRNA SYNTHETASE COMPLEXED WITH TRNA(VAL) AND VALYL-ADENYLATE ANALOGUE (E_value = 1.1E_52);","","","Residues 19 to 728 (E-value = 5.3e-159) place PG1395 in the tRNA-synt_1 family which is described as tRNA synthetases class I (I, L, M and V) (PF00133)","Tue Mar 20 08:15:06 MST 2001","34541247","","","Hodgson,J.E., Curnock,S.P., Dyke,K.G., Morris,R., Sylvester,D.R. and Gross,M.S. 1994. Molecular characterization of the gene encoding high-level mupirocin resistance in Staphylococcus aureus J2870. Antimicrob. Agents Chemother. 38 (5): 1205-1208. PubMed: 8067768.Dyke,K.G., Curnock,S.P., Golding,M. and Noble,W.C. 1991. Cloning of the gene conferring resistance to mupirocin in Staphylococcus aureus. FEMS Microbiol. Lett. 61 (2-3): 195-198. PubMed: 1903747.","","Tue Mar 20 08:31:41 MST 2001","1","","","PG1596" "PG1396","1678169","1678546","378","ATGGTAGAAAAAACACGCTACACCGACGAAGAGTTGGAAGAATTCAAGCAAATAATTTTGGCCAAATTGGATCAGGCTCGCAAGGACTACGAGCAGTTGCGTGCGGGCGTCAGCAATTCAGAGGGTAATGATGTGTCTGATACCTCTCCCACGTTCAAGGTGTTGGAGGAGGGTGCAGCCACACTGTCGAAAGAGGAATCCGGACGCTTGGCACAGCGACTGATGAAGTTTATCCAAAACTTGCAAGCTGCTCTGATACGTATCGAGAATAAGACTTACGGCGTTTGCCGCGAAACGGGCAAACTTATTCCCAAAGAACGACTTCGCGCCGTACCTCATGCTACGCTGAGCATAGAGGCCAAAATGAACGAGAAGAAA","8.40","1.20","14311","MVEKTRYTDEELEEFKQIILAKLDQARKDYEQLRAGVSNSEGNDVSDTSPTFKVLEEGAATLSKEESGRLAQRLMKFIQNLQAALIRIENKTYGVCRETGKLIPKERLRAVPHATLSIEAKMNEKK","1678169 1678546","TIGR ID: PG1597","probable DNAK suppressor protein","Cytoplasm","Weak hits to dnaK suppressor proteins / conserved hypothetical proteins with gapped BLAST; e.g. residues 12-121 are 29% similar to probable dnaK suppressor (AE001194) of Treponema pallidum, residues 4-126 are 26% similar to probable dnaK suppressor (AE001314) of Chlamydia trachomatis, residues 8-126 are 25% similar to DnaK suppressor (AE001638) of Chlamydophila pneumoniae.","
InterPro
IPR000962
Domain
Zinc finger, DksA/TraR C4-type
PR00618\"[96-107]T\"[108-120]TDKSAZNFINGER
PS51128\"[53-126]TZF_DKSA_2
noIPR
unintegrated
unintegrated
SSF109635\"[7-92]TSSF109635
SSF57716\"[93-121]TSSF57716


","BeTs to 6 clades of COG1734COG name: DnaK suppressor protein DskAFunctional Class:  TThe phylogenetic pattern of COG1734 is -----Q--eB-h----olinxNumber of proteins in this genome belonging to this COG is 1","***** IPB000962 (Prokaryotic dksA/traR C4-type zinc finger) with a combined E-value of 1.5e-07. IPB000962 96-125","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Mar 22 12:38:20 MST 2000","Wed Apr 19 16:10:21 MDT 2000","","Wed Apr 19 16:10:21 MDT 2000","Wed Apr 19 16:10:21 MDT 2000","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","-48% similar to PDB:1M5I Crystal Structure of the coiled coil region 129-250 of the tumor suppressor gene product APC (E_value = );-52% similar to PDB:1UFN Solution structure of the SAND domain of the putative nuclear protein homolog (5830484A20Rik) (E_value = );-47% similar to PDB:1I84 CRYO-EM STRUCTURE OF THE HEAVY MEROMYOSIN SUBFRAGMENT OF CHICKEN GIZZARD SMOOTH MUSCLE MYOSIN WITH REGULATORY LIGHT CHAIN IN THE DEPHOSPHORYLATED STATE. ONLY C ALPHAS PROVIDED FOR REGULATORY LIGHT CHAIN. ONLY BACKBONE ATOMS PROVIDED FOR S2 FRAGMENT. (E_value = );-55% similar to PDB:1N8P Crystal Structure of cystathionine gamma-lyase from yeast (E_value = );-62% similar to PDB:1V77 Crystal structure of the PH1877 protein (E_value = );","","","No significant hits to the Pfam 11.0 database","Wed Apr 19 16:10:21 MDT 2000","34541248","","","","","","1","","","PG1597" "PG1397","1678553","1679230","678","ATGGCTTCTTTTCTCTCCCGTCTGCCTCAGGGAAAAGTAGTCGCAGCTCTCATTGTCTTGCTTCTGGTCGTAGATCAGGTGATCAAGATATGGGTGAAGACGACTATGGTACTGGGGCAGTCGCACGTTGTCGCCCCTTGGTTTCAGATCCATTTCGTGGAAAATCCCGGGATGGCTTTCGGTATAGAATTAGGGAGCAAACTCTTCTTGAGTCTCTTTCGCATCGTTGCCATGGGCTTTTGTATCTATTTATTGGCCAAATTGGTACGAAAGCGAGAGCATACACTCGCCTTTCTCTCTTGTTTGTCTCTGATCATTGCCGGCGGTATCGGGAATATTATCGATTCTATTTTCTATGGGGTCATCTTTTCCGGCAGTCACGGACAGATTGCACAACTATTTCCTTCAGGAGGTGGCTATGAGACGTGGTTTCACGGTCGAGTAGTGGATATGTTTTACTTCCCTTTGATAGAGGGAGTATTTCCTTCGTGGCTTCCTTTCTGGGGAGGTGAAGAGTTTGTCTTTTTCCATCCGGTCTTCAACTTTGCCGATTCCTGTATCTCCATCGGGTTGATACTGCTATTGGTATGTTATCCGCGTACGGTGAGTCTCCTGCTCGATGGGAAAAAGACATTGCCGGAAGGCACCACAGAGGATTCCGAGCCAACAAAGAGAGAA","7.10","0.25","25123","MASFLSRLPQGKVVAALIVLLLVVDQVIKIWVKTTMVLGQSHVVAPWFQIHFVENPGMAFGIELGSKLFLSLFRIVAMGFCIYLLAKLVRKREHTLAFLSCLSLIIAGGIGNIIDSIFYGVIFSGSHGQIAQLFPSGGGYETWFHGRVVDMFYFPLIEGVFPSWLPFWGGEEFVFFHPVFNFADSCISIGLILLLVCYPRTVSLLLDGKKTLPEGTTEDSEPTKRE","1678553 1679230 [Shorter 1793 91 94]","TIGR ID: PG1598","possible lipoprotein signal peptidase","Inner membrane, Cytoplasm","One weak hit in gapped BLAST; e.g. residues 25-211 have 27% similarity to X78084, S.carnosus lipoprotein signal peptidase.","
InterPro
IPR001872
Family
Peptidase A8, signal peptidase II
PD004304\"[36-122]TPeptidase_A8
PR00781\"[55-63]T\"[102-117]T\"[180-196]TLIPOSIGPTASE
PF01252\"[12-212]TPeptidase_A8


","BeTs to 8 clades of COG0597COG name: Lipoprotein signal peptidaseFunctional Class: NThe phylogenetic pattern of COG0597 is -----qvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB001872 (Signal peptidase II/lipoprotein signal peptidase family (A8)) with a combined E-value of 2.5e-11. IPB001872A 54-63 IPB001872D 177-196","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Fri Jun 15 11:23:37 MDT 2001","Tue Mar 20 08:53:37 MST 2001","Thu Feb 22 15:29:30 MST 2001","Thu Feb 22 15:29:30 MST 2001","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 20 08:53:37 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 12 to 212 (E-value = 2.5e-07) place PG1397 in the Peptidase_A8 family which is described as Signal peptidase (SPase) II (PF01252)","Tue Mar 20 08:53:37 MST 2001","34541249","","","Witke,C. and Gotz,F. 1995. Cloning and nucleotide sequence of the signal peptidase II (lsp)-gene from Staphylococcus carnosus. FEMS Microbiol. Lett. 126 (3): 233-239. PubMed: 7729667.","","Tue Mar 20 08:53:37 MST 2001","1","","","PG1598" "PG1398","1679230","1680015","786","ATGAGACGTTTGTACGTCATATTGATTGTGAGCATAGCCTCTCTTGCACTGCTGGGAGGTTGTAGCCGAAGCGGCTATAAAAAGATCCCGAAAAAGAAGTTGAAGGATCTGATGGTCGAACTTTATGTGGCCGATGGTCACTTTGCTAATATATACGATCCGAAATTGACGGATAGTGTTCGTGAAGCGGTTTACACCAATCTGTTTGCCAAGTACGGCACTACTCGCATGGATTACGACAGCACGCTGATGTGGTATGGTCGCCATGATTTGGAAGAGTATATCGCCATCTGCCAAAGCGTTCGGGATGAACTGGAAAAGCAGCGAATCGATCTGGACAAGCAGATTACGTTGGAGCGTGAGAAGAAAGGGATGGATATGCTCGATGGTTCGTTCTACGAACTGGATTCGATCAATATGCTGGCCGGAGATAGTACGTGTTTCTACCGGCCGGAGATGCCATTCCTGAACAGGTCTTTCATCATCACACCAGGTACAGCTTATAAGGAAGGCACCCGATTGGAATTTGTCACGAGGCTGAGAGGTCTACAACTTCGTCCTGATGCAACGATGGAGATGTTTCTCCAATTGGTTTGCACCGACAATACCGTTCTTACGGTCAGCCGACCTGTGAATCCGGGAATAAATATGCTGACAACTTCAGTGCCGGACTCTGCGAGTGTGAGCCGTGTCTATGGCTATTTGCGAGGCTTCCCTGATTCGGCCGGAATCATGTCGTTAAGTCCGTTCGTTATCGATAGTTTTTCTCTTCGTAAGTTCGAACCT","7.20","0.30","29855","MRRLYVILIVSIASLALLGGCSRSGYKKIPKKKLKDLMVELYVADGHFANIYDPKLTDSVREAVYTNLFAKYGTTRMDYDSTLMWYGRHDLEEYIAICQSVRDELEKQRIDLDKQITLEREKKGMDMLDGSFYELDSINMLAGDSTCFYRPEMPFLNRSFIITPGTAYKEGTRLEFVTRLRGLQLRPDATMEMFLQLVCTDNTVLTVSRPVNPGINMLTTSVPDSASVSRVYGYLRGFPDSAGIMSLSPFVIDSFSLRKFEP","1679140 1680015 [Bad Olap 1792 91 5]","TIGR ID: PG1599","conserved hypothetical protein","Cytoplasm","This sequence corresponds to gi:34397566 in Genbank.Its nearest neighbor in the NR database is gi:29346219 from Bacteroides thetaiotaomicron VPI-5482.","
noIPR
unintegrated
unintegrated
PS51257\"[1-21]TPROKAR_LIPOPROTEIN


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 11:55:13 MDT 2001","","Thu Jun 14 11:55:13 MDT 2001","Thu Jun 14 11:55:13 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:55:13 MDT 2001","Thu Jun 14 11:55:13 MDT 2001","","","Tue Mar 8 11:30:37 2005","Tue Mar 8 11:30:37 2005","Thu Jun 14 11:55:13 MDT 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Jun 14 11:55:13 MDT 2001","-62% similar to PDB:1DGI Cryo-EM structure of human poliovirus(serotype 1)complexed with three domain CD155 (E_value = );-41% similar to PDB:1NM2 \"Malonyl-CoA:ACP Transacylase\" (E_value = );-62% similar to PDB:1NN8 CryoEM structure of poliovirus receptor bound to poliovirus (E_value = );-41% similar to PDB:2CDH ARCHITECTURE OF THE THERMOMYCES LANUGINOSUS FUNGAL FATTY ACID SYNTHASE AT 5 ANGSTROM RESOLUTION. (E_value = );-41% similar to PDB:2CF2 ARCHITECTURE OF MAMMALIAN FATTY ACID SYNTHASE (E_value = );","","","No significant hits to the Pfam 11.0 database","Thu Jun 14 11:55:13 MDT 2001","34541250","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Tue Mar 8 11:30:37 2005","","1","","","PG1599" "PG1399","1681077","1680055","1023","ATGAGAAAATCCGATCGTCTCGACATTCTCTTTCTGCAACTCGTAGCTGTTACCTCTCTCGTGTTGTGCCATGCAGCTCCTCGTCAGCTGGACAACTTGCCGTCGTGGTTCCCTTTCTACATAGAGCATTTCTATATGAGAGTTCCCCTCTTCTTTTTTATTTCCGGTTTTCTGTGGGCTTTGGGGGAAAGAAAGAGGGTAGGGAAAACGGCTTATCAGGTGATCAGGAAAAAAGCCAAGCGTTTGCTTCTTCCTTACCTCTTTATGGGGACGGTGGCATTCCTGCCTAAAGTCCTACTGAGTGCCTACACATACCACCCGATGGAGGCCTCCTTTTTCGGATATGTCAGCAGCTTTCTTTTTCCGGCAACGAATGCTATTCGCTTTCTGTGGTTTTTGCCCTGCTTGTTCAGTCTATTTTGCCTGGTTGTTTTTTATCCTCGGAAGTGGATGGAGGGACCGAAGATTTTCGGAGCTTACCTCATCGCCTGCCTTCTGCATATAGTCACCGAATACATCCCTGTGGCATTCGAGGATGATCCTTTCTGTATTATAGCAGCCTTTAACAATTTTCACTACTTCGTTCTGGGTATGATGTTATACCGCTATTCCGATCGTATAGTTTCCAGACGAGTATCGGTAGCCCTGCTTATCGCTTTCCATGTGGCACTTTTCTCCCGTTTCTTTATGCCCGAGCAGTCATCGTTCTTGGGGGTATTGAACTGGTCTTATTATACCCTGTTCATCGTTGTCCTTTATGGCGTGTCGGTAAAAATCGGAGACAAGGTGATGCCTGCTCCATTGCTTCACGGTATAGGGTTGTACAGCTATCCCATATTCATTTTTTCATGGTTCGTGCTGGTCGCATTGAGAATAGTCCTTTATGACCGCTATGAGCTGAGCACCATGATGATCAATGGAGCTATTGCCATTAGTTTCATAGCCGGTTTGTTCATACCGCTTTACCTGTCCAAGTTTTTGGACAGGAAACTTCCGGTTTCTCTCAAGCCGCTGGTCGGATTG","10.40","16.43","39520","MRKSDRLDILFLQLVAVTSLVLCHAAPRQLDNLPSWFPFYIEHFYMRVPLFFFISGFLWALGERKRVGKTAYQVIRKKAKRLLLPYLFMGTVAFLPKVLLSAYTYHPMEASFFGYVSSFLFPATNAIRFLWFLPCLFSLFCLVVFYPRKWMEGPKIFGAYLIACLLHIVTEYIPVAFEDDPFCIIAAFNNFHYFVLGMMLYRYSDRIVSRRVSVALLIAFHVALFSRFFMPEQSSFLGVLNWSYYTLFIVVLYGVSVKIGDKVMPAPLLHGIGLYSYPIFIFSWFVLVALRIVLYDRYELSTMMINGAIAISFIAGLFIPLYLSKFLDRKLPVSLKPLVGL","1681077 1680055","TIGR ID: PG1600","hypothetical protein","Inner membrane, Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR002656
Domain
Acyltransferase 3
PF01757\"[6-330]TAcyl_transf_3


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","-69% similar to PDB:1M56 Structure of cytochrome c oxidase from Rhodobactor sphaeroides (Wild Type) (E_value = );-69% similar to PDB:1M57 Structure of cytochrome c oxidase from Rhodobacter sphaeroides (EQ(I-286) mutant)) (E_value = );-69% similar to PDB:2GSM Catalytic Core (Subunits I and II) of Cytochrome c oxidase from Rhodobacter sphaeroides (E_value = );","","","Residues 6 to 330 (E-value = 4e-05) place PG1399 in the Acyl_transf_3 family which is described as Acyltransferase family (PF01757)","","34541251","","","","","","1","","","PG1600" "PG1400","1681885","1681115","771","ATGGAGTCCAAGAAGAACAGTTGGTCTGAAGGGTATCTGATCCATCTGCCCGAAACGGCCAGCACCAACTCCTATCTGTCCGATCTTTTGATGCAGGATCCCGACCTACCTGCGTGGACCGTGGTCATGACAGACAATCAGACTGCGGGACGAGGACAGCAGGGCAATAGCTGGTTCGCGTCTCCGGGCTTGAACCTGACCTTTTCCGTTCTGCTGAGGCCGACCATGCTTCCTGCACAGCAGCAATTCGATCTCTCCCGATTGTGTGCACTCTCCGTGCTCCATACACTCTACGACCTTCTTCCTTCTGCCGAGATGCTCAGCATCAAATGGCCGAACGATATATACTATGGAGACAGGAAAATAGCAGGCATACTGATCGAGCACAGCCTGACGGGCAGCAACCTCGACTACAGCATTCTGGGTGTCGGTCTCAATATCAACGAAAGCGACTATCCGAGCTATCTCCCCAATCCTACATCGGTCCGGATCATTCTGGGGCATTCGGTAGATCGTATAGAGATATTCCGCTCTTTTATGCAGGAGATGCGTTCACTCTACAGACACATAGAAGAGCATACTGCCGACCAGCTTCACACTCGTTATATGCAGTGTCTTTACAGGAGGGTAGGGTACCATCCCTTCCAAAATAAGGAAGGGCGTTTCGATGCCATAATTGCCGATGTATTGCCTTCCGGAGAGCTGTTGTTGGTGCGTGCCGATGGTAGAAAGTCCTCATATGCTTTCAAAGAAATCGCCTATGTCCTTTGT","6.10","-4.22","29228","MESKKNSWSEGYLIHLPETASTNSYLSDLLMQDPDLPAWTVVMTDNQTAGRGQQGNSWFASPGLNLTFSVLLRPTMLPAQQQFDLSRLCALSVLHTLYDLLPSAEMLSIKWPNDIYYGDRKIAGILIEHSLTGSNLDYSILGVGLNINESDYPSYLPNPTSVRIILGHSVDRIEIFRSFMQEMRSLYRHIEEHTADQLHTRYMQCLYRRVGYHPFQNKEGRFDAIIADVLPSGELLLVRADGRKSSYAFKEIAYVLC","1681963 1681115 [Bad Olap 1796 104 13]","TIGR ID: PG1601","biotin acetyl-CoA carboxylase ligase/biotin operon repressor bifunctional protein","Cytoplasm","Numerous significant hits to BirA proteins in gapped BLAST; e.g.residues 40-253 have 33% similarity to AF013169, P. furiosus biotin ligase BirA homolog, residues 42-218 have 32% similarity to AE004843, P. aeruginosa BirA bifunctional protein, residues 18-202 have 30% similarity to AE000942, M. thermautotrophicus biotin acetyl-CoA carboxylase ligase / biotin operon repressor bifunctional protein.","
InterPro
IPR004143
Domain
Biotin/lipoate A/B protein ligase
PF03099\"[15-118]TBPL_LipA_LipB
InterPro
IPR004408
Domain
Biotin--acetyl-CoA-carboxylase ligase
TIGR00121\"[12-255]TbirA_ligase
noIPR
unintegrated
unintegrated
G3DSA:3.30.930.10\"[12-207]TG3DSA:3.30.930.10
PTHR12835\"[12-244]TPTHR12835
SSF55681\"[1-207]TSSF55681


","BeTs to 15 clades of COG0340COG name: Biotin-(acetyl-CoA carboxylase) ligaseFunctional Class: HThe phylogenetic pattern of COG0340 is amtkyqvcebrhuj---linxNumber of proteins in this genome belonging to this COG is 1","***** PF01317 (Biotin repressor) with a combined E-value of 5.9e-16. PF01317B 39-55 PF01317C 109-147","Residues 40-253 are 33% similar to a (LIGASE BIOTIN BIRA PROTEIN) protein domain (PD004125) which is seen in O73952_PYRFU.","","Thu Jun 14 11:55:24 MDT 2001","","Thu Jun 14 11:55:24 MDT 2001","Thu Jun 14 11:55:24 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:55:24 MDT 2001","Thu Jun 14 11:55:24 MDT 2001","","","Fri Apr 20 13:25:27 MDT 2001","Mon Jun 25 16:42:02 MDT 2001","Thu Feb 22 15:41:49 MST 2001","Mon Jun 25 16:42:02 MDT 2001","Mon Jun 25 16:42:02 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 20 09:09:53 MST 2001","-46% similar to PDB:1WNL Crystal Structure Of Biotin-(Acetyl-CoA-Carboxylase) ligase From Pyrococcus Horikoshii Ot3 in complex with ADP (E_value = 2.5E_16);-46% similar to PDB:1WPY Crystal Structure Of Biotin-(Acetyl-CoA-Carboxylase) ligase From Pyrococcus Horikoshii Ot3 in complex with biotin (E_value = 2.5E_16);-46% similar to PDB:1WQ7 Crystal Structure Of Biotin-(Acetyl-CoA-Carboxylase) ligase From Pyrococcus Horikoshii Ot3 (E_value = 2.5E_16);-46% similar to PDB:1WQW Crystal Structure Of Biotin Protein Ligase From Pyrococcus Horikoshii Ot3 in complex with Biotinyl-5-AMP (E_value = 2.5E_16);-46% similar to PDB:1X01 Crystal Structure Of Biotin Protein Ligase From Pyrococcus Horikoshii Ot3 in complex with ATP (E_value = 2.5E_16);","","","Residues 15 to 153 (E-value = 5.1e-18) place PG1400 in the BPL_LipA_LipB family which is described as Biotin/lipoate A/B protein ligase family (PF03099)","Mon Jun 25 16:42:02 MDT 2001","34541252","","","Mukhopadhyay,B., Purwantini,E., Kreder,C.L. and Wolfe,R.S. Oxaloacetate synthesis in the methanarchaeon Methanosarcinabarkeri: a pyruvate carboxylase and an E. coli-type bifunctionalbotin-ligase (BirA), exhibiting an unique gene organization. Unpublished. ","","Tue Mar 20 09:09:53 MST 2001","1","","","PG1601" "PG1401","1682237","1681860","378","ATGGACATAGAGCAAGCTCGAGAGCTATGCTTGTCACTGCCACAGGTGGAGGAGAGTTTCCCGTTCGATGATGTTACGTTGGTTATGAAAGTAGCCGGCAAAATGTTTGCTCTGATACCCCTTGATTCCGAAAAGAAAGTCATCGCACTCAAATGCGATCCCGATCGGTCCGAACATTTAAGGATGCACTACGAGGGTATCACGGGGGCTTTTCATATGAACAAACGACATTGGAACAGCGTAGCTTTGGACTCGGATGCCCCTGCCGATCTGATTGCACGGCTCATCCGACATTCGTACGCTCTCGTTGTATCCAAACTCCCTAAATACATCCGTACACAACCGCCTTTCGATGGAGTCCAAGAAGAACAGTTGGTC","6.00","-2.90","14345","MDIEQARELCLSLPQVEESFPFDDVTLVMKVAGKMFALIPLDSEKKVIALKCDPDRSEHLRMHYEGITGAFHMNKRHWNSVALDSDAPADLIARLIRHSYALVVSKLPKYIRTQPPFDGVQEEQLV","1682237 1681860 [Shorter 1795 104 50]","TIGR ID: PG1602","conserved hypothetical protein","Cytoplasm","Several significant hits and several weak hits in gapped BLAST; e.g. residues 3-106 have 42% similarity to AE002071, D. radiodurans conserved hypothetical protein, residues 5-109 have 45% similarity to AL136503, S. coelicolor hypothetical protein SCC77.02., residues 1-109 have 40% similarity to AF104225, L. monocytogene unknown protein.","
InterPro
IPR007351
Family
Protein of unknown function DUF419
PF04237\"[10-104]TDUF419


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 1-109 are 30% similar to a (HYPOTHETICAL 13.5 KD PROTEIN) protein domain (PD076121) which is seen in YJBR_ECOLI.Residues 4-109 are 38% similar to a (HYPOTHETICAL 14.1 KD PROTEIN) protein domain (PD077594) which is seen in YBDF_ECOLI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Feb 22 15:48:44 MST 2001","Tue Mar 20 09:19:51 MST 2001","Thu Feb 22 15:48:44 MST 2001","","Thu Feb 22 15:48:44 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 20 09:19:51 MST 2001","-60% similar to PDB:2A1V Hypothetical protein from Deinococcus radiodurans (E_value = 1.1E_19);-51% similar to PDB:2FKI NMR Structure of Protein yjbR from Escherichia coli; Northeast Structural Genomics Consortium Target ER226 (E_value = 2.4E_11);-52% similar to PDB:1Z3I Structure of the SWI2/SNF2 chromatin remodeling domain of eukaryotic Rad54 (E_value = 2.4E_11);-56% similar to PDB:2FON X-ray crystal structure of LeACX1, an acyl-CoA oxidase from Lycopersicon esculentum (tomato) (E_value = 2.4E_11);","","","Residues 10 to 104 (E-value = 4e-33) place PG1401 in the DUF419 family which is described as Protein of unknown function (DUF419) (PF04237)","Tue Mar 20 09:19:51 MST 2001","34541253","","","","","","1","","","PG1602" "PG1402","1682308","1682889","582","ATGGAAAAACTCATTTTTGCCACAAACAATCCACATAAGCTCAACGAGATTCGTCATATTCTTGAGGGAAAGGTGGAGATTGTCGGGCTGGACGAAATAGGTTGTCGGGAGGATATTCCCGAAACGGCCGACACACTACAGGGAAATGCTTTGCTCAAAGCAGAATTTGTTCACAAACGATATGGTTTACCTTGCTTTGCTGACGACACAGGCTTGGAAGTAGAAGCTCTTGACAGAGCACCCGGCGTCCACTCTGCACGGTACGCAGGAGAACCGACCAATGCCGATGCCAATGTACGGAAACTACTCGAAGCATTGAGCAGTGTACCACATCCCAGAAAAGCATGCTTCCGTACCGTGATCGCCCTGATCGATGATCATGGAAAACACTTCTTCGAAGGGAAGATCGAAGGTACCATAGCATCTGAATGCAGAGGATCGGGCGGCTTCGGCTATGACCCCGTTTTCATCCCGGAGGGACACACGCTCAGCTTTGCAGAAATGGGAGAAGAAACCAAAAATCAAATCAGTCATCGTGCTTTGGCGGTGGCACAGCTCCGCGATTTTTTATTATGTGCAAAA","5.80","-6.06","21291","MEKLIFATNNPHKLNEIRHILEGKVEIVGLDEIGCREDIPETADTLQGNALLKAEFVHKRYGLPCFADDTGLEVEALDRAPGVHSARYAGEPTNADANVRKLLEALSSVPHPRKACFRTVIALIDDHGKHFFEGKIEGTIASECRGSGGFGYDPVFIPEGHTLSFAEMGEETKNQISHRALAVAQLRDFLLCAK","conserved hypothetical protein","TIGR ID: PG1603","nucleoside-triphosphatase","Cytoplasm","This sequence is similar to CT606 of Chlamydia trachomatis.Numerous moderately significant hits in gapped BLAST to conserved hypothetical protein; e.g. residues 1-190 are 46% similar to AE003980 of Xylella fastidiosa, residues 1-190 are 43% similar to Z99118 of Bacillus subtilis, residues 1-190 are 41% similar to AP001517 of Bacillus halodurans.","
InterPro
IPR002637
Family
Ham1-like protein
PTHR11067\"[1-190]THam1p_like
PF01725\"[4-190]THam1p_like
TIGR00042\"[3-191]THam1p_like
noIPR
unintegrated
unintegrated
G3DSA:3.90.950.10\"[3-190]TG3DSA:3.90.950.10
PTHR11067:SF1\"[1-190]TPTHR11067:SF1
SSF52972\"[1-193]TSSF52972


","BeTs to 14 clades of COG0127COG name: Xanthosine triphosphate pyrophosphatase, HAM1/YggV familyFunctional Class: FThe phylogenetic pattern of COG0127 is amtkyqvcebrh----olin-Number of proteins in this genome belonging to this COG is 1","***** PF01725 (Ham1 family) with a combined E-value of 2.4e-31. PF01725A 3-18 PF01725B 64-81 PF01725C 149-158 PF01725D 162-183","Residues 7-190 are 43% similar to a (PROTEIN CONSERVED HAM1 186AA) protein domain (PD004952) which is seen in P94558_BACSU.","","Thu Jun 14 11:55:55 MDT 2001","","Thu Jun 14 11:55:55 MDT 2001","Thu Jun 14 11:55:55 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:55:55 MDT 2001","Thu Jun 14 11:55:55 MDT 2001","Wed Mar 22 16:38:39 MST 2000","","Mon Jul 28 14:17:25 2008","Mon Jun 25 16:43:49 MDT 2001","Thu Jun 7 09:23:13 MDT 2001","Mon Jun 25 16:43:49 MDT 2001","Mon Jun 25 16:43:49 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Jul 28 14:17:25 2008","-54% similar to PDB:1K7K Putative ribosomal protein (E_value = 1.5E_27);-57% similar to PDB:1B78 STRUCTURE-BASED IDENTIFICATION OF THE BIOCHEMICAL FUNCTION OF A HYPOTHETICAL PROTEIN FROM METHANOCOCCUS JANNASCHII:MJ0226 (E_value = 9.3E_25);-57% similar to PDB:2MJP STRUCTURE-BASED IDENTIFICATION OF THE BIOCHEMICAL FUNCTION OF A HYPOTHETICAL PROTEIN FROM METHANOCOCCUS JANNASCHII:MJ0226 (E_value = 9.3E_25);-55% similar to PDB:1VP2 Crystal structure of Putative Xanthosine triphosphate pyrophosphatase/HAM1 protein homolog (TM0159) from Thermotoga maritima at 1.78 A resolution (E_value = 4.3E_22);-53% similar to PDB:1V7R Structure of nucleotide triphosphate pyrophosphatase from pyrococcus horikoshii OT3 (E_value = 2.4E_20);","","","Residues 4 to 190 (E-value = 3e-67) place PG1402 in the Ham1p_like family which is described as Ham1 family (PF01725)","Mon Jun 25 16:43:49 MDT 2001","34541254","","","","","","1","","","PG1603" "PG1403","1682880","1685207","2328","ATGTGCAAAATAAGATTCAGCCTCTTGCAGGCTCTTGTCGTCTGCTTATTGTTCACCTCTTTTTCTCTCCAAGCTCAAGAGGAAGGTATTTGGAATACCCTCTTGGCTATCCACAAGACGGAAAAAGCCGTAGAAACGCCCAAGAAAGTCTTTGCCGTAGCCAACGGAGTACTTTACTCGGTGGGCAAAGAAGCTCCCCATGAGGCAAAGATCTTCGACCGTATCAGCGGACTCAGCGATACATCGGTAAGCAGCATAGCCTACTCCGAGCAACTAAAATCCTTGGTCATATACTATGCATCAGGCAATATCGACATCTTGGACGAAGCAGGCCGTGTGACCAACGTACCTGCATTGAAAGACAATATCGATCTGATAGACAAAACGCTCAATCGCCTTTTGATCGTAGGCAACAGGGCTTATTTGGCAGGAGGATTCGGCCTCTCCGTTCTGGATGTCGCCGAAGCTCGCATACCGGCTACCTACGCCAAGGGAACTAAGGTGACCGATGTGGCTAAGTTGGACAATGATCGCTTGCTGATGCTGAAAGAAGGGCAGCTCTTCATCGGAAAAGAGACCGATAACCTGCAAGATCCGGCCGCATGGACAGCCTTGTCTTTGAATTTGCCGATGGGCTCGGTCACCGGTCTGGGCATTGTCGGGGAAGACATCTGTTTCCTGCTCGCCGATGGCCGTGTATATGTCGCTGCAAACCAATCGTTTGAGCCGGAGCTATTGCTCTCTTCCTCCGCCGATTCACGACTGTATGTGACGGATCGTGGTCTGTTCATCTGTGCCGAGAATCGAATTTATTTCATAGAAAAAGGTCGCAAAACGACACAATTTCCTATAGCCGACGTCCTTGGTGTCGGTGCCATGAACGAAAGCAATACGGCATACATAGCATTGGGAGAAGAAGGTTTGGCTTCACTTCTTCTCGCAGAGGGAAGTACGGCCGAAGCCATGCCTGTAGCATTCGACGGACCGGGGGACAATGATTTCTACGAGATGCGGTTTAGTCACGGACGTCTGTATGCAGCCAGCGGACTCTGGGGAACAAACCTGATGGGACATGCCGGTATGGTGAAGCTATACGACGGCAACCGATGGACTAACTTCGACAAGAAGACCGTACAGGAACAGTTGGGCGGCGGATTCAGTTTCAATGATGCTATCGATATAGCTGTTTCCAACGGAGACCCCGATCACTTTTTTGTCGGTACATGGGGAAACGGTCTGTTCGAATTCAAGGATGGCAAAGCGATAGCTCGCTATTCGGGAAACGAAACTGCTATCGCAGAATGTAATCCCGGAGATGCCCGTGTGAAAGCGATTGCCTTTGACAATAAGGGCAACCTCTGGGGGACGCTCGGTGCCGTAGGCAAGAACATCTTCATGTACGATCCGCAGAGTAGCACATGGCATTCTTTCAGCTATCCGGATGTAGCCAATCTGGCCTCCTTCGGCAATATGATTATCCTACCCAACGGAGACAAATGGGTAAATATCCTTCACCGTAGTGGCGGATCCACGCGCAAAGGTGTCTTGATCTTCAACGATCGGGGTACACCGGAAACGACTTCGGACGACAGCCATCTTTACGTCGAGCAGTTTGTCAATCGCCTCGGGGCAGCCATAGGACATAAGACTATCTATGCAATGGCCGTCGATCATAACGGCTCTGTCTGGATGGGATCGGATATAGGCATTTTCGGCGTCTACAATGCAGCCGGAGTATTGTCCTCGACTTCTACCCCTATCGCTGTTCGGCCGGTCGGAGGAGAAGAACCCAATTTGTACTATGTGCTGGACAAGGTGACGGTGACAGACATCGTCGTGGACAAACTCAATCACAAATGGGTTGCCACCCAAGGGACAGGACTCTATCTCCTTTCGGAAGATTGCAGTAAGATCCTCGCGCAATTTACCGTAGAAAACAGCCCTTTGCTTTCTAACAACATACTATCCCTGGCCTTAAATGACGATAACGGACTGCTGTACATCGGTACGGCGGACGGACTGATGACGTTCCAAACGGGTACGGGGAGTGGATCAGCTTCCGAACTGGACGGCGTCTATGTATACCCCAATCCGCTAAGGCCGGAATATCCCGATGGCGTCACCATTGCCGGACTGCAAGCCGGCTGTAGTGTCAAAATCACCGATACCACCGGCAGACTGCTATACCAGACTGAGAGCGTAACCACCGAAGTCAAATGGAATGCTCGAGGTGCCGATGGCAATAGGGTAGCTTCGGGCGTATATGCCGTTGCAGTGTACGATCCGGTATCGAAAAAGTCCAAACTAATTCGCTTCGCAGTGATTCGC","4.90","-18.62","83702","MCKIRFSLLQALVVCLLFTSFSLQAQEEGIWNTLLAIHKTEKAVETPKKVFAVANGVLYSVGKEAPHEAKIFDRISGLSDTSVSSIAYSEQLKSLVIYYASGNIDILDEAGRVTNVPALKDNIDLIDKTLNRLLIVGNRAYLAGGFGLSVLDVAEARIPATYAKGTKVTDVAKLDNDRLLMLKEGQLFIGKETDNLQDPAAWTALSLNLPMGSVTGLGIVGEDICFLLADGRVYVAANQSFEPELLLSSSADSRLYVTDRGLFICAENRIYFIEKGRKTTQFPIADVLGVGAMNESNTAYIALGEEGLASLLLAEGSTAEAMPVAFDGPGDNDFYEMRFSHGRLYAASGLWGTNLMGHAGMVKLYDGNRWTNFDKKTVQEQLGGGFSFNDAIDIAVSNGDPDHFFVGTWGNGLFEFKDGKAIARYSGNETAIAECNPGDARVKAIAFDNKGNLWGTLGAVGKNIFMYDPQSSTWHSFSYPDVANLASFGNMIILPNGDKWVNILHRSGGSTRKGVLIFNDRGTPETTSDDSHLYVEQFVNRLGAAIGHKTIYAMAVDHNGSVWMGSDIGIFGVYNAAGVLSSTSTPIAVRPVGGEEPNLYYVLDKVTVTDIVVDKLNHKWVATQGTGLYLLSEDCSKILAQFTVENSPLLSNNILSLALNDDNGLLYIGTADGLMTFQTGTGSGSASELDGVYVYPNPLRPEYPDGVTIAGLQAGCSVKITDTTGRLLYQTESVTTEVKWNARGADGNRVASGVYAVAVYDPVSKKSKLIRFAVIR","1682880 1685207","TIGR ID: PG1604","immunoreactive 84kD antigen PG93","Outer membrane, Cytoplasm","PG1403 is identical to a previously sequenced P.gingivalis protein in GenBank, AAD51078.","
InterPro
IPR011041
Domain
Soluble quinoprotein glucose dehydrogenase
SSF50952\"[141-485]TQuino_gluc_DH
InterPro
IPR011044
Domain
Quinoprotein amine dehydrogenase, beta chain-like
SSF50969\"[324-673]TAmine_DH_B_like


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Mar 20 09:35:01 MST 2001","Tue Mar 20 09:35:01 MST 2001","Thu Feb 22 16:00:24 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 20 09:35:01 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon May 14 16:11:51 MDT 2001","34541255","Tue Mar 20 09:35:01 MST 2001","Ross,B.C., Barr,I., Patterson,M., Agius,C., Rothel,L., Margetts,M., Hocking,D. and Webb,E. Porphyromonas gingivalis polypeptides and nucleic acids. Patent: Australia (AU 98/01023)-PCT 10-DEC-1998; CSL Ltd; 45 Poplar Road; R&D; Parkville, Victoria; Australia.","","Tue Mar 20 09:35:01 MST 2001","","1","","","PG1604" "PG1404","1685322","1686662","1341","ATGCAGGCTCAGAATGCAAAAGGAGCTCTCACACCCAAAGTGCTCGAAGAGATCCGCTCATCTTATGCCGGCACACCGGCCGATAGAGCTTTGCGCAATGCAGTCATAGCTAACGGTATGACCTTTACAAACAGTGCCAAGACGGATTTTCCCGATGCTCAGTTTAGCCATCGTGTCCAAAGCAAAGGCATATCCGATCAGCAGCAAAGTGGCCGTTGCTGGCTCTTCACCGGCATGAATGTCCTGCGATCAAGGATGATAACGGACAACAATATGGATTCTTTCTTCTTCTCCCACAACTATTCGTTCTTTTGGGATCAATTGGAGAAATCCAACCTCTTCTTGCAAGGGATAATCGACACCAGAAACAAACCGATTGACGACAAAATGGTGGAATGGCTCTTCAAAAACCCGATTGGCGACGGCGGACAATACACCGGCGTATCGGAGAATCTGATGAAGTACGGTCTCGTACCTGCCGAGGTGATGCCCGAGACTCGCAATAGCAACAACACCACATCCCTCAACCGCATCCTCTCCAAAGTACTGCGCCAAGGTGGTATGCGCTTGCGTCAGGCTGCCGAAAAGGGAGCCGGTGAGGCGAAGCTGGAAGCACAGAAGAAAGACATTCTCAAGCGTGTCTATCGCCTGCTCATCATGAACCTCGGAGAGCCTCCCACGGAATTTACCTGGAGCATGCGCGATGCATCCGGCAAGGTGATCTCTACACAGAAATACACACCGCAGAGCTTCTTCAAGCAGTTTGTGCATGAAGATATGCGCGAGGATTACGTCATGATCATGAACGATCCCAGTCGTCCTTACTACAAGCTCTTTGAGATCGACTACGACCGCCACAACTACGACGGCAAGAACTGGACATACGTGAATGTACCGATGGAAGACCTCAAGCAGATGGCTATCGCATCCATCAAGGACAGCACCATGATGTACTACTCTTGCGATGTTGGTAAGGAGTTGGATCGTACTCGTGGCATATTGGCTATGGACAATAACGACTATGCCTCACTGCTCGGCGAAGAGTTCACGCTCAACAAGAAGGAACGCATACAGACATTCGATAGTGGTTCTACGCACGCCATGACACTTATGGCAGTGGATCTGGACGCGAACGGCAAGCCCACCAAATGGATGGTAGAGAACAGTTGGGGAGCCAACAACGGTGCACAGGGTCACCTGATCATCACTGACGAATGGTTCGATGCCTATACATTCCGTTTGGTTGTAAACAAGAGGTATGTACCGGCCAAGGTGCTCGACATCCTGAAGACCACGCCCATACGCCTGCCCGCATGGGATCCCATGTTTGCCCCCGAGCAA","7.60","1.38","51174","MQAQNAKGALTPKVLEEIRSSYAGTPADRALRNAVIANGMTFTNSAKTDFPDAQFSHRVQSKGISDQQQSGRCWLFTGMNVLRSRMITDNNMDSFFFSHNYSFFWDQLEKSNLFLQGIIDTRNKPIDDKMVEWLFKNPIGDGGQYTGVSENLMKYGLVPAEVMPETRNSNNTTSLNRILSKVLRQGGMRLRQAAEKGAGEAKLEAQKKDILKRVYRLLIMNLGEPPTEFTWSMRDASGKVISTQKYTPQSFFKQFVHEDMREDYVMIMNDPSRPYYKLFEIDYDRHNYDGKNWTYVNVPMEDLKQMAIASIKDSTMMYYSCDVGKELDRTRGILAMDNNDYASLLGEEFTLNKKERIQTFDSGSTHAMTLMAVDLDANGKPTKWMVENSWGANNGAQGHLIITDEWFDAYTFRLVVNKRYVPAKVLDILKTTPIRLPAWDPMFAPEQ","1685262 1686662","TIGR ID: PG1605","cysteine aminopeptidase C","Periplasm, Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 15-444 are 35% similar to embCAA56689.1 cysteine aminopeptidase of Lactobacillus delbrueckii, residues 9-442 are 36% similar to embCAA82960.1 aminopeptidase C of Streptococcus thermophilus, residues 55-444 are 37% similar to gbAAH03616.1AAH03616 bleomycin hydrolase of Homo sapiens.This sequence is similar to BT1161.","
InterPro
IPR000169
Active_site
Peptidase, cysteine peptidase active site
PS00139\"[67-78]?THIOL_PROTEASE_CYS
InterPro
IPR004134
Family
Peptidase C1B, bleomycin hydrolase
PIRSF005700\"[6-447]TPepC
PTHR10363\"[2-447]TPeptidase_C1B
PF03051\"[9-443]TPeptidase_C1_2
noIPR
unintegrated
unintegrated
G3DSA:3.90.70.10\"[54-446]TG3DSA:3.90.70.10
PTHR10363:SF3\"[2-447]TPTHR10363:SF3
SSF54001\"[16-446]TSSF54001


","No hit to the COGs database.","***** IPB000169 (Eukaryotic thiol (cysteine) proteases active sites) with a combined E-value of 1.1e-06. IPB000169B 67-76 IPB000169H 383-399","Residues 15-442 are 32% similar to a (AMINOPEPTIDASE HYDROLASE THIOL PROTEASE C BLEOMYCIN BLM) protein domain (PD005921) which is seen in PEPC_LACDL.","","Thu Jun 14 11:56:08 MDT 2001","","Thu Jun 14 11:56:08 MDT 2001","Thu Jun 14 11:56:08 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:56:08 MDT 2001","Thu Jun 14 11:56:08 MDT 2001","","","Tue Mar 20 10:17:18 MST 2001","Fri Jul 25 17:21:07 2008","Thu Feb 22 16:11:09 MST 2001","Mon Jun 25 16:46:27 MDT 2001","Mon Jun 25 16:46:27 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 64-425 are 22% similar to PG1564, a hypothetical protein.","Mon Jun 25 16:46:27 MDT 2001","Fri Jul 25 17:21:07 2008","-56% similar to PDB:1CB5 HUMAN BLEOMYCIN HYDROLASE. (E_value = 4.7E_70);-55% similar to PDB:2CB5 HUMAN BLEOMYCIN HYDROLASE, C73S/DELE455 MUTANT (E_value = 6.8E_69);-51% similar to PDB:1GCB GAL6, YEAST BLEOMYCIN HYDROLASE DNA-BINDING PROTEASE (THIOL) (E_value = 1.7E_48);-51% similar to PDB:1A6R GAL6 (YEAST BLEOMYCIN HYDROLASE) MUTANT C73A (E_value = 1.9E_47);-51% similar to PDB:3GCB GAL6 (YEAST BLEOMYCIN HYDROLASE) MUTANT C73A/DELTAK454 (E_value = 1.9E_47);","","","Residues 9 to 443 (E-value = 4.1e-131) place PG1404 in the Pept_C1-like family which is described as Peptidase C1-like family (PF03051)","Mon Jun 25 16:46:27 MDT 2001","34541256","","","Klein,J.R., Henrich,B. and Plapp,R. 1994. Cloning and nucleotide sequence analysis of the Lactobacillus delbrueckii ssp. lactis DSM7290 cysteine aminopeptidase gene pepC. FEMS Microbiol. Lett. 124 (3): 291-299. PubMed: 7851736.","","Fri Jul 25 17:21:07 2008","1","","","PG1605" "PG1405","1687718","1686999","720","ATGAAGAGTAAATGGATATTTATACAATGGTTTAAATATAATAATATAAGAATGAAAGACGAATCTACAAATAAATTTGGCTCCTTGAATTTAGCGGTTCTTGTCCTTTCCGTTTATGTTCTTGGTGCATTGATCGTTGATACGACTATAAAGTTGCCCGAAGAAACTTCCCGACTTCTGAATTATATTGATCTTGCTATTTGTATATTCTTTTTTGTTGAGTTTTGTATCAGGTTGTACCATGCTGATAGTAAGATGAAGTTTATGCGTTGGGGTTGGATTGATTTGGTTTCGAGTATCCCGATGATAAATTTTTTGCGGTTTGGTCGAGTTTTTAGATTGATTCGTCTATTCCGAATTTTGAGAGCTTTTCGCACCACAAAGGAATTTGTTACCTATGTTTTTAGAATCAAAGCACAGGGCGCATTTACTTCAGCCACGATTTTAGCCATCTTATTGATCATTTTCTCTTCCATAGCGATTCTTCAAGTCGAAAATGCGTCGACCAGCAATATCACAACAGCGGAAGATGCTATTTGGTGGTCTTACGTTACGATCACAACTGTCGGCTATGGAGACAAATACCCCGTAACAACCGAAGGAAGAATCATTGCAATGTTTTTGATGACTGCAGGAGTAGGGCTTTTCGGAACTTTTACAGCCTATATTGCTTCCTTATTTGTCTCAGATAACAAAAAAGAAGAAACAGAAACAAAAGAA","10.30","8.14","27637","MKSKWIFIQWFKYNNIRMKDESTNKFGSLNLAVLVLSVYVLGALIVDTTIKLPEETSRLLNYIDLAICIFFFVEFCIRLYHADSKMKFMRWGWIDLVSSIPMINFLRFGRVFRLIRLFRILRAFRTTKEFVTYVFRIKAQGAFTSATILAILLIIFSSIAILQVENASTSNITTAEDAIWWSYVTITTVGYGDKYPVTTEGRIIAMFLMTAGVGLFGTFTAYIASLFVSDNKKEETETKE","1687742 1686999","TIGR ID: PG1606","probable voltage-gated potassium channel (potassium channel protein)","Inner membrane, Cytoplasm","Residues 33-235 have 33% similarity to AE004359, V. cholerae potassium channel protein, putative.Residues 17-239 have 26% similarity to AL391041, S. coelicolor putative ion transport integral membrane protein.Residues 40-227 have 28% similarity to AF263835, S. Lividans voltage-gated potassium channel KCNQ5.","
InterPro
IPR003091
Family
Voltage-dependent potassium channel
PR00169\"[55-75]T\"[114-140]T\"[172-194]T\"[201-227]TKCHANNEL
InterPro
IPR013099
Domain
Ion transport 2
PF07885\"[148-229]TIon_trans_2
noIPR
unintegrated
unintegrated
G3DSA:1.10.287.70\"[135-237]TG3DSA:1.10.287.70
PTHR11537\"[153-240]TPTHR11537
PTHR11537:SF13\"[153-240]TPTHR11537:SF13
SSF81324\"[20-232]TSSF81324


","BeTs to 11 clades of COG1226COG name: Eukaryotic-type potassium channelsFunctional Class: PThe phylogenetic pattern of COG1226 is AMTKyQvCEbr-uj-------Number of proteins in this genome belonging to this COG is 1","***** PR00169 (Potassium channel signature) with a combined E-value of 1.6e-15. PR00169C 62-85 PR00169E 114-140 PR00169G 172-194***** PR01333 (Two pore domain K+ channel signature) with a combined E-value of 3.2e-07. PR01333A 184-212 PR01333B 187-196","Residues 167-228 are 50% similar to a (CHANNEL IONIC POTASSIUM PROTEIN TRANSMEMBRANE ION) protein domain (PD000141) which is seen in Q54397_STRLI.","","Thu Jun 14 11:56:24 MDT 2001","","Thu Jun 14 11:56:24 MDT 2001","Thu Jun 14 11:56:24 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:56:24 MDT 2001","Thu Jun 14 11:56:24 MDT 2001","","","Mon Jun 4 16:08:19 MDT 2001","Mon Jun 25 16:51:31 MDT 2001","Wed Feb 14 15:57:39 MST 2001","Mon Jun 25 16:51:31 MDT 2001","Mon Jun 25 16:51:31 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 26-234 have 28% similarity to PG1779, an ion transporter.","Mon Jun 25 16:51:31 MDT 2001","Mon May 14 16:20:46 MDT 2001","-65% similar to PDB:1ZWI Structure of mutant KcsA potassium channel (E_value = 2.2E_11);-65% similar to PDB:2ATK Structure of a mutant KcsA K+ channel (E_value = 2.2E_11);-65% similar to PDB:1BL8 POTASSIUM CHANNEL (KCSA) FROM STREPTOMYCES LIVIDANS (E_value = 3.7E_11);-65% similar to PDB:1F6G POTASSIUM CHANNEL (KCSA) FULL-LENGTH FOLD (E_value = 3.7E_11);-65% similar to PDB:1J95 KCSA potassium channel with TBA (tetrabutylammonium) and potassium (E_value = 3.7E_11);","","","Residues 59 to 223 (E-value = 2.7e-19) place PG1405 in the Ion_trans family which is described as Ion transport protein (PF00520)","Mon Jun 25 16:51:31 MDT 2001","34541257","","","","","","1","","","PG1606" "PG1406","1689929","1688781","1149","ATGACCGGATTCGGCAGCTTCTTAGCAAACAATATCGAGGTATTCCTCTCTTACACAGGCTTCGCCAATGCCACACTCGGCCACTTGGTGATGATTCTGGTCGGATTGCTATTCATTTTTCTGGCCATACGGTATGAGTTTGAGCCTATGTTGCTCATTCCGATCGGATTTGGAATCCTCATTGGTAATATCCCCTTCAAAGATGCCGGTCTGCAGATCGGTATTTACGAAGAAGGATCGGTGCTGAATATCCTCTATCAAGGGGTAACTAAAGGATGGTATCCGCCACTCATATTTTTGGGTATCGGTGCGATGACCGATTTCTCTGCTCTTATCGCTAATCCGAAGCTGATGTTGATCGGTGCGGCGGCGCAGTTCGGTATCTTCGGTGCCTACATATTGGCTTTGTATCTTGGGTTCGAACCCAATCAGGCCGGTGCTATCGGTATTATCGGAGGAGCAGATGGGCCTACGGCTATCTTTCTCTCGTCCAAGTTGGCTCCGAACTTGCTGGGTGCCATTGCAGTCTCTGCATACTCCTATATGGCCTTGGTGCCGATCATCCAACCTCCTATTATGCGTCTTCTGACCACGAAGAAGGAGCGTATGATTCGGATGAAACCGCCACGTGCCGTGTCTACTACGGAGAAGCAGATATTCCCGATCGTGGGGCTGCTGCTTACTACTTTTCTTGTGCCTTCGGGTTTGCCCTTGCTGGGAATGCTATTCTTCGGTAATATTTTGAAAGAAAGCGGTGTTACTCGCCGTTTGGCTGAGACGGCACGTGGCCCGTTGATCGATGTCATTACCATTCTTTTGGGCGTTACGGTGGGAGCTTCTACCCAGGCCACTCAGTTCCTGACATGGAACTCGATCAAGATTTTCATTTTGGGAGCTTTCTCTTTCATCATTGCTACGATGGCCGGTGTTTTGTTCGTGAAGATTCTCAACCTCTTCTTGCGACACAAGCTCAATCCATTGATCGGCAATGCAGGGGTTTCTGCTGTACCCGACTCTGCACGTATTTCACAGATCGAAGGCCTAAAGGCCGATCCGACAAACTACCTGCTGATGCATGCTATGGGACCTAATGTAGCCGGTGTGATCGGCTCGGCAGTTGCTGCCGGTATCCTACTCGGATTCCTCGCC","10.30","6.72","40679","MTGFGSFLANNIEVFLSYTGFANATLGHLVMILVGLLFIFLAIRYEFEPMLLIPIGFGILIGNIPFKDAGLQIGIYEEGSVLNILYQGVTKGWYPPLIFLGIGAMTDFSALIANPKLMLIGAAAQFGIFGAYILALYLGFEPNQAGAIGIIGGADGPTAIFLSSKLAPNLLGAIAVSAYSYMALVPIIQPPIMRLLTTKKERMIRMKPPRAVSTTEKQIFPIVGLLLTTFLVPSGLPLLGMLFFGNILKESGVTRRLAETARGPLIDVITILLGVTVGASTQATQFLTWNSIKIFILGAFSFIIATMAGVLFVKILNLFLRHKLNPLIGNAGVSAVPDSARISQIEGLKADPTNYLLMHAMGPNVAGVIGSAVAAGILLGFLA","1689929 1688781","The alpha subunits are PG1407 and PG0226.TIGR ID: PG1608","oxaloacetate decarboxylase beta subunit","Inner membrane, Cytoplasm","Numerous significant hits to decarboxylase proteins in gapped BLAST; e.g. residues 6-383 have 41% similarity to AE001753, T. maritima oxaloacetate decarboxylase, beta subunit, residues 19-364 have 45% similarity to AE004141, V. cholerae oxaloacetate decarboxylase, beta subunit, residues 15-364 have 44% similarity to AJ002015, P. modestum methylmalonyl-CoA decarboxylase, beta-subunit.This sequence is similar to BT1689. ","
InterPro
IPR005661
Family
Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit
PIRSF015658\"[8-383]TMmdB_OadB
PF03977\"[25-383]TOAD_beta
TIGR01109\"[27-377]TNa_pump_decarbB


","BeTs to 4 clades of COG1883COG name: Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunitFunctional Class: CThe phylogenetic pattern of COG1883 is a--k--v----------l---Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 268-364 are 56% similar to a (DECARBOXYLASE BETA SUBUNIT OXALOACETATE) protein domain (PD011639) which is seen in O54031_PROMO.Residues 15-267 are 40% similar to a (DECARBOXYLASE BETA OXALOACETATE LYASE) protein domain (PD009982) which is seen in O54031_PROMO.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Wed Mar 27 18:53:33 2002","Mon May 14 16:25:12 MDT 2001","Mon Dec 8 15:50:07 2003","Tue Mar 26 15:15:05 2002","","Fri Feb 23 09:07:14 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 20 10:30:26 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 25 to 383 (E-value = 2.9e-197) place PG1406 in the OAD_beta family which is described as Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit (PF03977)","Tue Mar 20 10:30:26 MST 2001","34541258","","","","","","1","","","PG1608" "PG1407","1690368","1689937","432","ATGAAAGAGTATAAATATAAAATCAACGGTAACGAATACAATGTCGTTATCAACAGCATCGAAGATGGATTGGCAGACATCGAAGTTAACGGTACTCCCTATAAGGTGGAAATACTTACCGAGAAGAAAAAAGCATCGAAGCCTGCAATCAAACATCCGACCGTCACGGCTGCACCTGTAGCAGCTGCACCCGTTGCTCCTGCAGTTTCAGCCGGAGGACAAGGTACAGGCGTCAAGTCTCCGCTTCCCGGTGTCATCCTTGACGTTTGCGTTAAGGTCGGAGACGAAGTCAAGGTCGGCCAAAAGGTTGCTGTTCTCGAAGCCATGAAGATGGAAAATAATATCAATGCGGATCGAGACGGTAAAATCGTTGCCGTGAAGGTCAACAAAGGCGATTCCATCCTCGAGGGTTCTGATATCGTTATAATCGGC","7.30","0.19","15020","MKEYKYKINGNEYNVVINSIEDGLADIEVNGTPYKVEILTEKKKASKPAIKHPTVTAAPVAAAPVAPAVSAGGQGTGVKSPLPGVILDVCVKVGDEVKVGQKVAVLEAMKMENNINADRDGKIVAVKVNKGDSILEGSDIVIIG","1690368 1689937","PG1407 is similar to the carboxyl terminal portion (~140 residues) of the alpha subunit of oxaloacetate decarboxylase. The beta subunit is immediately downstream at PG1406. Another probable alpha subunit of oxaloacetate decarboxylase is at PG0226.TIGR ID: PG1609","probable oxaloacetate decarboxylase alpha subunit","Periplasm, Inner membrane, Cytoplasm","Numerous weak hits in gapped BLAST; e.g. residues 75-141 are 46% similar to dbj|BAA29928.1| 571aa long hypothetical oxaloacetate decarboxylase alpha chain of Pyrococcus horikoshii, residues 78-141 are 43% similar to gb|AAH00140.1|AAH00140 propionyl Coenzyme A carboxylase, alpha polypeptide of Homo sapiens, residues 1-143 are 27% similar to gb|AAB89171.1| oxaloacetate decarboxylase, biotin carboxyl carrier subunit, putative of Archaeoglobus fulgidus.","
InterPro
IPR000089
Domain
Biotin/lipoyl attachment
PF00364\"[76-143]TBiotin_lipoyl
PS50968\"[76-143]TBIOTINYL_LIPOYL
InterPro
IPR001882
Binding_site
Biotin-binding site
PS00188\"[100-117]TBIOTIN
InterPro
IPR011053
Domain
Single hybrid motif
SSF51230\"[61-144]THybrid_motif
noIPR
unintegrated
unintegrated
G3DSA:2.40.50.100\"[68-144]TG3DSA:2.40.50.100
PTHR18866\"[8-60]T\"[79-144]TPTHR18866
PTHR18866:SF13\"[8-60]T\"[79-144]TPTHR18866:SF13


","BeTs to 15 clades of COG0511COG name: Biotin carboxyl carrier protein of acetyl-CoA carboxylaseFunctional Class: IThe phylogenetic pattern of COG0511 is AmtKYQvceBRhuj---linxNumber of proteins in this genome belonging to this COG is 2","***** IPB001882 (Biotin-requiring enzymes attachment site) with a combined E-value of 7e-24. IPB001882 81-126","Residues 82-141 are 46% similar to a (BIOTIN DIHYDROLIPOAMIDE PYRUVATE DEHYDROGENASE) protein domain (PD000268) which is seen in O58564_PYRHO.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Wed Mar 27 19:19:45 2002","Fri Jun 15 11:24:17 MDT 2001","Tue Mar 20 11:00:58 MST 2001","Wed Mar 27 19:09:25 2002","Fri Feb 23 09:23:09 MST 2001","Fri Feb 23 09:23:09 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 20 11:00:58 MST 2001","-70% similar to PDB:2D5D Structure of Biotin Carboxyl Carrier Protein (74Val start) from Pyrococcus horikoshi OT3 Ligand Free Form II (E_value = 3.0E_12);-70% similar to PDB:2EVB Structure of Biotin Carboxyl Carrier Protein (74Val start) from Pyrococcus horikoshi OT3 Ligand Free Form I (E_value = 3.0E_12);-61% similar to PDB:1DCZ BIOTIN CARBOXYL CARRIER DOMAIN OF TRANSCARBOXYLASE (TC 1.3S) (E_value = 4.0E_12);-61% similar to PDB:1DD2 BIOTIN CARBOXYL CARRIER DOMAIN OF TRANSCARBOXYLASE (TC 1.3S) (E_value = 4.0E_12);-61% similar to PDB:1O78 BIOTIN CARBOXYL CARRIER DOMAIN OF TRANSCARBOXYLASE (1.3S) [10-48] DELETION MUTANT (E_value = 4.0E_12);","","","Residues 76 to 143 (E-value = 8.3e-19) place PG1407 in the Biotin_lipoyl family which is described as Biotin-requiring enzyme (PF00364)","Tue Mar 20 11:00:58 MST 2001","34541259","","","","","","1","","","PG1609" "PG1407.1","1690400","1690768","369","ATGAGATTATTTAGGAAGCTGACGAAGCATAAGTGTCTTCATGCTCCAAGCAGAATGACGATGACGCTTGATCGTGAGCCTCATAGGTTCAGCATCATGAGCTTCATAGGTCTCTTGATAGAGAGCCACCGAGATAGCAGCATAGATGTCGTCCGTCATAGCTCCTTTCTTCGCCTTTCCGGTCTTGGGGGTAGTAGCTTTTGCTTTTTTAGTGGGGGCAGCTTTCTTATCTTTTTCTTTCATTGTCTATCATGTTTACTTGTGAACATATGCCTTTCGATAGGAGATCTCAGTCCATATATCTTAGAACTCCATGGTGAATACTTGCGCTCCACCCGTCGGATAGTCAATATGGCATTCTCAATATCA","","","14047","MRLFRKLTKHKCLHAPSRMTMTLDREPHRFSIMSFIGLLIESHRDSSIDVVRHSSFLRLSGLGGSSFCFFSGGSFLIFFFHCLSCLLVNICLSIGDLSPYILELHGEYLRSTRRIVNMAFSIS","","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
tmhmm\"[75-95]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG1408","1691580","1690642","939","ATGAATATTAGCAGGTTTAGCCATATCCTTCTGACTTTGTTTGTCATAGCCTCCGGACAGCTCTTTGCCCAGCAGGCAGCACAGCTTCGCTTGAATGAAGTGATGACCCTGAATGTGCACAACTATCAGGACAGCTATGGCAATCATAAGCCGTGGATTGAAATATACAATTCTTCAGCCGCTACGGTGGATATCAAAGGTTGTTATTTGACCGATGATCTATCCAAGTTGAAGAAGTATATGATTCCCAAAGGAGATGTTATGACTGCGATAAAACCGCATCAGCATCTACTCTTTTGGGCAGATAATGATCCGTACAAAGGAACTTTCCACCTGAACTTCACCCTCGACCCCGAAGTCTCCACCATCATTGCCTTGGTGGATGCAGACGGACGAACGATCATCGATAGCATCCGTATTCCTGCCGGTATCCCGGCTGACTGTAGTTACGGGCGTTTGATCGATGGGGTAGGAGAGATAGGGGATGCTTCTGCTTGGGATATATTGCCAAAGGTTACACCAAGCACCAACAACATAATTCTCGATTCGAATGCCAAACTGGATCGATTGAAGGAATCCGATCCTTTAGGCGGTATTATGACACTGACAGCTATGATGGTTGTCTTCTTCGGTCTGTTGGTGCTCTCCTTTGTCTTTTGGCTCATCGGCTCTCTCTCGATTCGGATATCCAATCGTAGAGCTATCGAGGCCGGTGCAGGTCTGCGCATGCGTTCAGCCACCCGCGCCGGTATAAGCGGCGAGGTCACTGCTGCTATCTGTATGGCTTTGAGCGAATCGCAGAATGACGTTCATGATATTGAGAATGCCATATTGACTATCCGACGGGTGGAGCGCAAGTATTCACCATGGAGTTCTAAGATATATGGACTGAGATCTCCTATCGAAAGGCATATGTTCACAAGTAAACATGATAGACAA","7.60","2.03","34813","MNISRFSHILLTLFVIASGQLFAQQAAQLRLNEVMTLNVHNYQDSYGNHKPWIEIYNSSAATVDIKGCYLTDDLSKLKKYMIPKGDVMTAIKPHQHLLFWADNDPYKGTFHLNFTLDPEVSTIIALVDADGRTIIDSIRIPAGIPADCSYGRLIDGVGEIGDASAWDILPKVTPSTNNIILDSNAKLDRLKESDPLGGIMTLTAMMVVFFGLLVLSFVFWLIGSLSIRISNRRAIEAGAGLRMRSATRAGISGEVTAAICMALSESQNDVHDIENAILTIRRVERKYSPWSSKIYGLRSPIERHMFTSKHDRQ","1691580 1690642","TIGR ID: PG1611","conserved hypothetical protein","Inner membrane, Cytoplasm","This sequence corresponds to gi:34397577 in Genbank.Its nearest neighbor in the NR database is gi:53714576 from Bacteroides fragilis YCH46.","
noIPR
unintegrated
unintegrated
signalp\"[1-23]?signal-peptide
tmhmm\"[203-223]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Mar 8 14:05:07 2005","Tue Mar 8 14:05:07 2005","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 8 14:05:07 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541261","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Tue Mar 8 14:05:07 2005","","1","","","PG1611" "PG1409","1693158","1691608","1551","ATGAGTTTTCAACTGGAAAGAGTAAAAGAGCTGATCCAATTGCGTGAAAAAGCTCGCCTTGGTGGTGGAGAAAAGAGAATTGAGGCCCAGCACCAAAAAGGTAAATACACCGCTCGTGAACGTATAGCAATGCTGTTGGACGAGGGTAGCTTCGAGGAATTGGATATGTTCGTCAAGCACCGTTGTACCAACTTCGGAATAGACAAGACACAATTCCTCGGCGATGGTGTAGTGGTCGGTAGTGGTACGATCGACGGCCGTTTGGTATATGTTTTCGCACAAGACTTCACCGTATTCGGTGGTGCTCTCTCGGAAATGCTTGCTTCCAAGATCTGTAAGGTGATGGAGCTGGCTATGCGTATGGGTGCTCCTGTGATCGGTCTGAACGATTCGGGCGGTGCACGTATTCAGGAAGGTGTGAATGCTCTTAAAGGATACGGTGAGATTTTCGAAAACAATATCCTTGCTTCCGGTGTGATTCCTCAGATTTCCGCCATTTTCGGCCCATGCGCCGGCGGTGCCGTGTATTCTCCGGCTCTGACAGACTTTACCATCATGTCGCGTGGTACGAGCTATATGTTCCTCACAGGCCCGAAGGTTGTAAAGACCGTAACGGGTGAGGATGTAACGCAGGAGCAGCTCGGAGGGGCAGACGTGCATGCCTCCAAGAGCGGTGTGGCTCATTTTGCAGTTAATAGTGAAGAAGACGGTATCCGTCTGATCCGCCACCTCTTGAGCTTCTTGCCCCAGAACAATCTGGAAGAGGCTCCCTATGTGGAGTGCGATGACCCCATCGATCGTCTGGAAGACTCATTGAACGAAATTATCCCCGACGAGGCTAACCGTCCTTACGATATGTACGAAGTGATCGGATCTATCGTAGACCATGGCGAATTCCTCGAAGTACATCGTGATTATGCCAGGAATATCATCGTTGGTTTTGCTCGCTTCAATGGCCAGAGCGTAGGTATCGTAGCCAACCAACCACAGGTGATGGCCGGCTGTCTCGACTCCAATGCATCACGTAAGGCAGCTCGTTTCGTCCGCTTCTGCGATGCTTTCAATATTCCTTTGGTTACTCTGGTGGATGTGCCGGGATTCTTGCCGGGTACAGGCCAGGAGTACAATGGTGTGATTACGCACGGAGCCAAGTTGCTCTATGCTTACGGTGAGGCTACTGTGCCTAAGGTAACGGTTACGTTGCGCAAGGCATACGGCGGTGCTTACATCGTGATGAGCTCTAAGCACTTGCGCAGTGACATCAACTATGCATGGCCCTCTGCTGAGATTGCAGTGATGGGTCCGAGCGGAGCTGTAGAAGTAATTTTTGCCAAAGAGGTGGCAGCAGCCGAGAATCCTCAACAAGCAGCATTGGAAAAGGAAGAAGAATATCGTCAGGCTTTTGCCAATCCGTACAATGCAGCCTCTTACGGCTACATGGATGATGTGATCGAGCCTCGCAATACTCGTTTCCGCATTATTCGTGCTCTTGAACAGCTTCGTACGAAAAAGCAAACTATTCCGGCTAAGAAACACGACAATGTGCCTCTT","5.50","-9.83","56658","MSFQLERVKELIQLREKARLGGGEKRIEAQHQKGKYTARERIAMLLDEGSFEELDMFVKHRCTNFGIDKTQFLGDGVVVGSGTIDGRLVYVFAQDFTVFGGALSEMLASKICKVMELAMRMGAPVIGLNDSGGARIQEGVNALKGYGEIFENNILASGVIPQISAIFGPCAGGAVYSPALTDFTIMSRGTSYMFLTGPKVVKTVTGEDVTQEQLGGADVHASKSGVAHFAVNSEEDGIRLIRHLLSFLPQNNLEEAPYVECDDPIDRLEDSLNEIIPDEANRPYDMYEVIGSIVDHGEFLEVHRDYARNIIVGFARFNGQSVGIVANQPQVMAGCLDSNASRKAARFVRFCDAFNIPLVTLVDVPGFLPGTGQEYNGVITHGAKLLYAYGEATVPKVTVTLRKAYGGAYIVMSSKHLRSDINYAWPSAEIAVMGPSGAVEVIFAKEVAAAENPQQAALEKEEEYRQAFANPYNAASYGYMDDVIEPRNTRFRIIRALEQLRTKKQTIPAKKHDNVPL","1693158 1691608","MD Catalytic activity: ATP + propionyl-CoA + CO(2) + H(2)O = ADP + orthophosphate + methylmalonyl-CoA. Pathway: key enzyme in the catabolic pathway of odd-chain fatty acids, isoleucine, threonine, methionine, and valine. See Takahashi et al, 2000.TIGR ID: PG1612","propionyl-CoA carboxylase beta subunit; methylmalonyl-CoA decarboxylase alpha subunit","Cytoplasm","Numerous significant hits to methylmalonyl-CoA decarboxylase alpha chain and propionyl-COA carboxylase beta chain in gapped BLAST; e.g. residues 6-517 are 61% similar to gb|AAG19817.1| methylmalonyl-CoA decarboxylase, subunit alpha of Halobacterium sp. NRC-1, residues 10-517 are 62% similar to pir||D71667 propionyl-COA carboxylase beta chain precursor of Rickettsia prowazekii, residues 6-517 are 59% similar to emb|CAA05137.1| methylmalonyl-CoA decarboxylase, alpha-subunit of Propionigenium modestum.This sequence is similar to BT1686.","
InterPro
IPR000022
Domain
Carboxyl transferase
PF01039\"[25-515]TCarboxyl_trans
InterPro
IPR011762
Domain
Acetyl-coenzyme A carboxyltransferase, N-terminal
PS50980\"[10-224]TCOA_CT_NTER
InterPro
IPR011763
Domain
Acetyl-coenzyme A carboxyltransferase, C-terminal
PS50989\"[225-509]TCOA_CT_CTER
noIPR
unintegrated
unintegrated
G3DSA:3.90.226.10\"[8-252]T\"[252-516]TG3DSA:3.90.226.10
PTHR22855\"[34-207]T\"[239-517]TPTHR22855
PTHR22855:SF14\"[34-207]T\"[239-517]TPTHR22855:SF14
SSF52096\"[4-517]TSSF52096


","BeTs to 6 clades of COG0825COG name: Acetyl-CoA carboxylase alpha subunitFunctional Class: IThe phylogenetic pattern of COG0825 is a--kyqvceBRhuj----inxNumber of proteins in this genome belonging to this COG is 1","***** BP01372 (CARBOXYLASE LIGASE BIOTIN ACETYL-COA P) with a combined E-value of 1.5e-78. BP01372A 86-136 BP01372B 293-329 BP01372C 356-400 BP01372A 319-369","Residues 8-164 are 32% similar to a (PROTEIN SUBUNIT GLUTACONYL-COA) protein domain (PD013404) which is seen in O49501_ARATH.Residues 166-309 are 60% similar to a (CARBOXYLASE LIGASE ACETYL-COA BIOTIN) protein domain (PD001372) which is seen in O86517_STRCO.Residues 95-164 are 71% similar to a (CARBOXYLASE BETA CHAIN TRANSFERASE) protein domain (PD001571) which is seen in O59018_PYRHO.Residues 37-94 are 68% similar to a (BETA PROPIONYL-COA CARBOXYLASE CHAIN) protein domain (PD003448) which is seen in Q57079_BBBBB.Residues 311-489 are 66% similar to a (CARBOXYLASE LIGASE TRANSFERASE SUBUNIT PROTEIN ALPHA A) protein domain (PD001720) which is seen in O28066_ARCFU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Thu Mar 28 15:13:17 2002","Wed May 23 16:54:26 MDT 2001","Mon Dec 8 15:48:53 2003","Thu Mar 28 15:13:17 2002","Tue Mar 20 11:27:41 MST 2001","Tue Mar 20 11:27:41 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 20 11:27:41 MST 2001","-77% similar to PDB:1X0U Crystal Structure of the carboxyl transferase subunit of putative PCC of Sulfolobus tokodaii (E_value = 2.1E_178);-76% similar to PDB:1VRG Crystal structure of propionyl-CoA carboxylase, beta subunit (TM0716) from THERMOTOGA MARITIMA at 2.30 A resolution (E_value = 1.8E_177);-72% similar to PDB:1XNW Acyl-CoA Carboxylase Beta Subunit from S. coelicolor (PccB), apo form #2, mutant D422I (E_value = 2.4E_169);-72% similar to PDB:1XNV Acyl-CoA Carboxylase Beta Subunit from S. coelicolor (PccB), apo form #1 (E_value = 1.5E_168);-72% similar to PDB:1XNY Biotin and propionyl-CoA bound to Acyl-CoA Carboxylase Beta Subunit from S. coelicolor (PccB) (E_value = 1.5E_168);","","","Residues 15 to 515 (E-value = 5.2e-297) place PG1409 in the Carboxyl_trans family which is described as Carboxyl transferase domain (PF01039)","Tue Mar 20 11:27:41 MST 2001","34541262","","Takahashi N, Sato T, Yamada T, Metabolic pathways for cytotoxic end product formation from glutamate- and aspartate-containing peptides by Porphyromonas gingivalis,J Bacteriol 2000 Sep;182(17):4704-10,PMID: 10940008.","","Thu Mar 28 15:13:17 2002","","1","","","PG1612" "PG1411","1693661","1693260","402","ATGAATTTATCTCACATCGAACATCTCGGTATTGCGGTCAAAAGTATCGAAGAAGCCCTCCCATACTACGAAAATGTATTGGGACTCAAGTGTTACAGCATTGAGGAAGTACCCGACCAAAAGGTGCGTACCGCATTTATGATGGTAGGGCAGACCAAGCTGGAATTGTTGGAGCCGACCTCTGACGAAAGCCCTATTGCCAAATTCATAGAAAAGCGTGGAGAAGGTATCCATCACATTGCTTTTTGTGTGGAAGATGCCAACGAAGCATTGGCCGATGCCGCCTCTAAAGGCATTAAGCTGATCGACGAAAAAGCTCGCAAAGGAGCAGAGGGCTTGAATATCGGTTTCTTGCACCCGAAGAGTACTATGGGTGTGCTGACCGAGGTATGTGATCATAAA","5.40","-5.70","14746","MNLSHIEHLGIAVKSIEEALPYYENVLGLKCYSIEEVPDQKVRTAFMMVGQTKLELLEPTSDESPIAKFIEKRGEGIHHIAFCVEDANEALADAASKGIKLIDEKARKGAEGLNIGFLHPKSTMGVLTEVCDHK","1693661 1693260 [Shorter 1808 393 99]","TIGR ID: PG1613","glyoxalase I related protein (lactoylglutathione lyase)","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 6-134 have 58% similiarity to AP000001, P. horikoshii glyoxalase I related protein, residues 6-134 have 57% similarity to AJ248283, P. abyssi lactoglutathione lyase (glyoxalase I), residues 6-134 have 48% similarity to AP001512, B. halodurans BH1468~unknown conserved protein.","
InterPro
IPR004360
Domain
Glyoxalase/bleomycin resistance protein/dioxygenase
PF00903\"[5-130]TGlyoxalase
noIPR
unintegrated
unintegrated
G3DSA:3.10.180.10\"[3-132]TG3DSA:3.10.180.10
PTHR21366\"[1-133]TPTHR21366
SSF54593\"[1-134]TSSF54593


","BeTs to 6 clades of COG0346COG name: Lactoylglutathione lyaseFunctional Class: EThe phylogenetic pattern of COG0346 is A-tky--CEBRh---------Number of proteins in this genome belonging to this COG is 2","***** IPB000325 (Glyoxalase I) with a combined E-value of 5.3e-14. IPB000325A 8-46 IPB000325C 76-104","Residues 6-132 are 58% similar to a (DIOXYGENASE 4-HYDROXYPHENYLPYRUVATE 4HPPD) protein domain (PD003486) which is seen in O58010_PYRHO.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon May 14 17:07:25 MDT 2001","Tue Mar 20 11:44:22 MST 2001","Fri Feb 23 11:15:10 MST 2001","Fri Feb 23 11:15:10 MST 2001","Fri Feb 23 11:15:10 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 20 11:44:22 MST 2001","-53% similar to PDB:1JC4 Crystal Structure of Se-Met Methylmalonyl-CoA Epimerase (E_value = 3.2E_15);-53% similar to PDB:1JC5 Crystal Structure of Native Methylmalonyl-CoA Epimerase (E_value = 3.2E_15);","","","Residues 5 to 130 (E-value = 2.8e-19) place PG1411 in the Glyoxalase family which is described as Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily (PF00903)","Tue Mar 20 11:44:22 MST 2001","34541263","","","","","","1","","","PG1613" "PG1412","1694648","1693896","753","ATGGATAAGAATATCAATATATCGGTTAAGGTTTGGCGTCAGAAGGGACCGAAGGAAAAAGGACACTTCGAGACGTATCAATTGCAAAACATTTCGCAAAGTGCCTCTTTCCTCGAAATGATGGATATCCTGAACGAGCAGTTGATCAAGGAGCATAAAGCTCCGGTGGTGTTCGACCACGACTGTCGCGAAGGTATTTGCGGTATGTGCTCACTCTACATCAATGGTCATCCCCACGGGCCGGACGATAGCATCACCACTTGTCAGCTGCACATGCGTCGTTTCGATGATGGTGATACGATCACGATAGAGCCTTGGCGCTCGGCCGGCTTCCCTGTGATCAGAGACCTCATGGTGGATCGCTCGGCTTATGACAAGATCATTCAGTCCGGCGGATTCGTTTCCGTCAATACGGGGGGTATCCCCGATGCCAACGCTATCCCCATTTCCAAGAAGAATGCGGATGAGGCCATGGATGCAGCGGCTTGTATCGGATGTGGAGCTTGTGCGGCAGCATGCAAGAACGGTTCGGCTATGCTCTTCGTATCGGCCAAGGTGAGCCAGTTGGCTCTTCTTCCGCAGGGACGTATCGAGGCTGCGCGCCGTGCCAAAGCTATGGTGGCCAAGATGGATGAACTCGGATTCGGGAACTGTACGAATACACGTGCATGTGAAATGGAATGCCCGAAGAACGTATCGATCAGCCACATTGCCCGTCTGAATAGGGAGTACATCGTCGCTAAGAATCGTGAC","7.30","1.16","27552","MDKNINISVKVWRQKGPKEKGHFETYQLQNISQSASFLEMMDILNEQLIKEHKAPVVFDHDCREGICGMCSLYINGHPHGPDDSITTCQLHMRRFDDGDTITIEPWRSAGFPVIRDLMVDRSAYDKIIQSGGFVSVNTGGIPDANAIPISKKNADEAMDAAACIGCGACAAACKNGSAMLFVSAKVSQLALLPQGRIEAARRAKAMVAKMDELGFGNCTNTRACEMECPKNVSISHIARLNREYIVAKNRD","Succinate dehydrogenase iron-sulfur component","The structure of this component in general consistsof the duplication of a domain of twenty six aminoacid residues; each of these domains contains fourcysteine residues that bind to a 4Fe-4S center. Theenzyme converts succinate to fumarate in a reductionreaction. In B.subtilis, the enzyme is a trimerconsisting of an iron-sulfur subunit, a flavoproteinand a cytochrome subunit. The flavoprotein subunit is immediately upstream at PG1413.TIGR ID: PG1614","succinate dehydrogenase iron-sulfur subunit","Cytoplasm, Periplasm","One significant hit and numerous weak hits to iron-sulfur proteins in gapped BLAST; e.g. residues 5-250 are 54% similar to emb|CAB63171.1| putative reductase iron-sulfur protein of Streptomyces coelicolor A3(2), residues 11-243 are 23% similar to emb|CAA69873.1| succinate dehydrogenase subunit B of Paenibacillus macerans, residues 51-243 are 25% similar to gb|AAA22747.1| iron-sulfur protein of Bacillus subtilis.This sequence is similar to CT591, a succinate dehydrogenase iron-sulfur component, and to BT3055.","
InterPro
IPR001041
Domain
Ferredoxin
SSF54292\"[2-120]TFerredoxin
InterPro
IPR001450
Domain
4Fe-4S ferredoxin, iron-sulfur binding
PR00353\"[156-167]T\"[223-234]T4FE4SFRDOXIN
PF00037\"[156-179]TFer4
InterPro
IPR004489
Family
Succinate dehydrogenase/fumarate reductase iron-sulfur protein
PIRSF000176\"[7-251]TFRD_IP
TIGR00384\"[9-241]TdhsB
InterPro
IPR006058
Binding_site
2Fe-2S ferredoxin, iron-sulfur binding site
PS00197\"[62-70]T2FE2S_FER_1
InterPro
IPR009051
Domain
Alpha-helical ferredoxin
SSF46548\"[120-248]THelical_ferredxn
InterPro
IPR012285
Domain
Fumarate reductase, C-terminal
G3DSA:1.10.1060.10\"[130-249]TFum_reductase_C
InterPro
IPR012675
Domain
Beta-grasp fold, ferredoxin-type
G3DSA:3.10.20.30\"[5-120]TFerredoxin_fold
noIPR
unintegrated
unintegrated
PTHR11921\"[19-251]TPTHR11921


","BeTs to 12 clades of COG0479COG name: Succinate dehydrogenase/fumarate reductase Fe-S proteinFunctional Class: CThe phylogenetic pattern of COG0479 is amt-yQ-CEbRhuj----inxNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 51-122 are 40% similar to a (IRON-SULFUR DEHYDROGENASE PROTEIN) protein domain (PD001472) which is seen in P70934_PAEMA.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","Wed Mar 22 15:46:03 MST 2000","Wed Mar 27 19:28:26 2002","Thu Apr 19 11:56:46 MDT 2001","Fri Dec 19 10:47:25 2003","Wed Mar 27 19:28:26 2002","","Thu Feb 22 18:44:42 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 20 12:01:24 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Apr 19 11:56:46 MDT 2001","34541264","","","Schirawski,J., Hankeln,T. and Unden,G. 1998. Expression of the succinate dehydrogenase genes (sdhCAB) from the facultatively anaerobic paenibacillus macerans during aerobic growth. Arch. Microbiol. 170 (4): 304-308. PubMed: .","","Tue Mar 20 12:01:24 MST 2001","1","","","PG1614" "PG1413","1696620","1694680","1941","ATGGCTACAATAAATTCCAAAATACCCGCCGGCCCGCTGAAAGACAAGTGGACCAACTATAAGGATCATCAGAAGCTGGTGAACCCGGCCAACAAACGTCGTCTGGATATTATCGTGGTCGGTACCGGCCTGGCCGGTGCTTCGGCTGCTGCTTCTTTCGGCGAGATGGGCTTCAATGTGCTTAACTTCTGCATACAGGATTCTCCTCGCCGTGCGCACTCCATCGCTGCACAGGGAGGTATCAATGCCGCCAAGAACTACCAGAACGACGGCGACTCCGTTTATCGACTCTTCTACGATACGATCAAAGGAGGTGACTATCGTGCTCGCGAGGCCAACGTATATCGTCTGGCCGAAGTGTCCAATGCCATTATAGACCAGTGTGTGGCTCAGGGTGTACCCTTTGCTCGCGAATACGGTGGCCTACTGGACAACCGTTCTTTCGGTGGAGCGCAGGTATCTCGTACTTTCTATGCTCGTGGTCAGACGGGACAGCAGTTGCTCCTCGGAGCCTATTCGGCTCTCTCCCGTCAGGTCGGTTTGGGTAAGGTGAAGCTTTATACTCGCTACGAGATGCTCGACGTGGTGCTTATCGACGGTCGTGCTCGCGGTATTCTGGCTCGCAATTTGGTGACGGGCAAGATCGAACGCTTTGCAGCACATGCCGTGGTAATTGCCACGGGTGGTTATGGCAATGCCTTCTTCCTTTCTACCAATGCAATGGCATCTAACGGCTCTGCCGCATGGCAGTGCTATAAGAAAGGTGCTTTCTTCGCCAATCCATGTATGGCTCAGATCCATCCCACTTGTATTCCCGTACACGGGGACTACCAGTCCAAGCTGACACTCATGTCCGAGTCACTCCGTAATGACGGTCGTATCTGGGTGCCTAAAGACATAGAGGATGCCGGACGTCTTCAGCGCGGTGAGATCAAAGGAAAAGACATTCCCGAAGAGAAGCGCGACTACTATCTGGAGCGTCGCTATCCGGCCTTCGGCAACCTGGTGCCTCGTGATGTGGCCAGCCGTGCTGCCAAAGAACGTTGCGATGCCGGTTATGGTGTGAACAATACGGGCCTTGCCGTATTCCTCGACTTCGGCGATGCCATCAAACGTTTGGGACGCGACGTGGTGGAGCAGAAGTACGGCAACCTCTTCCAGATGTATGAGAAGATCGCAGATGAGAATCCGTACGAAACGCCGATGATGATCTATCCGGCTATCCACTATACGATGGGTGGTCTCTGGGTGGATTACGAGCTGATGACTACCATCCCGGGCCTGTTTGCCATCGGAGAAGCCAACTTCTCTGATCACGGAGCCAACCGTCTCGGTGCTTCTGCTCTCATGCAGGGTCTGGCTGACGGTTACTTCGTTATTCCTTATACGATGCAGAACTATCTGGCCGATCAGATTCAGGTGCCGCGCTTCAGCACGGATCGTCCCGAATTCGAAGCTGCCGAGAAAGAGTTGCAAGACCGCATAACCCGTATCATGAATGTCAAAGGCAATAAGTCCGTGGACGACCTTCACAAGGAGCTGGGCCACATCATGTGGGACAATGTGGGAATGGGACGAGACAAAGCCGGTTTGGAAAAAGCCATTGTGAAGCTGGACGAGCTGAAGAAAGAGTTCTGGAGCAATGTCTATGTGCCGGGTGAAGCCAATGACCTTAACGTAGAGCTGGAGAAAGCCCTCCGATTGGCGGACTTCATCGAGATAGGTACGCTGATGGCGCACGATGCCATGGACCGCGAAGAAAGTTGTGGCGGTCATTTCCGTATCGAGCACCAGACAGAAGAGGGTGAAGCCAAACGTGACGATGAGAACTTCGCTTACGTTTCCTGTTGGGAATATCAGGGAGAAGACAAGGATCCGGTCATGTACAAGGAAGAACTGGTATATGAAGAGACTGTCCGTGCACAACGTAACTACAAGAGC","6.20","-6.42","72343","MATINSKIPAGPLKDKWTNYKDHQKLVNPANKRRLDIIVVGTGLAGASAAASFGEMGFNVLNFCIQDSPRRAHSIAAQGGINAAKNYQNDGDSVYRLFYDTIKGGDYRAREANVYRLAEVSNAIIDQCVAQGVPFAREYGGLLDNRSFGGAQVSRTFYARGQTGQQLLLGAYSALSRQVGLGKVKLYTRYEMLDVVLIDGRARGILARNLVTGKIERFAAHAVVIATGGYGNAFFLSTNAMASNGSAAWQCYKKGAFFANPCMAQIHPTCIPVHGDYQSKLTLMSESLRNDGRIWVPKDIEDAGRLQRGEIKGKDIPEEKRDYYLERRYPAFGNLVPRDVASRAAKERCDAGYGVNNTGLAVFLDFGDAIKRLGRDVVEQKYGNLFQMYEKIADENPYETPMMIYPAIHYTMGGLWVDYELMTTIPGLFAIGEANFSDHGANRLGASALMQGLADGYFVIPYTMQNYLADQIQVPRFSTDRPEFEAAEKELQDRITRIMNVKGNKSVDDLHKELGHIMWDNVGMGRDKAGLEKAIVKLDELKKEFWSNVYVPGEANDLNVELEKALRLADFIEIGTLMAHDAMDREESCGGHFRIEHQTEEGEAKRDDENFAYVSCWEYQGEDKDPVMYKEELVYEETVRAQRNYKS","","From Prosite PDOC00393: In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (EC 1.3.99.1): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulfur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein. The iron-sulfur subunit is immediately downstream at PG1412.TIGR ID: PG1615","fumarate reductase/succinate dehydrogenase flavoprotein subunit","Cytoplasm","This sequence is similar to CT592 and BT3054.Numerous significant hits to flavoproteins in gapped BLAST; e.g. residues 5-645 are 60% similar to emb|CAB63172.1| putative reductase flavoprotein subunit of Streptomyces coelicolor A3(2), residues 70-645 are 36% similar to dbj|BAB06811.1| succinate dehydrogenase flavoprotein subunit of Bacillus halodurans, residues 70-611 are 38% similar to emb|CAA69872.1| succinate dehydrogenase subunit A of Paenibacillus macerans.","
InterPro
IPR003953
Domain
Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal
PF00890\"[36-449]TFAD_binding_2
InterPro
IPR004112
Domain
Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal
PF02910\"[511-642]TSucc_DH_flav_C
SSF46977\"[502-645]TSucc_DH_flav_C
InterPro
IPR011280
Family
Succinate dehydrogenase or fumarate reductase, flavoprotein subunit, low-GC Gram-positive bacteria
PTHR11632:SF4\"[17-302]T\"[324-645]TSDH_A_Bsu
TIGR01811\"[37-645]TsdhA_Bsu
noIPR
unintegrated
unintegrated
G3DSA:1.20.58.100\"[481-601]TG3DSA:1.20.58.100
G3DSA:3.50.50.60\"[30-475]TG3DSA:3.50.50.60
PTHR11632\"[17-302]T\"[324-645]TPTHR11632
SSF51905\"[14-499]TSSF51905
SSF56425\"[261-410]TSSF56425


","BeTs to 13 clades of COG1053COG name: Succinate dehydrogenase/fumarate reductase, flavoprotein subunitsFunctional Class: CThe phylogenetic pattern of COG1053 is Amt-YqvcEbRhuj----inxNumber of proteins in this genome belonging to this COG is 1","***** IPB000464 (Fumarate reductase / succinate dehydrogenase FAD-binding site) with a combined E-value of 1.3e-60. IPB000464A 36-57 IPB000464B 61-87 IPB000464C 92-107 IPB000464D 122-146 IPB000464E 155-172 IPB000464F 244-293 IPB000464G 321-354 IPB000464H 392-422 IPB000464I 426-457 IPB000464J 560-602","Residues 141-461 are 44% similar to a (FLAVOPROTEIN SUBUNIT OXIDOREDUCTASE FAD DEHYDROGENASE) protein domain (PD001219) which is seen in DHSA_BACSU.Residues 70-135 are 45% similar to a (FLAVOPROTEIN SUBUNIT OXIDOREDUCTASE DEHYDROGENASE) protein domain (PD149640) which is seen in O84596_CHLTR.Residues 492-610 are 33% similar to a (FLAVOPROTEIN SUBUNIT DEHYDROGENASE OXIDOREDUCTASE) protein domain (PD001222) which is seen in O66855_AQUAE.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","Tue Mar 20 12:29:46 MST 2001","Thu Mar 28 15:19:50 2002","Thu Apr 19 11:59:52 MDT 2001","Fri Dec 19 10:45:09 2003","Wed Mar 27 19:29:52 2002","Thu Feb 22 18:45:15 MST 2001","Thu Feb 22 18:45:15 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 27-611 are 24% similar to PG1376, l-aspartate oxidase.","Thu Mar 15 14:43:50 MST 2001","Thu Mar 15 14:43:50 MST 2001","-48% similar to PDB:2B76 E. coli Quinol fumarate reductase FrdA E49Q mutation (E_value = 1.6E_53);-48% similar to PDB:1KF6 E. coli Quinol-Fumarate Reductase with Bound Inhibitor HQNO (E_value = 3.6E_53);-48% similar to PDB:1KFY QUINOL-FUMARATE REDUCTASE WITH QUINOL INHIBITOR 2-[1-(4-CHLORO-PHENYL)-ETHYL]-4,6-DINITRO-PHENOL (E_value = 3.6E_53);-48% similar to PDB:1L0V Quinol-Fumarate Reductase with Menaquinol Molecules (E_value = 3.6E_53);-46% similar to PDB:1E7P QUINOL:FUMARATE REDUCTASE FROM WOLINELLA SUCCINOGENES (E_value = 4.4E_51);","","","Residues 137 to 488 (E-value = 5.2e-51) place PG1413 in the FAD_binding_2 family which is described as FAD binding domain (PF00890)Residues 511 to 645 (E-value = 1.9e-17) place PG1413 in the Succ_DH_flav_C family which is described as Fumarate reductase/succinate dehydrogenase flavoprotein C-terminal domain (PF02910)","Fri Dec 19 10:45:09 2003","34541265","","","","","","1","","","PG1615" "PG1414","1697343","1696654","690","ATGTGGTTACTTAAATCCTCGATTGGCCGTAAAGTGGTGATGAGTGTCACCGGACTGGCGCTGATCCTGTTTTTGACGTTTCACATGTCCATGAACCTTGTGGCTCTCTTCTCGGCAGAGGCTTACAACATGATATGTGAGTTTCTCGGCGCCAACTGGTATGCTCTGGTCGCCTCCATCGGCTTGGCGGTGCTGATGCTTCTGCACATCGTGTATGCCTTTATCCTCAATGCGCAGAACCTTCGTGCTCGAGGTCGCGATCGCTATGCTGTTACGGGTAGACCTAAAGGAGTGGAGTGGAGCTCGCAGAACATGCTGGTGCTCGGTATCATCGTCCTGTTGGGTATCGGACTGCACATGTTCAACTTTTGGGCTAAGATGCAGTTGGCGGAAATCTGCCATATGGATGTAGCCGGATTCGGTATTGATGGTTTCGACCATCCGGCCAAGGGAGCAGAGCTGATCCGCTACACATTCAACCAACCGATCTACGTGGTGCTCTATGCCGTATGGCTGATTGCTTTGTGGTTCCACCTGACACATGGATTCTGGAGTGCACTGCAGACCTTGGGATGGAACAATACCATCTGGATGAATCGTGTCAAGTGCATCTCTAATGTGGTTTCTACCGTATTGGTAGGCGGTTTCGCTTTGGTCCTGATAGTATTTGCTTGTCAGGCATTCATCGGT","9.40","6.47","25724","MWLLKSSIGRKVVMSVTGLALILFLTFHMSMNLVALFSAEAYNMICEFLGANWYALVASIGLAVLMLLHIVYAFILNAQNLRARGRDRYAVTGRPKGVEWSSQNMLVLGIIVLLGIGLHMFNFWAKMQLAEICHMDVAGFGIDGFDHPAKGAELIRYTFNQPIYVVLYAVWLIALWFHLTHGFWSALQTLGWNNTIWMNRVKCISNVVSTVLVGGFALVLIVFACQAFIG","1697343 1696654","TIGR ID: PG1616","hypothetical protein","Inner membrane, Cytoplasm","No significant hits found using gapped BLAST search.","
InterPro
IPR011138
Family
Succinate dehydrogenase, cytochrome b558 subunit
TIGR02046\"[6-228]TsdhC_b558_fam
noIPR
unintegrated
unintegrated
SSF81343\"[1-227]TSSF81343


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Fri Feb 23 11:21:30 MST 2001","Fri Feb 23 11:21:30 MST 2001","Fri Feb 23 11:21:30 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Fri Feb 23 11:21:30 MST 2001","34541266","","","","","","1","","","PG1616" "PG1414.1","1697848","1697393","456","TTGCGGCGCGAGAAAAGAAAAAAAGTCGAACCAAAACGAAAAAAATCTCAGGCGCAAATTCTGGTTTTGCGGCGTGAGAATCGAAGGAGTTGCGGTTCCGAAATTGCTGTGGCAGGTTTCTGTCGTTTCGGACTCTCCTTTTTTATTTCCATAAGAGACGAAGGGGACGGAAGGCTTGTAATGGTGCCTTTTCTTTTTGTCTCCGAACGGCCAATATGTGCGGATGGCGATGTGCCTTGCAAGTATATGTATTTGAGTGGTTTATGTGGGGGATCGAGGTGTATCGGGATCGGTGGCATCCCAAACAATAGGGATAAGGGGAGACGATATGAAGGGGCTTTTTCCCTATATGTCGTGATTGTGTATTTTTTTCCGTTATCTTTGTGCACGAAGGTCGGAACACCTCTTCACAAGGCGGAATACAGAGTCGGTTTCGCCTATTGGTTGAATGGATCT","","","17168","LRREKRKKVEPKRKKSQAQILVLRRENRRSCGSEIAVAGFCRFGLSFFISIRDEGDGRLVMVPFLFVSERPICADGDVPCKYMYLSGLCGGSRCIGIGGIPNNRDKGRRYEGAFSLYVVIVYFFPLSLCTKVGTPLHKAEYRVGFAYWLNGS","","TIGR ID: PG1617","hypothetical protein","Inner membrane, Cytoplasm, Extracellular","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
tmhmm\"[112-130]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541267","","","","","","1","","","PG1617" "PG1415","1698046","1698729","684","ATGCAAAAAGAATTATTCCGGCAATCTCCGGATTCCAATAAACTCATTCTTTTTTTCAACGGCTGGGCTATGACCCGTGAAGCCGTTTCTCATTTGGCTATTCCTCCCGAATACGACTTGCTGCACGTGTGGGACTATCGAACGGATACGCTGCACTTCGATTGGTCGCCCTACCGCGAGATATGCTTGTCGGCATGGTCTATGGGCGTATGGGCGGCCGAAAGGCTTTCGAGAGAGGGGAGGCTGCCTTCGGTCGTTTCGGCTGTAGCGATATGCGGCACCGGCTATCCGATGGACGATACGATGGGAATACCCTTGGATATCTTCCGTGGTACGCTGGACGGTCTGACGGAAGAAAACCGCCTGCGATTCAACAGGCGGATGTGCGGAGGCAAATCGCTGAAACACCTGTTAGAGGCACTGGCAGCGCGGGAAACCGACGAAATTAAAGCAGAGTTGGGACGCGTCTACGAGGAAGAGGAGAAGAGGCTGAAAAGCGATGATCCTCACCCTGTCGCTCCGCTTAGCTGGGATAAAGCTCTGATAGGAGCAAAGGATCGGATCATACCGGCTAAGAATCAACAGGCTTTTTGGCAGATGCGAGGCTGTCGGAACATAGAGACCGTAGCGGAAGGCGATCACTATTTGTTTAACCGTTTCACCGAATGGGAGCAGCTTTGGAGT","5.70","-4.73","26404","MQKELFRQSPDSNKLILFFNGWAMTREAVSHLAIPPEYDLLHVWDYRTDTLHFDWSPYREICLSAWSMGVWAAERLSREGRLPSVVSAVAICGTGYPMDDTMGIPLDIFRGTLDGLTEENRLRFNRRMCGGKSLKHLLEALAARETDEIKAELGRVYEEEEKRLKSDDPHPVAPLSWDKALIGAKDRIIPAKNQQAFWQMRGCRNIETVAEGDHYLFNRFTEWEQLWS","1697980 1698729","TIGR ID: PG1618","conserved hypothetical protein","Cytoplasm","Residues 15-227 have 44% similarity to U32830, H. influenzae predicted coding region HI1552.Residues 15-228 have 44% similarity to AL162757, N. meningitidis conserved hypothetical protein.Residues 9-227 have 44% similarity to AE006227, P. multocida unknown protein.","
InterPro
IPR007398
Family
Protein of unknown function DUF452
PF04301\"[1-226]TDUF452
noIPR
unintegrated
unintegrated
PD112097\"[1-226]TPD112097
SSF53474\"[12-218]TSSF53474


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 15-227 are 43% similar to a (HYPOTHETICAL PROTEIN HI1552) protein domain (PD112097) which is seen in YF52_HAEIN.","","Thu Jun 14 11:56:58 MDT 2001","","Thu Jun 14 11:56:58 MDT 2001","Thu Jun 14 11:56:58 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:56:58 MDT 2001","Thu Jun 14 11:56:58 MDT 2001","","","Fri Feb 23 14:00:48 MST 2001","Mon Jun 25 16:53:25 MDT 2001","Fri Feb 23 14:00:48 MST 2001","","Mon Jun 25 16:53:25 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Apr 5 15:44:57 MDT 2001","-59% similar to PDB:2FGE Crystal structure of presequence protease PreP from Arabidopsis thaliana (E_value = );-57% similar to PDB:1HM6 X-RAY STRUCTURE OF FULL-LENGTH ANNEXIN 1 (E_value = );-57% similar to PDB:1MCX STRUCTURE OF FULL-LENGTH ANNEXIN A1 IN THE PRESENCE OF CALCIUM (E_value = );","","","Residues 1 to 226 (E-value = 1.1e-61) place PG1415 in the DUF452 family which is described as Protein of unknown function (DUF452) (PF04301)","Mon Jun 25 16:53:25 MDT 2001","34541268","","","","","","1","","","PG1618" "PG1416","1698711","1699475","765","ATGGGAGCAGCTTTGGAGTTGAGAGAGGTAGACAGCGAACTGGTCATCAAACGGTTTACTTCGGCTTTGCCCTACTACGAGAAGTATGCCGTGGCGCAGCATCGTATAGGGGAGCGGCTGGCCGATCTTCTAACGGCTACGGGGCGTCACCATTTCGAACATGTGCTGGAATACGGCTGCGGCTGCGGTGTCTATACGCGCCAACTGGCTCAAACCGTTACGGTAAAGCAGTGGACGCTCAATGATTTATGCCCGGTCTGCGAGGAGTATATACGCGTAAGCCCTGTTTCTTTCTATGCAGGCGAAGCCGAGACAATGCCCCACACGGATACTTACGATCTGATCACCTCGGCATCGGCCTTTCAGTGGTTCAAGGATCCGGAGTCATTCATTCGGACGGTGGCAGGCTTGTTGCGTCCCGATGGCATCTTTCTCTTCAATACTTTCTCTCCCGACAATCTTCCCGAGATAAGAACGATCACAAACCGAGGGCTGCACTATCCTTCGACAGAGGCACTGATGAAATGGCTGGGGGCTGCTTTTTCTGCTGTGTATAAGCATGAGGAGCAGATTGTACTGACGTTCGATTCGCCTCGCGATGTACTCATGCACCTGAAGCGCACAGGCGTTACAGCGACACCCCGACACGAAGAGGTATGGACACGGAGCCGATTGGCACGATTCGATCAGGCGTATCGGGAACGGTTCTCCACCCCGGACGGACAAGTTACGCTGACCTATACTCCACTTTATTTCCTTGCAAAG","6.60","-2.01","29213","MGAALELREVDSELVIKRFTSALPYYEKYAVAQHRIGERLADLLTATGRHHFEHVLEYGCGCGVYTRQLAQTVTVKQWTLNDLCPVCEEYIRVSPVSFYAGEAETMPHTDTYDLITSASAFQWFKDPESFIRTVAGLLRPDGIFLFNTFSPDNLPEIRTITNRGLHYPSTEALMKWLGAAFSAVYKHEEQIVLTFDSPRDVLMHLKRTGVTATPRHEEVWTRSRLARFDQAYRERFSTPDGQVTLTYTPLYFLAK","1698711 1699475","TIGR ID: PG1619","biotin synthesis protein BioC","Cytoplasm","Residues 10-255 have 41% similarity to AE006227, P. multocida BioC.Residues 7-255 have 39% similarity to AL162757, N. meningitidis conserved hypothetical protein.Residues 7-255 have 38% similarity to U32830, H. influenzae biotin synthesis protein, putative.","
InterPro
IPR011814
Family
Biotin biosynthesis protein BioC
TIGR02072\"[18-255]TBioC
InterPro
IPR013216
Domain
Methyltransferase type 11
PF08241\"[56-146]TMethyltransf_11
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.150\"[54-167]TG3DSA:3.40.50.150
PTHR10108\"[8-163]TPTHR10108
SSF53335\"[34-255]TSSF53335


","BeTs to 8 clades of COG0500COG name: SAM-dependent methyltransferasesFunctional Class: RThe phylogenetic pattern of COG0500 is AMTKYQVCEBRHUJgPOLINXNumber of proteins in this genome belonging to this COG is 7","No significant hit to the Blocks database.","Residues 7-255 are 38% similar to a (PUTATIVE BIOTIN SYNTHESIS PROTEIN) protein domain (PD122671) which is seen in BIOC_HAEIN.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Fri Feb 23 14:17:28 MST 2001","Fri Feb 23 14:17:28 MST 2001","Fri Feb 23 14:17:28 MST 2001","","Fri Feb 23 14:17:28 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon May 14 17:19:11 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon May 14 17:19:11 MDT 2001","34541269","","","","","","1","","","PG1619" "PG1417","1700584","1699511","1074","ATGATTAGAACGACGATGAAGAGATTGCTCGCTATCCTCCTGTCTGCATTGGCTTTCAGCTCATGCTCCACGAAGGAAGATTTTACCTTCGACCCCTATCGGAACTACGATGCTCTATGGGAAATCTTGGATCGGGGATATTGTTTTTTCGATCTCAAACTGCCTGAGGACTCTACATGGCGGGATATGTATCACAAGCATTATAGGGACTTACATCCCCAAATGAGCAGTGACTCTCTCTTCCTCGTCATGACGCAACTCCTCTCCGAACTGAAAGACGGCCATGTCAATCTGAGCAGCTCGTTCGACTACGGCCATTATTGGAAATGGTACGAAGACTATCCTCTGAATCTGAGTCTCGACCTGAGACGCAAGTATTTGGGGCACGATTACCGTATAGCCGGCGGACTCAAATACCGCAGACTTACATACAACGGTCATGCTCCCGACAGTATCGGCTACATCGTCTACGAAAGCTTTGGGAAACCTATTTCCAATAGTAATATAAGCGGTATGCTTTCGCGGCTGACCGAGTGTAAGGCTCTGATCATCGACATTCGTGGCAATGGAGGAGGACAGCTTACTTATGCGGACGAATTTGCCCGTCACTTCACCAAGGAAAAGATGCTCACCGGCTATATCCGCCACAAAACCGGCCCGGCACACGATGCCTTTTCCGATCCTCTCCCCCTTTATTTGGACACGCTTTCTTCCGGAGTCGTATGGATGCGCCCCGTAGTACTACTGACGAATCGGGAAGTATTCAGCTCTGCCAATGATTTTGTTCTGAAGATGAGGTCCCTGCCTTTCGTCACCGTTATGGGCGATAAGACCGGCGGTGGTGCCGGATTGCCCATCTCATCGGAGATTCCTTGTGGTTGGGGTGTTCGTTACTCAGCCGGCAGGATGACCGATCCGAGTGGTGCAGATGTGGAGTTCGGGATAGAACCGCACTACTATGTCTCCCTCTTGGATAGCGACCTGGCCAATAGCCATGATACCCTCATCGAAGAAGCTGTACGATATATCAAAAGAAAAATAGCCGAGTACAACCAAAGCGGACAATGGATTAAG","6.90","-0.29","40887","MIRTTMKRLLAILLSALAFSSCSTKEDFTFDPYRNYDALWEILDRGYCFFDLKLPEDSTWRDMYHKHYRDLHPQMSSDSLFLVMTQLLSELKDGHVNLSSSFDYGHYWKWYEDYPLNLSLDLRRKYLGHDYRIAGGLKYRRLTYNGHAPDSIGYIVYESFGKPISNSNISGMLSRLTECKALIIDIRGNGGGQLTYADEFARHFTKEKMLTGYIRHKTGPAHDAFSDPLPLYLDTLSSGVVWMRPVVLLTNREVFSSANDFVLKMRSLPFVTVMGDKTGGGAGLPISSEIPCGWGVRYSAGRMTDPSGADVEFGIEPHYYVSLLDSDLANSHDTLIEEAVRYIKRKIAEYNQSGQWIK","1700584 1699511","TIGR ID: PG1620","hypothetical protein","Cytoplasm, Outer membrane","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR005151
Domain
Peptidase S41
PF03572\"[151-321]TPeptidase_S41
noIPR
unintegrated
unintegrated
G3DSA:3.90.226.10\"[129-353]TG3DSA:3.90.226.10
PS51257\"[1-22]TPROKAR_LIPOPROTEIN
SSF52096\"[31-346]TSSF52096


","BeTs to 8 clades of COG0793COG name: Periplasmic proteaseFunctional Class: MThe phylogenetic pattern of COG0793 is -----qvCeB-huj--olinxNumber of proteins in this genome belonging to this COG is 4","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Fri Feb 23 14:21:51 MST 2001","","Fri Feb 23 14:19:35 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 142-312 have 22% similarity to PG0942, probable tail-specific protease.","Fri Feb 23 14:19:35 MST 2001","","No significant hits to the PDB database (E-value < E-10).","","","Residues 149 to 323 (E-value = 8.4e-06) place PG1417 in the Peptidase_S41 family which is described as Peptidase family S41B (PF03572)","Fri Feb 23 14:19:35 MST 2001","34541270","","","","","","1","","","PG1620" "PG1418","1701524","1700580","945","ATGAAAACGAATAGACGATACGCATTTGTTTTGCCGCTTCTGCTACTCACCGGATTGTTGGCATGGGGGCAGGATTCTTCCCACGGTAGCAATACAGCGTTTGCAACTGATTCTTCGAGTAGAGAGTTGCCCACGGAGCAGTCCGCCTACCGCATTCATTCTGCCTATATGGTCGGTGGTGGCGGAAGCATAACGCGCGACACCTATTTGTCACCCCTTCGTTATGGAGGATGGACACTGAATTTGTTGGGAGAGAAGACGTTCCCTCTCAAAGCCTCCGATTCCCGTTGGATGATCCGTACCGGGCATGAGCTGGATTTTGCCCTGATGGACAATCCGGCCAATAATGCTCATTTCTATTCCCTGCTGTATAACGGTTCCGCTGCGGCTCTTTACCGCCTTGGCGCTAAGCATCTGCGAGCCGCGTGGATGGACAATCTGCGCTTGGCATTCGGCCCGGGCTTGGAAATCGGGCTTGGAGGAATTTATAGTACACGCAACGGCAATAATCCTGCGACATTGAAGCTCTACACCAATGCCATCGCCCAAGCCTCGATAGGATACTACGTCCCCTCCGAAACTTTTCCCCTGTATTTTCGGTTGCTCTCCCAGATCAATCTCTTCGGTATAGCCTATGGAAATGGTTTTGGTGAGAGCTATTACGAGAATTTTTTGCTCAATAACGGCATTGCAGGCTCCCTGCATTTCACTTATCCGGGCAAGTTTACTCGGTTCACGACACTCATAACGGCGGATATTCCCATTCGGAACTTCTGTACGCTTCGTGTCGGTTATCGCTATTCCCATTTGGGCTCTTCGCTTAACGCATTGGATACTCGAATCCACAGTCATACGGCTTTTATCGGTTTCGTCACGGAGTTTTACCGATTCCGTGGGCGCAAAGCCATGAATACCGGTCGGAGAACCAGTCTTTACTATCATGAT","10.50","13.35","35231","MKTNRRYAFVLPLLLLTGLLAWGQDSSHGSNTAFATDSSSRELPTEQSAYRIHSAYMVGGGGSITRDTYLSPLRYGGWTLNLLGEKTFPLKASDSRWMIRTGHELDFALMDNPANNAHFYSLLYNGSAAALYRLGAKHLRAAWMDNLRLAFGPGLEIGLGGIYSTRNGNNPATLKLYTNAIAQASIGYYVPSETFPLYFRLLSQINLFGIAYGNGFGESYYENFLLNNGIAGSLHFTYPGKFTRFTTLITADIPIRNFCTLRVGYRYSHLGSSLNALDTRIHSHTAFIGFVTEFYRFRGRKAMNTGRRTSLYYHD","1701524 1700580","TIGR ID: PG1621","conserved hypothetical protein","Outer membrane, Extracellular","This sequence corresponds to gi:34397587 in Genbank.Its nearest neighbor in the NR database is gi:29348987 from Bacteroides thetaiotaomicron VPI-5482.","
InterPro
IPR002150
Family
Ribosomal protein L31
PS01143\"[278-300]?RIBOSOMAL_L31
noIPR
unintegrated
unintegrated
SSF56925\"[260-294]TSSF56925


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Mar 8 14:08:08 2005","Tue Mar 8 14:08:08 2005","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 8 14:08:08 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541271","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Tue Mar 8 14:08:08 2005","","1","","","PG1621" "PG1419","1704207","1701514","2694","ATGACAGATTCTTTCGACAACGAACAACCGGATATAGAGTCATCTGTGTCCGATCTGCTTCCCGAAGCCGGTAATCGCCTGCCGGTTGATCATCCTGCCATGGCTACACACCATCTCGGGGGCATGTATCGAAACTGGTATCTCGATTATGCTTCTTACGTAATTCTGGAGCGTGCCGTGCCCCATATAGAAGATGGACTCAAGCCCGTACAACGCCGCATCCTCTACACCATGCACCATTGGTTCGACAATGGTCGTATGAACAAGGTAGCGAAGGTGACGGGACAGACTATGGCTCTACACCCGCACGGCGATGCTTCTATCAACGATGCTCTCGTACAGTTGGGGCAAAAAGGCTATCTGATCGAAACGCAGGGGAATTGGGGTAATATCCTCACGGGGGACGAAGCGGCAGCCGGTCGTTACATCGAGGCCAAACTCTCAGCTTTGGCTCAGGAGACTCTTTTCAATGATAAGATTACGCACTGGAAACGTTCTTACGATGGCAGCGAGGACGAGCCGGTGGCGTTGCCCGTAAAGTTTCCACTTCTCTTGGCACAAGGCACGGAAGGAATTGCTGTAGGTTTGAATTCCAAGGTCTTGCCGCACAATCTCGGTGAACTGCTCATGGCATGTATCGCACATCTGAGAGGAGAGTCTTTCGATCTTTATCCCGATTTCCCTACCGGTGGTATGATGGATGCCAGCCGGTACAATGACGGCCGGCGCGGAGGACAGATCAAGAGCAGGGCTAAGATTCGCAAACTGGACAATCGTACTCTCAGCATTACCGAACTGCCCTGTGGCAAGACGACGTCTTCCCTGATCGAATCCATTCTGAAAGCCAATGAAAAGGGCAAGATCAAGATCAAACGAATAGATGATATGACGGCTGCCGAAGCCGATATACGTATTCATCTGGCTGCGGGTGTATCTTCGGACAAAACCATCGATGCACTCTATGCCTTTACAGACTGTGAAGTAAGTCAGTCGCCTAATGCTTGCGTCATCATGGACGACAAGCCGGTATTCTTGGGAGTGACTGATTTGCTGCGTTATAGTGCGGAGCGAACACGGGAGCTGCTGAAGCAAGAACTGACGATCCGTTTGGAAGAGAAGCGGGAACAGTATTTGGCAGCATCGCTCGAGCGGATTTTCATAGAAGAGCGTATCTATAAAGATCGTGAGTTCGAAGAGGCCGAGAGCGAACAGGATGCTCTCATGCATGTAGAGGCGAGGCTGGAACCTTATGCCCATCGTTTTATTCGCCCCATTACCTACGACGATCTGAAGAAGTTGTTGGAAATACGCATGGCACGGATCCTCCGCTTCAATTTGCCCAAGCACGAGGCCATGATGCTTCAGCTCGAAAAGGATATTGCCGAACTGGAAAAGAATATCCGTGAGATTACTGCTTACACCATCCGTTGGTTCGAGTATCTGCACGAGCACTATGCTTCCCGTTTCCCGCGAAGGACACAACTTATCGGTTTCAGCACCATTCAGGCCACGAAGGTGGCAGAAGCCAATGCAAAACTCTATATCAACCGCGAAGAAGGGTTCATCGGTATGGGACTCAAGGGCGATGAATTCGTATGCAACTGCTCCGACCTCGACGATGTCATCATCTTTTTCCGCGATGGTACGTACCTCATTACGAAGGTTGAGGAAAAGAAATTTATCGGCAACCGTGAGGTGATCTATATCGACCGATTCGAACGAAACGACAAGCGCACCATCTACAACGTCATTTATCGCGACGGCAAGTCCGCTCCGTTCTATATCAAACGTTTCAGCGTCACCGGTGTTACGCGAGACAAGGAGTACAACCTTACGCAGGAAACGGCCGGTAGTCGGGTGATGTATTTCACCGCCAATAAAAATGGCGAGGCAGAGACCGTGAGGATCATCCTCAAACCGAAAGCTCGCCAGCGGGTACTTTCTTTCGAGAAAGACTTTAGCAATGTCGCCATCAAGGGGCGAAGCAGCAAGGGCAATCTGCTGACCAAAGCAGAGGTGCACAAGATCCTGTTCAAACAGCAGGGTGCTTCCACCCTCGGAGGGCGGAAGGTTTGGTTCGATCGGGACGTGATGCGACTGAACTACGACGAGCAGGGCGAATATCTTGGCGAATTCCAAGCTAACGATTCGATGCTGGTAATCTTGGATAACGGGGACTGCTATACTACATCCATAGCGGAAAATAACCACTTCGACCCCAACATGATCAGAATAGAGAAGTATCGTCCCGAAAAAATTTGGACAGCCATCTATCACAACAGAGAAGCCGGCTTCCCTTATCTGAAGCGTTTCAAGATAGAAAACGGCAGTCGGGATAATATGCTGGGAGGAGAAGCTGAGGGCAATAGTCTGCTTTTACTCTCGGATACGCGCTACCCACGTTTTGCTCTTACTTTCGCTGGAATAGATGCCACTCGTCCGGAACTGATCGTAGAGGGAGAAGACTTTGTCGCTGTCAAAGGCATACATGCCAAAGGCAAGCGACTGACTACCTATAAGCTCGATGGAGCGAAAGAATTGTCTCCCGTTCGTGATGAAGAACCGGACGAGGAAACAACCGATCCGGACGAGAGCTTCGCCGAGGTTGCACCCGAAGCCATTGCTTCCGATGAAGATATAAGAGACGAACTCTTGGGTATCCAGCGATTGCAATTCGACGACGATGAAAACGAA","5.50","-20.13","102502","MTDSFDNEQPDIESSVSDLLPEAGNRLPVDHPAMATHHLGGMYRNWYLDYASYVILERAVPHIEDGLKPVQRRILYTMHHWFDNGRMNKVAKVTGQTMALHPHGDASINDALVQLGQKGYLIETQGNWGNILTGDEAAAGRYIEAKLSALAQETLFNDKITHWKRSYDGSEDEPVALPVKFPLLLAQGTEGIAVGLNSKVLPHNLGELLMACIAHLRGESFDLYPDFPTGGMMDASRYNDGRRGGQIKSRAKIRKLDNRTLSITELPCGKTTSSLIESILKANEKGKIKIKRIDDMTAAEADIRIHLAAGVSSDKTIDALYAFTDCEVSQSPNACVIMDDKPVFLGVTDLLRYSAERTRELLKQELTIRLEEKREQYLAASLERIFIEERIYKDREFEEAESEQDALMHVEARLEPYAHRFIRPITYDDLKKLLEIRMARILRFNLPKHEAMMLQLEKDIAELEKNIREITAYTIRWFEYLHEHYASRFPRRTQLIGFSTIQATKVAEANAKLYINREEGFIGMGLKGDEFVCNCSDLDDVIIFFRDGTYLITKVEEKKFIGNREVIYIDRFERNDKRTIYNVIYRDGKSAPFYIKRFSVTGVTRDKEYNLTQETAGSRVMYFTANKNGEAETVRIILKPKARQRVLSFEKDFSNVAIKGRSSKGNLLTKAEVHKILFKQQGASTLGGRKVWFDRDVMRLNYDEQGEYLGEFQANDSMLVILDNGDCYTTSIAENNHFDPNMIRIEKYRPEKIWTAIYHNREAGFPYLKRFKIENGSRDNMLGGEAEGNSLLLLSDTRYPRFALTFAGIDATRPELIVEGEDFVAVKGIHAKGKRLTTYKLDGAKELSPVRDEEPDEETTDPDESFAEVAPEAIASDEDIRDELLGIQRLQFDDDENE","1704207 1701514","PG0339 and PG1483 are both subunit B of DNA gyrase, while PG1217 is another copy of subunit A.TIGR ID: PG1622","DNA gyrase subunit A (topoisomerase)","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 47-679 are 36% similar to gb|AAC66419.1| DNA topoisomerase IV of Borrelia burgdorferi, residues 42-504 are 41% similar to gb|AAF37925.1| DNA gyrase, subunit A of Chlamydophila pneumoniae AR39, residues 39-521 are 39% similar to gb|AAC68255.1| DNA gyrase subunit A of Chlamydia trachomatis.This sequence is similar to BT3579.","
InterPro
IPR002205
Domain
DNA topoisomerase, type IIA, subunit A or C-terminal
PD000742\"[73-142]TDNA_topoisoIV
PF00521\"[58-486]TDNA_topoisoIV
SM00434\"[37-474]TTOP4c
InterPro
IPR013758
Domain
DNA topoisomerase, type IIA, subunit A or C-terminal, alpha-beta
G3DSA:3.90.199.10\"[56-298]TTopo_IIA_A/C_ab
InterPro
IPR013760
Domain
DNA topoisomerase, type IIA, central
SSF56719\"[34-499]TTopo_IIA_cen
noIPR
unintegrated
unintegrated
PTHR10169\"[52-306]TPTHR10169
PTHR10169:SF2\"[52-306]TPTHR10169:SF2


","BeTs to 14 clades of COG0188COG name: DNA gyrase (topoisomerase II) A subunitFunctional Class: LThe phylogenetic pattern of COG0188 is a---yqvCEBrHujGPOlINXNumber of proteins in this genome belonging to this COG is 2","***** PF00521 (DNA gyrase/topoisomerase IV, subunit A) with a combined E-value of 4.2e-39. PF00521A 47-78 PF00521C 142-181 PF00521D 182-207 PF00521E 222-233 PF00521F 261-291 PF00521G 294-343","Residues 47-369 are 46% similar to a (TOPOISOMERASE DNA ISOMERASE DNA-BINDING SUBUNIT A GYRASE) protein domain (PD000742) which is seen in PARC_BORBU.Residues 505-679 are 28% similar to a (TOPOISOMERASE IV SUBUNIT A) protein domain (PD102937) which is seen in PARC_BORBU.Residues 362-500 are 28% similar to a (SUBUNIT A DNA GYRASE TOPOISOMERASE IV ISOMERASE) protein domain (PD155562) which is seen in Q9Z7I9_BBBBB.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Tue Mar 26 15:36:46 2002","Wed Mar 22 10:53:53 MST 2000","Mon Dec 22 11:28:15 2003","Tue Mar 26 15:36:46 2002","Thu Mar 15 14:46:43 MST 2001","Thu Mar 15 14:46:43 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 47-376 are 32% similar to PG1217, DNA gyrase subunit A (topoisomerase).","Thu Mar 15 14:46:43 MST 2001","Thu Mar 15 14:46:43 MST 2001","-51% similar to PDB:1AB4 59KDA FRAGMENT OF GYRASE A FROM E. COLI (E_value = 5.6E_39);-49% similar to PDB:2NOV Breakage-reunion domain of S.pneumoniae topo IV: crystal structure of a gram-positive quinolone target (E_value = 4.7E_38);-48% similar to PDB:1ZVU Structure of the full-length E. coli ParC subunit (E_value = 1.3E_32);-49% similar to PDB:1BGW TOPOISOMERASE RESIDUES 410-1202, (E_value = 2.0E_12);-49% similar to PDB:1BJT TOPOISOMERASE II RESIDUES 409-1201 (E_value = 2.0E_12);","","","Residues 58 to 486 (E-value = 2e-38) place PG1419 in the DNA_topoisoIV family which is described as DNA gyrase/topoisomerase IV, subunit A (PF00521)","Tue Mar 27 15:43:43 MST 2001","34541272","","","","","","1","","","PG1622" "PG1420","1705458","1704271","1188","ATGTTGTCTTCCCGTACATTTCGTTATCTGCTCAATCTGATTCTGCTCCTTGGTGGTATCATATTGGTGACGGGATTTGCCCGTGCCAATAAGGCCGGATCCGAATCAAAGCAAATCGCCGCCGATACGGCCTCGCAGGCTTTCTCCAATGAGATCACTCGTTTCTACCCGATGGCAGCCGGTATCGTCCAAGAGGATAGTACTCGTACCATTGTTATGGATGCCAAGGCGCGTCAATTGGGTTACTTGCTCTACACATCGCCCTATACAGACGACGTGGAAGGGTACAACGGGCCTACTCCCGTAGTCATCGCCTTTGGTCCGGATGACCGCATCCTCGGTACGATGCTGCTGGAGCATGACGAGACACCGAGCTTTGCCCGTAGAGTGGAGAAGGCGGGGTTATATGAAAGCTGGAATGGCAAGACCGCCGAGGAGGCATTGGCCGAAGAGGTCGATGCCGTATCGGGAGCCACCTATACGTCCGAAGCCGTTATCACTTGTGTGCAGAAACGCTTGGAGATATATATCGGTCAAAAAAAAAACAAAAAAGCTGACGTTTGGGGGATCGTCCGCACAGGGGGAACCATCGCCGTCATTCTGATAGCTTTGGTTTGCTTTTTTTCCCCGTCAAAGGCCAAACCTTTTCGCCTCTATCTCCTTGCGCTTAGTATTGTATTCCTCGGTTTTCTTAAAGGGACGTTCCTCTCTTTGGAGGGTACTTACCATTGGCTGAGCACCGGATTTCCCTTTGCAACACAGTGGTTGCTCATCGGGCTGTTTGCTTTGGCCGTATTGTTGCCTCTGATCACGAACAAACCGTTTTATTGCCGCTGGGTATGCCCTTTCGGAGCAGCTCAGGAATTGATGGGAAAGCTATCTCGACGGAAAGTGCATATACCGCCACAGTGGATAAAGGTACTCACCTCGGTAAGACGCTATTTGCTCCTGCTCGTCGTCGTGTTGTTGATCTTCAACGTTGCCGGTGATCTCTCCAAGTGGGAGCCTTTTGCCGCTTTTTCTTTTCGTTCGGCATCGGTATGGGTGCTTGTCTTGGCGGGGCTGATACTCTTGGCTTCTATCTTCGTTCAGCAGCCGTGGTGCCGTTTCTTTTGCCCAACGGGACAACTGCTCGAAAGCGTCAGAAAATGCTCGCCTCGCAATTTGCGACACAGCCATCCAAAGAAC","10.10","13.88","44076","MLSSRTFRYLLNLILLLGGIILVTGFARANKAGSESKQIAADTASQAFSNEITRFYPMAAGIVQEDSTRTIVMDAKARQLGYLLYTSPYTDDVEGYNGPTPVVIAFGPDDRILGTMLLEHDETPSFARRVEKAGLYESWNGKTAEEALAEEVDAVSGATYTSEAVITCVQKRLEIYIGQKKNKKADVWGIVRTGGTIAVILIALVCFFSPSKAKPFRLYLLALSIVFLGFLKGTFLSLEGTYHWLSTGFPFATQWLLIGLFALAVLLPLITNKPFYCRWVCPFGAAQELMGKLSRRKVHIPPQWIKVLTSVRRYLLLLVVVLLIFNVAGDLSKWEPFAAFSFRSASVWVLVLAGLILLASIFVQQPWCRFFCPTGQLLESVRKCSPRNLRHSHPKN","1705458 1704271","TIGR ID: PG1623","probable membrane-bound regulatory protein NosR","Inner membrane, Cytoplasm","One significant hit and numerous weak hits in gapped BLAST; e.g.residues 72-379 have 27% similarity to AF115542, D. dehalogenans putative membrane bound regulatory protein, resdiues 216-378 have 28% similarity to AF047429, A. cycloclastes regulatory protein NosR, residues 192-278 have 27% similarity to AJ010260, P. denitrificans NosR protein.","
InterPro
IPR006034
Family
Asparaginase/glutaminase
PS00144\"[190-198]TASN_GLN_ASE_1
InterPro
IPR007329
Domain
FMN-binding
PF04205\"[95-176]TFMN_bind


","BeTs to 3 clades of COG0348COG name: PolyferredoxinFunctional Class: CThe phylogenetic pattern of COG0348 is aM----vcE--huj-------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 273-386 are 24% similar to a (PROTEIN IRON-SULFUR ELECTRON TRANSPORT 4FE-4S) protein domain (PD006495) which is seen in YCCM_ECOLI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu May 31 18:02:17 MDT 2001","Tue Mar 20 13:22:34 MST 2001","Fri Feb 23 14:39:01 MST 2001","","Fri Feb 23 14:39:01 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 20 13:22:34 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 89 to 176 (E-value = 1.2e-12) place PG1420 in the FMN_bind family which is described as FMN-binding domain (PF04205)","Mon May 14 17:31:00 MDT 2001","34541273","","","","","","1","","","PG1623" "PG1421","1705651","1706079","429","ATGCCATCCGGTGAGGGTTCCTTGGCGGTGATGATTGGCTATCTGCTCAGCTCCCGTACGGGATGCAATCTCTTCAATTGGGTACAACGACACGTGCTCCGCTGTGAGCAGATTCGCTCTTTCATGCCTGTCGTTCGCAATGTGGCTGTCACCACCTTTATGGAGCAAATACCGTTTTATGGACGTGCTATCTCCTCTTGCTGTTTGTCTATGACAATGCTTTATTGGGGGGATAGGCACCCTGTGGCCTACGTCGTTGCTTTCGGTCCTTTGTTCTGTACCCTTTATCTTTTTGCTCGTCTGATCCGTTATAAGCGCACAGGGTCAGCTATTCGATATGCAGTCCCGACGGTGATCATTTTCTGGAACTTTGTAGAGATACTTCGTCGCGCATCCTTTATCCTTTTGCCTGTTTCGAGGCTCTCGGGC","10.90","10.22","16342","MPSGEGSLAVMIGYLLSSRTGCNLFNWVQRHVLRCEQIRSFMPVVRNVAVTTFMEQIPFYGRAISSCCLSMTMLYWGDRHPVAYVVAFGPLFCTLYLFARLIRYKRTGSAIRYAVPTVIIFWNFVEILRRASFILLPVSRLSG","1705651 1706079","NO TIGR ID corresponds to this gene.","hypothetical protein","Inner membrane, Outer membrane, Cytoplasm","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
tmhmm\"[81-99]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG1422","1707366","1706284","1083","ATGGCATACCAATCCAAGAATACCGATGAGCATGTAACATTTGCAGACGCACTCCTTTCAAAGCGTTATCGCAAAGCACAAAACGACTTCCTCAATCAGGTTGACAGGCTTATCGATTGGCGTCCGATCAGGACGCTGATCAACAAGAAATACACCAAGCGACAAAATGCCATCGGCGCCCCGGCTTATGACGTGATTCTCTTATTCAAGATGTTGCTTTTGGAGACATGGTACAACCTCAGTGATTGTGCTTTGGAGGAGCGCATCAATGATTCAATCACCTTTTCCCGATTCTTGGGGCTGAAGATGGAAGAGGTTTCTCCCGACCACAGTACCATCAGTCGATTTCGTTCGGCACTGACAGAGTTGGGTCTCATGGACAAACTATTGGCGCAGTTTAACAAACAACTTTCCCGCCATCACATTTCGGTCAGGGAAGGGGTGCTTGTCGATGCAAGCCTTGTGGAGACGCCGCATAAACCCAACGGAAGCATTACGATTGAAGTCGCAGACGACAGAGAAGACAATCGGAGCGAGGAGGAAAAAGAGGCAGAGGAGGATTATCAAAAACAGGTTGTCCGTCAGCGTAAAGGGACGGATGAAGAAGCCCGTTGGGTTTACAAACAAAAGCGTTATCACTACGGATACAAAAAGCATTGTCTGACCAATGTTCAAGGCATTGTTCAAAAGGTGATAACGACTGCAGCGAACCGCAGTGACACGAAGGAGTTTATTGCGCTATTGCAGGGTGCAAACATACCTCAAGGCTCAGCCGTCTTGGCGGACAAAGGATATGCTTGCGGGGAAAATCGTTCCTACCTGCAAACCCATCACCTTCAAGACGGCATCATGCACAAGGCACAACGCAACAGGGCATTGACCGAGGAAGAGAAGCAACGAAACAAAGCAATCAGTCGGATACGGAGCACCATCGAACGCACCTTTGGCAGTATTCGCCGGTGGTTTCATGGCGGACGATGTCGATACCGGGGACTTGCCAAGACCCATACTCAAAACATTCTTGAAAGCATCGCCTTTAATTTATACAGAACCCCGGGGATAATTATGTCCTCATTTGTAGGA","10.20","14.72","41742","MAYQSKNTDEHVTFADALLSKRYRKAQNDFLNQVDRLIDWRPIRTLINKKYTKRQNAIGAPAYDVILLFKMLLLETWYNLSDCALEERINDSITFSRFLGLKMEEVSPDHSTISRFRSALTELGLMDKLLAQFNKQLSRHHISVREGVLVDASLVETPHKPNGSITIEVADDREDNRSEEEKEAEEDYQKQVVRQRKGTDEEARWVYKQKRYHYGYKKHCLTNVQGIVQKVITTAANRSDTKEFIALLQGANIPQGSAVLADKGYACGENRSYLQTHHLQDGIMHKAQRNRALTEEEKQRNKAISRIRSTIERTFGSIRRWFHGGRCRYRGLAKTHTQNILESIAFNLYRTPGIIMSSFVG","1707366 1706284","Member of the IS5 family of elements. A full-length ISPg1 element.TIGR ID: PG1624","ISPg1 transposase (IS1106-like transposase)","Cytoplasm","PG1422 is equivalent to the previously sequenced AJ130872 and AB015879 in GenBANK. Residues 31-350 are 34% similar to the IS1106 transposase of N. meningitidis (AE002488). Residues 1-156 and 282-361 conform to the previously sequenced IS1126 element of gingivalis (AB019363).","
InterPro
IPR002559
Domain
Transposase, IS4-like
PF01609\"[147-348]TTransposase_11


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 157-302 are 87% similar to a (TRANSPOSASE PLASMID PROTEIN ELEMENT) protein domain (PD004652) which is seen in Q9ZA61_PORGI.Residues 12-109 are identical to a (TRANSPOSASE PROTEIN INSERTION ELEMENT) protein domain (PD007264) which is seen in Q9ZAD0_PORGI.Residues 303-361 are identical to a (TRANSPOSASE ORF7 INSERTION SEQUENCE IS1126-LIKE GENE) protein domain (PD187845) which is seen in Q9ZA61_PORGI.Residues 110-156 are identical to a (TRANSPOSASE ORF7 INSERTION SEQUENCE IS1126-LIKE GENE) protein domain (PD187846) which is seen in Q9ZA61_PORGI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Fri Feb 16 11:24:08 MST 2001","Mon Feb 12 11:31:11 MST 2001","Thu Dec 21 15:24:18 MST 2000","Thu Dec 21 15:13:00 MST 2000","","Mon Feb 12 11:31:11 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1422 is virtually identical to PG1267, PG0169, PG1050, PG1062, PG0740, PG0918, PG1662, PG0420, PG0499, and PG1099. Similarities exist to PG0732, PG0842, PG1607, PG0731, PG0884, PG1184, PG1087, PG0763, PG1755, PG0686, PG0756, PG1798, PG1230, PG1919, PG0044, PG0689, PG1215, PG1665, PG0839, PG1895, PG0883, PG1231, PG0730, PG1159 and PG1608.","Mon Jun 4 16:14:20 MDT 2001","Mon Jun 4 16:13:29 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 147 to 348 (E-value = 2.2e-40) place PG1422 in the Transposase_11 family which is described as Transposase DDE domain (PF01609)","Mon Jun 4 16:13:29 MDT 2001","34541274","","Hanley,S.A., Aduse-Opoku,J. and Curtis,M.A.A 55-kilodalton immunodominant antigen of Porphyromonas gingivalisW50 has arisen via horizontal gene transferInfect. Immun. 67 (3), 1157-1171 (1999)Maley,J. and Roberts,I.S.Characterisation of IS1126 from Porphyromonas gingivalis W83: a new member of the IS4 family of insertion sequence elementsMicrobiol. Lett. 123 (1-2), 219-224 (1994)Shibata,Y., Hayakawa,M., Takiguchi,H., Shiroza,T. and Abiko,Y.Determination and characterization of the hemagglutinin-associatedshort motifs found in Porphyromonas gingivalis multiple geneproducts. J. Biol. Chem. 274 (8), 5012-5020 (1999)","Knight,A.I., Ni,H., Cartwright,K.A. and McFadden,J.J.Identification and characterization of a novel insertion sequence,IS1106, downstream of the porA gene in B15 Neisseria meningitidis.Mol. Microbiol. 6 (11), 1565-1573 (1992)","Mon Feb 12 11:31:11 MST 2001","Mon Feb 12 11:31:11 MST 2001","1","","","PG1624" "PG1423","1707579","1708778","1200","ATGGTTATGAAGCTGATTAAAAGAAGTTTGCTCCTGCTTGGAGCGGTACTGCTGATTACGCTTCCTGCGTACTCGCAGAATGATGACATCTTCGAAGATGACATCTATACATCGCGAAAAGAAATACGTAAACAAAACCAAGTTAAAGACTGGCAAAACCAAGAGGACGGATACGGCGACGATACGGAATATACAGTGGCTTCCGATCGGGACATTGACGCCTACAATCGTAGAGATGGCCAGTCCTACGATGGGAAAAAGTTGTCCAAAGACAAGAAAAGAGACTCCACTCGTTCTTCTGTTCCCGGTCGCTATAGTCGCCGCTTGGCTCGATTCTATAAGCCGAATACGATCGTCATTTCAGGTGCCGACAATGTATATGTAACTGATGATGGTGAGTATTTCGTCTATGGAGACGAATACTATGATGACGCGTCGTCTGTAAACATTTACATCAACAGTCCTTGGTGCGATCCGTTCCCTTATACGTCATGGTATCCATCTTTCTCCGGCTGGTACAACTATACGTGGAACTATCCATGGTTCTACTACGGTAGCCATATCGGATGGGGCGGTTATTACCCCGGATATAATTGGTATTGGAGCTACTACTATGATCCTTTCTACAATCCCTATGGAATCGGTATGGGTTGGGGATATCCTTATGGCTGGGGCAGCTATTACGGTTGGGGTGGCTATCCGGGAGTGATACATCACTACCACCACTACCCCAAGAAGACCTATTCCAATGGTCAGCATTCCGGAGCTTACTATTCTTATGGCCGACCGAATCGTATCAAAGGTGGAACGTCCGGTGCCAAACTTGGGACAGGACGCTACGATAGAATTCAAAATTCGTCTTCGCAAAAAAATAAGTTCGGATTGCAGTCGAACAAACCCAATAATAATCTGCAAAATGTCAAGTCGGGACGTACCGGCCGAGCCAATAGAGACCGAAATATAGAAACGGTAACTCCAAACAACGGGCAAAAGCAGAATCGTCCCGTATTCCAGCAGAATCAGTCCGGCAATGACCGACCGACCGGACGGAATATCCGCAGCGAGAGACAGGGGGAAAATAACGATAGGACATTTTCGACTCCTTCTCGTAGCAATAGTAACGGTGGCTTCTCCACGCCTTCTCGCTCTTCTTCCGGCTCTATGAGCGGAGGTGGCGGACGTAGTGGCCGGGGACGCAAT","10.30","16.40","45890","MVMKLIKRSLLLLGAVLLITLPAYSQNDDIFEDDIYTSRKEIRKQNQVKDWQNQEDGYGDDTEYTVASDRDIDAYNRRDGQSYDGKKLSKDKKRDSTRSSVPGRYSRRLARFYKPNTIVISGADNVYVTDDGEYFVYGDEYYDDASSVNIYINSPWCDPFPYTSWYPSFSGWYNYTWNYPWFYYGSHIGWGGYYPGYNWYWSYYYDPFYNPYGIGMGWGYPYGWGSYYGWGGYPGVIHHYHHYPKKTYSNGQHSGAYYSYGRPNRIKGGTSGAKLGTGRYDRIQNSSSQKNKFGLQSNKPNNNLQNVKSGRTGRANRDRNIETVTPNNGQKQNRPVFQQNQSGNDRPTGRNIRSERQGENNDRTFSTPSRSNSNGGFSTPSRSSSGSMSGGGGRSGRGRN","1707579 1708778","TIGR ID: PG1625","hypothetical protein","Outer membrane, Cytoplasm, Extracellular","No significant hit found in gapped BLAST with E value less than e-04.","
noIPR
unintegrated
unintegrated
signalp\"[1-25]?signal-peptide
tmhmm\"[181-201]?\"[220-240]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541275","","","","","","1","","","PG1625" "PG1424","1708885","1710546","1662","ATGAGGATCAAGCCCTCTCTGAAAACGATGAAAAAGATATCAGCATATGTTATTGGTGCGGCACTTTCGGTTGCTTCCGGCGTGCCGTCAGTTTATGCTCAAGGCGAAGCCGATGCTATTCGTTACAGTCGCACAGAGCTTGGAGGTTCGGCTCGTTTCCGTTCCATGGCAGGTGCTTTCGGTGCTTTGGGCGGTGACTTTTCTGCTATAGGACAGAATCCGGCCGGCCTGGGCATTTTTCGCTCTTCGGAAGTCTCGGCTACCATTGATTTCTCTTCCATATCCAATCAGGCAGCTTGGCAGGGATCAAGTGAGACCTTCAATAAAAACAAATTGCTTTTCACGGGTATCGGTTATGTCGGATCATGGGGCAAAGCCAATGAAGATGTAAGCGTCAATTTCGGGCTGGGGGCGAAGCGAGTGCTGGACTACGAGCGATCGTTTCGGATAGCCGGAGGTGAGCAGAAGTTTTCCGTGGCGGACTATGTGGCAGCTCAGACTCCCGGCAAAGCCAATCCGTCTCATTTCAATTATAATGGATTGGAGAGCAGTTGGCTTACGGACTTAGGGTATAATGCCGGTTGGATAGCTCAGCTTCCCGGCGGGTATGGTTTTGAGTCCATATTCAAGTATAAACAGAATGGTGAGTACCAGATCTTCGGGCCTTCCTCCACGGCTTTCGACCTGAAAGAGACGGGGCACGTATGGAACTATGACTTTGGCTTGGGCATTAACATCCAAGACACATGGTATTTGGGTGCGAGCATGACTTATAGCGATCTGCAATTTGACACGAACACTTTCTATCAGGAGAATTTTTCTTTCAACAATGGTGCTATCAATGACTACCTGAAACTCGAAAATACTCTCTCTACATCAGGAAGCGGACTGAATATCGGTATCGGAGCCATCTATCGTCCGGCTGATGCTGTTCGGATAGGTTTGTCCTACTATACGCCTACATGGTACTGGATGAAGAGTTACTATAGGGCTTATGGCTCTTCTTATTATTCCCAAGGGGTAGACTCCAATGGTCAGCCGCTTCCGGAGAATCTCTACTTCATGAGTAGCCAGACTCCCGAATCGTATAATACTTATCAAATGAGTAGTCCGGGACGATTTGTGGCTAGTTTGGCAGTCGTTGCTGGCAAAATCGGCCTTCTCAGTATGGATTATGAATTGGAATCTTACGGCCAGATCAAATTAAAGGATGAGAACGGTACGGCCTACGTTGATAATAAGTTCATTTCAGAGGATTTTGGTTCACGCCACACCATCCGTTTGGGAGGAGAACTGCGTCCCATATCGCGTCTGAGTCTGCGTGCCGGGTATTCACACACTTCCAATCCCATTAAAAATGAAAAATTGAAAGCTTTCGACGGCTCGGCACAGGTGACCGTCTTCCCTATGGGGGCTATGCCTCATTACGAACTTCCGGGCAATTCCTATACCGTGACAGGAGGCTTGGGTTACCGTTTCACGCGTAATCTTTCGGGCGATTTGGCTGTGATCTATCGTAATGAGAAGAGTTACTACTATACTTTTGGCCGAATGGTATCGGACGACCCGAATCCGGCCAATGTGTTGGAAGTGGAATCTCCTGCACCGGCAAAACTCACTCGCTCTAACTTCAGATTAGCAATGACAATGTCGTATCGCTTC","8.70","2.23","60935","MRIKPSLKTMKKISAYVIGAALSVASGVPSVYAQGEADAIRYSRTELGGSARFRSMAGAFGALGGDFSAIGQNPAGLGIFRSSEVSATIDFSSISNQAAWQGSSETFNKNKLLFTGIGYVGSWGKANEDVSVNFGLGAKRVLDYERSFRIAGGEQKFSVADYVAAQTPGKANPSHFNYNGLESSWLTDLGYNAGWIAQLPGGYGFESIFKYKQNGEYQIFGPSSTAFDLKETGHVWNYDFGLGINIQDTWYLGASMTYSDLQFDTNTFYQENFSFNNGAINDYLKLENTLSTSGSGLNIGIGAIYRPADAVRIGLSYYTPTWYWMKSYYRAYGSSYYSQGVDSNGQPLPENLYFMSSQTPESYNTYQMSSPGRFVASLAVVAGKIGLLSMDYELESYGQIKLKDENGTAYVDNKFISEDFGSRHTIRLGGELRPISRLSLRAGYSHTSNPIKNEKLKAFDGSAQVTVFPMGAMPHYELPGNSYTVTGGLGYRFTRNLSGDLAVIYRNEKSYYYTFGRMVSDDPNPANVLEVESPAPAKLTRSNFRLAMTMSYRF","1708885 1710546","Veith et al. (2002) identified this protein by two-dimensional gel electrophoresis and peptide mass fingerprinting of outer membranes prepared from strain W50. Based on signal peptide sequence comparisons to PG0626, PG0627, PG1592, PG1840, PG0836, PG0023, PG1893, the mature N-terminus of this protein is predicted to be pyroglutamate.TIGR ID: PG1626","possible outer membrane-associated protein P58","Outer membrane, Extracellular","No significant hit found in gapped BLAST with E value less than e-04.","
noIPR
unintegrated
unintegrated
SSF56935\"[42-554]TSSF56935


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Thu Feb 7 17:46:25 2002","Mon Feb 11 12:28:07 2002","","Thu Feb 7 17:46:25 2002","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 7 17:46:25 2002","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Feb 7 17:46:25 2002","34541276","","Veith,P., Talbo,G., Slakeski,N., Dashper,S., Moore,C.,Paolini,R., Reynolds,E., Major outer membrane proteins and proteolytic processing of RgpA, and Kgp of Porphyromonas gingivalis W50, Biochem J. 2002 (in press).","","Thu Feb 7 17:46:25 2002","","1","","","PG1626" "PG1425","1711915","1712202","288","ATGGCCGTTGCCGGTTTCAGCCCCATCAAGCTGATTTGGAAGAACAGCCGTCATGATTTGGTTTTAGCCGGTCAGGCAGGTCTTTCTTATAAAAACAATAATTATTTATATATGGATGTAGACAATAAGCATGCTATGGCACGCACGTATGCCAATGGCAAATTTAGCCTTGGTGCTCGCATGGCCTACGAATATCGCATCTCCAATACCCTTGGGGCAGGAGCTACTGCGACATATGAATTCGGGGGCGAAGTTTTTGCAGCCTTGGCTACATTCAATGTTCATTTC","10.20","3.70","10546","MAVAGFSPIKLIWKNSRHDLVLAGQAGLSYKNNNYLYMDVDNKHAMARTYANGKFSLGARMAYEYRISNTLGAGATATYEFGGEVFAALATFNVHF","1711915 1712202","TIGR ID: PG1630","hypothetical protein (possible immunoreactive 23kD antigen PG66 homolog)","Extracellular","Residues 1-96 have 45% similarity to AF175721(PG0213), P. gingivalis immunoreactive 23kD antigen PG66.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Jun 5 16:11:51 MDT 2001","Fri Feb 23 14:47:23 MST 2001","Fri Feb 23 14:47:23 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1-96 have 45% similarity to PG0213, an immunoreactive 23kD antigen PG66.","Tue Jun 5 16:11:51 MDT 2001","Mon May 14 17:34:30 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon May 14 17:34:30 MDT 2001","34541277","","","","","","1","","","PG1630" "PG1426","1712411","1713475","1065","ATGAATCAGATCAGCCTTCCGCAACGATCCTCCTTTGCCTCCTGCCTGAATGGTAAGGATGTGGATCTCTACCATTTGACCAATGGAAAAGGAATAGACGCTTATATTACCAACTACGGTGCTCGAATCGTTGCCCTCATCGTGCCGGACAAAGATGGCAATCGGACGGACGTCGTCCTGGGGCACGACTCCCTACAGGAATACATCGACTCGGAGGAGCAGTATTTCGGTGCCGTCTGCGGCAGGTATGCCAACAGGATTGCCCGCGGTTCTTTCTCCATAGACGGCAGATGCTACAGCCTGCCGATCAACAATGGGCCGAACTCTCTGCATGGCGGCATCAGCGGATTTAATACGAAGGTCTGGGAGGTGAAATCCGCCGGCCCCTCTTCGCTTGTGCTGGAATACGTGTCGGCAGATGGAGAGGAGGGGTATCCGGGCGAGCTGGTCGTTCGGATCATTTACAGCGTCACGGATGAGGGCGCATTGCACATAGACTATCGTGCTACTGCGGATGCTCCTACGGTTCTGAATCTGACCAATCACTCCTATTTCAATCTCTCGGGTGCAGGCGATCCCTCCGTGCATGATCATACCCTCATGATACAAGCCCGGCATTATCTCCCCACAGACGATACGGCCATCCCTTACGGCGAGCCTGCCGAGGTCGAGGGGACGCCGTTCGATTTCCTCACGCCTCACGGCATAGGGGATCGGATCGACAGTGCGATGGATCAGCTCATTTGGGCAAAGGGATACGATCATACCTTTATCGTGGACAAGCCGTCGGGGGCATATGGCTTTTGCGGCCGTTGCGTATCGCCCAAGACCGGAATCGTATTGGATGTCTATTCCACCGAACCGGGTATGCAGGTGTACACGGGCAACTGGATGAGCGGAAAGCTGAGGGGGAAGTCCGATCGGCGTTATCCGGCTCGCTCGGCCGTTTGTTTCGAGACGCAGCACTATCCCGATTCGCCGAACAAACCGAATTATCCTACGACCCTCTTGCGCCCGGGCGAAGTGTTCGAGTCCCGGACGGCGTTCCGATTCGGTATCGTCGAG","5.30","-10.62","38960","MNQISLPQRSSFASCLNGKDVDLYHLTNGKGIDAYITNYGARIVALIVPDKDGNRTDVVLGHDSLQEYIDSEEQYFGAVCGRYANRIARGSFSIDGRCYSLPINNGPNSLHGGISGFNTKVWEVKSAGPSSLVLEYVSADGEEGYPGELVVRIIYSVTDEGALHIDYRATADAPTVLNLTNHSYFNLSGAGDPSVHDHTLMIQARHYLPTDDTAIPYGEPAEVEGTPFDFLTPHGIGDRIDSAMDQLIWAKGYDHTFIVDKPSGAYGFCGRCVSPKTGIVLDVYSTEPGMQVYTGNWMSGKLRGKSDRRYPARSAVCFETQHYPDSPNKPNYPTTLLRPGEVFESRTAFRFGIVE","1712411 1713475","TIGR ID: PG1632","aldose 1-epimerase","Periplasm, Cytoplasm, Extracellular","Residues 8-353 have 45% similarity to AE001710, T. maritima aldose 1-epimerase.Residues 11-353 have 42% similarity to X03893, A. calcoaceticus aldose 1-epimerase.Residues 36-353 have 46% similarity to AB044390, S. scrofa aldose 1-epimerase.","
InterPro
IPR008183
Family
Aldose 1-epimerase
PF01263\"[22-350]TAldose_epim
PS00545\"[178-187]TALDOSE_1_EPIMERASE
InterPro
IPR011013
Domain
Glycoside hydrolase-type carbohydrate-binding
SSF74650\"[20-355]TGal_mut_like
InterPro
IPR014718
Domain
Glycoside hydrolase-type carbohydrate-binding, subgroup
G3DSA:2.70.98.10\"[10-355]TGlyco_hydro_42_D5
InterPro
IPR015443
Family
Aldose_1_epimerase
PTHR10091\"[70-355]TAld_epimerase


","BeTs to 3 clades of COG2017COG name: Galactose mutarotase and related enzymesFunctional Class: GThe phylogenetic pattern of COG2017 is ----Y-v-Eb-h---------Number of proteins in this genome belonging to this COG is 1","***** IPB001823 (Aldose 1-epimerase) with a combined E-value of 1.4e-30. IPB001823A 77-87 IPB001823B 144-157 IPB001823C 175-187 IPB001823D 315-332","Residues 24-351 are 42% similar to a (ISOMERASE ALDOSE 1-EPIMERASE MUTAROTASE) protein domain (PD006407) which is seen in GALM_ACICA.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Fri Feb 23 14:54:42 MST 2001","Fri Feb 23 14:54:42 MST 2001","Fri Feb 23 14:54:42 MST 2001","Fri Feb 23 14:54:42 MST 2001","Fri Feb 23 14:54:42 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon May 14 17:51:16 MDT 2001","-64% similar to PDB:1SNZ Crystal structure of apo human galactose mutarotase (E_value = 6.7E_77);-64% similar to PDB:1SO0 Crystal structure of human galactose mutarotase complexed with galactose (E_value = 6.7E_77);-51% similar to PDB:1LUR Crystal Structure of the GalM/aldose Epimerase Homologue from C. elegans, Northeast Structural Genomics Target WR66 (E_value = 3.0E_45);-50% similar to PDB:1L7J X-ray structure of galactose mutarotase from Lactococcus lactis (apo) (E_value = 1.6E_41);-50% similar to PDB:1L7K x-ray structure of galactose mutarotase from Lactococcus lactis complexed with galactose (E_value = 1.6E_41);","","","Residues 23 to 350 (E-value = 9.4e-113) place PG1426 in the Aldose_epim family which is described as Aldose 1-epimerase (PF01263)","Mon May 14 17:51:16 MDT 2001","34541278","","","","","","1","","","PG1632" "PG1427","1713528","1714679","1152","ATGGAATTAGACTTCGTAAGGAGTAGATTCATCAAGCACTTTGACGGATCTACGGGTCAGATCTTCACTTCTCCCGGGCGCATCAATCTGATCGGCGAACACACGGACTACAACGGCGGTTTCGTCTTCCCCGGTGCTATAGACAAGGGCGTCATGGCCGAAATAAAACCGAATGGTTCGGACAAGGTAAGGGCATATTCGATCGACCTCAAGGACTATGTGGAGTTCGGGCTCGGGCCGGACGATGCTCCCCGTACCACTTGGGCAAAGTATATCTATGGCGTTTGTCGCGAGATGATAGCCCGAGGCGTAGAGGTAAAGGGATTCAATACGGCCTTCTCCGGGGATATTCCGCTCGGAGCCGGCATGTCCTCTTCGGCAGCCTTGGAAAGCACCTATGCTTTTGCCCTGAACGAACTCTTCGGCAACGGTATGATCGACAAATTCGAATTAGCCAAGGTCGGTCAGGCTACGGAGCATAAGTACGTGGGTGTGAAGTGCGGCATCATGGATCAGTTTGCCAGTCTTTTCGGGAAGAAAGACCATCTCATCCGTTTGGATTGCAAGACGCTCGAACATAAATATTTTCCATTCCATCCCCAAGGGTACAGGCTGGTGCTTTTGGATTCGGTCGTAAAGCATGAACTTGCTTCCTCAGCGTATAATAAACGGAGAGAGTCCTGCGAAAATGTGGTCAAGGAGATTAAGAAAAAACATCCCGAAGTGGAGTTCCTGCGAGATGCTTCGATGAGTATGTTGGAAGAGGTGAAGGGCGAAGTCTCTGCCGAGGATTATATGCGTGCCGAGTATGTCGTCGAAGAAGTGCAGCGAGTGCTCGATGTGTGCGATGCACTGGAGCGCGACGACTACGAAACCGTAGGACAGAAAATATACGAAACGCACGATGGTATGAGTCGTCTCTATGAGGTGAGCTGCGAAGAGCTCGACTTCCTCAACGGCATAGCACGGGATTGTGGCGTGACCGGTTCGCGCGTCATGGGTGGCGGATTTGGCGGTTGTACGATCAACCTCGTCAAGAAAGAACTGTACGATCTCTTTGTCGAGAATGCCAAGAAGAGATTCAAGGAACGATTCGGCCGCGAACCCAAGGTGTACAATGTCGTTATCAGCGATGGCTCTCGCAGGTTAGAC","5.80","-7.17","43162","MELDFVRSRFIKHFDGSTGQIFTSPGRINLIGEHTDYNGGFVFPGAIDKGVMAEIKPNGSDKVRAYSIDLKDYVEFGLGPDDAPRTTWAKYIYGVCREMIARGVEVKGFNTAFSGDIPLGAGMSSSAALESTYAFALNELFGNGMIDKFELAKVGQATEHKYVGVKCGIMDQFASLFGKKDHLIRLDCKTLEHKYFPFHPQGYRLVLLDSVVKHELASSAYNKRRESCENVVKEIKKKHPEVEFLRDASMSMLEEVKGEVSAEDYMRAEYVVEEVQRVLDVCDALERDDYETVGQKIYETHDGMSRLYEVSCEELDFLNGIARDCGVTGSRVMGGGFGGCTINLVKKELYDLFVENAKKRFKERFGREPKVYNVVISDGSRRLD","1713495 1714679","TIGR ID: PG1633","galactokinase (galactose kinase)","Cytoplasm","Residues 24-383 have 41% similarity to AE001776, T. maritima galactokinase.Residues 24-383 have 40% similarity to AF055482, T. neapolitana galactose kinase. Residues 20-383 have 38% similarity to Z99123, B. subtilis galactokinase.This sequence corresponds to BT0370.","
InterPro
IPR000705
Family
Galactokinase
PR00473\"[26-44]T\"[88-99]T\"[108-126]T\"[266-280]TGALCTOKINASE
PIRSF000530\"[2-384]TGalactokinase
TIGR00131\"[3-383]Tgal_kin
PS00106\"[26-37]TGALACTOKINASE
InterPro
IPR006203
Domain
GHMP kinase, ATP-binding region
PS00627\"[117-128]?GHMP_KINASES_ATP
InterPro
IPR006204
Domain
GHMP kinase
PF00288\"[110-179]TGHMP_kinases_N
InterPro
IPR006206
Family
Mevalonate and galactokinase
PR00959\"[24-48]T\"[115-137]T\"[159-178]T\"[329-346]TMEVGALKINASE
InterPro
IPR013750
Domain
GHMP kinase, C-terminal
PF08544\"[281-363]TGHMP_kinases_C
InterPro
IPR014721
Domain
Ribosomal protein S5 domain 2-type fold
G3DSA:3.30.230.10\"[1-207]TRibosomal_S5_D2-type_fold
noIPR
unintegrated
unintegrated
G3DSA:3.30.70.890\"[283-371]TG3DSA:3.30.70.890
PTHR10457\"[75-376]TPTHR10457
PTHR10457:SF6\"[75-376]TPTHR10457:SF6
SSF54211\"[1-201]TSSF54211
SSF55060\"[202-383]TSSF55060


","BeTs to 7 clades of COG0153COG name: GalactokinaseFunctional Class: GThe phylogenetic pattern of COG0153 is ---kY-vcebrh-----l---Number of proteins in this genome belonging to this COG is 1","***** IPB000705 (Galactokinase) with a combined E-value of 1.8e-76. IPB000705A 24-41 IPB000705B 88-96 IPB000705C 108-129 IPB000705D 159-189 IPB000705E 207-235 IPB000705F 266-280 IPB000705G 293-322 IPB000705H 329-340***** IPB001745 (GHMP kinases putative ATP-binding domain) with a combined E-value of 5.6e-15. IPB001745A 25-34 IPB001745B 117-127 IPB001745C 329-340","Residues 267-365 are 41% similar to a (KINASE ATP-BINDING TRANSFERASE) protein domain (PD002375) which is seen in O85253_THENE.Residues 24-187 are 45% similar to a (GALACTOKINASE KINASE GALACTOSE METABOLISM) protein domain (PD003096) which is seen in O85253_THENE.Residues 190-238 are 53% similar to a (GALACTOKINASE TRANSFERASE KINASE) protein domain (PD017586) which is seen in O85253_THENE.","","Thu Jun 14 11:57:09 MDT 2001","","Thu Jun 14 11:57:09 MDT 2001","Thu Jun 14 11:57:09 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:57:09 MDT 2001","Thu Jun 14 11:57:09 MDT 2001","","","Fri Feb 23 15:07:11 MST 2001","Tue Dec 2 16:16:14 2003","Fri Feb 23 15:07:11 MST 2001","Mon Jun 25 16:55:26 MDT 2001","Mon Jun 25 16:55:26 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon May 14 17:54:59 MDT 2001","-56% similar to PDB:1S4E Pyrococcus furiosus galactokinase in complex with galactose, ADP and magnesium (E_value = 1.4E_56);-51% similar to PDB:1WUU crystal structure of human galactokinase complexed with MgAMPPNP and galactose (E_value = 7.9E_55);-55% similar to PDB:2CZ9 Crystal Structure of galactokinase from Pyrococcus horikoshi (E_value = 5.3E_51);-51% similar to PDB:1PIE Crystal Structure of Lactococcus lactis Galactokinase Complexed with Galactose (E_value = 1.1E_48);-45% similar to PDB:2A2C x-ray structure of human N-acetyl galactosamine kinase complexed with Mg-ADP and N-acetyl galactosamine 1-phosphate (E_value = 3.7E_28);","","","Residues 108 to 347 (E-value = 1.7e-37) place PG1427 in the GHMP_kinases family which is described as GHMP kinases putative ATP-binding protein (PF00288)","Mon Jun 25 16:55:26 MDT 2001","34541279","","","","","","1","","","PG1633" "PG1428","1715241","1714819","423","ATGAACCAAACAACGAAAACACTGTCGATCATTCTTATCGGTATGCTGACCTTCCTTGTCGGGGCAGCGCAAAACTCAACGCCCCCCCTTGTAGGGACGTGCTGGAGGAGGTACCTTTCTCCCGAAGAAATCAACCTTTCGGCAGACAACGTCAGCCCTTCTTTCAAAGCCTATATTGAATTGGCATTCAACGAAGGAAACAAAGCCATGCTCACCATCCGAATAGAAGGGATGGGGACAAAACCGGCAGAATCGAAAGAGGAAATCGACTACGAATGCAACGGTGACGATGAGGTTGTCATCATCACCAGACGAGACGGGGGTGGAGAAAATAGAGAGAAAGCTGCCATCAGCTGGACGGACGAAACGATGAAGTTAGTCACCGAAGGAGAAGAACAGATCTTCAAGCTCATCAGGAAAAAG","4.70","-5.09","15717","MNQTTKTLSIILIGMLTFLVGAAQNSTPPLVGTCWRRYLSPEEINLSADNVSPSFKAYIELAFNEGNKAMLTIRIEGMGTKPAESKEEIDYECNGDDEVVIITRRDGGGENREKAAISWTDETMKLVTEGEEQIFKLIRKK","1715241 1714819","TIGR ID: PG1634","hypothetical protein","Cytoplasm, Periplasm","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-22]?signal-peptide
tmhmm\"[10-28]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541280","","","","","","1","","","PG1634" "PG1429","1715954","1715310","645","ATGAAAACATCCTTGCACCGGATCCGGATGTTCCGGATCCTCTTTCTGCTTCTTTTCATTCCTGCTACGGGTTTGGCCCAACGCACAGCACAAGGCGAACTGCAAGCAGCAGCCAAGCACCTTGCAAACCCCGATGGAACACGAATAGACTTTCAGGCAGAAACCATAGCTCCCAACGACATGGGCTCATCACCCCTCTCTTCCGGTAGCCTCATCCTCAAAGACAATCAGTTTCGGCTCAGCTTCGGCTCTATCACAGCCGTATTCGATGGCAAGAAAACGCTCTCTTACTACGATGCTTCCGAGAACACGCTCAACATTTCCCACCCGACGAATGCGGAATTGGCTATGATCAACCCGCTGATCATTCTCACCCGATCCGAAGCCGGCTATCGCACAGCCATGCTGCCTCCGACGAAAGGAGAAAAGGTGATCGGTCTCACGCCTAAAACGGTTAACGGCATCAAACAAATCGAGCTACAGGTCGATTCTCGGGACTCACGTCCGACCGGTGCCATGATTACTCTGGAAGATGGGACAAAGATCGTTACAAAAATCACCGGTATCAGTCGCACGAAAGCTTCTCCCGGCCTGTTCCGACTCATGAAGAAAGACTATCCGGGCGTAGAAGTTGTCGATCTCCGA","10.50","7.72","23473","MKTSLHRIRMFRILFLLLFIPATGLAQRTAQGELQAAAKHLANPDGTRIDFQAETIAPNDMGSSPLSSGSLILKDNQFRLSFGSITAVFDGKKTLSYYDASENTLNISHPTNAELAMINPLIILTRSEAGYRTAMLPPTKGEKVIGLTPKTVNGIKQIELQVDSRDSRPTGAMITLEDGTKIVTKITGISRTKASPGLFRLMKKDYPGVEVVDLR","1715954 1715310","TIGR ID: PG1635","hypothetical protein","Periplasm, Cytoplasm","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
SSF89392\"[32-215]TSSF89392


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541281","","","","","","1","","","PG1635" "PG1430","1718553","1715971","2583","ATGAAATGTAGAGGGCACAAAAATTCGTACTTTTGTCAGGATTCGAACGAAATAAAATCTGCAAACAGCAATTCTCCCCTCTGTGGGGATCACAGTTTTTTCGAGATGGCTACAAAACAACGCAAAGGGAGCAGAAGCTCCGGACGAAATACATCCTCGGCCAATACAAGAAAGGGAGGCAACTTTCTGCGCCGTATATTCATCACACCCATACGGGACACTTTCAGCCGAGACAAGGTCGGCTTTGTCTTTGGTGCCATACTTCTGGCCATTGCGCTCTATACGACTATAGCCATAGGTTCGTTCTTCGTACATGGGGGAGTGGATCAGAGCGTTGTGCGAGATGCACCGGTCAGCGACATCCTCCTCGGTCGCGCTCCTGTGGCCAACCTGTGTGGCATCCGCGGTGCTGTATGGTCGGAATGGCTGATGAACGGGCTGTTCGGATTCGGAACGCTCTTCCTCCTTTTCTGCGTTTTTTCGCTATCGCTCAAGCTTATGGGTGTCGTCAAACGTATATCTGTCGTGAAACGGCTGATATTCTGCGGTGTGATGACCTTTTGGACGAGCCTTGCAGCTGCATTCATCTACAAACTTTCAGGTCTCGAAGGTTTTCTTCGTTGGGGCGGTATGCACGGTCAAGAATGGACACTGTTTCTCGAACGCAATATAGGTAAGGCCGGACTGATCATAGTTCTGCTCGTCCTTGCCGTCATCATAGCGGTAGTGGTACGCAGCGAATGTATGGGTTTCTTCCGCCGTTTGCTGGGACTAAGCTGGATCTCTATTCCCAAACTGCCGAAGAAAGAGAGGAAAAATAATCATGACGAGTCCGAAAACGAGTCGCTCGGCAATGGCTACGACACGGGTGAAAGCGAGAATCTCTCCGGCTATCTCAACAATTCGGAATACGAAGACGGCCCCGCAGGCGAAAGTGCTGATGATCCGGATGATTATATTCCACCTCATAAGGAAGAAGGGGAAAATGATTCTTCGCAGTCCATACAGATGGGATCGATGACTGTGGAACTGGCTCAAGAGGAAGAAAAGGCGGACGAAGCTCTGTTGGCGGAAATCAAAACGGATCCCAGAATGGACTTGGCTTCATACAAATTTCCTTCGGTCGATCTGCTTACCCAGTACGATCTGCAGCAACCCCCGATCGACATGAATGAGATAGAAGAGAACCAAAAGCGAATCATCGCCACGCTGGACAGCTTCAAGATTCATGTGACACCGATCAAGGCTACAGTAGGCCCTACGGTAACGCTCTATGAGGTTGCACCGGATTCGGGTATCAAAATCAGCCGCATTCGCAATCTTGAGGACGACATCGCCATGAGTCTCAAGGCTGTAGGAGGCATCCGTATCATTGCGCCGATGCCGGGCAAAGGGACGATCGGTATAGAAGTGCCCAATCGAAAGCCACAGACCGTGAGTATGTATTCAGTCTTGACTTCCAAGAAATACCAAGAGTCCGACATGGATCTGCCTGTGGCACTCGGCAAGACGATCACGAACGAAGTGTTCATCTTCGACCTTTGCAAGATGCCTCACCTCCTGATAGCAGGTGCTACGGGACAAGGGAAATCCGTGGGTCTGAATGCCATGATCACCTCCCTCTTGTACAAGAAGCATCCGGCCGAACTGAAGTTCGTACTCGTAGACCCGAAGATGCTGGAGTTCGCCGTCTACGAAGCCATCGAACGTCACTATCTGGCCAAGCTTCCCGACGAGGACAGAGCCATCGTGACGGATATGACCAAGGTGGTACCCACTCTGAACTCTCTCTGCATCGAAATGGACAATCGCTACCGCATGCTGACGGAAGCACGGGTTCGGAACATCAAGGAATACAACGATCAGATTATCAGTGGCAAGCTCAGCCGCTTGCACGGTCATAAATTCCTGCCCTATATCGTGCTGATCGTCGATGAGTTTGCCGATCTGATCATGACATCGGGTAAGGAGGTAGAACGTCCGATTACCCGCATCGCCCAGAAAGCGCGTGCCGCAGGTATTCACATGGTGGTAGCCACCCAACGGCCCTCCACGGACATCATCACCGGTATCATCAAAGCGAACTTTCCTGCTCGTATCGCCTTCAAAGTATTCTCCATGATCGACTCCCGAACCATTCTGGATCAACCGGGAGCCAATCAGCTCGTCGGCCGTGGAGATATGCTTTTCTATCAGGGAAAAGACACGGTACGTCTGCAATGCGCTTTCCTCGATACTCCGGAGTGCGAAGCCGTCACTCACCACATTTCGCTACAGGAAAGCTATACCTCGGCTTATGAGCTGCCGGAGTATGTGCCCGAAGGTGAAGAGGGAGGACCGAAAGCATTCAATCCGCAGGAGAAAGATCCTCTCTTCGAAGAAGTAGCCCGAATGGTAGTAAACTCACAACAGGGATCTACCTCTAATATCCAGAGAAAGTTCAATATCGGCTACAACCGTGCAGGGCGATTGATGGACCAACTGGAAGGTGCCGGTATCGTTTCGCCGCAGGACGGTAGCAAACCGAGACAGGTATTGATCCAAGACGAAATGAGTCTGGAACGCCTGTTCGAAACACTCCGA","6.60","-3.82","95779","MKCRGHKNSYFCQDSNEIKSANSNSPLCGDHSFFEMATKQRKGSRSSGRNTSSANTRKGGNFLRRIFITPIRDTFSRDKVGFVFGAILLAIALYTTIAIGSFFVHGGVDQSVVRDAPVSDILLGRAPVANLCGIRGAVWSEWLMNGLFGFGTLFLLFCVFSLSLKLMGVVKRISVVKRLIFCGVMTFWTSLAAAFIYKLSGLEGFLRWGGMHGQEWTLFLERNIGKAGLIIVLLVLAVIIAVVVRSECMGFFRRLLGLSWISIPKLPKKERKNNHDESENESLGNGYDTGESENLSGYLNNSEYEDGPAGESADDPDDYIPPHKEEGENDSSQSIQMGSMTVELAQEEEKADEALLAEIKTDPRMDLASYKFPSVDLLTQYDLQQPPIDMNEIEENQKRIIATLDSFKIHVTPIKATVGPTVTLYEVAPDSGIKISRIRNLEDDIAMSLKAVGGIRIIAPMPGKGTIGIEVPNRKPQTVSMYSVLTSKKYQESDMDLPVALGKTITNEVFIFDLCKMPHLLIAGATGQGKSVGLNAMITSLLYKKHPAELKFVLVDPKMLEFAVYEAIERHYLAKLPDEDRAIVTDMTKVVPTLNSLCIEMDNRYRMLTEARVRNIKEYNDQIISGKLSRLHGHKFLPYIVLIVDEFADLIMTSGKEVERPITRIAQKARAAGIHMVVATQRPSTDIITGIIKANFPARIAFKVFSMIDSRTILDQPGANQLVGRGDMLFYQGKDTVRLQCAFLDTPECEAVTHHISLQESYTSAYELPEYVPEGEEGGPKAFNPQEKDPLFEEVARMVVNSQQGSTSNIQRKFNIGYNRAGRLMDQLEGAGIVSPQDGSKPRQVLIQDEMSLERLFETLR","1718553 1715971","TIGR ID: PG1636","cell division protein (ATPase)","Inner membrane, Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 265-850 are 39% similar to pir||S09411 DNA translocase spoIIIE of Bacillus subtilis, residues 369-847 are 43% similar to pir||C69999 DNA translocase stage III sporulation homolog of Bacillus subtilis, residues 373-846 are 43% similar to gb|AAC73976.1| cell division protein of Escherichia coli K12, residues 369-847 are 43% similar to gb|AAD52663.1|AF177859_1 sporulation protein SpoIIIE of Sporosarcina ureae.This sequence is similar to BT4334.","
InterPro
IPR002543
Domain
Cell divisionFtsK/SpoIIIE
PF01580\"[480-685]TFtsK_SpoIIIE
PS50901\"[506-711]TFTSK
noIPR
unintegrated
unintegrated
PTHR22683\"[321-811]TPTHR22683
PTHR22683:SF1\"[321-811]TPTHR22683:SF1
SSF52540\"[452-757]TSSF52540


","BeTs to 8 clades of COG1674COG name: DNA segregation ATPase FtsK/SpoIIIE and related proteinsFunctional Class: DThe phylogenetic pattern of COG1674 is --------eBRhUJ--olinxNumber of proteins in this genome belonging to this COG is 1","***** PF01580 (FtsK/SpoIIIE family) with a combined E-value of 3.3e-35. PF01580A 518-529 PF01580B 576-608 PF01580C 640-659 PF01580D 662-691","Residues 484-710 are 49% similar to a (PROTEIN CELL DIVISION FTSK ATP-BINDING HOMOLOG) protein domain (PD002076) which is seen in O25722_HELPY.Residues 713-847 are 39% similar to a (PROTEIN CELL DIVISION FTSK) protein domain (PD006901) which is seen in SP3E_BACSU.Residues 369-479 are 45% similar to a (PROTEIN CELL DIVISION FTSK) protein domain (PD006902) which is seen in O34749_BACSU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Mar 22 12:27:31 MST 2000","Mon Jan 5 12:37:27 2004","Tue Mar 27 15:55:35 MST 2001","Tue Mar 27 15:55:35 MST 2001","Tue Mar 27 15:55:35 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 27 15:55:35 MST 2001","-59% similar to PDB:2IUS E. COLI FTSK MOTOR DOMAIN (E_value = 1.6E_99);-57% similar to PDB:2IUT P. AERUGINOSA FTSK MOTOR DOMAIN, DIMERIC (E_value = 1.8E_95);-60% similar to PDB:2IUU P. AERUGINOSA FTSK MOTOR DOMAIN, HEXAMER (E_value = 3.9E_82);-69% similar to PDB:2J5P E. COLI FTSK GAMMA DOMAIN (E_value = 8.8E_10);","","","Residues 480 to 685 (E-value = 2.8e-62) place PG1430 in the FtsK_SpoIIIE family which is described as FtsK/SpoIIIE family (PF01580)","Tue Mar 27 15:55:35 MST 2001","34541282","","","","","","1","","","PG1636" "PG1430.1","1718239","1718676","438","ATGTACGAAGAACGAACCTATGGCTATAGTCGTATAGAGCGCAATGGCCAGAAGTATGGCACCAAAGACAAAGCCGACCTTGTCTCGGCTGAAAGTGTCCCGTATGGGTGTGATGAATATACGGCGCAGAAAGTTGCCTCCCTTTCTTGTATTGGCCGAGGATGTATTTCGTCCGGAGCTTCTGCTCCCTTTGCGTTGTTTTGTAGCCATCTCGAAAAAACTGTGATCCCCACAGAGGGGAGAATTGCTGTTTGCAGATTTTATTTCGTTCGAATCCTGACAAAAGTACGAATTTTTGTGCCCTCTACATTTCATTTTCGCTTAAGTTTCGAACCGCTTCGAAGGTGTGGCATGTACAGAAAAAGGGTTGACAGTTGGAGAGAATCGATTCAACTGTCAACCCTTTTTCCGTATGGTGTCATTCGCCGGAGGAATACC","","","16803","MYEERTYGYSRIERNGQKYGTKDKADLVSAESVPYGCDEYTAQKVASLSCIGRGCISSGASAPFALFCSHLEKTVIPTEGRIAVCRFYFVRILTKVRIFVPSTFHFRLSFEPLRRCGMYRKRVDSWRESIQLSTLFPYGVIRRRNT","","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No hit found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG1431","1719743","1718760","984","GTGGAGTATGCCGCCGATGGCGATACCGTATTCCTCGAATCTATCGAAAACATGGAAGTCACCCGTCTTGATTCGGCCATCATCCGCAACGGCACATTCAGCTTCAAAGGCAGACAGGATTCGACCGTCGCTCGCTACCTCTCCTGTATGACCGCTACCGATGTATTCAGCATTCCGTTCTTTCTTGAGAACGGACACATCGAGGTAAAGATGAAGAGCGGAAACGAATCCGTCACCGGTACCCCGACGAACGACATCTATCAAGAGATACGCAGCAAAATGGCCGAAATTATGAACAAGATGAATGAAATTTACAGCGATTCCACCCTCACGGAAGAGCTAGCAGAGGAGAAAATGGATCAGATGGAACGGGAATACACCATCGCGCAGAAAGAGGCCGTGAAGAAAAATATCGCCAATCCTGTAGGAGTCTTTCTCTTCAAAGAACAATACTTCGAAAACAGTCTGGCCGAAAATCAGGCACTATTCCGACAGATTCCCCCCAAATACCTCAACGATCCGGTTCTGATGGGTATGCAAAAGCAAATGGAATCCCAAGAGAAAACGGATATGAATACCCCCTTCACCGACTTCACCATGCAGACTCCCGAAGGCAAGACCGTAAAGCTATCCGACTACGTAGGCAAGGGCAAGCTCGTCCTCGTCGATTTCTGGGCCAGCTGGTGTGGCCCCTGCCGTCAGGCCATGCCCGATCTGATCAAGGTTTATGCCGACTACAAGGGGAAACTTGAGATCGTAGGGGTTTCGCTCGATGAAAATCCGGGAGCATGGAAGAAAGCCATCGCAAGGCTCGGTATCACATGGCCGCAAATGTCCGATTACAAAGGCTGGGCAAGCCCGGCAGCTATGCAATACGGCGTCCATTCTATCCCTCATACCCTGCTGATCGACAACGACGGCACTATCATCGGCCGTAATCTGCATGGCGAAGAACTGACCGATAAGCTTTCTGCAGCCCTGCGC","4.80","-11.15","36988","VEYAADGDTVFLESIENMEVTRLDSAIIRNGTFSFKGRQDSTVARYLSCMTATDVFSIPFFLENGHIEVKMKSGNESVTGTPTNDIYQEIRSKMAEIMNKMNEIYSDSTLTEELAEEKMDQMEREYTIAQKEAVKKNIANPVGVFLFKEQYFENSLAENQALFRQIPPKYLNDPVLMGMQKQMESQEKTDMNTPFTDFTMQTPEGKTVKLSDYVGKGKLVLVDFWASWCGPCRQAMPDLIKVYADYKGKLEIVGVSLDENPGAWKKAIARLGITWPQMSDYKGWASPAAMQYGVHSIPHTLLIDNDGTIIGRNLHGEELTDKLSAALR","1719872 1718760","TIGR ID: PG1638","thioredoxin family protein","Cytoplasm, Periplasm, Inner membrane","This sequence corresponds to gi:34397599 in Genbank.Its nearest neighbor in the NR database is gi:29346702 from Bacteroides thetaiotaomicron VPI-5482.","
InterPro
IPR000866
Domain
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
PF00578\"[191-312]TAhpC-TSA
InterPro
IPR006662
Domain
Thioredoxin-related
PR00421\"[220-228]T\"[228-237]T\"[293-304]TTHIOREDOXIN
InterPro
IPR011594
Domain
Thioredoxin-like
PD003679\"[236-328]TQ7MUA0_PORGI_Q7MUA0;
InterPro
IPR012335
Domain
Thioredoxin fold
G3DSA:3.40.30.10\"[175-312]Tno description
InterPro
IPR015467
Domain
Thioredoxin family
PTHR10438\"[220-260]T\"[286-305]TTHIOREDOXIN-RELATED
noIPR
unintegrated
unintegrated
PTHR10438:SF13\"[220-260]T\"[286-305]TTHIOREDOXIN M(MITOCHONDRIAL)-TYPE


","BeTs to 13 clades of COG0526COG name: Thiol-disulfide isomerase and thioredoxinsFunctional Class: O,CThe phylogenetic pattern of COG0526 is AMTkYQVCEBRHUJgpoLINXNumber of proteins in this genome belonging to this COG is 7","***** IPB000063 (Thioredoxin family) with a combined E-value of 6.5e-09. IPB000063 221-233","Residues 212-266 are 54% similar to a (REDOX-ACTIVE CENTER PROTEIN ISOMERASE PRECURSOR) protein domain (PD000175) which is seen in THIO_STRCO.Residues 199-258 are 37% similar to a (PROTEIN PEROXIDASE ANTIOXIDANT REDUCTASE THIOREDOXIN) protein domain (PD000498) which is seen in O66542_AQUAE.Residues 200-309 are 33% similar to a (PROTEIN YKUV RV2874 TRANSMEMBRANE YBDE) protein domain (PD016168) which is seen in YS74_MYCTU.Residues 176-312 are 29% similar to a (PROTEIN REDOX-ACTIVE CENTER) protein domain (PD003679) which is seen in HELX_RHOCA.","","Thu Jun 14 11:57:29 MDT 2001","","Thu Jun 14 11:57:29 MDT 2001","Thu Jun 14 11:57:29 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:57:29 MDT 2001","Thu Jun 14 11:57:29 MDT 2001","","Fri Jul 29 09:32:23 2005","Fri Jul 29 09:29:46 2005","Fri Jul 29 09:32:23 2005","Tue Jan 7 14:37:02 2003","Mon Jun 25 17:00:11 MDT 2001","Mon Jun 25 17:00:11 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 6-324 have 33% similarity to PG0966, probable cytochrome c biogenesis protein; thiol:disulfide interchange protein.Residues 214-305 have 33% similarity to PG0030, thioredoxin. Also weak similarities to PG1903, putative thioredoxin protein, and PG0246, thioredoxin.","Mon Jun 25 17:00:11 MDT 2001","Mon Mar 22 08:31:42 2004","-66% similar to PDB:1T00 The structure of thioredoxin from S. coelicolor (E_value = 1.8E_12);-54% similar to PDB:1ST9 Crystal Structure of a Soluble Domain of ResA in the Oxidised Form (E_value = 2.6E_11);-54% similar to PDB:1SU9 Reduced structure of the soluble domain of ResA (E_value = 2.6E_11);-54% similar to PDB:2F9S 2nd Crystal Structure Of A Soluble Domain Of ResA In The Oxidised Form (E_value = 2.6E_11);-54% similar to PDB:2H1B ResA E80Q (E_value = 2.6E_11);","","","Residues 206 to 328 (E-value = 7.9e-06) place PG1431 in the Thioredoxin family which is described as Thioredoxin (PF00085)","Mon Jun 25 17:00:11 MDT 2001","34541283","","","","","","1","","","PG1638" "PG1432","1721338","1720031","1308","ATGAACAGGCGCATCCTGCGCTTGGCTATTCCGAATATCATCTCCAACATTACCGTACCGCTCCTCTCCATCGTGGATGTAGGGCTGGCCGGTCGTATGGACACGGCCGACTCTATCGGGGCAGTGGCTGTGGCTTCGGGGGTGGTCAATTTCGTCTTTTGGCTCTTCGCCTTCCTCCGTATGGGGACTACGGGATTCACGGCACAGGCTTTCGGGCGTAGCGATGTGCGAGCCATCACACGCTATCTGGCACGTGGCATCGCGATGGCAGTTGTCGCAGCCCTGCTTCTTCTCATAGCAGCTCCTCTGACAGAACGCTTCGGGTATCTGCTGGCTTCGGGTCAGGAGACCATCGGACGAGAGGCACGCGAATATATCCGCATCGCTCTGTGGGGAGCGCCCGCAGCCCTGCTCGTCTATGTCTTCAACGGCTGGTATGTGGGGATGCAGGACACACGCGTTCCGATGGTTGTAGCCATCGTTTCCAATATGGTCAATATCGGCCTGAGTATTTTCTTCGTACAGGGACTTGATATGAGAGTGGGAGGGCTTGCCGCCGGAACGATCGCTGCCCAATATGTCGGTCTGGCATTACTCTCGGGCATTGCCTTTTTTCGCTACCGACGCGTACTGCGCTTTTTCCGCGCAAGCAGCCTGACAGATACTTCGGGCTACGGAGCCTACCTGCGCACCGGAGGCGACCTTTTTGTTCGCACCGCCTTGCTCGGTACGGTGACCCTCTTTTTCACCTCTGCGTCCTCTGCTATGGGAGAGATCACTGTGGCAGCAAATGCTCTGCTGATGCAACTCTTCASCCTCTTCTCCTACTTTATGGACGGATTCGCCTACGCCGGCGAAGCACTTACGGGACGATACATAGGTGCACGCCGGTCGGACGAATTGCGCCTGATGATCCATCGCCTTTTTCGCATCGGGACGGTCGTCTCCCTCATGGCCACCTTGCTCTATCTGCTGTTCCCGGCCGCTTTGCTTTCGGTGCTGAGTGACAAATACGAAGTGATAGAGCATGCTCGCCGTTTTGCTTTCTGGGCAGGAGTGGTACCGATCGTCTCCTTTGCCGCTTTCCTGTGGGATGGAGTATTCGTGGGGGCCACTGCATCAAAAGCCATGCGGAGAGCCATGACAGCTGCTTTCGTTGTTTTCTTCGCCACTTTCTTCCTCCTTCGTGGAGCCTTGGGCGAGACAGCCCTTTGGCTCGCCTTCGTCCTCTACCTCCTCACGCGCAGCCTGATGCAGACAGTATGGTACCGCAGGCATTTTTTCGCCACGAATCGTCTGCAAAGGTGC","11.40","18.67","47855","MNRRILRLAIPNIISNITVPLLSIVDVGLAGRMDTADSIGAVAVASGVVNFVFWLFAFLRMGTTGFTAQAFGRSDVRAITRYLARGIAMAVVAALLLLIAAPLTERFGYLLASGQETIGREAREYIRIALWGAPAALLVYVFNGWYVGMQDTRVPMVVAIVSNMVNIGLSIFFVQGLDMRVGGLAAGTIAAQYVGLALLSGIAFFRYRRVLRFFRASSLTDTSGYGAYLRTGGDLFVRTALLGTVTLFFTSASSAMGEITVAANALLMQLFXLFSYFMDGFAYAGEALTGRYIGARRSDELRLMIHRLFRIGTVVSLMATLLYLLFPAALLSVLSDKYEVIEHARRFAFWAGVVPIVSFAAFLWDGVFVGATASKAMRRAMTAAFVVFFATFFLLRGALGETALWLAFVLYLLTRSLMQTVWYRRHFFATNRLQRC","1721362 1720031","In E.coli, this is an integral membrane protein induced by DNA damage.TIGR ID: PG1640","DNA-damage-inducible protein F","Inner membrane, Cytoplasm","Several hits in gapped BLAST to DNA damge-inducible proteins, e.g. residues 1-415 are 35% similar to the protein from V.cholerae (gb|AAF93268.1), residues 2-417 are 31% similar to (AP001511) of Bacillus halodurans.This sequence is similar to BT2241.","
InterPro
IPR002528
Family
Multi antimicrobial extrusion protein MatE
PTHR11206\"[25-426]TMULTIDRUG RESISTANCE PUMP
PF01554\"[11-172]T\"[235-394]TMatE
TIGR00797\"[11-405]TmatE: MATE efflux family protein
noIPR
unintegrated
unintegrated
PTHR11206:SF3\"[25-426]TDNA-DAMAGE-INDUCIBLE PROTEIN F
signalp\"[1-30]?signal-peptide
tmhmm\"[12-32]?\"[38-58]?\"[82-102]?\"[127-147]?\"[157-177]?\"[183-203]?\"[245-265]?\"[271-293]?\"[314-334]?\"[348-368]?\"[380-398]?\"[404-424]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 234-412 are 29% similar to a (DNA-DAMAGE-INDUCIBLE PROTEIN F TRANSMEMBRANE) protein domain (PD037976) which is seen in DINF_ECOLI.Residues 3-85 are 40% similar to a (PROTEIN TRANSMEMBRANE CONSERVED INTEGRAL MEMBRANE LONG) protein domain (PD001078) which is seen in DINF_ECOLI.Residues 111-295 are 28% similar to a (HYPOTHETICAL 44.8 KD PROTEIN) protein domain (PD133670) which is seen in P71616_MYCTU.Residues 111-198 are 36% similar to a (PROTEIN TRANSMEMBRANE MVIN MEMBRANE TRANSPORTER) protein domain (PD001019) which is seen in DINF_ECOLI.","","Thu Jun 14 11:57:47 MDT 2001","","Thu Jun 14 11:57:47 MDT 2001","Thu Jun 14 11:57:47 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 11:57:47 MDT 2001","Thu Jun 14 11:57:47 MDT 2001","","Mon Jun 25 17:04:32 MDT 2001","Mon May 14 18:18:06 MDT 2001","Wed Dec 10 17:01:43 2003","Tue Feb 6 13:42:00 MST 2001","","Mon Jun 25 17:04:32 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1432 is weakly similar to PG0577, a predicted DNA damage-inducible protein; residues 4-417 are 21% similar to PG0577. Also weakly similar to PG0006, probable integral membrane protein, PG0999, conserved hypothetical protein, PG1265 conserved hypothetical protein (probable integral membrane protein), PG1265 conserved hypothetical protein (probable integral membrane protein), and PG0742 conserved hypothetical membrane protein.","Mon Jun 25 17:04:32 MDT 2001","Mon May 14 18:18:06 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 11 to 172 (E-value = 9e-25) place PG1432 in the MatE family which is described as MatE (PF01554)Residues 235 to 394 (E-value = 2e-07) place PG1432 in the MatE family which is described as MatE (PF01554)","Wed Dec 10 17:01:43 2003","34541285","","","","","","1","","","PG1640" "PG1433","1721856","1721356","501","ATGAAGCCACATAAAATCCTATTCGTATGTCTCGGCAACATCTGTCGCTCTCCGTCTGCCGAGGCTGTCTTTCGCTCGTATGTAGAAGAGCAGGGGCATGCCGATCGCTTCCACATCGATTCGGCCGGACTGAGCAATTACCATCAGGGGGAAAAGGCCGATGCCCGAATGCGTGCACACGCTGCTCGCCGGGGCTACGATCTCACTTCGCTCTCCCGTCCGGTGGAGTATGAGGATTTCGAACGATTCGATTATATCATCGGCATGGACTTTGCCAATCGAGAGCGGCTGCAAGAACTGGCTCCGACCGAAGAGGCTGCGGCCAAGATCCGTCTGATGACGGATTTCAGCAGTAGCGGTATTCACGACCATGTCCCCGATCCGTACTATGGAGGAGCATCCGGCTTCGAGCTGGTGCTGGACATTCTGGAAGAGTGCACGGCCGGACTGTTTTCCTATCTGACCGAACCTCATGACAACTCCTCCCTATCCGCATGCGAC","4.90","-10.26","18739","MKPHKILFVCLGNICRSPSAEAVFRSYVEEQGHADRFHIDSAGLSNYHQGEKADARMRAHAARRGYDLTSLSRPVEYEDFERFDYIIGMDFANRERLQELAPTEEAAAKIRLMTDFSSSGIHDHVPDPYYGGASGFELVLDILEECTAGLFSYLTEPHDNSSLSACD","1721856 1721356","SwissProt: acts on tyrosine phosphorylated proteins, low molecular weight aryl phosphates and natural and synthetic acyl phosphates.Unfortunately Ptp-A is being proposed to denote a tripeptidyl peptidase, PG1196.TIGR ID: PG1641","protein-tyrosine-phosphatase (low molecular weight protein-tyrosine-phosphatase)","Cytoplasm, Outer membrane","Residues 2-155 have 42% similarity to AL138652, A. thaliana protein-tyrosine-phosphatase-like protein.Residues 5-144 have 47% similarity to AE004723, P. aeruginosa phosphotyrosine protein phosphatase.Residues 4-156 have 40% similarity to AL096823, S. coelicolor low molecular weight protein-tyrosine-phosphatase.","
InterPro
IPR000106
Family
Low molecular weight phosphotyrosine protein phosphatase
PR00719\"[6-23]T\"[49-65]T\"[82-97]T\"[106-119]T\"[125-140]TLMWPTPASE
PTHR11717\"[10-160]TLow_mwt_PTPase
PF01451\"[4-153]TLMWPc
SM00226\"[4-153]TLMWPc
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.270\"[5-152]TG3DSA:3.40.50.270
PTHR11717:SF7\"[10-160]TPTHR11717:SF7
SSF52788\"[2-154]TSSF52788


","BeTs to 7 clades of COG0394COG name: Protein-tyrosine-phosphataseFunctional Class: TThe phylogenetic pattern of COG0394 is A-t-yQ-CEBR----------Number of proteins in this genome belonging to this COG is 1","***** PR00719 (LMW phosphotyrosine protein phosphatase signature) with a combined E-value of 1.4e-27. PR00719A 6-23 PR00719B 49-65 PR00719C 82-97 PR00719E 125-140","Residues 65-144 are 40% similar to a (HYDROLASE LOW MOLECULAR WEIGHT PROTEIN PHOSPHATASE) protein domain (PD010795) which is seen in PTPA_STRCO.Residues 6-45 are 62% similar to a (HYDROLASE LO MOLECULAR EIGHT) protein domain (PD002132) which is seen in PPAC_RAT.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Tue Jul 1 20:08:04 2008","Tue Jun 5 10:08:00 MDT 2001","Fri Feb 23 15:30:09 MST 2001","Fri Feb 23 15:30:09 MST 2001","Fri Feb 23 15:30:09 MST 2001","Fri Feb 23 15:30:09 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Jul 1 20:08:04 2008","-52% similar to PDB:2CWD Crystal Structure of TT1001 protein from Thermus thermophilus HB8 (E_value = 8.1E_21);-57% similar to PDB:1D1P CRYSTAL STRUCTURE OF A YEAST LOW MOLECULAR WEIGHT PROTEIN TYROSINE PHOSPHATASE (LTP1) (E_value = 4.0E_20);-52% similar to PDB:5PNT CRYSTAL STRUCTURE OF A HUMAN LOW MOLECULAR WEIGHT PHOSPHOTYROSYL PHOSPHATASE. IMPLICATIONS FOR SUBSTRATE SPECIFICITY (E_value = 1.2E_19);-56% similar to PDB:1D1Q CRYSTAL STRUCTURE OF A YEAST LOW MOLECULAR WEIGHT PROTEIN TYROSINE PHOSPHATASE (LTP1) COMPLEXED WITH THE SUBSTRATE PNPP (E_value = 4.4E_19);-56% similar to PDB:1D2A CRYSTAL STRUCTURE OF A YEAST LOW MOLECULAR WEIGHT PROTEIN TYROSINE PHOSPHATASE (LTP1) COMPLEXED WITH THE ACTIVATOR ADENINE (E_value = 4.4E_19);","","","Residues 4 to 153 (E-value = 2.3e-38) place PG1433 in the LMWPc family which is described as Low molecular weight phosphotyrosine protein phosphatase (PF01451)","Mon May 14 18:38:02 MDT 2001","34541286","","Simionato MR, Tucker CM, Kuboniwa M, Lamont G, Demuth DR, Tribble GD, Lamont RJ., Porphyromonas gingivalis genes involved in community development with Streptococcus gordonii., Infect Immun. 2006 Nov;74(11):6419-28. Epub 2006 Aug 21., PMID: 16923784Maeda K, Tribble GD, Tucker CM, Anaya C, Shizukuishi S, Lewis JP, Demuth DR, Lamont RJ., A Porphyromonas gingivalis Tyrosine Phosphatase is a Multifunctional Regulator of Virulence Attributes., Mol Microbiol. 2008 Jun 18., PMID: 18573179","Saiki K, Konishi K., Identification of a Porphyromonas gingivalis novel protein sov required for the secretion of gingipains., Microbiol Immunol. 2007;51(5):483-91., PMID: 17579257","Tue Jul 1 20:08:04 2008","Tue Jul 1 20:08:04 2008","1","","","PG1641" "PG1434","1724071","1721867","2205","ATGAAGGAGCAAAAACGTTTTCCCGTAGTGGGAATGCGGTGTGCCGGCTGTGCGCATAGCGTAGAGCAGGCTGCCTCCAAGGTAGAAGGCATTAGCGATGCGAACGTCCAACTCGCCGAGAATATACTCTCTGTATCGGTGGACGAAAGGTTAACTTCGGCAGAGGATCTGCGCAAAGCTATCCGCAGCATAGGATTCGACCTGATAGTGGAGGATTCGGAGGCAGAGCAACTTCGCCGGCGCGATGCCATGGAAGCAGCAGAACTGAGACGGATGAAGTGCGATACGATCATAGCTTGGTCGTCCGCCATCCTGCTGATGCTTCTGATGCTAATGCCGCATTTCCAGATGATGCCCTACCTGATGATGCTCATAGCCTTGCCCGGATACACATGGGCAGGAAGGACTTTCCACCGATCGGCACTCAAGCAACTGCGCCACGGCGTATTTTCAATGGATACGCTGGTATCGTTGAGCACCACTATCTCCTTTTTTTATAGCCTGATAGTCCTGCTGTTTTTCCGCGAAGGGCCGGCCGGGATGAAGCTCCACCTCTACTTCGATGCTTCGGCCATGATCATCGCATTTGTCCTACTGGGCAAACTCATGGAAAAGCGTGCCGGCCGAAGCACGGGGCAAGCCATTCGTGAACTGATGCGACTACAGCCGGCGGAGGCATTGGTCGTGCGCAACGGACGCGAGACCGTGATGCCCATTGCTGCGCTCGTCGCAGGCGACTTCGTTCGCGTACGTCCGGGCGAGCAGATACCCGTGGACGGTATCGTGACCGAAGGCAGCAGCTCCGTACAAGAGAGCATGATCAGTGGCGAGCCCTTACCGCGAGAGAAAGAAGTCGGCTCTATGGTTTTCTCCGGCACGATCAACGGCTCCGGTGTCCTCACCGTACAGTCTACTCACGTAGGCAGCGACACGGTACTCGGGCGCATCATCCGCACAGTCCGCGAGGCACAGGCCAGCAAAGCGCCTATCCAACGTCTGGCTGACCGGATCGCCGGCATATTCGTACCCATAGTCATCGGGCTATCCATCCTTACCTATATTATATGGCAACTGACGGGAGCAGCCGATGCTTCGGTCTACGGACTCCTCTGTGCCATATCGGTGCTGGTGATTGCCTGCCCGTGCGCACTCGGTCTGGCTACGCCTACGGCTCTGGTCGTAGGGATCGGACGCTCGGCACGAAATGGTATCCTCGTACGCAATGCCGAAGCACTGGAGCGTTTCGCTACCATCGATGCCGTGGTCTTGGATAAGACAGGCACGCTCACCATAGGCAAGCCGGAAGTGACCGGTATCGATTGGTTTGTATCGGATACCGATGTACCGAAAGTACGCCGGCTGCTCTACTCCGCCGAGATTCTTAGCACGCATCCACTTGCAGCTGCCATTTGCCGAGCCTTTGCCGAAGACGGCAGGACGGAGGAGCTGTCGGAAGTCCAGAATTTCCCCGGTCGTGGGATCGAATTTTCCTTCGAAGGAGAGATCTACAGAGTGGGCAACCAGACCTTTGTCGAGGAGCTTGGCGCACAGATACCGACGGATATAACCGCTCTGTCGGAGGATGCAGCCATCCTCTATTTCTCACGTGCCGAAAGATTATTGGGACGTTTCTGTGTGACCGACGAACTGCAACCTCAGGCAGCAGAGGTGCTCGCACAGCTCCATCGACATGGCATTCGCACCATTATGCTGACGGGCGACCGCCCCGAAACAGCGGAAGCATTGGCTCGCAAGCTGGGTTTGCAGGATTATCGTGGCGGCATGATGCCCTCGGACAAGGCCGACTATATACGAATACTCAAGGACAAGGGACACCACGTAGCGATGGTGGGCGACGGCATAAACGACTCCGAGGCACTCAGTACGGCGGACGTCAGCGTAGCCATGGGTGATGGCAGCCATATAGCCATAGAAGTGGCAGGAATCACGCTGATGCGCTCCGATCTGCGCCTGCTGCCTGCTGCTTTCGAGCTGTCGCGCGCCACAAGACGTACAGTCAAAGAGAATCTCTTTTGGGCTATGTGCTACAATCTGATTGCCATCCCGATAGCCGCCGGTCTGCTCTTCCCCGTGAACGGGTTCCTCCTGAACCCTGCCATTGCAGGGGCCGCCATGGCTTTCAGCTCTATTTCGGTGGTGACCAACAGCTTGCGACTGCGTACCAAGCGACTACCTTTGCTTCGA","6.90","-0.47","79982","MKEQKRFPVVGMRCAGCAHSVEQAASKVEGISDANVQLAENILSVSVDERLTSAEDLRKAIRSIGFDLIVEDSEAEQLRRRDAMEAAELRRMKCDTIIAWSSAILLMLLMLMPHFQMMPYLMMLIALPGYTWAGRTFHRSALKQLRHGVFSMDTLVSLSTTISFFYSLIVLLFFREGPAGMKLHLYFDASAMIIAFVLLGKLMEKRAGRSTGQAIRELMRLQPAEALVVRNGRETVMPIAALVAGDFVRVRPGEQIPVDGIVTEGSSSVQESMISGEPLPREKEVGSMVFSGTINGSGVLTVQSTHVGSDTVLGRIIRTVREAQASKAPIQRLADRIAGIFVPIVIGLSILTYIIWQLTGAADASVYGLLCAISVLVIACPCALGLATPTALVVGIGRSARNGILVRNAEALERFATIDAVVLDKTGTLTIGKPEVTGIDWFVSDTDVPKVRRLLYSAEILSTHPLAAAICRAFAEDGRTEELSEVQNFPGRGIEFSFEGEIYRVGNQTFVEELGAQIPTDITALSEDAAILYFSRAERLLGRFCVTDELQPQAAEVLAQLHRHGIRTIMLTGDRPETAEALARKLGLQDYRGGMMPSDKADYIRILKDKGHHVAMVGDGINDSEALSTADVSVAMGDGSHIAIEVAGITLMRSDLRLLPAAFELSRATRRTVKENLFWAMCYNLIAIPIAAGLLFPVNGFLLNPAIAGAAMAFSSISVVTNSLRLRTKRLPLLR","1724071 1721867","TIGR ID: PG1642","cation-transporting ATPase","Inner membrane, Cytoplasm","Numerous significant hits to ATPase proteins in gapped BLAST; e.g. residues 11-723 are 40% similar to dbj|BAA17268.1| cation-transporting ATPase of Synechocystis sp., residues 3-723 are 39% similar to dbj|BAB04276.1| copper-transporting ATPase of Bacillus halodurans, residues 11-723 are 40% similar to dbj|BAB33960.1| Cu(I)-translocation P-type ATPase of Escherichia coli O157:H7.This sequence is similar to BT1091.","
InterPro
IPR000150
Family
Cof protein
PS01229\"[617-639]?COF_2
InterPro
IPR001756
Family
ATPase, P-type copper-transporter
PR00943\"[48-68]T\"[137-156]T\"[190-209]T\"[210-228]T\"[343-357]T\"[405-420]T\"[594-611]TCUATPASE
InterPro
IPR001757
Family
ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter
PR00119\"[270-284]T\"[422-436]T\"[564-574]T\"[617-636]T\"[640-652]TCATATPASE
PTHR11939\"[6-732]TCATION-TRANSPORTING ATPASE
TIGR01494\"[192-439]T\"[532-709]TATPase_P-type: ATPase, P-type (transporting
PS00154\"[424-430]?ATPASE_E1_E2
InterPro
IPR002119
Family
Histone H2A
PS00046\"[692-698]?HISTONE_H2A
InterPro
IPR005834
Domain
Haloacid dehalogenase-like hydrolase
PF00702\"[418-640]THydrolase
InterPro
IPR006121
Domain
Heavy metal transport/detoxification protein
PF00403\"[6-70]THMA
PS50846\"[4-70]THMA_2
InterPro
IPR006403
Family
ATPase, P type cation/copper-transporter
TIGR01511\"[133-727]TATPase-IB1_Cu: copper-translocating P-type
InterPro
IPR006416
Family
Heavy metal translocating P-type ATPase
TIGR01525\"[152-726]TATPase-IB_hvy: heavy metal translocating P-
InterPro
IPR008250
Domain
E1-E2 ATPase-associated region
PF00122\"[192-414]TE1-E2_ATPase
noIPR
unintegrated
unintegrated
G3DSA:2.70.150.10\"[112-299]Tno description
G3DSA:3.30.70.100\"[1-80]Tno description
G3DSA:3.40.50.1000\"[537-661]Tno description
PTHR11939:SF39\"[6-732]TCOPPER-TRANSPORTING ATPASE P-TYPE (COPA)
tmhmm\"[96-114]?\"[120-134]?\"[155-175]?\"[185-203]?\"[337-357]?\"[367-387]?\"[676-696]?\"[706-726]?transmembrane_regions


","BeTs to 12 clades of COG2217COG name: Cation transport ATPasesFunctional Class: PThe phylogenetic pattern of COG2217 is AmT-YQvCEBRhUJ---lin-Number of proteins in this genome belonging to this COG is 2","***** IPB001757 (E1-E2 ATPases phosphorylation site) with a combined E-value of 5.7e-44. IPB001757A 380-416 IPB001757B 418-430 IPB001757D 548-588 IPB001757F 614-637***** IPB001934 (Heavy-metal-associated domain) with a combined E-value of 1.7e-10. IPB001934A 9-31 IPB001934B 382-388***** PR00943 (Copper-transporting ATPase signature) with a combined E-value of 1.7e-07. PR00943B 48-68 PR00943D 137-156 PR00943F 210-228 PR00943G 343-357 PR00943I 594-611***** PR00940 (Cation-transporting P-type ATPase A signature) with a combined E-value of 1.8e-06. PR00940D 124-146 PR00940H 298-318","Residues 453-581 are 35% similar to a (PROBABLE COPPER-TRANSPORTING ATPASE SYNA) protein domain (PD169626) which is seen in ATSY_SYNP7.Residues 345-439 are 53% similar to a (ATPASE HYDROLASE TRANSMEMBRANE PHOSPHORYLATION) protein domain (PD000466) which is seen in Q9ZHC7_SALTY.Residues 292-341 are 58% similar to a (ATPASE HYDROLASE TRANSMEMBRANE PHOSPHORYLATION) protein domain (PD000764) which is seen in O17537_CAEEL.Residues 113-207 are 40% similar to a (ATPASE HYDROLASE TRANSMEMBRANE) protein domain (PD001539) which is seen in ATCS_SYNY3.Residues 569-635 are 56% similar to a (ATPASE HYDROLASE TRANSMEMBRANE PHOSPHORYLATION) protein domain (PD000121) which is seen in O48580_ARATH.Residues 636-723 are 52% similar to a (ATPASE HYDROLASE TRANSMEMBRANE PHOSPHORYLATION) protein domain (PD000140) which is seen in Q9ZHC7_SALTY.Residues 211-289 are 54% similar to a (ATPASE HYDROLASE TRANSMEMBRANE PHOSPHORYLATION) protein domain (PD000132) which is seen in O29777_ARCFU.Residues 215-589 are 21% similar to a (L2385.6 PROTEIN) protein domain (PD217475) which is seen in O97198_LEIMA.","","","","","","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","","","","","Wed Mar 22 11:56:21 MST 2000","Thu Dec 4 10:41:08 2003","Thu Mar 15 14:49:32 MST 2001","Mon Jun 25 17:05:45 MDT 2001","Mon Jun 25 17:05:45 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 228-687 are 22% similar to PG0838, calcium ion-transporting ATPase.","Thu Mar 15 14:49:32 MST 2001","Thu Mar 15 14:49:32 MST 2001","-55% similar to PDB:2B8E CopA ATP Binding Domain (E_value = 1.3E_35);-72% similar to PDB:2HC8 Structure of the A. fulgidus CopA A-domain (E_value = 1.9E_26);-39% similar to PDB:1MHS Model of Neurospora crassa proton ATPase (E_value = 6.9E_24);-43% similar to PDB:1IWO Crystal structure of the SR Ca2+-ATPase in the absence of Ca2+ (E_value = 4.5E_15);-43% similar to PDB:1KJU Ca2+-ATPase in the E2 State (E_value = 4.5E_15);","","","Residues 6 to 70 (E-value = 1.9e-12) place PG1434 in the HMA family which is described as Heavy-metal-associated domain (PF00403)Residues 192 to 414 (E-value = 1.9e-93) place PG1434 in the E1-E2_ATPase family which is described as E1-E2 ATPase (PF00122)Residues 418 to 640 (E-value = 3.5e-32) place PG1434 in the Hydrolase family which is described as haloacid dehalogenase-like hydrolase (PF00702)","Thu Dec 4 10:41:08 2003","","","","","","","1","","","PG1642" "PG1435","1724370","1724110","261","ATGTACAAGCCAAAGTCAAAAACAAAGGATCATAAGAAAAAACTACTCGTCAAGATGAAAACAACGACCTTTTCCGTAGAAGGCATGATGTGTGGCGGTTGTGCTGCAAGTGTAGAGAAAGCAGCTCTCGGTGTACAAGGCGTACAAACGGCATTCGCTTCTCTGGATTCCCATAGTCTTACAGTGGATTATGCTCCGGAGACAACCTCACCGGAGGCAATAATGAAGGCTGTACGCCTCGCCGGATTCGAGTGTAAGCTC","9.80","5.32","9312","MYKPKSKTKDHKKKLLVKMKTTTFSVEGMMCGGCAASVEKAALGVQGVQTAFASLDSHSLTVDYAPETTSPEAIMKAVRLAGFECKL","1724370 1724110","NO TIGR ID corresponds to this gene.","probable cation-transporting ATPase","Periplasm, Inner membrane","Residues 19-87 have 39% similarity to gb|AAF41648,Neisseria meningitidis, mercury transport periplasmic protein.Residues 24-86 have 36% similarity to AP001508, B. halodurans copper-transporting ATPase (CopA).Residues 24-87 have 34% similarity to AF296446, S. mutans CopA.Residues 25-83 have 44% similarity to AE005106, heavy-metal transporting CPx-type ATPase; Cpx.","
InterPro
IPR001757
Family
ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter
PTHR11939\"[23-84]TCATION-TRANSPORTING ATPASE
InterPro
IPR006121
Domain
Heavy metal transport/detoxification protein
PF00403\"[23-87]THMA
PS50846\"[21-87]THMA_2
noIPR
unintegrated
unintegrated
G3DSA:3.30.70.100\"[15-85]Tno description
PTHR11939:SF39\"[23-84]TCOPPER-TRANSPORTING ATPASE P-TYPE (COPA)


","BeTs to 9 clades of COG2217COG name: Cation transport ATPasesFunctional Class: PThe phylogenetic pattern of COG2217 is AmT-YQvCEBRhUJ---lin-Number of proteins in this genome belonging to this COG is 2","***** IPB001934 (Heavy-metal-associated domain) with a combined E-value of 6.4e-08. IPB001934A 26-48","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon May 14 18:46:58 MDT 2001","Mon May 14 18:46:58 MDT 2001","Fri Feb 23 15:39:34 MST 2001","Fri Feb 23 15:39:34 MST 2001","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 24-84 have 44% similarity to PG1434, cation-transporting ATPase.","Fri Feb 23 15:39:34 MST 2001","Mon May 14 18:46:58 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 23 to 87 (E-value = 6.6e-10) place PG1435 in the HMA family which is described as Heavy-metal-associated domain (PF00403)","Mon May 14 18:46:58 MDT 2001","","","","","","","1","","","" "PG1436","1725712","1724777","936","CTGCTTGGCTTTAGCCGTCAGGCCTTTTATAAACGTCATCTCAACGATTTAGCACAACATGAGGAGGATGTCCTATGCAGTAGTATCATCCAATATTGTTGGCACTTAAGACAAGCAGAGCACCTACCTCAAGCCGGCTTCCGAGAGCTCATGGTGCTTTGTCAGCAATACTTCGGCCCCAAGTTCACGCTTGGGCGCGATCGCTTTTGCGCCCTACTCAGACGCCATGGTATGATGCTGCGCAAACGGTCTGTGCGCCCTCGGACAACCAACTCTCGGCATAGGCTCTACAAGTATGAAGACCTGCTCAATACAGAGCCTAAGTTTGTGCCTCAAAGACCTGGGGAACTCCTTGTAGCAGACATCACCTACGTGGCTTACCAAGATGGGTTTGCCTATCTCTCCCTACTGACCGATGCCTATAGTCGCTGTATCGTAGGGTATTGCTTACATCCGACCCTGGAAGTTGAAGGCTGTTTGAATGCTCTGCATCAAGCCTTTGCTTTCTACGATCAACATCAAATTGATACGACCAATATGATTCATCATAGCGACCGAGGCATTCAGTATGCCGGTAAGAGTTACACCGATCTGTTGCATGGGCGAGGCTGGCGCATCAGTATGACTCAGACGGGAGATCCTCAGCATAATGCATTGGCCGAGCGGATGAACAATACGCTCAAGAACTCGTGGCACATCTCCTCTTCGAAGCAGTCTTTTGATCAAGCACTCCTTTCTGTAGAACAAGCCGTGCGCATGTACAACGAGGCGCGTCCACATCAAGCTCTAAGGGCGAAAACGCCTATGCAAGTCATTGCGCCAGAGTCTAAAAATCCGTTACTAACGAGGAGGGAGCATGGGCCAGAGATTGCCCCCGAGCTATACCGAAGGATGAATGTCAGACAAAGAGCTAACTTTGCTCGTGTCAACCGAAAT","10.20","15.52","36374","LLGFSRQAFYKRHLNDLAQHEEDVLCSSIIQYCWHLRQAEHLPQAGFRELMVLCQQYFGPKFTLGRDRFCALLRRHGMMLRKRSVRPRTTNSRHRLYKYEDLLNTEPKFVPQRPGELLVADITYVAYQDGFAYLSLLTDAYSRCIVGYCLHPTLEVEGCLNALHQAFAFYDQHQIDTTNMIHHSDRGIQYAGKSYTDLLHGRGWRISMTQTGDPQHNALAERMNNTLKNSWHISSSKQSFDQALLSVEQAVRMYNEARPHQALRAKTPMQVIAPESKNPLLTRREHGPEIAPELYRRMNVRQRANFARVNRN","1725562 1724777","One of eleven ISPg5 elements in the genome (see Paralogs). Califano et al. report considerable strain diversity of these (Infect. Immun. 68 (9), 5247-5253 (2000)).Member of the IS3 family of insertion elements. See PG1437 for associated ORF.TIGR ID: PG1644","ISPg5 transposase","Cytoplasm","PG1436 is equivalent to the previously reported gb|AAF69128.1| in GenBANK.Numerous significant hits in gapped BLAST to transposase proteins; e.g. residues 91-213 are 55% similar to transposase homolog (U67062) of Bacteriodes thetaiotaomicrom, residues 5-268 are 36% similar to (AE004463) hypothetical protein of Pseudomonas aeruginosa, residues 64-287 are 32% similar to InsB (AF153317) of Shigella dysenteriae, residues 64-268 are 33% similar to Hp1 (AF081284) of E.coli.","
InterPro
IPR001584
Domain
Integrase, catalytic core
PF00665\"[110-273]Trve
PS50994\"[110-276]TINTEGRASE
noIPR
unintegrated
unintegrated
G3DSA:3.30.420.10\"[113-281]Tno description


","No hit to the COGs database.","***** PF01836 (Transposase) with a combined E-value of 2.2e-21. PF01836B 103-154 PF01836C 181-190 PF01836D 215-222 PF01836E 253-272","No significant hit to the ProDom database.","","Thu Jun 14 12:02:01 MDT 2001","","Thu Jun 14 12:02:01 MDT 2001","Thu Jun 14 12:02:01 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:02:01 MDT 2001","Thu Jun 14 12:02:01 MDT 2001","","Tue Jun 26 09:06:34 MDT 2001","Fri Feb 9 16:58:13 MST 2001","Tue Jun 26 08:48:45 MDT 2001","Thu Nov 16 11:08:48 MST 2000","Mon Jun 25 17:07:13 MDT 2001","","yes","Fri Feb 20 15:41:32 MST 1998","PG1436 is paralogous to PG1861, PG1491, PG0391, PG0418, PG0007, PG1796, PG0034, PG0533, PG1247 and PG0841, all ISPg5 transposases.","Mon Jun 4 16:10:43 MDT 2001","Mon Jun 4 16:10:43 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 110 to 273 (E-value = 8.9e-31) place PG1436 in the rve family which is described as Integrase core domain (PF00665)","Mon Jun 25 17:07:13 MDT 2001","34541287","","Califano,J.V., Kitten,T., Lewis,J.P., Macrina,F.L., Fleischmann,R.D., Fraser,C.M.,Duncan,M.J. and Dewhirst,F.E. Characterization of Porphyromonas gingivalis insertionsequence-like element ISPg5.Infect. Immun. 68 (9), 5247-5253 (2000)","","Thu Nov 16 11:08:48 MST 2000","","1","","","PG1644" "PG1437","1726155","1725769","387","TTGGGCGGGATGCAACCAGTATCCATTATGGGCAAACATTTAAACAACTTTGAACGCCTTAGCATCCTTGAGGATTACCTCTCGGGGTCAGATAGCAAAGTAGCCATTGAGCAGAAATATGGTCTAAGTCATGGTCTCATTCGCTCTTGGCTTAGTAAATTTGGACTCGAAGATAAAGTTCATCCAGTCCCAATGAAAGTGTCCCAATCCCCCCAGAGTGAGCTACCCCTGAACGAAAAAGAAGAATTAGAGCAGCTACGTAAAGAAAATCGTGTCCTCAAGAGTCGTCTCAAGCGAGAAGAACTAGGGCATCAAGCCTACAAGCTACTTGTAGAGTTGGCAGAAGAAACCTACGGCATTCAGATACGAAAAAACTCCGAAGCCAAG","9.00","1.96","14755","LGGMQPVSIMGKHLNNFERLSILEDYLSGSDSKVAIEQKYGLSHGLIRSWLSKFGLEDKVHPVPMKVSQSPQSELPLNEKEELEQLRKENRVLKSRLKREELGHQAYKLLVELAEETYGIQIRKNSEAK","1726155 1725769","See PG1436 for associated transposase.Member of the IS3 family of insertion elements.TIGR ID: PG1645","ISPg5-related orf-1","Cytoplasm","PG1437 is equivalent to the previously reported gb|AAF69127.1 in GenBANK.Otherwise, no hits in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Fri Feb 9 17:42:39 MST 2001","Fri Feb 9 17:42:39 MST 2001","Fri Feb 9 17:42:39 MST 2001","Tue Dec 19 15:38:02 MST 2000","","","yes","Fri Feb 20 15:41:32 MST 1998","PG1437 is essentially identical to PG1862, PG1797, PG1490, PG0008, PG0033, PG0532, and PG0392, all ORFs associated with ISPg5-related transposases. PG1437 is paralogous to PG1246, PG0840, and PG0419, all ISPg5-related orf-1.","Mon Jun 4 16:23:07 MDT 2001","Mon Jun 4 16:23:07 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jun 4 16:23:07 MDT 2001","34541288","","Califano,J.V., Kitten,T., Lewis,J.P., Macrina,F.L.,Fleischmann,R.D., Fraser,C.M., Duncan,M.J. and Dewhirst,F.E.Characterization of Porphyromonas gingivalis insertionsequence-like element ISPg5.Infect. Immun. 68 (9), 5247-5253 (2000)20407340","","Fri Feb 9 17:42:39 MST 2001","","1","","26","PG1645" "PG1438","1726416","1727834","1419","ATGATTGCACTCTTAATAATCGTATACATGCTGATGACGGCTGCCGTCAGTGCTGTCATTATCAGCGAGAATCGCAATCCACTGAAGGCTACTTCGTGGATTCTGGTCGTCTCTTTTGTACCCGTCTTGGGGCTTATTGTCTATATCTTTTTCGGACAGGATCAGCGCAGACGGCGTATTGTCAGCCGCCGTATATACAAGCGCATCATGCTGAAGCCTCACTATCTGTCCATCCCCGAAGCACAGTTGGAAGCCATGAACAATATCCAGCTGAATCCCATCATGAAGCTGATCAACAACAACTCGGACAGCCCCGTCATGCTCAGCTCGCCGCCGGATATATTCACGGCAGGGAAGGATATGTTCGACTGCTTCTTTCGCGACATAGAGGCTGCCCGCCACCATGTGCATATTCAGTTCTACGTCATAGAGGATGACCATCTGGGCAGTCGCCTGTCCGATCTGCTTATACGCAAGGTGCAAGAGGGCGTGAAGGTGAGGGTCATATTCGATCATGTGGGTTCGTGGGCTACGGGCCGTGGCTACTGGAAACGACTGCGCCGAGCCGGAGTGGAAGCCTATCCTTTTATGCCGGTCTTCTTCCCCATACTGTCCAGCCGCGTAAACTACCGCAATCACCGGAAGGTAGCCGTTATAGATGGTAAAATAGGCTATTTGGGCGGTATGAATGTGGCCGATCGCTATTACTCGGGCAACAGGCTCGGTCTGTGGCGCGATACTCACTTCCGTATGATGGGCAATGTGGTGGCCGGTTTGCAGAGCAGTTTCCTGCTGGACTGGTATGTCGTATCGCGACGAGTCATCAATCTCTCCGGCTACTATCCCGATCTGCCGATACCCGTATCCGACGAGGGTGTGAAGATACAGCTCGTACGCTCCGGCCCCGTGGGGCAATGGCGTACCATCGAGCAGGCCACCATCTACTGTATCGAGCGTGCCTGCGAACATGTCTATATCGAGACTCCTTACTTCCTTCCGACCGAAGGACTGAATAATGCTCTCATCACGGCAGCTTTGGCCGGCATCGATGTACACCTGCTGGTGCCCAAACGAAGCGATGCCCGTCTGCCACAAGTGGCGGCCTTCTCCTATGTGGAGGATCTCTTGCAGGCCGGTGTACATGTACACCTCTATACCAACGGCTTTCTCCATTCCAAGCTGATAATGGTGGATAGTCAGGTGGCTTCGATCGGCTCTACGAATATGGACTTCCGCAGCTTGGAAAATAACTTCGAATTCAATGGTATCATCTATGACGAGCCTACTGTCCACCGATTGGAAGCCATCTTCTTCGAGGACTTGTTGCAGAGCGAACCGCTCGATCTCAAACGCTGGCGAAAGAGAAGCCGGATAAAAAAATTCAGCGAATCCTTTGTTCGCCTTTTCTCTCCTCTGCTC","10.10","13.25","54261","MIALLIIVYMLMTAAVSAVIISENRNPLKATSWILVVSFVPVLGLIVYIFFGQDQRRRRIVSRRIYKRIMLKPHYLSIPEAQLEAMNNIQLNPIMKLINNNSDSPVMLSSPPDIFTAGKDMFDCFFRDIEAARHHVHIQFYVIEDDHLGSRLSDLLIRKVQEGVKVRVIFDHVGSWATGRGYWKRLRRAGVEAYPFMPVFFPILSSRVNYRNHRKVAVIDGKIGYLGGMNVADRYYSGNRLGLWRDTHFRMMGNVVAGLQSSFLLDWYVVSRRVINLSGYYPDLPIPVSDEGVKIQLVRSGPVGQWRTIEQATIYCIERACEHVYIETPYFLPTEGLNNALITAALAGIDVHLLVPKRSDARLPQVAAFSYVEDLLQAGVHVHLYTNGFLHSKLIMVDSQVASIGSTNMDFRSLENNFEFNGIIYDEPTVHRLEAIFFEDLLQSEPLDLKRWRKRSRIKKFSESFVRLFSPLL","1726416 1727834 [Shorter 1852 1404 99]","TIGR ID: PG1647","cardiolipin synthase","Inner membrane, Cytoplasm","Residues 1-473 have 37% similarity to U88888, B. firmus cardiolipin synthase.Residues 1-473 have 35% similarity to P001516, B. halodurans cardiolipin synthetase.Residues 4-473 have 36% similarity to Z99122, B. subtilis protein similar to cardiolipin synthase. This sequence is similar to BT3978.","
InterPro
IPR001736
Domain
Phospholipase D/Transphosphatidylase
PF00614\"[208-235]T\"[386-413]TPLDc
SM00155\"[208-235]T\"[386-413]TPLDc
PS50035\"[208-235]T\"[386-413]TPLD
noIPR
unintegrated
unintegrated
G3DSA:3.30.870.10\"[107-267]T\"[309-451]TG3DSA:3.30.870.10
PIRSF006046\"[1-473]TPLD_CLS


","BeTs to 6 clades of COG1502COG name: Cardiolipin synthase, phoaphatidylserine synthase and related enzymes of the phospholipase D familyFunctional Class: IThe phylogenetic pattern of COG1502 is a---y-vcEB-hUJ----INxNumber of proteins in this genome belonging to this COG is 2","***** PF00614 (Phospholipase D Active site motif) with a combined E-value of 6.7e-06. PF00614A 129-138 PF00614B 391-410","Residues 309-455 are 31% similar to a (TRANSFERASE PROTEIN TRANSMEMBRANE) protein domain (PD007518) which is seen in YBHO_ECOLI.Residues 110-268 are 43% similar to a (TRANSFERASE TRANSMEMBRANE PROTEIN) protein domain (PD007597) which is seen in O66043_BACFI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Fri Feb 23 16:12:56 MST 2001","Sat Jan 3 10:39:00 2004","Fri Feb 23 16:12:56 MST 2001","Fri Feb 23 16:12:56 MST 2001","Fri Feb 23 16:12:56 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Mar 9 15:58:44 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 208 to 235 (E-value = 1e-07) place PG1438 in the PLDc family which is described as Phospholipase D. Active site motif (PF00614)Residues 386 to 413 (E-value = 1e-06) place PG1438 in the PLDc family which is described as Phospholipase D. Active site motif (PF00614)","Sat Jan 3 10:39:00 2004","34541289","","","","","","1","","26","PG1647" "PG1440","1727905","1730142","2238","ATGACAATACACGACAATACTCTTTTCTCCGCCGATGAGCGGAGTCGCTTCCTCTCCTCATACGCGAGTTTGATTCGTACACTAGCTCCCGATCGGCAGCTCGTGAAGAAAGTACGCAGTCTGCTGAGCCGTTTTACGGAGTTGGGATGTTTCGATCGCGACAAAAACGGTATGCACGGACTTTTGCGCAACATGGAAGTGGCACGCATAGCCTCCTGTGAGATCGGGCTGGGGATAGAGGCCATCGGAGCACTCCTCTTCTATCGTCCGGCGATGAAGGGGCTGACGAGACCGGAGGAGATAGCCGAGCTCATGGGCGAAGATGTGGCTCGCCTGATCGACCTCCTGCTGAAAACATCGGAGATCTACATGCGCAATACGGCTATCAATACGGCCAACTTCGAGCACTTCCTCCTCTCCATCGCCGAAGATATTCGCGTGGTGCTGCTCATCATCGCTGACCGTTCCTATCTGCTGCGCCAGGCCAAAGACATGGTCTGTGCCGAAGAGCGTACGGCCCTGGCTGCAGAGGTGTCTTATCTCTATGCTCCGCTGGCACACAGGCTCGGACTCTATGCCATCAAGAGCGAAATGGAAGACCTCTGTCTGAAATATACAGACCGGCAGACTTTCGACTTCATCAAAAGAAAACTCGGAGAGACGAAGCGTAGCCGCGATGCCTATATCGAAGCTTTCATCGCTCCGCTGCGCCGTCGGCTGGACGAAGCTCTGCCCAATATCCCGTACGAGATGAAGGGGCGTACCAAGAGCATCAACAGCATTCGCAACAAGCTTCGTCAGCAGGGTATCGAGTTCGAATCCATATACGATCTTTTTGCCATACGAATCATATTGGATGTGCCCGTGAAAGATGAGAAAGCTGCCTGCTGGCATGTCTATTCCATCATCACGGACATGTATCAGCCCAATCCACAGCGAATGAAGGACTGGATCTCCATCCCCAAAAGCAACGGTTATGAGTCGCTCCACGTTACGGTGATGGGACCGCAGAATCGGTGGGTGGAGGTGCAGATTCGCTCCCGTCGCATGGACGAGGTGGCCGAAAGAGGATTGGCTGCTCACTGGAAGTACAAAGGTATCAAGAGCGAGAGCGGATTGGATGAGTTCCTCACTTCCGTACGCGAGACGCTTGAGGCACGCGATCACTCCTCGGACGATTCGGCGGAGACGGTGAAAAACTTCAAGATGAACCTCTTCACCGATGAGATCTATGCTTTCACTCCCACGGGAGAACTGATCAAGTTGCCTCAGGGAGCCAGTGTGCTGGACTTTGCTTTTGCCATCCATTCGCGCATCGGCTGTCAGGCCGTCGGAGCTAATGTCAATGGAAAGAATGTGCCGCTCAAACATAAGCTCGAAAACGGCGACTCCGTTTCGATCATTACCTCTGCTCAGCAGACCCCGAAGAAGGATTGGCTTTCCTATGTGGTCAGTTCCAAAGCACGCAATAAGATCAAGCAGCAGCTTCGCTTGCAGATGGAAAGCAGTATCGGCGTAGTCAAAGAACTGCTGAACCGCCGTCTGAAGAACCGTAAATTGCCGTTTGAAGAAGCCGTATTCACGCGCGTGGTACGACGCAAGGGGTTCAAGCATCTGACGGATTTCTATATGGAGATAGCGGCCGACAGACTCGATGTGCAGGAGGTACTGGAGCTATACTCTCATGAATTGGAGGAAGAGCAGAGACGCGATGCCGGTTCGGGTGCAGCTCGTCGCAGTGCCGATACCTTTGTGGCGCATCCGCCCAAAGAGGAAGAAATCGTCAAAGGGGGAAAAAGCGACGTATTGGTTATCGACAACAATATGACGGGGGTGGAATACAGCTTTGGCAAATGCTGCAATCCTATTTACGGGGATTCCGTATTCGGATTCGTGAGCAATAGCGGTATCAAGATACACCGCACGGACTGCCCGAATGCGCCGGATATGTTCAGCCGATACGGTTATCGCATCATCGAAGCTCGCTGGAGCGGTAAGGGATCGACCGGATACGAGGCTACACTTCATGTCATAGGACAGGACAATCTGGCCATCGTGACGAACATAACTTCGGTCATCAATAAAGAACCAGGCGTATCGCTCCGAGCCTATTCGATCAATTCGAAGGACAATCTCTTCGAAGGGGTGTTCACGGTCGAAGTACCCGATACCTCGACACTATCCATCCTCCTTCGCAAGATCCGTGCTACGCATGGGGTCAAGTCGGCCGAACGACAT","8.60","10.75","84601","MTIHDNTLFSADERSRFLSSYASLIRTLAPDRQLVKKVRSLLSRFTELGCFDRDKNGMHGLLRNMEVARIASCEIGLGIEAIGALLFYRPAMKGLTRPEEIAELMGEDVARLIDLLLKTSEIYMRNTAINTANFEHFLLSIAEDIRVVLLIIADRSYLLRQAKDMVCAEERTALAAEVSYLYAPLAHRLGLYAIKSEMEDLCLKYTDRQTFDFIKRKLGETKRSRDAYIEAFIAPLRRRLDEALPNIPYEMKGRTKSINSIRNKLRQQGIEFESIYDLFAIRIILDVPVKDEKAACWHVYSIITDMYQPNPQRMKDWISIPKSNGYESLHVTVMGPQNRWVEVQIRSRRMDEVAERGLAAHWKYKGIKSESGLDEFLTSVRETLEARDHSSDDSAETVKNFKMNLFTDEIYAFTPTGELIKLPQGASVLDFAFAIHSRIGCQAVGANVNGKNVPLKHKLENGDSVSIITSAQQTPKKDWLSYVVSSKARNKIKQQLRLQMESSIGVVKELLNRRLKNRKLPFEEAVFTRVVRRKGFKHLTDFYMEIAADRLDVQEVLELYSHELEEEQRRDAGSGAARRSADTFVAHPPKEEEIVKGGKSDVLVIDNNMTGVEYSFGKCCNPIYGDSVFGFVSNSGIKIHRTDCPNAPDMFSRYGYRIIEARWSGKGSTGYEATLHVIGQDNLAIVTNITSVINKEPGVSLRAYSINSKDNLFEGVFTVEVPDTSTLSILLRKIRATHGVKSAERH","1727905 1730142","TIGR ID: PG1648","GTP pyrophosphokinase, (p)ppGpp synthetase","Cytoplasm","Residues 55-745 have 33% similarity to AF025847, M. xanthus (p)ppGpp synthetase.Residues 99-695 have 34% similarity to AF242653, B. stearothermophilus ppGpp synthetase/hydrolase RelA.Residues 55-745 have 31% similarity to AE000710, A. aeolicus (p)ppGpp 3-pyrophosphohydrolase.This sequence is similar to BT0700.","
InterPro
IPR004095
Domain
TGS
PF02824\"[410-469]TTGS
InterPro
IPR007685
Domain
RelA/SpoT
PF04607\"[253-366]TRelA_SpoT
InterPro
IPR012675
Domain
Beta-grasp fold, ferredoxin-type
G3DSA:3.10.20.30\"[409-472]TFerredoxin_fold
InterPro
IPR012676
Domain
TGS-like
SSF81271\"[410-470]TTGS-like
noIPR
unintegrated
unintegrated
PTHR21262\"[131-746]TPTHR21262
SSF109604\"[53-207]TSSF109604
SSF55021\"[667-746]TSSF55021
SSF81301\"[208-386]TSSF81301


","BeTs to 9 clades of COG0317COG name: Guanosine polyphosphate pyrophosphohydrolases/synthetasesFunctional Class: T,KThe phylogenetic pattern of COG0317 is -----qvcEbrHujgpo----Number of proteins in this genome belonging to this COG is 2","***** BP02902 (PPGPP HYDROLASE PROTEIN GTP PYROPHOSPH) with a combined E-value of 3e-45. BP02902A 175-211 BP02902C 306-347 BP02902D 409-448 BP02902B 257-300***** BP02764 (PPGPP HYDROLASE PROTEIN GTP PYROPHOSPH) with a combined E-value of 2e-11. BP02764 338-366","Residues 218-396 are 41% similar to a (HYDROLASE SYNTHETASE PROTEIN PPGPP) protein domain (PD002902) which is seen in O32419_STAAU.Residues 55-187 are 32% similar to a (HYDROLASE PROTEIN SYNTHETASE GTP PYROPHOSPHOKINASE PPGPP) protein domain (PD002764) which is seen in O52177_MYXXA.Residues 405-509 are 50% similar to a (HYDROLASE SYNTHETASE GTP) protein domain (PD002918) which is seen in O52177_MYXXA.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Mar 15 14:57:52 MST 2001","Wed Dec 3 08:58:49 2003","Fri Feb 23 16:41:41 MST 2001","Fri Feb 23 16:41:41 MST 2001","Fri Feb 23 16:41:41 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1440 shows 34% similarity to PG1580, GTP pyrophosphokinase, (p)ppGpp synthetase.","Thu Mar 15 14:57:52 MST 2001","Fri Mar 9 15:46:32 MST 2001","-59% similar to PDB:1VJ7 Crystal structure of the bifunctional catalytic fragment of RelSeq, the RelA/SpoT homolog from Streptococcus equisimilis. (E_value = 4.4E_42);","","","Residues 253 to 369 (E-value = 4.7e-45) place PG1440 in the RelA_SpoT family which is described as Region found in RelA / SpoT proteins (PF04607)Residues 406 to 469 (E-value = 1.5e-24) place PG1440 in the TGS family which is described as TGS domain (PF02824)","Wed Dec 3 08:58:49 2003","34541290","","","","","","1","","26","PG1648" "PG1441","1730469","1733453","2985","ATGAAAAAACTGATATTATCGGCTCTTGTGCTGGGTGGAGCAATGACTTTCACGGCACAAGCCCAAAATAAAGCGGCAGAGCCCGCCGAAGAGTTTTTCCTCGAAGGGAGAGCGATGTTTATCCGCCAAAATTATGTGGGTGCCTTAGACCAATTCCGTCTCTATCGCTTGCACGTAGGGCAAGAGCACGCTTTGGAGGTGGATTATTATAGTATCATCGCGGACTATCTATTGGGAGCGGATCACGATTACGTCCTCAGCGCGGTAGGCAATTTCTTGGACAATTTCCCCGAATCGATCGACAAATCCCGTGTGCGACTCCTCACAGGGGAGCTGATGATCCGGCATGAACAGTATTTGCGTGCCAATACCATTTTCTCCGACATCGACGATCGCACGCTCAACGATGAAGACTTGGCTGCATACCTGCTTTATTATGCATACGTGCGTATGCAGTTGAGCGAGAGCAATGCTTTGGCCGAGCAGATGCTGCTGAAGGCTTCCGAGAGCAGAGGTGAGCTGGGCGGACGTGCTTGTCTCCTCCTTGCTGCTATCCAAATAGAGGATGGCCGAATCGACGAAGCCGAACAGACTCTTTCGCGACTGAAGAATCGCCCGCAATTTGCGGATGAAGCCGATGCTTATATCGCGGAAATCCAACTGTTGCGAGGCGACTACCGCGAAGCGGCCGAAATAGCCGACAGACTCTTGTCGCGCAATTCGCCCATGAGACAGCGACCTCAACTCCTGCGTGTGGCAGGCAATGCTTACTACCGTTTGGGCGATTCGAACAAAACCATCGACTATCTTTCCGACTACAGCGAAAAGGTGGGGGATCGTATCGCGCCTGCCGATGCTTATGCACTTGGTGTCACTTACTATAAGCAAGGTCTGATGAAAGAAGCACTTCGGCCACTTGCCGCTGCTACCACTGACGCCGGTTCTCTCGGTGCAGAGTCGGCTCTCTATCTCGGACAGGCACAGCTGGCCGAGGGTATGACGAGCGAGGCCCTTATGGCTTTCGAGAAGGCTGCGACTCAGGACGTCAATCGGCCGGTACGGGAGGTCGGAATGTACAATATGGCTATGCTCATGCGTAGTACGGGACAGTCGAGCTTCGGTCAGTCCGTACGCATTGCGGAGAACTTCCTCAATGAGTTTCCCCGATCTTCCCACCGCGAACAGATGGCTGCTATTCTCGTCGAATCATATTTCACCGGCAAGGATTACAATTCTTCCCTTAGATCGATCCAAAAGATTGCACAGCCGACGGCTTCCATTCTGGCCGCCAAACAGTTTGTGCTGAACCGTATGGCAGAACAAAAGGAAGCAGCGGGCTATGACAGTGAAGCACTTTCTTTTGTGTCGAGCAGTATATCTATGGGAAACAAAGGGGAATATTTCCCTGAAGCATATTTCCTCCGAGGCAATCTGCGGTATAGAGCCGGTGACTTTCCGACTGCAGCTGCGGATTACAGAGCCTATATCTCGGCCGCCGGTGATCGTGATGCGGCGAATCTTCCTTTAGGATATTATCGTCTGGGCTATTCTCTATTCAATGCCGAACGTTACGATATGGCTTTGGAGGCCTTCAAAGAGTATGTATCCCGATCCGGTATTGCCCCGAATCTCTCGGCTGATGCCTATGCCCGTATCGGAGACTGTAGGTATATGAAGCGCGACTTCCACGGTGCACGCGAAGCCTATTCCATGGCttaCCGCGTCTATCCTTCCGGAGGTGATTATGCCCTTTTGCGTCGTGCTCGGTTGGAGGGACTGGCCAAACAGTATGCCGATCAGATCCAAACGTTGGACAAGCTCATTCGGGAATTCCCCGATAGCCGCCATCTGACAGCTGCTCTCTATGAAAAGGGGTGTGGTGCAGTGCTTAGCGGTAAGCATAACGTGGCAGAAGAAGCTTTCAATGCAGTTGTCAAAAGAAGCCCCGACAGCCGTGAAGCCCGACAGTCGTCCTTGCAGTTGGGTCTGCTCTATTATAATACGGGTCGAACGAAAGAGGCTATTCGCACATACCAACGGATCATTGACCGCTACCCTCGTAGCGAAGAGACGACTGTAGCCCTCTCGGATCTCCGTTCTATCTATCTGGAAGAGGATCGGATAGATGAGTATTCTACCTATGTGCGTGGTCTGAAAGATAAGGTGTCCATTGCCCCATCCGAGACGGAACAGCTCGGTTTCCTTTCGGCCGAGCGCAAGTATCGCCGTCGCCAGCCCGATGCTCGTCGAGATTTGGAGGCTTATCTGGAGCGCTATCCACAGGGAAGCGATCGTCACAAAGCAGAATTGTATTTGGCCGATCTCGATTATCAGGCCGGCAATGCTGATGCGGCTTACAATCGTTATTCACGGTTGGTGAACAGCCCCGGTTTGCCCGAAGACTATAAGATCGATGCTCGCCTGCGTCTCGGTCGTATGCAATACGAACGCAAAGAGTACAAGGCTGCGCTGCAATCATTCCAATCCGTACTCGATACGGATGGTGCCGAAGCTGTCCGCGATCAGGCGGTGCAGGGAGTAACCGAGTCTGCCTATGCCGATAAGGATTACCGGAGGGTGATCGACGTAATTGCCGGATTGAAGAATCAGGCAGCTCTGCCTCATACTCTTCGTCTCTATCGTGCCAAAAGTTATCAGGCTCTGAAGATGAATCGGGAAGCGATTGCCGACTATGAACTCCTTGCCGAGGATTTCTCAACGGCCACAGGTGCCGAAGCCGTCGTGATGCAGGCACAGCTGGAAATGGAAGCCAAGCGTTTGTCCAAGGCGAAGTCTATCCTCGAAAAATTTATTGCCAAGAGTACTCCTCAGCAGTATTGGTTGGCACGAGGTTTCATCCTCTTGTCCGATATTTATAAGAAAGAAGGGGATACGTTTACGGCAAGGCAGTATTTGGAAAGCTTGGAAAAGAACTATCCTAATCATGAGGATGACATTCACGAACAGATAGCCCAACGGCTTGAA","5.80","-10.11","112478","MKKLILSALVLGGAMTFTAQAQNKAAEPAEEFFLEGRAMFIRQNYVGALDQFRLYRLHVGQEHALEVDYYSIIADYLLGADHDYVLSAVGNFLDNFPESIDKSRVRLLTGELMIRHEQYLRANTIFSDIDDRTLNDEDLAAYLLYYAYVRMQLSESNALAEQMLLKASESRGELGGRACLLLAAIQIEDGRIDEAEQTLSRLKNRPQFADEADAYIAEIQLLRGDYREAAEIADRLLSRNSPMRQRPQLLRVAGNAYYRLGDSNKTIDYLSDYSEKVGDRIAPADAYALGVTYYKQGLMKEALRPLAAATTDAGSLGAESALYLGQAQLAEGMTSEALMAFEKAATQDVNRPVREVGMYNMAMLMRSTGQSSFGQSVRIAENFLNEFPRSSHREQMAAILVESYFTGKDYNSSLRSIQKIAQPTASILAAKQFVLNRMAEQKEAAGYDSEALSFVSSSISMGNKGEYFPEAYFLRGNLRYRAGDFPTAAADYRAYISAAGDRDAANLPLGYYRLGYSLFNAERYDMALEAFKEYVSRSGIAPNLSADAYARIGDCRYMKRDFHGAREAYSMAYRVYPSGGDYALLRRARLEGLAKQYADQIQTLDKLIREFPDSRHLTAALYEKGCGAVLSGKHNVAEEAFNAVVKRSPDSREARQSSLQLGLLYYNTGRTKEAIRTYQRIIDRYPRSEETTVALSDLRSIYLEEDRIDEYSTYVRGLKDKVSIAPSETEQLGFLSAERKYRRRQPDARRDLEAYLERYPQGSDRHKAELYLADLDYQAGNADAAYNRYSRLVNSPGLPEDYKIDARLRLGRMQYERKEYKAALQSFQSVLDTDGAEAVRDQAVQGVTESAYADKDYRRVIDVIAGLKNQAALPHTLRLYRAKSYQALKMNREAIADYELLAEDFSTATGAEAVVMQAQLEMEAKRLSKAKSILEKFIAKSTPQQYWLARGFILLSDIYKKEGDTFTARQYLESLEKNYPNHEDDIHEQIAQRLE","1730469 1733453","TIGR ID: PG1651","conserved hypothetical protein (possible TPR-repeat protein)","Outer membrane, Periplasm, Cytoplasm, Extracellular","No significant hit found in gapped BLAST with E value less than e-04 other than a strong similarity to BT2816.","
InterPro
IPR001440
Repeat
Tetratricopeptide TPR_1
PF00515\"[318-351]T\"[508-541]T\"[546-579]T\"[804-837]TTPR_1
InterPro
IPR011717
Repeat
Tetratricopeptide TPR_4
PF07721\"[176-201]TTPR_4
InterPro
IPR011990
Domain
Tetratricopeptide-like helical
G3DSA:1.25.40.10\"[136-368]T\"[469-687]TTPR-like_helical
InterPro
IPR013026
Domain
Tetratricopeptide region
SM00028\"[318-351]T\"[469-502]T\"[508-541]T\"[546-579]T\"[618-651]T\"[655-688]T\"[804-837]TTPR
PS50005\"[318-351]T\"[469-502]T\"[508-541]T\"[546-579]T\"[618-651]T\"[655-688]T\"[804-837]T\"[949-982]TTPR
PS50293\"[176-837]TTPR_REGION
InterPro
IPR013105
Repeat
Tetratricopeptide TPR_2
PF07719\"[469-502]T\"[655-688]TTPR_2
noIPR
unintegrated
unintegrated
SSF48439\"[623-994]TPrenyl_trans
SSF48452\"[318-704]TSSF48452
SSF81901\"[28-353]TSSF81901


","BeTs to 10 clades of COG0457COG name: TPR-repeat-containing proteinsFunctional Class: RThe phylogenetic pattern of COG0457 is AMTKYQVCEB-HUJ--OLINXNumber of proteins in this genome belonging to this COG is 21","No significant hit to the Blocks database.","Residues 602-831 are 23% similar to a (PROTEIN REPEAT TPR DOMAIN NUCLEAR PUTATIVE RECEPTOR) protein domain (PD000069) which is seen in O83920_TREPA.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Fri Dec 19 10:15:04 2003","Fri Dec 19 10:15:04 2003","Fri Feb 23 16:42:56 MST 2001","","Fri Feb 23 16:42:56 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Dec 19 10:15:04 2003","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Fri Feb 23 16:42:56 MST 2001","34541292","","","","","","1","","26","PG1651" "PG1442","1733483","1735270","1788","TTGGAAATAATGAACAGCATCATGAAATATCAATTATATACGGCCGTCATAATGGCTCTCTCTGTATCATCCGTTTGCGGTCAAACCCCACGAAATACAGAAACCAAACGCCCCGACACGCTGCGCAGGGAGCTTACTATCGTTAATGACCAGACTGTGGAGATGGAGCATGCGGATCCGCTTCCGGCTGCATACAAGGCCATCGAACCTCGATTAAAACCTTTCCGTCCGGAATATAACAAGCGTACATTCGGATTTGTCCCTGAAGTTTCCTCTTCAGGCAGGAACAATCTTCCGAATATCCTGCCGACGGAAGGTCATATGAAGCACCGGGGGTACCTGAATATCGGTATCGGCCATACGCTAAACCAGCGAATGGATGCCGGCTATCGTCTGATAGATGCAGAGCAGGAGAGACTGAATCTTTTCCTCTCCTATCGTGGGATGAAATCGGCTTTCAATACCGGTGACTTCGACGGCGACAGAAAGGATAGACGAATGATGGCAGGAGTGGACTACGAGCAGCGCAGGCCTTCCTTTGTGCTTGCTACCGGCTTGTATTATTCGAACCATTATTTCAATAACTACGGACGGGGAGCTACCACCAATGTGGGCAGCATCCCTCAGCTATCGACACCTGTTACTCCTCAGATGGACAACGGGACCCACAACGTCCGTGTATACTTGGGTGCAAAAAATGATGTGATCGATGCCAGGATCGACTATCGTTTCTTCCGTTCTATTCCCTATCTGGGTACCGATCCGATGAAGGCTCTCACAGAACATACGCCTGAACTGAACGTGACGATGAGTAATGAGTTGTCCGATGATATTAAGCTCGGTGTCGAAGTTCGTACGGGAGGATTGTTTTTTGCCAAAAACAGCGAAATGATTCAAACGGGCGTTCTGTCCGAAACCGACCGCAACCTGTATTATGTGGAGGGCGCGCCCACAATCGGATTTGTCGGAGACTCGGACAATATGCAATGGAACATACAGGCCGGAGTAGGGATTTCTTCCCATTTCGGAGCCAAAGGGAGGTTGTTTTTCTGGCCTAAACTGGATGCTTCGCTTAGTATCTTCCCTTCATGGCGTGTGTATGCGAAAGCCTTCGGCGGTGTGATTCGAAATGGTCTCGCCGATGTTATGCAAGAGGAGATGCCCTACCTGATGCCCAATACGATTGTACTCCCTTCGCGCAATGCTTTGACCGCCCAATTAGGGGTGAAGGGGAATATAGCCGATGTGGTACGTATGGAGGTTTATGGCGACTTCTCCAAGCTGACAGGTGTGCCTTTCTATACTCCGACTCTACCCTTATATAATCCATCCGACTTGTATCAGTATAATGTGAGTTTCTTGCCGATATATGCCGACGGCAGCCGCTGGCGCGCAGGTGGTAAGCTGGAATACTCTTATCGCGATATGCTCCGCTTTCTGGTAGACGCATCCTATGGCAAGTGGAATTTGGATGGAGGACTTGTCGCCTCCATGCAGCCCGATCTTATATTGAAGGCAGAAGTAGGTGTTCATCCCATTGCCCCATTGGATGTCAGACTCCGGTATACACAGCTGAACGGACGGTATCGGTATTCTTTCGGCTCGGCTGGCTCGGAAGCCTTGGGTATCGGTAATGTACATCTTCTTAGTGCGGATGTTTCATACAAGCTGAAAAAGAACTTGAGCCTTTATCTCAAAATCGATAATATGCTGGCGGAAACGACAGAGCTTATCGGTTATTATCCTATGCAGCCGTTCCATTGTTTCGCCGGTTTTAGCTGGACTTTC","8.60","4.59","67071","LEIMNSIMKYQLYTAVIMALSVSSVCGQTPRNTETKRPDTLRRELTIVNDQTVEMEHADPLPAAYKAIEPRLKPFRPEYNKRTFGFVPEVSSSGRNNLPNILPTEGHMKHRGYLNIGIGHTLNQRMDAGYRLIDAEQERLNLFLSYRGMKSAFNTGDFDGDRKDRRMMAGVDYEQRRPSFVLATGLYYSNHYFNNYGRGATTNVGSIPQLSTPVTPQMDNGTHNVRVYLGAKNDVIDARIDYRFFRSIPYLGTDPMKALTEHTPELNVTMSNELSDDIKLGVEVRTGGLFFAKNSEMIQTGVLSETDRNLYYVEGAPTIGFVGDSDNMQWNIQAGVGISSHFGAKGRLFFWPKLDASLSIFPSWRVYAKAFGGVIRNGLADVMQEEMPYLMPNTIVLPSRNALTAQLGVKGNIADVVRMEVYGDFSKLTGVPFYTPTLPLYNPSDLYQYNVSFLPIYADGSRWRAGGKLEYSYRDMLRFLVDASYGKWNLDGGLVASMQPDLILKAEVGVHPIAPLDVRLRYTQLNGRYRYSFGSAGSEALGIGNVHLLSADVSYKLKKNLSLYLKIDNMLAETTELIGYYPMQPFHCFAGFSWTF","1733483 1735270","Veith et al. (2002) identified this protein by two-dimensional gel electrophoresis and peptide mass fingerprinting of outer membranes prepared from strain W50. This protein is strongly predicted by PSORT to be located in the outer membrane. The presence of few Cys residues and C-terminal phenylalanine support this conclusion.TIGR ID: PG1652","probable integral outer membrane protein P64","Outer membrane, Cytoplasm","No hit found in gapped BLAST.","
InterPro
IPR000531
Domain
TonB-dependent receptor
PF00593\"[351-596]TTonB_dep_Rec
InterPro
IPR013166
Domain
Citrate lyase ligase, C-terminal
SM00764\"[204-310]Tno description
noIPR
unintegrated
unintegrated
G3DSA:2.40.170.20\"[460-596]Tno description
signalp\"[1-27]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Thu Feb 7 17:39:22 2002","Mon Feb 11 12:26:59 2002","","Thu Feb 7 17:39:22 2002","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Feb 7 17:39:22 2002","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Feb 7 17:39:22 2002","34541293","","Veith,P., Talbo,G., Slakeski,N., Dashper,S., Moore,C.,Paolini,R., Reynolds,E., Major outer membrane proteins and proteolytic processing of RgpA, and Kgp of Porphyromonas gingivalis W50, Biochem J. 2002 (in press).","","Thu Feb 7 17:39:22 2002","","1","","26","PG1652" "PG1443","1735298","1736518","1221","ATGAAGTATAAAATCATAGTCATAGATGTATTCAACACCCTGCTCAATAACAAGTATGAGCTGACGGAAGAGAACCGCAATGCACTCCTCTATATCCAGAAAGAACTGGGGATCCGTGTCGTACTCACTTCCGGTCGTACTGTGGCGGCACTGAAGCCACTCGCAGAGGAGTTGAATCTTAGGGAATATAGCGGCTATCTCATCCCTTATCACGGAGGACAGATCGTGAACTGTCGCTCGGGCAAAGTCATCGCTTCGCACCGGATGGCTACCTCTTTTGTCGAGGTGTTGGACGCTCGTGCCCGGGCCGAAGGTGTTACCTTGTTGGCATTCGGCAAGGATTCCATATTCTCCACCGATCCCCATGATCCCCTTGCAGTGAAAGAATCGGATATTTGTGGCCAGCCGCTTGTATCCAAACATCCTCGTTCTTCGGAGGTGATCAAGTGTTCTTTTGTCGGTGAGGCAGAGAAAATCGCAGAGCTGGAGGTCGTGATGCGGCGCGACTATGGAGACAAATTGAATATATTCCGCTCTTCTGAAACGCTGCTTGAGTGCCTTCCGTCCGAGGTGCAGAAGATAAAAGCCATATCCGACCTCTTGGACAAGCTGGATTTGTCACGAGAGGAACTTGTTTCGGTCGGAGACAGCTACTGCGATGTGGAGATGATCCAACTGGCCGGCTTGGGTGTGGCCGTGGCGAATGCTCGGGAAGCCGTCAAAGCCTGTGCCGACTATATTACGACGAGCAACGAGGAGAACGGTGTCGCCCACTTGGTGGACAAGTATATCCGACACGAATATGAAGCCGTTCCTTTCTCCGTAGAAGATGTCAATAGTATTGTGCCGGGTACGCTCATGGAGAGCCTTGGTATTCGCTGCACCAAGATCGCGCGTGGCTATGTCGAGGCAACGATGCCGGTGGATATTCGCACTCGTCAGCCTATGGGTATTTTGCATGGAGGAGCCAGCTTGGCTTTTGCAGAGACCCTGGCCGGATTCGGTTCCGTGGCACTCTGCAATCCGGGAGAGATACAGGTGGGATTGCAGGTGAGTGGCAACCACGTCTCTTCGGCTCTTGAAGGCGATGTGCTTCGGGGCGAAGCCTCCATTATGCATCAAGGACGCAGCACACACGTATGGAGTATCAATATCTATTCGACCAAGAGCGGCAAGCTGATTTGCACCTGTCGCGTGTTGAACTCCATCCTGAAACAGCGG","6.20","-5.03","44547","MKYKIIVIDVFNTLLNNKYELTEENRNALLYIQKELGIRVVLTSGRTVAALKPLAEELNLREYSGYLIPYHGGQIVNCRSGKVIASHRMATSFVEVLDARARAEGVTLLAFGKDSIFSTDPHDPLAVKESDICGQPLVSKHPRSSEVIKCSFVGEAEKIAELEVVMRRDYGDKLNIFRSSETLLECLPSEVQKIKAISDLLDKLDLSREELVSVGDSYCDVEMIQLAGLGVAVANAREAVKACADYITTSNEENGVAHLVDKYIRHEYEAVPFSVEDVNSIVPGTLMESLGIRCTKIARGYVEATMPVDIRTRQPMGILHGGASLAFAETLAGFGSVALCNPGEIQVGLQVSGNHVSSALEGDVLRGEASIMHQGRSTHVWSINIYSTKSGKLICTCRVLNSILKQR","1735298 1736518","TIGR ID: PG1653","conserved hypothetical protein","Cytoplasm","Residues 3-264 have 29% similarity to D45912, B. subtilis conserved hypothetical protein yxeH.Residues 3-263 have 28% similarity to AE004216, V.cholerae conserved hypothetical protein.Residues 1-264 have 27% similarity to AE005600, E. coli hypothetical protein.","
InterPro
IPR000150
Family
Cof protein
TIGR00099\"[5-260]TCof-subfamily
InterPro
IPR003736
Domain
Phenylacetic acid degradation-related protein
TIGR00369\"[285-403]Tunchar_dom_1
InterPro
IPR006379
Family
HAD-superfamily hydrolase, subfamily IIB
TIGR01484\"[5-233]THAD-SF-IIB
InterPro
IPR006683
Domain
Thioesterase superfamily
PF03061\"[316-394]T4HBT
InterPro
IPR013200
Domain
HAD superfamily hydrolase-like, type 3
PF08282\"[6-260]THydrolase_3
noIPR
unintegrated
unintegrated
G3DSA:3.10.129.10\"[282-404]TG3DSA:3.10.129.10
G3DSA:3.40.50.1000\"[2-276]TG3DSA:3.40.50.1000
SSF54637\"[266-405]TSSF54637
SSF56784\"[1-269]TSSF56784


","BeTs to 12 clades of COG0561COG name: Predicted hydrolases of the HAD superfamilyFunctional Class: RThe phylogenetic pattern of COG0561 is a-tky-vCEBrH--GPOlin-Number of proteins in this genome belonging to this COG is 1","***** IPB000150 (Hypothetical cof family) with a combined E-value of 1.7e-11. IPB000150A 9-24 IPB000150B 33-53 IPB000150E 212-236","Residues 285-378 are 44% similar to a (PROTEIN OF SECTION PLASMID) protein domain (PD009337) which is seen in O85402_COXBU.Residues 171-260 are 40% similar to a (PROTEIN PHOSPHOSERINE PHOSPHATASE HYDROLASE INTERGENIC) protein domain (PD001342) which is seen in O82310_ARATH.Residues 4-75 are 41% similar to a (PROTEIN INTERGENIC REGION CONSERVED) protein domain (PD002063) which is seen in YXEH_BACSU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Fri Feb 23 17:00:48 MST 2001","Fri Feb 23 17:00:48 MST 2001","Fri Feb 23 17:00:48 MST 2001","Fri Feb 23 17:00:48 MST 2001","Fri Feb 23 17:00:48 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","-51% similar to PDB:1RKQ Crystal structure of NYSGRC target T1436: A Hypothetical protein yidA. (E_value = 7.5E_27);-63% similar to PDB:1VH5 Crystal structure of a putative thioesterase (E_value = 2.1E_21);-63% similar to PDB:1VI8 Crystal structure of a putative thioesterase (E_value = 2.1E_21);-63% similar to PDB:1SBK X-RAY STRUCTURE OF YDII_ECOLI NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET ER29. (E_value = 2.8E_21);-51% similar to PDB:1NF2 X-ray crystal structure of TM0651 from Thermotoga maritima (E_value = 4.0E_20);","","","Residues 316 to 395 (E-value = 6.4e-13) place PG1443 in the 4HBT family which is described as Thioesterase superfamily (PF03061)","Fri Feb 23 17:00:48 MST 2001","34541294","","","","","","1","","26","PG1653" "PG1444","1736601","1737221","621","ATGCTCTGTGCGCAGACTTTCTCTGAAGAAGATTTCCGCATACGAGGCTACGTCGATATTCACCGTCTCGACACTACGATTCGTCTCGCTCTCATTTATTCCACGACGGACAACTTCGTGGGCGAAGATATGTACGGCGACTTCGATAAAGCCTATTTCGAAAAGGGCTTTGCCGAACGCATCCATCAAGCGCAGCGACTGCTACGCAAAGAACACCCGGACTATTCTCTACTCATCTACGACGCATCCCGTCCCATCAGCATACAGAGGCGTATGTACACCCTCGTGAAGGGAACTTCCAAGGCTGTCTATGTAGCCAACGGAAACAGAGGAGGGAAGCATAACTACGGAGTCGCTGTAGATCTTACCATCGTGGATCGTGATGGAAAACCGTTGGATATGGGCACTCCTGTCGATCACTTTGGCCGAGCGGCACATGTGGGTCAGGAAGAACGCTTGGCCGCAGACGGCCTGATCAGCCGAGAGGCTGTCCGGAACCGCCGGTTGCTACGTCGCATAATGAAGTCGGTCGGGCTGGTACCCTATCGCAGGGAGTGGTGGCATTACGAACTGCCGGAGAGCATGAGCCACACCCGCTCACATTATCGCTTGCTCGACTTT","9.90","6.12","24097","MLCAQTFSEEDFRIRGYVDIHRLDTTIRLALIYSTTDNFVGEDMYGDFDKAYFEKGFAERIHQAQRLLRKEHPDYSLLIYDASRPISIQRRMYTLVKGTSKAVYVANGNRGGKHNYGVAVDLTIVDRDGKPLDMGTPVDHFGRAAHVGQEERLAADGLISREAVRNRRLLRRIMKSVGLVPYRREWWHYELPESMSHTRSHYRLLDF","1736553 1737221","From GenBANK gi:13878463:In E. coli, VanX hydrolyzes D-ala-D-ala and may have a role in cell-wall turnover. It is metal-activated and belongs to the peptidase family M45.From PubMed: 9751644:Vancomycin-resistant enterococci are pathogenic bacteria that have altered cell-wall peptidoglycan termini (D-alanyl-D-lactate [D-Ala-D-lactate] instead of D-alanyl-D-alanine [D-Ala-D-Ala]), which results in a 1000-fold decreased affinity for binding vancomycin. The metallodipeptidase VanX (EntVanX) is key enzyme in antibiotic resistance as it reduces the cellular pool of the D-Ala-D-Ala dipeptide. The key residues of the EntVanX active site are strongly conserved in the VanX homologs, suggesting their active-site topologies are similar. StoVanX is a highly efficient D-Ala-D-Ala dipeptidase; its gene is located in a vanHAX operon, consistent with a vancomycin-immunity function. StoVanX is a potential source for the VanX found in gram-positive enterococci. The catalytic efficiencies of D-Ala-D-Ala hydrolysis for EcoVanX and SynVanX are 25-fold lower than for EntVanX, suggesting they have a role in cell-wall turnover. Clustered with the ecovanX gene is a putative dipeptide permease system that imports D-Ala-D-Ala into the cell. The combined action of EcoVanX and the permease could permit the use of D-Ala-D-Ala as a bacterial energy source under starvation conditions.TIGR ID: PG1654","possible D-alanyl-D-alanine dipeptidase (possible D-,D-dipeptidase) (possible vancomycin resistance protein VanX)","Cytoplasm","Several weak significant hits using gapped BLAST to D-alanyl-D-alanine dipeptidases. Residues 18-190 are 33% similar to (AE005897) of Caulobacter crescentus. Residues 18-197 have 31% similarity to D90791, E. coli. Residues 10-192 are 31% similar to (AE006975) of Mycobacterium tuberculosis. Also shows similarity to several hypothetical proteins.","
InterPro
IPR000755
Family
Peptidase M15D, vanX D-ala-D-ala dipeptidase
PD013478\"[114-189]TPeptidase_M15D
PF01427\"[13-207]TPeptidase_M15
InterPro
IPR009045
Domain
Hedgehog/DD-peptidase, zinc-binding motif
SSF55166\"[13-193]THedgehog_sig_N
noIPR
unintegrated
unintegrated
G3DSA:3.30.1380.10\"[13-193]TG3DSA:3.30.1380.10
PIRSF026671\"[1-203]TAA_dipeptidase


","BeTs to 3 clades of COG2173COG name: D-alanyl-D-alanine dipeptidaseFunctional Class: MThe phylogenetic pattern of COG2173 is -------ce-r----------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 18-192 are 28% similar to a (PROTEIN DIPEPTIDASE OF D-ALANYL-D-ALANINE) protein domain (PD013478) which is seen in O53850_MYCTU.","","Thu Jun 14 12:02:12 MDT 2001","","Thu Jun 14 12:02:12 MDT 2001","Thu Jun 14 12:02:12 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:02:12 MDT 2001","Thu Jun 14 12:02:12 MDT 2001","","Tue Jun 26 09:20:28 MDT 2001","Tue Jun 26 09:20:28 MDT 2001","Tue Jun 26 09:20:28 MDT 2001","Fri Feb 23 16:52:21 MST 2001","","Tue Jun 26 09:20:28 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue May 15 12:13:14 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 13 to 207 (E-value = 7.8e-14) place PG1444 in the Peptidase_M15 family which is described as D-ala-D-ala dipeptidase (PF01427)","Tue Jun 26 09:20:28 MDT 2001","34541295","","","Lessard,I.A., Pratt,S.D., McCafferty,D.G., Bussiere,D.E., Hutchins,C., Wanner,B.L., Katz,L. and Walsh,C.T. Homologs of the vancomycin resistance D-Ala-D-Ala dipeptidase VanX in Streptomyces toyocaensis, Escherichia coli and Synechocystis: attributes of catalytic efficiency, stereoselectivity and regulation with implications for function. Chem. Biol. 5 (9), 489-504 (1998) PubMed: 9751644.","","Tue Jun 26 09:20:28 MDT 2001","1","","26","PG1654" "PG1445","1737602","1739455","1854","ATGGCAAAAGAAAAAGAAAAGCTCTTTTCCGAATTCCCTCCGGTTTCGAGAGAAGCCTGGATCGATAAGATAACGGCCGATCTCAAGGGGGTTCCCTTTGAGAAGAAGCTTGTCTGGCGGACGAACGAGGGCTTTAATGTCAATCCGTTTTATCGCAGAGAGGACATCGAGGATCTGAAGACAACGACTTCTCTTCCTGACGAATACCCTTATGTGCGATCCACCCGAATGCACAACGAATGGCTCGTACGCCAAGACATCGTTGTCGGGGATAATGTGGCAGAAGCCAATGAGAAAGCCCTTGACCTGCTCAACAAGGGTGTGGACTCGTTGGGTTTCTACCTGAAAAAGGTTCATATCAATGTAGATACATTGGCTGCTTTGCTGAAAGACATAGAACTGACAGCCGTGGAATTGAATTTCAACTGTTGTATCACACGTGCCGCAGACCTGCTGTCAGCATTCTCTGCATATGTCAAAAAGGTTGGTGCCGATCCGAATAAATGTCATGGTTCGGTCAGCTACGACCCGTTCAAAAAGCAGCTCGTCCGCGGCGTATCCAATCCCGATTGGGTGAAGATGACACTCCCCGTCATGGATGCTGCACGCGAACTGCCTGCTTTCCGGGTGCTCAATGTAAATGCCGTGAATCTGTCCGATGCCGGCGCATTCATTACCCAAGAGCTGGGATATGCTTTGGCTTGGGGCGCAGAGCTGTTGGACAAGCTGACCGATGCCGGCTACAAGCCGGAGGAAATCGCTTCACGTATCAAGTTCAACTTCGGTATAGGATCCAACTACTTCATGGAGATAGCCAAGTTCCGTGCCGCTCGCTGGCTGTGGGCTCAGATCGTGGGCTCGTATGGCGATCAGTACAAGAACGAAACGGCCAAGATCCACCAGCATGCTACGACGTCCATGTGGAACAAGACCGTTTTCGATGCACACGTAAACCTCCTGCGCACACAGACCGAAACCATGTCTGCAGCGATAGCCGGAGTGGACTCCATAACCGTATTGCCTTTCGATGTCACCTATCAGCAGAGCGATGACTTCTCGGAGCGTATCGCTCGCAACCAGCAGCTTTTGCTCAAAGAGGAATGCCACTTCGACAAGGTTATCGACCCTTCGGCCGGATCTTATTATATCGAGACGCTGACCAACTCCATTGGAGAGGAAGCGTGGAAGCTGTTCCTCTCCGTAGAGGATGCGGGCGGTTTCACTCAGGCTGCTGAGACAGCAAGCATTCAGAAGGCTGTCAATGCAAGCAATATCAAACGCCACCAGTCGGTGGCGACTCGCCGCGAGATCTTCCTCGGGACCAACCAGTTCCCCAATTTCACGGAAGTTGCCGGCGACAAGATCACTCTTGCTCAGGGAGAGCATGACTGTAACTGTGTCAAATCCATCGAACCCCTGAACTTCAGTCGAGGAGCATCCGAATTCGAAGCTCTCCGTCTCGCAACGGAAAAGAGCGGCAAAACGCCCGTCGTCTTCATGCTCACTATCGGCAATCTGGCCATGCGTCTGGCACGCTCTCAGTTCTCAAGCAACTTCTTCGGCTGTGCCGGCTACAAGCTGATCGACAATTTGGGCTTTAAGTCCGTGGAGGAAGGTGTGGATGCGGCATTGGCAGCAAAAGCCGATATCGTGGTGCTCTGCTCCAGTGACGATGAATATGCCGAGTACGCTCCGGCTGCATTCGACTATCTTGCCGGCCGTGCCGAGTTCGTAGTGGCCGGTGCACCGGCTTGTATGGCGGATCTTGAGGCCAAAGGCATCCGGAATTATGTGCATGTGAAGTCCAATGTCCTCGAAACGCTTCGTGCCTTCAACGACAAATTCGGTATTCGG","5.40","-10.95","68730","MAKEKEKLFSEFPPVSREAWIDKITADLKGVPFEKKLVWRTNEGFNVNPFYRREDIEDLKTTTSLPDEYPYVRSTRMHNEWLVRQDIVVGDNVAEANEKALDLLNKGVDSLGFYLKKVHINVDTLAALLKDIELTAVELNFNCCITRAADLLSAFSAYVKKVGADPNKCHGSVSYDPFKKQLVRGVSNPDWVKMTLPVMDAARELPAFRVLNVNAVNLSDAGAFITQELGYALAWGAELLDKLTDAGYKPEEIASRIKFNFGIGSNYFMEIAKFRAARWLWAQIVGSYGDQYKNETAKIHQHATTSMWNKTVFDAHVNLLRTQTETMSAAIAGVDSITVLPFDVTYQQSDDFSERIARNQQLLLKEECHFDKVIDPSAGSYYIETLTNSIGEEAWKLFLSVEDAGGFTQAAETASIQKAVNASNIKRHQSVATRREIFLGTNQFPNFTEVAGDKITLAQGEHDCNCVKSIEPLNFSRGASEFEALRLATEKSGKTPVVFMLTIGNLAMRLARSQFSSNFFGCAGYKLIDNLGFKSVEEGVDAALAAKADIVVLCSSDDEYAEYAPAAFDYLAGRAEFVVAGAPACMADLEAKGIRNYVHVKSNVLETLRAFNDKFGIR","1737602 1739455","The beta subunit is immediately downstream at PG1446.TIGR ID: PG1656","methylmalonyl-CoA mutase alpha subunit","Cytoplasm","PG1445 is essentially identical to a previously sequenced P.gingivalis protein in GenBank, AAB51083.Numerous significant hits to methylmalonyl-CoA mutase proteins in gapped BLAST; e.g. residues 8-617 are 26% similar to dbj|BAB06675.1| methylmalonyl-CoA mutase beta subunit of Bacillushalodurans, residues 8-577 are 30% similar to gb|AAA03040.1| methylmalonyl-CoA small subunit of Streptomyces cinnamonensis, residues 8-617 are 30% similar to gb|AAG47627.1|AF117980_1 methylmalonyl-CoA mutase small subunit of Amycolatopsis mediterranei.This sequence is similar to BT2091.","
InterPro
IPR004608
Family
Methylmalonyl-CoA mutase, beta chain
TIGR00642\"[7-618]TmmCoA_mut_beta
InterPro
IPR006099
Domain
Methylmalonyl-CoA mutase, alpha and beta chain, catalytic
PF01642\"[39-528]TMM_CoA_mutase
PS00544\"[355-380]TMETMALONYL_COA_MUTASE
InterPro
IPR006158
Domain
Cobalamin (vitamin B12)-binding
G3DSA:3.40.50.280\"[485-617]TB12_bd
InterPro
IPR014348
Domain
Cobalamin (vitamin B12)-dependent enzyme, catalytic
G3DSA:3.20.20.240\"[38-477]TCobalamin-dep_enz_cat
noIPR
unintegrated
unintegrated
PTHR23408\"[1-614]TPTHR23408
PTHR23408:SF1\"[1-614]TPTHR23408:SF1
SSF51703\"[4-522]TSSF51703
SSF52242\"[519-618]TSSF52242


","BeTs to 4 clades of COG1884COG name: Methylmalonyl-CoA mutase, N-terminal domain/subunitFunctional Class: IThe phylogenetic pattern of COG1884 is a--k----e-R----------Number of proteins in this genome belonging to this COG is 2","***** IPB001629 (Methylmalonyl-CoA mutase) with a combined E-value of 5.2e-91. IPB001629A 62-85 IPB001629B 247-284 IPB001629C 300-345 IPB001629D 353-407","Residues 411-618 are 98% similar to a (METHYLMALONYL-COA MUTASE ALPHA-SUBUNIT EC) protein domain (PD110236) which is seen in MUTB_PORGI.Residues 420-577 are 29% similar to a (METHYLMALONYL-COA MUTASE BETA-SUBUNIT) protein domain (PD022803) which is seen in MUTA_STRCM.Residues 117-289 are identical to a (MUTASE METHYLMALONYL-COA VITAMIN B12) protein domain (PD004447) which is seen in MUTB_PORGI.Residues 1-116 are identical to a (METHYLMALONYL-COA MUTASE ALPHA-SUBUNIT EC) protein domain (PD212961) which is seen in MUTB_PORGI.Residues 311-410 are 99% similar to a (MUTASE METHYLMALONYL-COA VITAMIN B12) protein domain (PD004310) which is seen in MUTB_PORGI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Thu Mar 28 10:14:06 2002","Tue May 15 12:21:35 MDT 2001","Wed Dec 10 14:40:08 2003","Thu Mar 28 10:12:00 2002","Fri Feb 23 17:07:50 MST 2001","Fri Feb 23 17:07:50 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 34-490 have 28% similarity to PG1446, a predicted methylmalonyl-CoA mutase beta-subunit.","Tue Mar 20 14:53:43 MST 2001","Tue Mar 20 13:34:35 MST 2001","-45% similar to PDB:1E1C METHYLMALONYL-COA MUTASE H244A MUTANT (E_value = 1.4E_46);-45% similar to PDB:1REQ METHYLMALONYL-COA MUTASE (E_value = 1.4E_46);-45% similar to PDB:2REQ METHYLMALONYL-COA MUTASE, NON-PRODUCTIVE COA COMPLEX, IN OPEN CONFORMATION REPRESENTING SUBSTRATE-FREE STATE (E_value = 1.4E_46);-45% similar to PDB:3REQ METHYLMALONYL-COA MUTASE, SUBSTRATE-FREE STATE (POOR QUALITY STRUCTURE) (E_value = 1.4E_46);-45% similar to PDB:4REQ METHYLMALONYL-COA MUTASE SUBSTRATE COMPLEX (E_value = 1.4E_46);","","","Residues 20 to 528 (E-value = 4e-268) place PG1445 in the MM_CoA_mutase family which is described as Methylmalonyl-CoA mutase (PF01642)","Tue Mar 20 13:34:35 MST 2001","34541297","Fri Feb 23 17:07:50 MST 2001","Jackson,C.A., Kirszbaum,L., Dashper,S. and Reynolds,E.C., Cloning, expression and sequence analysis of the genes encoding the heterodimeric methylmalonyl-CoA mutase of Porphyromonas gingivalis W50, Gene 167 (1-2), 127-132 (1995)Jackson CA, Hoffmann B, Slakeski N, Cleal S, Hendtlass AJ, Reynolds EC.A consensus Porphyromonas gingivalis promoter sequence.FEMS Microbiol Lett. 2000 May 1;186(1):133-8.PMID: 10779725","","Thu Mar 28 10:12:00 2002","","1","","26","PG1656" "PG1446","1739487","1741631","2145","ATGAAACCTAATTATAAAGACATCGATATTAAGTCCGCCGGCTTCGTGGCTAAGGATGCTACGCGCTGGGCGGAAGAAAAGGGCATCGTGGCTGACTGGCGTACTCCGGAGCAAATCATGGTAAAGCCCCTCTATACGAAGGACGACCTTGAAGGCATGGAGCATCTCGACTATGTATCCGGTCTGCCTCCTTTCCTGCGAGGCCCCTATAGCGGCATGTATCCCATGCGTCCGTGGACTATTCGCCAGTATGCCGGATTCTCTACGGCGGAAGAGTCGAACGCTTTCTATCGTCGCAATCTGGCCTCCGGTCAGAAGGGTCTGTCCGTGGCATTCGATTTGGCCACGCACCGCGGCTATGACGCGGATCATTCGCGCGTGGTGGGCGATGTCGGCAAGGCCGGTGTTTCCATTTGCTCGCTGGAAGATATGAAAGTCCTTTTCGACGGTATTCCATTGAGCAAGATGTCCGTTTCCATGACGATGAACGGAGCTGTTTTGCCCATCCTGGCTTTCTACATCAATGCCGGACTGGAGCAGGGAGCAAAGCTCGAAGAGATGGCCGGAACGATCCAGAACGACATCCTCAAAGAGTTCATGGTGCGCAACACTTATATCTATCCGCCCGAATTCTCGATGCGGATCATTGCCGACATCTTCGAGTACACCTCTCAGAATATGCCCAAGTTCAATTCGATCTCGATCTCCGGTTACCACATGCAAGAGGCAGGAGCCACCGCCGACATCGAAATGGCCTATACGCTGGCAGACGGTATGCAGTATCTCAAAGCCGGTATCGATGCCGGTATCGATGTGGATGCTTTTGCTCCTCGTCTCTCATTCTTCTGGGCCATCGGCGTCAATCACTTCATGGAGATCGCCAAGATGCGTGCGGCACGCCTCCTATGGGCCAAGATCGTGAAGAGCTTCGGGGCGAAGAACCCCAAGTCATTGGCTCTGCGCACACACAGCCAGACGTCAGGCTGGTCGCTGACGGAGCAGGATCCGTTCAACAATGTCGGACGTACCTGTATCGAAGCTATGGCAGCCGCTTTGGGGCATACCCAGTCGCTGCACACCAATGCTCTCGATGAGGCTATCGCCCTGCCGACGGACTTCTCGGCACGTATTGCCCGTAATACCCAAATCTATATCCAGGAGGAAACTCTCGTCTGCAAGGAAATCGATCCCTGGGGTGGCTCCTACTATGTGGAAAGCCTGACCAACGAACTCGTACACAAGGCGTGGACACTCATCAAGGAAGTACAGGAGATGGGCGGAATGGCAAAAGCCATCGAGACCGGACTACCCAAGCTGCGTATCGAAGAAGCTGCTGCCCGTACACAGGCTCGTATCGACTCGCACCAGCAGGTTATCGTGGGGGTAAACAAGTATCGTCTGCCTAAGGAGGATCCTATAGATATTCTTGAGATCGACAATACGGCTGTTCGTAAGCAGCAGATAGAGCGCCTCAACGATCTCCGCTCTCACCGTGATGAGAAAGCGGTGCAAGAAGCCCTTGAGGCTATCACCAAATGCGTGGAGACGAAAGAGGGTAACCTGCTCGACCTTGCGGTCAAAGCTGCAGGGCTGCGTGCCTCTTTGGGTGAGATCTCGGACGCATGTGAGAAGGTTGTGGGAAGATATAAAGCAGTAATCAGAACTATTTCAGGCGTGTACTCATCCGAATCGGGAGAAGATAAAGACTTCGCCCATGCCAAAGAATTGGCAGAGAAGTTTGCAAAGAAAGAAGGCCGTCAGCCGCGTATCATGATCGCCAAAATGGGGCAGGACGGGCATGACCGTGGTGCCAAAGTGGTCGCTACCGGCTATGCCGACTGCGGATTCGACGTCGATATGGGGCCTCTGTTCCAAACACCGGAAGAAGCCGCTCGTCAAGCTGTGGAAAACGACGTCCACGTGATGGGCGTTTCCTCTCTGGCAGCCGGTCACAAGACGCTGATCCCTCAGGTAATAGCAGAGCTGGAGAAGCTCGGCCGTCCGGATATTCTGGTGACAGCCGGAGGTGTTATACCGGCGCAGGATTACGACTTCCTCTATCAGGCCGGTGTCGCTGCCATCTTCGGCCCCGGTACCCCCGTGGCCTACTCGGCAGCCAAAGTGCTTGAGATTCTTTTGGAAGAA","5.50","-14.59","78697","MKPNYKDIDIKSAGFVAKDATRWAEEKGIVADWRTPEQIMVKPLYTKDDLEGMEHLDYVSGLPPFLRGPYSGMYPMRPWTIRQYAGFSTAEESNAFYRRNLASGQKGLSVAFDLATHRGYDADHSRVVGDVGKAGVSICSLEDMKVLFDGIPLSKMSVSMTMNGAVLPILAFYINAGLEQGAKLEEMAGTIQNDILKEFMVRNTYIYPPEFSMRIIADIFEYTSQNMPKFNSISISGYHMQEAGATADIEMAYTLADGMQYLKAGIDAGIDVDAFAPRLSFFWAIGVNHFMEIAKMRAARLLWAKIVKSFGAKNPKSLALRTHSQTSGWSLTEQDPFNNVGRTCIEAMAAALGHTQSLHTNALDEAIALPTDFSARIARNTQIYIQEETLVCKEIDPWGGSYYVESLTNELVHKAWTLIKEVQEMGGMAKAIETGLPKLRIEEAAARTQARIDSHQQVIVGVNKYRLPKEDPIDILEIDNTAVRKQQIERLNDLRSHRDEKAVQEALEAITKCVETKEGNLLDLAVKAAGLRASLGEISDACEKVVGRYKAVIRTISGVYSSESGEDKDFAHAKELAEKFAKKEGRQPRIMIAKMGQDGHDRGAKVVATGYADCGFDVDMGPLFQTPEEAARQAVENDVHVMGVSSLAAGHKTLIPQVIAELEKLGRPDILVTAGGVIPAQDYDFLYQAGVAAIFGPGTPVAYSAAKVLEILLEE","1739487 1741631","The alpha subunit is immediately upstream at PG1445.TIGR ID: PG1657","methylmalonyl-CoA mutase beta subunit","Cytoplasm","PG1446 is identical to a previously sequenced P.gingivalis protein in GenBank, AAB51084.Numerous significant hits to methylmalonyl-CoA mutase in gapped BLAST; e.g. residues 33-709 are 73% similar to dbj|BAB06674.1| methylmalonyl-CoA mutase alpha subunit of Bacillus halodurans, residues 35-712 are 69% similar to gb|AAF10655.1|AE001958_9 methylmalonyl-CoA mutase, beta subunit of Deinococcus radiodurans, residues 3-712 are 64% similar to gb|AAA03041.1| methylmalonyl-CoA large subunit of Streptomyces cinnamonensis.This sequence is similar to BT2090.","
InterPro
IPR006098
Domain
Methylmalonyl-CoA mutase, alpha chain, catalytic
TIGR00641\"[33-555]Tacid_CoA_mut_N
InterPro
IPR006099
Domain
Methylmalonyl-CoA mutase, alpha and beta chain, catalytic
PF01642\"[33-549]TMM_CoA_mutase
PS00544\"[376-401]TMETMALONYL_COA_MUTASE
InterPro
IPR006158
Domain
Cobalamin (vitamin B12)-binding
G3DSA:3.40.50.280\"[553-712]TB12_bd
PF02310\"[588-710]TB12-binding
InterPro
IPR006159
Domain
Methylmalonyl-CoA mutase, C-terminal
TIGR00640\"[586-715]Tacid_CoA_mut_C
InterPro
IPR014348
Domain
Cobalamin (vitamin B12)-dependent enzyme, catalytic
G3DSA:3.20.20.240\"[33-549]TCobalamin-dep_enz_cat
noIPR
unintegrated
unintegrated
PTHR23408\"[8-715]TPTHR23408
PTHR23408:SF1\"[8-715]TPTHR23408:SF1
SSF51703\"[15-550]TSSF51703
SSF52242\"[551-715]TSSF52242


","BeTs to 4 clades of COG1884COG name: Methylmalonyl-CoA mutase, N-terminal domain/subunitFunctional Class: IThe phylogenetic pattern of COG1884 is a--k----e-R----------Number of proteins in this genome belonging to this COG is 2","***** IPB001629 (Methylmalonyl-CoA mutase) with a combined E-value of 1.7e-127. IPB001629A 60-83 IPB001629B 269-306 IPB001629C 321-366 IPB001629D 374-428","Residues 441-551 are identical to a (MUTASE METHYLMALONYL-COA VITAMIN B12) protein domain (PD005702) which is seen in MUTA_PORGI.Residues 1-32 are identical to a (METHYLMALONYL-COA MUTASE BETA-SUBUNIT EC) protein domain (PD130470) which is seen in MUTA_PORGI.Residues 588-712 are identical to a (COBALT MUTASE VITAMIN B12) protein domain (PD002527) which is seen in MUTA_PORGI.Residues 73-327 are identical to a (MUTASE METHYLMALONYL-COA VITAMIN B12) protein domain (PD004447) which is seen in MUTA_PORGI.Residues 33-69 are identical to a (ISOMERASE METHYLMALONYL-COA MUTASE VITAMIN B12 COBALT) protein domain (PD186539) which is seen in MUTA_PORGI.Residues 331-439 are identical to a (MUTASE METHYLMALONYL-COA VITAMIN B12) protein domain (PD004310) which is seen in MUTA_PORGI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Thu Mar 28 10:13:36 2002","Tue May 15 12:24:56 MDT 2001","Wed Dec 10 14:38:21 2003","Thu Mar 28 10:13:36 2002","Fri Feb 23 17:15:42 MST 2001","Fri Feb 23 17:15:42 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 26-508 have 28% similarity to PG1445, a predicted methylmalonyl-CoA mutase alpha subunit.","Tue May 15 12:24:56 MDT 2001","Tue Mar 20 15:12:21 MST 2001","-77% similar to PDB:1REQ METHYLMALONYL-COA MUTASE (E_value = );-77% similar to PDB:2REQ METHYLMALONYL-COA MUTASE, NON-PRODUCTIVE COA COMPLEX, IN OPEN CONFORMATION REPRESENTING SUBSTRATE-FREE STATE (E_value = );-77% similar to PDB:3REQ METHYLMALONYL-COA MUTASE, SUBSTRATE-FREE STATE (POOR QUALITY STRUCTURE) (E_value = );-77% similar to PDB:4REQ METHYLMALONYL-COA MUTASE SUBSTRATE COMPLEX (E_value = );-77% similar to PDB:6REQ METHYLMALONYL-COA MUTASE, 3-CARBOXYPROPYL-COA INHIBITOR COMPLEX (E_value = );","","","Residues 588 to 710 (E-value = 1.7e-25) place PG1446 in the B12-binding family which is described as B12 binding domain (PF02310)","Tue May 15 12:24:56 MDT 2001","34541298","Tue Mar 20 15:12:21 MST 2001"," Jackson,C.A., Kirszbaum,L., Dashper,S. and Reynolds,E.C., Cloning, expression and sequence analysis of the genes encoding the heterodimeric methylmalonyl-CoA mutase of Porphyromonas gingivalis W50, Gene 167 (1-2), 127-132 (1995)","","Fri Feb 23 17:15:42 MST 2001","","1","","26","PG1657" "PG1447","1742997","1741843","1155","ATGAGTACAAATATAAGCCTATTCGCCCAAGTTATCCGCCTGTTGCCTCGTCCATTGATTAAGAAGCTCTCTACAGAGTTTCAGGTAGACAAGCACAGCAAGCATTTCACCTCATGGCAGCACTTAGTGAGCATGATTTTCAGCCAATTCTCAAGCTGTATCTCCTTACGCGAGATTAGTAATGGCTTACGCTCAGCCACAGGTAACCTCAACCACTTAGGCATATGCACAGCACCCTCTAAGTCCAATTTATCTTATCAGAACGAGCACCGTACCTCAGACTTCTTTCGAGCGTGCTATTATGCCTTGCTAGATTATTTCGGACAGCAGGGTATGGGGCAAGGGCGTAAGTTTCGTTTTAAGCAACCCGTCAAGCTTCTAGACTCTACGACCATTACCCTTTGCCTTGCCCTATACGATTGGGCTAAATACACACATACGAAGGGAGCTGTTAAGCTTCATACACTCTTAGACTTCAAGACTCTGTTGCCTGAATATGTGCATATTAGTGATGGTAAAGGACATGATGGCAAGATGGCCAATTCTATTCCTATCCCAGCAGGAAGTATCGTCGTGGCTGACCGTGGCTATGCTGATACCGCCTTGCTCAATAGTTGGGACAGCACCCAAGTGAGTTTTGTAGTACGCCACCCAAGGTCCTTAAAATATGAGGTTATTCAAGAGTTGGAACTCCCAGAACATGGGCATCAGCAAATACTCGTAGATCAGAGAGTACGGCTCACAGGCGTTCAGACGCAAGGCAAGTACACTAAGCCATTGAGGCATATTGCCCTCTACAACGAGCAACATGGCGATGTCGTTGAGTTATTGACCAACATAGACACCCTTGCAGCAAGTAGTATAGCCTTGCTGTATCGTTCAAGATGGCTTATCGAGATTTTCTTTCGGAATTTGAAGCAACGCCTCAGCATGAAGGCCTTTCTTGGAACAACGCGCAATGCCGTAGAGGTGCAAATATGGACGGCTCTTATTACAATGCTTTTGATGGTCTATCTCAAGAGTATCGCCAAATATCGGTGGTGCTTGTCTAATCTTGTCTCTTCGCTAAGAATCAACACATTTACCAAGATGGATCTGATGCAATGGCTTAATGAGCCGTTTACGCCTCCGCCAGAGCCCGAAAATCAGCTCTTT","10.20","16.13","44087","MSTNISLFAQVIRLLPRPLIKKLSTEFQVDKHSKHFTSWQHLVSMIFSQFSSCISLREISNGLRSATGNLNHLGICTAPSKSNLSYQNEHRTSDFFRACYYALLDYFGQQGMGQGRKFRFKQPVKLLDSTTITLCLALYDWAKYTHTKGAVKLHTLLDFKTLLPEYVHISDGKGHDGKMANSIPIPAGSIVVADRGYADTALLNSWDSTQVSFVVRHPRSLKYEVIQELELPEHGHQQILVDQRVRLTGVQTQGKYTKPLRHIALYNEQHGDVVELLTNIDTLAASSIALLYRSRWLIEIFFRNLKQRLSMKAFLGTTRNAVEVQIWTALITMLLMVYLKSIAKYRWCLSNLVSSLRINTFTKMDLMQWLNEPFTPPPEPENQLF","1743024 1741843","Member of the IS5 family of IS elements.From PubMed: 8382825:Transposable elements were identified in the thermophile Bacillus stearothermophilus CU21 based upon the following criteria: (1) both were found to appear on different plasmids introduced into the same host CU21; (2) signals of homology were found between the genomic DNA of CU21 and each of them; (3) different numbers of Southern hybridization bands were found for the genomic DNA of different strains of B. stearothermophilus; and (4) characteristic inverted repeats at both ends and direct repeats of the target DNA adjacent to them were found for both IS5376 and IS5377. Two open reading frames (ORFs) were detected for IS5376 and one for IS5377. The putative coding products of the ORFs are homologous to those of known ISs from mesophiles and are considered to be transposases.TIGR ID: PG1658","ISPg4 transposase","Inner membrane, Cytoplasm","PG1447 is equivalent to the previously sequenced AF148127 in GenBANK. See also AB009361, AB003149. Several moderate hits in gapped BLAST to transposases. Residues 78-336 are 28% similar to (AE000108) of Rhizobium sp. Residues 20-337 are 27% similar to a transposase from B.subtilis (AB031551). Residues 3-340 are 26% similar to (AP001509) of Bacillus halodurans.","
InterPro
IPR002559
Domain
Transposase, IS4-like
PF01609\"[124-335]TTransposase_11
InterPro
IPR012337
Domain
Polynucleotidyl transferase, Ribonuclease H fold
SSF53098\"[185-350]TRNaseH_fold


","No hit to the COGs database.","***** PF01609 (Transposase (IS4 family)) with a combined E-value of 1.4e-08. PF01609B 288-309","Residues 271-336 are 45% similar to a (TRANSPOSASE PUTATIVE PLASMID ELEMENT) protein domain (PD003301) which is seen in Y4ZB_RHISN.","","Thu Jun 14 12:02:38 MDT 2001","Mon Mar 6 13:48:28 MST 2000","Thu Jun 14 12:02:38 MDT 2001","Thu Jun 14 12:02:38 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:02:38 MDT 2001","Thu Jun 14 12:02:38 MDT 2001","","Tue Jun 26 09:31:27 MDT 2001","Fri Feb 9 09:00:35 MST 2001","Tue Jun 26 09:31:27 MDT 2001","Mon Dec 4 11:47:23 MST 2000","Thu Jun 21 14:13:08 MDT 2001","Thu Jun 21 14:13:08 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1447 is identical to PG0868, PG0445, PG0205, and PG0162, and is essentially identical to PG1461, PG1114, PG1920, PG0043, and PG0016, all predicted ISPg4-related transposases.","Mon Jun 4 16:27:27 MDT 2001","Mon Jun 4 16:27:27 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 124 to 335 (E-value = 6.9e-43) place PG1447 in the Transposase_11 family which is described as Transposase DDE domain (PF01609)","Thu Jun 21 14:13:08 MDT 2001","34541299","","Sawada,K., Kokeguchi,S., Hongyo,H., Sawada,S., Miyamoto,M.,Maeda,H., Nishimura,F., Takashiba,S. and Murayama,Y.Identification by subtractive hybridization of a novel insertionsequence specific for virulent strains of porphyromonas gingivalis. Infect. Immun. 67 (11), 5621-5625 (1999)","Nagai,T., Phan Tran,L.S., Inatsu,Y. and Itoh,Y.A new IS4 family insertion sequence, IS4Bsu1, responsible forgenetic instability of poly-gamma-glutamic acid production inbacillus subtilis. J. Bacteriol. 182 (9), 2387-2392 (2000). Xu,K., He,Z.Q., Mao,Y.M., Sheng,R.Q. and Sheng,Z.J. On two transposable elements from Bacillus stearothermophilus. Plasmid 29 (1), 1-9 (1993). PubMed: 8382825.","Fri Feb 9 09:00:35 MST 2001","Tue Jun 26 09:31:27 MDT 2001","1","","26","PG1658" "PG1448","1743840","1743451","390","ATGAAACAGAATATAGAAGACAAAAAGCTCAAAGAGCTGTTCCGACAGTTACCCAAACAGCCGGCCGGACTCAAACAACGCTTCGACGTGATGCGTGCCGTACGAGAGGAAGCTGCTCGGCGCGAACGGCGTGCCCATCGTCTGTTCGGCATCGCCATGGTGGGAGTATGTGTCCTTGCGGTGGTTGTCTTCGTAGTATTAGACTCCAAGGGATTGTTTAGCGGTCTCGATTTCGATAGCTTGGTTCAAGACCGATCTTTCCGCAATCCCTTCGTCGGTTTGGGCAGCGATATAGCCGGAGCACCTCTGATCTTCCTGTCCGTGGTCATCCTCTTCGGGCTATTCCTCTACGAACTATATCGCAACACGAAGCATCGCGACACCAAGTCA","10.90","8.42","14811","MKQNIEDKKLKELFRQLPKQPAGLKQRFDVMRAVREEAARRERRAHRLFGIAMVGVCVLAVVVFVVLDSKGLFSGLDFDSLVQDRSFRNPFVGLGSDIAGAPLIFLSVVILFGLFLYELYRNTKHRDTKS","1743840 1743451","TIGR ID: PG1659","hypothetical protein","Cytoplasm, Inner membrane","No significant hit found in gapped BLAST with E value less than e-04.","
noIPR
unintegrated
unintegrated
tmhmm\"[48-68]?\"[98-116]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541300","","","","","","1","","","PG1659" "PG1449","1744361","1743840","522","ATGGAGAAGCAATCCGACAGCTACTATATCAGTGCCGTGCAGGCGGGCGATACCGAAAGTTTCGCCCCTTTGGTGGAGCGATACAGCGACATGCTGTATGCTCTCCTCTGTCGGCTGCTACAGGACGAAGAGGATGCGGCCGATCTGCTGCAAGACACCTTCGTAAAGGCTTTCAGGCATATCAGCCGATTCGACGGTCGGAGTTCGTTCTCCACATGGATCTACCGAATCGCCTATAATGAGGCGATAGACCATCTTCGTCGCCACAAGGCCTATGTAACCGATCGGGTAGAGGAGCTACCCGATGTGCCGGACGAAGATCTCGAACCGTCCGGAGAGGATCCGGAGCTGCTGCAGCAAGCATTGGATTCGCTGCCGGCTGCCGACAAAGCCTTGCTGCTCATGTTCTATTCGGATGACTTGTCGGTTCGGGATATAGCGGAAGTGACCGGTATGTCGGAGTCCAACGTGAAGGTCAAGCTCCACCGACTTCGCACCAAACTCTATAAAATGATGAGAAAA","4.60","-10.08","20104","MEKQSDSYYISAVQAGDTESFAPLVERYSDMLYALLCRLLQDEEDAADLLQDTFVKAFRHISRFDGRSSFSTWIYRIAYNEAIDHLRRHKAYVTDRVEELPDVPDEDLEPSGEDPELLQQALDSLPAADKALLLMFYSDDLSVRDIAEVTGMSESNVKVKLHRLRTKLYKMMRK","1744379 1743840","From GenBANK gi:6647855:The sigma factor is an initiation factor that promotes attachment of the RNA polymerase to specific initiation sites and then is released.TIGR ID: PG1660","RNA polymerase sigma factor, ECF subfamily (sigma-70)","Cytoplasm","Numerous hits in gapped BLAST to sigma-70-related sequences, e.g. residues 6-173 are 33% similar to dbj|BAB03982.1| RNA polymerase ECF-type sigma factor of Bacillus halodurans, residues 10-173 are 34% similar to emb|CAB11966.1| RNA polymerase ECF-type sigma factor (sigma-W) of Bacillus subtilis, residues 5-172 are 31% similar to gb|AAG06284.1|AE004716_2 probable sigma-70 factor, ECF subfamily of Pseudomonas aeruginosa.","
InterPro
IPR000792
Domain
Bacterial regulatory protein, LuxR
PS00622\"[140-167]?HTH_LUXR_1
InterPro
IPR007627
Domain
RNA polymerase sigma-70 region 2
PF04542\"[24-92]TSigma70_r2
InterPro
IPR013249
Domain
RNA polymerase sigma factor 70, region 4 type 2
PF08281\"[115-168]TSigma70_r4_2
InterPro
IPR013324
Domain
RNA polymerase sigma factor, regions 3 and 4
SSF88659\"[107-174]TSigma_r3_r4
InterPro
IPR013325
Domain
RNA polymerase sigma factor, region 2
SSF88946\"[1-110]TSigma_r2
InterPro
IPR014284
Domain
RNA polymerase sigma-70
TIGR02937\"[19-172]Tsigma70-ECF
noIPR
unintegrated
unintegrated
G3DSA:1.10.1740.10\"[8-91]TG3DSA:1.10.1740.10


","BeTs to 6 clades of COG1595COG name: Specialized sigma subunits of RNA polymeraseFunctional Class: KThe phylogenetic pattern of COG1595 is ------VCEBRH-----l---Number of proteins in this genome belonging to this COG is 6","***** IPB000838 (Sigma factor, ECF subfamily) with a combined E-value of 1.1e-31. IPB000838A 48-84 IPB000838B 122-168","Residues 32-172 are 27% similar to a (FACTOR SIGMA RNA POLYMERASE) protein domain (PD001205) which is seen in Q45585_BACSU.","","Thu Jun 14 12:02:49 MDT 2001","","Thu Jun 14 12:02:49 MDT 2001","Thu Jun 14 12:02:49 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:02:49 MDT 2001","Thu Jun 14 12:02:49 MDT 2001","","Tue Jun 26 09:35:57 MDT 2001","Tue May 15 12:28:17 MDT 2001","Tue Jun 26 09:35:57 MDT 2001","Tue Mar 20 15:39:48 MST 2001","Tue Jun 26 09:35:57 MDT 2001","Tue Jun 26 09:35:57 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1449 is similar to PG1158, PG0148, and PG0194, all sigma factor-related sequences. Residues 20-172 are 31% similar to PG1158.","Tue Jun 26 09:35:57 MDT 2001","Tue Mar 20 15:39:48 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 24 to 92 (E-value = 2.9e-26) place PG1449 in the Sigma70_r2 family which is described as Sigma-70 region 2 (PF04542)Residues 121 to 170 (E-value = 3.2e-08) place PG1449 in the Sigma70_r4 family which is described as Sigma-70, region 4 (PF04545)","Tue Jun 26 09:35:57 MDT 2001","34541301","","","","","","1","","","PG1660" "PG1450","1744879","1745250","372","GTGTTCTACTTCATCTTTAAGATTTTCGAACTCTACGTACGCCGAGGCGAACGACTTCGCCTGATCGAGAAGCTCGACTCCTTGCCTTCTCCCGAAAGAAATGCAGACTTAACACAGTTAACTTCCTCCTTTAGCACCCGAGACAATCAAGGGCTCGGCATCAAAGTAGGTTTCATGATGGTAGGCATGGGCATCGGACTGCTGCTGGCTTTCTTTCTGACATTTGTTTTCCAACGTGTAATAGAAAATCTTGACGGCTGGAGCTTCGGCCACACATTCGAAACCCTTTCGGGAATCTGTCTGCTGATTTTTGGCGGTCTCGGACTTCTGATTCCTTCCATCATCATGCGCAAGGAGAAGAGAGACAAACAA","10.00","3.18","14169","VFYFIFKIFELYVRRGERLRLIEKLDSLPSPERNADLTQLTSSFSTRDNQGLGIKVGFMMVGMGIGLLLAFFLTFVFQRVIENLDGWSFGHTFETLSGICLLIFGGLGLLIPSIIMRKEKRDKQ","1744846 1745250","TIGR ID: PG1662","hypothetical protein","Cytoplasm","No significant hits in gapped BLAST.","
noIPR
unintegrated
unintegrated
tmhmm\"[56-76]?\"[95-115]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 12:03:26 MDT 2001","","Thu Jun 14 12:03:26 MDT 2001","Thu Jun 14 12:03:26 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:03:26 MDT 2001","Thu Jun 14 12:03:26 MDT 2001","","","Wed Feb 7 15:38:44 MST 2001","Wed Feb 7 15:38:44 MST 2001","Wed Feb 7 15:35:19 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Apr 5 20:02:55 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Apr 5 20:02:55 MDT 2001","34541303","","","","","","1","","","PG1662" "PG1451","1745272","1745928","657","ATGATCGACATCAAAGGCATCCACAAAACTTATCCGGGAGCACAACCTCTACACGTGCTCAAGGGTATAGATCTGCACATCGCCAAAGGGGAGATGGTCTCTATCATGGGAGCATCTGGATCGGGCAAGAGTACGCTGCTGAACATCCTCGGTGTACTCGACACCTACGACGAGGGCGAGTATCGCCTGCACGGCGAACTCATCCGCAATCTCTCCGAGAACCGAGCGGCGGAGATACGArGCAGACTGATCGGATTCGTGTTCCAAAGCTTCAATCTGATCTCATTCAAAAATGCAGTGGAGAACGTTGCCCTAmCCCTTTACTATCAGGGCATGAGTCGCCGCAAACGCAATGAGATGGCCATGGAATACCTCCGACGGGTGGGGCTGGAAGATTGGGCTGATCACCTACCCAACGAACTTTCGGGTGGACAGAAACAGCGCGTTGCCATAGCTCGCGCTTTGGCTGCCAAGCCACAGGTCATTCTGGCGGACGAACCTACGGGAGCACTCGACAGCGTTACGACAGTAGAGGTGATGGAGCTGCTGCGCAGTGTCAATCGCGATGGGATCACTATGGTGATCGTCACGCACGAACAGTCGGTAGCCGACAGTACGGATCGGATTATCCATATCAAAGACGGCATCATCGGGGCC","6.90","-0.31","53708","MIDIKGIHKTYPGAQPLHVLKGIDLHIAKGEMVSIMGASGSGKSTLLNILGVLDTYDEGEYRLHGELIRNLSENRAAEIRXRLIGFVFQSFNLISFKNAVENVALXLYYQGMSRRKRNEMAMEYLRRVGLEDWADHLPNELSGGQKQRVAIARALAAKPQVILADEPTGALDSVTTVEVMELLRSVNRDGITMVIVTHEQSVADSTDRIIHIKDGIIGA","1745272 1745928","See ABC Transporters Analysis.TIGR ID: PG1663","ABC transporter protein, ATP-binding protein","Inner membrane, Cytoplasm","Numerous significant hits to ATP-binding protein in gapped BLAST; e.g. residues 1-217 are 50% similar to gb|AAB97961.1| ATP-binding cassette protein of Streptococcus cristatus, residues 1-217 are 50% similar to pir||D69858 ABC transporter (ATP-binding protein) homolog of Bacillus subtilis, residues 1-215 are 50% similar to gb|AAF94722.1| ABC transporter, ATP-binding protein of Vibrio cholerae.","
InterPro
IPR003439
Domain
ABC transporter related
PD000006\"[140-183]TQ7MU84_PORGI_Q7MU84;
PF00005\"[30-215]TABC_tran
PS50893\"[2-219]TABC_TRANSPORTER_2
PS00211\"[141-155]TABC_TRANSPORTER_1
InterPro
IPR003593
Domain
AAA+ ATPase, core
SM00382\"[29-215]TAAA
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[1-217]Tno description
PTHR19222\"[2-217]TATP BINDING CASSETE (ABC) TRANSPORTER
PTHR19222:SF32\"[2-217]TABC TRANSPORTER


","No hit to the COGs database.","***** IPB001617 (ABC transporters family) with a combined E-value of 7.5e-17. IPB001617A 35-50 IPB001617B 142-153","Residues 24-215 are 26% similar to a (ATP-BINDING TRANSPORT PROTEIN) protein domain (PD039360) which is seen in Y121_METJA.Residues 20-71 are 61% similar to a (ATP-BINDING TRANSPORT PROTEIN TRANSPORTER ABC) protein domain (PD000005) which is seen in YBJZ_ECOLI.Residues 140-182 are 74% similar to a (ATP-BINDING TRANSPORT PROTEIN TRANSPORTER ABC) protein domain (PD000006) which is seen in O54499_BBBBB.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","Tue Feb 6 13:43:16 MST 2001","Tue Feb 6 13:43:16 MST 2001","","Fri Jun 15 23:20:27 MDT 2001","Wed Mar 14 14:26:37 MST 2001","Fri Feb 9 14:13:06 MST 2001","Tue Feb 6 13:43:16 MST 2001","Wed Mar 14 14:26:37 MST 2001","Wed Mar 14 14:26:37 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1451 is similar to PG0618, an ABC transport component; ATPase component. Residues 1-217 are 50% similar to PG0618. Similarities are also seen to PG1477 (ABC transporter ATPase), PG0254, PG1917, PG1211 (ABC transporter (exact function unknown)), PG0921 (oligopeptide ABC transporter), PG0605 (ABC transport system component; ATP-binding protein), PG0584 (ferric enterobactin transport protein/iron(III) dicitrate transport system permeaseprotein), PG0566 (ABC transporter protein), PG1497 (ABC transporter protein, MSD-NBD fusion protein), PG1533 (ABC transporter), PG1048, PG1049, PG0903 (ABC transporter ATP binding protein), PG0844 (ABC transporter), PG1923, PG1084, PG0233 (ABC transporter ATPase), PG1929 (ABC transporter protein,NBD-NBD fusion protein), PG1934 (excinuclease ABC subunit A), PG1467, PG0923 (excinuclease ABC subunit A). ","Mon Jun 4 16:31:59 MDT 2001","Wed Mar 14 14:26:37 MST 2001","-69% similar to PDB:1F3O Crystal structure of MJ0796 ATP-binding cassette (E_value = 8.4E_52);-69% similar to PDB:1L2T Dimeric Structure of MJ0796, a Bacterial ABC Transporter Cassette (E_value = 1.9E_51);-60% similar to PDB:1Z47 Structure of the ATPase subunit CysA of the putative sulfate ATP-binding cassette (ABC) transporter from Alicyclobacillus acidocaldarius (E_value = 2.3E_33);-60% similar to PDB:1B0U ATP-BINDING SUBUNIT OF THE HISTIDINE PERMEASE FROM SALMONELLA TYPHIMURIUM (E_value = 3.0E_33);-55% similar to PDB:1Q12 Crystal Structure of the ATP-bound E. coli MalK (E_value = 1.1E_24);","","","Residues 30 to 215 (E-value = 1.5e-53) place PG1451 in the ABC_tran family which is described as ABC transporter (PF00005)","Tue May 15 12:30:47 MDT 2001","34541304","","","","","","1","","","PG1663" "PG1452","1745956","1747227","1272","ATGTTCGACTTAGACAATTTGCACGAATTAGGAGCCACCCTGCGCAAGAATATGCTGCGTACGGCTCTCACCGGCTTTGCCGTAGCCTGGGGTGTACTGCTGCTAATACTGCTGCTGAGTGCCGGCCGCGGATTCCAGCATGGCATCCGGCACAATGTGGAGCAGTTCGGTATGGGTACGAGTGCGATCAGCTTCTCCACATGGCGTACCAGCAAGGAGTACGGAGGCTATCCCAAGGACAGATACATAGAGCTGACACCTGCTGACTGCGACTATCTGGTCAAGCTCAATCCCGATCTGATCAAAGGTGCGGCATACTATACCAACCAGTGGAGCTACGACGTACAGTACGAAGATCGGACACACTCGACTCCTACGAAAGCCGTATCCGGAGAATACGGCAATATGGTCAAGACGCATCTGATCGAAGGACGTTTCCTCTCCACATCAGACGATGCCATGAAGAGAAAAGTAATAGTCCTATGTGAGCAGACGGCTGATGTCTTATTCGGGGAAAGCATTTCGCCCATAGGGAAATACGTAAATCTGTCCCAAATCCCGTTCCTCGTCGTAGGCGTTTGCAAAGGCGAACAGGGGCAATTCAGCCCCAACTATATTCCTTTCGCCACCTATTCAGGTATTTTCGCCAAAGGGTTCAGTCTGGACTGCACACTGTTCATGAACTGCCCGTCTGTGCGAACTGAGGAGAACGTGGAGAGACTCAAAGTACTACTCAATCGCCAACTGGCCTTCCGCAAGGGCTATGATCCTACCGATATGGAAGTGCCCTATGTCGATGCACCGGTGACGGACATAAAAATGATGGACAAGATATTCAATGGCATGGATGTTTTTCTTTGGATTATCGGGTTGAGCACCCTTGTCATCGGAATTATCGGAGTGGCCAATATCATGCAAGTGACCGTCAATGAAAGACAGCGCGAAATAGGCATTCGCAAAGCACTGGGAGCCAAGCCAAGAGCTATCATCAACATGATTCTGACAGAGGCGGTAGTGGTCACACTGTTTTCCGGACTGATAGGCTTGGTGGCCGGCGTTGGTCTGATGGAGTTCGTATCGCATTGGGTACAGACCACCGGTGTCGGGAGCAGACAGGTAGAAGGAATAACGCTGACACTCTTCCGCGATCCGAGCATCGACCTGAGCACTGCCCTATTAGCTCTGATAGTCATGGTAGTAAGCGGTGCCATAGCAGGATACCAACCCGCCCGCAAAGCCGTACGAATCCCCGCGGTGGAGGCGATGAGAAAC","7.80","2.22","46821","MFDLDNLHELGATLRKNMLRTALTGFAVAWGVLLLILLLSAGRGFQHGIRHNVEQFGMGTSAISFSTWRTSKEYGGYPKDRYIELTPADCDYLVKLNPDLIKGAAYYTNQWSYDVQYEDRTHSTPTKAVSGEYGNMVKTHLIEGRFLSTSDDAMKRKVIVLCEQTADVLFGESISPIGKYVNLSQIPFLVVGVCKGEQGQFSPNYIPFATYSGIFAKGFSLDCTLFMNCPSVRTEENVERLKVLLNRQLAFRKGYDPTDMEVPYVDAPVTDIKMMDKIFNGMDVFLWIIGLSTLVIGIIGVANIMQVTVNERQREIGIRKALGAKPRAIINMILTEAVVVTLFSGLIGLVAGVGLMEFVSHWVQTTGVGSRQVEGITLTLFRDPSIDLSTALLALIVMVVSGAIAGYQPARKAVRIPAVEAMRN","1745956 1747227","See ABC Transporters Analysis.TIGR ID: PG1664","conserved hypothetical protein/possible ABC element with MSD domain","Inner membrane, Cytoplasm","Residues 7-422 have 25% simlarity to AE004234, V. cholerae conserved hypothetical protein.Residues 19-423 have 27% siilarity to AJ223978, B. subtilis YvrN protein.Residues 5-424 have 24% similarity to D90917, Synechocystis sp. hypothetical protein .","
InterPro
IPR003838
Domain
Protein of unknown function DUF214, permase predicted
PF02687\"[227-418]TFtsX


","BeTs to 14 clades of COG0577COG name: Predicted permeaseFunctional Class: RThe phylogenetic pattern of COG0577 is AMt--QVcEBRHuj--OLinxNumber of proteins in this genome belonging to this COG is 8","***** BP03665 (PROTEIN TRANSMEMBRANE CONSERVED MEMBRA) with a combined E-value of 1.9e-17. BP03665B 292-346 BP03665C 398-424","Residues 293-423 are 39% similar to a (PROTEIN TRANSMEMBRANE MEMBRANE CONSERVED INTEGRAL CELL) protein domain (PD003665) which is seen in O34854_BACSU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Fri Jun 15 23:22:08 MDT 2001","Sat Jun 2 17:34:41 MDT 2001","Wed Feb 28 11:10:34 MST 2001","Wed Feb 28 11:10:34 MST 2001","Wed Feb 28 11:10:34 MST 2001","Wed Feb 28 11:10:34 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 2-424 have 30% similarity to PG1453, a putative ABC transporter. Also weak similarity to PG0615 and PG0253, both possible permeases.","Mon Jun 4 16:35:05 MDT 2001","Wed Feb 28 11:10:34 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 227 to 418 (E-value = 1.8e-39) place PG1452 in the FtsX family which is described as Predicted permease (PF02687)","Thu Apr 5 14:54:44 MDT 2001","34541305","","","","","","1","","","PG1664" "PG1453","1747253","1748512","1260","ATGAGATTTTTCGATAGAGATCGTTGGATAGAGATCTGGCATACGATCTACAGCAATCGCAGACGCAGTCTGGCCACAGCCTTCGGTGTATTTTGGGGTATCTTCATGCTCGTCGTACTGACCAGTGTGGGAGCCGGCTTCAGCAATGGTATTCTACGTGAGGTATCGGGCATTGCCTCTAATTCTGCTTTTTACTGGACCAACCTGACCTCAAAACCTTATATGGGTTTCCGCAGCGGTCGAAACTGGAGTATGACCTCCGGAGATATACGGACGGTTCGCAGCCAAGTTCCCGAAGTGGAGTTCATCAGTCCGATCATGTGGGGTGCGAGATCGAATAAAAACGTCGTGTTCGGAGACAAGTCCGAGACATACTCGATAGTAGGAGCAGAACCTGATTATTTCGAAATCAGTCGAGTCAATATCCTGCAAGGCAGAATGCTCAATGCCGTGGACGATAAGCTACGCAGGAAAGTGTGCATGATCGGAAAAGAAGTAAAAGAAAAACTATTCGGGACTACCGACCCTATCGGTCAGGTGCTGCGCGTAAACGGACTATATTATAGAGTGATAGGTGTGCTGGAAGCAAAAAGCAACAACGTTACTATCGGATCATCGCCCAAAAGAAGCGTTTACCTTCCCTATAGCGTGCTACAACAAATATCCAATAGCGGCAATCGTGTGGAGAACTTCGCTGTCAGTGCCTATCCTTCAGCCGACATGAAACAAATGTTCAAGAAGACCGAAACCATCATTCGCAGCCGCAATCAGATAGCACCGGATGATGACAAAGCTCTTTCCAAATTCGATATTTCAGCTCAGTTCCAACTGATGAATATGATTTTCACCGGTATCAATCTGCTTGTTTGGATCGTCGGTATCGGTACTCTGCTTACAGGTATCGTAGGCGTCTCCAATATCATGCTTGTCACCGTTCGCGAACGAACGCGAGAGATCGGTGTTCGACGAGCACTGGGGGCCAAGCCTCGTACGATCATCGGACAGATCCTGAGCGAATCCCTCCTGCTGACGACTTTGGCCGGACTGCTGGGATTGATATTCGGCGTGGGATTGATGAGTGTGGTCGATATGGCTTTTTCCCAAAGCTCTTCCGGAAATTTTCCTTTCTATAATCCTTTGATACCATTCGGTACCGCCTTGCTCTCTCTATTTATCATCATAGCCGGCGGTATACTCGGAGGGTTGCTCCCTGCCTATCGGGCTATCCAAATCAAAGCGATCGATGCCATCAGGGATGAA","10.70","15.20","46584","MRFFDRDRWIEIWHTIYSNRRRSLATAFGVFWGIFMLVVLTSVGAGFSNGILREVSGIASNSAFYWTNLTSKPYMGFRSGRNWSMTSGDIRTVRSQVPEVEFISPIMWGARSNKNVVFGDKSETYSIVGAEPDYFEISRVNILQGRMLNAVDDKLRRKVCMIGKEVKEKLFGTTDPIGQVLRVNGLYYRVIGVLEAKSNNVTIGSSPKRSVYLPYSVLQQISNSGNRVENFAVSAYPSADMKQMFKKTETIIRSRNQIAPDDDKALSKFDISAQFQLMNMIFTGINLLVWIVGIGTLLTGIVGVSNIMLVTVRERTREIGVRRALGAKPRTIIGQILSESLLLTTLAGLLGLIFGVGLMSVVDMAFSQSSSGNFPFYNPLIPFGTALLSLFIIIAGGILGGLLPAYRAIQIKAIDAIRDE","1747253 1748512","See ABC Transporters Analysis.TIGR ID: PG1665","ABC transporter element with MSD domain","Inner membrane, Cytoplasm","Residues 16-362 have 25% similarity to D90917, Synechocystis sp. hypothetical protein. Residues 4-375 have 25% similarity to AE002410, N. meningitidis ABC transporter, ATP-binding protein.Residues 13-332 have 25% simlarity to AE004234,V. cholerae conserved hypothetical protein. ","
InterPro
IPR003838
Domain
Protein of unknown function DUF214, permase predicted
PF02687\"[228-413]TFtsX


","BeTs to 9 clades of COG0577COG name: Predicted permeaseFunctional Class: RThe phylogenetic pattern of COG0577 is AMt--QVcEBRHuj--OLinxNumber of proteins in this genome belonging to this COG is 8","***** BP03665 (PROTEIN TRANSMEMBRANE CONSERVED MEMBRA) with a combined E-value of 4.9e-17. BP03665B 295-349 BP03665C 393-419","Residues 16-199 are 25% similar to a (PROTEIN CONSERVED TRANSMEMBRANE MJ1507) protein domain (PD009620) which is seen in YF07_METJA.Residues 249-362 are 30% similar to a (PROTEIN TRANSMEMBRANE MEMBRANE CONSERVED INTEGRAL CELL) protein domain (PD003665) which is seen in P74738_SYNY3.Residues 137-218 are 32% similar to a (HYPOTHETICAL 43.1 KD PROTEIN) protein domain (PD101250) which is seen in P74738_SYNY3.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Fri Jun 15 23:21:16 MDT 2001","Sat Jun 2 17:35:19 MDT 2001","Wed Feb 28 11:18:39 MST 2001","Wed Feb 28 11:18:39 MST 2001","Wed Feb 28 11:18:39 MST 2001","Wed Feb 28 11:18:39 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 2-419 have 30% similarity to PG1452, a conserved hypothetical protein. Also weak similarity to PG0615, PG0253, PG0614, and PG0252, which are mostly conserved hypothetical proteins (possible permeases).","Mon Jun 4 16:38:11 MDT 2001","Wed Feb 28 11:18:39 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 228 to 413 (E-value = 1.3e-36) place PG1453 in the FtsX family which is described as Predicted permease (PF02687)","Tue May 15 12:34:08 MDT 2001","34541306","","","","","","1","","","PG1665" "PG1454","1748585","1749688","1104","ATGAAAAAGTATTTCAAGATCTTCCTTTGGGTGCTGTTGGCCGTTGCAGTGATCGGCACTTTTATGTTCCTCTGGCAAAAGTCCAAAGCCAAACCCAAAGAGTACCAAATCGAAACGGTAACCAAGCAAGACACGATCGAGAGCAAGACGGTGATCACCGGTACGGTAGAGCCGCGCGACGAAGTGCTCATCAAACCACAGATGAACGGCATCGTAGCCGAACTGCTGCACGAAGCCGGAGACGTGGTACAGAGCGGAGACGTGATCGCCCGCCTCACTGTCGTTCCGGAAATGATCCAGCTTAGTCAGGCCGAGAGCCGTGTCCGTATGGCGGAGATTTCATACGAGCAAGGCAAAGAATCGTATGCCCGCAGCAAAGATCTTTTCGACAAATCGGTCATCGCTCTCGAAGAGTTCGAGGCAGCCGAGGCAAATTTCGCCAAAATCAAAGAGGAACTGTCCAATGCGCGTGAAGCCATGGAGATCGTAAAGAAAGGTGCCAGCAGCCGTACAGCCAAACAGAGCAATACGCTTGTGCGCAGCACGGTAACAGGTAAGATCCTGAATGTCCCGGTCAAAGTGGGTAATTCGGTCATTCAGGCCAATACGTTCAACGAGGGAACGACCATCGCTTCGATAGCGGATATGAACGATTTGATTTTTGTCGGCAAGATAGACGAGACGGAAGTCGGTCGCATTCGACTGGGCTCTCCCATGCGCATTTCGGTGGGAGCATTGGGGAAAGAAAGTTTTCCTGCCACAGTAGAATACCTTGCGCCCAAGGGAAGTATCGTAAACGGAGCTGTACTGTTCGAAGTGAAAGCTTCGGTACATATTCCAAGCGACAGAGTAATCCGTGCCGGCTATAGTGCCAATGCTGAGATCGTACTCGAAGGAGCCTATGGCGTACCGGCCATACCCGAAGCTTGTATAGAGTTCAGTGGCGACAGCACTTTTGTGCAGGTGGTAAAAGCAGAAAAGCCGCTACAGACCGAACGCCGTCAGGTGAAAACCGGCGTGTCGAACGGTTCGAATATCGAAATCAAAAGCGGACTTAAAGTCGGTGAAAAGGTACGTGGAATAGAAAAAACCGAAGAGAAGAAA","8.30","1.47","40187","MKKYFKIFLWVLLAVAVIGTFMFLWQKSKAKPKEYQIETVTKQDTIESKTVITGTVEPRDEVLIKPQMNGIVAELLHEAGDVVQSGDVIARLTVVPEMIQLSQAESRVRMAEISYEQGKESYARSKDLFDKSVIALEEFEAAEANFAKIKEELSNAREAMEIVKKGASSRTAKQSNTLVRSTVTGKILNVPVKVGNSVIQANTFNEGTTIASIADMNDLIFVGKIDETEVGRIRLGSPMRISVGALGKESFPATVEYLAPKGSIVNGAVLFEVKASVHIPSDRVIRAGYSANAEIVLEGAYGVPAIPEACIEFSGDSTFVQVVKAEKPLQTERRQVKTGVSNGSNIEIKSGLKVGEKVRGIEKTEEKK","1748585 1749688","TIGR ID: PG1666","possible periplasmic protein","Inner membrane, Cytoplasm, Periplasm","Residues 1-317 have 22% simlarity to AE004234, V. cholerae conserved hypothetical protein .Residues 6-358 have 19% simialrity to AL162754, N. meningitidis putative periplasmic protein.Residues 1-358 have 21% similarit to AL139075, C. jejuni putative periplasmic protein.This sequence is similar to BT2497.","
InterPro
IPR006143
Family
Secretion protein HlyD
PF00529\"[60-187]THlyD
TIGR01730\"[36-366]TRND_mfp
noIPR
unintegrated
unintegrated
SSF111369\"[47-234]TSSF111369


","BeTs to 7 clades of COG0845COG name: Membrane permeases, predicted cation efflux pumpsFunctional Class: RThe phylogenetic pattern of COG0845 is -----QvCEB-hUJ--ol--xNumber of proteins in this genome belonging to this COG is 6","***** IPB002215 (HlyD family secretion protein) with a combined E-value of 1.5e-06. IPB002215A 58-94 IPB002215B 63-97","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Jun 5 16:14:14 MDT 2001","Wed Dec 17 11:01:43 2003","Wed Feb 28 11:31:36 MST 2001","Wed Feb 28 11:31:36 MST 2001","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 39-358 have 23% similarity to PG0492, cation efflux membrane fusion protein.","Tue Jun 5 16:14:14 MDT 2001","Wed Feb 28 11:31:36 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue May 15 12:55:02 MDT 2001","34541307","","","","","","1","","","PG1666" "PG1455","1749688","1751052","1365","ATGAAACGGACAATCCTCCTGACGGCACTGACCGTCCTATCTTCGCTCTCCTTGCTTCGTGCACAAAATGAATCCGAAGCATCAACCAATCCGATGTCAGGCCTCTCCCTGGAAGACTGTATCCGGATAGCCAAGGAGCGCAACCTGAATCTGCGCAGACAGGAGATCGAACAAGAAAACCGAATCATTAGTCTCGATGCAGCACGACACAGTTTCCTGCCCTCGGTCAATGCAGGCATCGGACACAACTATAGCTTCGGACGTTCGAAAGACAAAACGGGAGTAACCGTAGATCGCTCCTCGATGAATACCAATCTCAGCATCGGAGCTTCGGTGGAAGTATTCAGCGGCACACGTCGTCTGCACGACCTCAAGCAGCAAAAGTACAACGTGGAGGATGGTATAGCCCGACTTCAAAAAGCGCGTGAAGACCTCAGCCTGCAAATCGCGGCTCTCTATATCAATTTGCTCTTCCGTCAGGAAATGACTCGTACGGCAGAAACACAGTTGGCACTGATTCGCGAGCAACGCAATCGCACGGCCGAAATGGTTCGCGTAGGTAAATGGGCAGAGGGTAAGCTCCTCGACATAAATGCCCAGATGGCCAAGGACGAACAACTTCTCGTACAATATCGTTCGGAGGAGGAGCTGGCTCGTCTGGACTTGGGGCAAGCCCTCGAACTGGAGCACCCCGAAAGCATTGCAGTCAAGGCTCCCGACACAGACGTTCTCGTAGCAGAAAGGTTGGGATCTCTCCTTGCTCCCGAAGAGATCTATCGCACGGCTCTCGGCTTGAAACCGGCACTGCATTCGAGCGAGCTGCAAATAGCTTCGGCACGCGAAGGTCTGGCCTCGGCTCGTGCGGCATACTTCCCGACGCTCAGCCTCTCTGCCGGATACAGCAACGGTTACTTCCGCGACCTCGGCAAGGAGTATGCCGCCATCAACCCCTCCTTCTCCGAACAGTGGAAGAACAACGGCAGCTACAGTATCGGACTCTCTTTGAATATCCCCATCTTCTCTGCCATGCAAACGCAAGATCGCGTTCGGAGCAGTCGCCTGCAAATACGCTCAAGCGAGCTTCGACTCGTCGAAGAGAAAAAAGCCCTCTATAAAGAGATCAGGCAAGCATACAGCAATGCCGTGGCAGCCGATAAGGCCATCGCAGCAGCCGAAAACAGCAAGGCCGCTACGCTCAAGGCATACGAATACGCTCGCGACAGCTTCGAGGCAGGGCGCTTGTCTGCCTACGAATATGCCGAGGCAAAAACAAAATACGCCCTCAGCCAAGTGGAAGAACTTCGTGCCAAGTATGACTTCATATACAAAGCCAAAGTTTTGGATTTCTATCAGGGCAAAGACTTC","9.30","4.21","50977","MKRTILLTALTVLSSLSLLRAQNESEASTNPMSGLSLEDCIRIAKERNLNLRRQEIEQENRIISLDAARHSFLPSVNAGIGHNYSFGRSKDKTGVTVDRSSMNTNLSIGASVEVFSGTRRLHDLKQQKYNVEDGIARLQKAREDLSLQIAALYINLLFRQEMTRTAETQLALIREQRNRTAEMVRVGKWAEGKLLDINAQMAKDEQLLVQYRSEEELARLDLGQALELEHPESIAVKAPDTDVLVAERLGSLLAPEEIYRTALGLKPALHSSELQIASAREGLASARAAYFPTLSLSAGYSNGYFRDLGKEYAAINPSFSEQWKNNGSYSIGLSLNIPIFSAMQTQDRVRSSRLQIRSSELRLVEEKKALYKEIRQAYSNAVAADKAIAAAENSKAATLKAYEYARDSFEAGRLSAYEYAEAKTKYALSQVEELRAKYDFIYKAKVLDFYQGKDF","1749688 1751052","Veith et al. 2002 identified this protein by two-dimensional gel electrophoresis and peptide mass fingerprinting of outer membranes prepared from strain W50. They present the following results: Based on signal peptide sequence comparisons to PG0626, PG0627, PG1592, PG1840, PG0836, PG0023, PG1893, the mature N-terminus of this protein is predicted to be pyroglutamate.TIGR ID: PG1667","outer membrane protein P49","Outer membrane, Periplasm","PG1455 is equivalent to the previously sequenced AF175719 in GenBANK, an immunoreactive 51kD antigen PG52 in P.gingivalis. Note that PG0611, a paralog, also shows high degree of similarity to this sequence. Residues 1-455 are virtually identical to AF175719. See also AF175720.","
InterPro
IPR003423
Family
Outer membrane efflux protein
PF02321\"[37-227]T\"[255-452]TOEP
noIPR
unintegrated
unintegrated
SSF56954\"[35-452]TSSF56954


","BeTs to 3 clades of COG1538COG name: Putative outer membrane proteinFunctional Class: SThe phylogenetic pattern of COG1538 is -----Q-c----uj------xNumber of proteins in this genome belonging to this COG is 4","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Thu Feb 7 16:15:45 2002","Mon Feb 11 12:20:12 2002","Thu Jan 18 15:43:38 MST 2001","Thu Feb 7 16:15:45 2002","","","yes","Fri Feb 20 15:41:32 MST 1998","PG1455 is weakly similar to PG0611, PG0083, PG0490, and PG0259, all of which have features of outer membrane proteins that show some similarity to alkaline secretion proteases. Residues 28-450 are 48% similar to PG0611, a probable outer membrane protein.","Mon Jun 4 16:39:54 MDT 2001","Thu Mar 8 11:34:30 MST 2001","-44% similar to PDB:1EK9 2.1A X-RAY STRUCTURE OF TOLC: AN INTEGRAL OUTER MEMBRANE PROTEIN AND EFFLUX PUMP COMPONENT FROM ESCHERICHIA COLI (E_value = 4.6E_12);-44% similar to PDB:1TQQ Structure of TolC in complex with hexamminecobalt (E_value = 4.6E_12);","","","Residues 37 to 227 (E-value = 3.8e-11) place PG1455 in the OEP family which is described as Outer membrane efflux protein (PF02321)Residues 255 to 452 (E-value = 2.7e-22) place PG1455 in the OEP family which is described as Outer membrane efflux protein (PF02321)","Tue May 15 12:59:52 MDT 2001","34541308","","Veith,P., Talbo,G., Slakeski,N., Dashper,S., Moore,C.,Paolini,R., Reynolds,E., Major outer membrane proteins and proteolytic processing of RgpA, and Kgp of Porphyromonas gingivalis W50, Biochem J. 2002 (in press).","","Thu Feb 7 16:15:45 2002","","1","","","PG1667" "PG1459","1757811","1758233","423","ATGTCAATGATCGCTGTCTTTTTATCCCCTATCCTCCCACCTCACGGCACAGAGCCGATCAAGCAGCGGACAGTGGGTGCAAAAGTAAAACCTTTTTCCGAATCGGCAAAATCAATCGGCTCTTTTTTCAGGGCTGACGCTCAAGAAAAAGCTCGTCGCCTGATCCTCCCCCTAAAAAAAGAATCCCGACGCGCTCGGCGGAACAATTCCTCTATCAATCGGGCAGCAATCGCTTTTGCGGTCACAAAAGTACGCCTTTTTTCTTTACAGACAAATCTTTCAAAATCTTTTTTCAACCGGTTCGACAAAAAAAACAGCCCCCGAAGAAAAGGACTCCCTCCCAAGAAAGAAGACAAAAGGGAGCGGATATATAATATGTTCGCGCGCGTAAGAACAATTAAAAAGACCGCAAACGAAAAGAAA","12.20","26.23","16201","MSMIAVFLSPILPPHGTEPIKQRTVGAKVKPFSESAKSIGSFFRADAQEKARRLILPLKKESRRARRNNSSINRAAIAFAVTKVRLFSLQTNLSKSFFNRFDKKNSPRRKGLPPKKEDKRERIYNMFARVRTIKKTANEKK","1757811 1758233 [Shorter 1881 280 99]","NO TIGR ID corresponds to this gene.","hypothetical protein","Periplasm","No signifiacnt hits in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Feb 8 10:36:25 MST 2001","Thu Feb 8 10:36:25 MST 2001","Thu Feb 8 10:34:58 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","PG1459 is virtually identical to PG0088, PG1119, and PG1814, all hypotheticals.","Thu Feb 8 10:34:58 MST 2001","Thu Aug 16 14:48:22 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Aug 16 14:48:22 2001","","","","","","","1","","","" "PG1461","1758531","1759685","1155","ATGAGTACAAATATAAGCCTATTCGCCCAAGTTATCCGCCTGTTGCCTCGTCCGTTGATTAAGAAGCTCTCTACAGAGTTTCAAGTAGACAAACATAGCAAACACTTCACAGGGTGGCAACACTTAGTGAGCATGATTTTCAGCCAATTCTCAAGCTGTATCTCCTTACGCGAGATTAGTAATGGCTTACGCTCAGCCACAGGTAACCTCAACCACTTAGGCATATGCACAGCACCCTCTAAGTCCAATTTATCTTATCAGAACGAGCACCGTACCTCAGACTTCTTTCGAGCGTGCTATTATGCCTTGCTAGATTATTTCGGACAGCAGGGTATGGGGCAAGGGCGTAAGTTTCGTTTTAAGCAACCCGTCAAGCTTCTAGACTCTACGACCATTACCCTTTGCCTTGCCCTATACGATTGGGCTAAATACACACATACGAAGGGAGCTGTTAAGCTTCATACACTCTTAGACTTCAAGACTCTGTTGCCTGAATATGTGCATATTAGTGATGGTAAAGGACATGATGGCAAGATGGCCAATTCTATTCCTATCCCAGCAGGAAGTATCGTCGTGGCTGACCGTGGCTATGCTGATACCGCCTTGCTCAATAGTTGGGACAGCACCCAAGTGAGTTTTGTAGTACGCCACCCAAGGTCCTTAAAATATGAGGTTATTCAAGAGTTGGAACTCCCAGAACATGGGCATCAGCAAATACTCGTAGATCAGAGAGTACGGCTCACAGGCGTTCAGACGCAAGGCAAGTACACTAAGCCATTGAGGCATATTGCCCTCTACAACGAGCAACATGGCGATGTCGTTGAGTTATTGACCAACATAGACACCCTTGCAGCAAGTAGTATAGCCTTGCTGTATCGTTCAAGATGGCTTATCGAGATTTTCTTTCGGAATTTGAAGCAACGCCTCAGCATGAAGGCCTTTCTTGGAACAACGCGCAATGCCGTAGAGGTGCAAATATGGACCGCTCTTATTACAATGCTTTTGATGGTCTATCTCAAGAGTATCGCCAAATATCGGTGGTGCTTGTCTAATCTTGTCTCTTCGCTAAGAATCAACACATTTACCAAGATGGATCTGATGCAATGGCTTAATGAGCCGTTTACGCCTCCGCCAGAGCCCGAAAATCAGCTCTTT","10.20","16.13","44057","MSTNISLFAQVIRLLPRPLIKKLSTEFQVDKHSKHFTGWQHLVSMIFSQFSSCISLREISNGLRSATGNLNHLGICTAPSKSNLSYQNEHRTSDFFRACYYALLDYFGQQGMGQGRKFRFKQPVKLLDSTTITLCLALYDWAKYTHTKGAVKLHTLLDFKTLLPEYVHISDGKGHDGKMANSIPIPAGSIVVADRGYADTALLNSWDSTQVSFVVRHPRSLKYEVIQELELPEHGHQQILVDQRVRLTGVQTQGKYTKPLRHIALYNEQHGDVVELLTNIDTLAASSIALLYRSRWLIEIFFRNLKQRLSMKAFLGTTRNAVEVQIWTALITMLLMVYLKSIAKYRWCLSNLVSSLRINTFTKMDLMQWLNEPFTPPPEPENQLF","1758531 1759685","Member of the IS5 family of IS elements.TIGR ID: PG1673","ISPg4 transposase","Inner membrane, Cytoplasm","PG1461 is equivalent to the previously sequenced AF148127 in GenBANK. See also AB009361, AB003149. Residues 20-337 are 27% similar to a transposase from B.subtilis (AB031551).","
InterPro
IPR002559
Domain
Transposase, IS4-like
PF01609\"[124-335]TTransposase_11
InterPro
IPR012337
Domain
Polynucleotidyl transferase, Ribonuclease H fold
SSF53098\"[185-350]TRNaseH_fold


","No hit to the COGs database.","***** PF01609 (Transposase (IS4 family)) with a combined E-value of 1.4e-08. PF01609B 288-309","Residues 271-336 are 45% similar to a (TRANSPOSASE PUTATIVE PLASMID ELEMENT) protein domain (PD003301) which is seen in Y4ZB_RHISN.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Fri Feb 9 08:37:13 MST 2001","Fri Feb 9 08:25:45 MST 2001","Wed Jan 3 13:42:22 MST 2001","Mon Dec 4 11:52:24 MST 2000","Mon Jun 4 16:43:30 MDT 2001","Mon Jun 4 16:43:30 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1461 is identical to PG0016, and is essentially identical to PG0162, PG1114, PG1920, PG0043, PG1447, PG0868, PG0445, and PG0205, all predicted ISPg4-related transposases.","Mon Jun 4 16:43:30 MDT 2001","Mon Jun 4 16:43:30 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 124 to 335 (E-value = 6.9e-43) place PG1461 in the Transposase_11 family which is described as Transposase DDE domain (PF01609)","Mon Jun 4 16:43:30 MDT 2001","34541313","","Sawada,K., Kokeguchi,S., Hongyo,H., Sawada,S., Miyamoto,M.,Maeda,H., Nishimura,F., Takashiba,S. and Murayama,Y.Identification by subtractive hybridization of a novel insertionsequence specific for virulent strains of porphyromonas gingivalis. Infect. Immun. 67 (11), 5621-5625 (1999)","Nagai,T., Phan Tran,L.S., Inatsu,Y. and Itoh,Y.A new IS4 family insertion sequence, IS4Bsu1, responsible forgenetic instability of poly-gamma-glutamic acid production inbacillus subtilis. J. Bacteriol. 182 (9), 2387-2392 (2000)","Fri Feb 9 08:37:13 MST 2001","Fri Feb 9 08:37:13 MST 2001","1","","15","PG1673" "PG1461.1","1759815","1760174","360","ATGATCGAACAAGTAGGAATCGGACGATTTCAGCAAGCCAAGTTGCTGAATTTCATGATCGACGAAGTCAAAGATGCCCGCACCATCGGTGCAAGCGAACTCACACCGACACCGGATGAGTTGGACAGAGTGCTAAAGATTTTCAAAGCCGGTCCGGCACAAATCATCGCCAGCGAACACTCAGCCAAAGTGGTTGCATTCGATGCCGTCCGCGACGAGGCCTTCCGCAACCTGACAGGTTGTATCCGGGGCAAAACTTTCCGCCCCGAAGCCGCAGGGGCGAAGCTGCCCAACGACTCGAAATTCTATTGCGTGCATACAAAAGACTCGACAAAAAGAGCTACCGCAACGAGACCGAGC","0.00","0.00","13177","MIEQVGIGRFQQAKLLNFMIDEVKDARTIGASELTPTPDELDRVLKIFKAGPAQIIASEHSAKVVAFDAVRDEAFRNLTGCIRGKTFRPEAAGAKLPNDSKFYCVHTKDSTKRATATRPS","","TIGR ID: PG1674The first 90 residues of PG1461.1 show similarity to residues 10-99 of PG0405, while the first 108 residues of PG1462 show similarity to residues 93-191 of PG0405 suggesting a longer hemagglutinin-like pseudogene.","possible hemagglutinin-related protein","Cytoplasm","No significant hit using gapped BLAST.","No hits reported.","No hit to the COGs database.","","","Mon Jul 9 16:30:13 MDT 2001","Mon Jul 9 16:30:13 MDT 2001","Mon Jul 9 16:30:13 MDT 2001","Mon Jul 9 16:30:13 MDT 2001","Mon Jul 9 16:30:43 MDT 2001","Mon Jul 9 16:30:13 MDT 2001","Mon Jul 9 16:30:13 MDT 2001","Mon Jul 9 16:30:43 MDT 2001","Mon Jul 9 16:30:43 MDT 2001","Mon Jul 9 16:30:13 MDT 2001","Mon Jul 9 17:03:36 MDT 2001","Mon Jul 9 16:50:05 MDT 2001","Mon Jul 9 17:06:02 MDT 2001","Mon Aug 20 16:44:57 2001","Mon Jul 9 16:30:13 MDT 2001","Mon Jul 9 16:30:13 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1-90 are 58% similar to PG0405, a conserved hypothetical protein (possible hemegglutinin) and residues 2-87/3-87 are 24% similar to PG1721, hagB, and PG1724, hagC.","Mon Jul 9 16:40:06 MDT 2001","Mon Jul 9 16:30:13 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jul 9 16:30:13 MDT 2001","","","","","","","1","Mon Jul 9 16:30:13 MDT 2001","15","PG1674" "PG1462","1760054","1760386","333","TTGTATCCGGGGCAAAACTTTCCGCCCCGAAGCCGCAGGGGCGAAGCTGCCCAACGACTCGAAATTCTATTGCGTGCATACAAAAGACTCGACAAAAAGAGCTACCGCAACGAGACCGAGCTGATGTACAAACTCGCCGAAGAACTCCGAAGCGATAAGTACAAAGCGGACGTAACGAAACTGGCTATCTCCACTTGGGTAGACAAGATGGACGAAGCCAACAAAGCTTTCGACCGGATATTCGACCTCCACAGCCGGCGAATCGGGCGAATTGCCCCAAATCCCCTCCGAACCGTCCTCACCGAGTGGCGGATCCGATACCGATGGCAGCAG","11.00","10.23","13412","LYPGQNFPPRSRRGEAAQRLEILLRAYKRLDKKSYRNETELMYKLAEELRSDKYKADVTKLAISTWVDKMDEANKAFDRIFDLHSRRIGRIAPNPLRTVLTEWRIRYRWQQ","1760054 1760386 [Shorter 1885 264 99]","NO TIGR ID corresponds to this gene.","hypothetical protein","Periplasm, Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Feb 28 11:39:13 MST 2001","","Wed Feb 28 11:39:13 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 4-108 have 48% similarity to PG0405, a conserved hypothetical protein (possible hemagglutinin protein).","Mon Jun 4 16:46:05 MDT 2001","Wed Feb 28 11:39:13 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jul 9 16:52:42 MDT 2001","","","","","","","1","","15","" "PG1464","1762189","1760585","1605","ATGAGCAAATTAGATTTGACAAAGTATGGCATTCTCAATGCCACTGAGATTATCCACAACCCATCTTACGAGTTCCTTTTTGAAGAAGAGACCAAAGCCGGTCTCGAAGGCTTTGAGAAAGGACAGCTTACCGAACTGGGAGCAGTCAATGTGATGACCGGTGTCTATACGGGTCGTTCGCCCAAGGATAAGTTCTTCGTCATGGACGATACAACCAAAAACACCATCTGGTGGACGTCGGACGAATACAAGAACGACAACAAACCGGTGACTCCGGAGGCGTGGAAGAGTATCAAAAAGCTGGCCGTGGAGCAGCTCTCCGGCAAGCGTCTTTTCGTCGTGGACACGTTCTGCGGCGCCAACGAAAGCTCTCGGTTGAAAATCCGCTTTATCATGGAGGTGGCCTGGCAGGCCCACTTCGTCAAGAATATGTTTATCCGCCCCACGGAAGAGGAGCTGGCCAACTACGGCGAGCCCGACTTCGTGGTGATGACTGCTTCCAAAGCGAAGGTGGAAAACTACAAAGAGCTGGGACTGAACTCCGAGACGGCCGTCGTATTCAACCTGACCGAGAAGGTGCAAGTGATCCTGAACACATGGTACGGCGGTGAGATGAAGAAAGGTATGTTCTCCTACATGAACTACCTGCTCCCTCTGCGCGGTATGGCTTCGATGCACTGCTCCGCCAATACGAGCATGGACGAGAAGGAGACGGCTATCTTCTTCGGTCTGTCCGGTACGGGCAAGACCACGCTCAGTACGGATCCGAAGCGCAAGCTGATCGGCGATGACGAGCACGGCTGGGACAAGGACGGTATCTTCAACTTCGAAGGCGGATGCTACGCCAAGGTGATCAACCTGAGCCGCGAGAACGAACCGGACATCTACAATGCCATTCGTCGCAATGCGCTGCTGGAGAACGTGACCGTGGATGCTGCCGGTAAGATCGACTTCGGTGACAAATCCGTGACGGAGAATACTCGCGTCTCTTATCCGATCTACCACATCGAGAACATCGTGAAGCCCGTGTCCAAAGCCGGCCATGCCAAGAAGGTGATCTTCCTCTCGGCCGATGCTTTCGGCGTATTGCCTCCCGTTTCCATCCTGACTCCGGAGCAGACCAAGTATTACTTCCTCTCGGGCTTTACCGCCAAGCTGGCCGGTACCGAGCGTGGCATCACGGAGCCTACGCCTACGTTCTCCGCTTGCTTCGGAGCGGCTTTCCTCTCGCTTCATCCTACGAAGTATGCCGAGGAGCTGGTGAAGAAAATGGAGATGGTGGGAGCTACGGCTTACCTCGTCAATACGGGTTGGAACGGTACGGGCAAGCGCATCTCTATCAAGGATACGCGTGGTATCATCGATGCCATCCTCGACGGCTCCATCGACAAGGCTCCGACCAAGGCTATTCCTTTCTTCGACTTCAAGGTGCCGACGGCTCTGCCCGGTGTGGATCCGAATATCCTCGATCCGCGCGACACCTATGCCGATGCCGCCGAGTGGACGACGAAAGCGAAGGATCTGGCCGAACGTTTCATCAAAAACTTCGTCAAGTTCACGGGCAATGATGCCGGCAAGGCTCTCGTAGCAGCAGGGCCGAAGCTC","6.40","-2.45","59383","MSKLDLTKYGILNATEIIHNPSYEFLFEEETKAGLEGFEKGQLTELGAVNVMTGVYTGRSPKDKFFVMDDTTKNTIWWTSDEYKNDNKPVTPEAWKSIKKLAVEQLSGKRLFVVDTFCGANESSRLKIRFIMEVAWQAHFVKNMFIRPTEEELANYGEPDFVVMTASKAKVENYKELGLNSETAVVFNLTEKVQVILNTWYGGEMKKGMFSYMNYLLPLRGMASMHCSANTSMDEKETAIFFGLSGTGKTTLSTDPKRKLIGDDEHGWDKDGIFNFEGGCYAKVINLSRENEPDIYNAIRRNALLENVTVDAAGKIDFGDKSVTENTRVSYPIYHIENIVKPVSKAGHAKKVIFLSADAFGVLPPVSILTPEQTKYYFLSGFTAKLAGTERGITEPTPTFSACFGAAFLSLHPTKYAEELVKKMEMVGATAYLVNTGWNGTGKRISIKDTRGIIDAILDGSIDKAPTKAIPFFDFKVPTALPGVDPNILDPRDTYADAAEWTTKAKDLAERFIKNFVKFTGNDAGKALVAAGPKL","1762348 1760585","From GenBANK:1172573:Phosphoenolpyruvate carboxykinase is a rate-limiting gluconeogenic enzyme, catalyzing the reaction: ATP + oxaloacetate = ADP + phosphoenolpyruvate + CO2. It is allosterically activated by calcium and positively regulated by cAMP.TIGR ID: PG1676","phosphoenolpyruvate carboxykinase","Cytoplasm","Numerous significant hits to phosphoenolpyruvate carboxykinase in gapped BLAST; e.g. residues 6-535 have 79% similarity to U95960, A. succiniciproducens, residues 2-535 have 74% similarity to AE004339, Vibrio cholerae, residues 1-535 have 74% similarity to AB016600, S. ruminantium.This sequence is similar to BT2790.","
InterPro
IPR001272
Family
Phosphoenolpyruvate carboxykinase (ATP)
PIRSF006294\"[3-535]TPEP_crbxkin
PF01293\"[13-488]TPEPCK_ATP
TIGR00224\"[1-535]TpckA
PS00532\"[260-275]TPEPCK_ATP
InterPro
IPR008210
Domain
Phosphoenolpyruvate carboxykinase, N-terminal
PD004738\"[6-221]TPEPCK_N
noIPR
unintegrated
unintegrated
G3DSA:3.40.449.10\"[20-221]TG3DSA:3.40.449.10
G3DSA:3.90.228.20\"[222-535]TG3DSA:3.90.228.20
SSF53795\"[222-519]TSSF53795
SSF68923\"[1-221]TSSF68923


","BeTs to 3 clades of COG1866COG name: Phosphoenolpyruvate carboxykinaseFunctional Class: CThe phylogenetic pattern of COG1866 is ----y---eb-h---------Number of proteins in this genome belonging to this COG is 1","***** IPB001272 (Phosphoenolpyruvate carboxykinase (ATP)) with a combined E-value of 4.2e-261. IPB001272A 43-79 IPB001272B 119-163 IPB001272C 195-218 IPB001272D 236-268 IPB001272E 269-302 IPB001272F 303-339 IPB001272G 352-403 IPB001272H 423-439 IPB001272I 440-478 IPB001272J 488-519","Residues 488-534 are 72% similar to a (PHOSPHOENOLPYRUVATE CARBOXYKINASE ATP GLUCONEOGENESIS) protein domain (PD025270) which is seen in PPCK_HAEIN.","","Thu Jun 14 12:03:36 MDT 2001","","Thu Jun 14 12:03:36 MDT 2001","Thu Jun 14 12:03:36 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:03:36 MDT 2001","Thu Jun 14 12:03:36 MDT 2001","","Tue Jun 26 09:48:30 MDT 2001","Wed Feb 28 11:46:48 MST 2001","Fri Dec 19 10:07:05 2003","Wed Feb 28 11:46:48 MST 2001","Tue Jun 26 09:48:30 MDT 2001","Tue Jun 26 09:48:30 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Feb 28 11:46:48 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Jun 26 09:48:30 MDT 2001","34541315","","","Laivenieks,M., Vieille,C. and Zeikus,J.G. 1997. Cloning, sequencing, and overexpression of the Anaerobiospirillumsucciniciproducens phosphoenolpyruvate carboxykinase (pckA) gene. Appl. Environ. Microbiol. 63 (6): 2273-2280. PubMed: 9172347.","","Tue Mar 20 15:54:09 MST 2001","1","","15","PG1676" "PG1465","1762485","1763738","1254","ATGACGATAGAACAATTCAATTTCGCCGGCAAGAAAGCCTTCGTGCGCGTCGATTTCAACGTTCCCCTCGATGACAACTTTAAGATCACCGACGACACCCGCATCCGCGCAGCCCTCCCCACTCTCCGCAAGATCATAGCCGACGGCGGTATGACCATCATCGGCTCTCATCTGGGACGCCCCAAAGGCGTAGCACCGGAGTTCTCCCTCCGGCATATCCTGCCGCACGTATCCGAACTGCTCGGCGTGGATGTCCTCTTTGCCGATGACTGCATCGGAGCCGATGCCATGGACAAAGCGGCCAAGCTCAAAGCCGGCCAAGTGCTGCTGCTCGAAAATCTCCGCTTCTATGCCGAGGAGGAAGGTAAGCCGCGCGGACTCTCCGACGATGCTTCGGACGAAGAAAAAGCCGCAGCGAAGAAAGCCGTCAAGGCTGCTCAGAAAGAGTTTACGCAAAAGCTGGCTTCCATGGCCGACTGCTACGTGAACGATGCTTTCGGCACAGCGCATCGGGCACATGCTTCCACAGCACTGATCGCTGACTACTTCGACCGAGACCACAAAATGTTCGGCTATCTGATGGAGAAAGAAGTAAAAGCCGTAGAAAGAGTGCTGCACGACATCAAGCGGCCGTTCACCGCCATCATGGGAGGCTCCAAGGTATCGACCAAGATAGAAATCATCGAGAACCTACTCAACAAAGTGGATAACCTGATCCTGACCGGCGGAATGACCTATACTTTCACCAAAGCGGCAGGCGGTCGGATAGGCCTCTCCATCGTGGAAGACGACAAGCTGGATTTGGCTCGCGACATCGTGAAGAAAGCAGCCGAAAAGGGCGTCAATCTGATACTCTCCGTGGATACGAAAGTAGCCGACAGGTTCGACAACGATGCAGCCACCCAAGTATGCAGCAATATGGAGATACCCGACGACTGGATGGGTATGGACATAGGCCCCCGGTCGATCGAGAAATTCCGCAAAGTAATACTCGAATCCAAAACGATCCTTTGGAACGGTCCCACGGGAGTATTCGAATTTGACAACTTCTCCATAGGCTCGAAAGCCGTCGGCGAAGCCATCGTGGAAGCTACGGCCAATGGAGCCTTCTCGCTGGTCGGAGGAGGAGACAGCGTTGCCTGCGTGAACAAATTCGGTCTTGCCGATAAGGTATCCTACGTCTCCACGGGTGGCGGAGCCTTGCTCGAAGCCATCGAGGGCAAAACCCTCCCCGGCATTGCAGCCATCCAAGGA","5.60","-6.47","45055","MTIEQFNFAGKKAFVRVDFNVPLDDNFKITDDTRIRAALPTLRKIIADGGMTIIGSHLGRPKGVAPEFSLRHILPHVSELLGVDVLFADDCIGADAMDKAAKLKAGQVLLLENLRFYAEEEGKPRGLSDDASDEEKAAAKKAVKAAQKEFTQKLASMADCYVNDAFGTAHRAHASTALIADYFDRDHKMFGYLMEKEVKAVERVLHDIKRPFTAIMGGSKVSTKIEIIENLLNKVDNLILTGGMTYTFTKAAGGRIGLSIVEDDKLDLARDIVKKAAEKGVNLILSVDTKVADRFDNDAATQVCSNMEIPDDWMGMDIGPRSIEKFRKVILESKTILWNGPTGVFEFDNFSIGSKAVGEAIVEATANGAFSLVGGGDSVACVNKFGLADKVSYVSTGGGALLEAIEGKTLPGIAAIQG","1762428 1763738","From GenBANK gi:129918: In bacteria, phosphoglycerate kinase catalyzes the second step in the second phase of glycolysis, ATP + 3-phospho-D-glycerate = ADP + 3-phospho-D-glyceroyl phosphate.From GenBANK:129915: In plants, e.g. wheat, phosphoglycerate kinase also catalyzes the same reaction in the Calvin Cycle and is located in the chloroplast. From PubMed: 2780287: We have isolated and sequenced both the chloroplast and cytosolic versions of phosphoglycerate kinase from wheat. Analysis of this data in relation to that for phosphoglycerate kinase sequences of mammals, prokaryotes and yeasts suggests that the wheat genes have recombined. This has resulted in the chloroplast and cytosolic kinases being more similar to each other than would be expected if the chloroplast enzyme had evolved directly from that of a prokaryotic progenitor.TIGR ID: PG1677","phosphoglycerate kinase (cytosolic phosphoglycerate kinase)","Cytoplasm","Numerous significant hits to phosphoglycerate kinase proteins in gapped BLAST; e.g. residues 2-416 are 52% similar to dbj|BAA33801.1| cytosolic phosphoglycerate kinase 1 of Populus nigra, residues 2-416 are 51% similar to gb|AAF70260.1|AF247560_1 cytosolic phosphoglycerate kinase of Arabidopsis thaliana, residues 2-416 are 48% similar to gb|AAA73203.1| phosphoglycerate kinase of Bacillus megaterium.This sequence is similar to BT1672.","
InterPro
IPR001576
Family
Phosphoglycerate kinase
PR00477\"[7-23]T\"[29-51]T\"[157-179]T\"[190-212]T\"[213-232]T\"[335-360]T\"[371-382]T\"[394-411]TPHGLYCKINASE
PIRSF000724\"[2-418]TPgk
PTHR11406\"[1-418]TPGK
PF00162\"[1-416]TPGK
SSF53748\"[1-418]TPGK
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.1260\"[1-193]TG3DSA:3.40.50.1260
G3DSA:3.40.50.1270\"[200-418]TG3DSA:3.40.50.1270


","BeTs to 16 clades of COG0126COG name: 3-phosphoglycerate kinaseFunctional Class: GThe phylogenetic pattern of COG0126 is amtkyqvcebrhujgpolin-Number of proteins in this genome belonging to this COG is 1","***** IPB001576 (Phosphoglycerate kinase family) with a combined E-value of 9.4e-109. IPB001576A 7-41 IPB001576B 52-61 IPB001576C 106-120 IPB001576D 159-179 IPB001576E 190-234 IPB001576F 275-295 IPB001576G 319-354 IPB001576H 392-413","Residues 2-416 are 51% similar to a (KINASE PHOSPHOGLYCERATE TRANSFERASE GLYCOLYSIS MULTIGENE) protein domain (PD000619) which is seen in O82158_POPNI.","","Thu Jun 14 12:04:03 MDT 2001","","Thu Jun 14 12:04:03 MDT 2001","Thu Jun 14 12:04:03 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:04:03 MDT 2001","Thu Jun 14 12:04:03 MDT 2001","","Tue Jun 26 10:07:12 MDT 2001","Tue Mar 20 16:12:59 MST 2001","Mon Dec 8 15:28:42 2003","Tue Mar 20 16:12:59 MST 2001","Tue Jun 26 10:07:12 MDT 2001","Tue Jun 26 10:07:12 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 20 16:12:59 MST 2001","-63% similar to PDB:1PHP STRUCTURE OF THE ADP COMPLEX OF THE 3-PHOSPHOGLYCERATE KINASE FROM BACILLUS STEAROTHERMOPHILUS AT 1.65 ANGSTROMS (E_value = 3.3E_102);-63% similar to PDB:1VPE CRYSTALLOGRAPHIC ANALYSIS OF PHOSPHOGLYCERATE KINASE FROM THE HYPERTHERMOPHILIC BACTERIUM THERMOTOGA MARITIMA (E_value = 2.9E_98);-62% similar to PDB:1KF0 Crystal Structure of Pig Muscle Phosphoglycerate Kinase Ternary Complex with AMP-PCP and 3PG (E_value = 3.2E_89);-62% similar to PDB:1VJC Structure of pig muscle PGK complexed with MgATP (E_value = 5.5E_89);-62% similar to PDB:1VJD Structure of pig muscle PGK complexed with ATP (E_value = 5.5E_89);","","","Residues 1 to 417 (E-value = 1.1e-190) place PG1465 in the PGK family which is described as Phosphoglycerate kinase (PF00162)","Tue Jun 26 10:07:12 MDT 2001","34541316","","","Schlapfer,B.S., Branlant,C., Branlant,G. and Zuber,H. 1990. Nucleotide sequence of the phosphoglycerate kinase gene fromBacillus megaterium. Nucleic Acids Res. 18 (21): 6423. PubMed: 2123031.","","Tue Mar 20 16:12:59 MST 2001","1","","15","PG1677" "PG1466","1763939","1765330","1392","ATGATATTTTGGGCCATTTACTTCCTGTTCGTAGGTGTGAGCCTTTTTATTTTTGGTCTTTTCTTTCCGATCATAATTAAGGAAAGCTTTCCGGCTCTTGCTCCTATGCAAATAATGACCGGACTCATTCCTTTCCTGATGCTTGCCGGTCTGGTGATCCGCCTTTTCCTGCAACCGCTCAACTATATAAATGAAAACTACTACCGGCAGCTGCCGATACCGCGCAAAGCCATAGCACAGTACCTTATATTCCGCCCATTGGCCAATCCGATCAATTACTACGTCTTCGTTTTCCTCTTTCTGCCTTACAGCATTGTGACGGGGATAGAAGAAGGGGCAGCCGATTTCGCTGTAGCCCTCGTCACCCTGCTGATGCTTACGCTGACCGATATGCTCTTGGCTCCATATCTGAAGCGCATACTGGGCGATGGTCTCCGATTCTATATCATCGTCATCGGTGCCATAGCCCTCATGCTCGCCACAGAAATCACCGGATTCGTGCCTTGGTCGGACTGCCTGTTCCGCTTCGTCTCGTCCCTTCCGGTATATATCGTATGGATCTGCATGGCATCGATATTGGCCGGAACATATATAGCGAGCCAGCGGTATTTCAGACAGCATCGCTATGCTAAAGAGCGCACCAAATCCAACAGCACGGAGCGGTACCACAATCTGAATTTTGTGCGTCAGCATGGTATCATAGGCGAGGTGATAGCACTGCATATCAAGCTCATCTTGCGCTCCAAACGCCTTCGCAGTACTTTCATCTTTTCCTTCTTGTTCATATTGTACGGCCTTCTCTTCTACAGGGAAAGCAATGCGGATACGATGACCGCATATGCGATTATCGCCAATATCATCGTCAGCTCCCTGATGCTGATGCAGCAGCAATTCGTGATACGGTGGGACTGTGCTTTCTTCGATGGACTGATGGCGCAAGCCATAACCTCCCGAACCTACATTCGCAGCCACTACATCATACTGATGATACTCAATGCAGCCAGCTTCATCCTGAGCACACCCTATTTCCTGATGGGAGAGGAAATTGTCTACCTGCACATCTCGCTCTTTCTATGGAACAGCGGTATAGGAACGATCTTCATCCTGCTAATGGCATGCTTCAATAAAGGCTACATAGAAGTAATGTCGAGAAGCGTAATGAACCAACAAGGCACTTCGATGGTCAATATCCTGATAGCGTTGCCGACGATGATGGTCGCCCCGGTTTTGTTGGTTGTACTGAAGTGGCTCACCGATACGCGTACAGCCGAAATCGCCATCGGTCTGATCGGCCTGATCGGCCTGATGATGCACAAGCCCCTCCTGAACTTCTGCACACGCATTTTCTCTCGTCAGAAACACGCTTTGGCAGAAAGCTTCCGCAAACGCAAA","10.50","18.68","53267","MIFWAIYFLFVGVSLFIFGLFFPIIIKESFPALAPMQIMTGLIPFLMLAGLVIRLFLQPLNYINENYYRQLPIPRKAIAQYLIFRPLANPINYYVFVFLFLPYSIVTGIEEGAADFAVALVTLLMLTLTDMLLAPYLKRILGDGLRFYIIVIGAIALMLATEITGFVPWSDCLFRFVSSLPVYIVWICMASILAGTYIASQRYFRQHRYAKERTKSNSTERYHNLNFVRQHGIIGEVIALHIKLILRSKRLRSTFIFSFLFILYGLLFYRESNADTMTAYAIIANIIVSSLMLMQQQFVIRWDCAFFDGLMAQAITSRTYIRSHYIILMILNAASFILSTPYFLMGEEIVYLHISLFLWNSGIGTIFILLMACFNKGYIEVMSRSVMNQQGTSMVNILIALPTMMVAPVLLVVLKWLTDTRTAEIAIGLIGLIGLMMHKPLLNFCTRIFSRQKHALAESFRKRK","1763861 1765330","See ABC Transporters Analysis.TIGR ID: PG1679","conserved hypothetical protein; possible ABC element with MSD domain","Inner membrane, Cytoplasm","This sequence corresponds to gi:34397634 in Genbank.Its nearest neighbor in the NR database is gi:53712309 from Bacteroides fragilis YCH46.","
noIPR
unintegrated
unintegrated
signalp\"[1-19]?signal-peptide
tmhmm\"[5-25]?\"[39-57]?\"[90-110]?\"[116-138]?\"[147-169]?\"[179-199]?\"[249-269]?\"[275-293]?\"[324-344]?\"[354-374]?\"[395-415]?\"[425-445]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 12:04:15 MDT 2001","","Thu Jun 14 12:04:15 MDT 2001","Thu Jun 14 12:04:15 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:04:15 MDT 2001","Thu Jun 14 12:04:15 MDT 2001","","Tue Mar 8 14:13:11 2005","Tue Mar 8 14:13:11 2005","Tue Mar 8 14:13:11 2005","Sat Jun 2 17:23:29 MDT 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Sat Jun 2 17:23:29 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Fri Jun 15 22:43:42 MDT 2001","34541318","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Tue Mar 8 14:13:11 2005","","1","","15","PG1679" "PG1467","1765571","1766065","495","GTGACGATTAAGGGCCGTGTCGGAGCCTTCCTCGACGAAAGCTTCCTCATCGGCTTCCTGCGTCCGGAGGAGTATTTCGATTTCATCGGCAAGCTCCACCACCTCGACAAGCAGGAGATAGAGCGTTTTCTCGACTACATGTCGCCCCTCTTTGCCGATGAAGTTTTGGGCAAGAACAAACTCATTCGGGATTTTTCCAAAGGGAATCAAAAGAAGATAGGCATAGCCGCTGCCATGCTCTCTCGCCCCGATATATTGATCCTCGACGAACCGTTCACGGCTCTCGATCCTTCCTCACAAATACGGCTGAAGAAAATGCTCAACGAACATGCAACCCAATACGGTACCACCATGCTTATCTCCAGCCACGACCTCAACCACGTGACCGAAGTCAGCAGCCGCATCGTAGTACTGCAAAAAGGCGAGATCATCAAAGACCTCCAAACAAACGAACAGACCCTATCCGAACTCGAACAACACTTCGCCGTCGAAGGA","5.60","-4.55","18757","VTIKGRVGAFLDESFLIGFLRPEEYFDFIGKLHHLDKQEIERFLDYMSPLFADEVLGKNKLIRDFSKGNQKKIGIAAAMLSRPDILILDEPFTALDPSSQIRLKKMLNEHATQYGTTMLISSHDLNHVTEVSSRIVVLQKGEIIKDLQTNEQTLSELEQHFAVEG","1765571 1766065","See ABC Transporters Analysis.TIGR ID: PG1680","ABC transporter protein","Cytoplasm","Residues 4-144 have 32% simialrity to D64001, Synechocystis sp. ABC transporter.Residues 7-149 have 32% simliarity to U91581, Lactococcus lactis subsp. lactis LctF.Residues 1-164 have 30% similarity to AJ276653, R. gnavus RumF protein.","
InterPro
IPR003439
Domain
ABC transporter related
PD000006\"[64-100]TQ89ZQ8_BACTN_Q89ZQ8;
PF00005\"[59-141]TABC_tran
PS00211\"[65-79]?ABC_TRANSPORTER_1
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[3-156]Tno description
PTHR19222\"[6-146]TATP BINDING CASSETE (ABC) TRANSPORTER


","BeTs to 6 clades of COG1131COG name: ABC-type multidrug transport system, ATPase componentFunctional Class: RThe phylogenetic pattern of COG1131 is AmTKy-VCEBR-uJ-pol--xNumber of proteins in this genome belonging to this COG is 3","No significant hit to the Blocks database.","Residues 52-163 are 28% similar to a (PUTATIVE ABC TRANSPORTER) protein domain (PD131033) which is seen in O69995_STRCO.","","","","","","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","","","","Tue Jun 26 10:10:13 MDT 2001","Wed Feb 28 11:54:56 MST 2001","Tue Jun 26 10:09:51 MDT 2001","Wed Feb 28 11:54:56 MST 2001","","Fri Jun 15 22:42:52 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 6-144 have 27% similarity to PG0844, ABC transporter.Residues 1-161 have 25% similarity to PG0605, ABC transport system component; ATP-binding protein.Residues 58-155 have 26% similarity to PG0921, oligopeptide ABC transporter.Residues 27-162 have 27% similarity to PG0903, ABC transporter ATP binding protein, ","Wed Feb 28 12:43:14 MST 2001","Wed Feb 28 11:54:56 MST 2001","-54% similar to PDB:1VPL Crystal structure of ABC transporter ATP-binding protein (TM0544) from Thermotoga maritima at 2.10 A resolution (E_value = 3.1E_12);-60% similar to PDB:1OXS Crystal structure of GlcV, the ABC-ATPase of the glucose ABC transporter from Sulfolobus solfataricus (E_value = 3.4E_11);-60% similar to PDB:1OXT Crystal structure of GlcV, the ABC-ATPase of the glucose ABC transporter from Sulfolobus solfataricus (E_value = 3.4E_11);-60% similar to PDB:1OXU Crystal structure of GlcV, the ABC-ATPase of the glucose ABC transporter from Sulfolobus solfataricus (E_value = 3.4E_11);-60% similar to PDB:1OXV Crystal structure of GlcV, the ABC-ATPase of the glucose ABC transporter from Sulfolobus solfataricus (E_value = 3.4E_11);","","","Residues 1 to 141 (E-value = 3.3e-10) place PG1467 in the ABC_tran family which is described as ABC transporter (PF00005)","Fri Jun 15 22:42:52 MDT 2001","","","","","","","1","","15","PG1680" "PG1468","1766555","1768528","1974","ATGAGTTACCTCAAATTCGACAAAACGCTCATGGCGAATCTGGATGAATCGCTTCAGCGCGAATACATCCGCACCAATCGAAAAGGGGCTTATTCCAGCTCTACGATAGTAGGCTGCAATACCCGTAAATATCATGGTCTGTTGGTCGTTCCCATTCCCGAGCTGGGGGATCAGAATCGCGTACTGCTGTCGTCTCTGGATCTGACCATTATCCAGCATGGAGCGGAGTTCAACGTAGCGGTTCATCACTACAAAGGCGGAGTCATCAGTCCGAACGGTCATAAGTATATCCGCGAATACAATGTGGATATAATACCGGCCACCATCTTTCGCGTGGGAGGAGTGGTACTCAAGCGCGAACAAGTATTCTGCCACTACATCAATCGTGCCATATTCAAATACACGCTGATGGAAGCACATAGCGATACGCTACTGCGCTTTCGTCCCCTGCTTGCTTTCAGGAGCGTGGCAGCTCTCACTCACGAAAACGGGCAGATCGAACGTGGACATATCCCGGCCCGAAACGGCATAGGGATCAGCCTCTACAAGGGTTATCCCCATCTCTTCATGCAGTTCAGCAAAGAACCCGAATACCGCGAGGAGGGATATTGGTACAAAGACTTCGAATACCCCAAGGAAAAAGAGCGTGGATACGAGTGTACGGAGGATCTTTACATGCCCGGCACATTCGAGATTCCCATAAAAAAAGGAGAATCCATCTACTTTGCTGCCGGTCTTGAAGAGGCCAATCCAAATACCCTCCGAACGACATTTGTCAAGGAAGTACGAGAGCGCATCCCACGCGAAGATTTTTTCAGCTGCCTGAGGAATGCAGCTCACCAGCTCTACTACCGCCCTACCCCCGACGATGGCTACCTTCTGGCCGGCTATCCGTGGTTCGACGTTCGAGCTCGCGATCTGTTCGTGGCACTACCCGGCTGTACTCTGTGTGTAGAAGCACCGGAGCGATTCGAACGCATCGTCAATACCGTCATTCCGGCGATGGAACGCTACATGCGACTGCATGAAGATGACGACACCATACACGGGCTGCATGAGCCGGACGTTGGGATTTGGGCTATTTGGGCCATCCAGCAGTATGCACGCCGCAACGGTCTGGAAGCAGCCAAGAGATTCGGCTCCTTCGTCAGCGAAGTGGTATCTTATTATCTGTCCGCCCAGCACCCGACGGCACAAATTCGTGAAAATGGGCTTCTCTACGTCTTAGGCACAGGCTTCCCGTTAAGTTGGATGGATGCCAAACTGAATGGCAAAGCCGTCATCCCCCGTGAGGGCTATCTCGTCGAATTGAATGCTCTCTGGTACAATGCCCTCTGCTTCGAACGAGAACTCAATGGGGAAAAACCGGAGATCGGCGAAATCATCAGCCGGATCGAAAGATCCTTCCCCGATACGTTTCTGAATTGCTACAACTATCTCTTCGATTACGTTCAGGACGGCAAAGCTCAGGACTGGAGCGTACGCCCGAACATGCTCTTCGCCATATCCCTCCCCTACTCCCCACTACAACGCGATCGGCAACTGCAAGTACTCGAGATCATCACAAGAGAACTGCTGACGCCGAAAGGGCTTCGAAGCCTAAGTCCCAAGAGCGAAGGCTACCGGCCTTACTGCCGTGGCAAACAAGAAGAACGGGAACTGGCCTACTACAATGGTTCGGTATGGCCTTGGCTACTCGGACAATACACCGAAGCCTATCTGCGTTTATACGGGAATAGCGGAGTGACCTTTCTCGAAAGGATGCTTATCGGCATGGAAGAGGAACTACAGATGCACGGTATCGGCACCATCTCGGAGTTGTTCGACGGCAATCCGCCTTTCATGGGGCGCGGAGCTATCTCTTTTGCTATGAGCGTAGGAGAGATATTGAGAGCCAAAGAGCTACTGAACAGGACAGAATCCGATATGCACCTGAGTGTACGTCATATGTACAATTATACAAAATGGAAAGGA","6.90","-1.02","76083","MSYLKFDKTLMANLDESLQREYIRTNRKGAYSSSTIVGCNTRKYHGLLVVPIPELGDQNRVLLSSLDLTIIQHGAEFNVAVHHYKGGVISPNGHKYIREYNVDIIPATIFRVGGVVLKREQVFCHYINRAIFKYTLMEAHSDTLLRFRPLLAFRSVAALTHENGQIERGHIPARNGIGISLYKGYPHLFMQFSKEPEYREEGYWYKDFEYPKEKERGYECTEDLYMPGTFEIPIKKGESIYFAAGLEEANPNTLRTTFVKEVRERIPREDFFSCLRNAAHQLYYRPTPDDGYLLAGYPWFDVRARDLFVALPGCTLCVEAPERFERIVNTVIPAMERYMRLHEDDDTIHGLHEPDVGIWAIWAIQQYARRNGLEAAKRFGSFVSEVVSYYLSAQHPTAQIRENGLLYVLGTGFPLSWMDAKLNGKAVIPREGYLVELNALWYNALCFERELNGEKPEIGEIISRIERSFPDTFLNCYNYLFDYVQDGKAQDWSVRPNMLFAISLPYSPLQRDRQLQVLEIITRELLTPKGLRSLSPKSEGYRPYCRGKQEERELAYYNGSVWPWLLGQYTEAYLRLYGNSGVTFLERMLIGMEEELQMHGIGTISELFDGNPPFMGRGAISFAMSVGEILRAKELLNRTESDMHLSVRHMYNYTKWKG","1766555 1768528","TIGR ID: PG1681","glycogen debranching enzyme/4-alpha-glucanotransferase","Cytoplasm, Inner membrane","Residues 18-632 have 30% similarity to AL445064, T. acidophilum glycogen debranching enzyme isoform 1 (agl) related protein .Residues 480-651 and 287-475 have 36% and 28% similarity to AE001881, D. radiodurans glycogen debranching enzyme-related protein.Residues 482-573 have 27% similarity to AB018078, S. cerevisiae oligo-1,4 - 1,4-glucantransferase / amylo-1,6-glucosidase.This sequence is similar to BT4303.","
InterPro
IPR008928
Domain
Six-hairpin glycosidase-like
SSF48208\"[256-632]TGlyco_trans_6hp
InterPro
IPR010401
Family
Amylo-alpha-1,6-glucosidase
PTHR10569\"[1-650]TGDE_C
PF06202\"[276-631]TGDE_C


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue May 15 13:59:23 MDT 2001","Mon Jan 5 12:20:31 2004","Wed Feb 28 13:43:24 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Feb 28 13:43:24 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 276 to 631 (E-value = 2.8e-48) place PG1468 in the GDE_C family which is described as Amylo-alpha-1,6-glucosidase (PF06202)","Tue May 15 13:41:58 MDT 2001","34541319","","","","","","1","","15","PG1681" "PG1469","1768528","1769787","1260","ATGAAAGCGTTGATGTTCGGTTGGGAGTTCCCCCCACATATCCTCGGCGGATTGGGAACAGCCAGCTATGGCCTTACCAGAGGGATGGCCATGCAGCCCGACATGGATATTACTTTCGTCATTCCCAAACCGTGGGGAGACGAGGACAAGAGTTTCCTCCGACTCATAGGCACCAACTGCACTCCCATAGTATACAAAAATGTCCCCACCGAAACGGTGACCCAACTCTTGGGCAACCGAATGGATCTCCGGACATACGAGGATCTGCGCAGCAACATTTATGCCGATTTTAGCTACAAGAAGACGGATGCCCTCGGCTGTATCGAATTTTCCGGACGCTATCCGGACAATCTGCTGGAAGAGATCAATAATTACTCCATCGTAGCAGGCGTGATAGCGCGTACCATACCGTGCGACGTGATCCACTCCCACGACTGGCTCACCTATCCGGCCGGCATACATGCCAAAACGGTTACAGGGAAGCCGCTCGTGGTTCATGTACACGCTACGGACTTCGACCGCAGCAGGGGTAATGTGAATCCCCAAGTTTTTGCCATCGAGAAAGACGGTATGAACCATGCGGATCATATCATCACGGTCAGCAATCTGACCAGACGGACCGTCATTGAAAAGTACGGACAGCATCCCGACAAGGTGACCACGGTGCACAATGCGGTAGAGCCTCTGCCTGCCTCTATTCTGGCTTTGCCCGACAAACGCGGCGTGAAAGACAAAGTAATTACCTTCCTCGGACGAATCACGATGCAGAAAGGCCCGGAATACTTCGTCGAAGCAGCGGCCAAAGTACTCGAACGCACATCCGACGTACGCTTCGTAATGGCCGGAAACGGCGACATGATGGACGCCATGATCAGGCTGGCTGCCCGACACAAGATAGCCGACCGCTTCCACTTCACAGGATTTATGAAAGGCGAACAGGTGTACGAGGTATTTAAGGCAAGCGATGTCTATGTGATGCCATCCGTATCCGAGCCATTCGGCATCTCTCCACTCGAAGCCATGCAATGCGGAGTCCCCTCCATTATTTCCAAACAGAGCGGATGTGCCGAGATTCTGGATTACGCCATCAAAGTGGACTATTGGGACATCGATGCCATGGCAGACGCCATGCATGCGCTTATAGCTTATCCGGAACTGCATACTTTCTTGCGGGACGAGGGTCTCCGAGAGGTGAACAACATCAAGTGGGAGACTGCAGGACAAAAGGTACGTGACATATATAATAAAGTAACAGGACGA","6.50","-3.84","47039","MKALMFGWEFPPHILGGLGTASYGLTRGMAMQPDMDITFVIPKPWGDEDKSFLRLIGTNCTPIVYKNVPTETVTQLLGNRMDLRTYEDLRSNIYADFSYKKTDALGCIEFSGRYPDNLLEEINNYSIVAGVIARTIPCDVIHSHDWLTYPAGIHAKTVTGKPLVVHVHATDFDRSRGNVNPQVFAIEKDGMNHADHIITVSNLTRRTVIEKYGQHPDKVTTVHNAVEPLPASILALPDKRGVKDKVITFLGRITMQKGPEYFVEAAAKVLERTSDVRFVMAGNGDMMDAMIRLAARHKIADRFHFTGFMKGEQVYEVFKASDVYVMPSVSEPFGISPLEAMQCGVPSIISKQSGCAEILDYAIKVDYWDIDAMADAMHALIAYPELHTFLRDEGLREVNNIKWETAGQKVRDIYNKVTGR","1768519 1769787","TIGR ID: PG1682","glycosyl transferase, group 1 family protein","Cytoplasm","This sequence corresponds to gi:34397636 in Genbank.Its nearest neighbor in the NR database is gi:53712291 from Bacteroides fragilis YCH46.","
InterPro
IPR001296
Domain
Glycosyl transferase, group 1
PF00534\"[233-397]TGlycos_transf_1
noIPR
unintegrated
unintegrated
PTHR12526\"[2-70]T\"[110-417]TPTHR12526
PTHR12526:SF42\"[2-70]T\"[110-417]TPTHR12526:SF42
SSF53756\"[1-417]TSSF53756


","BeTs to 14 clades of COG0438COG name: Glycosyltransferases IFunctional Class: MThe phylogenetic pattern of COG0438 is AMTKYQVCEBRhUj--o---XNumber of proteins in this genome belonging to this COG is 9","***** PF00534 (Glycosyl transferases group 1) with a combined E-value of 3.3e-13. PF00534B 324-359***** BP00427 (PROTEIN TRANSFERASE BIOSYNTHE) with a combined E-value of 1.5e-08. BP00427B 219-224 BP00427E 250-261 BP00427F 275-286 BP00427G 322-335","Residues 162-307 are 30% similar to a (PROTEIN TRANSFERASE GLYCOSYLTRANSFERASE BIOSYNTHESIS) protein domain (PD000427) which is seen in P73369_SYNY3.","","Thu Jun 14 12:04:53 MDT 2001","","Thu Jun 14 12:04:53 MDT 2001","Thu Jun 14 12:04:53 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:04:53 MDT 2001","Thu Jun 14 12:04:53 MDT 2001","","","Wed Mar 16 10:19:28 2005","Wed Mar 16 10:19:28 2005","Tue May 15 14:45:09 MDT 2001","Tue Jun 26 10:20:15 MDT 2001","Tue Jun 26 10:20:15 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1469 is weakly similar to PG0114, a mannosyltransferase, PG1023, a probable glycosyltransferase, and PG1180, a conserved hypothetical protein. Residues 139-417 are 23% similar to PG0114.","Tue Jun 26 10:20:15 MDT 2001","Wed Mar 16 10:19:28 2005","No significant hits to the PDB database (E-value < E-10).","","","Residues 231 to 397 (E-value = 1.6e-32) place PG1469 in the Glycos_transf_1 family which is described as Glycosyl transferases group 1 (PF00534)","Tue Jun 26 10:20:15 MDT 2001","34541320","","","","","","1","","15","PG1682" "PG1470","1769787","1771070","1284","ATGAAACATATCTGCTTATACTTCCAAATACATCAGCCGTTTCGTCTGAAACGATACCGATTTTTCGACATCGGGAACGACCATTACTACTACGACGACTTCCGCAATGAAGAAATCATGCGACGGATCACACAGAAGTGCTATCTGCCGGCCAATCTGCTTTTGAAGGAAATCATTGCCGAACATCCCGAGTTTCGAGTAGCATTTTCTATTTCCGGTACTGCTTTGGAACAGCTGGAGTCCTATTCGCCGGAGGCCTTGGACACCTTCAGAGATTTGGCCGAAACGGGCTGTGTAGAGTTTCTGGCCGAAACCTACGCTCATTCCCTCTCGTCGCTCTATGATCCCGAAGAATTTTACAATCAGACGATGATCCATAGTCGTCGGATGGAAGAGCTGTTCGGTGTAAAACCCCGAGTGCTGCGCAATACAGAGTTGATCTTCTCCGACAACATTGCCACCCAAGTGGCAGAAATGGGTTTTCAAGGGATGCTCACGGAAGGAGCCAAACACATACTCGGATGGAAGAGTCCGAACTATCTGTACAAAGCCGGATCCGCTCCGGAGTTGTCCCTCTTGCTCCGCAATCCGAGGCTGAGCGATGCCATCAGTGCCATGTTCACCCGCTACGATTGGAACGAATATCCCCTGACGGCAGACAAGATGATCCGTTGGATCGAAGAGACTCCCGAAGAGGAGCAGATATTCAATCTCTTCATGAACTACGAAGTCTTGGGATCGCTCCATCCGCAGGAGTCGGGTATTTTCGATTTCTTTCGTGCACTCCCTTCTTTGGCGAAAAAGAGCGAAGGTGTCAAATTCGCTACGCCATCGGAGTTGATAGAGTCCTCCAGCCCCGTAGCCAAGTTCTCCTCCATCTACCCCATAAGCTGGGTAGGAGAAGAAAAAGATACCGGTACGTGGCTGGGCAATGTGCTGCAACAAGGAGCATGCGACAAACTCGAACAATGGGGCGAACGTGTACGTATGATCGACGATCAGCGTATGCTACAGGACTGGCTCTATCTACAGAGCGCCGACCACTTCTACTATATGAAAACCCGTGGCGGAGACGCCGGCAACTTCAGCCCGTACGAAACGCCTTACGATGCTTTCAACAACTATATGAATGTGCTCAGCGACTTCCTGCTTCGCGTAGAAGCCCGCTACCCTTCTACGATAGAAAATGAAGAACTGAAAGCCTTGCTGACTACAATCAGAAATCAGGATAAACAAATCAAAAAATTAGAAGAGACAATCAAACGTCAAAAAACGAAAACAACA","5.10","-12.97","50016","MKHICLYFQIHQPFRLKRYRFFDIGNDHYYYDDFRNEEIMRRITQKCYLPANLLLKEIIAEHPEFRVAFSISGTALEQLESYSPEALDTFRDLAETGCVEFLAETYAHSLSSLYDPEEFYNQTMIHSRRMEELFGVKPRVLRNTELIFSDNIATQVAEMGFQGMLTEGAKHILGWKSPNYLYKAGSAPELSLLLRNPRLSDAISAMFTRYDWNEYPLTADKMIRWIEETPEEEQIFNLFMNYEVLGSLHPQESGIFDFFRALPSLAKKSEGVKFATPSELIESSSPVAKFSSIYPISWVGEEKDTGTWLGNVLQQGACDKLEQWGERVRMIDDQRMLQDWLYLQSADHFYYMKTRGGDAGNFSPYETPYDAFNNYMNVLSDFLLRVEARYPSTIENEELKALLTTIRNQDKQIKKLEETIKRQKTKTT","1769787 1771070","TIGR ID: PG1683","alpha-amylase","Cytoplasm","Residues 4-382 have 38% similarity to U67601, M. jannaschii alpha-amylase (amyA). Residues 35-383 have 35% similarity to AL445064, T. acidophilum alpha-amylase related protein.Residues 37-162 have 29% similarity to AP000001, P. horikoshii 633aa long hypothetical alpha-amylase.This sequence is similar to BT4305.","
InterPro
IPR004300
Family
Glycoside hydrolase, family 57
PF03065\"[7-321]TGlyco_hydro_57
noIPR
unintegrated
unintegrated
SSF88713\"[1-353]TSSF88713


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 36-168 are 43% similar to a (PROTEIN ALPHA-AMYLASE HYDROLASE) protein domain (PD005063) which is seen in AMY_METJA.Residues 172-382 are 36% similar to a (PUTATIVE ALPHA-AMYLASE EC 3.2.1.1) protein domain (PD136195) which is seen in AMY_METJA.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Feb 28 13:52:30 MST 2001","Mon Jan 5 12:23:33 2004","Wed Feb 28 13:52:30 MST 2001","","Wed Feb 28 13:52:30 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Feb 28 13:52:30 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 7 to 321 (E-value = 9.3e-75) place PG1470 in the Glyco_hydro_57 family which is described as Glycosyl hydrolase family 57 (PF03065)","Tue May 15 15:00:58 MDT 2001","34541321","","","","","","1","","15","PG1683" "PG1471","1771070","1771543","474","ATGAAAAAAGTAATTTTTAGTCTGGCTATCATCTTGGCCGGCATATTCTCAATGAATGCTCAGAGTGCTATCCGCAAGGGTGACGTTTCGCTCAACGTCGGTATGGGTATCGGTTCTCATCACGGATCGGCTGCATTTATGCCCACCGTAGACCTCGAAACCGGTATCATCAGCGGTCTTGCCAGAGGCAAAGGCGCCATTACTGTAGGAGGTCGCCTTGGCTATTACGGCACGGAACACAATTTCTCTGCCATCATTTTAGCCACTAAATTAGACTTTCACTATCAGCTGGCTTCTGCTGTCGATGGCTATTTAGGTCAGACTCTGGGAGGCTATTTCGGCAATGATACCGGCTTTGTCTACGGTATTCATCTTGGAGCGCGCTTCTTTGTTCAGCGCGATTTTGCATTGTTCTCAGAAGTATCAGCCGGCTGGGCTACTCCCTTTGTCATGGTAGGGGTTAGTTTCAGGCTA","9.90","3.18","16734","MKKVIFSLAIILAGIFSMNAQSAIRKGDVSLNVGMGIGSHHGSAAFMPTVDLETGIISGLARGKGAITVGGRLGYYGTEHNFSAIILATKLDFHYQLASAVDGYLGQTLGGYFGNDTGFVYGIHLGARFFVQRDFALFSEVSAGWATPFVMVGVSFRL","1771070 1771543","TIGR ID: PG1684","hypothetical protein","Extracellular, Outer membrane, Inner membrane","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-20]?signal-peptide
tmhmm\"[5-23]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541322","","","","","","1","","15","PG1684" "PG1471.1","1771789","1771544","246","GTGCAACAGTCTCAAAAAAGAGAAGCTGCCTCTTTCGGAACTGTTCCGGGAGGCAGCCTCTTGTGGATTCATTTCAATTTCAATAGCAAATGGTTCTCTGGTTTTTCAGAAGATCTTGAGCTTTCCGTCCACAAAAGTCGTGCAAATCGAATAAACCGCCAAAGGAAAAAATATGTTGTTCAGCAAGTTCACCCGTATCCACATGTCGAAAGCGGTAGCAGAAAGGTTAAGAGGACTCTTCCGTTA","","","9490","VQQSQKREAASFGTVPGGSLLWIHFNFNSKWFSGFSEDLELSVHKSRANRINRQRKKYVVQQVHPYPHVESGSRKVKRTLPL","","NO TIGR ID corresponds to this gene.","hypothetical protein","Periplasm, Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","15","" "PG1472","1773091","1772312","780","ATGAAACTATTACTTTATCTCCTATTGGTCTTGTCGACTCTATCCCCGATGTATTCGCAAATGCTCTTCTCAGAGAATCTCACAATGAATATAGACAGCACCAAAACCATACAAGGAACGATATTGCCCGTACTGGATTTCAAAACCGAAAAGGAAAATGTGTTCACCTTCAAAAATACTGCCAATCTCAATCTGCTGATAAAGCACGGTCAAGTAATCAACTTAATTAATAAGCTTGAGTTTTCTACCTATGGCAATAAAGTAACCGTAAGTGGAGGATATGTACACACCGAATACCGCTATTTGTTGCATCATGTTTTTGAGGTTTATCCTTATGTCGAGTCGCAATGGGCAGAAAGTAGAGGAATGAAATATAAGGTTTCTACGGGATTACAGTCGCGTTATCGGCTGGTAAATAGTGATAACTGTCTCATGTTTGCAACATTGGGGGTATTTTTCGAATTCGAAAAGTGGGAACAGCCAGCCACTAGCCTCTTTGCAGGAACGTATGCATACAGCCGAAGTATCAAAAGCCACCTGTCTATCAGTTTCAGACATCGGTTGGGTGAACATTGGGAATTTACAACTACGGCTATTCACCAGGGAAAGCCTGACAGTTATTTTAAGAAGGCACGTTTTGGAGGAGCTATCGACCTCAAATACCATATCACACCTACGATAGGAATACGCGGGGCCTATCGGATCATCTACGATACTGCCCCTATTGTACCTGTGCGGAAAGATTACAACACCGTTGATGTTGGTATCGATATTTCGTTT","10.00","8.11","29908","MKLLLYLLLVLSTLSPMYSQMLFSENLTMNIDSTKTIQGTILPVLDFKTEKENVFTFKNTANLNLLIKHGQVINLINKLEFSTYGNKVTVSGGYVHTEYRYLLHHVFEVYPYVESQWAESRGMKYKVSTGLQSRYRLVNSDNCLMFATLGVFFEFEKWEQPATSLFAGTYAYSRSIKSHLSISFRHRLGEHWEFTTTAIHQGKPDSYFKKARFGGAIDLKYHITPTIGIRGAYRIIYDTAPIVPVRKDYNTVDVGIDISF","1773091 1772312","TIGR ID: PG1685","hypothetical protein","Outer membrane, Cytoplasm","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-19]?signal-peptide
tmhmm\"[5-23]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541323","","","","","","1","","15","PG1685" "PG1472.1","1773648","1773334","315","TTGATTAATTTGCGAATACTATCTTTGCTAAACACAAGAACTAAACATGGTAGTAAAATGAATCAAGAAAAATTTTTGTCAGTTCTCGGTTGGATTGCCACGGCAACAGCTATGGCGATGTATGTTTCTTATATTCCACAGATTGGTTCCAATCTCTCTGGACATAAAGGTGATTGGCTTCAGCCAATGGTCGCAGGTATCAACTGCGTACTGTGGGTAGGATATGGTTTTATTCGTAAGAAGAAGGATTGGCCAATCGTTATAGCCAACTTCCCAGGGATTGTCTGTGGCTTCTTGGCCTCTTTCACAGCCATG","","","11615","LINLRILSLLNTRTKHGSKMNQEKFLSVLGWIATATAMAMYVSYIPQIGSNLSGHKGDWLQPMVAGINCVLWVGYGFIRKKKDWPIVIANFPGIVCGFLASFTAM","","NO TIGR ID corresponds to this gene.","conserved hypothetical protein","Inner membrane, Extracellular","Residues 20-105 have 55% similarity to AE006296, L. lactis UNKNOWN PROTEIN .Residues 21-99 have 28% similarity to AF126024,H. sapiens stromal cell protein . ","
noIPR
unintegrated
unintegrated
signalp\"[1-37]?signal-peptide
tmhmm\"[25-45]?\"[59-79]?\"[84-104]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Wed Feb 28 14:00:11 MST 2001","Wed Feb 28 14:00:11 MST 2001","Wed Feb 28 14:00:11 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Feb 28 14:00:11 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Feb 28 14:00:11 MST 2001","","","","","","","1","","15","" "PG1473","1774294","1773908","387","ATGACTATTTTCAGCCGTATCATCGCAGGTGAAATTCCTTGCTACAAGATTGCCGAAAGCGATAAATTCTTCGCTTTCCTCGACATCAATCCCCTTGCCCTCGGGCATACTCTGGTTGTACCCAAACAAGAAGTGGACTACATCTTCGACATGAACGATGCTGATCTGGGTGAGATGACCATCTTCGCCAAGCAGGTAGCTGCAGCCATCAAACGTGCATTCCCCTGCCGGAAAGTGGGGATGACAGTGATAGGCCTTGAAGTACCTCATGCACACATCCACCTCGTACCTATGCAATCCGAAGCCGATATGCACTTCGGCCGTCAAAAGCTAACGCCCTCGCAGGAAGAGTTGGTGGCGGCCGCAGAGAAAATCCGTGCTGCATTC","6.30","-1.90","14328","MTIFSRIIAGEIPCYKIAESDKFFAFLDINPLALGHTLVVPKQEVDYIFDMNDADLGEMTIFAKQVAAAIKRAFPCRKVGMTVIGLEVPHAHIHLVPMQSEADMHFGRQKLTPSQEELVAAAEKIRAAF","1774294 1773908","TIGR ID: PG1687","possible cell-cycle regulation histidine triad (HIT) protein","Cytoplasm","Residues 2-128 have 40% similarity to AF265258,Rhodococcus sp. HIT-like protein.Residues 2-128 have 39% similarity to U15187, M. lepraeprotein kinase C inhibitor 1.Residues 3-128 have 30% simiarity to AL359773, L. major probable hypothetical hit-family protein. ","
InterPro
IPR001310
Family
Histidine triad (HIT) protein
PR00332\"[3-19]T\"[24-42]T\"[86-96]THISTRIAD
PIRSF000714\"[1-128]THIT
PTHR23089\"[17-117]THIT
PF01230\"[9-101]THIT
PS51084\"[3-106]THIT_2
noIPR
unintegrated
unintegrated
G3DSA:3.30.428.10\"[2-100]TG3DSA:3.30.428.10
SSF54197\"[1-129]TSSF54197


","BeTs to 14 clades of COG0537COG name: Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolasesFunctional Class: F,G,RThe phylogenetic pattern of COG0537 is amTKYQ-cebRhUJgpo-inxNumber of proteins in this genome belonging to this COG is 1","***** IPB001310 (HIT (Histidine triad) family) with a combined E-value of 4e-23. IPB001310A 3-42 IPB001310B 73-99","Residues 3-72 are 44% similar to a (PROTEIN HIT-LIKE HIT KINASE C HYDROLASE FAMILY) protein domain (PD001840) which is seen in YHIT_BORBU.Residues 72-128 are 47% similar to a (PROTEIN CY369.04C METAL-BINDING ZINC) protein domain (PD030129) which is seen in P71816_MYCTU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Fri Jun 15 11:25:32 MDT 2001","Wed Feb 28 14:14:20 MST 2001","Wed Feb 28 14:14:20 MST 2001","Wed Feb 28 14:14:20 MST 2001","Wed Feb 28 14:14:20 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Feb 28 14:14:20 MST 2001","-54% similar to PDB:1Y23 Crystal structure of a member of HIT family of proteins from bacillus subtilis (E_value = 3.0E_12);","","","Residues 2 to 101 (E-value = 1e-27) place PG1473 in the HIT family which is described as HIT domain (PF01230)","Tue May 15 15:04:45 MDT 2001","34541324","","","","","","1","","15","PG1687" "PG1474","1774779","1774312","468","ATGGCATACAATTATATTACACAGGAAGGGTACGATAAAATTTTGGCCGAATTGGCTGAACTTGAAAGCGTACAGCGACCCGAGATTTCTCGGCAGATAGCAGAAGCACGCGACAAAGGCGACCTATCCGAAAATGCCGAGTACGATGCGGCAAAGGAAGCCCAGGGAATCCTCGAAACGAAGATTGCCCAGCTAAAGGGGCTGATCGCCAATGCTCGTATCATTGACGAATCGCAAGTAAGCACCGAAAGCGTTCAGATTCTGAACAAGGTGACGATCAAGAACGTAAAGACAGGTGTCGTGATGGCCTATACCCTCGTTTCCGATTCGGAAGCCAACCTCAAAGAGAACAAAATCTCTGTCAATACACCCATCGCACAGGGACTGATGGGTAAAAAAATCGGAGATTTGGTTTCGATCAAAGTGCCGAGTGGATTGGTAGAATTTGAGATTATAGACATTACCTTA","4.50","-6.99","17022","MAYNYITQEGYDKILAELAELESVQRPEISRQIAEARDKGDLSENAEYDAAKEAQGILETKIAQLKGLIANARIIDESQVSTESVQILNKVTIKNVKTGVVMAYTLVSDSEANLKENKISVNTPIAQGLMGKKIGDLVSIKVPSGLVEFEIIDITL","1774935 1774312","From GenBANK gi:121607: GreA is necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3' terminus. GreA releases sequences of 2 to 3 nucleotides.TIGR ID: PG1688","transcription elongation factor (GreA) (trancript cleavage factor)","Cytoplasm","Numerous significant hits to transcription elongation factor (greA) in gapped BLAST. Residues 6-154 are 45% similar to (U32812) of Haemophilus influenzae. Residues 6-154 are 44% similar to (AL139074) of Campylobacter jejuni. Residues 6-154 are 46% similar to (U01376) of Escherichia coli.","
InterPro
IPR001437
Domain
Transcription elongation factor, GreA/GreB region, prokaryotic
PD004918\"[91-154]TGreA_GreB
G3DSA:1.10.287.180\"[1-75]TGreA_GreB_reg
PF01272\"[88-156]TGreA_GreB
PF03449\"[1-74]TGreA_GreB_N
PS00829\"[17-48]TGREAB_1
SSF46557\"[2-79]TGreA_GreB
InterPro
IPR006359
Domain
Prokaryotic transcription elongation factor GreA
TIGR01462\"[5-155]TgreA
InterPro
IPR012243
Family
Prokaryotic transcription elongation factor GreA, GreB
PIRSF006092\"[1-156]TGreA
noIPR
unintegrated
unintegrated
SSF54534\"[79-154]TSSF54534


","BeTs to 10 clades of COG0782COG name: Transcription elongation factorFunctional Class: KThe phylogenetic pattern of COG0782 is ------v-EbRHujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB001437 (Prokaryotic transcription elongation factor GreA/GreB) with a combined E-value of 5.8e-34. IPB001437A 25-64 IPB001437C 104-136","Residues 6-154 are 45% similar to a (ELONGATION FACTOR TRANSCRIPTION GREA) protein domain (PD004918) which is seen in GREA_HAEIN.","","Thu Jun 14 12:05:40 MDT 2001","","Thu Jun 14 12:05:40 MDT 2001","Thu Jun 14 12:05:40 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:05:40 MDT 2001","Thu Jun 14 12:05:40 MDT 2001","","Tue Jun 26 10:28:50 MDT 2001","Tue Jun 26 10:28:50 MDT 2001","Tue Jun 26 10:28:50 MDT 2001","Thu Jun 14 12:05:40 MDT 2001","Tue Jun 26 10:28:50 MDT 2001","Tue Jun 26 10:28:50 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Jun 14 12:05:40 MDT 2001","-66% similar to PDB:1GRJ GREA TRANSCRIPT CLEAVAGE FACTOR FROM ESCHERICHIA COLI (E_value = 9.9E_31);-61% similar to PDB:2ETN Crystal structure of Thermus aquaticus Gfh1 (E_value = 6.4E_14);-60% similar to PDB:2EUL Structure of the transcription factor Gfh1. (E_value = 3.2E_13);-60% similar to PDB:2F23 Crystal structure of GreA factor homolog 1 (Gfh1) protein of Thermus thermophilus (E_value = 3.2E_13);","","","Residues 1 to 74 (E-value = 5.9e-30) place PG1474 in the GreA_GreB_N family which is described as Prokaryotic transcription elongation factor, GreA/GreB, N-terminal domain (PF03449)Residues 88 to 156 (E-value = 2.1e-13) place PG1474 in the GreA_GreB family which is described as Prokaryotic transcription elongation factor, GreA/GreB, C-terminal domain (PF01272)","Tue Jun 26 10:28:50 MDT 2001","34541325","","","","","","1","","15","PG1688" "PG1475","1775866","1775267","600","ATGATCATCAAGATTTACCCCGACAATCCCAACAGACGAGAATTGGAACGTGCCGTATCGGCTCTTCGCGACGGCAAAGTGATCATCTATCCCACCGAAGTTGGGTATGCCTACGGATGCGATGCCCTTCAGAATCGGAGCGTGGAGCGGATATGCGAGCTGAAAGGTGTGGATCCTCGGCGCAAAAGCCTCTCGATCATGTGTTCGGACATGAGCATGGCAGCCGAATACTGCCGTATAGACAACGAGGCATTCCGCTATATGAAGGACAACCACATGCAGAAATATACCTTCGTCCTACCGGCCGGAAGTTCGCTGCCTAAGGTTTTCAAGAATCGAAAGCAGGTAGGTATCCGCCTGGCTCTTCATCCACTGACCCGTCTTCTTGCCGAATCGCTCGGCAGTCCTTTGCTGACCGGCTCGCTCCCCCTCGATCCTGAAACGCCCGAATACGCTTCGGATCCCGAACTGATCGAAGAGCGCTATGGCCTTACGGTAGAAATGGTACTCGACGGAGGAATCATCCCGTTCGAACAGACCACGGTGGTCGACTGCACCGTCTCGCCCTACACCATTCTGCGCGAAGGCGGAAGCAAGCCT","5.90","-1.75","22432","MIIKIYPDNPNRRELERAVSALRDGKVIIYPTEVGYAYGCDALQNRSVERICELKGVDPRRKSLSIMCSDMSMAAEYCRIDNEAFRYMKDNHMQKYTFVLPAGSSLPKVFKNRKQVGIRLALHPLTRLLAESLGSPLLTGSLPLDPETPEYASDPELIEERYGLTVEMVLDGGIIPFEQTTVVDCTVSPYTILREGGSKP","1775866 1775267","TIGR ID: PG1690","possible translation factor","Cytoplasm","Residues 5-196 have 35% similarity to F64874, E. coli probable translation factor yciO.Residues 5-200 have 32% simialrity to AE004197, V. cholerae conserved hypothetical protein.Residues 5-196 have 34% simialrity to I64168, H. influenzae probable translation factor HI1198.","
InterPro
IPR004388
Domain
Sua5/YciO/YrdC/YwlC
TIGR00057\"[5-199]TSua5_YciO_YrdC
InterPro
IPR006070
Domain
SUA5/yciO/yrdC, N-terminal
PF01300\"[20-196]TSua5_yciO_yrdC
PS51163\"[12-198]TYRDC
InterPro
IPR012200
Family
RNA-binding protein, YrdC
PIRSF004931\"[6-200]TRNA-binding_YrdC
noIPR
unintegrated
unintegrated
G3DSA:3.90.870.10\"[2-200]TG3DSA:3.90.870.10
PTHR17490\"[25-196]TPTHR17490
SSF55821\"[1-196]TSSF55821


","BeTs to 11 clades of COG0009COG name: Putative translation factor (SUA5)Functional Class: JThe phylogenetic pattern of COG0009 is amtkyqvCEbrH----olinxNumber of proteins in this genome belonging to this COG is 2","***** IPB000666 (SUA5/yciO/yrdC family) with a combined E-value of 4.1e-15. IPB000666A 27-58 IPB000666B 109-121 IPB000666C 179-196","Residues 17-196 are 34% similar to a (PROTEIN HYPF HYDROGENASE ZINC-FINGER) protein domain (PD002209) which is seen in YCIO_ECOLI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon Jun 4 17:45:39 MDT 2001","Mon Jun 4 17:45:39 MDT 2001","Thu Mar 1 09:30:55 MST 2001","Thu Mar 1 09:30:55 MST 2001","Thu Mar 1 09:30:55 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No significant hits found using local BLAST search.","Thu Mar 1 09:30:55 MST 2001","Thu Mar 1 09:30:55 MST 2001","-57% similar to PDB:1K7J Structural Genomics, protein TF1 (E_value = 2.3E_29);-57% similar to PDB:1KK9 CRYSTAL STRUCTURE OF E. COLI YCIO (E_value = 2.3E_29);-46% similar to PDB:1JCU Solution Structure of MTH1692 Protein from Methanobacterium thermoautotrophicum (E_value = 1.4E_15);","","","Residues 20 to 196 (E-value = 3.2e-26) place PG1475 in the Sua5_yciO_yrdC family which is described as yrdC domain (PF01300)","Tue May 15 15:06:42 MDT 2001","34541326","","","","","","1","","15","PG1690" "PG1476","1776577","1775876","702","ATGAAAGACTCCTTCCACTTCGGCAAATCGGAAAGCATTATCAGCATCTTGCTCCTGCTGATGGTCATCGTCGGGCTATTCATCTTCAAAGCAAGGCCGGCCAGTGGCAATGCACCTGTGGCCGAAGCTGTTCAAACGTCGGCTGATGAACCGGGTAGAAAAGAAGAAAAGAAGAATTACGTCAGGCCTTATTCATCCTCGGAACAATCGCGCAAGAAAAGCCGCGACAGCATCGTGACCGATGCGGACTACGTGGGGCCTCCTGTCAGAGAAGCCTATGCCCGATCGGCCGATAAATTTCCTCGCGGTACGGTGATCGACCTGAATGCAGCCGATTCGGCTACCCTTACTCGCATACCCGGGATAGGGCCTACATTCGCTCGCCGCATCGTATCCTACCGCCGACAGCTTGGCGGCTACTATACCGTGCTACAGCTACAGGAGGTTTACGGCATGGACTACGAACGCTTTTGCGCTCTGAGACCATGGTTCAAAATAGGAATCAAGCCGGATCGTATCGATCTAAAAGGAGTCGTAGGAGATAGTATCCTTCGGCATCCTTATATTAACTATAAACAACGGGCCGAGATCAAACGGCTGCTACGCAGCAGCCAATGGCAGGGTAGCTGGGTACAACTACTGAAGCTACCGACCTTCACAAAAGAAGACAGTATAAGACTTTCACCCTATTTCGATATACAC","10.60","12.67","26637","MKDSFHFGKSESIISILLLLMVIVGLFIFKARPASGNAPVAEAVQTSADEPGRKEEKKNYVRPYSSSEQSRKKSRDSIVTDADYVGPPVREAYARSADKFPRGTVIDLNAADSATLTRIPGIGPTFARRIVSYRRQLGGYYTVLQLQEVYGMDYERFCALRPWFKIGIKPDRIDLKGVVGDSILRHPYINYKQRAEIKRLLRSSQWQGSWVQLLKLPTFTKEDSIRLSPYFDIH","1776577 1775876","See ABC Transporters Analysis.TIGR ID: PG1691","conserved hypothetical protein; possible DNA uptake-related protein","Cytoplasm, Periplasm","Residues 40-161 have 31% similarity to AL136518, S. coelicolor putative DNA-binding protein.","
InterPro
IPR003583
Domain
Helix-hairpin-helix DNA-binding, class 1
SM00278\"[114-133]THhH1
InterPro
IPR010994
Domain
RuvA domain 2-like
SSF47781\"[76-136]TRuvA_2_like
noIPR
unintegrated
unintegrated
PTHR21180\"[99-232]TPTHR21180
PTHR21180:SF3\"[99-232]TPTHR21180:SF3


","BeTs to 5 clades of COG1555COG name: DNA uptake protein ComEA and related DNA-binding proteinsFunctional Class: LThe phylogenetic pattern of COG1555 is ------vcebrh---------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Fri Sep 10 14:27:40 2004","Fri Sep 10 14:27:40 2004","Thu Mar 1 09:41:24 MST 2001","Thu Mar 1 09:41:24 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 09:41:24 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Sat Jun 2 17:31:50 MDT 2001","34541327","","","","","","1","","15","PG1691" "PG1477","1777266","1776610","657","ATGATTATAGAAGCTCGCAACATTCGCAAGAGTTTCGGCTCTCTGGAAGTACTGAAAGGGGTAGATATTGCCATCGACCGTGGGGAGATAGTCTCCATCGTCGGCACAAGCGGTGCCGGAAAGACCACGCTGCTGCAAATTCTGGGTACGCTCGATCGGGCGGACAGCGGAGAATTGCGTATCGACGGCACCGATATAATGGGCATGAACAATCGGAAGCAAGCCGAATTTCGCAATAGACGGCTGGGATTCATCTTCCAATTTCACCGATTGCTACCCGAATTTACAGCTCTGGAAAACGTGATGATACCGGCTCTGATAGCCGGAAAGAGCCGAAAAGAGGCTTCTTGCGAAGCTGAACGGCTGCTTTCCGATCTGAACCTCAGCGACAGAGCTTCGCATAAGCCATCGGAACTCTCCGGCGGTGAGAAGCAGCGGATAGCCGTGGCACGTGCTCTGGTGAACCATCCGGCCATCATCCTTGCCGACGAACCGAGCGGCAGTCTGGACTCAGCGCACAAAGAAGAGCTGCACGCTCTCTTCTTCCGTCTGTGCCGAGAGATGGGACAGACCTTCCTGATAGTCACCCACGATGAGAAATTGGCAGCCGGCACCGACCGCATCCTCCACATGCGCGACGGGCTACTCTTCTCGGAA","6.90","-0.40","24173","MIIEARNIRKSFGSLEVLKGVDIAIDRGEIVSIVGTSGAGKTTLLQILGTLDRADSGELRIDGTDIMGMNNRKQAEFRNRRLGFIFQFHRLLPEFTALENVMIPALIAGKSRKEASCEAERLLSDLNLSDRASHKPSELSGGEKQRIAVARALVNHPAIILADEPSGSLDSAHKEELHALFFRLCREMGQTFLIVTHDEKLAAGTDRILHMRDGLLFSE","1777308 1776610","From GenBANK gi:9977674: LolD of V. cholera functions as part of an ATP-depepndent transport system responsible for the release of lipoprotiens to the outer membrane from the inner membrane. Such a release is dependent on the sorting-signal (absence of an asp at position 2 of the mature lipoprotein) and on LolA. Belongs to the ATP-binding transport family of proteins. See ABC Transporters Analysis.TIGR ID: PG1692","ABC transporter ATPase (lipoprotein releasing system ATP-binding protein LolD)","Inner membrane, Cytoplasm","This sequence is similar to CT152.Numerous significant hits in gapped BLAST to ABC transporters/LolD proteins; e.g. residues 16-216 are 52% similar to AE004263 of Vibrio cholerae, residues 2-219 are 48% similar to AE000682 of Aquifex aeolicus, residues 2-216 are 47% similar to U32830 of Haemophilus influenzae. In addition, residues 1-219 are 46% similar to P75957 of E. coli (E value 2e-48, see secondary evidence).","
InterPro
IPR003439
Domain
ABC transporter related
PD000006\"[138-180]TABC_transporter
PF00005\"[28-214]TABC_tran
PS00211\"[139-153]TABC_TRANSPORTER_1
PS50893\"[3-219]TABC_TRANSPORTER_2
InterPro
IPR003593
Domain
AAA+ ATPase, core
SM00382\"[27-215]TAAA
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[1-217]TG3DSA:3.40.50.300
PTHR19222\"[3-219]TPTHR19222
PTHR19222:SF32\"[3-219]TPTHR19222:SF32
SSF52540\"[2-216]TSSF52540


","BeTs to 14 clades of COG1136COG name: ABC-type (unclassified) transport system, ATPase componentFunctional Class: RThe phylogenetic pattern of COG1136 is AMt--QVCEBRHUJGPOLinxNumber of proteins in this genome belonging to this COG is 3","***** IPB001617 (ABC transporters family) with a combined E-value of 2.9e-12. IPB001617A 33-48 IPB001617B 140-151","Residues 80-200 are 27% similar to a (PROBABLE ABC TRANSPORTER ATP-BINDING) protein domain (PD133073) which is seen in Y4MK_RHISN.Residues 22-214 are 28% similar to a (ATP-BINDING TRANSPORT PROTEIN) protein domain (PD039360) which is seen in Y121_METJA.Residues 18-69 are 51% similar to a (ATP-BINDING TRANSPORT PROTEIN TRANSPORTER ABC) protein domain (PD000005) which is seen in O34697_BACSU.Residues 138-180 are 67% similar to a (ATP-BINDING TRANSPORT PROTEIN TRANSPORTER ABC) protein domain (PD000006) which is seen in Q9Z8T6_BBBBB.Residues 78-136 are 61% similar to a (ATP-BINDING TRANSPORT PROTEIN TRANSPORTER) protein domain (PD007972) which is seen in O66646_AQUAE.","","Thu Jun 14 12:05:53 MDT 2001","","Thu Jun 14 12:05:53 MDT 2001","Thu Jun 14 12:05:53 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:05:53 MDT 2001","Thu Jun 14 12:05:53 MDT 2001","","Tue Jun 26 10:34:38 MDT 2001","Thu Jun 7 09:28:26 MDT 2001","Tue Jun 26 10:34:38 MDT 2001","Thu Mar 15 15:23:02 MST 2001","Fri Jun 15 23:04:34 MDT 2001","Fri Jun 15 23:04:34 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1477 is 24-44% similar to the following:PG0233 ABC transporter ATPasePG0254 ABC transporter/ATP-binding proteinPG0566 ABC transporter proteinPG0584 ferric enterobactin transport protein/iron(III) dic... PG0605 ABC transport system component; ATP-binding proteinPG0618 ABC transport component; ATPase componentPG0844 ABC transporterPG0903 ABC transporter ATP binding protein PG0921 oligopeptide ABC transporter PG1048 ABC transporter, ATP-binding proteinPG1049 ABC transporter proteinPG1084 ABC transporter ATP-binding proteinPG1211 ABC transporter (exact function unknown)PG1451 ABC transporter, ATP-binding proteinPG1497 ABC transporter protein, MSD-NBD fusion protein PG1533 ABC transporterPG1917 cell-division ATP-binding proteinPG1923 ABC transporter, ATP-binding proteinPG1929 ABC transporter protein,NBD-NBD fusion protein.","Fri Mar 16 08:25:49 MST 2001","Thu Mar 15 15:23:02 MST 2001","-64% similar to PDB:1F3O Crystal structure of MJ0796 ATP-binding cassette (E_value = 2.3E_41);-64% similar to PDB:1L2T Dimeric Structure of MJ0796, a Bacterial ABC Transporter Cassette (E_value = 5.1E_41);-57% similar to PDB:1OXS Crystal structure of GlcV, the ABC-ATPase of the glucose ABC transporter from Sulfolobus solfataricus (E_value = 1.4E_30);-57% similar to PDB:1OXT Crystal structure of GlcV, the ABC-ATPase of the glucose ABC transporter from Sulfolobus solfataricus (E_value = 1.4E_30);-57% similar to PDB:1OXU Crystal structure of GlcV, the ABC-ATPase of the glucose ABC transporter from Sulfolobus solfataricus (E_value = 1.4E_30);","","","Residues 28 to 214 (E-value = 1.1e-58) place PG1477 in the ABC_tran family which is described as ABC transporter (PF00005)","Fri Jun 15 23:04:34 MDT 2001","34541328","","","Yakushi,T., Masuda,K., Narita,S., Matsuyama,S. and Tokuda,H. A new ABC transporter mediating the detachment of lipid-modified proteins from membranes. Nat. Cell Biol. 2 (4), 212-218 (2000). PubMed: 10783239.","","Thu Jun 7 09:35:55 MDT 2001","1","","15","PG1692" "PG1478","1778012","1777266","747","ATGACCGAAGAAACGGAAAAGCCCCTCATGGACGGCAGTTGGGATGAGAGGACGGAGCTGCTCATAGGCACGGAAGCAGCCGACAAGCTCCGGCACTCGCATATACTGATCGTCGGCACCGGCGGAGTAGGCGGCTATGCAGCAGAGATGCTCTGCCGTGCAGGAGTGGGCAGACTGACTTTGGTGGATGCCGATGTAGTGAATCCGTCCAATATCAACAGGCAGATCATAGCCCTGCACAGTACCGTCGGCCGGTCTAAAGTAGAGGTGTTGGCCGATCGTCTGCAGGATATCAATCCACGGGTAAAGGTCTATCCGGTTGCCGCTTTTCTAAAAGATGAGGCTATGGAGGAGCTGCTGGATGCAGCCAAATACGACTTTGTGGTCGATGCCATCGATTCGCTCAGTCCGAAAGTATTCCTCATCGCCCTAAGCAAGCGGCGAGGCCTGCCGGTAATCAGTTCGATGGGAGCAGGAGCCAAACGCGATGCCTCGCTTATCGATGTGGCGGACATAGCCCGATCGTACAACTGCACGTTGGCACGTGCTGTCCGTAAGCGACTCCGCAAGCTGGGAATATCACGCGGCGTGCCGGTCGTATTCAGCAGCGAGTTGCCGGACGAAAGCTCTGTAATGGAGATCGAAGGAGAACGCTGCAAACGCTCCACAGCCGGTACCATATCCTATATGCCGGCTATTTTCGGTTGCAGGATAGCCGCTTATGTAATAGAAAAACTGACCGAACAA","6.80","-0.45","27106","MTEETEKPLMDGSWDERTELLIGTEAADKLRHSHILIVGTGGVGGYAAEMLCRAGVGRLTLVDADVVNPSNINRQIIALHSTVGRSKVEVLADRLQDINPRVKVYPVAAFLKDEAMEELLDAAKYDFVVDAIDSLSPKVFLIALSKRRGLPVISSMGAGAKRDASLIDVADIARSYNCTLARAVRKRLRKLGISRGVPVVFSSELPDESSVMEIEGERCKRSTAGTISYMPAIFGCRIAAYVIEKLTEQ","1778012 1777266","TIGR ID: PG1693","conserved hypothetical protein","Cytoplasm","Residues 17-248 have 35% similarity to AP001511, B. halodurans BH1255~unknown conserved protein.Residues 21-248 have 38% similarity to AE004546, P. aeruginosa conserved hypothetical protein.Residues 4-175 have 41% similarity to AE004301, V. cholerae HesA/MoeB/ThiF family protein.","
InterPro
IPR000594
Domain
UBA/THIF-type NAD/FAD binding fold
PF00899\"[31-167]TThiF
InterPro
IPR009036
Domain
Molybdenum cofactor biosynthesis
SSF69572\"[1-248]TMoeB
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.720\"[17-249]TG3DSA:3.40.50.720
PTHR10953\"[17-179]TPTHR10953


","BeTs to 3 clades of COG1179COG name: Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1Functional Class: HThe phylogenetic pattern of COG1179 is ----Y---eb-huj-------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 109-231 are 31% similar to a (PROTEIN TRANSMEMBRANE INTERGENIC REGION) protein domain (PD009548) which is seen in O13861_SCHPO.Residues 10-104 are 35% similar to a (HYPOTHETICAL 33.4 KD PROTEIN) protein domain (PD207389) which is seen in Q9Z5X6_BBBBB.Residues 29-96 are 45% similar to a (PROTEIN ENZYME UBIQUITIN UBIQUITIN-ACTIVATING E1) protein domain (PD000731) which is seen in YGDL_HAEIN.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Mar 1 09:51:32 MST 2001","Thu Mar 1 09:51:32 MST 2001","Thu Mar 1 09:51:32 MST 2001","","Thu Mar 1 09:51:32 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 22-159 have 29% similarity to PG0408, a molybdopterin synthase sulphurylase.","Mon Jun 4 16:53:46 MDT 2001","","-55% similar to PDB:1JW9 Structure of the Native MoeB-MoaD Protein Complex (E_value = 5.1E_19);-55% similar to PDB:1JWA Structure of the ATP-bound MoeB-MoaD Protein Complex (E_value = 5.1E_19);-55% similar to PDB:1JWB Structure of the Covalent Acyl-Adenylate Form of the MoeB-MoaD Protein Complex (E_value = 5.1E_19);-54% similar to PDB:1ZFN Structural Analysis of Escherichia coli ThiF (E_value = 2.2E_14);-54% similar to PDB:1ZKM Structural Analysis of Escherichia Coli ThiF (E_value = 2.2E_14);","","","Residues 31 to 167 (E-value = 5.9e-44) place PG1478 in the ThiF family which is described as ThiF family (PF00899)","Mon Jun 4 16:53:46 MDT 2001","34541329","","","","","","1","","15","PG1693" "PG1479","1779103","1778012","1092","ATGGTTCAGAAAAAACGCAAGAAAACGACCTACAGCAGATCCGCCTCCCACAGAAAAAAGAGGAATCGCACACGCAGAAGAGCTGTGATCCTTTGGATCACGGCACTACTCCTTATACCGATGGCTCTTGTTTCGCTGGGAGCTTACCTGCTACTGTCTCCTGCCGGCAATGCCCGGGAAAATACCTATATATATATCCGACCGACTACGACACTGACCGATGTAGAGCGACAGCTCCAGCAGAATACCCGACTGCGGAGGCCTTCGTTTTTCCATCTGGCAGCGCGATATTATAAATTAGAGGAAAAGCTCCGCCCGGGTCGCTATGGAATAGCTCCACGAATGAATACCAAGCAGATACTGGAGACTTTGGCACACGGAAAACAGTCGGCTGTACGCTTCCACCTCCGCCACGTCCGCACACAGGAGGATCTGATCGGAAGGATGACGGGCAAACTGATGATGAAGCCGGAAGAGCTTTCTTCCCTGTTGGCCGACTCCGCTTTCTGCGATTCGCTGGGATTCGATCCACACTCCATCCGCAGCCTTTTTCTGCCCGAAACATACGAAGTGGATTGGGACATTAGGCCAAAGGACTTGGTTCTGAGGCTGAAGAGATACTACGACCGCTATTGGACAGCAGAGCGACGGAGTCTGGCCGACTCATTGGGGCTGACGCCGATCCAAGTATCCATTATCGCATCCATCGTGGAGGAGGAGTCGGGAAAATCCGATGAATACCCGCAGATAGCCGGTCTCTATATCCGTCGCTTGCGTGAGGGGATGCTCTTGCAGGCCGATCCGACGGTGAAGTTTGCGATGGGAGACTTTTCCATCCGTAGGATCCTGAATGTCCATTTGCAGACGGATTCCCCGTACAACACTTATAAAAACGAAGGACTGCCTCCGGGCCCGATCCGGCTACCGCATACCGCGACCATGGACAGCGTGCTCCGAGCGGATCGGCATGGCTACCTGTATATGTGTGCCAAGGAGGACTTCTCCGGCCGTCACCGTTTTGCCCACACCTATGCCGAACACCAACGCAATGCGGCTCTCTATCGCAAAGCACTCAATGAAAGGGGGATCAAA","10.90","27.80","42265","MVQKKRKKTTYSRSASHRKKRNRTRRRAVILWITALLLIPMALVSLGAYLLLSPAGNARENTYIYIRPTTTLTDVERQLQQNTRLRRPSFFHLAARYYKLEEKLRPGRYGIAPRMNTKQILETLAHGKQSAVRFHLRHVRTQEDLIGRMTGKLMMKPEELSSLLADSAFCDSLGFDPHSIRSLFLPETYEVDWDIRPKDLVLRLKRYYDRYWTAERRSLADSLGLTPIQVSIIASIVEEESGKSDEYPQIAGLYIRRLREGMLLQADPTVKFAMGDFSIRRILNVHLQTDSPYNTYKNEGLPPGPIRLPHTATMDSVLRADRHGYLYMCAKEDFSGRHRFAHTYAEHQRNAALYRKALNERGIK","1779109 1778012","TIGR ID: PG1694","conserved hypothetical protein","Cytoplasm","Residues 59-361 have 27% similarity to AE004276, V. cholerae conserved hypothetical protein.Residues 26-360 have 29% similarity to AF294440, X. albilineans ORF340.Residues 104-364 have 31% similarity to AE003911, X. fastidiosa conserved hypothetical protein. ","
InterPro
IPR003770
Family
Aminodeoxychorismate lyase
PF02618\"[62-357]TADC_lyase


","BeTs to 8 clades of COG1559COG name: Uncharacterized BCR, YceG familyFunctional Class: SThe phylogenetic pattern of COG1559 is -----q--ebrhuj--ol--xNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 62-360 are 27% similar to a (PROTEIN LYASE CONSERVED) protein domain (PD009996) which is seen in Q9ZDK6_RICPR.","","Tue Jun 26 10:36:06 MDT 2001","","Tue Jun 26 10:36:06 MDT 2001","Tue Jun 26 10:36:06 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Tue Jun 26 10:36:06 MDT 2001","Tue Jun 26 10:36:06 MDT 2001","","","Fri Mar 9 14:33:58 MST 2001","Tue Jun 26 10:38:33 MDT 2001","Thu Mar 1 09:57:27 MST 2001","","Tue Jun 26 10:36:06 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 09:57:27 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 62 to 357 (E-value = 1.3e-50) place PG1479 in the ADC_lyase family which is described as Aminodeoxychorismate lyase (PF02618)","Tue Jun 26 10:36:06 MDT 2001","34541330","","","","","","1","","15","PG1694" "PG1479.1","1779918","1779634","285","ATGGATATTTCTTTACCGAGTAGATCAAAGTGCAACAGATGGGATAAACAGCAGAGATTTCGGGGCATCGGGGTTGGGCTTTTTTGCTACATTTGCAGAGCGATAGCCAGCTCTCAAAATAATAAGGAGTATAACGGAGAAGGCTTATCCGAAGAAGATAATTACGTGAATAACAGATATATGGCAATAGATATGCATACGGATTTCTCTTTTAGCAACAATCCATTGAGACGATTCATTGGGACTGATATAAGCGTCTCTCATCGCAGTATTCGGATGAGGAGC","","","11058","MDISLPSRSKCNRWDKQQRFRGIGVGLFCYICRAIASSQNNKEYNGEGLSEEDNYVNNRYMAIDMHTDFSFSNNPLRRFIGTDISVSHRSIRMRS","","NO TIGR ID corresponds to this gene.","hypothetical protein","Periplasm, Cytoplasm","No hit found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","15","" "PG1480","1780116","1781150","1035","TTGTCAAATGCAAAGAGGTTACTCGTGAGCGATATGAAGATGGGGGTCGACATTAGTGAGAATGAACTACTGCGTCAGTCCGAAGGACTTCTGCAAAGACTCCTCTTTGACCATACGACTCAGAGGAATATCTTTTGGGCTACAGATGACTATACTACACTGGGAGATGCGTACAAATACGATGCACCAATTACGACTGACAGCATTACAGGGGAGCATGACACTGTAATACAGCCCAGAGTGCTGAAGTCCAAGGAAGAACAAGCCAACCGCACCAAGGATAAAGCAGAAGTATTCACCCCCTCTTGGGTTTGCAACGCTCAGAATAATCTGATCGATGAGGCTTGGTTTGGTCGTAAGGATGTGTTTAATATTGAGCAACCCGAGACAAAGACTTGGATTGCAACTACCGAACCTATTACATTCCCCGAAGGTAAGACATGGAAAGACTATGTATGCTCCACGCGTATGGAAATTACTTGTGGCGAAGCTCCTTATCTTGTGAGCAGGTATGACACTACTACGGGGGAGTTTATCCCTATTCCTCAACGTATCGGTATGCTCGACAGAAAGCTTCGCATCATCTCAGAGAATACTTCAAGCACCGGCGAATGGCTCAAGATGGCTCAAAAGGCATATAAAAACATCTATGCTTATGAATGGCAAGGCGATAACCTGCTCCTTGCTCGTGAGGCACTACTAATCACCTTTATCGAGTATTATGAGGAGAAGTTCGGTAAGCGTCCCCTCGACAAATCCATTGAGTATATTGCCTATATTATCTCTTGGAATGTCTGGCAGATGGATGGGCTCAAGGGAGTCGTCCCTAATAGTTGCACACATGGTGTGTCCGTCCTCCCGGACGACCTCTTTGAGTCTATGGAGGAGCTGATACTCTGCCCCGGCTGCCAAAACGAAAGCATCAAAAAGCATAACGGCACGTACTGCCTCATTCGAGACTGGGGCTGTAAAGACCCCAAGACGGGAGAGAATAATCGCAAAATTCGATTCGTTGATCTGATAAAGAATAATATA","5.10","-8.38","39806","LSNAKRLLVSDMKMGVDISENELLRQSEGLLQRLLFDHTTQRNIFWATDDYTTLGDAYKYDAPITTDSITGEHDTVIQPRVLKSKEEQANRTKDKAEVFTPSWVCNAQNNLIDEAWFGRKDVFNIEQPETKTWIATTEPITFPEGKTWKDYVCSTRMEITCGEAPYLVSRYDTTTGEFIPIPQRIGMLDRKLRIISENTSSTGEWLKMAQKAYKNIYAYEWQGDNLLLAREALLITFIEYYEEKFGKRPLDKSIEYIAYIISWNVWQMDGLKGVVPNSCTHGVSVLPDDLFESMEELILCPGCQNESIKKHNGTYCLIRDWGCKDPKTGENNRKIRFVDLIKNNI","1780116 1781150","TIGR ID: PG1696","conserved hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04 with exception of a strong similarity to BT4014.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon Jan 5 09:44:02 2004","Mon Jan 5 09:44:02 2004","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Jan 5 09:44:02 2004","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541332","","","","","","1","","15","PG1696" "PG1481","1781163","1785134","3972","ATGGCGACCTTTGAATCTTCTCTCAAACCCCGCCTTATCTATGTGTTTGCTATTGCAGATGCCCGGCACGAGGGTAGCCTCAAAATAGGAGAAACCACCCTTAACGATGATGTGGGTTCGGCTTCCACCGAACCGAATAGTGAGGTGCTCAACAAAGCAGCCAAAGCTCGTATCGACCAGTATACCAAAACTGCAGGTATCGGTTACGAATTGCTATATACCGAGCTAACCATTTATTTCTCAGGTGGACGTGTCTGCTCATTCAACGACAAGCAAGTGCATAGCGTACTGGAGCGTTCAGGCGTCAAACGCAAGTCTTTTGCAGGAGCTACCGAGTGGTATTCTTGCGACTTAGCAACCGTCAAGCGTGCCATCTCAGCCATCAAGGAGGGCAAGGATAGCTTGGGGGCAAGCGAAGTGACGCTATCTGACAACCCCATTATTCTGCGTCCTGAGCAGAAAGAAGCCATCGAGCGCACGCTCAAGCAGTTCCGCAAAGGAAATAAGATGCTGTGGAATGCCAAGATGCGTTTTGGCAAAACGCTCTGTGCCCTGCGTGTTGCCAAAGAGATGGAAGCTGTGCGTACGATTATCATCACGCATCGCCCGGTGGTAGATGCCAGCTGGTTTGAGGACTTTGGTAAAACCTTCTACGACCGTCCTGAGTGGCACTATGGCTCCCGTAGCAAAGGTGAGAGCTTCGCTTCTCTCGAAAAGCTTGCTTCCCAAGGGAAAAAGTGTGTCTATTTTGCCTCTATGCAAGATATGCGTGGTTCGAAGGACGTAGGAGGTAAGTTTGACAAAAACAACGAAGTCTTCTCTACTTCATGGGATTTAGTGATTGTGGACGAGGCACACGAAGGGACACAGACCGAGCTGGGGAAAGCCGTATTAGGTCAGTTGATGGGTAAGGATACAAAGGCATTACATCTATCGGGAACACCTTATAACCTCTTCGATCAGCACAAAGAGGAGGAAGTCTTTACGTGGGACTATGTCATGGAACAACAAGCCAAAATCGATTGGGAAATCAATCATCTTGGCGACACTAACCCCTATGCCTCACTCCCGGCCATACATATCTATACCTATGATCTCGGTCGTCTCATAAGTGAATATAGCGATGAGGAGAAGGCTTTCAACTTCCGAGAGTTTTTCCGTACTCGGGAGGATGGTTCTTTCGTTCACGAGGGTGACATAGACCGTTTCTTGTCTTTACTCTGCCGAGAAGACGAAGAGGCTCTATACCCGTACTCCAACGAACATTTTCGCCAAATATTTCGACACACACTCTGGATTCTGCCGGGGGTACGAGCCGCCAAGGCCCTGAGTAAGAAACTTAGCAAACACCCTATCTTCGGTCTCTTTAAGGTGGCCAATGTGGCCGGGGACGGAGATGATGAGGAGGAGGAAAGCAGAGATGCCCTTGAGTTAGTCAATCAAGCCATCGGCAAAGACCCGGATGAGACTTATACAATCACCCTCTCATGCGGACGACTGACTACCGGTGTAAGCATTAAGCCTTGGACCGGCGTCTTCATGATGGCCGGTTCATATAGTACCTCCGCATCCGGCTATATGCAAACTATCTTCCGCGTACAAACGCCTTATACCCACAATGGGTACATGAAGACAGAGTGTTATGCCTTCGACTTTGCTCCCGACCGCACCCTCCGTGTCCTTGCCGAGGCTGCCAAGGTATCATACAAAGCAGGCAAACAGAGCGAGAGTGATCGCAAGCTGTTGGGGGATTTTCTCAACTTCTGTCCCATCATCTCTATAGAAGGCAGCCGGATGAAGCCTTACGATGTCAATACGATGCTCGGACAGCTCAAGCGCGCACAAATAGAAAAAGTGGTGCAGGATGGCTTTGAGAATGGGGCACTCTATAATGACGAGCTACTCAAACTTACCGAGGTAGAGCTGCACGACTTCGACGAACTCAAAGGTATCATTGGCAAAACCAAGGCGATGGCAAAGTCCGGTGACATAGATATCAATCACCAAGGTCTCACCCATGAGCAATACGAGGAGAAAGAGCGACTGGAGAAGAGGAAAAAGAAAGGCCTAACACCCGAAGAGAAAAAACGACTGGACGAACTGAAAGCCAAAGGCGACCAACGCCGAGAGGCTATTTCTATCCTCCGAGGCATATCCATCCGCATGCCTCTGATGCTCTATGGGGCTGAAATGAAGGATGAGGATAAGGAGCTGACCATTGACAATTTTGCCAATCTCGTCGATGAGCAGTCTTGGCAGGAATTTATGCCTCGCGGCGTTACCAAGGCGGTCTTTCGTCGCTTCAAGCGTTACTACGACCCCGACATATTTCGTGAGGCGGGGAAGCGCATCCGTGAGATGGCTCGTATGGCGGATAAGTTCACCATCGAGGAGCGTATAGGGCGTATTGCTTCTATCTTCTCTACTTTCCGCAACCCCGACAAAGAAACAGTACTGACTCCTTGGCGTGTGGTGAACATGCATCTCGGGGACAGCATAGGTGGCTACTGCTTTATGAGCGAAGACTTCTCTACTCCCATTGCATTGCCTCGCTACATCGAGCATCAGGGTATAACGAATGAGGTATTCCACCCCAAAAGCATCATTTTGGAGATCAACTCCAAGAGCGGTCTCTATCCCCTTTATGCTGCCTATAACATTTATCGTACAAGGGTAGAGGAAGCTCGAGAGAAGTATGGCGACGTAACACGTGCCTTTGCCTTACAACTGTGGGACAGGACGCTCGAAGAAAACATTTTCGTGGTCTGCAAAACCCCTATGGCCCGCTATATCACGATGCGTACGCTACGGGGTTTCCGTGATGTAGTGACTCATACAGAGCATTATCCCGATCTGATAGAAAACATTACCAGCCAGCCCGACAGCGTGGTCAATATGCTACGTTCGGGCAAAAGGTTCTGGAAAATCAACAACGACGAAAATATGAAGATAGACGCTATTATAGGCAACCCACCGTACCAAGTGATGAATCAAGGCAAGGGTAATGGCTCAGACCCCATCTACCACAAATTCTTTGACCTCGCAATGGTACTTGCTCCACAGGGTACACTTATTCATCCTGCTCGTTTTCTTTTCAACGCAGGTAAAACGCCCAAAGAATGGAATGAAAAGATGCTTTCGGACAAGCATTATAGAGTAGTCGATTATTGGCCTAATAGTGCGGAGGTCTTCCCTACTGTAGATGTAAAAGGAGGAATCGCAACCTCATACTGGAACAAGAAAATGATTCTTGGACCGATTGGGATGTTTTCGGCCTTTGATGAGCTTCATCATATTCTGTATAAAGTAGAGCAAACCAATCCTCTACCATTTTCAAACCTTGTTGCACCTCGAGAGCTCTATCGTATTACAGACGAACTCTACCAAGAGCATCCCGATTTGAACGGAAGACAAAGTGCAGGGCACAAGTACAGCTTTGGTGCCAATATCTTTGATGTGTTTCCTGAGGTTTTCTTTGATGAATACCCTCAAGGAAGGGAAGAGAAGATGGCATGTATCTATGGACGAGCCAATAAGCAAAGATGCTATAAGTGGTGTAAGCGTAGTTACATCACCCATCCAGAGAACTTTGCCAAGTACAAGGTGATTATCCCCAAGACAAATGGCTCGGGGGCAATCGGTGAAGTACTCAGCACACCAATTATTGGCACGCCGATTATGGGTTATACTGATACCTTCATTAGTATTGGGGCATTCGACACCCGAAACGAGGCAGAGGCTTGTCTGCGCTATGTGAAGACGAAGTTTGCTCGCACGATGCTGGGTATCCTCAAGGCAACGCAAGATAACCCCAAAGAAACTTGGCGATTAGTCCCCCTGCAAGACTTCACAGCAGAATCGGACATCGATTGGACACAGCCGGTGGCGGAAATTGATCGCCAACTCTACCGCAAATACGGCTTAAACGAAAGCGAAATCGCCTTTGTCGAAGAGAAAGTCCGCCCGATGGAC","6.80","-3.25","151646","MATFESSLKPRLIYVFAIADARHEGSLKIGETTLNDDVGSASTEPNSEVLNKAAKARIDQYTKTAGIGYELLYTELTIYFSGGRVCSFNDKQVHSVLERSGVKRKSFAGATEWYSCDLATVKRAISAIKEGKDSLGASEVTLSDNPIILRPEQKEAIERTLKQFRKGNKMLWNAKMRFGKTLCALRVAKEMEAVRTIIITHRPVVDASWFEDFGKTFYDRPEWHYGSRSKGESFASLEKLASQGKKCVYFASMQDMRGSKDVGGKFDKNNEVFSTSWDLVIVDEAHEGTQTELGKAVLGQLMGKDTKALHLSGTPYNLFDQHKEEEVFTWDYVMEQQAKIDWEINHLGDTNPYASLPAIHIYTYDLGRLISEYSDEEKAFNFREFFRTREDGSFVHEGDIDRFLSLLCREDEEALYPYSNEHFRQIFRHTLWILPGVRAAKALSKKLSKHPIFGLFKVANVAGDGDDEEEESRDALELVNQAIGKDPDETYTITLSCGRLTTGVSIKPWTGVFMMAGSYSTSASGYMQTIFRVQTPYTHNGYMKTECYAFDFAPDRTLRVLAEAAKVSYKAGKQSESDRKLLGDFLNFCPIISIEGSRMKPYDVNTMLGQLKRAQIEKVVQDGFENGALYNDELLKLTEVELHDFDELKGIIGKTKAMAKSGDIDINHQGLTHEQYEEKERLEKRKKKGLTPEEKKRLDELKAKGDQRREAISILRGISIRMPLMLYGAEMKDEDKELTIDNFANLVDEQSWQEFMPRGVTKAVFRRFKRYYDPDIFREAGKRIREMARMADKFTIEERIGRIASIFSTFRNPDKETVLTPWRVVNMHLGDSIGGYCFMSEDFSTPIALPRYIEHQGITNEVFHPKSIILEINSKSGLYPLYAAYNIYRTRVEEAREKYGDVTRAFALQLWDRTLEENIFVVCKTPMARYITMRTLRGFRDVVTHTEHYPDLIENITSQPDSVVNMLRSGKRFWKINNDENMKIDAIIGNPPYQVMNQGKGNGSDPIYHKFFDLAMVLAPQGTLIHPARFLFNAGKTPKEWNEKMLSDKHYRVVDYWPNSAEVFPTVDVKGGIATSYWNKKMILGPIGMFSAFDELHHILYKVEQTNPLPFSNLVAPRELYRITDELYQEHPDLNGRQSAGHKYSFGANIFDVFPEVFFDEYPQGREEKMACIYGRANKQRCYKWCKRSYITHPENFAKYKVIIPKTNGSGAIGEVLSTPIIGTPIMGYTDTFISIGAFDTRNEAEACLRYVKTKFARTMLGILKATQDNPKETWRLVPLQDFTAESDIDWTQPVAEIDRQLYRKYGLNESEIAFVEEKVRPMD","1781163 1785134","TIGR ID: PG1697","restriction endonuclease","Cytoplasm","Residues 23-1324 have 44% similarity to Y12736, Lactococcus lactis subsp. cremoris restriction endonuclease. This sequence is also strongly orthologous to BT4013.","
InterPro
IPR002052
Domain
N-6 Adenine-specific DNA methylase
PS00092\"[987-993]?N6_MTASE
InterPro
IPR006935
Family
Type III restriction enzyme, res subunit
PF04851\"[146-317]TResIII
InterPro
IPR011639
Domain
Restriction endonuclease, Eco57I
PF07669\"[982-1082]TEco57I
InterPro
IPR014001
Domain
DEAD-like helicases, N-terminal
SM00487\"[145-343]TDEXDc
InterPro
IPR014021
Domain
Helicase superfamily 1 and 2 ATP-binding
PS51192\"[161-333]THELICASE_ATP_BIND_1
noIPR
unintegrated
unintegrated
SSF52540\"[147-335]TSSF52540
SSF53335\"[983-1056]TSSF53335


","BeTs to 4 clades of COG0553COG name: Superfamily II DNA/RNA helicases, SNF2 familyFunctional Class: K,LThe phylogenetic pattern of COG0553 is a--kY-vceBrh--gp--IN-Number of proteins in this genome belonging to this COG is 3","No significant hit to the Blocks database.","Residues 982-1073 are 53% similar to a (ENDONUCLEASE PROTEIN RESTRICTION PLASMID C09_ORF422) protein domain (PD025046) which is seen in O53070_LACLC.Residues 23-282 are 42% similar to a (RESTRICTION ENDONUCLEASE ENDONUCLEASE) protein domain (PD131934) which is seen in O53070_LACLC.Residues 700-958 are 45% similar to a (RESTRICTION ENDONUCLEASE ENDONUCLEASE) protein domain (PD146390) which is seen in O53070_LACLC.Residues 1076-1324 are 49% similar to a (RESTRICTION ENDONUCLEASE ENDONUCLEASE) protein domain (PD139246) which is seen in O53070_LACLC.Residues 283-699 are 43% similar to a (ENDONUCLEASE C09_ORF718 PROTEIN RESTRICTION PLASMID) protein domain (PD146389) which is seen in O53070_LACLC.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Mar 1 10:01:58 MST 2001","Mon Jan 5 09:42:13 2004","Thu Mar 1 10:01:58 MST 2001","","Thu Mar 1 10:01:58 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 10:01:58 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue May 15 15:09:57 MDT 2001","34541333","","","","","","1","","15","PG1697" "PG1482","1788046","1786241","1806","ATGCTTAGTCCTAAGAACTATCAGTATTATCCTGCGGCGCTCCGACAGCTCTATGAAGAGCTTGACGGTGCGCCGCAAGCTTTTGAGGGAGGAGAGTCTCCCTCTCGACCTGTTATTGGTTTGACAGCGAATTATAATACCTCGGGCTCGTGTATTGCCAGAGCCTATACCGAGTCTGTAATACGTGCGGGAGGTTTACCCTTACTTATCCCTTTGACTACGGATATAGAGGTCATACGTCATTATGCCACGTTCATCGATGGGCTGATTCTTTCCGGTGGGGACGATTTACTCCCGTCCTATTTGGGAGAAGACCCCATTCCCACACTGGGCGAAGTCAATCCCGAGCGAGATCGGGGCGAACTGCTATTGGTGGCAGAAGCCACTCGCCGCAATGTGCCGATCCTCGGTATTTGCCGGGGGCATCAACTCCTTGCGACAGCTTTCGGCGGAGGAATGTATCAGGATATATATGCCCAGTCGGAAAATCCGGTAGGGCATAATCCGAAAATCCCCATATCGTTTGCGGCACACCAAGTCCGTTTACAGGGCGATTCCGTCTTGGCACGAATACTTGGCCTAAGCGATGGCGAGCTGCTGGGTGTCAATAGCCTGCATCATCAGGCAGTCAGCAGAGTGCCGAAACCTTTCCGCGTGACAGCCCTTTCTTCCGATGGCGTTATCGAGGCTATGGAAGCCTATCCGGAGAAACCTATCCTGTCGGTACAATGGCATCCGGAGCAAATGGCCTATGCCGGTGACACCCGTCAGCAGCAATTGTTCGAGCATTTGGTCGCCGAGGCTTCTCTCTTTGCCCAAGCCAAAGCGGTACACCGCTCCGTAATTGTGCTGGATTCGCATGTGGACACGCCCATGCACTTCTGTCCGGAATTTGATTTTACGAAAAGAGGAAATACACTGGTCGATGCTCCGAAGATGCGAGAGGGGCTTGTCGATGCGTGTGTAATGGTAGCATATCTGCCGCAAGGTGAGCGAGACGATGCTTCTCTGAAGCAGGCCACGGACTATGCCACAGGTAAGCTGGAAGCTATTCGCTCCCAAGTGCTCTCGCATCCCGAGAGCCTGATGCAGGCGACTAATCCGGAGGAGGTACGAGAGGCCAAACGTCGTGGCTTGTGTGCCATTATCCCCGGTATAGAAAACGGTTATGCCATAGGTAAAGAGTTGGCTAATATCGAGCGGTTCCGTGACATGGGTGTCTGCTATATCACGCTCTGCCATAATGGCGACAATGATATATGCGACTCTGCGCGTAAGACCAAGCATGAGCATAACGGCCTGAGTGACTTTGGTCGGGAGGTCGTTCGGGAAATGAATCGCTTGGGGGTTATGGTGGATATATCGCATGCGGCTGTTTCCACTGTTCGTGATGTCTTGCAAATCAGTAGTGCCCCTGTTGTAGCCAGTCATTCATCGTCCCGCGCTCTGTGTAATCATACACGAAATCTGACCGACGAAGACGCCCTTGCCATAGCCCGTAGTGGGGGAGTGGTGCAGGTTTGTCTCTATGCCGGATTTATTTCCGAGCAGGAGGAAGAGGGCTCCGTACAGCATGCGGCAGACCATATCGACCACTTTGTCAGGTTGTTGGGCATCGAACATGTAGGTGTCGGTTCCGATTTTGATGGAGATGGCGAACTGGTAGGTTGCCGAGGAGCCAATGACCTGATCAATTTGACTGTGGAGCTTCTACGTCGTGGCTATACTCGGGATCAGCTCGGATTGCTCTGGGGCGAGAATTTCCTTCGGGTGATGCAGAATGTACAGCAGAAAGCAAAGTGTCAG","5.40","-19.21","65850","MLSPKNYQYYPAALRQLYEELDGAPQAFEGGESPSRPVIGLTANYNTSGSCIARAYTESVIRAGGLPLLIPLTTDIEVIRHYATFIDGLILSGGDDLLPSYLGEDPIPTLGEVNPERDRGELLLVAEATRRNVPILGICRGHQLLATAFGGGMYQDIYAQSENPVGHNPKIPISFAAHQVRLQGDSVLARILGLSDGELLGVNSLHHQAVSRVPKPFRVTALSSDGVIEAMEAYPEKPILSVQWHPEQMAYAGDTRQQQLFEHLVAEASLFAQAKAVHRSVIVLDSHVDTPMHFCPEFDFTKRGNTLVDAPKMREGLVDACVMVAYLPQGERDDASLKQATDYATGKLEAIRSQVLSHPESLMQATNPEEVREAKRRGLCAIIPGIENGYAIGKELANIERFRDMGVCYITLCHNGDNDICDSARKTKHEHNGLSDFGREVVREMNRLGVMVDISHAAVSTVRDVLQISSAPVVASHSSSRALCNHTRNLTDEDALAIARSGGVVQVCLYAGFISEQEEEGSVQHAADHIDHFVRLLGIEHVGVGSDFDGDGELVGCRGANDLINLTVELLRRGYTRDQLGLLWGENFLRVMQNVQQKAKCQ","1788046 1786241","TIGR ID: PG1701","membrane dipeptidase","Cytoplasm, Extracellular","Residues 264-597 have 31% smilarity to BC003492, M. musculus membrane dipeptidase (EC 3.4.13.19) precursor .Residues 269-597 have 29% similarity to S18442, O. cuniculus membrane dipeptidase (EC 3.4.13.19) precursor.Residues 264-596 have 31% similarity to S27204, R. norvegicus membrane dipeptidase (EC 3.4.13.19) precursor.","
InterPro
IPR006035
Family
Ureohydrolase
PS00148\"[281-289]?ARGINASE_2
InterPro
IPR008257
Family
Peptidase M19, renal dipeptidase
PTHR10443\"[230-597]TPeptidase_M19
PF01244\"[282-594]TPeptidase_M19
InterPro
IPR011697
Domain
Peptidase C26
PF07722\"[37-247]TPeptidase_C26
InterPro
IPR011702
Domain
Glutamine amidotransferase superfamily
PR00096\"[134-145]T\"[241-254]TGATASE
noIPR
unintegrated
unintegrated
G3DSA:3.20.20.140\"[268-600]TG3DSA:3.20.20.140
G3DSA:3.40.50.880\"[34-262]TG3DSA:3.40.50.880
SSF51556\"[268-600]TSSF51556
SSF52317\"[34-268]TSSF52317


","BeTs to 3 clades of COG2071COG name: Predicted glutamine amidotransferasesFunctional Class: RThe phylogenetic pattern of COG2071 is --------e-r---------XNumber of proteins in this genome belonging to this COG is 1","***** IPB000180 (Renal dipeptidase) with a combined E-value of 1.5e-34. IPB000180C 303-338 IPB000180G 438-466 IPB000180H 468-489 IPB000180J 519-558 IPB000180K 558-599 IPB000180E 371-404***** IPB000991 (Glutamine amidotransferase class-I) with a combined E-value of 4e-08. IPB000991A 134-143 IPB000991B 238-249","Residues 489-589 are 36% similar to a (DIPEPTIDASE MICROSOMAL PRECURSOR MDP) protein domain (PD006091) which is seen in O59832_SCHPO.Residues 386-488 are 36% similar to a (DIPEPTIDASE MICROSOMAL PRECURSOR MDP) protein domain (PD005626) which is seen in O14124_SCHPO.Residues 124-248 are 37% similar to a (PROTEIN SAPA-ALDH INTERGENIC REGION) protein domain (PD097060) which is seen in O33341_MYCTU.Residues 124-247 are 36% similar to a (SYNTHASE GLUTAMINE BIOSYNTHESIS AMIDOTRANSFERASE) protein domain (PD000306) which is seen in O88072_STRCO.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Mar 1 10:14:58 MST 2001","Thu Mar 1 10:14:58 MST 2001","Thu Mar 1 10:14:58 MST 2001","Thu Mar 1 10:14:58 MST 2001","Thu Mar 1 10:14:58 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 10:14:58 MST 2001","-48% similar to PDB:1ITQ HUMAN RENAL DIPEPTIDASE (E_value = 8.3E_36);-48% similar to PDB:1ITU HUMAN RENAL DIPEPTIDASE COMPLEXED WITH CILASTATIN (E_value = 8.3E_36);-49% similar to PDB:2I5G Crystal strcuture of amidohydrolase from Pseudomonas aeruginosa (E_value = 7.8E_26);","","","Residues 56 to 264 (E-value = 2.7e-07) place PG1482 in the GATase family which is described as Glutamine amidotransferase class-I (PF00117)Residues 255 to 602 (E-value = 9.5e-25) place PG1482 in the Renal_dipeptase family which is described as Renal dipeptidase (PF01244)","Tue May 15 15:15:07 MDT 2001","34541334","","","","","","1","","15","PG1701" "PG1483","1790003","1788042","1962","ATGAACGAAGACATTAAAAAGAATACCTCGGCATCGGAATATTCGGCCAGCAATATCCAAGTATTGGAAGGTCTGGAAGCTGTCCGCAAGCGACCGGCCATGTATATAGGTGACATCAGCGAAAAGGGATTGCACCATTTGGTCTATGAGGTTGTAGACAACTCGATAGACGAAGCTTTGGCCGGATACTGTGACAATGTAGAGGTAATCATAGAAGAAGATAACTCCATTACGGTTCGTGACAATGGTCGCGGTATTCCGGTGGACTATCACGAGAAAGAAGGTAAGAGTGCTCTCGAAGTGGTTTTGACCGTATTGCATGCCGGAGGTAAGTTTGACAAGGGTTCATACAAAGTCTCGGGCGGTTTGCATGGAGTGGGCGTTTCTTGTGTGAATGCACTTTCCACATATTTGCGTGCAGAGGTGTATCGTAATGGGAAGATCCATATGCAGGAGTTCAGCTGTGGCAAACCCTTGCATGATGTGGAGGTGATAGGCTCCACGGAGCGTACGGGGACGACTATTCAGTTCAAACCGGATAGCTCTATCTTCTCTGTTACGGAATACCAATACTCCATACTGGCCAAGCGTCTCCGCGAACTTTCTTATCTGAATGCGGGGATTACACTTACGCTGACGGATAAACGAACGCTCAAGGAAGACGGCAGTGGCTACAAGCAAGATGTATTCCGTTCGGAAGAAGGATTGAAGGAGTTTGTCCGTCATCTTGACCGTATGAAAGAACCGCTGGTGGACAACGTTATCCATATCGTCACCGAGAAGCAGGGCATTCCCGTGGAGGTAGCCATGACGTATAATACTTCCTATCTGGAGAATGTATATAGCTACGTCAATGACATCAATACGATCGAGGGCGGTACGCATTTGGCCGGATTCCGTCGTGGACTTACTCGAACTTTGAAGAAATATGCCACAGACTCCAAACTCCTGGATAAGGTGAAGGTGGAGATCACCGGCGACGACTTCCGCGAGGGATTGACTGCCGTGATCAGCATCAAAGTGGCCGAACCTCAGTTCGAAGGACAGACCAAGACCAAGCTCGGTAACAATGAAGTGACCGGTGCTGTCGATATGGCTGTAAGCGAAGCACTCGAATACTATCTGGAGGAGCATCCGAAAGAAGCCAAACTGATCGTGGACAAAGTCGTTTTGGCGGCAACTGCTCGTCAGGCAGCCCGTAAGGCCCGCGAAATGGTGCAGCGCAAATCGCCCTTGTCCGGTGGAGGATTGCCGGGTAAGCTTGCCGACTGCTCGTCCAAAGACCCGGAGCAGTGCGAACTCTTCCTTGTCGAGGGTGATTCGGCCGGCGGAACGGCCAAGCAGGGGCGCGACCGCGAGTTTCAGGCTATCCTGCCACTGAGGGGAAAGATCCTCAATGTGGAGAAAGCCATGCAACACAAGGTATTCGAAAGCGAAGAAATCCGCAACATATATACCGCTTTGGGTGTGACGATCGGAACGGAAGAGGACAGCAAAGCCCTTAACCTTTCCAAACTTCGCTATCATAAAGTGGTGATCATGACCGATGCCGATGTGGACGGTAGCCATATCGCTACGCTTATCCTTACGTTCTTCTTCAGGAATATGCGTACGCTCATAGAAAACGGTTATGTCTTCATCGCTACTCCTCCTCTCTACCTTTGCAAGAAGGGGAAAGAGCAAGAGTATTGCTGGACAGAGCAGCAGCGTCAAGCGTTTGTCGACCGTTATGCCGATGGTAATGAAAGCCGTGTGCATGTACAGCGTTACAAGGGCCTTGGTGAGATGAACGAGGAGCAGCTTTGGGAGACGACGATGGATCCGGAGAAGAGGACGCTTCGTAAGGTGACGATCGAGAATGCTGCTGAGGCAGATGCCATATTCTCCATGCTCATGGGAGACGAGGTAGGTCCGCGCAGGGAGTTTATAGAAGAAAATGCTACTTATGCAAGAATAGATGCT","5.50","-14.62","73163","MNEDIKKNTSASEYSASNIQVLEGLEAVRKRPAMYIGDISEKGLHHLVYEVVDNSIDEALAGYCDNVEVIIEEDNSITVRDNGRGIPVDYHEKEGKSALEVVLTVLHAGGKFDKGSYKVSGGLHGVGVSCVNALSTYLRAEVYRNGKIHMQEFSCGKPLHDVEVIGSTERTGTTIQFKPDSSIFSVTEYQYSILAKRLRELSYLNAGITLTLTDKRTLKEDGSGYKQDVFRSEEGLKEFVRHLDRMKEPLVDNVIHIVTEKQGIPVEVAMTYNTSYLENVYSYVNDINTIEGGTHLAGFRRGLTRTLKKYATDSKLLDKVKVEITGDDFREGLTAVISIKVAEPQFEGQTKTKLGNNEVTGAVDMAVSEALEYYLEEHPKEAKLIVDKVVLAATARQAARKAREMVQRKSPLSGGGLPGKLADCSSKDPEQCELFLVEGDSAGGTAKQGRDREFQAILPLRGKILNVEKAMQHKVFESEEIRNIYTALGVTIGTEEDSKALNLSKLRYHKVVIMTDADVDGSHIATLILTFFFRNMRTLIENGYVFIATPPLYLCKKGKEQEYCWTEQQRQAFVDRYADGNESRVHVQRYKGLGEMNEEQLWETTMDPEKRTLRKVTIENAAEADAIFSMLMGDEVGPRREFIEENATYARIDA","1790003 1788042","PG1217 and PG1419 are both subunit A of DNA gyrase, while PG0339 is another copy of subunit B.TIGR ID: PG1702","DNA gyrase subunit B (topoisomerase)","Cytoplasm","This sequence is similar to CT190 and to BT3429.Residues 113-590 are identical to a previously sequenced P.gingivalis protein in GenBank, BAB33157.Numerous significant hits to DNA gyrase B subunit proteins in gapped BLAST; e.g. residues 9-654 are 75% similar to dbj|BAA84773.1| DNA gyrase B subunit of Bacteroides fragilis, residues 37-590 are 76% similar to dbj|BAA90679.1| DNA gyrase subunit B of Porphyromonas asaccharolytica, residues 113-590 are 73% similar to dbj|BAA90680.1| DNA gyrase subunit B of Cytophaga fermentans.","
InterPro
IPR000565
Family
DNA topoisomerase, type IIA, subunit B
PR01159\"[14-24]T\"[188-203]T\"[203-216]T\"[234-256]T\"[326-342]T\"[374-388]T\"[388-408]T\"[484-493]T\"[608-620]T\"[624-640]TDNAGYRASEB
InterPro
IPR001241
Domain
DNA topoisomerase, type IIA, subunit B or N-terminal
PR00418\"[43-58]T\"[78-91]T\"[121-135]T\"[282-295]T\"[434-448]T\"[505-521]T\"[523-540]T\"[543-555]T\"[587-603]TTPI2FAMILY
SM00433\"[43-648]TTOP2c
PS00177\"[436-444]TTOPOISOMERASE_II
InterPro
IPR002288
Domain
DNA topoisomerase, type IIA, subunit B, C-terminal
PF00986\"[578-644]TDNA_gyraseB_C
InterPro
IPR003594
Domain
ATP-binding region, ATPase-like
G3DSA:3.30.565.10\"[11-227]TATP_bd_ATPase
PF02518\"[39-182]THATPase_c
SM00387\"[39-183]THATPase_c
SSF55874\"[13-226]TATP_bd_ATPase
InterPro
IPR006171
Domain
TOPRIM
PF01751\"[462-548]TToprim
InterPro
IPR011557
Family
DNA gyrase, subunit B
TIGR01059\"[14-654]TgyrB
InterPro
IPR011558
Domain
DNA topoisomerase, type IIA, subunit B, conserved region
PD149633\"[439-563]TDNA_gyrase_B
InterPro
IPR013506
Domain
DNA topoisomerase, type IIA, subunit B, region 2
PF00204\"[235-405]TDNA_gyraseB
InterPro
IPR013759
Domain
DNA topoisomerase, type IIA, subunit B or N-terminal, alpha-beta
G3DSA:3.40.50.670\"[398-627]TTopo_IIA_B/N_ab
InterPro
IPR013760
Domain
DNA topoisomerase, type IIA, central
SSF56719\"[408-653]TTopo_IIA_cen
noIPR
unintegrated
unintegrated
PTHR10169\"[33-651]TPTHR10169
PTHR10169:SF3\"[33-651]TPTHR10169:SF3
SSF54211\"[235-406]TSSF54211


","BeTs to 14 clades of COG0187COG name: DNA gyrase (topoisomerase II) B subunitFunctional Class: LThe phylogenetic pattern of COG0187 is a---yqvCEBrHujGPOlINXNumber of proteins in this genome belonging to this COG is 2","***** IPB001241 (DNA topoisomerase II family) with a combined E-value of 2.5e-159. IPB001241A 25-39 IPB001241B 43-62 IPB001241C 77-91 IPB001241D 107-135 IPB001241E 172-184 IPB001241F 282-295 IPB001241G 343-354 IPB001241H 442-489 IPB001241I 506-541 IPB001241J 588-613","Residues 376-484 are 52% similar to a (TOPOISOMERASE ISOMERASE ATP-BINDING DNA SUBUNIT B GYRASE) protein domain (PD000714) which is seen in O84193_CHLTR.Residues 502-569 are 66% similar to a (TOPOISOMERASE ISOMERASE ATP-BINDING DNA SUBUNIT B GYRASE) protein domain (PD000616) which is seen in GYRB_BACSU.Residues 583-644 are 72% similar to a (TOPOISOMERASE SUBUNIT ISOMERASE) protein domain (PD149633) which is seen in GYRB_AQUAE.Residues 139-375 are 43% similar to a (TOPOISOMERASE SUBUNIT ISOMERASE ATP-BINDING B DNA GYRASE) protein domain (PD001260) which is seen in GYRB_MYXXA.Residues 14-135 are 78% similar to a (TOPOISOMERASE ISOMERASE ATP-BINDING DNA SUBUNIT B GYRASE) protein domain (PD000740) which is seen in Q9ZFK1_BORHE.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Tue Mar 26 15:32:43 2002","Wed Mar 22 17:04:03 MST 2000","Mon Dec 22 11:01:45 2003","Tue Mar 26 15:32:43 2002","Wed Mar 14 16:11:41 MST 2001","Wed Mar 14 16:11:41 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 12-646 of PG1483 show 31% similarity to PG0339, a DNA gyrase subunit B (topoisomerase).","Wed Mar 14 16:11:41 MST 2001","Wed Mar 14 16:11:41 MST 2001","-71% similar to PDB:1EI1 DIMERIZATION OF E. COLI DNA GYRASE B PROVIDES A STRUCTURAL MECHANISM FOR ACTIVATING THE ATPASE CATALYTIC CENTER (E_value = 1.8E_108);-60% similar to PDB:1KIJ Crystal structure of the 43K ATPase domain of Thermus thermophilus gyrase B in complex with novobiocin (E_value = 8.9E_84);-74% similar to PDB:1AJ6 NOVOBIOCIN-RESISTANT MUTANT (R136H) OF THE N-TERMINAL 24 KDA FRAGMENT OF DNA GYRASE B COMPLEXED WITH NOVOBIOCIN AT 2.3 ANGSTROMS RESOLUTION (E_value = 1.7E_66);-74% similar to PDB:1KZN Crystal Structure of E. coli 24kDa Domain in Complex with Clorobiocin (E_value = 1.0E_63);-56% similar to PDB:1S16 Crystal Structure of E. coli Topoisomerase IV ParE 43kDa subunit complexed with ADPNP (E_value = 2.2E_58);","","","Residues 39 to 182 (E-value = 6.9e-30) place PG1483 in the HATPase_c family which is described as Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (PF02518)Residues 235 to 405 (E-value = 1.1e-80) place PG1483 in the DNA_gyraseB family which is described as DNA gyrase B (PF00204)Residues 462 to 548 (E-value = 2.7e-07) place PG1483 in the Toprim family which is described as Toprim domain (PF01751)Residues 578 to 644 (E-value = 1.9e-44) place PG1483 in the DNA_gyraseB_C family which is described as DNA gyrase B subunit, carboxyl terminus (PF00986)","Mon Dec 22 11:01:45 2003","34541335","","Suzuki,M., Takadera,T., Harayama,S. and Yamamoto,S. Diversity of marine Cytophaga-like bacteria: Phylogenetic analysis using gyrB sequences and their carotenoids profiles. Unpublished.","Onodera,Y. and Sato,K. 1999. Molecular cloning of the gyrA and gyrB genes of Bacteroides fragilis encoding DNA gyrase. Antimicrob. Agents Chemother. 43 (10): 2423-2429. PubMed: 10508019","Tue Mar 20 16:36:58 MST 2001","Tue Mar 20 16:36:58 MST 2001","1","","15","PG1702" "PG1484","1790846","1790064","783","ATGCATACACGCGCTGAGAAATTGGAGGCTTTCGGCCGTCTGTTGGATGTTCTGGATACCTTGCGAGAGCAGTGTCCATGGGATCGGAAACAGACGAACGAAAGCCTCCGAACAAATACAATAGAAGAGGTCTATGAGCTGAGCGAAGCTCTCTTGGGCGAGTGTCCGGACGACATTCGCAAGGAGCTTGGCGATGTCCTGCTGCACGTAGCTTTCTATGCCAAGATAGGAGAGGAAAAAGGCCAGTTCGATATTGCTTCGGTCTGTCATGCTCTCTGCGACAAGCTGATCTATCGGCATCCGCATATCTATGGCAATGTACAGGTGGAGAATGCTGCCGAAGTGGTACGCAACTGGGAGCAACTCAAACTCCGCGAAAAGGATGGGAACAAGTCCGTCCTCTCCGGCGTGCCGAAGTCTCTCCCTGCTTTGGTGAAGAGCTATCGGATGCAGGAGAAAGCCGCAGGCGTAGGTTTCGACTGGGAGCAACGGGAGCAGGTATGGCCGAAAGTTGAAGAAGAGCTGAACGAAGTCCGAGGGGCTATTGTCAGTGAAGATCCCGATGCCATGGAAGCAGAGTTCGGCGACTTGCTCTTCGCCGTGGTGAATGCCGCTCGTCTCTACGGTATCAATCCGGATAATGCTCTCGAACGTACCAATAGAAAATTCGACAGCCGTTTCTCCTATGTGGAGCAGCGTGCCAAACAGCAGGGCAAAGCTCTCAGAGATATGACCCTCTCGGAGATGGATGCGCTGTGGAATGAGGCAAAACAGAAAGGACTC","5.00","-9.95","29853","MHTRAEKLEAFGRLLDVLDTLREQCPWDRKQTNESLRTNTIEEVYELSEALLGECPDDIRKELGDVLLHVAFYAKIGEEKGQFDIASVCHALCDKLIYRHPHIYGNVQVENAAEVVRNWEQLKLREKDGNKSVLSGVPKSLPALVKSYRMQEKAAGVGFDWEQREQVWPKVEEELNEVRGAIVSEDPDAMEAEFGDLLFAVVNAARLYGINPDNALERTNRKFDSRFSYVEQRAKQQGKALRDMTLSEMDALWNEAKQKGL","1790846 1790064","TIGR ID: PG1703","nucleoside triphosphate pyrophosphohydrolase","Cytoplasm","Residues 25-258 have 50% similarity to Z99104, B. subtilis conserved hypothetical proteins.Residues 10-258 have 42% similarity to AE000684, A. aeolicus hypothetical protein. Residues 11-258 have 42% similarity to AP001507, B. halodurans BH0072~unknown conserved protein. This sequence is similar to BT4350.","
InterPro
IPR004518
Domain
NTP pyrophosphohydrolase MazG, putative catalytic core
PF03819\"[31-104]T\"[173-227]TMazG
InterPro
IPR011551
Domain
NTP pyrophosphohydrolase MazG, bacterial
TIGR00444\"[17-257]TmazG
InterPro
IPR012199
Family
NTP pyrophosphohydrolase MazG
PIRSF002844\"[13-261]TNTP_pyrphdr_MazG
InterPro
IPR012231
Family
NTP pyrophosphohydrolase MazG duplicated
PIRSF500056\"[1-261]TMazG_dupl


","BeTs to 9 clades of COG1694COG name: Uncharacterized ACR, MazG familyFunctional Class: SThe phylogenetic pattern of COG1694 is A--K-qVceBrh-----lin-Number of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","Residues 173-259 are 46% similar to a (PROTEIN MAZG HOMOLOG REGULATORY) protein domain (PD013792) which is seen in MAZG_HAEIN.Residues 220-258 are 58% similar to a (PROTEIN MFD-DIVIC INTERGENIC REGION) protein domain (PD154482) which is seen in YABN_BACSU.Residues 13-127 are 44% similar to a (PROTEIN MAZG HOMOLOG REGULATORY) protein domain (PD009826) which is seen in MAZG_ECOLI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon Jul 28 14:26:05 2008","Mon Jan 5 12:42:12 2004","Thu Mar 1 10:32:43 MST 2001","","Thu Mar 1 10:32:43 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Jul 28 14:26:05 2008","No significant hits to the PDB database (E-value < E-10).","","","Residues 31 to 104 (E-value = 1.6e-31) place PG1484 in the MazG family which is described as MazG nucleotide pyrophosphohydrolase domain (PF03819)Residues 162 to 227 (E-value = 5.8e-07) place PG1484 in the MazG family which is described as MazG nucleotide pyrophosphohydrolase domain (PF03819)","Mon Jan 5 12:42:12 2004","34541336","","","","","","1","","15","PG1703" "PG1485","1792912","1790867","2046","ATGACAAACAAGAACCACAGAAACAGCAAATGGACGGTAGCTTTAGCCCTACTGTTTCTCTCTATGTTGCCCATCGGGGCATCTGCTCAGATTATCAAGGATGTAGTCGTTTGGAAAACCTCTCTTCAGGATAGCGACACGCCTGAGAAAACATTGGTGTTTACGGCCACGATCAAACCCGGATGGCACCTTTATGACCAAAATCTGCCCGAGGATGGCCCTACATCCACAGAATTCCTGTTCGATAAAATGACGGGAGCCAAACTTGTCGGTAAGGCTATTCCTGACAAAGCTCCTGTCAACCGATACGACAAGCAGTTCGAAATGGATCTGAGATGGTACGAGAAGACTGTCTCTTTCCGTCAGAAAATTCAGGTGACGGACCCTGCCAAATTCTCTATCAAAGGTGGTGTTCGCTTCATGGCTTGTAATGATGAAAACTGTCTGCCACCCGAAACGAGCGACTTCTCTTTCGATGCTTCGATGATCAAGAGCAAGGCTGCAGCTCCTGATACCGAAGCTGAAGCTGCTGAAGCGGTTGCTGCCGAGACCGCAGCGGATACTACATCGCAGACCGATGCTGCCGAAGCTCTTTCGTCCAAGGCTGACTTGTGGACACCGGTTGTTAGCGAGTTGCGTGCATACGGTGATGATACGCTCAAGCAGGCAGAGAGTGCTCCGTGGAAGATTTTCCTCTATGGTTTCCTCTACGGTTTTGTTGCATTGCTTACTCCTTGCGTATGGCCTATGATCCCGATGACGGTGAGCTTCTTCCTTAAGCGTAATAAGGACAAGAAGAAAGCCGTGAGAGATGCCTTTACCTACGGAGCTTCCATCATCGTTATCTACGTAGTGCTCGGCTTGCTCATTACGGGTATTTTCGGTGTCAATTCTCTGAACAGTTTGGCCACGAATGCGGTCTTCAACATCATATTCTTCCTGCTGTTGGTAGTCTTCGCTATCTCTTTCTTCGGAGCATTCGAGCTGGTGTTGCCGTCATCTTGGACTAACAAGCTGGACAGCAAGGCGGACTCTACGACCGGTTTGCTCAGTATTTTCTTTATGGCCTTTACGCTGGCTTTGGTGTCCTTCTCTTGTACCGGTCCTATTATCGGTACGCTCTTGGTACAGGCTGCTACAGCCGGCTCCAAACTGGCTCCGGCCATGGGCATGCTTGGCTTTGCCACTTCATTGGCTTTGCCCTTTACTCTTTTTGCGGTCTTCCCCAGCTGGTTGCAGGGTATGCCTAAGAGCGGAGGATGGTTGAATATGGTGAAGGTGGTACTCGGCTTCCTCGAATTGGCTCTTGCTCTCAAGTTCCTCTCCGTGGCAGACTTGGCATATGGCTGGCATATCCTCGATCGTGAGACTTTCCTCGCTCTCTGGATTGTCATTTTCGCTCTGCTCGGTTGCTATCTCTTGGGATGGATCCGTTTCAGCCATGATAGCGAATGGCCACATCTCTCTGTGCCGCGCTTTATGATGGCTACTGTCTCTTTGGCTTTTGCTGTATATATGATCCCCGGTTTGTGGGGGGCTCCGCTCAAGGCTGTAAGTGCTTTTGCTCCGCCGCTCCACACGCAGGATTTCAATCTCTATAGTGGCGAAGTTCATGCTCACTTTACGGATTATGAGGCCGGTATGGCTTTTGCTCGTCAGGAGAACAAACCTGTCCTCCTCGACTTCTCAGGTCACGGCTGCGTGAACTGTAGAAAGATGGAGAATGCCGTTTGGATCGATCCTACAGTAAAGAGCATGCTGGAAAAGGACTATGTACTCATTACCCTGATGGTGGATGAGAAGAAGCCTCTGGCCGAACCTCTGACCATCGTTTTCGATGGTAAAGAGAAGACTCTCCGCACTGTGGGCGACAAGTGGAGTTACCTCCAGAGCCATAAGTTCGGAGCCAATGCACAGCCTTTCTATGTGGCAATTGATCATGAGGGCAAGCCCCTGAGTGCATCCTACTCATATAATGAAGATGTGCCTCTGTACGTGGACTTCCTGAAAGGTGGTTTGCAAGAATTCAAAAAACGCAAAAACAAG","6.90","-0.65","75519","MTNKNHRNSKWTVALALLFLSMLPIGASAQIIKDVVVWKTSLQDSDTPEKTLVFTATIKPGWHLYDQNLPEDGPTSTEFLFDKMTGAKLVGKAIPDKAPVNRYDKQFEMDLRWYEKTVSFRQKIQVTDPAKFSIKGGVRFMACNDENCLPPETSDFSFDASMIKSKAAAPDTEAEAAEAVAAETAADTTSQTDAAEALSSKADLWTPVVSELRAYGDDTLKQAESAPWKIFLYGFLYGFVALLTPCVWPMIPMTVSFFLKRNKDKKKAVRDAFTYGASIIVIYVVLGLLITGIFGVNSLNSLATNAVFNIIFFLLLVVFAISFFGAFELVLPSSWTNKLDSKADSTTGLLSIFFMAFTLALVSFSCTGPIIGTLLVQAATAGSKLAPAMGMLGFATSLALPFTLFAVFPSWLQGMPKSGGWLNMVKVVLGFLELALALKFLSVADLAYGWHILDRETFLALWIVIFALLGCYLLGWIRFSHDSEWPHLSVPRFMMATVSLAFAVYMIPGLWGAPLKAVSAFAPPLHTQDFNLYSGEVHAHFTDYEAGMAFARQENKPVLLDFSGHGCVNCRKMENAVWIDPTVKSMLEKDYVLITLMVDEKKPLAEPLTIVFDGKEKTLRTVGDKWSYLQSHKFGANAQPFYVAIDHEGKPLSASYSYNEDVPLYVDFLKGGLQEFKKRKNK","1792912 1790867","TIGR ID: PG1704","probable thiol-disulfide interchange protein; inner membrane copper tolerance protein","Inner membrane, Cytoplasm","This sequence is similar to BT0186, a predicted dsbD protein.Several hits using gapped BLAST including: residues 138-603 are 24% similar to gb|AAF95841, a thiol:disulfide interchange protein or inner membrane copper tolerance protein in V.cholerae, residues 232-593 are 26% similar to gb|AAC77096 (AE000486) thiol:disulfide interchange protein; copper tolerance in E.coli, and residues 217-571 are 26% similar to gb|AAC68197.1| (AE001330) Thio:disulfide interchange protein in C.trachomatis (CT595).","
InterPro
IPR003834
Domain
Cytochrome c biogenesis protein, transmembrane region
PF02683\"[234-441]TDsbD
InterPro
IPR012335
Domain
Thioredoxin fold
G3DSA:3.40.30.10\"[539-666]TThioredoxin_fold
InterPro
IPR012336
Domain
Thioredoxin-like fold
SSF52833\"[538-682]TIPR012336


","BeTs to 3 clades of COG0526COG name: Thiol-disulfide isomerase and thioredoxinsFunctional Class: O,CThe phylogenetic pattern of COG0526 is AMTkYQVCEBRHUJgpoLINXNumber of proteins in this genome belonging to this COG is 7","No significant hit to the Blocks database.","Residues 235-442 are 25% similar to a (PROTEIN CYTOCHROME BIOGENESIS C-TYPE) protein domain (PD003510) which is seen in DSBD_HAEIN.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Apr 4 17:45:31 MDT 2001","Thu Nov 20 21:06:26 2003","Wed Apr 4 17:43:33 MDT 2001","","Wed Apr 4 17:43:33 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Apr 4 17:43:33 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 234 to 442 (E-value = 3.2e-06) place PG1485 in the DsbD family which is described as Cytochrome C biogenesis protein transmembrane region (PF02683)","Wed Apr 4 17:43:33 MDT 2001","34541337","","","","","","1","","15","PG1704" "PG1486","1793922","1792951","972","ATGCAACCTCCAAAAAGTCGGTCACCCCGCCTGAGACGTCAGCCGGACAAGGTTTTCGAAGTCAGAGAAGAGGATACCCTCTTGCCTTTTCTCGTTCGTATGCTGAAGGATAATAGCCGCACGTCCGTTAAGCAGATATTGACGAGACGGCAAGTTTCCATCAACGGTGTGCCGACTACTCGACACGATGCAGAGCTGAAAGCCGGCGACAGGGTAATCGTGCATCGGACACAGCTACCGGAAGAGCTGCGCCATCCTTTGGTGCGGATCATTTGGCAGGACGACTATTTCGTCCTGATCGAGAAGAAAGCCGGAGTCTCCACTGTAGCCAGTGGCGTCAATAAGGACAGGACTGCTCTGCGCATCGTTAGCGATCATCTCAAGCAATATGATCCGGAGGTGAAAATCTTTATGCTCAACAGACTGGACAAAGATTCTGCCGGAATGGTGCTCTTTGCCAAGAATAAAGAGGTACAGGGGTTTGTGGTGGACAAGTGGTCCAAGGTCGTATTGGAACAGCGTTTCGTGATGGCGATCGAAGGAGAGATGCCCGATGCCGAGGGTACGCTGGATCCTCCTCGGTATCAAACCTCGATCAAGGGCAAGCAGTCTCGTATCGTGGCTGAGACTCCTTCCGTTCATTCGGTGGGAACGGCTCGTTACAAGGTTATTCGTCGCGGAGCGGTATGCTCGCTCGTGGAAGTGACTTTGCTGAGCGGTCGGAACAATCAGCTTCGACGGCAAATGGGGCAGTTGGGTATTCCGATTGCAGGTGATTGGAGGCAGGGTAGTTCTTTCCGCCATCTGGACTGTCTGGCCCTACAGGGAACGCGATTCGTATTCCGTCATCCTGAAACGGGAGATACGCAGGAATATAAGTTGCCTTTGCCCAAACTCTTTCGCCGCCTGATACATCTCGAAGAAGGCACTGCAGCAGACCAAACAATATCAAAGACAAAAAAACGTTCCAAA","10.90","20.84","37023","MQPPKSRSPRLRRQPDKVFEVREEDTLLPFLVRMLKDNSRTSVKQILTRRQVSINGVPTTRHDAELKAGDRVIVHRTQLPEELRHPLVRIIWQDDYFVLIEKKAGVSTVASGVNKDRTALRIVSDHLKQYDPEVKIFMLNRLDKDSAGMVLFAKNKEVQGFVVDKWSKVVLEQRFVMAIEGEMPDAEGTLDPPRYQTSIKGKQSRIVAETPSVHSVGTARYKVIRRGAVCSLVEVTLLSGRNNQLRRQMGQLGIPIAGDWRQGSSFRHLDCLALQGTRFVFRHPETGDTQEYKLPLPKLFRRLIHLEEGTAADQTISKTKKRSK","1794003 1792951 [Bad Olap 1921 59 0]","TIGR ID: PG1705","conserved hypothetical protein","Cytoplasm","Residues 18-304 have 26% similarity to AP001515, B. halodurans unknown conserved protein.Residues 66-304 have 28% similarity to Z99110, B. subtilis conserved hypothetical protein yjbO.Residues 34-304 have 23% similarity to AJ235273, Rickettsia prowazekii sfhB protein homolog.","
InterPro
IPR002942
Domain
RNA-binding S4
PF01479\"[25-72]TS4
SM00363\"[26-88]TS4
PS50889\"[25-86]TS4
InterPro
IPR006145
Domain
Pseudouridine synthase
PD001819\"[139-183]TQ8AA23_BACTN_Q8AA23;
PF00849\"[95-251]TPseudoU_synth_2
noIPR
unintegrated
unintegrated
PTHR10436\"[18-306]TRIBOSOMAL PSEUDOURIDINE SYNTHASE


","BeTs to 13 clades of COG0564COG name: Predicted pseudouridylate synthase family 2Functional Class: JThe phylogenetic pattern of COG0564 is ----YqVCEBRHUJGPOLINXNumber of proteins in this genome belonging to this COG is 3","***** IPB002990 (Pseudouridine synthase, Rlu family) with a combined E-value of 6.4e-13. IPB002990A 90-107 IPB002990B 139-177 IPB002990C 239-263","Residues 90-304 are 26% similar to a (PROTEIN PSEUDOURIDINE SYNTHASE RIBOSOMAL) protein domain (PD001819) which is seen in YJBO_BACSU.","","Thu Jun 14 12:06:30 MDT 2001","","Thu Jun 14 12:06:30 MDT 2001","Thu Jun 14 12:06:30 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:06:30 MDT 2001","Thu Jun 14 12:06:30 MDT 2001","","","Thu Mar 1 10:43:50 MST 2001","Tue Jun 26 10:42:19 MDT 2001","Thu Mar 1 10:43:50 MST 2001","Tue Jun 26 10:42:19 MDT 2001","Tue Jun 26 10:42:19 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 30-297 have 22% similarity to PG0658, ribosomal large subunit pseudouridine synthase D (pseudouridylate synthase).Residues 88-297 have 23% similarity to PG1094.","Tue Jun 26 10:42:19 MDT 2001","Thu Mar 1 10:43:50 MST 2001","-44% similar to PDB:1QYU Structure of the catalytic domain of 23S rRNA pseudouridine synthase RluD (E_value = 1.3E_15);-44% similar to PDB:1V9F Crystal structure of catalytic domain of pseudouridine synthase RluD from Escherichia coli (E_value = 1.3E_15);-44% similar to PDB:2IST crystal structure of RluD from E. coli (E_value = 1.3E_15);-42% similar to PDB:1PRZ Crystal structure of pseudouridine synthase RluD catalytic module (E_value = 5.7E_11);-47% similar to PDB:1XPI Crystal structure of the catalytic domain of E. coli pseudouridine synthase RluC (E_value = 1.6E_10);","","","Residues 95 to 251 (E-value = 9.7e-08) place PG1486 in the PseudoU_synth_2 family which is described as RNA pseudouridylate synthase (PF00849)","Tue Jun 26 10:42:19 MDT 2001","","","","","","","1","","15","PG1705" "PG1487","1794304","1793945","360","ATGAACCCACAGCAGATTCGTGAGATAAGCTACCGTGTCGGCAGTCTCCTTTTGATCTTCGGAGCAGCATCCAGATTGGTACGCTTTGTGCCCGGAGATTACCTCTACGCATTGGGGGCGGTACTCTATCTGCTTTCCTATGCCCTGACTCCTGTTGCGGATTTGGATACTCGTACGCGCAGGCTCTACCGGATGAATGTCCTTTCCGGGGCTTTTTTCGTAGTCTCGGCTATATTGGTCTTTGTACGAGCAGATTCCCTTTGGCTCTTGTTTTTTGCCATTGGTGTGATCTACATGATTTATGCTTCCTTGCTTCTGCTCTTCAGGAAAGGATCGGGAGAGCAAGGAAAAAACAAGAAA","11.00","7.98","13517","MNPQQIREISYRVGSLLLIFGAASRLVRFVPGDYLYALGAVLYLLSYALTPVADLDTRTRRLYRMNVLSGAFFVVSAILVFVRADSLWLLFFAIGVIYMIYASLLLLFRKGSGEQGKNKK","1794304 1793945 [Shorter 1920 59 95]","TIGR ID: PG1706","hypothetical protein","Inner membrane, Cytoplasm","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-32]?signal-peptide
tmhmm\"[9-29]?\"[33-53]?\"[63-83]?\"[89-107]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541338","","","","","","1","","15","PG1706" "PG1489","1794690","1794328","363","GTGTACGGCACAATGGGTATTCGTGACAAAAGAGCAAGTCTTAACAGCAAGAAGCAACGCATCTTAGCCTGGTGGCGTCGCCATTGGTACGTCAAGTATCTGGTGGTAATCGGCTTCTTCTTTCTGGTGACGTTCGTTTTCGGCGATGCCAATATCAGCAAGCAGATTCGCTACAAAAGCCGTATCAACAATTTGAAGAAAGAACTACGGGAGGTAAAGGAACGTTATCATCAGGATAGTGTGCGACTGGAAGAAATCCGGGCGAACAAACAGGGAATAGAGCATACGGCCAGAGAGTTGTATCTGATGAAGCGACCCGAAGAGATCATTTTTCTGATCAAGGATAGCGTCCAAGACAAACAA","10.90","12.71","14702","VYGTMGIRDKRASLNSKKQRILAWWRRHWYVKYLVVIGFFFLVTFVFGDANISKQIRYKSRINNLKKELREVKERYHQDSVRLEEIRANKQGIEHTARELYLMKRPEEIIFLIKDSVQDKQ","1794690 1794328 [Shorter 1922 130 99]","TIGR ID: PG1707","hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR007060
Family
Septum formation initiator
PF04977\"[37-116]TDivIC
noIPR
unintegrated
unintegrated
signalp\"[1-48]?signal-peptide
tmhmm\"[33-53]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","","Thu May 31 18:14:33 MDT 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu May 31 18:14:33 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 27 to 116 (E-value = 8e-05) place PG1489 in the DivIC family which is described as Septum formation initiator (PF04977)","Thu May 31 18:14:33 MDT 2001","34541339","","","","","","1","","15","PG1707" "PG1490","1795057","1795443","387","TTGGGCGGGATGCAACCAGTATCCATTATGGGCAAACATTTAAACAACTTTGAACGCCTTAGCATCCTTGAGGATTACCTCTCGGGGTCAGATAGCAAAGTAGCCATTGAGCAGAAATATGGTCTAAGTCATGGTCTCATTCGCTCTTGGCTTAGTAAATTTGGACTCGAAGATAAAGTTCATCCGGTCCCAATGAAAGTGTCCCAATCCCCCCAGAGTGAGCTACCCCTGAATGAAAAAGAAGAGTTAGAGCAGCTACGTAAAGAAAATCGTGTCCTCAAGAGTCGTCTCAAGCGAGAAGAACTAGGGCATCAAGCCTACAAGCTACTTGTAGAGTTGGCAGAAGAAACCTACGGCATTCAGATACGAAAAAACTCCGAAGCCAAG","9.00","1.96","14755","LGGMQPVSIMGKHLNNFERLSILEDYLSGSDSKVAIEQKYGLSHGLIRSWLSKFGLEDKVHPVPMKVSQSPQSELPLNEKEELEQLRKENRVLKSRLKREELGHQAYKLLVELAEETYGIQIRKNSEAK","1795057 1795443","See PG1491 for associated transposase.Member of the IS3 family of insertion elements.TIGR ID: PG1709","ISPg5-related orf-1","Cytoplasm","PG1490 is equivalent to the previously reported gb|AAF69127.1 in GenBANK. Otherwise, no hits in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Fri Feb 9 17:13:15 MST 2001","Fri Feb 9 17:13:15 MST 2001","Fri Feb 9 17:13:15 MST 2001","Tue Dec 19 15:36:09 MST 2000","","","yes","Fri Feb 20 15:41:32 MST 1998","PG1490 is identical to PG1862, PG1797, PG1437, PG0033, PG0008, and PG0532, and is essentially identical to PG0392, PG1246, and PG0840, all ORFs associated with ISPg5-related transposases. Also paralogous to PG0419, ISPg5-related orf-1.","Mon Jun 4 16:58:21 MDT 2001","Mon Jun 4 16:58:21 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jun 4 16:58:21 MDT 2001","34541340","","Califano,J.V., Kitten,T., Lewis,J.P., Macrina,F.L.,Fleischmann,R.D., Fraser,C.M., Duncan,M.J. and Dewhirst,F.E.Characterization of Porphyromonas gingivalis insertionsequence-like element ISPg5.Infect. Immun. 68 (9), 5247-5253 (2000)20407340","","Fri Feb 9 17:13:15 MST 2001","","1","","15","PG1709" "PG1491","1795500","1796435","936","CTGCTTGGCTTTAGCCGTCAGGCCTTTTATAAACGTCATCTCAACGATTTAGCACAACATGAGGAGGATGTCCTATGCAGTAGTATCATCCAATATTGTTGGCACTTAAGACAAGCAGAGCACCTACCTCAAGCCGGCTTCCGAGAGCTCATGGTGCTTTGTCAGCAATACTTCGGCCCCAAGTTCACGCTTGGGCGCGATCGCTTTTGCGCCCTACTCAGACGCCATGGTATGATGCTGCGCAAACGGTCTGTGCGCCCTCGGACAACCAACTCTCGGCATAGGCTCTACAAGTATGAAGACCTGCTCAATACAGAGCCTAAGTTTGTGCCTCAAAGACCTGGGGAACTCCTTGTAGCAGACATCACCTACGTGGCTTACCAAGATGGGTTTGCCTATCTCTCCCTACTGACCGATGCCTATAGTCGCTGTATCGTAGGGTATTGCTTACATCCGACCCTGGAAGTTGAAGGCTGTTTGAATGCTCTACATCAAGCCTTTGCTTTCTACGATCAGCATCAAATTGATACGAGCAATATGATTCATCATAGCGACCGAGGCATTCAGTATGCCGGTAAGAGCTACACCGATCTGTTGCATGGGCGAGGCTGGCGCATCAGCATGACTCAGACGGGAGATCCTCTGCATAATGCATTGGCTGAGCGGATGAACAATACGCTCAAGAACTCGTGGCACATCTCCTCTTCGAAGCAGTCTTTTGATCAAGCACTCCTTTCTGTAGAACAAGCCGTGCGCATGTACAACGAGGCGCGTCCACATCAAGCTCTAGGGGCGAAAACGCCTATGCAAGTCATTGCGCCAGAGTCTAAAAATCCGTTACTGGCAAGGATCGAACATTGGCCGGAGATTGCCCCCGAGCTATACCGAAGGATGAATGTCAGACAAAGAGCTAACTTTGCTCGTGTCAACCGAAAT","9.90","13.52","36302","LLGFSRQAFYKRHLNDLAQHEEDVLCSSIIQYCWHLRQAEHLPQAGFRELMVLCQQYFGPKFTLGRDRFCALLRRHGMMLRKRSVRPRTTNSRHRLYKYEDLLNTEPKFVPQRPGELLVADITYVAYQDGFAYLSLLTDAYSRCIVGYCLHPTLEVEGCLNALHQAFAFYDQHQIDTSNMIHHSDRGIQYAGKSYTDLLHGRGWRISMTQTGDPLHNALAERMNNTLKNSWHISSSKQSFDQALLSVEQAVRMYNEARPHQALGAKTPMQVIAPESKNPLLARIEHWPEIAPELYRRMNVRQRANFARVNRN","1795650 1796435","One of eleven ISPg5 elements in the genome (see Paralogs). Califano et al. report considerable strain diversity of these (Infect. Immun. 68 (9), 5247-5253 (2000)).Member of the IS3 family of insertion elements. See PG1490 for associated ORF.TIGR ID: PG1710","ISPg5 transposase","Cytoplasm","PG1491 is equivalent to the previously reported gb|AAF69128.1| in GenBANK.Numerous significant hits in gapped BLAST to transposase proteins; e.g. residues 91-213 are 56% similar to transposase homolog (U67062) of Bacteriodes thetaiotaomicrom, residues 64-268 are (33%) similar to InsB (AF153317) of Shigella dysenteriae, residues 64-268 are 33% similar to Hp1 (AF081284) of E.coli.","
InterPro
IPR001584
Domain
Integrase, catalytic core
PF00665\"[110-273]Trve
PS50994\"[110-276]TINTEGRASE
noIPR
unintegrated
unintegrated
G3DSA:3.30.420.10\"[113-281]Tno description


","No hit to the COGs database.","***** PF01836 (Transposase) with a combined E-value of 4.3e-23. PF01836B 103-154 PF01836C 181-190 PF01836D 215-222 PF01836E 253-272","No significant hit to the ProDom database.","","Thu Jun 14 12:07:04 MDT 2001","","Thu Jun 14 12:07:04 MDT 2001","Thu Jun 14 12:07:04 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:07:04 MDT 2001","Thu Jun 14 12:07:04 MDT 2001","","Tue Jun 26 10:44:47 MDT 2001","Fri Feb 9 16:06:53 MST 2001","Tue Jun 26 10:44:47 MDT 2001","Thu Nov 16 11:16:05 MST 2000","Tue Jun 26 10:44:47 MDT 2001","","yes","Fri Feb 20 15:41:32 MST 1998","PG1491 is identical to PG0391, essentially identical to PG0034, and is paralogously related to PG1861, PG0007, PG0418, PG1436, PG1796, PG0533, PG1247 and PG0841, all ISPg5 transposases.","Mon Jun 4 17:05:33 MDT 2001","Mon Jun 4 17:05:33 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 110 to 273 (E-value = 8.3e-31) place PG1491 in the rve family which is described as Integrase core domain (PF00665)","Tue Jun 26 10:44:47 MDT 2001","34541341","","Califano,J.V., Kitten,T., Lewis,J.P., Macrina,F.L., Fleischmann,R.D., Fraser,C.M.,Duncan,M.J. and Dewhirst,F.E. Characterization of Porphyromonas gingivalis insertionsequence-like element ISPg5.Infect. Immun. 68 (9), 5247-5253 (2000)","","Thu Nov 16 11:16:05 MST 2000","","1","","15","PG1710" "PG1492","1799006","1796748","2259","ATGAGCTTGCTTGGCTTTTTCCTCCTTGTGCTAAGCTCTGCCGGATGTAAAGATGATGTCCAGACCGACATATTTAAGGGGCCTGTGGACTACGTGAATCCTTATATGGGCAATATCAGTCATCTGCTCATTCCCACTTTTCCCACTGTGCATTTGCCCAATAGTATGTTGCGCATGTGTCCGGTACGAACCGACTATACTTCTCAGTTGATGGACGGACTGCCCCTGTTGCTGACCTCTCATCGCGGAGCAAATGCTTTTCGTCTCAGTCCGCTGAACCACCTGCCGGATTCCATCCCCGCAGTTGCGCGCTATACCTATGACAATGAAGCGGTGCGTCCTTACCGCTATTCCGTCTTGCTCGATGAGGAGGATGTAGAGGTGGATTTTGCGCCTTCTTTTCGTAGTGCCATTTACCGCTTGGGTTTCAATGCCGATAGCAGCCGGCATTACCTCGTTGTTCACTCTGAGAAAGGGGAATTGACTGCCGAAGGTAATGTCATATCCGGCTATCGCTATCTTCAGGACAGTACGCGAGTATTTGTCTATATGGAGACGGAGCAGCAGCCTGTGACGTACGCTCGCCGTTCGGAAAAAGGCGAGTACATCTGGAATAAGGGCAAGGTAACGGGCAAAACTCTCGTGCTGAACTACGATCTGGCCGGAACGGATCTCTTCCTTCGCTATGGTATTTCCTATATCAGTGTGGCACAAGCCAAAAAGAATCTTCGTCAGGAAATACAGGCTTACAACGTGGAAGTGGTGTCCAAGATGGGACGGAACGAATGGAACAAAACACTGGGCAAAGTGCAGATCGAGGGAGGTACGATTCTTCAGCGACAGGTATTCTACACCAGCCTTTATCGTACATATGAACGGATGATCAATATCTCGGAGGATGGTCATTTCTACAGTGCCGAAGATCATGCTGTGCATCCGGATAGGGGCATTCCTTTCTATACAGACGATTGGGTGTGGGACACCTATCGGGCTGTACATCCCCTGCGTATTCTTTTGGAGCCGGAGATGGAATCCGACATGGTCAATTCCTACATTCGTATGGCTTTGCTTAGCAGGGAGAAATGGTTGCCTACCTTCCCGGAAGTGACAGGCGACAGCCATCGTATGAATGGCAATCATGCTATAGCCATGCTTGCCGATGCCTATGCCAAAGGTCTTACGGGTTTCAATTTGAATGAGGCGTATACGGTAGCCAAAAAAGTGATGGCCGAGAAGACGTACGCACCTTGGCGGCGTATGCCCAAAGGCACACTCGATCAATTTTTCGATGAGAAAGGCTACTACCCCGCATTGCCACAGGACCAAAAGGAAACCGACCCTACCATACACTCTTGGGAGAAGCGGCAGGCAGTAGCCGTTACGCTTGCTATTGCTTACGATTATTGGTGCCTTAGCCGATTGGCACAGTTCTCCGGCCACGAGCACGAAGCGCGTGAATTTCTGCGTAGGAGCTACGACTACCGACATCTTTACAATTCGGAGACGGGATTCTTTCATCCCAAGGATGAGAAGGGACGCTTCATACAGCCCTTCGATTACGAATTTGATGGAGGCCCGGGTGCACGAGACTATTATGACGAGAACAATGCTTACACTTATCGCTGGGATGTACAGCACAACCTCCATGATCTGATTGCCTTGATGGATGGGCCGGAACAGTTTGTCAGTTTCTTGGATCAGACTTTCCGCACACCGATGAGTACATGGAAGTTCAATTTTTATTCCAAGCTGCCCGACCAGACAGGCAATGTAGGACAGTTTTCCATGGCCAATGAGCCGAGCCTGCATATACCCTATTTATATGTCTATGCCGGTCAGCCATGGCGAACGCAGAAGTTGATCCATGAGCTTGTAAACGAATGGTTCCGAAACGATCTGATGGGAGTCCCCGGAGACGAAGATGGTGGAGGGCTGAGTGCGTTCGCCGTCTTTTCGATGATGGGATTCTATCCCGTCACACCGGGTTTACCGGTCTATGTGATCGGTAGTCCTTTTTTCAGCAAGATAACGATCGATCTCGGTGGAGGCAACCACCTTACGATCATCGCCAACGGTGCCGGAGCTGAAAACAAATACATCCAAAAGGCCGTGCTCAACGGGAAAACCTTGGATAAAGCATGGTTCCAACATAGCGACATAGCCCAAGGCGGCATTTTGGAGCTGAAGATGGGACCGCGCCCCAACAAACTATGGGGAGTCGATACGCCTCCTCCTTCTGCAGATCCCTATCCGGGCGAC","6.10","-11.54","86070","MSLLGFFLLVLSSAGCKDDVQTDIFKGPVDYVNPYMGNISHLLIPTFPTVHLPNSMLRMCPVRTDYTSQLMDGLPLLLTSHRGANAFRLSPLNHLPDSIPAVARYTYDNEAVRPYRYSVLLDEEDVEVDFAPSFRSAIYRLGFNADSSRHYLVVHSEKGELTAEGNVISGYRYLQDSTRVFVYMETEQQPVTYARRSEKGEYIWNKGKVTGKTLVLNYDLAGTDLFLRYGISYISVAQAKKNLRQEIQAYNVEVVSKMGRNEWNKTLGKVQIEGGTILQRQVFYTSLYRTYERMINISEDGHFYSAEDHAVHPDRGIPFYTDDWVWDTYRAVHPLRILLEPEMESDMVNSYIRMALLSREKWLPTFPEVTGDSHRMNGNHAIAMLADAYAKGLTGFNLNEAYTVAKKVMAEKTYAPWRRMPKGTLDQFFDEKGYYPALPQDQKETDPTIHSWEKRQAVAVTLAIAYDYWCLSRLAQFSGHEHEAREFLRRSYDYRHLYNSETGFFHPKDEKGRFIQPFDYEFDGGPGARDYYDENNAYTYRWDVQHNLHDLIALMDGPEQFVSFLDQTFRTPMSTWKFNFYSKLPDQTGNVGQFSMANEPSLHIPYLYVYAGQPWRTQKLIHELVNEWFRNDLMGVPGDEDGGGLSAFAVFSMMGFYPVTPGLPVYVIGSPFFSKITIDLGGGNHLTIIANGAGAENKYIQKAVLNGKTLDKAWFQHSDIAQGGILELKMGPRPNKLWGVDTPPPSADPYPGD","1799048 1796748","TIGR ID: PG1711","conserved hypothetical protein","Cytoplasm, Outer membrane, Periplasm","Residues 87-745 have 25% similarity to AE005726, conserved hypothetical protein of Caulobacter crescentus.Residues 31-744 have 28% similarity to AE003923, X. fastidiosa conserved hypothetical protein .Residues 30-745 have 26% similarity to AL133278, S. coelicolor putative secreted protein.This sequence is similar to BT3858.","
InterPro
IPR005887
Family
Alpha-1,2-mannosidase, putative
TIGR01180\"[1-738]Taman2_put
InterPro
IPR012939
Domain
Glycosyl hydrolase 92
PF07971\"[207-734]TGlyco_hydro_92


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 221-746 are 28% similar to a (PROTEIN PUTATIVE SECRETED) protein domain (PD148719) which is seen in O86365_MYCTU.","","Thu Jun 14 12:08:17 MDT 2001","","Thu Jun 14 12:08:17 MDT 2001","Thu Jun 14 12:08:17 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:08:17 MDT 2001","Thu Jun 14 12:08:17 MDT 2001","","","Fri Apr 6 15:08:51 MDT 2001","Sat Jan 3 09:51:37 2004","Thu Mar 1 10:54:32 MST 2001","","Tue Jun 26 10:50:07 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 29-735 have 29% similarity to PG1493, animmunoreactive 89kD antigen PG87. Residues 19-734 have 27% similarity to PG0871 immunoreactive 87kD antigen PG92. Residues 8-738 have 26% similarity to PG0805, a conserved hypothetical protein (immunoreactive 89kD antigen PG87).","Tue Jun 26 10:50:07 MDT 2001","Thu Mar 1 10:54:32 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Jun 26 10:50:07 MDT 2001","34541342","","","","","","1","","","PG1711" "PG1493","1801418","1799076","2343","ATGGATCGTCCTAAGCCTTCATATATTGTTCGAATAGCAGCCATTCTCTGCTTGTTTGTCGGCAGGCCTTTGTTTGCGCAGAGCTATGTGGACTACGTCGATCCGCTGATCGGGACGCTAAGTTCTTTTGAGCTGAGTGCGGGCAATACCTATCCGGTGATCGGTTTACCGTGGGGAATGAATAGCTGGACACCGATGACCGGTGTACCCGGTGACGGCTGGCAATATACCTACTCGGCACACAAGATTCGCGGATTCAAACAGACCCACCAACCCAGTCCTTGGATCAACGACTACGGCCAATTCTCCCTTCTTCCCCTTACGGCACCGCAGAAGCCATCATCGAACGACTCCATAGCTCTGACTAAATGGTGCAAGCAACTCTTTTCGGACGAACAGACCTCGTGGTTCTCGCACAAAGCGGAGACGGCGACGCCATACTATTATAGTGTCTATTTGGCCGATTACGACACACGCGTGGAGATGGCTCCGACCGAGCGTGCAGCTATCTTTCGCATACGTTATTCCGGCAATACCGAAAGTGGCTCCGGTCGATGGCTTCGTCTTGATGCCTTTACCGGTGGTTCGGAGATTAGCATCGTGGATCCTCACACCGTAGTGGGCATATCTCGCAAGAATAGCGGAGGTGTGCCGGCTAACTTCGCCTGTTATTTCATCCTGCAGTCCGATACTCCTATGGCCGATGTCCTGCTTGAGACAGATACCGGCAAGTCAGACGAAGGCACAAGGGCATGGGCAGCCTGTCGCTTCGATTCGCAAGAAGTTACCGTCCGGGTGGCATCTTCTTTTATCAGTGTCGAGCAGGCCGAAAGAAATCTTGCGGAAGTCAAAGGGCAGAGTTTCGACCGGATCAGACTTGCCGGTCGCGAAGCTTGGAATAAGGTGCTCGGACGCATACATGTGGAAGGAGGAACGAAGGATGAGCGCACTACATTCTATTCCGCACTCTATCGCTGTCTGCTTTTTCCCCGTCGCTTCTATGAGGAGGATGCTTCCGGCAATTTTGTGCATTACAGCCCCTACAATGGAGAGGTACTTCCCGGTTATCTCTATACCGATACCGGATTTTGGGACACTTTTCGAGCCCTTTTCCCCCTGCTCAATCTGCTGTATCCCGATGAAAACATTAAAATTCAGGAAGGTCTGCTGAATGTATATCGCGAGAGTGGCTTTTTCCCCGAATGGGCCAGTCCGGGCCATCGGGATTGTATGATAGGCAACAACTCTGCTTCTGTTCTGGCGGATGCCTACCTCAAGGGTGTTCGGGTAGAAGATACCCGTACACTGATGAACGGACTCTTGCATGCTACGAAAGCCGTCCATCCGAAAATCTCCTCCACGGGTCGCAAAGGTTGGGAGTGGTACAACTCCTTAGGTTATGTTCCGGCTGATGCAGGCATCGACGAAAGTGCTGCCCGTACGCTCGAATATGCTTATAACGATTGGTGCATCCTCCGACTGGGGCGCACATTGGGTTGGGATAGAGCTGCATTGGACACGTTGGCTCATCGTTCGATGAACTATCGTCATCTGTTCGATCCGGAAACCAAACTCATGCGCGGTAGAAATCAGGATGGTAGTTTCCGGACACCTTTTTCCCCTTTCAAATGGGGAGATGTATTCACGGAGGGCAATGCCTGGCACTACACTTGGTCGGTCTTTCATGATGTGCAGGGGCTTATCGACCTGATGGGAGGAGATCGCCCGTTCGTGTCTATGCTCGATTCGGTATTCAATACTCCTCCTATGTTCGATGAGAGCTATTACGGATTTGTCATCCACGAAATCAGAGAGATGCAAATAGCGGATATGGGCAATTATGCTCATGGCAATCAACCCATACAGCATATGATATATCTGTATAATCATGCCGGTCATCCATGGAAAGCTCAGGAGAGACTACGCGAAGTGATGGGGCGGCTCTATCGTCCTACTCCGGATGGGTATTGCGGCGATGAAGACAACGGACAGACTTCGGCTTGGTACGTTTTCTCTGCTTTAGGCTTCTATCCTGTTACACCCGCTACGGATCAGTATGTGCTCGGTTCGCCGATTTTTTCCAAGGTAATACTCTCTTTTCCCGACGGACACAAAACGGTGTTGCATGCTCCGGCCAACAGTGCCGATACGCCTTACATCCGCTCGATCAGCGTAGAAGGAAAAGAATGGAGCTGCAATTACCTGACTCACGAACAGCTTCGCTCTTCTGCATCCATTCAATGGATGATGGACACGAAACCCAATTATAATCGTGGTATGAAGGAAAGTGACAGACCTTATTCCTTCTCCACGGAGCAACAGCGTCGCGCTAATCACAGTAAT","6.40","-7.07","88650","MDRPKPSYIVRIAAILCLFVGRPLFAQSYVDYVDPLIGTLSSFELSAGNTYPVIGLPWGMNSWTPMTGVPGDGWQYTYSAHKIRGFKQTHQPSPWINDYGQFSLLPLTAPQKPSSNDSIALTKWCKQLFSDEQTSWFSHKAETATPYYYSVYLADYDTRVEMAPTERAAIFRIRYSGNTESGSGRWLRLDAFTGGSEISIVDPHTVVGISRKNSGGVPANFACYFILQSDTPMADVLLETDTGKSDEGTRAWAACRFDSQEVTVRVASSFISVEQAERNLAEVKGQSFDRIRLAGREAWNKVLGRIHVEGGTKDERTTFYSALYRCLLFPRRFYEEDASGNFVHYSPYNGEVLPGYLYTDTGFWDTFRALFPLLNLLYPDENIKIQEGLLNVYRESGFFPEWASPGHRDCMIGNNSASVLADAYLKGVRVEDTRTLMNGLLHATKAVHPKISSTGRKGWEWYNSLGYVPADAGIDESAARTLEYAYNDWCILRLGRTLGWDRAALDTLAHRSMNYRHLFDPETKLMRGRNQDGSFRTPFSPFKWGDVFTEGNAWHYTWSVFHDVQGLIDLMGGDRPFVSMLDSVFNTPPMFDESYYGFVIHEIREMQIADMGNYAHGNQPIQHMIYLYNHAGHPWKAQERLREVMGRLYRPTPDGYCGDEDNGQTSAWYVFSALGFYPVTPATDQYVLGSPIFSKVILSFPDGHKTVLHAPANSADTPYIRSISVEGKEWSCNYLTHEQLRSSASIQWMMDTKPNYNRGMKESDRPYSFSTEQQRRANHSN","1801442 1799076","TIGR ID: PG1712","conserved hypothetical protein (immunoreactive 89kD antigen PG87)","Outer membrane, Cytoplasm","PG1493 was previously sequenced and submitted to GenBANK as AF175722, immunoreactive 89kD antigen PG87 by Ross,B.C., Barr,I., Patterson,M., Agius,C., Rothel,L., Margetts,M., Hocking,D. and Webb,E.Several significant hits in gapped BLAST. Residues 30-770 are 33% similar to (AE006380) sugar hydrolase of Lactococcus lactis subsp. lactis. Residues 30-755 are 31% similar to (AB025248) alpha-1,2-mannosidase of Bacillus sp. M-90. Residues 23-773 are 31% similar to (AE003923) conserved hypothetical protein of Xylella fastidiosa.This sequence is similar to BT3527.","
InterPro
IPR005887
Family
Alpha-1,2-mannosidase, putative
TIGR01180\"[1-758]Taman2_put
InterPro
IPR008928
Domain
Six-hairpin glycosidase-like
SSF48208\"[273-402]TGlyco_trans_6hp
InterPro
IPR012939
Domain
Glycosyl hydrolase 92
PF07971\"[246-754]TGlyco_hydro_92


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 142-769 are 28% similar to a (PROTEIN PUTATIVE SECRETED) protein domain (PD148719) which is seen in O86365_MYCTU.","","Thu Jun 14 12:08:30 MDT 2001","","Thu Jun 14 12:08:30 MDT 2001","Thu Jun 14 12:08:30 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:08:30 MDT 2001","Thu Jun 14 12:08:30 MDT 2001","","","Fri Apr 6 15:39:48 MDT 2001","Mon Dec 22 11:21:22 2003","Thu Mar 1 11:03:47 MST 2001","","Tue Jun 26 10:55:09 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 29-756 have 32% similarity to PG0805, conserved hypothetical protein (possible immunoreactive antigen).Residues 30-755 have 29% similarity to PG1492.Residues 31-754 have 28% simliarity to PG0871, immunoreactive 87kD antigen PG92.","Tue Jun 26 10:55:09 MDT 2001","Thu Mar 1 11:03:47 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Jun 26 10:55:09 MDT 2001","34541343","","Ross,B.C., Barr,I., Patterson,M., Agius,C., Rothel,L., Margetts,M., Hocking,D. and Webb,E.,Porphyromonas gingivalis polypeptides and nucleic acids,Patent: Australia (AU 98/01023)-PCT 10-DEC-1998.","","Thu Mar 1 11:03:47 MST 2001","","1","","","PG1712" "PG1494","1801904","1801503","402","ATGAAACAAAAACTAATCCTTGCGATACTGCTTATGTCTTTCGTTTCTTTGTTTAGTTGTGCCTGCAAGAATGCTGCACAGACAGATACCCCGGCGGACAAGTCGATCGTAAACAATGTAAACGCCGATCGCTTCCGCGAATTATTGGCTGATCCTACTATACAATTGATCGACGTTCGCACTGCGGAAGAGTATGCTCAAGGTCATATTGCCAATGCCAAGCTGTTGCCCGTCACGGACAGTAACTTCAAGGAGCAGGCCGATCAGGAGTTGGACAAGGCGCATCCCGTAGCCATTTACTGCCGGAGCGGAGGACGAAGTGCCAAAGCCGCCGATATTCTTTTGCGTAGAGGCTATTTTGTTTACAACCTTCTGGGCGGATATAAAGGCTATCCGTACAAG","8.80","3.32","14855","MKQKLILAILLMSFVSLFSCACKNAAQTDTPADKSIVNNVNADRFRELLADPTIQLIDVRTAEEYAQGHIANAKLLPVTDSNFKEQADQELDKAHPVAIYCRSGGRSAKAADILLRRGYFVYNLLGGYKGYPYK","1801904 1801503","TIGR ID: PG1713","conserved hypothetical protein (possible phage shock protein)","Periplasm","Residues 37-134 have 41% similarity to D86934, S. aureus ORF N052.Residues 55-131 have 48% similarity to AB033763, S. aureus hypothetical protein.Residues 56-129 have 44% similarity to AE004352, V. cholerae phage shock protein E.","
InterPro
IPR001763
Domain
Rhodanese-like
PF00581\"[41-134]TRhodanese
SM00450\"[40-132]TRHOD
PS50206\"[50-132]TRHODANESE_3
noIPR
unintegrated
unintegrated
G3DSA:3.40.250.10\"[21-131]TG3DSA:3.40.250.10
PTHR13253\"[56-119]TPTHR13253
PTHR13253:SF2\"[56-119]TPTHR13253:SF2
PS51257\"[1-20]TPROKAR_LIPOPROTEIN
SSF52821\"[1-131]TSSF52821


","BeTs to 11 clades of COG0607COG name: Rhodanese-related sulfurtransferasesFunctional Class: PThe phylogenetic pattern of COG0607 is amT-YQ-CEBRHuj--o---xNumber of proteins in this genome belonging to this COG is 3","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Mar 1 11:11:15 MST 2001","Thu Mar 1 11:11:15 MST 2001","Thu Mar 1 11:11:15 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 18-131 have 32% similarity to PG0160, an NADH oxidase/peroxidase.","Tue Jun 5 15:55:52 MDT 2001","Thu Mar 1 11:11:15 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 41 to 134 (E-value = 1.3e-19) place PG1494 in the Rhodanese family which is described as Rhodanese-like domain (PF00581)","Tue Jun 5 15:55:52 MDT 2001","34541344","","","","","","1","","","PG1713" "PG1495","1802585","1801944","642","ATGGATTTACATTTCGAAAATATCAGGCGGGAATATGACAAACGAAGCCTTTCCGCCAGCGACCTGACACCTACTCCTTTCGACCTTGTCACCAGATGGTTGCAAGATGCGGTCGAAGCCAAAACATATGAGCCTACAGCCGTTATCGTCGGGACGGCTACTCCTGACGGTCATCCCAGTACGCGAACCGTTTTGCTCAAGGAGTTTATGAACAACGAATTTATCTTCTACAGCAACTATGAGAGTCGCAAGGGGCAGCAAATGGCTGCCAATCCGCACGTCTGTCTCACATTCCTCTGGCACGAACTGGAGCGTCAGATACATGTGGAGGGGGATGTACGTATTTTAGAGCCGGAGCTTAGCGATGCTTATTTTGCTACACGTCCGTACAAAAGTCGGGTAGGGGCGCGCATTTCGCCACAGAGTCGTCCTATACCGGGGCGTTCTTTCATCGTACAGGAATTCATGAAGGAGTCGCTCAAATATGCCGGTCGGACTGTGCCACGTCCTGACACTTGGGGTGGCTTTGCCGTGAAGCCGGTACGAATAGAATTTTGGCAAGGGCGCGAAAGCCGCTTGCACGATCGCTTCCTGTACGAACTCCGGCCCGATGCTTCCTGGTCTGTTCACCGCTTGGCTCCG","8.40","2.64","24897","MDLHFENIRREYDKRSLSASDLTPTPFDLVTRWLQDAVEAKTYEPTAVIVGTATPDGHPSTRTVLLKEFMNNEFIFYSNYESRKGQQMAANPHVCLTFLWHELERQIHVEGDVRILEPELSDAYFATRPYKSRVGARISPQSRPIPGRSFIVQEFMKESLKYAGRTVPRPDTWGGFAVKPVRIEFWQGRESRLHDRFLYELRPDASWSVHRLAP","1802585 1801944","TIGR ID: PG1714","pyridoxamine-phosphate oxidase","Cytoplasm","Residues 1-214 have 49% similarity to AL162756, N. meningitidis pyridoxamine-5'-phosphate oxidase. Residues 7-214 have 44% similarity to D90913, Synechocystis sp. pyridoxamine 5-phosphate oxidase.Residues 1-214 have 46% similarity to U32768, H. influenzae pyridoxamine phosphate oxidase (pdxH). ","
InterPro
IPR000659
Family
Pyridoxamine 5'-phosphate oxidase
PD006312\"[49-148]TPyridox_oxidase
PIRSF000190\"[1-214]TPyd_amn-ph_oxd
PTHR10851\"[1-214]TPyridox_oxidase
TIGR00558\"[2-214]TpdxH
PS01064\"[183-196]TPYRIDOX_OXIDASE
InterPro
IPR009002
Domain
FMN-binding split barrel, related
SSF50475\"[15-214]TFMN_binding
InterPro
IPR011576
Domain
Pyridoxamine 5'-phosphate oxidase-related, FMN-binding core
PF01243\"[34-120]TPyridox_oxidase
InterPro
IPR012349
Domain
FMN-binding split barrel
G3DSA:2.30.110.10\"[4-214]TPNPOx_FMN_bd


","BeTs to 4 clades of COG0259COG name: Pyridoxamine phosphate oxidaseFunctional Class: HThe phylogenetic pattern of COG0259 is ----y--ce-rh---------Number of proteins in this genome belonging to this COG is 1","***** IPB000659 (Pyridoxamine 5'-phosphate oxidase) with a combined E-value of 3.3e-54. IPB000659A 33-53 IPB000659B 73-104 IPB000659C 109-142 IPB000659D 167-196","Residues 20-214 are 45% similar to a (BIOSYNTHESIS OXIDOREDUCTASE FLAVOPROTEIN) protein domain (PD006312) which is seen in PDXH_SYNY3.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Mar 1 11:25:05 MST 2001","Tue May 15 15:18:58 MDT 2001","Thu Mar 1 11:25:05 MST 2001","Tue May 15 15:18:58 MDT 2001","Thu Mar 1 11:25:05 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.1-214 ","Thu Mar 1 11:25:05 MST 2001","Thu Mar 1 11:25:05 MST 2001","-56% similar to PDB:1G76 X-RAY STRUCTURE OF ESCHERICHIA COLI PYRIDOXINE 5'-PHOSPHATE OXIDASE COMPLEXED WITH PYRIDOXAL 5'-PHOSPHATE AT 2.0 A RESOLUTION (E_value = 1.6E_44);-56% similar to PDB:1G77 X-RAY STRUCTURE OF ESCHERICHIA COLI PYRIDOXINE 5`-PHOSPHATE OXIDASE COMPLEXED WITH PYRIDOXAL 5'-PHOSPHATE AT 2.0 A RESOLUTION (E_value = 1.6E_44);-56% similar to PDB:1G78 X-RAY STRUCTURE OF ESCHERICHIA COLI PYRIDOXINE 5'-PHOSPHATE OXIDASE COMPLEXED WITH PYRIDOXAL 5'-PHOSPHATE AT 2.0 A RESOLUTION (E_value = 1.6E_44);-56% similar to PDB:1G79 X-RAY STRUCTURE OF ESCHERICHIA COLI PYRIDOXINE 5'-PHOSPHATE OXIDASE COMPLEXED WITH PYRIDOXAL 5'-PHOSPHATE AT 2.0 A RESOLUTION (E_value = 1.6E_44);-56% similar to PDB:1JNW Active Site Structure of E. coli pyridoxine 5'-phosphate Oxidase (E_value = 1.6E_44);","","","Residues 34 to 120 (E-value = 2.4e-21) place PG1495 in the Pyridox_oxidase family which is described as Pyridoxamine 5'-phosphate oxidase (PF01243)","Tue May 15 15:18:58 MDT 2001","34541345","","","","","","1","","","PG1714" "PG1496","1806149","1803489","2661","ATGATTCAAGCCAACGTACAGCTTGTACAGAGTACCGGCCAAGTAGCCGTTGCCGCAGGTGCCACTAATGAAAAAGGGTTGTTCAGCCTGAAAACGTCACAGGAGGGTGACTACATTCTGCGCGTTTCATATGTAGGTTACACTACCCACGACGAAAAAATATCTCTTAGAAACGGGCAAACCATTACGCTCAAAGATATATCCATGAACGAAGATGCCCGTCTTCTACAGAGTGTGACGGTGCAGGCTAAAGCGGCAGAGGTCGTGGTACGCAACGATACGCTCGAATTCAATGCCGGATCCTATACCGTAGCACAGGGAGCTTCTATCGAGGAACTGATCAAGAAGCTACCCGGAGCAGAGATCGGATCCGATGGGAAGATCACCATCAACGGCAAGGACATTAGCAAGATCCTTGTCGATGGCAAAGAGTTTTTCTCCAAAGATCCACAGGTGGCAATAAAGAATCTTCCGGCCGATATGGTCAATAAAGTACAGGTACTGAACAAACTGAGCGAGCTGTCGCGGATGAGCGGTTTCGATGATGGAGAAGAGGAGACCGTAATCAACCTGACGGTGAAGCCCGAAAAAAAGAAAGGCCTCTTCGGAACGCTTCAGGCCGGCTACGGTACCGACCAACGCTATATGGCCGGAGGGAACGTCAATCGGTTCGATGGAAATAAGCAATGGACATTGATCGGTAGTGCGAACAATACGAACAATATGGGCTTTAGCGAGATGGACAGCGAGATGGGATCCATGACCTTCTTCTCTCCCCAAGGCGGTGGTCGACGCGGCTTCGGCAATAGTGGAGGTGTTACGTCTTCGTCGATGCTGGGCGGCAACTTCAGTGTCGAATTCTCCTCTGCCCTTAATACAGGAGGCGATGCACGCTACGGATACAACGACAAGGCCATAGAGACGACCAAACGCGTGGAAAATATCCTCGCCGAAGGGAATACTTATATGGACGAAAATATATTGGAACGCTCTTTCTCTCACAATGGTCAGGCGCGATTTAGGATGCAATGGAAACCGTCCGAACGTACCGAAGTGGTATTCGAGCCGGATCTTTCGATATCCAAGATCGATGGGTTCTTTAACGACACATACGAGACGAAAGATGCCACCGGAATCTCTATCAACAAAGGTTCTATCCACCAAACTACACAAGGAAACAACTTCAGACTGAACGGAGAATTGGATATCAGTCACAAGCTCAACGACGAAGGCCGTACGATCAGTGCCTCCGTCAGTGGCGGTCTGACCGACGAAGACGGAGATGGCATATATCAGGCTGTGCTCCAAAGCGTGGAGACGAATCAAAAGCAATTCAACGACAACTCCAACCTGCAATATCGGCTTCGCCTCTCGTATGTGGAACCGTTGGGTAAAAACTACTTCGCACAAGCGATTCTGAACAGACGTTTCTCCCGTCGCAATTCGGATCGTGAGGTGTACCGACTGGGCGATGACGGGCAATACTCCATATTAGACAGTCAGTACGGACTCTCCTACAGTAACGAGTTCACCCAGTATCGCATCGGACTCAACCTCAAGAAGATTGCCAAAACGTGGGACTACACCGTAGGATTCAATGTGGATCCCAACAGAACTGTCAGCTATCGGAGCGTAGCCGGAGTAGAGCAGGACAAACTGGCTTTCAATCGTGTCAATCTCTCCCCGATGCTCCGAATCAACTACAAACCGAGCAGGACTACCAACCTCCGAGTGGACTACCGAGGACGCACGACACAACCATCCATCAATCAGATCGCTCCCGTTCAGGACATCACGAATCCGCTATTCGTGACGGAAGGCAATCCCGGTCTGAAGCCGAGCTATTCCAACAATGTGATGGCCATGTTCTCGGACTTCGATGCCAAAAGTCAGCGAGCTTTCAACATTGTTTTCTTCGGCAACTATACATTCGACGACATCGTCCCCAATACGCACTACGATCCGTCTACAGGGATCCGTACCACTCGTTACGAAAACGCCTCCGGTACGTGGCAAGCGAATCTTCATGGGACACTATCGCTTCCACTCAAGAACAGGGCATTTTCTTTCAGGATGTCCTTGTTCAACAGGTTGGCCGAAGGACAAAGCTTCATCAATGACGATAAGAACAAAGCTCTCTCTTTCCGAACGAGGGAACGCCTGACGCTGACCTATCGCAACAATTGGATCGATACGAGTATCGGTGGCAATATCGGATTCTATATGGCGAATAATAGTCTGAGCGGACAGAAAGATTCTCGCACATACGATTTTGGCGGCAATTATCAAGTTGCCCTAACGCTTCCCTATGGATTCCGTATCGACAGCGATGTTGAATACAATACGAACTCCGGTTACAGCGGAGGATTCAGTCTGGACGAATGGCTTTGGAATGCTTCGCTTTCATACAGCTTCCTCCGTGACAAGGCCGGTACACTGCGTGTCAATGGCTATGACATCCTCGGTCAGCGGTCAAGTATCAGCCGTTCTGCTTCGGCCATCAATATAGAAGAGAGCATGTCCAATACGATCGGACGCTACGTGATGGTGGACTTTATCTACCGATTCAACGCCTTCAGTGGTGGTGGATCTCGCAGCGATCATCAGCGTGGCAATATGAATCGTCCGGGCCCACCTTTCGGCGGTGGCAGACGACCGTCC","7.30","0.77","98643","MIQANVQLVQSTGQVAVAAGATNEKGLFSLKTSQEGDYILRVSYVGYTTHDEKISLRNGQTITLKDISMNEDARLLQSVTVQAKAAEVVVRNDTLEFNAGSYTVAQGASIEELIKKLPGAEIGSDGKITINGKDISKILVDGKEFFSKDPQVAIKNLPADMVNKVQVLNKLSELSRMSGFDDGEEETVINLTVKPEKKKGLFGTLQAGYGTDQRYMAGGNVNRFDGNKQWTLIGSANNTNNMGFSEMDSEMGSMTFFSPQGGGRRGFGNSGGVTSSSMLGGNFSVEFSSALNTGGDARYGYNDKAIETTKRVENILAEGNTYMDENILERSFSHNGQARFRMQWKPSERTEVVFEPDLSISKIDGFFNDTYETKDATGISINKGSIHQTTQGNNFRLNGELDISHKLNDEGRTISASVSGGLTDEDGDGIYQAVLQSVETNQKQFNDNSNLQYRLRLSYVEPLGKNYFAQAILNRRFSRRNSDREVYRLGDDGQYSILDSQYGLSYSNEFTQYRIGLNLKKIAKTWDYTVGFNVDPNRTVSYRSVAGVEQDKLAFNRVNLSPMLRINYKPSRTTNLRVDYRGRTTQPSINQIAPVQDITNPLFVTEGNPGLKPSYSNNVMAMFSDFDAKSQRAFNIVFFGNYTFDDIVPNTHYDPSTGIRTTRYENASGTWQANLHGTLSLPLKNRAFSFRMSLFNRLAEGQSFINDDKNKALSFRTRERLTLTYRNNWIDTSIGGNIGFYMANNSLSGQKDSRTYDFGGNYQVALTLPYGFRIDSDVEYNTNSGYSGGFSLDEWLWNASLSYSFLRDKAGTLRVNGYDILGQRSSISRSASAINIEESMSNTIGRYVMVDFIYRFNAFSGGGSRSDHQRGNMNRPGPPFGGGRRPS","1806266 1803489","TIGR ID: PG1715","conserved hypothetical protein","Outer membrane, Extracellular","This sequence corresponds to gi:34397662 in Genbank.Its nearest neighbor in the NR database is gi:29349385 from Bacteroides thetaiotaomicron VPI-5482.","
InterPro
IPR008969
Domain
Carboxypeptidase regulatory region
SSF49464\"[2-72]TCarboxypepD_reg
InterPro
IPR012910
Domain
TonB-dependent receptor, plug
PF07715\"[94-168]TPlug
noIPR
unintegrated
unintegrated
SSF56935\"[76-856]TSSF56935


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 12:09:03 MDT 2001","","Tue Jun 26 10:56:32 MDT 2001","Tue Jun 26 10:56:32 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Tue Jun 26 10:56:32 MDT 2001","Tue Jun 26 10:56:32 MDT 2001","","","Tue Jun 26 11:00:47 MDT 2001","Tue Mar 8 14:41:28 2005","Thu Mar 1 11:32:22 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 40-262 have 30% similarity to PG1308, a hypothetical protein.Residues 22-646 have 22% similarity to PG0899, conserved hypothetical protein.Residues 21-168 have 24% similarity to PG1752, ton-B linked outer membrane receptor.","Tue Jun 26 11:00:47 MDT 2001","Tue Mar 8 14:41:28 2005","-41% similar to PDB:1WXR Crystal structure of Heme Binding protein, an autotransporter hemoglobine protease from pathogenic Escherichia coli (E_value = );-42% similar to PDB:2AS9 Functional and structural characterization of Spl proteases from staphylococcus aureus (E_value = );-61% similar to PDB:1CN3 INTERACTION OF POLYOMAVIRUS INTERNAL PROTEIN VP2 WITH MAJOR CAPSID PROTEIN VP1 AND IMPLICATIONS FOR PARTICIPATION OF VP2 IN VIRAL ENTRY (E_value = );-61% similar to PDB:1SID MURINE POLYOMAVIRUS COMPLEXED WITH 3'SIALYL LACTOSE (E_value = );-61% similar to PDB:1SIE MURINE POLYOMAVIRUS COMPLEXED WITH A DISIALYLATED OLIGOSACCHARIDE (E_value = );","","","No significant hits to the Pfam 11.0 database","Tue Jun 26 10:56:32 MDT 2001","34541346","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Tue Mar 8 14:41:28 2005","","1","","","PG1715" "PG1496.1","1806381","1806647","267","ATGTCGATTTTCCACATTCGGACCTCCCCGCAACTGTCGGGAAACGGCGACAAGTATCAAGGAGCAAGTCGGATGGCATTCTTCTTTGGTATTATTTGCCTCAAGGGAGCAAACATGTATCTATTCTATATATTTCCGCTCATGGAAAAAGGTGAAGAAATTCCGTCGAAAAGTAGTCGCTTACAGAGAAATCACGAACGAAAAATGATGAGATTGCGGTGCGATTTTTGGGGAAAATACGCGCCTAAATTTTTTCGTTTTGGTTCG","","","10485","MSIFHIRTSPQLSGNGDKYQGASRMAFFFGIICLKGANMYLFYIFPLMEKGEEIPSKSSRLQRNHERKMMRLRCDFWGKYAPKFFRFGS","","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm, Extracellular","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
tmhmm\"[25-45]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG1496.2","1806900","1806628","273","ATGCTTCATAATAATCGGGCGGTTGCAGCTAAAATCTCCGAAAGATACGTGTTTTTGGAGAAAGACGGCTCCCCGGGTCTGTGTCCCGAAGGCTCTTCCATCCGAGCTTTTCCTCCACTGCGGGAACGAAAAAACAGCAGATGGAGGGCATTTCCCTCTCCGACGTTTTTACGTCTGAAAAAATGCTCGCGCGTGGATCGTAAAAACGTGGCGCGAGAAATTTTTCGTTTTGGCGCGAGAAGTCAAAAAATTACGAACCAAAACGAAAAAATT","","","10558","MLHNNRAVAAKISERYVFLEKDGSPGLCPEGSSIRAFPPLRERKNSRWRAFPSPTFLRLKKCSRVDRKNVAREIFRFGARSQKITNQNEKI","","TIGR ID: PG1718","hypothetical protein","Periplasm, Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541347","","","","","","1","","","PG1718" "PG1497","1806892","1808739","1848","ATGAAGCATTTTTTCAGTGCTATACGCCGTTTCGTGCCACCCTATAAGAAGTATGTGGCATGGAGCGTGGTGGCCAATACGCTGAGTGCACTGCTCAACCTATTGTCTTTCTCTCTGATCATGCCCATCCTGCGTATCCTCTTCAGGATAGACCGGCAGGTGACCACTTACATGCCGATGGATGGTATAGACTGGGGTAGCATGGATGGCTGGAAAGCTGCCGGAGCCGCTCTGAGCAATAATTTCAGCTGGTACGTAAGCCAACTTATAGAGGTACGTGGAGCATCGTTTACGCTTATCATGCTGGGGATTTATCTGGTGGTGATGACCTTTCTGAAAGTGGCTTCGATGTACCTCGGATTCTACAGCATGATTCCGCTGCGCACGGGAGTGGTGCGGGACATTCGCAATCAGATCAACGATAAGATCCTCGGACTCCCCCTTTCCTTTTTCAGCGAAGAGCGCAAGGGCGATATCATGGCACGCATTTCGGGGGATGTGAATGAGATAGAGACTTCGGTCATCAGTTCGCTGGATATGTTGCTGAAAAATCCGATCCTCATTTCCATCTACCTGATCGGGATGATCCTCATCAGCTGGCAGCTCACCCTTTTCGTCTTCATCCTCCTACCGATAGCCGGAGGGCTGATGGGTAAGGTGGGCAAAACTCTCAAGCGCAAGAGTCTGGAAGGGCAGAATCAGTGGGGAAGCCTGATGAGCCAGATAGAAGAAACGCTTGGCGGCCTGCGTATCATCAAGGCATTCAATGCCGAGAAAAAGATGCAGGATCGGTTCCATCGTGCCAACGAGCAGTTTCGCCGTACGACGATGAAGGTCTTCCGCCGCCAGCAGTTGGCACATCCGATGAGCGAATTTCTCGGCACAGCTACCATAGCCATCGTACTGTGGTATGGGGGTACCCTTATCCTGAACAATACGAGCGAGATCGATGCTTCCACCTTTATATATTATCTGGTGATCTTCTACAGTCTGATCAATCCGGTCAAGGAGCTGAGCAAGGCATCCTACGCCATTGAAAAGGGGTTGGCCTCCATGTCGCGCGTGGACAAGATCCTGATGGCCGAGAACGACATCAAAGATCCCGAACAGCCCCACCCCGTGGTGTTCGAAGAGGAGGTCGTTTACGACCATGTGTGGTTCCGCTACGGCGAAGACTGGGTGCTGCGCGATGTCTGTCTGACAATCCCGAAGGGCAAGACGGTGGCATTGGTCGGTCAGAGCGGATCGGGCAAGAGTACGATCGTGGATCTGCTACCACGGTTCTACGACCTCCAGCAAGGCCGTGTGCTGCTAGACGGGACGGATGTGCGGGATGTAAAACTACACGAGTTGCGTGAGCTGATCGGCAACGTCAATCAGGAAGCAATCCTCTTCAACGATACCGTCTTCAACAACATCGCTTTCGGCAAAGAGAATGCCACGGCCGAAGAGGTGGAGCATGCAGCACGCATAGCCAATGCGCACGACTTCATCATGCAGATGCCCGAGGGTTATCAGTCCAACATCGGCGACCGTGGAGGCAAGCTGTCGGGAGGCCAGCGGCAACGGATCAGTATTGCACGAGCCATTTTGAAGAATCCGCCGATTTTGATTCTGGATGAAGCCACGTCAGCACTCGACACGGAAAGTGAACGTTTGGTACAGAATGCCATTGAGAAACTGATGGCCAATAGAACAGCTATCGTCATAGCGCACCGACTGACCACGATCCGCAATGCGGATATTATATGCGTACTGCATGAGGGGCGTATCGTGGAGCAAGGACGCCACGATGAACTGTATGCCCTGGGAGGATACTACACGAAGCTATGCGATATGAACGCAGAA","8.00","3.55","69519","MKHFFSAIRRFVPPYKKYVAWSVVANTLSALLNLLSFSLIMPILRILFRIDRQVTTYMPMDGIDWGSMDGWKAAGAALSNNFSWYVSQLIEVRGASFTLIMLGIYLVVMTFLKVASMYLGFYSMIPLRTGVVRDIRNQINDKILGLPLSFFSEERKGDIMARISGDVNEIETSVISSLDMLLKNPILISIYLIGMILISWQLTLFVFILLPIAGGLMGKVGKTLKRKSLEGQNQWGSLMSQIEETLGGLRIIKAFNAEKKMQDRFHRANEQFRRTTMKVFRRQQLAHPMSEFLGTATIAIVLWYGGTLILNNTSEIDASTFIYYLVIFYSLINPVKELSKASYAIEKGLASMSRVDKILMAENDIKDPEQPHPVVFEEEVVYDHVWFRYGEDWVLRDVCLTIPKGKTVALVGQSGSGKSTIVDLLPRFYDLQQGRVLLDGTDVRDVKLHELRELIGNVNQEAILFNDTVFNNIAFGKENATAEEVEHAARIANAHDFIMQMPEGYQSNIGDRGGKLSGGQRQRISIARAILKNPPILILDEATSALDTESERLVQNAIEKLMANRTAIVIAHRLTTIRNADIICVLHEGRIVEQGRHDELYALGGYYTKLCDMNAE","1806892 1808739","The function of this ABC element may be in relation to multidrug resistance.From gi:127339:MsbA of E. coli is involved in the secretion of lipil A and possibly also glycerophospholipid transport. Belongs to the ATP-binding transport protein family.From gi:1170902:Mdr1 (multi-drug resistance protein) of Rattus norvegicus is an energy-dependent efflux pump responsible for decreased drug accumulation in multi-drug resistant cells. Belongs to the ATP-binding transport protein family.See ABC Transporters Analysis.TIGR ID: PG1719","ABC transporter, ATP-binding protein, MsbA family; MSD-NBD fusion protein","Inner membrane, Cytoplasm","This sequence is orthologous to CT264 and to BT3386.Numerous significant hits in gapped BLAST to ABC transporter, ATP-binding protein, MsbA; e.g. residues 99-610 are 36% similar to AE004263 of Vibrio cholerae, residues 4-610 are 36% similar to AE002068 of Deinococcus radiodurans, residues 10-610 are 33% similar to Z99108 of Bacillus subtilis. Also many significant hits to multidrug resistance p-glycoprotein; ABC transporter-like protein; e.g. residues 158-610 are 40% similar and residues 84-604 are 33% similar to AB026644 of Arabidopsis thaliana, residues 132-610 are 36% similar and residues 101-616 are 30% similar to P43245 of Rattus norvegicus.","
InterPro
IPR001140
Domain
ABC transporter, transmembrane region
PF00664\"[98-335]TABC_membrane
InterPro
IPR003439
Domain
ABC transporter related
PD000006\"[516-558]TABC_transporter
PF00005\"[405-589]TABC_tran
PS00211\"[516-530]TABC_TRANSPORTER_1
PS50893\"[380-613]TABC_TRANSPORTER_2
InterPro
IPR003593
Domain
AAA+ ATPase, core
SM00382\"[404-592]TAAA
InterPro
IPR011527
Domain
ABC transporter, transmembrane region, type 1
PS50929\"[20-347]TABC_TM1F
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[342-611]TG3DSA:3.40.50.300
PTHR19242\"[5-56]T\"[99-613]TPTHR19242
PTHR19242:SF91\"[5-56]T\"[99-613]TPTHR19242:SF91
SSF52540\"[369-613]TSSF52540
SSF90123\"[8-371]TSSF90123


","BeTs to 12 clades of COG1132COG name: ABC-type multidrug/protein/lipid transport system, ATPase componentFunctional Class: RThe phylogenetic pattern of COG1132 is ---KYQVCEBRHUJGP--inXNumber of proteins in this genome belonging to this COG is 3","***** IPB001617 (ABC transporters family) with a combined E-value of 1.5e-11. IPB001617A 410-425 IPB001617B 517-528","Residues 199-310 are 27% similar to a (ATP-BINDING TRANSPORT PROTEIN TRANSMEMBRANE TRANSPORTER) protein domain (PD000147) which is seen in MSBA_HAEIN.Residues 560-600 are 60% similar to a (ATP-BINDING TRANSPORT PROTEIN TRANSMEMBRANE MULTIDRUG) protein domain (PD000383) which is seen in O80725_ARATH.Residues 99-332 are 18% similar to a (PROTEIN ATP-BINDING TRANSPORT MULTIDRUG RESISTANCE HETA) protein domain (PD137535) which is seen in O86150_CAMJE.Residues 448-513 are 53% similar to a (ATP-BINDING TRANSPORT PROTEIN TRANSMEMBRANE TRANSPORTER) protein domain (PD000101) which is seen in Q19734_CAEEL.Residues 395-445 are 64% similar to a (ATP-BINDING TRANSPORT PROTEIN TRANSPORTER ABC) protein domain (PD000005) which is seen in P71082_BACSU.Residues 515-558 are 81% similar to a (ATP-BINDING TRANSPORT PROTEIN TRANSPORTER ABC) protein domain (PD000006) which is seen in Q47908_FRANO.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Wed Jun 16 11:35:04 2004","Wed Jun 16 11:30:05 2004","Mon Dec 22 10:49:10 2003","Thu Mar 15 15:27:20 MST 2001","Thu Mar 15 15:27:20 MST 2001","Thu Mar 15 15:27:20 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1497 is 24-34% similar to the following:PG0233 ABC transporter ATPasePG0254 ABC transporter/ATP-binding proteinPG0566 ABC transporter proteinPG0584 ferric enterobactin transport protein/iron(III) dic... PG0605 ABC transport system component; ATP-binding proteinPG0618 ABC transport component; ATPase componentPG0844 ABC transporterPG0903 ABC transporter ATP binding protein PG0921 oligopeptide ABC transporter PG1048 ABC transporter, ATP-binding proteinPG1049 ABC transporter proteinPG1084 ABC transporter ATP-binding proteinPG1211 ABC transporter (exact function unknown)PG1451 ABC transporter, ATP-binding proteinPG1477 ABC transporter ATPase PG1533 ABC transporterPG1917 cell-division ATP-binding proteinPG1923 ABC transporter, ATP-binding proteinPG1929 ABC transporter protein,NBD-NBD fusion protein","Thu Mar 15 15:33:44 MST 2001","Wed Jun 16 11:30:05 2004","-56% similar to PDB:2HYD Multidrug ABC transporter SAV1866 (E_value = 5.8E_85);-56% similar to PDB:2ONJ Structure of the multidrug ABC transporter Sav1866 from S. aureus in complex with AMP-PNP (E_value = 5.8E_85);-71% similar to PDB:1MT0 ATP-binding domain of haemolysin B from Escherichia coli (E_value = 4.1E_54);-71% similar to PDB:2FF7 The ABC-ATPase of the ABC-transporter HlyB in the ADP bound state (E_value = 4.1E_54);-71% similar to PDB:2FFB The crystal structure of the HlyB-NBD E631Q mutant in complex with ADP (E_value = 9.0E_54);","","","Residues 62 to 335 (E-value = 3e-38) place PG1497 in the ABC_membrane family which is described as ABC transporter transmembrane region (PF00664)Residues 405 to 589 (E-value = 3.2e-58) place PG1497 in the ABC_tran family which is described as ABC transporter (PF00005)","Mon Dec 22 10:49:10 2003","34541348","","","Karow,M. and Georgopoulos,C. The essential Escherichia coli msbA gene, a multicopy suppressor of null mutations in the htrB gene, is related to the universally conserved family of ATP-dependent translocators. Mol. Microbiol. 7 (1), 69-79 (1993). PubMed: 8094880. Silverman,J.A., Raunio,H., Gant,T.W. and Thorgeirsson,S.S. Cloning and characterization of a member of the rat multidrug resistance (mdr) gene family. Gene 106 (2), 229-236 (1991). PubMed: 1682220.","","Thu Jun 7 10:03:48 MDT 2001","1","","","PG1719" "PG1498","1808758","1810284","1527","GTGAAGAAAAGAAAACCGATGGACTACAAGACTCGCATCATATATGCCTTGTTGAAAAGCAGGCTGAAAACCATCGACACCTATGCCTCTCGAGCTGAGGAAATACAAGACCGCCAGCTCAGGCGCATCCTGTCGAGTGCAGCCTACACATCCACCGGTATCCGCTACGGGTTCAATCGCATAAGCTCGAAAGAGTGTTTTGCTCGCAACGTACCTGTTCGCGATTACGAATCGACACAAGCCGAAATAGAACGAATGCTTCGTGGCGAAAAAGACGTGCTCTGTCCGGGGCGTTGTACATGGTTTGCCAAAAGCAGCGGCACCACCAATAGCAAAAGCAAGTTCATCCCCGTTCCATACCGCCACCTGCACTATTGCCATTATCAAGGGGGGAAAGACTCCCTATCGTTATACCTACGCAATAGACCTGACAGTCGTTTCTTCACGACTAAAGGGTTGGTACTGGGTGGCAGTCACGCCCCTGTATCCATGAATGCCGATATACAAGTCGGCGACTTGAGTGCCATCCTTGTCGAGAATATGCCTGTGCTCGGCAACTGCATGCGCGTACCCTCGAAAGAAACGCTCTTGATGGACGAGTGGACGGAGAAGCTCAAAGCCGTAGTTCGCGAAGTGGCGCATGTACGAGTCGGAAGCTTGTCCGGCGTACCGTCTTGGATCCTTGTCTTGATCAAGGATGTACTCGCAGCTACAGGCCGAGAGACTTTGTCGGATGTATGGCCGGAATTGGAAGTATTTTTCCACGGCGGTATCAGCTTTGCTCCCTATCGAGCGCAGTATGAGAAGCTGATACCTTCTTCACGGATGCAGTATATGGAGACGTATAATGCTTCGGAAGGTTTCTTCGGTATTCAGGATGATCCGAAGGATAGCGGTATGCTGCTGATGCTCGATTACGGAGTTTACTACGAATTCATCCCGATGGAACATTTCGGCCGCCCCGAAGCGGAAGCCATCCCACTCGAAGGAGTGGAAAAAGGGCGCAATTATGCCATGATTATCAGTACGCTCGGAGGACTCTACCGTTATGTACTGGGCGATACCGTACGATTCACATCGGTGAAACCATACAAGATAGTCATCACCGGTCGCACCAAGCACTATATCAACGCATTCGGAGAAGAGCTGATGGTAGACAATAGCGACAAGGCTTTGGCGGCGACATGCAAGCGATTTGGCGTGCAGGCAGTGGACTATACGGTAGCGCCCCACTTTTTTTCGGAAGAGGGCAAAGGACGGCACGACTGGCTGATCGAATTTGTCTCTGCACCGGCTGATCCGAATGCGTTTGCCAAAGCATTGGATGCCGAGTTGCAAACGCTCAATTCCGACTACGAAGCCAAGCGGTATGCAGACATGACTCTGCTCCCACTCTCCCTGACGATCGCTCGCTCCGGTCTCTTCCACGATTGGCTTACGGAGCAGGGCAAGCTGGGAGGACAGCACAAAGTGCCTCGTCTGAGCAATACACCGGAAATAATGAGGTCTATCCTCGAAATGAACAGT","8.70","7.64","57531","VKKRKPMDYKTRIIYALLKSRLKTIDTYASRAEEIQDRQLRRILSSAAYTSTGIRYGFNRISSKECFARNVPVRDYESTQAEIERMLRGEKDVLCPGRCTWFAKSSGTTNSKSKFIPVPYRHLHYCHYQGGKDSLSLYLRNRPDSRFFTTKGLVLGGSHAPVSMNADIQVGDLSAILVENMPVLGNCMRVPSKETLLMDEWTEKLKAVVREVAHVRVGSLSGVPSWILVLIKDVLAATGRETLSDVWPELEVFFHGGISFAPYRAQYEKLIPSSRMQYMETYNASEGFFGIQDDPKDSGMLLMLDYGVYYEFIPMEHFGRPEAEAIPLEGVEKGRNYAMIISTLGGLYRYVLGDTVRFTSVKPYKIVITGRTKHYINAFGEELMVDNSDKALAATCKRFGVQAVDYTVAPHFFSEEGKGRHDWLIEFVSAPADPNAFAKALDAELQTLNSDYEAKRYADMTLLPLSLTIARSGLFHDWLTEQGKLGGQHKVPRLSNTPEIMRSILEMNS","1808758 1810284","Appears to be a variable region where extra residues have been added around 100-200. This region is different for the hits found.TIGR ID: PG1720","auxin-responsive protein homologue","Cytoplasm","Residues 243-501 and 22-117 have 27% and 28% similarity to AL161591, A. thaliana auxin-responsive GH3-like protein (P = 6e-11 and 0.007).This sequence is similar to BT3355.","
InterPro
IPR004993
Family
GH3 auxin-responsive promoter
PF03321\"[20-500]TGH3


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Mon Dec 22 10:41:10 2003","Tue May 15 15:27:13 MDT 2001","Mon Dec 22 10:41:10 2003","Thu Mar 1 11:47:25 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 11:47:25 MST 2001","-45% similar to PDB:1MD9 CRYSTAL STRUCTURE OF DhbE IN COMPLEX WITH DHB AND AMP (E_value = );-45% similar to PDB:1MDB CRYSTAL STRUCTURE OF DhbE IN COMPLEX WITH DHB-ADENYLATE (E_value = );-45% similar to PDB:1MDF CRYSTAL STRUCTURE OF DhbE IN ABSENCE OF SUBSTRATE (E_value = );","","","Residues 20 to 500 (E-value = 5.1e-10) place PG1498 in the GH3 family which is described as GH3 auxin-responsive promoter (PF03321)","Tue May 15 15:26:32 MDT 2001","34541349","Thu Mar 1 12:38:03 MST 2001","","","","","1","","","PG1720" "PG1499","1810427","1812532","2106","ATGACCAAGGAGGAGATGCGCAATGCCATTTTGGACATATTCCAAAGCAATCCTCAGAGCGTGATGAACTACAAGCAGGTAAGCCATCTGATGGGAGTAGAAGCTGCACCACAAAAGCTAATGGTGAACTCCCTGATGGAAGACATGGCTGTGGATGACATCCTGCATGAGATAGAGCGCGGACGCTATCGGTACAATGCCTTGGGATTGATTGTCATAGGCACTTTTGAGCGTCGGTTCAATGGCCGCAATTCGTTTATTCCCGAAGGGGGCGGAACGCCCATTTTCATTGCCGAAAGAAATTCGGCACATGCCATGGACGGTGACAAAGTGAAAGTACAACTCTTTGCCAAACGTCGTGGTCGCGCGCCGGAAGCCGCCGTGATCGAGATCATAGAACAGAAGCAGGCCACTTTCGTCGGCAAGATCCAAATCAATAGAGACTTTGCTTTCCTTGTTACGGAAGATCGCACCTTAGCGAATGATATTTTCATCCCCAAGGACAACCTCGGCAACGCCAAAAACGGCGATAAGGTAATAGTCCGAATACTCGAATGGCCGGAGCAATCCAAGAATCCCATCGGAGAGGTACAAGCCGTATTGGGACCGGCCGGAGACAACGATGCCGAGATGAATGCCATTTTGGCCGAATTCGGATTGCCTTATGTCTATCCCCAAGAGGTGGAAGAGGCAGCCGACCGTTTGGATGGGAAGATCACAGAAGAAGAGCTTGCCCGAAGAGAAGATTTTCGGTCGATACTCACCTTCACCATCGACCCGAAGGATGCCAAGGACTTCGATGATGCCATATCGTTCCGTCCGCTGGAGGATGATTGCTATGAGGTGGGCGTACATATCGCCGATGTCTCGCACTACGTAACCGAGGGCGGGATCATAGATCAGGAAGCATACAACCGTGCCACAAGTATCTATCTCGTGGATCGCACCATCCCGATGCTCCCCGAACGCCTCTGCAACGACCTTTGTTCCCTCCGCCCCGACGAAGAAAAATATGCCTATAGCTGCATATTCCGGATGAATGACGAAGCCAAAGTATTGGATTATCGCATCTGCCACTCCGTGATCAAGAGCGACCGCCGGTTCGCTTACGAAGAGGCACAAGCCGTGATCGAGACCGGCGAAGGCGACTGCAAGGAGGCCATTCTCAAACTCAACGAGCTGGCACAGCGACTTCGCAAAGAACGATTCCAAAACGGAGCGATTGCTTTCGAAAGAAAAGAAGTTCGCTTCGAAATAGATGAGAAAGGTCGTCCTCTGGGTGTAATCGTGAAGGAGAGCAAGGAAGCCAACAAGCTAATCGAAGAGTTCATGCTTCTGGCCAATAGGACGGTAGCCCGACATATAGGCGAAGAGACCCAAGGGAAACGAGCCAAGACCTTCGTTTATCGTATCCACGACCTGCCCGATCCCGACAAATTGGAGACCTTGTCGGACTTCATCCGCCGATTCGGTTACAAGTTGCGCACCACAGGTAGTAATGTGGAGGTAAGCAAGAGCATCAATTCGCTTCTGGACAACATCCAAAACAAGCCGGAAGAAAATTTGATCTCTACCGTTGCCATACGCTCCATGGCTAAGGCCATTTACTCGACGGACAACATCGGCCACTACGGATTGGCATTCGATTTCTACACCCACTTCACTTCGCCCATTCGTCGCTATCCGGACTTGATGGTGCACCGATTGCTGACGAAATACCTTTCGGGTGGAAGTTCCGTAGACAAAAATGACTATGAGGAAAAGTGCAAGCATTCATCTGCAATGGAGCAATTGGCAGCTTCGGCCGAACGCGCTTCCATCAAATACAAACAGGTGGAGTTTATGTCCGAACACCTCGGCAAAGTATTCGATGGTGTAATATCGGGCGTCACCGAATGGGGATTGTACGTAGAGCTGAAGGAAAATATGTGCGAAGGTCTCATACCCATCCGCTGTCTCGACGACGACTACTACGAGTACGACGACAAGAACTTCTGCCTCATCGGGCGTCGCTATCGTCACCGCTACAGTCTGGGCGATGCCATCACCGTACGTGTTGCCCAAGCCAATCTGGACAGAAAGCAACTCGACTTCGAACCCGTAAGC","5.20","-19.99","80161","MTKEEMRNAILDIFQSNPQSVMNYKQVSHLMGVEAAPQKLMVNSLMEDMAVDDILHEIERGRYRYNALGLIVIGTFERRFNGRNSFIPEGGGTPIFIAERNSAHAMDGDKVKVQLFAKRRGRAPEAAVIEIIEQKQATFVGKIQINRDFAFLVTEDRTLANDIFIPKDNLGNAKNGDKVIVRILEWPEQSKNPIGEVQAVLGPAGDNDAEMNAILAEFGLPYVYPQEVEEAADRLDGKITEEELARREDFRSILTFTIDPKDAKDFDDAISFRPLEDDCYEVGVHIADVSHYVTEGGIIDQEAYNRATSIYLVDRTIPMLPERLCNDLCSLRPDEEKYAYSCIFRMNDEAKVLDYRICHSVIKSDRRFAYEEAQAVIETGEGDCKEAILKLNELAQRLRKERFQNGAIAFERKEVRFEIDEKGRPLGVIVKESKEANKLIEEFMLLANRTVARHIGEETQGKRAKTFVYRIHDLPDPDKLETLSDFIRRFGYKLRTTGSNVEVSKSINSLLDNIQNKPEENLISTVAIRSMAKAIYSTDNIGHYGLAFDFYTHFTSPIRRYPDLMVHRLLTKYLSGGSSVDKNDYEEKCKHSSAMEQLAASAERASIKYKQVEFMSEHLGKVFDGVISGVTEWGLYVELKENMCEGLIPIRCLDDDYYEYDDKNFCLIGRRYRHRYSLGDAITVRVAQANLDRKQLDFEPVS","1810340 1812532","From Prosite PDOC00904: Escherichia coli and related bacteria ribonuclease II (EC 3.1.13.1) (RNaseII) (gene rnb) [1]. RNase II is an exonuclease involved in mRNA decay. It degrades mRNA by hydrolyzing single-stranded polyribonucleotides processively in the 3' to 5' direction.Bacterial protein vacB. In Shigella flexneri, vacB has been shown to be required for the expression of virulence genes at the posttranscriptional level.TIGR ID: PG1721","ribonuclease II","Cytoplasm","Significant hits to ribonucleases / VacB proteins with gapped BLAST; e.g. residues 16-698 are 35% similar to vacB protein (AE001743) of Thermotoga maritima, residues 42-697 are 33% similar to ribonuclease (AEE001895) of Deinococcus radiodurans, residues 71-702 are 32% similar to VacB protein (P21499) of E. coli.This sequence is similar to BT3077.","
InterPro
IPR001900
Domain
Ribonuclease II and R
PF00773\"[247-576]TRNB
PS01175\"[543-567]TRIBONUCLEASE_II
InterPro
IPR003029
Domain
RNA binding S1
PF00575\"[616-701]TS1
SM00316\"[618-701]TS1
PS50126\"[620-701]TS1
InterPro
IPR004476
Family
RNase II and RNase R, bacteria
TIGR00358\"[54-701]T3_prime_RNase
InterPro
IPR011805
Family
Ribonuclease R, bacterial
TIGR02063\"[4-702]TRNase_R
InterPro
IPR012340
Domain
Nucleic acid-binding, OB-fold
G3DSA:2.40.50.140\"[620-702]TOB_NA_bd_sub
InterPro
IPR013223
Domain
Ribonuclease B, OB region N-terminal
PF08206\"[74-131]T\"[141-197]TOB_RNB
noIPR
unintegrated
unintegrated
PTHR23355\"[71-699]TPTHR23355
PTHR23355:SF9\"[71-699]TPTHR23355:SF9
SSF50249\"[617-698]TNucleic_acid_OB


","BeTs to 10 clades of COG0557COG name: ExoribonucleasesFunctional Class: KThe phylogenetic pattern of COG0557 is ----YqvCEb-Hujgp-lin-Number of proteins in this genome belonging to this COG is 1","***** IPB001900 (Ribonuclease II family) with a combined E-value of 5.8e-50. IPB001900A 247-271 IPB001900B 317-337 IPB001900C 439-448 IPB001900D 551-568","Residues 620-701 are 35% similar to a (ACETAZOLAMIDE CONFERRING RESISTANCE) protein domain (PD139377) which is seen in ZAM_SYNY3.Residues 391-615 are 42% similar to a (PROTEIN HYDROLASE NUCLEASE HOMOLOG VACB RIBONUCLEASE II) protein domain (PD003083) which is seen in O32231_BACSU.Residues 619-699 are 44% similar to a (PROTEIN RIBOSOMAL S1 RNA-BINDING 30S REPEAT) protein domain (PD000709) which is seen in O32231_BACSU.Residues 616-695 are 30% similar to a (VACB PROTEIN HOMOLOG HYDROLASE) protein domain (PD042373) which is seen in VACB_MYCGE.Residues 10-377 are 33% similar to a (PROTEIN HYDROLASE NUCLEASE VACB) protein domain (PD003098) which is seen in O32231_BACSU.","","Thu Jun 14 12:09:15 MDT 2001","","Thu Jun 14 12:09:15 MDT 2001","Thu Jun 14 12:09:15 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:09:15 MDT 2001","Thu Jun 14 12:09:15 MDT 2001","","Fri Dec 19 10:53:06 2003","Wed Mar 22 11:19:57 MST 2000","Fri Dec 19 10:53:06 2003","Wed May 23 13:30:35 MDT 2001","Tue Jun 26 11:34:09 MDT 2001","Tue Jun 26 11:34:09 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Wed Apr 19 09:11:58 MDT 2000","Wed May 23 13:30:35 MDT 2001","-43% similar to PDB:2ID0 Escherichia coli RNase II (E_value = 3.8E_40);-43% similar to PDB:2IX0 RNASE II (E_value = 3.8E_40);-43% similar to PDB:2IX1 RNASE II D209N MUTANT (E_value = 1.5E_39);","","","Residues 168 to 538 (E-value = 1.4e-122) place PG1499 in the RNB family which is described as RNB-like protein (PF00773)","Tue Jun 26 11:34:09 MDT 2001","34541350","","","Tobe T, Sasakawa C, Okada N, Honma Y, Yoshikawa M. vacB, a novel chromosomal gene required for expression of virulence genes on thelarge plasmid of Shigella flexneri. J Bacteriol 1992 Oct;1 74(20):6359-67. PubMed: 1400189.","","Wed Apr 19 09:11:58 MDT 2000","1","","","PG1721" "PG1501","1813212","1813463","252","ATGGCAAATCATATTTCATCAGAGAAGCGAATTCGTCAGACAAATGCACGCAGACTGCACAATCGTTACTATGCCCGTACGGCTCGTAATGCAGTGAAAGCGTTCCGTGCACTGACGGACCGTACTGAAGCTGAAAAGAAATACCCCGTATTGGCATCGATGCTTGATCGCTTGGCCGGCAAGAATATTATTCACAAGAATAAAGCCGCCAATCTGAAGTCAAAGCTCGCTCGCCGCATCAATACATTAGCG","12.10","16.70","9670","MANHISSEKRIRQTNARRLHNRYYARTARNAVKAFRALTDRTEAEKKYPVLASMLDRLAGKNIIHKNKAANLKSKLARRINTLA","1813212 1813463","TIGR ID: PG1723","hypothetical protein","Cytoplasm, Periplasm","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR002583
Family
Ribosomal protein S20
PD004231\"[13-83]TRibosomal_S20p
G3DSA:1.20.58.110\"[6-81]TRibosomal_S20
PF01649\"[2-82]TRibosomal_S20p
TIGR00029\"[1-84]TS20
SSF46992\"[3-83]TRibosomal_S20p


","BeTs to 9 clades of COG0268COG name: Ribosomal protein S20Functional Class: JThe phylogenetic pattern of COG0268 is -----qvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** PF01649 (Ribosomal protein S20) with a combined E-value of 2.9e-21. PF01649A 2-29 PF01649B 55-77","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Mar 1 12:42:54 MST 2001","","Thu Mar 1 12:39:37 MST 2001","Thu Mar 1 12:39:37 MST 2001","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 12:39:37 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 2 to 82 (E-value = 2.8e-15) place PG1501 in the Ribosomal_S20p family which is described as Ribosomal protein S20 (PF01649)","Thu Mar 1 12:39:37 MST 2001","34541352","","","","","","1","","","PG1723" "PG1502","1813884","1814906","1023","ATGAAGAAAGACATTATCATATTGGGGATCGAAAGCTCCTGTGACGACACCTCTGCAGCCGTGGTCAGGAACGAAACTATGCTTAGCAACGTGATCGCGGGACAGGCCGTACACAAAGCCTACGGGGGAGTGGTTCCCGAACTGGCATCGCGTGCGCATCAGCAGAACATTGTCCCGGTAGTCAGCGAAGCTATCAAACGTGCCGGCATTCGCAAAGAAGAAATTGATGCCATCGCTTTCACTCGTGGACCGGGTTTGCTGGGATCGCTCCTTGTAGGCACCAGCTTTGCCAAGGGATTGTCTCTTTCATTGGGCATTCCGATGCTGGAAGTCAATCATCTTCATGCCCATGTCCTGGCCAACTTCCTTCGTGAGCCGGGTGAGGAGTCACAGCATCCCTCTTTCCCATTCCTGTGCTTGTTGGTTTCAGGGGGCAACTCTCAGATTATTCTGGTTCGCTCCCCTTACGATATGGAGGTAATAGGACAGACGATCGACGATGCAGCCGGAGAGGCTTTCGACAAATGTGCCAAGGTGATGGGGTTGGGTTATCCCGGAGGCCCCATCGTCAATAAGTTGGCTTCCGAGGGCAACCCCGATGCTTTCCGCTTTGCCCGTCCTCATGTGTCCGGTTACGACTATAGCTTCAGCGGACTCAAGACATCATTCCTCTATACTCTGCGCGACAAACTGGCCGAAGATCCCGACTTCATAGAAAAGAACAAGGCCGATCTGTGCGCATCTCTTCAGCACACGGTCATAGACATCTTGATGAAGAAACTTCGCCAAGCGGCCAAAGATCATAGCATCAAACAAGTGGCCTTGGCCGGCGGTGTATCGGCCAATACCGGACTGCGCGATGCTTTTCATGACCATGCCCGACGTTATGGCTGGACTGTATTCATTCCCAAATTCGCCTATACAACGGACAATGCTGCTATGGTAGCCATTTCCGGATACTATAAGTACTTGCAGGGCGATTTCTGCCCCATCGATGCTGTTCCATTCTCGCGCATCACGGTC","7.10","0.42","36912","MKKDIIILGIESSCDDTSAAVVRNETMLSNVIAGQAVHKAYGGVVPELASRAHQQNIVPVVSEAIKRAGIRKEEIDAIAFTRGPGLLGSLLVGTSFAKGLSLSLGIPMLEVNHLHAHVLANFLREPGEESQHPSFPFLCLLVSGGNSQIILVRSPYDMEVIGQTIDDAAGEAFDKCAKVMGLGYPGGPIVNKLASEGNPDAFRFARPHVSGYDYSFSGLKTSFLYTLRDKLAEDPDFIEKNKADLCASLQHTVIDILMKKLRQAAKDHSIKQVALAGGVSANTGLRDAFHDHARRYGWTVFIPKFAYTTDNAAMVAISGYYKYLQGDFCPIDAVPFSRITV","1813773 1814906","From PubMed: 1885539: Pasteurella haemolytica serotype A1 secretes a glycoprotease which is specific for O-sialoglycoproteins such as glycophorin A. The gene (designated gcp) codes for a protein of 35.2 kDa, and an active enzyme protein of this molecular mass can be observed in Escherichia coli clones carrying pPH1 (a recombinant plasmid). The glycoprotease is a neutral metalloprotease, and the predicted amino acid sequence of the glycoprotease contains a putative zinc-binding site.TIGR ID: PG1724","O-sialoglycoprotein endopeptidase (glycoprotease)","Cytoplasm, Extracellular","Numerous significant hits in gapped BLAST to O-sialoglycoprotein endopeptidases; e.g. residues 2-326 are 46% similar to Z99107 of Bacillus subtilis, residues 7-326 are 43% similar to U32735 of Haemophilus influenzae, residues 7-326 are 42% similar to AE000388 of Escherichia coli.This sequence is similar to BT0920.","
InterPro
IPR000905
Domain
Peptidase M22, glycoprotease
PD002367\"[242-287]TPeptidase_M22
PR00789\"[8-21]T\"[78-98]T\"[99-118]T\"[161-182]T\"[273-282]TOSIALOPTASE
PF00814\"[25-317]TPeptidase_M22
TIGR00329\"[8-316]Tgcp
PS01016\"[98-118]TGLYCOPROTEASE
InterPro
IPR009180
Family
Peptidase M22, O-sialoglycoprotein endopeptidase
PIRSF004537\"[5-341]TOsialglc_pptds
PTHR11735\"[99-339]TPept_M22_Osialgl
noIPR
unintegrated
unintegrated
SSF53067\"[4-326]TSSF53067


","BeTs to 17 clades of COG0533COG name: Metal-dependent proteases with possible chaperone activityFunctional Class: OThe phylogenetic pattern of COG0533 is amtkYQvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB000905 (Glycoprotease, (M22) metallo-protease family) with a combined E-value of 1.2e-81. IPB000905A 7-21 IPB000905B 42-53 IPB000905C 74-118 IPB000905D 138-150 IPB000905E 161-188 IPB000905F 212-223 IPB000905G 277-286 IPB000905H 307-316","Residues 7-319 are 47% similar to a (ENDOPEPTIDASE O-SIALOGLYCOPROTEIN HYDROLASE) protein domain (PD002367) which is seen in GCP_BACSU.","","Thu Jun 14 12:09:36 MDT 2001","","Thu Jun 14 12:09:36 MDT 2001","Thu Jun 14 12:09:36 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:09:36 MDT 2001","Thu Jun 14 12:09:36 MDT 2001","","Tue Jun 26 10:57:35 MDT 2001","Wed Mar 22 10:02:30 MST 2000","Thu Dec 4 10:24:40 2003","Wed May 23 17:58:52 MDT 2001","Tue Jun 26 10:57:35 MDT 2001","Tue Jun 26 10:57:35 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed May 23 17:58:52 MDT 2001","-52% similar to PDB:2GEL 2.05A crystal structure of Salmonella typhimurium YeaZ, form B (E_value = 8.8E_10);-52% similar to PDB:2GEM 2.1A crystal structure of Salmonella tyhpimurium YeaZ, a putative Gram-negative RPF, form-A (E_value = 8.8E_10);","","","Residues 6 to 288 (E-value = 1.5e-103) place PG1502 in the Peptidase_M22 family which is described as Glycoprotease family (PF00814)","Tue Jun 26 10:57:35 MDT 2001","34541353","","","Abdullah,K.M., Lo,R.Y. and Mellors,A. Cloning, nucleotide sequence, and expression of the Pasteurella haemolytica A1 glycoprotease gene. J. Bacteriol. 173 (18), 5597-5603 (1991). PubMed: 1885539.","","Thu Jun 7 10:14:33 MDT 2001","1","","","PG1724" "PG1503","1814909","1815388","480","ATGGATAATCCCGTTATTTCCGAACTGGCGAAGCTCTTGACTGAGCGAGGCCTTACATTGGCTACTGCCGAGAGTTGCACCGGAGGAACTATTGCTTCGGCTCTAACTCATTGCCCGGGAACCTCGACTTTTTTCAGAGGTTCGGTCGTGGCATATCAGAACGACATCAAAATACGCCTTTTGGGAGTGTCCCAAGCCGATATTGAAAGCCATACAGTAGTCAGCGAGCCTGTGGCACGCAGTATGGCTGTGGGTGTTTGCCGTCTGCTTGATGCCAATATAGGAATTGCGACTACGGGAATAGCCGGACCTTCGGGCGGTTCGGATCTGGTGCCGGTCGGCACAGTTTGGATCGCTCTTGTCATCGGTGAGGACACTTTCGCGCACTGTCTGCATCTTAGCGGTACTCGTGAGgAGGTTATCGCTCAGGCCACCGATCAGGCACTTTTGACTATATTTGACCTCTGTAAAAACAAATTG","4.90","-5.28","16634","MDNPVISELAKLLTERGLTLATAESCTGGTIASALTHCPGTSTFFRGSVVAYQNDIKIRLLGVSQADIESHTVVSEPVARSMAVGVCRLLDANIGIATTGIAGPSGGSDLVPVGTVWIALVIGEDTFAHCLHLSGTREEVIAQATDQALLTIFDLCKNKL","1814909 1815388","TIGR ID: PG1725","competence-damage protein CinA","Cytoplasm","Residues 2-137 have 46% similarity to D64002, Synechocystis sp. CinA like protein.Residues 2-149 have 46% similarity to Z97193, M. tuberculosis cinA. Residues 8-153 have 40% similarity to AE005498, E. coli orf, hypothetical protein.","
InterPro
IPR008136
Domain
CinA, C-terminal
PF02464\"[2-156]TCinA
TIGR00199\"[9-153]TcinA_cterm
InterPro
IPR012244
Family
Uncharacterised conserved protein CinA
PIRSF006161\"[4-160]TCinAdom
noIPR
unintegrated
unintegrated
PD004924\"[18-160]TCu-oxidase


","BeTs to 8 clades of COG1546COG name: Uncharacterized protein CinA/YgaD (competence- and mitomycin-induced)Functional Class: RThe phylogenetic pattern of COG1546 is -----qvcEbr-ujgp-----Number of proteins in this genome belonging to this COG is 1","***** BP04924 (PROTEIN CHEW CHEY PUTATIVE COMPETENCE-) with a combined E-value of 1.1e-36. BP04924A 20-47 BP04924B 48-86 BP04924C 87-117","Residues 7-118 are 51% similar to a (PROTEIN PUTATIVE CHE CHEY) protein domain (PD004924) which is seen in Q55760_SYNY3.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue May 15 15:32:08 MDT 2001","Thu Mar 1 12:48:23 MST 2001","Thu Mar 1 12:48:23 MST 2001","Thu Mar 1 12:48:23 MST 2001","Thu Mar 1 12:48:23 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 12:48:23 MST 2001","-53% similar to PDB:2A9S The crystal structure of competence/damage inducible protein CihA from Agrobacterium tumefaciens (E_value = 1.0E_17);-43% similar to PDB:2G4B Structure of U2AF65 variant with polyuridine tract (E_value = 1.0E_17);-55% similar to PDB:2OX4 Crystal structure of putative dehydratase from Zymomonas mobilis ZM4 (E_value = 1.0E_17);-52% similar to PDB:1KQ8 Solution Structure of Winged Helix Protein HFH-1 (E_value = 1.0E_17);","","","Residues 2 to 156 (E-value = 1.7e-57) place PG1503 in the CinA family which is described as Competence-damaged protein (PF02464)","Tue May 15 15:32:08 MDT 2001","34541354","","","","","","1","","","PG1725" "PG1504","1815424","1816839","1416","ATGAAGATGAATCGTTTATTTGCTATAGCAATCGCTACATTGCTTTCAGCAACAGCGACCTCGGCCCAGTCCGCAACGGGGAGCGATCAGGTCTGTCGCATCGGTATGCAGTACCAAATCAGCTATAATGAGCATTGGGGTGCCAATAGGCCTGTTATCATCACGGTAGAGCCGGGCAGTGCTGCCGATGTGGCGGGACTCAAACCCGGCGATGTCATTGAAAAAGTGGACGGAAAGGCTACTGCTTCGCTGGACGAAGTGGATTTTCAGAAGCTCCTGATCAGTGGAAACACGACCCGACTGGAGGTCTCCAATCTGTCGGGGACCAAGCAAATCACCTTAGGACGTGACTGCCAGTCTCGGTATATTCTGTCCGAACGTCAGTTGGCACGCTCTTTCAGCTTCTATAGCTTGCAGGATGCCAGCGATCGCCGCATCGTGCGTCCATACAAAGTCAAGACATCGACCAAAGCGGACTTTACCAATCTGCGTACATACTCTTTCGCAGCTTCTTCGCCCGACAACGAGGAGATCGATATAGCTGTCTACAAAGAAGTGGGCAAATATCTGAGTGCCATGGGAATGAAGGAGACGCTGAACAATCCCGATGTAATCGTCGATTGTTATTATCTGTTCGACAACAACAAGCTCTTTACCTCATTCAATAGTTCCGCCCCTCATAATTCTTGGCAGTATTCTCCGCGTGACAAGAGGATGATATCGATCCCCATTATGCCGGCCGGCACACAGGAGATCAATGCTCCTTATGTAATCCAGCTCGGCGTACGGCTGATCAATGCCAGGAACAATCTCCAAATTTTCTGGCAATGCGAGTCGAATGATTTCCTTTCCACACCTTTGGAGTTGGCAGAATATGCGCGATACAACGTGCCTTTGATGATGATGGAGTTCCCGTTTATTCGCTATCGTGAGAACCCGACGTTCCGTCTGCGGAGTCAGCGTTACTTCTATACGGGGCTGTACTATCAGGCCAACGACCTTTCGCTCGTGGCAGCAGTCGACCCCGACTCTCCGGCAGCAAAGGCAGGGCTGAAAGCCGGAGACCGTATCATCAGTATCAACGGTATTCCTGCTTTGTCCGGATCCGAAGAGTACTCCTCTGCTTACAAAGAGTTCATCAAAAAGAGCATGAAGTACCGTACTGAGGAAGACACCTTCACCGATGCCAATGGTTTGGCCGGGTGTCGTTATTGGTCACCCAAGAACTACGAGAAGATTGCACGCATGATGGCTCAGCCCAAATACAAGCCGGCTTTTGCCTATCTTTTCTTCTTCCGTTCGTACGTAAACGACCAGCAGATTACTTCGTGCGTCTTTCAGGTGCAGCGCGATGGTATGCCCGAATCTATTTTGGTGCAACCCGTCCTGCGCGACGAATCGTCAGTTACGCTTGAG","7.90","2.23","53332","MKMNRLFAIAIATLLSATATSAQSATGSDQVCRIGMQYQISYNEHWGANRPVIITVEPGSAADVAGLKPGDVIEKVDGKATASLDEVDFQKLLISGNTTRLEVSNLSGTKQITLGRDCQSRYILSERQLARSFSFYSLQDASDRRIVRPYKVKTSTKADFTNLRTYSFAASSPDNEEIDIAVYKEVGKYLSAMGMKETLNNPDVIVDCYYLFDNNKLFTSFNSSAPHNSWQYSPRDKRMISIPIMPAGTQEINAPYVIQLGVRLINARNNLQIFWQCESNDFLSTPLELAEYARYNVPLMMMEFPFIRYRENPTFRLRSQRYFYTGLYYQANDLSLVAAVDPDSPAAKAGLKAGDRIISINGIPALSGSEEYSSAYKEFIKKSMKYRTEEDTFTDANGLAGCRYWSPKNYEKIARMMAQPKYKPAFAYLFFFRSYVNDQQITSCVFQVQRDGMPESILVQPVLRDESSVTLE","1815388 1816839","TIGR ID: PG1726","hypothetical protein","Outer membrane, Periplasm","No significant hit found in gapped BLAST.","
InterPro
IPR001478
Domain
PDZ/DHR/GLGF
PF00595\"[22-104]T\"[337-364]TPDZ
SM00228\"[32-107]T\"[323-388]TPDZ
PS50106\"[18-93]T\"[314-368]TPDZ
SSF50156\"[28-120]T\"[311-364]TPDZ
noIPR
unintegrated
unintegrated
PTHR14191\"[336-363]TPTHR14191
SSF52096\"[264-363]TSSF52096


","BeTs to 7 clades of COG0265COG name: Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domainFunctional Class: OThe phylogenetic pattern of COG0265 is --t-yqvCEBRHuj--oLinXNumber of proteins in this genome belonging to this COG is 3","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 12:09:53 MDT 2001","","Thu Jun 14 12:09:53 MDT 2001","Thu Jun 14 12:09:53 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:09:53 MDT 2001","Thu Jun 14 12:09:53 MDT 2001","","","Thu Mar 1 12:50:17 MST 2001","Tue Jun 26 10:54:39 MDT 2001","Thu Mar 1 12:50:17 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 12:50:17 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 22 to 104 (E-value = 1.2e-06) place PG1504 in the PDZ family which is described as PDZ domain (Also known as DHR or GLGF) (PF00595)","Tue Jun 26 10:54:39 MDT 2001","34541355","","","","","","1","","","PG1726" "PG1505","1816852","1817712","861","ATGAAGCGGAGCAAATACCAGCTCGGACGCATAGGTCGTCTGACCATCGACCGTATCGTATCCATTGGGGCATATCTCGATGGAGGCGATACGGATATTTTGTTGCCCAATCGCTACCTCCCCTCAGATGCTGCACCTGGTATGGAAGTGGAGGTATTCGTCTATCATGACAATGAAGGCAGACTCATCGCCACCACCATGCGGCCGCTTGTCGAAGTGGGACAGGTGGCTCTGCTGCATGCCGTCTCCGTCACAGATAGTGGGGCGTATATGGAATGGGGCATACACAAGGATCTCTTCGTTCCTTTTCGAGAACAGACGCAGCTCATTCGAGAAGGCGGACGCTATTTCGTCTATGCTTATATCGATCATGTGAGCGGTAAGATCGTTGGCTCGGCGAAATTGTCCAAACATTTGGGCAACATTCCCCCATCCTACTCCCCTGGGGACAAGGTGTCGGCACTGGTTTACGAACGAATCGATCCGGGTTATCGCATGATCGTGGATCATACCCATTGGGGGATGATCTATTCCGATACGCTACCGATGCCTTTGGCTATCGGGGCACAAGTGAAAGCTTTCGTGATTCGCCTCCGTGACGATGGTAAAATCGACCTCTCGCTCAAACCGATAGGCTATGACCGTATTGACTCCGAGAGCGAACGACTGCTACACATGCTCCAAAGAAGAGGCGGTCGGCTTCCCATCGGGGATAAGAGTTCGCCCGAGGAAATTATGCAACATACCGGTATGAGCAAGAAAACGTTCAAAATGGCTGTCGGAATGCTCTATCGTCGCCGTTTGATCAGGATCACTCCTACGGCAATCACTCTGAATGAAACTGTATCTACTCCCGAAGCA","9.90","6.17","32187","MKRSKYQLGRIGRLTIDRIVSIGAYLDGGDTDILLPNRYLPSDAAPGMEVEVFVYHDNEGRLIATTMRPLVEVGQVALLHAVSVTDSGAYMEWGIHKDLFVPFREQTQLIREGGRYFVYAYIDHVSGKIVGSAKLSKHLGNIPPSYSPGDKVSALVYERIDPGYRMIVDHTHWGMIYSDTLPMPLAIGAQVKAFVIRLRDDGKIDLSLKPIGYDRIDSESERLLHMLQRRGGRLPIGDKSSPEEIMQHTGMSKKTFKMAVGMLYRRRLIRITPTAITLNETVSTPEA","1816852 1817712","TIGR ID: PG1727","conserved hypothetical protein","Cytoplasm","Residues 8-278 have 39% similarity to AE004229, V. cholerae conserved hypothetical protein.Residues 8-278 have 40% simialrity to AE004542, P. aeruginosa hypothetical protein.Residues ","
InterPro
IPR003029
Domain
RNA binding S1
SM00316\"[7-68]T\"[147-209]TS1
InterPro
IPR014464
Family
Predicted nucleic acid binding protein, YitL type
PIRSF012524\"[5-282]TYitL_S1
noIPR
unintegrated
unintegrated
SSF50249\"[144-211]TNucleic_acid_OB


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 14-265 are 27% similar to a (YITL PROTEIN) protein domain (PD128620) which is seen in O06747_BACSU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Mar 1 14:06:14 MST 2001","Thu Mar 1 14:06:14 MST 2001","Thu Mar 1 14:06:14 MST 2001","","Thu Mar 1 14:06:14 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 14:06:14 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Mar 1 14:06:14 MST 2001","34541356","","","","","","1","","","PG1727" "PG1506","1817787","1818236","450","ATGATGCGCGAAGCGATCCGATTGGCCGACGAAAGCGTTGCCAATGGAGGGGGGCCTTTTGGTGCTGTGATAGTAAAAGATGGAGAGATCATTGCAGCGACGAGCAATCGTGTGACCCTCGACAATGACCCCACAGCGCATGCAGAAGTGAATTGTATTCGTATGGCTTGTAAGCGGCTCGGCACTTTCGATCTTTCGGGATGTACCATTTATACTTCATGCGAGCCGTGTCCGATGTGCCTCGGAGCCATCTATTGGGCACGCATAGATCGGATTTTCTATGGCAACAATCGGCAGGATGCTGCCGATATAGGATTCGATGACGATTTTATCTATCAAGAGCTGGCTCGTCCTATGGATAACCGCTCTACTCCGATCATCCCGATACTGCAGGATGAAGCACTCCATTCTTTTCGTCTTTGGACAGAAAAAACGGATAAGACCAAATAC","4.70","-5.81","16757","MMREAIRLADESVANGGGPFGAVIVKDGEIIAATSNRVTLDNDPTAHAEVNCIRMACKRLGTFDLSGCTIYTSCEPCPMCLGAIYWARIDRIFYGNNRQDAADIGFDDDFIYQELARPMDNRSTPIIPILQDEALHSFRLWTEKTDKTKY","1817742 1818236","TIGR ID: PG1728","conserved hypothetical protein (possible deaminase)","Cytoplasm","Residues 2-150 have 54% simialrity to AJ002571, B. subtilis YkoA.Residues 2-150 have 51% similarity to AL451182, S. coelicolor putative deaminase. Residues 2-150 have 48% similarity to D64001, Synechocystis sp. hypothetical protein.","
InterPro
IPR002125
Domain
CMP/dCMP deaminase, zinc-binding
PF00383\"[1-96]TdCMP_cyt_deam_1
noIPR
unintegrated
unintegrated
G3DSA:3.40.140.10\"[1-147]TG3DSA:3.40.140.10
PTHR11079\"[2-134]TPTHR11079
PTHR11079:SF9\"[2-134]TPTHR11079:SF9
SSF53927\"[2-150]TSSF53927


","BeTs to 8 clades of COG0590COG name: Cytosine deaminase-related enzymesFunctional Class: FThe phylogenetic pattern of COG0590 is ----Yq-CeBRh------inxNumber of proteins in this genome belonging to this COG is 2","***** IPB002125 (Cytidine and deoxycytidylate deaminase zinc-binding region) with a combined E-value of 1.9e-10. IPB002125A 47-53 IPB002125B 71-80","Residues 42-126 are 35% similar to a (HYPOTHETICAL 15.9 KD PROTEIN) protein domain (PD175682) which is seen in O53839_MYCTU.Residues 2-46 are 63% similar to a (PROTEIN HYDROLASE ZINC &) protein domain (PD085102) which is seen in O34598_BACSU.Residues 47-94 are 68% similar to a (PROTEIN DEAMINASE HYDROLASE ZINC BIOSYNTHESIS) protein domain (PD001793) which is seen in O34598_BACSU.","","Thu Jun 14 12:10:12 MDT 2001","","Thu Jun 14 12:10:12 MDT 2001","Thu Jun 14 12:10:12 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:10:12 MDT 2001","Thu Jun 14 12:10:12 MDT 2001","","","Fri Mar 9 14:32:59 MST 2001","Tue Jun 26 10:52:49 MDT 2001","Thu Mar 1 14:13:41 MST 2001","Tue Jun 26 10:52:49 MDT 2001","Tue Jun 26 10:52:49 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 2-95 have 476% similarity to PG0666 cytosine deaminase.","Tue Jun 26 10:52:49 MDT 2001","Thu Mar 1 14:13:41 MST 2001","-59% similar to PDB:1TIY X-RAY STRUCTURE OF GUANINE DEAMINASE FROM BACILLUS SUBTILIS NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET SR160 (E_value = 3.3E_36);-59% similar to PDB:1WKQ Crystal Structure of Bacillus subtilis Guanine Deaminase. The first domain-swapped structure in the cytidine deaminase superfamily (E_value = 3.3E_36);-66% similar to PDB:2A8N Biochemical and Structural Studies of A-to-I Editing by tRNA:A34 Deaminases at the Wobble Position of Transfer RNA (E_value = 1.2E_17);-63% similar to PDB:1WWR Crystal structure of tRNA adenosine deaminase TadA from Aquifex aeolicus (E_value = 2.0E_17);-56% similar to PDB:2B3J Crystal Structure of Staphylococcus aureus tRNA Adenosine Deaminase, TadA, in Complex with RNA (E_value = 1.7E_16);","","","Residues 1 to 96 (E-value = 7.8e-32) place PG1506 in the dCMP_cyt_deam family which is described as Cytidine and deoxycytidylate deaminase zinc-binding region (PF00383)","Tue Jun 26 10:52:49 MDT 2001","34541357","","","","","","1","","","PG1728" "PG1507","1818974","1818438","537","ATGAGTCTAAAAATATTTCTAACAGCATTATCAGTTATGGCAACAGTAACATTACAAGGCAAAATCAACATCAATACTAATGGACAGCTCCCGGGTGTAGGTTCAGTTGCTCCCGACTTCAAAGCCGTGAGGGCTGATTTGAGCGAAGTATCGCTCTCGGAATTCAAAGGAAAAAGAGTGGTAATCAACATATTTCCCAGTATAGATACAGGTGTCTGTGCAGCCAGCGTACGCCGTTTCAATCAGGAAGCATCTTCTTTGGACAATACGGTAGTACTCTGCCTTTCCAAGGACCTGCCTTTTGCACAGGCTCGCTTCTGTGGTGCCGAAGGTCTGGACAAGGTTATCACCGTTTCAGCTTTCCGCTGCGACTGCTTTGAGAAGGGTTATGGTCTGCTGATGACCGATGGCCCTTTGAAAGGTCTCTTGGCTCGTGCCGTCGTTGTAGTGGACGAAAACGGTAAGATCATTTACGAAGAGCTTGTTCCCGAGATCACTCAAGAGCCGAATTATGAAGCTGCTATCGCTGCACTGAAG","5.10","-2.24","19173","MSLKIFLTALSVMATVTLQGKININTNGQLPGVGSVAPDFKAVRADLSEVSLSEFKGKRVVINIFPSIDTGVCAASVRRFNQEASSLDNTVVLCLSKDLPFAQARFCGAEGLDKVITVSAFRCDCFEKGYGLLMTDGPLKGLLARAVVVVDENGKIIYEELVPEITQEPNYEAAIAALK","1818974 1818438","TIGR ID: PG1729","thiol peroxidase","Cytoplasm, Periplasm","Residues 15-179 have 60% similarity to D90771, E. coli thiol peroxidase protein.Residues 13-178 have 58% similarity to AE006121, P. multocida Tpx.Residues 13-178 have 58% similarity to AE004681, P. aeruginosa thiol peroxidase. ","
InterPro
IPR002065
Family
Antioxidant Tpx
PTHR10681:SF3\"[28-179]TTPX
PS01265\"[96-107]TTPX
InterPro
IPR012335
Domain
Thioredoxin fold
G3DSA:3.40.30.10\"[14-179]TThioredoxin_fold
InterPro
IPR012336
Domain
Thioredoxin-like fold
SSF52833\"[16-179]TIPR012336
InterPro
IPR013740
Domain
Redoxin
PF08534\"[32-178]TRedoxin
noIPR
unintegrated
unintegrated
PTHR10681\"[28-179]TPTHR10681


","BeTs to 5 clades of COG2077COG name: Thiol peroxidaseFunctional Class: OThe phylogenetic pattern of COG2077 is -----q--ebrhuj-------Number of proteins in this genome belonging to this COG is 1","***** IPB002065 (Tpx family) with a combined E-value of 6.3e-61. IPB002065A 17-46 IPB002065B 76-126 IPB002065C 142-175***** PF00578 (AhpC/TSA family) with a combined E-value of 4.7e-09. PF00578A 57-76 PF00578B 96-106 PF00578C 136-147","Residues 107-179 are 63% similar to a (PEROXIDASE THIOL OXIDOREDUCTASE PROBABLE) protein domain (PD006582) which is seen in TPX_ECOLI.Residues 34-105 are 69% similar to a (PROTEIN PEROXIDASE ANTIOXIDANT REDUCTASE) protein domain (PD000498) which is seen in TPX_ECOLI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Mar 1 14:24:06 MST 2001","Thu Mar 1 14:24:06 MST 2001","Thu Mar 1 14:24:06 MST 2001","Thu Mar 1 14:24:06 MST 2001","Thu Mar 1 14:24:06 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 14:24:06 MST 2001","-75% similar to PDB:1QXH Crystal Structure of Escherichia coli Thiol Peroxidase in the Oxidized State (E_value = 5.9E_52);-73% similar to PDB:1XVQ Crystal structure of thiol peroxidase from Mycobacterium tuberculosis (E_value = 4.0E_48);-71% similar to PDB:1Q98 Structure of a Thiol Peroxidase from Haemophilus influenzae Rd (E_value = 3.7E_46);-73% similar to PDB:1Y25 structure of mycobacterial thiol peroxidase Tpx (E_value = 4.9E_46);-65% similar to PDB:1PSQ Structure of a probable thiol peroxidase from Streptococcus pneumoniae (E_value = 1.7E_35);","","","Residues 33 to 175 (E-value = 2.5e-36) place PG1507 in the AhpC-TSA family which is described as AhpC/TSA family (PF00578)","Tue May 15 15:35:20 MDT 2001","34541358","","","","","","1","","","PG1729" "PG1508","1819670","1819023","648","ATGCGAACGCTAAGGAGTATGACCATCGACGAATATATTGCGACACACACATCGGCCGAACCACCCCTCTTGCAAAAGTTGGATCGGGATGCTCATCTGCACCTGATGCGTCCGCGGATGCTCTCCGGACACCTGCAGGGACGTTTTTTGTCGATGATCTCTCATCTGATGAGGCCACGCCGGATCTTGGAGATCGGCACCTATACCGGCTATGCCTCTCTCTGCTTGGCAGAGGGATTGACTCCGGACGGACTGCTCCACACACTGGAGCGCGACGACGAGATGGAGGACTTCATCCGCCGCTATCTGGAGGCATCGGATTTTGGGGGTAAGATCAGATTACATATTGGGGAGGCCTTGGATCTACTACCGGACTTGGTCAAGAACGAACGCTTCGATCTGATTTATATGGATGCAGACAAGAGACAATACACCCTTTACTATGAAATGATCATAGACCACCTGCCTCCCGGAGCACTCATCCTGGCCGATAATACGCTTTGGGACGGTAAAGTGGTGGCCGAGCCTCTTCCGACCGATAGCCAGACACAGGGTATCCTTCGCTTCAACGAAATGGTCTTGCTGGATGAACGTGTGGAGAACTTGATAGTTCCGATGCGCGACGGGTTGAGCATGATTCGTGTACGA","5.40","-7.11","24932","MRTLRSMTIDEYIATHTSAEPPLLQKLDRDAHLHLMRPRMLSGHLQGRFLSMISHLMRPRRILEIGTYTGYASLCLAEGLTPDGLLHTLERDDEMEDFIRRYLEASDFGGKIRLHIGEALDLLPDLVKNERFDLIYMDADKRQYTLYYEMIIDHLPPGALILADNTLWDGKVVAEPLPTDSQTQGILRFNEMVLLDERVENLIVPMRDGLSMIRVR","1819670 1819023","TIGR ID: PG1730","O-methyltransferase","Cytoplasm","Residues 9-214 have 37% similarity to AE000743, A. aeolicus O-methyltransferase .Residues 6-216 have 33% similarity to U24657, M. xanthus putative O-methyltransferase.Residues 17-212 have 34% similarity to D64004,Synechocystis sp. O-methyltransferase.","
InterPro
IPR002935
Family
O-methyltransferase, family 3
PTHR10509\"[1-216]TMethyltransf_3
PF01596\"[15-216]TMethyltransf_3
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.150\"[1-213]TG3DSA:3.40.50.150
PIRSF005841\"[6-215]TCaff-CoA_3-mtase
SSF53335\"[4-215]TSSF53335


","BeTs to 8 clades of COG0500COG name: SAM-dependent methyltransferasesFunctional Class: RThe phylogenetic pattern of COG0500 is AMTKYQVCEBRHUJgPOLINXNumber of proteins in this genome belonging to this COG is 7","***** PF01596 (O-methyltransferase) with a combined E-value of 1.1e-29. PF01596A 40-87 PF01596B 130-148 PF01596C 182-215","Residues 80-161 are 36% similar to a (TRANSFERASE METHYLTRANSFERASE) protein domain (PD002981) which is seen in O67476_AQUAE.Residues 43-170 are 29% similar to a (O-METHYLTRANSFERASE TRANSFERASE METHYLTRANSFERASE) protein domain (PD016907) which is seen in COMT_MOUSE.Residues 86-212 are 24% similar to a (YRRM PROTEIN) protein domain (PD085608) which is seen in O32036_BACSU.Residues 11-209 are 26% similar to a (SIMILARITY TO COA METHYLTRANSFERASES) protein domain (PD137919) which is seen in Q20710_CAEEL.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Mar 1 14:31:46 MST 2001","Thu Mar 1 14:31:46 MST 2001","Thu Mar 1 14:31:46 MST 2001","Thu Mar 1 14:31:46 MST 2001","Thu Mar 1 14:31:46 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 14:31:46 MST 2001","-57% similar to PDB:1SUI Alfalfa caffeoyl coenzyme A 3-O-methyltransferase (E_value = 4.0E_22);-57% similar to PDB:1SUS Crystal structure of alfalfa feruoyl coenzyme A 3-O-methyltransferase (E_value = 4.0E_22);-52% similar to PDB:2AVD Crystal Structure of Human Catechol-O-methyltransferase domain containing 1 (E_value = 2.4E_19);-52% similar to PDB:2GPY Crystal structure of putative O-methyltransferase from Bacillus halodurans (E_value = 1.2E_18);","","","Residues 15 to 216 (E-value = 6.9e-40) place PG1508 in the Methyltransf_3 family which is described as O-methyltransferase (PF01596)","Tue May 15 17:47:19 MDT 2001","34541359","","","Pospiech,A., Bietenhader,J. and Schupp,T., Two multifunctional peptide synthetases and an O-methyltransferase are involved in the biosynthesis of the DNA-binding antibiotic and antitumour agent saframycin Mx1 from Myxococcus xanthus, Microbiology 142 (Pt 4), 741-746 (1996), PubMed: 8936303.","","Tue May 15 17:47:19 MDT 2001","1","","","PG1730" "PG1509","1820196","1819774","423","ATGAAGCTTATACACATTATCAATGGCCCCAATCTGGCGTCTCTGGGCAAGCGAGAACCGGAAATCTACGGCACTCGTTCGTTCGATGCTTATCTCGAAGATTTGCGAGACCTTTATCCCGATGCTACCATCTCTTACTATCAGAGCAACCATGAGGGCGAGCTGATCGATGCCCTTTACCGCGCCGAACAAAGCGGTGCCGTGGGAGTAGTGCTCAATGCCGGTGGTTATACGCACACGTCCATTGCCTTGCTGGATGCCATCCGAGCCATCAGCATCCCTGTAGTGGAGGTACATATCAGCTCCATCTTTGCACGCGAGGAATACCGCCGGCAGTCGATGATCGCGCCGGCTTGTCGGGGAGTCATATCAGGTTTCGGTCTGGAGGGTTACCGGTTGGCAGTAAATTTTCTGGTCAGAGAA","5.70","-3.09","15601","MKLIHIINGPNLASLGKREPEIYGTRSFDAYLEDLRDLYPDATISYYQSNHEGELIDALYRAEQSGAVGVVLNAGGYTHTSIALLDAIRAISIPVVEVHISSIFAREEYRRQSMIAPACRGVISGFGLEGYRLAVNFLVRE","1820196 1819774","TIGR ID: PG1731","3-dehydroquinate dehydratase","Cytoplasm","Residues 6-141 have 48% similarity to B69960, B. subtilis 3-dehydroquinate dehydratase homolog yqhS.Residues 4-144 have 51% similarity to AF124518, C. glutamicum 3-dehydroquinase; 3-dehydroquinate dehydratase.Residues 3-138 have 47% similarity to AE001933, D. radiodurans 3-dehydroquinate dehydratase. ","
InterPro
IPR001874
Family
Dehydroquinase, class II
PD004527\"[4-139]TDHquinase_II
G3DSA:3.40.50.9100\"[2-140]TDHquinase_II
PTHR21272\"[2-140]TDHquinase_II
PF01220\"[2-141]TDHquinase_II
PS01029\"[7-24]TDEHYDROQUINASE_II
SSF52304\"[2-141]TDHquinase_II


","BeTs to 6 clades of COG0757COG name: 3-dehydroquinate dehydratase IIFunctional Class: EThe phylogenetic pattern of COG0757 is ------vc-brhuj-------Number of proteins in this genome belonging to this COG is 1","***** IPB001874 (Dehydroquinase class II) with a combined E-value of 5.3e-45. IPB001874A 4-32 IPB001874B 40-60 IPB001874C 85-135","Residues 10-109 are 50% similar to a (DEHYDRATASE 3-DEHYDROQUINATE) protein domain (PD004527) which is seen in O52377_BBBBB.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Mar 1 14:41:56 MST 2001","Thu Mar 1 14:41:56 MST 2001","Thu Mar 1 14:41:56 MST 2001","Thu Mar 1 14:41:56 MST 2001","Thu Mar 1 14:41:56 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 14:41:56 MST 2001","-71% similar to PDB:1GQO TYPE II DEHYDROQUINASE FROM BACILLUS SUBTILIS (E_value = 1.1E_32);-67% similar to PDB:1H05 3-DEHYDROQUINATE DEHYDRATASE FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH SULPHATE (E_value = 4.9E_28);-67% similar to PDB:1H0R TYPE II DEHYDROQUINASE FROM MYCOBACTERIUM TUBERCULOSIS COMPLEXED WITH 2,3-ANHYDRO-QUINIC ACID (E_value = 4.9E_28);-67% similar to PDB:1H0S 3-DEHYDROQUINATE DEHYDRATASE FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH 3-HYDROXYIMINO-QUINIC ACID (E_value = 4.9E_28);-67% similar to PDB:2DHQ 3-DEHYDROQUINATE DEHYDRATASE FROM MYCOBACTERIUM TUBERCULOSIS (E_value = 4.9E_28);","","","Residues 4 to 141 (E-value = 6.1e-56) place PG1509 in the DHquinase_II family which is described as Dehydroquinase class II (PF01220)","Tue May 15 16:49:44 MDT 2001","34541360","","","","","","1","","","PG1731" "PG1510","1820314","1821237","924","ATGATAGAAGATAGCCTTTCCAAGCGTTACAAGTCCTACCTCAGTTTGGAGCTTCACCTGACGCCCAACAGTGTGGATGCTTACTTAAAGGATTTGAGCAAGTTAGACTCTTATCTCACGGCTGAAAACATCTCTTTTCGAGAGGTTTCGTATGAAAATCTTCAACATTTCGTAGCCGAATTGTATGACCTCGGCATCAGTGCGCGCTCGATAGCGCGTATCATCAGCGGTGTCAAGAGTTTCTTCCGCTTCCTCGTTTTGGAAGAGTATATCGAAGCGGATCCTACCGAGTTGCTCGAAGGCCCTCGCATCGGTGTCCATCTGCCTACGGTATTGACCATCGAAGAAGTTGATCGACTGATCGGATCGATCGATCCGGCAGCTCAGGGAGCCCAACGCAATCGCGCCATTCTGGAAATACTCTATAGCTGTGGTCTGCGTGTCAGCGAACTGACTTCTTTGAAATTCAGCAATCTCTTCCTCAACGAATCATTTTTGCGTATCGATGGCAAAGGGCGCAAACAGCGTCTTGTACCCATGAGCGAGACTGCTATCACCGAGCTGAAGCGGTATCTGTCCGATCCCGAACGCCCGACCCCTGTTCTTGGACAAGAGGAGTATGTGTTTCTGAGCAATCGCGGCAAAGCCATCTCCCGCATCATGGTTTTCGTCATGATCAAGAAGCTGGCAGAAGAAGCCGGTATAACGAAGAGTATCAGCCCCCATACATTCCGTCACAGCTTTGCCACCCATCTGCTCGAGGGAGGAGCTAATCTGCAGGCCATTCAGCTCATGCTTGGCCATGAGAACATTGCCACGACGGAGATCTATACCCATATCGACAGAGAAACACTCCGGCATGAAATCGAGACCTACCATCCGCGCAATCAATCCTATCGTCGATCCGGTTCCGAAGCTGACCAA","6.40","-3.61","35035","MIEDSLSKRYKSYLSLELHLTPNSVDAYLKDLSKLDSYLTAENISFREVSYENLQHFVAELYDLGISARSIARIISGVKSFFRFLVLEEYIEADPTELLEGPRIGVHLPTVLTIEEVDRLIGSIDPAAQGAQRNRAILEILYSCGLRVSELTSLKFSNLFLNESFLRIDGKGRKQRLVPMSETAITELKRYLSDPERPTPVLGQEEYVFLSNRGKAISRIMVFVMIKKLAEEAGITKSISPHTFRHSFATHLLEGGANLQAIQLMLGHENIATTEIYTHIDRETLRHEIETYHPRNQSYRRSGSEADQ","1820308 1821237","In E.coli, this protein is involved in site-specific (Xer) recombination, apparently catalyzing the cutting and rejoining of molecules. XerC and XerD proteins act together in this role.TIGR ID: PG1732","integrase/recombinase (XerD-related)","Cytoplasm","Numerous hits using gapped BLAST to integrase/recombinase proteins from, e.g., Staphylococcus aureus (gi: 3747042 and 6648971), B. subtilis (gi: 1710383), E. coli (gi: 139819), among others.This sequence is similar to BT2843. ","
InterPro
IPR002104
Domain
Integrase, catalytic core, phage
PF00589\"[121-287]TPhage_integrase
InterPro
IPR004107
Domain
Integrase, N-terminal SAM-like, phage
PF02899\"[7-89]TPhage_integr_N
InterPro
IPR010998
Domain
Integrase, Lamba-type, N-terminal
SSF47823\"[3-113]TL_intgrse_like_N
InterPro
IPR011010
Domain
DNA breaking-rejoining enzyme, catalytic core
SSF56349\"[105-294]TDNA_brk_join_enz
InterPro
IPR011932
Family
Tyrosine recombinase XerD
TIGR02225\"[8-296]Trecomb_XerD
InterPro
IPR013762
Domain
Integrase-like, catalytic core, phage
G3DSA:1.10.443.10\"[111-290]TPhage_intgr_like
noIPR
unintegrated
unintegrated
G3DSA:1.10.150.130\"[2-99]TG3DSA:1.10.150.130


","BeTs to 14 clades of COG0582COG name: IntegraseFunctional Class: LThe phylogenetic pattern of COG0582 is aMtK-qvcEBRHUJ---LINXNumber of proteins in this genome belonging to this COG is 8","***** PF00589 (\"Phage\" integrase family) with a combined E-value of 1.4e-14. PF00589A 144-151 PF00589B 241-250 PF00589C 266-277","Residues 208-286 are 56% similar to a (INTEGRASE DNA PROTEIN RECOMBINATION INTEGRATION PLASMID) protein domain (PD000437) which is seen in RIPX_BACSU.Residues 88-188 are 41% similar to a (PROTEIN INTEGRASE/RECOMBINASE DNA RECOMBINATION) protein domain (PD000548) which is seen in O87666_STAAU.Residues 133-294 are 27% similar to a (UNIQUE ORF MITOCHONDRION) protein domain (PD129407) which is seen in Q35688_PROWI.","","Thu Jun 14 12:10:27 MDT 2001","","Thu Jun 14 12:10:27 MDT 2001","Thu Jun 14 12:10:27 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:10:27 MDT 2001","Thu Jun 14 12:10:27 MDT 2001","","Tue Jun 26 10:49:51 MDT 2001","Thu Mar 30 17:23:55 MST 2000","Fri Dec 19 10:27:08 2003","Thu Apr 19 16:51:26 MDT 2001","Fri Dec 19 10:27:08 2003","Tue Jun 26 10:49:51 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 8-295 of PG1510 are 31% similar to PG0352, a conserved hypothetical protein (possible recombinase).Weaker similarity is shown to (in order of increasing E-value) PG0994, a transposase, PG0784, an integrase-recombinase protein, and also to PG1272, PG0735, PG1271, and PG0736, which are all integrases. ","Tue Jun 26 10:49:51 MDT 2001","Thu Apr 19 16:51:26 MDT 2001","-60% similar to PDB:1A0P SITE-SPECIFIC RECOMBINASE, XERD (E_value = 7.6E_42);-51% similar to PDB:2A3V Structural basis for broad DNA-specificity in integron recombination (E_value = 3.7E_20);","","","Residues 7 to 90 (E-value = 2.7e-15) place PG1510 in the Phage_integr_N family which is described as Phage integrase, N-terminal SAM-like domain (PF02899)Residues 112 to 287 (E-value = 1.7e-47) place PG1510 in the Phage_integrase family which is described as Phage integrase family (PF00589)","Fri Dec 19 10:27:08 2003","34541361","","","Blakely,G., May,G., McCulloch,R., Arciszewska,L.K., Burke,M., Lovett,S.T. and Sherratt,D.J.1993. Two related recombinases are required for site-specific recombination at dif and cer in E. coli K12. Cell 75(2): 351-361. PubMed: 8402918.Subramanya,H.S., Arciszewska,L.K., Baker,R.A., Bird,L.E., Sherratt,D.J. and Wigley,D.B. 1997. Crystal structure of the site-specific recombinase, XerD. EMBO J. 16(17): 5178-5187. PubMed: 9311978.Tichat,N. and Szatmari,G.B. Cloning and characterization of the Staphylococcus aureus xerD gene. Unpublished.","","Mon Apr 10 14:54:49 MDT 2000","1","","","PG1732" "PG1511","1821716","1821282","435","ATGAAACTAACAGACCGATGGTTTACTTCCATCAGTGAGGATGAGAAGGGCAACATAGTATTCGTCAATGGACGCTTGGAGCTTGACGAATTCCGACTGAGTGGCAAGCTGAAAATCCGAATCGAAATACGCTGGCCCTACGAAGCCGACGAACAAGGTCTGCCTACAGAATCGGCAGGCAAACGGATCGAAGAGATCGAGCTGCTCATCCGTAAGGCTATGGAAAAGGACAAGTTGGCCATCATGACAGGCAACTATACCGGAGGCGGAACAAAGTATTGGGTCTATTATGCCCGTACTGAACGAGTATTCGGCGAACGGCTCAATGAGGTGTTGGCCCCTTACGAAACATTACCGCTGGAGATAGAATGCGAAGTCGATACCGACTGGGAAGAGTACCTCGATATGCTCTCCATGAAAGACGAAAATTCGATA","4.40","-11.03","17010","MKLTDRWFTSISEDEKGNIVFVNGRLELDEFRLSGKLKIRIEIRWPYEADEQGLPTESAGKRIEEIELLIRKAMEKDKLAIMTGNYTGGGTKYWVYYARTERVFGERLNEVLAPYETLPLEIECEVDTDWEEYLDMLSMKDENSI","1821716 1821282","TIGR ID: PG1733","hypothetical protein","Cytoplasm","No hit found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541362","","","","","","1","","","PG1733" "PG1512","1822654","1821716","939","ATGGTTAGCCCGAAAAAAGAATCAAAATCGATGAAGATCCTCAAAAATCTGGCACTACCCATTGCCATGGCTTTGGGGGTATTGGCATGGCCTATACTGTCGCCGCTTTCTTTTCTGATACCCTACATGATCTTTCTGATGCTCTTCTTTACCTTCTTAAAGATCTCTCCTCGGGATATGCACTTCTCCCGACTGCATCTGCTGTTAGCCCTTATACAGATTACACTCGCTATAGGAGGATTTTTCGCTTTTAGGTTGCTCGATCCCATCGTGGCAGAAGGCGTTATGATCTGCTTTATCTGTCCTGCTGCCACGGCCTCATCCGTCATCATCGGAATGCTCGGAGGCAATATCGCCTTCGGTGCTACGTATGTGCTGCTTACCCACATGGGAGTAGCGGTATTGGGGCCTTTGCTGTTTTCTTCGCTGAGTACGGCACATGCCGATATGCCGTTTTGGTCTTCCGTCATCCATATTCTTTGGGGTGTCTTGCCTCTGGTGGTGGTTCCTCTATTGGCTGCTTGGATCATTCGTTTCACGAGCCCTCGGACACATGCCCGGCTTCTGCGCATTCCCCAAATGGCTTTTTGGCTATGGGTTACCTCGCTGGCTATCATCATGGCCAAAACGACAGGCTATGTGATGGCACAAGGCTCCGACAGCATCCGTTTGGAGCTGCTGTTGGCGTTGGGTGGTCTGCTAAGCTGTTTGCTGCAGTTCGGGTTGGGCAAGTGGCTAAGCAAACGATATTTGAAAGAGAGCATTACGGCCGGTCAGGCTTTGGGACAGAAAAACACGTCGCTTGCCATTTGGATGTCGCTTACCTATTTGAATCCGATAGCTTCTATCGCACCTGCAAGCTATGTGGTATGGCAAAATTCGCTCAATTCCATCCAAATCTGGCTATACGATAAACGAAAGAATAAAACCGACAGACAA","10.90","16.28","34607","MVSPKKESKSMKILKNLALPIAMALGVLAWPILSPLSFLIPYMIFLMLFFTFLKISPRDMHFSRLHLLLALIQITLAIGGFFAFRLLDPIVAEGVMICFICPAATASSVIIGMLGGNIAFGATYVLLTHMGVAVLGPLLFSSLSTAHADMPFWSSVIHILWGVLPLVVVPLLAAWIIRFTSPRTHARLLRIPQMAFWLWVTSLAIIMAKTTGYVMAQGSDSIRLELLLALGGLLSCLLQFGLGKWLSKRYLKESITAGQALGQKNTSLAIWMSLTYLNPIASIAPASYVVWQNSLNSIQIWLYDKRKNKTDRQ","1822654 1821716","TIGR ID: PG1734","hypothetical protein","Inner membrane, Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR002657
Family
Bile acid:sodium symporter
PF01758\"[41-217]TSBF


","BeTs to 3 clades of COG0385COG name: Predicted Na+-dependent transporterFunctional Class: RThe phylogenetic pattern of COG0385 is ----yq-ceB-----------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Mar 1 14:45:24 MST 2001","","Thu Mar 1 14:45:24 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Mar 1 14:45:24 MST 2001","34541363","","","","","","1","","","PG1734" "PG1513","1823175","1822624","552","ATGGGAGGCAAAATAAACGCTGAGCATCCGCTCGCACCTTTCAGATACTGTCCGCGCTGCGGAAACGATGGTTTTGCGGAGAGAAACCCGAAAGCCAAATCGTGTCCGAAGTGCGGATTGATTTATTATGCCAATCCTTCTGCTGCGACGGCTTGTTTCATTACCGATAGCGCGGGCAGACTATTGGCCGTGCGCCGAGCCAAAGATCCGGCCAAAGGCACACTCGATTTGCCCGGCGGCTTTATGGACATGGACGAAACGGCAGAAGAGGGTATCATCAGAGAGATCCGTGAGGAGACAGGAATAGAAGTCGAAGCAGTATCTTATCTTTTCTCGCTTCCCAATATCTATCCCTACGGAGGGATGCGCGTCCATACGGCCGATTTGTTTTTTGCAGCTCAAGTTTCTGATTTTTCCTCAGCCATAGCAAGTGATGATGCAGCCGAATTGGTGATATTGGCTCCGGACGATATAACCCCTGAAGACTTCGGATTGGAATCCATACACCAGGCTGTGGGGCGATGGTTAGCCCGAAAAAAGAATCAAAATCGA","5.00","-5.51","20030","MGGKINAEHPLAPFRYCPRCGNDGFAERNPKAKSCPKCGLIYYANPSAATACFITDSAGRLLAVRRAKDPAKGTLDLPGGFMDMDETAEEGIIREIREETGIEVEAVSYLFSLPNIYPYGGMRVHTADLFFAAQVSDFSSAIASDDAAELVILAPDDITPEDFGLESIHQAVGRWLARKKNQNR","1823175 1822624","TIGR ID: PG1735","hypothetical protein","Cytoplasm","No significant hits found using gapped BLAST search of GenBank.","
InterPro
IPR000086
Domain
NUDIX hydrolase
PR00502\"[75-89]T\"[89-104]TNUDIXFAMILY
G3DSA:3.90.79.10\"[46-158]TNUDIX_hydrolase
PF00293\"[46-179]TNUDIX
PS00893\"[80-101]TNUDIX
InterPro
IPR015797
Domain
NUDIX
SSF55811\"[8-178]TNUDIX_hydrolase
noIPR
unintegrated
unintegrated
PTHR22769\"[51-177]TPTHR22769


","BeTs to 3 clades of COG1051COG name: ADP-ribose pyrophosphataseFunctional Class: FThe phylogenetic pattern of COG1051 is amtk-q-C--r----------Number of proteins in this genome belonging to this COG is 1","***** IPB000086 (MutT domain) with a combined E-value of 8.9e-12. IPB000086 78-102","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Mar 1 14:49:23 MST 2001","Thu Mar 1 14:49:23 MST 2001","Thu Mar 1 14:49:23 MST 2001","Thu Mar 1 14:49:23 MST 2001","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 14:49:23 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 46 to 174 (E-value = 9.4e-21) place PG1513 in the NUDIX family which is described as NUDIX domain (PF00293)","Thu Mar 1 14:49:23 MST 2001","34541364","","","","","","1","","","PG1735" "PG1514","1823495","1823163","333","TTGCTCCGGAACATTCAGCCCGATCTAATCACTTCGAAAGATGTTTACGATGCAGCTATCAGTGGCGATGGCCTTGCTCAAGAGATATTCGAGACTACGGGAGCCATCCTCGGAGAGGCTTTTGCCGACTTCGTTACCTTCTCCAGTCCGGAAGCGATCATCCTCTTCGGTGGTCTTACCAAAGCAGGTGACCTGCTGATGAATCCGATCCGCCACCACATGGAAAAGAATGTGCTGAATATCTACCGAGGGAAGACCAAGCTGCTCTTCTCTCAGCTCAAAGAGAGCGATGCCGCTGTGCTCGGGGCAAGTGCTTTGGGATGGGAGGCAAAA","4.90","-3.53","11964","LLRNIQPDLITSKDVYDAAISGDGLAQEIFETTGAILGEAFADFVTFSSPEAIILFGGLTKAGDLLMNPIRHHMEKNVLNIYRGKTKLLFSQLKESDAAVLGASALGWEAK","1823495 1823163","TIGR ID: PG1737","glucose kinase","Cytoplasm","Several weak hits to glucose kinase proteins in gapped BLAST; e.g.residues 10-106 have 35% similarity to AJ000005, B. megaterium glucose kinase, residues 7-106 have 31% similarity to AE001798, T. maritima glucokinase, residues 8-111 have 28% similarity to AE006432, Lactococcus lactis subsp. lactis glucose kinase. ","
noIPR
unintegrated
unintegrated
PTHR18964\"[1-108]TROK FAMILY
PTHR18964:SF37\"[1-108]TGLUCOSE KINASE


","BeTs to 5 clades of COG1940COG name: Transcriptional regulators of NagC/XylR familyFunctional Class: KThe phylogenetic pattern of COG1940 is a-t--qVcEBRH----O----Number of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","Residues 10-106 are 35% similar to a (PROTEIN KINASE REPRESSOR TRANSFERASE) protein domain (PD001669) which is seen in O31392_BACME.","","","","","","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","","","","Tue Jun 26 10:46:30 MDT 2001","Thu Mar 1 14:55:07 MST 2001","Tue Mar 20 16:45:15 MST 2001","Thu Mar 1 14:55:07 MST 2001","","Tue Jun 26 10:46:30 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 14:55:07 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Jun 26 10:46:30 MDT 2001","","","","Spath,C., Kraus,A. and Hillen,W. 1997. Contribution of glucose kinase to glucose repression of xylose utilization in Bacillus megaterium. J. Bacteriol. 179 (23): 7603-7605. PubMed: 9393732.","","Tue Mar 20 16:47:50 MST 2001","1","","","PG1737" "PG1515","1824146","1823580","567","GTGAAACATCTAAAAGACACTATTTCAATGGAAAAGCCTTATGTATTAGGAGTGGATGTAGGCGGTACCAACACCGTATTCGGAGTGGTGGACGCTCGTGGCAATTTGGTTATAAGTTCGTCCATCAAGACCGGAGCGCACAACGATCTGAACGATTATATCAAAGATCTGACTGCCGGCATCAATCAGTTGATTGAACAGGTAGGAGGGAAAGAGAAGATAAAGGGTATCGGTGTAGGTGCTCCCAATGGAAACTATTATACCGGATCGATCGAGTTTGCGCCCAATTTGCCTTGGAAACAGACCCAAATACCCTTCGCCCAAATGCTCACCGATTCATTAGGTATCCCCACGACACTGACCAATGATGCCAATGCTGCTGCCATCGGAGAGATGACCTATGGAGCAGCTCGTGGCATGAAGGACTTCATCGTTATCACGCTCGGTACGGGGGTCGGAAGCGGCATAGTAGTCAATGGCAGCTTGGTGTACGGACACGATGGATTTGCCGGTGAGCTGGGACACATGATCGTTCGCCGCAATGGTCGCATGTGCGGTTGTGGCAGA","7.50","0.86","19799","VKHLKDTISMEKPYVLGVDVGGTNTVFGVVDARGNLVISSSIKTGAHNDLNDYIKDLTAGINQLIEQVGGKEKIKGIGVGAPNGNYYTGSIEFAPNLPWKQTQIPFAQMLTDSLGIPTTLTNDANAAAIGEMTYGAARGMKDFIVITLGTGVGSGIVVNGSLVYGHDGFAGELGHMIVRRNGRMCGCGR","1824146 1823580 [Delay by 168 1958 122 0]","Hits from PG1514 and PG1515 to glucose kinase suggest error in orf prediction. NO TIGR ID corresponds to this gene.","glucose kinase","Cytoplasm, Extracellular","Residues 10-189 have 32% similarity to AP001512, B. halodurans glucose kinase.Residues 2-188 have 30% similarity to AB040071, S. griseus glucose kinase.Residues 9-188 have 48% similarity to AJ302503, S. pyogenes glucose kinase .","
InterPro
IPR000600
Family
ROK
PF00480\"[17-189]TROK
PS01125\"[148-175]TROK
noIPR
unintegrated
unintegrated
G3DSA:3.30.420.160\"[123-189]Tno description
PTHR18964\"[80-189]TROK FAMILY
PTHR18964:SF37\"[80-189]TGLUCOSE KINASE
tmhmm\"[143-163]?transmembrane_regions


","BeTs to 8 clades of COG1940COG name: Transcriptional regulators of NagC/XylR familyFunctional Class: KThe phylogenetic pattern of COG1940 is a-t--qVcEBRH----O----Number of proteins in this genome belonging to this COG is 2","***** IPB000600 (ROK family) with a combined E-value of 2.1e-23. IPB000600A 17-24 IPB000600B 117-131 IPB000600C 144-175","Residues 16-188 are 35% similar to a (PROTEIN KINASE REPRESSOR TRANSFERASE) protein domain (PD001669) which is seen in GLK_STRCO.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Tue May 15 16:55:06 MDT 2001","Thu Mar 1 15:09:12 MST 2001","Thu Mar 1 15:09:12 MST 2001","Thu Mar 1 15:09:12 MST 2001","Thu Mar 1 15:09:12 MST 2001","Thu Mar 1 15:09:12 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 15:09:12 MST 2001","-59% similar to PDB:1XC3 Structure of a Putative Fructokinase from Bacillus subtilis (E_value = 2.1E_13);-43% similar to PDB:2AA4 Crystal structure of Escherichia coli putative N-ACETYLMANNOSAMINE KINASE, New York Structural Genomics Consortium (E_value = 5.1E_12);-44% similar to PDB:1WOQ Crystal Structure of Inorganic Polyphosphate/ATP-Glucomannokinase From Arthrobacter sp. strain KM At 1.8 A Resolution (E_value = 1.9E_11);-46% similar to PDB:2HOE Crystal structure of N-acetylglucosamine kinase (TM1224) from Thermotoga maritima at 2.46 A resolution (E_value = 2.5E_11);-64% similar to PDB:1Z05 Crystal structure of the ROK family transcriptional regulator, homolog of E.coli MLC protein. (E_value = 2.1E_10);","","","Residues 17 to 189 (E-value = 6.6e-24) place PG1515 in the ROK family which is described as ROK family (PF00480)","Tue May 15 16:55:06 MDT 2001","","","","","","","1","","","" "PG1516","1825224","1824193","1032","ATGAAACGACAGCAGAAACAGCGGAGGAAAGCAGTGACGATCTCTGCCACCGTAGGGCAAGCCTATGCCAATCGGCTACTGATCCTCACAGAGGTGTTGGCTTTGCTTTACGTCATCATCACGGGGATCATCCTCCTTATTATGCGCCCCACCATGCCCGACGCCGACACACTGCTTCTCAATCGGGTGGAAATACTCGTAGGAACAGGCATATTCGCATTGCTCTATTATCGCTCTCCTTCTCGATTCACTTGGGCACTGCGCATCATCTTTCAGCTGATGCTGCTCAGCTATTGGTATCCGGAGACTTTTCTCTTCAATCAGCATTTCGACAATCTGGATCATATCTTCGCTCAGGCCGAACAGATCGTTTGCTTCAGTCAGCCGGCTATTTGGTTTAGCCGGTTATTCCCCCACTGGATAATAAGCGAAGTCCTCCACTTCGGCTACTTCATCTATTACGCACTTATCGTCGGAGTCATTCTTTTCTACTATATCTCCAATTACAGGCAGGCCGAACGTGTAGCTTTCGTGCTGTTCGGTTCTTTTTATATCTACTATCTGATCTATACTCTCCTGCCGGTAGCCGGGCCACAATTCTATTTCCCCGCCATCGGTTGGGATAGCGTAGCGGCAGGGCGATTTCCACCCATCGGTCAGTACTTTGCCGCACACCCGGAGCTACAAGAGATGGAGGTGGCGCATCAGGGACTGTTCTATCGTCTGGTCAATATGTCACAACAAATGGGAGAGCGTCCCACTGCGGCTTTTCCCAGTAGTCATGTCGGCATTACAACGGTGATCTTCGCTTTCTTTCACCGAAGTAGCCGGAAGTTATTCTGGTACCTCCTGCCCATCGGTATTTGCCTGACACTGGCGACTGTCTATATACAAGCACATTATTTCATCGATGTATTGGCCGGTCTGGTTTCGGGACTCTTATTCTATTATGGAGGGAACAAACTGTATTCGTGGCTGGACATCGTCATCAGTGGCCGGAGGAGCAAACTGCAAAGCATACCAGCCGGCCGG","10.30","11.06","39744","MKRQQKQRRKAVTISATVGQAYANRLLILTEVLALLYVIITGIILLIMRPTMPDADTLLLNRVEILVGTGIFALLYYRSPSRFTWALRIIFQLMLLSYWYPETFLFNQHFDNLDHIFAQAEQIVCFSQPAIWFSRLFPHWIISEVLHFGYFIYYALIVGVILFYYISNYRQAERVAFVLFGSFYIYYLIYTLLPVAGPQFYFPAIGWDSVAAGRFPPIGQYFAAHPELQEMEVAHQGLFYRLVNMSQQMGERPTAAFPSSHVGITTVIFAFFHRSSRKLFWYLLPIGICLTLATVYIQAHYFIDVLAGLVSGLLFYYGGNKLYSWLDIVISGRRSKLQSIPAGR","1825224 1824193","TIGR ID: PG1738","hypothetical protein","Inner membrane, Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR000326
Family
Phosphoesterase, PA-phosphatase related
PF01569\"[256-328]TPAP2
InterPro
IPR008934
Family
Acid phosphatase/vanadium-dependent haloperoxidase
SSF48317\"[83-325]TAcPase_VanPerase
noIPR
unintegrated
unintegrated
PTHR14969\"[257-314]TPTHR14969
PTHR14969:SF3\"[257-314]TPTHR14969:SF3


","BeTs to 5 clades of COG0671COG name: Predicted phosphatasesFunctional Class: RThe phylogenetic pattern of COG0671 is -mtkYq-cEBrhUJ---l--xNumber of proteins in this genome belonging to this COG is 3","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Mar 1 15:10:16 MST 2001","","Thu Mar 1 15:10:16 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 15:10:16 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Mar 1 15:10:16 MST 2001","34541365","","","","","","1","","","PG1738" "PG1517","1825802","1825224","579","ATGGAAAAGGTACATTATGCCGCCATAGACGTCGGCTCGAATGCTGTGCGCCTACTGATCAAATGTGTCAATAGCGAAGGAATGGAGGAGCCTCTCAGCAAGGTGCTGATCATGCGAGTTCCCATTCGTCTGGGCGAAGACTCTTTTACCAAAGGATACATAGGAGAGGAAAAGACAGACAACATGGTACGGCTCATGCGGGCATACTATGAGATGATGCAGATATATCGGGTAAAGGACTATCGCGCCTGTGCCACCTCCGCCATGAGAGATGCATCGAATGCCGAAGCCGTGATCGCACAGATCCGAGAGAAAACAGGTATCCATATAGACATCATTGATGGAGATGAGGAGGCACGCCTCGTTTCGGACAATCATATCGAACAGATTATTTCCGACGGAGGCAATTACATCTATCTGGACGTCGGTGGAGGTAGTACCGAGCTTACCATCCCGGCAGCAGAGATTTTCCTTGAGGTGGCGGACATTACCGGAGCCAAAACCATCATTGCTCCTATCGTAGGATTGGCAGATGGTATCATCGAAGACCTCTATATACGCCACCAGTCTCAACCCTCA","4.60","-11.12","21308","MEKVHYAAIDVGSNAVRLLIKCVNSEGMEEPLSKVLIMRVPIRLGEDSFTKGYIGEEKTDNMVRLMRAYYEMMQIYRVKDYRACATSAMRDASNAEAVIAQIREKTGIHIDIIDGDEEARLVSDNHIEQIISDGGNYIYLDVGGGSTELTIPAAEIFLEVADITGAKTIIAPIVGLADGIIEDLYIRHQSQPS","1825802 1825224","TIGR ID: PG1739","probable exopolyphosphatase","Cytoplasm","Residues 4-150 have 28% similarity to U00018, M. leprae ppx.Residues 1-150 have 27% similarity to AP001511, B. halodurans exopolyphosphatase.Residues 7-151 have 28% similarity to AE002496, N. meningitidis exopolyphosphatase.","
InterPro
IPR003695
Family
Ppx/GppA phosphatase
PF02541\"[66-149]TPpx-GppA
noIPR
unintegrated
unintegrated
G3DSA:3.30.420.40\"[6-130]TG3DSA:3.30.420.40
SSF53067\"[2-121]T\"[133-151]TSSF53067


","BeTs to 6 clades of COG0248COG name: ExopolyphosphataseFunctional Class: F,PThe phylogenetic pattern of COG0248 is ----yqvcE-Rhuj------xNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 4-150 are 28% similar to a (PROTEIN EXOPOLYPHOSPHATASE HYDROLASE) protein domain (PD006401) which is seen in Y496_MYCLE.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Fri Jun 15 11:26:23 MDT 2001","Fri Jun 15 11:26:23 MDT 2001","Thu Mar 1 15:15:08 MST 2001","","Thu Mar 1 15:15:08 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 15:15:08 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue May 15 16:59:04 MDT 2001","34541366","","","","","","1","","","PG1739" "PG1518","1827376","1825952","1425","ATGGAATTAAAAAAGACTACACGTATCGAAAGCGATCTTATCGGAGAACGCGAGATACCCGGCCATATTCTATATGGCGTACAGACGCTGCGTGGTATAGAAAACTTCCCCATCAGCAATTTTCATCTGAACGATTACCCCCTGTTTATCAATGGCTTGGCCATGACGAAATGGGCGGCTGCAGTGGCCAATCATCGGCTCGGTCTCTTGACCGATGCCCAGAAAGACGGCATCGTGAAAGCCTGCAAGGAAATCCTCGAAGGCAAGCACCACGAGCATTTCCCCGTGGATATGATCCAAGGCGGTGCAGGAACGACCACGAATATGAACGCCAACGAGGTGATTTGCAACCGTGCCTTGCAGATCATGGGACACGAGGCAGGCGAATTTGCCCACCTCTCCCCCAATGATCACGTGAACTGCTCGCAGAGCACCAACGATGCTTATCCGACAGCTATCCACCTCGGCCTTTACGCTACATATCTGAAGTTCCGCCCCCATCTTCTGGATCTCATCGAGTCGCTGCGTGCCAAGAGCCGCGAATTTGCCCATGTACTCAAGATGGGACGTACTCAGCTCGAAGATGCTGTGCCTATGTCTCTGGGACAGACGTTCGGCGGATTTGCTTCCATCTTGCAGGATGAAATCAAAAATCTGGACTTTGCCGCCGAAGAGTTCCTGACCGTGAATATGGGTGCTACGGCTATCGGCACGGGTATCTGCGCCCAGCCGAACTATGCCGAATACTGCATAGAGGCTCTTCGTGAAGTCACCGGCTGGGACATTCGTCTCAGTGCCGATCTGGTAGGGGCAACGAGCGACACTTCCGTGATGGTAGGATATTCGTCTGCCTTGCGCCGTATCTGTGTGAAGGTGAACAAGATTTGCAACGACCTGCGTCTCCTTGCCAGCGGTCCTCGTTGCGGTTTGCACGAATTCAATCTGCCTGCCATGCAGCCGGGTTCGTCCATCATGCCGGGTAAGGTGAATCCTGTGATTCCGGAAGTAATGAATCAGATCTGCTATAAGGTGATGGGCAACGACCTGACCGTAACGATGGCAGGCGATGCAGCCCAAATGGAGCTGAACGCTATGGAGCCTGTGATGGCACAATGCTGCTTCGAAAGTTCGGATCTGCTCATGAACGGATTCGATACGCTGCGTACACTCTGTATCGATGGCATCACGGCCAACGAGGACGAATGCCGTGGGTATATCCGCAACAGCATCGGTATCGTTACGGCTCTGAATCCGATCATCGGCTATAAGAATTCGACCAAGATCGCCAAGGAAGCGATGGAAACGGGACGTGGCGTTTACGACCTCGTTTTGGAACACGACATCCTGTCGAAAGAGGATCTGGATACGATACTCTCACCGGAGAATATGATCAAGCCGGTCAAGCTCGACATCAAACCGCGTCGC","5.50","-12.21","52195","MELKKTTRIESDLIGEREIPGHILYGVQTLRGIENFPISNFHLNDYPLFINGLAMTKWAAAVANHRLGLLTDAQKDGIVKACKEILEGKHHEHFPVDMIQGGAGTTTNMNANEVICNRALQIMGHEAGEFAHLSPNDHVNCSQSTNDAYPTAIHLGLYATYLKFRPHLLDLIESLRAKSREFAHVLKMGRTQLEDAVPMSLGQTFGGFASILQDEIKNLDFAAEEFLTVNMGATAIGTGICAQPNYAEYCIEALREVTGWDIRLSADLVGATSDTSVMVGYSSALRRICVKVNKICNDLRLLASGPRCGLHEFNLPAMQPGSSIMPGKVNPVIPEVMNQICYKVMGNDLTVTMAGDAAQMELNAMEPVMAQCCFESSDLLMNGFDTLRTLCIDGITANEDECRGYIRNSIGIVTALNPIIGYKNSTKIAKEAMETGRGVYDLVLEHDILSKEDLDTILSPENMIKPVKLDIKPRR","1827376 1825952","Aspartate ammonia-lyase (EC 4.3.1.1) (aspartase), which catalyzes the reversible conversion of aspartate to fumarate and ammonia. This reaction is analogous to that catalyzed by fumarase, except that ammonia rather than water is involved in the trans-elimination reaction.TIGR ID: PG1741","aspartate ammonia-lyase (aminotransferase)","Cytoplasm","Numerous significant hits to aspartate ammonia-lyase using gapped BLAST from, e.g., Campylobacter jejuni (gi: 6967581), Wolinella succinogenes (gi: 2644959), E. coli (gi: 114272), among others.This protein is similar to CT855, a predicted fumarate hydratase class II and to BT2755.","
InterPro
IPR000362
Domain
Fumarate lyase
PR00149\"[139-157]T\"[184-200]T\"[275-302]T\"[321-337]TFUMRATELYASE
PF00206\"[15-346]TLyase_1
PS00163\"[321-330]TFUMARATE_LYASES
InterPro
IPR008948
Domain
L-Aspartase-like
SSF48557\"[3-460]TL-Aspartase-like
noIPR
unintegrated
unintegrated
G3DSA:1.10.275.10\"[5-143]TG3DSA:1.10.275.10
G3DSA:1.10.40.30\"[412-466]TG3DSA:1.10.40.30
G3DSA:1.20.200.10\"[144-411]TG3DSA:1.20.200.10
PTHR11444\"[1-473]TPTHR11444
PTHR11444:SF1\"[1-473]TPTHR11444:SF1


","BeTs to 4 clades of COG1027COG name: Aspartate ammonia-lyaseFunctional Class: EThe phylogenetic pattern of COG1027 is ------v-eb-huj-------Number of proteins in this genome belonging to this COG is 1","***** IPB000362 (Fumarate lyase) with a combined E-value of 8.1e-12. IPB000362A 189-202 IPB000362B 321-331","Residues 188-465 are 56% similar to a (LYASE BIOSYNTHESIS ARGININOSUCCINATE FUMARATE HYDRATASE) protein domain (PD000660) which is seen in O34244_WOLSU.Residues 29-187 are 53% similar to a (LYASE FUMARATE HYDRATASE FUMARASE) protein domain (PD002097) which is seen in ASPA_PSEFL.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Fri Dec 19 10:02:42 2003","Thu Mar 30 17:07:42 MST 2000","Fri Dec 19 10:02:42 2003","Wed Dec 20 16:03:31 MST 2000","Wed Apr 18 15:59:02 MDT 2001","Wed Apr 18 15:59:02 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Wed Dec 20 16:27:29 MST 2000","Wed Apr 18 15:59:02 MDT 2001","-69% similar to PDB:1JSW NATIVE L-ASPARTATE AMMONIA LYASE (E_value = 9.1E_136);-66% similar to PDB:1J3U Crystal structure of aspartase from Bacillus sp. YM55-1 (E_value = 2.4E_120);-58% similar to PDB:1KQ7 E315Q Mutant Form of Fumarase C from E.coli (E_value = 2.4E_88);-58% similar to PDB:2FUS MUTATIONS OF FUMARASE THAT DISTINGUISH BETWEEN THE ACTIVE SITE AND A NEARBY DICARBOXYLIC ACID BINDING SITE (E_value = 3.2E_88);-58% similar to PDB:1FUO FUMARASE C WITH BOUND CITRATE (E_value = 5.4E_88);","","","Residues 15 to 346 (E-value = 1.7e-120) place PG1518 in the Lyase_1 family which is described as Lyase (PF00206)","Wed Apr 18 15:59:02 MDT 2001","34541367","","","Ullmann,R., Gross,R., Simon,J., Unden,G. and Kroger,A., Transport of C(4)-dicarboxylates in wolinella succinogenes, J. Bacteriol. 182 (20), 5757-5764 (2000) , PubMed: 11004174.Woods,S.A., Miles,J.S., Roberts,R.E. and Guest,J.R. 1986. Structural and functional relationships between fumarase and aspartase. Nucleotide sequences of the fumarase (fumC) and aspartase (aspA) genes of Escherichia coli K12. Biochem. J. 237(2): 547-557. PubMed: 3541901.Takagi,J.S., Tokushige,M. and Shimura,Y. 1986. Cloning and nucleotide sequence of the aspartase gene of Pseudomonas fluorescens. J. Biochem. 100(3): 697-705. PubMed: 3096982.Takagi,J.S., Ida,N., Tokushige,M., Sakamoto,H. and Shimura,Y. 1985. Cloning and nucleotide sequence of the aspartase gene of Escherichia coli W. Nucleic Acids Res. 13(6): 2063-2074. PubMed: 2987841.","","Wed Apr 18 15:59:02 MDT 2001","1","","","PG1741" "PG1520","1828441","1827626","816","ATGACCAACTCCAACTCCTTATACGAGAGACTACAGACAGCGGACTCATTCTTCCTGATGGCCGGCCCCTGTGCCATAGAGAGCGAAGATATGGCACTGCGCATTGCAGAGCGAATAGTAGAGGTGACTTCCCGACTGGGCATTCCGTATATATTCAAGGGATCGTACCGCAAGGCCAACCGCTCGCGTATAGATTCCTTCACCGGCATAGGCGACGAAAAGGCACTTCGCATTCTGGGCAAGGTAGGCCGGGAGTTCGGTGTCCCGACGGTGACGGACATACATGAGACACACGAAGCGGCTATGGCTGCCGAGTACGTGGATGTACTCCAGATACCGGCTTTCCTCTGCCGGCAGACGGATCTGATCGTGGCGGCAGCCTACACCGGGCGAATCGTCAATGTGAAGAAAGGGCAGTTCCTCTCGGGCGAAGCCATGGCTTTCGTGGCACGAAAGTGCGTGGACAGCGGCAACAGCCAAGTGATTCTGACCGAGCGTGGCAATACCTTCGGCTACACGGATTTGGTGGTGGACTACCGGAATATTCCGGCAATGCGTTCGCTGGGCTTTCCCGTAGTAATGGACGTGACTCACTCCCTCCAGCAACCCAATCAGGGTAGTGGCGTGACGGGGGGAAAACCCGAACTGATAGAGACCATCGCGAAGGCTGCCATAGCCGTAGGTGCGGACGGGCTTTTCATCGAAACGCATCCCGATCCTGCTTCGGCCAAAAGCGATGGAGCCAACATGCTCCGACTGGATTTGCTCGAAGGGCTGCTCACGAAGCTGATGCGCATACGGGCAGCGATCAGGGAT","6.50","-1.17","29559","MTNSNSLYERLQTADSFFLMAGPCAIESEDMALRIAERIVEVTSRLGIPYIFKGSYRKANRSRIDSFTGIGDEKALRILGKVGREFGVPTVTDIHETHEAAMAAEYVDVLQIPAFLCRQTDLIVAAAYTGRIVNVKKGQFLSGEAMAFVARKCVDSGNSQVILTERGNTFGYTDLVVDYRNIPAMRSLGFPVVMDVTHSLQQPNQGSGVTGGKPELIETIAKAAIAVGADGLFIETHPDPASAKSDGANMLRLDLLEGLLTKLMRIRAAIRD","1828483 1827626 [Shorter 1961 768 99]","TIGR ID: PG1743","2-dehydro-3-deoxyphosphooctonate aldolase (3-deoxy-D-manno-2-octulosonate-8-phosphate synthase) (KDO-8-phosphate synthetase) (KDO 8-P synthase)","Cytoplasm","Numerous significant hits to 2-dehydro-3-deoxyphosphooctonate aldolase (3-deoxy-D-manno-2-octulosonate-8-phosphate synthase) (KDO-8-phosphate synthetase) (KDO 8-P synthase) in gapped BLAST; e.g. residues 17-265 are 50% similar to pirF71714 2-dehydro-3-deoxyphosphooctonate aldolase of Rickettsia prowazekii, residues 1-266 are 49% similar to embCAA74644.1 3-deoxy-D-manno-2-octulosonate-8-phosphate synthase of Pisum sativum, residues 17-271 are 44% similar to gbAAD13217.1 2-dehydro-3-deoxyphosphooctonate aldolase of Pseudomonasaeruginosa.This sequence is similar to BT4321.","
InterPro
IPR006218
Domain
DAHP synthetase I/KDSA
PF00793\"[12-272]TDAHP_synth_1
InterPro
IPR006269
Family
3-deoxy-8-phosphooctulonate synthase
PTHR21057:SF2\"[14-272]TKDO8P_synthase
TIGR01362\"[15-272]TKDO8P_synth
InterPro
IPR013785
Domain
Aldolase-type TIM barrel
G3DSA:3.20.20.70\"[14-271]TAldolase_TIM
noIPR
unintegrated
unintegrated
PIRSF001364\"[1-272]TKdsA
PTHR21057\"[14-272]TPTHR21057
SSF51569\"[1-272]TSSF51569


","BeTs to 8 clades of COG0722COG name: DAHP synthase/3-Deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthaseFunctional Class: E,MThe phylogenetic pattern of COG0722 is ----YqvcEb-Huj----INxNumber of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","Residues 17-265 are 50% similar to a (ALDOLASE SYNTHETASE SYNTHASE) protein domain (PD005860) which is seen in Q9ZE84_RICPR.","","Thu Jun 14 12:11:33 MDT 2001","","Thu Jun 14 12:11:33 MDT 2001","Thu Jun 14 12:11:33 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:11:33 MDT 2001","Thu Jun 14 12:11:33 MDT 2001","","","Tue Mar 27 16:26:13 MST 2001","Wed Jul 23 19:52:47 2008","Tue Mar 27 16:26:13 MST 2001","","Tue Jun 26 10:26:47 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Jul 23 19:52:47 2008","-66% similar to PDB:1FWN AQUIFEX AEOLICUS KDO8P SYNTHASE IN COMPLEX WITH PEP (E_value = 2.5E_62);-66% similar to PDB:1FWS AQUIFEX AEOLICUS KDO8P SYNTHASE IN COMPLEX WITH PEP AND CADMIUM (E_value = 2.5E_62);-66% similar to PDB:1FWT AQUIFEX AEOLICUS KDO8P SYNTHASE IN COMPLEX WITH PEP, E4P AND CADMIUM (E_value = 2.5E_62);-66% similar to PDB:1FWW AQUIFEX AEOLICUS KDO8P SYNTHASE IN COMPLEX WITH PEP, A5P AND CADMIUM (E_value = 2.5E_62);-66% similar to PDB:1FX6 AQUIFEX AEOLICUS KDO8P SYNTHASE (E_value = 2.5E_62);","","","Residues 12 to 272 (E-value = 5.7e-88) place PG1520 in the DAHP_synth_1 family which is described as DAHP synthetase I family (PF00793)","Tue Jun 26 10:26:47 MDT 2001","34541369","","","","","","1","","","PG1743" "PG1520.1","1828858","1828502","357","TTGTTCATCGAACTAATAAAAAGAGCTTTTCGATCTGAAAAAGGCTGTCATGTTACGTACTTTACCTCGAATTTCGATCTCTCAGAAGTGCTTATTTGGAATCATTCCAAACACTTCTTCGTTGTTGAAAACTTTTTTGGCGCATATTTTTCGGTGAATATTCCGTTTTTTTCAGCTTCGAAAATGACCCATATCGAAAGATTTTGCTTTTACCTTATACTCATCAAAAAACGAAAGAGAACACAGGTTGCCGTTCTTCATTCATGCATAGCTATGACGGTCATTTTTTTACTTGTTCTGAGCACTTTTCCCTCTCGACTCTTGGCCGGCCGATCGACGGAATCGACTACTCTCTAT","","","13899","LFIELIKRAFRSEKGCHVTYFTSNFDLSEVLIWNHSKHFFVVENFFGAYFSVNIPFFSASKMTHIERFCFYLILIKKRKRTQVAVLHSCIAMTVIFLLVLSTFPSRLLAGRSTESTTLY","","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
noIPR
unintegrated
unintegrated
tmhmm\"[83-103]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG1520.2","1829365","1829069","297","TTGGTTCGTATTTTTGTTTGTACCCCTGATCGAGTGTCCGAATCGGACTCGTCGGGAAGGAGCTTTTTTGCTACTTTTGCAGAGTGGCAGAAAACCCTCATGAATGTATGTCCATATATTTGGAGAAAGCTAATTTATCAACGAAAATACTTTACTAACGACTCAATGAAAACAGATATGTACTCCGTTACTCTATTACACGTTTGGCCGCAGGTCTATTGTGTCCTGCCCGTATCAGCATATATGGTCGCAACATGCGGACAAAGCGGATTTTATTCTATGAGGAGTAAAGCCGTA","","","11518","LVRIFVCTPDRVSESDSSGRSFFATFAEWQKTLMNVCPYIWRKLIYQRKYFTNDSMKTDMYSVTLLHVWPQVYCVLPVSAYMVATCGQSGFYSMRSKAV","","NO TIGR ID corresponds to this gene.","hypothetical protein","Periplasm, Extracellular","No hit found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG1521","1831117","1829531","1587","GTGGCAGAGTACTTTCAAGACGATTTGGGCTTTCGTCCTTTCAATGCACAAGTCAATCATTGTACACGAGATCTTGGTTTCAGATTATATGAGCCATCCGATGTCCTGTTCGCTTCTTTTTCGGACGAATCGGGTATGCGAACTTACGTCCGAACGCTCAGCTTCATATTAAGCAAGGCTGTTGCAGACATATTGCCCGGGAGCAAACTTTTCATCGAACATTCATTGTCCAACGGTTACTATTGTCAGATCAAGAATGCTCATATGATCACACCCGGAGAGATCGTGCGGATCAAGGAGCGAATGGAGTCGCTTATAGTCGCAGACATACCTTTCCGAGCACATTGTGAGCGCACCGAAGAGGTGGCGGCCATGTTCCGCTCGATGGGCTATGAGGACAAAGCCGATTTGCTGGAGACGAAAGGCATGCCATATTCTCGCTATTATGATTTGGATGGCTACCCCGATTATTATTATGGTAGCCTTGCCCCATCGACCGGCTATATCGGACTGTTCGGCTTGGAGCCTTATTTGGATGGAGTCCTTCTGCGTATTCCGAGACGAGATAAGCCGGAGGAACTGGCACCATTCGTGCCTCAACCGATGATGAGACAAGTCTTTGCCGATCATGATCGACTTTTGGATATTCTGCAAGTGACTCACGTAGGCAGCCTGAATAAAGCTGTCGATCGAAACGACATCTCCACGATGGTACAGGTGTCGGAGGCTATGCAGGAGAAACAGATTGCCGCCATAGCCGATGATATAGCACATAAATACAAAGAAGGAGTAAGGGTGGTACTAATCTCGGGGCCTTCCTCTTCGGGTAAAACCACTTTCTGCAAAAGACTGCAAACGCAGCTCCTGACCAATTATATTCGCCCCTACGGACTTTCGCTCGATGACTATTTCATCAACCGCGAGGATTCGCCACGCGATGAATCCGGAGACTATGATTTCGAATCGCTCTACGCTTTGGATCTGCCCCTTTTCAATAAGGATCTGAAGCAGATGATCGCCGGTGAAGAAGTGAGCCTGCCCACCTATGACTTCGCAACCGGGATGAGGGTCTACAAAGGAAATACCATACAGCTGAAAGACGGAGATATCCTGATCCTCGAAGGCATTCATGCGCTGAATCCGGAGCTGATACCCGGTGTGCCCGAATCAAGTACGTATAAGATCTATGTGAGCGCTCTCACTGCAATAGGATTGGATGCTCACAATCGGATCCCCAGTACGGACAACCGACTGATCAGGCGATTGGTGCGCGACTATCGCTATCGCAATTACTCCGGTCTGGGGACATTGCGTCGTTGGCAGAGTGTCCGACGAGGAGAGGAAAAATGGGTATTCCCGTTCCAAGAGAATGCACACGTCATGTTCAATAGTGCCATGCTCTACGAGTTGGCTGTTTTGCGTGCTTACGCGGAGCCGATCTTACAGGCAATCCCTCGTAACGAACCGGAATATGCTGAAGCCCGTAGACTGCTACGCTTTTTGAGCAGTTTCCGCATGATACCGGCACGTTTGCTTCCGAACAACTCTCTGATGCGTGAGTTCCTCGGAGGAAGCACATTCCACTAC","6.00","-6.49","60568","VAEYFQDDLGFRPFNAQVNHCTRDLGFRLYEPSDVLFASFSDESGMRTYVRTLSFILSKAVADILPGSKLFIEHSLSNGYYCQIKNAHMITPGEIVRIKERMESLIVADIPFRAHCERTEEVAAMFRSMGYEDKADLLETKGMPYSRYYDLDGYPDYYYGSLAPSTGYIGLFGLEPYLDGVLLRIPRRDKPEELAPFVPQPMMRQVFADHDRLLDILQVTHVGSLNKAVDRNDISTMVQVSEAMQEKQIAAIADDIAHKYKEGVRVVLISGPSSSGKTTFCKRLQTQLLTNYIRPYGLSLDDYFINREDSPRDESGDYDFESLYALDLPLFNKDLKQMIAGEEVSLPTYDFATGMRVYKGNTIQLKDGDILILEGIHALNPELIPGVPESSTYKIYVSALTAIGLDAHNRIPSTDNRLIRRLVRDYRYRNYSGLGTLRRWQSVRRGEEKWVFPFQENAHVMFNSAMLYELAVLRAYAEPILQAIPRNEPEYAEARRLLRFLSSFRMIPARLLPNNSLMREFLGGSTFHY","1831117 1829531","TIGR ID: PG1745","uridine kinase","Cytoplasm","Residues 1-529 have 39% similarity to AE001744,T. maritima uridine kinase-related protein.Residues 45-529 have 32% similarity to AE001240, T. pallidum uridine kinase (udk).Residues 266-460 have 27% similarity to AE002130, U. urealyticum uridine kinase.This sequence is similar to BT2527. ","
InterPro
IPR000764
Family
Uridine kinase
PTHR10285:SF6\"[272-474]TURIDINE CYTIDINE KINASE I
InterPro
IPR003593
Domain
AAA+ ATPase, core
SM00382\"[263-424]TAAA
InterPro
IPR006083
Family
Phosphoribulokinase/uridine kinase
PF00485\"[266-471]TPRK
InterPro
IPR013989
Domain
Development and cell death
SM00767\"[41-128]Tno description
noIPR
unintegrated
unintegrated
G3DSA:3.30.980.10\"[43-106]Tno description
G3DSA:3.40.50.300\"[265-462]Tno description
PTHR10285\"[272-474]TURIDINE KINASE RELATED


","BeTs to 9 clades of COG0572COG name: Uridine kinaseFunctional Class: FThe phylogenetic pattern of COG0572 is ----Y-vceb-h--gpol-n-Number of proteins in this genome belonging to this COG is 2","***** IPB001324 (Phosphoribulokinase family) with a combined E-value of 7.9e-06. IPB001324A 266-284 IPB001324C 366-377 IPB001324D 415-465","Residues 393-529 are 38% similar to a (URIDINE KINASE UDK) protein domain (PD203316) which is seen in O83673_TREPA.Residues 265-384 are 49% similar to a (KINASE TRANSFERASE ATP-BINDING URIDINE MONOPHOSPHOKINASE) protein domain (PD003288) which is seen in O83673_TREPA.Residues 45-259 are 20% similar to a (URIDINE KINASE UDK) protein domain (PD213856) which is seen in O83673_TREPA.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Mar 1 15:21:08 MST 2001","Wed Dec 17 11:18:29 2003","Thu Mar 1 15:21:08 MST 2001","Thu Mar 1 15:21:08 MST 2001","Thu Mar 1 15:21:08 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No significant paralogs found using local BLAST search.","Thu Mar 1 15:21:08 MST 2001","Thu Mar 1 15:21:08 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 266 to 471 (E-value = 4e-08) place PG1521 in the PRK family which is described as Phosphoribulokinase / Uridine kinase family (PF00485)","Tue May 15 17:03:32 MDT 2001","34541370","","","","","","1","","","PG1745" "PG1522","1832323","1831196","1128","ATGTATCATTCTCTATTTGAAAGCCTCTGCATGGTTCCGGACCCACGGATAGAGCGTAAAAAAATTTATCCTCTTGATTTTTTACTGCTGATCGTTTTCCTCTCTACACTCTCAGGCAATACCTCTTGGTATGAGATTGAAGATTATGCCGAGGAATACGAAGAAGAATTGAAAAGTCTATACGAAATGCTTACCGGCCATCAGCTTATGCATACCATGCCTTCTCATGATACTCTCAACAGGAGCATCAGTCTGTTGGATGTAGAAGCTTTTGAGGGGGCTTATAAGCGATGGATTGAAGGCTTTATCTCGGCCACTTCGGGTAAACATATTTGCATTGATGGCAAGACGATGCGGGGAGTGAAGAAACTCTCTTTCGATACACAATCCCATGTCGTCTCTGCCTTTTCACCACAAGATATGTGCAGTCTTGCCCAACTCTACATCGACCGAAAAACAAACGAAATACCGGCTATACATCAACTTCTTGATTTGCTTGACTTGAACGGGGCTGTTGTCTCCATTGATGCCATAGGTACACAAACTGCCATTGCCGAACAAATTATCGATAAGGGCGGAAACTATGTATTGTGTGTTAAAGCGAATCAAAGTTTGAGTCTGCAAGAGATTGAAGCCTATTTCTGCCCTCTTTTTCAGAAACATATCCTCCTTGACGAACAGACGGAACTATCTCACGGACGCATAGAAACACGTCGCTATGAAAGTATTCTCAATCCCTTGGAGATAGAAGCCAACGAGGTATTAACTCGCTGGAAAGGCTTGAGGTCGATACACAAAGTTGTACGCAAACGAAGGGATAAAAAGAGTGACAAAACGAGTGAAGAAGTGGCCTACTACATTTCGTCATTAACAGATGTTTCTTCATTGAAACAAGCTATTCGTGGGCATTGGGCGATAGAGAATAAGTTACACCACTGTTTGGATGTCTATTTCGGACACGATGCCTCGCACAAGAGAACGAGGAATGTGGCGCAGATTATGGATATCATTCAAAAGATTAATTTACTCATTATAGAGAGACTAAAAACGAATATGAAGTCCTCAATCCCTCGCATCCAAAAGAAACTGGCTCGAATGAAGCCACAACAACTAATCACAATACAATTT","7.40","2.35","43313","MYHSLFESLCMVPDPRIERKKIYPLDFLLLIVFLSTLSGNTSWYEIEDYAEEYEEELKSLYEMLTGHQLMHTMPSHDTLNRSISLLDVEAFEGAYKRWIEGFISATSGKHICIDGKTMRGVKKLSFDTQSHVVSAFSPQDMCSLAQLYIDRKTNEIPAIHQLLDLLDLNGAVVSIDAIGTQTAIAEQIIDKGGNYVLCVKANQSLSLQEIEAYFCPLFQKHILLDEQTELSHGRIETRRYESILNPLEIEANEVLTRWKGLRSIHKVVRKRRDKKSDKTSEEVAYYISSLTDVSSLKQAIRGHWAIENKLHHCLDVYFGHDASHKRTRNVAQIMDIIQKINLLIIERLKTNMKSSIPRIQKKLARMKPQQLITIQF","1832323 1831196","Note BLAST similarities to E.coli and V.cholerae proteins.Member of IS5 family of elements.TIGR ID: PG1746","ISPg2 (PGIS2) transposase","Cytoplasm","PG1522 is equivalent to the previously sequenced gb|AAC45368.1 in GenbBANK. Residues 4-364 are 32% similar to an uncharacterized sequence from E.coli 0157:H7 (AE005200). Residues 11-358 are 31%similar to the RfbQRSO22-3 sequence of V.cholerae (AF004383).","
InterPro
IPR002559
Domain
Transposase, IS4-like
PF01609\"[110-344]TTransposase_11


","No hit to the COGs database.","***** PF01811 (Transposase) with a combined E-value of 2e-24. PF01811A 0-35 PF01811B 36-52 PF01811E 134-181 PF01811F 183-207","Residues 132-264 are identical to a (PROTEIN TRANSPOSASE REGION PUTATIVE) protein domain (PD004339) which is seen in P95492_PORGI.Residues 332-376 are identical to a (PUTATIVE TRANSPOSASE) protein domain (PD054580) which is seen in P95492_PORGI.Residues 279-331 are identical to a (PROTEIN TRANSPOSASE PUTATIVE REGION) protein domain (PD004012) which is seen in P95492_PORGI.Residues 1-131 are 83% similar to a (PUTATIVE TRANSPOSASE) protein domain (PD103322) which is seen in P95492_PORGI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Thu Feb 8 13:11:36 MST 2001","Thu Feb 8 11:52:13 MST 2001","Thu Feb 8 12:08:28 MST 2001","Thu Feb 8 11:52:13 MST 2001","Fri Feb 16 15:49:49 MST 2001","Fri Feb 16 15:49:49 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1522 is identical to PG1905, PG1185, PG0775 and PG0249, all predicted ISPg2 elements. PG1522 is similar to PG0943 and weakly similar to PG1058, PG0889, PG1795 and PG1855.","Thu Feb 8 11:52:13 MST 2001","","No significant hits to the PDB database (E-value < E-10).","","","Residues 110 to 344 (E-value = 5.8e-39) place PG1522 in the Transposase_11 family which is described as Transposase DDE domain (PF01609)","","34541371","","Wang,C.Y., Bond,V.C. and Genco,C.A.Identification of a second endogenous Porphyromonas gingivalisinsertion element. J. Bacteriol. 179 (11), 3808-3812 (1997)","","Thu Feb 8 12:17:27 MST 2001","","1","","","PG1746" "PG1523","1832908","1832474","435","ATGGAAACAATCGGTATTTGTAGCGACCACGCCGGATATGAATTGAAAGAACGCGTAAAGGCATGGCTTGCAGAGCAAGGCATCACGACAAAAGACTTCGGATGCCACTCTTCCGAAAGCGTCGATTATCCTGATTTTGCCCACCCATTAGGCTCTGCCATCGAACGGGGGGAGCTGAATCGTGGCATATCGATCTGCGGTTCCGGCAACGGCATATCCATGGTGATGAACAAATATCCCCACGTACGTGCCGCCCTTTGCTGGACTGAGGAGATCGCTCGTTTGGCTCGTCAGCACAATGATGCCAACGTCCTCTCGCTGCCTGCACGCTTCATCTCGGACGAACAGGCCAAAGCTATCTTGAAAATCTATTTGGAGACGCCTTTTGAAGGGGGACGCCACAAGGCCCGAATAGACAAAATTCCCATCCGGAAG","7.50","1.25","16120","METIGICSDHAGYELKERVKAWLAEQGITTKDFGCHSSESVDYPDFAHPLGSAIERGELNRGISICGSGNGISMVMNKYPHVRAALCWTEEIARLARQHNDANVLSLPARFISDEQAKAILKIYLETPFEGGRHKARIDKIPIRK","1832908 1832474","TIGR ID: PG1747","ribose 5-phosphate isomerase","Cytoplasm","Residues 4-141 have 46% simlarity to AE001768, T. maritima ribose 5-phosphate isomerase.Residues 4-138 have 44% similarity to AE000725, A. aeolicus ribose 5-phosphate isomerase B.Residues 2-144 have 41% simlarity to AL139076, C. jejuni putative ribose 5-phosphate isomerase. ","
InterPro
IPR003500
Family
Ribose/galactose isomerase
PIRSF005384\"[4-145]TRpiB_LacA_B
PF02502\"[3-142]TLacAB_rpiB
TIGR00689\"[4-145]TrpiB_lacA_lacB
InterPro
IPR004785
Family
Ribose 5-phosphate isomerase B
TIGR01120\"[3-145]TrpiB
noIPR
unintegrated
unintegrated
G3DSA:3.40.1400.10\"[2-141]TG3DSA:3.40.1400.10
SSF89623\"[1-142]TSSF89623


","BeTs to 9 clades of COG0698COG name: Ribose 5-phosphate isomerase RpiBFunctional Class: GThe phylogenetic pattern of COG0698 is -----qvcebr-ujgp----xNumber of proteins in this genome belonging to this COG is 1","***** BP04509 (ISOMERASE PROTEIN GALACTOSE-6-) with a combined E-value of 1.1e-32. BP04509A 2-34 BP04509B 54-86 BP04509C 87-130","Residues 4-47 are 61% similar to a (ISOMERASE PROTEIN GALACTOSE-6-PHOSPHATE) protein domain (PD010571) which is seen in O86950_THENE.Residues 77-141 are 56% similar to a (ISOMERASE PROTEIN GALACTOSE-6-PHOSPHATE SUBUNIT LACTOSE) protein domain (PD004509) which is seen in O86950_THENE.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Mar 1 15:28:42 MST 2001","Thu Mar 1 15:28:42 MST 2001","Thu Mar 1 15:28:42 MST 2001","Thu Mar 1 15:28:42 MST 2001","Thu Mar 1 15:28:42 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 15:28:42 MST 2001","-62% similar to PDB:1O1X Crystal structure of ribose-5-phosphate isomerase RpiB (TM1080) from Thermotoga maritima at 1.90 A resolution (E_value = 1.0E_28);-54% similar to PDB:1NN4 Structural Genomics, RpiB/AlsB (E_value = 2.7E_21);-49% similar to PDB:1USL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS RIBOSE-5-PHOSPHATE ISOMERASE, RPIB, RV2465C, COMPLEXED WITH PHOSPHATE. (E_value = 5.1E_12);-49% similar to PDB:2BES STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS RIBOSE-5-PHOSPHATE ISOMERASE, RPIB, RV2465C, IN COMPLEX WITH 4-PHOSPHO-D-ERYTHRONOHYDROXAMIC ACID. (E_value = 5.1E_12);-49% similar to PDB:2BET STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS RIBOSE-5-PHOSPHATE ISOMERASE, RPIB, RV2465C, IN COMPLEX WITH 4-PHOSPHO-D-ERYTHRONATE. (E_value = 5.1E_12);","","","Residues 62 to 142 (E-value = 1.4e-38) place PG1523 in the LacAB_rpiB family which is described as Ribose/Galactose Isomerase (PF02502)","Tue May 15 17:08:42 MDT 2001","34541372","","","","","","1","","","PG1747" "PG1524","1835022","1832998","2025","ATGAATGACAAAAAGCTGATGAACAAGGCTGCGGACAATATTCGAGTATTGGCCGCTGCAATGGTGGAAAAAGCCAAAAGCGGTCACCCGGGCGGAGCCATGGGCGGAGCGGACTTTGTAAACGTACTCTTCTCCGAGTATCTGATCTTTGACCCGAAGAACCCGCAATGGGCCGGTCGCGATCGCTTCTTCTTGGATCCGGGACATATGTCCCCGATGCTGTATGCTCAGCTGGCATTGACGGGCAAGTACTCCATGGATGACCTCAAAGCATTCCGCCAATGGGGCAGCATCACACCCGGACACCCCGAAGTAGATGTCATGCACGGAGTGGAGAACACATCCGGCCCCTTGGGACAAGGCCACACCTATGCTGTCGGTGCAGCCATCGCAGCCAAATTCCTCGCTCATCGCTTCGGCTGGATGATGAGCCAAACGATCTATGCCTACATTTCCGATGGAGGAATACAGGAGGAAGTATCACAAGGAGCCGGCCGAATCGCCGGACACCTTGGGCTGAACAATCTGATTATGTTCTACGACTCGAACGACGTACAGCTTTCTACGACAGTGAAAGAGGTGGCAAGCGAAGACGTAGCCATGAAATATCGTGCATGGGGTTGGAAGGTAATAGAGATTGCAGGTAACGATGCGGATGAAATTCGCAAGGCCCTGACCGAAGCCAAGGGAGAGGGCGAGCGTCCCACACTTATCATCGGGCACACCCTTATGGGCAAAGGTGCCGTAGGCGAGGATGGCAGTTCGTATGAGAATATGGTGAGCACGCATGGACAGCCGCTATCGGCTGCCGGAGCATCATTCGCCGAAACGGTCAAGAACCTCGGAGGCAATCCCGAAGAGCCGTTCGCCATCTTCCCCGAAGTTCGGGAAATGTATGCCGCTCGCTTGGCAGAACTGGAGCAGATCATGGCAGAGCGTCGCGAAGAAGAGCAACGTTGGCGCAGCACCCATCCTGATTTGGCAGCCAAGTTCGATGCGTGGTTTGCCGGTCAAACGCCCCAAATCGACTGGAAAGCTATAGAGCAGAAACCCAATCAGGCTACCCGCTCCGCTTCTGCCACCGTGTTGGGTACTCTTGCCGGAGAAGTGGAGAATATGATTGTAACCTCTGCCGACCTTTCCAATTCAGACAAGACCGATGGCTTCTTGAAGAAAACCCACGCCATGAAGAAAGGAGATTTCAGTGGAGCATTCCTGCAGATGGGTGTATCGGAGCTGACCATGGCCTGCCTCTGTATCGGTATGGCTCTTCATGGAGGCGTCATTCCGGCTTGCGGTACCTTCTTCGTATTTTCCGACTACATGAAACCGGCCGTTCGTATGGCTGCCCTGATGGAATTGCCCGTCAAGTTTATCTGGACGCACGATGCTTTCCGTGTGGGCGAGGATGGTCCTACTCACGAACCGGTGGAACAGGAGGCGCAAATTCGCCTGATGGAGAAGCTGCACAATCACAGCGGCCGTCGCTCCATGCTGGTCCTTCGTCCGGCCGATGTGCAAGAGACTACCGTAGCTTGGAAGATGGCTATGGAGAATACGCATACTCCTACAGCTCTGATCCTTTCGCGTCAGAATATCACCGATCTGCCTGCTAACGACAGTCGGTACGAAGAAGCGTTGCAGGCTGAAAAGGGAGCTTATATCGTCAATACGGATCAGAATATCGAAGTAGTTCTCCTGGCCAGCGGATCTGAGGTGTCCACATTGGTCGAGGGTGCAGAGCTGCTGCGCAAACGCGGTGTAAAACTTCGTATCGTGTCGGTACCTTCCGAAGGACTTTTCCGTTCGCAGAGTGCCGAGTATCAGGAGGAAGTGCTTCCCATCGGTATCAGGCGTTTCGGCCTGACAGCCGGATTGCCCGTCAACCTGGAAGGCCTTGTGGGTGAAAGCGGTGCCGTCTGGGGATTGAACTCTTTCGGATTCTCCGCTCCCTATAAGGTGCTGGACGAGAAACTCGGCTTTACGGCAGAGAATGTGTACGAACAAGTGTTGAAAATACTCCAC","5.40","-16.73","73790","MNDKKLMNKAADNIRVLAAAMVEKAKSGHPGGAMGGADFVNVLFSEYLIFDPKNPQWAGRDRFFLDPGHMSPMLYAQLALTGKYSMDDLKAFRQWGSITPGHPEVDVMHGVENTSGPLGQGHTYAVGAAIAAKFLAHRFGWMMSQTIYAYISDGGIQEEVSQGAGRIAGHLGLNNLIMFYDSNDVQLSTTVKEVASEDVAMKYRAWGWKVIEIAGNDADEIRKALTEAKGEGERPTLIIGHTLMGKGAVGEDGSSYENMVSTHGQPLSAAGASFAETVKNLGGNPEEPFAIFPEVREMYAARLAELEQIMAERREEEQRWRSTHPDLAAKFDAWFAGQTPQIDWKAIEQKPNQATRSASATVLGTLAGEVENMIVTSADLSNSDKTDGFLKKTHAMKKGDFSGAFLQMGVSELTMACLCIGMALHGGVIPACGTFFVFSDYMKPAVRMAALMELPVKFIWTHDAFRVGEDGPTHEPVEQEAQIRLMEKLHNHSGRRSMLVLRPADVQETTVAWKMAMENTHTPTALILSRQNITDLPANDSRYEEALQAEKGAYIVNTDQNIEVVLLASGSEVSTLVEGAELLRKRGVKLRIVSVPSEGLFRSQSAEYQEEVLPIGIRRFGLTAGLPVNLEGLVGESGAVWGLNSFGFSAPYKVLDEKLGFTAENVYEQVLKILH","1835022 1832998","TIGR ID: PG1748","transketolase","Cytoplasm","Numerous significant hits to transketolase proteins in gapped BLAST; e.g. residues 4-674 are 40% similar to dbj|BAB06071.1| transketolase of Bacillus halodurans, residues 10-674 are 39% similar to gb|AAF11802.1|AE002058_2 transketolase of Deinococcus radiodurans, residues 10-666 are 40% similar to gb|AAK05723.1|AE006393_2 transketolase of Lactococcus lactis subsp. lactis.This sequence is similar to BT0347.","
InterPro
IPR005474
Domain
Transketolase, N-terminal
PF00456\"[6-340]TTransketolase_N
InterPro
IPR005475
Domain
Transketolase, central region
PF02779\"[351-535]TTransket_pyr
PS00802\"[468-484]TTRANSKETOLASE_2
InterPro
IPR005478
Family
Bacterial transketolase
PIRSF000418\"[2-675]TTransketolase
PTHR11624:SF1\"[22-669]TBacTransketolase
InterPro
IPR009014
Domain
Transketolase, C-terminal-like
G3DSA:3.40.50.920\"[551-674]TTransketo_C_like
SSF52922\"[542-675]TTransketo_C_like
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.970\"[2-337]T\"[337-546]TG3DSA:3.40.50.970
PTHR11624\"[22-669]TPTHR11624
SSF52518\"[1-328]T\"[331-537]TSSF52518


","BeTs to 12 clades of COG0021COG name: TransketolaseFunctional Class: GThe phylogenetic pattern of COG0021 is -m--YqVCEbrhujgp-lin-Number of proteins in this genome belonging to this COG is 1","***** IPB000360 (Transketolase) with a combined E-value of 1e-46. IPB000360A 27-40 IPB000360B 59-73 IPB000360C 110-121 IPB000360D 144-183 IPB000360E 235-249 IPB000360F 461-496 IPB000360G 563-594","Residues 14-666 are 39% similar to a (PYRUVATE DEHYDROGENASE THIAMINE PYROPHOSPHATE E1 SUBUNIT) protein domain (PD000580) which is seen in TKT_BACSU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Mar 22 12:52:39 MST 2000","Tue Dec 2 16:14:11 2003","Tue Mar 27 16:34:33 MST 2001","Tue Mar 27 16:34:33 MST 2001","Tue Mar 27 16:34:33 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 27 16:34:33 MST 2001","-53% similar to PDB:1ITZ Maize Transketolase in complex with TPP (E_value = 9.8E_110);-55% similar to PDB:1QGD TRANSKETOLASE FROM ESCHERICHIA COLI (E_value = 1.7E_109);-52% similar to PDB:1R9J Transketolase from Leishmania mexicana (E_value = 2.7E_99);-51% similar to PDB:1GPU TRANSKETOLASE COMPLEX WITH REACTION INTERMEDIATE (E_value = 9.5E_97);-51% similar to PDB:1NGS COMPLEX OF TRANSKETOLASE WITH THIAMIN DIPHOSPHATE, CA2+ AND ACCEPTOR SUBSTRATE ERYTHROSE-4-PHOSPHATE (E_value = 9.5E_97);","","","Residues 6 to 340 (E-value = 3e-95) place PG1524 in the Transketolase_N family which is described as Transketolase, thiamine diphosphate binding domain (PF00456)Residues 353 to 535 (E-value = 2.8e-39) place PG1524 in the Transket_pyr family which is described as Transketolase, pyridine binding domain (PF02779)","Tue Dec 2 16:14:11 2003","34541373","","","","","","1","","","PG1748" "PG1525","1835466","1837283","1818","ATGAAAACCCTGATAACAAATCGTTTCCTCCTGCTTTTTGTCTTTTTGCTTACTGCTGTTTCTGGGCAGGGGCAAGAAGTCTACTATCCGGGGTCTGTGGTTTTTCCTGCCGATGCCACTTTGGAACAGAAGGTGGAGATGGCGGCAAAGGTAGTCCCTACCCTACAACAGCTGGCTTGGCAGCAGATGGAGCTGACGGCATTTCTGCACTTCGGCATCAATACTTTTACCGACAGTGAGTGGGGTGATGGGAAAGAAGATCCGGCACTCTTCAACCCGGTGGAGCTGGATGCTCGGCAATGGGTACGAATACTGCACGAAGCGGGCTTTCGCATGGTAATCCTTACGGCCAAGCACCACGATGGTTTTTGTCTCTGGCCTACAGCCACCACGCGCCATTCGGTGGCTTCATCTCCGTGGCGAGAGGGCAAAGGCGATGTGGTGAAAGAAGTCCGAGCAGCGTGCGAAGAGTATGGTATGAAGTTCGGCATTTATCTGTCTCCTTGGGATCGCAATGCGGAGTGCTATGGCGATTCGCACCGTTACAATCGGTTTTTTGTCAGTCAGCTTACCGAACTGCTCACTCACTATGGAGAAGTACACGAAGTATGGTTCGATGGAGCCAATGGCGAAGGGCCCAACGGCAAGCGACAGGAATATGATTGGGAGACATTCTACGACACCATCCGCCGACTGCAACCCCAAGCCGTTATGGCTATCATGGGAGACGATGTGCGCTGGGTAGGCAATGAGCGTGGACTGGGACGAACCACCGAGTGGAGTGCCACAGTGCTTACGCCGGGTATTTATTCCCGTTCGAAGACGGAACGCAATCGTCTGGGAATTAGGGAGAACTCTCCGGATTTGGGCAGCCGAGAGGTGCTGAAAGAAGCTGGCGAAATCTTTTGGTATCCGTCCGAAGTGGACGTTTCTATTCGTCCGGGTTGGTTTTACCATGCTGCTGAGGACAAGAAAGTCAAGTCATTGGACAAGTTGGTGGATATTTACTTCCAGTCCGTAGGTTATAATTCAGTACTCCTGCTCAATGTACCGCCCGATAGGCGAGGCCTGATCCACGAAGCCGATGCCTTGCGCCTGAAGGAGTGGGCTGACTATCTCGGTCGGGCCTTTGCTCATGACAGGGTAGTGGATTCGGCGCGCTATGCCGTTGTTCAAGGACATGCCGTCGAAGAATATGCACTCGAATCTAAGACGCACATCAATATACTGATGCTCCAAGAGGATATTACTAAGGGGCAGCGCACCGAGGCTTTCACTGTGGAGGCGTGGGTGGATGGAGCATGGCAGGAGATCGGCCGCGGTACGACTATCGGCTATAAGCGACTTCTTCGCATTCCTGCAGTCGAGACGGATCGGATACGGGTACGTATAGAACAGTGTCGTCTGCCGGTCAATCTGTGTCGCGTAGCTGTGTATTATGCCGAGCCACCGGAGCAGGTCGTTGCCGATGAGTCGTGGAACGATATTCCACGTGCAGACTGGAGGCTGCTTTCGGACGATCCATTGACTATCGATCTGGGTAGAGAGGTCATGTTGCGCGCTTTTACCTATGCGCCATATAAGGCCGAAGCCAAGCCTACGACTGCCGTCCGCTATCGGCTGGCTGTGAGTGAAGATGGCAGACAGTGGCGAGAGATCCCGACTATGGGAGAGTTTGCCAATGTGATCAATAATCCTCTGCCTCAAACTGTAGATATGAATCAAATCGTCCGGACGCGCTTCATCCGCTTGGATGCAACTGCCGCATCGGGAGATAAAGCCGTAATCACGATGCAGGAAATCGGCGTGACTGTGGAA","5.40","-13.03","69188","MKTLITNRFLLLFVFLLTAVSGQGQEVYYPGSVVFPADATLEQKVEMAAKVVPTLQQLAWQQMELTAFLHFGINTFTDSEWGDGKEDPALFNPVELDARQWVRILHEAGFRMVILTAKHHDGFCLWPTATTRHSVASSPWREGKGDVVKEVRAACEEYGMKFGIYLSPWDRNAECYGDSHRYNRFFVSQLTELLTHYGEVHEVWFDGANGEGPNGKRQEYDWETFYDTIRRLQPQAVMAIMGDDVRWVGNERGLGRTTEWSATVLTPGIYSRSKTERNRLGIRENSPDLGSREVLKEAGEIFWYPSEVDVSIRPGWFYHAAEDKKVKSLDKLVDIYFQSVGYNSVLLLNVPPDRRGLIHEADALRLKEWADYLGRAFAHDRVVDSARYAVVQGHAVEEYALESKTHINILMLQEDITKGQRTEAFTVEAWVDGAWQEIGRGTTIGYKRLLRIPAVETDRIRVRIEQCRLPVNLCRVAVYYAEPPEQVVADESWNDIPRADWRLLSDDPLTIDLGREVMLRAFTYAPYKAEAKPTTAVRYRLAVSEDGRQWREIPTMGEFANVINNPLPQTVDMNQIVRTRFIRLDATAASGDKAVITMQEIGVTVE","1835466 1837283","TIGR ID: PG1750","possible alpha-1,3/4-fucosidase precursor","Cytoplasm","Residues 49-464 have 34% similarity to AE003864, X. fastidiosa hypothetical protein.Residues 52-195 have 59% similarity to AC005851, A. thaliana unknown protein.Residues 182-468 and 42-170 have 59% and 54% similarity to U39394, Streptomyces sp. alpha-1,3/4-fucosidase precursor.This sequence is similar to BT1625.","
InterPro
IPR000421
Domain
Coagulation factor 5/8 type, C-terminal
PF00754\"[509-601]TF5_F8_type_C
PS50022\"[501-603]TFA58C_3
InterPro
IPR000933
Family
Glycoside hydrolase, family 29 (alpha-L-fucosidase)
PTHR10030\"[52-289]TGlyco_hydro_29
PF01120\"[97-129]TAlpha_L_fucos
InterPro
IPR008979
Domain
Galactose-binding like
SSF49785\"[464-601]TGal_bind_like
InterPro
IPR013781
Domain
Glycoside hydrolase, catalytic core
G3DSA:3.20.20.80\"[44-373]TGlyco_hydro_cat
noIPR
unintegrated
unintegrated
G3DSA:2.60.120.260\"[509-603]TG3DSA:2.60.120.260
SSF51445\"[46-373]TSSF51445


","No hit to the COGs database.","***** IPB000933 (Glycosyl hydrolase family 29 (Alpha-L-fucosidase)) with a combined E-value of 3.4e-10. IPB000933B 104-134 IPB000933C 142-183 IPB000933F 342-358","Residues 182-473 are 35% similar to a (ALPHA-1,3/4-FUCOSIDASE PRECURSOR EC 3.2.1.51 SIGNAL) protein domain (PD215822) which is seen in Q9Z4I9_BBBBB.Residues 52-172 are 60% similar to a (PRECURSOR HYDROLASE GLYCOSIDASE SIGNAL) protein domain (PD186636) which is seen in Q9ZUV2_ARATH.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon Jun 4 17:30:59 MDT 2001","Mon Dec 8 15:17:18 2003","Thu Mar 1 15:38:45 MST 2001","Thu Mar 1 15:38:45 MST 2001","Thu Mar 1 15:38:45 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 16-244 have 28% similarity to PG1639, a alpha-L-fucosidase.","Mon Jun 4 17:30:59 MDT 2001","Thu Mar 1 15:38:45 MST 2001","-59% similar to PDB:1HL8 CRYSTAL STRUCTURE OF THERMOTOGA MARITIMA ALPHA-FUCOSIDASE (E_value = 5.4E_11);-59% similar to PDB:1HL9 CRYSTAL STRUCTURE OF THERMOTOGA MARITIMA ALPHA-FUCOSIDASE IN COMPLEX WITH A MECHANISM BASED INHIBITOR (E_value = 5.4E_11);-59% similar to PDB:1ODU CRYSTAL STRUCTURE OF THERMOTOGA MARITIMA ALPHA-FUCOSIDASE IN COMPLEX WITH FUCOSE (E_value = 5.4E_11);-59% similar to PDB:2GML Crystal Structure of Catalytic Domain of E.coli RluF (E_value = 5.4E_11);-43% similar to PDB:1SDD Crystal Structure of Bovine Factor Vai (E_value = 5.4E_11);","","","No significant hits to the Pfam 11.0 database","Tue May 15 17:12:04 MDT 2001","34541374","","","","","","1","","","PG1750" "PG1526","1837423","1838550","1128","ATGAATACATATTTCGATAACGCCACCTCCTCTTATCCTAAACCCGATGCCATGCGTCAGGCTTTGGCGTATTTCTACGATGTGCCGGTAGGGAGTTACGGCCGCAGCCGCGATAGAGAGACGCTGCGCGTTACTTCGGAAGTAGAAGAGTTGCGCGATGCTTTGGCCGACCTGATCGGTGTATCCGAGTCGGCTCATATCTGTTTTGCGGATAATGCCACTACAGGTATCAATACCATTCTTCGAGGCTCTTTGCAGGCAGGCTGTAGCGTGCTGGTCAGTCCGATGGAGCACAATGCTGTGATGCGTCCGCTCCAATGTCTGGCTGATACCATCGGTCTAAAGATTGCCCTCATGCCTTCGATGCCTGACGGACGAGTCGATACCGACCGGCTGGTCAGTGCCATTCCCACAGATACGGCTCTCGCTGTGGTCAATCTGGAGAGCAATGTCAATGGTCTGGTCCAGCCCATAGAGGAGATAGCCCGTTTGCTCACACAGGAGCGCGGCATCCCTATCTTGGCCGATGCTACGCAGTATCTCGGAACTTCACGACTCAAAGCTGATGAATTGGGGTTGGCTTATGTGGCTTTTACCGGTCACAAAGGACTTTTGGGGCCTTCGGGTACGGGCGGATTCTATATCCGTGACCCACGAAGCGTTCACCCTCTGACCACAGGTGGCAATGGTTTGCATTCGGCTGACTGGACAGTGGGGGTGGAGATGCCGGAGCGGTTTATGGCCGGCACGGTCAATGTGCTTGGGCTTACCGCTTTGCTGGCTTCCGTTCGCCAACTTCCGCCCTTTCGTATCAGTCGGGACGCGTGGAAACAGTGTATGCAGCAGATGCAGCGGTTCCCGGGACTTCGGGTGTATGGTGCTGCTGACCCGATCGAGCAGGGCTATCTATGCTCGCTGACGCATGACCGGCTGACACCTGCACGTATAGGCGATGCTCTGTACGAAGCATTCGACATTGTCACTCGCACGGGGATTCATTGTGCGCCGTTGGCGCATCGATCGATTGGTACCTTCGCTACCGGAACAGTACGTTTGTCGCTCTCTCCCTATCACGAAGAAGCTGATTTGGAGTATCTCCTAAATGCTTTGAGTCATGTCTTACGAAGC","6.00","-5.86","40833","MNTYFDNATSSYPKPDAMRQALAYFYDVPVGSYGRSRDRETLRVTSEVEELRDALADLIGVSESAHICFADNATTGINTILRGSLQAGCSVLVSPMEHNAVMRPLQCLADTIGLKIALMPSMPDGRVDTDRLVSAIPTDTALAVVNLESNVNGLVQPIEEIARLLTQERGIPILADATQYLGTSRLKADELGLAYVAFTGHKGLLGPSGTGGFYIRDPRSVHPLTTGGNGLHSADWTVGVEMPERFMAGTVNVLGLTALLASVRQLPPFRISRDAWKQCMQQMQRFPGLRVYGAADPIEQGYLCSLTHDRLTPARIGDALYEAFDIVTRTGIHCAPLAHRSIGTFATGTVRLSLSPYHEEADLEYLLNALSHVLRS","1837417 1838550","From gi:13431422:CsdA of E. coli catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. L-cysteine sulfinic acid is the best substrate. Functions as a selenium delivery protein in the pathway for the biosynthesis of selenophosphate. Belongs to class-V of pyridoxal-phosphate-dependent aminotransferases.TIGR ID: PG1751","NifS-like cysteine sulfinate desulfinase (cysteine desulfurase)","Cytoplasm","Numerous significant hits in gapped BLAST to NifS-like cysteine sulfinate desulfinase; e.g. residues 2-373 are 29% similar to AE000901 of Methanothermobacter thermautotrophicus, residues 4-373 are 29% similar to AE003977 of Xylella fastidiosa, residues 4-374 are 28% similar to AB055109 of Escherichia coli.","
InterPro
IPR000192
Family
Aminotransferase, class V
PF00266\"[3-366]TAminotran_5
InterPro
IPR010969
Family
Cysteine desulphurase related, unknown function
TIGR01977\"[3-373]Tam_tr_V_EF2568
InterPro
IPR015421
Domain
Pyridoxal phosphate-dependent transferase, major region, subdomain 1
G3DSA:3.40.640.10\"[3-266]TPyrdxlP-dep_Trfase_major_sub1
InterPro
IPR015424
Domain
Pyridoxal phosphate-dependent transferase, major region
SSF53383\"[2-375]TPyrdxlP-dep_Trfase_major
noIPR
unintegrated
unintegrated
PTHR11601\"[2-375]TPTHR11601


","BeTs to 10 clades of COG0520COG name: Selenocysteine lyaseFunctional Class: EThe phylogenetic pattern of COG0520 is --t---vcEbrhujgpolin-Number of proteins in this genome belonging to this COG is 3","No significant hit to the Blocks database.","Residues 7-214 are 32% similar to a (PYRIDOXAL PHOSPHATE AMINOTRANSFERASE TRANSFERASE PROTEIN) protein domain (PD000087) which is seen in O27442_METTH.","","Thu Jun 14 12:11:50 MDT 2001","","Thu Jun 14 12:11:50 MDT 2001","Thu Jun 14 12:11:50 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:11:50 MDT 2001","Thu Jun 14 12:11:50 MDT 2001","","Tue Jun 26 10:23:19 MDT 2001","Fri Jun 8 16:25:21 MDT 2001","Tue Jun 26 10:23:19 MDT 2001","Fri Mar 16 08:18:35 MST 2001","","Tue Jun 26 10:23:19 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1526 shows 27% similarity to PG0663, a possible nifS-like aminotransferase.","Fri Mar 16 08:18:35 MST 2001","Fri Mar 16 08:18:35 MST 2001","-46% similar to PDB:1I29 CRYSTAL STRUCTURE OF CSDB COMPLEXED WITH L-PROPARGYLGLYCINE (E_value = 2.0E_26);-46% similar to PDB:1JF9 Crystal Structure of selenocysteine lyase (E_value = 2.0E_26);-46% similar to PDB:1KMJ E. coli NifS/CsdB protein at 2.0A with the cysteine persulfide intermediate (residue CSS). (E_value = 2.0E_26);-46% similar to PDB:1KMK E. coli NifS/CsdB protein at 2.20A with the cysteine perselenide intermediate (residue CSZ). (E_value = 2.0E_26);-46% similar to PDB:1C0N CSDB PROTEIN, NIFS HOMOLOGUE (E_value = 1.7E_25);","","","Residues 12 to 366 (E-value = 3.8e-08) place PG1526 in the Aminotran_5 family which is described as Aminotransferase class-V (PF00266)","Tue Jun 26 10:23:19 MDT 2001","34541375","","","Mihara,H., Kurihara,T., Yoshimura,T., Soda,K. and Esaki,N. Cysteine sulfinate desulfinase, a NIFS-like protein of Escherichia coli with selenocysteine lyase and cysteine desulfurase activities. Gene cloning, purification, and characterization of a novel pyridoxal enzyme. J. Biol. Chem. 272 (36), 22417-22424 (1997). PubMed: 9278392. Lacourciere,G.M., Mihara,H., Kurihara,T., Esaki,N. and Stadtman,T.C. Escherichia coli NifS-like proteins provide selenium in the pathway for the biosynthesis of selenophosphate. J. Biol. Chem. 275 (31), 23769-23773 (2000). PubMed: 10829016.","","Thu Jun 7 10:25:55 MDT 2001","1","","","PG1751" "PG1527","1838758","1839801","1044","ATGAACCGATCTTCCTTCGATCTACTCTCTACGGTCGAGTACGGTGGCTGTTCGGCCAAACTGGATCCGGCCAAACTGAGCGAACTCCTGCACGATATACCCTTGCCTGTAGATAGCCGTATCATGGTGGATGTGAGCACGCATGACGATGCCGGTGTGTACCGGCTCAACGACGATACTGCCCTGATCGTAACCACGGATTTCTTCCCGCCGGTTTGCTCCGATCCTTATACCTTCGGTCGCATAGCTGCTGCCAATGCTCTCTCGGATGTGTATGCCATGGGAGGGCGACCGCTGTTGGTACTCAATCTGACCATGTTCCCCTCCGAAGGGATTCCCGTAGAGGTCTTGGCGGATATTCTCCGTGGAGGACAGCAGACGATAGACGAGAGTGGTGCCTTTACGATGGGAGGGCATACGATAGACGATCCCATACCTAAGTACGGACTGGCCGTTACAGGCATAGTGCATCCGGAGCATCTGGTCACAAATGCCGGCGTACGTGCAGGGCAATGCCTCGTCCTAACCAAACCGCTGGGAATAGGCGTAGCGATGGCTGCCCACCGTTTGGGGCTTATCGGCAGTGAAGTTTATGAGGCTGCCATCGGGCAGATGTGCCTGCTCAATAGAGCAGGGGCGGAGTTGATGCAGAAATACGGGATAAGGGGTGCCACCGATATTACGGGTTTCGGTTTGCTCGGACATGCCAAGGGGCTGGCAGAGGCTTCAGACGTTTGCTTGCATATCGACAGCCGATCGGTGCCGGTTTTACCGGAGTGCCTCAGCCTGCTAAGGGACGGCTGCATACCAGGTGCTGCCTTCCGTAATCTTCGCTTTGTAGGGGATATGCTTCGGGCAGATTGTCCCACAGAGTACAAAATGCTTTTGGCCGATGCACAGACATCGGGCGGATTGCTGATGGCTGTCGATGCCGATCGGGCGGAAGATCTCGTGGCGGATCTCCATCGGACAGGTCTGCATCCTTTTGCTGCCATTATCGGTTATGCTACCGATGCGGAGGATGCCGCAAAACTGATCGTAACT","4.70","-15.96","36790","MNRSSFDLLSTVEYGGCSAKLDPAKLSELLHDIPLPVDSRIMVDVSTHDDAGVYRLNDDTALIVTTDFFPPVCSDPYTFGRIAAANALSDVYAMGGRPLLVLNLTMFPSEGIPVEVLADILRGGQQTIDESGAFTMGGHTIDDPIPKYGLAVTGIVHPEHLVTNAGVRAGQCLVLTKPLGIGVAMAAHRLGLIGSEVYEAAIGQMCLLNRAGAELMQKYGIRGATDITGFGLLGHAKGLAEASDVCLHIDSRSVPVLPECLSLLRDGCIPGAAFRNLRFVGDMLRADCPTEYKMLLADAQTSGGLLMAVDADRAEDLVADLHRTGLHPFAAIIGYATDAEDAAKLIVT","1838668 1839801","TIGR ID: PG1753","selenophosphate synthetase","Cytoplasm","Residues 18-347 have 40% similarity to AJ245960,E. acidaminophilum selenophosphate synthetase.Residues 8-334 have 41% similarity to AB050935, P. ochraceae selenide.Residues 16-318 have 42% similarity to AE006117, P. multocida SelD.","
InterPro
IPR000728
Domain
AIR synthase related protein
PF00586\"[12-157]TAIRS
InterPro
IPR004536
Family
Selenide water dikinase
PIRSF036407\"[1-347]TSelenphspht_syn
TIGR00476\"[1-336]TselD
InterPro
IPR010918
Domain
AIR synthase related protein, C-terminal
PF02769\"[168-346]TAIRS_C
noIPR
unintegrated
unintegrated
G3DSA:3.30.1330.10\"[19-160]TG3DSA:3.30.1330.10
PTHR10256\"[1-277]T\"[294-346]TPTHR10256
SSF55326\"[5-162]TSSF55326
SSF56042\"[163-348]TSSF56042


","BeTs to 3 clades of COG0709COG name: Selenophosphate synthaseFunctional Class: EThe phylogenetic pattern of COG0709 is -m---q--e--h---------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 49-138 are 47% similar to a (PROTEIN LIGASE SYNTHETASE) protein domain (PD000644) which is seen in SELD_HAEIN.Residues 149-314 are 33% similar to a (SELENIDE ATER DIKINASE SELENOPHOSPHATE) protein domain (PD011247) which is seen in SELD_DROME.Residues 225-326 are 36% similar to a (SELENIDE ATER DIKINASE SELENOPHOSPHATE) protein domain (PD015938) which is seen in SELD_ECOLI.Residues 141-209 are 42% similar to a (SELENIDE ATER DIKINASE SELENOPHOSPHATE) protein domain (PD022106) which is seen in SELD_HAEIN.","","Thu Jun 14 12:12:09 MDT 2001","","Thu Jun 14 12:12:09 MDT 2001","Thu Jun 14 12:12:09 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:12:09 MDT 2001","Thu Jun 14 12:12:09 MDT 2001","","","Thu Mar 1 15:43:33 MST 2001","Tue Jun 26 10:19:42 MDT 2001","Thu Mar 1 15:43:33 MST 2001","","Tue Jun 26 10:19:42 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 15:43:33 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 12 to 157 (E-value = 2.2e-16) place PG1527 in the AIRS family which is described as AIR synthase related protein, N-terminal domain (PF00586)Residues 168 to 346 (E-value = 5.4e-16) place PG1527 in the AIRS_C family which is described as AIR synthase related protein, C-terminal domain (PF02769)","Tue Jun 26 10:19:42 MDT 2001","34541377","","","","","","1","","","PG1753" "PG1528","1839822","1842344","2523","ATGAAAAAATCATTACTCATGCTTTTGCTCTCTGCTGCGACTCTGTCCTCCATCGAGGCACAGACGATACAGCAGATGAAGGCCGGAGGCCCGTGGCCGGTACGTGCTGCTTTTAAGACCGATACCGTGGGGATGAACGGCTCCAAGTATAATCCTGCCGATTTGCTGCGTCAGGCTTACGATGCGACGGACAAAGATCTGCGCAACGTGTCGGCTGACAAGGACGGACGCATCGCCGGAAGAAAAGCCGGATCCAAAGCAGAACGCTCGGAAATGGCAGTCTATTCCTTTGCCCTCACGGCAGAACATTTCGCAAAAGGAGATATAGAGGTATTCGGACAGGGGCGAATGTCTCTTTGGTTGGACGACAAGCAGATAGGGATAGCCGATAGTCCGAATTCCAAGGGCGACACAACGCTGCGTTTCTCTGCATCGCTCTCGCTGGTTCCAGGCACACATCATTTGCTGCTCAAGAGCTTGCTTCTCGAAGGCGATACCACTGCTACGGATGTGCGCGTAGTCCTCAAGCCGAAGACCGCTCGCGATTCGTCGGCTCTCTATCCCAACTATACGGGCAAGGAGCGGCTGAGCCTCAAGCACATGATGAGCGGCACATTTCTATCGGGAGGGAGTCTCTCTCCAACGGGCAAGTATGTACTTACTTCTTATCGGGTAAGCAGGGATAATAAGCCTGCTGTGACCTATAACCAGCTGCGCGATGCCAAAGGAAATATCCTGCTCAATCTGAACGAAAAAGAGGCCCTTGGTTGGATGCCGCATGAAGATATGCTGATGGTGATTCGCAAGGAAGGAAATGCGAAGCGTTTGGTGGCTTTCGATCCGATGGGGAAAGGTGAAAAAACCTTGGTGTCCAATCTACCCGAATCGCAGTTCAGGATGTCGCCCGATGCACGCTATTATCTTTTCTACAAACAAGAGAAAGGCCCCGGAAAAGATCCTCTCTTTATCCGTCATCTGGATCCGGACGACAGACAGTCGGATTGGCGGGATCGTTCGCAGATCTATCTGTTGAATGCCGAGAGCGGTGTGTACGGTCCGCTGACATTCGGCTATTCTACCACCTATATATATGATATTGCACCGGATAGTAAGCGTGCTCTGATCGGTACGCTCTCCACGGACTGGACGCGCCGTCCTTTCCGCTTTGCCACTATCATGGAGTACAATATGGAGACGGGCAAGGCGGATACGCTTATCACTCGCGATCCTTCCATCGACGCAATCCAGTATACACCCGACGGCAAACATCTGATCGTAATGGGTTCGGCAGATGCTTTCGGCAATATAGGACTGAACCTGAAATCGGGAGTCACTCCCAATTCTTACGACAAGCAATTCTTCCTGTTCGATCTCTCCACACGGAAAGCAACAGCCTTGACCAAGAATTTCAACCCCAGTGTATCGGCAGGGAGATTCGACAGAAAAAACAACTACTATTACTTCAGGGCTGAAAACGGATCGCGCAAGCAGCTCTATCGGTTGGATCTGAAAACCCTTGAGATCAGTCAGATTCAGACCGGAGAGGATGTAGTACAATGGTTCGGTGTGGCAGCTGATAATGGTGCTGTCTGGTACAGCGGCCAGAGTGCCAACAATGCTGACAGACTCTATCGGCTCGATGGGACCAAAGGAAAACTCGTATGGGATCTGTCCGCCGAGAAGTTGGCCAATATCGATTTCACACCGGCACGCGACTGGAACTATACGGCTCCGGATGGCACAGTCGTAGAGGGTTGGTACTACCTGCCTCCGCAATTCGATCCTTCCAAGAAATATCCTATGCTGGTCTATTACTATGGAGGAACCAGCCCGATCAATAGGACACTGGAAGGACACTACTCGCTGGCGATGTATGCTGCTCAGGGCTACGTAGTCTATACGCTCAATCCCAGCGGTACTACCGGCTATGGACAGGAGTATGCAGCTCGTCACGTCAATGCCTGGGGCGATCGGACAGCCGATGAGATCATCGGGGCAACAAAAGAGTTTATCCGCACGCATAGCTTTGTCAATGGCAAGAAGGTCGGTTGCTTCGGAGCCAGTTATGGAGGCTTCATGACACAGTATCTTCAGACGAAGACCGATATTTTTGCCGCAGCAGTCAGCCATGCGGGTATCAGCTCGATCAGCAACTATTGGGGGAGCGGATATTGGGGAATGGGTTACAGCACTGTGGCCAGTACCGACAGCTATCCTTGGAACAATCCGGATCTGTATGCCGGACACAGTCCTCTCTTCAGGGCAGACAAGATCCATACTCCGCTCTTGCTTCTGCATGGCTCTGTGGATACGAATGTGCCTACGGCAGAGAGTGTGAATCTGTACAATGCTCTGAAGATACTCGGACGCGAGGTAGAGTTTATCGAATTTACCGAGCAGGATCATTTCATCCTCGAACCGGAGCGACGCATTCGCTGGACGAACAGTATCTGTGCTTGGTTTGCCCGTTGGCTGCAGGACGATCCCACCTGGTGGAACGAACTCTATCCTCCTGTGAATCTC","9.10","7.58","94234","MKKSLLMLLLSAATLSSIEAQTIQQMKAGGPWPVRAAFKTDTVGMNGSKYNPADLLRQAYDATDKDLRNVSADKDGRIAGRKAGSKAERSEMAVYSFALTAEHFAKGDIEVFGQGRMSLWLDDKQIGIADSPNSKGDTTLRFSASLSLVPGTHHLLLKSLLLEGDTTATDVRVVLKPKTARDSSALYPNYTGKERLSLKHMMSGTFLSGGSLSPTGKYVLTSYRVSRDNKPAVTYNQLRDAKGNILLNLNEKEALGWMPHEDMLMVIRKEGNAKRLVAFDPMGKGEKTLVSNLPESQFRMSPDARYYLFYKQEKGPGKDPLFIRHLDPDDRQSDWRDRSQIYLLNAESGVYGPLTFGYSTTYIYDIAPDSKRALIGTLSTDWTRRPFRFATIMEYNMETGKADTLITRDPSIDAIQYTPDGKHLIVMGSADAFGNIGLNLKSGVTPNSYDKQFFLFDLSTRKATALTKNFNPSVSAGRFDRKNNYYYFRAENGSRKQLYRLDLKTLEISQIQTGEDVVQWFGVAADNGAVWYSGQSANNADRLYRLDGTKGKLVWDLSAEKLANIDFTPARDWNYTAPDGTVVEGWYYLPPQFDPSKKYPMLVYYYGGTSPINRTLEGHYSLAMYAAQGYVVYTLNPSGTTGYGQEYAARHVNAWGDRTADEIIGATKEFIRTHSFVNGKKVGCFGASYGGFMTQYLQTKTDIFAAAVSHAGISSISNYWGSGYWGMGYSTVASTDSYPWNNPDLYAGHSPLFRADKIHTPLLLLHGSVDTNVPTAESVNLYNALKILGREVEFIEFTEQDHFILEPERRIRWTNSICAWFARWLQDDPTWWNELYPPVNL","1839822 1842344","TIGR ID: PG1754","probable acylaminoacyl peptidase; alanyl dipeptidyl peptidase","Outer membrane, Periplasm, Extracellular","Residues 482-826 have 29% simlarity to AJ248288, P. abyssi acylaminoacyl-peptidase.Residues 482-826 have 28% similarity to AP000003, P. horikoshii 642aa long hypothetical protein.Residues 405-825 have 23% similarity to AE004038, X. fastidiosa alanyl dipeptidyl peptidase.This sequence is similar to BT1838.","
InterPro
IPR001375
Domain
Peptidase S9, prolyl oligopeptidase active site region
PF00326\"[616-828]TPeptidase_S9
noIPR
unintegrated
unintegrated
G3DSA:2.120.10.30\"[340-569]TG3DSA:2.120.10.30
G3DSA:3.40.50.1820\"[568-825]TG3DSA:3.40.50.1820
PTHR11731\"[190-837]TPTHR11731
PTHR11731:SF7\"[190-837]TPTHR11731:SF7
SSF53474\"[540-839]TSSF53474
SSF69322\"[247-578]TSSF69322


","BeTs to 4 clades of COG1506COG name: Dipeptidyl aminopeptidases/acylaminoacyl-peptidasesFunctional Class: EThe phylogenetic pattern of COG1506 is ---KY--c-b-----------Number of proteins in this genome belonging to this COG is 5","***** PF00930 (Dipeptidyl peptidase IV (DPP IV) N-terminal region) with a combined E-value of 2.8e-07. PF00930G 590-627 PF00930J 761-781","Residues 686-821 are 32% similar to a (DIPEPTIDYL HYDROLASE PROTEIN IV PEPTIDASE PROTEASE) protein domain (PD003048) which is seen in O32120_BACSU.Residues 482-683 are 25% similar to a (DIPEPTIDYL HYDROLASE IV PROTEIN PEPTIDASE PROTEASE) protein domain (PD001060) which is seen in O58593_PYRHO.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Mar 1 15:53:55 MST 2001","Mon Dec 8 16:26:08 2003","Thu Mar 1 15:53:55 MST 2001","Thu Mar 1 15:53:55 MST 2001","Thu Mar 1 15:53:55 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 194-826 have 23% similarity to PG0652 dipeptidyl peptidase IV.Residues 431-826 have 25% similarity to PG0897, conserved hypothetical protein.","Thu Mar 1 15:53:55 MST 2001","Thu Mar 1 15:53:55 MST 2001","-42% similar to PDB:2D5L Crystal Structure of Prolyl Tripeptidyl Aminopeptidase from Porphyromonas gingivalis (E_value = 2.3E_18);-42% similar to PDB:2DCM The Crystal Structure of S603A Mutated Prolyl Tripeptidyl Aminopeptidase Complexed with Substrate (E_value = 5.0E_18);-40% similar to PDB:1ORV Crystal Structure of Porcine Dipeptidyl Peptidase IV (CD26) (E_value = 1.0E_15);-40% similar to PDB:1ORW Crystal Structure of Porcine Dipeptidyl Peptidase IV (CD26) in Complex with a Peptidomimetic Inhibitor (E_value = 1.0E_15);-40% similar to PDB:2AJ8 Porcine dipeptidyl peptidase IV (CD26) in complex with 7-Benzyl-1,3-dimethyl-8-piperazin-1-yl-3,7-dihydro-purine-2,6-dione (BDPX) (E_value = 1.0E_15);","","","Residues 99 to 615 (E-value = 2.4e-06) place PG1528 in the DPPIV_N family which is described as Dipeptidyl peptidase IV (DPP IV) N-terminal region (PF00930)","Tue May 15 17:20:11 MDT 2001","34541378","","","","","","1","","","PG1754" "PG1529","1843371","1842493","879","ATGAACAAAGAACAATTGCAGCAGATGCGTCAGGCTCCCGGCTTTGTAGGAGCATTGGATCAGAGTGGTGGCTCGACCCCTAAAGCTCTGAAGGCATACGGTATCCAACCCGATGCATATCAGTCCGAAGAGGAGATGTTCGATCTCATTCACCAAATGCGTACTCGGATGATTACTTCTCCGGCTTTCGCTACGGGCAAGATCATCGGTGTGATTCTCTTCGAACGTACCATGCGCGGCAAGATCGAAGGAATGCCTACGGCAGACTTCCTTTGGGAGAAAAGACACATCGTCCCCTTCCTGAAAGTGGACAAAGGGCTTCAGGACGAAGCCAACGGCGTACAGCTGATGAAGCCGTTTCCCGAACTCGGCAAGCTCTGTGAAGAAGCTGTCGGATACCACGTTTTCGGCACCAAGATGCGTAGTGTGATCAAGCAGGCCAACGAGCAGGGTATTCGCGACATCGTAGAGCAGCAATTCCAATGGGGAAAAGAGATTCTTTCTCATGGCTTAGTACCTATCCTCGAACCGGAGGTAGACATCCACTGCCCCGAAAAGGCTAAGGCAGAAGAGATCCTCAAGCGAGAACTGCTGGCACAGTTGGACAAGATGACCGAGCCTGTGATGCTCAAGATTACGATCCCGACAGTGGACAACTTCTACAAGGAAATCATCGAACACCCGATGATGCTGCGCGTAGTAGCCCTTTCGGGTGGTTATTCCCGTGAGCAAGCCAATGAGTTGCTCAGCCGCAACCATGGCGTTATCGCTTCGTTCTCTCGCGCTTTGGTCGAAGGTCTCTCCGCCCGGCAGACCGACGCCGAGTTCAACGCTATGTTGGAAGCGTCTATCGAAGACGTTTATCAGGCTTCCATCAAG","5.80","-5.38","32974","MNKEQLQQMRQAPGFVGALDQSGGSTPKALKAYGIQPDAYQSEEEMFDLIHQMRTRMITSPAFATGKIIGVILFERTMRGKIEGMPTADFLWEKRHIVPFLKVDKGLQDEANGVQLMKPFPELGKLCEEAVGYHVFGTKMRSVIKQANEQGIRDIVEQQFQWGKEILSHGLVPILEPEVDIHCPEKAKAEEILKRELLAQLDKMTEPVMLKITIPTVDNFYKEIIEHPMMLRVVALSGGYSREQANELLSRNHGVIASFSRALVEGLSARQTDAEFNAMLEASIEDVYQASIK","1843371 1842493","TIGR ID: PG1755","fructose-bisphosphate aldolase","Cytoplasm","Residues 2-292 have 59% similarity to D90914,Synechocystis sp fructose-bisphosphate aldolase.Residues 1-292 have 55% similarity to X71729,S. carnosus fructose-bisphosphate aldolase.Residues 53-179 have 33% similarity to AL161565, A. thaliana fructose-bisphosphate aldolase.","
InterPro
IPR013785
Domain
Aldolase-type TIM barrel
G3DSA:3.20.20.70\"[4-263]TAldolase_TIM
noIPR
unintegrated
unintegrated
SSF51569\"[1-293]TSSF51569


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 14-277 are 59% similar to a (ALDOLASE FRUCTOSE-BISPHOSPHATE LYASE SCHIFF BASE) protein domain (PD001128) which is seen in ALF1_SYNY3.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Mar 1 16:02:22 MST 2001","Thu Mar 1 16:02:22 MST 2001","Thu Mar 1 16:02:22 MST 2001","","Thu Mar 1 16:02:22 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 16:02:22 MST 2001","-100% similar to PDB:2IQT Crystal Structure of Fructose-Bisphosphate Aldolase, Class I from Porphyromonas gingivalis (E_value = 2.7E_166);","","","No significant hits to the Pfam 11.0 database","Tue May 15 17:24:54 MDT 2001","34541379","","","","","","1","","","PG1755" "PG1530","1845055","1844027","1029","ATGAAAAAGTTATTCTCTTTGAGTGCGGTCATCGTACTCTTAATTTCCTTGCATTCTTGCGCGCCTCGCATCATCACCGAGCTGAACAAACAGTACCCTCCTTTGCCCGAGGGAACACCTATTGCGGTCTACGAACTCGAAAACGGTAAGCGTCCCCCTTCGGAGGCTGAGCTGGTAGGGAAAGTGAGGATCGCCGAATCCGGTCTATCCCGGAGTCTCTCCTACTCGGAGGCCGTGCAGATTGCTCGCGAAGAAACCAGAAAAAGCGGTGCCAATATCCTGTACGTGATCAATCACCAACGACCCTCTATCTTCGGCAGCTCCATGCATCAGATAGGCGGGCTTATGCTCTTGTCAGATTCTGTCGTGAGGAACGAGGGAGAAGGTTATCCCGACTCGCCCCTGTACGATTCGGGTCAAAGGGGGAAAATCGGCTCTCGGATCAAGGCTCCCGTACACGACCTCTCGCTCCATTTCGGCCCCTCTATCATCACGAATCGGACAAAAGGGCTGTCTTATTCGGAGCAGCAGCTGGAGAAAAAGCTAAGCAACGGACTTTCGTTCGTACTCCAATATAAATGTCACCCGAAAGGGAACCTCTACGGATTCGGTCTGATCGCCTCTCGATATGAAGCCGACATCACTAAGAAAATCGAATACCAGGGTATCGGATTCGCCAATCGATTGGACTATATCGCTCCCTTATTCAGCATGAGTACTGCTCTTTCGGAGCGGTGGTTGCTTGGGATAAGTTTCGGCTTAGGTTATTTGGGCTTCAAACAAACGCTGACCGACATATCCGACCCGAAGAGGGAAGGTTACTTCTCCGGCAGCACAGTCGGAGCCAATACGGCACTCAACGTAGGATACAAGCTGAACAAACATTTAGGCATCGGGGGAGAGATCATGATGGTCGGTGGCGTTTTCCATCCGGATAACATAAAGATGACGAACCTATCAGTTCCTAAGCCCAAAGAAAAGATGGGAGCCAATCGGTTCGACTTCACTATCGGTTTGCACGTTTACCTG","10.10","11.08","37705","MKKLFSLSAVIVLLISLHSCAPRIITELNKQYPPLPEGTPIAVYELENGKRPPSEAELVGKVRIAESGLSRSLSYSEAVQIAREETRKSGANILYVINHQRPSIFGSSMHQIGGLMLLSDSVVRNEGEGYPDSPLYDSGQRGKIGSRIKAPVHDLSLHFGPSIITNRTKGLSYSEQQLEKKLSNGLSFVLQYKCHPKGNLYGFGLIASRYEADITKKIEYQGIGFANRLDYIAPLFSMSTALSERWLLGISFGLGYLGFKQTLTDISDPKREGYFSGSTVGANTALNVGYKLNKHLGIGGEIMMVGGVFHPDNIKMTNLSVPKPKEKMGANRFDFTIGLHVYL","1845055 1844027","TIGR ID: PG1757","hypothetical protein","Outer membrane, Cytoplasm","No hits in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-22]?signal-peptide
tmhmm\"[5-25]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon Dec 18 10:41:40 MST 2000","Mon Dec 18 10:42:51 MST 2000","Mon Dec 18 10:41:40 MST 2000","","","yes","Fri Feb 20 15:41:32 MST 1998","PG1530 is similar to PG0027, a hypothetical protein. Residues 79-253 are 97% similar to residues 1-175 of PG0027.","Mon Jun 4 17:35:05 MDT 2001","Mon Jun 4 17:35:05 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jun 4 17:35:05 MDT 2001","34541380","","","","","","1","","","PG1757" "PG1530.1","1845309","1845055","255","GTGTTAAACAATAACTACTTCCGCTACTACGGTCGTAGATCTGGCCGCAAAGATAATATAATTCCCTATACCACAGCGCGAATCTGTTTCTTCGCTCTTGTTATAACGATGCCGTTGGACGTACGGATCTACATTGGGCCAAGCATTCAAGGAAAGGTGAACTCGCCCTTCTTTGCATTTTTGGGTCCAAAAACAAGCCAAGAAAGCCGAGATTCTATTTACTTTTGTGCACTCTTTGAACGAAAATACAGCTTA","","","9900","VLNNNYFRYYGRRSGRKDNIIPYTTARICFFALVITMPLDVRIYIGPSIQGKVNSPFFAFLGPKTSQESRDSIYFCALFERKYSL","","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
noIPR
unintegrated
unintegrated
tmhmm\"[21-41]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG1531","1845328","1845594","267","ATGTATTTGGATTCAGCTAAAAAAGCAGAACTCTTCGAGAAGTATGGCAAGTCAGTGAAGGACACGGGTAGCCCCGAAAGTCAAATCGCTTTATTCACATTTCGCATCGCGCATTTGACTGAGCACTTGCGTCAGAACAAGAAAGACTTTGCCACGGAACGTTCTTTGAAGATGCTGGTAGGTAAGCGTCGTCGTATGCTCGACTACTTGATCAAGGTAGATATCGAGCGTTACCGTGCCATCATCAAGGAACTCGGTATCCGTCGC","10.90","9.47","10544","MYLDSAKKAELFEKYGKSVKDTGSPESQIALFTFRIAHLTEHLRQNKKDFATERSLKMLVGKRRRMLDYLIKVDIERYRAIIKELGIRR","1845328 1845594","In Escherichia coli, this protein binds to 16S ribosomal RNA and functions at early steps in ribosome assembly.TIGR ID: PG1758","30S ribosomal protein S15","Cytoplasm","Numerous significant hits to 30S ribosomal protein S15 using gapped BLAST from, e.g., Mycobacterium leprae (gi: 3122793), Mycobacterium tuberculosis (gi: 3122795), Streptomyces coelicolor (gi: 6226076), Bacillus stearothermophilus (gi: 3220005), among others. This protein is similar to CT843, a predicted 30S ribosomal protein S15 from Chlamydia trachomatis.","
InterPro
IPR000589
Family
Ribosomal protein S15
PF00312\"[6-88]TRibosomal_S15
PS00362\"[39-69]TRIBOSOMAL_S15
InterPro
IPR005290
Family
Ribosomal protein S15, bacterial chloroplast and mitochondrial type
PD157043\"[10-88]TRibosomal_S15_b
PTHR23321:SF10\"[4-88]TRibosom_S15_bac
TIGR00952\"[4-89]TS15_bact
InterPro
IPR009068
Domain
S15/NS1, RNA-binding
G3DSA:1.10.287.10\"[2-89]TS15_NS1_RNA_bd
SSF47060\"[2-89]TS15/NS1_bind
noIPR
unintegrated
unintegrated
PTHR23321\"[4-88]TPTHR23321


","BeTs to 16 clades of COG0184COG name: Ribosomal protein S15P/S13EFunctional Class:  JThe phylogenetic pattern of COG0184 is amtkYqvcebrHujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB000589 (Ribosomal protein S15) with a combined E-value of 1.4e-21. IPB000589 23-71","Residues 1-52 are 59% similar to a (PROTEIN RIBOSOMAL S15 30S) protein domain (PD157043) which is seen in RS15_CAMJE.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Mon Apr 10 13:41:50 MDT 2000","Thu Mar 30 16:59:27 MST 2000","Mon Apr 10 13:41:50 MDT 2000","Mon Apr 10 13:41:50 MDT 2000","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Mon Apr 10 13:41:50 MDT 2000","","-68% similar to PDB:1A32 RIBOSOMAL PROTEIN S15 FROM BACILLUS STEAROTHERMOPHILUS (E_value = 4.6E_18);-70% similar to PDB:1EG0 FITTING OF COMPONENTS WITH KNOWN STRUCTURE INTO AN 11.5 A CRYO-EM MAP OF THE E.COLI 70S RIBOSOME (E_value = 1.3E_17);-70% similar to PDB:1FJG STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH THE ANTIBIOTICS STREPTOMYCIN, SPECTINOMYCIN, AND PAROMOMYCIN (E_value = 1.3E_17);-70% similar to PDB:1GIX Crystal structure of the ribosome at 5.5 A resolution. This file, 1GIX, contains the 30S ribosome subunit, three tRNA, and mRNA molecules. 50S ribosome subunit is in the file 1GIY (E_value = 1.3E_17);-70% similar to PDB:1HNW STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH TETRACYCLINE (E_value = 1.3E_17);","","","Residues 6 to 88 (E-value = 7.3e-28) place PG1531 in the Ribosomal_S15 family which is described as Ribosomal protein S15 (PF00312)","","34541381","","","Tsiboli,P., Herfurth,E. and Choli,T. 1994. Purification and characterization of the 30S ribosomal proteins from the bacterium Thermus thermophilus. Eur. J. Biochem. 226 (1), 169-177. PubMed: 7957245.Takata,R., Mukai,T., Aoyagi,M. and Hori,K. 1984. Nucleotide sequence of the gene for Escherichia coli ribosomal protein S15 (rpsO). Mol. Gen. Genet. 197(2): 225-229. PubMed: 6394953.Higo,K., Otaka,E. and Osawa,S. 1982. Purification and characterization of 30S ribosomal proteins from Bacillus subtilis: correlation to Escherichia coli 30S proteins. Mol. Gen. Genet. 185 (2), 239-244. PubMed: 6806564.","","Mon Apr 10 13:41:50 MDT 2000","1","","","PG1758" "PG1532","1845713","1846657","945","ATGATCAGAACGATACTTTCACGATATGTATCCTCGAACTTTTGGAGTCGGGGAGCTACCTTTTTTTTCACGATTTTCCCGGCCTTCATCCTCGCCGCTACTGCTTTGCCGGCTTGTGGAGGGGGTACTGCTTCAGGCTCCGATCGTACGCTGGCTGTGACCATCGAGCCACAGAAATACTTCATCGAGTCCATTGCGGATAAGTCGGTGCAGGTGGTGGCATTGGTACCGGCCGGCAGCAATCCGGAGGAATACGACCCTTCGCCTACCGTGATGAAGCGTTTGTCCGAAGCAGATGCCTACTTCTATATAGGAGGACTGGGGTTCGAGCAAAGAAATCTCGCTGCCATTCGGGACAATAACCCTAAGCTCCCTCTTTTCGAAATGGGCAAAGCCTTGGCGGATGCCGGAAGTGCAGATCTCCACGGCTCCTGCACAGATCATTCTCATACAGACCTGCATGCCCATGATCCGCACTATTGGAGCAGTGTGGTAGGGGCAAAGGCACTCAGTCGTGCTGCATACGACGCGCTTGTGGAGCTTTATCCGAACGAGAAAGACAAATGGGACAAAGGGCACGACCGTCTCAACGGACGTATCGACAGCGTGAAGAGACTCGTCGATACCATGTTTGCCAATGGCAAAGCAGACAAAGCCTTCGTCATATATCACCCATCGCTCAGCTTTTTCGCCCAAGAGTTCGGCCTGCGGCAGATCGTCATAGAGGAAGATGGGAAAGAGCCTACGGCTGCCCACCTTCGTCGTGTGATCGATCAGGCACGTGCCGATGGTGTCAGAATCGTATTTATCCAACCCGAATTTGAAACGCGTCAGGCGGAGGACATCGCACGCGAGATCGGTGCTCGTCCGGTAAGGATCAATCCTCTGCGCAGCTCGTGGGAGGAGGAAATTTTACATATTGCTCGCGCTTTGGCTCATGAACGG","6.40","-3.43","34972","MIRTILSRYVSSNFWSRGATFFFTIFPAFILAATALPACGGGTASGSDRTLAVTIEPQKYFIESIADKSVQVVALVPAGSNPEEYDPSPTVMKRLSEADAYFYIGGLGFEQRNLAAIRDNNPKLPLFEMGKALADAGSADLHGSCTDHSHTDLHAHDPHYWSSVVGAKALSRAAYDALVELYPNEKDKWDKGHDRLNGRIDSVKRLVDTMFANGKADKAFVIYHPSLSFFAQEFGLRQIVIEEDGKEPTAAHLRRVIDQARADGVRIVFIQPEFETRQAEDIAREIGARPVRINPLRSSWEEEILHIARALAHER","1845695 1846657","TIGR ID: PG1759See ABC Transporters Analysis.
","ABC transporter (SBP domain); adhesin","Periplasm, Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 50-317 are 34% similar to gb|AAB85110.1| adhesion protein of Methanothermobacter thermautotrophicus, residues 53-319 are 30% similar to emb|CAB72627.1| periplasmic solute binding protein for ABC transport system of Campylobacter jejuni, residues 57-319 are 29% similar to dbj|BAA17110.1| adhesion protein of Synechocystis sp.","
InterPro
IPR006127
Family
Periplasmic solute binding protein
PF01297\"[22-312]TSBP_bac_9
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.1980\"[47-212]T\"[216-311]TG3DSA:3.40.50.1980
SSF53807\"[47-314]TSSF53807


","BeTs to 11 clades of COG0803COG name: Zn-binding (lipo)protein of the ABC-type Zn transport system (surface adhesin A)Functional Class: PThe phylogenetic pattern of COG0803 is a-tK-QvCeBrH-----LINxNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 45-133 are 43% similar to a (PROTEIN PRECURSOR SIGNAL LIPOPROTEIN) protein domain (PD002751) which is seen in O26704_METTH.Residues 157-311 are 33% similar to a (PROTEIN PRECURSOR SIGNAL LIPOPROTEIN) protein domain (PD002761) which is seen in O26704_METTH.","","Thu Jun 14 12:12:26 MDT 2001","","Thu Jun 14 12:12:26 MDT 2001","Thu Jun 14 12:12:26 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:12:26 MDT 2001","Thu Jun 14 12:12:26 MDT 2001","","Fri Jun 15 22:20:52 MDT 2001","Sat Jun 2 16:11:07 MDT 2001","Tue Mar 20 17:00:10 MST 2001","Tue Mar 20 17:00:10 MST 2001","","Fri Jun 15 22:20:52 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 20 17:00:10 MST 2001","-52% similar to PDB:1PQ4 Crystal structure of ZnuA (E_value = 7.0E_35);-44% similar to PDB:2O1E Crystal Structure of the Metal-dependent Lipoprotein YcdH from Bacillus subtilis, Northeast Structural Genomics Target SR583 (E_value = 1.6E_18);-40% similar to PDB:2OGW Structure of ABC type zinc transporter from E. coli (E_value = 7.8E_18);-41% similar to PDB:1PSZ PNEUMOCOCCAL SURFACE ANTIGEN PSAA (E_value = 7.8E_10);","","","Residues 22 to 312 (E-value = 3.1e-29) place PG1532 in the SBP_bac_9 family which is described as Periplasmic solute binding protein family (PF01297)","Fri Jun 15 22:20:52 MDT 2001","34541382","","","","","","1","","","PG1759" "PG1533","1846650","1847276","627","ATGAACGGTAGCTTATTGCTCAGCCTGAAGTCGGCCTCGTTCGGCTATGGACCGAAAAATGTATTCAAGGACTATTCGCTCGATATCGTTCGTGGCGAATTTCTCGGTATCGTAGGACGCAATGGTGGGGGAAAGTCCACCCTCGTAAAGGCAATAATCGGCCTGCTGCCACTGCGATCGGGGAGTCTTACGTTCTACAATCGGGAGGGAATGCCGTGTGTAAGGCCTTCGATCGGTTATCTGCCTCAGCTCAATCGTATCGACAGAGCTTTTCCTATTCGCGTGGAGGAGGTCATTCGATCCGGTTTGCTTGGGGAGGGTAATCGAGGTTCGCACAAAGAACTTCTGGCCGGTGCTGCCTCCGATCTCCGGATAACCGATCTGCTCAAACGCCCCATATCGGATTTGAGCGGCGGACAGCTACAGCGTGTCCTTTTGGCCAGAGCTATCGTAAGCTGTCCCGAACTCCTCGTACTCGATGAACCGAACAGCTATTTGGACGAATCGGCTGAAGCACTCGTGCAACAGACTGTATCCCAAAGGCACAAAGACGGTGCAACCATCTTATTGATTTCACATGACAGAGAAAGCATTGGACAGCAAGCAGACAGGATATTGTCTCTCGAC","8.70","2.63","22678","MNGSLLLSLKSASFGYGPKNVFKDYSLDIVRGEFLGIVGRNGGGKSTLVKAIIGLLPLRSGSLTFYNREGMPCVRPSIGYLPQLNRIDRAFPIRVEEVIRSGLLGEGNRGSHKELLAGAASDLRITDLLKRPISDLSGGQLQRVLLARAIVSCPELLVLDEPNSYLDESAEALVQQTVSQRHKDGATILLISHDRESIGQQADRILSLD","1846632 1847276","TIGR ID: PG1760","ABC transporter/NBD protein for possibly Zn/Mn","Inner membrane, Cytoplasm","Numerous significant hits to ABC transporter proteins in gapped BLAST; e.g. residues 6-200 are 35% similar to dbj|BAA17111.1| ABC transporter of Synechocystis sp., residues 7-208 are 34% similar to pir||C69992 ABC transporter (ATP-binding protein) homolog of Bacillus subtilis, residues 6-209 are 34% similar to gb|AAD35218.1|AE001698_7 zinc ABC transporter, ATP-binding protein of Thermotoga maritima, residues 6-209 are 37% similar to emb|CAA67569.1| ATP binding protein of Staphylococcus epidermidis, residues 5-205 are 36% similar to dbj|BAB05113.1| ABC transporter (ATP-binding protein) of Bacillus halodurans.","
InterPro
IPR003439
Domain
ABC transporter related
PD000006\"[136-178]TABC_transporter
PF00005\"[32-209]TABC_tran
PS00211\"[136-150]TABC_TRANSPORTER_1
PS50893\"[7-209]TABC_TRANSPORTER_2
InterPro
IPR003593
Domain
AAA+ ATPase, core
SM00382\"[31-208]TAAA
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[3-209]TG3DSA:3.40.50.300
PTHR19222\"[7-209]TPTHR19222
PTHR19222:SF31\"[7-209]TPTHR19222:SF31
SSF52540\"[6-209]TSSF52540


","BeTs to 10 clades of COG1121COG name: ABC-type iron (III) transport system, ATPase componentFunctional Class: PThe phylogenetic pattern of COG1121 is a-tk-qvCeB-H-----LINxNumber of proteins in this genome belonging to this COG is 1","***** IPB001617 (ABC transporters family) with a combined E-value of 3.3e-12. IPB001617A 37-52 IPB001617B 137-148","Residues 23-69 are 46% similar to a (ATP-BINDING TRANSPORT PROTEIN TRANSPORTER ABC) protein domain (PD000005) which is seen in O34338_BACSU.Residues 136-178 are 55% similar to a (ATP-BINDING TRANSPORT PROTEIN TRANSPORTER) protein domain (PD000006) which is seen in Q24809_ENTHI.","","Thu Jun 14 12:12:46 MDT 2001","","Thu Jun 14 12:12:46 MDT 2001","Thu Jun 14 12:12:46 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:12:46 MDT 2001","Thu Jun 14 12:12:46 MDT 2001","","Tue Jun 26 10:16:01 MDT 2001","Sat Jun 2 16:10:12 MDT 2001","Tue Jun 26 10:16:01 MDT 2001","Fri Mar 16 08:34:54 MST 2001","Fri Jun 15 22:18:34 MDT 2001","Fri Jun 15 22:18:34 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1533 is 23-33% similar to the following:PG0233 ABC transporter ATPasePG0254 ABC transporter/ATP-binding proteinPG0566 ABC transporter proteinPG0584 ferric enterobactin transport protein/iron(III) dic... PG0605 ABC transport system component; ATP-binding proteinPG0618 ABC transport component; ATPase componentPG0844 ABC transporterPG0903 ABC transporter ATP binding protein PG0921 oligopeptide ABC transporter PG1048 ABC transporter, ATP-binding proteinPG1049 ABC transporter proteinPG1084 ABC transporter ATP-binding proteinPG1211 ABC transporter (exact function unknown)PG1451 ABC transporter, ATP-binding proteinPG1467 ABC transporter proteinPG1477 ABC transporter ATPasePG1497 ABC transporter protein, MSD-NBD fusion protein PG1917 cell-division ATP-binding proteinPG1923 ABC transporter, ATP-binding proteinPG1929 ABC transporter protein,NBD-NBD fusion protein","Fri Mar 16 08:34:54 MST 2001","Fri Mar 16 08:34:54 MST 2001","-53% similar to PDB:1Q12 Crystal Structure of the ATP-bound E. coli MalK (E_value = 1.0E_19);-53% similar to PDB:1Q1B Crystal structure of E. coli MalK in the nucleotide-free form (E_value = 1.0E_19);-53% similar to PDB:1Q1E The ATPase component of E. coli maltose transporter (MalK) in the nucleotide-free form (E_value = 1.0E_19);-53% similar to PDB:2AWN Crystal structure of the ADP-Mg-bound E. Coli MALK (Crystallized with ATP-Mg) (E_value = 1.0E_19);-53% similar to PDB:2AWO Crystal structure of the ADP-Mg-bound E. Coli MALK (Crystallized with ADP-Mg) (E_value = 1.0E_19);","","","Residues 32 to 209 (E-value = 8.3e-40) place PG1533 in the ABC_tran family which is described as ABC transporter (PF00005)","Fri Jun 15 22:18:34 MDT 2001","34541383","","","","","","1","","","PG1760" "PG1534","1847227","1847799","573","ATGACAGAGAAAGCATTGGACAGCAAGCAGACAGGATATTGTCTCTCGACTGATCATTATCGGATCCGTCGGGCTCTTCCATCCGATTACGACAGCATTCTTGCCCTATGGGAGGATGCCCGGCACACGATGCTTGCTTCCGACAATCCTCAGTGGCAGGGAGCATATCCGGGCGAGACCGAAGCTCAAGAGGATATAGCCCGTGGAGAAGCCTTCCTGTTGGATATAGCGGGTACTCCTTTGGGGGTGATGGCTGTGAATGATCAGATGCCGGCCGAATACGGCTCGTTGCCATGGCAGACCGAAGGGAAAGCCTATACGATACACCGCCTGGGTGTTCATTCCTCTCTGCTCCGCAAGGGGTATGCCGCTGCCATGCTTTTCTCTGCCGAGACGATAGCTCGCGAACAAGGGGGCACTTGCATACGCATAGATACGTATAGCCCCAATACGGCTGCGCAGAGCCTTTTCCGTCGCCTTGGCTACCGGCAGGTTTGCTCTTTCCATATGAAGCAGAAGCCTTTGCCATATATCGCTTTCGAAAAATCGCTCTTAAAGCAGCTCGGAAGTGGG","7.00","0.00","21267","MTEKALDSKQTGYCLSTDHYRIRRALPSDYDSILALWEDARHTMLASDNPQWQGAYPGETEAQEDIARGEAFLLDIAGTPLGVMAVNDQMPAEYGSLPWQTEGKAYTIHRLGVHSSLLRKGYAAAMLFSAETIAREQGGTCIRIDTYSPNTAAQSLFRRLGYRQVCSFHMKQKPLPYIAFEKSLLKQLGSG","1847227 1847799 [Bad Olap 1983 79 9]","TIGR ID: PG1761","possible acetyltransferase","Cytoplasm","Residues 22-184 have 30% similarity to AL139079, C. jejuni putative acetyltransferase.","
InterPro
IPR000182
Domain
GCN5-related N-acetyltransferase
PF00583\"[72-163]TAcetyltransf_1
PS51186\"[20-187]TGNAT
noIPR
unintegrated
unintegrated
G3DSA:3.40.630.30\"[20-165]TG3DSA:3.40.630.30
SSF55729\"[20-184]TSSF55729


","BeTs to 3 clades of COG0454COG name: Predicted acetyltransferasesFunctional Class: RThe phylogenetic pattern of COG0454 is AmTKYqVCEBR-uj----in-Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Fri Jun 15 11:27:01 MDT 2001","Thu Mar 1 16:05:58 MST 2001","Thu Mar 1 16:05:58 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 16:05:58 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 72 to 163 (E-value = 4.9e-13) place PG1534 in the Acetyltransf_1 family which is described as Acetyltransferase (GNAT) family (PF00583)","Tue May 15 17:31:24 MDT 2001","34541384","","","","","","1","","","PG1761" "PG1535","1847721","1847978","258","TTGCTCTTTCCATATGAAGCAGAAGCCTTTGCCATATATCGCTTTCGAAAAATCGCTCTTAAAGCAGCTCGGAAGTGGGTAGGCTGCAGTATCCTTGCTGTGGCTCTTGGTTATAGAGCCACCCAATCATTTGCTGTACCGAGGCAATGTCCCACTGTTTTTGCTGCCGATGACCCGAATCATCGGCTATTTTCTATATATAAAGTGAGAGATAGTGTAAAAAAAAACGTAACTTTGCGCCCTATGAATATGCCTGTA","11.00","9.12","9789","LLFPYEAEAFAIYRFRKIALKAARKWVGCSILAVALGYRATQSFAVPRQCPTVFAADDPNHRLFSIYKVRDSVKKNVTLRPMNMPV","1847721 1847978 [Shorter 1982 79 88]","NO TIGR ID corresponds to this gene.","hypothetical protein","Periplasm, Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG1536","1848131","1850962","2832","ATGGGCGATGTTGCCGGAATGGCCTATCTTGATTCCATGTCGAATGAGAAGGTCTGGTTCGGCTACACGCTGAAAGAAGCTCAAGCCCAGCAAATTGGTCTTGGCCTTGACTTAAAGGGGGGTATGAACGTTATCTTGAAACTTAACGCAAGCGATCTGCTTCGTAACCTCTCTAACAAAAGTTTGGATCCCAACTTCAACAAAGCTCTGGAGAATGCTGCCAAGAGCACGGAGCAATCCGACTTCATCGATATTTTCGTGAAGGAATATCGCAAGCTCGATCCCAACGGTCGCTTGGCCGTTATCTTCGGTTCGGGTGACCTTCGCGACCAGATTACCGCAAAGTCTACGGATGCAGACGTAGTGCGTCTGCTCAAAGAAAAATATAATAGTGCTGTAGAAGCTTCGTTCAATGTGCTCCGTGCTCGTATCGATGCTTTCGGTGTGGTTGCACCTAATTTGCAGCGATTGGAAGGGCAAGGGCGTATCCTTGTCGAACTCCCCGGAGTGAAAGACCCTGAGCGTGTTCGTACCCTTTTGCAACGCAGTGCCAACCTACAGTTCTGGCGTACATACAAATTCGAAGAGGTCAGCGGAGACTTGATCGCTGCCAATGATCGTCTGAGCGAATTGGCTATGAACAACACGGATGCTACCCCGGAAACAGAGCCTGCAACTACTGACTCTGTAGCTGCAACAGCCGATTCTGCTGCTGTACAAGCTGTAGCTGATTCTGCTACTGTAGCACAAAAAGAGGCCAAGGATGCTACTCGTAAAGACGCACTCTTCTCTCTGCTTACTCCCGTGAATCGTGGCGGTGCAGTAGTGGGTGTGGCTCGTCGTGCTAATATGGCTCAGATATCTGAAATGCTCCAGCAAGCTCACGATCTGAAGGTTACACGTGAAGATGTGCTTTTCCTCTGGGGTGCTAAAGCAATCGAAGACCCCGAAACCAAAAAGGAGACCGACCTCTACGAACTCTATGCTATTCGTACCAATCGTACGGGAGATCCTGATTTGGGAGGTGATGTAGTGACTTCCGCCAAGAGTGATATCCAAAATGACTTCGGTCGTTCCGAACCGATCGTTTCGATGACGATGAATGAAGAAGGTGCTCGTAAATGGGCGCGTATCACAAAGGATAACGTGGGACGGGCAATCGCTATCGTTTTGGATGGTGTGGTTTATTCTGCTCCGAACGTGAATGATGAGATCACGGGCGGTCGCTCTCAGATCTCCGGGCACTTCACCGTGGAGGAGGCCGGTGACCTTGCCAACGTACTCAACTCCGGTAAAATGGATGCTACGGTAAGCATCGAACAGGAAAACGTGATTGGTCCTACGCTGGGTGCCGAGTCCATTAAAGCCGGATTCTTGTCGTTCCTGCTCGCTTTGGTTATCCTGATGTGTTACATGTGTCTGGCTTACGGTTTCTTGCCGGGTCTTATCGCAAACGGCGCATTGATTGTAAACAGCTTCTTCACATTGGGCGTATTGGCTTCTTTCCATGCCGTGCTGACCCTCTCGGGTATCGCAGGTTTGGTGCTGACGCTGGGTATGGCTGTGGATGCCAACGTACTTATCTTCGAGCGTATCAAAGAAGAGCTTCGTGCCGGTAAGACTCCGATTCGTGCCGTTACGGATGGTTATGGCAACGCTTTCTCTGCCATCTTCGACTCGAACGTTACGACTATTATTACCGGTATCATCCTATTCCTCTACGGGACGGGGCCGATTCGCGGTTTTGCCACTACGTTGATTATCGGTCTTATCGCTTCTTTCATTACGGCTGTCTTCTTGACTCGTATCGTCTTCGAGAAACTGGCGAAAAAAGGTCGTTTGGATAAGATTACATTCACTACGAGCATTACTCGCAATCTCCTTGTCAATCCCTCATACAACATCTTGGGTAAGCGCAAGACCGGCTTTATCATTCCGGTGATTATCATCGTTTTGGGACTTATAGCTTCATTTACAATCGGTCTCAATAGGGGTATTGAATTCTCCGGAGGACGTAACTACGTAGTTAAATTCGACCAGCCTGTATCTTCCGAAGCCGTTCGTTCGGCCTTGTCTTCTCCCCTGCAGGAAAAGGTATTGGTTACCTCCATCGGTACTGAAGGGACAGAGGTGCGTATATCTACGAACTATAAGATCCAGGAGGAAAGCGAAGAAACTGAAGCAGAGATTACTGACAAATTGTATCAGAGCCTGAAAGGTTTCTACACCCAGCAGCCTACTGCTGATCAGTTCTTGGACAATATCATTAGCTCTCAGAAAGTAAGTCCCAGTATGTCGAGTGACATCACGAGAGGTGCTATTTGGGCTGTGCTGTTATCGATGATCTTCATGGCCATTTATATTCTGATTCGCTTCCGTGACATTTCTTTCTCTGCCGGGGTATTCGTATCTGTGGCCGCTACTACATTCTGCATTATTGCTCTGTATGCGTTGCTGTGGAAGATTCTGCCCTTCACCATGGAGATCGATCAGAACTTCATCGCTGCTATTCTGGCTATCATCGGTTACTCGCTCAATGACACCGTGGTTGTATTTGACCGTATCCGAGAGACGATGAAATTGTACCCCAACAGAGATCGCTATCAGGTGATCAACGATGCCCTTAATTCAACATTGGGTCGAACATTAAATACGTCTTTGACTACGTTTATCGTTATGTTGGTAATCTTCATCTTTGGAGGTGCTACGATGCGTAGTTTCACGTTCTCGATCCTGCTCGGTATCGTTATCGGTACATACTCTACGCTCTTTGTTGCTACACCCCTTGCCTACGAGATCCAAAAGCGCAAGCTCAACAAAGCAGCTAAGAAA","5.70","-4.33","103002","MGDVAGMAYLDSMSNEKVWFGYTLKEAQAQQIGLGLDLKGGMNVILKLNASDLLRNLSNKSLDPNFNKALENAAKSTEQSDFIDIFVKEYRKLDPNGRLAVIFGSGDLRDQITAKSTDADVVRLLKEKYNSAVEASFNVLRARIDAFGVVAPNLQRLEGQGRILVELPGVKDPERVRTLLQRSANLQFWRTYKFEEVSGDLIAANDRLSELAMNNTDATPETEPATTDSVAATADSAAVQAVADSATVAQKEAKDATRKDALFSLLTPVNRGGAVVGVARRANMAQISEMLQQAHDLKVTREDVLFLWGAKAIEDPETKKETDLYELYAIRTNRTGDPDLGGDVVTSAKSDIQNDFGRSEPIVSMTMNEEGARKWARITKDNVGRAIAIVLDGVVYSAPNVNDEITGGRSQISGHFTVEEAGDLANVLNSGKMDATVSIEQENVIGPTLGAESIKAGFLSFLLALVILMCYMCLAYGFLPGLIANGALIVNSFFTLGVLASFHAVLTLSGIAGLVLTLGMAVDANVLIFERIKEELRAGKTPIRAVTDGYGNAFSAIFDSNVTTIITGIILFLYGTGPIRGFATTLIIGLIASFITAVFLTRIVFEKLAKKGRLDKITFTTSITRNLLVNPSYNILGKRKTGFIIPVIIIVLGLIASFTIGLNRGIEFSGGRNYVVKFDQPVSSEAVRSALSSPLQEKVLVTSIGTEGTEVRISTNYKIQEESEETEAEITDKLYQSLKGFYTQQPTADQFLDNIISSQKVSPSMSSDITRGAIWAVLLSMIFMAIYILIRFRDISFSAGVFVSVAATTFCIIALYALLWKILPFTMEIDQNFIAAILAIIGYSLNDTVVVFDRIRETMKLYPNRDRYQVINDALNSTLGRTLNTSLTTFIVMLVIFIFGGATMRSFTFSILLGIVIGTYSTLFVATPLAYEIQKRKLNKAAKK","1848020 1850962","TIGR ID: PG1762","protein translocation membrane protein SECF","Inner membrane, Cytoplasm","Numerous significant hits to protein-export membrane proteins in gapped BLAST; e.g. residues 342-943 are 32% similar to gb|AAF11371.1|AE002022_4 protein-export membrane protein, putative of Deinococcus radiodurans, residues 596-931 are 42% similar to dbj|BAA78559.1| protein-export membrane protein of Prevotella ruminicola, residues 397-940 are 34% similar to emb|CAB14724.1| protein-export membrane protein of Bacillus subtilis.This sequence is similar to BT2835.","
InterPro
IPR003335
Family
SecD/SecF/SecDF export membrane protein
PR01755\"[660-675]T\"[842-860]T\"[874-889]TSECFTRNLCASE
PF02355\"[743-936]TSecD_SecF
PF07549\"[23-54]T\"[657-684]TSec_GG
TIGR00916\"[367-598]T2A0604s01
InterPro
IPR005665
Family
SecF protein
TIGR00966\"[661-926]T3a0501s07
InterPro
IPR005791
Family
SecD export membrane protein
TIGR01129\"[34-605]TsecD
noIPR
unintegrated
unintegrated
SSF82866\"[310-613]T\"[761-940]TSSF82866


","BeTs to 12 clades of COG0342COG name: Preprotein translocase subunits SecDFunctional Class: NThe phylogenetic pattern of COG0342 is -mtk-qvcebrhuj--olinxNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 633-846 are 24% similar to a (PROTEIN MEMBRANE PROTEIN-EXPORT SECF) protein domain (PD002220) which is seen in O32047_BACSU.Residues 338-515 are 41% similar to a (PROTEIN MEMBRANE SECD PROTEIN-EXPORT) protein domain (PD023874) which is seen in Q9ZJ66_BBBBB.Residues 847-919 are 41% similar to a (PROTEIN TRANSMEMBRANE MEMBRANE PUTATIVE TRANSPORT INNER) protein domain (PD000801) which is seen in SECF_HAEIN.Residues 847-929 are 44% similar to a (PROTEIN MEMBRANE PROTEIN-EXPORT SECF) protein domain (PD122005) which is seen in Q55611_SYNY3.Residues 93-188 are 39% similar to a (PROTEIN SECD MEMBRANE PROTEIN-EXPORT) protein domain (PD005230) which is seen in Q9ZFF8_SALCH.","","Thu Jun 14 12:13:03 MDT 2001","","Thu Jun 14 12:13:03 MDT 2001","Thu Jun 14 12:13:03 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:13:03 MDT 2001","Thu Jun 14 12:13:03 MDT 2001","","","Wed Mar 22 14:45:00 MST 2000","Fri Dec 19 10:22:17 2003","Tue Mar 27 17:13:20 MST 2001","","Tue Jun 26 10:09:23 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 27 17:13:20 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 652 to 936 (E-value = 4.9e-65) place PG1536 in the SecD_SecF family which is described as Protein export membrane protein (PF02355)","Tue Jun 26 10:09:23 MDT 2001","161579529","","","","","","1","","","PG1762" "PG1537","1851805","1851095","711","TTGCTTTCGGATATTCTTGGCTTCAAACCGAGTCGGATTGCTTTTTATGAGCTGGCTTTTCGGCATAGTTCGTGCAGTCTGGTCGATGACGAAGGCTACCGACTGAATAACGAACGCTTAGAATTTTTGGGAGACTCCGTTCTTGCCACTGCTATCAGCGGTTATTTATATCGCCAACATCCTCACTGGGATGAAGGGGATATGAGTCAGCGTCGCAGCGCGATTGTCAAAAGACAGATCAACAATGTAGTGGCAAAAAAGCTCAGATTGGATCGTTTTCTGATTGTCCGTGGCGAAATATCTCAGATGAGTTCTGATATTATGGGCAATACACTGGAAGCCCTTATCGGAGCAATCTATCTGGACAAAGGATACCAAGCAGCGGAAAAGTTTGTCCTTACACGCTTCATTCCCGTCTTTCATGAATTGGAAGACAGCCTGACGGATACTACTACGAATTACAAATCCCTTCTACTTGAATGGGCACAGAAGCACCACTTGAATCTGGAATTTCGTCTTATTTCCGAGCCTAAGCGTGCTCACGGACATTTCAATTACGCTGTGTTTGTGGATGGCCATCGTATCGGTAGCGGAATCGGCATGAATAAGAAAGAAGCTCATCAGAATGCTGCACATGATGCCCTGGAAAAGTTGAAGCGTGCGCGCGATTACCGACAAAAAAAGAAATCGTCATCATCTTCGGAGCCGGAA","9.50","5.61","27165","LLSDILGFKPSRIAFYELAFRHSSCSLVDDEGYRLNNERLEFLGDSVLATAISGYLYRQHPHWDEGDMSQRRSAIVKRQINNVVAKKLRLDRFLIVRGEISQMSSDIMGNTLEALIGAIYLDKGYQAAEKFVLTRFIPVFHELEDSLTDTTTNYKSLLLEWAQKHHLNLEFRLISEPKRAHGHFNYAVFVDGHRIGSGIGMNKKEAHQNAAHDALEKLKRARDYRQKKKSSSSSEPE","1851877 1851095","From gi:7531275:RNase III of B. subtilis digests double stranded RNA and is involved in the processing of rRNA precursors and some mRNAs. Performs endonucleolytic cleavage to 5'-phospho-monoester.TIGR ID: PG1763","ribonuclease III","Cytoplasm","Numerous moderately significant hits in gapped BLAST to ribonuclease III; residues 19-220 are 35% similar to Z99112 of Bacillus subtilis, residues 37-227 are 37% similar to AL034447 of Streptomyces coelicolor.","
InterPro
IPR000999
Domain
Ribonuclease III
G3DSA:1.10.1520.10\"[1-156]Tno description
PF00636\"[38-124]TRibonuclease_3
SM00535\"[14-145]TRIBOc
PS50142\"[1-124]TRNASE_3_2
PS00517\"[38-46]TRNASE_3_1
InterPro
IPR001159
Domain
Double-stranded RNA binding
PF00035\"[154-218]Tdsrm
SM00358\"[154-219]TDSRM
PS50137\"[153-220]TDS_RBD
InterPro
IPR011907
Family
Ribonuclease III, bacterial
TIGR02191\"[2-218]TRNaseIII: ribonuclease III
noIPR
unintegrated
unintegrated
PTHR11207\"[1-228]TRIBONUCLEASE III


","BeTs to 13 clades of COG0571COG name: dsRNA-specific ribonucleaseFunctional Class: KThe phylogenetic pattern of COG0571 is ----YqvCebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB000999 (Ribonuclease III family) with a combined E-value of 2.7e-28. IPB000999A 18-25 IPB000999B 37-48 IPB000999C 108-124 IPB000999D 153-172 IPB000999E 198-218","Residues 2-76 are 42% similar to a (III RIBONUCLEASE HYDROLASE NUCLEASE) protein domain (PD002508) which is seen in Q9ZLH2_BBBBB.","","Thu Jun 14 12:13:32 MDT 2001","","Thu Jun 14 12:13:32 MDT 2001","Thu Jun 14 12:13:32 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:13:32 MDT 2001","Thu Jun 14 12:13:32 MDT 2001","","Tue Jun 26 10:05:16 MDT 2001","Wed Mar 22 15:14:49 MST 2000","Tue Jun 26 10:05:16 MDT 2001","Wed May 23 14:28:24 MDT 2001","Tue Jun 26 10:05:16 MDT 2001","Tue Jun 26 10:05:16 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed May 23 14:28:24 MDT 2001","-53% similar to PDB:1O0W Crystal structure of Ribonuclease III (TM1102) from Thermotoga maritima at 2.0 A resolution (E_value = 2.5E_20);-50% similar to PDB:2A11 Crystal Structure of Nuclease Domain of Ribonuclase III from Mycobacterium Tuberculosis (E_value = 4.7E_19);-49% similar to PDB:1YYK Crystal structure of RNase III from Aquifex Aeolicus complexed with double-stranded RNA at 2.5-angstrom resolution (E_value = 2.3E_13);-49% similar to PDB:1YYW Crystal structure of RNase III from Aquifex aeolicus complexed with double stranded RNA at 2.8-Angstrom Resolution (E_value = 2.3E_13);-49% similar to PDB:1YZ9 Crystal structure of RNase III mutant E110Q from Aquifex aeolicus complexed with double stranded RNA at 2.1-Angstrom Resolution (E_value = 5.1E_13);","","","Residues 38 to 124 (E-value = 4.5e-28) place PG1537 in the Ribonuclease_3 family which is described as RNase3 domain (PF00636)Residues 154 to 218 (E-value = 7.9e-14) place PG1537 in the dsrm family which is described as Double-stranded RNA binding motif (PF00035)","Tue Jun 26 10:05:16 MDT 2001","34541386","","","","","","1","","","PG1763" "PG1538","1853145","1851892","1254","ATGGAACTGAAAAGAGTAGTAGTAACAGGGTTAGGAGCCATTACTCCGCTTGGCAACTCTGCTCCCGAAACGTGGGAAAGCTTAGTGGCAGGCAAGAGTGGAGCCGGACCTATCACGCTCTTTGATGCCTCCAAGTTCAAAACGCAGTTCGCCTGCGAAGTGAAGGGTTTTGACCCTTTGCAACATTTTGACCGCAAGGAGGTGCGTAAGTTAGACCGCTACGCGCAACTTGCACAAGTAGCGGCCGATGAGAGTGTAAAAGACTCCGGCCTCGATTTGGACCAATTGGACAAGAATCGTGTGGGAGTGATCGTTTCTGCCGGAATCGGTGGTCTGACGACTTTCGAAAGTGAAGTGCGCGACTACAATCCGGAGAACGGGCCTCGTTTCAATCCGTTTTTCATCCCCAAGATGATCTCCGATATTGCAGCCGGCCAGATCTCGATCAAATACGGCTTCCATGGTCCTAACTATTCCATCGCATCCGCATGCGCTTCCTCTACCAATGCTCTGATCGATGCTTGCCATCTGATCCGCTTAGGCAAAGCCAATGTAATCATTGCAGGAGGCTCTGAGGCGTCGATTTGCGCTGCCGGAGTGGGAGGTTTCAATGCAATGAATGCTCTCTCCACTCGCAACGATGCTCCACAAGAGGCCAGCCGCCCCTTCAGTGCCAGTCGTGACGGGTTTGTAATGGGTGAAGGAGCAGCATGTATAGTTCTCGAAGAACTGGAACATGCTCTTAAACGCGGTGCTCGCATCTATGCCGAATTGGTGGGAACAGGTCTTTCAGCCGATGCATATCACCTGACGGCAAGTCATCCTGACGGGTTGGGAGCCAAGCTGGTTATGACAAACGCTATCGAAGATGCTGGATTGAAGCCGGAGGATATTGACTACGTCAATGTACACGGTACTTCTACTCCTGTTGGGGACATTTCAGAGGCAAAAGCTATCAAGGATGTCTTCGGAGAACATGCTTATAAGCTGAACATCAGTTCTACCAAGAGTATGACAGGACATCTTCTCGGAGCTGCCGGAGCTGTAGAAGCTATGGTGTGCGTTAAGTCTGTCCACGAGGATATCGTTCCGCCTACGATCAACCATCAGGACGACGATCGCGATCCGGAAATCGATTATAACCTGAACTTTACATTCAACGAAGCACAAAAGCGTCAGGTACGTGTAGCCCTGTCCAATACTTTTGGATTCGGAGGACATAATGCCAGCGTTGTATTCAAGAAGTTCGAGAAA","5.60","-9.37","44507","MELKRVVVTGLGAITPLGNSAPETWESLVAGKSGAGPITLFDASKFKTQFACEVKGFDPLQHFDRKEVRKLDRYAQLAQVAADESVKDSGLDLDQLDKNRVGVIVSAGIGGLTTFESEVRDYNPENGPRFNPFFIPKMISDIAAGQISIKYGFHGPNYSIASACASSTNALIDACHLIRLGKANVIIAGGSEASICAAGVGGFNAMNALSTRNDAPQEASRPFSASRDGFVMGEGAACIVLEELEHALKRGARIYAELVGTGLSADAYHLTASHPDGLGAKLVMTNAIEDAGLKPEDIDYVNVHGTSTPVGDISEAKAIKDVFGEHAYKLNISSTKSMTGHLLGAAGAVEAMVCVKSVHEDIVPPTINHQDDDRDPEIDYNLNFTFNEAQKRQVRVALSNTFGFGGHNASVVFKKFEK","1853145 1851892","In E. coli, the FabB protein catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP.TIGR ID: PG1764","3-oxoacyl-acyl-carrier-protein synthase","Cytoplasm"," This protein is similar to CT770, a predicted 3-oxoacyl-acyl-carrier-protein synthase, and to BT3358.","
InterPro
IPR000794
Domain
Beta-ketoacyl synthase
PTHR11712\"[2-417]TKetoacyl_synth
InterPro
IPR014030
Domain
Beta-ketoacyl synthase, N-terminal
PF00109\"[4-247]Tketoacyl-synt
PS00606\"[155-171]TB_KETOACYL_SYNTHASE
InterPro
IPR014031
Domain
Beta-ketoacyl synthase, C-terminal
PF02801\"[255-370]TKetoacyl-synt_C
noIPR
unintegrated
unintegrated
G3DSA:3.40.47.10\"[6-260]T\"[263-416]TG3DSA:3.40.47.10
PTHR11712:SF23\"[2-417]TPTHR11712:SF23


","BeTs to 10 clades of COG0304COG name: 3-oxoacyl-(acyl-carrier-protein) synthase IFunctional Class:� IThe phylogenetic pattern of COG0304 is ----YqvCEBRhuj----inxNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 284-320 are 62% similar to a (SYNTHASE TRANSFERASE POLYKETIDE BIOSYNTHESIS) protein domain (PD000237) which is seen in O54440_PSEAE.Residues 3-222 are 24% similar to a (PUTATIVE POLYKETIDE BETA-KETOACYL) protein domain (PD090732) which is seen in PKSF_BACSU.Residues 73-144 are 41% similar to a (SYNTHASE TRANSFERASE POLYKETIDE ACYLTRANSFERASE PROTEIN) protein domain (PD001987) which is seen in O67612_AQUAE.Residues 147-415 are 22% similar to a (SIMILAR TO POLYKETIDE SYNTHASE.) protein domain (PD067861) which is seen in Q18559_CAEEL.Residues 223-277 are 65% similar to a (SYNTHASE TRANSFERASE POLYKETIDE BIOSYNTHESIS) protein domain (PD000224) which is seen in O94297_SCHPO.Residues 322-375 are 61% similar to a (SYNTHASE TRANSFERASE POLYKETIDE BIOSYNTHESIS PROTEIN) protein domain (PD000208) which is seen in O34340_BACSU.Residues 147-210 are 51% similar to a (SYNTHASE TRANSFERASE POLYKETIDE ACYLTRANSFERASE PROTEIN) protein domain (PD000145) which is seen in O67612_AQUAE.Residues 4-69 are 39% similar to a (SYNTHASE TRANSFERASE POLYKETIDE BIOSYNTHESIS) protein domain (PD000325) which is seen in KAS1_STRVN.Residues 4-71 are 55% similar to a (SYNTHASE TRANSFERASE ACYLTRANSFERASE BETA-KETOACYL-ACP) protein domain (PD001234) which is seen in P73283_SYNY3.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Mon Dec 22 10:42:59 2003","Thu Apr 6 13:35:04 MDT 2000","Mon Dec 22 10:42:59 2003","Mon Dec 22 10:42:59 2003","","Mon Dec 22 10:42:59 2003","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Dec 22 10:42:59 2003","-72% similar to PDB:1J3N Crystal Structure of 3-oxoacyl-(acyl-carrier protein) Synthase II from Thermus thermophilus HB8 (E_value = 1.2E_120);-68% similar to PDB:1E5M BETA KETOACYL ACYL CARRIER PROTEIN SYNTHASE II (KASII) FROM SYNECHOCYSTIS SP. (E_value = 1.9E_113);-67% similar to PDB:2GQD The crystal structure of B-ketoacyl-ACP synthase II (FabF) from Staphylococcus aureus (E_value = 2.5E_110);-67% similar to PDB:1B3N BETA-KETOACYL CARRIER PROTEIN SYNTHASE AS A DRUG TARGET, IMPLICATIONS FROM THE CRYSTAL STRUCTURE OF A COMPLEX WITH THE INHIBITOR CERULENIN. (E_value = 3.1E_108);-67% similar to PDB:1KAS BETA-KETOACYL-ACP SYNTHASE II FROM ESCHERICHIA COLI (E_value = 3.1E_108);","","","Residues 4 to 247 (E-value = 1.3e-79) place PG1538 in the ketoacyl-synt family which is described as Beta-ketoacyl synthase, N-terminal domain (PF00109)Residues 255 to 417 (E-value = 3.5e-66) place PG1538 in the Ketoacyl-synt_C family which is described as Beta-ketoacyl synthase, C-terminal domain (PF02801)","Mon Dec 22 10:42:59 2003","34541387","","","Shen,Z. and Byers,D.M. 1996. Isolation of Vibrio harveyi acyl carrier protein and the fabG, acpP, and fabF genes involved in fatty acid biosynthesis. J. Bacteriol. 178(2): 571-573. PubMed: 8550484.Magnuson,K., Carey,M.R. and Cronan,J.E. Jr. 1995. The putative fabJ gene of Escherichia coli fatty acid synthesis is the fabF gene. J. Bacteriol. 177(12): 3593-3595. PubMed: 7768872.Kutchma,A.J., Hoang,T.T. and Schweizer,H.P. Molecular characterization of the acpP-containing region of the Pseudomonas aeruginosa chromosome. Unpublished, gi: 2738156.","","Thu Apr 6 11:52:52 MDT 2000","1","","","PG1764" "PG1538.1","1853391","1853158","234","ATGTCTGAAGTAGAAAAAAAAGTGATCGACCTCGTAGTTGACAAATTGAATGTAGAAGCTTCTGAAGTAACGCGTGAAGCCAGTTTCTCAAATGACCTCGGAGCAGACTCTCTTGATACAGTTGAGTTGATGATGAATTTCGAAAAGGAATTCAACATGTCTATCCCTGACGACCAAGCACAGGAGATCAAGACTGTCGGCGACGCTATCGACTATATCGAAAAAAACCTGAAG","0.00","0.00","8768","MSEVEKKVIDLVVDKLNVEASEVTREASFSNDLGADSLDTVELMMNFEKEFNMSIPDDQAQEIKTVGDAIDYIEKNLK","","TIGR ID: PG1765Swiss-Prot: This protein is the carrier of the growing fatty acid chain in fatty acid biosynthesis.","acyl carrier protein","Cytoplasm","Numerous hits using gapped BLAST to acyl carrier proteins, including residues 6-75 are 51% similar to gi|3746421|gb|AAC63956.1| (AF038925) acyl carrier protein precursor in Toxoplasma gondii, residues 8-76 are 55% similar to gi|6459729|gb|AAF11495.1|AE002033_3 (AE002033) acyl carrier protein in Deinococcus radioduran, and residues 1-76 are 61% similar to gi|1684621|emb|CAA57794.1| (X82399) acyl carrier protein (ACP) in Azospirillum brasilense.","
InterPro
IPR003231
Family
Acyl carrier protein (ACP)
PD000887\"[32-78]TAcyl_carrier
TIGR00517\"[1-77]Tacyl_carrier
InterPro
IPR006163
Domain
Phosphopantetheine-binding
PF00550\"[6-73]TPP-binding
PS50075\"[4-74]TACP_DOMAIN
InterPro
IPR009081
Family
Acyl carrier protein-like
G3DSA:1.10.1200.10\"[3-75]TACP_like
SSF47336\"[1-74]TACP_like
noIPR
unintegrated
unintegrated
PTHR20863\"[1-77]TPTHR20863
PTHR20863:SF5\"[1-77]TPTHR20863:SF5


","BeTs to 13 clades of COG0236 COG name: Acyl carrier protein Functional Class: IThe phylogenetic pattern of COG0593 is ----yqVceBRhUjgpolinx Number of proteins in this genome belonging to this COG is 1","","","Thu Jul 5 13:09:46 MDT 2001","Thu Jul 5 13:09:46 MDT 2001","Thu Jul 5 13:09:46 MDT 2001","Thu Jul 5 13:09:46 MDT 2001","Thu Jul 5 13:10:33 MDT 2001","Thu Jul 5 13:09:46 MDT 2001","Thu Jul 5 13:09:46 MDT 2001","Thu Jul 5 13:10:33 MDT 2001","Thu Jul 5 13:10:33 MDT 2001","Thu Jul 5 13:09:46 MDT 2001","Thu Jul 5 13:23:09 MDT 2001","Thu Jul 5 13:09:46 MDT 2001","Thu Jul 5 13:23:09 MDT 2001","Thu Jul 5 13:28:07 MDT 2001","Thu Jul 5 13:09:46 MDT 2001","Thu Jul 5 13:09:46 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Thu Jul 5 13:23:09 MDT 2001","Thu Jul 5 13:09:46 MDT 2001","-73% similar to PDB:1X3O Crystal structure of the acyl carrier protein from thermus thermophilus HB8 (E_value = 6.5E_17);-75% similar to PDB:1L0H CRYSTAL STRUCTURE OF BUTYRYL-ACP FROM E.COLI (E_value = 1.4E_16);-75% similar to PDB:2FHS Structure of Acyl Carrier Protein Bound to FabI, the Enoyl Reductase from Escherichia Coli (E_value = 1.4E_16);-77% similar to PDB:1HY8 SOLUTION STRUCTURE OF B. SUBTILIS ACYL CARRIER PROTEIN (E_value = 1.9E_16);-75% similar to PDB:1L0I Crystal structure of butyryl-ACP I62M mutant (E_value = 3.2E_16);","","","Residues 6 to 73 (E-value = 1.2e-19) place PG1538.1 in the PP-binding family which is described as Phosphopantetheine attachment site (PF00550)","Thu Jul 5 13:09:46 MDT 2001","34541388","","","Maiti,M.K. and Ghosh,S, Acyl carrier protein of Azospirillum brasilense: properties of the purified protein and sequencing of the corresponding gene, acpP, Microbiology 142 (Pt 8), 2097-2103 (1996), PubMed: 8760922.","","Thu Jul 5 13:23:09 MDT 2001","1","Thu Jul 5 13:09:46 MDT 2001","","PG1765" "PG1539","1853560","1854138","579","ATGAGAAAAGTAGCGGTTTTAGCTTCCGGTAATGGCTCAAATGCAGAAAATCTGTGTCATTTCTTTGCCCAAAGAGGTTCGGCAAGCTTGGCTGTGATCCTCAGCAATCACTCCGATGCAGGAGTTATGGCACGTGCCCATCGGCTGAAAATACCGGCTTATTCGTTTACTACCCAAGAGATGCTCGAAGGATCGAAGCCCATTGCCCTCTTGAAAGAATTAGGGATAGACCTGATCGTGCTGGCCGGCTATATGTGTTATATAACCGCACCCTACTTGGAATCCTTCCCCGACAGGATCGTCAATATCCATCCTGCATTATTGCCCAAGTTCGGCGGAAAAGGAATGTACGGACATCACGTACACGAAGCCGTCCTTGCTGCAAGGGAAAAAGAAAGCGGTATCACCATTCATCTTGTCGATGGACATTATGACCACGGCAAAATCCTCCGTCAAGCAGTCTGTCCGGTCCTTCCGGAAGATACTCCGGATACGCTGGCCCAAAGAATCCACGCTTTGGAATATGCACACTATCCGGAAACTGTAGAGGAATACCTGCTCCGACTTCCTACGGAATCA","6.80","-1.26","21222","MRKVAVLASGNGSNAENLCHFFAQRGSASLAVILSNHSDAGVMARAHRLKIPAYSFTTQEMLEGSKPIALLKELGIDLIVLAGYMCYITAPYLESFPDRIVNIHPALLPKFGGKGMYGHHVHEAVLAAREKESGITIHLVDGHYDHGKILRQAVCPVLPEDTPDTLAQRIHALEYAHYPETVEEYLLRLPTES","1853533 1854138","TIGR ID: PG1766","phosphoribosylglycinamide formyltransferase","Cytoplasm","Residues 2-183 have 41% similarity to U30875, V. unguiculata glycinamide ribonucleotide transformylase (GART). Residies 2-182 have 40% similarity to X74767, A. thaliana phosphoribosylglycinamide formyltransferase.Residues 1-184 have 38% similarity to AB045609,S. suis phosphoribosyl glycinamide transformylase-N.","
InterPro
IPR002376
Domain
Formyl transferase, N-terminal
G3DSA:3.40.50.170\"[2-186]TFormyl_transf_N
PF00551\"[2-182]TFormyl_trans_N
SSF53328\"[2-186]Tformyl_transf
InterPro
IPR004607
Family
Phosphoribosylglycinamide formyltransferase
PIRSF000413\"[1-191]TGAR_TFase
TIGR00639\"[2-193]TPurN
noIPR
unintegrated
unintegrated
PTHR10520\"[78-184]TPTHR10520
PTHR10520:SF9\"[78-184]TPTHR10520:SF9


","BeTs to 7 clades of COG0299COG name: Folate-dependent phosphoribosylglycinamide formyltransferase PurNFunctional Class: FThe phylogenetic pattern of COG0299 is ----yqvcebrh---------Number of proteins in this genome belonging to this COG is 1","***** IPB001555 (Phosphoribosylglycinamide formyltransferase active site) with a combined E-value of 4.6e-06. IPB001555 102-113","Residues 2-183 are 41% similar to a (TRANSFERASE PROTEIN FORMYLTRANSFERASE BIOSYNTHESIS) protein domain (PD001209) which is seen in PUR3_VIGUN.","","Thu Jun 14 12:13:41 MDT 2001","","Thu Jun 14 12:13:41 MDT 2001","Thu Jun 14 12:13:41 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:13:41 MDT 2001","Thu Jun 14 12:13:41 MDT 2001","","","Thu Mar 1 16:12:59 MST 2001","Tue Jun 26 09:56:40 MDT 2001","Thu Mar 1 16:12:59 MST 2001","Tue Jun 26 09:56:40 MDT 2001","Tue Jun 26 09:56:40 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 16:12:59 MST 2001","-52% similar to PDB:1MEO human glycinamide ribonucleotide Transformylase at pH 4.2 (E_value = 5.3E_20);-52% similar to PDB:1NJS human GAR Tfase in complex with hydrolyzed form of 10-trifluoroacetyl-5,10-dideaza-acyclic-5,6,7,8-tetrahydrofolic acid (E_value = 5.3E_20);-52% similar to PDB:1RBM Human GAR Tfase complex structure with polyglutamated 10-(trifluoroacetyl)-5,10-dideazaacyclic-5,6,7,8-tetrahydrofolic acid (E_value = 5.3E_20);-52% similar to PDB:1RBQ Human GAR Tfase complex structure with 10-(trifluoroacetyl)-5,10-dideazaacyclic-5,6,7,8-tetrahydrofolic acid (E_value = 5.3E_20);-52% similar to PDB:1RBY Human GAR Tfase complex structure with 10-(trifluoroacetyl)-5,10-dideazaacyclic-5,6,7,8-tetrahydrofolic acid and substrate beta-GAR (E_value = 5.3E_20);","","","Residues 2 to 182 (E-value = 1.8e-42) place PG1539 in the Formyl_trans_N family which is described as Formyl transferase (PF00551)","Tue Jun 26 09:56:40 MDT 2001","34541389","","","","","","1","","","PG1766" "PG1540","1854138","1855175","1038","ATGAAACACTCCGTCCCAATGTCCAAGCCATCCAACATACTATATTATATAGTAGCAGGTTTTGTCCTGCTCCTTTCTCTTTCATGCAGTAGAGCATCTGATGTTTGCCACCTCAAACTGAATCTCTCCAATCTCAGCCGAGGCGATTCGGTTCTGGCTCTGCGAATTGAAGGGGAAGGCTCCTTTCGCACAGAAGAGATACACGTTACTTCGCCCAAGGCACAGATTCGACACGAAATCAAAGGCGATGTTAGTCGCATTCTATTATATTTCAACGAGGGCAATAACGTGCTTCGGCTCTATCCTGAAAAGGGAGAAGATATTAAAATCACTCTCGATGCCGACCAACCCCTCCTGCCTAAAATAAAAGGAGGAAGTACACATGCCACACTGAACGAGTTCATGCAAACTGCAGAAGAAGAGATCCATCGCTATCAGGATCATCTCCGAACCACCGACTTCCCCTCCAAAGCAAAAGCCTTCAGAGACTTGCGGCTCAAAGCCCTTGACTTCTATCTTTCCCATCCCGATGCCACCGGTATAAACAGATTAGCGGAGGAATACGACCTTTTCGACATAGACCTCATTCGCCGCTCCGGTATCTCGATGCACCGGCTTCCCCCGTCTCTTGATTCCATCCTTAGCCGGAATAAGTCGTACGCAGTCGGCCGTTTGGCTCCGGACTTCCTTGTCAAGGATATTGATCAGCGATCTTTCACTCTTTCCTGGTATAGGGGACAAGATGTGCTTTTGCTCTTCACGAACAAGCCTGACTCCACTACCGCTACATCATTGAAAGTATGGAGAGATAAAGAAGGAAAGACAAAGCCGGAAACCCTTACTCTCTCGCTCTTTGCACCGGACTCATCTCTCCGTAAACTCATCAGGAAGTTGGCTTTGCCCGGACGTGTGGCATCGGATAGTATCGGACAGGTATCGACACTTCTCGAGCGATATGGCATAGACAGCCTTCCATATACTATCCACATCGACACAGCCGGAAATATCCGTAGCCGCCGTGCAAGCTACAGTCTCCGA","10.00","9.33","39074","MKHSVPMSKPSNILYYIVAGFVLLLSLSCSRASDVCHLKLNLSNLSRGDSVLALRIEGEGSFRTEEIHVTSPKAQIRHEIKGDVSRILLYFNEGNNVLRLYPEKGEDIKITLDADQPLLPKIKGGSTHATLNEFMQTAEEEIHRYQDHLRTTDFPSKAKAFRDLRLKALDFYLSHPDATGINRLAEEYDLFDIDLIRRSGISMHRLPPSLDSILSRNKSYAVGRLAPDFLVKDIDQRSFTLSWYRGQDVLLLFTNKPDSTTATSLKVWRDKEGKTKPETLTLSLFAPDSSLRKLIRKLALPGRVASDSIGQVSTLLERYGIDSLPYTIHIDTAGNIRSRRASYSLR","1854138 1855175","TIGR ID: PG1767","hypothetical protein","Cytoplasm, Periplasm","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR000866
Domain
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
PF00578\"[222-253]TAhpC-TSA
InterPro
IPR012335
Domain
Thioredoxin fold
G3DSA:3.40.30.10\"[221-343]TThioredoxin_fold
InterPro
IPR012336
Domain
Thioredoxin-like fold
SSF52833\"[222-339]TIPR012336
noIPR
unintegrated
unintegrated
PS51257\"[1-29]TPROKAR_LIPOPROTEIN


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541390","","","","","","1","","","PG1767" "PG1541","1855204","1856742","1539","ATGTTAGTAAAGACCTTTGCCGCTGCTCTGCACAGCATAGACGCCCTTACCGTTACCGTCGAAGTCAATATCACCCGAGGTTGCTATCTCAGTATGGTAGGACTCCCCGATGCAGCAGTCCGTGAGAGTCTGGATAGGATTCGCTCCACATACGACTGTCTGAATATCACCTTTCCCCAAAAGAGCATTACGATCAATCTCAGTCCGGCAGACATCAAAAAAGAAGGTACTGCCTACGACCTTCCCCTTGCCATCGCACTCATGGCTGCAGATGGCATTATCGGAGCAGACTCTCTGCCGCGCTATATGATTATGGGCGAGCTTTCGTTGGATGGATCGCTCCGTCCGATCAAAGGAGCCTTGCCCATTGCCATCCAAGCACGTGCCGAAGGATTCGACGGGCTGATCCTCCCTGCGGAAAATGCACGTGAAGCAGCCGTCGTGAACAACCTCAATGTCTATGGCGTGAAGCATATTGCAGAAGTGATCAGCCATTTCAATGGGGGCGATCAGCTACAGCCCACTATAGTCGATACGCGCAGGGAATTTTTCGACCATCAGCAGCAGGTGTCTTTCGACTTTTCGGAGGTGAAGGGGCAGGAGAAGGTCAAGCGCGCCCTCGAAGTGGCGGCCGCAGGCGGACACAATCTGATCATGGTCGGGAGTCCCGGCAGTGGGAAATCCATGATGGCTAAGCGAATGCCCGGAATTCTTCCTCCGTTTACACTTAGCGAATCGCTCGAAACGACCAAGATATACTCCGTGGCCGGTAAGCTGGGAGTCAATTCGATGCTCCTGACCCAACGCCCTTTCCGCTCGCCCCACCATTCCATCTCTTCCGCGGCACTCGTGGGTGGCGGCACTTATCCACAGCCCGGAGAGATCAGTCTGGCGCACAATGGCGTGCTCTTTTTGGACGAGCTGGCCGAGTTCAACCGCTCCGTTCTCGAGGTGATGCGGCAGCCTTTGGAAGATCGGCAGATCACCGTTTCGAGAGCCAGAATGACGGTGGATTATCCTGCCGGATTCATGCTCGTGGCTGCCATGAATCCCTGTCCTTGCGGCTACTACAACCATCCCACACGCCCTTGCACCTGCGCGCCCGGACAGGTGGAGAAATATCTCAGCCGCATATCGGGGCCTCTTCTGGACAGGATCGATATACAGGTAGAGATTACGCCTGTTCCTTTTGAGAAAATATCCGATAGCCGGCCGGCCGAAAGCAGCGAGAAAATCCGCCAGCGAGTGGTTGCAGCACGCGAAATCCAAAGCAAACGATTTGCCGACTACTCCGGTGTCCATTGCAATGCCCAGATGGACGACAAATTGATGAACCGCTATGCACTGCCCGACGAAAAGGGACTTCAACGATTGAGGACGGCTATGGAACGCTTCGACCTCTCTGCACGTGCCTATGGCCGTATCTTGAAGGTGGCTCGTACCATTGCTGACCTGGCCGGCAGCGAAGATGTGGGTGGCGAACACATCGCAGAAGCCATCGGCTACCGCAATCTCGACCGGGAAAACTGGGGCAAGGCT","7.10","0.35","56104","MLVKTFAAALHSIDALTVTVEVNITRGCYLSMVGLPDAAVRESLDRIRSTYDCLNITFPQKSITINLSPADIKKEGTAYDLPLAIALMAADGIIGADSLPRYMIMGELSLDGSLRPIKGALPIAIQARAEGFDGLILPAENAREAAVVNNLNVYGVKHIAEVISHFNGGDQLQPTIVDTRREFFDHQQQVSFDFSEVKGQEKVKRALEVAAAGGHNLIMVGSPGSGKSMMAKRMPGILPPFTLSESLETTKIYSVAGKLGVNSMLLTQRPFRSPHHSISSAALVGGGTYPQPGEISLAHNGVLFLDELAEFNRSVLEVMRQPLEDRQITVSRARMTVDYPAGFMLVAAMNPCPCGYYNHPTRPCTCAPGQVEKYLSRISGPLLDRIDIQVEITPVPFEKISDSRPAESSEKIRQRVVAAREIQSKRFADYSGVHCNAQMDDKLMNRYALPDEKGLQRLRTAMERFDLSARAYGRILKVARTIADLAGSEDVGGEHIAEAIGYRNLDRENWGKA","1855156 1856742","TIGR ID: PG1768","competence protein ComM","Cytoplasm","Residues 2-503 have 46% similarity to AE002396, N. meningitidis competence protein ComM.Residues 4-503 have 44% similarity to AE001727, T. maritima comM protein.This sequence is similar to BT2846. ","
InterPro
IPR000523
Domain
Magnesium chelatase, ChlI subunit
PF01078\"[193-400]TMg_chelatase
InterPro
IPR001208
Family
MCM
PR01657\"[212-227]T\"[293-307]T\"[321-334]T\"[345-357]TMCMFAMILY
InterPro
IPR003593
Domain
AAA+ ATPase, core
SM00382\"[213-396]TAAA
InterPro
IPR004482
Family
Mg chelatase-related protein
TIGR00368\"[5-503]TMg_chelat_rel
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[189-393]TG3DSA:3.40.50.300
SSF52540\"[189-507]TSSF52540
SSF54211\"[5-166]TSSF54211


","BeTs to 7 clades of COG0606COG name: Predicted ATPasesFunctional Class: RThe phylogenetic pattern of COG0606 is --T--qvce-rhuj--o----Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 193-503 are 54% similar to a (PROTEIN CONSERVED COMPETENCE COMM) protein domain (PD007689) which is seen in Q55372_SYNY3.Residues 78-163 are 39% similar to a (PROTEASE ATP-BINDING HYDROLASE SERINE PROTEIN) protein domain (PD001169) which is seen in Q55372_SYNY3.Residues 4-76 are 43% similar to a (PROTEIN COMPETENCE COMM PSSR-ILVL) protein domain (PD007275) which is seen in Q55372_SYNY3.","","Thu Jun 14 12:14:03 MDT 2001","","Thu Jun 14 12:14:03 MDT 2001","Thu Jun 14 12:14:03 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:14:03 MDT 2001","Thu Jun 14 12:14:03 MDT 2001","","","Thu Mar 1 16:18:35 MST 2001","Fri Dec 19 10:30:44 2003","Thu Mar 1 16:18:35 MST 2001","","Tue Jun 26 09:53:43 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 16:18:35 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 19 to 348 (E-value = 5e-55) place PG1541 in the Mg_chelatase family which is described as Magnesium chelatase, subunit ChlI (PF01078)","Tue Jun 26 09:53:43 MDT 2001","34541391","","","","","","1","","","PG1768" "PG1542","1856750","1857070","321","ATGGATAGCACATACATACGCCGGCCATCATTTGCCGCCCATCGCCTGATTATCAGCGAGACGAGCTTCTCTTACCCGCTTCTCCGATTGGATACTACATCCGGATGCTGGGAGCTAAGCTCTTTTTCCCACGAATCCGAGGCCGTTGTTTTTCTGTCGGGGAGTCTCTTGCTTTGTCCGGCTGATCTGTCGCCTCACCTCCCTGCCGATACACAAAGTGTCACGCTGTCCGAAATGCAAAGCCGGCTCCACTTGCTACAGACCGTCCCCGTGCATCTCTACCACTTCCCCACTGTTTCTTCTCTCGCCCATCTCCTCCGC","6.60","-1.43","11950","MDSTYIRRPSFAAHRLIISETSFSYPLLRLDTTSGCWELSSFSHESEAVVFLSGSLLLCPADLSPHLPADTQSVTLSEMQSRLHLLQTVPVHLYHFPTVSSLAHLLR","1856750 1857070 [Delay by 102 1990 95 0]","TIGR ID: PG1769","hypothetical protein","Cytoplasm","No hit found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541392","","","","","","1","","","PG1769" "PG1543","1858059","1857466","594","ATGAGAAGTAAAATCTTTTTCTCCCTCTTGATGGCTATCGTTTTCTTGAGTGGGGGATGCAGAACGAATCAGACCAACAGTCCCACAGAAATGACGCAGACTCATAACCAGAAGCCCCAAAACGATTTCCCGAAACCTATCCTCATCGGAGGAGAGGAGGGCAATGGCCACGATGGAGTAGCACCCATGACGCCGGCTATGGCATTGGCTCCGATCATCATCTACAAGACGCGAGGCGACTATCGCAATCTCGTGCCTATCACCCTCTCGGCTGACAAAAAGTATGTGGTGGCACGTCCTGCCCCTTCCGATCTTCGTCGTGGCGATGGTTTCTGCACTCCGGTGGAGCTGGCCGACGGCTATCTCCTCGACCGCCGTGGCATCGGGCCTACCACAGCTTTCGTCGAATACACCTATGAGCAGTACTTCGCCATCAAAGGCATTCCCTCCCAAAGCGACCTTTTGCAGAGGATCGTCGATGCAGATCCCTTCACGGAGCTGTACCGCTGCGACCGTAGCCGCTGCAACCCGAACGACATTAAATCCATGAACGCCTACATCAAAGCAGGCAAACCCGGAGCCGTATCGCTCAAA","8.90","4.28","21866","MRSKIFFSLLMAIVFLSGGCRTNQTNSPTEMTQTHNQKPQNDFPKPILIGGEEGNGHDGVAPMTPAMALAPIIIYKTRGDYRNLVPITLSADKKYVVARPAPSDLRRGDGFCTPVELADGYLLDRRGIGPTTAFVEYTYEQYFAIKGIPSQSDLLQRIVDADPFTELYRCDRSRCNPNDIKSMNAYIKAGKPGAVSLK","1858059 1857466 [Shadowed by 1994]","NO TIGR ID corresponds to this gene.","hypothetical protein","Periplasm, Outer membrane","No significant hit found in gapped BLAST with E value less than e-04.","
noIPR
unintegrated
unintegrated
PS51257\"[1-20]TPROKAR_LIPOPROTEIN
signalp\"[1-22]?signal-peptide
tmhmm\"[5-23]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG1544","1857427","1858101","675","TTGAAAGAAACGGAAGGAAAAATCTCGCAGACTTCTTTATTTGAGCGATACGGCTCCGGGTTTGCCTGCTTTGATGTAGGCGTTCATGGATTTAATGTCGTTCGGGTTGCAGCGGCTACGGTCGCAGCGGTACAGCTCCGTGAAGGGATCTGCATCGACGATCCTCTGCAAAAGGTCGCTTTGGGAGGGAATGCCTTTGATGGCGAAGTACTGCTCATAGGTGTATTCGACGAAAGCTGTGGTAGGCCCGATGCCACGGCGGTCGAGGAGATAGCCGTCGGCCAGCTCCACCGGAGTGCAGAAACCATCGCCACGACGAAGATCGGAAGGGGCAGGACGTGCCACCACATACTTTTTGTCAGCCGAGAGGGTGATAGGCACGAGATTGCGATAGTCGCCTCGCGTCTTGTAGATGATGATCGGAGCCAATGCCATAGCCGGCGTCATGGGTGCTACTCCATCGTGGCCATTGCCCTCCTCTCCTCCGATGAGGATAGGTTTCGGGAAATCGTTTTGGGGCTTCTGGTTATGAGTCTGCGTCATTTCTGTGGGACTGTTGGTCTGATTCGTTCTGCATCCCCCACTCAAGAAAACGATAGCCATCAAGAGGGAGAAAAAGATTTTACTTCTCATTTTCTACTCGGTATTAGTGAAGAGAATCGAATTTCTCGTCTG","6.00","-5.92","24562","LKETEGKISQTSLFERYGSGFACFDVGVHGFNVVRVAAATVAAVQLREGICIDDPLQKVALGGNAFDGEVLLIGVFDESCGRPDATAVEEIAVGQLHRSAETIATTKIGRGRTCHHILFVSREGDRHEIAIVASRLVDDDRSQCHSRRHGCYSIVAIALLSSDEDRFREIVLGLLVMSLRHFCGTVGLIRSASPTQENDSHQEGEKDFTSHFLLGISEENRISRL","1857427 1858101","TIGR ID: PG1770","hypothetical protein","Cytoplasm","No hit found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541393","","","","","","1","","","PG1770" "PG1545","1858181","1859200","1020","ATGAAAGAAAGAATCAATCAACTCCTACAGGAAATCGGTCAGTGTGTGGCTGCCACCGTGGAGGAAGCCGAAGCTCTGCGAATCAAGTATCTAAGCAAAAAGGGCGAAATAGCCCGTCTGTTCGATGACTTCCGGCTGGTACCGTCCGAAGAGAAAAAGCAAATCGGACAAATGCTCAATGAGCTGAAAAACAAGGCTCAGGAGCATATCAACTCCCTTCGCGAGCGGGCACAGGCAGGCTCTGCACAAGCTTCGGCAGAAACCGACCTGACACGAACATCATACCCGACGAGACTCGGAACACGCCATCCGATCTCCCTGGTGAAGCAGGAGATCTGCGAGATCTTTGCCCGCCTCGGCTTCAGTATCGCCGACGGGCCGGAGATAGAGGACGACTGGCATGTATTCTCTTCGATGAATTTCGCCGAAGACCATCCTGCTCGTGATATGCAGGACACATTCTTCATCGAGCATCGCCCCGATGTCATCCTTCGCACGCATACGTCCAGTGTCCAAAGCCGGGTGATGGAAAAGACACAACCGCCGATTCGCGTCATTTGCCCCGGGCGTACCTACCGAAACGAAGCTATCTCCTATCGGGCGCATTGTTTCTTTCATCAGGTGGAAGCACTGTATGTGGACAAGGATGTTTCTTTCGCCGATTTGCGGCAGGTGCTTCTTTACTTCGCACAGGAAATGTTCGGAGCCGAAACCAAAATACGCCTTCGCCCTTCTTATTTCCCCTTTACCGAACCGTCTGCCGAGATGGACATCTCCTGCAATATATGTGGGGGTAAAGGTTGCAACTTCTGCAAGCATACGGGATGGGTGGAAATACTCGGATGCGGCATGGTGGATCCCAACGTATTGGACAACTGCGGCATAGACAGCAAGAAATACAGCGGCTATGCGCTCGGTATGGGTATCGAACGTATCACCAATCTTAAGTACCGAGTCAAAGACCTTCGCTTCTTCTCGGAGAACGACCTCAACTTCTTGGAACAGTTCAAGAGCGTGCAC","6.50","-3.04","38928","MKERINQLLQEIGQCVAATVEEAEALRIKYLSKKGEIARLFDDFRLVPSEEKKQIGQMLNELKNKAQEHINSLRERAQAGSAQASAETDLTRTSYPTRLGTRHPISLVKQEICEIFARLGFSIADGPEIEDDWHVFSSMNFAEDHPARDMQDTFFIEHRPDVILRTHTSSVQSRVMEKTQPPIRVICPGRTYRNEAISYRAHCFFHQVEALYVDKDVSFADLRQVLLYFAQEMFGAETKIRLRPSYFPFTEPSAEMDISCNICGGKGCNFCKHTGWVEILGCGMVDPNVLDNCGIDSKKYSGYALGMGIERITNLKYRVKDLRFFSENDLNFLEQFKSVH","1858181 1859200 [Shorter 1996 738 99]","The phenylalanyl-tRNA synthetase is typically a heteroteramericmolecule consisting of two alpha and two beta chains. Phenylalanyl-tRNA synthetase alpha chain is likely to be acytoplasmically located tetramer of two alpha and two beta chainsbelonging to class-II aminoacyl-tRNA synthetases. Reaction: ATP + L-phenylalanine + tRNA(Phe) = AMP + pyrophosphate + L-phenylalanyl-tRNA(Phe). The beta subunit is PG0086.TIGR ID: PG1771","phenylalanyl-tRNA synthetase alpha subunit","Cytoplasm","Numerous significant hits using gapped BLAST to phenylalanyl-tRNA synthetase alpha chains from, e.g., Chlamydia muridarum (gi: 7190263), Chlamydia trachomatis (gi: 3329307), Bacillus subtilis (gi: 2507429), among others.This protein is similar to CT836, a predicted phenylalanyl-tRNA synthetase alpha chain protein, and to BT1669.","
InterPro
IPR002319
Family
Phenylalanyl-tRNA synthetase, class IIc
PTHR11538\"[89-340]TtRNA-synt_2d
PF01409\"[88-336]TtRNA-synt_2d
InterPro
IPR004188
Domain
Aminoacyl tRNA synthetase, class II, N-terminal
PF02912\"[17-71]TPhe_tRNA-synt_N
InterPro
IPR004529
Family
Phenylalanyl-tRNA synthetase, alpha subunit
TIGR00468\"[36-338]TpheS
InterPro
IPR006195
Domain
Aminoacyl-transfer RNA synthetase, class II
PS50862\"[108-315]TAA_TRNA_LIGASE_II
InterPro
IPR010978
Domain
tRNA-binding arm
SSF46589\"[9-98]TtRNA_binding_arm
noIPR
unintegrated
unintegrated
G3DSA:3.30.930.10\"[4-340]TG3DSA:3.30.930.10
SSF55681\"[87-340]TSSF55681


","BeTs to 17 clades of COG0016COG name: Phenylalanyl-tRNA synthetase alpha subunitFunctional Class: JThe phylogenetic pattern of COG0016 is amtkYqvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** PF01409 (tRNA synthetases class II (F)) with a combined E-value of 4.9e-43. PF01409A 129-155 PF01409B 198-209 PF01409C 239-258 PF01409D 276-289 PF01409E 304-314","Residues 99-336 are 53% similar to a (SYNTHETASE AMINOACYL-TRNA PHENYLALANYL-TRNA PROTEIN) protein domain (PD002080) which is seen in O84843_CHLTR.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Tue Mar 26 15:10:52 2002","Wed May 23 14:50:54 MDT 2001","Mon Dec 8 15:23:31 2003","Tue Mar 26 15:10:52 2002","Wed May 23 14:50:54 MDT 2001","Wed May 23 14:50:54 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Fri Apr 7 13:56:05 MDT 2000","Wed Jul 30 13:10:22 2008","-53% similar to PDB:1B70 PHENYLALANYL TRNA SYNTHETASE COMPLEXED WITH PHENYLALANINE (E_value = 7.6E_54);-53% similar to PDB:1B7Y PHENYLALANYL TRNA SYNTHETASE COMPLEXED WITH PHENYLALANINYL-ADENYLATE (E_value = 7.6E_54);-53% similar to PDB:1EIY THE CRYSTAL STRUCTURE OF PHENYLALANYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH COGNATE TRNAPHE (E_value = 7.6E_54);-53% similar to PDB:1JJC Crystal structure at 2.6A resolution of phenylalanyl-tRNA synthetase complexed with phenylalanyl-adenylate in the presence of manganese (E_value = 7.6E_54);-53% similar to PDB:1PYS PHENYLALANYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS (E_value = 7.6E_54);","","","Residues 17 to 85 (E-value = 1.1e-05) place PG1545 in the Phe_tRNA-synt_N family which is described as Aminoacyl tRNA synthetase class II, N-terminal domain (PF02912)Residues 104 to 323 (E-value = 1.5e-118) place PG1545 in the tRNA-synt_2d family which is described as tRNA synthetases class II core domain (F) (PF01409)","Mon Dec 8 15:23:31 2003","34541394","","","Kast,P., Wehrli,C. and Hennecke,H. 1991. Impaired affinity for phenylalanine in Escherichia coli phenylalanyl-tRNA synthetase mutant caused by Gly-to-Asp exchange in motif 2 of class II tRNA synthetases. FEBS Lett. 293(1-2): 160-163. PubMed: 1959653.Brakhage,A.A., Wozny,M. and Putzer,H. 1990. Structure and nucleotide sequence of the Bacillus subtilis phenylalanyl-tRNA synthetase genes. Biochimie 72(10): 725-734. PubMed: 2127701.Fayat,G., Mayaux,J.F., Sacerdot,C., Fromant,M., Springer,M., Grunberg-Manago,M. and Blanquet,S. 1983. Escherichia coli phenylalanyl-tRNA synthetase operon region. Evidence for an attenuation mechanism. Identification of the gene for the ribosomal protein L20. J. Mol. Biol. 171(3): 239-261. PubMed: 6317865.","","Fri Apr 7 13:56:05 MDT 2000","1","","","PG1771" "PG1547","1859222","1859893","672","ATGCGCAAGGAAGAGCGATACAAAGCCGTTATCGATTGGTTTGCCGAGAATATGCCGGTGGCCGAAACGGAGCTGCGGTACCGGGATCCTTTCCAGTTGCTGGTGGCCGTTATTCTCTCGGCACAATGTACCGACAAGCGCGTCAATATGGTGACACCGGCTCTCTTCTCTGCCTATCCGACAGCAAAGGATATGGCCGGGAGCACGGTGGAGGATTTGTTGTCTTATATAGGAAGTATCAGCTATCCGAACAGCAAAGCGAAGCATCTGGTCGGGATGGCGCAGATGCTTTGCTCTGATTTTGGAGGAGTGGTACCGGACGAGGTGTCGGAACTAACCAAACTGCCCGGCGTAGGCCGTAAGACAGCCAACGTGATAGCCTCCGTCGTCTACGGCAAACCGGCCATGGCCGTAGATACGCACGTATTCAGAGTATCAGAAAGGATAGGCCTGACCACCGGTTCGAAGTCTCCGTTAGAGACGGAGCGAGAGCTGGTTCGCTATATTCCGGATGTGCTGATACCGAAAGCTCATCACTGGCTGATCCTGCATGGACGGTACGTTTGTCTGGCTCGCAAGCCCAAATGTGCAGACTGTGGCATAGCACCATTCTGCCGCTACTACTCGAAAGTTTTTAAGAAGAACAGTACAGCCCTTCCGAAAAAAGGGGAA","9.60","8.92","24887","MRKEERYKAVIDWFAENMPVAETELRYRDPFQLLVAVILSAQCTDKRVNMVTPALFSAYPTAKDMAGSTVEDLLSYIGSISYPNSKAKHLVGMAQMLCSDFGGVVPDEVSELTKLPGVGRKTANVIASVVYGKPAMAVDTHVFRVSERIGLTTGSKSPLETERELVRYIPDVLIPKAHHWLILHGRYVCLARKPKCADCGIAPFCRYYSKVFKKNSTALPKKGE","1859222 1859893 [Shorter 1996 267 99]","TIGR ID: PG1772","endonuclease III","Cytoplasm, Periplasm","Numerous significant hits to endonuclease III proteins in gapped BLAST; e.g. residues 10-212 are 48% similar to emb|CAA72458.1| endonuclease III of Rickettsia prowazekii, residues 2-205 are 46% similar to gb|AAD07651.1| endonuclease III of Helicobacter pylori 26695, residues 1-213 are 44% similar to gb|AAK05169.1|AE006340_2 endonuclease III of Lactococcus lactis subsp. lactis. ","
InterPro
IPR000445
Domain
Helix-hairpin-helix motif
PF00633\"[100-129]THHH
InterPro
IPR003265
Domain
HhH-GPD
PF00730\"[35-170]THhH-GPD
SM00478\"[39-187]TENDO3c
InterPro
IPR003583
Domain
Helix-hairpin-helix DNA-binding, class 1
SM00278\"[110-129]THhH1
InterPro
IPR003651
Domain
Iron-sulfur cluster loop
SM00525\"[188-208]TFES
InterPro
IPR004035
Domain
Endonuclease III, FCL
PS00764\"[189-205]TENDONUCLEASE_III_1
InterPro
IPR004036
Domain
Endonuclease III, HhH
PS01155\"[103-132]?ENDONUCLEASE_III_2
InterPro
IPR005759
Family
Endonuclease III/Nth
TIGR01083\"[4-196]Tnth
InterPro
IPR011257
Domain
DNA glycosylase
SSF48150\"[1-214]TDNA_glycsylse
noIPR
unintegrated
unintegrated
G3DSA:1.10.1670.10\"[110-223]TG3DSA:1.10.1670.10
PTHR10359\"[23-224]TPTHR10359


","BeTs to 16 clades of COG0177COG name: Predicted EndoIII-related endonucleaseFunctional Class: LThe phylogenetic pattern of COG0177 is amtkYQvcebrhuj--olinxNumber of proteins in this genome belonging to this COG is 1","***** IPB001502 (Endonuclease III) with a combined E-value of 9.7e-38. IPB001502A 34-55 IPB001502B 101-132 IPB001502C 138-148 IPB001502D 189-199","Residues 42-205 are 49% similar to a (ENDONUCLEASE III DNA HYDROLASE) protein domain (PD001558) which is seen in O25307_HELPY.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Mar 22 11:30:35 MST 2000","Tue Mar 27 17:03:58 MST 2001","Fri Mar 16 08:37:27 MST 2001","Fri Mar 16 08:37:27 MST 2001","Fri Mar 16 08:37:27 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 5-205 show 26% similarity to PG1209, A/G-specific adenine glycosylase.","Fri Mar 16 08:37:27 MST 2001","Fri Mar 16 08:37:27 MST 2001","-59% similar to PDB:1ORN Structure of a Trapped Endonuclease III-DNA Covalent Intermediate: Estranged-Guanine Complex (E_value = 5.1E_44);-59% similar to PDB:1ORP Structure of a Trapped Endonuclease III-DNA Covalent Intermediate: Estranged-Adenine Complex (E_value = 5.1E_44);-59% similar to PDB:1P59 Structure of a non-covalent Endonuclease III-DNA Complex (E_value = 1.5E_43);-59% similar to PDB:2ABK REFINEMENT OF THE NATIVE STRUCTURE OF ENDONUCLEASE III TO A RESOLUTION OF 1.85 ANGSTROM (E_value = 3.3E_43);-47% similar to PDB:1KEA STRUCTURE OF A THERMOSTABLE THYMINE-DNA GLYCOSYLASE (E_value = 9.7E_19);","","","Residues 35 to 170 (E-value = 1.8e-18) place PG1547 in the HhH-GPD family which is described as HhH-GPD superfamily base excision DNA repair protein (PF00730)Residues 100 to 129 (E-value = 3.2e-07) place PG1547 in the HHH family which is described as Helix-hairpin-helix motif (PF00633)","Fri Mar 16 08:37:27 MST 2001","34541395","","","","","","1","","","PG1772" "PG1548","1859958","1861292","1335","ATGAATCGAGAAAGCTTTTTACTCCTGCTTGTTCTCTTATTTGCTCTCCCGCTCCATCTGCAAGCATCGTCTCCATGCAACAACATGGCAGATACGACTTGTATATCCGATTCGGCCAAAATGTTTCCTCCTGCCATCGGTGTTTACCATGTAAAACCGATGAAAAACACATTGCGGCATTCCCTGCCTCTTGTAGCTGCTTCTCTCCTTACTTTCAACGTGGATGACAATATCCGAGAGCTTCGCTTTACCGGTGCCGGGAGCTTTCATACCAAGATAGACAACGTCAGTCAGCTCGTTCCTCTTATGGCACAGCTTTCGATGAGGGGATTCGGCTATAAGGGACGCAGCAAATCATGGGGAAAAATGCTTGTGTCGGATGCCTTGGGTATGGCACTTATGGGTGGAATGGTCAATGCCGGAAAATATTCGTTCGGACGGTTGCGTCCGGATGGAACTGCTGCCAATTCATACCCATCAGGACATACGGCAACAGCTTTCGCCTGCGCCACACTTTTTCATCTCGAATACGGCTCCCGAAGCCCTTGGTATAGCGCGGCAGGCTATACCGTAGCCTCCCTTACGGGGATCAGCCGTATCGTGAACAATCGGCATTGGGCCAGCGATGTGCTTTGCGGAGCTGCCGTAGGGATATTGGTCGGAGAATTAGGCTATTGGATCAGCGATCTGATCTTCCGCGATCCTACGGGCTACAACTACAAGCTGACCAAGAAACAGGAAGGAACTCTGGAGAGCATGGTCATTTCTCTTTCTACCGGGAATAGATACATCAACCGGCAGATGGACTTTGAAGGCAAGACAGTAGAACGTACCGACGCTTTCGGCATGAACCTGAAGACGACCTTCAATCCGAGCTTTGCTCGCTGGGTACGAATCGGATCGCAATTCAGCGTTTCGACAGAGAAGCAGAAAGTCCTTACGCGAGAAAGGCCGGCAAAAGTTTTCGTAGCTCCGGCGATCTCACTCGGACTTTCTGCCGGTGTAGAATGGCATCCATGGCAGAGAGCATCCGTCTGGGCAGAGATCCTGCCCTCAATACTGTTTCGTACAGACTTTACCAATGCCCAAGACGAGCCGGACGAAATGTCTTCGAAATTACACCGACGCTCGAGTTTCCAACCGGCGTTCCAAGTGGGAGTAGCATACAGGGTATCCGATCACATGGGTATAGAAGCTCATGCAGGGTATCAGCTTGGCGAGGCAGTATACCATCTTATGGAGGAAACATCCACTTGGTCGATCATCAAAAAGAGAGCTACCGTACCTTACCGGGGATTTGAGTTTGCAGTCGGACTACAATTCTATCCTTTCCGC","10.20","13.71","49430","MNRESFLLLLVLLFALPLHLQASSPCNNMADTTCISDSAKMFPPAIGVYHVKPMKNTLRHSLPLVAASLLTFNVDDNIRELRFTGAGSFHTKIDNVSQLVPLMAQLSMRGFGYKGRSKSWGKMLVSDALGMALMGGMVNAGKYSFGRLRPDGTAANSYPSGHTATAFACATLFHLEYGSRSPWYSAAGYTVASLTGISRIVNNRHWASDVLCGAAVGILVGELGYWISDLIFRDPTGYNYKLTKKQEGTLESMVISLSTGNRYINRQMDFEGKTVERTDAFGMNLKTTFNPSFARWVRIGSQFSVSTEKQKVLTRERPAKVFVAPAISLGLSAGVEWHPWQRASVWAEILPSILFRTDFTNAQDEPDEMSSKLHRRSSFQPAFQVGVAYRVSDHMGIEAHAGYQLGEAVYHLMEETSTWSIIKKRATVPYRGFEFAVGLQFYPFR","1859958 1861292","TIGR ID: PG1773","hypothetical protein","Outer membrane, Inner membrane, Extracellular","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR000326
Family
Phosphoesterase, PA-phosphatase related
PF01569\"[123-233]TPAP2
SM00014\"[124-225]TacidPPc
InterPro
IPR008934
Family
Acid phosphatase/vanadium-dependent haloperoxidase
SSF48317\"[37-236]TAcPase_VanPerase
noIPR
unintegrated
unintegrated
G3DSA:1.20.144.10\"[157-220]TG3DSA:1.20.144.10
PTHR14969\"[116-233]TPTHR14969
PTHR14969:SF3\"[116-233]TPTHR14969:SF3


","BeTs to 7 clades of COG0671COG name: Predicted phosphatasesFunctional Class: RThe phylogenetic pattern of COG0671 is -mtkYq-cEBrhUJ---l--xNumber of proteins in this genome belonging to this COG is 3","***** PF01569 (PAP2 superfamily) with a combined E-value of 4.6e-11. PF01569C 157-171 PF01569D 198-217","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Mar 1 16:20:05 MST 2001","","Thu Mar 1 16:20:05 MST 2001","Thu Mar 1 16:20:05 MST 2001","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 16:20:05 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 106 to 233 (E-value = 2.3e-18) place PG1548 in the PAP2 family which is described as PAP2 superfamily (PF01569)","Thu Mar 1 16:20:05 MST 2001","34541396","","","","","","1","","","PG1773" "PG1549","1864640","1861275","3366","ATGATCAAATCTCCCCAACCAATCGATATTCTTTCCCTCTTTCGCCGGCACAATGGTGTGCAGGCTTTGATGAAAGCCCTCGACCGAGAGAAGTGCGTAGCTCTCGACGGGCTTTGCGGGTCGTCGGCAGCTCTTATAGTGAAACTGCTGCACGAATCCGGTCGCCCTGTCCTTTGCATTGCTTCGGATATGGAAGAAGCCGGCTATCTCTTCTCCGATTTGGAGCAACTCGGAGGAGAGGGTAGTGCACTTTTTTTCCCTTCCTCCTATAAGCGTGCTATCAAATACGGGCATACCGATGCGGCACAACAGGTGCTTCGTGCCGAGGCTTTGGCCGCTCTTTCGATGGAGGGTAGCTGTCCGCTTGTCGTCTCTTATCCCGAAGCCGTGGCCGAACGCGTGGTCGCCGGCGATATACTGGAGAAAGAGATGCACAGCATCCGTCAGGGAGACAGGTTGGATCGGGATTTTCTCAGAGATCTTCTATTGGAATGGGGCTTCGAACGAACCGATTACGTTTATGAGCCGGGGCAATTTGCCGTACGAGGCAGTTTGCTGGATGTATTTTCTTTCAGTCGCGAGCTACCGGTACGTATCGACTTCTTCGACGACGAGATAGAAAGCATCCGTCTCTTCGAGGTGGAGAGTCAGCTCTCGGTGGGGACGCTGTCGGAGGTCGTACTGATGCCTGATGTGGCAGGAGATGTTCGTGCCGAGGAGTGTTTGCTCGGTTTATTCCCGAAGAATACGATCATCGTATTGCCGGACAGACCGTTTTTGGAGGATCGTCTGCAAATGGTATTTACCGATGCTCCGCTCTTCGATGACGGCGAAGGATTCGAATCGCTCGTAGCCATGCAGGAGCGGCTCACATCGCCTAAGGAGCTGATGGATAAATTGAATGACTTCACGACCATCGCCACCGGCAGCGGCAGGAGCGGCAATTACCGTATCGGCTTCAAGACCCAACCGCAGCCTTTGTTCCACAAGAATTTCGATCTGCTCATCGATCAACTGGAGCAATGGCGAGATGCCGGCTACAGAATGCTTTTGGCCACAGCCTCGGATAAGCAATACGAGAGAGTGGAAGAGATCCTTTCCGAGCGTGGAAGCTCTTCGCTCCTTCCGAAAAGAGTATCGCTCACCTTACATGAGGGTTTTTCGGACGAAGCTCTTCGGATCGTTCTGCTTACGGATCACCAGCTTTTCGATCGTTACCACAAATACAATCTCAAAAGCGACAAAGCCCGTTCGGGGAAAGTGACCCTCTCACTGAAGGAGCTGAACCAATTCTCTCAAGGCGACTATATCGTGCATATCGATCACGGTATCGGCCGGTTCGGAGGCCTTATCACGACCGATGTGGGAGGGAAGCGGCAGGAAGTAATCAAACTCATTTACCGAAATAACGATATAATATTCGTCAATCTGCACAGCCTCCATAAGTTGTCCAAATACAAAGGTGGTGACAGTGATGCGCAGGTAGAACTGAGTCGTCTCGGGACGGGAGCCTGGCAAAAGCTCAAAGAGAGGACCAAAAAGCGTGTCAAGGATATTGCTCGCGATCTGATCCGGCTCTATGCCCAAAGGAAAGAAGAGCGAGGCTTTGCATTCAGTCCGGACAGCTACCTACAGCACGAATTGGAAGCCTCTTTCCTGTACGAAGATACGCCCGATCAGGAGCGTGCCACGGCAGAGGTAAAAGCCGATATGGAAAGCGATCGTCCGATGGATCGGCTTATCTGCGGCGATGTCGGTTTCGGCAAGACGGAAGTGGCTGTTCGTGCCGCATTCAAAGCCGCCACAGACGGCAAACAGGTAGCGATACTGGTGCCGACTACCGTACTGGCCTATCAGCACTATCAGACGTTCAGGGACAGATTGCAAAATTTCCCCGTGCGTATCGAATACATATCCCGCGCCCGTTCGGCCAAGGATATTAAAGCGATTCTGCACGATCTGGCAGAAGGTCGGATCGATATAATTATAGGTACGCACAGGCTCGTGAGCAACGATATCAGATTCCATGACCTCGGCCTCCTTGTGATCGATGAAGAACAGAAATTCGGTGTGGCAGTAAAAGAAAAGCTGCGCAAACTACAGGTCAATGTCGATACGCTGACCATGTCTGCTACACCTATCCCCCGTACTTTGCAATTCTCTCTGATGGGAGCACGCGACCTCTCGAATATCAACACCCCACCGCCGAATCGCTATCCCGTTGCCACCGAACTGGCACGATTCAGCCCCGACATTGTTCGGGAAGCTGTCAATTTCGAGATGTCCCGCAACGGACAGGTCTTTATCGTCCACAACCGAATAGATAATATAGAAGAGATCGCCGGCATAGTACAACGTGAAGTCCCCGATGCACGCGTGGCAGTGGGGCATGGCCGTATGTCGCCCACAGAACTGGAACGACTTATCCTCGATTTTGTTCATTACGAATATGATGTGTTGGTCGCAACTACAATCATTGAAAATGGTATCGATGTGCCCAATGCCAATACCATTATCATTGACGATGCCCACCGATACGGTCTGAGTGAGTTGCACCAGCTTCGCGGACGTGTGGGACGGAGCAACAGGAAAGCCTTTTGCTATCTTTTGAGTCCGCCGCTCAGTGTCCTGAGCGACGATTCGCGCCGTCGGCTCCAAGCCATAGAGAACTTCAGCGACCTCGGCAGCGGTATTCGCATTGCTCTTCAGGATTTGGATATACGTGGTGCCGGCAATGTACTCGGTGCCGAGCAGAGCGGATTCATTGCCGATTTGGGATATGAGACGTATAGTAAGGTTTTTAATGAAGCCGTTTCCGAACTCAAAGCGGATGAGTTTGCCGATCTTTATGCAGAGAGCCAAGAAGCTATTCCTTCAGCTTCCCGGTTTGTAGTGGAGACAACGGTCGAGAGCGATTTGGAACTTTCCTTCCCCGAAGAATATGTGCCGTTGGATTCGGAACGCATTCTTCTTTATCGGGAGTTGGACAATCTCTCCACGGACGAGGAGCTCGATGCATTCCGGCGCCGTATGCAGGATCGTTTCGGTAAAATTCCGCCGGAGGGAGAGGAGTTGATACGGGTACCTCGCCTGCGACGCCTCGGCCGTTCGCTCGGTATAGAGAAGATCGTATTGCGTGGGGACCAGATGAGTTTCCATCTGGTCGGCAAGGAAGACAGCCCTTACTATCAGAGCGAAGTCTTTGGCATGTTGTTGGAATATATCGCAGCGCACACACGTCGGTGCGAGATTCGTCAGTCCGGAGGAAAGAGGATCGTTCGCTTGCGCGAGGTGCCCGATGTGCTCACCGCTTGTGAACTCTGTACAGCCATTTCCACTCGATCGTCAGCGGAAAGGATAGAATTG","5.30","-28.52","126746","MIKSPQPIDILSLFRRHNGVQALMKALDREKCVALDGLCGSSAALIVKLLHESGRPVLCIASDMEEAGYLFSDLEQLGGEGSALFFPSSYKRAIKYGHTDAAQQVLRAEALAALSMEGSCPLVVSYPEAVAERVVAGDILEKEMHSIRQGDRLDRDFLRDLLLEWGFERTDYVYEPGQFAVRGSLLDVFSFSRELPVRIDFFDDEIESIRLFEVESQLSVGTLSEVVLMPDVAGDVRAEECLLGLFPKNTIIVLPDRPFLEDRLQMVFTDAPLFDDGEGFESLVAMQERLTSPKELMDKLNDFTTIATGSGRSGNYRIGFKTQPQPLFHKNFDLLIDQLEQWRDAGYRMLLATASDKQYERVEEILSERGSSSLLPKRVSLTLHEGFSDEALRIVLLTDHQLFDRYHKYNLKSDKARSGKVTLSLKELNQFSQGDYIVHIDHGIGRFGGLITTDVGGKRQEVIKLIYRNNDIIFVNLHSLHKLSKYKGGDSDAQVELSRLGTGAWQKLKERTKKRVKDIARDLIRLYAQRKEERGFAFSPDSYLQHELEASFLYEDTPDQERATAEVKADMESDRPMDRLICGDVGFGKTEVAVRAAFKAATDGKQVAILVPTTVLAYQHYQTFRDRLQNFPVRIEYISRARSAKDIKAILHDLAEGRIDIIIGTHRLVSNDIRFHDLGLLVIDEEQKFGVAVKEKLRKLQVNVDTLTMSATPIPRTLQFSLMGARDLSNINTPPPNRYPVATELARFSPDIVREAVNFEMSRNGQVFIVHNRIDNIEEIAGIVQREVPDARVAVGHGRMSPTELERLILDFVHYEYDVLVATTIIENGIDVPNANTIIIDDAHRYGLSELHQLRGRVGRSNRKAFCYLLSPPLSVLSDDSRRRLQAIENFSDLGSGIRIALQDLDIRGAGNVLGAEQSGFIADLGYETYSKVFNEAVSELKADEFADLYAESQEAIPSASRFVVETTVESDLELSFPEEYVPLDSERILLYRELDNLSTDEELDAFRRRMQDRFGKIPPEGEELIRVPRLRRLGRSLGIEKIVLRGDQMSFHLVGKEDSPYYQSEVFGMLLEYIAAHTRRCEIRQSGGKRIVRLREVPDVLTACELCTAISTRSSAERIEL","1864667 1861275","TIGR ID: PG1774","transcription repair coupling factor (TRCF) helicase","Cytoplasm","Numerous significant hits to transcription-repair coupling factor proteins in gapped BLAST; e.g. residues 8-1096 are 35% similar to gb|AAK04111.1|AE006240_9 transcription-repair coupling factor of Lactococcus lactis subsp. lactis, residues 318-1044 and 21-230 are 42% and 33% similar (respectively) to fragments (residues 380-1099 and 15-226) of dbj|BAB03788.1| transcription-repair coupling factor (TRCF) of Bacillus halodurans, residues 17-1060 are 35% similar to emb|CAC09550.1| putative transcriptional-repair coupling factor of Streptomyces coelicolor.This sequence corresponds to BT0252.","
InterPro
IPR001650
Domain
Helicase, C-terminal
PF00271\"[785-862]THelicase_C
SM00490\"[778-862]THELICc
PS51194\"[751-906]THELICASE_CTER
InterPro
IPR003711
Domain
Transcription factor CarD
PF02559\"[430-528]TCarD_TRCF
InterPro
IPR004576
Family
Transcription-repair coupling factor
TIGR00580\"[162-1044]Tmfd
InterPro
IPR005118
Domain
TRCF
PF03461\"[972-1072]TTRCF
InterPro
IPR011545
Domain
DEAD/DEAH box helicase, N-terminal
PF00270\"[557-721]TDEAD
InterPro
IPR014001
Domain
DEAD-like helicases, N-terminal
SM00487\"[552-742]TDEXDc
InterPro
IPR014021
Domain
Helicase superfamily 1 and 2 ATP-binding
PS51192\"[570-731]THELICASE_ATP_BIND_1
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[143-231]T\"[541-741]T\"[763-873]TG3DSA:3.40.50.300
PTHR10967\"[758-839]TPTHR10967
PTHR10967:SF48\"[758-839]TPTHR10967:SF48
SSF52540\"[8-253]TSSF52540


","BeTs to 10 clades of COG1197COG name: Transcription-repair coupling factor - helicase of superfamily IIFunctional Class: L,KThe phylogenetic pattern of COG1197 is ------vcebrhuj--olinxNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 551-631 are 65% similar to a (HELICASE ATP-BINDING RNA-BINDING PROTEIN RNA) protein domain (PD000085) which is seen in MFD_BACSU.Residues 883-933 are 58% similar to a (DNA HELICASE REPAIR ATP-BINDING) protein domain (PD008437) which is seen in MFD_BACSU.Residues 770-868 are 55% similar to a (HELICASE PROTEIN POLYPROTEIN ATP-BINDING RNA RNA-BINDING) protein domain (PD000033) which is seen in MFD_BACSU.Residues 752-920 are 31% similar to a (ATP-DEPENDENT DNA HELICASE RECG) protein domain (PD099794) which is seen in RECG_HELPY.Residues 638-749 are 53% similar to a (HELICASE DNA REPAIR ATP-BINDING) protein domain (PD003500) which is seen in MFD_BACSU.Residues 964-1049 are 31% similar to a (TRANSCRIPTION-REPAIR COUPLING FACTOR TRCF) protein domain (PD105103) which is seen in MFD_SYNY3.Residues 166-541 are 24% similar to a (REPAIR DNA ATP-BINDING SUBUNIT B ABC EXCINUCLEASE) protein domain (PD002798) which is seen in MFD_ECOLI.","","Thu Jun 14 12:14:16 MDT 2001","","Thu Jun 14 12:14:16 MDT 2001","Thu Jun 14 12:14:16 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:14:16 MDT 2001","Thu Jun 14 12:14:16 MDT 2001","","","Fri Mar 16 08:45:01 MST 2001","Tue Dec 2 15:59:46 2003","Fri Mar 16 08:45:01 MST 2001","","Tue Jun 26 09:49:44 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 503-920 show 34% similarity to PG0320, ATP-dependent DNA helicase. Residues 37-230 show 25% similarity to PG0346, excinuclease ABC subunit B and residues 548-906 show 23% similarity to PG1835, DEAD BOX-related helicase (ATP-dependent helicase).","Tue Jun 26 09:49:44 MDT 2001","Fri Mar 16 08:45:01 MST 2001","-53% similar to PDB:2EYQ Crystal structure of Escherichia coli transcription-repair coupling factor (E_value = 6.1E_168);-56% similar to PDB:1GM5 STRUCTURE OF RECG BOUND TO THREE-WAY DNA JUNCTION (E_value = 6.5E_69);-46% similar to PDB:2B2N Structure of transcription-repair coupling factor (E_value = 2.1E_14);","","","Residues 430 to 528 (E-value = 6.2e-34) place PG1549 in the CarD_TRCF family which is described as CarD-like/TRCF domain (PF02559)Residues 546 to 742 (E-value = 2.2e-32) place PG1549 in the DEAD family which is described as DEAD/DEAH box helicase (PF00270)Residues 785 to 862 (E-value = 1.9e-19) place PG1549 in the Helicase_C family which is described as Helicase conserved C-terminal domain (PF00271)Residues 972 to 1072 (E-value = 3.7e-11) place PG1549 in the TRCF family which is described as TRCF domain (PF03461)","Tue Dec 2 15:59:46 2003","34541397","","","","","","1","","","PG1774" "PG1549.1","1864948","1864676","273","ATGTTGATGCGGTCGAAAAGGGTTGTTCGCCTTTTATCGACACAAATGTACACTGTATTAACTACAAAAACTGCTCCACTCTATGGCACCGGCTCTAAATGGACTATCGTGCTGATGTTAATTATGTCGAAACATTTGACCGATTCCGAGCATCAACTTTTTCGGTGCACGTCACGTTTTCAAGAAGGACAAAAGAGAAAAATCTTGCGCATAAACCAACCCGTGCAATCTGATTTGGCCGGAACTTTAGGATGGATCGTAATATCGTTTCGC","","","10526","MLMRSKRVVRLLSTQMYTVLTTKTAPLYGTGSKWTIVLMLIMSKHLTDSEHQLFRCTSRFQEGQKRKILRINQPVQSDLAGTLGWIVISFR","","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
noIPR
unintegrated
unintegrated
signalp\"[1-24]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG1550","1864987","1865568","582","ATGAACAAGCAAAAAAACAATCGCGAACGAACGCCTCAGCCCGAACAGGATACCGAAAGAGACGAACAACTGACAAACAGTCACGAAAATGATATAGATAGTGCCCCCGCAGCCGAAGAGAACGACAAGGTGGCAGACCCGGTGGAGCAGCTCACGGCTCAGTTGGCTGCTCTTAACGACACCCATCTGCGTTTGATGGCAGAATATGACAACTACCGCAAGCGGACACTCAAGGAAAAGAGCGAACTTATCCGCAATGGAGGAGAAAAGGTGCTCGTGGATCTGCTGCCCGTGATCGACGACTTCGAGCGCGCCCTCAGCAATCTGGGCGACATGTCGGAGCCTGCTGCCATCAAAGAAGGAGTGGAACTGATCTACAGCAAGTTCATGGACTATCTGCAGAAGCAGGGTGTCAAAAAGATAGAAACCGCAGACCTGCCATTCGATGCCGACCTCTGCGATGCCGTAGCCATGATCCCGGCACCTTCGGCCGAGCAGAAAGGTAAGGTAATAGACTGTGTAAAGACGGGCTATACGCTCAACGACAAAGTGATACGTCACGCTCATGTGGTGGTGGGAGAA","4.60","-12.11","21748","MNKQKNNRERTPQPEQDTERDEQLTNSHENDIDSAPAAEENDKVADPVEQLTAQLAALNDTHLRLMAEYDNYRKRTLKEKSELIRNGGEKVLVDLLPVIDDFERALSNLGDMSEPAAIKEGVELIYSKFMDYLQKQGVKKIETADLPFDADLCDAVAMIPAPSAEQKGKVIDCVKTGYTLNDKVIRHAHVVVGE","1864987 1865568 [Shadowed by 2003]","From Prosite PD0C00822:In prokaryotes the grpE protein [1] stimulates, jointly with dnaJ, the ATPase activity of the dnaK chaperone. It seems to accelerate the release of ADP fromdnaK thus allowing dnaK to recycle more efficiently. GrpE is a protein of about 22 to 25 Kd. In yeast, an evolutionary related mitochondrial protein (gene GRPE) has been shown [2] to associate with the mitochondrial hsp70 protein and to thus play a role in the import of proteins from the cytoplasm.TIGR ID: PG1775","GrpE-related chaperonin; HSP-70 cofactor","Cytoplasm","Significant hits with gapped BLAST to GRPE / HSP 70 cofactor proteins; e.g. residues 1-192 are 33% similar to GRPE protein (L43367) of Francisella tularensis, residues 15-192 are 35% similar to grpE protein (M74569) of Clostridium acetobutylicum,26-194 are 29% similar to Grpe like protein (L25105) of Chlamydia trachomatis.","
InterPro
IPR000740
Family
GrpE nucleotide exchange factor
PR00773\"[63-79]T\"[91-106]T\"[145-160]T\"[173-192]TGRPEPROTEIN
PTHR21237\"[15-194]TGrpE
PF01025\"[32-194]TGrpE
PS01071\"[148-192]TGRPE
InterPro
IPR009012
Domain
GrpE nucleotide exchange factor, head
G3DSA:2.30.22.10\"[137-194]TGrpE_head
SSF51064\"[138-194]TGrpE_head
InterPro
IPR013805
Domain
GrpE nucleotide exchange factor, coiled-coil
G3DSA:3.90.20.20\"[34-135]TGrpE_coiled_coil
noIPR
unintegrated
unintegrated
PTHR21237:SF3\"[15-194]TPTHR21237:SF3


","BeTs to 14 clades of COG0576COG name: Molecular chaperone GrpE (heat shock protein)Functional Class:  OThe phylogenetic pattern of COG0576 is --t-yqvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB000740 (GrpE protein) with a combined E-value of 4.5e-33. IPB000740A 60-105 IPB000740B 145-156 IPB000740C 168-192","Residues 60-135 are 42% similar to a (CHAPERONE GRPE PROTEIN HEAT) protein domain (PD002432) which is seen in GRPE_CLOAB.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Tue Apr 18 10:34:01 MDT 2000","Wed Mar 22 11:15:54 MST 2000","Tue Apr 18 10:32:13 MDT 2000","Wed Mar 22 11:15:54 MST 2000","Tue Apr 18 10:32:13 MDT 2000","Tue Apr 18 10:32:13 MDT 2000","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Tue Apr 18 10:32:13 MDT 2000","","-53% similar to PDB:1DKG CRYSTAL STRUCTURE OF THE NUCLEOTIDE EXCHANGE FACTOR GRPE BOUND TO THE ATPASE DOMAIN OF THE MOLECULAR CHAPERONE DNAK (E_value = 1.1E_17);-50% similar to PDB:1I3Q RNA POLYMERASE II CRYSTAL FORM I AT 3.1 A RESOLUTION (E_value = 1.1E_17);-50% similar to PDB:1I50 RNA POLYMERASE II CRYSTAL FORM II AT 2.8 A RESOLUTION (E_value = 1.1E_17);-50% similar to PDB:1I6H RNA POLYMERASE II ELONGATION COMPLEX (E_value = 1.1E_17);-50% similar to PDB:1K83 Crystal Structure of Yeast RNA Polymerase II Complexed with the Inhibitor Alpha Amanitin (E_value = 1.1E_17);","","","Residues 35 to 194 (E-value = 7.1e-40) place PG1550 in the GrpE family which is described as GrpE (PF01025)","","34541398","","","Harrison CJ, Hayer-Hartl M, Di Liberto M, Hartl F, Kuriyan J. Crystal structure of the nucleotide exchange factor GrpE bound to the ATPase domain of the molecular chaperone DnaK. Science 1997 Apr 18;276(5311):431-5. PubMed: 9103205. ","","Tue Apr 18 10:32:13 MDT 2000","1","","","PG1775" "PG1552","1865614","1866762","1149","ATGGCAGAAAAAAGAGACTATTACGAAGTCCTCGGTGTATCGAAGAATGCCACCGACGATGAACTGAAAAAAGCATATCGCAAGAAGGCTATCCAATACCATCCTGATAAGAACCCCGGTGACAAGGAGGCCGAAGAGCACTTCAAAGAGGTAGCTGAAGCCTACGACGTATTGAGCGATCCGCAGAAGCGCAGTCAATATGACCAGTTCGGCCATGCCGGATTGGGCGGAGCTGCCGGTGGAGGTTTCAGCGGAGGCGGTATGTCCATGGAGGATATTTTCAGTCGCTTCGGTGATCTATTCGGTGGGTTCGGCGGTTTCGGCGGATTCTCCGATATGGGCGGTGGCAGTCGCAGACGTGTTCGCAGAGGGTCTGACCTGCGAGTACGAGTGAAGCTTTCTTTGGCCGATATAAGTAAAGGTGTGGAGAAGAAAGTGAAGGTAAAAAAGCAGGTAGTGTGCAGCAAATGTCGTGGCGATGGCACGGAAGAAGCCAATGGCAAGACTACCTGCCAGACCTGCCATGGAACCGGCGTGGTTACACGTGTGAGCAACACTTTCCTTGGGGCCATGCAGACCCAGAGCACTTGTCCCACTTGCCACGGAGAGGGTGAGATCATCACGAAGCCATGCTCCAAGTGTAAGGGCGAAGGTGTGGAGATCGGCGAAGAGGTGATCTCATTCCACATCCCTGCCGGTGTAGCCGAAGGAATGCAAATGTCCGTGAACGGCAAGGGAAATGCCGCGCCCCGAGGAGGCGTGAATGGCGACTTGATAGTCGTGATCGCCGAGGAACCGGATCCGAATCTGATCCGCAATGGCAACGATCTGATATACAATCTGCTTATATCCGTTCCGTTGGCTATAAAAGGAGGTAGTGTGGAAGTGCCGACGATAGACGGACGAGCCAAGATCCGCATCGAGGCGGGGACACAACCCGGCAAGATGCTGCGTTTGCGCAATAAGGGGTTGCCCAGCGTAAACGGCTATGGCATGGGAGACCAACTGGTGAATGTCAATGTCTATATCCCCGAATCGATCGATGCCAAAGATGAGCAGGCTATCGCAGCGATGGAAAACTCGGACAGCTTCAAACCTACCGATGCTGCTCGTAAGGATATAGACAAGAAATACAGAGAGATGCTGGAT","7.30","1.10","41095","MAEKRDYYEVLGVSKNATDDELKKAYRKKAIQYHPDKNPGDKEAEEHFKEVAEAYDVLSDPQKRSQYDQFGHAGLGGAAGGGFSGGGMSMEDIFSRFGDLFGGFGGFGGFSDMGGGSRRRVRRGSDLRVRVKLSLADISKGVEKKVKVKKQVVCSKCRGDGTEEANGKTTCQTCHGTGVVTRVSNTFLGAMQTQSTCPTCHGEGEIITKPCSKCKGEGVEIGEEVISFHIPAGVAEGMQMSVNGKGNAAPRGGVNGDLIVVIAEEPDPNLIRNGNDLIYNLLISVPLAIKGGSVEVPTIDGRAKIRIEAGTQPGKMLRLRNKGLPSVNGYGMGDQLVNVNVYIPESIDAKDEQAIAAMENSDSFKPTDAARKDIDKKYREMLD","1865614 1866762","TIGR ID: PG1776","DnaJ protein","Cytoplasm, Extracellular","Numerous significant hits to DnaJ / heat shock proteins with gapped BLAST; e.g. residues 4-355 are 36% similar to DnaJ protien (AF007813) of Leptospira interrogans, residues 6-364 are 33% similar to heat shock protein J (AE001307) of Chlamydia trachomatis, residues 5-359 are 32% similar to dnaJ2 protein (Z95208) of Mycobacterium tuberculosis.This sequence is similar to BT1244. ","
InterPro
IPR001305
Domain
DnaJ central region
PF00684\"[141-225]TDnaJ_CXXCXGXG
PS51188\"[141-223]TZF_CR
InterPro
IPR001623
Domain
Heat shock protein DnaJ, N-terminal
PF00226\"[6-68]TDnaJ
SM00271\"[5-63]TDnaJ
PS00636\"[48-67]TDNAJ_1
PS50076\"[6-71]TDNAJ_2
SSF46565\"[1-114]TDnaJ_N
InterPro
IPR002939
Domain
Chaperone DnaJ, C-terminal
PF01556\"[238-359]TDnaJ_C
InterPro
IPR003095
Family
Heat shock protein DnaJ
PR00625\"[17-36]T\"[48-68]T\"[146-165]T\"[171-181]T\"[189-207]T\"[209-224]T\"[228-244]T\"[274-291]TDNAJPROTEIN
InterPro
IPR008971
Domain
HSP40/DnaJ peptide-binding
SSF49493\"[119-268]T\"[269-356]THSP40_DnaJ_pep
InterPro
IPR012724
Family
Chaperone DnaJ
TIGR02349\"[6-362]TDnaJ_bact
InterPro
IPR015609
Family
Molecular chaperone, heat shock protein, Hsp40, DnaJ
PTHR11821\"[1-346]THsp40/DnaJ_Rel
noIPR
unintegrated
unintegrated
G3DSA:1.10.287.110\"[5-77]TG3DSA:1.10.287.110
G3DSA:2.10.230.10\"[141-223]TG3DSA:2.10.230.10
G3DSA:2.60.260.20\"[267-356]TG3DSA:2.60.260.20
PTHR11821:SF79\"[1-346]TPTHR11821:SF79
SSF57938\"[141-223]TSSF57938


","BeTs to 14 clades of COG0484COG name: Molecular chaperones, DnaJ family (contain C-terminal Zn finger domain)Functional Class: OThe phylogenetic pattern of COG0484 is --t-YQVCebRhUjGPOLinxNumber of proteins in this genome belonging to this COG is 1","***** IPB001623 (DnaJ domain) with a combined E-value of 4.4e-41. IPB001623A 7-38 IPB001623B 46-71","Residues 6-69 are 67% similar to a (PROTEIN CHAPERONE DNAJ HEAT SHOCK DNA REPLICATION) protein domain (PD000231) which is seen in DNJH_SYNY3.Residues 274-355 are 45% similar to a (PROTEIN CHAPERONE DNAJ HEAT SHOCK DNA REPLICATION REPEAT) protein domain (PD000601) which is seen in O69269_BACSH.Residues 157-214 are 51% similar to a (PROTEIN CHAPERONE DNAJ DNA REPLICATION HEAT SHOCK REPEAT) protein domain (PD000802) which is seen in DNAJ_METTH.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Mar 22 10:01:12 MST 2000","Thu Dec 4 12:09:47 2003","Tue May 22 16:13:21 MDT 2001","Tue May 22 16:13:21 MDT 2001","Tue May 22 16:13:21 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue May 22 16:13:21 MDT 2001","-85% similar to PDB:1BQ0 J-DOMAIN (RESIDUES 1-77) OF THE ESCHERICHIA COLI N-TERMINAL FRAGMENT (RESIDUES 1-104) OF THE MOLECULAR CHAPERONE DNAJ, NMR, 20 STRUCTURES (E_value = 5.8E_21);-85% similar to PDB:1BQZ J-DOMAIN (RESIDUES 1-77) OF THE ESCHERICHIA COLI N-TERMINAL FRAGMENT (RESIDUES 1-78) OF THE MOLECULAR CHAPERONE DNAJ, NMR, 20 STRUCTURES (E_value = 5.8E_21);-85% similar to PDB:1XBL NMR STRUCTURE OF THE J-DOMAIN (RESIDUES 2-76) IN THE ESCHERICHIA COLI N-TERMINAL FRAGMENT (RESIDUES 2-108) OF THE MOLECULAR CHAPERONE DNAJ, 20 STRUCTURES (E_value = 5.8E_21);-86% similar to PDB:1HDJ HUMAN HSP40 (HDJ-1), NMR (E_value = 2.7E_18);-79% similar to PDB:2CTP Solution structure of J-domain from human DnaJ subfamily B menber 12 (E_value = 5.0E_17);","","","Residues 6 to 71 (E-value = 2.7e-43) place PG1552 in the DnaJ family which is described as DnaJ domain (PF00226)Residues 141 to 225 (E-value = 3.9e-22) place PG1552 in the DnaJ_CXXCXGXG family which is described as DnaJ central domain (4 repeats) (PF00684)Residues 238 to 359 (E-value = 7.8e-45) place PG1552 in the DnaJ_C family which is described as DnaJ C terminal region (PF01556)","Thu Dec 4 12:09:47 2003","34541399","","","","","","1","","","PG1776" "PG1553","1866851","1867165","315","ATGAACAACGAATTTTTGCAGACAGAAGAGGATATTGTCCGTATGCTGCGTACAGTATACGACCCCGAAATACCGGTCAATGTGTACGATCTGGGGTTGATATACAATGTGGACGTAGGAGCCGACGGGTTCGTTACCGTCACCATGACACTGACGGCACCGAATTGTCCTGCAGCAGACTTCATCATAGAGGATGTTCGCATGAAGGTGGAAAGCGTGAAAGGCGTCAAGGGGGTAAAGATAGACCTGACCTTCGAACCCGAATGGAATAAGGACATGATGAGCGAAGAAGCCATGCTGGAGCTTGGATTCCTC","3.90","-12.05","11864","MNNEFLQTEEDIVRMLRTVYDPEIPVNVYDLGLIYNVDVGADGFVTVTMTLTAPNCPAADFIIEDVRMKVESVKGVKGVKIDLTFEPEWNKDMMSEEAMLELGFL","1866851 1867165","TIGR ID: PG1777","conserved hypothetical protein","Cytoplasm","Residues 6-102 have 40% similarity to AE002050, D. radiodurans conserved hypothetical protein.Residues 9-103 have 41% similarity to AE004019, X. fastidiosa hypothetical protein. Residues 8-105 have 40% similarity to AP000001, P. horikoshii 176aa long hypothetical protein.","
InterPro
IPR002744
Domain
Protein of unknown function DUF59
PD005595\"[8-97]TDUF59
PF01883\"[8-83]TDUF59


","BeTs to 6 clades of COG2151COG name: Putative aromatic ring hydroxylating enzymeFunctional Class: RThe phylogenetic pattern of COG2151 is -mtk--v-ebr----------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 8-98 are 40% similar to a (PROTEIN MRP HOMOLOG ATP-BINDING) protein domain (PD005595) which is seen in O58049_PYRHO.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Mar 1 16:24:24 MST 2001","Thu Mar 1 16:24:24 MST 2001","Thu Mar 1 16:24:24 MST 2001","","Thu Mar 1 16:24:24 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 16:24:24 MST 2001","-52% similar to PDB:1UWD CONSERVED HYPOTHETICAL PROTEIN TM0487 FROM THERMOTOGA MARITIMA (E_value = 1.3E_12);-52% similar to PDB:1WCJ CONSERVED HYPOTHETICAL PROTEIN TM0487 FROM THERMOTOGA MARITIMA (E_value = 1.3E_12);-54% similar to PDB:2CU6 Crystal Structure Of The dTDP-4-keto-L-rhamnose reductase-related Protein From Thermus Thermophilus HB8 (E_value = 9.3E_11);-50% similar to PDB:2IJP Crystal structure of a 14-3-3 protein from Cryptosporidium parvum (cgd1_2980) (E_value = 9.3E_11);","","","Residues 8 to 83 (E-value = 4.9e-33) place PG1553 in the DUF59 family which is described as Domain of unknown function DUF59 (PF01883)","Thu Mar 1 16:24:24 MST 2001","34541400","","","","","","1","","","PG1777" "PG1554","1867197","1867982","786","ATGCGTTCGAAGATCTACTTTACCAGCGATGCCCATCTCGGTTCGCGCCATCATGCCGATCCTATGACAGTGGAGAGGCGTTTGGCCGCTTGGTTGGAGCGTATTCGCCATGAGGCCAAGGCCATCTACTTCATGGGCGACATGTTCGACTATTGGTTCGAGTATCGGTATGTGGTGCCTCGTGGCTTCACGCGTTTCCTCGGGAAAGTAGCCGAATTGAGCGATGAGGGGGTGGAGATTCATTTCTTTGCCGGCAATCACGACGTATGGCTGACAGATTATTTGACCAAGGAGCTGGGTGCTCATGTCCATATGCATGGCATTACGGTGGAGTTGTCCGGCAAGCTCTTCCGCTTGGCACATGGAGATGAGGAGTATCGGTCTGTGAAGCGTTCGTACGACTGCATGTACCGCCTCTTCCGCAATCCGTTGGCACGCCTCCTTTATGCAGCCGTGCATCCTCGCTGGACAGTCGGTTTGGCCTATGGCATTTCACTGAAAAGCAGACGCAGCGGAGAGAAGCGAAAGACACTCGGCAATATCCCCCACGCCTACAGCAACGACTACTTCGATATAGAAAACGAATGGCTGATTCGCTTTGCCAAAGAGCATAGTGCCCGACATCCCGAAGTGGATTTCTATATTTTCGGCCATCGACATCTGCTGGTCGATATGGCATTGCGCGATGAGAAGCGTGTCCTGATCCTTGGCGATTGGATTCGTTACAACTCCTATGCCGTTTGGGATGGCACGACGCTTGTGCTCGAATCCATGGAGGACATGGAA","7.60","2.82","31014","MRSKIYFTSDAHLGSRHHADPMTVERRLAAWLERIRHEAKAIYFMGDMFDYWFEYRYVVPRGFTRFLGKVAELSDEGVEIHFFAGNHDVWLTDYLTKELGAHVHMHGITVELSGKLFRLAHGDEEYRSVKRSYDCMYRLFRNPLARLLYAAVHPRWTVGLAYGISLKSRRSGEKRKTLGNIPHAYSNDYFDIENEWLIRFAKEHSARHPEVDFYIFGHRHLLVDMALRDEKRVLILGDWIRYNSYAVWDGTTLVLESMEDME","1867155 1867982","TIGR ID: PG1778","conserved hypothetical protein","Cytoplasm","Residues 5-241 have 24% similarity to AE004605, P. aeruginosa conserved hypothetical protein. ","
InterPro
IPR004843
Domain
Metallophosphoesterase
PF00149\"[3-222]TMetallophos
noIPR
unintegrated
unintegrated
SSF56300\"[2-256]TSSF56300


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 7-239 are 25% similar to a (PROTEIN PURE-PPIB INTERGENIC REGION) protein domain (PD038423) which is seen in YBBF_HAEIN.","","Thu Jun 14 12:14:36 MDT 2001","","Thu Jun 14 12:14:36 MDT 2001","Thu Jun 14 12:14:36 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:14:36 MDT 2001","Thu Jun 14 12:14:36 MDT 2001","","","Thu Mar 1 16:27:07 MST 2001","Tue Jun 26 09:41:38 MDT 2001","Thu Mar 1 16:27:07 MST 2001","","Tue Jun 26 09:39:24 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 16:27:07 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 3 to 222 (E-value = 3.3e-08) place PG1554 in the Metallophos family which is described as Calcineurin-like phosphoesterase (PF00149)","Tue Jun 26 09:39:24 MDT 2001","34541401","","","","","","1","","","PG1778" "PG1555","1868067","1868558","492","ATGGGAAAGATAACAATCACGGTAGGCGATATTACTCGCTTCGAAGGAGATGCCATTGTCAATGCGGCGAATCATACCCTTTTGGGTGGAGGGGGAGTGGACGGAGCCATTCACCGAGCAGCCGGCCCCGAACTGCTGGAGGAGTGTCGCACTCTCAACGGTTGCCCTACGGGAGAAAGCAAAATAACGGGAGGATACAATCTGCCGGCGCAATACGTTATTCATACCGTAGGCCCTGTGTGGCATGGAGGGCAACATGGAGAGCCGGAGCTATTGGCTTCCTGCTACCGTACATCGCTGTCCATAGCTTTGGACAAGGGACTGAAATCCATTGCCTTCCCCTGCATCAGTACCGGCGTTTACCGTTATCCTAAAGATCAGGCCGCCCGCATTGCTTTGGCCACTATCGGGGAGATTATTGCAGATCGCCCCATTGACGTCACTATCGTGTGCTTCTCGGAAGCGGATAAGGAGTTTTATATCACACAGGAC","5.30","-5.04","17400","MGKITITVGDITRFEGDAIVNAANHTLLGGGGVDGAIHRAAGPELLEECRTLNGCPTGESKITGGYNLPAQYVIHTVGPVWHGGQHGEPELLASCYRTSLSIALDKGLKSIAFPCISTGVYRYPKDQAARIALATIGEIIADRPIDVTIVCFSEADKEFYITQD","1868016 1868558","TIGR ID: PG1779","conserved hypothetical protein","Cytoplasm","Residues 1-160 have 56% similarity to AE004789, P. aeruginosa conserved hypothetical protein.Residues 3-160 have 56% similarity to AF202922, H. sapiens LRP16 protein.Residues 4-144 have 55% simliarity to AE002061, D. radiodurans conserved hypothetical protein.","
InterPro
IPR002589
Domain
Appr-1-p processing
PF01661\"[20-132]TA1pp
SM00506\"[3-132]TA1pp
PS51154\"[1-164]TMACRO
noIPR
unintegrated
unintegrated
G3DSA:3.40.220.10\"[4-162]TG3DSA:3.40.220.10
PTHR11106\"[3-160]TPTHR11106
PTHR11106:SF3\"[3-160]TPTHR11106:SF3
SSF52949\"[2-163]TSSF52949


","BeTs to 6 clades of COG2110COG name: Predicted NA binding protein/domain related to histone macroH2A1Functional Class: RThe phylogenetic pattern of COG2110 is a--k-qv-e-r----------Number of proteins in this genome belonging to this COG is 1","***** PF01661 (Domain of unknown function) with a combined E-value of 8.9e-10. PF01661A 19-37 PF01661B 112-124 PF01661B 70-82","Residues 4-160 are 54% similar to a (POLYPROTEIN PROTEIN NONSTRUCTURAL) protein domain (PD002016) which is seen in Q44020_ALCEU.","","Thu Jun 14 12:14:56 MDT 2001","","Thu Jun 14 12:14:56 MDT 2001","Thu Jun 14 12:14:56 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:14:56 MDT 2001","Thu Jun 14 12:14:56 MDT 2001","","","Thu Mar 1 16:31:25 MST 2001","Tue Jun 26 09:36:53 MDT 2001","Thu Mar 1 16:31:25 MST 2001","Tue Jun 26 09:36:53 MDT 2001","Tue Jun 26 09:36:53 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 16:31:25 MST 2001","-62% similar to PDB:1SPV Crystal Structure of the Putative Phosphatase of Escherichia coli, Northeast Structural Genomoics Target ER58 (E_value = 1.1E_38);-57% similar to PDB:2DX6 Crystal structure of conserved hypothetical protein, TTHA0132 from Thermus thermophilus HB8 (E_value = 3.1E_25);-51% similar to PDB:1ZR3 Crystal structure of the macro-domain of human core histone variant macroH2A1.1 (form B) (E_value = 3.5E_16);-51% similar to PDB:2FXK Crystal structure of the macro-domain of human core histone variant macroH2A1.1 (form A) (E_value = 3.5E_16);-51% similar to PDB:1YD9 1.6A Crystal Structure of the Non-Histone Domain of the Histone Variant MacroH2A1.1. (E_value = 5.9E_16);","","","Residues 20 to 133 (E-value = 3.6e-51) place PG1555 in the A1pp family which is described as Appr-1\"-p processing enzyme family (PF01661)","Tue Jun 26 09:36:53 MDT 2001","34541402","","","","","","1","","","PG1779" "PG1556","1868929","1870113","1185","ATGGGAAAATTGTTACAGGATAAATTGGCTCAGTATACCGAGCCGCAAAAGGCACAAGCCGCAGGTATTTACCCTTATTTCAGAAAAATCGAAAGTGATCAGGATACCGAGGTCGTTATCGATGGTCGGAAAGTCCTCATGTTCGGCTCCAATGCATATCTGGGACTGACGAACCACCCGAAAGTCAAGGAGGCAGCTATCGAAGCGACAAAGAAGTACGGTACGGGCTGTGCCGGCTCCCGCTTCCTCAACGGCACACTCGATATTCACCTCGAACTGGAAAAACGGCTGGCCGAGTTCGTCGGCAAGGAAGATGCCATCAGCTTCTCTACCGGCTTCCAAGTGAATCTGGGCGTTGTCTCCTGCATCACCGGCCGCGAGGATTATATCATCTGGGACGAGTTGGATCATGCTTCGATCATCGAGGGTATTCGCCTTTCATTCAGCACGAAGTTAAAGTACAAGCATAATGATATGGGTTCTCTGGAGAAGCGGCTCCAGCAGTGCGACCCGGAGAAGATCAAACTGATTGTGGTCGATGGTGTCTTCAGTATGGAGGGTGATGTCTGCAATCTGCCCGAAATCGTTCGCCTCGCCAAGCGATACAACGCCAATGTGATGGTGGACGAAGCTCACGGTATCGGCGTGATGGGCGACCACGGACGCGGCGTCTGCAATCACTTCGGTCTGACCGACGAAGTGGACTTGATCATGGGTACTTTCAGCAAATCTTTCGCTTCGCTCGGAGGGTTTATTGCAGGAGACAAGAGCGTTATCAACTACCTGCGCCACCACGCCCGATCCTATATTTTCAGTGCCAGCTGTACGCCGGCCTCTACGGCAGCGGCAGCAGCTGCTCTGGACATTATGTTTAGCGAACCGGAGCGTTTAGCCCGATTGTGGGAGCTGACGCACTACTCATTGAACGCATTCCGCAGTCTTGGATTCGAAATAGGTCATACATCGACACCTATTATCCCGCTTTTTATCCGCAACAACGAGAAGACATTCCAAATAACCCGAGACGCTTTCGAAGAAGGGGTATTCGTCAATCCGGTGGTCTCTCCGGCGGTAGCTCCGTCCGACACCCTTATTCGCTTTTCACTCATGGCTACGCATACGAAGGAGCAACTCGACTTTGCCATCGAAAAGCTGCATAAGGTATTCAAGCAGAACGGTGTCCTG","6.60","-3.13","43782","MGKLLQDKLAQYTEPQKAQAAGIYPYFRKIESDQDTEVVIDGRKVLMFGSNAYLGLTNHPKVKEAAIEATKKYGTGCAGSRFLNGTLDIHLELEKRLAEFVGKEDAISFSTGFQVNLGVVSCITGREDYIIWDELDHASIIEGIRLSFSTKLKYKHNDMGSLEKRLQQCDPEKIKLIVVDGVFSMEGDVCNLPEIVRLAKRYNANVMVDEAHGIGVMGDHGRGVCNHFGLTDEVDLIMGTFSKSFASLGGFIAGDKSVINYLRHHARSYIFSASCTPASTAAAAAALDIMFSEPERLARLWELTHYSLNAFRSLGFEIGHTSTPIIPLFIRNNEKTFQITRDAFEEGVFVNPVVSPAVAPSDTLIRFSLMATHTKEQLDFAIEKLHKVFKQNGVL","1868929 1870113","From gi:6685543:Kbl of B. subtilis catalyzes the reaction Acetyl-CoA + Glycine = CoA + 2-amino-3-oxobutanoate, with a cofactor, pyridoxal phosphate. This reaction yields many names for the catalyst: 2-AMINO-3-KETOBUTYRATE COENZYME A LIGASE (AKB LIGASE) (GLYCINE ACETYLTRANSFERASE)From PubMed: 3117785:2-amino-3-ketobutyrate CoA ligase (also called aminoacetone synthetase or synthase) catalyzes the cleavage/condensation reaction between 2-amino-3-ketobutyrate (the presumed product of the L-threonine dehydrogenase-catalyzed reaction) and glycine + acetyl-CoA, and consists of two identical (or nearly identical) subunits.From gi:1705468:BioF of B. subtilis catalyzes the reaction: 6-carboxyhexanoyl-CoA + L-alanine = 8-amino-7-oxononanoate + CoA + CO2. This requires a co-factor, pyridoxal phosphate, and is the first step in biotin biosynthesis. This reaction yields many names for the catalyst: 8-AMINO-7-OXONONANOATE SYNTHASE (AONS) (8-AMINO-7-KETOPELARGONATE SYNTHASE) (7-KETO-8-AMINO-PELARGONIC ACID SYNTHETASE) (7-KAP SYNTHETASE) (L-ALANINE--PIMELYL COA LIGASE) (KAPA synthase).From PubMed: 2110099:Using 8.8 kb of genetic information from Bacillus sphaericus, it was possible to confer to Escherichia coli bio- strains, including delta bioA-D, bioC-, bioH-, the ability to convert exogenous pimelate into biotin. The 4.5-kb fragment contains genetic information for three different proteins, the products of bioX, bioW and bioF. Complementation studies using an E. coli bioF mutant and a B. subtilis bio112TG3 strain, revealed that the third ORF of this cluster encodes 7-keto-8-aminopelargonic acid synthetase. A combination of bioW and bioF allows an efficient complementation of E. coli bioC and bioH mutants, provided that pimelate is added to the biotin-depleted growth medium.... The gene order of this cluster is bioXWF. By sequence analysis, the two cloned DNA fragments were shown to bear overlapping open reading frames and secondary structures at their 3' ends, typical of transcription terminators.TIGR ID: PG1780","2-amino-3-ketobutyrate CoA ligase (AKB ligase) (glycine C-acetyltransferase)/ 8-amino-7-oxononanoate synthase (7-keto-8-amino-pelargonic acid synthase) (7-KAP synthase) (L-alanine-pimelyl CoA ligase) (KAPA synthase)","Cytoplasm","This protein is similar to CT777, a predicted 8-amino-7-oxononanoate synthase from Chlamydia trachomatis. It is also similar to BT0870.Numerous significant hits in gapped BLAST to glycine C-acetyltransferases (see comments); e.g. residues 28-391 are 43% similar to Z99112 of Bacillus subtilis, residues 1-395 are 42% similar to F75017 of Pyrococcus abyssi. Also numerous significant hits to 8-amino-7-oxononanoate synthase (see comments); e.g. residues 14-395 are 40% similar to M29291 of Bacillus sphaericus, residues 17-391 are 36%similar to Z99119 of B. subtilis.","
InterPro
IPR001917
Binding_site
Aminotransferase, class-II
PS00599\"[240-249]?AA_TRANSFER_CLASS_2
InterPro
IPR004839
Domain
Aminotransferase, class I and II
PF00155\"[43-385]TAminotran_1_2
InterPro
IPR015421
Domain
Pyridoxal phosphate-dependent transferase, major region, subdomain 1
G3DSA:3.40.640.10\"[59-290]TPyrdxlP-dep_Trfase_major_sub1
InterPro
IPR015424
Domain
Pyridoxal phosphate-dependent transferase, major region
SSF53383\"[4-389]TPyrdxlP-dep_Trfase_major
noIPR
unintegrated
unintegrated
PTHR13693\"[37-394]TPTHR13693
PTHR13693:SF12\"[37-394]TPTHR13693:SF12


","BeTs to 11 clades of COG0156COG name: Biotin biosynthesis protein BioF and related aminotransferasesFunctional Class: HThe phylogenetic pattern of COG0156 is -m-kYq-cEBRhuj----iNxNumber of proteins in this genome belonging to this COG is 3","***** IPB001917 (Aminotransferases class-II) with a combined E-value of 2e-14. IPB001917A 74-85 IPB001917B 132-141 IPB001917C 204-218 IPB001917D 353-366","Residues 14-85 are 41% similar to a (TRANSFERASE LIGASE SYNTHASE) protein domain (PD001058) which is seen in O58030_PYRHO.Residues 63-271 are 44% similar to a (PYRIDOXAL PHOSPHATE AMINOTRANSFERASE TRANSFERASE PROTEIN) protein domain (PD000087) which is seen in O54694_CRIGR.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Wed Dec 3 09:41:17 2003","Thu Jun 7 13:14:31 MDT 2001","Wed Dec 3 09:41:17 2003","Fri Mar 16 08:49:50 MST 2001","Wed Dec 3 09:41:17 2003","Fri Mar 16 08:49:50 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1556 shows 37% similarity to PG0439, 2-amino-3-ketobutyrate coenzyme A ligase and 31% similarity to PG1061, 8-amino-7-oxononanoate synthase.","Fri Mar 16 08:49:50 MST 2001","Fri Mar 16 08:49:50 MST 2001","-54% similar to PDB:1FC4 2-AMINO-3-KETOBUTYRATE COA LIGASE (E_value = 3.4E_61);-52% similar to PDB:1BS0 PLP-DEPENDENT ACYL-COA SYNTHASE (E_value = 3.5E_45);-52% similar to PDB:2G6W Suicide inhibition of a-Oxamine Synthase: Structures of the Covalent Adducts of 8-Amino-7-oxonanoate Synthase with trifluoroalanine (E_value = 3.5E_45);-52% similar to PDB:1DJ9 CRYSTAL STRUCTURE OF 8-AMINO-7-OXONANOATE SYNTHASE (OR 7-KETO-8AMINIPELARGONATE OR KAPA SYNTHASE) COMPLEXED WITH PLP AND THE PRODUCT 8(S)-AMINO-7-OXONANONOATE (OR KAPA). THE ENZYME OF BIOTIN BIOSYNTHETIC PATHWAY. (E_value = 5.9E_45);-52% similar to PDB:1DJE CRYSTAL STRUCTURE OF THE PLP-BOUND FORM OF 8-AMINO-7-OXONANOATE SYNTHASE (E_value = 5.9E_45);","","","Residues 81 to 386 (E-value = 4.6e-37) place PG1556 in the Aminotran_1_2 family which is described as Aminotransferase class I and II (PF00155)","Fri Mar 16 08:49:50 MST 2001","34541403","","","Bower,S., Perkins,J.B., Yocum,R.R., Howitt,C.L., Rahaim,P. and Pero,J. 1996. Cloning, sequencing, and characterization of the Bacillus subtilis biotin biosynthetic operon. J. Bacteriol. 178 (14): 4122-4130. PubMed: 8763940.Gloeckler,R., Ohsawa,I., Speck,D., Ledoux,C., Bernard,S., Zinsius,M., Villeval,D., Kisou,T., Kamogawa,K. and Lemoine,Y. 1990. Cloning and characterization of the Bacillus sphaericus genes controlling the bioconversion of pimelate into dethiobiotin. Gene 87(1): 63-70. PubMed: 2110099.Mukherjee,J.J. and Dekker,E.E. Purification, properties, and N-terminal amino acid sequence of homogeneous Escherichia coli 2-amino-3-ketobutyrate CoA ligase, a pyridoxal phosphate-dependent enzyme. J. Biol. Chem. 262 (30), 14441-14447 (1987). PubMed: 3117785.","","Thu Jun 7 13:14:31 MDT 2001","1","","","PG1780" "PG1557","1870166","1870792","627","ATGGTAATGAATACAACGATAATAGGAGTAGCAGGCGGAAGTGCTTCCGGCAAGAGTACATTGGTGAAAAAGCTCTGTGAGGCTTTCGTCGAAGAAGATGTGCTTGTACTCTGTCACGATTACTATTACAAGGCCAATGACCACCTCTCCCTTGAGGAAAGAAAGAAGCTGAACTACGACCATCCCAATGCTTTCGACACGGATATGTTCGTCAGGGATATTCTCTCTCTGAAGGCAGGCAAAACGATAGAGCGTCCGGTCTATTCTTTCGTAGAGCACAATCGTTTGCAAGAAAAAGTAACCGTTCGTCCTGCCAAAGTGATCGTACTGGATGGAATCCTGATATTCGAGAACAAAGAGCTGCGGGATCTGATGAATGTGAAAGTATTCGTCGATACCGATGCGGATATTCGATTGGCGCGCCGCCTTGTGCGCGATGTCCAGGAACGGGGACGCAATATGGATTCGGTATTGGCACAATACTTCAGTACGGTTCGGCCTATGCACGAGGATTTTGTGGAACCATCCAAGCGGTACGCCGATCTGATCATTCCGGAAGGTGGATTCAATTCGGTGGCGCTCTCACTCCTTGTCGAAAAAATCCGATCGGTGATTCGTAAGGAAGAA","6.70","-0.88","23935","MVMNTTIIGVAGGSASGKSTLVKKLCEAFVEEDVLVLCHDYYYKANDHLSLEERKKLNYDHPNAFDTDMFVRDILSLKAGKTIERPVYSFVEHNRLQEKVTVRPAKVIVLDGILIFENKELRDLMNVKVFVDTDADIRLARRLVRDVQERGRNMDSVLAQYFSTVRPMHEDFVEPSKRYADLIIPEGGFNSVALSLLVEKIRSVIRKEE","1870166 1870792","TIGR ID: PG1781","uridine kinase","Cytoplasm","Residues 7-208 have 53% similarity to AP001511 B. halodurans uridine kinase . Residues 7-201 have 54% similarity to D90845, E. coli uridine kinase.Residues 1-203 have 47% similarity to AE001878, D. radiodurans uridine kinase.","
InterPro
IPR000764
Family
Uridine kinase
PR00988\"[5-22]T\"[35-46]T\"[80-95]T\"[136-146]T\"[150-161]T\"[172-185]TURIDINKINASE
PTHR10285:SF6\"[13-209]TUridine_kin
TIGR00235\"[1-206]Tudk
InterPro
IPR006083
Family
Phosphoribulokinase/uridine kinase
PF00485\"[7-193]TPRK
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[4-207]TG3DSA:3.40.50.300
PTHR10285\"[13-209]TPTHR10285
SSF52540\"[4-207]TSSF52540


","BeTs to 9 clades of COG0572COG name: Uridine kinaseFunctional Class: FThe phylogenetic pattern of COG0572 is ----Y-vceb-h--gpol-n-Number of proteins in this genome belonging to this COG is 2","***** IPB001324 (Phosphoribulokinase family) with a combined E-value of 1.7e-12. IPB001324A 7-25 IPB001324B 34-46 IPB001324D 122-172","Residues 127-205 are 62% similar to a (KINASE TRANSFERASE ATP-BINDING URIDINE) protein domain (PD003826) which is seen in URK_BACSU.Residues 7-126 are 49% similar to a (KINASE TRANSFERASE ATP-BINDING URIDINE) protein domain (PD003288) which is seen in Q9Z7H0_BBBBB.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Mar 1 16:37:42 MST 2001","Thu Mar 1 16:37:42 MST 2001","Thu Mar 1 16:37:42 MST 2001","Thu Mar 1 16:37:42 MST 2001","Thu Mar 1 16:37:42 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 7-194 have 24% similarity to PG1521, uridine kinase.","Thu Mar 1 16:37:42 MST 2001","Thu Mar 1 16:37:42 MST 2001","-71% similar to PDB:1UDW Crystal structure of human uridine-cytidine kinase 2 complexed with a feedback-inhibitor, CTP (E_value = 1.8E_48);-71% similar to PDB:1UEI Crystal structure of human uridine-cytidine kinase 2 complexed with a feedback-inhibitor, UTP (E_value = 1.8E_48);-71% similar to PDB:1UEJ Crystal structure of human uridine-cytidine kinase 2 complexed with a substrate, cytidine (E_value = 1.8E_48);-71% similar to PDB:1UFQ Crystal structure of ligand-free human uridine-cytidine kinase 2 (E_value = 1.8E_48);-71% similar to PDB:1UJ2 Crystal structure of human uridine-cytidine kinase 2 complexed with products, CMP and ADP (E_value = 1.8E_48);","","","Residues 7 to 193 (E-value = 4.9e-48) place PG1557 in the PRK family which is described as Phosphoribulokinase / Uridine kinase family (PF00485)","Tue May 15 17:26:40 MDT 2001","34541404","","","","","","1","","","PG1781" "PG1558","1870837","1872021","1185","ATGCGATTAAAACCAAGGCTTTCTTTCCAAAACAGCATTCCTGTATTGTGGTGGATAGCTGCCATCGTATCTGCCATTACGAAAGCTGCTCCGCACAGGCACAATAACTATACCATATTCCGCTCCTCTTTCTATCATTTCTCCCGACATCAGTCGCTCTATTCGGCCTATCCGGCAGAGCATCACGATGTTTTTCTCTACGGCCCTGTCTTCTCTATCCTTTTCGCCCCTTTTGCCCTTTTGCCTTCTTTCATAGGGATGCTGCTGTGGCTGTGCTTTTCGGTTGCCGGATGCCTTTGGGCTGTCAGCCAATTACCCACGAGCGAAAAGAAAAAGGCTGCCATCCTATGGATTGCCTTCCTTGACCTGTACACGGCTTTGTGTATGCAGCAGTTCAACATCCTTATAGGAGCATGTATTCTGCTCAGCTTTGCTTTTGTGGAGAAGAAAAAGGAATGGGCGGCAACGCTTTTCATCGTATTAGGGACGCTGACCAAACTGTATGGTATCGTTGGCTTGGCTTTCTTCCCGTTTGTGAAAAGAAAAGGCCGCTATTTGGCTTGGCTTTTTGCATGGTTCGGTCTGATCGGTATCTTGCCGATGTTGTTTGGAGGAGGTTCTTATGCCCTTGAGCAGTATATGAATTGGTTTGCTAGCCTTGGCACGAAGAATGGGGAGAATCTGTTCTCCCTGTATCAAAACGTTTCCCTGCTCGGGATGGTTAGGAAAATGACCGGTATTGCCGGCTACTCCGACTTGCTGTTGTTAGTCCCCGGACTTATCCTATTCGCTCTTCCTTTCCTCCGATTCAGTCAGTACAAGGCTCCACTCTTTCGGATGAGCATATTGGCTTCGACTCTGCTTTTCACCGTTTTATTCAGTACCGGTAGCGAATCGAGTACTTATATCATAGCGTTGTTGGGTGTCGGTATCTGGTTCATACATCGCCCCAAAGGGAAACCCGACCGGCTGGATATTACACTCTTAGTCGGAACACTATTCCTCTCCTCTTTATCGCCGACCGATCTGTTCCCTGCGGCTCTTCGCAAGAATGTCGTGCTCCCATACGCATTGAAGGCTCTATTCCCGACCTTGGTTTGGATACGGTTGAGTATAGAGCTGCTTTGCACGCATTATCTCTCTACCCAAGCGGACACATCCTCATCTTTGGCCTATGATCAGAAT","10.50","17.67","44422","MRLKPRLSFQNSIPVLWWIAAIVSAITKAAPHRHNNYTIFRSSFYHFSRHQSLYSAYPAEHHDVFLYGPVFSILFAPFALLPSFIGMLLWLCFSVAGCLWAVSQLPTSEKKKAAILWIAFLDLYTALCMQQFNILIGACILLSFAFVEKKKEWAATLFIVLGTLTKLYGIVGLAFFPFVKRKGRYLAWLFAWFGLIGILPMLFGGGSYALEQYMNWFASLGTKNGENLFSLYQNVSLLGMVRKMTGIAGYSDLLLLVPGLILFALPFLRFSQYKAPLFRMSILASTLLFTVLFSTGSESSTYIIALLGVGIWFIHRPKGKPDRLDITLLVGTLFLSSLSPTDLFPAALRKNVVLPYALKALFPTLVWIRLSIELLCTHYLSTQADTSSSLAYDQN","1870837 1872021","TIGR ID: PG1782","conserved hypothetical protein","Inner membrane, Cytoplasm","This sequence corresponds to gi:34397722 in Genbank.Its nearest neighbor in the NR database is gi:29348797 from Bacteroides thetaiotaomicron VPI-5482.","
noIPR
unintegrated
unintegrated
signalp\"[1-29]?signal-peptide
tmhmm\"[14-32]?\"[53-75]?\"[81-103]?\"[113-147]?\"[157-179]?\"[189-209]?\"[248-268]?\"[273-293]?\"[299-314]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Mar 8 15:03:32 2005","Tue Mar 8 15:03:32 2005","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 8 15:03:32 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541405","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Tue Mar 8 15:03:32 2005","","1","","","PG1782" "PG1559","1872011","1872718","708","ATGATCAGAATTGATGTGGTACTGCCGGCATACCGTCCCGGTCAGGGGTGGGAGCGAGAGGCTATATCTCGCTTGACAGCTTTGTCCGATAGTATACCGGACGTGACTTTTCGCATATTCATCGTACCCGATGGGAGCAATGAAGGTCATTCTGACGAGGTACGTTCGCATTGGGCAACATCGCCGTGGGAGGTCATCTATTGCGACTATGCCAAGAATAGAGGAAAGGGCTTTGCCGTCCGCTATGGAGTAGGACAAACCGATGCTCCTTTTGTGCTCTATACGGATTATGATCTGCCGTTTACTCTGGATTCATATAAACAGGTGATAGAAGCCCTTCTGGAAGGTGCAGACGTCGTTATATCTCGCAGAGAGCCGGAATCTTATGGGAAAAAGATTCGCTTTAAGCGGAAAATGCTTTCCGACTTTTCGCATTTTGTAAACAAATTCTTCTTCTTGCCAACGACTGATACACAAGGAGGACTTAAGGGGTTCTCCTCAACGGGACGTTTTATTTTCCTCCAAACACGGATAGATAGTTTCCTGTTCGATACCGAGTTTATCTGTCTGGCTAAGAGAAAAAAAGTGTGCATAGCAGTCGTCAGCGGCTCCATTCGTCCTGACATCTCTCTGTCGGTAATGAAAGCCAAGACTATCCTTCGTGAAGTCTATAAAATCCCCAAATTGATCAAAGCAAGATGGTTCTCT","10.10","8.58","26977","MIRIDVVLPAYRPGQGWEREAISRLTALSDSIPDVTFRIFIVPDGSNEGHSDEVRSHWATSPWEVIYCDYAKNRGKGFAVRYGVGQTDAPFVLYTDYDLPFTLDSYKQVIEALLEGADVVISRREPESYGKKIRFKRKMLSDFSHFVNKFFFLPTTDTQGGLKGFSSTGRFIFLQTRIDSFLFDTEFICLAKRKKVCIAVVSGSIRPDISLSVMKAKTILREVYKIPKLIKARWFS","1872011 1872718","TIGR ID: PG1783","hypothetical protein","Cytoplasm","No significant hits found using gapped BLAST search of GenBank.","
InterPro
IPR001173
Domain
Glycosyl transferase, family 2
PF00535\"[5-182]TGlycos_transf_2
noIPR
unintegrated
unintegrated
G3DSA:3.90.550.10\"[3-187]TG3DSA:3.90.550.10
PTHR10859\"[18-194]TPTHR10859
SSF53448\"[3-151]TSSF53448


","BeTs to 8 clades of COG0463COG name: Glycosyltransferases involved in cell wall biogenesisFunctional Class: MThe phylogenetic pattern of COG0463 is AMTKYQVCEBRHujGPo---XNumber of proteins in this genome belonging to this COG is 8","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Mar 1 16:41:07 MST 2001","Thu Mar 1 16:41:07 MST 2001","Thu Mar 1 16:41:07 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 16:41:07 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 5 to 174 (E-value = 3.7e-05) place PG1559 in the Glycos_transf_2 family which is described as Glycosyl transferase (PF00535)","Thu Mar 1 16:41:07 MST 2001","34541406","","","","","","1","","","PG1783" "PG1560","1872709","1873500","792","ATGGTTCTCTTGAGTTTCGATATCGAGGAGTTCGATGTACCCCTTGAGCAGGGATATAAGGACTTCCCATCGGAAGAACAATTGCGCATCAGTCGTCAAGGGACAGAAGCCATCCTCCATATATTGAGAAAAAAAGGCGTTCGGTCCACCTTCTTCAGTACCGTTACTTTCTGGGAATCATTGCCGGAGGATCTGCGAAAGGGCATTTACACGGATGGACACGAATTGGCCTCTCATGGTGTGTTTCACTCTTCTTTCTCCAAAGAGCACCTTGCCGAATCTCGTCAGAAGCTCGCTTCTCTGTGGGATGGTACCGATGTCTGCGGTTTTCGGATGCCACGTATGATGCCCGTTGGCGATGCGGAAATAGCCGAAGCCGGTTACTTGTACAATTCTTCGCTCAATCCGACTTGTATCCCCGGTCGCTACAATCATCTCTCGGCTCCGAGATTACCCTATTTCGACAAGTATGGGGTCTTGCAGATGCCGAGTTCGGTAACACCTCTATTGCGTTTCCCTCTCTTTTGGCTTTCCCTCCACCATCTTCCCCTCAGGCTATACATCAGGATGATTCGTCACACCGTTCGGCGCGACAATTATCTCAATCTTTATTTTCACCCTTGGGAGTTCGCTGAGATCAGCTGTTTACCCGACTGCAAACTGAGCTATACCGTTACTCATAACAGTGGCGAAAAAATGTGTCGTAGACTGGAGGCCGTGATCGACACCCTCCTTGCCGATGGTTGTTCTTTCGGCACTTTCTCAGATTACTATCGTTTTCAAAAGCAAGGC","7.10","0.37","30579","MVLLSFDIEEFDVPLEQGYKDFPSEEQLRISRQGTEAILHILRKKGVRSTFFSTVTFWESLPEDLRKGIYTDGHELASHGVFHSSFSKEHLAESRQKLASLWDGTDVCGFRMPRMMPVGDAEIAEAGYLYNSSLNPTCIPGRYNHLSAPRLPYFDKYGVLQMPSSVTPLLRFPLFWLSLHHLPLRLYIRMIRHTVRRDNYLNLYFHPWEFAEISCLPDCKLSYTVTHNSGEKMCRRLEAVIDTLLADGCSFGTFSDYYRFQKQG","1872709 1873500","TIGR ID: PG1784","hypothetical protein","Cytoplasm","No significant hits using gapped BLAST search of GenBank.","
InterPro
IPR002509
Domain
Polysaccharide deacetylase
PF01522\"[32-83]TPolysacc_deac_1
noIPR
unintegrated
unintegrated
G3DSA:3.20.20.370\"[34-113]TG3DSA:3.20.20.370
SSF88713\"[1-263]TSSF88713


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Fri Mar 2 08:26:07 MST 2001","Thu Mar 1 16:44:48 MST 2001","Thu Mar 1 16:44:48 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 1 16:44:48 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Mar 1 16:44:48 MST 2001","34541407","","","","","","1","","","PG1784" "PG1560.1","1873569","1873871","303","TTGTGGAAATCTCTGTTTGCTTGGCAGCCATACGCCTGCTCTTTGATCTTTCCTGAAGATACAAAGAATCAACTCATACGAGAGGATACTATGGTCTCATATAGAACGTTTTCGATTTGTATGTACTTCTTTCGTGAGATTGCCATTACATGCTTGCAGCGAGGAATCTACCGAGGGAGATTGCCTGTGGCCGAACGCAGGCCATTGCTGATCTCTCGCAAGAAAACACAGTCTGCGAATTGGCTGAAGATCATACACACCGGATGTTGCCACCCTGTGAAGTGTTTGCTATGTTTGTCTACT","","","11872","LWKSLFAWQPYACSLIFPEDTKNQLIREDTMVSYRTFSICMYFFREIAITCLQRGIYRGRLPVAERRPLLISRKKTQSANWLKIIHTGCCHPVKCLLCLST","","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-15]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","","","Fri Jun 1 09:24:28 MDT 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Jun 1 09:24:28 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Fri Jun 1 09:24:28 MDT 2001","","","","","","","1","","","" "PG1561","1873718","1873984","267","ATGCTTGCAGCGAGGAATCTACCGAGGGAGATTGCCTGTGGCCGAACGCAGGCCATTGCTGATCTCTCGCAAGAAAACACAGTCTGCGAATTGGCTGAAGATCATACACACCGGATGTTGCCACCCTGTGAAGTGTTTGCTATGTTTGTCTACTTGAAACTCTGCCAAGAGATTCTTAATCAAGGAGCCAGGCAACAAGCGAACAACTCGGGCGAATGGGCTTATATTTTATACTCATCAGAGTTTGTTTTTGTGATAGGCCAAGGG","4.80","-3.72","10005","MLAARNLPREIACGRTQAIADLSQENTVCELAEDHTHRMLPPCEVFAMFVYLKLCQEILNQGARQQANNSGEWAYILYSSEFVFVIGQG","1873718 1873984","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No hit found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","","Fri Jun 1 09:25:48 MDT 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Jun 1 09:25:48 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Fri Jun 1 09:25:48 MDT 2001","","","","","","","1","","","" "PG1562","1874501","1875382","882","ATGAAACGACTGATTGTTTTTCTGGCAATGGGTGGCTTGCTGTTCACCCTTGCGAACGCACAAGAAGCAAACACTGCATCTGACACTCCCAAAAAGGACTGGACTATAAAAGGTGTGACCGGACTAAATGCCTCTCAGACTTCTCTGACCAACTGGGCTGCCGGTGGAGAAAACACGGTGGCAGGTAACCTCTATTTGAACATAGATGCCAACTACCTGAAAGATAAATGGAGTTGGGACAACGGTTTGCGTACAGACTTCGGTCTGACCTACACAACAGCCAACAAGTGGAACAAAAGTGTAGACAAGATCGAACTCTTCACGAAGGCCGGCTATGAGATCGGCAAACATTGGTACGGAAGTGCGCTTTTCACTTTCCTCTCACAGTATGCCAAAGGATATGAGAAGCCCTCGGATCACTTGACAGGAGTCAAGCATATCTCTAATTTCTTCGCTCCTGCATATCTCACTCTCGGTATTGGTGCGGACTATAAGCCCAATGAGAAGTTCTCTCTCTACCTCTCTCCTACAACGGGCAAGCTGACTGTAGTAGCAGACGACTACCTCTCAAGTTTGGGAGCCTTCGGGGTGAAAGTTGGTGAAAAGACAATGTTCGAACTTGGTGCTTTGGTAGTGGGTTCGGCCAATATAAATCTGATGGAGAATGTCAATTTGATAACCAAGGCTTCATTCTTCTCGGCTTATACGCACGACTTTGGCAACATTGACATCAATTGGGAGGCTATGCTGGCCATGAAGATCAACAAGTTCCTCACGGCTACGATAGCCACCAATCTTATCTACGACGATGATGTGAAGATCAACGATGGCCCGAAAATCCAGTTCAAAGAAGTTGTGGGCGTGGGTGTTGCGTACACTTTC","7.00","0.00","32315","MKRLIVFLAMGGLLFTLANAQEANTASDTPKKDWTIKGVTGLNASQTSLTNWAAGGENTVAGNLYLNIDANYLKDKWSWDNGLRTDFGLTYTTANKWNKSVDKIELFTKAGYEIGKHWYGSALFTFLSQYAKGYEKPSDHLTGVKHISNFFAPAYLTLGIGADYKPNEKFSLYLSPTTGKLTVVADDYLSSLGAFGVKVGEKTMFELGALVVGSANINLMENVNLITKASFFSAYTHDFGNIDINWEAMLAMKINKFLTATIATNLIYDDDVKINDGPKIQFKEVVGVGVAYTF","1874501 1875382","Veith et al. (2002) identified this protein by two-dimensional gel electrophoresis and peptide mass fingerprinting of outer membranes prepared from strain W50. They present the following results: This protein is strongly predicted by PSORT to be located in the outer membrane. The presence of few Cys residues and C-terminal phenylalanine support this conclusion. Based on signal peptide sequence comparisons to PG0626, PG0627, PG1592, PG1840, PG0836, PG0023, PG1893, the mature N-terminus of this protein is predicted to be pyroglutamate.TIGR ID: PG1786","probable integral outer membrane protein P30","Extracellular, Outer membrane","No significant hit found in gapped BLAST with E value less than e-04.","
noIPR
unintegrated
unintegrated
SSF56935\"[87-205]TSSF56935


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Mon Feb 11 12:09:04 2002","Mon Feb 11 12:25:44 2002","","Fri Feb 23 14:29:48 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 34-292 are 26% similar to PG1145, a hypothetical protein.","Fri Feb 23 14:29:48 MST 2001","Thu Feb 7 17:33:38 2002","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Feb 7 17:33:38 2002","34541408","","Veith,P., Talbo,G., Slakeski,N., Dashper,S., Moore,C.,Paolini,R., Reynolds,E., Major outer membrane proteins and proteolytic processing of RgpA, and Kgp of Porphyromonas gingivalis W50, Biochem J. 2002 (in press).","","Thu Feb 7 17:33:38 2002","","1","","","PG1786" "PG1563","1876001","1875537","465","TTGCCGTGCAAAGGTCTCCTCATAGGTATTATTGGTTGCTACTGTGTGCCGATGGTGGCCGGATGGATTATTGGAGCCGGAGGCGGTATCGGCTCGTATGGACGCAATGTGAATCAGACGGCACAGCGTGGCACAGGTGCATATACGGGGAGCAAGGCGATGATTGGAGGAGCACAAGTGCTGTTGCCGGTCATGTCGTTTGATGTCTCAAAGGGGCACTCATTAAAGGGGAGTAAATTTCCACCATTGGAAAAAGAAGTTTCCACTAGTGGAAAGTTTATTTTCCAATGGTGGAAAGATAACTTTCCACTTGTGGAAATCCGGCATGTGCCAAATAGTCGCCTGACACACAATAAAAAGAATGAACAAAAGTGCCTGCTTATTGTGCAGAGTTCCCATTTGGATGTAACGTCTCTGGGCACAAAGACAAACTATCCTTACGGAAGAGGTTGTTCAAAGCCGCTC","10.40","11.70","16693","LPCKGLLIGIIGCYCVPMVAGWIIGAGGGIGSYGRNVNQTAQRGTGAYTGSKAMIGGAQVLLPVMSFDVSKGHSLKGSKFPPLEKEVSTSGKFIFQWWKDNFPLVEIRHVPNSRLTHNKKNEQKCLLIVQSSHLDVTSLGTKTNYPYGRGCSKPL","1876001 1875537","TIGR ID: PG1787","hypothetical protein","Periplasm, Extracellular","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR012424
Family
Homologues of TraJ from Bacteroides conjugative transposon
PF07863\"[6-78]TCtnDOT_TraJ
noIPR
unintegrated
unintegrated
signalp\"[1-21]?signal-peptide
tmhmm\"[5-25]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Fri Mar 2 08:30:39 MST 2001","","Fri Mar 2 08:30:39 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","PG1563 shows similarity to several hypothetical proteins: Residues 15-133 have 81% simialrity to PG0787.1; Residues 4-133 have 75% similarity to PG0455; Residues 6-133 have 75% similarity to PG1105.2; Residues 6-133 have 73% similarity to PG1941.1. PG1563 is also similar to PG0941.1 and PG1198, both hypothetical proteins, and to PG1293, TraJ-related protein.","Tue Jun 5 09:06:28 MDT 2001","Fri Mar 2 08:30:39 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Jun 5 09:06:28 MDT 2001","34541409","","","","","","1","","","PG1787" "PG1564","1876119","1877387","1269","ATGGGTAGATATTCTTATATTTGCGACCATATGAGAAAATCACTCACTATTAAAAATCAAAAACATAGAATGAAGAAAACGCTTTTGCTCGCTGCGGTAGTTGTTTGCAGCAGTTTCGTCGTACAAGCTCAACAGAAGAGTGCAGACGTTGTAGAGAATCAGTTCACTACTATTAAAGAAGTGCCAATTACGCCGGTGAAAGATCAGGCCAACTCAGGTACATGCTGGTCATACTCTGCATTAGGATTCCTCGAAAGCGAAATCCTCCGTATGGGAAAGCCCGAAGTGGACTTGGCCGAAATGCACTCCGTAGCTCAATCATACAAGGACAAAGGCGAGAAGTATGTACGTATGCATGGGAAGCTGAACTTCGGACAGGGCGGTTCCTTCTACGATGTTCTCTATGTGGTGAAGCACTACGGCGTCGTTCCACAGTCTGTCATGCAGGGCTTGAACTATGGCACGAAGAAGAATGCTCACAGTGAATTGGCCGACGGTGCTCTGGCCTACCTCAAGGCTATCGTGACGAATCCTAATGGCAAGCTCACTCCTGCATGGAAAAAAGCCTATGATGGGATCATCGACAGCTACCTCGGCACATGTCCTGAAACTTTCACTTATGAAGGTAAGACCTACACGCCGAAGAGCTTTGCTCAGTATCTCGGTCTTAATGTCGATGACTATGTGTCGCTGACTTCTTATACGCATCATCCTTTTTACACACAGTTTGCCCTCGAAATCGAAGACAACTGGCGCGGCTCTCTCTCCTATAATATGCCCATCAACGAGCTGATGGAGACTATGGAATATGCCATCAACAACGGCTATTCCATCGCATGGGGTTCGGACGTAAGCGAAGTGGGCTTTACGCGTGATGGTATCGGCGTATTGGCCGACGTAGAAGGTATCGAAGCCAAAGGGTCGGATCAGGATCGTTGGGTAGGATTGAGCCGTGCCGAGAAGCAGGCAGAGATCATTCGTACGGTTAATAGTGCCGATTGTCCTGAAATCAACCCCACTCAAGAGTTCCGTCAGAAAGGTTACGATGAGTATAGCCTCACCGATGACCACGGTATGGTTATCTACGGTATCGCCAAGAATCAGAATGGACGCAAGTTCTTCATGGTGAAAAACTCATGGGGCGAAACCGGTAAGTACAAGGGTATCTGGTATGCTTCTTACAACTTCGTAGCCGGTAGGACAATGAATATCATCGTACACAAGAAGGCTATCCCTGCAGCCATCGCCAAGAAGCTCGGCATTCGCCAG","8.30","5.19","47448","MGRYSYICDHMRKSLTIKNQKHRMKKTLLLAAVVVCSSFVVQAQQKSADVVENQFTTIKEVPITPVKDQANSGTCWSYSALGFLESEILRMGKPEVDLAEMHSVAQSYKDKGEKYVRMHGKLNFGQGGSFYDVLYVVKHYGVVPQSVMQGLNYGTKKNAHSELADGALAYLKAIVTNPNGKLTPAWKKAYDGIIDSYLGTCPETFTYEGKTYTPKSFAQYLGLNVDDYVSLTSYTHHPFYTQFALEIEDNWRGSLSYNMPINELMETMEYAINNGYSIAWGSDVSEVGFTRDGIGVLADVEGIEAKGSDQDRWVGLSRAEKQAEIIRTVNSADCPEINPTQEFRQKGYDEYSLTDDHGMVIYGIAKNQNGRKFFMVKNSWGETGKYKGIWYASYNFVAGRTMNIIVHKKAIPAAIAKKLGIRQ","1876119 1877387","TIGR ID: PG1788","conserved hypothetical protein","Extracellular, Cytoplasm","No significant hits found using gapped BLAST search of GenBank with exception to a high similarity to BT1789.","
InterPro
IPR000169
Active_site
Peptidase, cysteine peptidase active site
PS00139\"[69-80]?THIOL_PROTEASE_CYS
InterPro
IPR000668
Domain
Peptidase C1A, papain C-terminal
PD000158\"[63-112]TPeptidase_C1
InterPro
IPR004134
Family
Peptidase C1B, bleomycin hydrolase
PIRSF005700\"[11-423]TPepC
PF03051\"[14-421]TPeptidase_C1_2
InterPro
IPR013128
Family
Peptidase C1A, papain
PTHR12411\"[63-104]TPeptidase_C1A
noIPR
unintegrated
unintegrated
G3DSA:3.90.70.10\"[56-416]TG3DSA:3.90.70.10
PTHR12411:SF34\"[63-104]TPTHR12411:SF34
SSF54001\"[19-413]TSSF54001


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 60-396 are 24% similar to a (AMINOPEPTIDASE HYDROLASE THIOL PROTEASE C BLEOMYCIN BLM) protein domain (PD005921) which is seen in PEPG_LACDL.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon Dec 8 16:10:53 2003","Mon Dec 8 16:10:53 2003","Fri Mar 2 08:48:49 MST 2001","","Fri Mar 2 08:48:49 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 66-415 have 22% similarity to PG1404, a cysteine aminopeptidase C. ","Tue Jun 5 10:08:37 MDT 2001","Fri Mar 2 08:48:49 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 14 to 421 (E-value = 3.5e-08) place PG1564 in the Pept_C1-like family which is described as Peptidase C1-like family (PF03051)","Tue Jun 5 10:08:37 MDT 2001","34541410","","","","","","1","","","PG1788" "PG1565","1879546","1877513","2034","ATGAATCCCCTCTTACAACCCTTTGATACGCCTTTCGGCAGTTACCCTTTCGACAAAATTTCGATAGCAGACTTCAAGGAAGCATTTGCCCATGCCTTAGCGGAAAAACGGGCAGAAGCAGATGCCATCATCAACAGTACCGAACCGCCGACTTTTGCCAATACGATTTTGGCATTAGAGCTTTGCGGTGAAAAGCTGGAGCTTGTCTGTGGAGCTTTCTTTAATCTCCTGCACGCCGACAGCAACGACGAACTGATGAATCTCTCCCGGGAGATAATGCCCGAACTGACCCGTCTCAGTACGGATATAGCCCTGAGCGAACCCTTGTTCGTGCGCATCCGAACCGTATGGGAGAGCGATGAGAAAGAAAAGCTCTCGGATGAAGAAAAACGCCTTCTGTATAATTGCTATCGGGGCTTTGTCGATAGCGGAGCACTACTCCCCACAGAGAAAAAAGACCGGCTGCGTACCCTGTCCGAAGAGATGAGTATGGCCTCATTGACATTCGGACAGAATGTGCTCAAGGACGAGAAACGCTACAAACTCCACCTCAGCGATCCGGCGGCTGTGGCCGGGATGCCCGAGACGGCTCTCGCTCTCGCTTCGGAGAAAGCCCGGCGAAAGGGCTATACGGAGGGTTGGCTTTTCGACCTTTCTGCTCCGAGCTACTTTGCTTTTATGAAGCATTGTCCCGATGGGAACCTGCGCCGGCAGATGTATGAAGCGAAAATGTGTGTCGGCTTCGTAGACAATGAGTATAACAACGAAGCTCTGATCCGTAGAATGGTAAACGGCCGTCTCGAGGAGGCACAACTCCTGGGTTACGATACCTTCGCCCACTTTGCTCTTCATGACAGGATGGCCAAGAACCCCAAGGCAGTCCAAGAACTACTGGACAAACTACTGGATGCATACAAGCCCAAAGCGACAGATGAATTGGAGATGATCCGCAAATGGGCTGCCGACAAGACATCCGAAGTCGATAACTTCACGATACAACCATGGGATTGGGCATACTTCTCGGAACAGTACAAACAGGCCCACTACGATCTGGACGATGAGATGATGCGCCCGTACTTCGAATTAGGGCGAGTCACACGTGGTATCTTCGGCTTGGCCAACCGACTGTACGGACTTCATTTCTCCGAACGGACGGATGTGCCGGTCTATCATCCGGATGTAAAGGTGTACGAAGTATCGGACGAAGACGGCTCTTATATCGGTCTGCTCTACACGGATTTCTTTCCACGCGAAGGCAAGCAAAACGGAGCATGGATGAACAACCTCCGGGACCAGTCCGAACATCAGCACCCGCACATCATCATCGTGATGAACTTCACCCCTCCTTCGGCGGACAAACCCTCGCTCCTGACAGCAGGTGAGGTGGAGACTTTCCTGCACGAGTTCGGCCATGCCCTGCATGGCATGCTGTCCAAATGCCGCTTCAGCTCCTTGTCCGGCACCTCGGTAGCCCGTGACTTCGTGGAACTTCCCAGCCAAATAATGGAAAACTGGCTGACAGAGAAAGATTTTCTCGACACCTTTGCCCGCCATTATATAACGGACGAACCTATGCCTACCGAATTGGTGGAAAAACTCCTCTCGGCACGAAATTACCTCGCAGCAAGCGGTGCATGCCGTCAGCTCAGCTTCGGCTATCTCGACATGGCATGGCATGGATTGTCTGCTCCGGTGGATGACAAATTAGACATCAAGGCTTTTGAAGAGGCTGCTTGGTCAAAAGCTCTTATTCTACCTCCTTCGCCCCCGAATGCCGTGATGAGCACGGCCTTCGGTCATATATTCTCGGGAGGCTATGCAGCCGGATACTATGGTTACAAATGGGCGGAAGTGCTGGATGCCGATGCTTTCGCAGCTTTCAAGGAAGTGGGTATTTTCGATCGCGAGGTAGCCGGTCGTTTCCGCCGTGAGATATTGGAGAGAGGCGATACGGCCGATGCCATGGAGCTGTATGTAGCTTTCCGTGGACATGAGCCGGACATTGCTCCCCTGCTGAAGCGTACCGGCTTGGTT","5.00","-27.66","77042","MNPLLQPFDTPFGSYPFDKISIADFKEAFAHALAEKRAEADAIINSTEPPTFANTILALELCGEKLELVCGAFFNLLHADSNDELMNLSREIMPELTRLSTDIALSEPLFVRIRTVWESDEKEKLSDEEKRLLYNCYRGFVDSGALLPTEKKDRLRTLSEEMSMASLTFGQNVLKDEKRYKLHLSDPAAVAGMPETALALASEKARRKGYTEGWLFDLSAPSYFAFMKHCPDGNLRRQMYEAKMCVGFVDNEYNNEALIRRMVNGRLEEAQLLGYDTFAHFALHDRMAKNPKAVQELLDKLLDAYKPKATDELEMIRKWAADKTSEVDNFTIQPWDWAYFSEQYKQAHYDLDDEMMRPYFELGRVTRGIFGLANRLYGLHFSERTDVPVYHPDVKVYEVSDEDGSYIGLLYTDFFPREGKQNGAWMNNLRDQSEHQHPHIIIVMNFTPPSADKPSLLTAGEVETFLHEFGHALHGMLSKCRFSSLSGTSVARDFVELPSQIMENWLTEKDFLDTFARHYITDEPMPTELVEKLLSARNYLAASGACRQLSFGYLDMAWHGLSAPVDDKLDIKAFEEAAWSKALILPPSPPNAVMSTAFGHIFSGGYAAGYYGYKWAEVLDADAFAAFKEVGIFDREVAGRFRREILERGDTADAMELYVAFRGHEPDIAPLLKRTGLV","1879582 1877513","TIGR ID: PG1789","peptidyl-dipeptidase Dcp","Cytoplasm, Extracellular","Residues 1-677 have 39% simialrity to AE00535, E. coli dipeptidyl carboxypeptidase II.Residues 2-677 have 37% similarity to AE004013, X. fastidiosa peptidyl-dipeptidase.Residues 2-677 have 37% similarity to M84575, S. typhimurium dipeptidyl carboxypeptidase.This sequence is similar to BT4262.","
InterPro
IPR001567
Domain
Peptidase M3A and M3B, thimet/oligopeptidase F
PF01432\"[226-677]TPeptidase_M3
InterPro
IPR006025
Binding_site
Peptidase M, neutral zinc metallopeptidases, zinc-binding site
PS00142\"[464-473]?ZINC_PROTEASE
noIPR
unintegrated
unintegrated
G3DSA:1.10.1370.10\"[143-677]TG3DSA:1.10.1370.10
G3DSA:1.20.1050.40\"[8-138]TG3DSA:1.20.1050.40
PTHR11804\"[356-678]TPTHR11804
PTHR11804:SF7\"[356-678]TPTHR11804:SF7
SSF55486\"[5-677]TSSF55486


","BeTs to 3 clades of COG0339COG name: Zn-dependent oligopeptidasesFunctional Class: EThe phylogenetic pattern of COG0339 is ----Y--cE--h---------Number of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","Residues 2-677 are 37% similar to a (HYDROLASE METALLOPROTEASE ZINC) protein domain (PD002945) which is seen in DCP_ECOLI.","","Thu Jun 14 12:15:15 MDT 2001","","Thu Jun 14 12:15:15 MDT 2001","Thu Jun 14 12:15:15 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:15:15 MDT 2001","Thu Jun 14 12:15:15 MDT 2001","","","Wed May 16 14:27:34 MDT 2001","Mon Jan 5 11:33:58 2004","Fri Mar 2 08:52:15 MST 2001","","Tue Jun 26 09:34:12 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 2-678 have 35% similarity to PG0684, peptidyl dipeptidase (oligopeptidase A).","Tue Jun 26 09:34:12 MDT 2001","Fri Mar 2 08:52:15 MST 2001","-54% similar to PDB:1Y79 Crystal Structure of the E.coli Dipeptidyl Carboxypeptidase Dcp in Complex with a Peptidic Inhibitor (E_value = 6.8E_119);-46% similar to PDB:1S4B Crystal structure of human thimet oligopeptidase. (E_value = 2.7E_67);-45% similar to PDB:2O36 Crystal structure of engineered thimet oligopeptidase with neurolysin specificity in neurotensin cleavage site (E_value = 5.1E_66);-47% similar to PDB:2O3E Crystal structure of engineered neurolysin with thimet oligopeptidase specificity for neurotensin cleavage site. (E_value = 2.2E_64);-46% similar to PDB:1I1I NEUROLYSIN (ENDOPEPTIDASE 24.16) CRYSTAL STRUCTURE (E_value = 4.1E_63);","","","Residues 226 to 677 (E-value = 4.1e-169) place PG1565 in the Peptidase_M3 family which is described as Peptidase family M3 (PF01432)","Tue Jun 26 09:34:12 MDT 2001","34541411","","","","","","1","","","PG1789" "PG1566","1881047","1879566","1482","ATGAAAAGAAGGTTTCTATCGCTGTTACTGCTGTACATACTCTCTTCCATCAGCCTTTCTGCTCAGCGGTTTCCGATGGTGCAGGGAATCGAGTTGGATACCGATTCGCTTTTCTCTCTGCCCAAGCGTCCTTGGCGCGCCATCGGTAAAACGATAGGCGTCAATCTGGCCGTATGGGGCTTCGATCATTTCATCATGAACGAGGACTTTGCAGACATCAGTTGGCAGACTATCAAGAGCAATTTCCAAACAGGCTTTGGCTGGGACAATGACAAGTTTGTCACCAACCTCTTCGCACATCCTTATCACGGATCGCTCTATTTCAATGCAGCGAGGTCGAACGGTTTGAGCTTCAGGCACTCTGCTCCGTTTGCCTTCTTTGGCAGTCTCATGTGGGAGCTGCTTATGGAAAACGAGCCACCGAGTATCAACGACCTCTGTGCCACCACCATAGGCGGTATAGCTTTGGGGGAGATGGGGCACAGGCTGTCGGACCTGCTCATCGACAATCGTACCACAGGGTGGGAACGTATGGGGCGCGAGGTGGCTATCGCTCTGATCAATCCGATGCGCTTTCTCAACCGTCTGACAGCAGGAGAGGTGACTTCTGTCGGGAGTCGCAGCGGACAGATATTTCAGTCTGTCCCCATAAACATAGTCGTCGATGCCGGCTTTCGCTTTTTGGCAGACAAGCGGCATGCCCGAACCGGTGCCACGGCTCTGACCCTGAATCTGAGATTCGACTACGGCGATCCATTCCGAAGCGAGACTTTCTCTCCATACGATTTCTTCCAATTCAAAGCCGGATTGAGTTTCTCCGAATCGCAACCTCTGCTGAGCCAGATCAATCTGATCGGAATCCTAAGCGGATGCCAACTGCTCGCACACGAACGAACGGTTTTGGTGGGAGGTCTCTTTCAGCACTTCGACTACTACAATTCGGAAAAACGAATAAGCAAAAATTCGGAGGAGGTACTCGTCACCCCATACCGTATCTCGCAAGTGGCAGCTCTGGGAGGCGGTCTTATCTTCCAGCACCACGGAAAATTTCGACGACGTCCTCTGGAGCTATATGCCGAGACCTACCTGAATGTCGTCCCGATGGGAGCCAGTCTGTCGGATCACTACAACGTGGACAATCGGGACTATAACCTCGGCAGCGGATTGAGCGGCAAGCTATACCTTGGTGCTACGTACAATGATCTGTGGAGCTGGCTCTTGGGAGTCGAAAGCTATCGGCTCTACACATGGATCGGGTATGAAGAGCCGCACCAGAAAAATACCGATGTCAGCTCTTTTATGGTGCAGGGGGACGAAAGCAAGGCGCGCCTACTGGTGACGAGTTCCGAGTTCGCATTTCATCCTGGCCCCTGGCATGTAGCCATCGTCGCTCGCCGTTTCATCCGCAAAACAGCCTATCAATTCTACCCTAACGTATCATTCGATACCGGCGACATACAGCTGCGTGTCGGATTTCACTTC","7.80","3.54","55978","MKRRFLSLLLLYILSSISLSAQRFPMVQGIELDTDSLFSLPKRPWRAIGKTIGVNLAVWGFDHFIMNEDFADISWQTIKSNFQTGFGWDNDKFVTNLFAHPYHGSLYFNAARSNGLSFRHSAPFAFFGSLMWELLMENEPPSINDLCATTIGGIALGEMGHRLSDLLIDNRTTGWERMGREVAIALINPMRFLNRLTAGEVTSVGSRSGQIFQSVPINIVVDAGFRFLADKRHARTGATALTLNLRFDYGDPFRSETFSPYDFFQFKAGLSFSESQPLLSQINLIGILSGCQLLAHERTVLVGGLFQHFDYYNSEKRISKNSEEVLVTPYRISQVAALGGGLIFQHHGKFRRRPLELYAETYLNVVPMGASLSDHYNVDNRDYNLGSGLSGKLYLGATYNDLWSWLLGVESYRLYTWIGYEEPHQKNTDVSSFMVQGDESKARLLVTSSEFAFHPGPWHVAIVARRFIRKTAYQFYPNVSFDTGDIQLRVGFHF","1881047 1879566","TIGR ID: PG1790","conserved hypothetical protein","Outer membrane, Inner membrane, Cytoplasm","This sequence corresponds to gi:34397729 in Genbank.Its nearest neighbor in the NR database is gi:47571524 from Rubrivivax gelatinosus PM1.","
noIPR
unintegrated
unintegrated
signalp\"[1-21]?signal-peptide
tmhmm\"[5-25]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 41-204 are 33% similar to a (PROTEIN PUTATIVE) protein domain (PD125721) which is seen in Q9ZL41_BBBBB.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Fri Mar 2 09:18:33 MST 2001","Tue Mar 8 15:14:42 2005","Fri Mar 2 09:18:33 MST 2001","","Fri Mar 2 09:18:33 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Mar 2 09:18:33 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Fri Mar 2 09:18:33 MST 2001","34541412","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Tue Mar 8 15:14:42 2005","","1","","","PG1790" "PG1567","1881765","1884065","2301","ATGAAACAATCGGGGACGGCTGCACACAAGCTAACGATATTCTATGTCGGTATGCTTCTTCTCTTTTTGATCGGACTTTGGCTTTTCGCCACTATCGGGAAAGAGTTGGAAACCAATGTAGTCGACAAAGCGATGTCCCTTCGGGGGCGAGGTGGATTGGTCGGTGCTTTCGATTCTTTCAGCGAATCGGTACATCACCATTTCACGGACACTATCGGTGTCTTGTTGTTGCAGATCATCGTTATTCTTACGGTGGCGAGGCTCGTAGCGTGGTTTTTCGGGAAAATCGGCCAGCCCACTGTAATCGGTGAAATCGTGGCGGGAATACTCCTCGGCCCATCTCTCTTGGGAGCGGTTTGGCCGGAGGCTTATGAAGTCCTTTTCCCCTTGTCCGCTTTGGCCAATCTGGAGCTGCTCAGTCAGTTCGGCCTCATCCTGTTTATGTTTGTCATTGGCATGGAGCTGAATATCAATGACATTAAGCCTCGCTTCAGCCAATCGATGATCATCAGTCATGCAGGTATCTTTATCCCCTTTCTCTTAGGCTTGCTGATCAGCTATATGACATATAAGGATTATGCAGCCGATACCACGACTTTTCTCCCCTATGGCCTCTTTATCGGTATCTCGATGAGCATCACGGCTTTTCCCGTATTGGCCAGAATCATACAAGAGCGTCAATTAGGGAAAAGCCATCTCGGGATGCTTTCTATCAGTACAGCTGCAGCAGGGGATATTTCTGCATGGTTGATGCTCGCCGGAGTAATGGCCATTACGCAGAGTGGCAGCTTTCTCAGTGCCATATACAACTTTCTCTTCCTCATCCTGTACCTCTTGGTTATATTCGGACTTGTGCGACCTTTCTTCAAGGTGATCGGACGACTTTATGACAATCAGGAGGTCGTGAGCAAGACGATGATCGGCTTTATTTTCGTTTTGCTATTGGCAAGTGCCTACGCTACGGAACTATTGAGTATGCATGCCCTTTTCGGAGCTTTCATGCTCGGATTGGTAATGCCCGAGAATGTCCAATTCCGCAAGATTTTGACAGAGAAGGTAGAAGACGTTTCTCTCACCCTTTTTCTCCCCCTGTTTTTTGTCAGTTCCGGTTTGCAAACGAAGTTGGGGTTGCTGGACAGTGCCTCCCTGTGGCTACTGACAGGTGCTTTCACCTTGATTGCCATTATCGGCAAATTCGGCGGTACGTATGTGGCTGCAAGGTTCTGTGGAGAGAGGAAGAAAGCATCGCTTTACTTAGGGGCGTTCATGAATACGCGTGGCCTGATGGAGCTTGTCGTGCTGGCCATCGGACGCGAGCTTGGCATCCTCCCTCCGGTTATATTCACAATTCTGGTGATGATGACCCTGATCACCACTTTCATGACGACTCCCCTGCTCCGACTCATAGATCTTTTCTTCAAACGCGAGACCGAGCTTGAGAATGCAGCACTTCAGAAAGAGAATAGCGGGGCCGTATTGCTTTCGTTCGGAAGGGCTTCGAGTGGTGCACATTTGCTTCATGCCACAGACCTCTTGATGCATCGGGGCGATGAGAAACCCTCTGTTACGGCTCTTCATATCACTGTCGGGAGCGACACGAATCTGACTTCTTCGGAAGTATATGAAGAAAGAGCTTTTGCTCCTATCCGAGAAGAAAGCGATCGCAGACGACTCCCCATCAGAACACTGCATCACCACACGTTCGAGCATCCGGAGGCTGAGGTAGTACGTACGGTCAATGCCGGTGGATATAGCTTCTTGCTTGTCGGTGCAGGGATCAATTTGTCCGATCGTAAGAGTGACAGGGAATTGCTGTATTTCCGCAAAAAACTGCAGAGAAAGTTAGGCCCTATCTCCATAGCCACTCCGGAAGCTCTCTTGAATGCGCATGAAATGCTGAGAGACAAGATGCACTACTTCATCGAGCAGACGCAATGCAGTGTGGGTATTTTTATTCATCGTGGATTCAAGCATGCGGGTAAGGTCTTGCTCCTGATGGAGAATGAAGGTGACGAAGAACTCCTCGCTTATGCTCGTTCGTTGGCTCGCAACAATGGCAGTGTGCTCGATGTACTACCCGAGACCGATGGTTTACCGCCGACTCTATCCATGGGAGAAAACAGACTGAAAGCCGGATTGCCATCGACAATCAATATCAGCAGCTACCACTTTATGCTCGTCAGCTACCGCTATTGGTTGCGCTTTGCCGGTGAGTGTCCGAGTGTGATCGAGCACTTGCCCTCTACCATCATTATCCATCATCGAAATGACCGCTCTTCGACATTGAAAGCTGCAATGATA","8.10","6.44","84924","MKQSGTAAHKLTIFYVGMLLLFLIGLWLFATIGKELETNVVDKAMSLRGRGGLVGAFDSFSESVHHHFTDTIGVLLLQIIVILTVARLVAWFFGKIGQPTVIGEIVAGILLGPSLLGAVWPEAYEVLFPLSALANLELLSQFGLILFMFVIGMELNINDIKPRFSQSMIISHAGIFIPFLLGLLISYMTYKDYAADTTTFLPYGLFIGISMSITAFPVLARIIQERQLGKSHLGMLSISTAAAGDISAWLMLAGVMAITQSGSFLSAIYNFLFLILYLLVIFGLVRPFFKVIGRLYDNQEVVSKTMIGFIFVLLLASAYATELLSMHALFGAFMLGLVMPENVQFRKILTEKVEDVSLTLFLPLFFVSSGLQTKLGLLDSASLWLLTGAFTLIAIIGKFGGTYVAARFCGERKKASLYLGAFMNTRGLMELVVLAIGRELGILPPVIFTILVMMTLITTFMTTPLLRLIDLFFKRETELENAALQKENSGAVLLSFGRASSGAHLLHATDLLMHRGDEKPSVTALHITVGSDTNLTSSEVYEERAFAPIREESDRRRLPIRTLHHHTFEHPEAEVVRTVNAGGYSFLLVGAGINLSDRKSDRELLYFRKKLQRKLGPISIATPEALLNAHEMLRDKMHYFIEQTQCSVGIFIHRGFKHAGKVLLLMENEGDEELLAYARSLARNNGSVLDVLPETDGLPPTLSMGENRLKAGLPSTINISSYHFMLVSYRYWLRFAGECPSVIEHLPSTIIIHHRNDRSSTLKAAMI","1881765 1884065","TIGR ID: PG1792","Na+/H+-exchanging protein (Na+/H+ antiporter)","Inner membrane, Cytoplasm","Residues 86-466 have 38% similarity to D90902, Synechocystis sp. Na/H antiporter.Residues 87-466 have 36% simliarity to AL161559, A. thaliana putative Na+/H+-exchanging protein.Residues 98-476 have 33% similarity to AL157994, S. pombe probable K+/H+-antiporter protein.This sequence is similar to BT1783.","
InterPro
IPR006153
Family
Sodium/hydrogen exchanger
PF00999\"[79-467]TNa_H_Exchanger


","BeTs to 13 clades of COG0475COG name: K efflux system, membrane domainFunctional Class: PThe phylogenetic pattern of COG0475 is AmtKyQ-CEBrhUJ--o---xNumber of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","Residues 419-465 are 57% similar to a (ANTIPORTER NA+/H+ LONG PROTEIN) protein domain (PD005888) which is seen in P72973_SYNY3.Residues 86-373 are 37% similar to a (NA+/H+ PROTEIN TRANSMEMBRANE TRANSPORT ANTIPORTER) protein domain (PD000631) which is seen in P72973_SYNY3.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed May 16 14:40:07 MDT 2001","Mon Dec 8 16:08:16 2003","Fri Mar 2 09:26:24 MST 2001","","Fri Mar 2 09:26:24 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 95-393 have 20% similarity to PG0347, Na+/H+ antiporter.","Fri Mar 16 08:53:04 MST 2001","Fri Mar 2 09:26:24 MST 2001","-44% similar to PDB:1ICI CRYSTAL STRUCTURE OF A SIR2 HOMOLOG-NAD COMPLEX (E_value = );-46% similar to PDB:2FGZ Crystal Structure Analysis of apo pullulanase from Klebsiella pneumoniae (E_value = );-46% similar to PDB:2FH6 Crystal Structure Analysis of Klebsiella pneumoniae pullulanase complexed with glucoase (E_value = );-46% similar to PDB:2FH8 Crystal Structure Analysis of Klebsiella pneumoniae pullulanase complexed with isomaltose (E_value = );-46% similar to PDB:2FHB Crystal Structure Analysis of Klebsiella pneumoniae pullulanase complexed with maltose (E_value = );","","","Residues 75 to 472 (E-value = 9.2e-15) place PG1567 in the Na_H_Exchanger family which is described as Sodium/hydrogen exchanger family (PF00999)","Fri Mar 16 08:53:04 MST 2001","34541414","","","","","","1","","","PG1792" "PG1568","1884065","1886068","2004","ATGAGAATAATCGAACAAGATCCTTGGCTGCGCCCATATGAATCAGTAATAGAAAGCAGACTGAAGTATGCTCGCAAACGAGAGACGGATTTGACCGGAGGAAGATCCGGAGGATTGAGCGACTTCGCCAATGGACATCTCTATTACGGTCTTCATCAGGACGGGGATTCGTGGGTGATTCGTGAGTTCGCGCCCGAAGCCACGGCCGTATATCTGATCGGCGAACTTTCGCGCTGGCGTAGATTGCCACAGTTTCGGTTTGCGCCTGTGGATGAAGCGGGTTCATGGGAATTGCGACTTTCATGCCGACTGCTTCCGCATGGCTCTCGCTACAGGCTCTTCTTCGAATGGCCCGGTGGCGAAGGAGAGAGGATACCGGCTTGGTGCAACCGTGTAGAACAGGATCCTGAAACTTATCTTTTCTACGCCCAAGTGTGGGTGCCGGATACTCCCTATGAAATGAAACACCCTCATCCTAACCGTAAGGACGAGCCTTTGCTAATTTATGAATGTCATATCGGGATGTCGTCCGAGGAGGAGAAGGTCAGCACATACGAAGAGTTTCGACGGAATATCCTCCCCCGTATCTGCAAGGACGGCTATAATGCCATACAGCTCATGGCGATACAGGAGCATCCTTATTACGCGTCGTTCGGCTATCATGTGTCGAGTTTCTTTGCTCCGAGCAGTCGTTTTGGAACGCCCGAAGATCTCAAGCGTCTGATTGATGAAGCCCACGCTCTCGGCCTCTACGTGATCATGGATCTGGTGCATTCGCATGCAGTCAAGAACGAGGTCGAAGGCTTGGGCTTGTATGACGGCACGCATACCCTTTTCTTCCATGACGGCAATCGCGGACTCCATCCGGCTTGGGATTCGTATTGCTTCGACTATGGTAGGGACAACGTACTGCACTTCCTCCTTTCCAACTGCAAATACTGGCTGACAGAGTTTGGATTCGACGGCTTCCGTTTCGATGGTGTGACGTCCATGCTATACTATAGTCATGGACTCGGCGATAGGTTCGACAATTACGACAGCTATTACAACGGCCATCAGGACGGCGATGCTATTGCCTATCTGATCTTGGCCAACAAACTCATTCACGAACTTTGCCCCGATGCAATCACGATAGCCGAAGAGGTAAGCGGCATGCCCGGATTAGCTCTTCCCTTGGCAGATGGGGGATATGGCTTTGACTACCGTTTAGCCATGAATATCCCCGATTTCTGGATCAAGCTCATCAAAGAGCATCGTGACGAAGACTGGAATCCCGGCGACATCTGGTATCAACTGACCAATCGCCGTCAGGAGGAAAAGACGATCAGCTATGCCGAGAGTCACGATCAGGCTTTGGTCGGGGACAAGACAATCATATTTCGCCTGATCGATGCCGATATGTATTGGTATATGAACAAGCAGAGTTGTGTACATAGCGTGGACAGAGGCATTGCACTGCTGAAGATGATCCGTCTCTTCACTGCCACGACGATGAATGGTGGTTATCTCAATTTCATGGGCAATGAATTCGGACATCCCGAGTGGATAGACTTCCCTCGCGAAGGGAATGGCTGGTCGTACAAGTATGCCCGCAGGCAGTGGAGTCTGGCCGATAGTCCTTTCTTGCGCTATGCAGGTCTGCACTTGTTTGATCAGGATATGATAGCCATGATACGATCGGTGGAGAGCTTTCACAAACTCCCTTTGCGCGAATACTGGCTCAAGAGAGAAGAGCAGGTGATCTGTTACGGTCGAGGCGATTTCTTCTTCGTTTTCAATTTTCACCCCGAACGTTCTTATTCGGATTATCCCATCCCTCTTCCGGCCGGTAAGTATTCGGTAGCGATGAGTACCGATGCACGGAAGTACGAAGGTTTCGGTCGTGTGGACGAATGGGTGGAGCACTTTACTCTTCCGGATGGGAGTAAAGATCGGTTTACCCATGAACAGTATTTGAACCTCTATCTGCCGGCTCGCTCTGCTCTCGTCCTGAAGCTTGCCGAA","5.70","-19.85","78008","MRIIEQDPWLRPYESVIESRLKYARKRETDLTGGRSGGLSDFANGHLYYGLHQDGDSWVIREFAPEATAVYLIGELSRWRRLPQFRFAPVDEAGSWELRLSCRLLPHGSRYRLFFEWPGGEGERIPAWCNRVEQDPETYLFYAQVWVPDTPYEMKHPHPNRKDEPLLIYECHIGMSSEEEKVSTYEEFRRNILPRICKDGYNAIQLMAIQEHPYYASFGYHVSSFFAPSSRFGTPEDLKRLIDEAHALGLYVIMDLVHSHAVKNEVEGLGLYDGTHTLFFHDGNRGLHPAWDSYCFDYGRDNVLHFLLSNCKYWLTEFGFDGFRFDGVTSMLYYSHGLGDRFDNYDSYYNGHQDGDAIAYLILANKLIHELCPDAITIAEEVSGMPGLALPLADGGYGFDYRLAMNIPDFWIKLIKEHRDEDWNPGDIWYQLTNRRQEEKTISYAESHDQALVGDKTIIFRLIDADMYWYMNKQSCVHSVDRGIALLKMIRLFTATTMNGGYLNFMGNEFGHPEWIDFPREGNGWSYKYARRQWSLADSPFLRYAGLHLFDQDMIAMIRSVESFHKLPLREYWLKREEQVICYGRGDFFFVFNFHPERSYSDYPIPLPAGKYSVAMSTDARKYEGFGRVDEWVEHFTLPDGSKDRFTHEQYLNLYLPARSALVLKLAE","1884065 1886068","TIGR ID: PG1793","1,4-alpha-glucan branching enzyme","Cytoplasm","Numerous significant hits using gapped BLAST to eukaryotic starch branching enzymes from, e.g., Homo sapiens (gi: 4557619), Oryza sativa (gi: 477282), among others. This protein is similar to CT866, a predicted 1,4-alpha-glucan starch branching enzyme from Chlamydia trachomatis.","
InterPro
IPR004193
Domain
Glycoside hydrolase, family 13, N-terminal
PF02922\"[48-129]TIsoamylase_N
InterPro
IPR006047
Domain
Glycosyl hydrolase, family 13, catalytic region
PF00128\"[200-257]TAlpha-amylase
InterPro
IPR006048
Domain
Alpha-amylase, C-terminal all beta
PF02806\"[573-667]TAlpha-amylase_C
InterPro
IPR013780
Domain
Glycosyl hydrolase, family 13, all-beta
G3DSA:2.60.40.1180\"[576-665]TGlyco_hydro_13_b
InterPro
IPR013781
Domain
Glycoside hydrolase, catalytic core
G3DSA:3.20.20.80\"[158-560]TGlyco_hydro_cat
InterPro
IPR013782
Family
1,4-alpha-glucan branching enzyme
PIRSF000463\"[2-668]TGlgB
InterPro
IPR014756
Domain
Immunoglobulin E-set
SSF81296\"[41-138]TIg_E-set
noIPR
unintegrated
unintegrated
PTHR10357\"[38-664]TPTHR10357
PTHR10357:SF27\"[38-664]TPTHR10357:SF27
SSF51011\"[568-668]TSSF51011
SSF51445\"[156-565]TSSF51445


","BeTs to 7 clades of COG0296COG name: 1,4-alpha-glucan branching enzymeFunctional Class: GThe phylogenetic pattern of COG0296 is ----yq-cebRh------in-Number of proteins in this genome belonging to this COG is 1","***** BP04137 (ENZYME BRANCHING STARCH 4-ALPHA-GLUCAN TRANSFE) with a combined E-value of 6.9e-215. BP04137A 60-80 BP04137B 104-115 BP04137C 167-206 BP04137D 207-244 BP04137E 245-273 BP04137F 279-314 BP04137G 315-336 BP04137H 360-413 BP04137I 425-471 BP04137J 480-520 BP04137K 522-569 BP04137L 578-632","Residues 577-641 are 52% similar to a (BRANCHING ENZYME 4-ALPHA-GLUCAN) protein domain (PD002218) which is seen in Q41740_MAIZE.Residues 329-544 are 62% similar to a (BRANCHING ENZYME STARCH TRANSFERASE) protein domain (PD004137) which is seen in GLGB_HUMAN.Residues 255-536 are 29% similar to a (ENZYME BRANCHING GLYCOGEN 4-ALPHA-GLUCAN TRANSFERASE) protein domain (PD000975) which is seen in GLGB_STRAU.Residues 155-217 are 63% similar to a (BRANCHING ENZYME 4-ALPHA-GLUCAN) protein domain (PD010989) which is seen in Q41058_PEA.Residues 218-250 are 84% similar to a (HYDROLASE GLYCOSIDASE PRECURSOR SIGNAL ENZYME) protein domain (PD000114) which is seen in Q40663_ORYSA.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Mon Apr 10 15:02:10 MDT 2000","Thu Mar 30 17:28:14 MST 2000","Mon Apr 10 15:02:10 MDT 2000","Thu Apr 19 16:30:15 MDT 2001","Thu Apr 19 16:30:15 MDT 2001","Thu Apr 19 16:30:15 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Mon Apr 10 15:02:10 MDT 2000","Thu Apr 19 16:30:15 MDT 2001","-45% similar to PDB:1M7X The X-ray Crystallographic Structure of Branching Enzyme (E_value = 1.3E_45);-51% similar to PDB:1EH9 CRYSTAL STRUCTURE OF SULFOLOBUS SOLFATARICUS GLYCOSYLTREHALOSE TREHALOHYDROLASE (E_value = 1.3E_16);-51% similar to PDB:1EHA CRYSTAL STRUCTURE OF GLYCOSYLTREHALOSE TREHALOHYDROLASE FROM SULFOLOBUS SOLFATARICUS (E_value = 1.3E_16);-49% similar to PDB:2BHU CRYSTAL STRUCTURE OF DEINOCOCCUS RADIODURANS MALTOOLIGOSYLTREHALOSE TREHALOHYDROLASE (E_value = 1.2E_14);-49% similar to PDB:2BHY CRYSTAL STRUCTURE OF DEINOCOCCUS RADIODURANS MALTOOLIGOSYLTREHALOSE TREHALOHYDROLASE IN COMPLEX WITH TREHALOSE (E_value = 1.2E_14);","","","Residues 172 to 548 (E-value = 1.2e-06) place PG1568 in the Alpha-amylase family which is described as Alpha amylase, catalytic domain (PF00128)","Thu Apr 19 16:30:15 MDT 2001","34541415","","","Larsson,C.T., Khoshnoodi,J., Ek,B., Rask,L. and Larsson,H. 1998. Molecular cloning and characterization of starch-branching enzyme II from potato. Plant Mol. Biol. 37(3): 505-511. PubMed: 9617817.Mizuno,K., Kawasaki,T., Shimada,H., Satoh,H., Kobayashi,E., Okumura,S., Arai,Y. and Baba,T. 1993. Alteration of the structural properties of starch components by the lack of an isoform of starch branching enzyme in rice seeds. J. Biol. Chem. 268(25): 19084-19091. PubMed: 8360192.Thon,V.J., Khalil,M. and Cannon,J.F. 1993. Isolation of human glycogen branching enzyme cDNAs by screening complementation in yeast. J. Biol. Chem. 268:(10): 7509-7513. PubMed: 8463281.","","Mon Apr 10 15:02:10 MDT 2000","1","","","PG1793" "PG1569","1886121","1888898","2778","ATGACCGAGCGACTTTTCCTTCTTGATGCTTATGCTCTCATCTTTCGTGCCTATTATGCTTTCATCCGTAGTCCGCGGATCGACTCTACCGGTCGTGACACCGGAGCTGTATTCGGCTTTGCCCTGACCTTATTGGATATACTGGAGAAGGAGTCGCCGGAGCATATCGCCGTGGTATTCGATCCTCCGGGAGGTAGTTTTCGTCATCGCGAGTATGCAGAGTACAAGGCTCAACGAGAGGAAACGCCGGAAGGTATTCGCATCGCCGTTCCGTTGATTAAAGAGATATTGGCAGCTTTCCGTATTCCTGCTGTAGAAGTGCCGGACTTTGAAGCAGACGACACGATAGGTACTTTGGCCAAACAAGCCGAAGAGCAAGGGCTTGCCGTCAGAATGGTAACGCCCGATAAGGATTTCGGCCAACTGGTGTCGGAGCGAATCAAGATCTATCGACCCAAGTCGGGTGGTGGCTATGAAACATGGGGGCCGGCAGAAGTCTGCGAAAAGTTCGGACTTTCCATCCCCGGGCAAATGATAGATTACCTCGGCCTCGTGGGAGACAGCTCGGACAATATACCCGGATGTAAAGGCATTGGAGCGAAAACAGCTGAGAAGCTACTGGCCGAGTATGGAAGCATAGACGGCATATACGCCCACCAAGATGAATTGAAAGGAGCTGTGGCCAAGAAAATTCAGGAGGGGGAAGAGCAAACGCGCTTCTCGCGCTACTTGGCCACTATCCGCACGGATGCTCCTATTGTCTTCGATTCCGAAGCCTATCGACGTACTTCGCCCGATATGGCAGCCGTTCGTGAATGCTTTGCTGCACTGGAATTTCGCACTTTGCTGAAACGGTTGGAGAGTACACCTACCGATGCCCCTGCGACAGACCTGTTTGCCGGCATGGTACAGGCACAAGAGCCTCCGACAGATTTGTTCGGAGAAGGCACCGATGCTACAGGACTTCCGCTAAAGAAACTGACAGACGTACCACACGAATATACGATTCTCAAAACCGAGGAAGAGATAGCGGATTGCATCCGAATGTTCTCTGCCACGCCTTGTTTCTCATTCGACACAGAGACCGACTCGAAAGATGCACTTCGGGCCAATATCGTTGCCATCACGCTATGTGCCGAGTCGGGACGGGCTTTCTTCATACCGCTGCCGGAAGACGAAGAAATCGGAAAACGCAGATTAGATCTCTTGCGTCCGCTTTTTGCCGATACAGCTATCGGCAAAGTCGGTCAGAATATGAAGTATGATATCCAAGTACTCTCCCGATATGGTATAGAAGTACGCGGACAGCTATTCGATACGATGATAGCACACTACCTCCTCTTTCCCGATCTCCGCCACAATATGGATGAGATGGCGGAGACGTTGCTGGGCTATTGCACCGTCCACTACTCGGATCTTGTCGGAAGCGACAAACAGGAGGTGCACATCCGTCAGGTACCATTGCAGAATCTGGCAGACTATGCCATGGAAGACGCCGATATTACTTGGCAGCTATATGAACGCCTCAATGCTATGCTCTCCGAGGCCGGGATGACCTCCTTATTCGAAAGTATAGAGATGCCACTCGTGCCGGTGCTTGCCAATATGGAACGCTCCGGCGTAAAGCTGGACACGGAGGTGCTCCGACGCACAGCTTCCGGACTTGGCGAAGAGATGCAGCGAATCGAAGATGAAATCTACCGTTTGGCCGGACACTCATTCAATATCAACAGTCCCTCTCAAGTGGGAACCGTGCTCTTCGAGGAACTGCAAATTACCGAAAAGCCCAAAAAGACGAAGTCCGGCAGCTACTCTACAAACGAAGAAATTCTGGTCAAGCTACAGGAAAAACATCCCATCGTGCGTCTCATACTGGACTATAGAGGAATCAAAAAACTACTCAGTACCTATGTAGAAGCTCTGCCGGAGATGCGCTACCCCGATGGTAAGCTGCATACCTCGTTCAATCAGACCGTCGCTACCACGGGACGTCTCTCCAGCAGCAATCCTAATCTGCAAAACATTCCGATCCGGACCGAAGTCGGGAGGGGGCTGAGGGCTGCTTTCGTACCGGACAATGACGAATGTATTTTCATGAGCGCAGACTATTCTCAGATCGAGCTGCGGCTGATGGCGCATCTGAGTGAAGACGAGAGCTTGATACAGGCTTTTCTCCATGGGGAAGACATCCACCGAGCCACAGCCTCCAAAATATACAGGCTGCCTCTTGTAGAAGTCACGGATGACATGCGCCGCCGAGCTAAAACGGCCAACTTCGGGATCATCTACGGCATCTCTGCTTTCGGGCTTAGCGAACGGCTCAATATCTCCCGTACAGAAGCCAAGGCCTTGATCGAAGGTTACTTTGCCTCTTACCCGGGGGTTAAAGCGTATATGGATCGGAGTATTGCCGAAGCCAAGCGACAGGGCTACGTCACCACACTGTTCGGTCGCAAGCGATTCCTCCGGGATATAAACAGTGCCAATGCCGTCGTCCGCGGCTATGCAGAGCGGAATGCCATCAATGCCCCTATACAAGGCTCTGCTGCCGACCTGATCAAGCTGGCGATGATCAGAATACACGAGGAAATCACTGAGCGTAAGCTGCGGAGCCGAATGATCCTGCAAGTGCACGACGAACTCAACTTCAACGTTCTTCGTCCTGAAGCTGCAGAAGTTCGCGAGCTTGTACGCTCGTGTATGGAGGGGGTGATGCCCTCTTTGCGTGTTCCTCTGATAGCCGAGATCGGCGAAGGAGCCAATTGGCTGGAGGCGCAC","5.10","-27.19","103732","MTERLFLLDAYALIFRAYYAFIRSPRIDSTGRDTGAVFGFALTLLDILEKESPEHIAVVFDPPGGSFRHREYAEYKAQREETPEGIRIAVPLIKEILAAFRIPAVEVPDFEADDTIGTLAKQAEEQGLAVRMVTPDKDFGQLVSERIKIYRPKSGGGYETWGPAEVCEKFGLSIPGQMIDYLGLVGDSSDNIPGCKGIGAKTAEKLLAEYGSIDGIYAHQDELKGAVAKKIQEGEEQTRFSRYLATIRTDAPIVFDSEAYRRTSPDMAAVRECFAALEFRTLLKRLESTPTDAPATDLFAGMVQAQEPPTDLFGEGTDATGLPLKKLTDVPHEYTILKTEEEIADCIRMFSATPCFSFDTETDSKDALRANIVAITLCAESGRAFFIPLPEDEEIGKRRLDLLRPLFADTAIGKVGQNMKYDIQVLSRYGIEVRGQLFDTMIAHYLLFPDLRHNMDEMAETLLGYCTVHYSDLVGSDKQEVHIRQVPLQNLADYAMEDADITWQLYERLNAMLSEAGMTSLFESIEMPLVPVLANMERSGVKLDTEVLRRTASGLGEEMQRIEDEIYRLAGHSFNINSPSQVGTVLFEELQITEKPKKTKSGSYSTNEEILVKLQEKHPIVRLILDYRGIKKLLSTYVEALPEMRYPDGKLHTSFNQTVATTGRLSSSNPNLQNIPIRTEVGRGLRAAFVPDNDECIFMSADYSQIELRLMAHLSEDESLIQAFLHGEDIHRATASKIYRLPLVEVTDDMRRRAKTANFGIIYGISAFGLSERLNISRTEAKALIEGYFASYPGVKAYMDRSIAEAKRQGYVTTLFGRKRFLRDINSANAVVRGYAERNAINAPIQGSAADLIKLAMIRIHEEITERKLRSRMILQVHDELNFNVLRPEAAEVRELVRSCMEGVMPSLRVPLIAEIGEGANWLEAH","1886121 1888898","TIGR ID: PG1794","DNA polymerase I","Cytoplasm","Residues 3-926 have 43% similarity to AF028719, Rhodothermus sp. DNA polymerase type I.Residues 5-926 have 42% similarity to AE005617, E. coli DNA polymerase I.Residues 7-926 have 40% similarity to AF063186, R. erythropolis DNA polymerase I.This sequence is similar to BT3260.","
InterPro
IPR001098
Family
DNA-directed DNA polymerase
PF00476\"[543-925]TDNA_pol_A
SM00482\"[682-889]TPOLAc
PS00447\"[751-770]?DNA_POLYMERASE_A
InterPro
IPR002298
Family
DNA polymerase A
PR00868\"[651-673]T\"[674-689]T\"[697-720]T\"[727-740]T\"[751-776]T\"[788-799]T\"[810-821]T\"[842-858]T\"[872-885]TDNAPOLI
TIGR00593\"[5-926]Tpola
InterPro
IPR002421
Domain
5'-3' exonuclease
PF01367\"[175-272]T5_3_exonuc
PF02739\"[3-170]T5_3_exonuc_N
SM00475\"[3-263]T53EXOc
InterPro
IPR002562
Domain
3'-5' exonuclease
PF01612\"[334-514]T3_5_exonuc
SM00474\"[334-514]T35EXOc
InterPro
IPR003583
Domain
Helix-hairpin-helix DNA-binding, class 1
SM00278\"[190-209]THhH1
InterPro
IPR008918
Domain
Helix-hairpin-helix motif, class 2
SM00279\"[175-210]THhH2
SSF47807\"[174-290]T5_3_exo_C
InterPro
IPR012337
Domain
Polynucleotidyl transferase, Ribonuclease H fold
SSF53098\"[328-515]TRNaseH_fold
noIPR
unintegrated
unintegrated
G3DSA:1.10.150.20\"[706-849]TG3DSA:1.10.150.20
G3DSA:1.20.1060.10\"[539-654]TG3DSA:1.20.1060.10
G3DSA:3.30.420.10\"[332-538]TG3DSA:3.30.420.10
G3DSA:3.40.50.1010\"[2-209]TG3DSA:3.40.50.1010
PTHR10133\"[7-283]T\"[336-456]T\"[481-926]TPTHR10133
SSF56672\"[517-926]TSSF56672
SSF88723\"[1-171]TSSF88723


","BeTs to 12 clades of COG0749COG name: DNA polymerase I - 3'-5' exonuclease and polymerase domainsFunctional Class: LThe phylogenetic pattern of COG0749 is ----yqvcebrhuj--olinxNumber of proteins in this genome belonging to this COG is 1","***** IPB001098 (Replicative DNA polymerase) with a combined E-value of 1.2e-84. IPB001098A 7-16 IPB001098B 74-86 IPB001098C 180-191 IPB001098D 650-678 IPB001098E 702-735 IPB001098F 751-764 IPB001098G 840-858 IPB001098H 869-889","Residues 4-286 are 45% similar to a (DNA HYDROLASE REPAIR I) protein domain (PD002066) which is seen in Q9ZIG3_BBBBB.Residues 340-509 are 40% similar to a (PROTEIN DNA POLYMERASE HYDROLASE) protein domain (PD002549) which is seen in DPO1_ECOLI.Residues 574-925 are 53% similar to a (DNA POLYMERASE TRANSFERASE DNA-DIRECTED) protein domain (PD001497) which is seen in DPO1_BACST.Residues 521-572 are 48% similar to a (DNA POLYMERASE I TRANSFERASE) protein domain (PD002801) which is seen in DPO1_THECA.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Apr 17 17:08:09 MDT 2001","Mon Dec 22 10:17:04 2003","Mon Dec 22 10:17:04 2003","Fri Mar 2 09:50:19 MST 2001","Fri Mar 2 09:50:19 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Mar 2 09:50:19 MST 2001","-66% similar to PDB:1D9D CRYSTALL STRUCTURE OF THE COMPLEX OF DNA POLYMERASE I KLENOW FRAGMENT WITH SHORT DNA FRAGMENT CARRYING 2'-0-AMINOPROPYL-RNA MODIFICATIONS 5'-D(TCG)-AP(AUC)-3' (E_value = 4.1E_146);-66% similar to PDB:1D9F CRYSTAL STRUCTURE OF THE COMPLEX OF DNA POLYMERASE I KLENOW FRAGMENT WITH DNA TETRAMER CARRYING 2'-O-(3-AMINOPROPYL)-RNA MODIFICATION 5'-D(TT)-AP(U)-D(T)-3' (E_value = 4.1E_146);-66% similar to PDB:1DPI STRUCTURE OF LARGE FRAGMENT OF ESCHERICHIA COLI DNA POLYMERASE I COMPLEXED WITH D/TMP (E_value = 4.1E_146);-66% similar to PDB:1KFD CRYSTAL STRUCTURES OF THE KLENOW FRAGMENT OF DNA POLYMERASE I COMPLEXED WITH DEOXYNUCLEOSIDE TRIPHOSPHATE AND PYROPHOSPHATE (E_value = 4.1E_146);-66% similar to PDB:1KFS DNA POLYMERASE I KLENOW FRAGMENT (E.C.2.7.7.7) MUTANT/DNA COMPLEX (E_value = 4.1E_146);","","","Residues 3 to 170 (E-value = 4.7e-69) place PG1569 in the 5_3_exonuc_N family which is described as 5'-3' exonuclease, N-terminal resolvase-like domain (PF02739)Residues 175 to 272 (E-value = 5.7e-40) place PG1569 in the 5_3_exonuc family which is described as 5'-3' exonuclease, C-terminal SAM fold (PF01367)Residues 334 to 514 (E-value = 7.9e-33) place PG1569 in the 3_5_exonuc family which is described as 3'-5' exonuclease (PF01612)Residues 543 to 925 (E-value = 9.8e-172) place PG1569 in the DNA_pol_A family which is described as DNA polymerase family A (PF00476)","Mon Dec 22 10:17:04 2003","34541416","","","","","","1","","","PG1794" "PG1570","1889869","1889051","819","ATGAAAAAAGCATTACTTATTGGTGCTGCTCTTTTGGGAGCAGTCAGTTTTGCAAGTGCTCAGTCTTTGAGCACAATCAAAGTACAGAACAATTCAGTACAGCAACCTCGTGAGGAAGCCACTATTCAGGTTTGTGGAGAATTGGCAGAGCAAGTTGACTGCATTGGGACAGGTAATTCTGCAATCATAGCCGCTGCAGCGAAATTTGAAAGCGATGATCTCGAAAGCTATGTTGGCTGGGAGATCATGAGTGTTGATTTCTTCCCTGGATATAAAGCGTGCAAGTACACATCTGCAGTCTGGGCTGATGATATGACCATTTTGGGCCAATCAGAAGATAGTGATCCCGAAATGCAGACTATCAACAATCTTGCTCTCAAGACTAGTGTCAAGATTGAAGCCGGCAAGAATTACATAGTTGGTTATATTGCTAATACCGCAGGTGGACATCCTATCGGATGTGATCAGGGCCCTGCCGTTGATGGTTATGGAGATTTGGTTTCTATATCAGAAGATGGTGGTGCTACTTTCCCTCCGTTCGAATCTCTTCATCAAGCAGTTCCTACCTTAAATTACAACATCTATGTCGTTGTTCATTTGAAGAAGGGTGAAGGTGTTGAGGCTGTTCTTACCAACGACAAGGCTAATGCTTATGTTCAGAATGGCGTTATCTATGTAGCCGGAGCTAATGGTCGTCAGGTATCTCTGTTCGACATGAACGGTAAGGTTGTTTATACCGGCGTTAGCGAAACGATTGCAGCTCCTCAGAAGGGCATGTATATCCTCCGTGTAGGTGCTAAGAGCATCAAGCTGGCTATC","4.60","-9.46","28842","MKKALLIGAALLGAVSFASAQSLSTIKVQNNSVQQPREEATIQVCGELAEQVDCIGTGNSAIIAAAAKFESDDLESYVGWEIMSVDFFPGYKACKYTSAVWADDMTILGQSEDSDPEMQTINNLALKTSVKIEAGKNYIVGYIANTAGGHPIGCDQGPAVDGYGDLVSISEDGGATFPPFESLHQAVPTLNYNIYVVVHLKKGEGVEAVLTNDKANAYVQNGVIYVAGANGRQVSLFDMNGKVVYTGVSETIAAPQKGMYILRVGAKSIKLAI","1889869 1889051","Veith et al. (2002) identified this protein by two-dimensional gel electrophoresis and peptide mass fingerprinting of outer membranes prepared from strain W50. They present the following results: This protein together with the C-terminal domain of RgpA, PG1838 and PG0461 migrate as vertical streaks on 2D-PAGE at a MW 13-42 kDa higher than that calculated from their gene sequences. The electrophoretic behaviour of these proteins together with their immunoreactivity with a monoclonal antibody that recognises LPS is consistent with a modification that could anchor the proteins to the outer membrane. The proposed LPS-attachment site is in the conserved C-terminal 50 amino acid residues of each of these proteins. Based on signal peptide sequence comparisons to PG0626, PG0627, PG1592, PG1840, PG0836, PG0023, PG1893, the mature N-terminus of this protein is predicted to be pyroglutamate.TIGR ID: PG1795","LPS-modified surface protein P27","Extracellular, Periplasm, Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
noIPR
unintegrated
unintegrated
signalp\"[1-20]?signal-peptide
tmhmm\"[5-25]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Thu Feb 7 18:05:57 2002","Mon Feb 11 12:21:08 2002","","Fri Mar 2 10:57:31 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 59-270 of PG1570 have 26% similarity to PG1720, a hypothetical protein.","Tue Jun 5 10:18:23 MDT 2001","Fri Mar 2 10:57:31 MST 2001","-47% similar to PDB:1WU7 Crystal structure of histidyl-tRNA synthetase from Thermoplasma acidophilum (E_value = );-35% similar to PDB:1CQX Crystal structure of the flavohemoglobin from Alcaligenes eutrophus at 1.75 A resolution (E_value = );-44% similar to PDB:1EBD DIHYDROLIPOAMIDE DEHYDROGENASE COMPLEXED WITH THE BINDING DOMAIN OF THE DIHYDROLIPOAMIDE ACETYLASE (E_value = );-88% similar to PDB:1Z0K Structure of GTP-Bound Rab4Q67L GTPase in complex with the central Rab binding domain of Rabenosyn-5 (E_value = );","","","No significant hits to the Pfam 11.0 database","Tue Jun 5 10:18:23 MDT 2001","34541417","","Veith,P., Talbo,G., Slakeski,N., Dashper,S., Moore,C.,Paolini,R., Reynolds,E., Major outer membrane proteins and proteolytic processing of RgpA, and Kgp of Porphyromonas gingivalis W50, Biochem J. 2002 (in press).","","Thu Feb 7 16:20:38 2002","","1","","","PG1795" "PG1571","1890156","1893038","2883","ATGAAGAAACTTTTCCCATTATTATTACTCATATTGTCGATTTTGGTCGGATGTGGAAAAAAAGAAAAACACTCTGTAACTGAAATCGCCCGAGAGAAAAAGCGTATTACTGCATTGCTGTACGAAAAAGAACTCCCCACTGATTCTGTTAAACAGCTTTACGAGAACAGCGTACAGAACAAGAACCTTGTGGGACAAATGTTATTCGCGATCGAGGTCGGCAAACGGATGCGTAATATGTCCCAATACACAGATGCGATGCTATATCACCAAAAAGGGTTGAACGCTGCATTGAATCTAAGGGACACCATCGTAGCCGCACAAGCATGGAATCATCTCGGAACGGATAGCCGTCGTATCGGTGCTTTGGCAGAAGCTTCGGATTATCATTACAAGGCTCTTTCCTTGATAGAATCTTTTAGCGGAAACCAGAATAGGCCTGCGATCAAAGCCAGATCGGCGGCCCTGAACGGCATCGGCAACATCAATCTTGAGTTAGGATACCATGATGAGGCCGAAAAGAATTTCCTGAAAGCACTGCAAGGTGAGAAAGAACTCGACAGTCCTCTCGGGCAAGCTATCAACTATGCGAACCTCGGACGTATCTATCGACAACGCAAAGAATACGACAAGGCTCGTACCTACTTCCTCTTGTCTCTGGAGCAGAACAATATGGCAGAGAATCTGATGGGTATCGGACTCTGTAGCATCAATCTCGGAGAAGTAGACGAAGAAAAAGGGGATTATCAAAAGGCTTTGCAAGAGTATGCCACGGCATACAAACTGATGGAACAGTTGTCCGATCGATGGCACTGGCTGAATTCCTGTATCCCGATGGCACGTATCAATCTCAAACAAGGTAACGAAAGGCTCTACCAGCATTTCATTTCTTTGGCCGAAGGGACTGCGAAAGAAATTAATTCGACTTCACATCTGATAGAAATATACAATCTTCAATACGAGAATCTCGAGCGTAAAAAAGAATACAAACAAGCCCTCGAAGCATTCTGTCTGAGCAAGACGTTGAGCGACAGCATGTCCATTGCGCACAAGGTCAGCAGCATACAAGAAACGCGATTCAACTACGAACGAAACAAGTCCCAAAAAGAGCTTGAAGAAATACAGCAAGTAAGCAAGGCAAAACAAGAGAAATCGAAGTTTATCCTCTTGAGCACTCTTTTTGCCCTTTTCATCTCGATTCTTTTGATTTCTGTTCTGACATATGCATACCGTCAGGGCAAGAAGCATAACAAGCTGATCAAAGAGACGGATAAACTTCGCTCCGGCTTTTTCACCGGTATTACACACGAATTTCGTACGCCTATCACCGTCATACAAGGTTTGAATGAGAAAATGAGTTCAAGTCCTGATCTCCAAGCATCGGACAGAACCGAGCTGCACAAGATAATAGACAGACAGAGTAGCCATATGCTGAATTTGGTGAACCAGCTGTTGGATATTTGCAAGATCAGAAGCGGAGTATCCACGCCCGAATGGCGCAATGGCGACATCGTCTCCTTCGTACAGATTCTCATCGATTCGTTTGCACCATACGCACAGGCTCAAGACATAACCTTGGAGCTACAACCCGAGAGCAAACCTATTGTCGTGGACTTCGTCCCCTCCTACTTGCAAAAAATCATATCCAATCTTTTGTCCAATGCCATCAAGTATTCTTTAGCCGGAGGGAGAGTGGTCATATCTCTGGCAAAAACCAAGAATGAAAAAAATCTGATCATACGCGTTGCAGACAATGGCATAGGAATAGATAAAACTGATCAGGCTCATATCTTCGACATCTTCTATCGAGGACAGTCCGCTACCGAAAAGCATGGATCAGGCGTCGGACTCTCGTTTACCAATATACTGGTCGAAAACCTTCGAGGTACGATCAAAGTGGAAAGCCAGCCGGGGAAAGGAAGTGCCTTCACCATCAGTATTCCTACACAAAACCAGTCCTCTTCGGCAGAGATTCTTCCTTGGCTACCCTCCTCCGATGACATTGTCATGCCTGTCCACATCGCGCCCGATGACTCACCGACATCTCCGATGGTAGCAGCTCTGAATCATCGCTTCGAGGACGAACGTCCGACCATACTGCTCGTCGAGGACAATAAGGATATCAACCTGCTCGTCAAACTACTCCTTTGCGATCGCTACAATGTGCTATCCGCCGCAAACGGAAAAGAGGGTATAGCCCTCGCTACCGAGCATATTCCCGACATTATCATTACGGATATTATGATGCCGATAATGGATGGGATAGAAATGACAATCCGGATGAAGCAATCGCCTCTGCTCTGTCACATTCCCATTGTCGCTTTGACGGCCAAGAGTACCGAACAGGACAGATTGGAAGGAATCAAAAGCGGTGTAGTCTCTTATCTATGCAAGCCATTCTCTCCGGAGGAGCTTTTGATGCGGATCGAGCAGCTTCTGAAAGACCGTGAGTTGCTCAAGAAGTTCTATATGCAAAAACTCATGCTGGATCGGAAGCCGGAGGAGGAGCCTCAACCGATAGATGACAGCAGTATGCAGTTTCTCCTTGCTGCCAAAGATGCAGTGTCCGGTGGAATCAAACAAAATCCGGATTTTTCCGCTCAAGACTTGGCCGAAAAAATGTGCATGAGTCCATCCCAACTCAACAGAAAGCTCACGAGTGTCGTAGGTTGCTCCACCATCGGCTACATACAGCAGATCAAGATAAAATTGGCCTGCAAGCTCCTTGCCGATGAGAGCAAAAACATCTCCGACATTAGCATTGAGGCAGGCTTTTCGGATCCGGCTTACTTCTCTCGCACCTTCAAACGCTACATGAACTGCTCTCCCTCCCAATATCGGCAAAAACTCCTTGCCATGCCGGGGAGCGACAAGGAGACAGTT","7.90","7.11","108244","MKKLFPLLLLILSILVGCGKKEKHSVTEIAREKKRITALLYEKELPTDSVKQLYENSVQNKNLVGQMLFAIEVGKRMRNMSQYTDAMLYHQKGLNAALNLRDTIVAAQAWNHLGTDSRRIGALAEASDYHYKALSLIESFSGNQNRPAIKARSAALNGIGNINLELGYHDEAEKNFLKALQGEKELDSPLGQAINYANLGRIYRQRKEYDKARTYFLLSLEQNNMAENLMGIGLCSINLGEVDEEKGDYQKALQEYATAYKLMEQLSDRWHWLNSCIPMARINLKQGNERLYQHFISLAEGTAKEINSTSHLIEIYNLQYENLERKKEYKQALEAFCLSKTLSDSMSIAHKVSSIQETRFNYERNKSQKELEEIQQVSKAKQEKSKFILLSTLFALFISILLISVLTYAYRQGKKHNKLIKETDKLRSGFFTGITHEFRTPITVIQGLNEKMSSSPDLQASDRTELHKIIDRQSSHMLNLVNQLLDICKIRSGVSTPEWRNGDIVSFVQILIDSFAPYAQAQDITLELQPESKPIVVDFVPSYLQKIISNLLSNAIKYSLAGGRVVISLAKTKNEKNLIIRVADNGIGIDKTDQAHIFDIFYRGQSATEKHGSGVGLSFTNILVENLRGTIKVESQPGKGSAFTISIPTQNQSSSAEILPWLPSSDDIVMPVHIAPDDSPTSPMVAALNHRFEDERPTILLVEDNKDINLLVKLLLCDRYNVLSAANGKEGIALATEHIPDIIITDIMMPIMDGIEMTIRMKQSPLLCHIPIVALTAKSTEQDRLEGIKSGVVSYLCKPFSPEELLMRIEQLLKDRELLKKFYMQKLMLDRKPEEEPQPIDDSSMQFLLAAKDAVSGGIKQNPDFSAQDLAEKMCMSPSQLNRKLTSVVGCSTIGYIQQIKIKLACKLLADESKNISDISIEAGFSDPAYFSRTFKRYMNCSPSQYRQKLLAMPGSDKETV","1890138 1893038","TIGR ID: PG1797","adenylate cyclase","Inner membrane, Outer membrane, Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 410-812 are 31% similar to dbj|BAA22997.1| adenylate cyclase of Spirulina platensis, residues 374-821 and 694-820 are 30% and 35% similar (respectively) to fragments (residues 464-922 and 6-132) of dbj|BAA14000.1| adenylate cyclase of Anabaena sp., residues 420-813 and 544-655 are 29% and 31% similar (respectively) to fragments (residues 174-567 and 867-978) of gb|AAG09417.1|AF180147_9 bZIP histidine kinase TobS of Pseudomonas putida.","
InterPro
IPR000005
Domain
Helix-turn-helix, AraC type
PR00032\"[916-931]T\"[931-947]THTHARAC
PF00165\"[904-948]THTH_AraC
SM00342\"[864-947]THTH_ARAC
PS00041\"[901-943]THTH_ARAC_FAMILY_1
PS01124\"[849-949]THTH_ARAC_FAMILY_2
InterPro
IPR001440
Repeat
Tetratricopeptide TPR_1
PF00515\"[107-140]T\"[153-186]TTPR_1
InterPro
IPR001789
Domain
Response regulator receiver
PD000039\"[698-813]TResponse_reg
PF00072\"[697-810]TResponse_reg
SM00448\"[697-809]TREC
PS50110\"[698-813]TRESPONSE_REGULATORY
InterPro
IPR003594
Domain
ATP-binding region, ATPase-like
G3DSA:3.30.565.10\"[496-661]TATP_bd_ATPase
PF02518\"[539-650]THATPase_c
SM00387\"[539-651]THATPase_c
SSF55874\"[482-649]TATP_bd_ATPase
InterPro
IPR003661
Domain
Histidine kinase A, N-terminal
PF00512\"[426-493]THisKA
SM00388\"[426-493]THisKA
InterPro
IPR004358
Domain
Histidine kinase related protein, C-terminal
PR00344\"[578-592]T\"[596-606]T\"[611-629]T\"[635-648]TBCTRLSENSOR
InterPro
IPR005467
Domain
Histidine kinase
PS50109\"[433-651]THIS_KIN
InterPro
IPR009057
Domain
Homeodomain-like
SSF46689\"[900-961]THomeodomain_like
InterPro
IPR009082
Domain
Histidine kinase, homodimeric
SSF47384\"[416-489]THis_kin_homodim
InterPro
IPR011006
Domain
CheY-like
SSF52172\"[694-884]TCheY_like
InterPro
IPR011990
Domain
Tetratricopeptide-like helical
G3DSA:1.25.40.10\"[71-276]TTPR-like_helical
InterPro
IPR012287
Domain
Homeodomain-related
G3DSA:1.10.10.60\"[900-948]THomeodomain-rel
InterPro
IPR013026
Domain
Tetratricopeptide region
SM00028\"[107-140]T\"[153-186]T\"[193-226]T\"[233-266]TTPR
PS50005\"[107-140]T\"[153-186]T\"[193-226]T\"[233-266]TTPR
PS50293\"[107-140]T\"[153-266]TTPR_REGION
InterPro
IPR013105
Repeat
Tetratricopeptide TPR_2
PF07719\"[193-226]TTPR_2
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.2300\"[686-823]TG3DSA:3.40.50.2300
PTHR23283\"[7-28]T\"[338-817]TPTHR23283
PTHR23283:SF21\"[7-28]T\"[338-817]TPTHR23283:SF21
PS51257\"[1-18]TPROKAR_LIPOPROTEIN


","BeTs to 11 clades of COG0642COG name: Sensory transduction histidine kinasesFunctional Class: TThe phylogenetic pattern of COG0642 is AMT-YQVCEBRHUJ--O-inXNumber of proteins in this genome belonging to this COG is 6","***** IPB000005 (AraC type helix-turn-helix domain) with a combined E-value of 1.8e-14. IPB000005 916-947***** PF00072 (Response regulator receiver domain) with a combined E-value of 1.6e-08. PF00072A 741-754 PF00072B 791-800***** BP04994 (KINASE DEHYDROGENASE PYRUVATE L) with a combined E-value of 1.6e-06. BP04994E 534-563 BP04994F 565-608 BP04994G 609-662","Residues 699-813 are 33% similar to a (PROTEIN SENSORY TRANSDUCTION PHOSPHORYLATION REGULATOR) protein domain (PD000039) which is seen in O15783_DICDI.Residues 865-949 are 35% similar to a (PROTEIN TRANSCRIPTION REGULATION DNA-BINDING) protein domain (PD000394) which is seen in O31249_BBBBB.Residues 435-517 are 39% similar to a (KINASE PROTEIN SENSORY TRANSDUCTION SENSOR HISTIDINE) protein domain (PD000142) which is seen in P94183_ANASP.Residues 548-648 are 46% similar to a (KINASE PROTEIN SENSORY TRANSDUCTION HISTIDINE SENSOR) protein domain (PD000064) which is seen in Q55932_SYNY3.Residues 442-651 are 24% similar to a (REGULATOR OF S ARMING) protein domain (PD111987) which is seen in O85661_PROMI.","","Thu Jun 14 12:15:34 MDT 2001","","Thu Jun 14 12:15:34 MDT 2001","Thu Jun 14 12:15:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:15:34 MDT 2001","Thu Jun 14 12:15:34 MDT 2001","","Tue Jun 26 09:29:57 MDT 2001","Fri Mar 2 11:11:04 MST 2001","Tue Jun 26 09:29:57 MDT 2001","Fri Mar 2 11:11:04 MST 2001","Tue Jun 26 09:29:57 MDT 2001","Tue Jun 26 09:29:57 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 170-617 have 25% similarity to PG1255, a conserved hypothetical protein.Residues 694-814 have 40% similarity to PG0970,a probable inner membrane signal-transducing protein.Residues 387-650 have 26% similarity to PG0045, histidine kinase sensor protein.Residues 699-814 have 34% similarity to PG0650, a response regulator.Residues 406-635 have 24% similarity to PG0649, a probable sensory protein kinase; histidine kinase.","Tue Jun 26 09:29:57 MDT 2001","Fri Mar 2 11:11:04 MST 2001","-54% similar to PDB:2C2A STRUCTURE OF THE ENTIRE CYTOPLASMIC PORTION OF A SENSOR HISTIDINE KINASE PROTEIN (E_value = 2.9E_25);","","","Residues 426 to 493 (E-value = 8.3e-16) place PG1571 in the HisKA family which is described as His Kinase A (phosphoacceptor) domain (PF00512)Residues 539 to 650 (E-value = 3.1e-35) place PG1571 in the HATPase_c family which is described as Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (PF02518)Residues 697 to 817 (E-value = 2.5e-32) place PG1571 in the Response_reg family which is described as Response regulator receiver domain (PF00072)Residues 904 to 948 (E-value = 2.6e-15) place PG1571 in the HTH_AraC family which is described as Bacterial regulatory helix-turn-helix proteins, araC family (PF00165)","Tue Jun 26 09:29:57 MDT 2001","34541418","","","Kasahara,M., Yashiro,K., Sakamoto,T. and Ohmori,M. 1997. The Spirulina platensis adenylate cyclase gene, cyaC, encodes a novel signal transduction protein. Plant Cell Physiol. 38 (7): 828-836. PubMed: 9297847.","","Wed Mar 21 08:47:19 MST 2001","1","","","PG1797" "PG1572","1894338","1893124","1215","ATGAAAAAAACAACCATTATTTCTTTGATTGTCTTCGGTGCTTTCTTTGCAGCCGTGGGCCAAACCAAGGACAATTCTTCTTACAAACCTTTTTCGAAAGAAGATATTGCCGGAGGAGTTTACTCTCTCCCGACTCAAAATCGTGCGCAGAAGGACAATGCCGAGTGGCTTCTTACAGCGACCGTCTCCACAAACCAGTCTGCAGATACTCACTTTATCTTCGATGAGAACAACCGCTATATCGCTCGTGACATAAAAGCCAATGGGGTAAGAAAATCCACGGACTCCATTTACTACGATGCCAACGGGCGAATATCGCATGTGGATCTTTATATCTCGTTCAGTGGCGGAGAGCCTGCACTCGACACCCGATTCAAGTACACCTATGATGACGAGGGAAAGATGACCGTGAGGGAAGTATTCATGCTGGTAATGGATCCGAATACACCTATCTCACGCTTGGAATATCATTATGATGCACAGGGCAGACTGACCCACTGGATTTCTTTTGCTTTCGGGGCAGAATCCCAAAAGAATACGTATCACTATAATGAAAAAGGTCTGTTGGTCAGCGAAGTGCTGAGCAATGCAATGGGGACAACCTATTCAGACACCGGCAAAACGGAATACAGCTATGACGATGCAGATAATATGGTGAAGGCCGAGTACTTCGTCGTCCAGCAAGGAAAGGCATGGCAAGTACTCAAAAGAGAGGAATACACCTATGAGGACAATATCTGCATACAATATTTGGCTATTAACGGTACCGACACAAAGGTGTACAAGCGAGACATCGAGAGCGATAAGTCCATCTCCGCAAATGTCATTGACATTCCGTCAATGCCGGAACAGACCTGGCCTAATATGTACGGATTCAACGCAAAGCGACTGAAAGAGACTTATTCCTCCTACGAAGGAGATGTGGCTACTCCTATATTCGACTATATCTATACGTACAAGGCTCTTACCTCAATGGCAACACCTTCGACAGAAGCTCAGGTAGCAGTCTATCTCAATCCGTCAACGGACCGGTTAGTGATTCTGGCCAACGGCATCACACATCTGAGCATGTACGACTTGCAGGGTAAGCTTATCCGTGATTGTGCCTTGAGCGGCGATAAGGTGGAAATGGGTGTCGGATCTTTGACCAAAGGGACATACCTGCTTAAAGTGAATACGGATCAGGGAGCCTTTGTGAGAAAAGTCGTGATTCGA","5.40","-6.63","45689","MKKTTIISLIVFGAFFAAVGQTKDNSSYKPFSKEDIAGGVYSLPTQNRAQKDNAEWLLTATVSTNQSADTHFIFDENNRYIARDIKANGVRKSTDSIYYDANGRISHVDLYISFSGGEPALDTRFKYTYDDEGKMTVREVFMLVMDPNTPISRLEYHYDAQGRLTHWISFAFGAESQKNTYHYNEKGLLVSEVLSNAMGTTYSDTGKTEYSYDDADNMVKAEYFVVQQGKAWQVLKREEYTYEDNICIQYLAINGTDTKVYKRDIESDKSISANVIDIPSMPEQTWPNMYGFNAKRLKETYSSYEGDVATPIFDYIYTYKALTSMATPSTEAQVAVYLNPSTDRLVILANGITHLSMYDLQGKLIRDCALSGDKVEMGVGSLTKGTYLLKVNTDQGAFVRKVVIR","1894392 1893124","TIGR ID: PG1798","immunoreactive 46 kDa antigen PG99","Outer membrane, Extracellular","PG1572 was previosuly sequenced and submitted as AF145801,P. gingivalis immunoreactive 46 kDa antigen PG99 by Ross,B.C., Barr,I., Patterson,M., Agius,C., Rothel,L., Margetts,M., Hocking,D. and Webb,E. .","
noIPR
unintegrated
unintegrated
signalp\"[1-22]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 12:15:50 MDT 2001","","Thu Jun 14 12:15:50 MDT 2001","Thu Jun 14 12:15:50 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:15:50 MDT 2001","Thu Jun 14 12:15:50 MDT 2001","","","Fri Mar 2 11:15:38 MST 2001","Fri Mar 2 11:15:38 MST 2001","Fri Mar 2 11:15:38 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 89-405 have 27% similarity to PG0592, hypothetical protein.","Tue Jun 26 09:20:02 MDT 2001","Fri Mar 2 11:15:38 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Jun 26 09:20:02 MDT 2001","34541419","","Ross,B.C., Barr,I., Patterson,M., Agius,C., Rothel,L., Margetts,M., Hocking,D. and Webb,E., Porphyromonas gingivalis polypeptides and nucleic acids, Patent: Australia (AU 98/01023)-PCT 10-DEC-1998","","Fri Mar 2 11:15:38 MST 2001","","1","","","PG1798" "PG1573","1895089","1895676","588","ATGGACTCTAAAATCCAGGAACTAACCGACAAAATTTATCGCGAAGGTGTCGAAAAAGGCAACGAGCAGGCCGCGAAAATTATCGCTGAGGCTGAGGCCAAAAGCGCAGAGACGATCAATAATGCCAAGGCTGAAGCTGAACGCATTGTGAGCGATGCAAAGAAGAAGGCGACAGAATTTCAGCAGAATACCGAATCCGAGTTGAAGCTTTATGCTGGTCAGATGCTGGAGTCGCTCAAGAGTACCATTGTGGATCAAATTTCCGGAGAGATCGTTTCGGCCAACGTAAAAGCGGCATCGACCAACCCCGAATTCATGCAACAGATGATGCTCGATATGGCCAAGAATTGGGCTTCGGGCGAGAGCATCATTATCTCTACACAAAACGCCACTGCACTTCAGTCCTATTTCGAAAGCAATGCCAAGGACTTACTCAACAATAAGGTGACGATCAAAGAGGTGAACAACCAACCGGTGGCCTATACTATCCAGCCCAAAGATGGCTCATACAAGATAGAATTCGGTGAGGAAGAGTTCATCAATCTCTTCAAGAGTTTCTTGCGCCCCAGGCTGGTGGAAATGCTTTTC","4.70","-6.98","21930","MDSKIQELTDKIYREGVEKGNEQAAKIIAEAEAKSAETINNAKAEAERIVSDAKKKATEFQQNTESELKLYAGQMLESLKSTIVDQISGEIVSANVKAASTNPEFMQQMMLDMAKNWASGESIIISTQNATALQSYFESNAKDLLNNKVTIKEVNNQPVAYTIQPKDGSYKIEFGEEEFINLFKSFLRPRLVEMLF","1895089 1895676","Other ATP synthase subunits are downstream and include PG1575 (A), PG1576 (B), PG1577 (D), PG1578 (I) and PG1579 (K).TIGR ID: PG1801","ATP synthase subunit E","Cytoplasm","One weak hit in gapped BLAST; e.g. residues 1-195 are 21% similar to gb|AAC66482.1| V-type ATPase, subunit E, putative of Borreliaburgdorferi.","
noIPR
unintegrated
unintegrated
SSF47655\"[133-190]TSTAT
SSF81573\"[25-81]TSSF81573


","BeTs to 3 clades of COG1390COG name: Archaeal/vacuolar type H+-ATPase subunit EFunctional Class: CThe phylogenetic pattern of COG1390 is amtky----------------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 42-195 are 22% similar to a (V-TYPE ATPASE SUBUNIT E) protein domain (PD107797) which is seen in O51123_BORBU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Thu Mar 28 10:24:13 2002","Thu Mar 28 10:30:56 2002","Tue Mar 27 17:18:32 MST 2001","Thu Mar 28 10:24:01 2002","","Tue Mar 27 17:18:32 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 27 17:18:32 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Mar 27 17:18:32 MST 2001","34541421","","","","","","1","","","PG1801" "PG1574","1895683","1896618","936","ATGGCCAAATATTACGCCACTGTAGCCGGTCTGCCCAACATCACTGTGGAAGATCGGAAATTGCCGTTTACGTCCTTGCAGTTTCTGCAGGAGCTTAGGCCTATCCTGAGTCGAACGGATAGCAAGCTCTTCGATCTCCTGCTTTGGGAGCAGGAGAATCAGTTCCTTCTTCGCTATCTGGAGGACAGCGAAAAGGCCAAGGCCGAGGAGTCCCGGCCGACTCTCTTCTCTTATGATACGCTGGATGGCATCATAGCTGCCTATCGGGAGAAACGTGTCATGCCCCGTATGGATTCGTTGCCGGAGCATTTCCGCACTTTTTTGTCGGAAAAGCTGACTGAGATGTTTCGCGAGGAAGAAGAAGGAGACGTTGGACAAATGTCCCTGTCGGACACTGAAGCCGAAGAAGGAAAAGCACGCCTGCCAATCTCCGACGAAGATCGTCTGGCCATGTACTATTATGAATATGCCATGAAATGCGGCAACGACTTCCTGGAAGAATGGTTTGCCCTGAATCTGCATATCAAGAACATCTTGGCCGCGATCACGTGTCGCAAGTTGGGCTGGAATCCGATCAATTATATTGTCGGTACCGGCGAAATAGAAGACAAATTGCGTACGTCACGGGCTCGCGACTTCGACTTGGGCGAAGAACTGCCCTATCTGTCCACACTCTTTTCTGTCGGTGAGGAGACGGACATTACCAAACGCGAACGTCTGCTTGATGTGATTCGTTGGGAGTGGCTCGAAGAGTCGGTATTCAACCGCGTATTCACCGTAGAGCGTTTGCTCTGCTATTATTTGGAGCTGGCGATCATCGAGCGTTGGGTGAAGTTGGACGAAAAGACGGGAGAGGAGACTTTCCGCCGCATCGTCAAGACTCTCAAACACGAGAGCGCAGAGTCTTTGGACGAGTTCAGAAGAAATCAAAAGAAA","4.70","-15.36","36947","MAKYYATVAGLPNITVEDRKLPFTSLQFLQELRPILSRTDSKLFDLLLWEQENQFLLRYLEDSEKAKAEESRPTLFSYDTLDGIIAAYREKRVMPRMDSLPEHFRTFLSEKLTEMFREEEEGDVGQMSLSDTEAEEGKARLPISDEDRLAMYYYEYAMKCGNDFLEEWFALNLHIKNILAAITCRKLGWNPINYIVGTGEIEDKLRTSRARDFDLGEELPYLSTLFSVGEETDITKRERLLDVIRWEWLEESVFNRVFTVERLLCYYLELAIIERWVKLDEKTGEETFRRIVKTLKHESAESLDEFRRNQKK","1895683 1896618","TIGR ID: PG1802","conserved hypothetical protein","Cytoplasm","This sequence corresponds to gi:34397739 in Genbank.Its nearest neighbor in the NR database is gi:29346710 from Bacteroides thetaiotaomicron VPI-5482.","
noIPR
unintegrated
unintegrated
PD181473\"[153-293]TPD181473


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Mar 8 15:19:17 2005","Tue Mar 8 15:19:17 2005","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 8 15:19:17 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541422","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Tue Mar 8 15:19:17 2005","","1","","","PG1802" "PG1575","1896631","1898382","1752","ATGGCTACAAAAGGAGTTGTTAAGGGGATTGTGTCCAACCTCGTGACCGTGGAGGTCGACGGGCCGGTTTCCCAAAATGAAATTTGCTACATCGATGTCAATGGCACCAAGCTGATGAGCGAGGTGATCAAGGTGATCGGCAAAAATGCTTATGTGCAGGTTTTCGAAAGTACTCGCGGTATGCACGTAGGAGATGAGGCAGAGTTTACCGGCAGTATGCTTGAGGTAACGCTCGGCCCCGGTATGCTTTCGAAGAACTACGACGGTCTGCAACACGACTTGGACAAGATGGACGGGATCTTCCTCAAACGAGGCGATTATACTCCCGCTCTCGATGACGACAAGCTGTGGGACTTCAAGCCTTTGGCCAATGTGAACGACAATGTGATCGCAGGCTCATGGCTCGGAGAGGTGACGGAAAATTTCCAACCGCACAAGATCATGGTACCTTTCGTTTTCGAAGGCAATTACAAGGTGAAGAGTCTGGCCAAAGCCGGTTCGTACAAAGTGAACGATGTGATCGCTGTGGTAACGGATCAGGACGGGAAAGACCACAATGTAACCATGGTGCAGAAATGGCCGGTGAAACGTGCTATCACTTGCTATCGCGAGAAGCCGCGTCCTTTCAAACTGCTCGAAACGGGTATCCGTATCATCGACACTTTCAACCCCATCGTAGAGGGTGGTACGGGATTTATCCCCGGTCCTTTCGGTACGGGAAAGACGGTGCTCCAGCATGCTATCTCGAAGCAGGCGGAAGCCGATATCGTGATCATTGCAGCCTGTGGCGAGCGTGCAAACGAGGTTGTGGAGATCTTTGCGGAATTCCCCCACCTGAATGACCCCCACACGGGACGTAAATTGATGGAACGTACCATTATTATTGCTAATACGTCGAATATGCCTGTGGCTTCGCGTGAGGCATCCGTATATACGGCCATGACGATAGCCGAGTACTATCGCTCCATGGGCCTTCGCGTGCTGATGATGGCAGACTCCACTTCGCGTTGGGCACAGGCTCTGCGTGAGATGTCTAACCGTCTGGAAGAGCTTCCCGGACCGGATGCTTTCCCGATGGACTTGTCAGCTATCGTAGCCAACTTCTACGCTCGTGCAGGATACGTTTACCTGAACAACGGTTCGGCCGGTTCGGTAACGTTCATCGGTACGGTATCTCCCGCCGGTGGTAACCTCAAAGAGCCTGTGACGGAAAACACCAAGAAAGTGGCTCGCTGCTTCTATGCTTTGGAGCAGAATCGTGCCGACCGCAAACGTTATCCGGCTGTAAACCCCATCGATAGTTACTCGAAGTACATCGAATATCCCGAATTCGAGAGCTATATATCGAACCACATCAGTGCAGACTGGACTACTAAGGTGAATGAGCTGAAGATGCGCTTGCATCAGGGTAAAGAAATTGCCGAGCAGATCAACATCCTCGGTGATGATGGTGTACCCGTTAGCTACCACGTAGTCTTCTGGAAAGCAGAATTGATCGACTTTGTGATCCTTCAGCAAGATGCTTTCGACGATGTCGATTGCAACAGCTCGCTCGAGCGTCAGGAGCTGATGCTCAGCAGAATAACGGACATCTGTCGTACGGAATTCGATTTCGAAGACTTCCTCGAGGTTTCGGACTATTTCAAGCGAATGATCAATACCTTCAAGCAGGTGAACTATTCTCAGTTCAAAAGTGCTGAATTTGACAAATACAATAAAGAGTTGGACGCTATTCTGGCCGAACGCATCAAA","5.10","-14.81","65601","MATKGVVKGIVSNLVTVEVDGPVSQNEICYIDVNGTKLMSEVIKVIGKNAYVQVFESTRGMHVGDEAEFTGSMLEVTLGPGMLSKNYDGLQHDLDKMDGIFLKRGDYTPALDDDKLWDFKPLANVNDNVIAGSWLGEVTENFQPHKIMVPFVFEGNYKVKSLAKAGSYKVNDVIAVVTDQDGKDHNVTMVQKWPVKRAITCYREKPRPFKLLETGIRIIDTFNPIVEGGTGFIPGPFGTGKTVLQHAISKQAEADIVIIAACGERANEVVEIFAEFPHLNDPHTGRKLMERTIIIANTSNMPVASREASVYTAMTIAEYYRSMGLRVLMMADSTSRWAQALREMSNRLEELPGPDAFPMDLSAIVANFYARAGYVYLNNGSAGSVTFIGTVSPAGGNLKEPVTENTKKVARCFYALEQNRADRKRYPAVNPIDSYSKYIEYPEFESYISNHISADWTTKVNELKMRLHQGKEIAEQINILGDDGVPVSYHVVFWKAELIDFVILQQDAFDDVDCNSSLERQELMLSRITDICRTEFDFEDFLEVSDYFKRMINTFKQVNYSQFKSAEFDKYNKELDAILAERIK","1896631 1898382","From gi:12585431This protein produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit. Other ATP synthase subunits are immediately up and downstream and include PG1573 (E), PG1576 (B), PG1577 (D), PG1578 (I) and PG1579 (K).TIGR ID: PG1803","ATP synthase subunit A (V-type ATPase subunit A)","Cytoplasm, Inner membrane","This sequence is similar to CT308 and to BT1299.Numerous significant hits in gapped BLAST to V-type ATPase, subunit A (atpA); e.g. residues 1-579 are 47% similar to O51121 of Borrelia burgdorferi, residues 3-579 are 47% similar to AE001220 of Treponema pallidum, residues 26-579 are 47% similar to AE001122 of Borrelia burgdorferi.","
InterPro
IPR000194
Domain
ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding
PF00006\"[214-436]TATP-synt_ab
PS00152\"[427-436]?ATPASE_ALPHA_BETA
InterPro
IPR000793
Domain
ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal
SSF47917\"[450-558]TATPase_a/b_C
InterPro
IPR004100
Domain
ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal
PF02874\"[7-71]TATP-synt_ab_N
SSF50615\"[1-74]TATPase_a/b_N
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[163-438]TG3DSA:3.40.50.300
PTHR15184\"[3-440]TPTHR15184
PTHR15184:SF7\"[3-440]TPTHR15184:SF7
SSF52540\"[163-443]TSSF52540


","BeTs to 8 clades of COG1155COG name: Vacuolar ATPase/archaeal ATP synthase A subunit (NtpA)Functional Class: CThe phylogenetic pattern of COG1155 is amtKY-----------oLin-Number of proteins in this genome belonging to this COG is 1","***** IPB000194 (ATP synthase alpha and beta subunit) with a combined E-value of 5.2e-37. IPB000194A 76-95 IPB000194B 290-333 IPB000194C 337-374 IPB000194D 401-438","Residues 467-579 are 30% similar to a (SUBUNIT A V-TYPE ATPASE ATP SYNTHASE ATPA ATPA-1) protein domain (PD083462) which is seen in O51121_BORBU.Residues 13-437 are 54% similar to a (HYDROLASE HYDROGEN ION TRANSPORT ATP SYNTHASE) protein domain (PD000090) which is seen in O83441_TREPA.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Thu Mar 28 10:32:37 2002","Tue Apr 17 14:27:04 MDT 2001","Thu Dec 4 13:17:34 2003","Thu Mar 28 10:32:37 2002","Fri Mar 16 09:10:36 MST 2001","Fri Mar 16 09:10:36 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 205-406 have 26% similarity to PG1576, ATP synthase beta chain.","Fri Mar 16 09:10:36 MST 2001","Fri Mar 16 09:10:36 MST 2001","-59% similar to PDB:1VDZ Crystal structure of A-type ATPase catalytic subunit A from Pyrococcus horikoshii OT3 (E_value = 2.3E_107);-48% similar to PDB:2OBL Structural and biochemical analysis of a prototypical ATPase from the type III secretion system of pathogenic bacteria (E_value = 1.2E_18);-48% similar to PDB:2OBM Structural and biochemical analysis of a prototypical ATPase from the type III secretion system of pathogenic bacteria (E_value = 1.2E_18);-42% similar to PDB:1SKY CRYSTAL STRUCTURE OF THE NUCLEOTIDE FREE ALPHA3BETA3 SUB-COMPLEX OF F1-ATPASE FROM THE THERMOPHILIC BACILLUS PS3 (E_value = 9.2E_16);-45% similar to PDB:2DPY Crystal structure of the flagellar type III ATPase FliI (E_value = 3.5E_15);","","","Residues 7 to 71 (E-value = 5.7e-08) place PG1575 in the ATP-synt_ab_N family which is described as ATP synthase alpha/beta family, beta-barrel domain (PF02874)Residues 254 to 442 (E-value = 1.1e-69) place PG1575 in the ATP-synt_ab family which is described as ATP synthase alpha/beta family, nucleotide-binding domain (PF00006)","Thu Dec 4 13:17:34 2003","34541423","","","","","","1","","","PG1803" "PG1576","1898397","1899713","1317","ATGTCAAAACAAGCTTTTCAGAAAATATATACGAAGATTACCAATATCACCAAGGCAACCTGCTCTTTGCGTGCCACCGGTGTGGGTAATGAAGAGTTGGCCACTATCGACGGCCGATTGGCTCAGGTGGTGCGTATTCAGGGCGAAGATGTAACCCTGCAGGTATTTGCCGGTACGGAGGGGATTCCCACCGATGCCGAAGTAATCTTCATGGGCAAGGCTCCCTCGCTCAAAGTGGGAGATCAGTTGGCCGGCCGTTTCTTCAACGCTTATGGCGAACCTATCGACGGAGGCCCCCAACCGGAAGGAAAAGAAGTGGAGATCGGCGGTCCGTCCGTTAATCCGGTCCGTCGTAAGCAGCCTTCAGAGCTGATCGCTACCGGTATCGCCGGTATCGACCTGAACAATACTTTGGTGACGGGACAGAAGATTCCTTTCTTCGCCGACCCTGACCAGCCGTTCAACCAGGTAATGGCCATGGTAGCCCTCCGAGCCGAGAGTGATAAGATTATCCTCGGTGGAATGGGTATGACCAATGACGACTACTTGTTCTTTAAGAATACATTTAGCAATGCCGGAGCGCTTGATCGTATCGTGAGCTTTATCAATACGACGGAAGACCCCTCGGTGGAGCGTATCCTCGTGCCGGACATGGCTTTGGCTGCTGCCGAATACTTTGCCGTTGAGAAGCATGAGAAAGTACTGGTACTGCTAACGGACATGACCAACTATGCGGATGCTTTGGCCATCGTATCGAACCGTATGGACCAGATCCCCTCTAAGGACTCTATGCCCGGATCGCTCTATTCGGATTTGGCCAAAATCTACGAAAAGGCTGTACAGTTCCCCGATGGTGGTTCTATCACGATTATCGCTGTGACCACTCTTTCCGGAGGAGACATTACTCACGCCGTGCCGGACAACACCGGTTATATTACCGAAGGTCAGCTCTATCTCCGTCGCGACAGCAACGTAGGTAAGGTTATCGTAGACCCGTTCCGAAGCCTCTCTCGTTTGAAGCAGCTCGTTATCGGTAAGAAGACTCGAGAAGACCATCCTCAGGTGATGAATGCCGCGGTTCGTCTTTTCTCCGATGCGGCCAATGCTCAAACCAAGATGGAGAACGGTTTCGACCTTACGGACTACGACAACCGTGCGCTCGAATTCGCCAATGACTACTCTCGTCAGCTCTTGGCCATAGACGTAAACGTGAATACGACAGAGATGCTCGACACGGCGTGGGAGCTATTCTCCAAGCACTTCAAACCGGCCGAAGTGAATATCAAGCAGCAGCTTGTGGACACTTATTGGAAGAAA","4.80","-12.05","48154","MSKQAFQKIYTKITNITKATCSLRATGVGNEELATIDGRLAQVVRIQGEDVTLQVFAGTEGIPTDAEVIFMGKAPSLKVGDQLAGRFFNAYGEPIDGGPQPEGKEVEIGGPSVNPVRRKQPSELIATGIAGIDLNNTLVTGQKIPFFADPDQPFNQVMAMVALRAESDKIILGGMGMTNDDYLFFKNTFSNAGALDRIVSFINTTEDPSVERILVPDMALAAAEYFAVEKHEKVLVLLTDMTNYADALAIVSNRMDQIPSKDSMPGSLYSDLAKIYEKAVQFPDGGSITIIAVTTLSGGDITHAVPDNTGYITEGQLYLRRDSNVGKVIVDPFRSLSRLKQLVIGKKTREDHPQVMNAAVRLFSDAANAQTKMENGFDLTDYDNRALEFANDYSRQLLAIDVNVNTTEMLDTAWELFSKHFKPAEVNIKQQLVDTYWKK","1898397 1899713","From gi:12585527:The protein produces ATP from ADP in the presence of a proton concentration gradient across the membrane. The V-type beta chain is a regulatory subunit. Other ATP synthase subunits are immediately up and downstream and include PG1573 (E), PG1575 (A), PG1577 (D), PG1578 (I) and PG1579 (K).TIGR ID: PG1804","ATP synthase subunit B (V-type ATPase subunit B)","Cytoplasm, Inner membrane","This sequence is similar to CT307 and to BT1298.Numerous significant hits in gapped BLAST to V-type ATP synthase, subunit B; e.g. residues 8-437 are 47% similar to AE001220 of Treponema pallidum, residues 7-439 are 47% similar to AE001303 of Chlamydia trachomatis, residues 7-439 are 47% similar to AE002227 of Chlamydophila pneumoniae.","
InterPro
IPR000194
Domain
ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding
PF00006\"[127-337]TATP-synt_ab
InterPro
IPR004100
Domain
ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal
PF02874\"[36-72]TATP-synt_ab_N
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[76-339]TG3DSA:3.40.50.300
PTHR15184\"[39-345]TPTHR15184
PTHR15184:SF11\"[39-345]TPTHR15184:SF11
SSF52540\"[76-344]TSSF52540


","BeTs to 8 clades of COG1156COG name: Vacuolar ATPase/archaeal ATP synthase B subunit (NtpB)Functional Class: CThe phylogenetic pattern of COG1156 is amtky-----------oLin-Number of proteins in this genome belonging to this COG is 1","***** IPB000194 (ATP synthase alpha and beta subunit) with a combined E-value of 7.4e-22. IPB000194A 77-96 IPB000194B 196-239 IPB000194C 244-281 IPB000194D 304-341","Residues 339-437 are 43% similar to a (B HYDROLASE HYDROGEN ION) protein domain (PD032612) which is seen in O84309_CHLTR.Residues 43-338 are 53% similar to a (HYDROLASE HYDROGEN ION TRANSPORT ATP SYNTHASE) protein domain (PD000090) which is seen in O83442_TREPA.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Thu Mar 28 10:34:56 2002","Fri Mar 23 16:56:25 MST 2001","Thu Dec 4 13:16:07 2003","Thu Mar 28 10:34:56 2002","Fri Mar 23 16:42:05 MST 2001","Fri Mar 23 16:42:05 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 118-309 show 26% similarity to PG1575, ATP syntase alpha subunit.","Fri Mar 23 16:42:05 MST 2001","Fri Mar 23 16:42:05 MST 2001","-55% similar to PDB:2C61 CRYSTAL STRUCTURE OF THE NON-CATALYTIC B SUBUNIT OF A-TYPE ATPASE FROM M. MAZEI GO1 (E_value = 1.2E_65);-44% similar to PDB:1SKY CRYSTAL STRUCTURE OF THE NUCLEOTIDE FREE ALPHA3BETA3 SUB-COMPLEX OF F1-ATPASE FROM THE THERMOPHILIC BACILLUS PS3 (E_value = 2.6E_20);-42% similar to PDB:1FX0 Crystal structure of the chloroplast F1-ATPase from spinach (E_value = 2.0E_17);-42% similar to PDB:1KMH Crystal Structure of spinach chloroplast F1-ATPase complexed with tentoxin (E_value = 2.0E_17);-43% similar to PDB:2DPY Crystal structure of the flagellar type III ATPase FliI (E_value = 8.5E_16);","","","Residues 167 to 343 (E-value = 9.1e-40) place PG1576 in the ATP-synt_ab family which is described as ATP synthase alpha/beta family, nucleotide-binding domain (PF00006)","Fri Mar 23 16:42:05 MST 2001","34541424","","","","","","1","","","PG1804" "PG1577","1899732","1900343","612","ATGGCTATTAAGTTTCAATACAACAAAACCTCACTTCAGCAGCAAGAAAAGCAGCTTAAGATGCGAGAGCGTACCTTACCGACGATCAAAAGCAAGGAGAGCGCATTGCGTCTGGAGGTGAAGCGAACGAAGGACGAGGTGGAGCGATTGGAACGCCAACTGGAAGAAGAGATCGTAGGCTACCGAAGCATGGTAAGCCTGTGGAACGAATTCAAACCCGACCTGATCAGTGTGGAGGGTGTCAAGCTCTCGGCAAAGAAGGTGGCAGGCGTAGTCGTTCCCGTACTCGATGACATTTCTTACACGATCAAGCCTTTCAGTTTGTTCAATGCCCCGTCATGGTTTGCCGAAGGCATTGACCTGCTGAAGAACTTGGCCCATACCGGAATCGAGGCCGAGTTCCTCGGTCTGAAGTTGGAGTTCCTCGAATATGCACGCAAGAAGACTACACAGAAAGTGAATCTTTTTGAGAAAGTGCAAATCCCCGGCTACAAAGACGCCATACGCAAGATCAAACGCTATCTGGAGGATGAAGAGAGTTTGTCCAAATCCTCTCAGAAGATTATGCGAGCCAATATGGAGAAACGTAACAAAGGAGAGGAGGTGATGGCA","10.20","7.26","23675","MAIKFQYNKTSLQQQEKQLKMRERTLPTIKSKESALRLEVKRTKDEVERLERQLEEEIVGYRSMVSLWNEFKPDLISVEGVKLSAKKVAGVVVPVLDDISYTIKPFSLFNAPSWFAEGIDLLKNLAHTGIEAEFLGLKLEFLEYARKKTTQKVNLFEKVQIPGYKDAIRKIKRYLEDEESLSKSSQKIMRANMEKRNKGEEVMA","1899732 1900343","Other ATP synthase subunits are immediately up and downstream and include PG1573 (E), PG1575 (A), PG1576 (B), PG1578 (I) and PG1579 (K).TIGR ID: PG1805","H+-transporting ATP synthase subunit D","Cytoplasm","Residues 4-198 have 30% simialrity to AE001220, T. pallidum V-type ATPase, subunit D (atpD-1).Residues 1-201 have 22% similarity to AE001594, C. pneumoniae ATP Synthase Subunit D.","
InterPro
IPR002699
Family
ATPase, V1/A1 complex, subunit D
PF01813\"[77-179]TATP-synt_D
TIGR00309\"[2-196]TV_ATPase_subD


","BeTs to 6 clades of COG1394COG name: Archaeal/vacuolar type H+-ATPase subunit DFunctional Class: CThe phylogenetic pattern of COG1394 is amtky-----------oLin-Number of proteins in this genome belonging to this COG is 1","***** PF01813 (ATP synthase subunit D) with a combined E-value of 6.9e-12. PF01813A 5-56 PF01813B 132-186","Residues 4-193 are 30% similar to a (SUBUNIT D ATP SYNTHASE) protein domain (PD004122) which is seen in O51119_BORBU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Thu Mar 28 10:35:41 2002","Fri Mar 23 17:04:10 MST 2001","Fri Mar 2 11:25:55 MST 2001","Thu Mar 28 10:35:41 2002","Fri Mar 2 11:25:55 MST 2001","Fri Mar 2 11:25:55 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Mar 2 11:25:55 MST 2001","-46% similar to PDB:1A9X CARBAMOYL PHOSPHATE SYNTHETASE: CAUGHT IN THE ACT OF GLUTAMINE HYDROLYSIS (E_value = );-46% similar to PDB:1BXR STRUCTURE OF CARBAMOYL PHOSPHATE SYNTHETASE COMPLEXED WITH THE ATP ANALOG AMPPNP (E_value = );-46% similar to PDB:1C30 CRYSTAL STRUCTURE OF CARBAMOYL PHOSPHATE SYNTHETASE: SMALL SUBUNIT MUTATION C269S (E_value = );-46% similar to PDB:1C3O CRYSTAL STRUCTURE OF THE CARBAMOYL PHOSPHATE SYNTHETASE: SMALL SUBUNIT MUTANT C269S WITH BOUND GLUTAMINE (E_value = );-46% similar to PDB:1CE8 CARBAMOYL PHOSPHATE SYNTHETASE FROM ESCHERICHIS COLI WITH COMPLEXED WITH THE ALLOSTERIC LIGAND IMP (E_value = );","","","Residues 10 to 191 (E-value = 7e-07) place PG1577 in the ATP-synt_D family which is described as ATP synthase subunit D (PF01813)","Fri Mar 23 17:04:10 MST 2001","34541425","","","","","","1","","","PG1805" "PG1578","1900343","1902154","1812","ATGATTACCGCAATGAACAAATACCTTTTCCTGATCTATCACCGTGAGTACGAAGCTTTCTTGGAAAAGTTGCGTACGATCGGGGTGGTACACATCCGGGAAACCAAGGCTACGAAAGATGTGGCGGAATTGCAAGATCTCCTCAATTTGCGTAAAGAGATTGCCCAGACCAAGCGCATGCTCGCTTCGTACAAAAGCGAGGATGCTCCCGCCGAACAGACCCTGACACTTGCGTCCGAAGCTGACGGAGAAGCTGCCATGCAGGATGCTCAGGCTCTTTTCGCCGAAGAGACCCGTCTTAAAGGCGCGATCCTGTCTAAAAAGCGGGAGGTGGAGCACATGGAAGTTTGGGGGCAGTTCGACTTTGCATCCATCGAAAGACTCCGGAAAGCCGGCTATGAAGTGAATTTCTATTCGTCTTCCTCTTCGGCTTACAAACCTGAGTGGGAAGAAAAGTTCGGAGCAGTGGCTATCAATACCGTACGCTCCACTGTTCATTTCGTCACCATAGGGCATAAACAGGATGCCAGACCCGATGCCGAGCGAATCAAACTACCCGATTACGATCTGGCTACGCTCCGTCACCAACAGGAAGAGCTGGAAGCTCTATTGGAAGCGAATGCGAAGGACAAAACTTCATTTGCCGACAATCGTATGGCTGAACTCACGGCCTATGACAACCTCCTGTCGGACAAATTCGCATTCACCAGTGCCATGGTACAAGCCGAAGGACAAGCCGATGACAAACTGATGCTTCTCGAAGGCTGGGTACCCGTGTCAGAAGCTTCGACTATGGAGCAGGCATTGGCCGGAGAAGGCTACTATGTAGAGCAGATGCAGATAGAAGAAGGGGACAAGGTGCCGATCAAGCTGAAGAACAATTTCTTCGCGCGGCTCTTCGAACCTATTACGAAGATGTATTCTTTGCCTAACTACGGAGAGCTGGATCCCACGCCATTCCTGGCACCCTTCTTCATGCTCTTCTTTGGGCTTTGCTTCGGAGATGGAGGCTACGGCTTGCTTATTTTGCTTGCTTCTACCCTGTTCAAAGGGAAAGCCGGTAAGGAACTGAAACCGATACTCACTCTTTTCCAATGGCTGGGTGGAGCTACCACGATAATCGGTCTGCTCACCGGTTCGTTCTTCGGTATAGCATTGGCTGAAGTACCCCAGTTGGCAAGTGTCAAGAAATACTTCCTGAATCAGGACAATCTGATGACCTTGTCCGTTGTTATCGGTCTGATACAGATCATTTATGCCAAGATTTTGGCCGGTATCAAGATCAAAATCCAGCGAGGAGTGAAGTATAGCCTGGCCACATTTGCGTGGGCAGTCATTATCACGGCAGTGATATTGGCATTCGCTTTACCCATGATAGCACCGAAGGTACCGGAAGTGGTGATCAATGTCATGTTCGGCATTGCAGTTGCCGGAGGTTTGGTAGCCTTCTTCTACAATTCACCTGGCAAGAATCCGTTTATCAATTTCGGTAGCGGCTTGTGGACGGCTTATAACACAGCATCAGGACTTTTGGGCGATACGCTTTCGTATATCCGACTGTTTGCGATCGGACTCACGGGCTCTATCCTCGGTGGCGTATTCAATACGTTGGCTACGGATATGACTGCTTCTATGAGTATTGTACCTCGGATCATCGTGATGCTGATCATTTTGCTGATCGGTCATGGTCTGAACTTCGGTCTTACGATGATCAGTTCGCTTGTTCACCCCATTCGTTTGACATTCGTAGAGTTCTATAAGAACAGCGAATTTGAGGGAGGGGGCAACCAGTACACACCGTTCAAACGCTCC","6.00","-5.07","66912","MITAMNKYLFLIYHREYEAFLEKLRTIGVVHIRETKATKDVAELQDLLNLRKEIAQTKRMLASYKSEDAPAEQTLTLASEADGEAAMQDAQALFAEETRLKGAILSKKREVEHMEVWGQFDFASIERLRKAGYEVNFYSSSSSAYKPEWEEKFGAVAINTVRSTVHFVTIGHKQDARPDAERIKLPDYDLATLRHQQEELEALLEANAKDKTSFADNRMAELTAYDNLLSDKFAFTSAMVQAEGQADDKLMLLEGWVPVSEASTMEQALAGEGYYVEQMQIEEGDKVPIKLKNNFFARLFEPITKMYSLPNYGELDPTPFLAPFFMLFFGLCFGDGGYGLLILLASTLFKGKAGKELKPILTLFQWLGGATTIIGLLTGSFFGIALAEVPQLASVKKYFLNQDNLMTLSVVIGLIQIIYAKILAGIKIKIQRGVKYSLATFAWAVIITAVILAFALPMIAPKVPEVVINVMFGIAVAGGLVAFFYNSPGKNPFINFGSGLWTAYNTASGLLGDTLSYIRLFAIGLTGSILGGVFNTLATDMTASMSIVPRIIVMLIILLIGHGLNFGLTMISSLVHPIRLTFVEFYKNSEFEGGGNQYTPFKRS","1900343 1902154","Other ATP synthase subunits are immediately up and downstream and include PG1573 (E), PG1575 (A), PG1576 (B), PG1577 (D) and PG1579 (K).TIGR ID: PG1806","vacuolar ATPase subunit I","Inner membrane, Cytoplasm","This sequence is similar to CT305 and to BT1296.Numerous significant hits in gapped BLAST to V-type ATPase, subunit I; e.g. residues 1-603 are 26% similar to AE001122 of Borrelia burgdorferi, residues 5-603 are 23% similar to AE001303 of Chlamydia trachomatis, residues 1-602 are 22% similar to AE001220 of Treponema pallidum. The C-terminal half of the protein also had many significant hits to v-type Na-ATPase (NtpM protein); residues 250-602 are 31% similar to X76913 of Enterococcus hirae, residues 250-602 are 31% similar to AE006484 of Streptococcus pyogenes.","
InterPro
IPR002490
Family
ATPase, V0/A0 complex, 116-kDa subunit
PTHR11629\"[118-222]T\"[255-603]TATPase_V0/A0_116
PF01496\"[21-604]TV_ATPase_I
noIPR
unintegrated
unintegrated
PTHR11629:SF27\"[118-222]T\"[255-603]TPTHR11629:SF27


","BeTs to 8 clades of COG1269COG name: Archaeal/vacuolar-type H+-ATPase subunit IFunctional Class: CThe phylogenetic pattern of COG1269 is amtkY-----------oLin-Number of proteins in this genome belonging to this COG is 1","***** PF01496 (V-type ATPase 116kDa subunit family) with a combined E-value of 1.4e-17. PF01496C 247-258 PF01496D 283-313 PF01496E 319-342 PF01496H 564-602","Residues 250-602 are 30% similar to a (SUBUNIT VACUOLAR HYDROGEN ION TRANSPORT TRANSMEMBRANE) protein domain (PD001977) which is seen in NTPI_ENTHR.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Thu Mar 28 10:37:00 2002","Thu Jun 7 13:40:34 MDT 2001","Thu Dec 4 13:14:25 2003","Thu Mar 28 10:37:00 2002","Thu Jun 7 13:40:34 MDT 2001","Thu Jun 7 13:40:34 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Jun 7 13:40:34 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 21 to 604 (E-value = 8e-15) place PG1578 in the V_ATPase_I family which is described as V-type ATPase 116kDa subunit family (PF01496)","Fri Jun 8 16:29:47 MDT 2001","34541426","","","","","","1","","","PG1806" "PG1579","1902212","1902685","474","ATGGAACAAATGTTAGCTTATCTCGGTATTGCATTGATGGTTGCATTGACCGGTATCGGAAGTGCCATTGGCGTAACGATCTGCGGTAACACTACCGTTGGCGCAATGAAGAAGAACCCCGATTCACTGGGTCTCTACATCGGTCTTAGTGCTCTTCCGAGTTCACAGGGACTCTATGGTTTCGTGGGCTTCTTTATGGCATCCGGCTTGATCACCAAATTGGTTGCTGCCAATGCTCTTACTCTGCTTGCAGGTTGGGCTATTTTCTTCGCCGGTTTGGCACTGGGTGTAGTAGGTCTGATGTCTGCCATCCGCCAAGCACAGGTATGCGCTAATGGTATTCAGGCTATCGGCGGTGGTCACAACGTGTTCGGTGCTACCATGGTGATGGCTGTTTTCCCCGAGCTTTATGCTATCTTGGCTCTTCTCGTGTCCATCCTGATCTTCGGTAGCGTACCCGGAATGGTTGGAGCT","8.10","1.12","15901","MEQMLAYLGIALMVALTGIGSAIGVTICGNTTVGAMKKNPDSLGLYIGLSALPSSQGLYGFVGFFMASGLITKLVAANALTLLAGWAIFFAGLALGVVGLMSAIRQAQVCANGIQAIGGGHNVFGATMVMAVFPELYAILALLVSILIFGSVPGMVGA","1902212 1902685","Other ATP synthase subunits are immediately upstream and include PG1573 (E), PG1575 (A), PG1576 (B), PG1577 (D) and PG1578 (I).TIGR ID: PG1807","probable H+-transporting ATP synthase subunit K","Inner membrane, Extracellular","Residues 4-152 have 32% similarity to U67478, M. jannaschii H+-transporting ATP synthase, subunit K (atpK).","
InterPro
IPR002379
Family
ATPase, F0/V0 complex, subunit C
PF00137\"[5-62]TATP-synt_C
SSF81333\"[1-72]T\"[79-153]TATPase_F0/V0_c


","BeTs to 10 clades of COG0636COG name: FoF1-type ATP synthase c subunit/Vacuolar ATPase/archaeal ATP synthase K subunitFunctional Class: CThe phylogenetic pattern of COG0636 is AmtkYqvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 5-147 are 30% similar to a (SUBUNIT K V-TYPE ATPASE ATP SYNTHASE PUTATIVE ATPK-1) protein domain (PD087488) which is seen in Q9Z989_BBBBB.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Thu Mar 28 10:38:57 2002","Fri Jun 15 11:27:32 MDT 2001","Fri Mar 2 11:33:52 MST 2001","Thu Mar 28 10:38:16 2002","","Fri Mar 2 11:33:52 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Mar 2 11:33:52 MST 2001","-46% similar to PDB:2BL2 THE MEMBRANE ROTOR OF THE V-TYPE ATPASE FROM ENTEROCOCCUS HIRAE (E_value = 7.3E_13);-46% similar to PDB:2CYD Crystal structure of Lithium bound rotor ring of the V-ATPase from Enterococcus hirae (E_value = 7.3E_13);-46% similar to PDB:2DB4 Crystal structure of rotor ring with DCCD of the V- ATPase from Enterococcus hirae (E_value = 1.6E_12);","","","No significant hits to the Pfam 11.0 database","Fri Jun 15 11:27:32 MDT 2001","34541427","","","","","","1","","","PG1807" "PG1580","1905336","1903051","2286","ATGGAGCAAGACGCGAGTGCAAAGAATCCCGATATAGAGACAGAAAATAAGGGGGCGATCAGCGAAGAGGAAGCTTTGATTCAGAGGGAATACTCTTTGTTGATTCAAGACTATTTGAATTCCAACCATCGTCGCAAAGTGGAAAAGATCGACAAGGCTTTCCACTTGGCCAAGGATGCTCATGCCGGTGCCAAGCGACGTAGCGGTGAGCCGTATATTCTCCATCCTATTGCCGTGGCACGGATTGTGTGCCAGGAAATAGGCTTGGGATCTACGTCCATCTGTTGTGCTCTGCTGCACGATGTGGTGGAGGATACGGAGTACACCGTGGAAGATATGCGCGATATGTTCGGCGACAAGGTCGCTCAGATCGTGGACGGGCTGACCAAAATATCCGGCGAGGTATTCAGCAATAGTTCCGCCCAAGCCGAAAATTTCCGCAAGCTTATCCTGACGATGAATGATGACATCCGCGTTATCCTCATCAAGATTGCCGATCGCTTGCATAATATGCGCACACTGGACTCCATGCTTCCGGCCAAGCAAATGAAGATAGCAGGTGAGACACAGTATGTCTATGCTCCCTTGGCACATCGTTTGGGTCTCTTCGCCATCAAGAGCGAGTTGGAAGATTTGAGCTTCAAATACGAGCATCCACAGGAATATGAAGCCATCAAGGAGAAAATCCGCATCACCGAGCAGCATCGTTTAGAGATGTTCGAGCATTTTGCGGCACCGCTCAAACAACGGTTTGCCGGTATGGACATGTCCTATGAGATGAAGGCGAGGGTCAAATCCGTCTATTCCATTTGGAAGAAAATGGAAAAGAAAGGAGTTCCTTTCGAAGAGATTTACGACCTTTTTGCGGTACGAATCATATTCGAATCTTCACCCACCATCCCCGACAAAAACCGCTGCTGGGAGATCTATTCGGCCATCACGGATATATATCGCAATCGTCCCGACCGTATTCGCGACTGGGTCAGCAATCCTAAAAGCAACGGATACCAAGCACTCCACCTGACGGTCATGGGACCGGATGGCGAGTGGGTAGAAGTCCAAATCCGTAGCCGAAGGATGGACGACATAGCAGAGAAAGGATTTGCTGCCCACTGGAAATACAAGGGAGACAACGTGGAGGAAGATTCGGAGCTGGAGAAATGGCTCAGTACCATACAGGAGATACTGGAAAATCCGAATCCGAATGCTCTTGATTTTCTCGATACGATCAAACTGAATCTATTCTCCAATGAGGTAATGGTGTTCACGCCAAAAGGCGAAATTAAACGTTTGCCTCAGGGAGCTACGGCTTTGGACTTTGCTTATTCGCTTCACTCTGATTTGGGAGACCATTGCATCGGGGCCAAAGTGAATCACAAACTCGTTCCGCTCAGTTATGTGCTCAACAGCGGTGATCAGGTGGAGGTACTTTCGAGCAAAAGCCAGCAACCGACCGAAGAGTGGTTGCGCTATGTGACTACGGCACGAGCCAAATCGAAAGTAGATACTTTTCTCCGACGCAAAAGACGGGAGCTGATCAATCGTGGGGAAGAACGAGTGGTCAGTGTTATACGGACATCCGAATCCATGGTCTCTGCCGAGCTTTTGGATAGGATCGCAGCCTATTTCGGTTTCCTCAATCGCGAAACATTCTTCTACGCCGTCGGTACGGGTACGGTATCTCTGCCCGAAAGCTTCAAAAAACTGCTTCAGGGAGAACATAGCGGTAACTTTCTGATGAGGGCTATCCGTTCGGCATTGAAAGCGGGCAAAAGCAACAAAACCTCCTCTCCATCCGGTAAGCCCGCAGAGAAAGAGGATAAGAAAGCTTACAACACCAAAAAGACTTATATCCTACAAGAGGACGAATTCTCCCGTAACTATCAGATTGCCGAATGCTGCAAACCGATTCCGGGCGACGATGCTTTCGGATTTATCAACGACGATAATACTGTGGTCGTACACAAGCGATCTTGCCCCATTGCCATGCGTTTGAAAAGCAGCTTTGGCAACCGCATCCTCTCTACCGAATGGAGCTTGCACAGTCGTACCTCGTTCGAAGCTAAGCTCGCACTCAAGGGCATTGACTCCACCGGTATCCTCACCGCTGTGACACAGGTTATTTCGGAAGATTTCAATGTCGGCATCAAGCACATACAGCTTACGGCCAAAGATGGCATTTTCGAGGGACAAATCCATCTGCTTGTGCACAGCTCCGACGACCTCCTGAAGATCTGTCATCAGCTTCGTCAGAATAAATACATCCAGTCTGTCGGACGCATATCA","7.20","1.96","86736","MEQDASAKNPDIETENKGAISEEEALIQREYSLLIQDYLNSNHRRKVEKIDKAFHLAKDAHAGAKRRSGEPYILHPIAVARIVCQEIGLGSTSICCALLHDVVEDTEYTVEDMRDMFGDKVAQIVDGLTKISGEVFSNSSAQAENFRKLILTMNDDIRVILIKIADRLHNMRTLDSMLPAKQMKIAGETQYVYAPLAHRLGLFAIKSELEDLSFKYEHPQEYEAIKEKIRITEQHRLEMFEHFAAPLKQRFAGMDMSYEMKARVKSVYSIWKKMEKKGVPFEEIYDLFAVRIIFESSPTIPDKNRCWEIYSAITDIYRNRPDRIRDWVSNPKSNGYQALHLTVMGPDGEWVEVQIRSRRMDDIAEKGFAAHWKYKGDNVEEDSELEKWLSTIQEILENPNPNALDFLDTIKLNLFSNEVMVFTPKGEIKRLPQGATALDFAYSLHSDLGDHCIGAKVNHKLVPLSYVLNSGDQVEVLSSKSQQPTEEWLRYVTTARAKSKVDTFLRRKRRELINRGEERVVSVIRTSESMVSAELLDRIAAYFGFLNRETFFYAVGTGTVSLPESFKKLLQGEHSGNFLMRAIRSALKAGKSNKTSSPSGKPAEKEDKKAYNTKKTYILQEDEFSRNYQIAECCKPIPGDDAFGFINDDNTVVVHKRSCPIAMRLKSSFGNRILSTEWSLHSRTSFEAKLALKGIDSTGILTAVTQVISEDFNVGIKHIQLTAKDGIFEGQIHLLVHSSDDLLKICHQLRQNKYIQSVGRIS","1905336 1903051","TIGR ID: PG1808","GTP pyrophosphokinase, (p)ppGpp synthetase","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 50-761 are 37% similar to gb|AAG17607.1|AF242653_1 ppGpp synthetase/hydrolase Rel of Bacillus stearothermophilus, residues 38-761 are 36% similar to dbj|BAB04961.1| GTP pyrophosphokinase (stringent response) of Bacillus halodurans, residues 50-710 are 37% similar to gb|AAB97677.1| (p)ppGpp synthetase of Myxococcus xanthus.This sequence is similar to BT3998.","
InterPro
IPR003607
Domain
Metal-dependent phosphohydrolase, HD region
SM00471\"[68-180]THDc
InterPro
IPR004095
Domain
TGS
PF02824\"[419-478]TTGS
InterPro
IPR004811
Family
RelA/SpoT protein
TIGR00691\"[53-760]TspoT_relA
InterPro
IPR006674
Domain
Metal-dependent phosphohydrolase, HD region, subdomain
PF01966\"[72-171]THD
InterPro
IPR007685
Domain
RelA/SpoT
PF04607\"[262-378]TRelA_SpoT
InterPro
IPR012675
Domain
Beta-grasp fold, ferredoxin-type
G3DSA:3.10.20.30\"[418-481]TFerredoxin_fold
InterPro
IPR012676
Domain
TGS-like
SSF81271\"[419-479]TTGS-like
noIPR
unintegrated
unintegrated
PTHR21262\"[143-762]TPTHR21262
SSF109604\"[27-218]TSSF109604
SSF55021\"[682-761]TSSF55021
SSF81301\"[219-398]TSSF81301


","BeTs to 9 clades of COG0317COG name: Guanosine polyphosphate pyrophosphohydrolases/synthetasesFunctional Class: T,KThe phylogenetic pattern of COG0317 is -----qvcEbrHujgpo----Number of proteins in this genome belonging to this COG is 2","***** BP02902 (PPGPP HYDROLASE PROTEIN GTP PYROPHOSPH) with a combined E-value of 2.2e-54. BP02902A 186-222 BP02902C 316-357 BP02902D 418-457 BP02902B 266-309***** BP02764 (PPGPP HYDROLASE PROTEIN GTP PYROPHOSPH) with a combined E-value of 4e-12. BP02764 348-376","Residues 211-375 are 40% similar to a (HYDROLASE SYNTHETASE PROTEIN PPGPP) protein domain (PD002902) which is seen in RELA_ECOLI.Residues 56-197 are 55% similar to a (HYDROLASE PROTEIN SYNTHETASE GTP PYROPHOSPHOKINASE PPGPP) protein domain (PD002764) which is seen in SPOT_HAEIN.Residues 414-511 are 53% similar to a (HYDROLASE SYNTHETASE GTP) protein domain (PD002918) which is seen in O52177_MYXXA.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Mar 15 14:57:14 MST 2001","Mon Jan 5 09:36:37 2004","Fri Mar 2 11:54:39 MST 2001","Fri Mar 2 11:54:39 MST 2001","Fri Mar 2 11:54:39 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 21-760 are 34% similar to PG1440, a predicted GTP pyrophosphokinase, (p)ppGpp synthetase.","Wed Mar 21 08:59:52 MST 2001","Fri Mar 2 11:54:39 MST 2001","-59% similar to PDB:1VJ7 Crystal structure of the bifunctional catalytic fragment of RelSeq, the RelA/SpoT homolog from Streptococcus equisimilis. (E_value = 1.4E_72);","","","Residues 72 to 171 (E-value = 4.4e-08) place PG1580 in the HD family which is described as HD domain (PF01966)Residues 262 to 378 (E-value = 2.6e-49) place PG1580 in the RelA_SpoT family which is described as Region found in RelA / SpoT proteins (PF04607)Residues 415 to 478 (E-value = 1.5e-28) place PG1580 in the TGS family which is described as TGS domain (PF02824)","Mon Jan 5 09:36:37 2004","34541428","","Sen K, Hayashi J, Kuramitsu HK.Characterization of the relA gene of Porphyromonas gingivalis.J Bacteriol. 2000 Jun;182(11):3302-4.PMID: 10809717","Wendrich,T.M., Beckering,C.L. and Marahiel,M.A. 2000. Characterization of the relA/spoT gene from Bacillus stearothermophilus. FEMS Microbiol. Lett. 190 (2): 195-201. PubMed: 11034279.","Mon Jan 5 09:36:37 2004","Wed Mar 21 09:15:46 MST 2001","1","","","PG1808" "PG1581","1906129","1905587","543","ATGACTTACGAAATTGTAATTGCTGGTTTCGGAGGACAAGGCGTCCTCTCAATGGGTAAGATCCTTGCTTACTCCGGTTTGATGGAAGACAAAGAGGTGTCTTGGATGCCTTCATACGGACCCGAACAGCGTGGGGGCACATCGAATGTGACGGTGATCGTGAGCGACGAACAGGTAAGTTCGCCGGTTCTCAATGAATACGACATTGTGATCGTACTGAACCAGCCTTCGCTCGATAAGTTCGAAGCGCGCGTTAAGAAAGGCGGCATCTTGGTTTACGATCCGGACAGCATCGTACTCAAGAATAAGCGCGACGATATTCAGATCTACGAAGTGGATGCTACACAAGAGTCGCTCCGCATGGGTAATCAAAAGGCATTCAACATGATTGTCCTCGGTGGTGTTCTCAAGGTTGCTCCGATGGTTAAGATCGAAAGTGTGATCAAGGGTCTGAAGAAGACACTGCCCGAACGTCACCACAAACTCATCCCGATGAACGAGCAAGCCATCCAGCGTGGTATGGAGATCATCAAACAGATACAC","6.80","-0.28","20099","MTYEIVIAGFGGQGVLSMGKILAYSGLMEDKEVSWMPSYGPEQRGGTSNVTVIVSDEQVSSPVLNEYDIVIVLNQPSLDKFEARVKKGGILVYDPDSIVLKNKRDDIQIYEVDATQESLRMGNQKAFNMIVLGGVLKVAPMVKIESVIKGLKKTLPERHHKLIPMNEQAIQRGMEIIKQIH","1906129 1905587","Veith et al. (2002) identified this protein by two-dimensional gel electrophoresis and peptide mass fingerprinting of outer membranes prepared from strain W50. Alpha and beta subunits are immediately upstream at PG1582 and PG1583.TIGR ID: PG1809","ketoisovalerate/2-oxoisoverate-ferredoxin oxidoreductase gamma subunit","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 5-175 are 38% similar to gb|AAB85210.1| 2-oxoisovalerate oxidoreductase, alpha subunit of Methanothermobacter thermautotrophicus, residues 1-180 are 31% similar to gb|AAB98530.1| 2-ketoglutarate ferredoxin oxidoreductase, subunit gamma of Methanococcus jannaschii, residues 4-176 are 32% similar to emb|CAB49431.1| 2-ketoglutarate ferredoxin oxidoreductase, subunit gamma of Pyrococcus abyssi.","
InterPro
IPR002869
Domain
Pyruvate ferredoxin/flavodoxin oxidoreductase
PF01558\"[11-175]TPOR
noIPR
unintegrated
unintegrated
G3DSA:3.40.920.10\"[2-180]TG3DSA:3.40.920.10
SSF53323\"[1-180]TSSF53323


","BeTs to 7 clades of COG1014COG name: Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunitFunctional Class: CThe phylogenetic pattern of COG1014 is AMTK-QVce-r-UJ---l---Number of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","Residues 5-175 are 39% similar to a (OXIDOREDUCTASE PYRUVATE SUBUNIT GAMMA) protein domain (PD001746) which is seen in O26801_METTH.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Thu Mar 28 10:46:51 2002","Wed May 16 16:27:36 MDT 2001","Thu Mar 22 09:31:03 MST 2001","Thu Feb 7 17:49:03 2002","","Mon Mar 5 13:26:48 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1-175 are 20% similar to PG0606, a predicted indolepyruvate ferredoxin oxidoreductase, beta subunit.","Thu Mar 22 09:31:03 MST 2001","Mon Mar 5 13:26:48 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 11 to 175 (E-value = 2.9e-34) place PG1581 in the POR family which is described as Pyruvate ferredoxin/flavodoxin oxidoreductase (PF01558)","Wed May 16 15:41:24 MDT 2001","34541429","","Veith,P., Talbo,G., Slakeski,N., Dashper,S., Moore,C.,Paolini,R., Reynolds,E., Major outer membrane proteins and proteolytic processing of RgpA, and Kgp of Porphyromonas gingivalis W50, Biochem J. 2002 (in press).","","Thu Feb 7 17:49:03 2002","","1","","","PG1809" "PG1582","1906850","1906161","690","ATGCACTATTGTCCGGGTTGTAGCCACGGAGTTGTGCACAAACTCATCGCAGAAGTAATCGAAGAAATGGGCTTGACGGAAGAAACTATCGGCATCGCCCCCGTAGGATGCTCAGTATTCGCCTATCGCTACATCGATATCGACTGGCAAGAAGCTGCCCACGGCCGTGCACCGGCTCTGGCTACAGCAGTAAAGCGTCTGAATCCCTCTAAGCTGGTATTTACATATCAGGGCGACGGAGACTTGGCTGCTATCGGAACAGCCGAGACCATCCACGCAGCCAACCGAGGAGAAAACATCGCCATTATATTCATCAACAACGGTATCTACGGTATGACCGGAGGTCAGATGGCTCCGACTACCCTTGAAGGTATGGTTACGGCTACTTGCCCTCAGGGAAGAAACGTAGAGCTGAACGGTTATCCGCTGAAGATTGCCGATATGCTTGCTTTGCTCGACGGTACTTGTCTCGTAACGCGCCAGACCGTGCACAATGCAGCAGCTGTTCGCAAGACGAAGAAGATGATACAAAAGGCATTCGAAAACTCTATGAACAGAAAGGGTACTTCTATTGTCGAAGTTGTTTCTACATGCAACACCGGCTGGAAGATGAGCCCTGCAGCATCCAATGATTGGATGATGGAGAACATGGCTAAACAGTATCCTTTGGGAGATCTTAAGAATATCGAC","6.80","-0.84","24851","MHYCPGCSHGVVHKLIAEVIEEMGLTEETIGIAPVGCSVFAYRYIDIDWQEAAHGRAPALATAVKRLNPSKLVFTYQGDGDLAAIGTAETIHAANRGENIAIIFINNGIYGMTGGQMAPTTLEGMVTATCPQGRNVELNGYPLKIADMLALLDGTCLVTRQTVHNAAAVRKTKKMIQKAFENSMNRKGTSIVEVVSTCNTGWKMSPAASNDWMMENMAKQYPLGDLKNID","1906922 1906161","Alpha and gamma subunits are immediately up and downstream at PG1581 and PG1583.TIGR ID: PG1810","ketoisovalerate/2-oxoacid-ferredoxin oxidoreductase beta subunit","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 2-228 are 45% similar to gb|AAB85210.1| 2-oxoisovalerate oxidoreductase, alpha subunit of Methanothermobacter thermautotrophicus, residues 4-229 are 37% similar to pir||A71047 probable ferredoxin oxidoreductase beta subunit of Pyrococcus horikoshii, residues 3-220 are 36% similar to gb|AAB90769.1| 2-ketoglutarate ferredoxin oxidoreductase, subunit beta of Archaeoglobus fulgidus.This sequence corresponds to BT0330.","
InterPro
IPR011766
Domain
Thiamine pyrophosphate enzyme, C-terminal TPP-binding
PF02775\"[34-194]TTPP_enzyme_C
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.970\"[3-213]TG3DSA:3.40.50.970
SSF52518\"[2-213]TSSF52518


","BeTs to 11 clades of COG1013COG name: Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunitFunctional Class: CThe phylogenetic pattern of COG1013 is AMTKyQVce-r-UJ---l---Number of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","Residues 122-228 are 29% similar to a (2-OXOISOVALERATE OXIDOREDUCTASE, ALPHA) protein domain (PD119377) which is seen in O26801_METTH.Residues 4-121 are 58% similar to a (OXIDOREDUCTASE PYRUVATE SUBUNIT IRON-SULFUR BETA) protein domain (PD119378) which is seen in O26801_METTH.Residues 3-120 are 31% similar to a (FERREDOXIN OXIDOREDUCTASE-LIKE BETA) protein domain (PD207984) which is seen in O33849_THETH.Residues 20-117 are 41% similar to a (THIAMINE FLAVOPROTEIN PYROPHOSPHATE LYASE SYNTHASE) protein domain (PD000397) which is seen in O59340_PYRHO.","","Thu Jun 14 12:16:16 MDT 2001","","Thu Jun 14 12:16:16 MDT 2001","Thu Jun 14 12:16:16 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:16:16 MDT 2001","Thu Jun 14 12:16:16 MDT 2001","","Thu Mar 28 10:48:07 2002","Wed May 16 16:20:02 MDT 2001","Tue Dec 2 16:09:16 2003","Thu Mar 28 10:48:07 2002","","Tue Jun 26 09:17:09 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1-198 have 31% similarity to PG0394, a predicted ferredoxin oxidoreductase beta chain. Residues 4-164 have 27% similarity to PG0607, a predicted indolepyruvate ferredoxin oxidoreductase, alpha subunit.","Tue Jun 26 09:17:09 MDT 2001","Mon Mar 5 13:57:03 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 2 to 201 (E-value = 4.4e-56) place PG1582 in the TPP_enzyme_C family which is described as Thiamine pyrophosphate enzyme, C-terminal TPP binding domain (PF02775)","Tue Jun 26 09:17:09 MDT 2001","34541430","","","","","","1","","","PG1810" "PG1583","1908200","1907142","1059","ATGAAGGGCAATGAAGCCCTTGCGCACTCGGCAATACGTAACGGTGTGGATGGCTACTTCGGCTATCCTATCACTCCGCAGTCTGAAGTTATGGAAACGCTCATGGAGGAGCATCCATGGGATACGACCGGTATGGTTGTCTTGCAGGCAGAGAGCGAAGTCGCTGCCATTAACATGGTTTATGGCGGTGCCAGCTGTGGCAAAATGGTGATGACCTCTTCCTCCAGCCCGGGTATGAGTCTTAAGCAAGAAGGAGTGAGCTATTGTGCCGGTGCCGAATTGCCCTGCTTGATTGTAAATGTTATGCGTGGGGGTCCCGGCTTGGGAACCATCCAACCCGGACAGGCCGACTATTTCCAATCTGTCAAGGGTGGTGGACATGGTGACTATCGTCTGATCACATTGGCACCCAACTCCGTACAAGAGATGGTTGACTTCGTTGGTCTGGGACTGGAGCTGGCATTCAAGTACCGCAATCCTGCACTCATCCTTTCCGACGGTATCATCGGTCAGATGATGGAAAAGGTGATATTGCCTCCGTTCAAAAAGCGTCGTACCGAAGATGAAATCCGCAAACAATGCCCGTGGGCAACTCTCGGTCGAAAAGGAGGTCGTCAGCCGAATATCATTACCTCTCTCGAGCTTGATTCGGCCGTTATGGAGCAGAACAACCTCCGCTTCCAAAAGAAGTATGCAGAGATCGAAGCCAATGAAGTTCGCTACGAAGAGTATCAGACGGAAGATGCCGACTATATCCTCGTTGCATTCGGATCTTCTGCTCGTATCTGCAATAAAACGGTACAGCTTGCACGCCAGCAGGGTATCAAGGCAGGTATCTTGCGCCCGATTACCTTGTGGCCGTTCCCGACCAAGGAGATCGCCAAGCTGGCCGATCGTGCCAAGGGCTTCCTTGTGGCAGAGCTGAATGCCGGTCAGATGATAGAAGACGTCCGTTTGGCCGTAAACGGCAAGGTTCCCGTAGAGCACTATGGTCGTATGGGCGGTATGCTCTTCTCTCCTGATGAGATTCTGCAAGCACTCAAAGAGAAAGTAATCAAA","6.20","-2.25","38728","MKGNEALAHSAIRNGVDGYFGYPITPQSEVMETLMEEHPWDTTGMVVLQAESEVAAINMVYGGASCGKMVMTSSSSPGMSLKQEGVSYCAGAELPCLIVNVMRGGPGLGTIQPGQADYFQSVKGGGHGDYRLITLAPNSVQEMVDFVGLGLELAFKYRNPALILSDGIIGQMMEKVILPPFKKRRTEDEIRKQCPWATLGRKGGRQPNIITSLELDSAVMEQNNLRFQKKYAEIEANEVRYEEYQTEDADYILVAFGSSARICNKTVQLARQQGIKAGILRPITLWPFPTKEIAKLADRAKGFLVAELNAGQMIEDVRLAVNGKVPVEHYGRMGGMLFSPDEILQALKEKVIK","1908221 1907142 [Shorter 2053 1056 99]","Beta and gamma subunits are immediately downstream at PG1581 and PG1582.TIGR ID: PG1812","ketoisovalerate/2-oxoisovalerate oxidoreductase alpha subunit","Cytoplasm","Numerous significant hits to oxidoreductase proteins in gapped BLAST; e.g. residues 1-349 are 54% similar to gb|AAD36824.1|AE001814_6 2-oxoisovalerate oxidoreductase, beta subunit, putative of Thermotoga maritima, residues 1-349 are 49% similar to sp|O26800|VORB_METTH ketoisovalerate oxidoreductase subunit (2-oxoisovalerate oxidoreductase beta chain) (2-oxoisovalerate-ferredoxin oxidoreductase beta subunit) of Methanobacterium thermoautotrophicum, residues 1-347 are 35% similar to gb|AAB85529.1| 2-oxoglutarate oxidoreductase, alpha subunit of Methanothermobacter thermautotrophicus.This sequence corresponds to BT0331.","
InterPro
IPR002880
Domain
Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal
PF01855\"[9-180]TPOR_N
InterPro
IPR005476
Domain
Transketolase, C-terminal
PF02780\"[237-351]TTransketolase_C
InterPro
IPR009014
Domain
Transketolase, C-terminal-like
G3DSA:3.40.50.920\"[239-349]TTransketo_C_like
SSF52922\"[239-349]TTransketo_C_like
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.970\"[1-190]TG3DSA:3.40.50.970
SSF52518\"[1-256]TSSF52518


","BeTs to 11 clades of COG0674COG name: Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunitFunctional Class: CThe phylogenetic pattern of COG0674 is AMTKYQVce-r-UJ---l---Number of proteins in this genome belonging to this COG is 4","***** PF01855 (Pyruvate flavodoxin/ferredoxin oxidoreductase (N terminus)) with a combined E-value of 5.3e-12. PF01855A 17-30 PF01855B 72-84 PF01855C 248-257 PF01855D 277-288","Residues 55-179 are 63% similar to a (OXIDOREDUCTASE SUBUNIT PYRUVATE ALPHA) protein domain (PD001493) which is seen in O26800_METTH.Residues 248-296 are 48% similar to a (OXIDOREDUCTASE PYRUVATE SUBUNIT ALPHA) protein domain (PD150584) which is seen in O26800_METTH.","","Thu Jun 14 12:16:33 MDT 2001","","Thu Jun 14 12:16:33 MDT 2001","Thu Jun 14 12:16:33 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:16:33 MDT 2001","Thu Jun 14 12:16:33 MDT 2001","","Thu Mar 28 10:49:10 2002","Wed May 16 16:18:32 MDT 2001","Tue Dec 2 16:12:34 2003","Thu Mar 28 10:49:10 2002","Tue Jun 26 09:13:12 MDT 2001","Tue Jun 26 09:13:12 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1-349 have 24% similarity to PG0393, a predicted pyruvate synthase alpha subunit/ ferredoxin oxidoreductase, alpha subunit. Similarities are also seen to PG0498, a predicted pyruvate ferredoxin/flavodoxin oxidoreductase.","Tue Jun 26 09:13:12 MDT 2001","Mon Mar 5 14:17:41 MST 2001","-52% similar to PDB:1YD7 Conserved hypothetical protein Pfu-1647980-001 from Pyrococcus furiosus (E_value = 9.6E_52);","","","Residues 9 to 239 (E-value = 1.2e-52) place PG1583 in the POR_N family which is described as Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-binding domain (PF01855)","Tue Jun 26 09:13:12 MDT 2001","34541432","","","","","","1","","","PG1812" "PG1584","1908467","1908243","225","ATGGCAAAAATCAGAGGAGCTGTGGTCGTTAATACCCAGCGTTGCAAAGGTTGCAATCTATGTGTAGTGGCTTGCCCGACAAAAGTGCTGGAGCTACACCCGAATGAAGTCAATGACAAAGGCTATCATTACTCTTATATGAAAGATCCCGAAAGCTGTATCGGCTGCACCAGTTGTGCAACGGTATGCCCGGATGCATGTATCACGGTTTACAAAGTGAAATTG","0.00","0.00","8167","MAKIRGAVVVNTQRCKGCNLCVVACPTKVLELHPNEVNDKGYHYSYMKDPESCIGCTSCATVCPDACITVYKVKL","","TIGR ID: 1813","possible ferredoxin","Periplasm, Inner membrane, Cytoplasm","Numerous hits using gapped BLAST to various proteins, including residues 4-74 are 43% similar to gi|4982337|gb|AAD36823.1 (AE001814) 2-oxoisovalerate oxidoreductase, gamma subunit, in Thermotoga maritima, residues 8-70 are 42% similar to gi|14520719|ref|NP_126194.1| 2-ketoglutarate ferredoxin oxidoreductase, subunit delta, in Pyrococcus abyssi and residues 7-70 are 45% similar to gi|4155083|gb|AAD06118.1| subunit of 2-oxoglutarate oxidoreductase in H. pylori.","
InterPro
IPR001450
Domain
4Fe-4S ferredoxin, iron-sulfur binding
PR00353\"[8-19]T\"[20-31]T4FE4SFRDOXIN
PF00037\"[8-31]T\"[46-69]TFer4
PS00198\"[15-26]T\"[53-64]T4FE4S_FERREDOXIN
noIPR
unintegrated
unintegrated
G3DSA:3.30.70.20\"[8-73]TG3DSA:3.30.70.20
SSF54862\"[5-73]TSSF54862


","BeTs to 6 clades of COG01146COG name: Ferredoxin 3Functional Class: CThe phylogenetic pattern of COG0593 is AMTK--Vce-R-uj------x Number of proteins in this genome belonging to this COG is 1","","","Thu Jul 5 13:37:23 MDT 2001","Thu Jul 5 13:37:23 MDT 2001","Thu Jul 5 13:37:23 MDT 2001","Thu Jul 5 13:37:23 MDT 2001","Thu Jul 5 13:37:42 MDT 2001","Thu Jul 5 13:37:23 MDT 2001","Thu Jul 5 13:37:23 MDT 2001","Thu Jul 5 13:37:42 MDT 2001","Thu Jul 5 13:37:42 MDT 2001","Thu Jul 5 13:37:23 MDT 2001","Thu Jul 5 13:37:23 MDT 2001","Thu Jul 5 14:01:47 MDT 2001","Thu Jul 5 14:01:47 MDT 2001","Thu Jul 5 13:44:54 MDT 2001","Thu Jul 5 13:37:23 MDT 2001","Thu Jul 5 13:37:23 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Thu Jul 5 13:44:54 MDT 2001","Thu Jul 5 13:37:23 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 8 to 31 (E-value = 1.4e-06) place PG1584 in the Fer4 family which is described as 4Fe-4S binding domain (PF00037)Residues 46 to 69 (E-value = 1.3e-05) place PG1584 in the Fer4 family which is described as 4Fe-4S binding domain (PF00037)","Thu Jul 5 13:37:23 MDT 2001","34541433","","","","","","1","Thu Jul 5 13:37:23 MDT 2001","","PG1813" "PG1585","1910720","1908702","2019","ATGATTGACGATCTGACTCGAGAAAGGATACTCGATGCGGCCAATATCGTAGAGGTCGTAAGCGACTTTGTTTCGCTCCGTAAGCGTGGAGTGAACTACCTCGGCTTGTGTCCTTTCCATAGCGATCGCAATCCTTCGTTCTCTGTGTCGCCGGCAAAAAACCTCTGCAAATGCTTCGCCTGTGGCGAAGGAGGCTCACCTGTTCATTTCATCATGAAAATAGAACAGCTCAGCTATAGCGAAGCCTTGCGCTATTTGGCACGTAAGTACGGGATCAAGATTCACGAACGGGAGCTGACCGATGAGGAGAAGAAACTCAAGAGCGATAGAGAAAGTATGTTCATTCTCAATGAGTTTGCCAATGACTTCTTCAAAAACAACCTTCTCAATACCATCGAAGGCCAGACCATTGGGATGACATACTTCCGCCAAAGAGGTATTCGTCCGGAGACTGTGCAGAAGTTCCAACTCGGCTATGCTCCTGAAAAGAGGTCGGCTTTCAGCGACGAAGCCATACGAAAAGGGTTCAAGCCCGAATACTTAGTCGACACAGGGCTTTCCATCCGATACGAAGACAGCAAGGCCTTAGATGACCGTTTCCGCGGGCGAGTCATTTTCCCCGTACAGACCGTAAGCGGCAAGATCGTAGCCTTCGGAGGAAGAATCTTAGGAAAGAAAGACAAGGCCGCCAAGTATGTCAATTCTCCCGAAAGCATCATCTACTCGAAGAGCAAAGAGCTGTACGGGCTATTCTTGGCCAAGAAAGAGATTGCTCGCCGAGATAAGTGCTTCCTTGTTGAGGGTTATACAGATGTCATTTCGATGCATCAATCCGGTATCGAAAATGTGGTGGCTTCCTCCGGAACAGCTCTGACACAGCAGCAGATCAACCAAATACACCGCTTTACTTCGAACATCACAGTTCTATACGATGGTGATGCGGCTGGAATCAAGGCAGCTCTGCGAGGTATCAACCTGCTACTGGAGCAAGGCATGCACGTGAAAGTGGCCCTCCTGCCCGATGGAGAAGATCCGGACAGTTTTGCTCGCAATCATACCGTAGCAGAGTTCGAAGAATATATCGAGCAGCATGAAACGGATTTTATTCGCTTCAAGACACAGCTCTATCTGAGCGATATGGAGCGTGACCCCATACGAAGAGCACAGCTAATTACCGATATTATCGGCAGTATCGCTCTGATCCCCGATGACATCACACGCCGTGTCTATGTCCAAGAGACAGGCCAAACGCTTAGTATGGATGAGCGACTGCTGGCTCGCGAAGTCCAAAAGATGAGGTTCCGTAGGAGTACGTACTCCTCCCCGCAACCCGCCACCCAACAGCCGGCGAATGGCTCTGAAAGAAAAAACGATTCCGACAATCTCGTAGGTGCGGAAAACCATAGTGCCGAAACTCCTACCGATAATCGTTCAGCGGAGGTGGAGCAACCTTACTATCCGGCCAAATACGAAGAGGAGTTACTCCGTCTGATCATTCGCTACGGCGAAAGAAAACTCCTCATATACAGGCATGAAGAAGGAGCGGAAAAGCAGACTCCATCGGAGGTTGCCTTGGCATATTACATCAAATCAGACTTGAATGCGGATGGAGTGGATATTGGTACTGATGTGTTTAGGCAGATTCTCGATGAGGCTGCCGAACAATCGTTCGACAGTGGTTTTGTCGCAGCCAAATATTTCAGAGATCACCCCAATGCACAGATCAGTCATATCGCAGTCGAGCTACTGACCAACCGCTATGCATTGAGCCGTATTCACTATGGGAAAGGGGATGAGAGCAATGCGGAAGAAGACCTTCAGATGCGAGTGGAACGCGAACTTCTCACCATCAAAAATGTTTTTATTCAGGTACAAATCCGTGCTTTGCAAAAAGAAATCGCACAAGCTCAAAAAGCCGGCGACATCGAATTGCAATTAGAAATAATGAACGAACTGCGCAGCATGAACGAAATGAAAAGCGAGTTAGCGCATCGTCTGGGGGATCGCACCGTATTGCCC","6.10","-7.77","76661","MIDDLTRERILDAANIVEVVSDFVSLRKRGVNYLGLCPFHSDRNPSFSVSPAKNLCKCFACGEGGSPVHFIMKIEQLSYSEALRYLARKYGIKIHERELTDEEKKLKSDRESMFILNEFANDFFKNNLLNTIEGQTIGMTYFRQRGIRPETVQKFQLGYAPEKRSAFSDEAIRKGFKPEYLVDTGLSIRYEDSKALDDRFRGRVIFPVQTVSGKIVAFGGRILGKKDKAAKYVNSPESIIYSKSKELYGLFLAKKEIARRDKCFLVEGYTDVISMHQSGIENVVASSGTALTQQQINQIHRFTSNITVLYDGDAAGIKAALRGINLLLEQGMHVKVALLPDGEDPDSFARNHTVAEFEEYIEQHETDFIRFKTQLYLSDMERDPIRRAQLITDIIGSIALIPDDITRRVYVQETGQTLSMDERLLAREVQKMRFRRSTYSSPQPATQQPANGSERKNDSDNLVGAENHSAETPTDNRSAEVEQPYYPAKYEEELLRLIIRYGERKLLIYRHEEGAEKQTPSEVALAYYIKSDLNADGVDIGTDVFRQILDEAAEQSFDSGFVAAKYFRDHPNAQISHIAVELLTNRYALSRIHYGKGDESNAEEDLQMRVERELLTIKNVFIQVQIRALQKEIAQAQKAGDIELQLEIMNELRSMNEMKSELAHRLGDRTVLP","1910720 1908702","This is a polymerase that synthesizes short RNA primers for replication forks during DNA replication/synthesis. In B. subtilis it is a monomer.TIGR ID: PG1814","DNA primase","Cytoplasm","This protein is similar to CT794, a predicted DNA primase, and to BT3932.Numerous significant hits in gapped BLAST to DNA primases; e.g. residues 15-657 are 25% similar to Q04505 of Lactococcus lactis, residues 8-422 are 30% similar to AE002284 of Chlamydia muridarum, residues 6-428 are 37% similar to AP001511 of Bacillus halodurans.","
InterPro
IPR002694
Domain
Zinc finger, CHC2-type
PD002988\"[24-86]TZnf_CHC2
PF01807\"[2-99]Tzf-CHC2
SM00400\"[33-87]TZnF_CHCC
InterPro
IPR006154
Domain
Toprim subdomain
SM00493\"[261-332]TTOPRIM
InterPro
IPR006171
Domain
TOPRIM
PF01751\"[261-340]TToprim
InterPro
IPR006295
Domain
DNA primase
TIGR01391\"[1-418]TdnaG
InterPro
IPR006647
Domain
Toprim, primase
PD002276\"[121-412]TToprim_primase
InterPro
IPR013264
Domain
DNA primase catalytic core, N-terminal
G3DSA:3.90.980.10\"[112-242]TToprim_N
PF08275\"[123-254]TToprim_N
noIPR
unintegrated
unintegrated
G3DSA:3.40.1360.10\"[243-366]TG3DSA:3.40.1360.10
G3DSA:3.90.580.10\"[1-100]TG3DSA:3.90.580.10
SSF56731\"[112-427]TSSF56731
SSF57783\"[1-100]TSSF57783


","BeTs to 16 clades of COG0358COG name: DNA primase (bacterial type)Functional Class: LThe phylogenetic pattern of COG0358 is amtk-qvcebrhujGPolinxNumber of proteins in this genome belonging to this COG is 2","***** PF01807 (CHC2 zinc finger) with a combined E-value of 1.1e-81. PF01807A 35-83 PF01807B 141-158 PF01807C 197-217 PF01807D 230-247 PF01807E 264-297 PF01807F 310-319 PF01807G 339-351","Residues 213-352 are 48% similar to a (PRIMASE DNA TRANSFERASE REPLICATION DNA-DIRECTED RNA) protein domain (PD002276) which is seen in PRIM_CLOAB.Residues 111-208 are 34% similar to a (PRIMASE DNA TRANSFERASE REPLICATION) protein domain (PD003861) which is seen in PRIM_BACSU.Residues 33-89 are 50% similar to a (PRIMASE DNA TRANSFERASE REPLICATION) protein domain (PD002988) which is seen in PRIM_SYNP7.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Sat Jan 3 10:16:37 2004","Wed Mar 29 15:36:27 MST 2000","Sat Jan 3 10:16:37 2004","Wed Dec 20 16:04:03 MST 2000","Thu Jun 7 14:09:23 MDT 2001","Thu Jun 7 14:09:23 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Wed Dec 20 16:29:43 MST 2000","Thu Jun 7 14:09:23 MDT 2001","-56% similar to PDB:2AU3 Crystal Structure of the Aquifex aeolicus primase (Zinc Binding and RNA Polymerase Domains) (E_value = 5.6E_65);-54% similar to PDB:1DD9 STRUCTURE OF THE DNAG CATALYTIC CORE (E_value = 1.3E_42);-54% similar to PDB:1DDE STRUCTURE OF THE DNAG CATALYTIC CORE (E_value = 1.3E_42);-54% similar to PDB:1EQN E.COLI PRIMASE CATALYTIC CORE (E_value = 2.3E_42);-64% similar to PDB:1D0Q STRUCTURE OF THE ZINC-BINDING DOMAIN OF BACILLUS STEAROTHERMOPHILUS DNA PRIMASE (E_value = 1.2E_19);","","","Residues 2 to 99 (E-value = 1.7e-41) place PG1585 in the zf-CHC2 family which is described as CHC2 zinc finger (PF01807)Residues 261 to 340 (E-value = 4e-20) place PG1585 in the Toprim family which is described as Toprim domain (PF01751)","Sat Jan 3 10:16:37 2004","34541434","","","Wang,L.F., Price,C.W. and Doi,R.H. 1985. Bacillus subtilis dnaE encodes a protein homologous to DNA primase of Escherichia coli. J. Biol. Chem. 260 (6): 3368-3372. PubMed: 3919021.Smiley,B.L., Lupski,J.R., Svec,P.S., McMacken,R. and Godson,G.N. 1982. Sequences of the Escherichia coli dnaG primase gene and regulation of its expression. Proc. Natl. Acad. Sci. U.S.A. 79 (15), 4550-4554. PubMed: 6750604.","","Thu Apr 6 16:36:45 MDT 2000","1","","","PG1814" "PG1586","1911526","1910765","762","ATGAATACAGAGGTAATAGCCATCATTCCGGCTCGATTTGCTTCCAGCCGATTCCCGGGCAAGCCACTGGCCGATATGCTTGGCAAGTCTATGATCCAACGGGTACATGAGCGAATAGTCGGTGTCGTCCCCCGGGCCGTCGTAGCCACCGATGACGAACGTATCCGTCAGGCCGTGGAGGACTTCGGAGGAGAGGTGGTGATGACGTCCCCAGAGTGCAGTAGTGGTACAGAACGCTGTCGGGAGGCATTCGACAAAGTAGGTCGGGGAGAAAAGATCGTCCTGAATCTGCAAGGCGATGAACCTTTTATCCAAAAGGAACAGATCGATCTGCTGATTTCGGCCTTCGACAAACCAGAAACCGATATAGCTACGTTAGCAGAAGTTTTCTCGTCTGACGTAAGCTTCGAGCGTTTGAACAATCCAAACAGCCCGAAGATCGTATTGGATCATGGAGGCTATGCCCTTTATTTCAGCCGCTCCGTTATCCCATATCTCAGGGGGGTACAGCCTGACTCTTGGTGCCGTCGGCATACTTACTACAAGCATATCGGGATCTATGCCTTTCGCCCGACCGTCCTCCGCAAGATAACCTCACTGCCACAAAGTACGGCAGAGCAAGCCGAAAGTCTCGAACAGCTTCGCTGGCTGGAATACGGCTATCGGATTCGAGTGCTGCAAACACAGCAGAGTACGATAGGAATCGATACGCCGGAGGATATGGAGAAGGCCATAGCCTATCTCCGTTCGCAGGGAATGGAA","5.80","-3.16","28715","MNTEVIAIIPARFASSRFPGKPLADMLGKSMIQRVHERIVGVVPRAVVATDDERIRQAVEDFGGEVVMTSPECSSGTERCREAFDKVGRGEKIVLNLQGDEPFIQKEQIDLLISAFDKPETDIATLAEVFSSDVSFERLNNPNSPKIVLDHGGYALYFSRSVIPYLRGVQPDSWCRRHTYYKHIGIYAFRPTVLRKITSLPQSTAEQAESLEQLRWLEYGYRIRVLQTQQSTIGIDTPEDMEKAIAYLRSQGME","1911688 1910765 [Bad Olap 2056 163 0]","From gi:13431621:CMP-KDO synthetase activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in gram negative bacteria.TIGR ID: PG1815","3-deoxy-manno-octulosonate cytidylyltransferase (CMP-2-keto-3-deoxyoctulosonic acid synthetase) (CMP-KDO synthetase)","Cytoplasm","Numerous significant hits in gapped BLAST to CMP-KDO synthetases; e.g. residues 3-254 are 40% similar to AJ242474 of Zea mays, residues 3-251 are 42% similar to X74567 of Escherichia coli, residues 3-248 are 41% similar to AE006124 of Pasteurella multocida.","
InterPro
IPR003329
Family
Acylneuraminate cytidylyltransferase
PF02348\"[6-223]TCTP_transf_3
InterPro
IPR004528
Family
3-deoxy-D-manno-octulosonate cytidylyltransferase
TIGR00466\"[3-242]TkdsB
noIPR
unintegrated
unintegrated
G3DSA:3.90.550.10\"[5-248]TG3DSA:3.90.550.10
PTHR21485\"[10-254]TPTHR21485
PTHR21485:SF4\"[10-254]TPTHR21485:SF4
SSF53448\"[1-249]TSSF53448


","BeTs to 5 clades of COG1212COG name: CMP-2-keto-3-deoxyoctulosonic acid synthetaseFunctional Class: MThe phylogenetic pattern of COG1212 is -----q--e--huj----inxNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 137-242 are 47% similar to a (3-DEOXY-MANNO-OCTULOSONATE CYTIDYLYLTRANSFERASE) protein domain (PD011218) which is seen in O66914_AQUAE.Residues 6-125 are 47% similar to a (SYNTHETASE ACID CYTIDYLYLTRANSFERASE) protein domain (PD007621) which is seen in Q9Z8U9_BBBBB.","","Thu Jun 14 12:17:01 MDT 2001","","Thu Jun 14 12:17:01 MDT 2001","Thu Jun 14 12:17:01 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:17:01 MDT 2001","Thu Jun 14 12:17:01 MDT 2001","","Tue Jun 26 09:08:34 MDT 2001","Thu Jun 7 14:18:25 MDT 2001","Tue Jun 26 09:08:34 MDT 2001","Tue May 22 15:43:20 MDT 2001","","Tue Jun 26 09:08:34 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue May 22 15:43:20 MDT 2001","-60% similar to PDB:1GQ9 THE STRUCTURE OF CMP:2-KETO-3-DEOXY-MANNO-OCTONIC ACID SYNTHETASE COMPLEXED WITH CTP AT 100K (E_value = 2.7E_47);-60% similar to PDB:1GQC THE STRUCTURE OF CMP:2-KETO-3-DEOXY-MANNO-OCTONIC ACID SYNTHETASE COMPLEXED WITH CMP-KDO AT 100K (E_value = 2.7E_47);-60% similar to PDB:1H6J THE THREE-DIMENSIONAL STRUCTURE OF CAPSULE-SPECIFIC CMP:2-KETO-3-DEOXY-MANNO-OCTONIC ACID SYNTHETASE FROM ESCHERICHIA COLI (E_value = 2.7E_47);-60% similar to PDB:1H7E THE STRUCTURE OF CMP:2-KETO-3-DEOXY-MANNO-OCTONIC ACID SYNTHETASE AND OF ITS COMPLEXES WITH SUBSTRATES AND SUBSTRATE ANALOGUES, APO-ENZYME (E_value = 2.7E_47);-60% similar to PDB:1H7F THE STRUCTURE OF CMP:2-KETO-3-DEOXY-MANNO-OCTONIC ACID SYNTHETASE AND OF ITS COMPLEXES WITH SUBSTRATES AND SUBSTRATE ANALOGUES, CMP COMPLEX (E_value = 2.7E_47);","","","Residues 6 to 223 (E-value = 3.8e-61) place PG1586 in the CTP_transf_3 family which is described as Cytidylyltransferase (PF02348)","Tue Jun 26 09:08:34 MDT 2001","34541435","","","","","","1","","","PG1815" "PG1587","1912044","1911526","519","ATGAAAAAAACGCTCGTAATAGTCGTTCACCCCGATTTGACCAAATCCGTTATCAACAAGGCTTGGGCCAAAGCCATCGAAGGTGCAGCCACTATCCACCATCTCTACGAACAGTATCCGAACGGACAAATCGATCTAGCACATGAACAAGCCCTGCTGGAGGCTCATGACCGCATCGTCTTCCAATTCCCCCTCTATTGGTATGCAGCTCCCTATCTGCTGAAGAAGTGGATGGACGAGGTCTTTACTGAGGGCTGGGCCTATGGTGCCGGTGGAGACAAGATGGAGGGTAAAGAAATCTGTGCAGCAGTCTCCTGCGGATCACCCAAATCAGCTTTTGCCGAAGGAGCACAGCAATGCCACACGCTGCGAAGCTACTTGAATGTATTCGACGGGATAGCTGCTTTCCTGCGCGCTCGATTCACCGGCTACCATGCCTGCTACGATTCCTACAATCCTCGCCTGCCGGAAATGCTGCCGGCCAACTGCGAAGCCTATCTCCGCTTTATCAAAGGAGAA","6.90","-0.56","19496","MKKTLVIVVHPDLTKSVINKAWAKAIEGAATIHHLYEQYPNGQIDLAHEQALLEAHDRIVFQFPLYWYAAPYLLKKWMDEVFTEGWAYGAGGDKMEGKEICAAVSCGSPKSAFAEGAQQCHTLRSYLNVFDGIAAFLRARFTGYHACYDSYNPRLPEMLPANCEAYLRFIKGE","1912044 1911526 [Shorter 2055 163 99]","TIGR ID: PG1816","NAD(P)H oxidoreductase; quinone reductase","Cytoplasm","Residues 3-141 have 48% similarity to D84432, B. subtilis NAD(P)H oxidoreductase homolog.Residues 3-171 have 42% similarity to AJ249401, L. innocua putative NAD(P)H oxidoreductase. Residues 3-138 have 38% similarity to AE000411, E. coli putative NAD(P)H oxidoreductase. ","
InterPro
IPR003680
Family
Flavodoxin-like fold
PF02525\"[2-117]TFlavodoxin_2
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.360\"[3-150]TG3DSA:3.40.50.360
SSF52218\"[1-172]TSSF52218


","BeTs to 3 clades of COG2249COG name: Putative NADPH-quinone reductase, YabF family (modulator of drug activity B)Functional Class: RThe phylogenetic pattern of COG2249 is --------EB-Huj-------Number of proteins in this genome belonging to this COG is 1","***** BP04598 (OXIDOREDUCTASE NAD REDUCTASE P H PROTE) with a combined E-value of 4.9e-21. BP04598 57-87","Residues 3-141 are 48% similar to a (OXIDOREDUCTASE NADPH PROTEIN PUTATIVE) protein domain (PD004598) which is seen in YRKL_BACSU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon Mar 5 15:38:41 MST 2001","Mon Mar 5 15:38:41 MST 2001","Mon Mar 5 15:38:41 MST 2001","Mon Mar 5 15:38:41 MST 2001","Mon Mar 5 15:38:41 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Mar 5 15:38:41 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 2 to 171 (E-value = 2.3e-32) place PG1587 in the Flavodoxin_2 family which is described as Flavodoxin-like fold (PF02525)","Wed May 16 16:37:04 MDT 2001","34541436","","","","","","1","","","PG1816" "PG1588","1913128","1912316","813","ATGATTGACATCCTGCCTTTACTTGATTGGCATCATTTTGTCTATTTTGCGATACCAGCAGTACTACTGCTTATAGTGTCAGCTCTATTCGCTTTGTACCAACGTCGGGTATGGGCTATTTGCATCGCTATCGCAGCAGCTTGTGTACTGATGTTTTTTATCGGAGGCATGTGGCATTCTCTGGAACGACCTCCTCTAAGAACGATGGGAGAAACCCGACTTTGGTATTCTTTTTTTGTGATCATTGCAGGCCTTATCATTTATATACGATGGAAATATCGGTGGATCCTTTCTTTTGCCACCGTCTTGTCCACGGTCTTCATGATTATAAACATAGCCAAACCGGATATCCACAACAAGACATTGATGCCGGCTCTCGAAAGTCCGTTCTTCGTACCCCACGTAATCTCCTACATCTTTGCATATGCCATGCTGGGGGCGGCACTGCTCGTAGGCGGCTACTTCCTCTTTTGCAAGCGCAAACACAAAGAGGTGAATGCAAAAGTCATGATGCATACGACTGACAATCTGGTCTACACGGGATTTGCTTTTTTGATGACGGGACTGCTATTAGGCGCTATTTGGGCCAAACTTGCATGGGGCACCTATTGGAATTGGGATCCGAAAGAAACATGGGCTGCAATAACCGTATTCAGCTACTTGCTCTACATCCATCACCGGCTCCATCGTCCTCGAGCTTTTGCCCATTCTTTGGTATTGCTAATCGTCAGTTTCCTTTTCCTGCAAATCTGCTGGTATGGGGTCAACTACCTTCCATCCGCTAAAGACTCCAGCATTCATACCTACACACGT","10.40","13.68","31453","MIDILPLLDWHHFVYFAIPAVLLLIVSALFALYQRRVWAICIAIAAACVLMFFIGGMWHSLERPPLRTMGETRLWYSFFVIIAGLIIYIRWKYRWILSFATVLSTVFMIINIAKPDIHNKTLMPALESPFFVPHVISYIFAYAMLGAALLVGGYFLFCKRKHKEVNAKVMMHTTDNLVYTGFAFLMTGLLLGAIWAKLAWGTYWNWDPKETWAAITVFSYLLYIHHRLHRPRAFAHSLVLLIVSFLFLQICWYGVNYLPSAKDSSIHTYTR","1913188 1912316","TIGR ID: PG1817","cytochrome c-type synthesis protein (cytochrome c biogenesis protein)","Inner membrane, Cytoplasm","Residues 46-269 have 29% similarity to X57150, C. caldarium cytochrome c-type synthesis protein homolog.Residues 96-269 have 33% similarity to U09190, C. reinhardtii cytochrome c-type synthesis protein.Residues 65-271 have 27% similarity to AJ245540, W. succinogenes NrfI protein.","
InterPro
IPR002541
Family
Cytochrome c assembly protein
PF01578\"[79-262]TCytochrom_C_asm
InterPro
IPR003557
Family
Cytochrome c-type biogenesis protein CcmC
PR01386\"[181-201]T\"[202-222]TCCMCBIOGNSIS


","BeTs to 8 clades of COG0755COG name: Cytochrome c biogenesis factors, CcmC familyFunctional Class: OThe phylogenetic pattern of COG0755 is a----Q-ceBrhuj------xNumber of proteins in this genome belonging to this COG is 1","***** PR01386 (Cytochrome c-type biogenesis protein CcmC signature) with a combined E-value of 1.2e-06. PR01386C 181-201 PR01386D 202-222","Residues 177-256 are 43% similar to a (PROTEIN CYTOCHROME C BIOGENESIS) protein domain (PD000973) which is seen in CCSA_TOBAC.","","Thu Jun 14 12:17:10 MDT 2001","","Thu Jun 14 12:17:10 MDT 2001","Thu Jun 14 12:17:10 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:17:10 MDT 2001","Thu Jun 14 12:17:10 MDT 2001","","","Wed May 16 16:59:49 MDT 2001","Tue Jun 26 09:04:48 MDT 2001","Mon Mar 5 15:55:39 MST 2001","Tue Jun 26 09:04:48 MDT 2001","Tue Jun 26 09:04:48 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Mar 5 15:55:39 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 58 to 262 (E-value = 2.2e-17) place PG1588 in the Cytochrom_C_asm family which is described as Cytochrome C assembly protein (PF01578)","Tue Jun 26 09:04:48 MDT 2001","34541437","","","","","","1","","","PG1817" "PG1589","1913837","1913124","714","GTGGAGGGGCATAGACCAACGGACAAAAAAATGGTGGAACTCCCCGTAGCCATAGAACTAAAAAAGTTCGAAATAGCAGAGTACCCTCCCAAATTGATGATCATACGCAACAATAGTGGCAAGGCTCTTCCCTATTCTCGTCCGGCGCATCTGTCCATAGATCGGACTCCTTCCAAGGGAACGATAGACCGCTGGCAGATCGAGGTATTGGCGCATCTGCCTTATTCGGCTGCTGTCGTGACCAAAGACTCCGTTGTCTTCCGCGAATTCAGGTCATTGGGAGCCGTACATTCAGCCAGAGTAAGAGCTGCGAATTTAGATTTTCCCCAAGAAGTGGTATCCGGTTGGGTGTCATCGGGTAGCCATGTATTTCCCTATCGAAGCTTACGATTAACGGACAGTCTGTCGCTCGTGATGGCAGAACCCGATCCGAAACAATACAGCTCGCAGGTATACCTATACGCTGAGAATGGCGAGATCGACAGCGCGACTATACTGGTCAATAAACCGCTCCGTTACAGAGGGTGGTATATCTATCAGCTTAGCTACAATCGCGAACAAGGGCGATGGAGTACGATGTCGGAGTTGGAGCTGGTCAAAGACGATTGGCTCTATGGCGTTTATACAGGTATCGGCTTGCTGCTGATAGGTGCCGCAATGCTTTTCCTCGGGCCTATACCAGCAAGTACACAAGCAAAAAGAGAAGATCATGAT","9.00","2.45","26898","VEGHRPTDKKMVELPVAIELKKFEIAEYPPKLMIIRNNSGKALPYSRPAHLSIDRTPSKGTIDRWQIEVLAHLPYSAAVVTKDSVVFREFRSLGAVHSARVRAANLDFPQEVVSGWVSSGSHVFPYRSLRLTDSLSLVMAEPDPKQYSSQVYLYAENGEIDSATILVNKPLRYRGWYIYQLSYNREQGRWSTMSELELVKDDWLYGVYTGIGLLLIGAAMLFLGPIPASTQAKREDHD","1913837 1913124","TIGR ID: PG1818","hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
noIPR
unintegrated
unintegrated
tmhmm\"[204-224]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541438","","","","","","1","","","PG1818" "PG1590","1914415","1913792","624","ATGTGGCAGGGACGCTTCGGCTATAGGGAAGGCATATTCATCATATCAGGACTTGCTTTTGTAGGTTTGTTGCTCCAGGTGATCGCAGGCCCGATACTGGCCACAGCTTTCGCTTATCCTTTCAATCTGGTCGGAGGAAGTTTGCTTCTTGCCGGCATCTTGTTTTGGGGCATATTCCATCGTAGAGCTATACGCCGCAATTCGGCCCGTTTCTCCTTTCTATCTGGCCACATAGCCACTCTGACTTCTATCGGTGGGCTACTGCTGCTTGCAGTCATCATGGGGCTGACCAAACAAATCCCCGCAGAAATGGGGAGAGGATTGCAGCATCCTATTCATCGTTTGGGACTTAGCTCCATGCTATCGGCATGGTACTTCCTGCTGCTGTATCTGTATTTGCTCTTTGTACTGGGCTGCGTTACTACAGACAGGCTTATGCGTCTGAAACTGAACCTTCGTGACGGTGCTTTCGTGATGAATCACGTGGGCTTGTTCGTCGCACTTTTTTTCGGGCTTATGTCTTCTGCCGACATCCGGCAATACAGAATGCAAGTATATTCCGACTCCGACTATCCTGAGTGGAGGGGCATAGACCAACGGACAAAAAAATGGTGGAACTCCCCG","11.20","12.14","23509","MWQGRFGYREGIFIISGLAFVGLLLQVIAGPILATAFAYPFNLVGGSLLLAGILFWGIFHRRAIRRNSARFSFLSGHIATLTSIGGLLLLAVIMGLTKQIPAEMGRGLQHPIHRLGLSSMLSAWYFLLLYLYLLFVLGCVTTDRLMRLKLNLRDGAFVMNHVGLFVALFFGLMSSADIRQYRMQVYSDSDYPEWRGIDQRTKKWWNSP","1914415 1913792","TIGR ID: PG1819","conserved hypothetical protein","Inner membrane, Extracellular","This sequence corresponds to gi:34397756 in Genbank.Its nearest neighbor in the NR database is gi:60491384 from Bacteroides fragilis NCTC 9343.","
noIPR
unintegrated
unintegrated
signalp\"[1-29]?signal-peptide
tmhmm\"[15-33]?\"[39-59]?\"[74-94]?\"[121-141]?\"[156-176]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Mar 8 15:25:50 2005","Tue Mar 8 15:25:50 2005","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 8 15:25:50 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541439","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Tue Mar 8 15:25:50 2005","","1","","","PG1819" "PG1591","1915982","1914489","1494","ATGAAAAACAAGGAACGCAAACTAAAATCCTGGCAAGGATGGCTTATTTTCAGTAGCTCTATGGTGGTGGTGTTCTGTCTGGGACTATTGGCAGCATCCGTAACGGAACGGAGAGCCGAGATCCAGAGCATATACGCCAACAAGAAGGATAAAATCGCTCCTTTTGAAGCTCGCAACGAAATGTATCGCGGTAACTATCCTCGAGAATACGAGACGTGGACTTATACCGCAGATACATCTTTCCGGTCGGAATTCAACGGCAGTCAGGCAATAGACGTATTGGAACAACGTCCCAACATGGTTATATTCTGGGCCGGCTATGCCTTCTCCAGAGATTATACATCTCCTCGCGGTCATATGCATGCTATACAGGATATGCAGCGTACCCTGCGAACCGGGAATCCGGGAATCGATGGGGCAGGAGACATGCAGCCTGCCACGTGCTGGGTATGTAAGAGTCCCGATGTGCCACGCATGATGCAAGCCATTGGAGTAGACGAATTCTATAAAAACAAATGGAGCAGTCTGGGCAGTGACATAGTGAATCCGATAGGGTGTGCAGACTGCCATGATCCGGAAACGATGGATCTGCACATCTCCCGCCCCGCGCTTATCGAAGCTTTTCAAAGACGTGGGCTGGATATAACCAAGGCTTCACATCAGGAGATGCGCTCACTCGTATGCGCCCAATGTCATGTGGAATACTACTTTAAGGGAGAAGGCAAATACCTTACTTTCCCATGGGATAAAGGAATGACAATGGAGGATGCAGAACGATATTACGATGAAGCTGAGTATTACGACTATATTCACACCCTGAGCCGCGCCCCCATTCTGAAAGCACAGCATCCGGACTTCGAGATCTCTCAACACGGAATCCATGCCCAGCGAGGTGTGTCGTGCGCCGATTGCCATATGCCATACATAAGCGAAGGAGGAGTGAAGTTCAGTGATCATCACATCACGAGTCCTTTGGCACACATGGACCGCACCTGTCAGACCTGTCACCGTGAAAGCGAGGAAGAGTTACGCAAAAACGTTTACGAACGTCAGCGGAAAGCAAATGAAGTGCGCAATCAGTTGGAAAACGAACTGGCCAAAGCGCATCTTGAAGCTCAGTTCGCCTGGGATAAAGGAGCCACAGAAAAGGAAATGACCCCCATACTTAAGTATATCCGCCAATCACAGTGGCGTTGGGACTATGGAGTGGCTTCTCATGGAGCTTCATTCCATGCACCGCAAGAGATTACACGTATTCTCAGCAACGGGCTGGAGCGTGCGATGCAAGCACGTATAGAGATAGCTCGGGTACTTGCACGTCATGGCTATACGGATGAGGTACCACTGCCTGATGTCTCCACCAAAGAAAAAGCCCAGAAGTATATAGGCTTGGATATGGATGGGTTGCACAAGAACAAAGAAAAGTTCTTGGAGACAGTGGTGCCCAAGTGGGTGAAGAAAGCAAAAGGAAAAGGTCTTTTGATAGCAGCCAAA","7.50","4.34","57257","MKNKERKLKSWQGWLIFSSSMVVVFCLGLLAASVTERRAEIQSIYANKKDKIAPFEARNEMYRGNYPREYETWTYTADTSFRSEFNGSQAIDVLEQRPNMVIFWAGYAFSRDYTSPRGHMHAIQDMQRTLRTGNPGIDGAGDMQPATCWVCKSPDVPRMMQAIGVDEFYKNKWSSLGSDIVNPIGCADCHDPETMDLHISRPALIEAFQRRGLDITKASHQEMRSLVCAQCHVEYYFKGEGKYLTFPWDKGMTMEDAERYYDEAEYYDYIHTLSRAPILKAQHPDFEISQHGIHAQRGVSCADCHMPYISEGGVKFSDHHITSPLAHMDRTCQTCHRESEEELRKNVYERQRKANEVRNQLENELAKAHLEAQFAWDKGATEKEMTPILKYIRQSQWRWDYGVASHGASFHAPQEITRILSNGLERAMQARIEIARVLARHGYTDEVPLPDVSTKEKAQKYIGLDMDGLHKNKEKFLETVVPKWVKKAKGKGLLIAAK","1915982 1914489","The small subunit is immediately upstream at PG1591.1.TIGR ID: PG1820","cytochrome c nitrite reductase large subunit","Cytoplasm, Periplasm","Residues 15-484 have 40% similarity to AJ245540, W. succinogenes catalytic subunit of cytochrome c nitrite reductase.Residues 2-484 have 39% similarity to AE006035, P. multocida NrfA.Residues 56-484 have 41% similarity to U32787, H. influenzae NrfA.This sequence is similar to BT1417.","
InterPro
IPR003321
Family
Cytochrome c552
PF02335\"[52-494]TCytochrom_C552
InterPro
IPR011031
Domain
Multihaem cytochrome
PS51008\"[181-341]TMULTIHEME_CYTC
noIPR
unintegrated
unintegrated
PD043029\"[11-431]TCytC_heme_bind
G3DSA:1.20.1270.40\"[318-465]TG3DSA:1.20.1270.40
G3DSA:3.90.910.10\"[32-317]TG3DSA:3.90.910.10
SSF48695\"[46-498]TSSF48695


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 56-484 are 41% similar to a (CYTOCHROME PRECURSOR SIGNAL C552) protein domain (PD043029) which is seen in NRFA_HAEIN.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Thu Mar 28 10:52:24 2002","Wed May 16 17:22:53 MDT 2001","Thu Dec 4 15:25:24 2003","Mon Mar 5 16:07:36 MST 2001","","Mon Mar 5 16:07:36 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Jul 22 15:48:37 2008","-61% similar to PDB:1FS9 CYTOCHROME C NITRITE REDUCTASE FROM WOLINELLA SUCCINOGENES-AZIDE COMPLEX (E_value = 4.8E_111);-61% similar to PDB:1FS7 CYTOCHROME C NITRITE REDUCTASE FROM WOLINELLA SUCCINOGENES (E_value = 1.2E_106);-61% similar to PDB:1FS8 CYTOCHROME C NITRITE REDUCTASE FROM WOLINELLA SUCCINOGENES-SULFATE COMPLEX (E_value = 1.2E_106);-61% similar to PDB:2E80 Cytochrome c Nitrite Reductase from Wolinella succinogenes with bound substrate nitrite (E_value = 1.2E_106);-61% similar to PDB:2E81 Cytochrome c Nitrite Reductase from Wolinella succinogenes with bound intermediate hydroxylamine (E_value = 1.2E_106);","","","Residues 52 to 494 (E-value = 4.7e-187) place PG1591 in the Cytochrom_C552 family which is described as Cytochrome c552 (PF02335)","Wed May 16 17:12:59 MDT 2001","34541440","","","","","","1","","","PG1820" "PG1591.1","1916615","1916007","609","ATGGCGAGGCTAAAGGTTGTATTCGAACGATTTGGGAGGAAACTTCTTCCTTCTTTCCGGCATAAGGTCTTTGCGCTGGTACTAGTTGGTGTATTCGTTGGATTAGGCGCATACCTTGTATATATGTCCAAAGCTTATAGCTACTTAAGTGACGATCCACGAGTTTGTATCAATTGCCATGTAATGGGGCCTTACTATGCCACTTGGCAACATAGTTCCCACGCGATGCGTGCCACCTGCAACGACTGTCATGTGCCACACAACAGTATTTTTAGCAAGTATTATTTCAAGGCATCAGATGGTCTGCGGCACTCCTATGTATTTACCATGAGGAACGAACCTCAACGCATGCAGGCCATATCGGCAAGTCAGGCGGTAATCTATGACAACTGTGTGCGTTGCCACGCTCAACTCAATCAAGAATTTGTCCGTACAGGAATGCTGACCAGGGCGGATATTCGTACTGCAGAAGAGAAAGCATGCTGGGACTGCCACAGAGATGTGCCTCATGGAGGCAAAAACAGCCTTAGCGCAACGCCCAACGGGATTATATCATACCCAAAGTCCCCTGTTCCGCAGTGGCTTAGGGCCTATATAAGCAAGAAGAAA","","","23216","MARLKVVFERFGRKLLPSFRHKVFALVLVGVFVGLGAYLVYMSKAYSYLSDDPRVCINCHVMGPYYATWQHSSHAMRATCNDCHVPHNSIFSKYYFKASDGLRHSYVFTMRNEPQRMQAISASQAVIYDNCVRCHAQLNQEFVRTGMLTRADIRTAEEKACWDCHRDVPHGGKNSLSATPNGIISYPKSPVPQWLRAYISKKK","","The large subunit is immediately downstream at PG1591.TIGR ID: PG1821","cytochrome c nitrite reductase small subunit","Inner membrane, Periplasm, Extracellular","Residues 43-183 have 46% similarity to AJ245540, W. succinogenes small subunit of cytochrome c nitrite reductase ","
InterPro
IPR005126
Domain
NapC/NirT cytochrome c, N-terminal
PD004960\"[76-170]TCyt_NNT
PF03264\"[16-175]TCytochrom_NNT
InterPro
IPR011031
Domain
Multihaem cytochrome
PS51008\"[51-170]TMULTIHEME_CYTC
InterPro
IPR011885
Family
Periplasmic nitrate reductase c-type cytochrome, NapC/NirT
PIRSF000013\"[1-187]T4_hem_cytch_NapC
noIPR
unintegrated
unintegrated
SSF48695\"[13-170]TSSF48695


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","Thu Mar 28 10:53:30 2002","Wed May 16 17:21:57 MDT 2001","Mon Mar 5 16:11:36 MST 2001","Mon Mar 5 16:11:36 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Jul 22 15:48:07 2008","-48% similar to PDB:2J7A CRYSTAL STRUCTURE OF CYTOCHROME C NITRITE REDUCTASE NRFHA COMPLEX FROM DESULFOVIBRIO VULGARIS (E_value = 2.8E_14);","","","Residues 16 to 175 (E-value = 3e-12) place PG1591.1 in the Cytochrom_NNT family which is described as NapC/NirT cytochrome c family, N-terminal region (PF03264)","Wed May 16 17:21:57 MDT 2001","34541441","","","","","","1","","","PG1821" "PG1592","1917460","1918110","651","GTGTTACATTGTAGAACAAAACTCAAAAAAGAACGAAAAATGAAGAAAATGATTTTGGCAGCTACTATGCTGCTCGCAACAATCGGTTTTGCAAATGCTCAGAGTCGTCCTGCTCTTAGACTGGATGCTAACTTTGTCGGTAGTAACTTAATGCAAAAAGTCGCAAACACGAGCGTGAACAATAAGATGATCGTAGGCTTACGTGTTGGTGCTGCTGCTGAGTTCGCTCTTAGCAATGATGGATTCTATCTCGCCCCCGGATTGGCCTATACGATGAGAGGTGCTAAGATGGAATCACTAAGTGAAACGACAACTCGCTTGCATTATCTGCAAATACCGGTGAATGCCGGTATGAGATTTAGCTTTGCTGACAACATGGCTATTTCATTGGAAGCAGGTCCCTATTTCGCATATGGTGTCGCCGGAACGATTAAGACTAAAGTTGCAGGCGTTACGGCTTCTGTAGATGCCTTTGGTGATAACGGATATAACCGTTTCGACTTGGGCTTGGGCTTGTCTGCTGCCTTGAGCTACGACCGTTATTACGTACAAATTGGATATGAGCATGGATTGCTTAATATGTTGAAGGATGCTCCGGATAAGACTTCTTTGCGTAATCATGACTTCTTTGTGGGTCTCGGTGTTCGCTTC","10.50","9.90","23640","VLHCRTKLKKERKMKKMILAATMLLATIGFANAQSRPALRLDANFVGSNLMQKVANTSVNNKMIVGLRVGAAAEFALSNDGFYLAPGLAYTMRGAKMESLSETTTRLHYLQIPVNAGMRFSFADNMAISLEAGPYFAYGVAGTIKTKVAGVTASVDAFGDNGYNRFDLGLGLSAALSYDRYYVQIGYEHGLLNMLKDAPDKTSLRNHDFFVGLGVRF","1917460 1918110","Veith et al. (2002) identified this protein by two-dimensional gel electrophoresis and peptide mass fingerprinting of outer membranes prepared from strain W50. They present the following results: This protein is strongly predicted by PSORT to be located in the outer membrane. The presence of few Cys residues and C-terminal phenylalanine support this conclusion. The peptide mass data indicate that the mature N-terminus of this protein is pyroglutamate.TIGR ID: PG1823","probable integral outer membrane protein P20","Outer membrane, Periplasm, Extracellular","No significant hit found in gapped BLAST with E value less than e-04.","
noIPR
unintegrated
unintegrated
signalp\"[1-33]?signal-peptide
tmhmm\"[15-33]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Thu Feb 7 16:58:16 2002","Mon Feb 11 12:23:21 2002","","Mon Mar 5 16:16:11 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 14-217 have 45% similarity to PG1782, a hypothetical protein. Residues 13-216 have 36% similarity to PG1840, hypothetical protein.","Tue Jun 5 10:28:07 MDT 2001","Mon Mar 5 16:16:11 MST 2001","-38% similar to PDB:1WZA Crystal structure of alpha-amylase from H.orenii (E_value = );-49% similar to PDB:1VDC STRUCTURE OF NADPH DEPENDENT THIOREDOXIN REDUCTASE (E_value = );-49% similar to PDB:1P4T Crystal structure of Neisserial surface protein A (NspA) (E_value = );","","","No significant hits to the Pfam 11.0 database","Tue Jun 5 10:28:07 MDT 2001","34541442","","Veith,P., Talbo,G., Slakeski,N., Dashper,S., Moore,C.,Paolini,R., Reynolds,E., Major outer membrane proteins and proteolytic processing of RgpA, and Kgp of Porphyromonas gingivalis W50, Biochem J. 2002 (in press).","","Thu Feb 7 16:58:16 2002","","1","","","PG1823" "PG1593","1919523","1918249","1275","ATGGAAATTGCAAAGATTATTGGCAGGGAGATCCTCGATTCCAGAGGCAATCCGACGGTTGAGGTAGATGTACACCTGGCCTGTGGCATAATAGGACGCGCGGCTGTACCCAGCGGAGCTTCCACCGGTGAGAATGAGGCTATCGAGCTTCGCGATCAGGATAAGGCTCGCTACTGTGGCAAAGGTGTCCTCAAGGCTGTGAAGAACGTAAATGAAGTGATAGATCCCGCACTCTGCGGAATGTCTGTATTGGAACAAACAGCTATTGACCGCAAGCTCATCGAATTGGATGGCACCAAAACGAAAAGCAACCTCGGAGCAAATGCCATGCTGGGCGTATCACTGGCCGTAGCCAAAGCAGCTGCAGCTTATTTGGATATTCCTCTCTACCGATATATCGGCGGTTCGAACACCTATGTCCTGCCTGTTCCTATGATGAATATCATCAACGGCGGTTCTCACTCGGACGCTCCTATCGCATTCCAGGAGTTCATGATCCGCCCTGTGGGAGCATGCTGCTTCCGTGAGGGCTTGCGCATGGGTGCCGAAGTTTTCCATGCACTCAAAAAGGTGCTTCACGATCGTGGTCTGAGTACTGCAGTCGGGGATGAAGGAGGTTTTGCTCCTGCCCTGAATGGTACGGAAGATGCTATCGAATCAATCCTCAAGGCTGTGGAAGCTGCCGGATACGTGCCCGGTAAGGATATTACCATCGCAATGGACTGCGCCTCTTCCGAGTTCTTCAAGGATGGTATTTACGACTACACTAAGTTCGAAGGCGAAAAGGGCAAGAAACGCTCTATCGATGAGCAGGTGGCTTATCTGACCGAACTGGTTGGCAAGTATCCCATCGATTCTATCGAAGACGGTATGAGCGAAAATGACTGGGAAGGATGGAAGAAGCTGACCGTAGCTTTGGGAGATAAGGTTCAGCTCGTCGGCGACGATCTCTTCGTTACCAACGTGGAATTCCTTCGCCGTGGTATCGCCGAGAAGTGCGGCAACTCCATCCTTATCAAGGTAAACCAGATTGGTACGCTCACAGAGACCCTGAATGCCATCGAGATGGCACACCGTCACGGCTTTACCAGCGTTACTTCGCACCGCTCCGGAGAGACAGAAGACACCACTATCGCAGACATTGCTGTAGCAACCAACTCGGGACAGATCAAGACGGGATCGCTCAGTCGTACCGACCGTATGGCTAAGTACAACCAACTGCTCCGCATCGAAGAGGAGTTAGGCCCTTGCGCTGTATACGGCTACAAGAAAGTG","5.10","-10.65","45810","MEIAKIIGREILDSRGNPTVEVDVHLACGIIGRAAVPSGASTGENEAIELRDQDKARYCGKGVLKAVKNVNEVIDPALCGMSVLEQTAIDRKLIELDGTKTKSNLGANAMLGVSLAVAKAAAAYLDIPLYRYIGGSNTYVLPVPMMNIINGGSHSDAPIAFQEFMIRPVGACCFREGLRMGAEVFHALKKVLHDRGLSTAVGDEGGFAPALNGTEDAIESILKAVEAAGYVPGKDITIAMDCASSEFFKDGIYDYTKFEGEKGKKRSIDEQVAYLTELVGKYPIDSIEDGMSENDWEGWKKLTVALGDKVQLVGDDLFVTNVEFLRRGIAEKCGNSILIKVNQIGTLTETLNAIEMAHRHGFTSVTSHRSGETEDTTIADIAVATNSGQIKTGSLSRTDRMAKYNQLLRIEEELGPCAVYGYKKV","","From Prosite PDOC00148: Enolase (EC 4.2.1.11) is a glycolytic enzyme thatcatalyzes the dehydration of 2-phospho-D-glycerateto phosphoenolpyruvate. It is a dimeric enzymethat requires magnesium both for catalysis andstabilizing the dimer. Enolase is probably foundin all organisms that metabolize sugars. Invertebrates, there are three differenttissue-specific isozymes: alpha present in mosttissues, beta in muscles and gamma found only innervous tissues. Tau-crystallin, one of the major lens proteins insome fish, reptiles and birds, has been shown tobe evolutionary related to enolase.TIGR ID: PG1824","enolase (phosphopyruvate hydratase)(2-phosphoglycerate dehydratase) (laminin binding protein)","Cytoplasm","This sequence is similar to CT587 of Chlamydia trachomatis.Numerous significant hits to enolase proteins in gapped BLAST; e.g. residues 3-420 are 67% similar to dbj|BAA81815.1| enolase of Streptococcus intermedius, residues 3-420 are 67% similar to gb|AAC17130.1| enolase of Staphylococcus aureus, residues 3-420 are 68% similar to gb|AAK04742.1|AE006297_5 enolase of Lactococcus lactis subsp. lactis, residues 3-420 are 64% similar to emb|CAB94910.1| enolase of Enterococcus faecalis.This sequence is similar to BT4572.","
InterPro
IPR000941
Family
Enolase
PD000902\"[144-424]TEnolase
PR00148\"[36-50]T\"[106-122]T\"[160-173]T\"[314-325]T\"[337-351]T\"[366-383]TENOLASE
PTHR11902\"[1-209]TEnolase
PF00113\"[138-420]TEnolase_C
PF03952\"[2-133]TEnolase_N
TIGR01060\"[3-424]Teno
PS00164\"[337-350]TENOLASE
noIPR
unintegrated
unintegrated
G3DSA:3.20.20.120\"[127-423]TG3DSA:3.20.20.120
G3DSA:3.30.390.10\"[2-126]TG3DSA:3.30.390.10
PIRSF001400\"[1-424]TEnolase
SSF51604\"[137-422]TSSF51604
SSF54826\"[1-139]TSSF54826


","No hit to the COGs database.","***** IPB000941 (Enolase) with a combined E-value of 5.1e-170. IPB000941A 33-54 IPB000941B 90-134 IPB000941C 141-193 IPB000941D 198-229 IPB000941E 235-248 IPB000941F 282-299 IPB000941G 310-344 IPB000941H 377-415","Residues 3-420 are 67% similar to a (ENOLASE LYASE GLYCOLYSIS MAGNESIUM) protein domain (PD000902) which is seen in ENO_STAAU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","Mon Mar 26 09:24:17 MST 2001","Mon Jan 5 15:05:34 2004","Thu Mar 22 10:48:17 MST 2001","Mon Jan 5 15:05:34 2004","Thu Mar 22 10:47:02 MST 2001","Thu Mar 22 10:47:02 MST 2001","Thu Mar 22 10:47:02 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 22 10:47:02 MST 2001","-78% similar to PDB:1W6T CRYSTAL STRUCTURE OF OCTAMERIC ENOLASE FROM STREPTOCOCCUS PNEUMONIAE (E_value = 5.5E_161);-76% similar to PDB:1IYX Crystal structure of enolase from Enterococcus hirae (E_value = 3.7E_149);-72% similar to PDB:1E9I ENOLASE FROM E.COLI (E_value = 6.3E_133);-72% similar to PDB:2FYM Crystal structure of E. coli enolase complexed with the minimal binding segment of RNase E. (E_value = 6.3E_133);-69% similar to PDB:1TE6 Crystal Structure of Human Neuron Specific Enolase at 1.8 angstrom (E_value = 1.8E_111);","","","Residues 2 to 133 (E-value = 9.5e-66) place PG1593 in the Enolase_N family which is described as Enolase, N-terminal domain (PF03952)Residues 138 to 425 (E-value = 9.4e-159) place PG1593 in the Enolase_C family which is described as Enolase, C-terminal TIM barrel domain (PF00113)","Mon Jan 5 15:05:34 2004","34541443","","","","","","1","","","PG1824" "PG1594","1920158","1919742","417","ATGAAAAGAAACCATCTTCAGAAAAGGCGGCAACCTGCTCGCAAAGGGTTTGTGGATAAGCTCCCGACCACCCTGGCGGACATATCGTACTATGCCTCCTACTATCAAGAAAATGCTCTGGTGAACAAGGTGCTGAAATGCTGCAGGCTAATCGGCCGCTTCGGTACCGGACAAGTGCTGACTCTGTATTATATGCTACAGGCGGGGGAGATAACAATGAAAGAAAAACTGCTCCTTGCCGGAGCACTTGGCTACTTCCTCCTTCCCTTCGACCTGATTCCCGATATCGCACTGCCCCTGATAGGATTTACAGACGATTTGGCTGTTACTTCCATCGTATTGAGGATCTTACATCGACGCATCACTCCGGCTATTCGAGAGAAAGCTCGTTCGCGTGCTGCCACCATCTTTGAAGAT","10.60","9.37","15800","MKRNHLQKRRQPARKGFVDKLPTTLADISYYASYYQENALVNKVLKCCRLIGRFGTGQVLTLYYMLQAGEITMKEKLLLAGALGYFLLPFDLIPDIALPLIGFTDDLAVTSIVLRILHRRITPAIREKARSRAATIFED","1920158 1919742","TIGR ID: PG1826","hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR010652
Family
Protein of unknown function DUF1232
PF06803\"[63-121]TDUF1232


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","-46% similar to PDB:1N6U NMR structure of the interferon-binding ectodomain of the human interferon receptor (E_value = );-46% similar to PDB:1N6V Average structure of the interferon-binding ectodomain of the human type I interferon receptor (E_value = );-46% similar to PDB:2HYM NMR based Docking Model of the Complex between the Human Type I Interferon Receptor and Human Interferon alpha-2 (E_value = );","","","Residues 63 to 121 (E-value = 2.7e-16) place PG1594 in the DUF1232 family which is described as Protein of unknown function (DUF1232) (PF06803)","","34541445","","","","","","1","","","PG1826" "PG1595","1920157","1920795","639","ATGTCATTGATGCCGTCTATTATGCTTAATACGCTGTTTATTAGGGTTTCTCACCTATTCGATTATCTTTGTGTCTGTGGCAGGAGGGAACGAATCTTCCAACCATTGGCTTCAACAACAACAAAGAAACAGCTTATTATGAATAGTGTGCAATTTCGCGAAAAACTTCTGAGTCTGCAAGACAATATGCGCAATTTTGCCCTGACTCTGACTGCCAATCGGGATGATGCAGAGGATTTGCTCCAAGATACAACTCTCCGTGTGCTTCATAACGAGGACAAGTTCGTTGATAATGTCAACTTCAAAGGCTGGGTGCTCACTGTCATGCGAAATATCTTCATCAACAACTATCATAAGTTGGTTCGCTCACAAACGGTTATCGATCCCAACAGCGATCCGTACAATGTACCTCTCCTGAATGAGGGAGGAGAGGATACGCCCGATGGCACTATGACCATCAAAGAGATAACGGCGGCCATTGCATCGCTGAATGAGACTCTCAAGCAGCCATTCTCCATGTACGTGAGCGGATATAAATACAATGAAATATCCGAGACTCTTGGAATCCCTCTCGGCACGGTGAAGAGCCGTATATTTCTTGCCAGACAGGAACTCCAGCAGCAACTCAAGGACATGAGA","7.40","0.63","24499","MSLMPSIMLNTLFIRVSHLFDYLCVCGRRERIFQPLASTTTKKQLIMNSVQFREKLLSLQDNMRNFALTLTANRDDAEDLLQDTTLRVLHNEDKFVDNVNFKGWVLTVMRNIFINNYHKLVRSQTVIDPNSDPYNVPLLNEGGEDTPDGTMTIKEITAAIASLNETLKQPFSMYVSGYKYNEISETLGIPLGTVKSRIFLARQELQQQLKDMR","1920157 1920795","TIGR ID: PG1827","RNA polymerase sigma factor (possible ECF sigma factor)","Periplasm, Cytoplasm","Several significant hits and numerous weak hits to sigma factor proteins in gapped BLAST; e.g. residues 51-211 are 31% similar to gb|AAC98488.1| putative ECF sigma factor of Myxococcus xanthus, residues 34-212 are 30% similar to pir||H70596 probable RNA polymerase sigma factor of Mycobacterium tuberculosis(strain H37RV), residues 34-211 are 26% similar to emb|CAB94601.1| RNA polymerase sigma factor of Streptomyces coelicolor A3(2). ","
InterPro
IPR007627
Domain
RNA polymerase sigma-70 region 2
PF04542\"[56-123]TSigma70_r2
InterPro
IPR013249
Domain
RNA polymerase sigma factor 70, region 4 type 2
PF08281\"[153-205]TSigma70_r4_2
InterPro
IPR013324
Domain
RNA polymerase sigma factor, regions 3 and 4
SSF88659\"[145-211]TSigma_r3_r4
InterPro
IPR013325
Domain
RNA polymerase sigma factor, region 2
SSF88946\"[52-141]TSigma_r2
InterPro
IPR014284
Domain
RNA polymerase sigma-70
TIGR02937\"[51-209]Tsigma70-ECF
noIPR
unintegrated
unintegrated
G3DSA:1.10.1740.10\"[39-122]TG3DSA:1.10.1740.10


","BeTs to 6 clades of COG1595COG name: Specialized sigma subunits of RNA polymeraseFunctional Class: KThe phylogenetic pattern of COG1595 is ------VCEBRH-----l---Number of proteins in this genome belonging to this COG is 6","***** IPB000838 (Sigma factor, ECF subfamily) with a combined E-value of 3.9e-15. IPB000838A 79-115 IPB000838B 159-205","Residues 61-211 are 31% similar to a (FACTOR SIGMA RNA POLYMERASE) protein domain (PD001205) which is seen in O68520_MYXXA.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Jun 5 10:29:52 MDT 2001","Thu Mar 22 11:10:27 MST 2001","Mon Mar 5 16:45:10 MST 2001","Mon Mar 5 16:45:10 MST 2001","Mon Mar 5 16:45:10 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 72-209 have 24% similarity to PG0148, a possible RNA polymerase sigma factor/ECF subfamily (sigma-70). ","Tue Jun 5 10:29:52 MDT 2001","Mon Mar 5 16:45:10 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 56 to 123 (E-value = 1.8e-08) place PG1595 in the Sigma70_r2 family which is described as Sigma-70 region 2 (PF04542)Residues 159 to 207 (E-value = 1.7e-08) place PG1595 in the Sigma70_r4 family which is described as Sigma-70, region 4 (PF04545)","Thu Mar 22 11:10:27 MST 2001","34541446","","","","","","1","","","PG1827" "PG1596","1923073","1921403","1671","ATGATCGAACAGAATTTCATCCGACTTTATCAAGATAGCTTTCGGGAGCATTGGGCACTCCCGGCACTCACTAACTACGACACGAAAGAGAGCTACACCTACGGAGAGATGGCTGCCGATATTGCTCGCCGACATTTGCTCTTCGAGCGCATCGGACTTAAGCCGGGAGACAAGGTGGCACTGCTCGGCAAAGACTCTGCCGAATGGTGTATGGCTTTCATGTCCGTCATCACGTATGGAGCCATCATCGTTCCTGTCTTACCCGATTTCAATGCAGCCGATGCAGCAAGTATAGTGACGCATTCCGATGCCAAGTATCTCTTCGTATCGGACAAAATATGGGAGACGATGGATCCGTCTCAGCTCCTTCTCCTGTGCGGAGCCGTCTCTATCCGTGATTATACGGTCTTCCTGGATCGTACGGAGGGTGGCTTGCTCAGCCAGGAAGTAGAAGGATTGAGTCGCTCTTTCTCCGAACACTACCCTTCCGGCTTCACGGCAGAGGATATTCGCTATGCCGAGGTGTCGAACGACGATCTCATCCTGCTGAACTATACCTCCGGTACGACCGGATTCAGTAAGGGGGTTATGCTTCGTGCCAACAATCTGGCCGGCAATGTAACCTACGTTAAGGATAGAGACATTATGTTCCGAGGCGAGACGATCCTTTGCTTCCTTCCATTGGCCCATACTTATAGCTGTGCGTTCAACTTCCTTACGCCATTGACTATAGGTGTGCATGTGTATATCTTGGGCAAAATCCCCTCTCCTCTCACTCTGATCAAAGCCTTTGCAGATGTACGCCCCTCATTTGTCATCATGGTGCCTCTCATCATAGAGAAATTGTATCACAAGGCAATAGCTCCGAAAATCAAGACACCGTTAATCAAATTCCTGCTAAGACTTCCTGTGCTGAAAAAGGTGATACACAAATCGATCCGGAGCAAGCTGATCGAATCCTTCGGAGGTAATTTCCGACAAATCATCATTGGAGGAGCTGCTCTCAACGATGAAGTAGCTCATTTCCTCTATCGGATAGGATTTCCGCTGACCGTCGGTTACGGCATGACGGAGTGCGGCCCCCTCATTAGCTATGAGGATCACAGCCTGTGGCTACCCGGCAGCTGTGGCAAATCGCTCTCTATTATGGAGGTACGAATCGATCATTCGGGACAGGAAAGGCATAGCGACAGCGGCGATGTGGGAGAGATTCAGGTTCGTGGGGAGAACGTCTGTCTCGGCTATTATAAGAATGCCGAACTGACAGCCGAGCTTTTTACTCCCGATGGGTGGATGCGTACAGGTGATCTTGGCACCATAGATAGCTTGGGAAATATCTTTATCAAAGGGCGGTCCAAGACCATGCTCCTCGGATCAAACGGACAGAATATCTATCCCGAAGAAATAGAATCGAAGATCAACAATCTATCCTATGTCCTCGAAAGTATCGTCACAGAGCGAGACGGACGCTTGATCGCACTAATCGTGCCGGACAGACAGGCGATAGAGCATAAAGGGATCTCTCCGGATCAGGCATGGGCTTATATCGAAAGGAGCCGAGCCGAACTGAACGGGCAAGTGGGTGCATACGAGAAAATAACGGCCTTTGTCCGCCATGACGAAGAGTTCGAGAAGACACCCAAACACAGCATCAAACGTTTCCTCTATACT","6.40","-5.67","62403","MIEQNFIRLYQDSFREHWALPALTNYDTKESYTYGEMAADIARRHLLFERIGLKPGDKVALLGKDSAEWCMAFMSVITYGAIIVPVLPDFNAADAASIVTHSDAKYLFVSDKIWETMDPSQLLLLCGAVSIRDYTVFLDRTEGGLLSQEVEGLSRSFSEHYPSGFTAEDIRYAEVSNDDLILLNYTSGTTGFSKGVMLRANNLAGNVTYVKDRDIMFRGETILCFLPLAHTYSCAFNFLTPLTIGVHVYILGKIPSPLTLIKAFADVRPSFVIMVPLIIEKLYHKAIAPKIKTPLIKFLLRLPVLKKVIHKSIRSKLIESFGGNFRQIIIGGAALNDEVAHFLYRIGFPLTVGYGMTECGPLISYEDHSLWLPGSCGKSLSIMEVRIDHSGQERHSDSGDVGEIQVRGENVCLGYYKNAELTAELFTPDGWMRTGDLGTIDSLGNIFIKGRSKTMLLGSNGQNIYPEEIESKINNLSYVLESIVTERDGRLIALIVPDRQAIEHKGISPDQAWAYIERSRAELNGQVGAYEKITAFVRHDEEFEKTPKHSIKRFLYT","1923166 1921403","TIGR ID: PG1829","long-chain-fatty-acid-CoA ligase (probable polyketide synthetase)","Cytoplasm, Inner membrane","PG1596 is weakly similar to CT776, a predicted 2-acylglycerophosphoethanolamine acyltransferase from Chlamydia trachomatis.Numerous significant hits to long-chain-fatty-acid CoA ligase proteins in gapped BLAST; e.g. residues 33-555 are 30% similar to gb|AAC07072.1| long-chain-fatty-acid CoA ligase of Aquifex aeolicus, residues 32-553 are 27% similar to gb|AAF95626.1| long-chain-fatty-acid--CoA ligase, putative of Vibrio cholerae, residues 44-503 are 30% similar to gb|AAC21681.1| long chain fatty acid coA ligase, putative of Haemophilus influenzae Rd.This sequence is similar to BT2154.","
InterPro
IPR000873
Domain
AMP-dependent synthetase and ligase
PR00154\"[178-189]T\"[190-198]TAMPBINDING
PF00501\"[33-484]TAMP-binding
PS00455\"[183-194]?AMP_BINDING
noIPR
unintegrated
unintegrated
G3DSA:2.30.38.10\"[373-448]TG3DSA:2.30.38.10
G3DSA:3.40.50.980\"[3-198]T\"[199-369]TG3DSA:3.40.50.980
PTHR11968\"[5-290]T\"[321-556]TPTHR11968
PTHR11968:SF23\"[5-290]T\"[321-556]TPTHR11968:SF23
SSF56801\"[5-553]TSSF56801


","BeTs to 8 clades of COG1022COG name: Long-chain acyl-CoA synthetases (AMP-forming)Functional Class: IThe phylogenetic pattern of COG1022 is a---Yq-c--Rh----Ol---Number of proteins in this genome belonging to this COG is 2","***** IPB000873 (AMP-binding domain) with a combined E-value of 5.9e-06. IPB000873 179-196","Residues 178-254 are 41% similar to a (LIGASE SYNTHETASE PROTEIN ENZYME) protein domain (PD000070) which is seen in O67119_AQUAE.Residues 402-438 are 62% similar to a (LIGASE SYNTHETASE PROTEIN ENZYME) protein domain (PD000107) which is seen in Q21872_CAEEL.","","Thu Jun 14 12:17:32 MDT 2001","","Thu Jun 14 12:17:32 MDT 2001","Thu Jun 14 12:17:32 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:17:32 MDT 2001","Thu Jun 14 12:17:32 MDT 2001","","Thu Apr 6 13:38:36 MDT 2000","Thu Mar 22 12:52:06 MST 2001","Wed Dec 10 16:53:14 2003","Thu Mar 22 11:19:13 MST 2001","Tue Jun 26 09:01:40 MDT 2001","Tue Jun 26 09:01:40 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 33-533 are 25% similar to PG1028, a probable long-chain fatty-acid-Coenzyme A ligase (long-chain acyl-CoA synthetase).","Tue Jun 26 09:01:40 MDT 2001","Thu Mar 22 11:19:13 MST 2001","-42% similar to PDB:1ULT Crystal structure of tt0168 from Thermus thermophilus HB8 (E_value = 2.1E_25);-42% similar to PDB:1V25 Crystal structure of tt0168 from Thermus thermophilus HB8 (E_value = 2.1E_25);-42% similar to PDB:1V26 Crystal structure of tt0168 from Thermus thermophilus HB8 (E_value = 2.1E_25);-40% similar to PDB:2D1Q Crystal structure of the thermostable Japanese Firefly Luciferase complexed with MgATP (E_value = 2.5E_23);-40% similar to PDB:2D1R Crystal structure of the thermostable Japanese firefly Luciferase complexed with OXYLUCIFERIN and AMP (E_value = 2.5E_23);","","","Residues 33 to 484 (E-value = 3.9e-84) place PG1596 in the AMP-binding family which is described as AMP-binding enzyme (PF00501)","Tue Jun 26 09:01:40 MDT 2001","34541448","","","","","","1","","","PG1829" "PG1597","1925515","1923551","1965","ATGCCGGAGGAGGTTTCCAATGAGATCGAAGCTCCGTCTCTGCATACGCCGGAGGAGGTTTTGCTACACTATTGGGGCTACCCTTCGTTCAGGCCTGTGCAGCTCCCGATCATCGAATCCGTTTTGGCAGGGAAGGACACATTGGGACTACTGCCCACGGGTGGTGGTAAGAGTATCACGTTCCAAGTCCCCGGGCTGCTACTGCCGGGTTTGACTCTCGTGGTAACGCCACTGATTGCTCTGATGCGGGACCAGATCATGGGATTGCGCCAAAAGGGGATCAAGGCGACAGCCGTTCATGCCGGAATGACGCGCGAGCAGATTATCACCACGCTGGACAACTGTATTTACGGCCGCTACAAATTTCTATACGTTTCGCCCGAACGTCTGGGCTCGGAACTTTTCCTCAGCCGTCTGCATGCTCTCAGGGTAAGTCTGCTGGTCGTAGACGAATGTCACTGTATATCCCAGTGGGGCTATGACTTCCGGCCGGCATACCTCTCGATAGCAGACATCAGGGAGGCCCTGCCGGATGTTCCCGTATTGGCATTGACTGCTACGGCTACACGGCCGGTGATCGACGACATACAACGCATCCTCCGATTTCCGGAGCCGAACGTGCTGAGAAAAAGCTTTTTCCGCCCCAATCTGTCGTATTCCATCCGCCGGACGGCAGACAAAGAGACGATGCTGCTGCATATCCTCAGTCGCGTGGACGGTTCGGCCGTCGTATACTGTCGCAACCGAGATAAGGCGCGCGATCTGGCACGCTTCCTCGGCGAAAACGGCTTCTCGGCCGATTTCTATCACGCCGGTCTCAACCATGTGACACGGGAAATACGGCAAAAAAGCTGGATGGAAGGGGAAACGCGGATCATCGTCTGCACCAATGCTTTCGGGATGGGGATCGACAAGCCCGATGTCCGATTGGTACTTCACATGGAAATGCCCTCTTCGCCGGAGGAGTATTTCCAAGAGGCCGGTCGCGCCGGTCGGGACGGAGAGAGGGCTTATGCCGTCTTACTGGCAGGGGAGGACGACATATTCAACCTGAAAAGGCGAGTGAGCAATGAGTTTCCTCCACGTGAATACATCGCCACGGTGTACAATCGGATTTGCAACTACCTGCAGATAGGAGAAGGAGAGGGATTCGAGCGATCTTTCGACTTCGACATCGATGCTTTTTGCCGGAATTTCAGGATGTTCCCAACACAAGTATTGGCTGCGATTCGCATCCTCGATGTAGCCGGGATTTGGGAGTATCGGGAGGAAAAGACGCGCTCGCGCCTGACAATACAGGTGCAGCGCGACGAGCTATACCGCATGAGAAGCGAACAGGCTTCCGACAGCGTGCTGACTGCCCTGATGAGGACATACGACGGGTTGTTTGCGGATTATGTTTCCATAGTGGAAAGCGAATTGGCCGAAAAGACAGGGCTTAGCGTCGATCAGGTCTATCAGCAACTCCTGCTTCTGAACAAAGCCGGCATAGTGAACTATATTCCACAAAAGAATCTGCCACGAATTTATTTTCTCACAAGACGTGAGGATGCAGAATTGCTCCAGATACCTCGTGCGGCTTACGAGGACCGTCGCGATCGGCTTAAAGCACGAATCGATCAGTCGCTCCGCTACATAGAGGAAGAAAACACCTGTCGCAGCCGCATGCTTCTGGCCTACTTCGGCGAGGAGCAGTCCCACAACTGCAAGCTATGCGACGTATGTCTAAGGAGAAAAGACGGAGAACTGCACCATCATGAAGTGGACGACTTGCTACATTTCCTCGAGCAACGTTTGACCGAAGAAACACCCTACGTACTGATTGCGGATATCTGCCGAGAACTGCATCACCATCCCGACGTCGTGCTCAAAGCAATACGCTTCGTCATGAAAGAATCCTGGCAGTACTCCACTGATGGTGATACCGTCTTCCTGACGCACAAACTTCCCGGAGGACTGAACCTT","6.30","-7.16","75307","MPEEVSNEIEAPSLHTPEEVLLHYWGYPSFRPVQLPIIESVLAGKDTLGLLPTGGGKSITFQVPGLLLPGLTLVVTPLIALMRDQIMGLRQKGIKATAVHAGMTREQIITTLDNCIYGRYKFLYVSPERLGSELFLSRLHALRVSLLVVDECHCISQWGYDFRPAYLSIADIREALPDVPVLALTATATRPVIDDIQRILRFPEPNVLRKSFFRPNLSYSIRRTADKETMLLHILSRVDGSAVVYCRNRDKARDLARFLGENGFSADFYHAGLNHVTREIRQKSWMEGETRIIVCTNAFGMGIDKPDVRLVLHMEMPSSPEEYFQEAGRAGRDGERAYAVLLAGEDDIFNLKRRVSNEFPPREYIATVYNRICNYLQIGEGEGFERSFDFDIDAFCRNFRMFPTQVLAAIRILDVAGIWEYREEKTRSRLTIQVQRDELYRMRSEQASDSVLTALMRTYDGLFADYVSIVESELAEKTGLSVDQVYQQLLLLNKAGIVNYIPQKNLPRIYFLTRREDAELLQIPRAAYEDRRDRLKARIDQSLRYIEEENTCRSRMLLAYFGEEQSHNCKLCDVCLRRKDGELHHHEVDDLLHFLEQRLTEETPYVLIADICRELHHHPDVVLKAIRFVMKESWQYSTDGDTVFLTHKLPGGLNL","1925671 1923551","TIGR ID: PG1831","ATP-dependent DNA helicase RecQ","Cytoplasm","Numerous significant hits to ATP-dependent DNA helicase (DNA-dependent ATPase, DNA helicase) in gapped BLAST; e.g. residues 68-412 and 600-628 have 40% and 64% similarity to AE004110, V. cholerae ATP-dependent DNA helicase RecQ, residues 70-405 and 600-628 have 40% and 51% similarity to M87049, E. coli DNA-dependent ATPase, DNA helicase, residues 70-407 have 38% similarity to Z99116, B. subtilis ATP-dependent DNA helicase. This sequence is similar to BT3938.","
InterPro
IPR001650
Domain
Helicase, C-terminal
PF00271\"[258-334]THelicase_C
SM00490\"[253-334]THELICc
PS51194\"[230-376]THELICASE_CTER
InterPro
IPR004589
Family
ATP-dependent DNA helicase RecQ
PTHR13710\"[5-370]T\"[539-581]TRecQ
TIGR00614\"[19-446]TrecQ_fam
InterPro
IPR011545
Domain
DEAD/DEAH box helicase, N-terminal
PF00270\"[31-196]TDEAD
InterPro
IPR014001
Domain
DEAD-like helicases, N-terminal
SM00487\"[26-222]TDEXDc
InterPro
IPR014021
Domain
Helicase superfamily 1 and 2 ATP-binding
PS51192\"[38-206]THELICASE_ATP_BIND_1
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[2-210]T\"[214-380]TG3DSA:3.40.50.300
PTHR13710:SF11\"[5-370]T\"[539-581]TPTHR13710:SF11
SSF46785\"[472-543]T\"[584-648]TSSF46785


","BeTs to 5 clades of COG0514COG name: Superfamily II DNA helicases, RecQ familyFunctional Class: LThe phylogenetic pattern of COG0514 is ----y--ceB-h-----l---Number of proteins in this genome belonging to this COG is 2","***** IPB000629 (ATP-dependent helicase, DEAD-box subfamily) with a combined E-value of 7.5e-19. IPB000629A 26-64 IPB000629D 180-208 IPB000629E 292-342***** PF00570 (HRDC domain) with a combined E-value of 4e-15. PF00570A 48-62 PF00570B 295-325***** BP01310 (HELICASE PROTEIN ATP-BINDI) with a combined E-value of 7e-14. BP01310A 264-310 BP01310B 321-334***** IPB002464 (ATP-dependent helicase, DEAH-box subfamily) with a combined E-value of 9.8e-07. IPB002464C 143-156 IPB002464D 296-306 IPB002464F 325-342","Residues 18-101 are 40% similar to a (HELICASE DNA ATP-BINDING PROTEIN) protein domain (PD100086) which is seen in RECQ_SYNY3.Residues 241-347 are 52% similar to a (HELICASE PROTEIN POLYPROTEIN ATP-BINDING RNA RNA-BINDING) protein domain (PD000033) which is seen in Q9ZHY4_NEIGO.Residues 119-221 are 45% similar to a (HELICASE PROTEIN ATP-BINDING DNA) protein domain (PD003883) which is seen in RECQ_BACSU.","","Thu Jun 14 12:17:56 MDT 2001","","Thu Jun 14 12:17:56 MDT 2001","Thu Jun 14 12:17:56 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:17:56 MDT 2001","Thu Jun 14 12:17:56 MDT 2001","","","Mon Mar 5 16:30:33 MST 2001","Sat Jan 3 10:21:04 2004","Mon Mar 5 16:30:33 MST 2001","Tue Jun 26 08:56:12 MDT 2001","Tue Jun 26 08:56:12 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 19-353 have 42% similarity to PG0381, a predicted ATP-dependent DNA helicase. Residues 14-347 have 24% similarity to PG1835, a predicted DEAD BOX-related helicase (ATP-dependent helicase). Residues 26-342 have 22% similarity to PG0074, a predicted DEAD BOX-related helicase.","Tue Jun 26 08:56:12 MDT 2001","Mon Mar 5 16:30:33 MST 2001","-58% similar to PDB:1OYW Structure of the RecQ Catalytic Core (E_value = 3.4E_67);-58% similar to PDB:1OYY Structure of the RecQ Catalytic Core bound to ATP-gamma-S (E_value = 3.4E_67);-42% similar to PDB:2HXY Crystal structure of human apo-eIF4AIII (E_value = 2.3E_15);-42% similar to PDB:2HYI Structure of the human exon junction complex with a trapped DEAD-box helicase bound to RNA (E_value = 2.3E_15);-42% similar to PDB:2J0Q THE CRYSTAL STRUCTURE OF THE EXON JUNCTION COMPLEX AT 3.2 A RESOLUTION (E_value = 2.3E_15);","","","Residues 20 to 222 (E-value = 5e-36) place PG1597 in the DEAD family which is described as DEAD/DEAH box helicase (PF00270)Residues 258 to 334 (E-value = 4.8e-26) place PG1597 in the Helicase_C family which is described as Helicase conserved C-terminal domain (PF00271)","Sat Jan 3 10:21:04 2004","34541449","","","","","","1","","","PG1831" "PG1597.1","1926076","1925720","357","ATGAGAGGATTAAGCCAAAAGATCCGACAAGATGGGAAAAGAAATAGCCGAAGAAGAACCGGCTGGGGATCGCCACCTTTTCACGAGCCAAAAAACGGCGACTCACCGGCCCTAAAAATGCGGCGCGTAAAAGTTTTCCTTTTGGTGCGAGAAAAGAAAAATTTACGCGCCACAACGAAAAAAATCTCGCGTCACTTTTCCCAAAAACACGAACCGCAATCGCAGCTTTTGCGGTTCCGGAATTGTCGGAGATCGGCTGAGGTTCGAGACAGACGGTTGGGCGTATTATTCGTACTTTCGTGTATGATTTTCACACGCTGCACCGGATTATTATCCGGGGTTAGTCCACAGGCTGTC","","","13799","MRGLSQKIRQDGKRNSRRRTGWGSPPFHEPKNGDSPALKMRRVKVFLLVREKKNLRATTKKISRHFSQKHEPQSQLLRFRNCRRSAEVRDRRLGVLFVLSCMIFTRCTGLLSGVSPQAV","","NO TIGR ID corresponds to this gene.","hypothetical protein","Periplasm, Cytoplasm","No hit found in gapped BLAST.","
InterPro
IPR012456
Family
Protein of unknown function DUF1661
PF07877\"[48-78]TDUF1661
noIPR
unintegrated
unintegrated
tmhmm\"[93-113]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Mon Mar 5 16:50:42 MST 2001","","Mon Mar 5 16:50:42 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No significant paralogs found using local BLAST search.","Mon Mar 5 16:50:42 MST 2001","Mon Mar 5 16:50:42 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Mar 5 16:50:42 MST 2001","","","","","","","1","","","" "PG1598","1926298","1927110","813","ATGGATTCCAAAAAAATTCTTTACATATCCCAAGAAATTTTCCCCTACTTGCCGGAAACGGACATATCGGTCGTTTCGCGCAAATTGCCTCAGACCATTCAGGAGCGAGGCAACGAGGTGCGCATTTTTATGCCCCGCTATGGCATCATCAATGAGCGTCGCAATCAGTTGCACGAGGTGATACGCCTTTCCGGCATCAATATGATCATTAACGACAACGACCATCCGTTGATCATCAAAGTGGCTTCCATCCAGTCGGCCCGCATGCAGGTTTATTTCATCGACAATGATGATTTCTTCAAGCGCAAGACGATGTACGACATCAAGCCCAAGCAGGAGAATGACAACGATGAGCGAGCCATCTTTTTTGTGCGCGGAGCACTCGAAGCGATCAAGAAACTGCGTTGGATCCCCGATGTCATCCATTGTCATGGCTGGTTCACGGCGTTGGCTGCCTTGTATCTGAAGAAGATGTATGCGGACGATCCTTGCCTGCAAAAAGCAAAAGTGGTCTACTCCGTCTACGATGATGCCGGACAGGGAGTGATCCCGGAGACCCTCTTCGGTAAGCTCGGATTCGACAAGATCACGCCCGATGACCTGTCCGTAATGGAGCAGTCGTCCGACTATTTGGCCTTGAACCGTCTGGCCATCCGATATGCCGACGGTGTCATTCAGGGATCGGAGACCATAGCACCGGAGCTGACCGACTATATATCCTCTTTGGAGGGGAAGGCTTTCCTCCCATACCAAGGGAAAGAGGACTATGAAGAAGCTTTCGATAACTTCTATAGCGATCTTTTGACGGCCAAC","4.90","-8.12","31217","MDSKKILYISQEIFPYLPETDISVVSRKLPQTIQERGNEVRIFMPRYGIINERRNQLHEVIRLSGINMIINDNDHPLIIKVASIQSARMQVYFIDNDDFFKRKTMYDIKPKQENDNDERAIFFVRGALEAIKKLRWIPDVIHCHGWFTALAALYLKKMYADDPCLQKAKVVYSVYDDAGQGVIPETLFGKLGFDKITPDDLSVMEQSSDYLALNRLAIRYADGVIQGSETIAPELTDYISSLEGKAFLPYQGKEDYEEAFDNFYSDLLTAN","1926244 1927110 [Shorter 2073 807 99]","TIGR ID: PG1834","glycogen synthase","Cytoplasm","A few significant hits to glycogen synthase in gapped BLAST; e.g.residues 5-244 have 26% similarity to AE001754, T. maritima glycogen synthase, residues 5-191 have 26% similarity to D87026, B. stearothermophilus bacterial glycogen synthase, residues 5-254 have 25% similarity to AF008220, B. subtilis starch synthase.","
InterPro
IPR013534
Domain
Starch synthase catalytic region
PF08323\"[5-241]TGlyco_transf_5
noIPR
unintegrated
unintegrated
PTHR12526\"[5-75]T\"[114-236]TPTHR12526
PTHR12526:SF17\"[5-75]T\"[114-236]TPTHR12526:SF17
SSF53756\"[1-238]TSSF53756


","BeTs to 5 clades of COG0297COG name: Glycogen synthaseFunctional Class: GThe phylogenetic pattern of COG0297 is -m-k-qvCeb-h------in-Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 5-191 are 25% similar to a (SYNTHASE STARCH GLYCOGEN TRANSFERASE GLYCOSYLTRANSFERASE) protein domain (PD002219) which is seen in GLGA_BACST.","","Thu Jun 14 12:18:10 MDT 2001","","Thu Jun 14 12:18:10 MDT 2001","Thu Jun 14 12:18:10 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:18:10 MDT 2001","Thu Jun 14 12:18:10 MDT 2001","","","Mon Mar 5 16:59:52 MST 2001","Tue Jun 26 08:54:09 MDT 2001","Mon Mar 5 16:59:52 MST 2001","","Tue Jun 26 08:54:09 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Mar 5 16:59:52 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Jun 26 08:54:09 MDT 2001","34541450","","","","","","1","","","PG1834" "PG1600","1927216","1928580","1365","ATGAAGAGATACCTTCTTCTTGTTTTTTCGTTAATGGCTCTCCTCACGGTAGCCTGCGATGATGATCTGTCTCCGATCGGAGGTTCTATCCAGCCTCCTTCGGATCCGGTTTCGGCCAGAGTGGATACGCTCGAATTTTCTGTCAAGACGATACCGATGGGCGATATTTACAACCGAACGAACTATACGCTGCTGGGAGATCTGACGGATCCCGAATATGGCGACTTGAAGGCTGACTACATCATGCAGTTCAAGAGTCCGAGGAATTTCAAATTCAAGTATCCGCCCAAAGATGGGAAGATCGACTCCGTGAAGCTCAGTATCAACTATGACAGTTGGGCGGGGGACTCCACGTCTATCATGAAGGTTTCGATCTATAAAATCAACAAAGCCATTCCTCCCTCATACTACTCCACACAGGAATTGGCCTCCCTGCTGGACGAAACGCAGATCATAGCCTCGCAAACATTCAAGGCTGGCAACGACTCGGCATTCCACCGCGTAAGAATTCCCTTGCCCAATGAGATCGGCCAAAAGATATACGATCTCTCGGTAAACAACCCAAGTGTTTTCGATACGCAGGAGAGCTTCTATAATAATGTGTTGGGCGGTCTGTATGTGACTACGACGACGGGTACGGGAGTTGTGCTCAGCGTGTACAATACGCAGATGGCCATCTTCTATAGCTACAAGGTTACGGCCGATTCCACCACAACAGCTACAGAGACATTCGTAAACACGAGCGAATCCTATCAGGTCAATCATATCAAGAACTCCCAAATATCCCACCTGTTGCAGGAGAATGATTCTCTCACTTGTGTGAAGAGTCCGGCAGGGGTGATGACGCAACTGACAATCAGTAAAGAGCAGTTTACGGATGCTTTCACGAGCAATCTGTCTTCCTCTTTGGCTTGGCAAATCGGTGAAGCACAGTTCAATATCAGTGCTTCGAAGCCATCTGAGGGCTTGATGCTGAGTCCGCCCTCCTACTTGTTGCTCTTGCCGCAGGATTCGGTGAGAAACTTCTTCGAGCAAGAACAGACCGAGCTGATGCAGCCTCGCACGGCATTCCTATCGACCATATACAACATTAAGAAACGGGAGTATCGGTTTAGCAATATCAGTCGCCTGCTGATGGAGCATATCAAGAACAATACGGAGAAGACTCCCGAGGGCAAGCCTTATATCACCAAGGACCTTGTTCTCGTACTGCTGCCTGTGAAGCGTCAGGTTGCGGGAGCTTCCAATTCGCTGTACACCTCCCAGCTGAATAATTTCATGTTCCCGTCCGGCGTCAAACTACAGCTCGGAAAAAAAAATAAGACGGCGCGTATCGGCGTTTACAGTATGACTTATACCGACAAC","7.50","0.88","50913","MKRYLLLVFSLMALLTVACDDDLSPIGGSIQPPSDPVSARVDTLEFSVKTIPMGDIYNRTNYTLLGDLTDPEYGDLKADYIMQFKSPRNFKFKYPPKDGKIDSVKLSINYDSWAGDSTSIMKVSIYKINKAIPPSYYSTQELASLLDETQIIASQTFKAGNDSAFHRVRIPLPNEIGQKIYDLSVNNPSVFDTQESFYNNVLGGLYVTTTTGTGVVLSVYNTQMAIFYSYKVTADSTTTATETFVNTSESYQVNHIKNSQISHLLQENDSLTCVKSPAGVMTQLTISKEQFTDAFTSNLSSSLAWQIGEAQFNISASKPSEGLMLSPPSYLLLLPQDSVRNFFEQEQTELMQPRTAFLSTIYNIKKREYRFSNISRLLMEHIKNNTEKTPEGKPYITKDLVLVLLPVKRQVAGASNSLYTSQLNNFMFPSGVKLQLGKKNKTARIGVYSMTYTDN","1927216 1928580","TIGR ID: PG1835","possible lipoprotein","Outer membrane, Periplasm","This sequence corresponds to gi:34397768 in Genbank.Its nearest neighbor in the NR database is gi:53712293 from Bacteroides fragilis YCH46","
noIPR
unintegrated
unintegrated
PS51257\"[1-19]TPROKAR_LIPOPROTEIN


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Mar 8 15:41:58 2005","Tue Mar 8 15:41:58 2005","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 8 15:41:58 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541451","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Tue Mar 8 15:41:58 2005","","1","","","PG1835" "PG1601","1928686","1929918","1233","ATGATGAAGCAATTGAAATATCGTCTGATCCTGATGAACTTCCTGCAGTTTTTCATTTGGGGAGCTTGGCTGATTTCCCTTGGTGGATATATGGCGAGCGTACTGCATTATTCCGGTTTGGAAATAGGTGCCATATACGGTACGATGGGCATTGCCTCTCTTTTCATGCCGGGTTTGCTGGGTATTCTGGCGGACAAGTACGTGGCTGCACAAAAGCTCTTGGGAGCGTGCCATCTGATCGGAGCCATATTGCTGGTTTATGCTTCCACGCTGAGTAGTTACTCCGTTTTTTATCCCGTTATGCTCCTGCTCTGCATGAGCTATATGCCTACCCTCGCTCTCACCAATACGATAGCCTATACTGCTATGGAGAAAGCCGGTATGGATATAGTGCGCGAATTTCCTCCTATACGCGTATGGGGTACTGTCGGCTTCATTTTGGCCATGTGGACCGTCGATATATGCGGATGGGTAATGAGCAGTATGCAATTCTATGTCAGTGCGGTGGCTTCCCTTGCATTGGGATTGTATGCTTTTACCTTGCCTCACTGCCCTCCTGCAAAAGAAAACAAGAAGAAGGGGGTGCTTGCCGTCTTGGGGCTGGATGCTTTTGTCCTTTTCCGCCAACGTCGTATGGCTATCTTCTTCCTCTTTGCCATGCTATTGGGAGCAGCCCTTCAGGTCACCAATACATTCGGCAATCCGTTTTTGTCTCATTTTGCGGATGCTTATAGCGAGAGCTTTGCCGTTCAGCACCCCAATGTGTTGCTTTCTTTGTCGCAGATTTCCGAGACTCTTTTCATTTTGACCATTCCGTTTTTCATGGGGCGCTTCGGGATCAAACGGGTGATGCTTATGAGTATGTTGGCTTGGGTGTTGCGTTTCGCTTTCTTTGGTCTCGGCAATCCGGGTAGCGGCTTCATTTTCCTCGTTCTGTCGATGATCGTATATGGTATGGCCTTCGATTTCTTCAATATCAGCGGTTCCATGTTTGTCGATCGAGAGACTACACCATCGATTCGGGCAGCTGCTCAAGGCCTTTTTATGATAATGACCAATGGTATCGGAGCTATCATCGGCGGATTTGCCAGCGGTTGGGTGGTAGATCGCTTTACGGATGCCGGTCATACGGCTTGGAGCACGGTATGGTATATTTTCGCAGCTTATGCATTGGTCATCGCCATCCTCTTTGCTTTCTTTTTCAAGTCGGAAAGCAGTCCCCTCTCTCGATCT","9.80","8.24","45386","MMKQLKYRLILMNFLQFFIWGAWLISLGGYMASVLHYSGLEIGAIYGTMGIASLFMPGLLGILADKYVAAQKLLGACHLIGAILLVYASTLSSYSVFYPVMLLLCMSYMPTLALTNTIAYTAMEKAGMDIVREFPPIRVWGTVGFILAMWTVDICGWVMSSMQFYVSAVASLALGLYAFTLPHCPPAKENKKKGVLAVLGLDAFVLFRQRRMAIFFLFAMLLGAALQVTNTFGNPFLSHFADAYSESFAVQHPNVLLSLSQISETLFILTIPFFMGRFGIKRVMLMSMLAWVLRFAFFGLGNPGSGFIFLVLSMIVYGMAFDFFNISGSMFVDRETTPSIRAAAQGLFMIMTNGIGAIIGGFASGWVVDRFTDAGHTAWSTVWYIFAAYALVIAILFAFFFKSESSPLSRS","1928599 1929918","TIGR ID: PG1836","nucleoside-transporting protein nupG (nucleoside permease)","Inner membrane, Cytoplasm","Several significant hits to transport of nucleosides, permease proteins in gapped BLAST; e.g. residues 5-402 are 54% similar to gb|AAC76001.1| transport of nucleosides, permease protein of Escherichia coli K12, residues 5-402 are 54% similar to gb|AAG58095.1|AE005526_8 transport of nucleosides, permease protein of Escherichia coli O157:H7, residues 5-402 are 54% similar to sp|P09452|NUPG_ECOLI nucleoside permease (nucleoside-transport system protein) of Escherichia coli.This sequence is similar to BT4330.","
InterPro
IPR004740
Family
Nucleoside:H+ symporter
PF03825\"[2-406]TNuc_H_symport
TIGR00889\"[2-410]T2A0110
InterPro
IPR007114
Family
Major facilitator superfamily
PS50850\"[211-411]TMFS
noIPR
unintegrated
unintegrated
PTHR10074\"[7-410]TPTHR10074
SSF103473\"[2-402]TSSF103473


","BeTs to 5 clades of COG0477COG name: PermeasesFunctional Class: G,E,RThe phylogenetic pattern of COG0477 is AMTKYQVCEBRHUJGPo-INXNumber of proteins in this genome belonging to this COG is 5","***** IPB000576 (Proton/sugar symporter, LacY family) with a combined E-value of 3.6e-07. IPB000576A 5-46 IPB000576C 115-169 IPB000576E 262-298","Residues 5-185 are 49% similar to a (TRANSPORT TRANSMEMBRANE INNER MEMBRANE) protein domain (PD188276) which is seen in NUPG_ECOLI.Residues 187-375 are 53% similar to a (TRANSPORT TRANSMEMBRANE INNER MEMBRANE) protein domain (PD024372) which is seen in XAPB_ECOLI.Residues 11-185 are 27% similar to a (MALTOSE PERMEASE) protein domain (PD210539) which is seen in Q45632_BACST.","","Thu Jun 14 12:18:26 MDT 2001","","Thu Jun 14 12:18:26 MDT 2001","Thu Jun 14 12:18:26 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:18:26 MDT 2001","Thu Jun 14 12:18:26 MDT 2001","","","Thu Mar 22 13:25:58 MST 2001","Mon Jan 5 12:34:20 2004","Mon Mar 5 17:04:07 MST 2001","Tue Jun 26 08:50:47 MDT 2001","Tue Jun 26 08:50:47 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Mar 5 17:04:07 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 2 to 406 (E-value = 7.6e-182) place PG1601 in the Nuc_H_symport family which is described as Nucleoside H+ symporter (PF03825)","Tue Jun 26 08:50:47 MDT 2001","34541452","","","Westh Hansen,S.E., Jensen,N. and Munch-Petersen,A. 1987. Studies on the sequence and structure of the Escherichia coli K-12 nupG gene, encoding a nucleoside-transport system. Eur. J. Biochem. 168 (2): 385-391. PubMed: 3311747.","","Thu Mar 22 13:25:58 MST 2001","1","","","PG1836" "PG1602","1930303","1936794","6492","ATGAGAAAATTGAATTCTTTATTTTCGCTCGCCGTCCTATTATCCCTATTGTGTTGGGGACAGACGGCTGCCGCACAGGGAGGGCCGAAGACTGCTCCTTCTGTGACGCACCAAGCGGTGCAGAAAGGTATTCGAACATCCAAGGCCAAGGATCTCCGAGATCCGATTCCTGCCGGTATGGCACGAATTATCTTGGAGGCTCACGATGTATGGGAAGACGGCACAGGCTATCAAATGCTCTGGGATGCAGATCACAATCAGTACGGCGCATCCATTCCCGAAGAATCTTTTTGGTTTGCCAACGGAACGATCCCGGCCGGTCTTTACGATCCTTTCGAGTATAAAGTTCCGGTCAATGCCGATGCATCTTTTTCTCCCACGAATTTCGTGCTTGATGGAACAGCATCAGCCGATATTCCTGCCGGCACTTATGACTATGTAATCATTAACCCCAATCCTGGCATAATATATATAGTAGGAGAGGGTGTCTCCAAAGGTAACGATTATGTGGTAGAGGCCGGTAAGACTTATCATTTCACTGTCCAACGACAAGGCCCCGGCGATGCTGCGTCCGTTGTAGTGACCGGAGAAGGTGGCAATGAATTCGCTCCCGTACAGAATCTCCAATGGTCTGTATCCGGGCAGACAGTGACCCTCACTTGGCAAGCCCCCGCATCCGACAAACGGACTTATGTGTTGAACGAAAGCTTCGATACGCAAACGCTTCCTAACGGCTGGACAATGATCGATGCTGATGGTGATGGTCACAATTGGCTATCTACAATAAACGTTTACAACACTGCTACTCATACAGGTGACGGTGCTATGTTTAGCAAATCATGGACAGCTAGCAGTGGTGCAAAAATTGATTTGAGTCCTGACAACTATTTGGTAACTCCTAAGTTTACGGTTCCTGAGAATGGTAAACTTTCTTATTGGGTTTCATCTCAAGAGCCTTGGACTAATGAGCATTATGGAGTGTTCTTGTCCACAACCGGAAACGAGGCTGCAAACTTTACGATAAAGCTGCTGGAAGAAACCCTCGGATCCGGCAAACCTGCTCCGATGAACTTGGTGAAGAGTGAAGGAGTAAAGGCTCCGGCACCTTATCAGGAAAGAACCATCGATCTCTCTGCCTATGCCGGACAACAGGTGTACTTGGCATTCCGTCATTTCGGCTGTACAGGTATATTCCGTCTTTATCTTGATGACGTGGCTGTTTCTGGTGAAGGTTCTTCCAACGACTACACGTACACGGTATATCGTGACAATGTTGTTATCGCCCAGAATCTCACGGCAACGACATTCAATCAGGAAAATGTAGCTCCCGGCCAGTACAACTACTGTGTTGAAGTTAAGTACACAGCCGGCGTATCTCCGAAGGTATGTAAAGACGTTACGGTAGAAGGATCCAATGAATTTGCTCCTGTACAGAACCTGACCGGTAGTGCAGTCGGCCAGAAAGTAACGCTCAAGTGGGATGCACCTAATGGTACCCCGAATCCGAATCCGGGAACAACAACACTTTCCGAATCATTCGAAAATGGTATTCCTGCCTCATGGAAGACGATCGATGCAGACGGTGACGGCAACAATTGGACGACGACCCCTCCTCCCGGAGGCTCCTCTTTTGCAGGTCACAACAGTGCAATCTGTGTCTCTTCGGCTTCTTATATCAACTTTGAAGGCCCTCAGAACCCTGATAACTATCTGGTTACACCGGAGCTTTCTCTTCCTAACGGAGGAACGCTTACTTTCTGGGTATGTGCACAAGATGCCAATTATGCATCAGAGCACTATGCCGTGTATGCATCTTCTACGGGTAACGACGCTTCCAACTTCGCCAACGCTTTGTTGGAAGAAGTGCTGACGGCCAAGACAGTTGTTACGGCACCGGAAGCCATTCGTGGCACTCGTGTTCAGGGCACCTGGTATCAAAAGACGGTACAGTTGCCTGCGGGTACTAAGTATGTTGCCTTCCGTCACTTCGGCTGTACGGACTTCTTCTGGATCAACCTCGATGATGTTGAGATCAAGGCCAACGGCAAGCGCGCAGACTTCACGGAAACGTTCGAGTCTTCTACTCATGGAGAGGCACCAGCGGAATGGACTACTATCGATGCCGATGGCGATGGTCAGGGTTGGCTCTGTCTGTCTTCCGGACAATTGGGATGGCTGACAGCTCATGGCGGCACCAACGTAGTAGCCTCTTTCTCATGGAATGGAATGGCTTTGAATCCTGATAACTATCTCATCTCAAAGGATGTTACAGGCGCAACGAAGGTAAAGTACTACTATGCAGTCAACGACGGTTTTCCCGGGGATCACTATGCGGTGATGATCTCCAAGACGGGCACGAACGCCGGAGACTTCACGGTCGTTTTCGAAGAAACGCCTAACGGAATAAATAAGGGCGGAGCAAGATTCGGTCTTTCCACGGAAGCCAATGGCGCCAAACCTCAAAGTGTATGGATCGAGCGTACGGTAGATTTGCCTGCGGGCACGAAGTATGTTGCTTTCCGTCACTACAATTGCTCGGATTTGAACTACATTCTTTTGGATGATATTCAGTTCACCATGGGTGGCAGCCCCACCCCGACCGATTATACCTACACGGTGTATCGTGATGGTACGAAGATCAAGGAAGGTTTGACCGAAACGACCTTCGAAGAAGACGGCGTAGCTACGGGCAATCATGAGTATTGCGTGGAAGTGAAGTACACAGCCGGCGTATCTCCGAAAGAGTGTGTAAACGTAACTGTTGATCCTGTGCAGTTTAATCCTGTACAGAACCTGACCGGTAGTGCAGTAGGTCAGAAAGTAACGCTTAAGTGGGATGCACCTAATGGTACCCCGAATCCGAATCCCGGAACAACTACACTTTCCGAATCATTCGAAAATGGTATTCCTGCCTCATGGAAGACGATCGATGCAGACGGTGACGGCAACAATTGGACGACGACCCCTCCTCCCGGAGGCACCTCTTTTGCAGGTCACAACAGTGCGATCTGTGTCTCTTCGGCTTCTTATATCAACTTTGAAGGCCCTCAGAACCCTGATAACTATCTGGTTACACCGGAGCTATCTCTTCCTAACGGAGGAACGCTTACTTTCTGGGTATGTGCACAAGATGCCAATTATGCATCAGAGCACTATGCCGTGTATGCATCTTCTACGGGTAACGACGCTTCCAACTTCGCCAACGCTTTGTTGGAAGAAGTGCTGACGGCCAAGACAGTTGTTACGGCACCTGAAGCCATTCGTGGCACTCGTGTTCAGGGCACCTGGTATCAAAAGACGGTACAGTTGCCTGCGGGTACTAAGTATGTTGCCTTCCGTCACTTCGGCTGTACGGACTTCTTCTGGATCAACCTCGATGATGTTGAGATCAAGGCCAACGGCAAGCGCGCAGACTTCACGGAAACGTTCGAGTCTTCTACTCATGGAGAGGCACCAGCGGAATGGACTACTATCGATGCCGATGGCGATGGTCAGGGTTGGCTCTGTCTGTCTTCCGGACAATTGGACTGGCTGACAGCTCATGGCGGCACCAACGTAGTAGCCTCTTTCTCATGGAATGGAATGGCTTTGAATCCTGATAACTATCTCATCTCAAAGGATGTTACAGGCGCAACGAAGGTAAAGTACTACTATGCAGTCAACGACGGTTTTCCCGGGGATCACTATGCGGTGATGATCTCCAAGACGGGCACGAACGCCGGAGACTTCACGGTTGTTTTCGAAGAAACGCCTAACGGAATAAATAAGGGCGGAGCAAGATTCGGTCTTTCCACGGAAGCCAATGGCGCCAAACCTCAAAGTGTATGGATCGAGCGTACGGTAGATTTGCCTGCGGGCACGAAGTATGTTGCTTTCCGTCACTACAATTGCTCGGATTTGAACTACATTCTTTTGGATGATATTCAGTTCACCATGGGTGGCAGCCCCACCCCGACCGATTATACCTACACGGTGTATCGTGATGGTACGAAGATCAAGGAAGGTTTGACCGAAACGACCTTCGAAGAAGACGGCGTAGCTACGGGCAATCATGAGTATTGCGTGGAAGTGAAGTACACAGCCGGCGTATCTCCGAAAGAGTGCGTAAACGTAACTGTTGATCCTGTGCAGTTCAATCCTGTACAGAACCTGACCGGTAGTGCAGTCGGCCAGAAAGTAACGCTCAAGTGGGATGCACCTAATGGTACCCCGAATCCGAATCCGGGAACAACAACACTTTCCGAATCATTCGAAAATGGTATTCCTGCCTCATGGAAGACGATCGATGCAGACGGTGACGGCAACAATTGGACGACGACCCCTCCTCCCGGAGGCACCTCTTTTGCAGGTCACAACAGTGCGATCTGTGTCTCTTCGGCTTCTTATATCAACTTTGAAGGCCCTCAGAACCCTGATAACTATCTGGTTACACCGGAGCTTTCTCTTCCTAACGGAGGAACGCTTACTTTCTGGGTATGTGCACAAGATGCCAATTATGCATCAGAGCACTATGCCGTGTATGCATCTTCTACGGGTAACGACGCTTCCAACTTCGCCAACGCTTTGTTGGAAGAAGTGCTGACGGCCAAGACAGTTGTTACGGCACCGGAAGCCATTCGTGGTACTCGTGTTCAGGGCACCTGGTATCAAAAGACGGTACAGTTGCCTGCGGGTACTAAGTATGTTGCCTTCCGTCACTTCGGCTGTACGGACTTCTTCTGGATCAACCTCGATGATGTTGAGATCAAGGCCAACGGCAAGCGCGCAGACTTCACGGAAACGTTCGAGTCTTCTACTCATGGAGAGGCACCAGCGGAATGGACTACTATCGATGCCGATGGCGATGGTCAGGGTTGGCTCTGTCTGTCTTCCGGACAATTGGGATGGCTGACAGCTCATGGCGGCACCAACGTAGTAGCCTCTTTCTCATGGAATGGAATGGCTTTGAATCCTGATAACTATCTCATCTCAAAGGATGTTACAGGCGCAACGAAGGTAAAGTACTACTATGCAGTCAACGACGGTTTTCCCGGGGATCACTATGCGGTGATGATCTCCAAGACGGGCACGAACGCCGGAGACTTCACGGTCGTTTTCGAAGAAACGCCTAACGGAATAAATAAGGGCGGAGCAAGATTCGGTCTTTCCACGGAAGCCAATGGCGCCAAACCTCAAAGTGTATGGATCGAGCGTACGGTAGATTTGCCTGCGGGCACGAAGTATGTTGCTTTCCGTCACTACAATTGCTCGGATTTGAACTACATTCTTTTGGATGATATTCAGTTCACCATGGGTGGCAGCCCCACCCCGACCGATTATACCTACACGGTGTATCGTGATGGTACGAAGATCAAGGAAGGTTTGACCGAAACGACCTTCGAAGAAGACGGCGTAGCTACGGGCAATCATGAGTATTGCGTGGAAGTGAAGTACACAGCCGGCGTATCTCCGAAAGAGTGCGTAAACGTAACTATTAATCCGACACAGTTCAATCCTGTACAGAACCTGACGGCAGAACAAGCTCCTAACAGCATGGATGCAATCCTTAAATGGAATGCACCGGCATCTAAGCGTGCGGAAGTTCTGAACGAAGACTTCGAAAATGGTATTCCTGCCTCATGGAAGACGATCGATGCAGACGGTGACGGCAACAATTGGACGACGACCCCTCCTCCCGGAGGCTCCTCTTTTGCAGGTCACAACAGTGCGATCTGTGTCTCTTCGGCTTCTTATATCAACTTTGAAGGTCCTCAGAACCCTGATAACTATCTGGTTACACCGGAGCTTTCTCTTCCTGGCGGAGGAACGCTTACTTTCTGGGTATGTGCACAAGATGCCAATTATGCATCAGAGCACTATGCCGTGTATGCATCTTCTACGGGTAACGACGCTTCCAACTTCGCCAACGCTTTGTTGGAAGAAGTGCTGACGGCCAAGACAGTTGTTACGGCACCGGAAGCCATTCGTGGTACTCGTGTTCAGGGCACCTGGTATCAAAAGACGGTACAGTTGCCTGCGGGTACTAAGTATGTTGCCTTCCGTCACTTCGGCTGTACGGACTTCTTCTGGATCAACCTTGATGATGTTGTAATCACTTCAGGGAACGCTCCGTCTTACACCTATACGATCTATCGTAATAATACACAGATAGCATCAGGCGTAACGGAGACTACTTACCGAGATCCGGACTTGGCTACCGGTTTTTACACGTACGGTGTTAAGGTTGTTTACCCGAACGGAGAATCAGCTATCGAAACTGCTACGTTGAATATCACTTCGTTGGCAGACGTAACGGCTCAGAAGCCTTACACGCTGACAGTTGTAGGAAAGACGATCACGGTAACTTGCCAAGGCGAAGCTATGATCTACGACATGAACGGTCGTCGTCTGGCAGCGGGTCGCAACACGGTTGTTTACACGGCTCAGGGCGGCCACTATGCAGTCATGGTTGTCGTTGACGGCAAGTCCTACGTAGAGAAACTCGCTGTAAAG","4.50","-94.49","233403","MRKLNSLFSLAVLLSLLCWGQTAAAQGGPKTAPSVTHQAVQKGIRTSKAKDLRDPIPAGMARIILEAHDVWEDGTGYQMLWDADHNQYGASIPEESFWFANGTIPAGLYDPFEYKVPVNADASFSPTNFVLDGTASADIPAGTYDYVIINPNPGIIYIVGEGVSKGNDYVVEAGKTYHFTVQRQGPGDAASVVVTGEGGNEFAPVQNLQWSVSGQTVTLTWQAPASDKRTYVLNESFDTQTLPNGWTMIDADGDGHNWLSTINVYNTATHTGDGAMFSKSWTASSGAKIDLSPDNYLVTPKFTVPENGKLSYWVSSQEPWTNEHYGVFLSTTGNEAANFTIKLLEETLGSGKPAPMNLVKSEGVKAPAPYQERTIDLSAYAGQQVYLAFRHFGCTGIFRLYLDDVAVSGEGSSNDYTYTVYRDNVVIAQNLTATTFNQENVAPGQYNYCVEVKYTAGVSPKVCKDVTVEGSNEFAPVQNLTGSAVGQKVTLKWDAPNGTPNPNPGTTTLSESFENGIPASWKTIDADGDGNNWTTTPPPGGSSFAGHNSAICVSSASYINFEGPQNPDNYLVTPELSLPNGGTLTFWVCAQDANYASEHYAVYASSTGNDASNFANALLEEVLTAKTVVTAPEAIRGTRVQGTWYQKTVQLPAGTKYVAFRHFGCTDFFWINLDDVEIKANGKRADFTETFESSTHGEAPAEWTTIDADGDGQGWLCLSSGQLGWLTAHGGTNVVASFSWNGMALNPDNYLISKDVTGATKVKYYYAVNDGFPGDHYAVMISKTGTNAGDFTVVFEETPNGINKGGARFGLSTEANGAKPQSVWIERTVDLPAGTKYVAFRHYNCSDLNYILLDDIQFTMGGSPTPTDYTYTVYRDGTKIKEGLTETTFEEDGVATGNHEYCVEVKYTAGVSPKECVNVTVDPVQFNPVQNLTGSAVGQKVTLKWDAPNGTPNPNPGTTTLSESFENGIPASWKTIDADGDGNNWTTTPPPGGTSFAGHNSAICVSSASYINFEGPQNPDNYLVTPELSLPNGGTLTFWVCAQDANYASEHYAVYASSTGNDASNFANALLEEVLTAKTVVTAPEAIRGTRVQGTWYQKTVQLPAGTKYVAFRHFGCTDFFWINLDDVEIKANGKRADFTETFESSTHGEAPAEWTTIDADGDGQGWLCLSSGQLDWLTAHGGTNVVASFSWNGMALNPDNYLISKDVTGATKVKYYYAVNDGFPGDHYAVMISKTGTNAGDFTVVFEETPNGINKGGARFGLSTEANGAKPQSVWIERTVDLPAGTKYVAFRHYNCSDLNYILLDDIQFTMGGSPTPTDYTYTVYRDGTKIKEGLTETTFEEDGVATGNHEYCVEVKYTAGVSPKECVNVTVDPVQFNPVQNLTGSAVGQKVTLKWDAPNGTPNPNPGTTTLSESFENGIPASWKTIDADGDGNNWTTTPPPGGTSFAGHNSAICVSSASYINFEGPQNPDNYLVTPELSLPNGGTLTFWVCAQDANYASEHYAVYASSTGNDASNFANALLEEVLTAKTVVTAPEAIRGTRVQGTWYQKTVQLPAGTKYVAFRHFGCTDFFWINLDDVEIKANGKRADFTETFESSTHGEAPAEWTTIDADGDGQGWLCLSSGQLGWLTAHGGTNVVASFSWNGMALNPDNYLISKDVTGATKVKYYYAVNDGFPGDHYAVMISKTGTNAGDFTVVFEETPNGINKGGARFGLSTEANGAKPQSVWIERTVDLPAGTKYVAFRHYNCSDLNYILLDDIQFTMGGSPTPTDYTYTVYRDGTKIKEGLTETTFEEDGVATGNHEYCVEVKYTAGVSPKECVNVTINPTQFNPVQNLTAEQAPNSMDAILKWNAPASKRAEVLNEDFENGIPASWKTIDADGDGNNWTTTPPPGGSSFAGHNSAICVSSASYINFEGPQNPDNYLVTPELSLPGGGTLTFWVCAQDANYASEHYAVYASSTGNDASNFANALLEEVLTAKTVVTAPEAIRGTRVQGTWYQKTVQLPAGTKYVAFRHFGCTDFFWINLDDVVITSGNAPSYTYTIYRNNTQIASGVTETTYRDPDLATGFYTYGVKVVYPNGESAIETATLNITSLADVTAQKPYTLTVVGKTITVTCQGEAMIYDMNGRRLAAGRNTVVYTAQGGHYAVMVVVDGKSYVEKLAVK","1930303 1936794","PG1602 appears to be short one repeat unit.HagD and hagE are related to hagA: hagD is part of PG1605 (prtP) and hagE is part of PG1768 (prtR). HagB (PG1721) and hagC (PG1724) are hemagglutinin genes with no sequence similarity to hagA.The HbR protein is synthesized through peptide cleavage from hagA (Shi et al., 2000).Shibata et al. (1999) assert that 'PVQNLT\" is a characteristic hemagglutinin-associated motif. See around residue 450.Veith et al. 2002 identified this protein by two-dimensional gel electrophoresis and peptide mass fingerprinting of outer membranes prepared from strain W50. They present the following results: Based on signal peptide sequence comparisons to PG0626, PG0627, PG1592, PG1840, PG0836, PG0023, PG1893, the mature N-terminus of this protein is predicted to be pyroglutamate. RgpA, Kgp and HagA were identified as fully processed domains. The N- and C-termini of many of these domains were identified by mass spectrometry and or N-terminal sequence analysis. It was found that gaps existed between many of the domains. The proposed domain structure of HagA is as follows: HagA signal peptide (1-25), HagA35 (26-351), HagA30 (366-625), HagA18 (658-803), HagA32 (820-1077), HagA18 (1137-1255), HagA32(1272-1529), HagA18 (1589-1707), HagA15 (1724-1856), HagA13 (1859-1978), HagA20 (1980-2164).TIGR ID: PG1837","hemagglutinin/adhesin precursor hagA","Extracellular, Outer membrane, Periplasm","This sequence corresponds to the previously sequenced U41807 in GenBANK, a predicted hagA protein. Residues 1-2058 are 96% similar to residues 1-2042 of U41807, however the latter sequence has a complete length of 2628, suggesting that PG1602 is short one repeat unit (or there is a strain difference). ","
InterPro
IPR000977
Family
ATP-dependent DNA ligase
PS00697\"[677-685]?DNA_LIGASE_A1
InterPro
IPR003961
Domain
Fibronectin, type III
SM00060\"[202-459]T\"[474-599]TFN3
InterPro
IPR011628
Domain
Cleaved adhesin
PF07675\"[230-407]T\"[506-678]T\"[687-858]T\"[958-1000]TCleaved_Adhesin
noIPR
unintegrated
unintegrated
signalp\"[1-25]?signal-peptide


","No hit to the COGs database.","***** PF01364 (Peptidase family C25) with a combined E-value of 5.2e-85. PF01364A 1127-1176 PF01364F 2068-2121 PF01364G 2122-2160 PF01364C 37-90 PF01364D 113-150 PF01364F 898-951 PF01364F 1350-1403 PF01364F 445-498 PF01364F 1802-1855","Residues 2028-2077 are identical to a (PROTEASE PRECURSOR SIGNAL THIOL HEMAGGLUTININ REPEAT) protein domain (PD002028) which is seen in HAGA_PORGI.Residues 2079-2164 are identical to a (PROTEASE PRECURSOR THIOL SIGNAL) protein domain (PD004371) which is seen in HAGA_PORGI.Residues 1825-2027 are 99% similar to a (PROTEASE PRECURSOR SIGNAL HEMAGGLUTININ THIOL REPEAT) protein domain (PD001858) which is seen in HAGA_PORGI.Residues 1759-1818 are 60% similar to a (PROTEASE THIOL REPEAT PRECURSOR) protein domain (PD013956) which is seen in P72197_PORGI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Thu Feb 7 12:40:28 2002","Wed May 16 18:12:14 MDT 2001","Fri Mar 23 17:42:05 MST 2001","Tue Dec 5 13:54:44 MST 2000","Fri Mar 23 17:42:05 MST 2001","Fri Mar 23 17:42:05 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1602 shows fragmentary (domain) similarity to:PG1768 arginine-specific cysteine proteinasePG1605 porphypain polyproteinPG1606 hemagglutinin-related proteinPG1164 tonB linked outer membrane receptorPG0376 lysine-specific cysteine proteinase porphypain polyproteinPG1922 immunoreactive 32 kD antigenPG0461 arginine-specific cysteine proteinase","Tue Jun 5 10:31:46 MDT 2001","Fri Mar 23 17:42:05 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Sun Jun 24 14:51:32 MDT 2001","34541453","","See Proteases/Hemagglutinin Analysis.
Veith,P., Talbo,G., Slakeski,N., Dashper,S., Moore,C.,Paolini,R., Reynolds,E., Major outer membrane proteins and proteolytic processing of RgpA, and Kgp of Porphyromonas gingivalis W50, Biochem J. 2002 (in press).Han,N., Whitlock,J. and Progulske-Fox,A.The hemagglutinin gene A (hagA) of Porphyromonas gingivalis 381contains four large, contiguous, direct repeatsInfect. Immun. 64 (10), 4000-4007 (1996)Shi Y, Kong W, Nakayama K.Human lactoferrin binds and removes the hemoglobin receptor protein of the periodontopathogen Porphyromonas gingivalis.J Biol Chem. 2000 Sep 29;275(39):30002-8.PMID: 10811640 Shibata Y, Hayakawa M, Takiguchi H, Shiroza T, Abiko Y.Determination and characterization of the hemagglutinin-associated short motifs found in Porphyromonas gingivalis multiple gene products.J Biol Chem. 1999 Feb 19;274(8):5012-20.PMID: 9988746 ","","Thu Feb 7 12:40:28 2002","","1","","","PG1837" "PG1603","1937453","1938373","921","ATGAATATTAAATTCAAACCGGTAGAACCTGCTGACAGATCAGCTATAACAACTATCACCTTTTCTTCAGTGGCAAGAATTTGCGACCTGGCTTTTTCCAATCTCTATTGCTGGAGTTTCGTCTATGGCACGTCTTGGGCTATTGTGGAGGGCTGTCTGATCATCCGTTTCAAACCGAAAAGCCGTAGTCATCCGGTCTATCTCTTTCCTGTGGGAGCTGATCCTGAGCAAGTAGTGGCCGCTGCCCATCGACTGAAAGCAGAAGTAGTGCACGAAGATTATCCCTTGATATTTATGGGTGTGACTCCCGATATTCACCGATGTATAGAGGAACATTGCTCGGCTGAGTATTACTTTATCGAGGATGAAGCCTATTGCGACTACATATACGAACGTGAAAGTTTAGCGACTTTGTCAGGCAAAAAGTTGCAGGCCAAGCGCAATCATATCAATAAATTTGTCTCTCTCTATCCTGACTATACATACGATCCTGTTAAGGATAGCGATGCCGAAGAATGCTTGATGCTGGCTCATCTATGGCTGGATAGCCGAGGTGATCAGGACGGAAGAGAGCTGGAGGTAGAGATGGTAGAGCGTGCTTTTCGGCATCGTCAGGAGCTGGGGCTTTCGGGGGGAGTACTACGAGTCGGTGGCCGGGTAGTGGCTTTCTGTTTAGGCTCCCCTATCAATACCGACACTTTTGGGGTACATATCGAAAAGGCCGATGCTATGGTGGAAGGCGCGTTTGCGATGATTAATAGAGAATTTGCCCGTTCGATACCGGACACATTCCGCTACATCAATCGCGAGGAGGATTTGGGGCTGCCGGGACTGCGCCAGGCCAAACTATCTTATCGCCCTGCCATTCTTTTGCCCAAACAAACAGCCATACTGCGACGCGATCATGACCGAATCCAAGCG","6.20","-4.95","34975","MNIKFKPVEPADRSAITTITFSSVARICDLAFSNLYCWSFVYGTSWAIVEGCLIIRFKPKSRSHPVYLFPVGADPEQVVAAAHRLKAEVVHEDYPLIFMGVTPDIHRCIEEHCSAEYYFIEDEAYCDYIYERESLATLSGKKLQAKRNHINKFVSLYPDYTYDPVKDSDAEECLMLAHLWLDSRGDQDGRELEVEMVERAFRHRQELGLSGGVLRVGGRVVAFCLGSPINTDTFGVHIEKADAMVEGAFAMINREFARSIPDTFRYINREEDLGLPGLRQAKLSYRPAILLPKQTAILRRDHDRIQA","1937435 1938373 [Shorter 2078 155 99]","TIGR ID: PG1841","conserved hypothetical protein","Cytoplasm","Residues 27-299 have 29% similarity to AE001465, H. pylori hypothetical protein.","
noIPR
unintegrated
unintegrated
tmhmm\"[35-55]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 27-299 are 27% similar to a (PROTEIN PUTATIVE) protein domain (PD127648) which is seen in Q9ZME3_BBBBB.","","Thu Jun 14 12:18:52 MDT 2001","","Thu Jun 14 12:18:52 MDT 2001","Thu Jun 14 12:18:52 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:18:52 MDT 2001","Thu Jun 14 12:18:52 MDT 2001","","","Mon Mar 5 17:07:41 MST 2001","Tue Jun 26 08:46:59 MDT 2001","Mon Mar 5 17:07:41 MST 2001","","Tue Jun 26 08:46:59 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Mar 5 17:07:41 MST 2001","-56% similar to PDB:2HQY Crystal structure of conserved hypothetical protein from Bacteroides thetaiotaomicron VPI-5482 (E_value = 4.0E_59);-60% similar to PDB:2CKF CRYSTAL STRUCTURE OF THE TERMINAL COMPONENT OF THE PAH-HYDROXYLATING DIOXYGENASE FROM SPHINGOMONAS SP CHY-1 (E_value = 4.0E_59);-52% similar to PDB:1R4X Crystal Structure Analys of the Gamma-COPI Appendage domain (E_value = 4.0E_59);-46% similar to PDB:1V1O STAPHYLOCOCCAL SUPERANTIGEN-LIKE PROTEIN 7 (E_value = 4.0E_59);-46% similar to PDB:1V1P THE STRUCTURE SSL FROM STAPHYLOCOCCUS AUREUS FROM AN ORTHORHOMBIC CRYSTAL FORM (E_value = 4.0E_59);","","","No significant hits to the Pfam 11.0 database","Tue Jun 26 08:46:59 MDT 2001","34541455","","","","","","1","","","PG1841" "PG1604","1938384","1939373","990","GTGCGGCTATGGCGCATCTGCTTCAAAGACCCTGAGCCTTTCATTGAGCTTTATTTCCACAAAGTTTTCCGTGAGGATTATACCTTGCTACAGTATAGCGAGACAGGAGAGGCTGTAGCACATCTGCAAATGCTTCCTTATCAACTGCGAATTTTTGGCACTTCTTTCTCAGCCGGTTATATTTCCGGAGCATGCACACACCCCGATCATCGTGGCAAAGGCATTATGCGCACGATGATGGCGGAAGCTCTTTCAGCCATATATGACCGTGGCGATATCTGTAGTTTCCTTATTCCTGCCGAAACATGGCTGTACGATTTCTACTCTCGCAGCGGTGGCTATGCGCCGGCCTTTGGTCGGAAACAATTCCTATATAGACCGAATTCTATCCCACAAAAGTTTCCCAGCGGCTATGCCTGTACGATCGGACAGGGAGATTACAGCTTTCTCTCAGCCGAGGAACATACGGATATTCGCTTGGCCGTACAGCATACCCTCGGGCAGTGGCAAACGGCTTTGAAGGATTTTTCTTTGGCAGGTGGTAATGTTGCCATGTTGCAGGACAGTGCCGGTAAGACTGTAAGTCAGGCTTGTTTTGTTCCGAGAGAAAATAGTCTTGATATCAAACTGCTTGTAGGGGACGCCGAAGCAACATTCATACTTGTCGATCACCTGCTCCGATCTTTGGATTGTGACCATGCCTCTATTCTTGCACATTCGGGAAGTGCTCCATACGGAATGCTCAGGATCCTACGCCCGATACCCATACTCGAAGCCTTTGCTCAGTACCATCCTGCAGAAGGTTACTCTTTCGCATATAGTGACCCTCTTTTCTCTCAGCATAATGGTACCTATCATATCAGTAAGGGGCGTATTGTCTTTTCGAACAATGTACAGCCCGAGAACTCTTTACTTCCACATCACACCCCCGACTCCTTAGTCAAGGATCTTTTTTCCCCTTTCCCCTCCGCTCTCTTCCTCATGCTGGAC","6.50","-3.91","36999","VRLWRICFKDPEPFIELYFHKVFREDYTLLQYSETGEAVAHLQMLPYQLRIFGTSFSAGYISGACTHPDHRGKGIMRTMMAEALSAIYDRGDICSFLIPAETWLYDFYSRSGGYAPAFGRKQFLYRPNSIPQKFPSGYACTIGQGDYSFLSAEEHTDIRLAVQHTLGQWQTALKDFSLAGGNVAMLQDSAGKTVSQACFVPRENSLDIKLLVGDAEATFILVDHLLRSLDCDHASILAHSGSAPYGMLRILRPIPILEAFAQYHPAEGYSFAYSDPLFSQHNGTYHISKGRIVFSNNVQPENSLLPHHTPDSLVKDLFSPFPSALFLMLD","1938219 1939373 [Bad Olap 2077 155 0]","TIGR ID: PG1842","hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST.","
InterPro
IPR000182
Domain
GCN5-related N-acetyltransferase
PF00583\"[30-114]TAcetyltransf_1
PS51186\"[1-141]TGNAT


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 12:19:04 MDT 2001","","Thu Jun 14 12:19:04 MDT 2001","Thu Jun 14 12:19:04 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:19:04 MDT 2001","Thu Jun 14 12:19:04 MDT 2001","","","","Tue Jun 26 08:45:02 MDT 2001","Thu Jun 14 12:19:04 MDT 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Jun 14 12:19:04 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Jun 26 08:45:02 MDT 2001","34541456","","","","","","1","","","PG1842" "PG1605","1939824","1945016","5193","ATGAGGAAATTATTATTGCTGATCGCGGCGTCCCTTTTGGGAGTTGGTCTTTACGCCCAAAGCGCCAAGATTAAGCTTGATGCTCCGACTACTCGAACGACATGTACGAACAATAGCTTCAAGCAGTTCGATGCAAGCTTTTCGTTCAATGAAGTCGAGCTGACAAAGGTGGAGACCAAAGGTGGTACTTTCGCCTCAGTGTCAATTCCGGGTGCATTCCCGACCGGTGAGGTTGGTTCTCCCGAAGTGCCAGCAGTTAGGAAGTTGATTGCTGTGCCTGTCGGAGCCACACCTGTTGTTCGCGTGAAAAGTTTTACCGAGCAAGTTTACTCTCTGAACCAATACGGTTCCGAAAAACTCATGCCACATCAACCCTCTATGAGCAAGAGTGATGATCCCGAAAAGGTTCCCTTCGTTTACAATGCTGCTGCTTATGCACGCAAAGGTTTTGTCGGACAAGAACTGACCCAAGTAGAAATGTTGGGGACAATGCGTGGTGTTCGCATTGCAGCTCTTACCATTAATCCTGTTCAGTATGATGTGGTTGCAAACCAATTGAAGGTTAGAAACAACATCGAAATTGAAGTAAGCTTTCAAGGAGCTGATGAAGTAGCTACACAACGTTTGTATGATGCTTCTTTTAGCCCTTATTTCGAAACAGCTTATAAACAGCTCTTCAATAGAGATGTTTATACAGATCATGGCGACTTGTATAATACGCCGGTTCGTATGCTTGTTGTTGCAGGTGCAAAATTCAAAGAAGCTCTCAAGCCTTGGCTCACTTGGAAGGCTCAAAAGGGCTTCTATCTGGATGTGCATTACACAGACGAAGCTGAAGTAGGAACGACAAACGCCTCTATCAAGGCATTTATTCACAAGAAATACAATGATGGATTGGCAGCTAGTGCTGCTCCGGTCTTCTTGGCTTTGGTTGGTGACACTGACGTTATTAGCGGAGAAAAAGGAAAGAAAACAAAAAAAGTTACCGACTTGTATTACAGTGCAGTCGATGGCGACTATTTCCCTGAAATGTATACTTTCCGTATGTCTGCTTCTTCCCCAGAAGAACTGACGAACATCATTGATAAGGTATTGATGTATGAAAAGGCTACTATGCCAGATAAGAGTTATTTGGAGAAAGTTCTCTTGATTGCAGGTGCAGATTATAGCTGGAATTCCCAGGTAGGTCAGCCAACCATTAAATACGGTATGCAGTACTACTACAACCAAGAGCATGGTTATACCGACGTGTACAACTATCTCAAAGCCCCTTATACAGGTTGCTACAGTCATTTGAATACCGGAGTCAGCTTTGCAAACTATACAGCGCATGGATCTGAGACCGCATGGGCTGATCCACTTCTGACTACTTCTCAACTGAAAGCACTCACTAATAAGGACAAATACTTCTTAGCTATTGGCAACTGCTGTATTACAGCTCAATTCGATTATGTACAGCCTTGCTTCGGAGAGGTAATAACTCGCGTTAAGGAGAAAGGGGCTTATGCCTATATCGGTTCATCTCCAAATTCTTATTGGGGCGAGGACTACTATTGGAGTGTGGGTGCTAATGCCGTATTTGGTGTTCAGCCTACTTTTGAAGGTACGTCTATGGGTTCTTATGATGCTACATTCTTGGAGGATTCGTACAACACAGTGAATTCTATTATGTGGGCAGGTAATCTTGCCGCTACTCATGCTGGAAATATCGGCAATATTACCCATATTGGTGCTCATTACTATTGGGAAGCTTATCATGTCCTTGGCGATGGTTCGGTTATGCCTTATCGTGCAATGCCTAAGACCAATACTTATACGCTTCCTGCCTCTTTGCCTCAGAATCAGGCTTCTTATAGCATTCAGGCTTCTGCCGGTTCTTACGTAGCTATTTCTAAAGATGGAGTTTTGTATGGAACAGGTGTTGCTAATGCCAGCGGTGTTGCGACTGTGAGTATGACTAAGCAGATTACGGAAAATGGTAATTATGATGTAGTTATCACTCGCTCTAATTATCTTCCTGTGATCAAGCAAATTCAGGTAGGTGAGCCTAGCCCCTACCAGCCCGTTTCCAACTTGACAGCTACAACGCAGGGTCAGAAAGTAACGCTCAAGTGGGAAGCACCGAGCGCAAAGAAGGCAGAAGGTTCCCGTGAAGTAAAACGGATCGGAGACGGTCTTTTCGTTACGATCGAACCTGCAAACGATGTACGTGCCAACGAAGCCAAGGTTGTGCTTGCGGCAGACAACGTATGGGGAGACAATACGGGTTACCAGTTCTTGTTGGATGCCGATCACAATACATTCGGAAGTGTCATTCCGGCAACCGGTCCTCTCTTTACCGGAACAGCTTCTTCCAATCTTTACAGTGCGAACTTCGAGTATTTGATCCCGGCCAATGCCGATCCTGTTGTTACTACACAGAATATTATCGTTACAGGACAGGGTGAAGTTGTAATCCCCGGTGGTGTTTACGACTATTGCATTACGAACCCGGAACCTGCATCCGGAAAGATGTGGATCGCAGGAGATGGAGGCAACCAGCCTGCACGTTATGACGATTTCACATTCGAAGCAGGCAAGAAGTACACCTTCACGATGCGTCGCGCCGGAATGGGAGATGGAACTGATATGGAAGTCGAAGACGATTCACCTGCAAGCTATACCTACACGGTGTATCGTGACGGCACGAAGATCAAGGAAGGTCTGACAGCTACGACATTCGAAGAAGACGGTGTAGCTGCAGGCAATCATGAGTATTGCGTGGAAGTTAAGTACACAGCCGGCGTATCTCCGAAGGTATGTAAAGACGTTACGGTAGAAGGATCCAATGAATTTGCTCCTGTACAGAACCTGACCGGTAGTTCAGTAGGTCAGAAAGTAACGCTTAAGTGGGATGCACCTAATGGTACCCCGAATCCGAATCCAAATCCGAATCCGAATCCGGGAACAACACTTTCCGAATCATTCGAAAATGGTATTCCGGCATCTTGGAAGACGATCGATGCAGACGGTGACGGGCATGGCTGGAAACCTGGAAATGCTCCCGGAATCGCTGGCTACAATAGCAATGGTTGTGTATATTCAGAGTCATTCGGTCTTGGTGGTATAGGAGTTCTTACCCCTGACAACTATCTGATAACACCGGCATTGGATTTGCCTAACGGAGGTAAGTTGACTTTCTGGGTATGCGCACAGGATGCTAATTATGCATCCGAGCACTATGCGGTGTATGCATCTTCGACCGGTAACGATGCATCCAACTTCACGAATGCTTTGTTGGAAGAGACGATTACGGCAAAAGGTGTTCGCTCGCCGAAAGCTATTCGTGGTCGTATACAGGGTACTTGGCGCCAGAAGACGGTAGACCTTCCCGCAGGTACGAAATATGTTGCTTTCCGTCACTTCCAAAGCACGGATATGTTCTACATCGACCTTGATGAGGTTGAGATCAAGGCCAATGGCAAGCGCGCAGACTTCACGGAAACGTTCGAGTCTTCTACTCATGGAGAGGCACCAGCGGAATGGACTACTATCGATGCCGATGGCGATGGTCAGGGTTGGCTCTGTCTGTCTTCCGGACAATTGGACTGGCTGACAGCTCATGGCGGCAGCAACGTAGTAAGCTCTTTCTCATGGAATGGAATGGCTTTGAATCCTGATAACTATCTCATCTCAAAGGATGTTACAGGCGCAACGAAGGTAAAGTACTACTATGCAGTCAACGACGGTTTTCCCGGGGATCACTATGCGGTGATGATCTCCAAGACGGGCACGAACGCCGGAGACTTCACGGTTGTTTTCGAAGAAACGCCTAACGGAATAAATAAGGGCGGAGCAAGATTCGGTCTTTCCACGGAAGCCAATGGCGCCAAACCTCAAAGTGTATGGATCGAGCGTACGGTAGATTTGCCTGCAGGCACGAAGTATGTTGCTTTCCGTCACTACAATTGCTCGGATTTGAACTACATTCTTTTGGATGATATTCAGTTCACCATGGGTGGCAGCCCCACCCCGACCGATTATACCTACACGGTGTATCGTGATGGTACGAAGATCAAGGAAGGTTTGACCGAAACGACCTTCGAAGAAGACGGCGTAGCTACGGGCAATCATGAGTATTGCGTGGAAGTGAAGTACACAGCCGGCGTATCTCCGAAGAAATGTGTAAACGTAACTGTTAATTCGACACAGTTCAATCCTGTACAGAACCTGACGGCAGAACAAGCTCCTAACAGCATGGATGCAATCCTTAAATGGAATGCACCGGCATCTAAGCGTGCGGAAGTTCTGAACGAAGACTTCGAAAATGGTATTCCTGCCTCATGGAAGACGATCGATGCAGACGGTGACGGCAACAATTGGACGACGACCCCTCCTCCCGGAGGCTCCTCTTTTGCAGGTCACAACAGTGCGATCTGTGTCTCTTCAGCTTCTTATATCAACTTTGAAGGTCCTCAGAATGATAACTATCTGGTTACACCGGAGCTTTCTCTTCCTGGCGGAGGAACGCTTACTTTCTGGGTATGTGCACAAGATGCCAATTATGCATCAGAGCACTATGCCGTGTACGCATCTTCTACGGGTAACGACGCTTCCAACTTCGCCAACGCTTTGTTGGAAGAAGTGCTGACGGCCAAGACAGTTGTTACGGCACCTGAAGCCATTCGTGGTACTCGTGCTCAGGGCACCTGGTATCAAAAGACGGTACAGTTGCCTGCGGGTACTAAGTATGTTGCCTTCCGTCACTTCGGCTGTACGGACTTCTTCTGGATCAACCTTGATGATGTTGTAATCACTTCAGGGAACGCTCCGTCTTACACCTATACGATCTATCGTAATAATACACAGATAGCATCAGGCGTAACGGAGACTACTTACCGAGATCCGGACTTGGCTACCGGTTTTTACACGTACGGTGTAAAGGTTGTTTACCCGAACGGAGAATCAGCTATCGAAACTGCTACGTTGAATATCACTTCGTTGGCAGACGTAACGGCTCAGAAGCCTTACACGCTGACAGTTGTAGGAAAGACGATCACGGTAACTTGCCAAGGCGAAGCTATGATCTACGACATGAACGGTCGTCGTCTGGCAGCGGGTCGCAACACGGTTGTTTACACGGCTCAGGGCGGCCACTATGCAGTCATGGTTGTCGTTGACGGCAAGTCTTACGTAGAGAAACTCGCTGTAAAG","5.10","-33.45","187827","MRKLLLLIAASLLGVGLYAQSAKIKLDAPTTRTTCTNNSFKQFDASFSFNEVELTKVETKGGTFASVSIPGAFPTGEVGSPEVPAVRKLIAVPVGATPVVRVKSFTEQVYSLNQYGSEKLMPHQPSMSKSDDPEKVPFVYNAAAYARKGFVGQELTQVEMLGTMRGVRIAALTINPVQYDVVANQLKVRNNIEIEVSFQGADEVATQRLYDASFSPYFETAYKQLFNRDVYTDHGDLYNTPVRMLVVAGAKFKEALKPWLTWKAQKGFYLDVHYTDEAEVGTTNASIKAFIHKKYNDGLAASAAPVFLALVGDTDVISGEKGKKTKKVTDLYYSAVDGDYFPEMYTFRMSASSPEELTNIIDKVLMYEKATMPDKSYLEKVLLIAGADYSWNSQVGQPTIKYGMQYYYNQEHGYTDVYNYLKAPYTGCYSHLNTGVSFANYTAHGSETAWADPLLTTSQLKALTNKDKYFLAIGNCCITAQFDYVQPCFGEVITRVKEKGAYAYIGSSPNSYWGEDYYWSVGANAVFGVQPTFEGTSMGSYDATFLEDSYNTVNSIMWAGNLAATHAGNIGNITHIGAHYYWEAYHVLGDGSVMPYRAMPKTNTYTLPASLPQNQASYSIQASAGSYVAISKDGVLYGTGVANASGVATVSMTKQITENGNYDVVITRSNYLPVIKQIQVGEPSPYQPVSNLTATTQGQKVTLKWEAPSAKKAEGSREVKRIGDGLFVTIEPANDVRANEAKVVLAADNVWGDNTGYQFLLDADHNTFGSVIPATGPLFTGTASSNLYSANFEYLIPANADPVVTTQNIIVTGQGEVVIPGGVYDYCITNPEPASGKMWIAGDGGNQPARYDDFTFEAGKKYTFTMRRAGMGDGTDMEVEDDSPASYTYTVYRDGTKIKEGLTATTFEEDGVAAGNHEYCVEVKYTAGVSPKVCKDVTVEGSNEFAPVQNLTGSSVGQKVTLKWDAPNGTPNPNPNPNPNPGTTLSESFENGIPASWKTIDADGDGHGWKPGNAPGIAGYNSNGCVYSESFGLGGIGVLTPDNYLITPALDLPNGGKLTFWVCAQDANYASEHYAVYASSTGNDASNFTNALLEETITAKGVRSPKAIRGRIQGTWRQKTVDLPAGTKYVAFRHFQSTDMFYIDLDEVEIKANGKRADFTETFESSTHGEAPAEWTTIDADGDGQGWLCLSSGQLDWLTAHGGSNVVSSFSWNGMALNPDNYLISKDVTGATKVKYYYAVNDGFPGDHYAVMISKTGTNAGDFTVVFEETPNGINKGGARFGLSTEANGAKPQSVWIERTVDLPAGTKYVAFRHYNCSDLNYILLDDIQFTMGGSPTPTDYTYTVYRDGTKIKEGLTETTFEEDGVATGNHEYCVEVKYTAGVSPKKCVNVTVNSTQFNPVQNLTAEQAPNSMDAILKWNAPASKRAEVLNEDFENGIPASWKTIDADGDGNNWTTTPPPGGSSFAGHNSAICVSSASYINFEGPQNDNYLVTPELSLPGGGTLTFWVCAQDANYASEHYAVYASSTGNDASNFANALLEEVLTAKTVVTAPEAIRGTRAQGTWYQKTVQLPAGTKYVAFRHFGCTDFFWINLDDVVITSGNAPSYTYTIYRNNTQIASGVTETTYRDPDLATGFYTYGVKVVYPNGESAIETATLNITSLADVTAQKPYTLTVVGKTITVTCQGEAMIYDMNGRRLAAGRNTVVYTAQGGHYAVMVVVDGKSYVEKLAVK","1939824 1944449 [Bad Olap 2080 268 0]","Porphypain is thought to possess both Arg-X and Lys-X proteinase activity in strain W12.(Barkocy-Gallagher et al.). Slakeski et al. report that this protein is a polyprotein consisting (after postranslational modification) of prtK48, the Lys-specific cysteine proteinase, and three sequence related adhesins, PrtK39, PrtK15 and PrtK44 in strain W50. Both sequences are 1732 amino acids. The sequence herein, 1542 amino acids, is from strain W83.Han et al. (U68468) characterize the first 363 amino acids to be protease whereas the next 1090 to be hemagglutinin (hagD).Gene nomenclature and strains (from Lamont and Jenkinson): kgp (HG66), prtK(W50), prtP(W12).Veith et al. 2002 identified this protein by two-dimensional gel electrophoresis and peptide mass fingerprinting of outer membranes prepared from strain W50. They present the following results: Based on signal peptide sequence comparisons to PG0626, PG0627, PG1592, PG1840, PG0836, PG0023, PG1893, the mature N-terminus of this protein is predicted to be pyroglutamate. RgpA, Kgp and HagA were identified as fully processed domains. The N- and C-termini of many of these domains were identified by mass spectrometry and or N-terminal sequence analysis. It was found that gaps existed between many of the domains. The proposed domain structure of Kgp is as follows: Kgp signal peptide (1-19), Kgp pro-domain (20-228), Kgp48 (229-710), Kgp39 (738-1099), Kgp15 (1157-1275), Kgp14 (1292-1424), Kgp13 (1427-1546), Kgp20 (1548-1732).The T1a protein, PG0581, PG0582, is virtually identical to the C-terminal half of PrtK.For the Arg-X proteinases, see PG1768 and PG0461.TIGR ID: PG1844","porphypain polyprotein; lys-X proteinase/hemagglutinin","Extracellular","This sequence corresponds to gi:3869077 in Genbank.","
InterPro
IPR000977
Family
ATP-dependent DNA ligase
PS00697\"[1149-1157]?DNA_LIGASE_A1
InterPro
IPR001769
Family
Peptidase C25, gingipain
PF01364\"[231-598]TPeptidase_C25
InterPro
IPR003961
Domain
Fibronectin, type III
SM00060\"[945-1073]T\"[1398-1649]TFN3
InterPro
IPR005536
Domain
Peptidase C25, C-terminal ig-like region
PF03785\"[600-680]TPeptidase_C25_C
InterPro
IPR011628
Domain
Cleaved adhesin
PF07675\"[982-1150]T\"[1159-1330]T\"[1427-1598]TCleaved_Adhesin
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.1460\"[354-597]Tno description
signalp\"[1-21]?signal-peptide


","No hit to the COGs database.","***** PF01364 (Peptidase family C25) with a combined E-value of 9.5e-125. PF01364B 709-716 PF01364C 717-770 PF01364D 793-830 PF01364E 846-896 PF01364F 916-969","Residues 1100-1132 are 84% similar to a (PROTEASE PRTH EC 3.4.22.-) protein domain (PD125301) which is seen in PRTH_PORGI.Residues 1338-1393 are identical to a (PROTEASE PRECURSOR SIGNAL THIOL HEMAGGLUTININ REPEAT) protein domain (PD002028) which is seen in P72196_PORGI.Residues 514-673 are identical to a (CYSTEINE PROTEASE LYS-GINGIPAIN) protein domain (PD011535) which is seen in O07442_PORGI.Residues 18-224 are identical to a (PROTEASE CYSTEINE PRECURSOR THIOL) protein domain (PD005390) which is seen in Q51817_PORGI.Residues 1394-1476 are identical to a (PROTEASE PRECURSOR SIGNAL HEMAGGLUTININ THIOL REPEAT) protein domain (PD001858) which is seen in P72196_PORGI.Residues 444-513 are identical to a (PROTEASE PROTEINASE CYSTEINE PRECURSOR) protein domain (PD007636) which is seen in O07442_PORGI.Residues 1327-1386 are 90% similar to a (PROTEASE THIOL REPEAT PRECURSOR) protein domain (PD013956) which is seen in Q51839_PORGI.Residues 243-443 are identical to a (PROTEASE THIOL CYSTEINE PRECURSOR) protein domain (PD005006) which is seen in O52050_PORGI.","","","Thu Jun 14 11:29:08 MDT 2001","Thu Jun 14 11:29:08 MDT 2001","Thu Jun 14 11:29:08 MDT 2001","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","Thu Jun 14 11:29:08 MDT 2001","Thu Jun 14 11:29:08 MDT 2001","","Thu Feb 7 11:44:18 2002","Thu Dec 7 14:44:11 MST 2000","Mon Mar 14 08:41:01 2005","Thu Dec 7 09:33:41 MST 2000","Thu Mar 29 15:47:46 MST 2001","Thu Mar 29 15:47:46 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1605 is similar to PG1768, PG1602, PG1164, PG0461, PG1606, PG0376, PG1922, and PG0375, in order of decreasing similarity. Residues 6-142 are 54% similar to residues 10-1408 of PG1768, a predicted gingipain R1 sequence (an arginine-specific cysteine proteinase); near-identity is observed for the C-terminal halves of these proteins. Residues 883-1476 are 87% similar to residues 1317-1908 of PG1602, a predicted HAGA protein. Thus the C-terminal portions of PG1605 and PG1768 are similar to this region of HAGA. The C-terminal portion of PG1605 is virtually identical to the T1a protein, PG0581 and PG0582.","Tue Jun 5 10:49:29 MDT 2001","Mon Mar 14 08:35:28 2005","-42% similar to PDB:1CVR CRYSTAL STRUCTURE OF THE ARG SPECIFIC CYSTEINE PROTEINASE GINGIPAIN R (RGPB) (E_value = 9.9E_32);-41% similar to PDB:1GW0 CRYSTAL STRUCTURE OF LACCASE FROM MELANOCARPUS ALBOMYCES IN FOUR COPPER FORM (E_value = 9.9E_32);-41% similar to PDB:2IH8 A low-dose crystal structure of a recombinant Melanocarpus albomyces laccase (E_value = 9.9E_32);-41% similar to PDB:2IH9 A high-dose crystal structure of a recombinant Melanocarbus albomyces laccase (E_value = 9.9E_32);-67% similar to PDB:1KFI Crystal Structure of the Exocytosis-Sensitive Phosphoprotein, pp63/Parafusin (phosphoglucomutase) from Paramecium (E_value = 9.9E_32);","","","Residues 231 to 598 (E-value = 1.2e-299) place PG1605 in the Peptidase_C25 family which is described as Peptidase family C25 (PF01364)Residues 600 to 680 (E-value = 2e-54) place PG1605 in the Peptidase_C25_C family which is described as Peptidase family C25, C terminal ig-like domain (PF03785)","Mon Mar 14 08:35:28 2005","0","Thu Feb 7 17:07:19 2002","See: Proteases/Hemagglutinin Analysis.

Sato K, Sakai E, Veith PD, Shoji M, Kikuchi Y, Yukitake H, Ohara N, Naito M, Okamoto K, Reynolds EC, Nakayama K.Identification of a New Membrane-associated Protein That Influences Transport/Maturation of Gingipains and Adhesins of Porphyromonas gingivalis.J Biol Chem. 2005 Mar;280(10):8668-77.PMID: 15634642Veith PD, Chen YY, Reynolds EC.Porphyromonas gingivalis RgpA and Kgp proteinases and adhesins are C terminally processed by the carboxypeptidase CPG70.Infect Immun. 2004 Jun;72(6):3655-7.PMID: 15155679O'Brien-Simpson NM, Veith PD, Dashper SG, Reynolds EC. Antigens of bacteria associated with periodontitis.Periodontol 2000. 2004;35:101-34.PMID: 15107060O-Brien-Simpson NM, Veith PD, Dashper SG, Reynolds EC.Porphyromonas gingivalis gingipains: the molecular teeth of a microbial vampire.Curr Protein Pept Sci. 2003 Dec;4(6):409-26.PMID: 14683427Veith PD, Talbo GH, Slakeski N, Dashper SG, Moore C, Paolini RA, Reynolds EC.Major outer membrane proteins and proteolytic processing of RgpA and Kgp of Porphyromonas gingivalis W50.Biochem J. 2002 Apr;363(Pt 1):105-15.PMID: 11903053Slakeski N, Cleal SM, Bhogal PS, Reynolds EC.Characterization of a Porphyromonas gingivalis gene prtK that encodes a lysine-specific cysteine proteinase and three sequence-related adhesins.Oral Microbiol Immunol. 1999 Apr;14(2):92-7.PMID: 10219167","","Mon Mar 14 08:45:13 2005","","1","","","PG1844" "PG1607","1945287","1945640","354","ATGGCATACCAATCCAAGAATACCGATGAGCATGTAACATTTGCAGACGCACTCCTTTCAAAGCGTTATCGCAAAGCACAAAACGACTTCCTCAATCAGGTTGACAGGCTTATCGATTGGCGTCCGATCAGGACGCTGATCAACAAGAAATACACGAAGCGACAAAATGCCATCGGCGCCCCGGCTTATGACGTGATTCTCTTATTCAAGATGTTGCTTCCGAAGACATGGTACAACCTCAGTGATTGTGCTTTGGAGGAGCGCATCAATGATTCAATCACCTTTTCCCGATTCTTGGGGCTATGGAAGAGGTATCTCCCGACCACAGCACCATCAGTCGATTTCGTTCGGCAC","10.50","7.42","13954","MAYQSKNTDEHVTFADALLSKRYRKAQNDFLNQVDRLIDWRPIRTLINKKYTKRQNAIGAPAYDVILLFKMLLPKTWYNLSDCALEERINDSITFSRFLGLWKRYLPTTAPSVDFVRH","1945286 1945639 [Bad Olap 2082 52 0]","TIGR ID: PG1845","ISPG1 fragment (TnpA3-related)","Cytoplasm","PG1607 is partially equivalent to the previously sequenced AJ130872 and AB015879 in GenBANK. Residues 10-117 are 30% similar to the N-terminal portion of the transposase-like protein TnpA3 in Pseudomonas stutzeri (AF039534).","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 12-101 are 97% similar to a (TRANSPOSASE PROTEIN INSERTION ELEMENT) protein domain (PD007264) which is seen in Q9ZAD0_PORGI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Fri Feb 16 12:54:12 MST 2001","Fri Feb 16 12:54:12 MST 2001","Tue Jan 9 16:35:46 MST 2001","","Mon Feb 12 11:21:36 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1607 is similar to other ISPG1 fragments, PG0842, PG0732, PG1159 and is similar to the N-terminal end of complete ISPg1 sequences, PG1622, PG1422, PG1267, PG1062, PG1050, PG0918, PG0740, PG0169, PG1099, PG0499, PG0420, PG0884, and PG0731, all IS1106-related.","Tue Jun 5 10:57:59 MDT 2001","Tue Jun 5 10:57:59 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Jun 5 10:57:59 MDT 2001","","","Hanley,S.A., Aduse-Opoku,J. and Curtis,M.A.A 55-kilodalton immunodominant antigen of Porphyromonas gingivalisW50 has arisen via horizontal gene transferInfect. Immun. 67 (3), 1157-1171 (1999)Maley,J. and Roberts,I.S.Characterisation of IS1126 from Porphyromonas gingivalis W83: a new member of the IS4 family of insertion sequence elementsMicrobiol. Lett. 123 (1-2), 219-224 (1994)Shibata,Y., Hayakawa,M., Takiguchi,H., Shiroza,T. and Abiko,Y.Determination and characterization of the hemagglutinin-associatedshort motifs found in Porphyromonas gingivalis multiple geneproducts. J. Biol. Chem. 274 (8), 5012-5020 (1999)","Knight,A.I., Ni,H., Cartwright,K.A. and McFadden,J.J.Identification and characterization of a novel insertion sequence,IS1106, downstream of the porA gene in B15 Neisseria meningitidis.Mol. Microbiol. 6 (11), 1565-1573 (1992)","Mon Feb 12 11:21:36 MST 2001","Mon Feb 12 11:21:36 MST 2001","1","","","PG1845" "PG1608","1945589","1945915","327","ATGGAAGAGGTATCTCCCGACCACAGCACCATCAGTCGATTTCGTTCGGCACTGACAGAGTTGGGGCTCATGGACAAACTATTGGCGCAGTTTAACAAACAACTTTCCCGCCATCACATTTCGGTCAGGGAAAGGGTGCTTGTCGATGCAAGCCTTGTGGAGATACGGAGCACCATCGAACGCACCTTTGGCAGTATTCGCCGGTGGTTTCATGGCGGACGATGTCGATACCGGGGACTTGCCAAGACCCATACTCAAAACATTCTTGAAAGCATCGCCTTTAATTTATACAGAACCCCGGGGATAATTATGTCCTCATCTCTAGGA","11.20","7.14","12484","MEEVSPDHSTISRFRSALTELGLMDKLLAQFNKQLSRHHISVRERVLVDASLVEIRSTIERTFGSIRRWFHGGRCRYRGLAKTHTQNILESIAFNLYRTPGIIMSSSLG","1945588 1945914 [Shorter 2081 52 99]","Member of the IS5 family of elements. A fragment.NO TIGR ID corresponds to this gene.","ISPg1 fragment","Cytoplasm","PG1608 is equivalent in part to the previously sequenced IS1126-related transposase AB019363 in GenBANK. No similarities to sequences not found in P.gingivalis.","
InterPro
IPR002559
Domain
Transposase, IS4-like
PF01609\"[55-96]TTransposase_11


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 51-109 are 96% similar to a (TRANSPOSASE ORF7 INSERTION SEQUENCE IS1126-LIKE GENE) protein domain (PD187845) which is seen in Q9ZNB4_PORGI.Residues 8-54 are 97% similar to a (TRANSPOSASE ORF7 INSERTION SEQUENCE) protein domain (PD187846) which is seen in Q9ZA61_PORGI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Fri Feb 16 15:47:57 MST 2001","Wed Feb 14 12:24:14 MST 2001","Fri Feb 16 15:47:57 MST 2001","Tue Jan 2 14:28:27 MST 2001","","Wed Feb 14 12:23:58 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1608 is similar to mid-portions of PG1919, PG1798, PG1230, PG0756, PG0689, PG0044, PG0499, PG0420, PG1895, PG1215, PG0839, PG1665, PG1755, PG1662, PG1422, PG1267, PG1184, PG1087, PG1062, PG1050, PG0918, PG0763, PG0740, PG0686, PG0169, PG0842, PG0732, PG0883, PG1231, PG0730, PG0884, PG0731, all ISPg1-related transposases. In particular, it is most similar to PG1159, a fragment.","Fri Feb 16 15:47:57 MST 2001","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","Hanley,S.A., Aduse-Opoku,J. and Curtis,M.A.A 55-kilodalton immunodominant antigen of Porphyromonas gingivalisW50 has arisen via horizontal gene transferInfect. Immun. 67 (3), 1157-1171 (1999)Maley,J. and Roberts,I.S.Characterisation of IS1126 from Porphyromonas gingivalis W83: a new member of the IS4 family of insertion sequence elementsMicrobiol. Lett. 123 (1-2), 219-224 (1994)Shibata,Y., Hayakawa,M., Takiguchi,H., Shiroza,T. and Abiko,Y.Determination and characterization of the hemagglutinin-associatedshort motifs found in Porphyromonas gingivalis multiple geneproducts. J. Biol. Chem. 274 (8), 5012-5020 (1999)","","Wed Feb 14 12:23:58 MST 2001","","1","","","" "PG1609","1946700","1946323","378","ATGAAAAAGGTAATCAACACGAAGAATGCACCGGCCGCAATCGGACCATACAGCCAGGCTATCCTGATGGGTAATATGCTCTATGCTTCCGGACAATTAGGCCTTGATCCTACCACAGGGAACTTTGTACCCGGCGGAGTAACAGAGCAGACCGAACAAGTATTCAAGAACATTCGAGCTATCCTCGAAGAAGCAGGACTCACAATCGCCAATGTGGTAAAGACCACTTGTTTTTTGGCCGATATGAGTGATTTTGCAGCGATGAATGCCGTTTATGAGAAACAATTCACCGGCGACTTTCCGGCTCGTTCTGCTGTTGCCGTTAAGACCCTGCCCAAGAATGGATTGGTGGAAATAGAGATCATAGCGATCAAAGAC","5.20","-1.06","13423","MKKVINTKNAPAAIGPYSQAILMGNMLYASGQLGLDPTTGNFVPGGVTEQTEQVFKNIRAILEEAGLTIANVVKTTCFLADMSDFAAMNAVYEKQFTGDFPARSAVAVKTLPKNGLVEIEIIAIKD","1946699 1946322","TIGR ID: PG1847","conserved hypothetical protein (protein translation inhibitor) (percholric acid soluble)","Periplasm, Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 1-125 have 53% similarity to AF000167, C. hircus 14.3 kDa perchloric acid soluble protein, residues 1-125 have 52% similarity to U50631, M. musculus heat-responsive protein, residues 1-123 have 56% similarity to AE002080, D. radiodurans protein translation inhibitor, putative.","
InterPro
IPR006056
Family
YjgF-like protein
TIGR00004\"[2-125]TYjgF-like
PS01094\"[101-121]TUPF0076
InterPro
IPR006175
Domain
Endoribonuclease L-PSP
PF01042\"[7-125]TRibonuc_L-PSP
InterPro
IPR013813
Domain
Endoribonuclease L-PSP/chorismate mutase-like
G3DSA:3.30.1330.40\"[1-126]TEndoribo_LPSP/chorism_mut-like
SSF55298\"[1-123]TYjgF/chorismate_mutase-like
InterPro
IPR014420
Family
Translation initiation inhibitor, TdcF type
PIRSF004689\"[1-126]TTdcF
noIPR
unintegrated
unintegrated
PTHR11803\"[5-126]TPTHR11803


","BeTs to 9 clades of COG0251COG name: Putative translation initiation inhibitorFunctional Class: JThe phylogenetic pattern of COG0251 is ---kYqvCEbRHuj-------Number of proteins in this genome belonging to this COG is 1","***** IPB000543 (Uncharacterized protein family UPF0076) with a combined E-value of 1.2e-61. IPB000543A 10-37 IPB000543B 50-96 IPB000543C 101-123","Residues 5-124 are 55% similar to a (PROTEIN INTERGENIC REGION TRANSLATIONAL) protein domain (PD002429) which is seen in O97509_CAPHI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Mar 22 13:58:33 MST 2001","Thu Mar 22 13:58:33 MST 2001","Thu Mar 22 13:58:33 MST 2001","Tue Mar 6 13:16:34 MST 2001","Tue Mar 6 13:16:34 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 6 13:16:34 MST 2001","-71% similar to PDB:1NQ3 Crystal structure of the mammalian tumor associated antigen UK114 (E_value = 2.7E_34);-70% similar to PDB:1QAH CRYSTAL STRUCTURE OF PERCHLORIC ACID SOLUBLE PROTEIN-A TRANSLATIONAL INHIBITOR (E_value = 1.7E_33);-71% similar to PDB:2DYY Crystal structure of putative translation initiation inhibitor PH0854 from Pyrococcus horikoshii (E_value = 3.9E_33);-71% similar to PDB:1QD9 Bacillus subtilis YABJ (E_value = 1.1E_32);-70% similar to PDB:1ONI Crystal structure of a human p14.5, a translational inhibitor reveals different mode of ligand binding near the invariant residues of the Yjgf/UK114 protein family (E_value = 2.5E_32);","","","Residues 7 to 125 (E-value = 2.6e-66) place PG1609 in the Ribonuc_L-PSP family which is described as Endoribonuclease L-PSP (PF01042)","Thu Mar 22 13:58:33 MST 2001","34541458","","","","","","1","","","PG1847" "PG1610","1947475","1946729","747","ATGAAGAATGACAAAATGATATTCGGCCTGCACTCCATATCGGAGGCTTTCGAAGCAGGCAAAGAGATCGACAAGATCTTTATTCGGCGTGGTCTCAAAACTGAGCAGACCGAAGCAATCATTCGAGAGGCCGTAGAGCGGTGCGTACCGGTGATGCATGTACCGATAGAGAAGCTGGACAGGCTTACCTCCAAGAATCACCAAGGGGTGGTGGCCATTCTTTCGGCTATCGAATATACCCGTTTGGATCAACTCATGCCGATGCTCTATGAGGAGGGTAAGGCACCCTTCCTCTTGCTACTCGATGGTATCACCGATGTGCGGAACTTCGGGGCTATTGCTCGTACGGCGGAGTGTGCAGGGGTAGATGCCATCATCATTCCCGAAAGAGGAAGCGTTTCGGTAGGAGGAGATGCTATCAAGACCTCTGCCGGAGCTTTGCATCGTATTCCGGTTTGTCGCGTGACTTCCATTCCCGGAGCCATCCGCAGCCTGCAAGAATACGGTATACGCATAGTCGCTGCTTCGGAGAAGGCTGCAGATCTATATACCGATGTACCCATGAAGCTGCCTTTGGGTATAGTCATGGGGGCGGAGGATGTCGGGCCATCACCTGATACGCTTAGGATGGCCGATGGCATAGTAGCTATTCCGCAGATGGGGGCTATAGGCTCATTGAACGTCTCCGTTGCGGCCGGCATTGTTATTTACGAAGTAGTGCGACAGCAAAGACTGCAATCATCAAAT","6.20","-2.17","26818","MKNDKMIFGLHSISEAFEAGKEIDKIFIRRGLKTEQTEAIIREAVERCVPVMHVPIEKLDRLTSKNHQGVVAILSAIEYTRLDQLMPMLYEEGKAPFLLLLDGITDVRNFGAIARTAECAGVDAIIIPERGSVSVGGDAIKTSAGALHRIPVCRVTSIPGAIRSLQEYGIRIVAASEKAADLYTDVPMKLPLGIVMGAEDVGPSPDTLRMADGIVAIPQMGAIGSLNVSVAAGIVIYEVVRQQRLQSSN","1947474 1946728","TIGR ID: PG1848","rRNA/tRNA methyltransferase","Cytoplasm","Numerous hits to tRNA/rRNA methyltransferases with gapped BLAST;e.g. residues 7-243 are 32% similar to tRNA/rRNA methyltransferase(Z99104) of Bacillus subtilis, residues 5-243 are 32% similar to tRNA/rRNA methlytransferase (U32767) of Haemophilus influenzae, residues 1-247 are 33% similar to putative RNA methylase (AL162755) of Neisseria meningtitidis, residues 6-247 are 25% similar to rRNA methylase (F71519) of Chlamydia trachomatis.","
InterPro
IPR001537
Domain
tRNA/rRNA methyltransferase, SpoU
PD001243\"[95-242]TSpoU_mtfrase
PF00588\"[96-237]TSpoU_methylase
InterPro
IPR004441
Family
RNA methyltransferase TrmH, group 3
TIGR00186\"[3-243]TrRNA_methyl_3
InterPro
IPR013123
Domain
RNA 2-O ribose methyltransferase, substrate binding
PF08032\"[6-80]TSpoU_sub_bind
noIPR
unintegrated
unintegrated
G3DSA:3.30.1330.30\"[5-78]TG3DSA:3.30.1330.30
G3DSA:3.40.1280.10\"[79-244]TG3DSA:3.40.1280.10
PTHR12029\"[50-244]TPTHR12029
PTHR12029:SF7\"[50-244]TPTHR12029:SF7
SSF55315\"[1-77]TSSF55315
SSF75217\"[68-247]TSSF75217


","BeTs to 14 clades of COG0566COG name: rRNA methylasesFunctional Class: JThe phylogenetic pattern of COG0566 is a---YQvCEBRHujgpOLinxNumber of proteins in this genome belonging to this COG is 3","***** PF00588 (SpoU rRNA Methylase family) with a combined E-value of 3.5e-20. PF00588A 99-117 PF00588B 217-242","Residues 99-242 are 41% similar to a (PROTEIN METHYLTRANSFERASE TRANSFERASE) protein domain (PD001243) which is seen in YJFH_ECOLI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Fri Jun 1 12:00:06 MDT 2001","Wed Apr 19 15:03:13 MDT 2000","Thu Dec 21 13:39:22 2000","Thu Mar 22 14:05:19 MST 2001","Thu Mar 22 14:05:19 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 55-241 are 28% similar to PG0025, a predicted RNA methylase SpoU family. Similarities are also seen to PG0672, a predicted rRNA methylase; RNA methyltransferase.","Thu Mar 22 14:05:19 MST 2001","Thu Mar 22 14:05:19 MST 2001","-54% similar to PDB:1GZ0 23S RIBOSOMAL RNA G2251 2'O-METHYLTRANSFERASE RLMB (E_value = 9.0E_32);-47% similar to PDB:1IPA CRYSTAL STRUCTURE OF RNA 2'-O RIBOSE METHYLTRANSFERASE (E_value = 4.5E_15);-52% similar to PDB:1V2X TrmH (E_value = 1.4E_13);-50% similar to PDB:1ZJR Crystal Structure of A. aeolicus TrmH/SpoU tRNA modifying enzyme (E_value = 3.3E_10);-40% similar to PDB:1X7O Crystal structure of the SpoU Methyltransferase AviRb from Streptomyces viridochromogenes (E_value = 4.4E_10);","","","Residues 96 to 237 (E-value = 9.2e-33) place PG1610 in the SpoU_methylase family which is described as SpoU rRNA Methylase family (PF00588)","Thu Mar 22 14:05:19 MST 2001","34541459","","","","","","1","","","PG1848" "PG1611","1949127","1947475","1653","ATGTTAGCCTCTTTGCATATTGCCAACTACGTTCTGATCGACCGGCTTGATATTGATTTTGCCCCTCATTTTTCTGTGATCACAGGGGAAACCGGTGCAGGAAAAAGTATTCTATTAGGTGCTTTGGGACTGCTTGTCGGGGGGCGTGCCGATACTTCAGCTATTGCACCCGGTACAGATCGCTGCATAGTAGAGGGGCGTTTTACCGGATTCGTTCCGGAGATGAAAGCCGTATTGGATCGCTACGACTTGGATTTCGATCCGGACGAATGCACTATCCGTCGCGAAATATCCTCCAAAGGCAAAAGTCGCGCTTTCGTAAATGATACGCCTGCTCCATTGACGGCTCTTCGCGAGCTGGCCGACTTCCTGATCGACATCCATTCTCAGCACAAAAATCTCCTGCTCGGCGACAGTTTGTTTCAGCTCAATGTGCTGGATGCATATAGCGGAAAACCCGACTTATATGCCCACTACAGCAAAGCTTACCGGGTGTATGCCGAAAGAAAACAAAAGTTGGAAGACCTTCGTAAGGCAGCCGCTGCGACAGCGTCGGAGTATGACTATTGGCAGTTTCGTTTTGAGCAGTTGGATAAGGCCGGTCTCGAATCGGGAGAAGAAGCTCGTTTGCAAGAAGAACAGGCTATGCTGACGCATGCCTTGGACATTAAAAGAGAGCTGGGGCATTCCTATAGCCTTCTCTCCGACGATGAGAGAGGACTACTGTCGGGTCTGAACAAAGTAGAAGATGCTTTGGCCACCATAGAGAGCTATTATCCCGACTCGGCTTCTTTTCGGCAGCGAGTACGCGATGTTCGAATAGAGTTGGCTGATATTGCATCGGATTTGGGGCGGCGTTCGGACGATGTCTCCTACGAGCCGGAAAGATTGAATGCTGTGACGGATCGGCTGGACGAAATTCTCTCGCTCCTGCATCGTTACAATGCCGATAGCAGCGATGCTCTCATTGCCATACGAGACGATTTGGCCGAACGCCTCTCAAGGATCAGTACCGATGAAGAAGAGATAAGTCGACTTGAGCAAGAAGTCTTGGCCTTTTATAAAGAGATTGAGGCCCAAGCATCGTTGCTGACCGAAGAACGCATTCGGGCAGCCTCCGCTTTGGAAACTTCTTTGTGCGAATCCTTACGCAAGCTCAATATGCCTCATGTCCGTTTTGTCGTTGATATTCGCTCGACAGAATACGGCCCTCACGGAGCAGACAAGGTCGTTTTTTTGTTTTCGGCGAATAAGCAGATGGAGCCGGAGCCGGTATCGGAGATTGCCTCAGGAGGAGAGATTGCTCGCCTGATGTTGTGTCTGAAAGCTCTCATTGCAGACAAGCGTTCTTTGCCGGCCATCGTTTTCGATGAGATAGATACCGGCGTATCGGGTGAAGTGGCTGACCGTATGGGAGAGATTATGGCTCATATGGGACAAGGTATGCAAGTGCTCGCCATCACGCATCTGCCCCAAATAGCAGCCCGAGGGGAACGGCACTACTTTGTCTATAAAGATGAAACAGGCGAACGGGCACGCACCTTCATTCGTGAATTGACTCCCGAAGAGCGAATACGAGAGATAGCCCGTATGCAAAGCGGAAACAACCTGACGGATGTGGCCTTGGCCGCAGCCAAAGAGCTTTTAGCAAGA","4.80","-24.97","61593","MLASLHIANYVLIDRLDIDFAPHFSVITGETGAGKSILLGALGLLVGGRADTSAIAPGTDRCIVEGRFTGFVPEMKAVLDRYDLDFDPDECTIRREISSKGKSRAFVNDTPAPLTALRELADFLIDIHSQHKNLLLGDSLFQLNVLDAYSGKPDLYAHYSKAYRVYAERKQKLEDLRKAAAATASEYDYWQFRFEQLDKAGLESGEEARLQEEQAMLTHALDIKRELGHSYSLLSDDERGLLSGLNKVEDALATIESYYPDSASFRQRVRDVRIELADIASDLGRRSDDVSYEPERLNAVTDRLDEILSLLHRYNADSSDALIAIRDDLAERLSRISTDEEEISRLEQEVLAFYKEIEAQASLLTEERIRAASALETSLCESLRKLNMPHVRFVVDIRSTEYGPHGADKVVFLFSANKQMEPEPVSEIASGGEIARLMLCLKALIADKRSLPAIVFDEIDTGVSGEVADRMGEIMAHMGQGMQVLAITHLPQIAARGERHYFVYKDETGERARTFIRELTPEERIREIARMQSGNNLTDVALAAAKELLAR","1949126 1947474","TIGR ID: PG1849","DNA recombination and repair protein recN","Cytoplasm","Numerous significant hits to DNA recombination and repair proteins in gapped BLAST; e.g. residues 1-549 have 31% simialrity to AP001516, B. halodurans DNA repair and genetic recombination protein recN, residues 1-549 have 31% similarity to AE004890, P. aeruginosa DNA repair protein RecN, residues 1-549 have 27% similarity to U32692, H. influenzae DNA repair protein (recN).This sequence is similar to BT1361.","
InterPro
IPR003395
Domain
SMC protein, N-terminal
PF02463\"[1-512]TSMC_N
InterPro
IPR004604
Family
DNA repair protein RecN
TIGR00634\"[1-551]TrecN
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[14-188]T\"[430-535]TG3DSA:3.40.50.300
SSF52540\"[2-507]TSSF52540


","BeTs to 8 clades of COG0497COG name: ATPases involved in DNA repairFunctional Class: LThe phylogenetic pattern of COG0497 is -----q-cebrhuj---l--xNumber of proteins in this genome belonging to this COG is 1","***** IPB001238 (RecF protein) with a combined E-value of 7.9e-06. IPB001238A 10-48 IPB001238C 396-421","Residues 1-150 are 36% similar to a (PROTEIN ATP-BINDING DNA REPAIR CHROMOSOME COILED COIL) protein domain (PD000596) which is seen in RECN_ECOLI.Residues 163-397 are 26% similar to a (RECN DNA REPAIR PROTEIN) protein domain (PD008454) which is seen in O83456_TREPA.Residues 161-401 are 21% similar to a (PROTEIN COILED COIL REPEAT FILAMENT HEPTAD PATTERN CHAIN) protein domain (PD000002) which is seen in O66834_AQUAE.Residues 406-550 are 40% similar to a (PROTEIN RECN DNA REPAIR) protein domain (PD033003) which is seen in RECN_ECOLI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Mar 6 13:27:33 MST 2001","Thu Dec 4 13:31:24 2003","Thu Mar 22 14:17:11 MST 2001","Tue Mar 6 13:27:33 MST 2001","Tue Mar 6 13:27:33 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 6 13:27:33 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Mar 22 14:17:11 MST 2001","34541460","","","","","","1","","","PG1849" "PG1612","1950050","1949145","906","ATGAGAAGGAGATTGTGGTGGGGCCTGTGGATCTGCCTGTTTTTCTATACGGCCTCTGCTGTAAGTCAGGAGTTGAATGCCAAGGTAACTATCAATAGCGAACGTCTCGGCAGTAATGCCAATGCGGAGACATTCAAGACATTGGAGCGTCAGCTCTCAGATCTCCTCAACCTGACTCGATGGACAACGGCCACATTCAGTTTTGCAGAGCGTATCGACTGCACCTTTTCCATCAACCTTACCGAAGTGAAAGACGAAAGTCAATACAAGGCCGAACTCTTTGTTACTTCTCGTCGCCCTATTTACAATTCCTCCTATTTTTCTCCTCAGCTTATTTGGCGAGATCAGGAACTGAACTTCGAATACAACCAGTTCGATCCCATCGAATATAATGAGACGGATCTGCAAAGTAATCTGGTTGCCTCCGTCGTATTCTATGCCTACTTTATATTGGCGATGGATTTTGACAGCTTCAGCCCTTTGGGAGGCAATTCGGCCCGTTCTATGATGCGTCAGATCGTAGCCAGAGCACAGGCCAAACAAGACTGGAGCGGCTGGAAAGCTTTTGAGAGTACCAAGAATCGCTATGCCCTTGCCGAGGCTATGAATGATGCCGAATTGGAGACTTTGCGCCGGTTTTGGTATGATTATCACCGACGAGCATTGGATGAAATGGTCGGCAATCCCAATCGTGGGCGCACTACGGTATTAGAGCTGTTGCCTCAGCTGGAAGCTGTTTACAAGGTACGTCCCATGTCGCCACTGCTTTCCATCTTTGCGGCTGTCAAGCTGGATGAGATCGTGAATATATTGTCGAAAGCCAATGCTTCGGAAAAGCAGGATGCGTATAAAGTACTGAACAAGGTATTTCCAACTGAAGGAAACAAGCTGAATCCGCTCAAAAAA","8.10","1.16","35076","MRRRLWWGLWICLFFYTASAVSQELNAKVTINSERLGSNANAETFKTLERQLSDLLNLTRWTTATFSFAERIDCTFSINLTEVKDESQYKAELFVTSRRPIYNSSYFSPQLIWRDQELNFEYNQFDPIEYNETDLQSNLVASVVFYAYFILAMDFDSFSPLGGNSARSMMRQIVARAQAKQDWSGWKAFESTKNRYALAEAMNDAELETLRRFWYDYHRRALDEMVGNPNRGRTTVLELLPQLEAVYKVRPMSPLLSIFAAVKLDEIVNILSKANASEKQDAYKVLNKVFPTEGNKLNPLKK","1950049 1949144","TIGR ID: PG1850","conserved hypothetical protein","Outer membrane, Periplasm","This sequence corresponds to gi:34397778 in Genbank.Its nearest neighbor in the NR database is gi:48853608 from Cytophaga hutchinsonii.","
noIPR
unintegrated
unintegrated
signalp\"[1-20]?signal-peptide
tmhmm\"[5-23]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Mar 8 15:45:45 2005","Tue Mar 8 15:45:45 2005","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 8 15:45:45 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541461","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Tue Mar 8 15:45:45 2005","","1","","","PG1850" "PG1613","1951261","1950050","1212","ATGAAATCATCTTTGGCCGGTAAGCACATCGTCCTCGGTGTCACGGGGAGTATCGCAGCCTACAAGGCTGCCGTTTTGACCCGCCTGCTCATCAAAAAGGAGGCTGAAGTGCAAATAGTCATTACTCCTGCCGGCAAGGAGTTCATTACTCCCATCACCCTCTCGGCTCTGACTTCCAAGCCTGTCATCAGCGAATTTTTCTCCGGACGGGATGGTACATGGAACAGCCATGTGGATCTCAGTCTCTGGGCGGATGCTATGCTGATAGCTCCGGCCACAGCCTCTACGATAGGCAAGATGGCACATGGCATAGCCGACAATATGTTGGTAACCACTTACCTTTCCGCCAAGGCTCCCGTATTCGTGGCTCCGGCTATGGATTTGGACATGTTCCGACATCCGAGTACGCAGCACAATATGGAGATACTACGCTCTTATGGCAATCATATCATAGAGCCGGGTGAAGGCGAATTGGCCAGTCATTTGGTAGGAAAGGGGCGGATGGAAGAGCCGGAGTGCATTGTGGAGATATTGGAGGCTTTTTTCAAGGAGAACGATTGTAAGCCCCTCCTTGGGAAGAGAGCATTGGTTACAGCCGGCCCTACATACGAGAAACTCGATCCTGTACGTTTTCTCGGCAACTACTCTTCCGGAAGGATGGGCTTCTGCATAGCAGAACGTTTGGCCGAATTGGGGGCTTCGGTTACGCTTGTCACCGGCCCTACCACTATGCAGACAACTGTCGAAGGGATAGACCGTATCGATGTGGAAAGTGCCGTAGAGATGCTCGAAGCCTGTCGGAAACCTTTTGAAAAGGCCGACATAACCGTCTTGTCCGCAGCCGTGGCTGACTATCGTCCGGCAGAGCAGGCAGAGAAAAAGATGAAACGAGAGACCAAGGGCGACTTCGATCTTCGCTTGACTGCTAATCCGGATATAGCGGCTACGCTCGGAGCACTCAAACGTGCAGGACAGCGGTTGGTGGGTTTTGCCTTGGAGACGGACAGTGGGGAGCAAGAGGCTATGCGCAAGATGAAAGCCAAGCACTTGGATGCGATAGTACTGAATTCGCTTTCCGATGCGGGAGCCGGATTTGGAGTAGGTACGAATAAGATCACCATATTCGACAGTGAAGGCCGACCGTCGGACTATCCGCTCAAAAGCAAGGTCGAGGTGGCCGAAGATATTGTGGACTATATAATCGGATTGGGA","5.80","-6.23","43533","MKSSLAGKHIVLGVTGSIAAYKAAVLTRLLIKKEAEVQIVITPAGKEFITPITLSALTSKPVISEFFSGRDGTWNSHVDLSLWADAMLIAPATASTIGKMAHGIADNMLVTTYLSAKAPVFVAPAMDLDMFRHPSTQHNMEILRSYGNHIIEPGEGELASHLVGKGRMEEPECIVEILEAFFKENDCKPLLGKRALVTAGPTYEKLDPVRFLGNYSSGRMGFCIAERLAELGASVTLVTGPTTMQTTVEGIDRIDVESAVEMLEACRKPFEKADITVLSAAVADYRPAEQAEKKMKRETKGDFDLRLTANPDIAATLGALKRAGQRLVGFALETDSGEQEAMRKMKAKHLDAIVLNSLSDAGAGFGVGTNKITIFDSEGRPSDYPLKSKVEVAEDIVDYIIGLG","1951266 1950049","TIGR ID: PG1851","DNA/pantothenate metabolism flavoprotein dfp","Cytoplasm, Inner membrane","Numerous significant hits to DNA/pantothenate metabolism flavoproteins in gapped BLAST; e.g. residues 5-397 have 43% similarity to AP001515, B. halodurans flavoprotein (dfp), residues 7-397 have 43% similarity to AF104227, L. monocytogenes pantothenate metabolism flavoprotein homolog, residues 4-400 have 45% similarity to AE004111, V. cholerae DNA/pantothenate metabolism flavoprotein.Thiss equence is similar to BT1362.","
InterPro
IPR003382
Domain
Flavoprotein
G3DSA:3.40.50.1950\"[8-109]TFlavoprotein
PF02441\"[8-125]TFlavoprotein
SSF52507\"[2-184]TFlavoprotein
InterPro
IPR005252
Family
Bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
TIGR00521\"[5-401]TcoaBC_dfp
InterPro
IPR007085
Domain
DNA/pantothenate metabolism flavoprotein, C-terminal
PF04127\"[190-390]TDFP
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.10300\"[185-401]TG3DSA:3.40.50.10300
PTHR14359\"[14-404]TPTHR14359
PTHR14359:SF6\"[14-404]TPTHR14359:SF6
SSF102645\"[172-403]TSSF102645


","BeTs to 13 clades of COG0452COG name: Flavoprotein involved in panthothenate metabolismFunctional Class: HThe phylogenetic pattern of COG0452 is amtkYqvceBrhuj--o----Number of proteins in this genome belonging to this COG is 1","***** BP02847 (PROTEIN FLAVOPROTEIN METABOLISM DNA/PAN) with a combined E-value of 1.3e-18. BP02847A 77-111 BP02847B 119-128","Residues 77-126 are 62% similar to a (PROTEIN FLAVOPROTEIN METABOLISM) protein domain (PD002847) which is seen in O35033_BACSU.Residues 151-403 are 44% similar to a (METABOLISM FLAVOPROTEIN DNA/PANTOTHENATE) protein domain (PD005411) which is seen in O35033_BACSU.Residues 10-62 are 58% similar to a (METABOLISM FLAVOPROTEIN DNA/PANTOTHENATE) protein domain (PD005600) which is seen in DFP_HAEIN.","","Thu Jun 14 12:19:39 MDT 2001","","Thu Jun 14 12:19:39 MDT 2001","Thu Jun 14 12:19:39 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:19:39 MDT 2001","Thu Jun 14 12:19:39 MDT 2001","","","Wed May 16 18:29:59 MDT 2001","Thu Dec 4 13:33:19 2003","Thu Mar 22 14:23:31 MST 2001","Tue Jun 26 08:43:02 MDT 2001","Tue Jun 26 08:43:02 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Jul 28 17:26:19 2008","-60% similar to PDB:1U7U Phosphopantothenoylcysteine synthetase from E. coli (E_value = 1.4E_33);-60% similar to PDB:1U7W Phosphopantothenoylcysteine synthetase from E. coli, CTP-complex (E_value = 1.4E_33);-60% similar to PDB:1U7Z Phosphopantothenoylcysteine synthetase from E. coli, 4'-phosphopantothenoyl-CMP complex (E_value = 1.4E_33);-60% similar to PDB:1U80 Phosphopantothenoylcysteine synthetase from E. coli, CMP complex (E_value = 1.4E_33);-52% similar to PDB:1MVL PPC decarboxylase mutant C175S (E_value = 6.3E_18);","","","Residues 8 to 125 (E-value = 7.8e-40) place PG1613 in the Flavoprotein family which is described as Flavoprotein (PF02441)Residues 190 to 390 (E-value = 4.5e-25) place PG1613 in the DFP family which is described as DNA / pantothenate metabolism flavoprotein (PF04127)","Thu Dec 4 13:33:19 2003","34541462","","","","","","1","","","PG1851" "PG1614","1952066","1951290","777","ATGAAATTGAATCTGAAAAACCCGCTGATCTTCTTCGACCTCGAAACGACGGGTGTGGATTTGGTACGGGACAGAATCGTCGAAATCTCCATACTGAAAGTCATGCCCGATGGAAGCGAAGAGTGTAAAACAAGGCGTATCAATCCCGAACGCCCTATTCCTCCCGAATCGACAGCCATTCACGGCATTAGGGATGAGGATGTGAAGGACTGTCCGCCATTCCGTTCGGTGGCCAAAAGTCTGGCGCAATGGATAGAAGGGTGTGATTTGGCAGGCTTCAATTCGACGCGATTCGATGTGCCGATGCTGGTGGAGGAGTTCCTCCGTGCCGGAGTGGACATCGACCTCCGCCACAGAAAGCTCATAGACGTTCAGACGATTTTTCATAAGATGGAACCTCGCACATTGGAGGCAGCTACTCGTTTCTATTGTAATAGAACTTTGGAAAATGCGCATTCGGCTGAAGCCGATACGCGTGCTACATACGATGTGTTCAAGGCCCAATTGGATCGTTATGAGGGGACATTGGAGAACGACATGGCTTTCTTGGCCGACTTCTCCCGCCAGTCTCGCAACGTGGACTTTGCCGGCCGATTGGTTTATGACGACAACGATAACGTTATCATCAATTTCGGCAAGTATCGCGGCCGTAAAGCTCTGGATGTATTGCGTACAGATTCCGGTTATTACGGCTGGATCATGGATGCGGATTTTACGCTGAATACAAAGCAAGAATTTACTCGCCTGCGTATGTCTCTGAACAATCCGGAGACCAAA","5.30","-5.21","29885","MKLNLKNPLIFFDLETTGVDLVRDRIVEISILKVMPDGSEECKTRRINPERPIPPESTAIHGIRDEDVKDCPPFRSVAKSLAQWIEGCDLAGFNSTRFDVPMLVEEFLRAGVDIDLRHRKLIDVQTIFHKMEPRTLEAATRFYCNRTLENAHSAEADTRATYDVFKAQLDRYEGTLENDMAFLADFSRQSRNVDFAGRLVYDDNDNVIINFGKYRGRKALDVLRTDSGYYGWIMDADFTLNTKQEFTRLRMSLNNPETK","1952065 1951289","For other pol III sequences, see PG0031, PG0831, PG1615, PG1245.TIGR ID: PG1852","DNA polymerase III epsilon subunit","Cytoplasm","A few weak similarities to pol III epsilon sequences: residues 9-245 are 26% similar to the pol III epsilon sequence from C.trachomatis (CT0261).This sequence is orthologous to CT261.","
InterPro
IPR006055
Domain
Exonuclease
SM00479\"[8-174]TEXOIII
InterPro
IPR012337
Domain
Polynucleotidyl transferase, Ribonuclease H fold
SSF53098\"[6-172]TRNaseH_fold
InterPro
IPR013520
Domain
Exonuclease, RNase T and DNA polymerase III
PF00929\"[9-165]TExonuc_X-T
noIPR
unintegrated
unintegrated
G3DSA:3.30.420.10\"[2-176]TG3DSA:3.30.420.10


","BeTs to 6 clades of COG0847COG name: DNA polymerase III epsilon subunit (3'-5' exonuclease)Functional Class: LThe phylogenetic pattern of COG0847 is a---YQvcEbRHuj---lINxNumber of proteins in this genome belonging to this COG is 3","***** PF00929 (Exonuclease) with a combined E-value of 3.2e-07. PF00929A 10-20 PF00929C 152-165","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Tue Dec 19 15:13:09 MST 2000","Wed May 23 16:56:18 MDT 2001","Tue Dec 19 14:56:42 MST 2000","Wed May 23 16:56:18 MDT 2001","Thu Apr 19 16:55:10 MDT 2001","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Tue Dec 19 14:56:42 MST 2000","Thu Apr 19 16:55:10 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 9 to 165 (E-value = 4.9e-28) place PG1614 in the Exonuc_X-T family which is described as Exonuclease (PF00929)","Thu Apr 19 16:55:10 MDT 2001","34541463","","","","","","1","","","PG1852" "PG1615","1953212","1952082","1131","ATGAAGTTTGAAGTAGCCAGCAACGTCCTGTTGCAACACTTGCAATTGATTGCCCGCGTCATAGCTTCACGCAGTACACTTCCAATTTTGGAGTCTGTACTTTTCGAGCTTGAGGGAGATCAATTACGTCTTACCGCTGCCGATATGGCCAATCGGATGAGTACGGAACTTACCGTGAACAACGTAGGGGGCGAAAACGGTTCTTTCGCCGTTCCCGAGAGGATCTTACTTGAACCACTGAAAGAATTGCCCGATCAGCCGATCTCTTTTGAGATAAATATGGAAACCAAAGCCGCTGAAATAGCATACAGCAACGGGCATTACAGTTTTGTGGTACAGGATGTTTCGACCTATCCGGTGGCAGCTTCTTTGTCTCCCGAAGCAATCGTTTCTATCGTTCCGGCGGAAGCCTTGCTCAGTGGCCTTTCGGCTACGCTCTTTGCTACCAGTCAGGACGAACGCCGGCCGATCATGACAGGGGTCTATCTGGATTTCTTCGAGGACAAGCTTGTTTTCGTAGGCTCGGATGGACAGATCTTGGTGAAGCAGGAGGATGCTAATGTGCAGAGCCGTCGGCGTAGTGCCTTCTGCCTGCCTAGGAAAGCCTGTCTTCTGCTGCGCAATGTTCTGCCCCGACTGGAAGGCGATGTGACACTCACGTATGACAGCAACTATCTCCATATAGAACTTGGCAATTATACGCTCAGAGCACGGTTGCTGGAAGGTCGTTATCCGAATTATAATAGTGTAATACCTACCAGCAATCCTTTCTCGGTGAAAGTGGATCGTGCTCAACTCCTATCCGGAGCCAAGCGCGTATCTATCTTCTCCAATCCGGCTACGAGTATGCTGCGCATGGAGTTTACCCCTGCAGGCATCCGCTTATCGGCTAATGATATAGATTTCTCTGTGGCTGCTGAAGAACATGTGCCGGCAGAATGTCCGGCCGACATCAACATGCGCATCGGATTCAAGTCGGATGTCTTTCAGACAATTCTGCAAGGAATGCCATCGGAAGAAGTGATAATGACTTTGGCTGATCAGACTCGTGCCGGTCTCATACTGCCGGCAGAGAATGCACCGGGGATAAGCCTGTGCAATTTGCTTTTGCCGATGAAGTTGATCGGCGAA","4.70","-12.20","41410","MKFEVASNVLLQHLQLIARVIASRSTLPILESVLFELEGDQLRLTAADMANRMSTELTVNNVGGENGSFAVPERILLEPLKELPDQPISFEINMETKAAEIAYSNGHYSFVVQDVSTYPVAASLSPEAIVSIVPAEALLSGLSATLFATSQDERRPIMTGVYLDFFEDKLVFVGSDGQILVKQEDANVQSRRRSAFCLPRKACLLLRNVLPRLEGDVTLTYDSNYLHIELGNYTLRARLLEGRYPNYNSVIPTSNPFSVKVDRAQLLSGAKRVSIFSNPATSMLRMEFTPAGIRLSANDIDFSVAAEEHVPAECPADINMRIGFKSDVFQTILQGMPSEEVIMTLADQTRAGLILPAENAPGISLCNLLLPMKLIGE","1953361 1952081","For other pol III sequences, see PG0031, PG0831, PG1245, PG1614.TIGR ID: PG1853","DNA polymerase III beta subunit","Cytoplasm","Numerous hits in gapped BLAST to pol III beta chain sequences: residues 1-374 are 26% similar to the beta chain from Pseudomonas aeruginosa (AE004440). This sequence is similar to CT075, a predicted DNA polymerase III beta chain.","
InterPro
IPR001001
Family
DNA polymerase III, beta chain
G3DSA:3.10.150.10\"[1-121]T\"[127-250]T\"[252-375]TDNA_polIII_beta
PF00712\"[1-122]TDNA_pol3_beta
PF02767\"[132-246]TDNA_pol3_beta_2
PF02768\"[248-373]TDNA_pol3_beta_3
SM00480\"[17-368]TPOL3Bc
TIGR00663\"[1-374]Tdnan
noIPR
unintegrated
unintegrated
SSF55979\"[1-119]T\"[126-247]T\"[248-374]TSSF55979


","BeTs to 11 clades of COG0592COG name: DNA polymerase III beta subunitFunctional Class: LThe phylogenetic pattern of COG0592 is amtKyqvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** PF00712 (DNA polymerase III beta subunit) with a combined E-value of 5.9e-14. PF00712B 138-161 PF00712E 237-252 PF00712F 308-345","Residues 1-170 are 28% similar to a (DNA III BETA CHAIN) protein domain (PD003730) which is seen in DP3B_SYNY3.Residues 173-359 are 25% similar to a (DNA III BETA CHAIN POLYMERASE TRANSFERASE DNA-DIRECTED) protein domain (PD003062) which is seen in DP3B_PSEPU.","","Thu Jun 14 12:19:51 MDT 2001","","Thu Jun 14 12:19:51 MDT 2001","Thu Jun 14 12:19:51 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:19:51 MDT 2001","Thu Jun 14 12:19:51 MDT 2001","","Tue Jun 26 08:38:16 MDT 2001","Wed May 23 16:57:00 MDT 2001","Tue Jun 26 08:38:16 MDT 2001","Tue Dec 19 15:18:05 MST 2000","Tue Jun 26 08:38:16 MDT 2001","Tue Jun 26 08:38:16 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Tue Dec 19 15:18:05 MST 2000","Wed May 23 16:57:00 MDT 2001","-45% similar to PDB:1VPK Crystal structure of DNA polymerase III, beta subunit (TM0262) from Thermotoga maritima at 2.00 A resolution (E_value = 9.3E_24);-43% similar to PDB:1MMI E. COLI DNA POLYMERASE BETA SUBUNIT (E_value = 7.4E_21);-43% similar to PDB:1OK7 A CONSERVED PROTEIN BINDING-SITE ON BACTERIAL SLIDING CLAMPS (E_value = 7.4E_21);-43% similar to PDB:1UNN COMPLEX OF BETA-CLAMP PROCESSIVITY FACTOR AND LITTLE FINGER DOMAIN OF POLIV (E_value = 7.4E_21);-43% similar to PDB:2POL THREE-DIMENSIONAL STRUCTURE OF THE BETA SUBUNIT OF ESCHERICHIA COLI DNA POLYMERASE III HOLOENZYME: A SLIDING DNA CLAMP (E_value = 7.4E_21);","","","Residues 1 to 122 (E-value = 1.2e-14) place PG1615 in the DNA_pol3_beta family which is described as DNA polymerase III beta subunit, N-terminal domain (PF00712)Residues 132 to 246 (E-value = 1.1e-10) place PG1615 in the DNA_pol3_beta_2 family which is described as DNA polymerase III beta subunit, central domain (PF02767)","Tue Jun 26 08:38:16 MDT 2001","34541464","","","","","","1","","","PG1853" "PG1616","1953975","1953421","555","ATGACCAAAAAGGAACTCAGAGCACAGATCCGGCAGCGTAATCGGGAGATGCTTGCGGCAGAAAACCGTGAGAGATGGTCGCAGTCCATCATAGAGCGGATTCGCCGGCTCGACATATTTGCTGATGCCAAACGTATAGGACTTTATCATGCTTTGCCGGACGAGCCGGATTTGACCGGCTTATTACGGGAGTATGTTCAAACCAAACAGCTTTTTATCCCCAGAGTAGAAGGGGACGACATCGCTTTCTATGCCTATACCGGCGAGGCTGATCTTGAAGCCGAAGGGGCTTATGGCATAGCCGAGCCTACAGCCGATGCCGCTACAGCCATTCTTCCCTCTTCGTTGGATCTGCTGCTGGTACCCGGTGTAGCTTTCGATCGCAAAGGCAGTCGCATGGGGCGAGGCAAAGGCTATTACGATCGTTTCCTGCCGGCGACTCAAGTTCGGCTTATAGGTGTCACGTTCTCCTACCGTCTTTTGGAGGAATTGCCTACCGATCCTTGGGATCGCCCGATGGATGGAGTCATCACCGAAAGCGAAACACTCTTCTGC","4.90","-4.80","21028","MTKKELRAQIRQRNREMLAAENRERWSQSIIERIRRLDIFADAKRIGLYHALPDEPDLTGLLREYVQTKQLFIPRVEGDDIAFYAYTGEADLEAEGAYGIAEPTADAATAILPSSLDLLLVPGVAFDRKGSRMGRGKGYYDRFLPATQVRLIGVTFSYRLLEELPTDPWDRPMDGVITESETLFC","1953974 1953420","TIGR ID: PG1854","conserved hypothetical protein (probable 5-formyltetrahydrofolate cyclo-ligase)","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 1-179 are 40% similar to gbAAC07587.1 hypothetical protein of Aquifex aeolicus, residues 3-179 are 35% similar to dbjBAB05136.1 5-formyltetrahydrofolate cyclo-ligase of Bacillus halodurans, residues 2-181 are 33% similar to gbAAF95621.1 conserved hypothetical protein of Vibrio cholerae.","
InterPro
IPR000114
Family
Ribosomal protein L16
PS00701\"[132-143]?RIBOSOMAL_L16_2
InterPro
IPR002698
Family
5-formyltetrahydrofolate cyclo-ligase
PTHR23407:SF1\"[1-182]TFTHF_cligase
PF01812\"[3-179]T5-FTHF_cyc-lig
TIGR02727\"[3-179]TMTHFS_bact
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.10420\"[4-182]TG3DSA:3.40.50.10420
PTHR23407\"[1-182]TPTHR23407
SSF100950\"[1-185]TSSF100950


","BeTs to 12 clades of COG0212COG name: 5-formyltetrahydrofolate cyclo-ligaseFunctional Class: HThe phylogenetic pattern of COG0212 is --t-yq-cebrhujgp-linxNumber of proteins in this genome belonging to this COG is 1","***** PF01812 (5-formyltetrahydrofolate cyclo-ligase) with a combined E-value of 3.6e-27. PF01812B 117-145 PF01812C 152-177","Residues 1-179 are 40% similar to a (PROTEIN SYNTHETASE LIGASE 5-FORMYLTETRAHYDROFOLATE) protein domain (PD004590) which is seen in O67621_AQUAE.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Mar 28 08:47:01 MST 2001","Wed Jul 30 13:53:51 2008","Tue Mar 27 17:21:19 MST 2001","Tue Mar 27 17:21:19 MST 2001","Tue Mar 27 17:21:19 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Jul 30 13:53:51 2008","-60% similar to PDB:1SOU NMR structure of Aquifex aeolicus 5,10-methenyltetrahydrofolate synthetase: Northeast Structural Genomics Consortium Target QR46 (E_value = 4.3E_32);-51% similar to PDB:1WKC Crystal structure of a 5-formyltetrahydrofolate cycloligase-related protein from Thermus thermophilus HB8 (E_value = 1.5E_21);-47% similar to PDB:1YDM X-Ray structure of Northeast Structural Genomics target SR44 (E_value = 7.3E_16);-56% similar to PDB:2JCB THE CRYSTAL STRUCTURE OF 5-FORMYL-TETRAHYDROFOLATE CYCLOLIGASE FROM BACILLUS ANTHRACIS (BA4489) (E_value = 9.5E_16);","","","Residues 3 to 179 (E-value = 4.3e-47) place PG1616 in the 5-FTHF_cyc-lig family which is described as 5-formyltetrahydrofolate cyclo-ligase family (PF01812)","Tue Mar 27 17:21:19 MST 2001","34541465","","","","","","1","","","PG1854" "PG1617","1955569","1953938","1632","ATGAAACGTTCATCCGGTTCCGGCAGCACCCTCTCATACATCCTTATCGCTGCCATCTTCAGCGCCGTTGGTGCTCTTGCCTCACATTTCTATTTCACTCACAAGAATCCGAGCGATCTGAATGAAGTGTTGAATCTGATCGACAGAAACTATGTCGATTCGGTAGATGTGCGGAAGTTGCAGCACAATATGATTCCCTATCTGCTGGAGCAGCTCGACCCTCACTCCGTATTCCTTAGCAAGGCCGACAACGCCGAGGAAGCTGCCACGCTTAGCGGCGGATTCTGTGGTATCGGCGTTTCTTTCAATACACTGCTGGATACTATCGTGGTTACGCAGATCGTACCGGGAGGCCCGTCCGATCGTGCAGGTATCCGAGCCGGCGACCGTTTGCTTCAGGCCGGATCGCAGAAACTGTACGGCAAGGGTGTCGATATGAACACCATCGACGATGTGCTTCGTGGAGAAAAGGGGTCGGTGGTCAATATCCTGATACGGCGCAATGGAAAGGAATCGGTGCATCGGGTGGTACGAGACGATGTTCCTCTGCCCTCGCTCAATGCTTTTTACCTGATAGAACCCTCCATAGCCTACGTGCGAATCGATTCTTGGACAGGTACCACACATGCGGAGTTCATAGAAGCCTTGGGACGTTTGCGCAAGAAAGGGGCTACGAGCCTTATCCTCGATCTGCGAGAAAATCGGGGCGGTTTGCTGGAGCCGGCTATTGCCATGGCCAATGAATTTTTGGGTAAGAATCTCCCCATTCTTCAGATCGAAGGCAAAGCGTATCCGCGTGAGGAGATTTCGTCCGATGGCAAAGGTATCTTGCAGCAAATTCCTCTGGTAGTGCTGGTGGATGAGTTCTCGGCAAGCAGCAGCGAGGTATTTACCGGTGCCATGCAAGACCATGACCGCGCTCAAATCATCGGTCGCCGGACGTTCGGCAAGGGACTGGTGCAACTGCCGTTCGATTTGGCAGATGGTTCTGCCATCCGCCTGACCGTAGCACGCTATTATACGCCATCGGGACGCTCCATTCAGAAGCCGTATTCTTCCGGCGTAGATGAAAATTACTATCAGGATCTGAGGAATCGCTTCAATCACGGAGAGCTATACTCGGCCGACAGCATACCTTCACTGGGAGGAAAGATATTCAAGACAGCCGGTGGCCGCGAAGTCTATGGTGGCGGTGGCATCATACCGGATATTTTTATCCCACTGGATACAGCCGGTCTTAATTCCTATATGATGAAAGTGGAGGATTCGGATTTGATCCCTCGCTATGCTTTCCTGTACAGCGATGCGAACAGGGTTTCCTTGAGTCGTTTTAAGACAGTCGAGGAGTTGGGAGCTTATCTGGATCGTACTTATCTGATTTTCGACTTTGCTTCTTTTGCCCAGCGTTACGGTATCCCGATGCGTACTTCTTTAATCAACGAAGCTCGCAACCGCATAAAAAAATATATCAATGCATACATTGCGATGAATTTCTTCGATCTGCAGGGGTATTATCAATTGCTGCTGCATGATGATCCTTTTATCCTCCAAGCCATTTCTCTCATCAAAGAGGGCAAAACTTTTCCATTGATTTATGACCAAAAAGGAACTCAGAGCACAGATCCGGCAGCG","6.60","-1.84","60125","MKRSSGSGSTLSYILIAAIFSAVGALASHFYFTHKNPSDLNEVLNLIDRNYVDSVDVRKLQHNMIPYLLEQLDPHSVFLSKADNAEEAATLSGGFCGIGVSFNTLLDTIVVTQIVPGGPSDRAGIRAGDRLLQAGSQKLYGKGVDMNTIDDVLRGEKGSVVNILIRRNGKESVHRVVRDDVPLPSLNAFYLIEPSIAYVRIDSWTGTTHAEFIEALGRLRKKGATSLILDLRENRGGLLEPAIAMANEFLGKNLPILQIEGKAYPREEISSDGKGILQQIPLVVLVDEFSASSSEVFTGAMQDHDRAQIIGRRTFGKGLVQLPFDLADGSAIRLTVARYYTPSGRSIQKPYSSGVDENYYQDLRNRFNHGELYSADSIPSLGGKIFKTAGGREVYGGGGIIPDIFIPLDTAGLNSYMMKVEDSDLIPRYAFLYSDANRVSLSRFKTVEELGAYLDRTYLIFDFASFAQRYGIPMRTSLINEARNRIKKYINAYIAMNFFDLQGYYQLLLHDDPFILQAISLIKEGKTFPLIYDQKGTQSTDPAA","1955568 1953937","TIGR ID: PG1855","carboxyl-terminal proteinase","Outer membrane, Cytoplasm, Extracellular","Residues 42-348 have 36% similarity to AE004926, P. aeruginosa probable carboxyl-terminal protease.Residues 43-348 have 38% similarity to AE004076, X. fastidiosa carboxyl-terminal protease.Residues 38-348 have 32% similarity to AE000636, H. pylori carboxyl-terminal protease.This sequence is similar to BT4259.","
InterPro
IPR001478
Domain
PDZ/DHR/GLGF
PF00595\"[108-166]TPDZ
SM00228\"[96-169]TPDZ
PS50106\"[76-168]TPDZ
SSF50156\"[92-182]TPDZ
InterPro
IPR004447
Family
Peptidase S41A, C-terminal protease
TIGR00225\"[48-378]Tprc
InterPro
IPR005151
Domain
Peptidase S41
PF03572\"[195-361]TPeptidase_S41
SM00245\"[169-360]TTSPc
noIPR
unintegrated
unintegrated
G3DSA:2.30.42.10\"[81-169]TG3DSA:2.30.42.10
G3DSA:3.90.226.10\"[172-349]TG3DSA:3.90.226.10
PTHR19964\"[109-132]TPTHR19964
PTHR19964:SF12\"[109-132]TPTHR19964:SF12
SSF52096\"[33-415]TSSF52096


","BeTs to 10 clades of COG0793COG name: Periplasmic proteaseFunctional Class: MThe phylogenetic pattern of COG0793 is -----qvCeB-huj--olinxNumber of proteins in this genome belonging to this COG is 4","No significant hit to the Blocks database.","Residues 176-349 are 33% similar to a (PROTEASE CARBOXYL-TERMINAL PRECURSOR) protein domain (PD004132) which is seen in O83301_TREPA.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed May 16 18:32:51 MDT 2001","Mon Jan 5 11:32:26 2004","Wed May 16 18:32:51 MDT 2001","","Tue Mar 6 13:42:31 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 40-524 have 40% similarity to PG0214, a carboxyl-terminal protease.Residues 40-524 have 30% similarity to PG0942, probable tail-specific protease.","Tue Jun 5 11:09:16 MDT 2001","Tue Mar 6 13:42:31 MST 2001","-51% similar to PDB:1FC7 PHOTOSYSTEM II D1 C-TERMINAL PROCESSING PROTEASE (E_value = 2.5E_36);-51% similar to PDB:1FC9 PHOTOSYSTEM II D1 C-TERMINAL PROCESSING PROTEASE (E_value = 2.5E_36);-51% similar to PDB:1FCF PHOTOSYSTEM II D1 C-TERMINAL PROCESSING PROTEASE (E_value = 2.5E_36);-51% similar to PDB:1FC6 PHOTOSYSTEM II D1 C-TERMINAL PROCESSING PROTEASE (E_value = 4.3E_36);","","","Residues 193 to 361 (E-value = 3.8e-57) place PG1617 in the Peptidase_S41 family which is described as Peptidase family S41B (PF03572)","Wed May 16 18:32:51 MDT 2001","34541466","","","","","","1","","","PG1855" "PG1618","1956032","1955580","453","ATGGCTATGACGACAAATGAAGTCAAGGACAAGCAGTTGGAATTGGACAAACGCTATCTGCGCATGGCGCGCATTTGGGCGGAGAATTCCTACTGCGAACGGCGCAAAGTGGGTGCTCTTATCGTCAAAGAGCAGATGATCATTTCCGATGGGTACAATGGTACACCGGCTGGTTTTGAGAATATCTGCGAAGACGAGAACAACGTCACCAAGCCCTATGTCTTGCATGCCGAAGCCAATGCTATCACCAAAGTGGCCGGCAGCACGAACAACAGCTCCGGTGCTACTATCTATATCACGGCAGCTCCCTGTATCGAGTGTGCCAAGCTCATCATCCAGAGCAAAATAAAACGGGTGGTTTATTCCGAGAAATATCGTCTGGACGAAGGTTGTCGCTTGCTGGAGCGAGCGGGCATTGTCGTCGACTTTATAGACATTTCCGATATTCAGGAA","5.40","-2.00","16954","MAMTTNEVKDKQLELDKRYLRMARIWAENSYCERRKVGALIVKEQMIISDGYNGTPAGFENICEDENNVTKPYVLHAEANAITKVAGSTNNSSGATIYITAAPCIECAKLIIQSKIKRVVYSEKYRLDEGCRLLERAGIVVDFIDISDIQE","1956031 1955579 [Shadowed by 2098]","TIGR ID: PG1856","dCMP deaminase","Cytoplasm","Residues 11-143 have 39% similarity to AE000981, A. fulgidus dCMP deaminase protein.Residues 1-125 have 40% similarity to AE001720, T. maritima deoxycytidylate deaminase, putative.Residues 16-141 have 37% similairity to U10397, S. cerevisiae Dcd1p: dCMP deaminase. ","
InterPro
IPR002125
Domain
CMP/dCMP deaminase, zinc-binding
PF00383\"[13-123]TdCMP_cyt_deam_1
PS00903\"[76-111]?CYT_DCMP_DEAMINASES
InterPro
IPR015517
Family
Cytidine deaminase
PTHR11086\"[10-139]TCyt_deaminase
noIPR
unintegrated
unintegrated
G3DSA:3.40.140.10\"[14-148]TG3DSA:3.40.140.10
PTHR11086:SF2\"[10-139]TPTHR11086:SF2
SSF53927\"[13-143]TSSF53927


","BeTs to 6 clades of COG2131COG name: Deoxycytidylate deaminaseFunctional Class: FThe phylogenetic pattern of COG2131 is a--ky-v--b-------l---Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 27-124 are 40% similar to a (PROTEIN DEAMINASE HYDROLASE ZINC BIOSYNTHESIS) protein domain (PD001793) which is seen in O28510_ARCFU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed May 16 18:42:24 MDT 2001","Tue Mar 6 13:58:28 MST 2001","Wed May 16 18:38:47 MDT 2001","","Tue Mar 6 13:58:28 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 6 13:58:28 MST 2001","-48% similar to PDB:1VQ2 CRYSTAL STRUCTURE OF T4-BACTERIOPHAGE DEOXYCYTIDYLATE DEAMINASE, MUTANT R115E (E_value = 3.6E_14);","","","Residues 14 to 123 (E-value = 5.3e-28) place PG1618 in the dCMP_cyt_deam family which is described as Cytidine and deoxycytidylate deaminase zinc-binding region (PF00383)","Wed May 16 18:38:47 MDT 2001","34541467","","","","","","1","","","PG1856" "PG1620","1956466","1956116","351","ATGGACACGCAAACACTCAATAGCGATCTGCGCGTATTCATGCACCATATATACGAGTTTGAAAAAGGTGTGCGAAGCATGGTACTCGCCACACTGGCTAACGACGACATCCCATATGCGGAAGAACGGCTGCGAAGCCGGCAGATCCCCTATTTCGCCCAGCCTACTCCGAATACGGAGCGTACCAATCTCTTTTTCGGCTGCAAGGAGTGTATGGAGGCTATCCGTCTTTTCGTGAGTGGACGCTCTCTGAACAGCCTGACTCCGGAGGAAGATTTCATCATCGGGGCTATGCTCGGATACGATATTTGCAGACAGTGCGAACGCTATTGTCGCCGCAAATCGAACTCT","6.50","-0.76","13653","MDTQTLNSDLRVFMHHIYEFEKGVRSMVLATLANDDIPYAEERLRSRQIPYFAQPTPNTERTNLFFGCKECMEAIRLFVSGRSLNSLTPEEDFIIGAMLGYDICRQCERYCRRKSNS","1956465 1956115","TIGR ID: PG1857","hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","-100% similar to PDB:2GUK Crystal Structure of the Conserved Hypothetical Protein from Porphyromonas gingivalis (E_value = 1.7E_65);","","","No significant hits to the Pfam 11.0 database","","34541468","","","","","","1","","","PG1857" "PG1621","1957128","1956634","531","TTGCGCAGGTCAAACCAATATAAACTATTCAAAAACATGAAATCAATCGGAATCTTCTACGGTTCTTCTACCGGAACGACGAGCGATCTGGCTCAAAAAATTGCTTCTGCATTAGGCGTTGACTCCGCTAATGTAATGGACGTGGCAAATGCCGACGCTGCCGCTGCAGCGAAATACGATGTACTGCTTCTCGGCTCTTCCACATGGGGATTGGGCGACTTGCAGGACGACTGGGAATCATTCCTGCCGAAACTGAAAGGCGAAAACCTGAGTGGCAAGAAGGTAGGTCTCTTCGGCTGTGGCGATGCTTCTTCTTATAGCGATACTTTCTGCGCAGCTCTCGGTACGATCAAAGCCGAATTGGCTAATACGGGCTGTACTTTCATCGGTGCTTATCCTGCTGAAGGCTATAGCTACGACGAGACGACTGCCGAAGAAAATGGCCAACTCATCGGCTTGTGCGTGGACGACGCTAACGAATCCGACCAGACCGAAGCTCGTATGGAGCGTTGGATCGCTGCCATGGGCTTG","4.20","-10.19","18728","LRRSNQYKLFKNMKSIGIFYGSSTGTTSDLAQKIASALGVDSANVMDVANADAAAAAKYDVLLLGSSTWGLGDLQDDWESFLPKLKGENLSGKKVGLFGCGDASSYSDTFCAALGTIKAELANTGCTFIGAYPAEGYSYDETTAEENGQLIGLCVDDANESDQTEARMERWIAAMGL","1957163 1956633","TIGR ID: PG1858","flavodoxin A","Extracellular","Residues 13-175 have 39% similarity to M19116, Synechococcus sp. flavodoxin protein.Residues 13-172 have 37% similarity to AE004283, V. cholerae flavodoxin 1.","
InterPro
IPR001094
Domain
Flavodoxin-like
PR00369\"[17-30]T\"[63-74]T\"[92-102]TFLAVODOXIN
InterPro
IPR001226
Domain
Flavodoxin, N-terminal
PS00201\"[18-34]TFLAVODOXIN
InterPro
IPR008254
Domain
Flavodoxin/nitric oxide synthase
PF00258\"[18-171]TFlavodoxin_1
PS50902\"[16-176]TFLAVODOXIN_LIKE
InterPro
IPR010086
Family
Flavodoxin, long chain
TIGR01752\"[15-176]Tflav_long: flavodoxin
InterPro
IPR014357
Family
Flavodoxin
PIRSF000088\"[13-177]TFlavodoxin
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.360\"[13-175]Tno description


","BeTs to 6 clades of COG0716COG name: FlavodoxinsFunctional Class: CThe phylogenetic pattern of COG0716 is amT----cEB-huj---l---Number of proteins in this genome belonging to this COG is 1","***** IPB001226 (Flavodoxin) with a combined E-value of 6.2e-30. IPB001226A 18-34 IPB001226B 59-69 IPB001226C 73-114","Residues 17-140 are 41% similar to a (FMN FLAVOPROTEIN OXIDOREDUCTASE REDUCTASE) protein domain (PD000452) which is seen in FLAV_ECOLI.","","Thu Jun 14 12:20:08 MDT 2001","","","","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","","","","","Tue Mar 6 14:08:16 MST 2001","Tue Jun 26 08:35:43 MDT 2001","Wed May 16 18:44:24 MDT 2001","Tue Jun 26 08:35:43 MDT 2001","Tue Jun 26 08:35:43 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 6 14:08:16 MST 2001","-56% similar to PDB:1CZH COMPARISONS OF WILD TYPE AND MUTANT FLAVODOXINS FROM ANACYSTIS NIDULANS. STRUCTURAL DETERMINANTS OF THE REDOX POTENTIALS. (E_value = 2.2E_30);-56% similar to PDB:1CZO COMPARISONS OF WILD TYPE AND MUTANT FLAVODOXINS FROM ANACYSTIS NIDULANS. STRUCTURAL DETERMINANTS OF THE REDOX POTENTIALS. (E_value = 2.2E_30);-56% similar to PDB:1D03 REFINED STRUCTURES OF OXIDIZED FLAVODOXIN FROM ANACYSTIS NIDULANS (E_value = 2.2E_30);-55% similar to PDB:1CZK COMPARISONS OF WILD TYPE AND MUTANT FLAVODOXINS FROM ANACYSTIS NIDULANS. STRUCTURAL DETERMINANTS OF THE REDOX POTENTIALS. (E_value = 1.1E_29);-55% similar to PDB:1CZL COMPARISONS OF WILD TYPE AND MUTANT FLAVODOXINS FROM ANACYSTIS NIDULANS. STRUCTURAL DETERMINANTS OF THE REDOX POTENTIALS. (E_value = 1.1E_29);","","","Residues 18 to 171 (E-value = 5e-39) place PG1621 in the Flavodoxin_1 family which is described as Flavodoxin (PF00258)","Tue Jun 26 08:35:43 MDT 2001","34541469","","","","","","1","","","PG1858" "PG1622","1958427","1957270","1158","ATGAAGAAGATCGTGATAGCCATAGACTCCTTCAAGGGTTGTCTCTCCTCTGTCGAGGCAGGAGAAGCAGCTGCTGAGGGCGTACGGGCAGCCTGTCCGATTGCAGAAGTAATGGTACTGCCCGTAGCTGATGGGGGAGAGGGGATGCAGGATGTACTGATAGCTGCCACAGATGGGCAGCGCATAGCCGTTCGTGCACACTCCCCACTAATGGAAATGCGCGAGGCTTCTTATGGTATATCCGCTGACGGACAGACGGCTTTCATCGAAATGGCGAGCATCAGCGGACTGCCTCTCGTGCCGGAAGACCGGCGCAATCCTATGCAGACTACCACGTTCGGAACGGGAGAGCTGATCAAAGATGCTCTGGATCGAGGTTGTCGTAAGTTTATCGTCGGGATCGGTGGCAGCGCCACCAACGATGCCGGACTGGGGATGCTACAGGCATTGGGCTTTCGCTTCTACGATCGGGATGGGAGAGATATAGGGGAGGGCATGGCCCTATGCGGCGGTTTGCTGTCGGAGGTCTATCGCATCGATGACTCTTCGGCACATCCGGCTTTGGCCGATTCGCTTTTTACGGTGGCCTGCGATGTGCGCAATCCTTTTTGCGGCCCCGAAGGTGCCGCTTTTGCCTTTGCTCCTCAGAAGGGAGCGGATGAGGAGATGGTGGCCCGATTGGATGATTCGATGCAGCATTTGGCTGCCGTTATACACCGGCATACGGGGCAGGATATAGTCCATATCCCGGGAGCTGGAGCTGCAGGCGGTATGGGAGGAGGGCTGTTGGCTTTCCTCGGAGCGGTGCTGAAGCCGGGCATCGAGCTACTATTGGACGCTTTGCATTTCTCCGAAAAGATACGGGAAGCCGATTTGATTCTGACCGGTGAGGGCAAAGCCGACCGGCAGACCCTGATGGGCAAAGTGCCGGCCGGTGTGTTGGCTGAGGCTATGAAGCAGGAGATACCCGTGGTATTGCTGGCCGGCAGTATCGAGGATGCTGTAGCTCTTAACCGCGCCGGTTTCCTCGGCCTCTTTCCGATTACTCCTTCTCCCGTCAGCCTTAGAGAGGCGATGAATCCGGCTTATGCACGGGACAACCTCCGGCGCACGGCCGAGCAGGTATGCCGTCTCTATGCTTTCGCCTCCGCACGGCCT","4.90","-12.62","40495","MKKIVIAIDSFKGCLSSVEAGEAAAEGVRAACPIAEVMVLPVADGGEGMQDVLIAATDGQRIAVRAHSPLMEMREASYGISADGQTAFIEMASISGLPLVPEDRRNPMQTTTFGTGELIKDALDRGCRKFIVGIGGSATNDAGLGMLQALGFRFYDRDGRDIGEGMALCGGLLSEVYRIDDSSAHPALADSLFTVACDVRNPFCGPEGAAFAFAPQKGADEEMVARLDDSMQHLAAVIHRHTGQDIVHIPGAGAAGGMGGGLLAFLGAVLKPGIELLLDALHFSEKIREADLILTGEGKADRQTLMGKVPAGVLAEAMKQEIPVVLLAGSIEDAVALNRAGFLGLFPITPSPVSLREAMNPAYARDNLRRTAEQVCRLYAFASARP","1958426 1957269","TIGR ID: PG1859","glycerate kinase","Cytoplasm","Residues 3-386 have 41% similarity to AE006211, P. multocida glycerate kinase.Residues 1-359 have 40% simialrity to AP001508, B. halodurans glycerate kinase.Residues 3-375 have 42% simialrity to AE005541, E. coli glycerate kinase.This sequence is similar to BT1437.","
InterPro
IPR004381
Family
Glycerate kinase
PF02595\"[2-384]TGly_kinase
TIGR00045\"[3-382]TGlyc_kinase
noIPR
unintegrated
unintegrated
G3DSA:3.90.1510.10\"[43-281]TG3DSA:3.90.1510.10
PTHR21599\"[3-386]TPTHR21599
SSF110738\"[2-384]TSSF110738


","BeTs to 4 clades of COG1929COG name: Uncharacterized BCRFunctional Class: SThe phylogenetic pattern of COG1929 is -------cEbrh---------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 3-375 are 42% similar to a (PROTEIN INTERGENIC REGION CONSERVED) protein domain (PD011710) which is seen in YHAD_ECOLI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Mar 6 14:18:00 MST 2001","Thu Dec 4 15:27:22 2003","Wed May 16 18:47:09 MDT 2001","","Mon Feb 12 11:20:19 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 6 14:18:00 MST 2001","-47% similar to PDB:1TO6 Glycerate kinase from Neisseria meningitidis (serogroup A) (E_value = 3.8E_41);-45% similar to PDB:1L4U CRYSTAL STRUCTURE OF SHIKIMATE KINASE FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH MGADP AND PT(II) AT 1.8 ANGSTROM RESOLUTION (E_value = 3.8E_41);-45% similar to PDB:1L4Y CRYSTAL STRUCTURE OF SHIKIMATE KINASE FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH MGADP AT 2.0 ANGSTROM RESOLUTION (E_value = 3.8E_41);-45% similar to PDB:1U8A Crystal Structure of Mycobacterium Tuberculosis Shikimate Kinase in Complex with Shikimate and ADP at 2.15 Angstrom Resolution (E_value = 3.8E_41);-42% similar to PDB:1VCV Structure of 2-deoxyribose-5-phosphate aldolase from Pyrobaculum aerophilum (E_value = 3.8E_41);","","","Residues 2 to 384 (E-value = 3.5e-142) place PG1622 in the Gly_kinase family which is described as Glycerate kinase family (PF02595)","Wed May 16 18:47:09 MDT 2001","34541470","","","","","","1","","","PG1859" "PG1623","1958405","1958710","306","ATGGCTATCACGATCTTCTTCATTCCGCATTTAGTTTACAACAAAATCCGGAAGCACTGCAAAGCATCCAAACAAAAATTCCAAAACCCAAGAGAAAAAACGATAGACAAACTAACTCGAATGGCTCTTAGGTTTTTGCTCTCATTCTGTAAACCTGTATCCGGAAAAGACAAATTCCGGTATCAGGTGGAGATTGCTATCGGAAAGGACTCTTTAAGTGCATCAATTTTTTATTGTGCTGTTCGCAAAAAAACAGCGACACTCAGAATAACTTTCGTATATCCATCGAAAGGAAGTCTTCGGCTC","11.20","17.31","11830","MAITIFFIPHLVYNKIRKHCKASKQKFQNPREKTIDKLTRMALRFLLSFCKPVSGKDKFRYQVEIAIGKDSLSASIFYCAVRKKTATLRITFVYPSKGSLRL","1958404 1958709 [Delay by 162 2102 185 0]","NO TIGR ID corresponds to this gene.","hypothetical protein","Periplasm","No significant hit found in gapped BLAST with E value less than e-04.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","-53% similar to PDB:1A0D XYLOSE ISOMERASE FROM BACILLUS STEAROTHERMOPHILUS (E_value = );","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG1624","1959851","1958670","1182","ATGTATAAAAGAGCAGAGTATCATGTGATTACAGATCGTCTTAAAGATCGGAGGAGATTCATTCAAGTCGTAATGGGGGCTCGTCAAATCGGAAAATCAACGGTTGTCAAGCAGGTGCTGAAGGACTTGGATGCACCCTATCAGTTCTTCTCAGCCGATAATGTTCCGACTGTGAACGGTGCTTGGATTTCCGATTGTTGGGCTGCTGTCCGTAGCCTGAAGGAGGCCAAGGAGTGGGAGAGCATTATTCTTGTGATCGACGAGATACAAAAGATTGCTAATTGGAGTGAAGTCGTGAAAAAAGAGTGGGACGATGATACGTTCCATGACCGTAATATCAAGGTGTTGCTGTTGGGCAGTAGTCGTGTGTTGTTGGAAAAGGGGTTGTCAGAGTCGCTGGCCGGTCGATTCGAAGAAATACGCATGAGCCATTGGAGCTATCAGGAGATGAAAGACTGCTTCGGTTTCTCGCTCAACCAATATCTGTTTTATGGGGGATATCCCGGTGCCGCTTCCCTGACCGATGATGACGACCGTTTCAGCCAATATATTCAAGCTGCCATTATCGAAGCAACTATCAATAAGGACATTCTGATGGGTACACCGATAGGTAAACCGGCTTTGCTTCGCCGGACTTTCGAATTGGGGGCTGCCTATTCGGGAGAATTACTTTCTTTGAACAAGATGTTAGGCTCACTCCAAGATGCCGGTAATACGGTGACCTTGGCCGGATATATCAATCTGTTGGATGAAAGCGGATTGCTTTGTGGACTTCAGAAGTTTGGTTATGATATGGCAAGGAGGAAGGCAAGTATTCCCAAACTGCAGGTCTATAACAATGCATTGAAGATGGTGTATAGCCCTTTTACCTTTGAACAAGCGATGCTTGATCGCAAGTCCTGGGGGCGAATCTTCGAATCAGGCATTGGAGCCTACCTCGTCAGTCAGGCTTTTGTTCATCGTTTCGAGGTATTTTATTGGCGCGAACGAGACGATGAAGTCGATTTCGTCCTGCGCAAGAAAGGTTCTGTTGTTGCCATTGAGGTGAAAAGCAATGCAGAGAAAAGGACAGACGGGCTGGACAAATTTTCCCATTCCTTCAAGCCCCAATCGGCTTTTATTCTCGGAGATGGAGGTGTCAGAGCCGAAGACTTCCTTTCGATGGATATACGAAAGTTATTC","7.50","1.09","44895","MYKRAEYHVITDRLKDRRRFIQVVMGARQIGKSTVVKQVLKDLDAPYQFFSADNVPTVNGAWISDCWAAVRSLKEAKEWESIILVIDEIQKIANWSEVVKKEWDDDTFHDRNIKVLLLGSSRVLLEKGLSESLAGRFEEIRMSHWSYQEMKDCFGFSLNQYLFYGGYPGAASLTDDDDRFSQYIQAAIIEATINKDILMGTPIGKPALLRRTFELGAAYSGELLSLNKMLGSLQDAGNTVTLAGYINLLDESGLLCGLQKFGYDMARRKASIPKLQVYNNALKMVYSPFTFEQAMLDRKSWGRIFESGIGAYLVSQAFVHRFEVFYWRERDDEVDFVLRKKGSVVAIEVKSNAEKRTDGLDKFSHSFKPQSAFILGDGGVRAEDFLSMDIRKLF","1959850 1958669","TIGR ID: PG1860","conserved hypothetical protein","Cytoplasm","Residues 2-394 have 46% similarity to Y15898, C. burnetti hypothetical protein.Residues 2-393 have 26% simialrity to AL445065, T. acidophilum conserved hypothetical protein.","
noIPR
unintegrated
unintegrated
SSF52540\"[4-159]TSSF52540
SSF52980\"[298-354]TSSF52980


","BeTs to 5 clades of COG1373COG name: Uncharacterized ATPases of the AAA superfamilyFunctional Class:  RThe phylogenetic pattern of COG1373 is -M-K--V---Rh---------Number of proteins in this genome belonging to this COG is 3","No significant hit to the Blocks database.","Residues 3-385 are 47% similar to a (PROTEIN PLASMID RV2008C ATP-BINDING) protein domain (PD018213) which is seen in O52890_COXBU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Mar 6 14:23:44 MST 2001","Tue Mar 6 14:23:44 MST 2001","Tue Mar 6 14:23:44 MST 2001","","Tue Mar 6 14:23:44 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 6 14:23:44 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Mar 6 14:23:44 MST 2001","34541471","","","","","","1","","","PG1860" "PG1624.1","1960286","1960014","273","TTGGCGTTGCCTCTTCTCCAAGAGTCTTTGGATGCCTTATGGGATCATACTGGCTCTTTTGTTGATTTGGCTTTTCCTCTCATGCTTGCATCCTTGCGGACTGCCGACTATCTGCTGCAAATAAGCCGGAAGTGGAATGAAGAAGATCGTGATAGCCATAGACTCCTTCAAGGGTTGTCTCTCCTCTGCCGAGGCAGGAGAAGCAGGCGGTATGGGAGGTGGGCTGTTGGCTTCACACCCCGAGCGATTATCCCTCGGGGTATTTTTTGTTTA","","","10494","LALPLLQESLDALWDHTGSFVDLAFPLMLASLRTADYLLQISRKWNEEDRDSHRLLQGLSLLCRGRRSRRYGRWAVGFTPRAIIPRGIFCL","","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
noIPR
unintegrated
unintegrated
signalp\"[1-35]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Tue Mar 6 14:26:09 MST 2001","","Tue Mar 6 14:26:09 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 6 14:26:09 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Apr 5 17:40:31 MDT 2001","","","","","","","1","","","" "PG1625","1960456","1960166","291","ATGATTGTATTGGCACTGATAAGCGCGGCATGTGCCTTGGTGGATGCTTTCTACTTGCAACTGGAAAGGAAGTATCGCGAGCTATACAAACGAAGCGTAGCAAAAATGGAGGAAGACCGTCCGCACAAGGAAATCTACGATATGGATGTTCGTAAGATCAAGATGAACTATTGGCGTTGCCTCTTCTCCAAGAGTCTTTGGATGCCTTATGGGATCATACTGGCTCTTTTGTTGATTTGGCTTTTCCTCTCATGCTTGCATCCTTGCGGACTGCCGACTATCTGCTGCAAA","8.70","5.18","11489","MIVLALISAACALVDAFYLQLERKYRELYKRSVAKMEEDRPHKEIYDMDVRKIKMNYWRCLFSKSLWMPYGIILALLLIWLFLSCLHPCGLPTICCK","1960455 1960165","TIGR ID: PG1862","hypothetical protein","Periplasm, Cytoplasm","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-16]?signal-peptide
tmhmm\"[66-86]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541473","","","","","","1","","","PG1862" "PG1626","1964402","1960605","3798","ATGGGCAAGTATAAAAGAGCTAAGTACCGCTATTGGCTTTTTCCTTTCTGTTCGGATTATTATACCTTTGAGGGAGTTACTTTTTTATGCGCATCTGACGATATGACAACCAAGAAACCCCAAGCCATTTTAGACTTAGAGAAGGCCTATAACATTGAAATTCCTGATCTCTCCTCACAAGAAGGGATAAGCTGGTCGGTAAATAGATATTTCAAGCAAGATTCCTCCGGTGCAGTCGTTGAGCTTTGCTTGCGAGAATGTCAGATAGAAAGCATGACTTGGCTTATTGATTTTCCTGCTCTAAAAAAGCTTGATCTATCGTATAACCAAATCAGTAAGCTAGAGGGTCTAGAACGTCTTACTTCGTTAACAAAACTTCGTCTAAGAAGTAACCAAATCCGTAAACTAGAGGGCCTGGATAGTCTCACCTCGCTAACAAAACTTTCTCTCTCCGATAACCAAATCAGTAAGCTAGAGGGTCTGGAACGTCTCACCTCGTTAGCGGAGCTTTATCTTTTGGATAACCAAATCAGTAAACTAGAGGGTCTGGAACGTCTCACGTCCTTAGCAACGCTTGAACTATCGGGTAACCAAATCCGTAAGCTGGAGGGTCTGGAACGTCTCACGTCCTTAGCAACGCTTGAACTATCGGGTAACCAAATCCGTAAGCTAGAGGGTCTGGAACGTCTCACTTCGTTAACAAAGCTTCGTCTAAGAAGTAACCAAATCAGTAAGCTAGAGGGTCTGGAACGTCTCACGTCCTTAGCAACGCTTGAACTATCGGGTAACCAAATCCGTAAGCTGGAGGGTCTGGAACGTCTCACGTCCTTAGCAACGCTTGAACTGTCGGGTAACCAAATCAGTAAGCTAGAGGGTCTGGAACGTCTCTCTTCGTTAACAAAGCTTCGTCTAAGAAGTAACCAGATCAGTAAACTAGAGGGCCTGGAACGTCTCACCTCGCTAACAAAACTTTCTCTCTCCGATAACCAAATCAGTAAGCTAGAGGGTCTGGAACGTCTCACCTCGTTAGCGGAGCTTTATCTTTTGGATAACCAAATCCGTAAGCTGGAGGGCCTGGAACGTCTCACCTCGTTAACAAAGCTTCGTCTAAGAAGTAACCAAATCAGTAAACTAGAGGGCCTGGATAGTCTCACCTCGCTAACAAAACTTTCTCTCTCCGATAACCAAATCAGTAAACTAGAGGGCCTGGAACGTCTCACGTCCTTAGCGGAGCTTTATCTTTTGGATAACCAAATCCGTAAGCTGGAGGGTCTTGATGGTCTTGCTTCCTTAACAAGGCTTAGTCTAAGGCGCAACCAAATCAGTAAGCTGGAAGGACTAGACAGACTAAAGGTTTTGAGAAAACTTGATGTTTCGGGCAATGATATTCAATCTATTGATGATATTAAGCTATTGGCTCCGATTCTGGAGCAAACTTTAGAAAAACTGAGAATCCATGACAATCCATTTGTTGCATCATCAGGCTTGATACTCTCTCCTTATGATAATCATTTGCCGGAGATTAAAGCTCTTCTTGAAAAAGAAAAAGAAAAACAGAAAAAGACTTCAGTTGAATATCACCCATTTTGCAAAGTAATGCTATTGGGAAATCATTCTTCGGGTAAAACAACATTTCTTAGTCAATACGATACAAATTATACGTATCAGAAAAATACACATGTGTTGTCGATACATCGAAGCAATAACCCTAATGCGATCTTTTACGACTTTGGGGGACAGGACTATTATCATGGGATTTACCAAGCCTTTTTTACCACCCAATCGTTATACCTTCTCTTTTGGGATGCTAAGAAGGATCGAAACTTTGTGAGCGTAGATGATAAAGAATATCAGACTCTTAATTTCAATCGCCCCTATTGGTTAGGACAGATAGCCTATGCCTGCAATCGTTGTATGTCCGTTGGAGGAAATCCTGATGGCAAGGACACACCACAGACCACAGACGATACAATTATCATTCAGACTCATGCCGATGAAACGGGCGCTAAGCAGCAAACCTTAGGCTGTGCAGCCGAGAATGGAGTATTGGAAGAAATCTATGTATCCTTAGAGCCCAAGGCGAATAGTGCCGTACATGCGCTCAACTATCTGAATGAGCGGGTGCGAGAAGTTGTCGCAAGCAGGAGTAAATCAATTCAGATCACAGAAAAAGATAAGGGATTGTACGAAGCTCTTCCCACAATCGCCGGTGATAATAAACACATCCCTATCTCTCTCGAAGCTCTTGCGGCTCAATTGAATAAGGGAAGAGCTGAAAATGATCTTTACACCATAGAGTATCTACAGACCGAATTGAACCAGCTTAGTCTGCGAGGGGAGGTGCTTTACTATCGTGAGAATGAGAAGCTGAACAATTATGTCTGGTTAGATCCGGCAGCTTTTGTCCAAATGATTCATGGAGAAATCCTCCAAAAAGACAACATCAATAGAGGAACAGTTCCTAAAGACATTTTTGAATGCAAACTGCATAATCTAAGTTCCGGAAGTATATTTGAAGAAGATGGCCAAAATGGTAATATGATCTTGCAGCTATTATTGGAAGAGCTGATCGTATATGAAGATAAGGACTGCTATGTGATACCGGGCTATCTCCCTTTGCATTCCGATGACGAAGCCTATAAATGGCTTACTTTGGGATTCGAGAGGCCCAATTTTGTCCTCAAATTCGAACGTTTTATCCCCTTTGGCCTGATCAACCAGATTATAGCCTACTATGGCCGGGAAGAAGGTGCTCTAAAGCGGTATTGGCGAGATCAGGTCATCTTCACAGCAGGCCGTGAGATGGATAGGCAAACGCTTGAGCAAGAAGAAGAGAAAGAGGGTTTGCCCAAGACGAATGCCGAGGATTATCAGATCTGGATCAAGCTCGACTTTACCGACTTGGCCATATCCGTATTCATCAAAGAGCAGAGAAAGACATCAGCTAAGGATATGCAGCGGAAAGAGGCTACTATCCTCAGTGATATGTTGGATATGTATTGGAACAATATCCCTCCGAGGGAGCAAATAGGAGATAAGGATACGGAGCAAACGAGAAGCACTATTCGTGAAACAAACAGAAAGAAGAGACCCATCCAGGATCTCTACCTCTCCTGTGCCCAAGCGGATAAAGATTTGACGGAGTCTCATTATATCCATTTGGGCACGCTGGACGATGAAAGCAAGACTACGGCGAGGATTGCAGCCTATCCGTTGAAGAACGGCGTTATCGATAAAGAGCGGGTGCGAGAAGTATCGACTCGTCCCTACAAACATCTTTCCGTCAATAAAAATCTGGCTACTGCAAAACAGATCTTTATTTCCTATTCCAAAGAGGATCAGACTGAACTGGAGACCTGTCTGCAATTTTTCAAACCCTTGGAGAAGAATGGTCAGATCGAGATCTACTATGATAAGTTGACTAAGTTTGAAACACCTATTCACCCTGAAATAAGAAAGCGTATTGTCGAAGCCGACTGTATAATCGCTTTGATCAGCCAACGCTATCTGGCCACGGATTACATCCTGGATCATGAGTTGCCTGTATTTCGGGAGTATAACAAGACCATAGTGCCGATATTGATCAAGCCTTGTACATTCGAAGACGATGAGTTCCTTCGGGAGAAATATTTTGCTCAGAAAGCTCAAATAATCAATCTTGGAAAAGAGGGAAAAACCATTAAAGCTTATGATAGTATTACGGCATCAGCCCATCGTGATGAAAATTGGGTGGCAGTAGTCAGAGAGTTCAAAGAGAAGATATTAAGAATAACAAAACAGGAGGTAAATACAGATGAA","6.10","-11.89","145496","MGKYKRAKYRYWLFPFCSDYYTFEGVTFLCASDDMTTKKPQAILDLEKAYNIEIPDLSSQEGISWSVNRYFKQDSSGAVVELCLRECQIESMTWLIDFPALKKLDLSYNQISKLEGLERLTSLTKLRLRSNQIRKLEGLDSLTSLTKLSLSDNQISKLEGLERLTSLAELYLLDNQISKLEGLERLTSLATLELSGNQIRKLEGLERLTSLATLELSGNQIRKLEGLERLTSLTKLRLRSNQISKLEGLERLTSLATLELSGNQIRKLEGLERLTSLATLELSGNQISKLEGLERLSSLTKLRLRSNQISKLEGLERLTSLTKLSLSDNQISKLEGLERLTSLAELYLLDNQIRKLEGLERLTSLTKLRLRSNQISKLEGLDSLTSLTKLSLSDNQISKLEGLERLTSLAELYLLDNQIRKLEGLDGLASLTRLSLRRNQISKLEGLDRLKVLRKLDVSGNDIQSIDDIKLLAPILEQTLEKLRIHDNPFVASSGLILSPYDNHLPEIKALLEKEKEKQKKTSVEYHPFCKVMLLGNHSSGKTTFLSQYDTNYTYQKNTHVLSIHRSNNPNAIFYDFGGQDYYHGIYQAFFTTQSLYLLFWDAKKDRNFVSVDDKEYQTLNFNRPYWLGQIAYACNRCMSVGGNPDGKDTPQTTDDTIIIQTHADETGAKQQTLGCAAENGVLEEIYVSLEPKANSAVHALNYLNERVREVVASRSKSIQITEKDKGLYEALPTIAGDNKHIPISLEALAAQLNKGRAENDLYTIEYLQTELNQLSLRGEVLYYRENEKLNNYVWLDPAAFVQMIHGEILQKDNINRGTVPKDIFECKLHNLSSGSIFEEDGQNGNMILQLLLEELIVYEDKDCYVIPGYLPLHSDDEAYKWLTLGFERPNFVLKFERFIPFGLINQIIAYYGREEGALKRYWRDQVIFTAGREMDRQTLEQEEEKEGLPKTNAEDYQIWIKLDFTDLAISVFIKEQRKTSAKDMQRKEATILSDMLDMYWNNIPPREQIGDKDTEQTRSTIRETNRKKRPIQDLYLSCAQADKDLTESHYIHLGTLDDESKTTARIAAYPLKNGVIDKERVREVSTRPYKHLSVNKNLATAKQIFISYSKEDQTELETCLQFFKPLEKNGQIEIYYDKLTKFETPIHPEIRKRIVEADCIIALISQRYLATDYILDHELPVFREYNKTIVPILIKPCTFEDDEFLREKYFAQKAQIINLGKEGKTIKAYDSITASAHRDENWVAVVREFKEKILRITKQEVNTDE","1964401 1960604","In Lysteria monocytogenes internalin mediates entry into cells.TIGR ID: PG1864","conserved leucine-rich protein","Cytoplasm, Extracellular","Numerous hits using gapped BLAST to the first 500 residues including: residues 67-436 are 35% similar to (AJ012346) internalin A of Listeria monocytogenes.","
InterPro
IPR000157
Domain
Toll-Interleukin receptor
SSF52200\"[1098-1240]TTIR
InterPro
IPR001611
Repeat
Leucine-rich repeat
PR00019\"[101-114]T\"[186-199]TLEURICHRPT
PF00560\"[100-120]T\"[122-142]T\"[144-164]T\"[166-186]T\"[188-208]T\"[210-230]T\"[232-252]T\"[254-274]T\"[276-296]T\"[298-318]T\"[320-340]T\"[364-384]T\"[386-406]T\"[408-428]T\"[430-450]T\"[452-472]TLRR_1
noIPR
unintegrated
unintegrated
PD088955\"[1104-1266]TPD088955
G3DSA:3.40.50.300\"[524-622]TG3DSA:3.40.50.300
G3DSA:3.80.10.10\"[65-225]T\"[253-490]TG3DSA:3.80.10.10
PTHR10588\"[190-436]TPTHR10588
PTHR10588:SF23\"[190-436]TPTHR10588:SF23
SSF52540\"[506-757]TSSF52540


","No hit to the COGs database.","***** PR00019 (Leucine-rich repeat signature) with a combined E-value of 1.5e-06. PR00019A 101-114 PR00019B 186-199 PR00019A 277-290 PR00019A 189-202 PR00019A 211-224 PR00019A 255-268 PR00019A 453-466 PR00019B 208-221 PR00019B 252-265 PR00019B 274-287 PR00019B 98-111 PR00019B 142-155 PR00019B 318-331 PR00019B 384-397 PR00019B 450-463 PR00019B 120-133 PR00019B 230-243 PR00019B 362-375 PR00019B 296-309 PR00019B 164-177 PR00019B 340-353 PR00019B 406-419 PR00019B 428-441","Residues 373-447 are 41% similar to a (PROTEIN REPEAT PRECURSOR GLYCOPROTEIN SIGNAL) protein domain (PD000020) which is seen in Q17692_CAEEL.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Tue Apr 10 15:17:06 MDT 2001","Tue Apr 10 15:17:06 MDT 2001","Tue Apr 10 15:17:06 MDT 2001","Thu Jan 11 08:24:35 2001","Fri Feb 23 16:49:22 MST 2001","Fri Feb 23 16:49:22 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Mar 9 10:15:26 MST 2001","-46% similar to PDB:1O6S INTERNALIN (LISTERIA MONOCYTOGENES) / E-CADHERIN (HUMAN) RECOGNITION COMPLEX (E_value = 7.9E_31);-46% similar to PDB:1O6T INTERNALIN (INLA,LISTERIA MONOCYTOGENES)- FUNCTIONAL DOMAIN,UNCOMPLEXED (E_value = 7.9E_31);-46% similar to PDB:1O6V INTERNALIN (INLA,LISTERIA MONOCYTOGENES)- FUNCTIONAL DOMAIN UNCOMPLEXED (E_value = 7.9E_31);-49% similar to PDB:1H6U INTERNALIN H: CRYSTAL STRUCTURE OF FUSED N-TERMINAL DOMAINS. (E_value = 1.2E_15);-51% similar to PDB:1D0B INTERNALIN B LEUCINE RICH REPEAT DOMAIN (E_value = 2.8E_12);","","","No significant hits to the Pfam 11.0 database","Tue Apr 10 14:55:50 MDT 2001","34541475","","","Gaillard,J.L., Berche,P., Frehel,C., Gouin,E. and Cossart,P., Entry of L. monocytogenes into cells is mediated by internalin, a repeat protein reminiscent of surface antigens from gram-positive cocci, Cell 65 (7), 1127-1141 (1991), PubMed: 1905979.","","Tue Apr 10 15:17:06 MDT 2001","1","","","PG1864" "PG1627","1965712","1965194","519","ATGCAAACCATCATCACCACATTCATCCTTTTCTTTTGCTTGCGACTGCTCTCCCTCTCCTATTCCATCTTCAACGAGAAGCGACTGCTACGCAAGGGCGCAGTACAGTATGGCAAGCTCAATTCGCTTTTCCTCACCCTGGCTCACATAGCCTATTACTTCACTTCCCTGTACGAAGCGTATGCCACGGGAGTCGAGTTCAATACGCTATCCGGCTGGGGCGTAGCGATCTTGGTTTTTGCCTATGCCATGCTCTTCTTCGTCATCTATAAGCTGAGGGATGTGTGGACGCTGAAGCTCTATATCGTACCCGATCATCGTATCGAAACGAGCTTCCTGTTCAAGACGGTACGCCATCCCAACTATTTCCTCAACGTCATTCCGGAGCTTATCGGTATCACCCTCCTTTGCAATGCTTGGATTACCTTCTGTGTCGGAATGCCCGTCTATCTCGCTATCCTCTTCGTTCGTATCCGTCAGGAAGAGCGCGCCATGAAGCATCTATGGGCGACGGTACGA","10.30","8.80","20288","MQTIITTFILFFCLRLLSLSYSIFNEKRLLRKGAVQYGKLNSLFLTLAHIAYYFTSLYEAYATGVEFNTLSGWGVAILVFAYAMLFFVIYKLRDVWTLKLYIVPDHRIETSFLFKTVRHPNYFLNVIPELIGITLLCNAWITFCVGMPVYLAILFVRIRQEERAMKHLWATVR","1965711 1965193","TIGR ID: PG1868","conserved hypothetical protein","Inner membrane, Cytoplasm","Residues 1-169 have 56% similarity to U32717, H. influenzae conserved hypothetical protein.Residues 1-169 have 56% similarity to AE006137, P. mulitocida hypothetical protein.Residues 1-169 have 48% similarity to AL162755, N. meningitdis putative integral membrane protein.","
InterPro
IPR007269
Family
Isoprenylcysteine carboxyl methyltransferase
PF04140\"[75-167]TICMT


","BeTs to 3 clades of COG1755COG name: Uncharacterized BCR, YpbQ familyFunctional Class:  SThe phylogenetic pattern of COG1755 is ---------brh---------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 8-168 are 57% similar to a (PROTEIN TRANSMEMBRANE BCSA-DEGR) protein domain (PD084693) which is seen in Y318_HAEIN.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Mar 6 15:47:20 MST 2001","Tue Mar 6 15:47:20 MST 2001","Tue Mar 6 15:47:20 MST 2001","","Tue Mar 6 15:47:20 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 6 15:47:20 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 75 to 167 (E-value = 1.5e-43) place PG1627 in the ICMT family which is described as Isoprenylcysteine carboxyl methyltransferase (ICMT) family (PF04140)","Tue Mar 6 15:47:20 MST 2001","34541477","","","","","","1","","","PG1868" "PG1628","1966620","1965964","657","ATGAAGCAGAAAAACGCCTATAACCGACTGACTAACCACTACGACGATGTCCTCACCGGACGGAAATGGTGGTCTTGGCTCTATATGCACTGTCTCTGGAAAACGGACGACAATATCATCGCAGGCTCGGTGCTGGACATGATTCCCGGCAACTTCGAGGGCAGAATACTCGACGTCCCCGTAGGAACAGCCATTTTCACCTATGACAAATACAGGCGGATGCCCCAAGCCGAGATTGTCGGGCTGGACTATTCGCAGGAAATGCTCGACATAGCAGCGATGCGCTTCAGTGCAGAGCAAATAACCAACGTATCGCTCCGGCAAGGCGATGTCGGCAGCCTGCCTTTCCCCGATGCGGCTTTCGACCTCGTGCTCTCGATGAATGGCTTTCACGTCTTCCCCGACAAGGACCGTGCCTTTGCAGAGACTTTCCGCGTGCTAAGAGGCGGTGGTCTCTTCTGCGGATGCTTCTATGTCAAGGGGGAACGCAAGCCCGCCGATTGGTTTGTCCGCAAGTTTTTGGACAAAAAAGGCTTGTTCCGTCCGCCCCATTATACGAGGGAGGAAGCCATCGAAAAGCTCCGTTCCTTATATGGAGACAATGTGGAGATTCAGGATGCTCGCTCTCTGTTGGTATTCAAATGTACCAAACCCCGA","8.50","3.77","25339","MKQKNAYNRLTNHYDDVLTGRKWWSWLYMHCLWKTDDNIIAGSVLDMIPGNFEGRILDVPVGTAIFTYDKYRRMPQAEIVGLDYSQEMLDIAAMRFSAEQITNVSLRQGDVGSLPFPDAAFDLVLSMNGFHVFPDKDRAFAETFRVLRGGGLFCGCFYVKGERKPADWFVRKFLDKKGLFRPPHYTREEAIEKLRSLYGDNVEIQDARSLLVFKCTKPR","1966625 1965963","TIGR ID: PG1870","methyltransferase","Cytoplasm","A few significant hits and numerous weak hits in gapped BLAST; e.g. residues 55-151 are 43% similar to gb|AAF11949.1|AE002071_3 ubiquinone/menaquinone biosynthesis methyltransferase of Deinococcus radiodurans, residues 53-201 are 27% similar to pir||E69758 hypothetical protein of Bacillus subtilis, residues 55-154 are 37% similar to emb|CAB11235.1| methyltransferase-UbiE family of Schizosaccharomyces pombe.","
InterPro
IPR013216
Domain
Methyltransferase type 11
PF08241\"[57-155]TMethyltransf_11
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.150\"[44-213]TG3DSA:3.40.50.150
PTHR10108\"[53-153]TPTHR10108
PTHR10108:SF26\"[53-153]TPTHR10108:SF26
SSF53335\"[2-218]TSSF53335


","BeTs to 10 clades of COG0500COG name: SAM-dependent methyltransferasesFunctional Class: RThe phylogenetic pattern of COG0500 is AMTKYQVCEBRHUJgPOLINXNumber of proteins in this genome belonging to this COG is 7","***** IPB000339 (ubiE/COQ5 methyltransferase family) with a combined E-value of 1.1e-08. IPB000339B 57-68 IPB000339C 83-95 IPB000339D 120-159","Residues 79-151 are 42% similar to a (PROTEIN METHYLTRANSFERASE TRANSFERASE BIOSYNTHESIS) protein domain (PD000198) which is seen in YAFE_ECOLI.","","Thu Jun 14 12:20:23 MDT 2001","","Thu Jun 14 12:20:23 MDT 2001","Thu Jun 14 12:20:23 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:20:23 MDT 2001","Thu Jun 14 12:20:23 MDT 2001","","","Tue Mar 6 16:02:54 MST 2001","Tue Jun 26 08:31:59 MDT 2001","Tue Mar 6 16:01:20 MST 2001","Tue Jun 26 08:31:59 MDT 2001","Tue Jun 26 08:31:59 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 7-150 are 28% similar to PG0874, a predicted ubiquinone biosynthesis methyltransferase. Similarities are also seen to PG1282, a probable methyl transferase.","Tue Jun 26 08:31:59 MDT 2001","Tue Mar 6 16:01:20 MST 2001","-50% similar to PDB:1XXL The crystal structure of YcgJ protein from Bacillus subitilis at 2.1 A resolution (E_value = 1.7E_12);-50% similar to PDB:2GLU The crystal structure of YcgJ protein from Bacillus subitilis (E_value = 1.7E_12);","","","No significant hits to the Pfam 11.0 database","Tue Jun 26 08:31:59 MDT 2001","34541479","","","","","","1","","","PG1870" "PG1629","1966952","1966665","288","TTGCTCTTGGATTCAATTTTTTTTAGGACACATCCGGATTGGATCGTTTGCTGTCGTTTTTTACAAGGAGTCGGTACCGATCGGGAGAAACGGGAAGAAAATGGGCGAAAGAAGACTGTGAAAATCACCATTTTTAGCGATTGTATGCTGTGGGCAAACCCTATATCTTTGTGTATCAGGCATAGAGCAGTTTTTAACAATCGAAATCTCAGGATGGATTTTTCTTCCTATACAATCCTTTGCCTTAATCGGCTCGATGCATGGATACCGGCTTTCGGTATACCCAAG","9.60","6.22","11287","LLLDSIFFRTHPDWIVCCRFLQGVGTDREKREENGRKKTVKITIFSDCMLWANPISLCIRHRAVFNNRNLRMDFSSYTILCLNRLDAWIPAFGIPK","1966951 1966664","TIGR ID: PG1871","hypothetical protein","Cytoplasm","This sequence corresponds to gi:34397797 in Genbank.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","Tue Mar 8 15:48:21 2005","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 8 15:48:21 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541480","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Tue Mar 8 15:48:21 2005","","1","","","PG1871" "PG1630","1969004","1967028","1977","ATGAAGTTCACTCTGGACAATACGCTGCCTGCTTATCCCAAGTTTGTAGCAGGTATTCGCCGCGCTCCTGACCGCGGCTTCCGTCTTACCCCTTCACAGACACGCACGGCCTTGAAGAATGCATTGCGTTATATCCCCGTGGAGTTGCATAAGGAGCTTGCTCCCGAATTCCTCGAGGAGCTGAGAACCCGTGGAAAGATCTATGGCTATCGCTTCCGTCCCGAAGGGGATCTCAAAGCCAAAAGCATCGACGAGTACGAAGGCCGGTGTATAGAAGGAAAGGCCTTTCAGGTGATGATCGACAATAATCTCTGTTTCGACATCGCCCTCTATCCCTACGAACTCGTTACTTACGGAGAGACCGGGCAGGTATGCCAGAACTGGATGCAGTACCGTCTCATCATGAAGTACCTCCGAGAGATGACCAACGAGCAGACACTCGTGATCGAAAGCGGTCATCCTTTGGGACTCTTCAAGTCCAAGCCTGATGCTCCGCGCGTGATCATCACCAACTCCATGATGGTCGGCTTGTATGACAATATCAAGGATTGGGAGATCGCTGCCCAGATGGGTGTGGCCAATTATGGACAGATGACTGCCGGTGGCTGGATGTATATCGGGCCGCAAGGTATCGTACACGGTACGTTCAATACCCTGCTCAATGCCGGTCGTCAGAAATTGAATATCCCCACGGGAGGCAATTTGGCCGGCAAACTATTCGTCACCAGCGGTCTCGGCGGTATGAGCGGTGCACAGCCCAAGGCTGCCGATATTGCAGGAGCCGTCAGCATAACGGCCGAAGTGGACAGTAGCCGTATCGATACCCGTCACGGACAGGGATGGGTCAAGTTCCGTACCGAGTCGAAAGAAGAGGCTTTCCGTATGGCTGCCGATGCCCGGAAGAAGGGCGAACCTTGTTCTATTGCCTATCATGGCAATGTAGTAGACCTGCTCGAATATGCTTTGAGCGAAGGTATTCATATCGATCTCCTTTCCGATCAGACCAGTTGCCATGCCGTATATGAAGGCGGCTACTGTCCGGTGACACTCTCTTTCGAGGAGCGTACACGCCTGCTCAAAGAGGATCGCGACGAATTCTGCCGTCAGGTCGATCTCGGACTTAAACGTCATTTCGAAGTGGTGAAAGCTCTGGTAGCACGCGGATCTTACTTCTTCGACTACGGCAATGCTTTCATGAAGAGCATATACGATAGCGGTATTATCGAGATCAGCAAGAACAGAATCGACGATAAGGACGGATTTATCTGGCCGAGCTACGTGGAAGACATCATGGGCCCCGAGCTGTTCGACTACGGCTATGGCCCCTTCCGCTGGGTATGCCTTAGCGGTAAGCATGAGGATCTTGTCAAGACCGACCATGCAGCCATGGAATGCATCGATCCGGACAGACGCGAACAAGACCGCGACAACTGGATCTGGATACGCGATGCTGAGAAGAATCAGCTCGTCGTAGGTACACAGGCACGTATCCTCTATCAGGATGCACTCGGACGAATGAACATAGCACTGCGCTTCAATGAAATGGTACGCCGTGGCGAGGTTGGCCCTATCATGCTCGGACGTGACCATCACGATGTGAGCGGTACGGACAGTCCTTTCCGCGAGACCTCCAATATCAAGGACGGTAGCAATGTGATGGCCGATATGGCCGTGCAGTGTTTTGCCGGCAACGCTGCTCGCGGAATGAGCCTTGTGGCTCTGCACAACGGCGGCGGTGTAGGTATCGGGAAGTCTATCAACGGCGGATTCGGCATGGTGCTCGATGGTTCGGAACGTGTGGATGCCATCTTGCGCTCGGCCATGCTTTGGGATGTAATGGGCGGAGTGGCCCGACGCTCATGGGCACGCAATCCCAATGCCATGACAGTAAGCGAAGAGTTCAATACGACTCACGCGGATGGATACCATATCACAATTCCATATCTGGTAGACGAAAGTCTCCTCGATTCGATTCTC","6.00","-8.80","73718","MKFTLDNTLPAYPKFVAGIRRAPDRGFRLTPSQTRTALKNALRYIPVELHKELAPEFLEELRTRGKIYGYRFRPEGDLKAKSIDEYEGRCIEGKAFQVMIDNNLCFDIALYPYELVTYGETGQVCQNWMQYRLIMKYLREMTNEQTLVIESGHPLGLFKSKPDAPRVIITNSMMVGLYDNIKDWEIAAQMGVANYGQMTAGGWMYIGPQGIVHGTFNTLLNAGRQKLNIPTGGNLAGKLFVTSGLGGMSGAQPKAADIAGAVSITAEVDSSRIDTRHGQGWVKFRTESKEEAFRMAADARKKGEPCSIAYHGNVVDLLEYALSEGIHIDLLSDQTSCHAVYEGGYCPVTLSFEERTRLLKEDRDEFCRQVDLGLKRHFEVVKALVARGSYFFDYGNAFMKSIYDSGIIEISKNRIDDKDGFIWPSYVEDIMGPELFDYGYGPFRWVCLSGKHEDLVKTDHAAMECIDPDRREQDRDNWIWIRDAEKNQLVVGTQARILYQDALGRMNIALRFNEMVRRGEVGPIMLGRDHHDVSGTDSPFRETSNIKDGSNVMADMAVQCFAGNAARGMSLVALHNGGGVGIGKSINGGFGMVLDGSERVDAILRSAMLWDVMGGVARRSWARNPNAMTVSEEFNTTHADGYHITIPYLVDESLLDSIL","1969003 1967027","TIGR ID: PG1872","urocanate hydratase","Cytoplasm","Residues 78-633 have 35% similarity to AP001513, B. haludurans uroconase (urocanate hydratase).Residues 92-633 have 35% similarity to Z99124, B. subtilis urocanase.Residues 99-647 have 35% similarity to AE005047, Halobacterium sp.urocanase.This sequence is similar to BT2694.","
InterPro
IPR000193
Family
Urocanase
PD025423\"[147-514]TUrocanase
PF01175\"[76-642]TUrocanase
TIGR01228\"[76-648]ThutU
PS01233\"[528-543]TUROCANASE
noIPR
unintegrated
unintegrated
SSF111326\"[70-643]TSSF111326


","No hit to the COGs database.","***** IPB000193 (Urocanase) with a combined E-value of 1.3e-59. IPB000193A 91-122 IPB000193B 127-161 IPB000193C 164-196 IPB000193D 197-234 IPB000193E 303-346 IPB000193G 420-460 IPB000193I 509-539 IPB000193J 540-574 IPB000193K 575-604","Residues 92-633 are 35% similar to a (UROCANATE HYDRATASE UROCANASE) protein domain (PD025423) which is seen in HUTU_BACSU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Mar 6 16:03:07 MST 2001","Wed Dec 17 11:54:24 2003","Tue Mar 6 16:03:07 MST 2001","Tue Mar 6 16:03:07 MST 2001","Tue Mar 6 16:03:07 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 6 16:03:07 MST 2001","-53% similar to PDB:2FKN crystal structure of urocanase from bacillus subtilis (E_value = 4.0E_84);-51% similar to PDB:1X87 2.4A X-ray structure of Urocanase protein complexed with NAD (E_value = 9.9E_83);-51% similar to PDB:1UWL 1.76A STRUCTURE OF UROCANATE HYDRATASE FROM PSEUDOMONAS PUTIDA (E_value = 8.7E_79);-51% similar to PDB:1UWK THE HIGH RESOLUTION STRUCTURE OF UROCANATE HYDRATASE FROM PSEUDOMONAS PUTIDA IN COMPLEX WITH UROCANATE (E_value = 1.1E_78);-51% similar to PDB:1W1U INACTIVE UROCANASE-SA COCRYSTALLIZED WITH UROCANATE (E_value = 4.3E_78);","","","Residues 76 to 642 (E-value = 2.6e-111) place PG1630 in the Urocanase family which is described as Urocanase (PF01175)","Thu May 17 10:38:33 MDT 2001","34541481","","","","","","1","","","PG1872" "PG1631","1969753","1969349","405","ATGGCCGATCATAACGACCGCGGACGCCAAGGCGAAGAGATCGCGCTGAAACACCTCAGGCAGCAAGGCTATCAGATAGAAGCCCTGAACTGGCAGTCGGGGCGGCGCGAGCTGGATATCGTGGCATCCACGTCCAGAGAACTGGTCGTTGTGGAAGTCAAGACTCGTACCGAAGGCTTTCTACTGGCCCCCGAAGAGGCTGTGGACGCACGCAAGCGGCGACTGATTTCCGAATCTGCGCATCACTATGTGCGTATGTACGCCATCGATCTGCCGGTACGCTTCGATGTTATATCTGTAGTTTTGAGTGCTGATGGTTCCTGCAAACGCATCGAACACAGAGAAAATGCCTTCCCTCTTTTGCTGAAACGTTCACAGAGAAGTACACCTCGAAGACGCAGATTA","10.80","7.15","15655","MADHNDRGRQGEEIALKHLRQQGYQIEALNWQSGRRELDIVASTSRELVVVEVKTRTEGFLLAPEEAVDARKRRLISESAHHYVRMYAIDLPVRFDVISVVLSADGSCKRIEHRENAFPLLLKRSQRSTPRRRRL","1969752 1969348","TIGR ID: PG1874","conserved hypothetical protein","Cytoplasm","Residues 6-118 have 39% similarity to AE004857, P. aeruginosa conserved hypothetical protein.Residues 9-100 have 34% similarity to AE001708, T. maritima conserved hypothetical protein.","
InterPro
IPR003509
Family
Protein of unknown function UPF0102
PF02021\"[10-101]TUPF0102
noIPR
unintegrated
unintegrated
SSF52980\"[4-129]TSSF52980


","BeTs to 7 clades of COG0792COG name: Predicted endonuclease distantly related to archaeal Holliday junction resolvaseFunctional Class:  LThe phylogenetic pattern of COG0792 is -----qvce-rhuj---l---Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Mar 6 16:07:26 MST 2001","Tue Mar 6 16:07:26 MST 2001","Tue Mar 6 16:07:26 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 6 16:07:26 MST 2001","-53% similar to PDB:1GEF CRYSTAL STRUCTURE OF THE ARCHAEAL HOLLIDAY JUNCTION RESOLVASE HJC (E_value = );-53% similar to PDB:1IPI CRYSTAL STRUCTURE OF THE ARCHAEAL HOLLIDAY JUNCTION RESOLVASE HJC FROM PYROCOCCUS FURIOSUS FORM II (E_value = );-59% similar to PDB:1YA7 Implications for interactions of proteasome with PAN and PA700 from the 1.9 A structure of a proteasome-11S activator complex (E_value = );-59% similar to PDB:1YAR Structure of Archeabacterial 20S proteasome mutant D9S- PA26 complex (E_value = );-59% similar to PDB:1YAU Structure of Archeabacterial 20S proteasome- PA26 complex (E_value = );","","","Residues 10 to 101 (E-value = 4.4e-09) place PG1631 in the UPF0102 family which is described as Uncharacterised protein family UPF0102 (PF02021)","Tue Mar 6 16:07:26 MST 2001","34541482","","","","","","1","","","PG1874" "PG1632","1970714","1969743","972","ATGTGCCTCGAACCCATAATTGCTCCGATTTCATCCGAGTTGCTCGAGCAGGAGCTGACTGCCGATCGTTTTCTGCGGATGACAAACAAAGCCGGCAATGAGATCTATGTTTTTACGGCCGAAGAAGCTCCGCATTGCATGAAAGAAGTAGGCCGACTGCGAGAAGAAGCCTTTCGGCATTATGGCGGAGGTACTGGCAAGGCGATCGATATAGACGAGTTCGACACCATGCCCGGGAGCTACAAACAGCTGATCGTATGGGATCCGCAAAACAAGGCTATACTCGGAGGCTACCGCTTTATCTATGGGCGGGACGTTGCTTTCGATACCGATGGCAAGCCTTTGCTGGCAACGGCAGAGATGTTTCGCTTCAGTGATGCTTTTTTGCACGATTATCTCCCCTACACAGTCGAATTGGGACGTTCGTTCGTGTCGCTCCAGTACCAATCGACACGGATGGGCACAAAGGCCATTTTTGTGCTGGACAATCTTTGGGACGGTATCGGAGCACTCACTGTAGTCAATCCAGAGGCACTCTATTTCTATGGCAAGGTGACCATGTACAAAGACTATGATCGGCGAGCTCGCAATCTGATCCTGTATTTTCTTCGCAAGCACTTCTCCGATCCGGAAGGCTTGGTCAAGCCTATTCATCCCCTACCGATAGAGATCAGTGCGGAGGACGAAGCCTTGTTCTCCTCATCCGACTTTGACACCAATTACAAGACTCTCAATATAGAAGTGCGCAAGCTGGGTATCAATATCCCTCCTCTCGTGAGTGCATATATAGCTTTGTCTCCGGAGATGCGTGTTTTCGGCACTGCAGTGAATGAGTCTTTCGGAGAGGTGGAGGAAACCGGCATATTCATTGCTGTGGGTAAGATCCTGGAAGAGAAAAAACAACGGCACATAGAGAGCTTCATCCTCAGCCGGAACGAAAAAAAAGGTCTCGACAGTAGCAATGGCCGATCA","5.10","-8.62","36720","MCLEPIIAPISSELLEQELTADRFLRMTNKAGNEIYVFTAEEAPHCMKEVGRLREEAFRHYGGGTGKAIDIDEFDTMPGSYKQLIVWDPQNKAILGGYRFIYGRDVAFDTDGKPLLATAEMFRFSDAFLHDYLPYTVELGRSFVSLQYQSTRMGTKAIFVLDNLWDGIGALTVVNPEALYFYGKVTMYKDYDRRARNLILYFLRKHFSDPEGLVKPIHPLPIEISAEDEALFSSSDFDTNYKTLNIEVRKLGINIPPLVSAYIALSPEMRVFGTAVNESFGEVEETGIFIAVGKILEEKKQRHIESFILSRNEKKGLDSSNGRS","1970713 1969742","TIGR ID: PG1875","hemolysin A","Cytoplasm","Residues 4-308 have 60% similarity to U27587, P. melaninogenica hemolysin A.Residues 34-372 have 31% similarity to AE004135, V. cholerae hemolysin protein.This sequence is similar to BT3459.","
noIPR
unintegrated
unintegrated
SSF55729\"[34-154]TSSF55729


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 4-308 are 60% similar to a (HEMOLYSIN A) protein domain (PD133382) which is seen in Q51888_BBBBB.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Mar 6 16:13:25 MST 2001","Mon Dec 22 11:15:59 2003","Tue Mar 6 16:13:25 MST 2001","","Tue Mar 6 16:13:25 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 6 16:13:25 MST 2001","-50% similar to PDB:1DGJ CRYSTAL STRUCTURE OF THE ALDEHYDE OXIDOREDUCTASE FROM DESULFOVIBRIO DESULFURICANS ATCC 27774 (E_value = );-55% similar to PDB:1MG2 MUTATION OF ALPHA PHE55 OF METHYLAMINE DEHYDROGENASE ALTERS THE REORGANIZATION ENERGY AND ELECTRONIC COUPLING FOR ITS ELECTRON TRANSFER REACTION WITH AMICYANIN (E_value = );-55% similar to PDB:1MG3 MUTATION OF ALPHA PHE55 OF METHYLAMINE DEHYDROGENASE ALTERS THE REORGANIZATION ENERGY AND ELECTRONIC COUPLING FOR ITS ELECTRON TRANSFER REACTION WITH AMICYANIN (E_value = );-46% similar to PDB:1W1W SC SMC1HD:SCC1-C COMPLEX, ATPGS (E_value = );-55% similar to PDB:2BBK CRYSTAL STRUCTURE OF THE QUINOPROTEIN METHYLAMINE DEHYDROGENASE FROM PARACOCCUS DENITRIFICANS AT 1.75 ANGSTROMS (E_value = );","","","No significant hits to the Pfam 11.0 database","Thu May 17 10:42:52 MDT 2001","34541483","","","","","","1","","","PG1875" "PG1633","1971553","1970729","825","ATGCAAGAGAAGCAGCATATTCATATTGGAGAAATTATCCAACGGCTGAGTGGCAGGAAACTCCCACAGCCGCTTATCCGTTTGCTGGAGCGTCTGATACATCAGGACGAGATAAACGATATACTCGACCGGTACGGACACCTTGAGGGTGTGGACTTTATGACTGCTTTGGTCGGATATTTTCACGTCGATATAGATTGGAATGGAGCAGATAGACTGCCGTCCGACAAGCGGTGCCTTTTTGTCTCCAATCATCCGCTTGGCGGGTTGGACGGTATCTGTCTCAGCCACCTGATCGGTAGTCACTATGATTCGGACGTGCGCTATATCGTCAATGATATCCTCTTTCATCTGCGACCGCTTCGTAAGATTTTCGTTCCCGTCAATACCCGTGGCAGACAGAAGCGCGAGAGTATAGATCGGCTGCAGGAAGCTTTGGAGAGCGATTTGCCCGTTATCACTTTCCCGGCCGGCTTTTGTTCCCGTCTGATCGAAGGTAAGGTCCAGGATACCCCGTGGAAGAAGAGCTTTGTCCGTCAGGCCTACGCCAGCAAACGGGATATAGTTCCACTTTTTTTCGATGGACTTAATTCAAAGCGTTTCTACCGGATAGAGCGTCTCCGTCAGCTCCTTGGTCTTAAGTTCAATATCGGGATGGCTTTGCTGCCGGATGAAATGTTTCGGAGCAAGGGACGCCATTTTCGCGTATTCGCAGGCCGGCCTATTCCATGGCAATCTCTTGCGTCTGCCCCCCGAGATACGGCCGAGCAGGCACTTCATATCCGTTCACTGGTATATGACCTCAGCCCGTCGGCCTTAAAGAAA","10.30","11.51","31773","MQEKQHIHIGEIIQRLSGRKLPQPLIRLLERLIHQDEINDILDRYGHLEGVDFMTALVGYFHVDIDWNGADRLPSDKRCLFVSNHPLGGLDGICLSHLIGSHYDSDVRYIVNDILFHLRPLRKIFVPVNTRGRQKRESIDRLQEALESDLPVITFPAGFCSRLIEGKVQDTPWKKSFVRQAYASKRDIVPLFFDGLNSKRFYRIERLRQLLGLKFNIGMALLPDEMFRSKGRHFRVFAGRPIPWQSLASAPRDTAEQALHIRSLVYDLSPSALKK","1971573 1970728","TIGR ID: PG1876","conserved hypothetical protein","Cytoplasm","Residues 49-270 have 27% similarity to AE004394, V. choleraec conserved hypothetical protein.","
InterPro
IPR002123
Domain
Phospholipid/glycerol acyltransferase
PF01553\"[64-194]TAcyltransferase
SM00563\"[79-196]TPlsC
noIPR
unintegrated
unintegrated
SSF69593\"[60-191]TSSF69593


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 65-202 are 27% similar to a (ACYLTRANSFERASE TRANSFERASE PROTEIN PHOSPHOLIPID) protein domain (PD000989) which is seen in Q53145_RHOSH.","","Thu Jun 14 12:20:39 MDT 2001","","Thu Jun 14 12:20:39 MDT 2001","Thu Jun 14 12:20:39 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:20:39 MDT 2001","Thu Jun 14 12:20:39 MDT 2001","","","Tue Mar 6 16:23:11 MST 2001","Tue Jun 26 08:27:37 MDT 2001","Tue Mar 6 16:23:11 MST 2001","","Tue Jun 26 08:27:37 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 25-274 have 30% similarity to PG1810, conserved hypothetical protein.","Tue Jun 26 08:27:37 MDT 2001","Tue Mar 6 16:23:11 MST 2001","-81% similar to PDB:1IWP Glycerol Dehydratase-cyanocobalamin Complex of Klebsiella pneumoniae (E_value = );-81% similar to PDB:1MMF Crystal structure of substrate free form of glycerol dehydratase (E_value = );-50% similar to PDB:1ECB ESCHERICHIA COLI GLUTAMINE PHOSPHORIBOSYLPYROPHOSPHATE (PRPP) AMIDOTRANSFERASE COMPLEXED WITH 2 GMP, 1 MG PER SUBUNIT (E_value = );-50% similar to PDB:1ECC ESCHERICHIA COLI GLUTAMINE PHOSPHORIBOSYLPYROPHOSPHATE (PRPP) AMIDOTRANSFERASE COMPLEXED WITH MN-CPRPP AND 5-OXO-NORLEUCINE (E_value = );-50% similar to PDB:1ECF ESCHERICHIA COLI GLUTAMINE PHOSPHORIBOSYLPYROPHOSPHATE (PRPP) AMIDOTRANSFERASE (E_value = );","","","Residues 64 to 194 (E-value = 2e-08) place PG1633 in the Acyltransferase family which is described as Acyltransferase (PF01553)","Tue Jun 26 08:27:37 MDT 2001","34541484","","","","","","1","","","PG1876" "PG1634","1972940","1971585","1356","ATGAAACAGACTTTTCGCTTTATCAAACCAATTGAACGGATTACTCACCTGAAGCCGAATGCTACGATGATGTTGTTCTTGGCTTCGGTGTTGGCAGTCATCATGGCTAATAGTTCGTTGAGTACTATCTATCATGAAATTTTAGAGTACCCTATCAATCTTACGATCGGAGGTCATGAGGTCTTTTCTCATCATGGAGAGACCATGACCTTGCTCCAGTTTGTGAATGATGTGCTGATGGTCATTTTCTTCCTTGCTGTCGGTTTGGAGATCAAGCAGGAGATTTTGGTCGGCGAATTGTCTTCTTTCAAGAAAGCTATGCTCCCCATTGTAGGAGCCATAGGAGGGATGATCGTCCCTGTCCTTTTCTTCCTGCTGGTTGTTCATGAAGGCCCTGGTGCAAGAGGTGCTGCCATCCCTATGTCTACGGATATAGCTTTTGCCTTGGCGGCCTTGGCTGTTTTGGGAAGTCGGGTTCCGGCAAGCCTCAAGGTATTCCTGACGGCTTTGGCTGTTGCCGACGATATAGGTGGTATTATCGTTATTGCGCTCTTCTATAGTTCCCATATCAACATCGGGATGTTGGCCATTGCCTTCGGTATCCTATTCATCATGTATTTGATGGGGCGTATGCATGTGAGCAACTTAGGGCTTTACTTCGTCTGTACTTTCTTTGTTTGGCTCTTTTTCCTACAGAGCGGTATCCATACCACAATAGCCGGTGTGCTGGCAGCTTTCATGATTCCGGCCCGTCCTGGACTACATGCCAAGAATCTTCGTGCCGAGATGCGTTCCCTTTTCGAGGCAATGCCCAATGACAAGATACGACAATCAGGTAGCTCTCTGATCTTGAGCCATAACCAAATCAACGTAATCAACTCCATGCGTAAGATTGCGCGTAAGGCTATAAGTCCTATGCAGCTCATGGAAGAGTATCTCAGCCCGATAGTAGGCTACTTCGTCTTGCCTCTCTTTGCCTTTGCCAATGCTGGCATCACGCTCGGAGGAGTCACGGCAGATGCCTTGTGGGGCGTGCCGATGGCTGTATTCTTGGGCTTGTTTGTCGGCAAACCTTTGGGTATTTACTTTTTCACCTATGGTTTTGTCAAGATGAGGCTCTGCCCTTGGCCTGAAGGAATGAGCCGCCTCAACCTGATGGCAGTCTCCTTATTTGGAGGTATCGGTTTTACTGTTTCCCTCTTTATCGCTACCCTTTCTTACGCCGGAGCCGAGCATTTGCTCTTCCTCAACGAGGCCAAGCTCGGTATCTTCGTTGCTTCGATTTTCGCTGCTCTGGTCGGTATCGTTACATTGCGATATGAGCTGAATCTGGAAAGCGCCAAGGCGCAAAAGAGT","10.00","8.79","49245","MKQTFRFIKPIERITHLKPNATMMLFLASVLAVIMANSSLSTIYHEILEYPINLTIGGHEVFSHHGETMTLLQFVNDVLMVIFFLAVGLEIKQEILVGELSSFKKAMLPIVGAIGGMIVPVLFFLLVVHEGPGARGAAIPMSTDIAFALAALAVLGSRVPASLKVFLTALAVADDIGGIIVIALFYSSHINIGMLAIAFGILFIMYLMGRMHVSNLGLYFVCTFFVWLFFLQSGIHTTIAGVLAAFMIPARPGLHAKNLRAEMRSLFEAMPNDKIRQSGSSLILSHNQINVINSMRKIARKAISPMQLMEEYLSPIVGYFVLPLFAFANAGITLGGVTADALWGVPMAVFLGLFVGKPLGIYFFTYGFVKMRLCPWPEGMSRLNLMAVSLFGGIGFTVSLFIATLSYAGAEHLLFLNEAKLGIFVASIFAALVGIVTLRYELNLESAKAQKS","1972939 1971584","TIGR ID: PG1877","Na+/H+-exchanging protein (Na+/H+ antiporter)","Inner membrane, Cytoplasm","Residues 23-438 have 39% similarity to AE001567, H. pylori NA(+)/H(+) ANTIPORTER 1.Residues 33-432 have 38% similarity to D10483, E.coli antiporter affecting protein.Residues 6-443 have 38% similarity to 18171751, S. enteritidis nhaA gene.This sequence is similar to BT0634.","
InterPro
IPR004670
Family
Na+/H+ antiporter NhaA
PF06965\"[25-438]TNa_H_antiport_1
TIGR00773\"[16-438]TNhaA


","BeTs to 3 clades of COG0475COG name: K efflux system, membrane domainFunctional Class: PThe phylogenetic pattern of COG0475 is AmtKyQ-CEBrhUJ--o---xNumber of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","Residues 44-439 are 39% similar to a (ANTIPORTER NA+/H+ PROTEIN TRANSMEMBRANE INNER MEMBRANE) protein domain (PD011696) which is seen in NHAA_ECOLI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu May 17 10:45:55 MDT 2001","Tue Dec 2 17:28:35 2003","Thu May 17 10:45:55 MDT 2001","","Tue Mar 6 16:29:34 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 6 16:29:34 MST 2001","-57% similar to PDB:1ZCD Crystal structure of the Na+/H+ antiporter NhaA (E_value = 9.6E_79);-45% similar to PDB:2GW1 Crystal Structure of the Yeast Tom70 (E_value = 9.6E_79);","","","Residues 11 to 438 (E-value = 3.8e-146) place PG1634 in the Na_H_antiport_1 family which is described as Na+/H+ antiporter 1 (PF06965)","Thu May 17 10:45:55 MDT 2001","34541485","","","","","","1","","","PG1877" "PG1635","1973071","1974540","1470","ATGGAACATCCCTTGGAAATTTATAATACGCTCCATCGCAAGAAAGAGCGCTTCGAGCCTATCCATAAACCTCATGTCGGACTCTATGTGTGTGGCCCTACGGTCTACGGAGATGCCCACTTGGGACATGCCCGTCCGGCCATCACATTCGATCTACTATACCGCTATCTCCGGCATTTGGGCTATCAAGTGCGCTACGTACGCAACATTACCGATGTAGGCCATCTGGAGCACGATGCAGACGAAGGGGAAGACAAGATCGCCAAGAAGGCACGCCTCGAACAGCTTGAACCGATGGAAGTAGTGCAGTACTACCTCACGCGTTATCGCCATGCCATGGAAGCTCTCAATGTGTTGCCTCCGAGTATAGAACCGATGGCTTCGGGTCATATCATCGAACAGATCGAACTGGTCAAGCAAATACTGAAAGCGGGCTACGCCTATGAAAGCTGCGGATCGGTCTATTTCGATGTGGAAAAATACAATCAAGACCATCGCTACGGAGTATTGAGCGGTCGGAACATAGAAGAGATGATCAATAATACCCGCAGACTCGATGGGCAGGACGAAAAGCGAAACGGCGTAGACTTTGCTCTCTGGAAGGCTGCTCAGCCCGAGCATATCATGCGTTGGCCGAGTCCTTGGGGTATGGGATTCCCAGGGTGGCACTGCGAATGTACGGCCATGGGGCGCAAGTATCTCGGTGAAGAGTTCGATATACATGGTGGAGGAATGGACCTCGTATTTCCCCATCACGAATGTGAGATAGCACAGGCCGTTGCCTCACAGGGGCACCCTATCGTGCGCTATTGGATGCACAACAACATGATAACCATCAACGGGCAGAAAATGGGTAAAAGCTTGGGCAACTTCATCACACTCGAAGAGTTCTTCTCCGGAGCGCATCCGAGTCTTAACAAAGCTTATTCACCCATGACCATACGCTTCTTTATTCTCGGAGCCCACTATCGAGGCACTGTAGACTTCAGCAATGAAGCTCTGGAAGCGGCAGAGAAGGGTTTGGAGCGCTTGCTGGATGCAGCAGCCTTGCTCGATGGATTGAAGACTGCCGACACGACCTCCGTAGAGGTTGGCGATCTGCGTAAGCGTTGCTACGATGCCATGAACGATGACCTGAACAGTCCAATGGTAATAGCAGCCCTTTTCGATGCAGCGCGCGCAATTAATGCTGTACACAATGGACAAGGTACCATTACTTCTTCCAACTTAGAGGAACTGCGTACTACATTCCGCCTCTTCCTGTTCGACCTGCTTGGTATGCGCGATGAAAGGGCGTCTTCAGCCGGTGGCAGCGAAGCCTTCGGCAAAGCGATGGATCTGCTCCTAAGTATCCGAGCCGAAGCCAAAGCTCGTAAGGATTGGGCGACAAGCGATAAGATCCGCGACGAACTCACGGCTCTGGGATTTACGATAAAAGATACGAAAGACGGTGCAGAGTGGAAATTGAAT","6.40","-7.94","55428","MEHPLEIYNTLHRKKERFEPIHKPHVGLYVCGPTVYGDAHLGHARPAITFDLLYRYLRHLGYQVRYVRNITDVGHLEHDADEGEDKIAKKARLEQLEPMEVVQYYLTRYRHAMEALNVLPPSIEPMASGHIIEQIELVKQILKAGYAYESCGSVYFDVEKYNQDHRYGVLSGRNIEEMINNTRRLDGQDEKRNGVDFALWKAAQPEHIMRWPSPWGMGFPGWHCECTAMGRKYLGEEFDIHGGGMDLVFPHHECEIAQAVASQGHPIVRYWMHNNMITINGQKMGKSLGNFITLEEFFSGAHPSLNKAYSPMTIRFFILGAHYRGTVDFSNEALEAAEKGLERLLDAAALLDGLKTADTTSVEVGDLRKRCYDAMNDDLNSPMVIAALFDAARAINAVHNGQGTITSSNLEELRTTFRLFLFDLLGMRDERASSAGGSEAFGKAMDLLLSIRAEAKARKDWATSDKIRDELTALGFTIKDTKDGAEWKLN","1973070 1974539","Cysteinyl-tRNA synthetase is cytoplasmically located monomerbelonging to class-I aminoacyl-tRNA synthetases. Reaction: ATP +l-cysteine + tRNA(cys) = AMP + pyrophosphate +l-cysteinyl-tRNA(cys). Similarity is strong to methionyl-tRNAsynthetase.TIGR ID: PG1878","cysteinyl-tRNA synthetase","Cytoplasm","PG1635 is similar to CT782, a predicted cysteinyl tRNA synthetase, and to BT3351.Numerous significant hits in gapped BLAST to cysteinyl-tRNA synthetase; e.g. residues 5-488 are 46% similar to AE002009 of Deinococcus radiodurans, residues 5-488 are 40% similar to AE000721 of Aquifex aeolicus, residues 5-488 are 40% similar to AE006134 of Pasteurella multocida.","
InterPro
IPR002308
Family
Cysteinyl-tRNA synthetase, class Ia
TIGR00435\"[5-490]TcysS
InterPro
IPR009080
Domain
Aminoacyl-tRNA synthetase, class 1a, anticodon-binding
SSF47323\"[341-433]TtRNAsyn_1a_bind
InterPro
IPR014729
Domain
Rossmann-like alpha/beta/alpha sandwich fold
G3DSA:3.40.50.620\"[22-334]TRossmann-like_a/b/a_fold
InterPro
IPR015273
Domain
Cysteinyl-tRNA synthetase, class Ia, DALR
PF09190\"[370-436]TDALR_2
InterPro
IPR015803
Domain
Cysteinyl-tRNA synthetase, class Ia, N-terminal
PR00983\"[28-39]T\"[64-73]T\"[208-226]T\"[239-260]TTRNASYNTHCYS
PF01406\"[17-339]TtRNA-synt_1e
InterPro
IPR015804
Domain
Cysteinyl-tRNA synthetase, class Ia, C-terminal
PTHR10890\"[207-430]TCys_tRNA-synt_1a
noIPR
unintegrated
unintegrated
SSF52374\"[4-340]TSSF52374


","BeTs to 15 clades of COG0215COG name: Cysteinyl-tRNA synthetaseFunctional Class: JThe phylogenetic pattern of COG0215 is a--kyqvcebRhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** PR00983 (Cysteinyl-tRNA synthetase signature) with a combined E-value of 8.9e-40. PR00983A 28-39 PR00983B 64-73 PR00983C 208-226 PR00983D 239-260","Residues 270-396 are 33% similar to a (SYNTHETASE AMINOACYL-TRNA PROTEIN LIGASE BIOSYNTHESIS) protein domain (PD000476) which is seen in O58370_PYRHO.Residues 127-262 are 51% similar to a (SYNTHETASE CYSTEINYL-TRNA AMINOACYL-TRNA) protein domain (PD186140) which is seen in SYC_MYCTU.Residues 5-123 are 46% similar to a (SYNTHETASE CYSTEINYL-TRNA AMINOACYL-TRNA) protein domain (PD118283) which is seen in SYC_TREPA.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Mon Dec 22 10:39:27 2003","Wed Apr 18 15:15:33 MDT 2001","Mon Dec 22 10:39:27 2003","Wed Apr 18 15:15:33 MDT 2001","Wed Apr 18 15:15:33 MDT 2001","Wed Apr 18 15:15:33 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Thu Apr 6 16:02:51 MDT 2000","Wed Apr 18 15:15:33 MDT 2001","-54% similar to PDB:1LI5 Crystal Structure of Cysteinyl-tRNA Synthetase (E_value = 5.4E_91);-54% similar to PDB:1LI7 Crystal Structure of Cysteinyl-tRNA Synthetase with Cysteine Substrate Bound (E_value = 5.4E_91);-54% similar to PDB:1U0B Crystal structure of cysteinyl-tRNA synthetase binary complex with tRNACys (E_value = 5.4E_91);","","","Residues 17 to 339 (E-value = 2e-135) place PG1635 in the tRNA-synt_1e family which is described as tRNA synthetases class I (C) catalytic domain (PF01406)","Wed Apr 18 15:15:33 MDT 2001","34541486","","","Avalos,J., Corrochano,L.M. and Brenner,S. 1991. Cysteinyl-tRNA synthetase is a direct descendant of the first aminoacyl-tRNA synthetase. FEBS Lett. 286(1-2): 176-180. PubMed: 1864365.Eriani G, Dirheimer G, Gangloff J. 1991. Cysteinyl-tRNA synthetase: determination of the last E. coli aminoacyl-tRNA synthetase primary structure. Nucleic Acids Res 19(2): 265-9. PubMed: .Hou,Y.M., Shiba,K., Mottes,C. and Schimmel,P. 1991. Sequence determination and modeling of structural motifs for the smallest monomeric aminoacyl-tRNA synthetase. Proc. Natl. Acad. Sci. U.S.A. 88(3): 976-980. PubMed: 1992490.","","Thu Apr 6 16:06:27 MDT 2000","1","","","PG1878" "PG1636","1974594","1975610","1017","ATGGCTTATTTCTTTAAAAATCTCGTCTTTGAAGGGGGTGGTGTGAAAGGCATTGCCTATATCGGGGCCCTCGAAGTGCTGCAGGAAGAAAAGATTTTCCCCAAAATCAAACGAGTAGCCGGCACATCGGCCGGTGCCATCATGGCTGTGCTCATCGGACTGGGTTATACACCGAGTGAGATCAAAGAGATAATGTGGTGCCTCAATTTCAAGAATTTCATGGACGATTCGTGGGGTATCATTCAAGATACGAAACGGCTGATCGAGAAGTTCGGTTGGTACAAAGGCGATTTCTTCCGCAATTGGCTTGGCGACCTGATCAAGGCCAAGACCGGCAACAGCGAATCGACCTTTGCGGATTTGGCTGCAATGAAAGGAGAAAACAAATTTCTCGACATTTCTCTCATCGGCACCAATCTTTCTACAGGCTTCTCAGAGATCTTTTCGGCAGAACATACACCTCGCATCTGTATAGCCGATGCTGCTCGTATCTCTATGTCCATTCCGCTGTTTTTCGCTGCTAAGCGCAACTTCCGAAACGATGTATATGTGGACGGCGGTATGCTGAACAACTATCCCGTCAAGGTGTTTGATCGTACCAAGTATGTAACCAAGAACTTTACACGAACGGGCTACTATGAACCTATCAATAAGAAGCTGGAGAAACGCCCCAGGAAGATTGCCGATTACGTATACAACAAAGAAACATTGGGCTTCCGACTCGACAGCAAAGAGAAGATAGCCTTCTTCAGGGACAACGCAGAACCTCCTCATCGAGATATCGACAGCTTCTTTGACTATACCGTGTCGCTATTCGGCACTCTGCTCTCTGCTCAAGACGATGTACACCTGCACAGTGATGACTGGCAACGCACCATTTACATCGATACGCTGGGAGTAAAGACTACGGATTTTGCCATCAGCGATGCCCAAAAAAAAGCTTTGCTGGAATCCGGCCGCTCATACACTCAGTCATATTTGGAGTGGTACAATAACAGCGAAGAAAAAGTCAACAAA","8.60","2.89","38768","MAYFFKNLVFEGGGVKGIAYIGALEVLQEEKIFPKIKRVAGTSAGAIMAVLIGLGYTPSEIKEIMWCLNFKNFMDDSWGIIQDTKRLIEKFGWYKGDFFRNWLGDLIKAKTGNSESTFADLAAMKGENKFLDISLIGTNLSTGFSEIFSAEHTPRICIADAARISMSIPLFFAAKRNFRNDVYVDGGMLNNYPVKVFDRTKYVTKNFTRTGYYEPINKKLEKRPRKIADYVYNKETLGFRLDSKEKIAFFRDNAEPPHRDIDSFFDYTVSLFGTLLSAQDDVHLHSDDWQRTIYIDTLGVKTTDFAISDAQKKALLESGRSYTQSYLEWYNNSEEKVNK","1974593 1975609 [Shorter 2119 104 99]","TIGR ID: PG1879","conserved hypothetical protein","Cytoplasm, Outer membrane","Residues 9-331 have 33% similarity to AP001516, B. halodurans BH2805~unknown conserved protein.Residues 9-328 have 30% similarity to D84432, B. subtilis unknown conserved protein.Residues 7-334 have 27% similarity to AL021899, M. tuberculosis hypothetical protein Rv2037c.","
InterPro
IPR002641
Family
Patatin
PF01734\"[8-198]TPatatin
noIPR
unintegrated
unintegrated
G3DSA:3.40.1090.10\"[8-196]TG3DSA:3.40.1090.10
SSF52151\"[1-286]TSSF52151


","BeTs to 6 clades of COG1752COG name: Putative phosphoesterases, homologs of neuropathy target esteraseFunctional Class:  RThe phylogenetic pattern of COG1752 is ----yqv-EBR------l--xNumber of proteins in this genome belonging to this COG is 2","***** IPB001423 (Uncharacterized protein family UPF0028) with a combined E-value of 1.5e-06. IPB001423A 6-51 IPB001423B 133-169 IPB001423C 179-210","Residues 9-328 are 30% similar to a (PROTEIN TRANSMEMBRANE INTERGENIC REGION) protein domain (PD004383) which is seen in YQHO_BACSU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Mar 6 16:37:42 MST 2001","Tue Mar 6 16:37:42 MST 2001","Tue Mar 6 16:37:42 MST 2001","Tue Mar 6 16:37:42 MST 2001","Tue Mar 6 16:37:42 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 8-256 have 26% similarity to PG0801, conserved hypothetical protein.","Tue Mar 6 16:37:42 MST 2001","Tue Mar 6 16:37:42 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 8 to 198 (E-value = 5.5e-36) place PG1636 in the Patatin family which is described as Patatin-like phospholipase (PF01734)","Tue Mar 6 16:37:42 MST 2001","34541487","","","","","","1","","","PG1879" "PG1637","1975624","1976631","1008","ATGGATACCCCCCCCACGGTCTTCTCTATTATTATCCCCGTTTATAATCGCCCCGACGAAGTGCGGGAGCTGCTGGAGAGTCTGCTTATACAGACGAATAGCGACTTTGAAGTGATCATCGTAGAAGATGGTTCGTCTGTGTGCTGCGACAAAGAAGTGGATCGCGTCAGAGAACTTCTCCGAATACAGTATGTAAGAGTGCCGAATGGAGGACCGGCTGCTGCGCGCAACATTGGTGCACGAATGGCTGTGGGCGAATATCTGTTGATATTGGACTCGGATGTAGTACTGCCGAGCGGTTATATAGCCGCAGTAAAAAAAAGGATCGAACAGATGCAAGCAGATGCTTTCGGCGGCCCTGATGCAGCAGCAGAAGGATTCTCACCCATACAAAAAGCCATTAACTATGCGATGACCTCTTTCTTCACGACCGGAGGCATTCGTGGGGGTAGAAGAGTACGACTGGACAAGTTCTATCCTCGCAGTTTCAATTTTGGCTGCAAACTTTCGGTCTATCGGCAACTCGGTGGTTTTTCGGAAGAGATGCGCTTCGGTGAAGATATTGATTTTAGTCTGCGTCTCTTTAAGGCCGGATACAACGTATGCTTGTTTCCGGAAGCCTTTGTTTTCCATAAACGGCGAATCGATTTTAAGAAGTTCTTCCGTCAGGTGTACAACTCCGGTATTGCCCGTATTCATTTGCAAAGACGGCATCCCGGGAGTATGAAGCCCGTACACATACTGCCGGCCCTCTTTACGTTAGGCTCTGTAATACTGGCTGTCGGACAGTTCTTTTGTCCATGGTCATTGCTTCCTTTGTTACTTTTGGCACTGCTTTTCTTATTGGATGCGTGGCATACCAATCGCTCCCTACGCATAGCCATTCTTGCCGTACCGGCTTCTTTCGTGCAGCTATGGGGATACGGTAGCGGATTTCTGGTTGCTTGCTGGAGATGCTATGTATTGGGACACCAAGAGTTCAGAGCCTTCGACAAAACTTTTTACAAC","9.30","9.12","38019","MDTPPTVFSIIIPVYNRPDEVRELLESLLIQTNSDFEVIIVEDGSSVCCDKEVDRVRELLRIQYVRVPNGGPAAARNIGARMAVGEYLLILDSDVVLPSGYIAAVKKRIEQMQADAFGGPDAAAEGFSPIQKAINYAMTSFFTTGGIRGGRRVRLDKFYPRSFNFGCKLSVYRQLGGFSEEMRFGEDIDFSLRLFKAGYNVCLFPEAFVFHKRRIDFKKFFRQVYNSGIARIHLQRRHPGSMKPVHILPALFTLGSVILAVGQFFCPWSLLPLLLLALLFLLDAWHTNRSLRIAILAVPASFVQLWGYGSGFLVACWRCYVLGHQEFRAFDKTFYN","1975506 1976630 [Bad Olap 2118 104 0]","TIGR ID: PG1880","possible beta 1,3-glucosyltransferase","Inner membrane, Cytoplasm","Several weak hits to putative glycosyltransferases using gapped BLAST. Residues 9-194 have 32% similarity to AF019746, E. coli putative beta 1,3-glucosyltransferase WaaV. Residues 9-240 have 27% similarity to AL445066, conserved hypothetical protein Thermoplasma acidophilum. Also weakly similar to U61226, unknown protein of Leptospira interrogans.This sequence is similar to BT3694.","
InterPro
IPR001173
Domain
Glycosyl transferase, family 2
PF00535\"[9-176]TGlycos_transf_2
noIPR
unintegrated
unintegrated
G3DSA:3.90.550.10\"[8-214]TG3DSA:3.90.550.10
PTHR22916\"[14-214]TPTHR22916
SSF53448\"[7-214]TSSF53448


","BeTs to 14 clades of COG0463COG name: Glycosyltransferases involved in cell wall biogenesisFunctional Class: MThe phylogenetic pattern of COG0463 is AMTKYQVCEBRHujGPo---XNumber of proteins in this genome belonging to this COG is 8","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 12:20:54 MDT 2001","","Thu Jun 14 12:20:54 MDT 2001","Thu Jun 14 12:20:54 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:20:54 MDT 2001","Thu Jun 14 12:20:54 MDT 2001","","","Tue Jun 5 11:15:38 MDT 2001","Fri Dec 26 13:31:50 2003","Thu May 17 10:55:39 MDT 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 4-134 have 32% similarity to PG0103 a glycosyltransferase.Residues 1-201 have 28% similarity to PG0676 a glycosyl transferase","Tue Jun 26 08:25:01 MDT 2001","Tue Mar 6 16:44:13 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 9 to 176 (E-value = 8.3e-28) place PG1637 in the Glycos_transf_2 family which is described as Glycosyl transferase (PF00535)","Tue Jun 26 08:25:01 MDT 2001","34541488","","","","","","1","","","PG1880" "PG1638","1976667","1978106","1440","ATGCTTACGAAACTAAAAACACTGCTACTTGGCTGCTCTTTGGCTTGTATTGGATTTTCTTGCTCCAATCATCCGGTACTGACGAATGCCGATGATGTTGAACAACCATTGGATTCGGGTTATATCACCCTTGATCTTAGATCCAACCTACACCTCTCCAGAAAGGGTGGTACACATGATCCACTTCAGTCTGTTCGTCGCATTACCTTCTTGTTCTTTCATGAGACTGATTCAAAACTGCTGCTAAGTCGAACCGTTGAACCGACAAGTGACCTCTCCTTCGATCTCAAAATACCGAAACAGAACTATCGTCTGGCCGTGTTGGTCAATAGTGGAAGTTCCTATGCAGCGATTATTCCGGAAATACTATTACCTACAACAGCCATTCAAGCTACGAGTCAGACGCTTTTTGAGTCATTCGCTGCATATGAGACCGGTAATATTACATCCGAGTCGGAACATTCCGTTACCATGGCCAACGATCAGGGGTTGATCAAATTGCTGTCTACTCAGATCGTAGACAAAAAGAGCCAGCTTTCCGAGGCATCACGGTTGTCCGTAAACGTGGAACCGTGTCTGGCACGTGTATTGGTCGTAGGGAAACCGACAATATCGGGCGGAGAGTACACAGGCGATGTTTCCTGCTATGTCATTGATGTAGTACCACAAAGGATATACCCCTTGCGCCATTTGGCCAAACTCTCCAGTGGCACTAATGAAGCCTATGGAGACAATTCGCCTCTTGCTGACCGTTATGCCTCAAGTTGGGCAGAGGAATCGATAGCCGCCGGTGTAGCATACAACAACGTCTATGGGTATGTCAAGGCAGACATGTTTGACAATCCTGTGGCAGCAACCAAGATGCAGGAGAAAAAGACGGACTTCAATCTGAACCAAGTAGCGATCTATACAAAAGAATCGACCGTAAATCCTAAAAACTACTTTACGGCTTATGTGCCGAGAGTAGTCTTGCGTGCAAAATACGTTCCTCATGGCATCCCCGGCGTGAAGCCGGATGAAGGCTGGATCGAATTTCAGGGTAGAAAGATGAGTCTGGAGCAGTTCAAAAAATACGTAGACAATCCGGTTTCTGCCGGTATGGCTCTGGCCGACAGCATCAAGAAGGCGAAAGCTGACAATTCATTGGTCTATACAGGTGGATTCGTCAGTCATGGAATACAGTTCTATTACAAATCGCAGAATTATTATGCCATCCCTATTCGCCATTTCGATGATGAAAAAGCTCCTAACAAAGATTCCTACGGGCGTTTCGGCCTCGTACGAAACAATGAGTATATCCTCTCGGTAAAGTCCATTACAGGAGCCGGTTCACCGATTGTTCCGCCTGTTTCGACCACCGAAGCAATCGAAAAGGAGGGCTATTTACCTGCTTCTATTGCAGTCAATCAGACAACAGCTCACGAGCAGGACGTGGATTTG","6.70","-1.80","52763","MLTKLKTLLLGCSLACIGFSCSNHPVLTNADDVEQPLDSGYITLDLRSNLHLSRKGGTHDPLQSVRRITFLFFHETDSKLLLSRTVEPTSDLSFDLKIPKQNYRLAVLVNSGSSYAAIIPEILLPTTAIQATSQTLFESFAAYETGNITSESEHSVTMANDQGLIKLLSTQIVDKKSQLSEASRLSVNVEPCLARVLVVGKPTISGGEYTGDVSCYVIDVVPQRIYPLRHLAKLSSGTNEAYGDNSPLADRYASSWAEESIAAGVAYNNVYGYVKADMFDNPVAATKMQEKKTDFNLNQVAIYTKESTVNPKNYFTAYVPRVVLRAKYVPHGIPGVKPDEGWIEFQGRKMSLEQFKKYVDNPVSAGMALADSIKKAKADNSLVYTGGFVSHGIQFYYKSQNYYAIPIRHFDDEKAPNKDSYGRFGLVRNNEYILSVKSITGAGSPIVPPVSTTEAIEKEGYLPASIAVNQTTAHEQDVDL","1976666 1978105","TIGR ID: PG1881","conserved hypothetical protein","Outer membrane, Periplasm","This sequence corresponds to gi:34397806 in Genbank.Its nearest neighbor in the NR database is gi:53713415 from Bacteroides fragilis YCH46.","
noIPR
unintegrated
unintegrated
PS51257\"[1-21]TPROKAR_LIPOPROTEIN


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Mar 8 15:51:50 2005","Tue Mar 8 15:51:50 2005","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 8 15:51:50 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541489","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Tue Mar 8 15:51:50 2005","","1","","","PG1881" "PG1639","1981085","1979064","2022","GTGGCTCAACGACATTCGGAAGCCTTCGAGCGTTGGCATCGTGACAAATTCAGCCTTTTCATTCATTACGGCCTCTACAGTGAGCTTGGAGGGGTTTGGCAAGGCAAACCAGTGAAGAACGGATATAGCGAACAGATCTACTCTTTCGGAATACGCGACATGAAGCAATACGAGCCGGTGGCCAAGCGGTTCCGCCCCGACAGATGGGATGCCGATGCCATAGTAGCCTTAGCTCGGAAAGCAGGGATGAAGAGTATCGTGTTTACTTCCAAGCATCACGATGGCTTCTGCATGTATGGCTCGGCTGAGACTCCATTCAATATAGTGGAGGCCACTCCTTCGCGTCGCGATGTGATGAAGGAATTGAGCGATGCTTGTGAGCGTTCGGGTATGAAGTTCGGCGTTTACTTCTCTCTTATTGATTGGCATTTCCCGGAAGCCAATCCGATCAGCGATCACAATGCTGATCGGATTACTCCGGCACATCACCAATACAATATGCGTCAGGTCAGAGAGATCCTCACGGGCTACGGCCCTGTCAGCGAGTTGTGGTTCGATATGGGATCGCTTACGCCGAAGCAGAGTGAAGAGTTGTATTGTTTGGTGCATGAGCTACAGCCCGATTGTATGGTTAGCGGACGCTTAGGTAATGACCGAGCGGACTTTGCCGTCATGGGAGACAATGAACTTCCTACCGAACCGATTGCCATTCCTTGGCAGACGGCGGCATCTATGTTCCCTGAGACATGGGGCTATCGCTCATGGCAGGAGAGAGGCTCTATTCGGGACAAAGCTCGCGAGAAGTTCGAAGATTTGGTGCGAGTGGTGTGTCGTGGGGGTAATTATCTGCTGAACATCGGTCCTGAAGGCAATGGCTCCATATTGCCTTATGAATCCGAAGTGCTGCGAACCATGGGCGAATTTCTCGATATGTATGGAGAAGGTATTTACGGTACGGAACGCTCTCCTTTTCCTGAACTCTTGCCCTTTGGCGAAGTTTCGGTTCGTGATTCCATGCTTTATCTGTTTGTTCGTCCGGATATGGCCGGCAAGGAGGTATTCATTCCGGTGAATGGAGAATTTTTGGAGGAGGTGAGCAATTTGACCAACGCTTCACCGCTCAATATGGACATTCGCAAGACGGGGGTTCGTATCCGAATGCCTGCAAGTATGCCTGAGTCTTTTCTTGTGCTGGCTTTGGCTTTTGACAGAAACGATTTTGTACTCGCAGGCCGACCTCAAGGCTATCCCCTGCATATGGCCAATAGCTCTCGGATATACGGCCATAGCTGCTGGGACTACTATACGGGCTTCAAGAGTATAACGGGCATGAAGTGGCAAGCGGTTTCTGCTCCGCGTGCTATTATATATACGGACATGGAAGCCGGCAAGACACTACGGCTTTCTGTCGGGAGGGAGGAACGAGAAATTACATTGGAAGGAGGCAAATCAGAGGAAGTATCGATTTCGCACGACGGCTTGTCATGGGGCAAACCCTATGTTCGGCAAGTGGGTGGGGTATTCGGTATGATTCCAGACAATATCCTTCGAGGCGACTCCATCCCTCTACCCTTAACCAAAGGGTGGGAAGAAATGCCTGTAGGACAAGTGGAGAAAAAGCCTTGGGGAGAGATTAGCTCCTGTCTGCTGGTGCAGGATATTGTATCGGATAGAGAACAGACCGTGGCATGCCACCTGACTTTCGGCAATGGCATATATGTAACACTCAATGGGAAACAAATCACAGCCGAACTGATTCGGGAGACAGGCCTGGCTCATGAACTAACCGTTTGCTTGCCGTTGCAAAAAGGGAAAAATCGATTGGCTGTGAAGTTTATGAATAGATTCGGGGAAGAATTGATAAGAGGTGTCAGCTGGCCGAAGTCATATACACGCTACTTGCTGCCCATTGAAGGGTTTTCATTGGAGAAAGTCGGGAAAAAGGGGATTCCCATCGAACTCCGTCCTGCATCCGTTCGGTATCAGGGTGCATCTGCTTCGATTCCGAATATAGCCCTCCTT","6.50","-4.74","76066","VAQRHSEAFERWHRDKFSLFIHYGLYSELGGVWQGKPVKNGYSEQIYSFGIRDMKQYEPVAKRFRPDRWDADAIVALARKAGMKSIVFTSKHHDGFCMYGSAETPFNIVEATPSRRDVMKELSDACERSGMKFGVYFSLIDWHFPEANPISDHNADRITPAHHQYNMRQVREILTGYGPVSELWFDMGSLTPKQSEELYCLVHELQPDCMVSGRLGNDRADFAVMGDNELPTEPIAIPWQTAASMFPETWGYRSWQERGSIRDKAREKFEDLVRVVCRGGNYLLNIGPEGNGSILPYESEVLRTMGEFLDMYGEGIYGTERSPFPELLPFGEVSVRDSMLYLFVRPDMAGKEVFIPVNGEFLEEVSNLTNASPLNMDIRKTGVRIRMPASMPESFLVLALAFDRNDFVLAGRPQGYPLHMANSSRIYGHSCWDYYTGFKSITGMKWQAVSAPRAIIYTDMEAGKTLRLSVGREEREITLEGGKSEEVSISHDGLSWGKPYVRQVGGVFGMIPDNILRGDSIPLPLTKGWEEMPVGQVEKKPWGEISSCLLVQDIVSDREQTVACHLTFGNGIYVTLNGKQITAELIRETGLAHELTVCLPLQKGKNRLAVKFMNRFGEELIRGVSWPKSYTRYLLPIEGFSLEKVGKKGIPIELRPASVRYQGASASIPNIALL","1981156 1979063","TIGR ID: PG1884","alpha-L-fucosidase","Periplasm, Cytoplasm","Residues 6-397 have 27% similarity to S10235, rat alpha-L-fucosidase (EC 3.2.1.51) precursor.Residues 3-319 have 28% similarity to Y07497, D. discoideum fucosidase.Residues 16-388 have 28% simialrity to AL031320, H. sapiens alpha-L-fucosidase homolog.","
InterPro
IPR000933
Family
Glycoside hydrolase, family 29 (alpha-L-fucosidase)
PR00741\"[85-101]T\"[131-150]T\"[267-288]T\"[300-322]TGLHYDRLASE29
PTHR10030\"[12-257]TALPHA-L-FUCOSIDASE
PF01120\"[1-356]TAlpha_L_fucos
InterPro
IPR013781
Domain
Glycoside hydrolase, catalytic core
G3DSA:3.20.20.80\"[10-317]Tno description


","No hit to the COGs database.","***** IPB000933 (Glycosyl hydrolase family 29 (Alpha-L-fucosidase)) with a combined E-value of 2.9e-17. IPB000933B 77-107 IPB000933C 113-154 IPB000933F 278-294 IPB000933G 300-325","Residues 12-141 are 28% similar to a (PRECURSOR HYDROLASE GLYCOSIDASE SIGNAL) protein domain (PD186636) which is seen in Q9Z4I9_BBBBB.Residues 239-320 are 40% similar to a (ALPHA-L-FUCOSIDASE PRECURSOR) protein domain (PD187026) which is seen in FUCO_RAT.","","Thu Jun 14 12:21:12 MDT 2001","","Thu Jun 14 12:21:12 MDT 2001","Thu Jun 14 12:21:12 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:21:12 MDT 2001","Thu Jun 14 12:21:12 MDT 2001","","","Tue Mar 6 16:54:14 MST 2001","Tue Jun 26 08:20:11 MDT 2001","Tue Mar 6 16:54:14 MST 2001","Tue Jun 26 08:20:11 MDT 2001","Tue Jun 26 08:20:11 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 12-228 have 28% similarity to PG1525, possible alpha-1,3/4-fucosidase precursor.","Tue Jun 26 08:20:11 MDT 2001","Tue Mar 6 16:54:14 MST 2001","-49% similar to PDB:1HL8 CRYSTAL STRUCTURE OF THERMOTOGA MARITIMA ALPHA-FUCOSIDASE (E_value = 1.7E_32);-49% similar to PDB:1HL9 CRYSTAL STRUCTURE OF THERMOTOGA MARITIMA ALPHA-FUCOSIDASE IN COMPLEX WITH A MECHANISM BASED INHIBITOR (E_value = 1.7E_32);-49% similar to PDB:1ODU CRYSTAL STRUCTURE OF THERMOTOGA MARITIMA ALPHA-FUCOSIDASE IN COMPLEX WITH FUCOSE (E_value = 1.7E_32);","","","Residues 1 to 371 (E-value = 2.3e-12) place PG1639 in the Alpha_L_fucos family which is described as Alpha-L-fucosidase (PF01120)","Tue Jun 26 08:20:11 MDT 2001","34541490","","","","","","1","","","PG1884" "PG1640","1983245","1981161","2085","GTGGACGTATCTGCATATCCTTTTTTTCGTCGCGATATGAGTTGGCTCTCCTTTAACGAACGCGTGTTGATGGAGGCTGCCGACCGGACTTTGCCGGTTTACGACAGGATCAAGTTCCTGTCCATCTTCTCTTCCAATCTGGAGGAGTTCTATACCGTACGGGTGGCCTATCATCAGGCCGTCCTACAGAAACGGCGCGACAGGAGCGAGGCCGAAGAGGATTCCGATGCGGATGCTCATATCCTGCAAGCTATTCGGGAGACTGTAATCAGACAGGACGAACTGTATTATCGGATTTTTTACGATCAGATCCTGCCCACCTTGGAGGAACACGGTATCCGACTGCGTACGCATGCCCCCACTCATCCGGATCATAAAGCCTACCTGCGTCGTTTCTTCCACGAGGAGATTTTCCCTCTGCTCTATCCGATGCTGTTGCTGCCGAGCAAGGTGCGTACATTTATCCGTTCAGGTAGGGTGTATCTGGCTGTTCGGCTCAAAGAAAAAGAGACGGACGAGGCCTACAGCTATGCACTGCTCAATGTGCCTACCGACGGCCTTCCTCGCTTCGTAGAGCTGCCACGGCTCCAGACCGACACATTTTATTACTACTCTTTTCTGGAAGATATTATCAAAGAGCACCTGGATGTAGTCTTCCCCGGATACGAGGTGATGGACAGCTATTCGATCAAAGTGTCGCGCGATGCCGATTTGCTGTTGGATGCACAGCGTCCTGAAGATCTGCCCGGAGAGATCCGCAAGAAGGTGAAGACTCGCAAGCTCGGTGCTCCTACGCGATTCATGTATGACGGGCGCATGCCCGACGAGGTGCTGCGATACATCTGCAGTTCGTGCGACATCGATCCGGAGGAGGCGATTCGGAGTGGAAACTACGTCAATCTGCAAGATCTGGCTATGCTGCCCAATCCGTTTGCCCCCAGACTGGAGACACTCACGCCGGAGCCTCTCCTCTCGAAGCATTTGGAGCAGGCCCCCTCTCTGATGGAAGGCATTCGTAGGAAGGACTACCTGATTCATGTGCCTTACTATACGTATGACTATGTCGTGCGCCTGCTGATGGAAGCGGCCATCTCACCGGATGTGTCGGAAATACGCCTTACACAGTATCGCGTAGCTGAAAATTCGTCCATTATCAGTGCATTGGAAGCGGCTGCACAGAGTGGAAAGAAGGTATCTGTCTTCGTGGAGTTGAAAGCCCGATTCGATGAGGAAAACAACTTGCGTTTGTCAGAGCGTATGCGCCGTTCGGGGATTCGGATCGTTTACAGTATGCCCGGGCTGAAAGTCCATGCCAAAACGGCTCTCATCCTCTATCATACACCGGCCGGTGAACGTCCGCAAGGCATCGCTTTGCTCTCTACGGGGAATTTTAATGAGACCACTGCTCGCATTTACTCCGACACTACGCTGATGACTGCCAATACGGACATTGTGCATGATGTGTACCGCCTTTTCCGCATTTTGGACGGAGATCCCGAACCGGCACGTTTCAGTCGTCTGCTCGTGGCTCGCTACAACATGGGTGAAGCCATTACCAACCTGATCGAACGCGAGATAGAAAATGTGAAGCGTGGTAAGCGTGGCTATATGCTCCTGAAGATGAACGGCCTGCAGGACAAGAATGTCATCACACAGCTCTATCGGGCTTCCGAAGCCGGTGTGGAGATCGATCTGATCGTGCGAGGTATCTGCTGTTTGGTACCCGATATGCCACAGAGTCGCAATATACGTGTCACTCGATTGGTGGATATGTATTTGGAGCATAGCCGTATCTGGTGCTTCCACAACGGGGGGAAAGAAGAGGTATTCATCTCTTCGGCCGACTGGATGAAGCGCAATCTATACAACCGCATCGAGACTGCCTGCCCTGTGCTGGATCCTGCTTTACGAAGAGAGATTATCGACATATTGGAGATCCAGCTTCGCGACAATATCAAGGCTTGCCGGATCGATTCTTCTCTCAACAACATTTACAAACACAATAGCGATGAGAAACCGGTGCGAGCACAAGCTGCTATCTACCGCTATCTCAAAGGCAAAGAAGAGGCCACTCCTGCTGCAAAA","7.10","0.61","80648","VDVSAYPFFRRDMSWLSFNERVLMEAADRTLPVYDRIKFLSIFSSNLEEFYTVRVAYHQAVLQKRRDRSEAEEDSDADAHILQAIRETVIRQDELYYRIFYDQILPTLEEHGIRLRTHAPTHPDHKAYLRRFFHEEIFPLLYPMLLLPSKVRTFIRSGRVYLAVRLKEKETDEAYSYALLNVPTDGLPRFVELPRLQTDTFYYYSFLEDIIKEHLDVVFPGYEVMDSYSIKVSRDADLLLDAQRPEDLPGEIRKKVKTRKLGAPTRFMYDGRMPDEVLRYICSSCDIDPEEAIRSGNYVNLQDLAMLPNPFAPRLETLTPEPLLSKHLEQAPSLMEGIRRKDYLIHVPYYTYDYVVRLLMEAAISPDVSEIRLTQYRVAENSSIISALEAAAQSGKKVSVFVELKARFDEENNLRLSERMRRSGIRIVYSMPGLKVHAKTALILYHTPAGERPQGIALLSTGNFNETTARIYSDTTLMTANTDIVHDVYRLFRILDGDPEPARFSRLLVARYNMGEAITNLIEREIENVKRGKRGYMLLKMNGLQDKNVITQLYRASEAGVEIDLIVRGICCLVPDMPQSRNIRVTRLVDMYLEHSRIWCFHNGGKEEVFISSADWMKRNLYNRIETACPVLDPALRREIIDILEIQLRDNIKACRIDSSLNNIYKHNSDEKPVRAQAAIYRYLKGKEEATPAAK","1983244 1981160","TIGR ID: PG1885","polyphosphate kinase","Cytoplasm","Residues 8-695 have 35% similarity to AE004158, V. cholerae polyphosphate kinase.Residues 8-689 have 35% similarity to AF085682, S. typhimurium polyphosphate kinase.Residues 8-689 have 35% similarity to D14445, K. aerogenes polyphosphate kinase.This sequence is similar to BT2019.","
InterPro
IPR003414
Family
Polyphosphate kinase
PF02503\"[7-686]TPP_kinase
noIPR
unintegrated
unintegrated
G3DSA:3.30.870.10\"[359-506]Tno description


","BeTs to 4 clades of COG0855COG name: Polyphosphate kinaseFunctional Class: PThe phylogenetic pattern of COG0855 is -------ce-r-uj-------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 8-676 are 34% similar to a (KINASE POLYPHOSPHATE TRANSFERASE MEMBRANE) protein domain (PD007846) which is seen in O86073_VIBCH.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Mar 6 17:02:44 MST 2001","Tue Dec 9 17:16:38 2003","Thu May 17 11:01:35 MDT 2001","","Tue Mar 6 17:02:44 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 6 17:02:44 MST 2001","-59% similar to PDB:1XDO Crystal Structure of Escherichia coli Polyphosphate Kinase (E_value = 4.4E_121);-59% similar to PDB:1XDP Crystal Structure of the E.coli Polyphosphate Kinase in complex with AMPPNP (E_value = 4.4E_121);","","","Residues 7 to 686 (E-value = 7.1e-197) place PG1640 in the PP_kinase family which is described as Polyphosphate kinase (PF02503)","Thu May 17 11:01:35 MDT 2001","34541491","","","","","","1","","","PG1885" "PG1641","1984629","1983412","1218","ATGAAAGAATTTATCATATCGGAGGCACGAACCGAGCCTACCGTCCTTGTCGGACTGATTACCCCTCAGCAATCGGAAACTCAAGTGCGAGAGTATCTCGATGAGTTGGCTTTCTTGTGCGAAACAGCCGGAGCGCAGCCGATAGCCCGCTTCACCCAGAAACTGGATCAGCCCAATTCCGTAACCTTTGTAGGCAAAGGCAAATTGGATGAGATACGCGCCTATGTGCAGGAGAACGAGATCGGCATGGTGGTGTTCGACGACGAACTGTCGCCCAAGCAGCTGCGCAACATCGAAAAAGAACTTCAGACCAAGATCCTCGATCGTACGGGTCTTATCCTCGATATATTCGCCCGACGGGCACAGACGGCTCATGCCAAAACGCAGGTAGAACTGGCGCAGTACCAGTATATGCTGCCTCGACTGACGGGGCTATGGACCCACCTCGAAAGGCAGCGAGGCGGTGTCGGCATGAGAGGTCCGGGAGAAAAGCAGTTGGAGACAGACCGCCGTATCGTCTTGGACAAAATAGCTCGGCTCAAAGAAGAACTAAGGGACATAGACAAGCAGAAATCCGTGCAGCGCAAGAACCGTGGCAAGATGGTACGCGTTGCTTTGGTCGGCTATACGAATGTCGGGAAGAGTACGTTGATGAATGTCCTCTCCAAAAGTGAGGTCTTCGCCGAAAACAAGCTGTTTGCCACGTTGGATACGACGGTGCGCAAGGTGATCATAGACAATTTGCCTTTCTTGCTGAGCGATACGGTCGGGTTTATCCGCAAGCTGCCCACACAGTTGGTCGAATCTTTCAAAAGTACACTTGATGAGGTGCGAGAGGCGGATTTGTTGGTGCACGTGGTGGATATGTCGCATCCGGCATTCGAAGAGCAAATAGAGGTGGTGAACCAGACTCTGGCGGAGATAACGGCAGGAGAAGAAAAGCCGATGCTTCTTCTCTTCAACAAGATCGATGCGTTCTCTTTCACACCCAAAGACGAAGACGACCTTACTCCCCGAACAAAAGAGAACATAAGTGCCGAGGAGCTGCAACAGACCTGGATGGCCAAACTCGGGAATGACTGCCTGTTCGTCTCGGCGAAGAAAGGCACCGGGATGGATGCTCTGAAAGCTCTTTTGTACGAGAGAGCTAAGGCAATCCATATCACGCGCTTCCCCTACAATGACTTCCTGTTCCAGGACTATTCGGAGGAGATGGAA","5.40","-6.84","46309","MKEFIISEARTEPTVLVGLITPQQSETQVREYLDELAFLCETAGAQPIARFTQKLDQPNSVTFVGKGKLDEIRAYVQENEIGMVVFDDELSPKQLRNIEKELQTKILDRTGLILDIFARRAQTAHAKTQVELAQYQYMLPRLTGLWTHLERQRGGVGMRGPGEKQLETDRRIVLDKIARLKEELRDIDKQKSVQRKNRGKMVRVALVGYTNVGKSTLMNVLSKSEVFAENKLFATLDTTVRKVIIDNLPFLLSDTVGFIRKLPTQLVESFKSTLDEVREADLLVHVVDMSHPAFEEQIEVVNQTLAEITAGEEKPMLLLFNKIDAFSFTPKDEDDLTPRTKENISAEELQQTWMAKLGNDCLFVSAKKGTGMDALKALLYERAKAIHITRFPYNDFLFQDYSEEME","1984634 1983411","In E. coli hflX is part of the hflA locus (high frequency of lysogenization) which controls the lysis-lysogeny decision of bacteriophage lambda by controlling the stability of the phage CII protein.TIGR ID: PG1886","HFLX-related GTP-binding protein","Cytoplasm","Significant hits with gapped BLAST to GTP-binding HflX proteins;e.g. residues 15-384 are 42% similar to GTP-binding HflX protein(AE000762) of Aquifex aeolicus, residues 8-381 are 42% similar to probable HflX protein (Z98209) of Mycobacterium tuberculosis, residues 12-392 are 42% similar to GTP-binding HFlX protein (U14003) of E. coli. This sequence is similar to BT2258.","
InterPro
IPR002917
Domain
GTP-binding protein, HSR1-related
PF01926\"[202-324]TMMR_HSR1
InterPro
IPR005225
Domain
Small GTP-binding protein domain
TIGR00231\"[199-368]Tsmall_GTP
InterPro
IPR006073
Domain
GTP1/OBG
PR00326\"[204-224]T\"[270-288]TGTP1OBG
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[201-397]TG3DSA:3.40.50.300
PTHR10229\"[71-401]TPTHR10229


","BeTs to 9 clades of COG2262COG name: GTPases, the HflX familyFunctional Class: RThe phylogenetic pattern of COG2262 is -------ce-r-uj-------Number of proteins in this genome belonging to this COG is 1","***** IPB000765 (GTP1/OBG family) with a combined E-value of 1e-08. IPB000765B 196-247 IPB000765D 307-327","Residues 33-198 are 45% similar to a (PROTEIN GTP-BINDING HFLX GTP) protein domain (PD006242) which is seen in P94478_BACSU.Residues 251-324 are 54% similar to a (PROTEIN GTP-BINDING ERA HOMOLOG OXIDATION HFLX PUTATIVE) protein domain (PD002733) which is seen in O67743_AQUAE.Residues 204-344 are 31% similar to a (PROTEIN GTP-BINDING LIPOPROTEIN PRENYLATION RAS-RELATED) protein domain (PD000015) which is seen in P94612_COXBU.Residues 251-324 are 48% similar to a (GTP-BINDING PROTEIN YNBA F46B6.4) protein domain (PD009339) which is seen in P94478_BACSU.Residues 200-238 are 66% similar to a (PROTEIN GTP-BINDING INTERGENIC REGION HOMOLOG ERA IRON) protein domain (PD000414) which is seen in O67743_AQUAE.","","Thu Jun 14 12:21:29 MDT 2001","","Thu Jun 14 12:21:29 MDT 2001","Thu Jun 14 12:21:29 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:21:29 MDT 2001","Thu Jun 14 12:21:29 MDT 2001","","Tue Jun 26 08:15:22 MDT 2001","Wed Mar 22 10:56:27 MST 2000","Wed Dec 10 17:14:22 2003","Thu Feb 22 18:26:16 MST 2001","Tue Jun 26 08:15:22 MDT 2001","Tue Jun 26 08:15:22 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1641 is similar to PG0786, a thiophene and furan oxidation protein (GTPase), and to PG1874, a probable GTP binding protein.","Tue Jun 5 11:30:27 MDT 2001","Wed Apr 4 18:00:33 MDT 2001","-51% similar to PDB:1XZP Structure of the GTP-binding protein TrmE from Thermotoga maritima (E_value = 1.7E_15);-51% similar to PDB:1XZQ Structure of the GTP-binding protein TrmE from Thermotoga maritima complexed with 5-formyl-THF (E_value = 1.7E_15);","","","No significant hits to the Pfam 11.0 database","Tue Jun 26 08:15:22 MDT 2001","34541492","","","Noble JA, Innis MA, Koonin EV, Rudd KE, Banuett F, Herskowitz I.The Escherichia coli hflA locus encodes a putative GTP-binding protein and two membrane proteins, one of which contains a protease-like domain. Proc Natl Acad Sci U S A 1993 Nov15;90(22):10866-70. PubMed: 8248183. ","","Tue Apr 18 09:21:38 MDT 2000","1","","","PG1886" "PG1642","1984708","1985739","1032","ATGCTGATTGACACCGATTTTTTCTTATCCAACCGCTCCGACTCTCTCGTTTTGGACGTCCGCTCTCCGGAAGAATACCGCCGCGGACATATTCCCGGCGCAGAGAGTTTCCCCCTGTTTTCGGATGCGGAACGAGCCGAGGTAGGTACGCTCTATGTCAGACATAGTCGCCAGGCGGCCGTAGAGCGAGGATTGGAGTTCGTTGGGCCGCGTATGGCCGAGATGGTGCGAGAAGCTCGCTCCCTTGCTGCCGGCAGAGACATCATCCTCTACTGCTGGAGAGGAGGTATGCGAAGCGAGAGTGTCGCTTGGCTGCTATCCGTAGCAGGACTTCGCATCCGTCGTCTCCGTGGCGGATACAAAGCATACCGCCGGCATTTCCCCGATATTCTGAAGCTTTACCCGTGGCGTTTCATCGTCTTAGGCGGTTATACGGGATCAGGAAAAACGCCCATCCTGAACGAACTCACCCAAATGGGGGAACAGGTGATCGATCTGGAAGGATTGGCCCACCACAAAGGGTCTGCCTTCGGTGCCTTGGGGCAAGAGCAGCAGCCGACCACCGAACATTTCATGAATCTCTTGCACGATGCTCTCTCCGCTTGTGATCCGAATCGTCCGATATGGGTGGAAAGCGAGAGCAAGACTATCGGGCGCGTATTTCTTCCGGACGATTTCTACAAAGTCATGCGTCAAGCTCCTTTGATCGAGCTGTCTGTCCCCCGTCCCGTACGCATCGCCCATATTGCCAAAGAGTACGGCGTGTACGATGCAGAGGCACTGGCAAACTCTTTCGAGCATATCGCTCGCCGGATGGGAGGAGCCGCTACGACACAAGCCATAACTGCCCTCAAGGAAGGACGTCTGGAGGAGGCCGTATCCTTGGCTCTCGATTACTATGACAAGGCCTATGCACACTCGCTGGCTGAATTCAGGGAAAGCTCCTCTGCTCGACTGGCAGTAGAAACGGATACACCTCACGAAACAGCCATCAAACTACTGGAACTATCTCATATAAAAGGGTTACAATCA","7.00","0.00","38559","MLIDTDFFLSNRSDSLVLDVRSPEEYRRGHIPGAESFPLFSDAERAEVGTLYVRHSRQAAVERGLEFVGPRMAEMVREARSLAAGRDIILYCWRGGMRSESVAWLLSVAGLRIRRLRGGYKAYRRHFPDILKLYPWRFIVLGGYTGSGKTPILNELTQMGEQVIDLEGLAHHKGSAFGALGQEQQPTTEHFMNLLHDALSACDPNRPIWVESESKTIGRVFLPDDFYKVMRQAPLIELSVPRPVRIAHIAKEYGVYDAEALANSFEHIARRMGGAATTQAITALKEGRLEEAVSLALDYYDKAYAHSLAEFRESSSARLAVETDTPHETAIKLLELSHIKGLQS","1984707 1985738","TIGR ID: PG1887","conserved hypothetical protein","Cytoplasm","Residues 13-313 have 33% similarity to AE005231, E. coli putative capsule anchoring protein.Residues 13-313 have 30% similarity to AL139075, C. jejuni putative ATP /GTP binding protein.Residues 14-305 have 31% similarity to AE004592, P. aeruginosa conserved hypothetical protein.","
InterPro
IPR001307
Family
Thiosulfate sulfurtransferase
PS00380\"[26-37]TRHODANESE_1
InterPro
IPR001763
Domain
Rhodanese-like
PF00581\"[4-126]TRhodanese
SM00450\"[1-129]TRHOD
PS50206\"[11-132]TRHODANESE_3
noIPR
unintegrated
unintegrated
PD276518\"[138-304]TPD276518
G3DSA:3.40.250.10\"[11-125]TG3DSA:3.40.250.10
SSF52540\"[135-302]TSSF52540
SSF52821\"[13-151]TSSF52821


","BeTs to 4 clades of COG0607COG name: Rhodanese-related sulfurtransferasesFunctional Class:  PThe phylogenetic pattern of COG0607 is amT-YQ-CEBRHuj--o---xNumber of proteins in this genome belonging to this COG is 3","No significant hit to the Blocks database.","Residues 89-313 are 33% similar to a (HYPOTHETICAL 41.1 KD PROTEIN) protein domain (PD127221) which is seen in YBBB_ECOLI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Mar 6 17:11:01 MST 2001","Tue Mar 6 17:11:01 MST 2001","Tue Mar 6 17:11:01 MST 2001","","Tue Mar 6 17:11:01 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 6 17:11:01 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 4 to 126 (E-value = 2.6e-06) place PG1642 in the Rhodanese family which is described as Rhodanese-like domain (PF00581)","Tue Mar 6 17:11:01 MST 2001","34541493","","","","","","1","","","PG1887" "PG1643","1985739","1986350","612","ATGAAAGTAGTGGATACTCGGGGGAAACTCTGCCCCCTCCCTCTTATTTTGCTCAAGAAAGCCGTTGACGGCACTCCCGTCGGAGAAGAAATCTCCGTAATGACTGACAATGAAACGGCAAAATGCAACCTGCGCGATTATATCGGCGAACTGGGAGCCGTCGCCATCGAATCCGAAGAGGGCGACTATACAACGCTCACCTTTCGGGTATCGACCCATATCGAAGAAGCGGCCCCGACTTCCTGCCCGGCCGAGCATCCGCATACAGTGGCACAAGGCGACTACCTCATCGTGGCCAAAAGCAATCGGATGAGCACCGGAAATGACGAATTGGGCAGCATCCTGATGCGCGCTTTCGTCAATGCCATCGGAGAGCTCGATCGACTTCCTTCGCATATCATCCTTTACAATACGGGGGTGCTGCTGGCCGTCGAGGGCACGGACACGGCCGAAACACTGGCCGAACTGAACAAGAAGCACGGCATCCCCATCATCGTATGCGGCACCTGCGCCGACTACTATGAAGTGAAAGACAAACTACGCATCGGTACCATCTCCAATATGTACCGGATCATGCAGCTTCAAGTAGCCACACGCCACATTATCTATCCT","5.20","-6.79","22303","MKVVDTRGKLCPLPLILLKKAVDGTPVGEEISVMTDNETAKCNLRDYIGELGAVAIESEEGDYTTLTFRVSTHIEEAAPTSCPAEHPHTVAQGDYLIVAKSNRMSTGNDELGSILMRAFVNAIGELDRLPSHIILYNTGVLLAVEGTDTAETLAELNKKHGIPIIVCGTCADYYEVKDKLRIGTISNMYRIMQLQVATRHIIYP","1985738 1986349","TIGR ID: PG1888","hypothetical protein","Cytoplasm","No significant hits found using gapped BLAST search of GenBank.","
InterPro
IPR001455
Family
SirA-like
PS01148\"[4-28]TUPF0033
noIPR
unintegrated
unintegrated
G3DSA:3.30.110.40\"[2-73]TG3DSA:3.30.110.40
SSF64307\"[1-70]TSSF64307
SSF75169\"[98-203]TSSF75169


","No hit to the COGs database.","***** IPB001455 (Uncharacterized protein family UPF0033) with a combined E-value of 1.8e-09. IPB001455 1-33","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Mar 6 17:21:19 MST 2001","Tue Mar 6 17:21:19 MST 2001","Tue Mar 6 17:21:19 MST 2001","Tue Mar 6 17:21:19 MST 2001","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 6 17:21:19 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Apr 5 17:42:40 MDT 2001","34541494","","","","","","1","","","PG1888" "PG1644","1986494","1987150","657","ATGTTACGAATTGGAAAAACGATCTTCGGACTCATAGCACTGACCATTCTCTTGGGATCATGCTGGTCCAAGAAGAACGACTTGGGTCATGACATCCCGTCTCAATTGGTTTGTCGCTTCACGGAAGGAGTACTTACCGAACCGGCAGATAACAGTATAAACGTAAGTCCAACAGCATTCTTCTCCAAAGATACCGTAAGTATTCACCACATGGTCTCCAATGCTTTTGGCTCTTTTGCAGCCCTACCCGGTAGCCAGAAACCAAAGCTTAAGAAGGGAATATGGTATAAAATGGAGATTTATCTTTTCGACAAGGAGAACAACCGACTAAACCAACAATTCTTTCAGCCTGATCAGATCGAGATACATCAGTTTTTCTTCAACCTGATGAGCAACGAAACAGAAGTTCCAAAAGGGATCTCCTATTACTACTCAGATGTCATTAATGGCCAATTGCTTGAAACCCCCGTTGGATTTACCGGTTATATTCGGGTAAACAAAGAATTGGAGGCCCCTGAGCTACGCCTAATGCTTGTACACTTGAAAACAGGTAACAAATACGAAGCTGATGGGAAGCCGAACCCCTTCGACAAGCCAAGTCCACGTGTACTTGAATTTGGAGATTTTGCCGCCTTCATAGGCATTGAAATAAAAAAA","7.60","1.11","24786","MLRIGKTIFGLIALTILLGSCWSKKNDLGHDIPSQLVCRFTEGVLTEPADNSINVSPTAFFSKDTVSIHHMVSNAFGSFAALPGSQKPKLKKGIWYKMEIYLFDKENNRLNQQFFQPDQIEIHQFFFNLMSNETEVPKGISYYYSDVINGQLLETPVGFTGYIRVNKELEAPELRLMLVHLKTGNKYEADGKPNPFDKPSPRVLEFGDFAAFIGIEIKK","1986493 1987149","TIGR ID: PG1889","hypothetical protein","Cytoplasm, Periplasm","No significant hit found in gapped BLAST with E value less than e-04.","
noIPR
unintegrated
unintegrated
PS51257\"[1-21]TPROKAR_LIPOPROTEIN


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541495","","","","","","1","","","PG1889" "PG1644.1","1987366","1987704","339","TTGAAAATGGTTTATATACAGATCGTCAGGCAGTCTTCCAAAGAGCACATTCCGAGCAACAAAAGTCCGTTTTCTCGTATTTTTCACCTCGCTTTCCCACACACTTTCAGCTGCTTATTTAGAATGATTCTAAGCTCGTCTTCATTGTTGAAAACTTTTTTGGCTGTCTTTTACCCTAAAAACTCATTCTTTCCACACCCATCACAGGCCGACATTCAGGCTGTTATCACAGAGCGACATAAAAAGCCAAGAAGAAAAGGATCCCAAAACACACAAAATCAAGACGATCTTGCTTGCAATAATGAAAAATACATTTCCTTTGCAGTAAAATATCATCAA","","","13172","LKMVYIQIVRQSSKEHIPSNKSPFSRIFHLAFPHTFSCLFRMILSSSSLLKTFLAVFYPKNSFFPHPSQADIQAVITERHKKPRRKGSQNTQNQDDLACNNEKYISFAVKYHQ","","NO TIGR ID corresponds to this gene.","hypothetical protein","Periplasm","No hit found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG1645","1987999","1988505","507","TTGCATTTTGTGTTGACAAAAAAAGAAAACGACATGAGGAAGTTATTTTTAATAGCATGCTTAGAAATGTTTATGTTCGGCTGTTCTCCTATTCTCAAAAGTAACTCTAACGATAATAATATGAGTTTGGGACAAATACACGAACTGCAAGTGCATAATTTTTCGCAAATTCCAAAGGATTTGCTGGAAAATATGGATAAAATGGGCGTGGACAATTCGTCAATACTCAATGAATATGAGGGGAGATATTTTAATTTTATTTTCAATATAGACCCTCAGGTTTTTAATCTTGTCGGGAAAAAAGTCGGCTTTTGGGGAAGCAAAATAGATTATTTCAATGATACACGCTCCTCTGACCGTAATTTTAAAACCGTTGGAGGTAGTAGTTTATATATTTTCGATGCTAATCAAAAAGAGGAAAGTGGCGGATATGATGCTGCTATTACTTATTGGAACAAATCTTTACTTCCGACAGAAGAAGTCGTTAAAAGACTAAGCAAGAAGCAT","6.90","-0.14","19483","LHFVLTKKENDMRKLFLIACLEMFMFGCSPILKSNSNDNNMSLGQIHELQVHNFSQIPKDLLENMDKMGVDNSSILNEYEGRYFNFIFNIDPQVFNLVGKKVGFWGSKIDYFNDTRSSDRNFKTVGGSSLYIFDANQKEESGGYDAAITYWNKSLLPTEEVVKRLSKKH","1987998 1988504","TIGR ID: PG1891","hypothetical protein","Outer membrane, Cytoplasm","This sequence corresponds to gi:34397814 in Genbank.","
noIPR
unintegrated
unintegrated
signalp\"[1-27]?signal-peptide
tmhmm\"[15-33]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Mar 6 17:12:28 MST 2001","Tue Mar 8 15:54:47 2005","Tue Mar 6 17:12:28 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 6 17:12:28 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Mar 6 17:12:28 MST 2001","34541497","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Tue Mar 8 15:54:47 2005","","1","","","PG1891" "PG1646","1988556","1989611","1056","ATGAATGATATGGAGACCGTGGTAGCAAAGATTATTTTTGGAGTAGGTAAAGATGGTTTCGTCTATGTGCGGGTCAATTCCGGACAGTGGAAGTTGCATTATATCTATCGCGATTATCAAGGCAGCGTGACGGATATTACCGATGCCTCCGGCACGGTGGTACACCGCATGCGATACAGCCCATGGGGAAAATTACTGCATACGGATGGTACACCTTATACCCGAAGCGAAGAGTTATCCACCGACTATGACCGGCTTCTCTTCCTTGGACGGGGTTATACAGGGCACGAGTATCTTCCCTGGTTTGGATTGGTCAATATGAATGCCCGACCGTACGACCCTGCTATCGGACGCTTCCTCTCGCCGGATCCCTATGTACAGATGCCGGACTATACGCAAAGTTTCAATAGGTATGCATATTGTTTGAATAATCCGCTAACTTACACCGACCCAGACGGCGAGTTCTGGCACTTAATTATAGGTGCGGTGATTGTAGGAGCAATAAATTGGGCAACTCACGGATTCCAATTCAATGCAAAAGGATTGGGTTATTTTGGTGTTGGAGCATTGGCGGGGACATTAGGAGCGGGCATCGGAGCAGGCATTAGTTCTGCATTGCCTATTGTGGGGCAAGCATCGGGCGGTTTTGTGGCAGGATTTTGGGGGACAAGCGCGGCAACAACGGCGACATCAAGCTTTGTTTCAGGCGCACTCGTTGGTGGTGGTGCAGGTTTTAGCAGCGGATTTACCACAGGTTTTGGAAACGCTTTGATTGATGGTAAAAACTTTGGTCAAGCTCTGGGACAGGGTGGCATTTATGGCGCAATAGGTTTAGGGTCTGGCGCACTAATTGGTGGACTTGTAGGTGGTATTAGTGCCGTAAGAGATGGGAGGGAGTTTTGGAATGGAGCAAGAATGATAGATGAACAATCTCTTGCTAACCAAAATTTGCCGTTAGTTCAACAAAGAGGAGATATGAATTGCTGTCCCGCGACAGGAGAATCAACTACAGGTGTTTCACAAGATACATACCGAAAAAATAATTGGAGGAGATCC","6.80","-0.70","37559","MNDMETVVAKIIFGVGKDGFVYVRVNSGQWKLHYIYRDYQGSVTDITDASGTVVHRMRYSPWGKLLHTDGTPYTRSEELSTDYDRLLFLGRGYTGHEYLPWFGLVNMNARPYDPAIGRFLSPDPYVQMPDYTQSFNRYAYCLNNPLTYTDPDGEFWHLIIGAVIVGAINWATHGFQFNAKGLGYFGVGALAGTLGAGIGAGISSALPIVGQASGGFVAGFWGTSAATTATSSFVSGALVGGGAGFSSGFTTGFGNALIDGKNFGQALGQGGIYGAIGLGSGALIGGLVGGISAVRDGREFWNGARMIDEQSLANQNLPLVQQRGDMNCCPATGESTTGVSQDTYRKNNWRRS","1988555 1989610","NO TIGR ID corresponds to this gene.","hypothetical protein","Extracellular, Inner membrane","No significant hits found using gapped BLAST search of GenBank.","
noIPR
unintegrated
unintegrated
tmhmm\"[155-175]?\"[180-200]?\"[206-224]?\"[233-253]?\"[272-294]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 31-153 are 31% similar to a (PROTEIN CORE OF PRECURSOR) protein domain (PD004656) which is seen in WAPA_BACSU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Mar 6 17:17:01 MST 2001","Tue Mar 6 17:17:01 MST 2001","Tue Mar 6 17:17:01 MST 2001","","Tue Mar 6 17:17:01 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 6 17:17:01 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Mar 6 17:17:01 MST 2001","","","","","","","1","","","" "PG1646.1","1989568","1989951","384","GTGTTTCACAAGATACATACCGAAAAAATAATTGGAGGAGATCCTAATAAAGATCATGTAACAATGGCGCAATTTAATGACGCTATCCAATTAGAAACTGGGAGGAAGGTTTCTCCATACCTTAAGACTTTACCTACAGACAAAACAGGAGCAGAACAAGTGGCAGGTATGATGAATAGAGGTAATAATTTTTATTTAGGTTCTACTACAGCGGGACAACCGATAGGACACGTAACGGCTTTGAACAGTGTATCAGTACGGACTTTCCAAAAAATATCAGGGGACATATACTATAAAGTTGTTTATCAGGTGATGGATCCTGCGCGAGGTGCATATAGAATCATAGGAGCAAATTCTATGAATATCGTAGTGCGAATCTATCCT","","","14100","VFHKIHTEKIIGGDPNKDHVTMAQFNDAIQLETGRKVSPYLKTLPTDKTGAEQVAGMMNRGNNFYLGSTTAGQPIGHVTALNSVSVRTFQKISGDIYYKVVYQVMDPARGAYRIIGANSMNIVVRIYP","","TIGR ID: PG1892","hypothetical protein","Periplasm, Extracellular","No significant hit found in gapped BLAST with E value less than e-04.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541498","","","","","","1","","","PG1892" "PG1647","1989959","1990546","588","GTGCACAATTTCATGGCAAAGAAACTATCTTTTTGGGGGGCAACATTGTTATTTTTTAGCGTGTCTGCACTTTCACAAAACATATTGACGGACATAAGCAAATACGACTTGAATAAAATAGAAAAACGGACGATTAAAAAAAGTCGTAAGCTCTTAAAAACAGAAAAAGAGCGAAAGCTTTTTGCCTTCACGTATTTTGCAATAGGATTATCGGATTTTTCTTCTAAAAAAAACGGCGATATCGACAATTTTCTCAAGAATTTCAAATTATCAAGCAAAGGGAACAGTATTGCCGATGATTTTTTCGAAAACTTTAAACTCTATGATTACAGATGCTATGTATACGACGACTCGTTGAATATAATTGCGATGGCAATGAAAACAAATGTATTCCTTTTTGGCAGCACAACGCCAGACAGTAGATATATTGAGTATATAACAAGAATAAATCCTGAATACACATTTGAATACATATTTTACCCGGGATCATGCTGCATGTATTTTTGTTACAAAAATGGTGAAATTATAATTGTTCGTTTGTCTGATGATGGTGAAAATATTATTTCTTATCCTTTATCAGATTCAAAG","8.80","4.05","22861","VHNFMAKKLSFWGATLLFFSVSALSQNILTDISKYDLNKIEKRTIKKSRKLLKTEKERKLFAFTYFAIGLSDFSSKKNGDIDNFLKNFKLSSKGNSIADDFFENFKLYDYRCYVYDDSLNIIAMAMKTNVFLFGSTTPDSRYIEYITRINPEYTFEYIFYPGSCCMYFCYKNGEIIIVRLSDDGENIISYPLSDSK","1989958 1990545","NO TIGR ID corresponds to this gene.","hypothetical protein","Outer membrane, Inner membrane, Cytoplasm","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-25]?signal-peptide
tmhmm\"[9-29]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG1648","1991103","1991873","771","TTGATTCAAAGAGAGGGGAATACTATAAAGCATAATCATGTCCGACTTCTGTGCATTGCTGTTGGAAGCGGCAGAGAATGGTATTGCCTTCTAAATAATTATAAAAAAATGAAGTTACATATTTATTCGTTCATTATCTCATGCCTATTGCTTTTGAGTTGCAATTCGAAAGCGGAAAAAGATAATTTTAATAAGCAAGTACGACAATTAAACGACAGTGCTGTTGCAATCGGCTCATTGGGAGACACTGCAAAAATCATGGTTGCAATCGAATTATTGAATAAGGTCATTGCCATGAAGCCTGATTACTATTCGGCTTACTGGAATAAGTTGGCATTTCAATATCGTTTAGGATTAATGGATGATGCTTTTGCCACACTAAAATCAATGGAACGAATTAATCCTGAAAATCCTGACTTAAAAACAATGCTTGGTGCCTTTCTCGAACAAAATAAAAAAGATTCAACACGAGCAATGATAAAATACAAGGAGGCAGATTTATTGTATAAAAATATTCTTGACACTATTAGCCCCAATTGCTTATCATATCAGTCTACAATGATTAATTATATATTGAATCTCAAATTATTGGGCGAAAACTTTGACGCAGACAGTATTCTATACTCACCCACTCAAAACGACTATTATGGCAAGGAAGAGATATATGAAGCATTTAAGCAATTCGCAGAAAACAATCTTATGAAAAAGACACGAGAAGAATTGGTTAAAATGGTCTCGCTATCGAGCGGAAGGGATACACTCTTAGTCAAC","8.60","4.49","29538","LIQREGNTIKHNHVRLLCIAVGSGREWYCLLNNYKKMKLHIYSFIISCLLLLSCNSKAEKDNFNKQVRQLNDSAVAIGSLGDTAKIMVAIELLNKVIAMKPDYYSAYWNKLAFQYRLGLMDDAFATLKSMERINPENPDLKTMLGAFLEQNKKDSTRAMIKYKEADLLYKNILDTISPNCLSYQSTMINYILNLKLLGENFDADSILYSPTQNDYYGKEEIYEAFKQFAENNLMKKTREELVKMVSLSSGRDTLLVN","1991102 1991872","TIGR ID: PG1893","conserved hypothetical protein, with TPR repeat","Cytoplasm, Periplasm","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR011990
Domain
Tetratricopeptide-like helical
G3DSA:1.25.40.10\"[89-164]Tno description
InterPro
IPR013026
Domain
Tetratricopeptide region
PS50293\"[89-172]TTPR_REGION


","BeTs to 6 clades of COG0457COG name: TPR-repeat-containing proteinsFunctional Class: RThe phylogenetic pattern of COG0457 is AMTKYQVCEB-HUJ--OLINXNumber of proteins in this genome belonging to this COG is 21","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Fri Sep 10 15:22:25 2004","","Fri Sep 10 15:22:25 2004","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 6 17:23:55 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Mar 6 17:23:55 MST 2001","34541499","","","","","","1","","","PG1893" "PG1649","1992420","1992995","576","ATGAAACGACTATTTTTCACCCTGCTTTTTGCTGTTTCTACCCTTTCCTCTCTGTATGGAAAGTCCGGTATTTCCGTTGCGCGCTTCCATTCACAGATAGGCACGAAGCAAACAACTGTTATGCAAGCAATTCCTGATACGATGATAACGGTAGACTATACAAAAGTCAAGTATTGCCTGCGAGTAAACTCCCAAACGAAACCTCCGGTTTGCGTCATAACTCAGACAAGCAAAGGGATTAACATTAAGGTAAGGACTGTTGATGCAGTCGATGATGAAAACCTAAACGGACGAATAATAGAGAATTTTTACCCCAATGATACTCTTGGCCCCGAATCGGAAGAGAAACTAAAAAGGTTGGGGGTTTTACTCTCCAAAGCCTCCGAAGATTTCGATCTTCGCCAAACCAATGAAATATCCATCGACTTAACTGTTTTCAAAGATTTGGCTGTTTCAATCACCGAAAAGCATTGTAATTTATACGGTGAGACAATCTCATACGGTGAAAAAATGACACTGAAAAAGGGAGACTTAATGACCAAGCCATTTTTCAAAGGCCTCTATAAGGTAAAAGAA","9.50","5.34","21619","MKRLFFTLLFAVSTLSSLYGKSGISVARFHSQIGTKQTTVMQAIPDTMITVDYTKVKYCLRVNSQTKPPVCVITQTSKGINIKVRTVDAVDDENLNGRIIENFYPNDTLGPESEEKLKRLGVLLSKASEDFDLRQTNEISIDLTVFKDLAVSITEKHCNLYGETISYGEKMTLKKGDLMTKPFFKGLYKVKE","1992419 1992994","TIGR ID: PG1894","hypothetical protein","Periplasm, Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
noIPR
unintegrated
unintegrated
signalp\"[1-20]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541500","","","","","","1","","","PG1894" "PG1650","1993003","1993479","477","ATGGCAAAGCGAATAATCACGAGGATAGGAGACGTTTTTGAAGTCCAATTAGATAATTGCAAGAAGTACTTTCAGTACATCGCAAATGACATGACACAGCTCAACAGTAGCGTAATACGTACTTTTGTGGAAGAATACCCCTTGGACTGTTCTCCGATCTTAGAAAATATTACCGCGGGTAAGGTTGATTTTTATGCACATACAGTCCTCCGATGGGGTATTCAGTCGGATTTGTGGTATAAAGTTGGTCGGATCAGTTTCGAAGAAGACGTGAACGTCCTTTTTAGAACCTACGATGAAGATGGTTATGTCCCTGTATCCAAACGTTGGTTGGTGTGGAAAATTAACCAGCCAATGAAGTTTGTTGGTGAACTCAGAGGAGAAAATCGGAATGCAGAAATAGGCCTTGTAATAAACCCTGATGAAATCTTTGAGAGGATAAAGAGTGGAGCATACAAAACTCGCTTTCCATGTTTT","6.00","-0.90","18676","MAKRIITRIGDVFEVQLDNCKKYFQYIANDMTQLNSSVIRTFVEEYPLDCSPILENITAGKVDFYAHTVLRWGIQSDLWYKVGRISFEEDVNVLFRTYDEDGYVPVSKRWLVWKINQPMKFVGELRGENRNAEIGLVINPDEIFERIKSGAYKTRFPCF","1993002 1993478","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No hit found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG1651","1993605","1994300","696","ATGAAGAAGATGTTTTTATTTCTATTGCTAAGTGCTATGTTTGTTCCTGTTTCAGACAGTCAAACTTTAATTCAACAGATTGAAAATGCATACAACACTCTTGATTCTGTTTCCTATATTGAAGATATAATATTATCATATAGAGGTGATTGGGTGATAAGGTATAAAGGATATGAAGAAAGAGCAGATTTATTAACTGCACTTAATTATTTTGATTCTATTCCAAGACAAAAACAAATCATTGACAGCCTTTGGGAAAATCTAACGCTTCGTTCAAAAACTACGATAGAAGAACAAATCAATGAATTTAGCGATATAGTAAGAGCAACAACACCTGTCTATATTTTGAATTTAATACCGCAAGACAAACAAACATTACAAGTAGATACAGGGAAATTACCCTTTAATCTTTTCTATTTAGGCAAACACTCAAAAAATAATTTTTATGTATTTGTCCATAACGGAGAATATGCTTATGGCCAAGATACCTATCCTACTGTTTCAAGGCCAATAGGTAAGAATATTCGCAAAGTGCTTCGTAAAATTATGCGGAAACAGCCCAAATATTTATTGTTCTGTCCAGAATTGGAAGAGATGAATACAATCCTTTATGTACTAAATGACAAGATATATGTTTACAGAGTTGCACAAATGAAAGAATACGAGTTGAGCGATTATTTTAAACACTTCCCTCGT","9.00","2.68","27553","MKKMFLFLLLSAMFVPVSDSQTLIQQIENAYNTLDSVSYIEDIILSYRGDWVIRYKGYEERADLLTALNYFDSIPRQKQIIDSLWENLTLRSKTTIEEQINEFSDIVRATTPVYILNLIPQDKQTLQVDTGKLPFNLFYLGKHSKNNFYVFVHNGEYAYGQDTYPTVSRPIGKNIRKVLRKIMRKQPKYLLFCPELEEMNTILYVLNDKIYVYRVAQMKEYELSDYFKHFPR","1993604 1994299","TIGR ID: PG1895","hypothetical protein","Cytoplasm, Periplasm","No significant hit found in gapped BLAST with E value less than e-04.","
noIPR
unintegrated
unintegrated
signalp\"[1-20]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541501","","","","","","1","","","PG1895" "PG1652","1994729","1996015","1287","ATGAGCTATCTATTCACATCCGAATCGGTGTCGGAGGGTCATCCTGACAAAGTATCCGACCAAATATCCGATGCCATCCTCGACCAATTTCTGGCTACCGACCCCGACTCCAAAGTGGCCTGCGAGACACTCGTAACCACCGGACAGGTAGTTCTGGCCGGCGAAGTCAAAAGTCGCTCTTATGTAGATGTACAGGAGACAGCGCGTCGTGTCATAGAAAGAATCGGCTACACTAAAAGCGAATATGGCTTCGATACTCGCAGCTGTGGGATCTTCTCCAGCATTCACGAGCAGAGTGCGGACATCAACCGCGGAGTCGACCGATCGGATCGATCCGAGCAGGGAGCCGGAGACCAAGGTATGATGTTCGGCTACGCCACGAACGAGACGGAGAACTACATGCCCCTGACAGTGGATCTGGCACACCACCTCCTCTACGAATTGGCCGCTATCCGCAAGGAGCCTTCTTCTCCGATGCCTTATTTGCGCCCTGATGCCAAGAGCCAAGTGACGATCGAACATGACGATGAAGGCAGACCCGTCCGGATAGACACGATCGTGATTTCCACCCAGCATGACGAATTTGTCCAAGCATCGGACGGTATTTCAGAAGCAGAAGCCGACCGGATGATGCAGGAGCGCATCCATCATGACATAGCTACCATACTGATCCCCCGAGTGAAAATGCTGTACAAACCGGAGATCGCAGCCCTATTCGACGAAAAGGTACGCCTATTCGTCAATCCTACGGGTAAGTTTGTGATAGGAGGGCCACATGGAGACACGGGCCTGACGGGACGAAAGATCATCGTGGATACTTATGGAGGCAGGGCTTCTCATGGCGGAGGAGCATTTTCCGGCAAGGACCCGTCCAAGGTAGATCGCTCCGCGGCTTATGCCGCCCGACACATAGCCAAAAACATGGTGGCAGCGGGCGTGGCCGACGAAATGCTTGTACAGGTAGCCTATGCCATCGGTGTAGCAGAGCCGGTAAGCATATACGTCAATACGAAAGGCCGGAGTCATGTGGCTCTATCGGATGGCCAAATAGCGGAGAAGATCAAGAAGATTTTCGATATGCGTCCTTACGCCATCGAGCAACGACTGAAACTCCGCAATCCGATATACGAAGAGACCGCAGCATACGGCCACTTCGGGCGCGAACCCTACGAAGCATACAAAACCTTTGTCGATGAGCACGGAACGGAACAGATGCGAATCGTGGAGCTATTCACATGGGAAAAGTTGGATTACGTAGATAAGATCAGGGCCGAGTTCGGTCTGTCG","5.30","-13.68","47687","MSYLFTSESVSEGHPDKVSDQISDAILDQFLATDPDSKVACETLVTTGQVVLAGEVKSRSYVDVQETARRVIERIGYTKSEYGFDTRSCGIFSSIHEQSADINRGVDRSDRSEQGAGDQGMMFGYATNETENYMPLTVDLAHHLLYELAAIRKEPSSPMPYLRPDAKSQVTIEHDDEGRPVRIDTIVISTQHDEFVQASDGISEAEADRMMQERIHHDIATILIPRVKMLYKPEIAALFDEKVRLFVNPTGKFVIGGPHGDTGLTGRKIIVDTYGGRASHGGGAFSGKDPSKVDRSAAYAARHIAKNMVAAGVADEMLVQVAYAIGVAEPVSIYVNTKGRSHVALSDGQIAEKIKKIFDMRPYAIEQRLKLRNPIYEETAAYGHFGREPYEAYKTFVDEHGTEQMRIVELFTWEKLDYVDKIRAEFGLS","1994728 1996014","TIGR ID: PG1896","S-adenosylmethionine synthetase","Cytoplasm","Residues 2-425 have 52% similarity to AE003891, X. fastisiosa methionine adenosyltransferase.Residues 1-428 have 52% similarity to AE001807, T. maritima S-adenosylmethionine synthetase.Residues 4-423 have 52% similarity to U36379, S. aureus S-adenosylmethionine synthetase.This sequence is similar to BT3219.","
InterPro
IPR002133
Family
S-adenosylmethionine synthetase
PIRSF000497\"[1-427]TMAT
PTHR11964\"[1-391]T\"[411-425]TS-AdoMet_synt
PF00438\"[1-100]TS-AdoMet_synt_N
PF02772\"[112-253]TS-AdoMet_synt_M
PF02773\"[255-394]TS-AdoMet_synt_C
TIGR01034\"[4-426]TmetK
PS00376\"[115-125]TADOMET_SYNTHETASE_1
PS00377\"[281-289]TADOMET_SYNTHETASE_2
noIPR
unintegrated
unintegrated
G3DSA:3.30.300.10\"[10-155]T\"[266-429]TG3DSA:3.30.300.10
SSF55973\"[1-102]T\"[108-254]T\"[255-429]TSSF55973


","BeTs to 11 clades of COG0192COG name: S-adenosylmethionine synthetaseFunctional Class: HThe phylogenetic pattern of COG0192 is ----Yqvcebrhujgpol---Number of proteins in this genome belonging to this COG is 1","***** IPB002133 (S-adenosylmethionine synthetase) with a combined E-value of 2.6e-159. IPB002133A 7-60 IPB002133B 75-107 IPB002133C 112-134 IPB002133D 144-197 IPB002133E 254-293 IPB002133F 294-332 IPB002133G 338-374 IPB002133H 376-387","Residues 4-387 are 55% similar to a (SYNTHETASE S-ADENOSYLMETHIONINE METHIONINE) protein domain (PD001322) which is seen in METK_STAAU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu May 17 11:26:15 MDT 2001","Mon Dec 22 10:06:26 2003","Thu May 17 11:26:15 MDT 2001","Tue Mar 6 17:32:38 MST 2001","Tue Mar 6 17:32:38 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 6 17:32:38 MST 2001","-70% similar to PDB:1FUG S-ADENOSYLMETHIONINE SYNTHETASE (E_value = 6.4E_117);-70% similar to PDB:1MXA S-ADENOSYLMETHIONINE SYNTHETASE WITH PPI (E_value = 6.4E_117);-70% similar to PDB:1MXB S-ADENOSYLMETHIONINE SYNTHETASE WITH ADP (E_value = 6.4E_117);-70% similar to PDB:1MXC S-ADENOSYLMETHIONINE SYNTHETASE WITH 8-BR-ADP (E_value = 6.4E_117);-70% similar to PDB:1P7L S-Adenosylmethionine synthetase complexed with AMPPNP and Met. (E_value = 6.4E_117);","","","Residues 1 to 101 (E-value = 3.1e-48) place PG1652 in the S-AdoMet_synt_N family which is described as S-adenosylmethionine synthetase, N-terminal domain (PF00438)Residues 112 to 253 (E-value = 2.3e-45) place PG1652 in the S-AdoMet_synt_M family which is described as S-adenosylmethionine synthetase, central domain (PF02772)Residues 255 to 394 (E-value = 2.1e-71) place PG1652 in the S-AdoMet_synt_C family which is described as S-adenosylmethionine synthetase, C-terminal domain (PF02773)","Mon Dec 22 10:06:26 2003","34541502","","","","","","1","","","PG1896" "PG1653","1996823","1996149","675","ATGATTTTCTTTCCCTCGCTTACTCCGGAGACAGCTCCGCTTTTTGTTATTCTGGCTAAGGGGGAATTTCCCCGTAAAATCCTCCCCCTTGCTATCCTCCGGCGAGCATCGGAGCATCCTGAAGGTACCATCGTCTGTTGCGATGGAGCCATACAGAATTTGCTGGACTATGGTGCAGAGCCGGATGCAGTAGTGGGCGACTTGGATTCTTTTACAGCCTCGCGACATATTTTGCCTGCAGAAAAACTACATCGCATAGACGAGCAGGATACCAATGATCTGACGAAGACAGTTACATTCTCTGCCGAGACCTATTCCCCTCGCGAGGTCTGTCTGCTGGGGACATCGGGGCGTCGTGAAGATCATTTTGTCGGCAATCTGGCACATCTGCCCGGATATACCCGCTTTTTCGAAAAGATCGTGATGCCTACGGATTACGGATGTTTTTTGGCTTTTAACGGGGAGGCTCGCATAGAAGTGGAGCGAGGGAGACAAATTTCTATATTCAGTTTCAGCGGATCAGCCGTCACGGCCGAAGGGCTGAAATGGCCGCTTCGCAATACCACTCTGCCGGAGTTGTGGTGCGGAACGCTCAACGAGGCAGTGAGCGATACGATCTATCTATCCTCTGCTGCCCCGTTGGTCGTCTTTGTAGCTGATGAAGTGAAAAACCGG","4.90","-8.02","24865","MIFFPSLTPETAPLFVILAKGEFPRKILPLAILRRASEHPEGTIVCCDGAIQNLLDYGAEPDAVVGDLDSFTASRHILPAEKLHRIDEQDTNDLTKTVTFSAETYSPREVCLLGTSGRREDHFVGNLAHLPGYTRFFEKIVMPTDYGCFLAFNGEARIEVERGRQISIFSFSGSAVTAEGLKWPLRNTTLPELWCGTLNEAVSDTIYLSSAAPLVVFVADEVKNR","1996864 1996148","TIGR ID: PG1897","conserved hypothetical protein","Cytoplasm","Residues 16-218 have 37% similarity to AE000633, H. pylori conserved hypothetical protein.Residues 48-218 have 29% similarity to Y13937, B. subtilis hypothetical protein.","
InterPro
IPR006282
Family
Thiamine pyrophosphokinase
TIGR01378\"[15-218]Tthi_PPkinase
InterPro
IPR007371
Domain
Thiamin pyrophosphokinase, catalytic region
PF04263\"[44-130]TTPK_catalytic
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.10240\"[7-146]TG3DSA:3.40.50.10240
SSF63999\"[1-147]TSSF63999


","BeTs to 4 clades of COG1564COG name: Predicted nucleotide-binding proteinFunctional Class: RThe phylogenetic pattern of COG1564 is ------v--b--uj---l---Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 16-218 are 37% similar to a (PROTEIN CONSERVED PUTATIVE) protein domain (PD108811) which is seen in Q9ZJT7_BBBBB.","","Thu Jun 14 12:22:12 MDT 2001","","Thu Jun 14 12:22:12 MDT 2001","Thu Jun 14 12:22:12 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:22:12 MDT 2001","Thu Jun 14 12:22:12 MDT 2001","","","Tue Mar 6 17:36:23 MST 2001","Tue Jun 26 08:12:01 MDT 2001","Thu Jun 14 12:22:12 MDT 2001","","Tue Jun 26 08:12:01 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 6 17:36:23 MST 2001","-53% similar to PDB:2OMK Structure of the Bacteroides Thetaiotaomicron Thiamin Pyrophosphokinase (E_value = 1.8E_28);","","","Residues 21 to 152 (E-value = 3.9e-08) place PG1653 in the TPK_catalytic family which is described as Thiamin pyrophosphokinase, catalytic domain (PF04263)","Tue Jun 26 08:12:01 MDT 2001","34541503","","","","","","1","","","PG1897" "PG1654","1997428","1996823","606","ATGATGACAGCGGTGATCCAATTCATTGTGGCTCATCCCATCGAGCTGGCAGCAGCACTCGTCAATTTTATTTGGGTCTATCTCGAATATAAGGCGAGTGTCTGGCTGTGGCCTGTGGGGATCGTCCTGCCGCTCTTCTACATTTATCTCTCGATCGAGGCGCAGTTCTACGGCAATGTGCTCATCAATGTCTACTATCTGATCACCAGTATTATCGGCTGGGTGATGTGGCTTCGCCACCGCGAAGGGACGGAAGAGGGTGCCATCGTATCCATCTCCCCGCGTGTCCTGTGGATCAGCCTTGCTGCGGCTACGGTGGCTTTTCTCCCGATGTTCTATGTGTTGTCCCACTATACGGATAGTCTTGTGCCGTGGGCCGATACGCTTGCCACTGTAATCAGCTTTGTCGGGATGATTTGGTTGGCGCGTCGCATCCGCCAGCACTGGGTGTGCTGGTTCGTAGCCAATATCATCAGCTTATCCCTTTTCTATAAATCCGGCGACCATATCACCACTGTCGTCTTTGCCGTCAATACCGTTATGTCCGTTCTGGGATATTTCCGGTGGCGCAAGATGCAACGACAGGCCACAATCAGCATCGACCTA","9.20","3.14","23304","MMTAVIQFIVAHPIELAAALVNFIWVYLEYKASVWLWPVGIVLPLFYIYLSIEAQFYGNVLINVYYLITSIIGWVMWLRHREGTEEGAIVSISPRVLWISLAAATVAFLPMFYVLSHYTDSLVPWADTLATVISFVGMIWLARRIRQHWVCWFVANIISLSLFYKSGDHITTVVFAVNTVMSVLGYFRWRKMQRQATISIDL","1997427 1996822","TIGR ID: PG1898","possible transporter protein","Inner membrane, Cytoplasm","Residues 13-191 have 26% similarity to AE004622, P. aeruginosa probable transporter.","
InterPro
IPR006419
Family
Nicotinamide mononucleotide transporter PnuC
PF04973\"[1-158]TNMN_transporter
TIGR01528\"[11-195]TNMN_trans_PnuC


","BeTs to 3 clades of COG0477COG name: PermeasesFunctional Class: G,E,RThe phylogenetic pattern of COG0477 is AMTKYQVCEBRHUJGPo-INXNumber of proteins in this genome belonging to this COG is 5","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Fri Jun 15 11:28:00 MDT 2001","Tue Mar 6 17:47:57 MST 2001","Thu May 17 11:27:21 MDT 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 6 17:47:57 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 1 to 158 (E-value = 1.1e-07) place PG1654 in the NMN_transporter family which is described as Nicotinamide mononucleotide transporter (PF04973)","Thu May 17 11:27:21 MDT 2001","34541504","","","","","","1","","","PG1898" "PG1655","1999817","1997436","2382","ATGGCTGAGAACAAACCCTCATCACCTGAACCGGATAATACCGGCGTAGGAAACTCTCCGTCTGACTATCTTCACGGCGAAGCAATCATTCCCCCTCTCTCTTCTTTGTCCAACTTCAATGATAAGAGATTTATGAAAAAACTTCACATGATTGCCGCCTTAGCCGTCCTGCCTTTCTGCCTGACGGCACAAGCACCCGTCTCCAACAGCGAGATAGATAGTCTTAGCAATGTGCAGCTCCAGACCGTACAGGTCGTAGCTACTCGCGCCACGGCGAAAACCCCTGTCGCTTACACCAACGTTCGCAAGGCCGAACTTTCCAAGTCCAATTATGGTCGTGACATCCCCTATCTGCTGATGCTGACTCCCTCCGTGGTAGCCACCAGCGATGCCGGTACGGGTATCGGATATTCCGGCTTTCGCGTGCGTGGCACCGATGCCAATCGCATCAACATAACTACCAATGGAGTACCCCTCAACGACTCCGAATCTCAGTCCGTCTTTTGGGTGAATATGCCCGACTTCGCCTCTTCCATCGAAGACCTTCAGGTGCAGCGAGGTGTGGGTACTTCCACCAATGGTGCCGGAGCTTTTGGGGCAAGTGTCAATATGCGTACGGATAATTTGGGACTGGCTCCTTATGGCCGTGTCGATTTGAGCGGAGGTTCGTTCGGCACATTCCGCCGATCGGTCAAACTCGGTAGCGGACGCATCGGTCGCCATTGGGCAGTGGATGCCCGCCTGTCCAAAATCGGTTCGGACGGCTACGTGGATAGAGGAAGCGTGGATCTGAAATCCTATTTCGCACAGGTGGGCTATTTCGGTAGCAACACGGCTCTCAGGTTCATCACTTTCGGAGGAAAAGAAGTTACGGGTATCGCATGGAACGGTCTTTCCAAGGAGGATGAAGCCAAATATGGCCGCCGATACAACAGTGCCGGTCTTATGTACGTGGACGCGCAAGGAGTACCGCACTACTACCACAATACCGACAATTACGAGCAGCGTCACTACCATGCCATCATGACGCACAGCTTCTCTCCTTCCGTTATCCTCAACCTCACGGCACACTACACGGCCGGATATGGCTATACGGACGAATATCGTACCGGACGTAAACTAAAGGAATATGCACTGCAGCCCTATGTGGAAAACAGTGTGACCGTGAAGAAAACGGATCTCATCCGTCAGAAGTATCTGGACAATGACTTCGGAGGACTCATCGGTTCGCTTAACTGGCACACCGGTGCATGGGATTTGCAGTTCGGGGCCTCGGGCAATATCTATAAAGGAGACCACTTCGGCCGTATCACTTACATCAAAAAGTACAATCAGCCCTTAGCTCCCGACTTCGAATATTATCGGAACAGGGCAGACAAAAGAGAAGGTGCAGCCTTTGCCAAAGCCAACTGGCAGATCACTCCGGAACTGAACATGTATGCCGACCTCCAGTATCGTACCATCGGCTACACGATAAACGGCATCACGGACGAATATGATGAGGTACAGGGAAGTATGCAGCACATCGATTTGGACAAGACCTTCCGCTTCCTCAATCCGAAGGCCGGTCTTACCTATAGTTTCGACGATGCTCATACTGCCTATGCTTCTGTTGCGGTAGCACACCGCGAGCCTAACAGAACCAATTACACCGAAGCCGGAATAGGACAGTATCCTACGCCTGAGCGACTGATCGACTATGAGCTGGGCTACCGCTATGCTTCGCCCCTCTTGTCGGCCGGAGTAGGTCTCTATTATATGCAATACAAGGACCAACTCGTGCTGGATGGCCGTTTGAGCGATGTGGGACAGATGCTCACAAGCAACGTCCCCGACAGCTACCGTATGGGACTGGAGCTGACTCTCGGTTGGCAGATCCTTCCTCGTTTGCTGCGTTGGGATGCTTCTTTCACTATGAGTCGCAACAAAATCGACCGCTACGTACAATATACATCCGTATATGATGCGGACTACAACTGGCTCGAACTCAAGGAGGAGACCCTCGAAAGCACGGATATAGCCTACTCGCCCAATGTCATTGCCGGCAGCATGCTTACCCTCTCTCATGCCGGTTTCGAAATGGCTTGGACGAGCCGCTTCGTCAGCAAGCAATATCTGGACAATACACAGCGCAGCGATCGCATGCTTTCCTCCTATTGGGTGAACGACCTCCGCCTCGGCTATGTGCTGCCGGTTCACTTCGTTAAGAGAGTGGCACTGGGCGTACAGCTCAATAATCTCTTCAACCTCATGTATGCGTCCAATGCCTACATCTACGATGCCGGTTACGTACAGGCATCCGGAGAACTAAGTGCATATGCCGATCTGCGTTATTATCCTCAGGCCGGATTTAATGCACTGGGTAGTCTGACAATCGATTTC","6.90","-1.15","88699","MAENKPSSPEPDNTGVGNSPSDYLHGEAIIPPLSSLSNFNDKRFMKKLHMIAALAVLPFCLTAQAPVSNSEIDSLSNVQLQTVQVVATRATAKTPVAYTNVRKAELSKSNYGRDIPYLLMLTPSVVATSDAGTGIGYSGFRVRGTDANRINITTNGVPLNDSESQSVFWVNMPDFASSIEDLQVQRGVGTSTNGAGAFGASVNMRTDNLGLAPYGRVDLSGGSFGTFRRSVKLGSGRIGRHWAVDARLSKIGSDGYVDRGSVDLKSYFAQVGYFGSNTALRFITFGGKEVTGIAWNGLSKEDEAKYGRRYNSAGLMYVDAQGVPHYYHNTDNYEQRHYHAIMTHSFSPSVILNLTAHYTAGYGYTDEYRTGRKLKEYALQPYVENSVTVKKTDLIRQKYLDNDFGGLIGSLNWHTGAWDLQFGASGNIYKGDHFGRITYIKKYNQPLAPDFEYYRNRADKREGAAFAKANWQITPELNMYADLQYRTIGYTINGITDEYDEVQGSMQHIDLDKTFRFLNPKAGLTYSFDDAHTAYASVAVAHREPNRTNYTEAGIGQYPTPERLIDYELGYRYASPLLSAGVGLYYMQYKDQLVLDGRLSDVGQMLTSNVPDSYRMGLELTLGWQILPRLLRWDASFTMSRNKIDRYVQYTSVYDADYNWLELKEETLESTDIAYSPNVIAGSMLTLSHAGFEMAWTSRFVSKQYLDNTQRSDRMLSSYWVNDLRLGYVLPVHFVKRVALGVQLNNLFNLMYASNAYIYDAGYVQASGELSAYADLRYYPQAGFNALGSLTIDF","1999870 1997435","TIGR ID: PG1899","probable tonB-linked outer membrane receptor","Outer membrane, Extracellular","Residues 78-705 of PG1655 are 22% similar to a previously sequenced P.gingivalis protein in Genbank, AF237557_1. Residues 36-263 of PG1655 are 25% similar to a previously sequenced P.gingivalis protein in Genbank, Y07618.One weak hit in gapped BLAST; e.g. residues 487-777 are 25% similar to gb|AAD55894.1|AF139593_1 unknown of Xanthobacter autotrophicus.This sequence is similar to BT2390.","
InterPro
IPR000531
Domain
TonB-dependent receptor
PF00593\"[519-794]TTonB_dep_Rec
InterPro
IPR001156
Family
Peptidase S60, transferrin lactoferrin
PS00205\"[535-544]?TRANSFERRIN_1
InterPro
IPR012910
Domain
TonB-dependent receptor, plug
PF07715\"[90-201]TPlug
noIPR
unintegrated
unintegrated
G3DSA:2.170.130.10\"[89-208]TG3DSA:2.170.130.10
G3DSA:2.40.170.20\"[235-794]TG3DSA:2.40.170.20
SSF56935\"[80-794]TSSF56935


","BeTs to 3 clades of COG1629COG name: Outer membrane receptor proteins, mostly Fe transportFunctional Class: PThe phylogenetic pattern of COG1629 is -----q-CE--HUJ-------Number of proteins in this genome belonging to this COG is 8","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 12:22:39 MDT 2001","","Thu Jun 14 12:22:39 MDT 2001","Thu Jun 14 12:22:39 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:22:39 MDT 2001","Thu Jun 14 12:22:39 MDT 2001","","","Thu May 17 11:37:41 MDT 2001","Wed Dec 17 10:17:15 2003","Mon Mar 5 15:30:41 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 78-705 are 22% similar to PG1242, a predicted tonB-linked outer membrane receptor; 'PG47'. Similarities are also seen to PG0582, a predicted tonB-linked receptor T1r.","Wed Dec 17 10:17:15 2003","Mon Mar 5 15:30:41 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 92 to 794 (E-value = 2.7e-15) place PG1655 in the TonB_dep_Rec family which is described as TonB dependent receptor (PF00593)","Mon Jun 25 16:45:25 MDT 2001","34541505","","1) Ross,B., Barr,I., Patterson,M., Agius,C., Rothel,L., Margetts,M., Hocking,D. and Webb,E. P. gingivalis polypeptides and nucleic acids. Patent: Australia (AU 98/01023)-PCT 10-DEC-1998; CSL Ltd; 45 Poplar Road; R&D; Parkville, Victoria; Australia.2) Ross,B.C. Genomic analysis of Porphyromonas gingivalis for vaccine discovery. Unpublished. 3) Ross,B.C. Direct Submission. Submitted (22-FEB-2000) R&D, CSL Ltd, 45 Poplar Road, Parkville, Victoria 3052, Australia.","","Mon Mar 5 15:51:25 MST 2001","","1","","","PG1899" "PG1656","2000839","1999895","945","ATGGATGGAGTCGTAATTAAGAATACGGGTAGTCAGTATCTGGTGCGTTGCACGGATGGTACGGAGCTATACTGCATGGCGAAAGGCAATCTGCGTCTGAAAGGCATCCGCTCCACCAATCCCGTAACCGTAGGCGATCGCGTGGAGATTGTCCCCGCTTCTCAGGACGGACAGCCGGCCTACATCAAACGAATCCATCCCCGACGCAATTATATCATCAGGCGAGCCAGCAACCTCTCGAAAGAGTCCCATATACTGGGAGCCAATTTGGATGCTGCCGTGCTGGTCTGTACCATCAACGATCCGGTGACTACCACCGTCTTTATCGATCGTTTCCTCGCTACGGCAGAAGCCTATCGCGTACCGGTTATTCTTGTATTCAACAAAATAGACTGCTATACGCAAGAAGATCGCTTGCAATTGGACCGGCTGTCGGCTGTCTACACCGCCATAGGTTACCCCTGCTGCCACGTGTCGGCGATTACGGGCGAAGGCCTCCCGGATCTCAAATCCCTACTCGATGGCAAGCTGACACTCCTTGCCGGCCATTCGGGGGTTGGCAAAAGCTCTTTGATCAATGCCCTGATTCCTCATGCCGATTTGCGCACAGGGGCTATATCCCAAGCCCATCATACCGGCATGCATACGACCACATTTTCCCAAATGATCGACTTCCCCGATCTCTCCCCCGGGTCAGCTCTTATCGATACGCCCGGGATCAAAGGCTTCGGTACGCTGGAAATGGGCGAGTATGAAGTCTCTCATTATTTCCCGGAGATATTCGCTGCAAGTAAAGGCTGTCGATTCGGCAACTGCACGCATACGCACGAGCCGGGCTGTGCCGTTCTGGAAGCTCTTCGGAGGGGGGAGATAGCCGAGAGCCGCTATATCAGCTACTTGAGCATTCTCGAAGATGAAAATGCCGAGCGGTATCGTCCCGAATAC","6.70","-1.77","34538","MDGVVIKNTGSQYLVRCTDGTELYCMAKGNLRLKGIRSTNPVTVGDRVEIVPASQDGQPAYIKRIHPRRNYIIRRASNLSKESHILGANLDAAVLVCTINDPVTTTVFIDRFLATAEAYRVPVILVFNKIDCYTQEDRLQLDRLSAVYTAIGYPCCHVSAITGEGLPDLKSLLDGKLTLLAGHSGVGKSSLINALIPHADLRTGAISQAHHTGMHTTTFSQMIDFPDLSPGSALIDTPGIKGFGTLEMGEYEVSHYFPEIFAASKGCRFGNCTHTHEPGCAVLEALRRGEIAESRYISYLSILEDENAERYRPEY","2000838 1999894","TIGR ID: PG1900","conserved hypothetical protein","Cytoplasm","Residues 3-312 have 35% simialrity to AP001515, B. halodurans BH2503~unknown conserved protein.Residues 20-302 have 34% similarity to AE001811, T. maritima conserved hypothetical protein.Residues 2-311 have 30% similarity to AE006128, P. multocida hypothetical protein.This sequence is similar to BT2250.","
InterPro
IPR004881
Family
GTPase EngC
PF03193\"[2-304]TDUF258
TIGR00157\"[42-304]TGTPase_EngC
InterPro
IPR010914
Domain
EngC GTPase
PS50936\"[88-241]TENGC_GTPASE
noIPR
unintegrated
unintegrated
G3DSA:1.10.40.50\"[246-313]TG3DSA:1.10.40.50
G3DSA:3.40.50.300\"[78-245]TG3DSA:3.40.50.300
SSF50249\"[1-69]TNucleic_acid_OB
SSF52540\"[80-310]TSSF52540


","BeTs to 8 clades of COG1162COG name: Predicted GTPasesFunctional Class:� RThe phylogenetic pattern of COG1162 is -----Qvcebrh--gpo----Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 152-303 are 39% similar to a (PROTEIN ATP-BINDING MG110 T1F15.7 T1F15.10 YLOQ) protein domain (PD005268) which is seen in Q9ZBT9_STRCO.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Mar 6 17:42:09 MST 2001","Wed Dec 10 17:06:18 2003","Wed Dec 10 17:06:18 2003","","Tue Mar 6 17:42:09 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 6 17:42:09 MST 2001","-51% similar to PDB:1U0L Crystal structure of YjeQ from Thermotoga maritima (E_value = 3.9E_41);-47% similar to PDB:1T9H The crystal structure of YloQ, a circularly permuted GTPase. (E_value = 3.1E_30);","","","Residues 148 to 304 (E-value = 2.6e-51) place PG1656 in the DUF258 family which is described as Protein of unknown function, DUF258 (PF03193)","Tue Mar 6 17:42:09 MST 2001","34541506","","","","","","1","","","PG1900" "PG1657","2001445","2000927","519","ATGGAGAAGGCAGTGGAGTATCTGGACGAGCAGCTGTCTCATGTGCGTGCGGGAAAGGCCAGCCCCAAACTCCTCGATGGTATCATGGTCATGTACTACGGCAACGCCACTCCTCTGACACAGGTAGCATCCATCAATACGCCCGATGCGAAGACCATCGTTGTCACCCCGTGGGAGCGTTCCCTGATCAAGGATATAGAAAAGGCTATCATGGACTCTCCGCTCGGCATTACGCCCGAGAACAACGGTGAGCTGATCCGTCTGGGCCTTCCTCCTCTGACAGAAGAACGCCGTCGCCAGTTGGTGAAGCAGACCAAAGGAGATGCCGAGGACGCCAAGGTGAGTGTGCGCAATGCCCGTCGCGATGCCATCGATGCGATCAAGAAAAGCGTCAAGACCGATGGTACTCCTGAGGACGTAGCCAAAGATGCAGAGGCAGAGATGCAGAAGGTTCACGATCGTTATATCAAGAAGATCGACGAACTCTTTGCCGAAAAGGAAAAGGAAATCATGACCGTG","5.50","-2.51","19357","MEKAVEYLDEQLSHVRAGKASPKLLDGIMVMYYGNATPLTQVASINTPDAKTIVVTPWERSLIKDIEKAIMDSPLGITPENNGELIRLGLPPLTEERRRQLVKQTKGDAEDAKVSVRNARRDAIDAIKKSVKTDGTPEDVAKDAEAEMQKVHDRYIKKIDELFAEKEKEIMTV","2001483 2000926","TIGR ID: PG1901","ribosome recycling factor (ribosome releasing factor)","Cytoplasm","Numerous significant hits to ribosome recycling factor (ribosome releasing factor) in gapped BLAST; e.g. residues 1-171 are 50% similar to sp|P57984|RRF_PASMU ribosome recycling factor (ribosome releasing factor) (RRF) of Pasteurella multocida, residues 1-171 are 53% similar to gi|1173172| ribosome releasing factor (rrf) of Haemophilus influenzae Rd, residues 1-171 are 48% similar to gb|AAF11077.1|AE001995_2 ribosome recycling factor of Deinococcus radiodurans.","
InterPro
IPR002661
Family
Ribosome recycling factor
PD004103\"[1-171]TRRF_PORGI_Q7MTP6;
PTHR20982:SF3\"[1-173]TRIBOSOME RECYCLING FACTOR (RIBOSOME RELEASING FACTOR) (RRF)
PF01765\"[7-171]TRRF
TIGR00496\"[1-173]Tfrr: ribosome recycling factor
noIPR
unintegrated
unintegrated
G3DSA:1.10.132.20\"[54-173]Tno description
PTHR20982\"[1-173]TRIBOSOME RECYCLING FACTOR


","BeTs to 13 clades of COG0233COG name: Ribosome recycling factorFunctional Class: JThe phylogenetic pattern of COG0233 is ----yqvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** PF01765 (Ribosome recycling factor) with a combined E-value of 1.2e-68. PF01765A 15-59 PF01765B 66-118 PF01765C 131-171","Residues 11-173 are 50% similar to a (RIBOSOME FACTOR PROTEIN RELEASING) protein domain (PD004103) which is seen in RRF_BACSU.","","Thu Jun 14 12:22:48 MDT 2001","","Thu Jun 14 12:22:48 MDT 2001","Thu Jun 14 12:22:48 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:22:48 MDT 2001","Thu Jun 14 12:22:48 MDT 2001","","","Wed Mar 28 09:06:46 MST 2001","Mon Jun 25 16:43:17 MDT 2001","Wed Mar 28 08:58:43 MST 2001","Mon Jun 25 16:43:17 MDT 2001","Mon Jun 25 16:43:17 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 28 08:58:43 MST 2001","-69% similar to PDB:1IS1 Crystal structure of ribosome recycling factor from Vibrio parahaemolyticus (E_value = 1.1E_42);-69% similar to PDB:1EH1 RIBOSOME RECYCLING FACTOR FROM THERMUS THERMOPHILUS (E_value = 3.4E_41);-68% similar to PDB:1EK8 CRYSTAL STRUCTURE OF THE RIBOSOME RECYCLING FACTOR (RRF) FROM ESCHERICHIA COLI (E_value = 1.3E_40);-68% similar to PDB:1ZN0 Coordinates of RRF and EF-G fitted into Cryo-EM map of the 50S subunit bound with both EF-G (GDPNP) and RRF (E_value = 1.3E_40);-68% similar to PDB:1ZN1 Coordinates of RRF fitted into Cryo-EM map of the 70S post-termination complex (E_value = 1.3E_40);","","","Residues 7 to 171 (E-value = 6.8e-81) place PG1657 in the RRF family which is described as Ribosome recycling factor (PF01765)","Mon Jun 25 16:43:17 MDT 2001","161579528","","","","","","1","","","PG1901" "PG1658","2002240","2001524","717","ATGACTGCATATAAACGAGTGCTGCTCAAACTGAGCGGTGAGTCGCTCATGGGTGCTCAGCAATACGGCATCGACCCGAATCGGTTGGCCGATTATGCTTCGGACATCAAGGAGGCTTGTGCCATGGGCGTACAGATCGGCATCGTCATCGGAGGAGGCAATATCTTCCGCGGAGTGAGCGGTGCCGCCAAGGGATTCGACCGTGTCAAAGGAGATCAGATGGGTATGCTGGCCACGGTAATCAACAGCTTGGCTCTCAGCTCTGCTCTTGAGGGGGTAGGGGTGAAGACCAAAGTGCTCACGGCCGTACGTATGGAGCCGATAGGGGAGTTCTACAACAAATGGCATGCCATAGAATTGCTCGAACAGGGTTATGTGACCATTTTCTCTTGCGGTACAGGCAATCCTTTCTTCACTACGGATACCGGCTCATCGCTTCGCGGCATCGAGATAGAAGCCGATGCCATGCTCAAGGGGACGCGCGTGGATGGTATCTACACGGCAGATCCGGAGAAGGATCCCTCGGCTACGAAGTTCGACCGGATCACATACGATGAGATTTATGCCCGAGGTCTGAAAGTAATGGATCTGACTGCCACGGCCATGTGTATGGAGAACAACCTACCCATCGTCGTCTTCGATATGGATACGCCGGGAAACCTCCTCAAGGTGTTGAGAGGAGAGAAAATCGGTACTTATGTTTCAAATACGAGTGCT","5.00","-3.90","25692","MTAYKRVLLKLSGESLMGAQQYGIDPNRLADYASDIKEACAMGVQIGIVIGGGNIFRGVSGAAKGFDRVKGDQMGMLATVINSLALSSALEGVGVKTKVLTAVRMEPIGEFYNKWHAIELLEQGYVTIFSCGTGNPFFTTDTGSSLRGIEIEADAMLKGTRVDGIYTADPEKDPSATKFDRITYDEIYARGLKVMDLTATAMCMENNLPIVVFDMDTPGNLLKVLRGEKIGTYVSNTSA","2002239 2001523","TIGR ID: PG1902","uridylate kinase (uridine monophosphate kinase) (UMP kinase)","Cytoplasm","Numerous significant hits to uridylate kinase (uridine monophosphate kinase) (UMP kinase) in gapped BLAST; e.g. residues 3-239 are 47% similar to gbAAF83868.1AE003942_12 uridylate kinase of Xylella fastidiosa, residues 4-234 are 48% similar to gbAAG07042.1AE004785_6 uridylate kinase of Pseudomonas aeruginosa, residues 4-234 are 49% similar to gbAAF42420.1 uridylate kinase of Neisseria meningitidis MC58.This sequence is similar to BT2242.","
InterPro
IPR001048
Domain
Aspartate/glutamate/uridylate kinase
G3DSA:3.40.1160.10\"[4-234]TAa_kinase
PF00696\"[5-214]TAA_kinase
SSF53633\"[4-236]TAa_kinase
InterPro
IPR011817
Family
Uridylate kinase
PIRSF005650\"[5-236]TUridylate_kin
TIGR02075\"[4-235]TpyrH_bact
noIPR
unintegrated
unintegrated
PTHR21499\"[162-212]TPTHR21499


","BeTs to 15 clades of COG0528COG name: Uridylate kinaseFunctional Class: FThe phylogenetic pattern of COG0528 is amtk-qvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 89-234 are 48% similar to a (KINASE TRANSFERASE BIOSYNTHESIS ASPARTOKINASE GLUTAMATE) protein domain (PD000447) which is seen in PYRH_SYNY3.Residues 4-80 are 44% similar to a (KINASE URIDYLATE UMP TRANSFERASE) protein domain (PD005760) which is seen in O82852_PSEAE.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Mar 28 09:15:17 MST 2001","Thu Jul 24 14:46:19 2008","Wed Mar 28 09:15:17 MST 2001","","Wed Mar 28 09:15:17 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Jul 24 14:46:19 2008","-64% similar to PDB:1YBD Crystal structure analysis of uridylate kinase from Neisseria meningitidis (E_value = 1.5E_57);-64% similar to PDB:2BND THE STRUCTURE OF E.COLI UMP KINASE IN COMPLEX WITH UDP (E_value = 3.9E_53);-64% similar to PDB:2BNE THE STRUCTURE OF E. COLI UMP KINASE IN COMPLEX WITH UMP (E_value = 5.1E_53);-64% similar to PDB:2BNF THE STRUCTURE OF E. COLI UMP KINASE IN COMPLEX WITH UTP (E_value = 5.1E_53);-61% similar to PDB:2A1F Crystal Structure of Uridylate kinase (E_value = 5.8E_49);","","","Residues 5 to 214 (E-value = 2.3e-53) place PG1658 in the AA_kinase family which is described as Amino acid kinase family (PF00696)","Wed Mar 28 09:15:17 MST 2001","34541508","","","","","","1","","","PG1902" "PG1659","2004314","2002326","1989","ATGAAAGAAAAAGAGAAAATATACAGGCATTTGACCGAAGAAGAAATATCCGTGCTGGAAGGCAACTACTGCCAGTGCGCCGATTGGACGATGGTGGAGGTGGCCGATGGCTTTGACGCGAATCGTTGTCTGCACGTCATGTTCAGCGGACAGATCCGGATCGGATCCACGCGAGGAAGTCACTTGTTGCCGGGAGGCCTCCACGTGCCTACGGGTATCAATATCGCACGCCTGCACAACTGCATTGTCGGAGATGAAGTCGTCATCTTCCATGTCAATAGCTATTTGGCTAATTACAGAATAGGCGATTATACCCGAATCGAAAACATTGATACCATAGCCGTAACGGAATCCACCTCCTTCGGCAACGGCGTGGAGGTTACCGTGCTGAACGAAACCGGCGGACGTGAAGTTACGATCACTGACAACCTGACTGCCCAGACCGCCTATCTGATGGCCATGTACAGGCATGACAAGGTGCTGACCGAATCGCTTGCTGCTATGGCAAGAGCTTATGCCGAGTCGCGCCGGTCGGATATGGGAGCAATAGGCTCTCATGTGGTTATCCACGGATGCAATACGATAGAGAATGTTTGTATCGGAGATTATACCGAGATCACCGGTGCCTCGCATCTCTGCAACGGCAGTATCAATAGCAAGAAAGAGGCCCCCGTGTCGGTAGGCTACAATGTCGTCTGCCGCGATTTCATTCTCTGTTCGGGCAGCAGCGTTACGGATGGTGCTACCGTTTCGCACTGTTTTGTAGGGCAGGGTACTCATTTGGGGCACCTTTTCTCTGCACATGATTCGCTTTTCTTTGCCAACTGCCAAGGCGAAAACGGCGAGGCCTGTGCCGTCTTTGCCGGGCCATATACCGTGTCGATGCACAAGTCGAGCCTGCTCATTGCCGGTCTATACTCTTTCCTCAATGCCGGCAGCGGCTCTAACCAGAGCAATCACCTCTACAAGCTCGGCCCCATCCATCAGGGCATCGTGGAGCGCGGCTCGAAGACCACGAGCGACTCTTATATCCTTTGGCCATCCAGAATAGGGCCTTTCACGTTGGTGATGGGTCGACACGTACACCATATTGACAGCTCGGCCTTCCCCTTCTCTTATATCATAGAGGACCGTAACGAATCGTATTTGGTACCGGGTATCAATCTGCGCAGTGTGGGGACGATTCGTGACGCCAAGAAGTGGCCGGCGAGAGATAAGCGTAAAGATCCGGATTTGCTGGACAATATCAACTTCAATCTCTTGAGTCCTTTCACTGCCGGCAAGATGATGCGCGGCAGTCGGAAGCTGAAAAAGCTACGCAAGATACTGGGCAGTGAGGGACAAACCTATGTCTATCATGATATGCGCATACGTTCTTCTGCCTTGGACAAGGGGCTGATGTTCTATGAGATGGGGCTGAACAAGTTTTTCGGCAATTCCATCATCAAACGCCTTGAAGATTGTCCTTGCCGTACGGATGAGGAGGTGCTGAGTGCTCTCAAGCCGACTCACAATGAGGGAGACGGCAGCTGGGTGGACATCTGTGGCATGATCGCTCCACAACAACAGATCCACCGCCTTGCCTCCTTGATCAAAGAAGGCAAGATCAAAAGCCTTGCGGAGGTGAATGAGCGGATGAAGGAAATTCATAGCCGATACTACGACTATGAATGGTGCTGGGCATACAACGCTCTGCTCGAATGGTACGAACTGAACCCCGAGGATCTCACTCGATCCAAAGTAGCCGAACTGGTGCATACATGGATGCGTTCGGTGATTCGCTTGGATGAGATGCTCTATGAGGATGCCAAGAAGGAATTCCAAATGCACAGTCAGGTAGGCTTCGGAATAGACCTGGTAGGGGAGATGAAACACCGCGATTTCGATGAGGTGCGAGGCGATTTCGAAAGCAATCCCTTCATCGTCGAGGTGGTGGAGCACATCCGGAAAAAGCGTGCTCTCGGCGAAGAGATGCTCTCTCGTCTGGAG","6.60","-6.96","74411","MKEKEKIYRHLTEEEISVLEGNYCQCADWTMVEVADGFDANRCLHVMFSGQIRIGSTRGSHLLPGGLHVPTGINIARLHNCIVGDEVVIFHVNSYLANYRIGDYTRIENIDTIAVTESTSFGNGVEVTVLNETGGREVTITDNLTAQTAYLMAMYRHDKVLTESLAAMARAYAESRRSDMGAIGSHVVIHGCNTIENVCIGDYTEITGASHLCNGSINSKKEAPVSVGYNVVCRDFILCSGSSVTDGATVSHCFVGQGTHLGHLFSAHDSLFFANCQGENGEACAVFAGPYTVSMHKSSLLIAGLYSFLNAGSGSNQSNHLYKLGPIHQGIVERGSKTTSDSYILWPSRIGPFTLVMGRHVHHIDSSAFPFSYIIEDRNESYLVPGINLRSVGTIRDAKKWPARDKRKDPDLLDNINFNLLSPFTAGKMMRGSRKLKKLRKILGSEGQTYVYHDMRIRSSALDKGLMFYEMGLNKFFGNSIIKRLEDCPCRTDEEVLSALKPTHNEGDGSWVDICGMIAPQQQIHRLASLIKEGKIKSLAEVNERMKEIHSRYYDYEWCWAYNALLEWYELNPEDLTRSKVAELVHTWMRSVIRLDEMLYEDAKKEFQMHSQVGFGIDLVGEMKHRDFDEVRGDFESNPFIVEVVEHIRKKRALGEEMLSRLE","2004313 2002325","TIGR ID: PG1903","conserved hypothetical protein","Cytoplasm","Residues 3-429 have 29% similarity to AE001255, T. pallidum predicted coding region TP0851.This sequence is similar to BT2257.","
InterPro
IPR002173
Family
Carbohydrate kinase, PfkB
PS00583\"[311-335]?PFKB_KINASES_1
InterPro
IPR011004
Domain
Trimeric LpxA-like
SSF51161\"[79-259]TTrimer_LpxA_like


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 3-597 are 26% similar to a (HYPOTHETICAL 81.9 KD PROTEIN) protein domain (PD185595) which is seen in O83823_TREPA.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Mar 6 17:58:14 MST 2001","Wed Dec 10 17:12:13 2003","Tue Mar 6 17:58:14 MST 2001","","Tue Mar 6 17:58:14 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 6 17:58:14 MST 2001","-43% similar to PDB:1FOT STRUCTURE OF THE UNLIGANDED CAMP-DEPENDENT PROTEIN KINASE CATALYTIC SUBUNIT FROM SACCHAROMYCES CEREVISIAE (E_value = );","","","No significant hits to the Pfam 11.0 database","Tue Mar 6 17:58:14 MST 2001","34541509","","","","","","1","","","PG1903" "PG1659.1","2004854","2004528","327","TTGGAATCAGTCAAATGTTTCGACATGATTACTGCTTTTTTTGACCTCTCCGATTCCGTACACGTCGTTCGTAAAAATGGCGGTTTAGCGTTTGGAAAAACGTGGCTCGGGAATTTTTTCGTTTTGGTTCGGGAAGTAAAAATTTTACGCGCCACAACGGAAAAATTCTCGCTCGTGAATCTCAGAAAACTCGAACCGCATTCCGGCCAATTCCGGAACCAAATTCGTGAGGAATCTGCTTATAGGCATCCTTTTCTGCGCATCGTAGTGAAAGTAATCTTGGCGAAACGCCTTCGACCTCTCCCGTACCTTACTTCCAAATCTAAG","","","12632","LESVKCFDMITAFFDLSDSVHVVRKNGGLAFGKTWLGNFFVLVREVKILRATTEKFSLVNLRKLEPHSGQFRNQIREESAYRHPFLRIVVKVILAKRLRPLPYLTSKSK","","TIGR ID: PG1904","hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR012456
Family
Protein of unknown function DUF1661
PF07877\"[42-72]TDUF1661


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Tue Mar 6 18:00:58 MST 2001","","Tue Mar 6 18:00:25 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No significant paralogs were found using local BLAST search.","Tue Mar 6 18:00:25 MST 2001","Tue Mar 6 18:00:25 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Mar 6 18:00:25 MST 2001","34541510","","","","","","1","","","PG1904" "PG1660","2005447","2005007","441","CTCCATATTGTTATCAACGACAGGGGTGAAATCATCAACTATCAAATCACACCGGGCAATTGTGATGACAGAGAACCTCTGAAAGACGGAACATTCACCAAGAATCTTTTTGGCAAACTCATTGCCGATAGAGGCTACATTTCCCAAAACCTTTTTGACCGGCTCTTTGTCGATGACATCCACATGATAACCAAAATCAAAAAGAACATGAAGAACTCCCTGATGCATCTATATGACAAAGTTTTATTGAGAAAGAGAGCCCTGATCGAAACGGTCAATGATATGCTCAAAAATGTCTGTCAGATAGAGCACACGAGACATCGCAGTGTCAACAATTTTGTCACCAACCTGATCTCCGGTATCATCGCTTACAACATCCTGCCTAAAAAGCCTGAACTCAATATTGAAATCATCAGAAACCCTAACTTTCCTATTTCCGCT","10.00","6.10","17041","LHIVINDRGEIINYQITPGNCDDREPLKDGTFTKNLFGKLIADRGYISQNLFDRLFVDDIHMITKIKKNMKNSLMHLYDKVLLRKRALIETVNDMLKNVCQIEHTRHRSVNNFVTNLISGIIAYNILPKKPELNIEIIRNPNFPISA","2005263 2005006 [Shorter 2152 45 96]","TIGR ID: PG1905","ISPg3 C-terminal fragment","Cytoplasm","PG1660 is similar to a previously sequenced P.gingivalis protein in GenBank, AAC26596. Two significant hits in gapped BLAST; e.g. residues 1-133 are 53% similar to emb|CAA75664.1| transposase of Pasteurella multocida, residues 1-133 are 52% similar to emb|CAA75661.1| transposase of Pasteurella multocida.","
InterPro
IPR002559
Domain
Transposase, IS4-like
PF01609\"[2-126]TTransposase_11


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 59-133 are identical to a (PROTEASE PUTATIVE TRANSPOSASE PLASMID) protein domain (PD190030) which is seen in O87010_PORGI.Residues 1-55 are identical to a (TRANSPOSASE PLASMID PROTEIN ELEMENT) protein domain (PD004652) which is seen in O87010_PORGI.Residues 1-127 are 28% similar to a (HYPOTHETICAL 20.1 KD PROTEIN) protein domain (PD207068) which is seen in Q06444_BACST.","","Thu Jun 14 12:23:11 MDT 2001","","Thu Jun 14 12:23:11 MDT 2001","Thu Jun 14 12:23:11 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:23:11 MDT 2001","Thu Jun 14 12:23:11 MDT 2001","","Mon Jun 25 16:40:23 MDT 2001","Thu Feb 8 15:20:49 MST 2001","Mon Jun 25 16:40:23 MDT 2001","Thu Dec 21 14:53:57 MST 2000","","Mon Jun 25 16:40:23 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1660 is identical to the C-terminal amino acids of PG0718, PG0236, PG0178, PG1115, PG0919, all predicted ISPg3 transposases.Residues 1-146 are identical to residues 154-299 of PG0718.","Mon Jun 25 16:40:23 MDT 2001","Wed Mar 28 09:35:57 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 2 to 126 (E-value = 2.7e-14) place PG1660 in the Transposase_11 family which is described as Transposase DDE domain (PF01609)","Mon Jun 25 16:40:23 MDT 2001","","","","","","","1","","","PG1905" "PG1662","2005550","2006632","1083","ATGGCATACCAATCCAAGAATACCGATGAGCATGTAACATTTGCAGACGCACTCCTTTCAAAGCGTTATCGCAAAGCACAAAACGACTTCCTCAATCAGGTTGACAGGCTTATCGATTGGCGTCCGATCAGGACGCTGATCAACAAGAAATACACCAAGCGACAAAATGCCATCGGCGCCCCGGCTTATGACGTGATTCTCTTATTCAAGATGTTGCTTTTGGAGACATGGTACAACCTCAGTGATTGTGCTTTGGAGGAGCGCATCAATGATTCAATCACCTTTTCCCGATTCTTGGGGCTGAAGATGGAAGAGGTTTCTCCCGACCACAGTACCATCAGTCGATTTCGTTCGGCACTGACAGAGTTGGGTCTCATGGACAAACTATTGGCGCAGTTTAACAAACAACTTTCCCGCCATCACATTTCGGTCAGGGAAGGGGTGCTTGTCGATGCAAGCCTTGTGGAGACGCCGCATAAACCCAACGGAAGCATTACGATTGAAGTCGCAGACGACAGAGAAGACAATCGGAGCGAGGAGGAAAAAGAGGCAGAGGAGGATTATCAAAAACAGGTTGTCCGTCAGCGTAAAGGGACGGATGAAGAAGCCCGTTGGGTTTACAAACAAAAGCGTTATCACTACGGATACAAAAAGCATTGTCTGACCAATGTTCAAGGCATTGTTCAAAAGGTGATAACGACTGCAGCGAACCGCAGTGACACGAAGGAGTTTATTGCGCTATTGCAGGGTGCAAACATACCTCAAGGCTCAGCCGTCTTGGCGGACAAAGGATATGCTTGCGGGGAAAATCGTTCCTACCTGCAAACCCATCACCTTCAAGACGGCATCATGCACAAGGCACAACGCAACAGGGCATTGACCGAGGAAGAGAAGCAACGAAACAAAGCAATCAGTCGGATACGGAGCACCATCGAACGCACCTTTGGCAGTATTCGCCGGTGGTTTCATGGCGGACGATGTCGATACCGGGGACTTGCCAAGACCCATACTCAAAACATTCTTGAAAGCATCGCCTTTAATTTATACAGAACCCCGGGGATAATTATGTCCTCATTTGTAGGA","10.20","14.72","41742","MAYQSKNTDEHVTFADALLSKRYRKAQNDFLNQVDRLIDWRPIRTLINKKYTKRQNAIGAPAYDVILLFKMLLLETWYNLSDCALEERINDSITFSRFLGLKMEEVSPDHSTISRFRSALTELGLMDKLLAQFNKQLSRHHISVREGVLVDASLVETPHKPNGSITIEVADDREDNRSEEEKEAEEDYQKQVVRQRKGTDEEARWVYKQKRYHYGYKKHCLTNVQGIVQKVITTAANRSDTKEFIALLQGANIPQGSAVLADKGYACGENRSYLQTHHLQDGIMHKAQRNRALTEEEKQRNKAISRIRSTIERTFGSIRRWFHGGRCRYRGLAKTHTQNILESIAFNLYRTPGIIMSSFVG","2005549 2006631","Member of the IS5 family of elements. A full-length ISPg1 element.TIGR ID: PG1906","ISPg1 transposase (IS1106-related transposase)","Cytoplasm","PG1662 is equivalent to the previously sequenced AJ130872 and AB015879 in GenBANK. Residues 31-350 are 34% similar to the IS1106 sequence of N.meningitidis (AE002488).","
InterPro
IPR002559
Domain
Transposase, IS4-like
PF01609\"[147-348]TTransposase_11


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 157-302 are 87% similar to a (TRANSPOSASE PLASMID PROTEIN ELEMENT) protein domain (PD004652) which is seen in Q9ZA61_PORGI.Residues 12-109 are identical to a (TRANSPOSASE PROTEIN INSERTION ELEMENT) protein domain (PD007264) which is seen in Q9ZAD0_PORGI.Residues 303-361 are identical to a (TRANSPOSASE ORF7 INSERTION SEQUENCE IS1126-LIKE GENE) protein domain (PD187845) which is seen in Q9ZA61_PORGI.Residues 110-156 are identical to a (TRANSPOSASE ORF7 INSERTION SEQUENCE IS1126-LIKE GENE) protein domain (PD187846) which is seen in Q9ZA61_PORGI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Fri Feb 16 10:59:32 MST 2001","Mon Feb 12 09:48:53 MST 2001","Thu Dec 21 15:02:28 MST 2000","Thu Dec 21 14:57:22 MST 2000","","Mon Feb 12 09:42:37 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1662 is virtually identical to PG1267, PG0169, PG1050, PG1062, PG0740, PG0918, PG1422, PG0420, PG0499, and PG1099.Partial similarities exist to PG0732, PG0842, PG1607, PG0731, PG0884, PG1184, PG1087, PG0763, PG1755, PG0686, PG0756, PG1798, PG1230, PG1919, PG0044, PG0689, PG1215, PG1665, PG0839, PG1895, PG0883, PG11231, PG0730, PG1159 and PG1608. ","Fri Feb 16 10:59:32 MST 2001","","No significant hits to the PDB database (E-value < E-10).","","","Residues 147 to 348 (E-value = 2.2e-40) place PG1662 in the Transposase_11 family which is described as Transposase DDE domain (PF01609)","","34541511","","Hanley,S.A., Aduse-Opoku,J. and Curtis,M.A.A 55-kilodalton immunodominant antigen of Porphyromonas gingivalisW50 has arisen via horizontal gene transferInfect. Immun. 67 (3), 1157-1171 (1999)Maley,J. and Roberts,I.S.Characterisation of IS1126 from Porphyromonas gingivalis W83: a new member of the IS4 family of insertion sequence elementsMicrobiol. Lett. 123 (1-2), 219-224 (1994)Shibata,Y., Hayakawa,M., Takiguchi,H., Shiroza,T. and Abiko,Y.Determination and characterization of the hemagglutinin-associatedshort motifs found in Porphyromonas gingivalis multiple geneproducts. J. Biol. Chem. 274 (8), 5012-5020 (1999)","Knight,A.I., Ni,H., Cartwright,K.A. and McFadden,J.J.Identification and characterization of a novel insertion sequence, IS1106, downstream of the porA gene in B15 Neisseria meningitidis.Mol. Microbiol. 6 (11), 1565-1573 (1992)","Mon Feb 12 11:10:15 MST 2001","Mon Feb 12 15:35:40 MST 2001","1","","16","PG1906" "PG1663","2007249","2006701","549","ATGAAGACAAATATAGTTGATGTTTTTTGCATCATAGATGATTTCTCCAAGCTTTTTGATGAAACAATCAAGAAAAAGACCCTCGAAGAGGCAGACAAAAAACGCAGGAATAGAAAGTTTAAGATGTCGGACAGTGAGGTCATGACCATCCTGATCCTGTTTCATCTGTCAAGATACCGAGATTTGAAAGCTTTTTATCTTCAATACATCACCCACTCGTGTCGATCCGAGTTCCCACATCTTGTCTCTTATAATCGCTTTGTGGAGCTGCAAAGCAGGGTAGGTTTCAAGCTGATAGCATTTCTCAATATGTGTTGTTTGGGTCAATGTACTGGCATCTCTTTCATCGATTCCACCCCATTGAAGGCTTGTCATATCAAACGAGCTCATGGGCATAGGACGATGAGGGGATGGGCTCAAAAAGGCAAAAGCACCATGGGTTGGTTTTATGGATTCAAACTACATATGAGACCTTTGCAAAATAAGGAGGTGGAGGGAAGAGGAGTTCTTGGCATAAAAGGAGCGAGTGAAAGGGGTGGCAGTAAGGAG","10.50","16.39","21238","MKTNIVDVFCIIDDFSKLFDETIKKKTLEEADKKRRNRKFKMSDSEVMTILILFHLSRYRDLKAFYLQYITHSCRSEFPHLVSYNRFVELQSRVGFKLIAFLNMCCLGQCTGISFIDSTPLKACHIKRAHGHRTMRGWAQKGKSTMGWFYGFKLHMRPLQNKEVEGRGVLGIKGASERGGSKE","2007248 2006700","TIGR ID: PG1907","ISPg3 (IS195) transposase","Cytoplasm","PG1663 is equivalent to the previously sequenced >gb|AAC26596.1, a predicted ISPg3 transposase. Residues 1-156 are 47% similar to a transposase from Piscirickettsia salmonis (AF184152).","
InterPro
IPR002559
Domain
Transposase, IS4-like
PF01609\"[113-156]TTransposase_11


","BeTs to 3 clades of COG0112COG name: Glycine hydroxymethyltransferaseFunctional Class: EThe phylogenetic pattern of COG0112 is amtkYqvcebRhujgpolinxNumber of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","Residues 135-156 are 95% similar to a (TRANSPOSASE PLASMID PROTEIN ELEMENT) protein domain (PD004652) which is seen in O87010_PORGI.Residues 75-133 are identical to a (PROTEASE PUTATIVE TRANSPOSASE PLASMID) protein domain (PD190029) which is seen in O87010_PORGI.Residues 1-74 are identical to a (PUTATIVE PROTEASE PROTEASE) protein domain (PD203593) which is seen in O87010_PORGI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Feb 8 15:08:18 MST 2001","Thu Feb 8 15:08:18 MST 2001","Tue Jun 5 11:43:40 MDT 2001","","Tue Jun 5 11:43:40 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1663 is paralogous to PG0718, PG0236, PG0178, PG0919, and is similar to PG1115, PG1328, and PG0273 (in order of decreasing similarity), all predicted ISPg3-related transposase sequences. Weak simlarity is seen to PG1061.2 and PG1086.1, hypothetical proteins.","Tue Jun 5 11:43:40 MDT 2001","Tue Jun 5 11:43:40 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Jun 5 11:43:40 MDT 2001","","","Lewis,J.P. and Macrina,F.L.IS195, an insertion sequence-like element associated with protease genes in Porphyromonas gingivalis. Infect. Immun. 66 (7), 3035-3042 (1998)PubMed: 98298016","","Thu Feb 8 15:08:18 MST 2001","","1","","16","PG1907" "PG1663.1","2007536","2007868","333","ATGAGAAAATTCTTTTTGACAGTCTTATTGGCAGGAGCGTTTTCTATCGCAAATGCAGCCGATGTTACTGCAGTCACTTGTTCAACGCCTAACGGAGGAGAAACCCATGTAATGGTTTTTTGTACGGACGGCAGGAGTTGTGATTTTATCTTGAAAATACAGGGAGATGAGACAGATTACAACAATGTAATGAGTCAAGTTATGCAAGCAGCAAAGAGATTCTGCGCTTCTAATTTTCCATGTTTTAAAGTGAGTCAAAATTTGAACGCAGAAGCTCCTCAGACATTAGAACCCAAAACATCTTCAAATCCCATCCCTGGTAGAAAAATTAAG","","","12038","MRKFFLTVLLAGAFSIANAADVTAVTCSTPNGGETHVMVFCTDGRSCDFILKIQGDETDYNNVMSQVMQAAKRFCASNFPCFKVSQNLNAEAPQTLEPKTSSNPIPGRKIK","","NO TIGR ID corresponds to this gene.","hypothetical protein","Periplasm","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-19]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","16","" "PG1664","2007938","2008780","843","ATGACGTTATTTCGCATTTTATTTTACTTTCTACTTACTATAGTTGGTATCTATTCCCCTTCTGCTCAGGAAATAACATTGGAGGCTTTCAAAACAGATACTCTTGATAAGGTTTTCCTTAATAAATGCATTTATAGGGTATACTACCAAACTGAAATTAAGCAGGACACTTCACAAAATCTCCCTAATAGAGGGTTAACACTGCTACAGATAGGATCAAAAATGAGTAAATTTATCGATTTCTATCAGCATTATACAGATTCACTTAGAGATGAAACAGCAAGAAAAAAAAATCATTCGCTTGCCACGAGTGAAGTGACAAATTTCCAGTACTCTCTATATTCCAAAATTATATTCCGAAACCAAGTATTTAGAAATTATCCCCAAAAGGACATCAATACAGTAAGATTAGGAACTGAATTCGGTGAATATTTCACTTATGAAGAAATAGCCCCACGGTTTGACTGGGAAATTTCACTGAATGAAGAAAAGAATATCAAAGGATATCGATGTAAAAAAGCTACATGTTCTTATAGAGGACGGATTTATCAGGCTTGGTATTCAGAAGATATTCCTATTCCTATGGGGCCATATGTCTTTGGAGGCTTACCCGGCTTGATCATGGAGATTCGAGACTCTAATAACGAGTATGTTTTTGTTGCAATGGCAGTCTTGTTGATAAAAAATTATGATCCCATATATCGAGTGAATACGCCTTATGAATTCCTTTATGAAAGAGATAAATCTTGGCATGAAATCAAGAAAAGTTATCAAAATCTATATTTTGAGATTGATGGGAAAATTCTCCGATCAGTGACACCATACAATCCAATTGAAAAGGAT","8.30","2.59","33423","MTLFRILFYFLLTIVGIYSPSAQEITLEAFKTDTLDKVFLNKCIYRVYYQTEIKQDTSQNLPNRGLTLLQIGSKMSKFIDFYQHYTDSLRDETARKKNHSLATSEVTNFQYSLYSKIIFRNQVFRNYPQKDINTVRLGTEFGEYFTYEEIAPRFDWEISLNEEKNIKGYRCKKATCSYRGRIYQAWYSEDIPIPMGPYVFGGLPGLIMEIRDSNNEYVFVAMAVLLIKNYDPIYRVNTPYEFLYERDKSWHEIKKSYQNLYFEIDGKILRSVTPYNPIEKD","2007937 2008779","TIGR ID: PG1908","hypothetical protein","Outer membrane, Periplasm, Inner membrane, Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR005901
Family
Porphyromonas gingivalis protein
TIGR01200\"[2-281]TPorph_ging


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Mar 6 18:05:38 MST 2001","","Tue Mar 6 18:05:38 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 2-261 have 30% similarity to PG0402, a hypothetical protein.Residues 3-281 have 30% similarity to PG0401, a conserved hypothetical protein.","Tue Jun 5 11:52:13 MDT 2001","Tue Mar 6 18:05:38 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Jun 5 11:52:13 MDT 2001","34541512","","","","","","1","","16","PG1908" "PG1664.1","2009057","2008809","249","GTGCAAGTAGCTCCTCAAGGGGGATTTACAACTACTTTCACTCCTTACTGCCACCCCTTTTCCCTCCCCCCGTTTTATGTGAAGAATTCCTCTTCCCTCCATTTCCTTATTTTTCAAAGGTCTCATAAAAACGCTATCAAATTAGGATTATGTCCTATTTCTATCCGAAACTATAAGGCTCTATTGGACCTTGGTCGAAGAATCAAATTCGAACTAACGAAAACTAACTCTCTGCGGAATTTGGCTTTT","","","9454","VQVAPQGGFTTTFTPYCHPFSLPPFYVKNSSSLHFLIFQRSHKNAIKLGLCPISIRNYKALLDLGRRIKFELTKTNSLRNLAF","","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No hit found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","16","" "PG1665","2009861","2009085","777","ATGGAAGAGGTATCTCCCGACCACAGCACCATCAGTCGATTTCGTTCGGCACTGACAGAGTTGGGGCTCATGGACAAACTATTGGCGCAGTTTAACAAACAACTTTCCCGCCATCACATTTCGGTCAGGGAAGGGGTGCTTGTCGATGCAAGCCTTGTGGAGACGCCGCATAAACCCAACGGAAGCATTACGATTGAAGTCGCAGACGACAGAGAAGACAATCGGAGCGAGGAGGAAAAAGAGGCAGAGGAGGATTATCAAAAACAGGTTGTCCGTCAGCGTAAAGGGACGGATGAAGAAGCCCGTTGGGTTTACAAACAAAAGCGTTATCACTACGGATACAAAAAGCATTGTCTGACCAATGTTCAAGGCATTGTTCAAAAGGTGATAACGACNGCAGCGAAyCGCAGTGACACGAAGGAGTTTATTNCGCTATTGCAGGGTGCAAACATACCTCAAGGCACAGCCGTCTTCGCGGACAAAGGATATGCTTGCGGGGAAAATCGTTCCTACCTGCAAACCCATCACCTTCAAGACGGCATCATGCACAAGGCACAACGCAACAGGGCATTGACCGAGGAAGAGAAGCAAGGAAACAAAGCAATCGGTCCGATACGGAGCACCATCGAACGCACCTTTGGCAGTATTCGGCGGTGGTTTCATGGCGGACGATGTCGATACCGGGGACTTGCCAAGACCCATACTCAAAACATTCTTGAAAGCATCGCCTTTAATTTATACAGAACGCCGGGGATAATTATGTCCTCATCCGTAGGA","9.80","8.52","29426","MEEVSPDHSTISRFRSALTELGLMDKLLAQFNKQLSRHHISVREGVLVDASLVETPHKPNGSITIEVADDREDNRSEEEKEAEEDYQKQVVRQRKGTDEEARWVYKQKRYHYGYKKHCLTNVQGIVQKVITTAABRSDTKEFIXLLQGANIPQGTAVFADKGYACGENRSYLQTHHLQDGIMHKAQRNRALTEEEKQGNKAIGPIRSTIERTFGSIRRWFHGGRCRYRGLAKTHTQNILESIAFNLYRTPGIIMSSSVG","2009860 2009084","Member of the IS5 family of elements. Reproduces the middle and C-terminal domains of full-length ISPg1 elements (e.g. PG1662).TIGR ID: PG1909","ISPg1 transposase fragment(IS1106-related transposase)","Cytoplasm","PG1665 is approximately equivalent to the previously sequenced AB015879 in GenBANK. See also AJ130872. Residues 6-248 are 33% similar to an IS1106 transposase from N.meningitidis (AE002488).","
InterPro
IPR002559
Domain
Transposase, IS4-like
PF01609\"[45-246]TTransposase_11


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 201-259 are identical to a (TRANSPOSASE ORF7 INSERTION SEQUENCE IS1126-LIKE GENE) protein domain (PD187845) which is seen in Q9ZAD0_PORGI.Residues 55-200 are 84% similar to a (TRANSPOSASE PLASMID PROTEIN ELEMENT) protein domain (PD004652) which is seen in Q9ZAD0_PORGI.Residues 8-54 are identical to a (TRANSPOSASE ORF7 INSERTION SEQUENCE) protein domain (PD187846) which is seen in Q9ZA61_PORGI.","","Wed Mar 22 11:40:16 MST 2000","Wed Mar 22 11:40:16 MST 2000","","","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:23:27 MDT 2001","Fri Sep 14 12:50:45 2001","","Mon Jun 25 16:35:51 MDT 2001","Fri Feb 16 12:08:35 MST 2001","Wed Jan 3 13:48:04 MST 2001","Wed Jan 3 12:16:36 2001","","Mon Jun 25 16:35:51 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1665 is virtually identical to PG1087, PG0763, PG1755, PG0686, PG0756, PG1798, PG1230, PG1919, PG0044, PG0689, PG1215, PG1184, PG0839, PG1895, all ISPg1 fragments that reproduce the middle and C-terminal residues of PG1267, PG0169, PG1050, PG1062, PG0740, PG0918, PG1662, PG1422, PG0420, PG0499, PG1099.Also, partial similarities to PG0732, PG0842, PG0883, PG1231, PG0730, PG1159, PG1608.","Fri Feb 16 12:08:35 MST 2001","Thu Jun 14 12:23:27 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 45 to 246 (E-value = 1.1e-36) place PG1665 in the Transposase_11 family which is described as Transposase DDE domain (PF01609)","Mon Jun 25 16:35:51 MDT 2001","","","Hanley,S.A., Aduse-Opoku,J. and Curtis,M.A.A 55-kilodalton immunodominant antigen of Porphyromonas gingivalisW50 has arisen via horizontal gene transferInfect. Immun. 67 (3), 1157-1171 (1999)Maley,J. and Roberts,I.S.Characterisation of IS1126 from Porphyromonas gingivalis W83: a new member of the IS4 family of insertion sequence elementsMicrobiol. Lett. 123 (1-2), 219-224 (1994)Shibata,Y., Hayakawa,M., Takiguchi,H., Shiroza,T. and Abiko,Y.Determination and characterization of the hemagglutinin-associatedshort motifs found in Porphyromonas gingivalis multiple geneproducts. J. Biol. Chem. 274 (8), 5012-5020 (1999)","Knight,A.I., Ni,H., Cartwright,K.A. and McFadden,J.J.Identification and characterization of a novel insertion sequence, IS1106, downstream of the porA gene in B15 Neisseria meningitidis.Mol. Microbiol. 6 (11), 1565-1573 (1992)","Wed Feb 14 11:42:38 MST 2001","Wed Feb 14 11:42:38 MST 2001","1","","16","PG1909" "PG1666","2010857","2010378","480","ATGAGACATAATAAGAAATTCAATCACTTGGGCCGTAAGGCTGCTCACCGTAAAGCGATGCTGTCCAATATGGCTGCTTCGTTGATCCTGCACAAACGCATTTTTACAACGGTAGCCAAGGCTAAGGCCTTGCGTATCTATGTAGAGCCTTTGCTGACAAAAACAAAGGAAGACACAACGCACTCTCGCCGAATCGCCTTCTCTTACTTACAGAATAAATATGCCTTGAAGGAACTTTTCGGAGATGTTGCTGCTAAGATTGCAGATCGTCCCGGTGGATATACCCGTATCTTGAAGACCGGTTATCGTCTGGGAGATAATGCTGCTATGTGCTTTATTGAGCTTGTTGACTACAATGAGAATATGCTTGGCGAAGCAGCGAAGAAGGCGACCAAAACACGCCGTTCTCGTAAGCGTAAAAGCGCAGACGTTGTAGTAGAAGCAGCTCCTGCAGAAGAAACTCCTAAAGCAGCAGAAGAA","10.90","17.15","18020","MRHNKKFNHLGRKAAHRKAMLSNMAASLILHKRIFTTVAKAKALRIYVEPLLTKTKEDTTHSRRIAFSYLQNKYALKELFGDVAAKIADRPGGYTRILKTGYRLGDNAAMCFIELVDYNENMLGEAAKKATKTRRSRKRKSADVVVEAAPAEETPKAAEE","50S ribosomal protein L17","TIGR ID: PG1910","50S ribosomal protein L17","Cytoplasm, Periplasm","This sequence is also orthologous to CT505 of Chlamydia trachomatis.Numerous significant hits in gapped BLAST to 50S ribosomal protein L17; e.g. residues 1-117 are 54% similar to AE004841 of Pseudomonas aeruginosa, residues 1-117 are 51% similar to AE006177 of Pasteurella multocida, residues 1-160 are 37% similar to AE001203 of Treponema pallidum.","
InterPro
IPR000456
Family
Ribosomal protein L17
PD004277\"[23-110]TRibosomal_L17
PTHR14413\"[1-122]TRibosomal_L17
PF01196\"[20-116]TRibosomal_L17
TIGR00059\"[6-117]TL17
PS01167\"[34-56]TRIBOSOMAL_L17
noIPR
unintegrated
unintegrated
G3DSA:3.90.1030.10\"[1-117]TG3DSA:3.90.1030.10
PTHR14413:SF3\"[1-122]TPTHR14413:SF3
SSF64263\"[14-117]TSSF64263


","BeTs to 13 clades of COG0203COG name: Ribosomal protein L17Functional Class: JThe phylogenetic pattern of COG0203 is ----yqvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB000456 (Ribosomal protein L17) with a combined E-value of 1.9e-45. IPB000456A 22-62 IPB000456B 63-116","Residues 1-116 are 54% similar to a (RIBOSOMAL PROTEIN L17 50S) protein domain (PD004277) which is seen in RL17_PSEAE.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","Wed Mar 22 11:22:22 MST 2000","","Wed Mar 22 11:22:22 MST 2000","Thu Jun 7 16:05:06 MDT 2001","Thu Jun 7 16:05:06 MDT 2001","Thu Jun 7 16:05:06 MDT 2001","Thu Jun 7 16:05:06 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Jun 7 16:05:06 MDT 2001","-68% similar to PDB:1P85 Real space refined coordinates of the 50S subunit fitted into the low resolution cryo-EM map of the EF-G.GTP state of E. coli 70S ribosome (E_value = 4.9E_28);-68% similar to PDB:1P86 Real space refined coordinates of the 50S subunit fitted into the low resolution cryo-EM map of the initiation-like state of E. coli 70S ribosome (E_value = 4.9E_28);-68% similar to PDB:1VS6 Crystal structure of the bacterial ribosome from escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution. this file contains the 50s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes and is described in remark 400. (E_value = 4.9E_28);-68% similar to PDB:1VS8 Crystal structure of the bacterial ribosome from escherichia coli in complex with the antibiotic kasugamyin at 3.5a resolution. this file contains the 30s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes and is described in remark 400. (E_value = 4.9E_28);-68% similar to PDB:2AW4 Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution. This file contains the 50S subunit of one 70S ribosome. The entire crystal structure contains two 70S ribosomes and is described in remark 400. (E_value = 4.9E_28);","","","Residues 20 to 116 (E-value = 1.6e-41) place PG1666 in the Ribosomal_L17 family which is described as Ribosomal protein L17 (PF01196)","Thu Jun 7 16:05:06 MDT 2001","34541513","","","","","","1","","","PG1910" "PG1667","2011855","2010866","990","ATGGCAATATTAGCATTTCAGAAACCCGAAAATGTATTGATGATGGAGACGTCGGACTCGATCGCCAAGTTCGAGTTCAAACCTTTGGAGCCCGGTTATGGTATTACCATTGGCAATGCGCTTCGTCGAATACTCTTGTCTTCGCTTGAAGGTTTTGCGATTACTGCAATCAAGATTGAAGGTGTAGAGCATGAATTTGCTACTATTCCGGGTGTATTGGAGGACGTTACTAATATTATCCTCAATCTCAAACAAGTTCGTTTTAAGCAGATTGTTCCTAATGCCGATGTAGAGAAAGCTACAATTGTTATCTCTAATTCGGAGGTGTTCCGTGCCGGTGATTTGAATGCACAACTTTCAAACTTTGAAGTGTTGAATTCGAATCTTGTCATTTGCCACCTCGATAAGTCGGCTACGCTTACTATGGAGTTTTCCATAAATAAGGGGCGTGGCTATGTGTCGGCAGAAGAGAATCGCGCAGAGCATAATGAGCTTTCCACGATAGCGATCGACTCAATCTATACGCCTATTCGGAATGTCAAGTATGCGGTAGAGAATTTCCGCGTAGAACAGAAGACTGATTACGAAAAGCTCCTGATGGAAGTGACCACAGATGGTTCGATCCGTCCTGTAGATGCTCTTCGTGAAGCAGCTCAAATCTTGATATCCCACTTCTCTCTGTTTGCAGAGAATAAGATAGCGATAGAGTATGTGGATATAGTCGATACTGATGAGTTCGATGAAGATTCTCTGCATATGCGTCAACTATTGAAGTCAAAGCTTTCAGGTCTTGACCTGTCTGTTCGTGCCCTCAATTGTCTGAATGCAGCCGGAGTAGATACGTTGGGCGATTTAGTGAGTCTGTCACGGAGCGATCTGATGAAGATTCGCAACTTCGGAAAGAAGTCTTTGACTGAGCTTGACGAACTGCTGGCAACGCTGAATTTGTCGTTTGGGATGGATATCAGTAAGTATAAATTAGATAAAGAC","4.70","-13.86","36785","MAILAFQKPENVLMMETSDSIAKFEFKPLEPGYGITIGNALRRILLSSLEGFAITAIKIEGVEHEFATIPGVLEDVTNIILNLKQVRFKQIVPNADVEKATIVISNSEVFRAGDLNAQLSNFEVLNSNLVICHLDKSATLTMEFSINKGRGYVSAEENRAEHNELSTIAIDSIYTPIRNVKYAVENFRVEQKTDYEKLLMEVTTDGSIRPVDALREAAQILISHFSLFAENKIAIEYVDIVDTDEFDEDSLHMRQLLKSKLSGLDLSVRALNCLNAAGVDTLGDLVSLSRSDLMKIRNFGKKSLTELDELLATLNLSFGMDISKYKLDKD","","Other RNA polymerase subunits are PG0360 (beta) and PG0361 (beta').TIGR ID: PG1911","RNA polymerase alpha subunit (DNA-directed RNA polymerase alpha subunit) (transcriptase alpha chain)","Cytoplasm","Numerous significant hits to DNA-directed RNA polymerase alpha subunit (RNA polymerase alpha subunit) (transcriptase alpha chain) in gapped BLAST; e.g. residues 8-322 are 38% similar to gb|AAD47422.1|AF111855_1 RNA polymerase alpha subunit of Agrobacterium tumefaciens, residues 23-316 are 44% similar to dbj|BAB03881.1| DNA-directed RNA polymerase alpha subunit of Bacillus halodurans, residues 6-320 are 42% similar to gb|AAD40610.1|AF115283_29 RNA polymerase alpha-subunit of Leptospira interrogans.This sequence is similar to BT2701.","
InterPro
IPR002035
Domain
von Willebrand factor, type A
PR00453\"[9-26]T\"[199-207]TVWFADOMAIN
InterPro
IPR009025
Domain
RNA polymerase, RBP11-like
SSF55257\"[1-229]TRNAP_RBP11-like
InterPro
IPR011260
Domain
RNA polymerase, alpha subunit, C-terminal
PD001179\"[268-322]TRNAP_alpha_C
PF03118\"[249-313]TRNA_pol_A_CTD
InterPro
IPR011261
Domain
RNA polymerase, dimerisation
PF01193\"[16-230]TRNA_pol_L
InterPro
IPR011262
Domain
RNA polymerase, insert
G3DSA:2.170.120.12\"[51-174]TRNAP_insert
PF01000\"[57-175]TRNA_pol_A_bac
SSF56553\"[51-175]TRNAP_insert
InterPro
IPR011263
Domain
RNA polymerase, RpoA/D/Rpb3-type
SM00662\"[21-231]TRPOLD
InterPro
IPR011773
Family
DNA-directed RNA polymerase, alpha subunit
TIGR02027\"[21-321]TrpoA
noIPR
unintegrated
unintegrated
G3DSA:1.10.150.20\"[250-325]TG3DSA:1.10.150.20
SSF47789\"[253-327]TSSF47789


","BeTs to 13 clades of COG0202COG name: DNA-dependent RNA polymerase alpha subunitFunctional Class: KThe phylogenetic pattern of COG0202 is amtkYqvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 23-311 are 44% similar to a (RNA POLYMERASE ALPHA SUBUNIT) protein domain (PD001179) which is seen in RPOA_BACHD.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","Wed Mar 28 10:42:10 MST 2001","Wed Dec 17 11:55:54 2003","Wed Mar 28 10:42:10 MST 2001","Wed Dec 17 11:55:54 2003","Tue Mar 26 16:10:24 2002","","Wed Mar 28 10:42:10 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 28 10:42:10 MST 2001","-58% similar to PDB:1L9U THERMUS AQUATICUS RNA POLYMERASE HOLOENZYME AT 4 A RESOLUTION (E_value = 1.1E_46);-58% similar to PDB:1L9Z Thermus aquaticus RNA Polymerase Holoenzyme/Fork-Junction Promoter DNA Complex at 6.5 A Resolution (E_value = 1.1E_46);-58% similar to PDB:1YNJ Taq RNA polymerase-Sorangicin complex (E_value = 1.1E_46);-58% similar to PDB:1YNN Taq RNA polymerase-rifampicin complex (E_value = 1.1E_46);-58% similar to PDB:2GHO Recombinant Thermus aquaticus RNA polymerase for Structural Studies (E_value = 1.1E_46);","","","Residues 16 to 230 (E-value = 1.4e-19) place PG1667 in the RNA_pol_L family which is described as RNA polymerase Rpb3/Rpb11 dimerisation domain (PF01193)Residues 57 to 175 (E-value = 2.9e-34) place PG1667 in the RNA_pol_A_bac family which is described as RNA polymerase Rpb3/RpoA insert domain (PF01000)Residues 249 to 313 (E-value = 2.9e-17) place PG1667 in the RNA_pol_A_CTD family which is described as Bacterial RNA polymerase, alpha chain C terminal domain (PF03118)","Wed Dec 17 11:55:54 2003","34541514","","","","","","1","","","PG1911" "PG1668","2012473","2011871","603","ATGGCAAGATATACAGGCCCTAAATCCAAGATCGCGCGTAAGTTTGGCGATCCTATCTTTGGTGCAGATAAAGTTCTTTCCAAGAAGAATTATCCTCCAGGTCAGCATGGCAATAACCGTCGTCGTAAGACGAGCGAGTATGGCCTCCAGCTTCGTGAAAAGCAAAAAGCAAAATATACTTACGGTGTATTGGAGAAGCAATTCCGTCATTTGTTCCATCGTGCACAGCGCGCAAAGGGTGTAACGGGTGAGTTGCTTATTCAGTTCTTGGAAGCACGTTTGGATAATGTGGTGTTCCGTTTGGGGATTGCCCCGACGCGTTCTGCTGCACGTCAATTGGTTTCCCATCGTCATATTACCGTAGATGGCAGTGTTGTCAACATTCCTTCTTATTCTGTTAAGCCCGGTCAGGTGATCGGCGTTCGTGAGCGTTCTAAGTCCTTAGAGGTTATTGCTGATGCTTTGACAGGTTTCAATCACAGCAAATATCCTTGGATGGAGTGGGATCAGTCGTCATTGTCCGGTAAGCTGCTGCATATGCCGGATCGTACGGACATCCCTGAAAATATTAAGGAACAGCTGATCGTTGAATTGTATTCGAAA","10.90","17.68","22912","MARYTGPKSKIARKFGDPIFGADKVLSKKNYPPGQHGNNRRRKTSEYGLQLREKQKAKYTYGVLEKQFRHLFHRAQRAKGVTGELLIQFLEARLDNVVFRLGIAPTRSAARQLVSHRHITVDGSVVNIPSYSVKPGQVIGVRERSKSLEVIADALTGFNHSKYPWMEWDQSSLSGKLLHMPDRTDIPENIKEQLIVELYSK","2012472 2011870","TIGR ID: PG1912","30S ribosomal protein S4","Cytoplasm","Numerous significant hits to 30S ribosomal protein S4 in gapped BLAST; e.g. residues 1-201 are 53% similar to dbj|BAB06928.1| 30S ribosomal protein S4 of Bacillus halodurans, residues 1-201 are 53% similar to sp|P81288|RS4_BACST 30S ribosomal protein S4 of Bacillus stearothermophilus, residues 1-201 are 52% similar to gb|AAG07627.1|AE004841_5 30S ribosomal protein S4 of Pseudomonas aeruginosa.","
InterPro
IPR001912
Family
Ribosomal protein S4
PTHR11831\"[89-134]TRibosomal_S4
PF00163\"[2-91]TRibosomal_S4
PS00632\"[90-114]TRIBOSOMAL_S4
InterPro
IPR002942
Domain
RNA-binding S4
PF01479\"[92-139]TS4
SM00363\"[92-156]TS4
PS50889\"[92-154]TS4
InterPro
IPR005709
Family
Ribosomal protein S4, bacterial and organelle form
TIGR01017\"[3-201]TrpsD_bact
noIPR
unintegrated
unintegrated
G3DSA:1.10.1050.10\"[1-105]TG3DSA:1.10.1050.10
SSF55174\"[2-201]TSSF55174


","BeTs to 17 clades of COG0522COG name: Ribosomal protein S4 and related proteinsFunctional Class: JThe phylogenetic pattern of COG0522 is amtkYqvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB001912 (Ribosomal protein S4) with a combined E-value of 2.1e-36. IPB001912A 50-67 IPB001912B 89-131","Residues 40-145 are 34% similar to a (PROTEIN RIBOSOMAL MITOCHONDRION S4) protein domain (PD020804) which is seen in RT04_MARPO.Residues 1-122 are 55% similar to a (RIBOSOMAL PROTEIN S4 30S) protein domain (PD001572) which is seen in RS4_MYCTU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Mar 22 10:17:20 MST 2000","Wed Mar 28 10:57:48 MST 2001","Wed Mar 28 10:57:48 MST 2001","Wed Mar 28 10:57:48 MST 2001","Wed Mar 28 10:57:48 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 28 10:57:48 MST 2001","-63% similar to PDB:1FKA STRUCTURE OF FUNCTIONALLY ACTIVATED SMALL RIBOSOMAL SUBUNIT AT 3.3 A RESOLUTION (E_value = 5.8E_49);-63% similar to PDB:1HNW STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH TETRACYCLINE (E_value = 5.8E_49);-63% similar to PDB:1HNX STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH PACTAMYCIN (E_value = 5.8E_49);-63% similar to PDB:1HNZ STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH HYGROMYCIN B (E_value = 5.8E_49);-63% similar to PDB:1IBK STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH THE ANTIBIOTIC PAROMOMYCIN (E_value = 5.8E_49);","","","Residues 2 to 91 (E-value = 1.1e-25) place PG1668 in the Ribosomal_S4 family which is described as Ribosomal protein S4/S9 N-terminal domain (PF00163)Residues 92 to 139 (E-value = 3.5e-21) place PG1668 in the S4 family which is described as S4 domain (PF01479)","Wed Mar 28 10:57:48 MST 2001","34541515","","","","","","1","","","PG1912" "PG1669","2013019","2012636","384","ATGGCAAAGAAAGCAGTCGCAAAAAAGAAAGTTGTAAGGGTGGAAGCAGTGGGACAGGCTCATATTCATTCTTCCTTTAACAACATTATTATTTCCTTAGCGAACAGCGAAGGTCAGGTTATCAGCTGGTCTTCAGCCGGTAAAATGGGATTTCGTTCTTCAAAGAAGAATACTCCCTATGCTGCCCAGATGGCAGCTCAGGATTGTGCCAAAGTGGCATATGATATGGGCTTGCGCAAGGTAACGGTCTACGTTAAGGGCCCGGGTAATGGTCGTGAATCGGCTATTAGAACAATTCATGGAGCGGGAATCGAGGTTATGGAGATTATTGATGTAACGCCTATGCCTCATAACGGTTGTCGTCCTCCTAAAAAGAGAAGAGTT","11.00","13.85","13816","MAKKAVAKKKVVRVEAVGQAHIHSSFNNIIISLANSEGQVISWSSAGKMGFRSSKKNTPYAAQMAAQDCAKVAYDMGLRKVTVYVKGPGNGRESAIRTIHGAGIEVMEIIDVTPMPHNGCRPPKKRRV","30S ribosomal protein S11","The S11 protein is believed to select the correcttRNA during polypeptide biosynthesis.TIGR ID: PG1913","30S ribosomal protein S11","Cytoplasm, Extracellular","Numerous significant hits to ribosomal protein S11 in gapped BLAST; e.g. residues 33-128 are 53% similar to dbj|BAB13194.1| 30S ribosomal protein S11 of Buchnera sp. APS, residues 33-128 are 54% similar to gb|AAC22459.1| ribosomal protein S11 (rpS11) of Haemophilus influenzae Rd, residues 33-128 are 58% similar to gb|AAK23252.1| ribosomal protein S11 of Caulobacter crescentus.","
InterPro
IPR001971
Family
Ribosomal protein S11
PD001010\"[18-92]TRibosomal_S11
G3DSA:3.30.420.80\"[2-127]TRibosomal_S11
PTHR11759\"[7-128]TRibosomal_S11
PF00411\"[18-127]TRibosomal_S11
PS00054\"[96-118]TRIBOSOMAL_S11
noIPR
unintegrated
unintegrated
PTHR11759:SF3\"[7-128]TPTHR11759:SF3
SSF53137\"[12-128]TSSF53137


","BeTs to 17 clades of COG0100COG name: Ribosomal protein S11Functional Class: JThe phylogenetic pattern of COG0100 is amtkYqvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB001971 (Ribosomal protein S11) with a combined E-value of 7.4e-53. IPB001971A 19-66 IPB001971B 86-127","Residues 18-128 are 54% similar to a (PROTEIN RIBOSOMAL S11 30S 40S S14 CHLOROPLAST) protein domain (PD001010) which is seen in RS11_STRCO.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","Wed Mar 22 12:42:10 MST 2000","Wed Mar 22 12:42:10 MST 2000","Wed Mar 22 12:42:10 MST 2000","Wed Mar 28 11:06:52 MST 2001","Wed Mar 28 11:06:52 MST 2001","Wed Mar 28 11:06:52 MST 2001","Wed Mar 28 11:06:52 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 28 11:06:52 MST 2001","-73% similar to PDB:1P6G Real space refined coordinates of the 30S subunit fitted into the low resolution cryo-EM map of the EF-G.GTP state of E. coli 70S ribosome (E_value = 5.1E_28);-73% similar to PDB:1P87 Real space refined coordinates of the 30S subunit fitted into the low resolution cryo-EM map of the initiation-like state of E. coli 70S ribosome (E_value = 5.1E_28);-73% similar to PDB:1VS5 Crystal structure of the bacterial ribosome from escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution. this file contains the 30s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes and is described in remark 400. (E_value = 5.1E_28);-73% similar to PDB:1VS7 Crystal structure of the bacterial ribosome from escherichia coli in complex with the antibiotic kasugamyin at 3.5a resolution. this file contains the 30s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes and is described in remark 400. (E_value = 5.1E_28);-73% similar to PDB:2AVY Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution. This file contains the 30S subunit of one 70S ribosome. The entire crystal structure contains two 70S ribosomes and is described in remark 400. (E_value = 5.1E_28);","","","Residues 18 to 127 (E-value = 2.9e-56) place PG1669 in the Ribosomal_S11 family which is described as Ribosomal protein S11 (PF00411)","Wed Mar 28 11:06:52 MST 2001","34541516","","","","","","1","","","PG1913" "PG1670","2013411","2013034","378","ATGGCAATAAGAATAGTTGGCGTTGACTTGCCACAAAACAAAAGAGGTTTTATCGCTTTGACTTATATCTATGGTATCGGCCGCAGTAGTGCTATTACCATTTTGGATAAAGCCGGAGTAGACCGCGATATCAAGGTTAAAGATTGGTCGGATGACCAAGCTGCTGCCATTCGTGATGTTATCGGTGCCGGATACAAAGTAGAGGGAGATTTACGTTCTGAGGTGCAGTTGAATATCAAGCGTCTCATGGATATCGGCTGCTATCGTGGTATTCGCCATCGTATCGGTCTGCCTCTGCGTGGCCAGAGCACAAAGAACAATGCCCGCACACGTAAGGGCAAGAAGAAGACTGTTGCTAATAAGAAGAAAGCTACTAAA","11.20","16.17","13978","MAIRIVGVDLPQNKRGFIALTYIYGIGRSSAITILDKAGVDRDIKVKDWSDDQAAAIRDVIGAGYKVEGDLRSEVQLNIKRLMDIGCYRGIRHRIGLPLRGQSTKNNARTRKGKKKTVANKKKATK","30S ribosomal protein S13","The S13 protein is involved in the binding off-MET-tRNA. Tan et al., J. Bact. 175:7150 (1993).TIGR ID: PG1914","30S ribosomal protein S13","Cytoplasm, Extracellular","Numerous significant hits to ribosomal protein S13 in gapped BLAST; e.g. residues 4-111 are 58% similar to gb|AAD36543.1|AE001798_8 ribosomal protein S13 of Thermotoga maritima, residues 4-111 are 62% similar to gb|AAD40607.1|AF115283_26 ribosomal protein S13 of Leptospira interrogans, residues 4-111 are 62% similar to emb|CAC30915.1| 30S ribosomal protein S13 of Mycobacterium leprae.","
InterPro
IPR001892
Family
Ribosomal protein S13
PD001363\"[45-111]TRibosomal_S13
PTHR10871:SF1\"[1-123]TRibosomal_S13
PF00416\"[4-110]TRibosomal_S13
PS00646\"[89-102]TRIBOSOMAL_S13_1
PS50159\"[5-113]TRIBOSOMAL_S13_2
InterPro
IPR010979
Domain
Ribosomal protein S13-like, H2TH
SSF46946\"[3-122]TRibosomal_H2TH
noIPR
unintegrated
unintegrated
G3DSA:1.10.8.50\"[2-73]TG3DSA:1.10.8.50
G3DSA:4.10.910.10\"[74-123]TG3DSA:4.10.910.10
PTHR10871\"[1-123]TPTHR10871


","BeTs to 17 clades of COG0099COG name: Ribosomal protein S13Functional Class: JThe phylogenetic pattern of COG0099 is amtkYqvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB001892 (Ribosomal protein S13) with a combined E-value of 6.9e-50. IPB001892A 4-50 IPB001892B 78-110","Residues 4-110 are 62% similar to a (PROTEIN RIBOSOMAL S13 30S) protein domain (PD001363) which is seen in RS13_BACST.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","Wed Mar 22 12:45:42 MST 2000","Wed Mar 22 12:45:42 MST 2000","Wed Mar 22 12:45:42 MST 2000","Wed Mar 28 11:12:52 MST 2001","Wed Mar 28 11:12:52 MST 2001","Wed Mar 28 11:12:52 MST 2001","Wed Mar 28 11:12:52 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 28 11:12:52 MST 2001","-77% similar to PDB:1FJG STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH THE ANTIBIOTICS STREPTOMYCIN, SPECTINOMYCIN, AND PAROMOMYCIN (E_value = 6.2E_31);-77% similar to PDB:1GIX Crystal structure of the ribosome at 5.5 A resolution. This file, 1GIX, contains the 30S ribosome subunit, three tRNA, and mRNA molecules. 50S ribosome subunit is in the file 1GIY (E_value = 6.2E_31);-77% similar to PDB:1HNW STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH TETRACYCLINE (E_value = 6.2E_31);-77% similar to PDB:1HNX STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH PACTAMYCIN (E_value = 6.2E_31);-77% similar to PDB:1HNZ STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH HYGROMYCIN B (E_value = 6.2E_31);","","","Residues 4 to 110 (E-value = 1.3e-53) place PG1670 in the Ribosomal_S13 family which is described as Ribosomal protein S13/S18 (PF00416)","Wed Mar 28 11:12:52 MST 2001","34541517","","","","","","1","","","PG1914" "PG1671","2013560","2013447","114","ATGAAAGTAAGAGCATCAGTAAAGAAGCGTACTCCCGAATGCAAGATTGTCAGGAGAAAAGGACGCTTATATGTAATCAATAAGAAGAATCCCAAATACAAGCAGCGTCAGGGA","0.00","0.00","4569","MKVRASVKKRTPECKIVRRKGRLYVINKKNPKYKQRQG","","TIGR ID: PG1915","50S ribosomal protein L36","Cytoplasm, Extracellular","Many significant hits using gapped BLAST to ribosomal protein L36,with some to mitochondrial ribosomal protein L36 in eukaryotes. Residues 2-38 are 67% similar to gi4455779embCAB36868.1 (AL035536) mitochondrial ribosomal protein L36 in Schizosaccharomyces pombe, residues 2-37 are 47% similar to gi14318752gbAAH09166.1 in Mus musculus and gi13559400dbjBAB40859.1 in Homo sapiens. Prokaryotic similarities include residues 1-38 are 60% similar to gi12725123gbAAK06169.1(AE006436) 50S ribosomal protein L36 in Lactococcus lactis subsp. lactis.","
InterPro
IPR000473
Family
Ribosomal protein L36
PD002101\"[1-37]TRibosomal_L36
PTHR18804\"[1-38]TRibosomal_L36
PF00444\"[1-38]TRibosomal_L36
TIGR01022\"[1-38]TrpmJ_bact
noIPR
unintegrated
unintegrated
PTHR18804:SF3\"[1-38]TPTHR18804:SF3
SSF57840\"[1-38]TSSF57840


","BeTs to 13 clades of COG0257COG name: Ribosomal protein L36Functional Class: JThe phylogenetic pattern of COG0593 is ----yqvcebrhujgpolinx Number of proteins in this genome belonging to this COG is 1","","","Thu Jul 5 14:16:55 MDT 2001","Thu Jul 5 14:16:55 MDT 2001","Thu Jul 5 14:16:55 MDT 2001","Thu Jul 5 14:16:55 MDT 2001","Thu Jul 5 14:17:47 MDT 2001","Thu Jul 5 14:16:55 MDT 2001","Thu Jul 5 14:16:55 MDT 2001","Thu Jul 5 14:17:47 MDT 2001","Thu Jul 5 14:17:47 MDT 2001","Thu Jul 5 14:16:55 MDT 2001","Thu Jul 5 15:20:42 MDT 2001","Thu Jul 5 14:16:55 MDT 2001","Tue Jul 13 13:57:00 2004","Thu Jul 5 14:22:28 MDT 2001","Thu Jul 5 14:16:55 MDT 2001","Thu Jul 5 14:16:55 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Thu Jul 5 14:22:28 MDT 2001","Thu Jul 5 14:16:55 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 1 to 38 (E-value = 4.7e-11) place PG1671 in the Ribosomal_L36 family which is described as Ribosomal protein L36 (PF00444)","Thu Jul 5 14:16:55 MDT 2001","34541518","","","","","","1","Thu Jul 5 14:16:55 MDT 2001","","PG1915" "PG1671.1","2013795","2013580","216","ATGTCTAAGCAGACAGCGATAGAGCAAGACGGAGTGATACTAGAAGCACTTTCGAATGCTATGTTCAAGGTTGAACTACAGAATGGTCATGTCATTACGGCTCATATCTCCGGAAAGATGAGGATGCATTATATCAAGATTCTGCCGGGAGATAAAGTCAAGGTCGAAATGTCTCCTTATGATTTGACAAAGGGGCGTATTTCTTTTAGGTATAAA","0.00","0.00","8177","MSKQTAIEQDGVILEALSNAMFKVELQNGHVITAHISGKMRMHYIKILPGDKVKVEMSPYDLTKGRISFRYK","","TIGR ID: PG1916","translation initiation factor IF-1","Cytoplasm","Numerous hits using gapped BLAST to translation initiation factors including residues 1-72 are 66-70% similar to gi|14248001|dbj|BAB58390.1| (AP003364) in S.aureus, gi|1044987|gb|AAB06822.1| (L47971) in Bacillus subtilis and gi|10172770|dbj|BAB03877.1| (AP001507) in B.halodurans.This sequence is similar to BT2705.","
InterPro
IPR003029
Domain
RNA binding S1
SM00316\"[3-72]TS1
InterPro
IPR004368
Family
Translation initiation factor IF-1
TIGR00008\"[3-71]TinfA
InterPro
IPR006196
Family
S1, IF1 type
PF01176\"[5-70]TeIF-1a
PS50832\"[1-72]TS1_IF1_TYPE
InterPro
IPR012340
Domain
Nucleic acid-binding, OB-fold
G3DSA:2.40.50.140\"[1-71]TOB_NA_bd_sub
noIPR
unintegrated
unintegrated
SSF50249\"[1-71]TNucleic_acid_OB


","BeTs to 15 clades of COG0361COG name: Translation initiation factor IF-1Functional Class: JThe phylogenetic pattern of COG0593 is amtkyqvcebrhujgpolinx Number of proteins in this genome belonging to this COG is 1","","","Thu Jul 5 15:29:22 MDT 2001","Thu Jul 5 15:29:22 MDT 2001","Thu Jul 5 15:29:22 MDT 2001","Thu Jul 5 15:29:22 MDT 2001","Thu Jul 5 15:30:32 MDT 2001","Thu Jul 5 15:29:22 MDT 2001","Thu Jul 5 15:29:22 MDT 2001","Thu Jul 5 15:30:32 MDT 2001","Thu Jul 5 15:30:32 MDT 2001","Thu Jul 5 15:29:22 MDT 2001","Thu Jul 5 15:46:42 MDT 2001","Wed Dec 17 11:57:46 2003","Wed Dec 17 11:57:46 2003","Thu Jul 5 15:35:11 MDT 2001","Thu Jul 5 15:29:22 MDT 2001","Thu Jul 5 15:29:22 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Thu Jul 5 15:35:11 MDT 2001","Thu Jul 5 15:29:22 MDT 2001","-83% similar to PDB:1AH9 THE STRUCTURE OF THE TRANSLATIONAL INITIATION FACTOR IF1 FROM ESCHERICHIA COLI, NMR, 19 STRUCTURES (E_value = 2.3E_22);-79% similar to PDB:1HR0 CRYSTAL STRUCTURE OF INITIATION FACTOR IF1 BOUND TO THE 30S RIBOSOMAL SUBUNIT (E_value = 5.8E_18);-79% similar to PDB:1ZO1 IF2, IF1, and tRNA fitted to cryo-EM data OF E. COLI 70S initiation complex (E_value = 5.8E_18);","","","Residues 2 to 72 (E-value = 1.2e-09) place PG1671.1 in the S1 family which is described as S1 RNA binding domain (PF00575)","Thu Jul 5 15:29:22 MDT 2001","34541519","","","","","","1","Thu Jul 5 15:29:22 MDT 2001","","PG1916" "PG1672","2014583","2013801","783","ATGATTTACCTAAAGACAGATGAAGAAATCGCGCTGATGCGCGAAGCAAATCAGTTGGTTGGAAAGACTCTGGCCGAAGTTGCAAAAAATATTCGGCCGGGTGTTTCGACCTTGATGCTTGATAAGGTCGCAGAGGAATTTATTCGTGACCATGGAGCTGAGCCGGCTTTCCTTGGTTATGGTGGTTTCCCCAATAGTATTTGCGTATCGGTCAATGAGAATGTGGTTCATGGTATCCCTTCTGCTAAAGCTATCATCAAAGAAGGCGATATTGTATCAGTCGACTGCGGTACATCCTTGAATGGATTTACAGGAGATTCTGCCTATACGTTTGCTGTAGGAGAAGTTGCTCCGGAAGTAATTCGACTATTGAAAACGACGAAGGAGTCGTTGTACGAAGGAATTGCTGTTGCCATAGAAGGCTATCGAATAGGGGATATCGGCAGTGCAGTACAGAAGTACTGCGAAAGTCGTGGATACTCTGTCGTTCGAGAGTTGGTCGGACATGGAATCGGTCGGCAGATGCATGAATCGCCGGAGGTGCCAAATTATGGACGACCGGGTACAGGGCCTTTGCTGAAAAATGGCATGTGTATCTGTATTGAGCCCATGATCAATCTTGGAAGTAAGAATGTAGTTACAGAAAGAGATGGCTGGACCATACGTACAAAAGATCGTAAACCTTCGGCCCACTTCGAGCATTGTATCGCAATCCAAGGGGGGAGAGCTCAGATCTTATCCTCTTTTGATTTTATTCATGACGTTTTAGGTGATAAAGAATTT","5.70","-5.59","28330","MIYLKTDEEIALMREANQLVGKTLAEVAKNIRPGVSTLMLDKVAEEFIRDHGAEPAFLGYGGFPNSICVSVNENVVHGIPSAKAIIKEGDIVSVDCGTSLNGFTGDSAYTFAVGEVAPEVIRLLKTTKESLYEGIAVAIEGYRIGDIGSAVQKYCESRGYSVVRELVGHGIGRQMHESPEVPNYGRPGTGPLLKNGMCICIEPMINLGSKNVVTERDGWTIRTKDRKPSAHFEHCIAIQGGRAQILSSFDFIHDVLGDKEF","2014585 2013800","Methionine aminopeptidase is responsible for the removal of the amino-terminal methionine from nascent eukaryotic cytosolic and prokaryotic cytoplasmic proteins hen the penultimate amino acid is small and uncharged. All MAPs studied to date are monomeric proteins that require cobalt ions for activity. Map appears to be a monomer and belongs to the M24A peptidase family, also known as the MAP family 1.TIGR ID: PG1917","methionine aminopeptidase","Cytoplasm","Numerous significant hits to methionine aminopeptidases from, e.g., Bacillus halodurans (gi: 4512426), Bacillus subtilis (gi: 113739), Streptomyces coelicolor (gi: 7480276), Escherichia coli (gi: 113740), among others.This protein is similar to CT851, a predicted methionine aminopeptidase from Chlamydia trachomatis.","
InterPro
IPR000994
Domain
Peptidase M24, catalytic core
G3DSA:3.90.230.10\"[1-250]TPeptidase_M24_cat_core
PTHR10804\"[54-238]TPeptidase_M24_cat_core
PF00557\"[11-248]TPeptidase_M24
InterPro
IPR001714
Family
Peptidase M24, methionine aminopeptidase
PR00599\"[67-80]T\"[90-106]T\"[160-172]T\"[191-203]TMAPEPTIDASE
InterPro
IPR002467
Family
Peptidase M24A, methionine aminopeptidase, subfamily 1
PTHR10804:SF13\"[54-238]TPept_M24A_MAP1
TIGR00500\"[2-249]Tmet_pdase_I
noIPR
unintegrated
unintegrated
SSF55920\"[1-249]TSSF55920


","BeTs to 17 clades of COG0024COG name: Methionine aminopeptidaseFunctional Class: JThe phylogenetic pattern of COG0024 is amtkYqvCeBRhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB002467 (Methionine aminopeptidase, subfamily 1) with a combined E-value of 3.7e-79. IPB002467A 31-44 IPB002467B 59-80 IPB002467C 86-114 IPB002467D 147-184 IPB002467E 193-235***** IPB001131 (Proline dipeptidase) with a combined E-value of 7.2e-11. IPB001131A 67-110 IPB001131B 165-177 IPB001131C 193-207***** IPB002468 (Methionine aminopeptidase, subfamily 2) with a combined E-value of 1.6e-09. IPB002468A 64-82 IPB002468B 82-125 IPB002468C 161-179","Residues 1-177 are 52% similar to a (AMINOPEPTIDASE HYDROLASE PROTEIN METHIONINE PEPTIDASE) protein domain (PD000555) which is seen in Q9Z9J4_BBBBB.Residues 181-247 are 53% similar to a (AMINOPEPTIDASE METHIONINE MAP HYDROLASE COBALT PEPTIDASE) protein domain (PD102788) which is seen in Q9Z9J4_BBBBB.","","Thu Jun 14 12:23:46 MDT 2001","","Thu Jun 14 12:23:46 MDT 2001","Thu Jun 14 12:23:46 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:23:46 MDT 2001","Thu Jun 14 12:23:46 MDT 2001","","Mon Jun 25 16:28:55 MDT 2001","Thu Mar 30 17:04:18 MST 2000","Mon Apr 10 14:28:34 MDT 2000","Wed May 23 15:50:52 MDT 2001","Mon Jun 25 16:28:55 MDT 2001","Mon Jun 25 16:28:55 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1672 is similar to PG0795, a probable XAA-PRO aminopeptidase(E value 6e-10).","Tue Jun 5 11:46:48 MDT 2001","Wed May 23 15:50:52 MDT 2001","-62% similar to PDB:1O0X Crystal structure of Methionine aminopeptidase (TM1478) from Thermotoga maritima at 1.90 A resolution (E_value = 1.6E_58);-63% similar to PDB:1MAT STRUCTURE OF THE COBALT-DEPENDENT METHIONINE AMINOPEPTIDASE FROM ESCHERICHIA COLI: A NEW TYPE OF PROTEOLYTIC ENZYME (E_value = 1.2E_55);-63% similar to PDB:1XNZ Crystal Structure of Mn(II) form of E. coli. Methionine Aminopeptidase in complex with 5-(2-chlorophenyl)furan-2-carboxylic acid (E_value = 1.2E_55);-63% similar to PDB:2BB7 Mn Form Of E. coli Methionine Aminopeptidase In Complex With a quinolinyl sulfonamide inhibitor (E_value = 1.2E_55);-63% similar to PDB:2EVC Crystal structure of E. Coli. methionine amino peptidase in complex with 5-(2-(trifluoromethyl)phenyl)furan-2-carboxylic acid (E_value = 1.2E_55);","","","Residues 164 to 237 (E-value = 8.6e-21) place PG1672 in the Peptidase_M24 family which is described as metallopeptidase family M24 (PF00557)","Mon Jun 25 16:28:55 MDT 2001","34541520","","","Suh JW, Boylan SA, Oh SH, Price C. Genetic and transcriptional organization of the Bacillus subtilis spc-alpha region. Gene 169(1):17-23. PubMed: . Chang, S.-Y., E.C. McGary, S. Chang. 1989. Methionine aminopeptidase gene of Escherichia coli is essential for cell growth. J.Bacteriol. 171:4071-4072. PubMed: .Ben-Bassat, A., K. Bauer, S.-Y. Chang, K. Myambo, A. Boosman, S. Chang. 1987. Processing of the initiation methionine from proteins: properties of the Escherichia coli methionine aminopeptidase and its gene structure. J.Bacteriol. 169:751-757. PubMed: .","","Mon Apr 10 14:28:34 MDT 2000","1","","","PG1917" "PG1673","2015923","2014586","1338","ATGCGTGCGGTAGAAACAATCAAGAATATATGGAAGATTGAGGATTTGCGTCAACGCATTCTCACGACCATATTGTTCGTCGTCGTTTATCGCTTGGGTTCATTTGTCGTGATCCCCGGTATTGACCCCGCATCGTTGTCAGCACTCAAAGACCAGACTGCTGGAGGACTGATGGCTCTCTTGGATATGTTTTCCGGGGGGGCTTTCTCCCATGCATCTATTTTTGCTTTGGGTATTATGCCTTATATCTCTGCTTCGATTGTTATGCAGTTGGCAGCGATTGCTGTACCTGCAATGCAAAAGTTGCAGCGAGAAGGTGAGAGTGGGCGTATGAAGATCAATCAGTGGACTCGTTATCTGACTGTTGCTATTTTGATTTTACAGTCTCTTACCTATTTGGTGAACTTGCGAGTGCAAATGCAGTCTGTAGGAGCATCGATGCCCGGTGGCCTTTGGTTCCAGATAGTTGCGGTTGCTATTCTTACCGGTGGTAGTATGTTTGTTCTGTGGTTAGGAGAGCGTATTACAGACAAGGGTATCGGTAATGGTATTTCGTTGATCATTCTCATCGGTATTATTGCTCGTTTACCCCATGCATTTGTAGCTGAGTTCACATCTCGCACAACGAGTGCTGTTGGAGGTTTGGTTGCTTTTCTTGCTGAGATTGTATTCCTTCTTTTTGTCATAGCAGGTGCAATCCTTTTGGTACAAGGAACAAGAAAAGTACCTGTGCAATATGCGAAGCGGGTTGTCGGTAATAAGCAGTATGGGGGAGCACGCCAATATATCCCCTTGAAGGTAAATGCTGCCAATGTGATGCCTATCATCTTTGCTCAGGCGCTGATGTTCATTCCGATCTCTATTTTGGGATTCGCCAATGTAGATCAGTCTTCGGGGTTTCTGAGTGCTATGTCTAACAACACAAGTGTTTGGTATAATCTTGTATTTGCTATTTTGATCATTCTTTTTACGTATTTCTATACGGCGATTACGATCAATCCTAAGCAGATGGCCGATGACCTGAAGAGGAACAACGGTTTTATTCCCGGTATTAAGCCCGGAAAACAAACGAAAGATTATATTGATGCGATAATGGACCGGATAACGCTTCCTGGAGCATTGTTTTTGGCTATAGTTGCCATCCTGCCTGCTTTTGCGGAGATGTTCGGAGTTAGTTCAGCTTTTGCGCAATTCTTCGGAGGAACTTCTCTGCTGATTTTGGTGGGAGTTGTTTTGGATACGTTGCAACAGATCGAAAGCCATCTCTTGATGAGACATTACGATGGCTTGTTGAAGAGCGGGCGTATTAAAGGTAGAGTTGGCTCTGTTTCCGCATAT","10.70","14.96","48441","MRAVETIKNIWKIEDLRQRILTTILFVVVYRLGSFVVIPGIDPASLSALKDQTAGGLMALLDMFSGGAFSHASIFALGIMPYISASIVMQLAAIAVPAMQKLQREGESGRMKINQWTRYLTVAILILQSLTYLVNLRVQMQSVGASMPGGLWFQIVAVAILTGGSMFVLWLGERITDKGIGNGISLIILIGIIARLPHAFVAEFTSRTTSAVGGLVAFLAEIVFLLFVIAGAILLVQGTRKVPVQYAKRVVGNKQYGGARQYIPLKVNAANVMPIIFAQALMFIPISILGFANVDQSSGFLSAMSNNTSVWYNLVFAILIILFTYFYTAITINPKQMADDLKRNNGFIPGIKPGKQTKDYIDAIMDRITLPGALFLAIVAILPAFAEMFGVSSAFAQFFGGTSLLILVGVVLDTLQQIESHLLMRHYDGLLKSGRIKGRVGSVSAY","protein translocase SecY subunit","SecY is one of seven prokaryotic secretory proteinsthat facilitate protein translocation across theplasma membrane; it is an integral membrane protein.This protein has been previously sequenced inserovar L2. From Prosite PDOC00612: The eubacterial secY protein plays an important rolein protein export. It interacts with the signalsequences of secretory proteins as well as with twoother components of the protein translocationsystem: secA and secE. SecY is an integral plasmamembrane protein of 419 to 492 amino acid residuesthat apparently contains ten transmembrane segments.Such a structure probably confers to secY a'translocator' function, providing a channel forperiplasmic and outer-membrane precursor proteins.TIGR ID: PG1918","preprotein translocase SecY","Inner membrane, Cytoplasm","Numerous significant hits to translocase proteins in gapped BLAST; e.g. residues 6-439 are 41% similar to gb|AAD40603.1|AF115283_22 preprotein translocase SecY of Leptospira interrogans, residues 11-432 are 40% similar to emb|CAA65158.1| membrane translocase of Streptomyces galbus, residues 5-432 are 37% similar to gb|AAC06435.1| preprotein translocase SecY of Aquifex aeolicus. This sequence is similar to BT2707.","
InterPro
IPR001220
Domain
Legume lectin, beta domain
PS00307\"[408-414]?LECTIN_LEGUME_BETA
InterPro
IPR002208
Family
SecY protein
PR00303\"[20-38]T\"[72-92]T\"[113-136]T\"[151-176]T\"[177-200]T\"[270-289]T\"[310-332]T\"[365-383]T\"[400-418]TSECYTRNLCASE
PTHR10906\"[1-440]TSecY
PF00344\"[73-417]TSecY
TIGR00967\"[17-427]T3a0501s007
PS00755\"[73-92]TSECY_1
PS00756\"[170-187]TSECY_2
noIPR
unintegrated
unintegrated
PTHR10906:SF2\"[1-440]TPTHR10906:SF2
SSF103491\"[3-423]TSSF103491


","BeTs to 15 clades of COG0201COG name: Preprotein translocase subunit SecYFunctional Class: NThe phylogenetic pattern of COG0201 is amtkYqvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB002208 (SecY protein) with a combined E-value of 1.1e-117. IPB002208A 19-41 IPB002208B 64-92 IPB002208C 104-128 IPB002208D 164-192 IPB002208E 262-281 IPB002208F 315-369 IPB002208G 400-418","Residues 15-178 are 46% similar to a (PROTEIN SUBUNIT TRANSPORT TRANSMEMBRANE) protein domain (PD001056) which is seen in SECY_ECOLI.Residues 333-425 are 52% similar to a (PREPROTEIN TRANSLOCASE SUBUNIT SECY) protein domain (PD001749) which is seen in Q9Z7S5_BBBBB.Residues 194-332 are 39% similar to a (PREPROTEIN TRANSLOCASE SUBUNIT SECY) protein domain (PD001699) which is seen in O83238_TREPA.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","Wed Mar 22 12:57:01 MST 2000","Fri Dec 19 09:41:29 2003","Tue Apr 17 17:17:08 MDT 2001","Fri Dec 19 09:41:29 2003","Wed Mar 28 11:39:07 MST 2001","Wed Mar 28 11:39:07 MST 2001","Wed Mar 28 11:39:07 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 28 11:39:07 MST 2001","-56% similar to PDB:2AKH Normal mode-based flexible fitted coordinates of a non-translocating SecYEG protein-conducting channel into the cryo-EM map of a SecYEG-nascent chain-70S ribosome complex from E. coli (E_value = 2.3E_64);-56% similar to PDB:2AKI Normal mode-based flexible fitted coordinates of a translocating SecYEG protein-conducting channel into the cryo-EM map of a SecYEG-nascent chain-70S ribosome complex from E. coli (E_value = 2.3E_64);","","","Residues 73 to 417 (E-value = 1.2e-136) place PG1673 in the SecY family which is described as eubacterial secY protein (PF00344)","Tue Apr 17 17:18:07 MDT 2001","34541521","","","","","","1","","","PG1918" "PG1673.1","2016374","2015931","444","ATGAATTTGTCTAGTTTAAAGCCTGCAGAGGGGGCGGTCAAGTCTCGCAAGAGAATTGGTCGCGGTCCGGGTTCAGGCTTGGGAGGAACCTCTACGAGAGGACATAAAGGAGCGAAATCACGTTCTGGCTATTCTAAGAAGATCGGTTTTGAAGGAGGTCAAATGCCTATTCAACGCCGCTTGCCTAAGTTTGGCTTTAAGAATATAAATCGAGTAGAATACAAGCCTATCAATCTGTCTGTGCTTCAAACTTTGTCTGAGGCTAACTCTCTGACCAAGATTTCGGTAGAGGACTTGATTGCTGCAGGGCTTGTTTCTCGAAACTCTTTAGTTAAGATATTGGCTAATGGTACAGTGACTACGGCTTTGACAGTAGAAGCTCATGCTTTCTCAAAGACAGCAGAAGAAGCTATTGTAAGAGCAGGAGGATCTGTTGTAAAACTA","","","15574","MNLSSLKPAEGAVKSRKRIGRGPGSGLGGTSTRGHKGAKSRSGYSKKIGFEGGQMPIQRRLPKFGFKNINRVEYKPINLSVLQTLSEANSLTKISVEDLIAAGLVSRNSLVKILANGTVTTALTVEAHAFSKTAEEAIVRAGGSVVKL","","TIGR ID: PG1919","50S ribosomal protein L15","Cytoplasm, Extracellular","Residues 1-144 have 44% similarity to L47971, B. subtilis ribosomal protein L15.Residues 1-144 have 44% similarity to U96620, S. aureus ribosomal protein L15.Residues 1-143 have 44% similarity to AE001798, T. maritima ribosomal protein L15. ","
InterPro
IPR001196
Family
Ribosomal protein L15
PF00256\"[112-143]TL15
PF01305\"[1-105]TRibosomal_L15
PS00475\"[112-142]TRIBOSOMAL_L15
InterPro
IPR005749
Family
Ribosomal protein L15, bacterial form
PTHR12934\"[40-148]TRibosom_L15_bac
TIGR01071\"[2-146]TrplO_bact
noIPR
unintegrated
unintegrated
G3DSA:3.100.10.10\"[66-146]TG3DSA:3.100.10.10
SSF52080\"[14-148]TSSF52080


","BeTs to 16 clades of COG0200COG name: Ribosomal protein L15Functional Class: JThe phylogenetic pattern of COG0200 is amtkYqvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB001196 (Ribosomal protein L15) with a combined E-value of 5.8e-14. IPB001196A 17-41 IPB001196B 112-122 IPB001196C 134-143","Residues 1-107 are 42% similar to a (RIBOSOMAL PROTEIN L15 50S) protein domain (PD003120) which is seen in RL15_BACSU.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Tue Apr 17 17:20:47 MDT 2001","Tue Mar 6 18:14:16 MST 2001","Tue Apr 17 17:20:47 MDT 2001","Tue Mar 6 18:14:16 MST 2001","Tue Mar 6 18:14:16 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 6 18:14:59 MST 2001","-51% similar to PDB:1P85 Real space refined coordinates of the 50S subunit fitted into the low resolution cryo-EM map of the EF-G.GTP state of E. coli 70S ribosome (E_value = 8.6E_18);-51% similar to PDB:1P86 Real space refined coordinates of the 50S subunit fitted into the low resolution cryo-EM map of the initiation-like state of E. coli 70S ribosome (E_value = 8.6E_18);-51% similar to PDB:1VS6 Crystal structure of the bacterial ribosome from escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution. this file contains the 50s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes and is described in remark 400. (E_value = 8.6E_18);-51% similar to PDB:1VS8 Crystal structure of the bacterial ribosome from escherichia coli in complex with the antibiotic kasugamyin at 3.5a resolution. this file contains the 30s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes and is described in remark 400. (E_value = 8.6E_18);-51% similar to PDB:2AW4 Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution. This file contains the 50S subunit of one 70S ribosome. The entire crystal structure contains two 70S ribosomes and is described in remark 400. (E_value = 8.6E_18);","","","Residues 1 to 105 (E-value = 4.1e-49) place PG1673.1 in the Ribosomal_L15 family which is described as Ribosomal protein L15 amino terminal region (PF01305)Residues 112 to 143 (E-value = 6.1e-11) place PG1673.1 in the L15 family which is described as Ribosomal protein L15 (PF00256)","Tue Apr 17 17:20:47 MDT 2001","34541522","","","","","","1","","","PG1919" "PG1673.2","2016576","2016403","174","ATGGCTAAAATTAAGATACAACAAGTTCGTAGTAGAATTAGGTGTCCTAAAGATCAGAAGAGAACTTTAGATGCCCTTGGATTGAGAAAATTGAATCAAATTGTCGAGCATGAAGCTACTCCCAGTATATTGGGGATGGTGAATAAGGTGAGACACCTGGTTTTGATCGTTGAA","0.00","0.00","6669","MAKIKIQQVRSRIRCPKDQKRTLDALGLRKLNQIVEHEATPSILGMVNKVRHLVLIVE","","TIGR ID PG1920","50S ribosomal protein L30","Cytoplasm","Numerous hits using gapped BLAST to ribosomal protein L30 including residues 1-58 are 48-51% similar to gi|12725133|gb|AAK06178.1|AE006437_8 (AE006437) in Lactococcus lactis, gi|9657165|gb|AAF95719.1| (AE004326) in Vibrio cholerae and gi|1044982|gb|AAB06817.1| (L47971) in Bacillus subtilis.","
InterPro
IPR000517
Domain
Ribosomal protein L30
PF00327\"[2-54]TRibosomal_L30
PS00634\"[22-54]TRIBOSOMAL_L30
InterPro
IPR005996
Family
Ribosomal protein L30, bacterial
TIGR01308\"[4-58]TrpmD_bact
noIPR
unintegrated
unintegrated
G3DSA:3.30.1390.20\"[1-56]TG3DSA:3.30.1390.20
SSF55129\"[1-58]TRibosomal_L30


","BeTs to 12 clades of COG1841COG name: Ribosomal protein L30/L7EFunctional Class: JThe phylogenetic pattern of COG0593 is amtkYqv-ebrh----ol--x Number of proteins in this genome belonging to this COG is 1","","","Thu Jul 5 15:55:12 MDT 2001","Thu Jul 5 15:55:12 MDT 2001","Thu Jul 5 15:55:12 MDT 2001","Thu Jul 5 15:55:12 MDT 2001","Thu Jul 5 15:56:28 MDT 2001","Thu Jul 5 15:55:12 MDT 2001","Thu Jul 5 15:55:12 MDT 2001","Thu Jul 5 15:56:28 MDT 2001","Thu Jul 5 15:56:28 MDT 2001","Thu Jul 5 15:55:12 MDT 2001","Thu Jul 5 15:55:12 MDT 2001","Thu Jul 5 15:55:12 MDT 2001","Thu Jul 5 16:08:25 MDT 2001","Thu Jul 5 16:01:26 MDT 2001","Thu Jul 5 15:55:12 MDT 2001","Thu Jul 5 15:55:12 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Thu Jul 5 16:01:26 MDT 2001","Thu Jul 5 15:55:12 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 2 to 54 (E-value = 1.7e-13) place PG1673.2 in the Ribosomal_L30 family which is described as Ribosomal protein L30p/L7e (PF00327)","Thu Jul 5 15:55:12 MDT 2001","34541523","","","","","","1","Thu Jul 5 15:55:12 MDT 2001","","PG1920" "PG1674","2017114","2016599","516","ATGGCTATTGTATATAATCGAGTAAAATCGACAAACGATCTGGAATTGAAGGATCGCTTGGTTGCAATCAATCGTGTGACCAAGGTTACAAAAGGTGGGCGCACCTTTACTTTTGCTGCTATTGTTGTCGTAGGTAATGAAGACGGTGTTATCGGCTGGGGCCTTGGAAAAGCCGGTGAAGTGCCTGCTGCCATAGCAAAAGGGGTTGAGGCTGCTAAAAAGAATTTAATCCGGGTTCCGGTGCATAACGGTACAATCCCTCACGAACAAGCTGCTTCTTATGGTGGAGCCAGTGTGTTTTTGAAGCCCGCGACCACCGGTACCGGAGTAAAGGCTGGGGGTGCCATGCGTGCTGTCTTGGATAGCGTTGGCGTTACTGATGTCCTTGCAAAAAGCAAAGGCTCTTCTAATCCTCACAATCTTGTAAAAGCAACGATTCAAGCCCTTGCAGAAATGCGTAGCCCTTTGATGGTTGCACAGAACCGAGGTATTTCTGTTGAAAAAGTTTTCAAAGGT","10.90","11.71","17829","MAIVYNRVKSTNDLELKDRLVAINRVTKVTKGGRTFTFAAIVVVGNEDGVIGWGLGKAGEVPAAIAKGVEAAKKNLIRVPVHNGTIPHEQAASYGGASVFLKPATTGTGVKAGGAMRAVLDSVGVTDVLAKSKGSSNPHNLVKATIQALAEMRSPLMVAQNRGISVEKVFKG","2017113 2016598","The 5S protein assists in the assembly and functionof the 30S unit.TIGR ID: PG1921","30S ribosomal protein S5","Cytoplasm","Numerous significant hits to ribosomal protein S5 in gapped BLAST; e.g. residues 12-169 are 52% similar to dbj|BAB03870.1| 30S ribosomal protein S5 of Bacillus halodurans, residues 13-171 are 42% similar to gb|AAC07536.1| ribosomal protein S05 of Aquifex aeolicus, residues 18-166 are 50% similar to gb|AAF83979.1|AE003951_4 30S ribosomal protein S5 of Xylella fastidiosa.","
InterPro
IPR000851
Family
Ribosomal protein S5
PTHR13718\"[15-170]TRibosomal_S5
InterPro
IPR005324
Domain
Ribosomal protein S5, C-terminal
PF03719\"[93-163]TRibosomal_S5_C
InterPro
IPR005712
Family
Ribosomal protein S5, bacterial and chloroplast
TIGR01021\"[13-168]TrpsE_bact
InterPro
IPR013810
Domain
Ribosomal protein S5, N-terminal
PF00333\"[15-81]TRibosomal_S5
PS00585\"[33-65]TRIBOSOMAL_S5
PS50881\"[16-79]TS5_DSRBD
InterPro
IPR014720
Domain
Double-stranded RNA-binding-like
G3DSA:3.30.160.20\"[6-78]TdsRNA-bd-like
InterPro
IPR014721
Domain
Ribosomal protein S5 domain 2-type fold
G3DSA:3.30.230.10\"[79-155]TRibosomal_S5_D2-type_fold
noIPR
unintegrated
unintegrated
SSF54211\"[84-164]TSSF54211
SSF54768\"[15-83]TSSF54768


","BeTs to 17 clades of COG0098COG name: Ribosomal protein S5Functional Class: JThe phylogenetic pattern of COG0098 is amtkYqvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB000851 (Ribosomal protein S5) with a combined E-value of 8.3e-46. IPB000851A 18-69 IPB000851B 85-131","Residues 17-52 are 63% similar to a (PROTEIN RIBOSOMAL 30S S5) protein domain (PD001336) which is seen in RS5_MYCCA.Residues 53-129 are 50% similar to a (PROTEIN RIBOSOMAL 30S S5 S2 40S S4 REPEAT S5P LLREP3) protein domain (PD001364) which is seen in Q9Z9J7_BBBBB.Residues 21-170 are 30% similar to a (MITOCHONDRIAL 40S RIBOSOMAL PROTEIN) protein domain (PD024432) which is seen in RT05_YEAST.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Wed Mar 22 14:04:25 MST 2000","Wed Mar 22 14:04:25 MST 2000","Wed Mar 28 11:48:04 MST 2001","Wed Mar 28 11:48:04 MST 2001","Wed Mar 28 11:48:04 MST 2001","Wed Mar 28 11:48:04 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 28 11:48:04 MST 2001","-69% similar to PDB:1P6G Real space refined coordinates of the 30S subunit fitted into the low resolution cryo-EM map of the EF-G.GTP state of E. coli 70S ribosome (E_value = 5.0E_37);-69% similar to PDB:1P87 Real space refined coordinates of the 30S subunit fitted into the low resolution cryo-EM map of the initiation-like state of E. coli 70S ribosome (E_value = 5.0E_37);-69% similar to PDB:1VS5 Crystal structure of the bacterial ribosome from escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution. this file contains the 30s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes and is described in remark 400. (E_value = 5.0E_37);-69% similar to PDB:1VS7 Crystal structure of the bacterial ribosome from escherichia coli in complex with the antibiotic kasugamyin at 3.5a resolution. this file contains the 30s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes and is described in remark 400. (E_value = 5.0E_37);-69% similar to PDB:2AVY Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution. This file contains the 30S subunit of one 70S ribosome. The entire crystal structure contains two 70S ribosomes and is described in remark 400. (E_value = 5.0E_37);","","","Residues 15 to 81 (E-value = 3.3e-32) place PG1674 in the Ribosomal_S5 family which is described as Ribosomal protein S5, N-terminal domain (PF00333)Residues 90 to 163 (E-value = 4e-22) place PG1674 in the Ribosomal_S5_C family which is described as Ribosomal protein S5, C-terminal domain (PF03719)","Wed Mar 28 11:48:04 MST 2001","34541524","","","","","","1","","","PG1921" "PG1675","2017464","2017123","342","ATGGTAACGAAAGAACAAAGAAGACAAAAAATAAAGGCTCGTGTACGTGGCAAGATTAGCGGAACACAGGAAAAACCACGCTTGACCGTTTTCCGCAGCAATAAGCAGATATATGCGCAATTGATTGATGATATTGCGGGTAGAACCCTTGCTTCTGCATCATCTTTGAAATTAGAGATGACAGGATCTAAAAAGGAAATTGCGGCCAAGGTTGGTGACGAAATAGCAAAAGCAGCCACTGAGGCAGGTATATCCACTGTAGTGTTTGATCGTAACGGCTATCTTTTCCATGGCCGTATTAAGGAATTGGCTGATGCAGCCCGTAAAGGCGGCCTCAAATTT","11.10","12.23","12519","MVTKEQRRQKIKARVRGKISGTQEKPRLTVFRSNKQIYAQLIDDIAGRTLASASSLKLEMTGSKKEIAAKVGDEIAKAATEAGISTVVFDRNGYLFHGRIKELADAARKGGLKF","50S ribosomal protein L18","TIGR ID: PG1922","50S ribosomal protein L18","Cytoplasm","This sequence is similar to CT513 of Chlamydia trachomatis.","
InterPro
IPR004389
Family
Ribosomal protein L18
TIGR00060\"[4-114]TL18_bact
InterPro
IPR005484
Family
Ribosomal protein L18P/L5E
PD001394\"[28-114]TRibosomal_L18p
PF00861\"[3-114]TRibosomal_L18p
noIPR
unintegrated
unintegrated
G3DSA:3.30.420.100\"[25-114]TG3DSA:3.30.420.100
SSF53137\"[2-114]TSSF53137


","BeTs to 13 clades of COG0256COG name: Ribosomal protein L18Functional Class:  JThe phylogenetic pattern of COG0256 is amtkyqvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** DM01191 (ESCHERICHIA COLI RIBOSOMAL PROTEIN L18) with a combined E-value of 1.6e-48. DM01191A 16-57 DM01191B 68-114","Residues 19-114 are 64% similar to a (PROTEIN RIBOSOMAL RRNA-BINDING 50S L18 60S L5 L18P) protein domain (PD001394) which is seen in RL18_BACSU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","Wed Mar 22 14:06:49 MST 2000","","Wed Mar 22 14:06:49 MST 2000","Wed Mar 22 14:09:25 MST 2000","Wed Mar 22 14:06:49 MST 2000","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","-70% similar to PDB:1OVY Solution Structure of Ribosomal Protein L18 from Bacillus stearothermophilus (E_value = 2.5E_29);-69% similar to PDB:1NKW Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans (E_value = 9.4E_24);-69% similar to PDB:1SM1 COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN (E_value = 9.4E_24);-70% similar to PDB:1NWX COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH ABT-773 (E_value = 1.6E_23);-70% similar to PDB:1NWY COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN (E_value = 1.6E_23);","","","Residues 3 to 114 (E-value = 3.6e-43) place PG1675 in the Ribosomal_L18p family which is described as Ribosomal L18p/L5e family (PF00861)","","34541525","","","","","","1","","","PG1922" "PG1676","2018034","2017486","549","ATGTCAAGAATTGGTAAGTTGCCCATCAGCATCCCCGCTGGTGTGACGGTATCTCACAAGGATGAAATCGTAACAGTAAAAGGTCCTAAGGGCGAATTGTCACAATACGTAGATCCTCGAATCACTGTTGTGATAGAAGGTGGTATGATCCATTTAGAGCGCAAGACCGATGACCGTATCGAACGCTCTTTGCATGGTCTCTATCGTTCCTTGATTAATAATATGGTGCAGGGTGTTTCTGCCGGTTTTAAGCGTGAACTCGAACTCGTTGGGGTAGGCTATAGAGCCTCTAATCAAGGGCAGCTCCTTGAGCTTTCCTTGGGTTTTACGCACAGCATTTTCATGCAGCTGCCCAAAGAGGTGACAGTTGAAACCAAGAGCGAGAGAAACAAAAACCCTTTGATTATCCTCGAAAGTGCTGACAAGCAGCTTCTTGGTCAAGTGTGTATGAAGATTCGATCATTCAGAAAACCTGAACCGTACAAAGGTAAGGGTGTCAAGTTTGTCGGTGAGCAAATTCGCAGGAAGTCTGGTAAATCTGCTGGAAAA","10.70","12.91","20339","MSRIGKLPISIPAGVTVSHKDEIVTVKGPKGELSQYVDPRITVVIEGGMIHLERKTDDRIERSLHGLYRSLINNMVQGVSAGFKRELELVGVGYRASNQGQLLELSLGFTHSIFMQLPKEVTVETKSERNKNPLIILESADKQLLGQVCMKIRSFRKPEPYKGKGVKFVGEQIRRKSGKSAGK","50S ribosomal protein L6","TIGR ID: PG1923","50S ribosomal protein L6","Cytoplasm","This sequence is similar to CT514 of Chlamydia trachomatis.","
InterPro
IPR000702
Family
Ribosomal protein L6
PD002236\"[87-179]TRibosomal_L6
PR00059\"[71-96]T\"[145-166]TRIBOSOMALL6
G3DSA:3.90.930.12\"[2-82]T\"[83-182]TRibosomal_L6
PTHR11655\"[2-183]TRibosomal_L6
PF00347\"[11-82]T\"[90-169]TRibosomal_L6
InterPro
IPR002358
Family
Ribosomal protein L6, signature 1
PS00525\"[158-166]TRIBOSOMAL_L6_1
noIPR
unintegrated
unintegrated
PTHR11655:SF6\"[2-183]TPTHR11655:SF6
SSF56053\"[8-82]T\"[83-175]TSSF56053


","BeTs to 17 clades of COG0097COG name: Ribosomal protein L6Functional Class:  JThe phylogenetic pattern of COG0097 is amtkYqvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB002358 (Ribosomal protein L6, signature 1) with a combined E-value of 1.1e-68. IPB002358A 2-27 IPB002358B 65-113 IPB002358C 139-179***** IPB002359 (Ribosomal protein L6, signature 2) with a combined E-value of 2.4e-12. IPB002359A 7-35 IPB002359B 59-98","Residues 27-79 are 49% similar to a (PROTEIN RIBOSOMAL L6 50S) protein domain (PD003414) which is seen in RL6_BACST.Residues 82-179 are 47% similar to a (PROTEIN RIBOSOMAL L6 50S) protein domain (PD002236) which is seen in RL6_ECOLI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","Wed Mar 22 14:10:40 MST 2000","","Wed Mar 22 14:10:40 MST 2000","Wed Mar 22 14:10:40 MST 2000","Wed Mar 22 14:10:40 MST 2000","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","-72% similar to PDB:1C04 IDENTIFICATION OF KNOWN PROTEIN AND RNA STRUCTURES IN A 5 A MAP OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI (E_value = 1.5E_45);-72% similar to PDB:1GIY CRYSTAL STRUCTURE OF THE RIBOSOME AT 5.5 A RESOLUTION. THIS FILE, 1GIY, CONTAINS THE 50S RIBOSOME SUBUNIT. THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES ARE IN THE FILE 1GIX (E_value = 1.5E_45);-72% similar to PDB:1ML5 Structure of the E. coli ribosomal termination complex with release factor 2 (E_value = 1.5E_45);-72% similar to PDB:1RL6 RIBOSOMAL PROTEIN L6 (E_value = 1.5E_45);-72% similar to PDB:1YL3 Crystal structure of 70S ribosome with thrS operator and tRNAs. Large subunit. The coordinates for the small subunit are in the pdb entry 1YL4. (E_value = 1.5E_45);","","","Residues 11 to 82 (E-value = 1e-21) place PG1676 in the Ribosomal_L6 family which is described as Ribosomal protein L6 (PF00347)Residues 90 to 169 (E-value = 1.2e-23) place PG1676 in the Ribosomal_L6 family which is described as Ribosomal protein L6 (PF00347)","","34541526","","","","","","1","","","PG1923" "PG1677","2018448","2018056","393","ATGACAGATCCTATTGCAGATTATTTGACGCGGTTGCGTAATGCAATTATGGCTGGCCATCGTGTGGTAAGTGTGCCGGCGTCAAATATTAAGAAAGAGATCACAAAGATCCTTTTCGACAAAGGGTATATCCTGAACTATAAGTTCGAGGAGAATGACTCTCAAGGCATAATAAAAGTTGCCTTAAAGTATGATTTGGCACATAAAGTAAATGCCATCAAGAAGTTGAAACGTGTGTCTCGTCCCGGCCTTCGAAAGTATGTGGGTTATCGTGATATGCCCCGCGTATTGAACGGCCTTGGTATTGCTATTGTTTCTACCCCACGAGGAGTGATGACTGATAAAGAAGCTCGTGAGTTGAAAGTTGGGGGAGAAGTATTGTGTTACGTTTAT","10.70","11.42","14781","MTDPIADYLTRLRNAIMAGHRVVSVPASNIKKEITKILFDKGYILNYKFEENDSQGIIKVALKYDLAHKVNAIKKLKRVSRPGLRKYVGYRDMPRVLNGLGIAIVSTPRGVMTDKEARELKVGGEVLCYVY","30S ribosomal protein S8","TIGR ID: PG1924","30S ribosomal protein S8","Cytoplasm","This sequence is similar to CT515 of Chlamydia trachomatis.","
InterPro
IPR000630
Family
Ribosomal protein S8
PD001098\"[9-131]TRibosomal_S8
PTHR11758\"[1-131]TRibosomal_S8
PF00410\"[3-131]TRibosomal_S8
PS00053\"[101-118]TRIBOSOMAL_S8
SSF56047\"[1-131]TRibosomal_S8
InterPro
IPR002110
Repeat
Ankyrin
PR01415\"[8-20]T\"[31-43]TANKYRIN
noIPR
unintegrated
unintegrated
G3DSA:3.30.1370.30\"[1-71]TG3DSA:3.30.1370.30
G3DSA:3.30.1490.10\"[74-131]TG3DSA:3.30.1490.10


","BeTs to 17 clades of COG0096COG name: Ribosomal protein S8Functional Class:  JThe phylogenetic pattern of COG0096 is amtkYqvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB000630 (Ribosomal protein S8) with a combined E-value of 4.6e-23. IPB000630 99-131","Residues 9-131 are 54% similar to a (PROTEIN RIBOSOMAL S8 30S RRNA-BINDING CHLOROPLAST 40S) protein domain (PD001098) which is seen in Q9Z9K0_BBBBB.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","Wed Mar 22 14:12:24 MST 2000","","Wed Mar 22 14:12:24 MST 2000","Wed Mar 22 14:12:24 MST 2000","Wed Mar 22 14:12:24 MST 2000","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","-75% similar to PDB:1SEI STRUCTURE OF 30S RIBOSOMAL PROTEIN S8 (E_value = 1.7E_34);-67% similar to PDB:1I94 CRYSTAL STRUCTURES OF THE SMALL RIBOSOMAL SUBUNIT WITH TETRACYCLINE, EDEINE AND IF3 (E_value = 8.8E_31);-67% similar to PDB:1I95 CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH EDEINE (E_value = 8.8E_31);-67% similar to PDB:1I96 CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH THE TRANSLATION INITIATION FACTOR IF3 (C-TERMINAL DOMAIN) (E_value = 8.8E_31);-67% similar to PDB:1I97 CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH TETRACYCLINE (E_value = 8.8E_31);","","","Residues 3 to 131 (E-value = 5.6e-60) place PG1677 in the Ribosomal_S8 family which is described as Ribosomal protein S8 (PF00410)","","34541527","","","","","","1","","","PG1924" "PG1678","2018768","2018502","267","ATGGCTAAAGAATCAATGAAAGCCCGCGAGGTGAAGCGTGCCAAGCTTGTGGCGAAATATGCTGCAAAGAGAGCGGCACTCAAGGCTGAAGGAAATTATGAAGCCTTGCAGTTGCTCCCTAAGAATGCTTCTCCTGTTCGTTTGCATAATCGTTGCTCGATGACTGGGCGTCCAAAGGGCTATATGCGCCAATTTGGTATTTCCCGTATTCAATTTCGTGAAATGGCTTCTGCCGGTCTTATCCCCGGCGTAAAAAAAGCGAGTTGG","11.60","15.17","9933","MAKESMKAREVKRAKLVAKYAAKRAALKAEGNYEALQLLPKNASPVRLHNRCSMTGRPKGYMRQFGISRIQFREMASAGLIPGVKKASW","2018767 2018501","In E. coli, the S14 protein appears to be involved with assemblyof 30S particles.TIGR ID: PG1925","30S ribosomal protein S14","Periplasm, Cytoplasm","This protein is similar to CT787, a predicted 30S ribosomal protein S14 from Chlamydia trachomatis.","
InterPro
IPR001209
Family
Ribosomal protein S14
PTHR19836\"[1-89]TRibosomal_S14
PF00253\"[34-88]TRibosomal_S14
PS00527\"[51-73]TRIBOSOMAL_S14
noIPR
unintegrated
unintegrated
G3DSA:4.10.830.10\"[29-89]TG3DSA:4.10.830.10
PTHR19836:SF1\"[1-89]TPTHR19836:SF1
SSF57716\"[30-89]TSSF57716


","BeTs to 14 clades of COG0199COG name: Ribosomal protein S14Functional Class: JThe phylogenetic pattern of COG0199 is amtkYqvceBRhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB001209 (Ribosomal protein S14) with a combined E-value of 2.7e-27. IPB001209 47-89","Residues 36-86 are 62% similar to a (PROTEIN RIBOSOMAL S14 30S CHLOROPLAST MITOCHONDRION) protein domain (PD001990) which is seen in O31587_BACSU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Thu Apr 6 16:14:55 MDT 2000","Wed Mar 29 15:24:28 MST 2000","Thu Apr 6 16:14:55 MDT 2000","Wed May 23 16:25:18 MDT 2001","Wed May 23 16:25:18 MDT 2001","Wed May 23 16:25:18 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Thu Apr 6 16:14:55 MDT 2000","Wed May 23 16:25:18 MDT 2001","-54% similar to PDB:1VS5 Crystal structure of the bacterial ribosome from escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution. this file contains the 30s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes and is described in remark 400. (E_value = 1.1E_14);-54% similar to PDB:1VS7 Crystal structure of the bacterial ribosome from escherichia coli in complex with the antibiotic kasugamyin at 3.5a resolution. this file contains the 30s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes and is described in remark 400. (E_value = 1.1E_14);-78% similar to PDB:1P6G Real space refined coordinates of the 30S subunit fitted into the low resolution cryo-EM map of the EF-G.GTP state of E. coli 70S ribosome (E_value = 1.4E_14);-78% similar to PDB:1P87 Real space refined coordinates of the 30S subunit fitted into the low resolution cryo-EM map of the initiation-like state of E. coli 70S ribosome (E_value = 1.4E_14);-78% similar to PDB:2AVY Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution. This file contains the 30S subunit of one 70S ribosome. The entire crystal structure contains two 70S ribosomes and is described in remark 400. (E_value = 1.4E_14);","","","Residues 1 to 89 (E-value = 1.3e-43) place PG1678 in the Ribosomal_S14 family which is described as Ribosomal protein S14p/S29e (PF00253)","Wed May 23 16:25:18 MDT 2001","34541528","","","Cerretti,D.P., Dean,D., Davis,G.R., Bedwell,D.M. and Nomura,M. 1983. The spc ribosomal protein operon of Escherichia coli: sequence and cotranscription of the ribosomal protein genes and a protein export gene. Nucleic Acids Res. 11 (9): 2599-2616. PubMed: 6222285.","","Wed Mar 29 15:24:28 MST 2000","1","","","PG1925" "PG1679","2019330","2018773","558","ATGAGTGCCACTGCCAATCTGAAGAAAGACTATCAGGAAAGAATCGTTCCTGCCCTGATGAAACAATTCGGTTATACGAGCGTGATGCAAGTCCCTGTGTTGAAGAAAATCGTGATCAACCAAGGTCTTGGTATGGCTACCGGTGACAAGAAGATTATCGATGTTGCAGTAAGCGAATTGACGGCTATTACCGGACAGAAAGCTGTACCGACGGTATCTAAGAAAGACATCTCAAACTTTAAGTTGAGAAAGAAGATGCCAATCGGTGTTATGGTTACTCTGCGTCGTGAGCAAATGTATGAGTTCTTGGAACGTCTGGTGCGCATCGCTTTGCCTCGAATCCGCGACTTTAAGGGTATCGAAAGCAAGCTTGATGGAAGAGGTAACTATACGTTGGGAATCAATGAACAAATCATTTTCCCCGAGATAAATATCGACGCGATTACGAAGATTCTCGGAATGAATATTACCTTTGTGACTTCGGCGCAATCCGATGAAGAAGGTTATGCCCTTCTGAAAGAATTCGGTTTACCGTTCAAGAACGCTAAAAAACAAAAT","10.60","10.00","20869","MSATANLKKDYQERIVPALMKQFGYTSVMQVPVLKKIVINQGLGMATGDKKIIDVAVSELTAITGQKAVPTVSKKDISNFKLRKKMPIGVMVTLRREQMYEFLERLVRIALPRIRDFKGIESKLDGRGNYTLGINEQIIFPEINIDAITKILGMNITFVTSAQSDEEGYALLKEFGLPFKNAKKQN","50S ribosomal protein L5","TIGR ID: PG1926","50S ribosomal protein L5","Cytoplasm","This sequence is similar to CT516 of Chlamydia trachomatis.","
InterPro
IPR002132
Family
Ribosomal protein L5
PTHR11994\"[4-185]TRibosomal_L5
PF00281\"[27-83]TRibosomal_L5
PF00673\"[87-180]TRibosomal_L5_C
InterPro
IPR003236
Family
Mitochondrial ribosomal protein L5
PD013434\"[11-180]TRibosomal_L5_mit
noIPR
unintegrated
unintegrated
G3DSA:3.30.1440.10\"[4-181]TG3DSA:3.30.1440.10
PTHR11994:SF4\"[4-185]TPTHR11994:SF4
SSF55282\"[3-181]TSSF55282


","BeTs to 17 clades of COG0094COG name: Ribosomal protein L5Functional Class:  JThe phylogenetic pattern of COG0094 is amtkYqvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB002132 (Ribosomal protein L5) with a combined E-value of 4.3e-49. IPB002132A 36-46 IPB002132B 60-105 IPB002132C 124-141 IPB002132D 145-159","Residues 30-179 are 58% similar to a (RIBOSOMAL PROTEIN RRNA-BINDING L5 50S 60S L11) protein domain (PD001076) which is seen in RK5_CYAPA.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","Wed Mar 22 14:13:52 MST 2000","","Wed Mar 22 14:13:52 MST 2000","Wed Mar 22 14:13:52 MST 2000","Wed Mar 22 14:13:52 MST 2000","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","-75% similar to PDB:1NKW Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans (E_value = 2.0E_53);-75% similar to PDB:1NWX COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH ABT-773 (E_value = 2.0E_53);-75% similar to PDB:1NWY COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN (E_value = 2.0E_53);-75% similar to PDB:1PNU Crystal Structure of a Streptomycin Dependent Ribosome from Escherichia Coli, 50S Subunit of 70S Ribosome. THIS FILE, 1PNU, CONTAINS ONLY MOLECULES OF THE 50S RIBOSOMAL SUBUNIT. THE 30S SUBUNIT, MRNA, P-SITE TRNA, AND A-SITE TRNA ARE IN THE PDB FILE 1PNS. (E_value = 2.0E_53);-75% similar to PDB:1PNY Crystal Structure of the Wild Type Ribosome from E. Coli, 50S Subunit of 70S Ribosome. THIS FILE, 1PNY, CONTAINS ONLY MOLECULES OF THE 50S RIBOSOMAL SUBUNIT. THE 30S SUBUNIT IS IN THE PDB FILE 1PNX. (E_value = 2.0E_53);","","","Residues 27 to 83 (E-value = 1.7e-22) place PG1679 in the Ribosomal_L5 family which is described as Ribosomal protein L5 (PF00281)Residues 87 to 180 (E-value = 9.1e-44) place PG1679 in the Ribosomal_L5_C family which is described as ribosomal L5P family C-terminus (PF00673)","Wed Mar 22 14:13:52 MST 2000","34541529","","","","","","1","","","PG1926" "PG1680","2019650","2019333","318","ATGAGTAAATTACATATAAAGAAAGGTGATACCGTCATGGTGATCAGTGGCGAAGACAAGGGCCACTCCGGTCGCGTTTTGGAGGTATTAGTAAAGGAACAGCGTGCTATCGTTGAAGGGCTGAATATGATCAAAAAGCATGCTAAGCCTAGCGCCAAGAATCCTCAGGGTGGAATCATATCAAAGGAAGCTCCTATACATATTTCCAACCTGAATGTTGTCGATCCCAAAACAGGAAAGGCAACTCGCATTGGCCGTCGTCTCAATGAGAATGGCAAATTAGTTCGTTACGCTAAAAAATCAGGAGAGGAGATTAAA","10.90","11.95","11585","MSKLHIKKGDTVMVISGEDKGHSGRVLEVLVKEQRAIVEGLNMIKKHAKPSAKNPQGGIISKEAPIHISNLNVVDPKTGKATRIGRRLNENGKLVRYAKKSGEEIK","50S ribosomal protein L24","RL24 is believed to be involved in the earlyassembly of the 50S subunit. TIGR ID: PG1927","50S ribosomal protein L24","Cytoplasm","Residues 4-103 are 63% similar to ribosomal protein L24 from Bacillus halodurans (gi|7674247|). ","
InterPro
IPR003256
Family
Ribosomal protein L24
PD001677\"[8-42]TRibosomal_L24
PTHR12903\"[1-105]TRibosomal_L24
TIGR01079\"[3-105]TrplX_bact
InterPro
IPR005824
Domain
KOW
PF00467\"[6-39]TKOW
InterPro
IPR005825
Family
Ribosomal protein L24/L26
PS01108\"[9-26]TRIBOSOMAL_L24
InterPro
IPR006646
Domain
KOW (Kyrpides, Ouzounis, Woese) motif
SM00739\"[5-32]TKOW
InterPro
IPR008991
Domain
Translation protein SH3-like
SSF50104\"[3-94]TTransl_SH3_like
InterPro
IPR014723
Domain
Ribosomal protein L24, SH3-like
G3DSA:2.30.30.200\"[3-94]TRibosomal_L24_SH3-like


","BeTs to 16 clades of COG0198COG name: Ribosomal protein L24Functional Class: JThe phylogenetic pattern of COG0198 is amtkYqvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB000302 (Ribosomal protein L24) with a combined E-value of 3.3e-22. IPB000302A 6-42 IPB000302B 63-73","Residues 4-71 are 63% similar to a (PROTEIN RIBOSOMAL L24 50S CHLOROPLAST 60S L24P) protein domain (PD001677) which is seen in Q9Z9K3_BBBBB.","","Thu Jun 14 12:24:24 MDT 2001","","Thu Jun 14 12:24:24 MDT 2001","Thu Jun 14 12:24:24 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:24:24 MDT 2001","Thu Jun 14 12:24:24 MDT 2001","Wed Mar 22 14:17:19 MST 2000","Mon Jun 25 16:26:55 MDT 2001","Wed Mar 22 14:17:19 MST 2000","Mon Jun 25 16:26:55 MDT 2001","Thu Jun 14 12:24:24 MDT 2001","Mon Jun 25 16:26:55 MDT 2001","Mon Jun 25 16:26:55 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Jun 14 12:24:24 MDT 2001","-74% similar to PDB:1NKW Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans (E_value = 1.5E_24);-74% similar to PDB:1NWX COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH ABT-773 (E_value = 1.5E_24);-74% similar to PDB:1NWY COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN (E_value = 1.5E_24);-74% similar to PDB:1PNU Crystal Structure of a Streptomycin Dependent Ribosome from Escherichia Coli, 50S Subunit of 70S Ribosome. THIS FILE, 1PNU, CONTAINS ONLY MOLECULES OF THE 50S RIBOSOMAL SUBUNIT. THE 30S SUBUNIT, MRNA, P-SITE TRNA, AND A-SITE TRNA ARE IN THE PDB FILE 1PNS. (E_value = 1.5E_24);-74% similar to PDB:1PNY Crystal Structure of the Wild Type Ribosome from E. Coli, 50S Subunit of 70S Ribosome. THIS FILE, 1PNY, CONTAINS ONLY MOLECULES OF THE 50S RIBOSOMAL SUBUNIT. THE 30S SUBUNIT IS IN THE PDB FILE 1PNX. (E_value = 1.5E_24);","","","Residues 6 to 39 (E-value = 5.3e-10) place PG1680 in the KOW family which is described as KOW motif (PF00467)","Mon Jun 25 16:26:55 MDT 2001","34541530","","","","","","1","","","PG1927" "PG1681","2020038","2019676","363","ATGATACAACAAGAATCAAGACTCGTTGTCGCTGACAACAGCGGAGCAAAAGAAGCTCTCTGTATTCGTGTTTTGGGCGGCACGCGCAGACGTTATGCCTCTGTGGGTGATATCATCGTGGTTTCGGTCAAGAGTGTTATCCCTTCAAGCGATATCAAGAAAGGTGCTGTCTCCAAAGCTGTAATCGTACGTACGAAGAAAGAAGTTCGTCGTCCCGATGGATCGTATATCCGTTTTGACGACAATGCTTGTGTCTTGCTGAATGCAGCCGGTGATATTCGTGGCAGCCGTATCTTCGGACCGGTCGCACGCGAACTGCGTGGAACAAATATGAAAATTGTTTCTCTCGCTCCCGAAGTATTA","10.90","8.89","13049","MIQQESRLVVADNSGAKEALCIRVLGGTRRRYASVGDIIVVSVKSVIPSSDIKKGAVSKAVIVRTKKEVRRPDGSYIRFDDNACVLLNAAGDIRGSRIFGPVARELRGTNMKIVSLAPEVL","50S ribosomal protein L14","The L14 protein is thought to directly bind to23S RNA.TIGR ID: PG1928","50S ribosomal protein L14","Cytoplasm","This sequence is similar to CT518 of Chlamydia trachomatis.","
InterPro
IPR000218
Family
Ribosomal protein L14b/L23e
PD001093\"[1-120]TRibosomal_L14
G3DSA:2.40.150.20\"[1-121]TRibosomal_L14
PTHR11761\"[1-121]TRibosomal_L14
PF00238\"[1-121]TRibosomal_L14
PS00049\"[60-86]TRIBOSOMAL_L14
SSF50193\"[1-121]TRibosomal_L14
InterPro
IPR005745
Family
Ribosomal protein L14, bacterial and organelle form
PTHR11761:SF3\"[1-121]TRibosom_L14_bac
TIGR01067\"[1-121]TrplN_bact


","BeTs to 17 clades of COG0093COG name: Ribosomal protein L14Functional Class:  JThe phylogenetic pattern of COG0093 is amtkYqvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB000218 (Ribosomal protein L14b/L23e family) with a combined E-value of 1.8e-59. IPB000218A 1-26 IPB000218B 32-67 IPB000218C 73-108","Residues 1-121 are 60% similar to a (PROTEIN RIBOSOMAL L14 50S RRNA-BINDING 60S CHLOROPLAST) protein domain (PD001093) which is seen in RL14_MYCLE.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","Wed Mar 22 14:18:48 MST 2000","Wed Mar 22 14:18:48 MST 2000","Wed Mar 22 14:18:48 MST 2000","Wed Mar 22 14:18:48 MST 2000","Wed Mar 22 14:18:48 MST 2000","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","-70% similar to PDB:1C04 IDENTIFICATION OF KNOWN PROTEIN AND RNA STRUCTURES IN A 5 A MAP OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI (E_value = 4.3E_32);-70% similar to PDB:1GIY CRYSTAL STRUCTURE OF THE RIBOSOME AT 5.5 A RESOLUTION. THIS FILE, 1GIY, CONTAINS THE 50S RIBOSOME SUBUNIT. THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES ARE IN THE FILE 1GIX (E_value = 4.3E_32);-70% similar to PDB:1ML5 Structure of the E. coli ribosomal termination complex with release factor 2 (E_value = 4.3E_32);-70% similar to PDB:1WHI RIBOSOMAL PROTEIN L14 (E_value = 4.3E_32);-70% similar to PDB:1YL3 Crystal structure of 70S ribosome with thrS operator and tRNAs. Large subunit. The coordinates for the small subunit are in the pdb entry 1YL4. (E_value = 4.3E_32);","","","Residues 1 to 121 (E-value = 5.3e-72) place PG1681 in the Ribosomal_L14 family which is described as Ribosomal protein L14p/L23e (PF00238)","","34541531","","","","","","1","","","PG1928" "PG1682","2020294","2020043","252","ATGGAAAGAAATCTTAGAAAAGAACGTGTGGGTGTTGTCTCAAGCAACAAAATGGATAAGACTATCACGGTTGCTGTGAAGTGGAAAGAGAAGCATCCTATATATGGTAAGTTTGTCAATAAGACAAAAAAATACCACGCACATGACGAGAAGAATGAATGCGGTATCGGTGATACGGTACGTATCATGGAGACGCGTCCTCTGAGTCGTACAAAGAGATGGAGACTAACTGAAATAATCGAAAGGGCAAAA","11.00","11.66","9979","MERNLRKERVGVVSSNKMDKTITVAVKWKEKHPIYGKFVNKTKKYHAHDEKNECGIGDTVRIMETRPLSRTKRWRLTEIIERAK","30S ribosomal protein S17","The S17 protein is thought to bind directly tothe 5' end of 16S RNA.TIGR ID: PG1929","30S ribosomal protein S17","Cytoplasm","This sequence is similar to CT519 of Chlamydia trachomatis.","
InterPro
IPR000266
Family
Ribosomal protein S17
PD001295\"[11-74]TRibosomal_S17
PR00973\"[25-48]T\"[57-67]T\"[67-74]TRIBOSOMALS17
PTHR10744\"[3-83]TRibosomal_S17
PF00366\"[11-79]TRibosomal_S17
PS00056\"[57-69]TRIBOSOMAL_S17
InterPro
IPR012340
Domain
Nucleic acid-binding, OB-fold
G3DSA:2.40.50.140\"[6-81]TOB_NA_bd_sub
noIPR
unintegrated
unintegrated
SSF50249\"[5-83]TNucleic_acid_OB


","BeTs to 17 clades of COG0186COG name: Ribosomal protein S17Functional Class:  JThe phylogenetic pattern of COG0186 is amtkYqvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB000266 (Ribosomal protein S17) with a combined E-value of 9.6e-39. IPB000266A 11-50 IPB000266B 57-79","Residues 11-79 are 65% similar to a (PROTEIN RIBOSOMAL 30S RRNA-BINDING S17 40S S11) protein domain (PD001295) which is seen in RS17_THEMA.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","Wed Mar 22 14:20:24 MST 2000","Wed Mar 22 14:20:24 MST 2000","Wed Mar 22 14:20:24 MST 2000","Wed Mar 22 14:20:24 MST 2000","Wed Mar 22 14:20:24 MST 2000","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","-78% similar to PDB:1EG0 FITTING OF COMPONENTS WITH KNOWN STRUCTURE INTO AN 11.5 A CRYO-EM MAP OF THE E.COLI 70S RIBOSOME (E_value = 1.5E_24);-78% similar to PDB:1QD7 PARTIAL MODEL FOR 30S RIBOSOMAL SUBUNIT (E_value = 6.1E_23);-78% similar to PDB:1RIP RIBOSOMAL PROTEIN S17: CHARACTERIZATION OF THE THREE-DIMENSIONAL STRUCTURE BY 1H-AND 15N-NMR (E_value = 6.1E_23);-74% similar to PDB:1P6G Real space refined coordinates of the 30S subunit fitted into the low resolution cryo-EM map of the EF-G.GTP state of E. coli 70S ribosome (E_value = 2.6E_21);-74% similar to PDB:1P87 Real space refined coordinates of the 30S subunit fitted into the low resolution cryo-EM map of the initiation-like state of E. coli 70S ribosome (E_value = 2.6E_21);","","","Residues 11 to 79 (E-value = 4.9e-36) place PG1682 in the Ribosomal_S17 family which is described as Ribosomal protein S17 (PF00366)","","34541532","","","","","","1","","","PG1929" "PG1682.1","2020502","2020311","192","ATGAAGATTGCCGAAATTAAAGAGCTTGCAACAAAAGAGCTCCAGGAGCGATTGGATGCCGAAGTGGCTGCTTATGACCAAATGCGAATCAACCATGCGGTTTCGCCTTTGGATAGTCCTGCTAAACTAAAGCATCAACGTCGTATGATTGCGCAGATGAAGACAGTGCTGCGCCAACGCGAACTCAATAAA","0.00","0.00","7468","MKIAEIKELATKELQERLDAEVAAYDQMRINHAVSPLDSPAKLKHQRRMIAQMKTVLRQRELNK","","TIGR ID: PG1930","50S ribosomal protein L29","Cytoplasm","Several weak hits using gapped BLAST all to ribosomal protein L29, including residues 1-62 are 35% similar to gi|10172754|dbj|BAB03861.1| (AP001507) in Bacillus halodurans, residues 50-62 are 36% similar to gi|2344840|emb|CAB11442.1| (Z98756) in Mycobacterium leprae and residues 5-62 are 37% similar to gi|13093547|emb|CAC30809.1| (AL583923) in Mycobacterium leprae.","
InterPro
IPR001854
Family
Ribosomal protein L29
PF00831\"[3-60]TRibosomal_L29
TIGR00012\"[5-60]TL29
SSF46561\"[1-62]TRibosomal_L29
noIPR
unintegrated
unintegrated
G3DSA:1.10.287.310\"[1-59]TG3DSA:1.10.287.310


","BeTs to 7 clades of COG0255COG name: Ribosomal protein L29Functional Class: JThe phylogenetic pattern of COG0593 is amtkYqvcebrhujgpolinx Number of proteins in this genome belonging to this COG is 1","","","Thu Jul 5 16:16:29 MDT 2001","Thu Jul 5 16:16:29 MDT 2001","Thu Jul 5 16:16:29 MDT 2001","Thu Jul 5 16:16:29 MDT 2001","Thu Jul 5 16:17:07 MDT 2001","Thu Jul 5 16:16:29 MDT 2001","Thu Jul 5 16:16:29 MDT 2001","Thu Jul 5 16:17:07 MDT 2001","Thu Jul 5 16:17:07 MDT 2001","Thu Jul 5 16:16:29 MDT 2001","Thu Jul 5 16:16:29 MDT 2001","Thu Jul 5 16:16:29 MDT 2001","Thu Jul 5 16:27:39 MDT 2001","Thu Jul 5 16:21:50 MDT 2001","Thu Jul 5 16:16:29 MDT 2001","Thu Jul 5 16:16:29 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Thu Jul 5 16:21:50 MDT 2001","Thu Jul 5 16:16:29 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 3 to 60 (E-value = 1.3e-11) place PG1682.1 in the Ribosomal_L29 family which is described as Ribosomal L29 protein (PF00831)","Thu Jul 5 16:16:29 MDT 2001","34541533","","","","","","1","Thu Jul 5 16:16:29 MDT 2001","","PG1930" "PG1683","2020942","2020511","432","ATGTTACAACCAAAAAAAACAAAGTTTAGAAGACAGCAGAAAGGTCGCATGAAGGGTTTTGCCCAGAGAGGTAACCAGTTGTCTTTCGGTTCTTTTGGAATCAAGTCTTTGCAGAGCAAGTGGATAACCGGTCGTCAGATTGAGGCCGCTCGTATTGCAGTGACTCGCTATATGCAGCGTCAAGGACAAGTATGGGTTCGTATTTTCCCTGACAAGCCTATTACCAAGAAGGGAGAAGGTGTCCGTATGGGTAAAGGTAAGGGTGCTCCGGAAGGTTTCGTTGCTCCTATTACTCCCGGTCGAATCATTTTCGAAGTGGAAGGTGTGCCTTACGAAATAGCTAAGGAAGCTCTTCGTTTGGCTGCTCAGAAGCTCCCCGTAACGACTAAGTTCGTGGTTCGTCACGATTATGATATCCAAAATCAAAATGCG","11.60","18.23","16299","MLQPKKTKFRRQQKGRMKGFAQRGNQLSFGSFGIKSLQSKWITGRQIEAARIAVTRYMQRQGQVWVRIFPDKPITKKGEGVRMGKGKGAPEGFVAPITPGRIIFEVEGVPYEIAKEALRLAAQKLPVTTKFVVRHDYDIQNQNA","50S ribosomal protein L16","The L16 protein is thought to bind directly to23S RNA.TIGR ID: PG1931","50S ribosomal protein L16","Periplasm, Cytoplasm, Extracellular","This sequence is similar to CT521 of Chlamydia trachomatis.","
InterPro
IPR000114
Family
Ribosomal protein L16
PR00060\"[24-36]T\"[42-53]T\"[58-87]T\"[88-117]TRIBOSOMALL16
PF00252\"[1-132]TRibosomal_L16
TIGR01164\"[2-127]TrplP_bact
PS00701\"[82-93]TRIBOSOMAL_L16_2
noIPR
unintegrated
unintegrated
G3DSA:3.90.1170.10\"[42-139]TG3DSA:3.90.1170.10
PTHR12220\"[1-144]TPTHR12220
SSF54686\"[3-139]TSSF54686


","BeTs to 16 clades of COG0197COG name: Ribosomal protein L16/L10EFunctional Class:  JThe phylogenetic pattern of COG0197 is amtkYqvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB000114 (Ribosomal protein L16) with a combined E-value of 2.6e-60. IPB000114A 6-60 IPB000114B 63-109","Residues 1-132 are 59% similar to a (PROTEIN RIBOSOMAL L16 50S 60S RRNA-BINDING MITOCHONDRION) protein domain (PD001146) which is seen in RL16_BACSU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","Wed Mar 22 14:22:15 MST 2000","Wed Mar 22 14:22:15 MST 2000","Wed Mar 22 14:22:15 MST 2000","Wed Mar 22 14:22:15 MST 2000","Wed Mar 22 14:22:15 MST 2000","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","-79% similar to PDB:1P85 Real space refined coordinates of the 50S subunit fitted into the low resolution cryo-EM map of the EF-G.GTP state of E. coli 70S ribosome (E_value = 9.1E_41);-79% similar to PDB:1P86 Real space refined coordinates of the 50S subunit fitted into the low resolution cryo-EM map of the initiation-like state of E. coli 70S ribosome (E_value = 9.1E_41);-79% similar to PDB:1VS6 Crystal structure of the bacterial ribosome from escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution. this file contains the 50s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes and is described in remark 400. (E_value = 9.1E_41);-79% similar to PDB:1VS8 Crystal structure of the bacterial ribosome from escherichia coli in complex with the antibiotic kasugamyin at 3.5a resolution. this file contains the 30s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes and is described in remark 400. (E_value = 9.1E_41);-79% similar to PDB:2AW4 Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution. This file contains the 50S subunit of one 70S ribosome. The entire crystal structure contains two 70S ribosomes and is described in remark 400. (E_value = 9.1E_41);","","","Residues 1 to 132 (E-value = 9.3e-80) place PG1683 in the Ribosomal_L16 family which is described as Ribosomal protein L16 (PF00252)Residues 2 to 142 (E-value = 4.3e-05) place PG1683 in the Ribosomal_L10e family which is described as Ribosomal L10 (PF00826)","Wed Mar 22 14:22:15 MST 2000","34541534","","","","","","1","","","PG1931" "PG1684","2021703","2020966","738","ATGGGACAGAAAATAAATCCGGTAAGTAATCGTTTGGGAATCATCCGTGGATGGGATTCCAATTGGTATGGTGGTCGTAAATATGGTGAGACGCTATTGGAAGATAGTCGTATTCGTCAGTATTTGAACGCTCGCCTTGCCAAAGCCAGTGTATCGCGTATCGTTATTGAACGTGCATTGAAGTTGGTTACCATTACCATCTGTACCGCTCGCCCGGGTATGATCATCGGCAAGGCCGGTCAGGAAGTCGATAAGCTGAAAGAAGAGTTGAAGCGCATCACGAAAAAGGATGTCCAGATCAATATCTATGAGATCCGGAAGCCTGAGTTGGATGCTGCTATTGTGGCTGAGAATATCGCTCGCCAGCTGGAAGGAAAGATCGCTTATCGTCGTGCCGTAAAAATGGCTATTGCATCGGCTATGCGTATGGGGGCAGAAGGCATCAAGATTCAAGTCTCCGGCCGTTTGAACGGTGCGGAAATGGCACGCTCTGAAATGTTCAAGGAAGGGCGTACTCCTCTGCATACTCTCCGTGCGGACATTGACTATGCCTTGGCAGAGGCTCTGACTAAGGTCGGCTTGCTCGGTATCAAGGTTTGGATTTGCAAAGGGkAGGTTTACGAGAAACGCGACCTCGCCCCCAATTTTGCAGTGGCCAAAAACCAAAGCCGTCGTCCCAATGCACAGGGCGGCAACAACCGTGGCGGTGATCGCAACCGTAGAAGAAAAGGTAATCGC","11.20","24.15","59868","MGQKINPVSNRLGIIRGWDSNWYGGRKYGETLLEDSRIRQYLNARLAKASVSRIVIERALKLVTITICTARPGMIIGKAGQEVDKLKEELKRITKKDVQINIYEIRKPELDAAIVAENIARQLEGKIAYRRAVKMAIASAMRMGAEGIKIQVSGRLNGAEMARSEMFKEGRTPLHTLRADIDYALAEALTKVGLLGIKVWICKGXVYEKRDLAPNFAVAKNQSRRPNAQGGNNRGGDRNRRRKGNR","2021702 2020965","The S3 protein is apparently involved in thebinding of initiator Met-tRNA.TIGR ID: PG1932","30S ribosomal protein S3","Cytoplasm","This sequence is similar to CT522 of Chlamydia trachomatis. Numerous significant hits to 30S ribosomal protein S3 in gapped BLAST; e.g. residues 1-206 are 58% similar to dbj|BAB03859.1| 30S ribosomal protein S3 of Bacillus halodurans, residues 1-206 are 57% similar to gb|AAC45962.1| S3 of Bacillus subtilis, residues 1-206 are 57% similar to emb|CAA38740.1| ribosomal protein S3 of [Bacillus stearothermophilus.This sequence is similar to BT2721.","
InterPro
IPR001351
Domain
Ribosomal protein S3, C-terminal
G3DSA:3.30.1140.32\"[107-206]Tno description
PF00189\"[118-201]TRibosomal_S3_C
PS00548\"[162-196]TRIBOSOMAL_S3
InterPro
IPR004044
Domain
KH, type 2
PF07650\"[62-116]TKH_2
PS50823\"[38-106]TKH_TYPE_2
InterPro
IPR004087
Domain
KH
SM00322\"[59-124]TKH
InterPro
IPR005704
Family
Bacterial ribosomal protein S3
TIGR01009\"[1-210]TrpsC_bact: ribosomal protein S3
InterPro
IPR008282
Domain
Ribosomal protein S3, N-terminal
PF00417\"[1-61]TRibosomal_S3_N
InterPro
IPR009019
Domain
KH, prokaryotic type
G3DSA:3.30.300.20\"[17-106]Tno description
noIPR
unintegrated
unintegrated
PTHR11760\"[89-243]T30S/40S RIBOSOMAL PROTEIN S3
PTHR11760:SF10\"[89-243]TCHLOROPLAST 30S RIBOSOMAL PROTEIN S3


","No hit to the COGs database.","***** IPB001351 (Ribosomal protein S3) with a combined E-value of 4.5e-51. IPB001351A 2-23 IPB001351B 28-39 IPB001351C 129-166 IPB001351D 181-201***** PF00013 (KH domain) with a combined E-value of 7.2e-13. PF00013A 75-86 PF00013B 106-116 PF00013C 144-158","Residues 88-201 are 57% similar to a (PROTEIN RIBOSOMAL S3 30S TRNA-BINDING CHLOROPLAST) protein domain (PD000851) which is seen in Q9ZJR9_BBBBB.Residues 99-201 are 39% similar to a (RIBOSOMAL PROTEIN S3 40S) protein domain (PD150147) which is seen in O59424_PYRHO.Residues 2-87 are 55% similar to a (PROTEIN RIBOSOMAL S3 30S) protein domain (PD001959) which is seen in RS3_BACSU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","Tue Feb 6 13:45:07 MST 2001","Tue Feb 6 13:45:07 MST 2001","","Fri Dec 19 09:43:35 2003","Wed Mar 22 14:24:30 MST 2000","Fri Dec 19 09:43:35 2003","Tue Feb 6 13:45:07 MST 2001","Fri Dec 19 09:43:35 2003","Fri Dec 19 09:43:35 2003","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Dec 19 09:43:35 2003","-76% similar to PDB:1VS5 Crystal structure of the bacterial ribosome from escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution. this file contains the 30s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes and is described in remark 400. (E_value = 7.4E_63);-76% similar to PDB:1VS7 Crystal structure of the bacterial ribosome from escherichia coli in complex with the antibiotic kasugamyin at 3.5a resolution. this file contains the 30s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes and is described in remark 400. (E_value = 7.4E_63);-76% similar to PDB:1P6G Real space refined coordinates of the 30S subunit fitted into the low resolution cryo-EM map of the EF-G.GTP state of E. coli 70S ribosome (E_value = 2.8E_62);-76% similar to PDB:1P87 Real space refined coordinates of the 30S subunit fitted into the low resolution cryo-EM map of the initiation-like state of E. coli 70S ribosome (E_value = 2.8E_62);-76% similar to PDB:2AVY Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution. This file contains the 30S subunit of one 70S ribosome. The entire crystal structure contains two 70S ribosomes and is described in remark 400. (E_value = 2.8E_62);","","","Residues 1 to 61 (E-value = 1e-23) place PG1684 in the Ribosomal_S3_N family which is described as Ribosomal protein S3, N-terminal domain (PF00417)Residues 118 to 201 (E-value = 3.5e-45) place PG1684 in the Ribosomal_S3_C family which is described as Ribosomal protein S3, C-terminal domain (PF00189)","Fri Dec 19 09:43:35 2003","34541535","","","","","","1","","","PG1932" "PG1685","2022060","2021713","348","ATGTACTTTGCCAAGCTTCGTAACGTGCCTACTTCTCCCCGCAAGATGAGATTGGTGGCCGATATGATTCGTGGTATGGAAGTGAATCGCGCCTTGGGTGTGCTGAAGTTCTCTAACAAAGAAGCTTCGGCACGTGTAGAGAAGCTGCTGCGTTCTGCAGTGGCAAACTGGGAAGAGAAGAACGAGCGTAAAGCCGAAGAGGGTGAGTTGTTCGTGTCTCGTATTTGTGTAGACGGTGCTTCTACGCTCAAACGCCTTCGCCCTGCACCACAGGGTCGTGGCTATCGGATTCGTAAACGCTCGAATCACGTGACCATTTATGTAGATACGCTTAATAACGATAATAAC","11.20","11.18","13303","MYFAKLRNVPTSPRKMRLVADMIRGMEVNRALGVLKFSNKEASARVEKLLRSAVANWEEKNERKAEEGELFVSRICVDGASTLKRLRPAPQGRGYRIRKRSNHVTIYVDTLNNDNN","50S ribosomal protein L22","The L22 protein is said to be important forearly stages of 50S reconstitution.TIGR ID: PG1933","50S ribosomal protein L22","Cytoplasm, Periplasm","Residues 4-110 are 44% similar to 50S ribosomal protein L22 from treptomyces coelicolor A3(2) (gi|7321297|).","
InterPro
IPR001063
Family
Ribosomal protein L22/L17
PD001032\"[28-106]TRibosomal_L22
G3DSA:3.90.470.10\"[3-114]TRibosomal_L22
PF00237\"[4-110]TRibosomal_L22
SSF54843\"[1-110]TRibosomal_L22
InterPro
IPR005727
Family
Ribosomal protein L22, bacterial and organelle form
PTHR13501\"[6-56]TRibosom_L22_bac
TIGR01044\"[4-108]TrplV_bact


","BeTs to 12 clades of COG0091COG name: Ribosomal protein L22Functional Class: JThe phylogenetic pattern of COG0091 is amtkYqvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB001063 (Ribosomal protein L22p / L17e) with a combined E-value of 1.3e-18. IPB001063A 35-60 IPB001063B 70-108","Residues 18-108 are 41% similar to a (PROTEIN RIBOSOMAL L22 50S RRNA-BINDING CHLOROPLAST 60S) protein domain (PD001032) which is seen in RL22_HAEIN.","","Thu Jun 14 12:24:55 MDT 2001","","Thu Jun 14 12:24:55 MDT 2001","Thu Jun 14 12:24:55 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:24:55 MDT 2001","Thu Jun 14 12:24:55 MDT 2001","Wed Mar 22 14:28:14 MST 2000","Mon Jun 25 16:24:41 MDT 2001","Wed Mar 22 14:28:14 MST 2000","Mon Jun 25 16:24:41 MDT 2001","Thu Jun 14 12:24:55 MDT 2001","Mon Jun 25 16:24:41 MDT 2001","Mon Jun 25 16:24:41 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Jun 14 12:24:55 MDT 2001","-65% similar to PDB:1P85 Real space refined coordinates of the 50S subunit fitted into the low resolution cryo-EM map of the EF-G.GTP state of E. coli 70S ribosome (E_value = 4.7E_15);-65% similar to PDB:1P86 Real space refined coordinates of the 50S subunit fitted into the low resolution cryo-EM map of the initiation-like state of E. coli 70S ribosome (E_value = 4.7E_15);-65% similar to PDB:1VS6 Crystal structure of the bacterial ribosome from escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution. this file contains the 50s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes and is described in remark 400. (E_value = 4.7E_15);-65% similar to PDB:1VS8 Crystal structure of the bacterial ribosome from escherichia coli in complex with the antibiotic kasugamyin at 3.5a resolution. this file contains the 30s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes and is described in remark 400. (E_value = 4.7E_15);-65% similar to PDB:2AW4 Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution. This file contains the 50S subunit of one 70S ribosome. The entire crystal structure contains two 70S ribosomes and is described in remark 400. (E_value = 4.7E_15);","","","Residues 4 to 110 (E-value = 4.2e-29) place PG1685 in the Ribosomal_L22 family which is described as Ribosomal protein L22p/L17e (PF00237)","Mon Jun 25 16:24:41 MDT 2001","34541536","","","","","","1","","","PG1933" "PG1686","2022438","2022172","267","ATGAGTCGTTCACTTAAGAAAGGTCCATATATTAATCTCAAGCTGGAAAAGAAGGTCTTGGCGATGAACGAGAGCGGCAAGAAAGCTGTCATTAAGACGTGGGCTCGTGCCTCAATGATTTCTCCCGACTTCGTGGGACATACCATTGCAGTGCATAACGGAAATAAGTTTATTCCTGTTTTTGTTACCGAAAACATGGTGGGGCATAAGTTAGGGGAGTTCTCTCCTACACGTACTTTCCGTGGTCATGCCGGTAACAAGAAGAAG","11.30","12.94","9892","MSRSLKKGPYINLKLEKKVLAMNESGKKAVIKTWARASMISPDFVGHTIAVHNGNKFIPVFVTENMVGHKLGEFSPTRTFRGHAGNKKK","30S ribosomal protein S19","S19 apparently forms a complex with S13.TIGR ID: PG1934","30S ribosomal protein S19","Periplasm, Cytoplasm","This sequence is similar to CT524 of Chlamydia trachomatis.","
InterPro
IPR002222
Family
Ribosomal protein S19/S15
PD001012\"[10-83]TRibosomal_S19
PR00975\"[33-52]T\"[53-65]T\"[65-80]TRIBOSOMALS19
G3DSA:3.30.860.10\"[1-89]TRibosomal_S19
PTHR11880\"[1-89]TRibosomal_S19
PF00203\"[3-83]TRibosomal_S19
PS00323\"[53-77]TRIBOSOMAL_S19
SSF54570\"[2-85]TRibosomal_S19
InterPro
IPR005732
Family
Ribosomal protein S19, bacterial and organelle form
TIGR01050\"[1-89]TrpsS_bact


","BeTs to 17 clades of COG0185COG name: Ribosomal protein S19Functional Class:  JThe phylogenetic pattern of COG0185 is amtkYqvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB002222 (Ribosomal protein S19) with a combined E-value of 1.4e-41. IPB002222 31-83","Residues 3-83 are 66% similar to a (PROTEIN RIBOSOMAL S19 30S CHLOROPLAST RRNA-BINDING 40S) protein domain (PD001012) which is seen in RS19_THEMA.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","Wed Mar 22 14:30:23 MST 2000","Wed Mar 22 14:30:23 MST 2000","Wed Mar 22 14:30:23 MST 2000","Wed Mar 22 14:30:23 MST 2000","Wed Mar 22 14:30:23 MST 2000","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","-78% similar to PDB:1VS5 Crystal structure of the bacterial ribosome from escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution. this file contains the 30s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes and is described in remark 400. (E_value = 8.3E_28);-78% similar to PDB:1VS7 Crystal structure of the bacterial ribosome from escherichia coli in complex with the antibiotic kasugamyin at 3.5a resolution. this file contains the 30s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes and is described in remark 400. (E_value = 8.3E_28);-78% similar to PDB:1FJG STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH THE ANTIBIOTICS STREPTOMYCIN, SPECTINOMYCIN, AND PAROMOMYCIN (E_value = 2.4E_27);-78% similar to PDB:1FKA STRUCTURE OF FUNCTIONALLY ACTIVATED SMALL RIBOSOMAL SUBUNIT AT 3.3 A RESOLUTION (E_value = 2.4E_27);-78% similar to PDB:1GIX Crystal structure of the ribosome at 5.5 A resolution. This file, 1GIX, contains the 30S ribosome subunit, three tRNA, and mRNA molecules. 50S ribosome subunit is in the file 1GIY (E_value = 2.4E_27);","","","Residues 3 to 83 (E-value = 2.2e-45) place PG1686 in the Ribosomal_S19 family which is described as Ribosomal protein S19 (PF00203)","","34541537","","","","","","1","","","PG1934" "PG1687","2023285","2022464","822","ATGGGAATACGTAAACTCAAGCCCACAACCCCGGGGCAAAGACACAAGGTTATTGGTGCGTTTGATAAGATCACTGCAAGCACACCAGAAAAGTCTCTTGTAGTTGGTAAGAAGAAAACGGGTGGCCGTAACAATACCGGTAAGATGACAATGCGTTACATCGGTGGTGGTCACAAACAAAAGTATCGTTTCATCGACTTCAAGAGAACGAAAGATGGCATTCCTGCTACAGTAAAGACCATCGAGTACGACCCTAATCGTTCGTCTCGTATCGCGCTGCTTTACTATGCGGACGGAGCAAAGGCTTATATCATCGCTCCGGACGGACTGGAAGTCGGCCATACAGTGATGTCAGGTAGCGAAGCTGCACCCGAAGTCGGCAACGCTCTTCCTCTGGCGAATATACCCGTCGGTACGATTATTCACAACATTGAGCTTCGCCCGGGCCAGGGTGCCAAGATGGTTCGCTCTGCCGGATCATTTGCCCAGCTGACTTCTCGCGAAGGAACCTATGTGGTGATCAAGATGCCTTCAGGCGAGGTTCGTCGTATTTTGTCTACTTGTAAGGCTACGATCGGTAGCGTGGGCAACTCTGACCATGCTCTGGAAAAATCGGGAAAGGCCGGTCGTTCTCGCTGGTTGGGTCGCAGACCTCACAACCGAGGCGTGGTGATGAACCCTGTGGATCACCCCATGGGTGGTGGTGAAGGTCGCCAGTCAGGAGGTCATCCCCGTTCACGCAAGGGCTTGTATGCTAAGGGCTTGAAGACAAGAGCTCCGAAGAAGCATTCTTCTAAGTACATCATTGAGAGAAGGAAAAAG","11.40","35.11","29704","MGIRKLKPTTPGQRHKVIGAFDKITASTPEKSLVVGKKKTGGRNNTGKMTMRYIGGGHKQKYRFIDFKRTKDGIPATVKTIEYDPNRSSRIALLYYADGAKAYIIAPDGLEVGHTVMSGSEAAPEVGNALPLANIPVGTIIHNIELRPGQGAKMVRSAGSFAQLTSREGTYVVIKMPSGEVRRILSTCKATIGSVGNSDHALEKSGKAGRSRWLGRRPHNRGVVMNPVDHPMGGGEGRQSGGHPRSRKGLYAKGLKTRAPKKHSSKYIIERRKK","50S ribosomal protein L2","In E.coli the L2 protein binds 23S RNA and haspeptidyltransferase activity.TIGR ID: PG1935","50S ribosomal protein L2","Periplasm, Cytoplasm, Extracellular","This sequence is similar to CT525 and BT2724.","
InterPro
IPR002171
Family
Ribosomal protein L2
PTHR13691\"[93-274]TRibosomal_L2
PF00181\"[42-118]TRibosomal_L2
PF03947\"[124-251]TRibosomal_L2_C
PS00467\"[218-229]TRIBOSOMAL_L2
InterPro
IPR005880
Family
Ribosomal protein L2, bacterial and organelle form
PTHR13691:SF5\"[93-274]TRibosom_L2_bac
TIGR01171\"[3-274]TrplB_bact
InterPro
IPR008991
Domain
Translation protein SH3-like
SSF50104\"[127-267]TTransl_SH3_like
InterPro
IPR012340
Domain
Nucleic acid-binding, OB-fold
G3DSA:2.40.50.140\"[38-114]TOB_NA_bd_sub
InterPro
IPR014722
Domain
Translation protein SH3-like, subgroup
G3DSA:2.30.30.30\"[118-197]TRibosomal_L2
noIPR
unintegrated
unintegrated
SSF50249\"[38-126]TNucleic_acid_OB


","BeTs to 17 clades of COG0090COG name: Ribosomal protein L2Functional Class:� JThe phylogenetic pattern of COG0090 is amtkYqvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB002171 (Ribosomal protein L2) with a combined E-value of 9.2e-99. IPB002171A 42-69 IPB002171B 74-107 IPB002171C 127-168 IPB002171D 174-213 IPB002171E 218-235","Residues 116-272 are 57% similar to a (PROTEIN RIBOSOMAL L2 50S) protein domain (PD000953) which is seen in RL2_THEMA.Residues 50-113 are 67% similar to a (PROTEIN RIBOSOMAL L2 50S) protein domain (PD000954) which is seen in RL2_BACSU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","Wed Mar 22 14:31:42 MST 2000","Fri Dec 19 09:45:29 2003","Wed Mar 22 14:31:42 MST 2000","Fri Dec 19 09:45:29 2003","Fri Dec 19 09:45:29 2003","Fri Dec 19 09:45:29 2003","Fri Dec 19 09:45:29 2003","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Dec 19 09:45:29 2003","-71% similar to PDB:1VS9 Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements. This file, 1VS9, contains the 50S ribosome subunit. 30S ribosome subunit is in the file 2I1C (E_value = 4.7E_85);-71% similar to PDB:2HGJ Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons. This entry 2HGJ contains 50S ribosomal subunit. The 30S ribosomal subunit can be found in PDB entry 2HGI. (E_value = 4.7E_85);-71% similar to PDB:2HGQ Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex. This entry 2HGQ contains 50S ribosomal subunit. The 30S ribosomal subunit can be found in PDB entry 2HGP. (E_value = 4.7E_85);-71% similar to PDB:2HGU 70S T.Th. ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A. This entry 2HGU contains 50S ribosomal subunit. The 30S ribosomal subunit can be found in PDB entry 2HGR. (E_value = 4.7E_85);-71% similar to PDB:2J01 STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME COMPLEXED WITH MRNA, TRNA AND PAROMOMYCIN (PART 2 OF 4). THIS FILE CONTAINS THE 50S SUBUNIT FROM MOLECULE I. (E_value = 4.7E_85);","","","Residues 42 to 118 (E-value = 3.8e-39) place PG1687 in the Ribosomal_L2 family which is described as Ribosomal Proteins L2, RNA binding domain (PF00181)Residues 124 to 251 (E-value = 3.3e-75) place PG1687 in the Ribosomal_L2_C family which is described as Ribosomal Proteins L2, C-terminal domain (PF03947)","Fri Dec 19 09:45:29 2003","34541538","","","","","","1","","","PG1935" "PG1688","2023585","2023295","291","ATGGGAATCATCATTAAGCCGATTATTTCGGAAAAGATGACGGCTGTTACGGAAAAGATGTCGGAGCGTTATGGCTTCCGCGTTTCTCCTAACGCGAATAAAATAGAGATTAAGAAGGCTGTAGAGGCTATGTATAATGTGAAAGTCGAAGACGTGAACACGATGAGATATGACGGTAAGCGTAAAAACCGCTATACCAAGAGTGGACTGATTCGCGGTAAAGAGGCTTCTTTCAAAAAGGCGATTGTGACGCTTAAGAAAGGAGAAACGATCGACTTCTTCAGCAATATC","10.80","9.99","11078","MGIIIKPIISEKMTAVTEKMSERYGFRVSPNANKIEIKKAVEAMYNVKVEDVNTMRYDGKRKNRYTKSGLIRGKEASFKKAIVTLKKGETIDFFSNI","50S ribosomal protein L23","L23 binds 23S RNA.TIGR ID: PG1936","50S ribosomal protein L23","Cytoplasm","This sequence is similar to CT526 of Chlamydia trachomatis.","
InterPro
IPR001014
Family
Ribosomal L23 protein
PS00050\"[79-94]TRIBOSOMAL_L23
InterPro
IPR012677
Domain
Nucleotide-binding, alpha-beta plait
G3DSA:3.30.70.330\"[1-96]Ta_b_plait_nuc_bd
InterPro
IPR012678
Domain
Ribosomal L23 and L15e, core
SSF54189\"[1-96]TL23_L15e_core
InterPro
IPR013025
Domain
Ribosomal protein L25/L23
PD001141\"[7-97]TRibosomal_L23
PF00276\"[1-97]TRibosomal_L23
noIPR
unintegrated
unintegrated
PTHR11620\"[26-71]TPTHR11620


","BeTs to 16 clades of COG0089COG name: Ribosomal protein L23Functional Class:  JThe phylogenetic pattern of COG0089 is amtkyqvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB001014 (Ribosomal L23 protein) with a combined E-value of 2.6e-15. IPB001014 22-54","Residues 3-88 are 46% similar to a (PROTEIN RIBOSOMAL RRNA-BINDING 50S L23 CHLOROPLAST 60S) protein domain (PD001141) which is seen in RL23_THEMA.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","Wed Mar 22 14:33:16 MST 2000","Wed Mar 22 14:33:16 MST 2000","Wed Mar 22 14:33:16 MST 2000","Wed Mar 22 14:33:16 MST 2000","Wed Mar 22 14:33:16 MST 2000","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","-60% similar to PDB:1P85 Real space refined coordinates of the 50S subunit fitted into the low resolution cryo-EM map of the EF-G.GTP state of E. coli 70S ribosome (E_value = 2.6E_10);-60% similar to PDB:1P86 Real space refined coordinates of the 50S subunit fitted into the low resolution cryo-EM map of the initiation-like state of E. coli 70S ribosome (E_value = 2.6E_10);-60% similar to PDB:1VS6 Crystal structure of the bacterial ribosome from escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution. this file contains the 50s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes and is described in remark 400. (E_value = 2.6E_10);-60% similar to PDB:1VS8 Crystal structure of the bacterial ribosome from escherichia coli in complex with the antibiotic kasugamyin at 3.5a resolution. this file contains the 30s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes and is described in remark 400. (E_value = 2.6E_10);-60% similar to PDB:2AW4 Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution. This file contains the 50S subunit of one 70S ribosome. The entire crystal structure contains two 70S ribosomes and is described in remark 400. (E_value = 2.6E_10);","","","Residues 1 to 97 (E-value = 8.9e-24) place PG1688 in the Ribosomal_L23 family which is described as Ribosomal protein L23 (PF00276)","","34541539","","","","","","1","","","PG1936" "PG1689","2024229","2023603","627","ATGGAACTGAGCGTATATAATATCAAAGGAGAAGATACGGGTAAGAAAGTCGTTCTGGACGACTCGATCTTCGCGATAGAGCCTAACGACCATGCTATCTACTTGGATGTAAAGCAGTACATGGCCAACCAGCGCCAAGGTACGCACAAGGCCAAAGAGCGTAGCGAACTTTCCGGTAGTACGCGCAAGCTGATCCGTCAGAAGGGTAGCGGTGGAGCACGTCGTGGTGATATCAACTCACCCCTTCTCAGTGGCGGTGCTCGTGTTTTCGGTCCGCGTCCTCGTAACTACAGCTTCAAGCTGAACAAGAAGCTGAAGGCTTTGGCTCGTCGTTCGGCTCTGAGCTACAAAGCGAAGAACAATGAGATCATCGTCGTGGAGGACTTTAACTTCGATGCTCCCAAAACAAAGGCTTTCAAGGCTATTTCTGCCGCATTGAAGGTGGGCGAAAAGAAAGTACTCTACGTCCTTCCCGAGGTGAATAAGAATGTGTACTTGTCTGCTCGCAACCTGCCGAATACGAATTTGATTCTTGCCAATCTGATCAATACTTACACAGTGTTGGCTTCCAAGAATCTCGTGCTGACAGAGCGTTCTGTTGCCGTTGTTAATGAACTATTTAAAGCA","10.80","17.48","23194","MELSVYNIKGEDTGKKVVLDDSIFAIEPNDHAIYLDVKQYMANQRQGTHKAKERSELSGSTRKLIRQKGSGGARRGDINSPLLSGGARVFGPRPRNYSFKLNKKLKALARRSALSYKAKNNEIIVVEDFNFDAPKTKAFKAISAALKVGEKKVLYVLPEVNKNVYLSARNLPNTNLILANLINTYTVLASKNLVLTERSVAVVNELFKA","50S ribosomal protein L4","L4 binds to 23S RNA.TIGR ID: PG1937","50S ribosomal protein L4","Cytoplasm, Periplasm","This sequence is similar to CT527 of Chlamydia trachomatis.","
InterPro
IPR002136
Family
Ribosomal protein L4/L1e
PF00573\"[16-206]TRibosomal_L4
SSF52166\"[1-207]TRibosomal_L4/L1E
InterPro
IPR013005
Family
Ribosomal protein L4/L1e, bacterial like
PTHR10746\"[19-205]TRibos_L4_L1E_bac
InterPro
IPR015498
Family
Ribosomal protein L4
PTHR10746:SF2\"[19-205]TRibosomal_L4
noIPR
unintegrated
unintegrated
G3DSA:3.40.1370.10\"[1-207]TG3DSA:3.40.1370.10


","BeTs to 13 clades of COG0088COG name: Ribosomal protein L4Functional Class:  JThe phylogenetic pattern of COG0088 is amtkYqvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** BP01346 (PROTEIN RIBOSOMAL 50S L4 RRNA-BI) with a combined E-value of 3.4e-15. BP01346 52-95","Residues 50-169 are 45% similar to a (PROTEIN RIBOSOMAL L4 50S) protein domain (PD001346) which is seen in Q9Z9L3_BBBBB.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","Wed Mar 22 14:34:44 MST 2000","Wed Mar 22 14:34:44 MST 2000","Wed Mar 22 14:34:44 MST 2000","Wed Mar 22 14:34:44 MST 2000","Wed Mar 22 14:34:44 MST 2000","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","-55% similar to PDB:1DMG CRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN L4 (E_value = 1.4E_24);-51% similar to PDB:1P85 Real space refined coordinates of the 50S subunit fitted into the low resolution cryo-EM map of the EF-G.GTP state of E. coli 70S ribosome (E_value = 1.0E_19);-51% similar to PDB:1P86 Real space refined coordinates of the 50S subunit fitted into the low resolution cryo-EM map of the initiation-like state of E. coli 70S ribosome (E_value = 1.0E_19);-51% similar to PDB:1VS6 Crystal structure of the bacterial ribosome from escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution. this file contains the 50s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes and is described in remark 400. (E_value = 1.0E_19);-51% similar to PDB:1VS8 Crystal structure of the bacterial ribosome from escherichia coli in complex with the antibiotic kasugamyin at 3.5a resolution. this file contains the 30s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes and is described in remark 400. (E_value = 1.0E_19);","","","Residues 16 to 206 (E-value = 1.4e-50) place PG1689 in the Ribosomal_L4 family which is described as Ribosomal protein L4/L1 family (PF00573)","","34541540","","","","","","1","","","PG1937" "PG1690","2024846","2024232","615","ATGCCAGGTTTATTAGGAAAGAAAATCGGAATGACATCCGTATTCAGTGCCGAGGGCAAGAATCTGCCATGCACTGTTATCGAAGTTGGTCCTTGTGTGGTTACGCAAGTAAAGACTTTGGAGAAAGACGGCTATAGCGCATTGCAGCTTGGTTTTGTGGATGCAAAGGAAAAGCATACGACAAAACCTTTGGCCGGCCATTTCAAGAAAGCTAATGTAGCCCCCAAGAGACACTTGGCCGAGTTCAAGAATTTCGAAGGCGAGCACAAGCTCGGCGACGTATTGAACGTAGAGTTCTTTAGCGATGCCGACTTTGTCGATGTAGTGGGAACATCTAAAGGAAAAGGTTTCCAAGGTGTAGTAAAACGCCACGGTTTCGGTGGTGTGGGTCAGGCTACACACGGTCAGCACAATCGTTTGCGTGCTCCCGGTGCAGTCGGAGCCTGTTCGTATCCTGCCAAAGTGTTCAAAGGAACGCGTATGGCCGGTCAGATGGGTAACGAGCGCGTGACCGTGCAGAATCTGGAAGTTATTAAGGTGATGCCCGAGCACAATCTGCTCCTTGTGAAAGGTAGCGTGCCCGGTGCTAAAGGTTCAATCTTGTTAATTGAAAAG","10.30","11.77","21875","MPGLLGKKIGMTSVFSAEGKNLPCTVIEVGPCVVTQVKTLEKDGYSALQLGFVDAKEKHTTKPLAGHFKKANVAPKRHLAEFKNFEGEHKLGDVLNVEFFSDADFVDVVGTSKGKGFQGVVKRHGFGGVGQATHGQHNRLRAPGAVGACSYPAKVFKGTRMAGQMGNERVTVQNLEVIKVMPEHNLLLVKGSVPGAKGSILLIEK","50S ribosomal protein L3","L3 binds 23S RNA.TIGR ID: PG1938","50S ribosomal protein L3","Periplasm, Cytoplasm","Residues 3-203 are 50% similar to 50S ribosomal protein L3 from Mycobacterium leprae. ","
InterPro
IPR000597
Family
Ribosomal protein L3
PD001374\"[112-166]TRibosomal_L3
PF00297\"[8-204]TRibosomal_L3
PS00474\"[100-123]TRIBOSOMAL_L3
InterPro
IPR009000
Domain
Translation elongation and initiation factors/Ribosomal, beta-barrel
SSF50447\"[1-203]TTranslat_factor
noIPR
unintegrated
unintegrated
PTHR11229\"[1-204]TPTHR11229


","BeTs to 17 clades of COG0087COG name: Ribosomal protein L3Functional Class: JThe phylogenetic pattern of COG0087 is amtkYqvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB000597 (Ribosomal protein L3) with a combined E-value of 1.6e-41. IPB000597A 3-15 IPB000597B 100-125 IPB000597D 152-181","Residues 3-203 are 50% similar to a (PROTEIN RIBOSOMAL L3 50S) protein domain (PD001374) which is seen in RL3_MYCLE.","","Thu Jun 14 12:25:04 MDT 2001","","Thu Jun 14 12:25:04 MDT 2001","Thu Jun 14 12:25:04 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:25:04 MDT 2001","Thu Jun 14 12:25:04 MDT 2001","Wed Mar 22 14:36:13 MST 2000","Mon Jun 25 16:21:26 MDT 2001","Wed Mar 22 14:36:13 MST 2000","Mon Jun 25 16:21:26 MDT 2001","Thu Jun 14 12:25:04 MDT 2001","Mon Jun 25 16:21:26 MDT 2001","Mon Jun 25 16:21:26 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Jun 14 12:25:04 MDT 2001","-67% similar to PDB:1P85 Real space refined coordinates of the 50S subunit fitted into the low resolution cryo-EM map of the EF-G.GTP state of E. coli 70S ribosome (E_value = 1.5E_52);-67% similar to PDB:1P86 Real space refined coordinates of the 50S subunit fitted into the low resolution cryo-EM map of the initiation-like state of E. coli 70S ribosome (E_value = 1.5E_52);-67% similar to PDB:1VS6 Crystal structure of the bacterial ribosome from escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution. this file contains the 50s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes and is described in remark 400. (E_value = 1.5E_52);-67% similar to PDB:1VS8 Crystal structure of the bacterial ribosome from escherichia coli in complex with the antibiotic kasugamyin at 3.5a resolution. this file contains the 30s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes and is described in remark 400. (E_value = 1.5E_52);-67% similar to PDB:2AW4 Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution. This file contains the 50S subunit of one 70S ribosome. The entire crystal structure contains two 70S ribosomes and is described in remark 400. (E_value = 1.5E_52);","","","Residues 8 to 204 (E-value = 1.2e-80) place PG1690 in the Ribosomal_L3 family which is described as Ribosomal protein L3 (PF00297)","Mon Jun 25 16:21:26 MDT 2001","34541541","","","","","","1","","","PG1938" "PG1691","2025174","2024872","303","ATGAGCCAAAAGATTAGAATTAAGCTGAAGTCTTACGATTATATGCTGGTGGACAAGTCTGCCGAGAAGATCGTAAAGACGGTGAAAGCAGCCGGTGCGATGGTTAGCGGTCCTATACCTCTGCCCACGCATAAGCGGATTTTCACAGTGAACCGCTCTACGTTCGTAAACAAGAAGAGCCGTGAGCAGTTCGAACTCTCTTCATACAAGAGATTGATTGATATTTACAACTCTACTGCCAAGACTGTGGATGCTCTGATGAAATTGGAACTCCCCAGCGGTGTGGAAGTGGAAATCAAAGTT","10.70","9.22","11432","MSQKIRIKLKSYDYMLVDKSAEKIVKTVKAAGAMVSGPIPLPTHKRIFTVNRSTFVNKKSREQFELSSYKRLIDIYNSTAKTVDALMKLELPSGVEVEIKV","2025173 2024871","TIGR ID: PG1939","30S ribosomal protein S10","Cytoplasm, Periplasm","Numerous significant hits to ribosomal protein S10 in gapped BLAST; e.g. residues 3-101 are 62% similar to emb|CAB11891.1| ribosomal protein S10 of Bacillus subtilis, residues 3-101 are 62% similar to dbj|BAB03852.1| 30S ribosomal protein S10 of Bacillus halodurans, residues 3-100 are 64% similar to gb|AAD40582.1|AF115283_1 ribosomal protein S10 of Leptospira interrogans.","
InterPro
IPR001848
Family
Ribosomal protein S10
PD001272\"[12-100]TRibosomal_S10
PR00971\"[4-17]T\"[39-54]T\"[60-74]TRIBOSOMALS10
G3DSA:3.30.70.600\"[2-100]TRibosomal_S10
PTHR11700\"[1-101]TRibosomal_S10
PF00338\"[4-99]TRibosomal_S10
PS00361\"[28-43]TRIBOSOMAL_S10
SSF54999\"[4-101]TRibosomal_S10
InterPro
IPR005731
Family
Ribosomal protein S10, bacterial form
PTHR11700:SF2\"[1-101]TRibos_S10_bac
TIGR01049\"[3-101]TrpsJ_bact


","BeTs to 17 clades of COG0051COG name: Ribosomal protein S10Functional Class: JThe phylogenetic pattern of COG0051 is amtkYqvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB001848 (Ribosomal protein S10) with a combined E-value of 5.3e-23. IPB001848 13-67","Residues 3-91 are 61% similar to a (PROTEIN RIBOSOMAL S10 30S 40S MITOCHONDRION S20 S10P) protein domain (PD001272) which is seen in Q9Z9L5_BBBBB.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Mar 22 14:25:48 MST 2000","Wed Mar 28 12:48:12 MST 2001","Wed Mar 28 12:48:12 MST 2001","Wed Mar 28 12:48:12 MST 2001","Wed Mar 28 12:48:12 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 28 12:48:12 MST 2001","-74% similar to PDB:1FJG STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH THE ANTIBIOTICS STREPTOMYCIN, SPECTINOMYCIN, AND PAROMOMYCIN (E_value = 3.5E_26);-74% similar to PDB:1GIX Crystal structure of the ribosome at 5.5 A resolution. This file, 1GIX, contains the 30S ribosome subunit, three tRNA, and mRNA molecules. 50S ribosome subunit is in the file 1GIY (E_value = 3.5E_26);-74% similar to PDB:1HNW STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH TETRACYCLINE (E_value = 3.5E_26);-74% similar to PDB:1HNX STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH PACTAMYCIN (E_value = 3.5E_26);-74% similar to PDB:1HNZ STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH HYGROMYCIN B (E_value = 3.5E_26);","","","Residues 4 to 99 (E-value = 1.5e-46) place PG1691 in the Ribosomal_S10 family which is described as Ribosomal protein S10p/S20e (PF00338)","Wed Mar 28 12:48:12 MST 2001","34541542","","","","","","1","","","PG1939" "PG1692","2027313","2025193","2121","ATGGCAATTGATAAGGAATTACAGTTTACAAGAAATATCGGCATCATGGCTCACATCGATGCCGGAAAGACTACTACATCCGAGCGTATTCTGTTCTATACGGGTCTGACGCACAAGATCGGTGAGGTGCACGATGGTGCGGCTACCATGGACTGGATGGAGCAGGAGCAAGAGAGAGGTATCACGATCACCTCTGCTGCTACGACTGCGTTCTGGAACTACAACAACCAAAAGTACAAGATCAACCTGATCGACACTCCGGGACACGTGGACTTCACGGTGGAAGTGGAGCGTTCTCTCCGTATTTTGGACGGAGCCGTTGCCGCTTTCTGCGCCGTAGGTGGTGTGGAGCCTCAGAGTGAGACCGTGTGGCGTCAGGCTGAGAAATATAATGTGCCCCGTATCGGCTATGTAAACAAGATGGACCGTTCGGGTGCCAACTTCTTCGAAGTGGTACGCCAGCTTCGCGAGGTGTTGGGTGCCAATCCTTGTCCCATTCAGATTCCTATCGGAGCTGAGGAGACGTTCAAGGGAGTTGTGGATCTCGTTTCTATGAAAGCACTCGTATGGAACGATGAAACGATGGGGGCCAAGTACGATGTAGAGGATATCCCTGCCGAACTGGTGGGCGAAGCCGAAGAGTGGCGCGACAAGATGCTCGAAACATTGGCTGACTGCGATGATACGCTGATGGAAAAGTATTTCGACGATCCTTCTACGATTACGGAAGACGAAATAATAGCAGCTCTTCGCAAGGGTACGCTCGCTATGCAGATCAACCCCATGCTCTGCGGTTCTTCGTTCAAGAACAAGGGCGTACAGACACTGCTCGATGCCGTATGTAAGTTCCTGCCCAGCCCGGCAGATACTCCCACAGTGGAAGGTACGGATCCTTCTGACTCGAGTAAGGTGATAGAGCGCAAGACCTCTCCCAACGAGCCTCTCTGTGCTTTGGCGTTTAAGATTGCTACCGACCCTTACGTAGGGCGTCTTTGCTTCTTCCGCGTATATTCGGGCGAATTGCCTGCCGGTTCATACGTTTACAATGCTCGTTCTGAGAAGAAGGAGCGTATCTCTCGTCTCTTCCAGATGCACTCTAACAAGCAGAACCCCAAAGAGGTGATCGGTTGCGGTGACATCGGTGCCGGTGTAGGCTTCAAGGATATTCGTACGGGCGATACGCTTTGCGATGAGAGTCATCCTATCGTTCTCGAATCTATGGACTTCCCCGATCCGGTGATCGGTATTGCCGTGGAGCCGAAGACGCAGAAGGACCTCGATCGTCTGGGTGTAGGTTTGGCCAAGCTGGCTGAAGAAGACCCCACGTTCCGCGTTCAGACGAACGAAGATTCCGGCCAGACGGTTATCAGCGGTATGGGTGAGCTTCACCTCGATATTATCATAGACCGTCTGCGTCGTGAGTTTAAGGTGGAATGCAACCAGGGACGTCCTCAGGTTTCTTACAAGGAGGCTATCAACGATCCTGTGGAGCTTCGCGAAGTGTACAAGAAGCAGACCGGTGGTCGCGGTAAGTTTGCCGACATTATCTGTCGTGTGGAGCCTGCCGATGCCGACTTCGAAGGCGAATTGCAGTTCGTGGATGAGGTGAAGGGTGGTAATATCCCCAAAGAATTCATCCCTTCTATTCAAAAGGGTTTCCAGCGTGCCATGAAGAATGGTGTATTGGCCGGCTATCCGCTCGATCAGCTGAAGGTAACCGTAATCGACGGTTCTTTCCACCCGGTGGACTCCGACCAGTTGTCTTTTGAAATCTGTGCCCTCCAGGCGTTCAAGAATGCTTGTGAAAAAGCCCATCCTACTCTGATGGAGCCTATTATGAAACTGGAAGTGGTGACTCCCGAAGAGAGTATGGGTGATGTGATCGGCGACTTGAACAAGCGTCGCGGTCAGGTGGAAGGTATGGAAAGCAGCCGTACCGGAGCACGTATCGTAAAGGCTAAGGTGCCTCTGGCTGAGATGTTCGGCTATGTGACGGCTCTCCGTACGATAACGAGCGGTCGTGCTACGAGTACGATGACCTTCTCTCACTATTCAGAAGTGCCCTCTACCATCGCTAAGCAGGTGCTTACCGAAGCTCAGGGTCGCGTTGATTTGATCAAA","4.80","-25.11","78256","MAIDKELQFTRNIGIMAHIDAGKTTTSERILFYTGLTHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWNYNNQKYKINLIDTPGHVDFTVEVERSLRILDGAVAAFCAVGGVEPQSETVWRQAEKYNVPRIGYVNKMDRSGANFFEVVRQLREVLGANPCPIQIPIGAEETFKGVVDLVSMKALVWNDETMGAKYDVEDIPAELVGEAEEWRDKMLETLADCDDTLMEKYFDDPSTITEDEIIAALRKGTLAMQINPMLCGSSFKNKGVQTLLDAVCKFLPSPADTPTVEGTDPSDSSKVIERKTSPNEPLCALAFKIATDPYVGRLCFFRVYSGELPAGSYVYNARSEKKERISRLFQMHSNKQNPKEVIGCGDIGAGVGFKDIRTGDTLCDESHPIVLESMDFPDPVIGIAVEPKTQKDLDRLGVGLAKLAEEDPTFRVQTNEDSGQTVISGMGELHLDIIIDRLRREFKVECNQGRPQVSYKEAINDPVELREVYKKQTGGRGKFADIICRVEPADADFEGELQFVDEVKGGNIPKEFIPSIQKGFQRAMKNGVLAGYPLDQLKVTVIDGSFHPVDSDQLSFEICALQAFKNACEKAHPTLMEPIMKLEVVTPEESMGDVIGDLNKRRGQVEGMESSRTGARIVKAKVPLAEMFGYVTALRTITSGRATSTMTFSHYSEVPSTIAKQVLTEAQGRVDLIK","2027312 2025192","TIGR ID: PG1940","elongation factor G protein","Cytoplasm","PG1692 is essentially identical to a previously sequenced P.gingivalis protein in GenBank, BAA88142.Numerous significant hits to elongation factor EF-G proteins in gapped BLAST; e.g. residues 1-701 are 59% similar to gbAAD08239.1 translation elongation factor EF-G of Helicobacterpylori 26695, residues 1-702 are 57% similar to gbAAG05459.1AE004634_2 elongation factor G of Pseudomonas aeruginosa, residues 1-701 are 58% similar to embCAB75131.1 elongation factor G of Campylobacter jejuni.This sequence is similar to BT2729.","
InterPro
IPR000640
Domain
Translation elongation factor EFG/EF2, C-terminal
G3DSA:3.30.70.240\"[610-699]TTransl_elong_EFG/EF2_C
PF00679\"[607-695]TEFG_C
InterPro
IPR000795
Domain
Protein synthesis factor, GTP-binding
PR00315\"[12-25]T\"[58-66]T\"[82-92]T\"[98-109]T\"[134-143]TELONGATNFCT
PF00009\"[8-288]TGTP_EFTU
PS00301\"[51-66]TEFACTOR_GTP
InterPro
IPR004161
Domain
Translation elongation factor EFTu/EF1A, domain 2
PF03144\"[329-396]TGTP_EFTU_D2
InterPro
IPR004540
Family
Translation elongation factor EFG/EF2
TIGR00484\"[1-701]TEF-G
InterPro
IPR005225
Domain
Small GTP-binding protein domain
TIGR00231\"[8-185]Tsmall_GTP
InterPro
IPR005517
Domain
Translation elongation factor EFG/EF2, domain IV
PF03764\"[484-605]TEFG_IV
InterPro
IPR009000
Domain
Translation elongation and initiation factors/Ribosomal, beta-barrel
SSF50447\"[270-406]TTranslat_factor
InterPro
IPR009022
Domain
Elongation factor G, III and V
SSF54980\"[407-485]T\"[610-694]TEFG_III_V
InterPro
IPR014721
Domain
Ribosomal protein S5 domain 2-type fold
G3DSA:3.30.230.10\"[489-609]TRibosomal_S5_D2-type_fold
noIPR
unintegrated
unintegrated
G3DSA:2.40.30.10\"[309-406]TG3DSA:2.40.30.10
G3DSA:3.30.70.870\"[408-486]TG3DSA:3.30.70.870
G3DSA:3.40.50.300\"[6-290]TG3DSA:3.40.50.300
PTHR23115\"[1-161]T\"[246-287]T\"[308-429]TPTHR23115
PTHR23115:SF13\"[1-161]T\"[246-287]T\"[308-429]TPTHR23115:SF13
SSF52540\"[1-286]TSSF52540
SSF54211\"[481-606]TSSF54211


","BeTs to 17 clades of COG0480COG name: Translation elongation and release factors (GTPases)Functional Class: JThe phylogenetic pattern of COG0480 is amtkYqVCEbRHujgpOLinxNumber of proteins in this genome belonging to this COG is 3","***** IPB000795 (GTP-binding elongation factor) with a combined E-value of 1e-24. IPB000795A 12-27 IPB000795B 84-115 IPB000795C 459-483***** IPB000178 (Initiation factor 2) with a combined E-value of 5.8e-06. IPB000178C 81-127","Residues 231-379 are 53% similar to a (PROTEIN GTP-BINDING FACTOR ELONGATION BIOSYNTHESIS G) protein domain (PD000509) which is seen in EFG_THETH.Residues 451-686 are 56% similar to a (PROTEIN GTP-BINDING BIOSYNTHESIS ELONGATION FACTOR EF-2) protein domain (PD000296) which is seen in EFG_MYCTU.Residues 382-450 are 63% similar to a (ELONGATION FACTOR PROTEIN BIOSYNTHESIS GTP-BINDING G) protein domain (PD000980) which is seen in EFG_BACSU.Residues 161-230 are 64% similar to a (ELONGATION FACTOR PROTEIN BIOSYNTHESIS GTP-BINDING G) protein domain (PD002654) which is seen in EFG_HELPY.Residues 286-404 are 27% similar to a (PROTEIN GTP-BINDING PUTATIVE TYPA/BIPA HOMOLOG 5') protein domain (PD103945) which is seen in O06563_MYCTU.Residues 216-442 are 24% similar to a (PROTEIN BIOSYNTHESIS GTP-BINDING RESISTANCE ANTIBIOTIC) protein domain (PD002777) which is seen in TETQ_PRERU.Residues 77-379 are 26% similar to a (ELONGATION FACTOR EF-G ELONGATION) protein domain (PD125682) which is seen in Q55421_SYNY3.Residues 11-61 are 92% similar to a (PROTEIN GTP-BINDING FACTOR ELONGATION BIOSYNTHESIS TU) protein domain (PD000122) which is seen in EFG_HAEIN.Residues 22-183 are 31% similar to a (PROTEIN GTP-BINDING LIPOPROTEIN PRENYLATION RAS-RELATED) protein domain (PD000015) which is seen in LEPA_BORBU.Residues 62-156 are 64% similar to a (PROTEIN GTP-BINDING FACTOR BIOSYNTHESIS ELONGATION TU) protein domain (PD000134) which is seen in EFG_HAEIN.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Mon Mar 26 10:15:15 MST 2001","Wed Mar 22 14:27:07 MST 2000","Mon Jul 28 16:33:18 2008","Mon Mar 26 10:14:15 MST 2001","Mon Mar 26 10:14:15 MST 2001","Mon Jul 28 16:33:18 2008","yes","Fri Feb 20 15:41:32 MST 1998","There are five proteins with significant similarity to PG1692:PG0832, translation elongation factor G protein, (32% similar)PG0188, translation elongation factor G protein, (residues 2-505 are 27% similar)PG1097, GTP-binding protein (possible membrane protein), (residues 11-187 and 243-489 are 36 and 24% similar)PG0553, GTP-binding elongation factor family protein, (residues 5-151, 304-518 and 610-684 are 24-36% similar) PG0353, elongation factor Tu, (residues 12-256 are 25% similar).","Mon Mar 26 13:06:28 2001","Mon Jul 28 16:33:18 2008","-73% similar to PDB:1DAR ELONGATION FACTOR G IN COMPLEX WITH GDP (E_value = );-73% similar to PDB:1ELO ELONGATION FACTOR G WITHOUT NUCLEOTIDE (E_value = );-73% similar to PDB:1KTV Crystal Structure of Elongation Factor G Dimer Without Nucleotide (E_value = );-73% similar to PDB:1EFG THE CRYSTAL STRUCTURE OF ELONGATION FACTOR G COMPLEXED WITH GDP, AT 2.7 ANGSTROMS RESOLUTION (E_value = );-73% similar to PDB:1JQM Fitting of L11 protein and elongation factor G (EF-G) in the cryo-em map of e. coli 70S ribosome bound with EF-G, GDP and fusidic acid (E_value = );","","","Residues 8 to 288 (E-value = 1.9e-102) place PG1692 in the GTP_EFTU family which is described as Elongation factor Tu GTP binding domain (PF00009)Residues 329 to 396 (E-value = 3.4e-19) place PG1692 in the GTP_EFTU_D2 family which is described as Elongation factor Tu domain 2 (PF03144)Residues 484 to 605 (E-value = 1.4e-57) place PG1692 in the EFG_IV family which is described as Elongation factor G, domain IV (PF03764)Residues 607 to 695 (E-value = 2.1e-44) place PG1692 in the EFG_C family which is described as Elongation factor G C-terminus (PF00679)","Fri Dec 19 09:46:55 2003","34541543","","","","","","1","","","PG1940" "PG1693","2027802","2027329","474","ATGAGAAAAGCAAAACCTAAAAAAAGACAGATCCTGCCGGATCCCGTCTATGGTGATGTGAGGGTGACTAAGTTCGTTAATCACCTAATGTATGATGGAAAGAAGAACACAGCTTTCAGTATCTTCTACGGTGCTTTGGACATCGTGAAGACGAAGCACTCAAACGAAGAGAAGTCTGCCCTCGAGATTTGGAAGGCGGCTCTCGATAATATCACTCCTCAGGTAGAAGTGAAGAGCCGCCGTATCGGTGGTGCTACCTTCCAGGTGCCGACGGAAATCCGTCCCGAGCGCAAGGAGTCGATCTCTATGAAGAATCTTATCCTTTATGCCCGTAAGCGTGGTGGAAAGACTATGGCCGATAAATTGGCTGCTGAGATAGTAGACGCATTTAACAATCAAGGCGCAGCTTTCAAACGTAAGGAAGATATGCACCGCATGGCCGAGGCTAACCGCGCATTCGCCCACTTCAGATTC","10.90","14.96","18082","MRKAKPKKRQILPDPVYGDVRVTKFVNHLMYDGKKNTAFSIFYGALDIVKTKHSNEEKSALEIWKAALDNITPQVEVKSRRIGGATFQVPTEIRPERKESISMKNLILYARKRGGKTMADKLAAEIVDAFNNQGAAFKRKEDMHRMAEANRAFAHFRF","2027801 2027328","TIGR ID: PG1941","30S ribosomal protein S7","Cytoplasm, Periplasm","Numerous significant hits to ribosomal protein S7 in gapped BLAST; e.g. residues 1-158 are 54% similar to emb|CAB75130.1| 30S ribosomal protein S7 of Campylobacter jejuni, residues 1-158 are 55% similar to gb|AAF30937.1|AE002151_3 ribosomal protein S7 of Ureaplasma urealyticum, residues 2-158 are 52% similar to gb|AAK25163.1| ribosomal protein S7 of Caulobacter crescentus.","
InterPro
IPR000235
Family
Ribosomal protein S7
PD000817\"[22-144]TRibosomal_S7
G3DSA:1.10.455.10\"[5-158]TRibosomal_S7
PIRSF002122\"[14-158]TRibosomal_S7
PTHR11205\"[8-158]TRibosomal_S7
PF00177\"[1-151]TRibosomal_S7
SSF47973\"[1-151]TRibosomal_S7
InterPro
IPR005717
Family
Ribosomal protein S7, bacterial and organelle form
TIGR01029\"[2-158]TrpsG_bact


","BeTs to 15 clades of COG0049COG name: Ribosomal protein S7Functional Class: JThe phylogenetic pattern of COG0049 is amtkYQvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB000235 (Ribosomal protein S7) with a combined E-value of 1.2e-36. IPB000235A 55-102 IPB000235B 125-151","Residues 22-158 are 53% similar to a (PROTEIN RIBOSOMAL S7 30S) protein domain (PD000817) which is seen in RS7_BORBU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Mar 22 14:38:03 MST 2000","Wed Mar 28 13:19:52 MST 2001","Wed Mar 28 13:19:52 MST 2001","Wed Mar 28 13:19:52 MST 2001","Wed Mar 28 13:19:52 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 28 13:19:52 MST 2001","-75% similar to PDB:1P6G Real space refined coordinates of the 30S subunit fitted into the low resolution cryo-EM map of the EF-G.GTP state of E. coli 70S ribosome (E_value = 3.7E_41);-75% similar to PDB:1P87 Real space refined coordinates of the 30S subunit fitted into the low resolution cryo-EM map of the initiation-like state of E. coli 70S ribosome (E_value = 3.7E_41);-75% similar to PDB:1VS5 Crystal structure of the bacterial ribosome from escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution. this file contains the 30s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes and is described in remark 400. (E_value = 3.7E_41);-75% similar to PDB:1VS7 Crystal structure of the bacterial ribosome from escherichia coli in complex with the antibiotic kasugamyin at 3.5a resolution. this file contains the 30s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes and is described in remark 400. (E_value = 3.7E_41);-75% similar to PDB:2AVY Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution. This file contains the 30S subunit of one 70S ribosome. The entire crystal structure contains two 70S ribosomes and is described in remark 400. (E_value = 3.7E_41);","","","Residues 1 to 151 (E-value = 2.2e-69) place PG1693 in the Ribosomal_S7 family which is described as Ribosomal protein S7p/S5e (PF00177)","Wed Mar 28 13:19:52 MST 2001","34541544","","","","","","1","","","PG1941" "PG1694","2028443","2028042","402","ATGCCTACAATTCAACAGTTGGTTAGAAAGGGTCGTGAATCTTTCGCGGATAAGAGCAAATCGCCGGCATTGAATTCGTGCCCGCAGCGTCGCGGCGTTTGTGTGCGCGTTTATACGACTACGCCCAAGAAGCCGAATTCGGCTATGCGTAAGGTGGCGCGTGTGCGTCTGACGAATTCCAAAGAAGTCAATGCCTACATCCCCGGAGAGGGTCACAACTTGCAGGAACACAGCATCGTGCTGGTTCGTGGAGGTCGTGTGAAGGACTTGCCCGGTGTGCGCTATCACATTGTTCGTGGCACGCTCGATACAGCAGGTGTGAATGGCCGTACGCAGCGTCGTTCCAAATACGGTGCCAAGCGTCCGAAGCCCGGACAGGCTCCTGCCGCTAAAGGTAAGAAG","11.90","23.61","14753","MPTIQQLVRKGRESFADKSKSPALNSCPQRRGVCVRVYTTTPKKPNSAMRKVARVRLTNSKEVNAYIPGEGHNLQEHSIVLVRGGRVKDLPGVRYHIVRGTLDTAGVNGRTQRRSKYGAKRPKPGQAPAAKGKK","2028442 2028041","TIGR ID: PG1942","30S ribosomal protein S12","Periplasm, Cytoplasm, Extracellular","Numerous significant hits to ribosomal protein S12 in gapped BLAST; e.g. residues 1-117 are 78% similar to pir||S04427 ribosomal protein S12 of Synechococcus sp. (PCC 6301), residues 1-117 are 81% similar to dbj|BAA57884.1| 30S ribosomal protein S12 of Chlorella vulgaris, residues 1-117 are 77% similar to gb|AAA84155.1| ribosomal protein rps12 of Chlamydomonas reinhardtii.","
InterPro
IPR005679
Family
Ribosomal protein S12, bacterial and chloroplast form
PR01034\"[27-42]T\"[42-57]T\"[58-77]T\"[77-94]T\"[94-110]T\"[110-122]TRIBOSOMALS12
PTHR11652:SF1\"[1-127]TRibosom_S12_bac
TIGR00981\"[1-124]TrpsL_bact
InterPro
IPR006032
Family
Ribosomal protein S12/S23
PTHR11652\"[1-127]TRibosomal_S12_23
PF00164\"[2-123]TRibosomal_S12
PS00055\"[43-50]TRIBOSOMAL_S12
InterPro
IPR012340
Domain
Nucleic acid-binding, OB-fold
G3DSA:2.40.50.140\"[1-132]TOB_NA_bd_sub
noIPR
unintegrated
unintegrated
SSF50249\"[2-126]TNucleic_acid_OB


","BeTs to 17 clades of COG0048COG name: Ribosomal protein S12Functional Class: JThe phylogenetic pattern of COG0048 is amtkYQvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB000230 (Ribosomal protein S12) with a combined E-value of 2.5e-37. IPB000230 65-100","Residues 24-117 are 85% similar to a (PROTEIN RIBOSOMAL S12 30S MITOCHONDRION MITOCHONDRIAL) protein domain (PD000576) which is seen in RR12_CHLVU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Mar 22 14:39:07 MST 2000","Wed Mar 28 13:27:00 MST 2001","Wed Mar 28 13:27:00 MST 2001","Wed Mar 28 13:27:00 MST 2001","Wed Mar 28 13:27:00 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 28 13:27:00 MST 2001","-79% similar to PDB:2F4V 30S ribosome + designer antibiotic (E_value = 3.9E_45);-79% similar to PDB:2HGI Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons. This entry 2HGI contains 30S ribosomal subunit. The 50S ribosomal subunit can be found in PDB entry 2HGJ. (E_value = 3.9E_45);-79% similar to PDB:2HGP Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex. This entry 2HGP contains 30S ribosomal subunit. The 50S ribosomal subunit can be found in PDB entry 2HGQ. (E_value = 3.9E_45);-79% similar to PDB:2HGR 70S T.Th. ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A. This entry 2HGr contains 30S ribosomal subunit. The 50S ribosomal subunit can be found in PDB entry 2HGU. (E_value = 3.9E_45);-79% similar to PDB:2I1C Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements. This file, 2I1C, contains the 30S ribosome subunit, two tRNA, and mRNA molecules. 50S ribosome subunit is in the file 1VS9 (E_value = 3.9E_45);","","","Residues 3 to 123 (E-value = 5.7e-77) place PG1694 in the Ribosomal_S12 family which is described as Ribosomal protein S12 (PF00164)","Wed Mar 28 13:27:00 MST 2001","34541545","","","","","","1","","","PG1942" "PG1694.1","2029223","2028867","357","TTGCTGGGACTACAAGCAGCTATTCCTCTGCTCTTGGTGGCGGAGCTTCTGGCGGACAATCCTCGTTGTGGTCTATTGCTTGCTCTTCTTGGCTCTGACGGCTTCGCTGATTGCGGTAGTTATTGTGGCGATCGAGGCTGTCGGTACAGCTTCATAGCTACCCCTCTCGCTCTTGGGCGGATATATTCCGATCTGATTTTCTCGAACCATAATTGCTCTGATTGCGGCGCGTGTTTTCGGGAAAAGTCTTATGAGAATTTTTTCCTCGTGGCGCGAGAATTTTTTACTTCCCGAACCAAAACGAAAAAGTTCCCGCGCCACGTTTTGCGGAGCATCGAAACAGAAAATTGTGGCGCG","","","13090","LLGLQAAIPLLLVAELLADNPRCGLLLALLGSDGFADCGSYCGDRGCRYSFIATPLALGRIYSDLIFSNHNCSDCGACFREKSYENFFLVAREFFTSRTKTKKFPRHVLRSIETENCGA","","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm, Outer membrane","No hit found in gapped BLAST.","
InterPro
IPR012456
Family
Protein of unknown function DUF1661
PF07877\"[90-116]TDUF1661
noIPR
unintegrated
unintegrated
signalp\"[1-18]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Tue Mar 6 18:19:01 MST 2001","","Tue Mar 6 18:19:01 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No significant paralogs found using local BLAST.","Tue Mar 6 18:19:01 MST 2001","Tue Mar 6 18:19:01 MST 2001","-53% similar to PDB:1REO L-amino acid oxidase from Agkistrodon halys pallas (E_value = );-53% similar to PDB:1TDK L-amino acid oxidase from Agkistrodon halys in complex with suicide substrate L-vinylglycine (E_value = );-53% similar to PDB:1TDN L-amino acid oxidase from Agkistrodon halys in complex with L-leucine (E_value = );-53% similar to PDB:1TDO L-amino acid oxidae from Agkistrodon halys in complex with L-phenylalanine (E_value = );-53% similar to PDB:1F8R CRYSTAL STRUCTURE OF L-AMINO ACID OXIDASE FROM CALLOSELASMA RHODOSTOMA COMPLEXED WITH CITRATE (E_value = );","","","No significant hits to the Pfam 11.0 database","Tue Mar 6 18:19:01 MST 2001","","","","","","","1","","","" "PG1695","2030353","2029070","1284","ATGCAAACGAGTAGCAAAACGAAGAAAAAAATGGAAGGTTCGCGCGATAGTACTTCGAAGAAACAGAAAAACGGGGAGCATGGGCATTCGGAGAGAAAAATGGCCAACTCATTGCAGATCCTCATGCTTGCATCGCTCCTATGGTTGGCAATAGAAGATTTGGCCACTTCGGGACAATGGGGAATATCTGCCATTACCGGGCTGGCTTTTTGGGCAATCCTACGGAAGCGCAGACTACTGCCAAGAAAGATCGATCAGCGGTTGCAATCACTTCTCTTTCCCCTTCGGGTACGAATCCGCGCATTCGAGTTGAGACTGATGCGTGGCAGAGCGACTCCACCTGCAGACCCATACATACATATATGCCAAAACTGCGGAGATGGATATACGGGCAATTTCTGCAACCGCTGCGGACAAACCTCTCGCACCGGACGGTATCACTTCCGGCAGATGATCCGAAATGTGATAGGCGGCTTCACCAATATCGACAGCGGTTTCGGGCGTACTATCGTGGAGCTGCTCTACCGCCCGGGTTATTTGATACGGGACTTTATCGGTGGCAAGAGGGTTGTCTACTTCCGTCCCTTTCAGGCCCTTTTCGTGCTGGCCTCTCTGTACATCATCTTTGCACAACTGATCGGACCTGATCCCTTGCAGAAAAAGCCCATTGGCGAAGAGCTTACGCGTCAAGAGTATCGGATGGATCAAAAAGAAATATCCTCCTTGCAAAAGGAGAATAAGGCAGTCGGCAGCGATAGCGGAGAAATGATTGCCGAGCGACACACGGGGAGAAGAGCCTTTTTTTACAAACAAATGAGGTTTGTCACCGAGCAGAAAAATAGGTTGAAGTCCCTCCCTTTCTTTTCAAGAATATGGAGCCTGCTGATGGAGTGGTTTCAAGGCAACAAGGCTGTCAGGATCATCAGTATTCTTCCCATTCTCGCCGTGAGTACGAAAGCGGCTTTCCGACAAAAAGGAGCCGGAGCATATAATCTGACGGAGCACATTATCGCTCAGGCGTACATAGCCTGCCAGCTATTGTTGCTGAACGTTCTCGCCCTACCTTTCTACAGCGATGCCCGGGTGGGGTCGCTATACGGGCTACCTGCATTGCTCCTATTCCTTTTGTTTTGCTGGGACTACAAGCAGCTATTCCTCTGCTCTTGGTGGCGGAGCTTCTGGCGGACAATCCTCGTTGTGGTCTATTGCTTGCTCTTCTTGGCTCTGACGGCTTCGCTGATTGCGGTAGTTATTGTGGCGATCGAGGCTGTCGGTACAGCTTCA","10.90","31.07","48880","MQTSSKTKKKMEGSRDSTSKKQKNGEHGHSERKMANSLQILMLASLLWLAIEDLATSGQWGISAITGLAFWAILRKRRLLPRKIDQRLQSLLFPLRVRIRAFELRLMRGRATPPADPYIHICQNCGDGYTGNFCNRCGQTSRTGRYHFRQMIRNVIGGFTNIDSGFGRTIVELLYRPGYLIRDFIGGKRVVYFRPFQALFVLASLYIIFAQLIGPDPLQKKPIGEELTRQEYRMDQKEISSLQKENKAVGSDSGEMIAERHTGRRAFFYKQMRFVTEQKNRLKSLPFFSRIWSLLMEWFQGNKAVRIISILPILAVSTKAAFRQKGAGAYNLTEHIIAQAYIACQLLLLNVLALPFYSDARVGSLYGLPALLLFLLFCWDYKQLFLCSWWRSFWRTILVVVYCLLFLALTASLIAVVIVAIEAVGTAS","2030352 2029069","TIGR ID: PG1943","hypothetical protein","Inner membrane, Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
noIPR
unintegrated
unintegrated
tmhmm\"[32-50]?\"[56-74]?\"[190-210]?\"[304-322]?\"[337-357]?\"[363-378]?\"[399-421]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","-56% similar to PDB:1P6G Real space refined coordinates of the 30S subunit fitted into the low resolution cryo-EM map of the EF-G.GTP state of E. coli 70S ribosome (E_value = );-56% similar to PDB:1P87 Real space refined coordinates of the 30S subunit fitted into the low resolution cryo-EM map of the initiation-like state of E. coli 70S ribosome (E_value = );-56% similar to PDB:1VS5 Crystal structure of the bacterial ribosome from escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution. this file contains the 30s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes and is described in remark 400. (E_value = );-56% similar to PDB:1VS7 Crystal structure of the bacterial ribosome from escherichia coli in complex with the antibiotic kasugamyin at 3.5a resolution. this file contains the 30s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes and is described in remark 400. (E_value = );-56% similar to PDB:2AVY Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution. This file contains the 30S subunit of one 70S ribosome. The entire crystal structure contains two 70S ribosomes and is described in remark 400. (E_value = );","","","No significant hits to the Pfam 11.0 database","","34541546","","","","","","1","","","PG1943" "PG1696","2030559","2031815","1257","ATGAAAAGACTTCACTGTACGTTTAATCCCAAAAGTCAGACCGTCGATGTCAGTCTCCGGCTGCCTCCCTCCAAGAGCGAATGGATCCGGCTGTTGCTGCTCCGTGCCATGTCGGGAGAGGTACTGGCCCCCTTGGAGGGAGATGCTCCCACCGATGTGCGGACAGTGCACCGGATTTTGACTTCGGATATATCCGATGAGGTAAACGTAAGGGATGCGGGTACTGCTATGCGCTTTCTGACGGCCTACATGGCGCGCTTTGCCTCCCGGCCTGTACGGTTGTATGGTACGGAGCGGATGTGTGCACGTCCGATCCGTCCTTTGGTGGAGGCTCTTCGCTCTTTGGGCGCGGATGTCATCTACGAAAGAGTAGAGGATTTCCCTCCTCTGCTGATACGGCCGGCAGCCATGCGTGGAGGCACTGTCTGTGTGGATGCAGGTGTCAGCTCGCAGTTTGTCAGTGCTCTCTTGCTGATCGCTCCTACGCTCAGAGGGGGGCTGTCGATCAAGCTGGAGAACAGGGAGGTCTCGGCCCCCTATACCGATATGACTTGCCGTCTCCTCACGGCTTTCGGCATAGAAGTCGAGCGCAGCGAAGACAGCATAACGGTTGGGGAACGGCCTTTCGTGGCTCCGACGGAATGGTATCCGTCGGCCGATTGGTCTGCTGCCGGCTATATATATAATATGGTAGCGGTGGGAGAGCTTTCCGGTAGCGTAAGCCTTCCGGGCTTGCTTCCGCCGGAAGAGAGTATGCAGGCCGACAGCCGAGCAGCTACTCTGTTCGGACGGTTGGGAGTCGTCACAGAGAAGACCGATAGCGGTATAACTCTCAGTTATTCGCCGGTGAGGTGTACCGATGATTTCGGCACGGAAGATGTCCGAGATTGTCCCGACCTGGTGCCGACTTTAGCTGTATGTTGTTTGCTGAAGAGGGTACCGTTCTGCCTGACGGGCGTAGGCCATTTGAGGCTGAAAGAGTGCGACCGCTTGGCGGCTATCTGTACCGAAGCACGCAAGCTGGGCTACGTTGTTCGATCGGACAAGGATGCTCTCCTTTGGGATGGAGAGCGATGTACGCCGGAAGAGCTGCCTGTGATCAGGGTCTACGACGATCATCGTATGGCCATGGCCTTTGCAGCGGCTGCCGTATTGTCGAAGAAGGGTGTGATGATAGAGGATGCCGGCGTAGTCGGTAAGAGTTTCCCCGGATTCTTTAGTGTGAGTCGCCTTTTGGGATTCGACGGAGAGGAAATA","5.30","-6.57","45835","MKRLHCTFNPKSQTVDVSLRLPPSKSEWIRLLLLRAMSGEVLAPLEGDAPTDVRTVHRILTSDISDEVNVRDAGTAMRFLTAYMARFASRPVRLYGTERMCARPIRPLVEALRSLGADVIYERVEDFPPLLIRPAAMRGGTVCVDAGVSSQFVSALLLIAPTLRGGLSIKLENREVSAPYTDMTCRLLTAFGIEVERSEDSITVGERPFVAPTEWYPSADWSAAGYIYNMVAVGELSGSVSLPGLLPPEESMQADSRAATLFGRLGVVTEKTDSGITLSYSPVRCTDDFGTEDVRDCPDLVPTLAVCCLLKRVPFCLTGVGHLRLKECDRLAAICTEARKLGYVVRSDKDALLWDGERCTPEELPVIRVYDDHRMAMAFAAAAVLSKKGVMIEDAGVVGKSFPGFFSVSRLLGFDGEEI","2030510 2031814","EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) catalyzes the sixth step in the biosynthesis from chorismate of the aromatic amino acids (the shikimate pathway).From Prosite PDOC00097: TIGR ID: PG1944","3-phosphoshikimate-1-carboxyvinyltransferase","Cytoplasm","Numerous hits with gapped BLAST to 3-phosphoshikimates; e.g. residues 65-406 are 35% similar to 3-phosphoshikimate (AL138598) of Streptomyces coelicolor, residues 15-406 are 33% similar to 3-phosphoshikimate (X82415) of Klebsiella pneumoniae, residues 15-406 are 32% similar to 3-phosphoshikimate (AE000193) of E. coli, residues 72-412 are 28% similar to phosphoshikimate 1-carboxyl vinyltransferase gi|8469105| of Chlamydia trachomatis.","
InterPro
IPR001986
Domain
3-phosphoshikimate 1-carboxyvinyltransferase
PD001867\"[15-406]TEPSP_synth
G3DSA:3.65.10.10\"[201-416]TEPSP_synthase
PF00275\"[9-409]TEPSP_synthase
PS00885\"[324-342]?EPSP_SYNTHASE_2
InterPro
IPR013792
Domain
RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta
SSF55205\"[4-416]TRNA3'_cycl/enolpyr_transf_A/B
noIPR
unintegrated
unintegrated
PIRSF000505\"[6-419]TEPSPS
PTHR21090\"[57-415]TPTHR21090
PTHR21090:SF3\"[57-415]TPTHR21090:SF3


","BeTs to 12 clades of COG0128COG name: 5-enolpyruvylshikimate-3-phosphate synthaseFunctional Class: EThe phylogenetic pattern of COG0128 is amt-yqvcebrhuj----in-Number of proteins in this genome belonging to this COG is 1","***** IPB001986 (EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)) with a combined E-value of 2.1e-61. IPB001986A 17-47 IPB001986B 68-80 IPB001986C 93-119 IPB001986D 139-161 IPB001986E 173-193 IPB001986F 209-235 IPB001986H 294-348 IPB001986I 369-381","Residues 15-406 are 30% similar to a (TRANSFERASE SYNTHASE 1-CARBOXYVINYLTRANSFERASE EPSP) protein domain (PD001867) which is seen in AROA_KLEPN.","","Thu Jun 14 12:25:32 MDT 2001","","Thu Jun 14 12:25:32 MDT 2001","Thu Jun 14 12:25:32 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:25:32 MDT 2001","Thu Jun 14 12:25:32 MDT 2001","","Mon Jun 25 16:18:57 MDT 2001","Fri Apr 7 14:01:32 MDT 2000","Mon Jun 25 16:18:57 MDT 2001","Wed Feb 21 15:25:03 MST 2001","Mon Jun 25 16:18:57 MDT 2001","Mon Jun 25 16:18:57 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Fri Apr 7 14:01:32 MDT 2000","Mon May 21 17:49:37 MDT 2001","-44% similar to PDB:1G6S STRUCTURE OF EPSP SYNTHASE LIGANDED WITH SHIKIMATE-3-PHOSPHATE AND GLYPHOSATE (E_value = 1.5E_33);-44% similar to PDB:1G6T STRUCTURE OF EPSP SYNTHASE LIGANDED WITH SHIKIMATE-3-PHOSPHATE (E_value = 1.5E_33);-44% similar to PDB:1X8R EPSPS liganded with the (S)-phosphonate analog of the tetrahedral reaction intermediate (E_value = 1.5E_33);-44% similar to PDB:1X8T EPSPS liganded with the (R)-phosphonate analog of the tetrahedral reaction intermediate (E_value = 1.5E_33);-44% similar to PDB:2AA9 EPSP synthase liganded with shikimate (E_value = 1.5E_33);","","","Residues 11 to 409 (E-value = 2.3e-49) place PG1696 in the EPSP_synthase family which is described as EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) (PF00275)","Mon Jun 25 16:18:57 MDT 2001","34541547","","","","","","1","","","PG1944" "PG1697","2031840","2032280","441","ATGAGCAACATCTTGATATTGATAATCGGCGTACTCGTTTTGGGGCTTGTAGCCGCCCTGACCGAGATCCGCCATTCGCACAAGCGAAGGGCTGCCGAGGCCAAGGGAGAGTCGCTTCCGGAGGAGCCTGTACGAGTGGTTCCGCCGGGGTGTTGCGGTATGCATATCACTTGCGAGAAGGACAGCCTGCTGACAGCCGTGAGCAAGAGCATCGTCTACTATGACGATGAGGAACTGGATCGCTATGCCGGCGTACTTCCGGAGGAATATAACACCGAAGCCGTCGAAGAATTCGAGGAGATCCTTTCCACGCTCCAAGAGGAAGAGGTGCCGTCTTGGATTCGAAGCCTCCAGATGCGACAGATACAAATGCCCATATCCATCAAGGAACAAGCTCTTTTTATCGTATCCGAACACCGTATCCAACACAGACACGATGAT","4.70","-10.69","16705","MSNILILIIGVLVLGLVAALTEIRHSHKRRAAEAKGESLPEEPVRVVPPGCCGMHITCEKDSLLTAVSKSIVYYDDEELDRYAGVLPEEYNTEAVEEFEEILSTLQEEEVPSWIRSLQMRQIQMPISIKEQALFIVSEHRIQHRHDD","2031839 2032279 [Shorter 2197 221 99]","TIGR ID: PG1945","hypothetical protein","Cytoplasm, Periplasm","No hit found in gapped BLAST.","
InterPro
IPR013090
Active_site
Phospholipase A2, active site
PS00118\"[51-58]?PA2_HIS


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","-51% similar to PDB:2HBJ Structure of the yeast nuclear exosome component, Rrp6p, reveals an interplay between the active site and the HRDC domain (E_value = );-51% similar to PDB:2HBK Structure of the yeast nuclear exosome component, Rrp6p, reveals an interplay between the active site and the HRDC domain; Protein in complex with Mn (E_value = );-51% similar to PDB:2HBL Structure of the yeast nuclear exosome component, Rrp6p, reveals an interplay between the active site and the HRDC domain; Protein in complex with Mn, Zn, and AMP (E_value = );-51% similar to PDB:2HBM Structure of the yeast nuclear exosome component, Rrp6p, reveals an interplay between the active site and the HRDC domain; Protein in complex with Mn, Zn, and UMP (E_value = );-47% similar to PDB:1AS4 CLEAVED ANTICHYMOTRYPSIN A349R (E_value = );","","","No significant hits to the Pfam 11.0 database","","34541548","","","","","","1","","","PG1945" "PG1698","2032276","2033079","804","ATGATTGAAGCACTACAGTACGGATTCTTTCGCAACGCTATCGCGGGCAGTCTGCTCACAGCCATTGTGTGCGGTCTGCTCGGCTCTTATGTAGTGGCTCGGCGGATGGTATTCGTCAGTGGGGGGATTACACATGCTTCTTTCGGCGGTATCGGGTTGGGGCTTTATCTGGGGATCAATCCTTTCTTGTCCGCTGCCGTTTTCGCCGTGCTCTCCGCTCTGGGCGTGCAGGGTGTGACGCGAGCCGGACTCCTCCGAGAGGATTCGGCCATTGCAGCTTTTTGGTCTTTGGGTATGGCACTGGGTACCCTTTTTATCGCACTCACGCCGGGCTACAGTACGGGATTGTCCTCTTTCTTGTTCGGCAATATCCTGCTCGTTTCACACACGGATTTGTTGCTCCTCGCGCTTATGGCTTTGGTGATGATCGCCGTATTCGTATTCGGATATCGTACGATCCTCTACACGGCTTTCGATCCTGATTTTGCAAGCACGCGAGGAATTAGGGTTCACCTCGTGGAGATGCTTATGTCCGTGGCTGTGGCTGTGGGTATTGTGCTCAGTATCCGTTTGGTGGGTATCATGCTACTGATGTCGCTCCTGACCCTTCCTCAGAGCATCATGAATCTTTTCACTTCGCACTTCTCTTCGATCCTGTTCGGTTCTGTAATCTTGGCGGCTTTGGCAGCCTTCACGGGTCTCTGGGGCAGTTATAGGTTGGGGATCCCTTCCGGAGCCTTCATCATTCTGGTGCTGGTGGCCTTGTTCCTTTTAGCCAAAACGATTAAGTCCTTTGTCCATGCG","10.60","6.13","28309","MIEALQYGFFRNAIAGSLLTAIVCGLLGSYVVARRMVFVSGGITHASFGGIGLGLYLGINPFLSAAVFAVLSALGVQGVTRAGLLREDSAIAAFWSLGMALGTLFIALTPGYSTGLSSFLFGNILLVSHTDLLLLALMALVMIAVFVFGYRTILYTAFDPDFASTRGIRVHLVEMLMSVAVAVGIVLSIRLVGIMLLMSLLTLPQSIMNLFTSHFSSILFGSVILAALAAFTGLWGSYRLGIPSGAFIILVLVALFLLAKTIKSFVHA","2032059 2033078 [Bad Olap 2195 221 0]","TIGR ID: PG1946","ABC transporter; metal transport","Inner membrane, Extracellular","Numerous significant hits in gapped BLAST; e.g. residues 1-263 are 43% similar to gb|AAB85112.1| manganese transport system membrane protein of Methanothermobacter thermautotrophicus, residues 1-258 are 38% similar to emb|CAB72625.1| ABC transporter integral membrane protein of Campylobacter jejuni, residues 17-252 are 35% similar to gb|AAF38080.1| ABC transporter, permease protein of Chlamydophila pneumoniae AR39.","
InterPro
IPR001626
Family
ABC-3
PF00950\"[6-263]TABC-3
noIPR
unintegrated
unintegrated
SSF81345\"[1-257]TSSF81345


","BeTs to 10 clades of COG1108COG name: ABC-type Mn/Zn transport systems, ATPase componentFunctional Class: PThe phylogenetic pattern of COG1108 is a-tk-QvCeB-H-----LINxNumber of proteins in this genome belonging to this COG is 1","***** PF00950 (ABC 3 transport family) with a combined E-value of 2.4e-35. PF00950A 20-66 PF00950B 69-107 PF00950C 218-260 PF00950C 35-77","Residues 151-245 are 31% similar to a (PROTEIN MEMBRANE TRANSPORT TRANSMEMBRANE) protein domain (PD002769) which is seen in O26706_METTH.Residues 27-131 are 44% similar to a (PROTEIN MEMBRANE TRANSPORT TRANSMEMBRANE) protein domain (PD186109) which is seen in O26706_METTH.","","Thu Jun 14 12:25:42 MDT 2001","","Thu Jun 14 12:25:42 MDT 2001","Thu Jun 14 12:25:42 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:25:42 MDT 2001","Thu Jun 14 12:25:42 MDT 2001","","Mon Jun 25 16:11:21 MDT 2001","Wed Mar 22 12:53:55 MST 2000","Mon Jun 25 16:10:50 MDT 2001","Wed Mar 28 13:34:52 MST 2001","Fri Jun 15 22:19:42 MDT 2001","Fri Jun 15 22:19:42 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 28 13:34:52 MST 2001","-52% similar to PDB:2NPC An unusual twin-His arrangement in the pore of ammonia channels is essential for substrate conductance (E_value = );-52% similar to PDB:2NPK An unusual twin-His arrangement in the pore of ammonia channels is essential for substrate conductance (E_value = );","","","Residues 6 to 263 (E-value = 1.6e-66) place PG1698 in the ABC-3 family which is described as ABC 3 transport family (PF00950)","Fri Jun 15 22:19:42 MDT 2001","34541549","","","","","","1","","","PG1946" "PG1699","2033075","2036554","3480","ATGCGTAGCCATAGATTTCTATACCTCCTCGTATTCTATCTGCTCATCCCGGTAGCTGTCGTATTCGGTATGCTGTCCTGCTCCACATCGAAGAATACGGCGGCATCCCGATTCTATCACAATTTCACTACGCGCTATAATGTATTCTACAACGGGCAGAATGCTTATAACGATGCCTATGACAGATTGCTCGAAAGCCACACGGAGGGTTATTCGGAGGAGATATTCCTCGATCCCATCACGGCTCAGTCCGGACAGGAGAAGGCCAAAGAGGGAGGGGCTTTCGATCAGGCCATTGTCAAAGGGCGAAAGGCCATCCACCTGCACAGTATTCGTACCAAACCGGAGCGTAAGCAAGGTTGGCAGAGCGATCCCAAAGCCGTAGCTTTCCAGAACAAAAGAGAATACAACCGCTTTCTGCACAATGCCTGGATGCTCGTGGGCAAATCGCAGTTCTATAATGCCGATTTCCTGCAGGCGCAGGCTACATTTTCTTATATCGCACGCTTATACAGCGACGAACCGATAATCCGCGATGAAGCCCGTCTTTGGCAGGTACGCTGCTACAGTGAGATGGGGTGGCTGCATGAAGGGGAGCGTTTGCTCGAGCGCATCCCTAAAGATCTTCCGCATGTCGATCGTAGAGGGTTGTATTCTTTGGCAGTGGCAGAGCGTTCGATCCTGTCGGGTGACAAGCGCGCGGCCATACCTTATCTCCAACAGGCAGCAAGACAAGAGAAAAACAAGCGACAACGCGCTCGTATGTATTATCTGCTCGGACAGCTTTTACAGGAAAACAATCGGCCGGAGGAGGCTCGCAAGGCCTATTCCAAAGTGTTGCGGGCTTCTCCGCCTTTCGCTTTGGACTTTGCCGCACGGATCAGGAAGATGGAGCTGGAGGGTGAACGGAATCCCCGTACAGTAGCCGCTCGATTGGAACGGATGGCCAAGAAAGGCAAGTACAAGGATGTATTGGATCAGATCTTCTATGCAGCAGGCAATATATACATGGATATTCCCGATACACTGGCGGCGATCAAAACATATACTACCGGAATAGAGAAGAGCACGGCACGTGGAGCCGATTTTGCCCTCTGCCAGATTCGTTTGGGCGACATCTATATGCAAAGGAAGCAGTACCTGAAAGCTCAGCCTTGCTTCTCTGCCGCAGCCGGTGTACTGAACAGACTCAATCCCGACTACAAGCGCGTAGCCGAACTTTCCTCCCGGCTCGATGAATTGGTCGGTCATGCCAAGGTCGTGCACGAGCAGGACAGCCTTCTTGCTCTTGCTGCCATGCCGGAAGAACAGCGACTGGCCATTATCGACAGCGTTATCAATGCCTATGCCATAGCAGAGAAGAAACGACTCGAAGAGGAGGAGATGGCAAAACTCCAGCAGAGCCAAGAGCTTTTCAATGCGGAGAGTGAAGGATTCGCTCCCTCTGCCGGCGGAAAGACTCAAAATCCACCGCCCGGAATGCAAATGGGAGGAGCTTCTGGTGAATTCTATTTCTATAATCCTCAACTGATAGCGCAGGGCAAAGCCGCTTTCGAACGCAAATGGGGAAAGCGTGTGCTGGAAGATGATTGGAGACGTAGACGCAAACAGGCCAATTTCGACATTCCTACTGACGATTCTTCTACTGCAGAAGAGACTGATGAGACGCAACCCGGAACTTTGATGACCGAAGAGGAGCTACAGGCGGCAGCTGCCGATTCCGCAACTTCCAATCCGCTCAACCGCGAATACTATCTGGCACAATTACCAATGACGGAAGATGCCAAGGAAGCTGCCGGCAAACTCATTGCAGAAGGTCTGCTCGGCATGGGAGCGGTCTTCAATGAGCGGATGGAGAAGTTCGACGAATCGGCTGACACTTACGAGACCCTGCTTCGTCGCTACCCGAACTATGAGAAGAAGATGGATGTGCTCTATCGTCTCTTTATGCTCTACACCCGAATGAACAACAAGCCGGAAGCGGAACGTTGCCGCGCCTTGATCCTACAGTACTATCCCGAAGACAATCTGGCAAAGGCCCTGAGCAATCCCGATTATCTGAAGGAATTGGCCGCAATGGATCGTCGCCAGAACGAACTCTACGGGCAAGCGTTCGACTCCTACCTCAAAGGAGTAGTCGGTTCGGTCAGAAAGAGCAGAAATGAATGCCGCGAGCGATTCCCCCTATCGGAACTGGCGCCGAAATTCGACTTCCTCAATGCACTCTGTTATGTGCTGGAGTCAGACTCCAAGGGCTTCACCTCTGCCCTGAAGCAGTTGGTGAAGGATTATCCGAAAGCAGACGTCACCGAATTGGCCTCCTCGATGCTTACCGAGTTGCTCCGCGGCCGTTCCATCGTACAGGGCGGCTATACGGGTATCGACTGGGATATTCGGTGGGGCAGTTCGGATACCGACAGCATATCGCCGGACTCTTTGCCTCCTTTTGTAAAACCCAAATCTTTCGAGCGTACCCGTCTGATCCTTCTTGCTCCTGCCGGTACATTGAATAAAAACAGGGTACTTTTTGCTCTTGCTTCATTCAACTTCTCTCGCTATACAGAGCAAACACTGGAAATAGTGCAGAGCACCGTGGGAGCATTCGATCAGTGGCTGATGACCTCTCTCCCGACCCCACGCATGGGCTGGCAGTATATCAAGGATGCTTTCGCTCCGAACGGATTTATGAGTGCGATGGGCGAAAGCAGCCTGTTGTTCCCCATATCGGAGAGCAATTACCAGCTGCTTGTCAAGGGTAAAAGCATAGGTCAATACATGACCTTCCTCGCAAAAGAAGAAGTGCCCGAGACGGCCTTCGTCCTCGATCGCTGGCAGCAGATGACCGGACGAGCGCAAGCTGTCGGCAAAGAGGATGAGGACATAGAGCCTGCTGGCACTCCGGCTCCTATCGTGTCCGACAAGAACGAGGCCGAGGATACCGCTCGCGATAGTACGTCCGGCACAGACAGGAAACCTCTTGTCTCCATCAAACCGCACAAGGACAGCATTATGACGGCTACTCCTATTACTTTCGACATCGATAGGGAGCAGATCCTCTCCGGAGCCAAGCCTGTGGCAGCCGATTCTTCCGCAGCCGATACGATCTCAGATGCAGCTGCTTTGCCATCGCTCAAGCAGCAAGAAGGCAAAGACGTCTCGGTAGAGCAGATTCAGCGGCTGGCCAAAGAGCGTGCACAAAATGAGAAGGACGAAAAGAAAGCACTCGAAAAGGCCAAGCGAGAAAAGGAGCGCGATCGCAAACGAGAATTGAAAGCACGGGAAAAAGAACGAGAAAAAGCCCGTCGCGACAAGCTTAAGGATCAACGTCTCAAGCAAAAGGAACGCGAGCAGAAGCTTAAAGAAAAAGAACGTGAGCGGAAGGAGAAACTTCGTCAACGCGAGCGAGAACGTAAGGCACGAGCGAAAGAACGCGAACAGAAGAAGAAAGCCGGACAGAACAAATCCGGCGGAGGGCCCCAA","9.70","19.50","132256","MRSHRFLYLLVFYLLIPVAVVFGMLSCSTSKNTAASRFYHNFTTRYNVFYNGQNAYNDAYDRLLESHTEGYSEEIFLDPITAQSGQEKAKEGGAFDQAIVKGRKAIHLHSIRTKPERKQGWQSDPKAVAFQNKREYNRFLHNAWMLVGKSQFYNADFLQAQATFSYIARLYSDEPIIRDEARLWQVRCYSEMGWLHEGERLLERIPKDLPHVDRRGLYSLAVAERSILSGDKRAAIPYLQQAARQEKNKRQRARMYYLLGQLLQENNRPEEARKAYSKVLRASPPFALDFAARIRKMELEGERNPRTVAARLERMAKKGKYKDVLDQIFYAAGNIYMDIPDTLAAIKTYTTGIEKSTARGADFALCQIRLGDIYMQRKQYLKAQPCFSAAAGVLNRLNPDYKRVAELSSRLDELVGHAKVVHEQDSLLALAAMPEEQRLAIIDSVINAYAIAEKKRLEEEEMAKLQQSQELFNAESEGFAPSAGGKTQNPPPGMQMGGASGEFYFYNPQLIAQGKAAFERKWGKRVLEDDWRRRRKQANFDIPTDDSSTAEETDETQPGTLMTEEELQAAAADSATSNPLNREYYLAQLPMTEDAKEAAGKLIAEGLLGMGAVFNERMEKFDESADTYETLLRRYPNYEKKMDVLYRLFMLYTRMNNKPEAERCRALILQYYPEDNLAKALSNPDYLKELAAMDRRQNELYGQAFDSYLKGVVGSVRKSRNECRERFPLSELAPKFDFLNALCYVLESDSKGFTSALKQLVKDYPKADVTELASSMLTELLRGRSIVQGGYTGIDWDIRWGSSDTDSISPDSLPPFVKPKSFERTRLILLAPAGTLNKNRVLFALASFNFSRYTEQTLEIVQSTVGAFDQWLMTSLPTPRMGWQYIKDAFAPNGFMSAMGESSLLFPISESNYQLLVKGKSIGQYMTFLAKEEVPETAFVLDRWQQMTGRAQAVGKEDEDIEPAGTPAPIVSDKNEAEDTARDSTSGTDRKPLVSIKPHKDSIMTATPITFDIDREQILSGAKPVAADSSAADTISDAAALPSLKQQEGKDVSVEQIQRLAKERAQNEKDEKKALEKAKREKERDRKRELKAREKEREKARRDKLKDQRLKQKEREQKLKEKERERKEKLRQRERERKARAKEREQKKKAGQNKSGGGPQ","2033068 2036553","TIGR ID: PG1947","hypothetical protein","Inner membrane, Periplasm, Cytoplasm","No significant hits to gapped BLAST found.","
InterPro
IPR001440
Repeat
Tetratricopeptide TPR_1
PF00515\"[364-401]TTPR_1
InterPro
IPR011990
Domain
Tetratricopeptide-like helical
G3DSA:1.25.40.10\"[143-287]TTPR-like_helical
InterPro
IPR013026
Domain
Tetratricopeptide region
SM00028\"[253-286]T\"[364-397]T\"[604-638]TTPR
PS50005\"[141-174]T\"[253-286]T\"[326-359]T\"[364-397]T\"[642-675]TTPR
PS50293\"[253-286]T\"[604-675]TTPR_REGION
InterPro
IPR013105
Repeat
Tetratricopeptide TPR_2
PF07719\"[253-286]TTPR_2
noIPR
unintegrated
unintegrated
PS51257\"[1-27]TPROKAR_LIPOPROTEIN
SSF48452\"[144-681]TSSF48452


","BeTs to 3 clades of COG0457COG name: TPR-repeat-containing proteinsFunctional Class: RThe phylogenetic pattern of COG0457 is AMTKYQVCEB-HUJ--OLINXNumber of proteins in this genome belonging to this COG is 21","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 12:26:07 MDT 2001","","Thu Jun 14 12:26:07 MDT 2001","Thu Jun 14 12:26:07 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:26:07 MDT 2001","Thu Jun 14 12:26:07 MDT 2001","","","Tue Mar 6 18:25:51 MST 2001","Mon Jun 25 15:50:45 MDT 2001","Thu Jun 14 12:26:07 MDT 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 6 18:25:51 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 253 to 286 (E-value = 6.9e-05) place PG1699 in the TPR family which is described as TPR Domain (PF00515)","Mon Jun 25 15:50:45 MDT 2001","34541550","","","","","","1","","","PG1947" "PG1700","2036582","2038000","1419","ATGAAGCATAAAGTCATTATTATCATCTATGTAGTAGTACTTCTTATGACTACAATGAGCTGCAAGTCGCAAAAATTTGCCGGCGACTGGAGTGGACGTATTCCCCGTGGGAACGGATCCTTGGCATTAGTTGTCCACCTCAAACAAACGGGAAATACCTGGCAGGGTACCATGGACAGTCCGGATCAGCAAGCATTCGGCATCCCACTCTCTTCTGTTACTGTAGTCGGCGACAGCCTCAGTATTGCTGTCCAAGACCTTCTCCTCTCATACAAAGGCAAGCTGAAGAACGACTCTATCGAAGGAGAGTTCCGGCAAGGTCGTTTCGGTACGATGATGTCCCTCTATCGTGGGCTCGATGCTGCCAAACCTTATCGACCTCAAACTCCTGTACCCCCATTCCCATACGATGTGACGGATGTCAAGATCCTGCACAAGACAGGAGGCTTCACCATAGCCGGTACACTCACCGCACCCAAAGATGCCAACAAGACCAAGGGAACCGTGATCCTGATCAGTGGGAGTGGCTTGCAGGACAGGGATGAAACCATATTCGGCCACAAACCTTTCGCTGTGCTGGCCGATCAGCTTACCCGTCATGGCTATGCTGTGCTTCGCTGCGACGATCGCGGATTCGGCGAGAGTGCCGGCGATGCCTCACAAGCCACAACGGATACGTTGGCCGGCGATATCGAGAGCGAACTCGCATATCTGCGTCAGCACTATCCCCGACTTACCGACAAAGTATTCCTCATCGGCCATAGCGAAGGCGGTATCATCGCTCCGATGGTAGCTCGCCGTGTCGGAGGTATCGCGGGACTTGTTCTGGTGGGTGCACCGTCTGTAAAAGGTGCGGAGATACTGCTCTCACAGAATGCAGCGATGGATGAATTTGCAACGGGACAGCCGCAAAGCCAAGCCAAGCGAGCTGCTTTAGAGGAATTGATCCGGCAGGCCACTGCTCCCGGTGACACTTCGGATATTCGCACTCGGATCGAATCCTATTGTCGTTCCAACGCTTCCGTGCTCTTCCCTCAGGCAATGACCGATGAGATGAAAGAACAAGGTATCAAGCTCATGACAGAGCAGCTGTACACCCCCTGGATGAGGCACTTCCTTACCTACGATCCCGCACCGCTCTTGGATGTGACATCCGGAGAGGGAAGCCATCCTCTTCCTCCCACAATGGCTATATATGGAGGTAGGGACAAGCAGGTTTTGCACGAAGTGAATATGTCCAAGATGAAGTCTCTCCTCGGTATAGAAACCGGCAATACGACTAACAAGGTCGTGTACCTTCCTGAAGTGAATCATATTATGCAGCCGGCCGAATTCGGCACGCCTGACGAGTATGCCTTTCTCAATAGGACAGTGGACACGGAACTTATGGAGATAGTTTGCTCCTTCCTGGATAGTCTT","6.40","-3.52","51562","MKHKVIIIIYVVVLLMTTMSCKSQKFAGDWSGRIPRGNGSLALVVHLKQTGNTWQGTMDSPDQQAFGIPLSSVTVVGDSLSIAVQDLLLSYKGKLKNDSIEGEFRQGRFGTMMSLYRGLDAAKPYRPQTPVPPFPYDVTDVKILHKTGGFTIAGTLTAPKDANKTKGTVILISGSGLQDRDETIFGHKPFAVLADQLTRHGYAVLRCDDRGFGESAGDASQATTDTLAGDIESELAYLRQHYPRLTDKVFLIGHSEGGIIAPMVARRVGGIAGLVLVGAPSVKGAEILLSQNAAMDEFATGQPQSQAKRAALEELIRQATAPGDTSDIRTRIESYCRSNASVLFPQAMTDEMKEQGIKLMTEQLYTPWMRHFLTYDPAPLLDVTSGEGSHPLPPTMAIYGGRDKQVLHEVNMSKMKSLLGIETGNTTNKVVYLPEVNHIMQPAEFGTPDEYAFLNRTVDTELMEIVCSFLDSL","2036581 2037999","TIGR ID: PG1948","possible lipoprotein","Periplasm, Cytoplasm","This sequence corresponds to gi:34397868 in Genbank.Its nearest neighbor in the NR database is gi:29348521 from Bacteroides thetaiotaomicron VPI-5482.","
InterPro
IPR000073
Domain
Alpha/beta hydrolase fold-1
PF00561\"[202-290]TAbhydrolase_1
InterPro
IPR008262
Active_site
Lipase, active site
PS00120\"[249-258]?LIPASE_SER
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.1820\"[150-441]TG3DSA:3.40.50.1820
PTHR11614\"[140-278]TPTHR11614
PS51257\"[1-21]TPROKAR_LIPOPROTEIN
SSF53474\"[134-471]TSSF53474


","BeTs to 3 clades of COG1073COG name: Hydrolases of the alpha/beta superfamilyFunctional Class: RThe phylogenetic pattern of COG1073 is A---Y-v-EBRh------IN-Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Mar 9 09:23:32 2005","Wed Mar 9 09:23:32 2005","Thu Feb 15 10:58:20 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1-113 show 32% similarity to PG0897,a conserved hypothetical protein.","Thu Feb 15 10:58:20 MST 2001","Wed Mar 9 09:23:32 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Apr 5 17:04:44 MDT 2001","34541551","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Wed Mar 9 09:23:32 2005","","1","","","PG1948" "PG1700.1","2038229","2037969","261","ATGATAAGTTTTCGGTGTTCCTTCTCTTTCTTATTTCCCGTCCCTTTTGCTTTTTGTGTTTATCCGCCACATTTGTCAGCCGGTAGAGATGACACGATTTCGGCAGCATGTAAACGGGCAAAAAGAGAAAAGTCGTATCCTCCCTTCGCATTCGGACATAAAGAAAAAGCCGAAACCCTCTTGCATCGAAGAAGGTTTCGGCTTTTCGGCCGGAGGCAAACGACTATCAAAGACTATCCAGGAAGGAGCAAACTATCTCCA","","","10111","MISFRCSFSFLFPVPFAFCVYPPHLSAGRDDTISAACKRAKREKSYPPFAFGHKEKAETLLHRRRFRLFGRRQTTIKDYPGRSKLSP","","NO TIGR ID corresponds to this gene.","hypothetical protein","Periplasm","No significant hit found in gapped BLAST with E value less than e-04.","
noIPR
unintegrated
unintegrated
signalp\"[1-19]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Thu Feb 15 10:59:28 MST 2001","","Thu Feb 15 10:59:28 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG1701","2039281","2038280","1002","ATGAGCTACTTAACAGAAGAGAAATTGACCATTGTCGGTGCAGCCGGTATGATTGGTTCCAACATGGCACAGACAGCTGCAATGATGCGTCTGACCCCTAATTTGTGTTTGTATGATCCTTTCGCAGTAGGTTTGGAAGGCGTGGCAGAGGAAATCCGTCACTGCGGATTCGAAGGCCTGAATCTGACTTTTACATCCGACATCAAAGAGGCTCTTACAGATGCCAAATATATAGTTTCTTCGGGCGGTGCTCCGCGCAAAGAGGGTATGACCCGCGAGGATCTGCTCAAGGGCAATGCCGAAATCGCTGCTCAGCTGGGCAAGGACATCAAGAGCTATTGTCCCGACTGTAAGCACGTGATCATCATCTTCAATCCGGCTGACATCACCGGTCTTGTTACGCTTATCTACTCCGGGCTGAAGCCTTCGCAGGTGACTACTTTGGCCGGTTTGGACAGCACACGTCTGCAAAGCGAACTGGCTAAGCACTTCGGCATCAAACAAAGTCTCGTGACCAACACGCGTACTTATGGAGGTCATGGCGAGCAGATGGCTGTTTTCGCCAGCACGGCCAAGGTAAACGGAACGCCTCTGACCGATCTGATCGGTACCGACAAGCTGACCAACGAGCAGTGGGCAGAACTGAAACAGCGTGTCGTGAAGGGGGGAGCCAACATTATCAAGCTACGTGGTCGCTCGTCTTTCCAAAGCCCTTCTTACGTGTCTATCGAAATGATTCGTGCCGCCATGGGGGGCGAAGCTTTCCGTTGGCCGGCCGGCTGCTACGTGAATGTGCCGGGCTTCGAGCACATCATGATGGCTATGGAGACTACTATCACGAAAGATGGCGTGAAGTACAGCGATATTAACCAACTCGGCAACGAAGCAGAGCGCGCTGCCCTCAAAGAGAGCTATAGCCACCTGGCTAAGCTGCGCGACGAAGTGATCGCCATGGGCATCATTCCCGCGATCGCTGACTGGAAGACGGTGAATCCGAACCTC","6.80","-0.78","36174","MSYLTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFNPADITGLVTLIYSGLKPSQVTTLAGLDSTRLQSELAKHFGIKQSLVTNTRTYGGHGEQMAVFASTAKVNGTPLTDLIGTDKLTNEQWAELKQRVVKGGANIIKLRGRSSFQSPSYVSIEMIRAAMGGEAFRWPAGCYVNVPGFEHIMMAMETTITKDGVKYSDINQLGNEAERAALKESYSHLAKLRDEVIAMGIIPAIADWKTVNPNL","2039631 2038279 [Bad Olap 2203 181 24]","Malate dehydrogenase (MDH) [1,2] catalyzes the interconversion of malate to oxaloacetate utilizing the NAD/NADH cofactor system. The enzyme participates in the citric acid cycle and exists in all aerobics organisms. TIGR ID: PG1949","malate dehydrogenase","Cytoplasm, Periplasm","Numerous hits with gapped BLAST to malate dehydrogenases; e.g. residues 4-324 are 32% similar to malate dehydrogenase of Rhizobium leguminosarum gi|3183070|,residues 4-316 are 24% similar to malate dehydrogenae (AE000750) of Aquifex aeolicus.This sequence is similar to BT2510.","
InterPro
IPR001236
Family
Lactate/malate dehydrogenase
G3DSA:3.90.110.10\"[149-318]Tlact_mal_DH
PF00056\"[7-148]TLdh_1_N
PF02866\"[151-319]TLdh_1_C
InterPro
IPR001557
Family
L-lactate/malate dehydrogenase
PIRSF000102\"[8-319]TLac_mal_DH
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.720\"[7-149]TG3DSA:3.40.50.720
PTHR11540\"[4-322]TPTHR11540
PTHR11540:SF4\"[4-322]TPTHR11540:SF4
SSF51735\"[8-147]TSSF51735
SSF56327\"[148-315]TSSF56327


","BeTs to 14 clades of COG0039COG name: Malate/lactate dehydrogenasesFunctional Class: CThe phylogenetic pattern of COG0039 is amt-YQvceBrh--gpo-inxNumber of proteins in this genome belonging to this COG is 1","***** IPB001557 (L-lactate dehydrogenase) with a combined E-value of 4.1e-21. IPB001557A 9-46 IPB001557B 68-117 IPB001557C 121-160 IPB001557D 163-198 IPB001557E 216-257***** IPB001252 (Malate dehydrogenase active site) with a combined E-value of 6.5e-15. IPB001252A 8-22 IPB001252B 76-103 IPB001252E 215-237","Residues 125-311 are 31% similar to a (DEHYDROGENASE OXIDOREDUCTASE NAD L-LACTATE GLYCOLYSIS) protein domain (PD000436) which is seen in MDH_RHILV.Residues 31-116 are 36% similar to a (DEHYDROGENASE OXIDOREDUCTASE NAD MALATE L-LACTATE) protein domain (PD000350) which is seen in O81844_ARATH.","","Thu Jun 14 12:26:18 MDT 2001","","Thu Jun 14 12:26:18 MDT 2001","Thu Jun 14 12:26:18 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:26:18 MDT 2001","Thu Jun 14 12:26:18 MDT 2001","","Mon Jun 25 15:41:34 MDT 2001","Wed Mar 22 10:52:11 MST 2000","Wed Dec 17 11:05:04 2003","Wed Feb 21 15:26:31 MST 2001","Mon Jun 25 15:41:34 MDT 2001","Mon Jun 25 15:41:34 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No evidence of paralogs in P. gingivalis.","Fri Apr 7 15:35:51 MDT 2000","Tue May 22 16:53:09 MDT 2001","-49% similar to PDB:2HJR Crystal Structure of Cryptosporidium parvum malate dehydrogenase (E_value = 7.9E_24);-45% similar to PDB:1IZ9 Crystal Structure of Malate Dehydrogenase from Thermus thermophilus HB8 (E_value = 3.9E_23);-45% similar to PDB:1Y7T Crystal structure of NAD(H)-depenent malate dehydrogenase complexed with NADPH (E_value = 3.9E_23);-45% similar to PDB:2CVQ Crystal structure of NAD(H)-dependent malate dehydrogenase complexed with NADPH (E_value = 3.9E_23);-51% similar to PDB:1GV0 STRUCTURAL BASIS FOR THERMOPHILIC PROTEIN STABILITY: STRUCTURES OF THERMOPHILIC AND MESOPHILIC MALATE DEHYDROGENASES (E_value = 8.8E_23);","","","Residues 7 to 148 (E-value = 3.8e-29) place PG1701 in the Ldh_1_N family which is described as lactate/malate dehydrogenase, NAD binding domain (PF00056)Residues 149 to 319 (E-value = 2.2e-08) place PG1701 in the Ldh_1_C family which is described as lactate/malate dehydrogenase, alpha/beta C-terminal domain (PF02866)","Wed Dec 17 11:05:04 2003","34541552","","","Musrati RA, Kollarova M, Mernik N, Mikulasova D. Malate dehydrogenase: distribution, function and properties. Gen Physiol Biophys 1998 Sep;17(3):193-210. PubMed: 9834842. ","","Fri Apr 7 15:35:51 MDT 2000","1","","","PG1949" "PG1702","2039452","2039727","276","GTGGTTCGAGAAAATTTTCGTTTTGGTTCGGGAAGCAAAAAATTCTCGCGCCACAACGAAAAAATTCTCGCGCCTGTTTTTCAGGATTCTCAGACCGCAATCCGAGCATTTCCCGTTCGTATTTTCGAGAAAGCAGATCAGCTGACACTCGCCTACCGGCCCGAACATGCAGGGAGGACAAGCCTCGGTAAAAAACGATCTACATGGATGATTGTGAAAATTGCAAAAGAAAACAGGAAAAACGACTATCTTCGGTATCCGAACTCACTCACATTC","11.40","11.46","10743","VVRENFRFGSGSKKFSRHNEKILAPVFQDSQTAIRAFPVRIFEKADQLTLAYRPEHAGRTSLGKKRSTWMIVKIAKENRKNDYLRYPNSLTF","2039451 2039726 [Shorter 2202 181 70]","NO TIGR ID corresponds to this gene.","hypothetical protein","Periplasm, Cytoplasm","Residues 4-42 have 65% similarity to A49228, P. gingivalis trypsin-like proteinase prtT.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Feb 15 11:06:11 MST 2001","Tue Jun 5 11:56:31 MDT 2001","Thu Feb 15 11:05:30 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","PG1702 is weakly similar to several proteins. Residues 1-39 have 74% similarity with PG1728.1, a hypothetical protein.Residues 2-42 have 70% similarity with PG1355, a trypsin-like proteinase prtT. Also similar to PG1926, PG1849.2, and PG1786.2, all hypothetical proteins.","Tue Jun 5 11:56:31 MDT 2001","Fri Jun 1 09:46:23 MDT 2001","-56% similar to PDB:1YBE Crystal Structure of a Nicotinate phosphoribosyltransferase (E_value = );-58% similar to PDB:1U5U The structure of an Allene Oxide Synthase reveals a novel use for a catalase fold (E_value = );","","","No significant hits to the Pfam 11.0 database","Fri Jun 1 09:46:23 MDT 2001","","","","","","","1","","","" "PG1703","2039743","2040900","1158","ATGCAAAGTTTTTTTGACAGGGAATTTACGTTCGACCGTACTGCACGCCTGTTTTTCATCATCCTGTTGGTTGGAGGCATTATGGCCATAGTCATTGGCTTGAGAGGCATCCTTATACCTTTTTGTCTCTCTTGGATTCTTGCCTATGTGCTGATGCCTCTGGTTCGTTTTGTCCAGTATCGGCTCCATTTTCGCTTTCGCTTTCTGTCGGTGATCACGGTGCTGGTTTTCATATCGGCATTGATCTTTTTTGCCATTCTCTCTTTGGTTCCTGCTGTAGAAGAAGAGGTAAGCAAAACAATAACCCTGCTCCAGCAGTACCGCATCGATGAGAATTTGCTACAGATGCTGCCGGCTCCGATCCGCAAGTTTCTGTCAGAGAGTGGCAGCATGAACGATCTGTTCAAAGGTATCTCTTACGAGAAATTGATGGAGAATAGCAAGGAGATATTCGGACAGCTCAATAAGCTCGTCTCCGGTACGATCAGCTTGTTCAGCTATACGACGATCTTCTTCATAGGTGTTTTATACTTCATTTTCATCCTGTTCGATTTCGAAAAACTGGGCAAAGGATTTGTCAATCTTTTCCCGGTCGGACACCGTATTCGCGTTAGGAGCATACTCAAAGAAGTGGACAAGAATATGAACAGCTACTTCCGCGGACAGGCCCTGATCGCCCTTTGTGTGGGCATCCTTCTTTCCATCGGTTACAAGATTATCGACTTTCCTCTGGGAGTTACGCTCGGTCTCTTTATCGGTATGCTGAATCTGATTCCATACTTACAGATAGTCGGTTTGATCCCGATTGTTTTCTTGTCAGTGCTTAAGGCGGCACAGACGGGACAGAATTTCTTCGTTGTTCTTGCCCTCGGTATAGGTGTGATGATGATTGTCCAAGTAATTCAAGACACGATTCTGACCCCCAACATCATGGGCAAAAGGATGGGCATGTCTCCTGCAATGATTTTGCTTTCGATTTCCATCTGGGGGAGCCTGCTCGGCTTTTTCGGACTGTTCATTGCCCTGCCGCTCACCATGTCGCTTTATTCCGTGTACAAACGCTATGTGATTCAGGATCCCAAGTTCATCCGAGAGGAGAATGAAGAGACTATGCCCAAGAAGGGGCTGTTTAGAAAGCATAGCCGAAAGGAGGAAAAA","10.50","13.63","44031","MQSFFDREFTFDRTARLFFIILLVGGIMAIVIGLRGILIPFCLSWILAYVLMPLVRFVQYRLHFRFRFLSVITVLVFISALIFFAILSLVPAVEEEVSKTITLLQQYRIDENLLQMLPAPIRKFLSESGSMNDLFKGISYEKLMENSKEIFGQLNKLVSGTISLFSYTTIFFIGVLYFIFILFDFEKLGKGFVNLFPVGHRIRVRSILKEVDKNMNSYFRGQALIALCVGILLSIGYKIIDFPLGVTLGLFIGMLNLIPYLQIVGLIPIVFLSVLKAAQTGQNFFVVLALGIGVMMIVQVIQDTILTPNIMGKRMGMSPAMILLSISIWGSLLGFFGLFIALPLTMSLYSVYKRYVIQDPKFIREENEETMPKKGLFRKHSRKEEK","2039742 2040899","TIGR ID: PG1950","possible permease","Inner membrane, Cytoplasm","Residues 17-326 show 25% similarity to AJ235272, R. prowazekii probable permease perM homolog (perM).Residues 3-353 show 24% similarity to U78604, S. mutans putative membrane protein.Residues 14-348 show 22% similarity to G70007, B. subtilis conserved hypothetical protein yrrI. ","
InterPro
IPR002549
Family
Protein of unknown function UPF0118
PTHR21716\"[101-371]TUPF0118
PF01594\"[15-356]TUPF0118


","BeTs to 13 clades of COG0628COG name: Predicted permeaseFunctional Class: RThe phylogenetic pattern of COG0628 is amtK-qVCEBRHuj--ol--xNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 40-240 are 26% similar to a (PROTEIN MITOCHONDRION TRANSMEMBRANE OXIDOREDUCTASE NAD) protein domain (PD000148) which is seen in Q9ZCT3_RICPR.Residues 39-239 are 25% similar to a (PROTEIN TRANSMEMBRANE PUTATIVE PERMEASE) protein domain (PD132771) which is seen in O32086_BACSU.Residues 14-237 are 23% similar to a (YRRI PROTEIN) protein domain (PD132787) which is seen in O34472_BACSU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Apr 5 17:16:08 MDT 2001","Thu Feb 15 11:15:21 MST 2001","Thu Feb 15 11:15:21 MST 2001","","Thu Feb 15 11:15:21 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Apr 5 17:16:08 MDT 2001","-64% similar to PDB:1JAJ Solution Structure of DNA Polymerase X from the African Swine Fever Virus (E_value = );-64% similar to PDB:1JQR NMR structure of the African swine fever virus DNA polymerase X (E_value = );-49% similar to PDB:2C5M CRYSTAL STRUCTURE OF THE SYNTHETASE DOMAIN OF HUMAN CTP SYNTHETASE (E_value = );","","","Residues 15 to 356 (E-value = 6.9e-38) place PG1703 in the UPF0118 family which is described as Domain of unknown function DUF20 (PF01594)","Fri Apr 6 16:50:46 MDT 2001","34541553","","","","","","1","","","PG1950" "PG1704","2041285","2042982","1698","ATGAACGAAAATAAGAACAGCGGCATAGAGGAAAAGAAGAGTCTTAACTTCATCGAACAAATTGTGGAATCAGACCTGTCCGAAGGGAAGAATGACGGTCGAATCCAGACACGTTTCCCTCCGGAACCCAACGGCTATCTCCATATCGGCCATGCCAAAGCTATCTGCATAGACTTCGGGATAGCTCAGCGATACGGGGGCGTCTGCAACCTGCGCTTCGACGATACCAATCCGGTGAAAGAGGACGTGGAGTACGTGGATGCCATCAGAGAAGATATAGAATGGCTTGGCTTCCACTGGGGCAATATCTACTATGCTTCCGACTATTTTCAGGAATTGTACGACTTCGCCGAGCGACTGATCCGCGAGGGACATGCCTATGTGGACGAACAGACTGCCGAGCAGATCGCCGCACAGAAAGGTAGCCCGACTGTGCCCGGCACGGCCAGTCCGTTCCGCGACCGTCCGGCAGAAGAGAGCCTCGACCTCTTCCGTCGAATGAATGTCGGAGAGTTCGAAGAAGGCGCCATGACCCTACGTGCCAAGATCGATATGGCTTCGTCCAATATGCACTTCCGAGATCCGATTATCTATCGCATCATCAAGCATCCGCATCATCGTACAGGCAACGAATGGAATGTCTACCCGATGTACGACTTTGCTCACGGCCAGAGCGATTATTTCGAAGGAGTCACGCATTCGATCTGCACCCTCGAATTCGAGGTGCATCGTCCCCTTTACAATTACTTTATCGAGCTGCTCAGAAAAGACAGCTATGCACCTCGTCAGATAGAGTTCAACCGCCTGAATCTGACCTATACGATGATGAGCAAGCGCAAGCTGCTCCAGCTCGTCAAAGACGGGCTGGTATCGGGCTGGGACGATCCCCGTATGCCTACTTTGTGCGGCTATCGCCGTCGTGGCTATACACCGGAGTCGATCCGCAACTTCATAGACAAAATAGGCTATACCAAGTACGATGGCATTATAGACGTAGCCCTTCTGGAGCATGCTGTTCGGGAGGACTTGAATAAACGTGCCACAAGGGTTTCCGGTGTAATCGATCCGATCAAACTGGTGATCACGAACTATCCCGAGGACAAGACGGAAGAGATGGCAGCCGTGAACAATCCGGAAGATGAGTCTGCCGGCGTACATACGATTACTTTCGCTCGCGAACTGTACATAGAGAAGGAGGATTTCATGGAGGATGCTCCCAAGAAATATTTCCGAATGACGCCCGGGCAGGAAGTACGCTTGAAGAGTTCTTACATAGTCCGTTGTACGGGATGCAAAAAGGACGAGGACGGAAACGTCGTGGAAGTATATGCCGAATACGATCCGCTGACGCTGTCCGGTATGCCTGAGAGCAACCGCAAAGTAAAGGGTACCATCCATTGGGTATCGGCACAGCACAGTCTGCCGGCAGAGGTACGACTGTACGATCGTCTCTTCACTGACGAAAACCCGTCGGACATCAAAGACAAGACACTGGCCGAGATGCTGAACCCGGATTCTCTCAAGGTGCTAAAAAACTGCCGAGTAGAGCCTTTCCTCGCGGATGCCGCTCCGGGATCGCACTTCCAGTTCCAGCGCATAGGTTACTTCACGGTGGATCCGGATAGTCGTCCGGGGGCATTGGTTTTCAACCGCACGGTTTCGCTGAAAGATTCTTGGCAGAAAGCCCAAAAGAACGCA","5.50","-14.41","65200","MNENKNSGIEEKKSLNFIEQIVESDLSEGKNDGRIQTRFPPEPNGYLHIGHAKAICIDFGIAQRYGGVCNLRFDDTNPVKEDVEYVDAIREDIEWLGFHWGNIYYASDYFQELYDFAERLIREGHAYVDEQTAEQIAAQKGSPTVPGTASPFRDRPAEESLDLFRRMNVGEFEEGAMTLRAKIDMASSNMHFRDPIIYRIIKHPHHRTGNEWNVYPMYDFAHGQSDYFEGVTHSICTLEFEVHRPLYNYFIELLRKDSYAPRQIEFNRLNLTYTMMSKRKLLQLVKDGLVSGWDDPRMPTLCGYRRRGYTPESIRNFIDKIGYTKYDGIIDVALLEHAVREDLNKRATRVSGVIDPIKLVITNYPEDKTEEMAAVNNPEDESAGVHTITFARELYIEKEDFMEDAPKKYFRMTPGQEVRLKSSYIVRCTGCKKDEDGNVVEVYAEYDPLTLSGMPESNRKVKGTIHWVSAQHSLPAEVRLYDRLFTDENPSDIKDKTLAEMLNPDSLKVLKNCRVEPFLADAAPGSHFQFQRIGYFTVDPDSRPGALVFNRTVSLKDSWQKAQKNA","2041284 2042981","TIGR ID: PG1951","glutaminyl-tRNA synthetase","Cytoplasm","Residues 16-559 show 56% similarity to AE004605, P. aeruginosa glutaminyl-tRNA synthetase.Residues 11-561 show 54% similarity to AE005246, E. coli glutaminyl-tRNA synthetase.Residues 11-559 show 54% similarity to AE006088, P. multocida glutaminyl-tRNA synthetase.This sequence is similar to BT1325.","
InterPro
IPR000924
Family
Glutamyl-tRNA synthetase, class Ic
PR00987\"[38-50]T\"[67-80]T\"[216-226]TTRNASYNTHGLU
PTHR10119\"[38-565]TGlu_tRNA-synt_1c
PF00749\"[34-345]TtRNA-synt_1c
PF03950\"[347-539]TtRNA-synt_1c_C
InterPro
IPR001412
Family
Aminoacyl-tRNA synthetase, class I
PS00178\"[41-52]TAA_TRNA_LIGASE_I
InterPro
IPR004514
Family
Glutaminyl-tRNA synthetase
PTHR10119:SF3\"[38-565]TGlnS
TIGR00440\"[35-561]TglnS
InterPro
IPR011035
Domain
Ribosomal protein L25-like
SSF50715\"[347-558]TRibosomal_L25rel
noIPR
unintegrated
unintegrated
G3DSA:1.10.1160.10\"[268-346]TG3DSA:1.10.1160.10
G3DSA:2.40.240.10\"[355-473]TG3DSA:2.40.240.10
G3DSA:3.90.800.10\"[107-215]TG3DSA:3.90.800.10
SSF52374\"[15-344]TSSF52374


","BeTs to 17 clades of COG0008COG name: Glutamyl- and glutaminyl-tRNA synthetasesFunctional Class: JThe phylogenetic pattern of COG0008 is amtkYqVcEbrHUJgpolinXNumber of proteins in this genome belonging to this COG is 2","***** PR00987 (Glutamyl-tRNA synthetase signature) with a combined E-value of 1.1e-11. PR00987A 38-50 PR00987C 67-80 PR00987D 216-226","Residues 407-557 are 41% similar to a (PROTEIN GLUTAMINYL-TRNA SYNTHETASE) protein domain (PD017811) which is seen in O62431_CAEEL.Residues 35-317 are 62% similar to a (SYNTHETASE GLUTAMYL-TRNA PROTEIN AMINOACYL-TRNA LIGASE) protein domain (PD001595) which is seen in SYQ_ECOLI.Residues 340-539 are 46% similar to a (SYNTHETASE PROTEIN AMINOACYL-TRNA LIGASE BIOSYNTHESIS) protein domain (PD004693) which is seen in SYQ_ECOLI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu May 17 12:12:08 MDT 2001","Thu Dec 4 13:25:58 2003","Thu Feb 15 11:28:17 MST 2001","Thu May 17 11:56:09 MDT 2001","Thu Feb 15 11:28:17 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 34-323 show 25% similarity to PG1371, glutamyl-tRNA synthetase.","Thu Feb 15 11:28:17 MST 2001","Wed Jul 30 13:05:08 2008","-70% similar to PDB:1GSG STRUCTURE OF E.COLI GLUTAMINYL-TRNA SYNTHETASE COMPLEXED WITH TRNAGLN AND ATP AT 2.8 ANGSTROMS RESOLUTION (E_value = 2.0E_169);-70% similar to PDB:1GTR STRUCTURAL BASIS OF ANTICODON LOOP RECOGNITION BY GLUTAMINYL-TRNA SYNTHETASE (E_value = 2.0E_169);-70% similar to PDB:1GTS STRUCTURAL BASIS FOR TRANSFER RNA AMINOACEYLATION BY ESCHERICHIA COLI GLUTAMINYL-TRNA SYNTHETASE (E_value = 2.0E_169);-70% similar to PDB:1O0B CRYSTAL STRUCTURE OF L-GLUTAMINE AND AMPCPP BOUND TO GLUTAMINE AMINOACYL TRNA SYNTHETASE (E_value = 2.0E_169);-70% similar to PDB:1O0C CRYSTAL STRUCTURE OF L-GLUTAMATE AND AMPCPP BOUND TO GLUTAMINE AMINOACYL TRNA SYNTHETASE (E_value = 2.0E_169);","","","Residues 34 to 345 (E-value = 2.5e-127) place PG1704 in the tRNA-synt_1c family which is described as tRNA synthetases class I (E and Q), catalytic domain (PF00749)Residues 347 to 539 (E-value = 2.8e-73) place PG1704 in the tRNA-synt_1c_C family which is described as tRNA synthetases class I (E and Q), anti-codon binding domain (PF03950)","Thu Dec 4 13:25:58 2003","34541554","","","","","","1","","","PG1951" "PG1705","2043013","2043657","645","ATGGGATTTATTCAGTGGTGCCTCGCGCACCTGAACTATTGGACTATCATGTTTTTGATGGCCATCGAGAGTTCGTTTATTCCGTTCCCGTCAGAGATTATTGTGCCCCCGGCTGCATGGATGGCTGCCACGGGGCAAAATGGACTGAACGTTTTCCTCGTTATCCTGTTCGCCACCATCGGTGCCGGAATAGGAGCTGCCGTAAACTATATACTGTCTCTATTGCTCGGTCGCCCTATCGTCTACGCGTTTGCCAACAGTAAGCTCGGGCATTTGTGTCTGATCAACGAGGAGAAAGTACGATATGCAGAGCGATATTTCGACAAGAACGGAGCTGTCTCCACACTGGTAGGACGTTTGATTCCTGCCGTCAGACAGTTAATTTCCATACCGGCAGGACTGGCACGCATGAAGTTTCTGCCCTTTATCTCTTACACCATGCTCGGAGCCGGCATTTGGAACTGCATATTGGCGGCAATAGGCTATAATCTGGCCAAAGTGCCCGGCATAGAAACGCAGGAGCAACTTTTGGAGAAAGTCAATAAGTACAGCCACGAAATCGGGTTCTCCATAATGGGAGTCGTCGTAGTAGTACTCCTGATAATGTTTTACAAGAAAAAGCGACGTTCGGCACGGAAAGGGAAC","10.50","10.57","23789","MGFIQWCLAHLNYWTIMFLMAIESSFIPFPSEIIVPPAAWMAATGQNGLNVFLVILFATIGAGIGAAVNYILSLLLGRPIVYAFANSKLGHLCLINEEKVRYAERYFDKNGAVSTLVGRLIPAVRQLISIPAGLARMKFLPFISYTMLGAGIWNCILAAIGYNLAKVPGIETQEQLLEKVNKYSHEIGFSIMGVVVVVLLIMFYKKKRRSARKGN","2043012 2043656","TIGR ID: PG1952","dedA homolog","Inner membrane, Cytoplasm","Residues 1-166 show 40% similarity to AL139077, C. jejuni putative integral membrane protein (dedA homolog).Residues 20-200 show 37% similarity to AL356892, S. coelicolor putative DedA-family protein.Residues 3-154 show 37% similarity to AL356892, S. coelicolor putative DedA-family protein.","
InterPro
IPR015414
Domain
SNARE associated Golgi protein
PF09335\"[35-163]TSNARE_assoc


","BeTs to 5 clades of COG0586COG name: Uncharacterized membrane-associated protein, DedA familyFunctional Class: SThe phylogenetic pattern of COG0586 is -------CEBRhUJ--ol---Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 13-127 are 32% similar to a (PROTEIN INTERGENIC REGION DEDA) protein domain (PD002864) which is seen in APL_LACLA.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Feb 15 11:52:25 MST 2001","Thu Feb 15 11:52:25 MST 2001","Thu Feb 15 11:52:25 MST 2001","","Thu Feb 15 11:52:25 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu May 17 12:21:25 MDT 2001","-54% similar to PDB:1I3Q RNA POLYMERASE II CRYSTAL FORM I AT 3.1 A RESOLUTION (E_value = );-54% similar to PDB:1I50 RNA POLYMERASE II CRYSTAL FORM II AT 2.8 A RESOLUTION (E_value = );-54% similar to PDB:1I6H RNA POLYMERASE II ELONGATION COMPLEX (E_value = );-54% similar to PDB:1K83 Crystal Structure of Yeast RNA Polymerase II Complexed with the Inhibitor Alpha Amanitin (E_value = );-48% similar to PDB:1L3S Crystal Structure of Bacillus DNA Polymerase I Fragment complexed to 9 base pairs of duplex DNA. (E_value = );","","","Residues 15 to 178 (E-value = 2.3e-06) place PG1705 in the DedA family which is described as DedA family (PF00597)","Thu May 17 12:21:25 MDT 2001","34541555","","","","","","1","","","PG1952" "PG1706","2043717","2044649","933","ATGGCTCTTACAAAAACTTCAAAACTCTATTACAAAGTCCACGACTACATCCTTATTATTCTGGGATGCTCCATCTATGCTTTTGCGTGGACGGGCTTCATCCTTTCCCAAGGAATTACCACGGGAGGATTGGCCGGTATCTCCACTCTGATCAAGATCGCCACGGGTATTCCGGCTGCGATACCGTACAATATCATCAATCTGGGATTAGCGGTACTCGCTCTGATCTTCTTGGGATGGCGTTTCATGGTCAAGACGGTCATAAGCGTTGTCATAATGGCCATTATCATCCCGATAGGTGAAGAGTATCTGGTCGTCACGGAGATCGTCAATGGCGTAAAAGTTTTTACGCCTCTTCTACTGCCGAATGAACCGGCCTTAGCTCTGGTGATCGGCTCCATTCTTAGCGGTCTGGGTATTGCGATAGTATTCTCCGTGAACTCCAGTACGGGCGGTACCGATATTATCGTAGCCATCATGAACAAGTACAAGAACATGTCGTTCGGACGCGCCATTCTACTGGTGGACTGTACCATTATTTTGTGCTCGTATCTGGTCAATGTCTACATCGCCGGCAAGTCACCTTCCGACGCTTTCAACCTGCTTATCTATTCGGCCATAGAGGTTATCCTCGTATCTACAGTCTTGGATTGGTATCTCAATTCGAATAGACAGTCCGTGCAATTCCTCATCTTCAGTCTCAAAAACGAAGAGCTCAGTAATGCCATTCAAGAGCGCATCAAAAGGGGGTGTACCCTGCTGGATGCGACAGGAGGCTATTCCGGCCAACCTTGTAAAGTTCTTGTGGTCGTTGCACGCAAGACACAAAGCCTATCCATCCACAGAATCATTCAGGAGATCGACCCCAAAGCCTTTGTATCCGAATCCGTAGTGAGAGGGGTATATGGGGAAGGATTCCAAGCAATAAGAAAA","9.20","6.24","33703","MALTKTSKLYYKVHDYILIILGCSIYAFAWTGFILSQGITTGGLAGISTLIKIATGIPAAIPYNIINLGLAVLALIFLGWRFMVKTVISVVIMAIIIPIGEEYLVVTEIVNGVKVFTPLLLPNEPALALVIGSILSGLGIAIVFSVNSSTGGTDIIVAIMNKYKNMSFGRAILLVDCTIILCSYLVNVYIAGKSPSDAFNLLIYSAIEVILVSTVLDWYLNSNRQSVQFLIFSLKNEELSNAIQERIKRGCTLLDATGGYSGQPCKVLVVVARKTQSLSIHRIIQEIDPKAFVSESVVRGVYGEGFQAIRK","2043716 2044648","TIGR ID: PG1953","conserved hypothetical protein (possible YitT family)","Inner membrane, Cytoplasm","Residues 12-311 are 28% similar using gapped BLAST to gb|AAD35270.1|AE001702, a conserved hypothetical protein in Thermotoga maritima.This sequence is orthologous to CT221.","
InterPro
IPR003740
Family
Protein of unknown function DUF161
PF02588\"[15-97]T\"[125-216]TDUF161


","BeTs to 5 clades of COG1284COG name: Uncharacterized BCR, YitT familyFunctional Class: SThe phylogenetic pattern of COG1284 is ------v--B----GPo-in-Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 144-303 are 23% similar to a (PROTEIN TRANSMEMBRANE MG432 HOMOLOG) protein domain (PD018181) which is seen in Y443_MYCGE.Residues 231-306 are 39% similar to a (PROTEIN TRANSMEMBRANE INTERGENIC REGION) protein domain (PD007590) which is seen in YPJC_BACSU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Apr 18 17:49:20 MDT 2001","Wed Apr 18 17:49:20 MDT 2001","Wed Apr 18 17:49:20 MDT 2001","","Wed Apr 18 17:49:20 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Apr 18 17:49:20 MDT 2001","-53% similar to PDB:1JQK Crystal structure of carbon monoxide dehydrogenase from Rhodospirillum rubrum (E_value = );-62% similar to PDB:1CL7 ANTI HIV1 PROTEASE FAB (E_value = );-62% similar to PDB:1CLY IGG FAB (HUMAN IGG1, KAPPA) CHIMERIC FRAGMENT (CBR96) COMPLEXED WITH LEWIS Y NONOATE METHYL ESTER (E_value = );-62% similar to PDB:1CLZ IGG FAB (IGG3, KAPPA) FRAGMENT (MBR96) COMPLEXED WITH LEWIS Y NONOATE METHYL ESTER (E_value = );-62% similar to PDB:1JP5 Crystal structure of the single-chain Fv fragment 1696 in complex with the epitope peptide corresponding to N-terminus of HIV-1 protease (E_value = );","","","Residues 15 to 97 (E-value = 6.6e-12) place PG1706 in the DUF161 family which is described as Uncharacterized BCR, YitT family COG1284 (PF02588)Residues 125 to 216 (E-value = 3.3e-12) place PG1706 in the DUF161 family which is described as Uncharacterized BCR, YitT family COG1284 (PF02588)","Wed Apr 18 17:49:20 MDT 2001","34541556","","","","","","1","","","PG1953" "PG1707","2044656","2045672","1017","GTGGGGAACAAGCGAGTTCTCATCACGGGAGCAACGGGCTTCATCGGCGGCTATCTGGTCGATGAAGCCCTGCGCCGTCAATATGAAGTGTGGGCGGCTGTGCGTCCCCACAGCGATCGCTCACGCCTGACAGACAGCCGGATCCGATTTGTAGAGATCGACTACCGCGACCCGTCCGATATTGCTCGCTTGGCTGATAAGATAGCTCCCGAAGGTGAATCCGCATGGCACTTGGTTATCCACAACGCCGGTATAACCAAAGCTCGTGACACCTCGCTTTTCAGAGAGATCAATGCAGAGCAGACCAAGCGTTTTCTGATAGGATTACAAGGGGCGAAGCACTGCCCCGAACGCTTTGTCCTGATGAGCAGTATGGGTAGCTATGGAGCTCCTCCCGACGACTGCCAACCACTTTCCTCCTCTTCCGTACCCAAACCTACGACTGCCTATGGAGAGAGCAAGTTGCTGGCGGAGCAATATGTGCAAACCTTTGTCACAATACCCTATACCATAATACAACCCACAGGAGTCTATGGACCTCATGACCAAGACTATCTGATGGCAATCCGCAGCGTCGACAAGGGATTCGATTTCTCCACGGGTAATACGCCGCAAACACTGACTTTTATTTACGCAGAGGATCTGGCCTCAGCAGTTTTCATCGCAGCCGAACACCCCGATGCAGCAGGGCAGAAGTATATAGTATCGGATGGAAAAGAATACACCGATATAGAGTTCGGACGAATGATCCAACACCTGCTCGACAGAAAAAACGTATGCCATTTGCGTATTCCTCTGCCTTTAGTAAAAGCCACCTGCTATATCGGCCAAAAATGGGCAGACATCAGTGGCACATTGACACCGCTTAACCTCGATAAATACGCCATCATAGCCCAACGCAACTGGCGGTGCGACTCTTCTCCGATCAGGGCAATCGGTTTTTCTCCTCGCTATAATCTGGAGCAAGGTTTGGCCGAGACCATTCGTTGGGCACGTACCACCGGACAAATCCGTCGT","8.10","3.70","37959","VGNKRVLITGATGFIGGYLVDEALRRQYEVWAAVRPHSDRSRLTDSRIRFVEIDYRDPSDIARLADKIAPEGESAWHLVIHNAGITKARDTSLFREINAEQTKRFLIGLQGAKHCPERFVLMSSMGSYGAPPDDCQPLSSSSVPKPTTAYGESKLLAEQYVQTFVTIPYTIIQPTGVYGPHDQDYLMAIRSVDKGFDFSTGNTPQTLTFIYAEDLASAVFIAAEHPDAAGQKYIVSDGKEYTDIEFGRMIQHLLDRKNVCHLRIPLPLVKATCYIGQKWADISGTLTPLNLDKYAIIAQRNWRCDSSPIRAIGFSPRYNLEQGLAETIRWARTTGQIRR","2044655 2045671","TIGR ID: PG1954","probable UDP-glucose 4-epimerase","Cytoplasm","Residues 3-330 show 26% similarity to AP000007, P. horikoshii probable UDP-glucose 4-epimerase. Residues 3-335 show 25% similarity to AJ248284, P.abyssi udp-glucose 4-epimerase (gale-1).","
InterPro
IPR001509
Family
NAD-dependent epimerase/dehydratase
PF01370\"[6-236]TEpimerase
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.720\"[3-257]Tno description
PTHR10366\"[8-264]T\"[294-336]TNAD DEPENDENT EPIMERASE/DEHYDRATASE
PTHR10366:SF17\"[8-264]T\"[294-336]TNAD DEPENDENT EPIMERASE/DEHYDRATASE


","BeTs to 10 clades of COG0451COG name: Nucleoside-diphosphate-sugar epimerasesFunctional Class: M,GThe phylogenetic pattern of COG0451 is AMTKYQVCEBRHUJ--o----Number of proteins in this genome belonging to this COG is 5","***** PF01370 (NAD dependent epimerase/dehydratase family) with a combined E-value of 2.4e-09. PF01370A 7-17 PF01370B 45-59 PF01370C 73-107 PF01370D 118-129 PF01370G 294-334","Residues 6-330 are 26% similar to a (PROTEIN OXIDOREDUCTASE DEHYDROGENASE REDUCTASE NAD NADP) protein domain (PD000038) which is seen in O59375_PYRHO.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","Fri Sep 14 12:56:17 2001","","","Mon Jun 4 15:17:45 MDT 2001","Thu Feb 15 12:07:55 MST 2001","Fri Sep 14 12:56:17 2001","Thu May 17 12:27:07 MDT 2001","Thu Feb 15 12:07:55 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 5-233 show 23% similarity to PG1318, a conserved hypothetical protein.","Tue Jun 5 12:03:24 MDT 2001","Thu May 17 12:27:07 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 4 to 335 (E-value = 2.4e-09) place PG1707 in the 3Beta_HSD family which is described as 3-beta hydroxysteroid dehydrogenase/isomerase family (PF01073)Residues 6 to 335 (E-value = 1.5e-08) place PG1707 in the Epimerase family which is described as NAD dependent epimerase/dehydratase family (PF01370)","Thu May 17 12:27:07 MDT 2001","34541557","","","","","","1","","","PG1954" "PG1708","2047603","2046311","1293","ATGCAATGGCAAGAACTTTACCGTCAGCGCGTTTGCTCTGCAGACGAAGCTGTCGTGGACTCTCTTAAACCGGGAACGAAAGTTGTATTCGGTCATGCTGCTGCTGCGCCTGTCCGTTTCTCTCAGGCTATGTACCGCCAGCGTGAAAAGTTGGAGAATATCACAGTTTTCCACATGTTGTATTTCGGCGACGCGCCGCACCTTGCTCCCGAAATGCGTTCGCATGTACACCCGACTCTCAACTTCCTTGAGGGCAACTCCCGTCCGGCAAGCCGTGACCGTCGTGTCGATTTCATTCCCTGCCACTTCCACGAGGTACCGGAACTGTTTCGTCAGGGATTCTTTCCATTGGATGTAGCCGTAGTGCAGGTATCTACTCCTAACGAAGAGGGTTATTGCTCTTTCGGAGTTTCCTGCGACTACACAAAGGCTGCCGCCGAGTGCGCTCCGGTAGTAGTAGCCGAGGTGAACAAGCAAATGCCATTCATCGGTGGTGAAAACCTGATTCACATCTCCAAACTGACCCATATCATCGAAGTGGACGAGCCGATTGCAGAAGTATTGCCTCCTGCTATCAGCGACCTTGAACTGAGGATAGGTCAGAATTGTGCCTCACTGATCAAAGACGGCGATACCCTCCAGTTGGGTATCGGCGGTATCCCCGACGCTGTGTTGCGTGCATTGGAAGGGCATAAAGATCTCGGTATTCACACGGAAATGTTTACCGACGGGGTGATGCGTATGATTCGCAAGGGGATTATCAACGGGAAGAAAAAAACATTGCATCCCGAAAAAGTCGTTACCTCGCTAATCTTCGGATCGAAAGAATTGTACGATTTTGTCAATAACAATCCGGTGATAGAATGCTATCCGGTGGATTATATCAACAACCCCGATGTTATCGGTAAGAATGACCGCATGGTTTCTATCAATTCCTGCTTGGAGATGGATCTCATGGGGCAGGCAGCTTCTGAGTCGATCGGGTACGAACAGTTCAGTGGATCCGGAGGTCAAGTCGATTTCCTTCGTGGGGCCAAGCGTTCCAAGGGAGGAATCTCCATTATGGCTTTCCCCAGTACGGCCAAGAAAGGGACTGAGAGTCGCATCGTTCCCATTCTGAAAGAGGGTGCTTGTGTCACGACCGGCCGTAACGAAGTGGACTATGTGGTGACGGAATATGGCGTAGCGCGTCTGCGTGGCGCAACGCTTCGTCAGCGTGCTGAAGCCTTGACTGCTATAGCACATCCCGATTTCCGACCGGCCCTTGAGGAGGAAATCCGCCGACGCTTCGAA","6.30","-5.26","47749","MQWQELYRQRVCSADEAVVDSLKPGTKVVFGHAAAAPVRFSQAMYRQREKLENITVFHMLYFGDAPHLAPEMRSHVHPTLNFLEGNSRPASRDRRVDFIPCHFHEVPELFRQGFFPLDVAVVQVSTPNEEGYCSFGVSCDYTKAAAECAPVVVAEVNKQMPFIGGENLIHISKLTHIIEVDEPIAEVLPPAISDLELRIGQNCASLIKDGDTLQLGIGGIPDAVLRALEGHKDLGIHTEMFTDGVMRMIRKGIINGKKKTLHPEKVVTSLIFGSKELYDFVNNNPVIECYPVDYINNPDVIGKNDRMVSINSCLEMDLMGQAASESIGYEQFSGSGGQVDFLRGAKRSKGGISIMAFPSTAKKGTESRIVPILKEGACVTTGRNEVDYVVTEYGVARLRGATLRQRAEALTAIAHPDFRPALEEEIRRRFE","2047602 2046310","TIGR ID: PG1956","4-hydroxybutyrate coenzyme A transferase (4-hydroxybutyrate CoA transferase)","Cytoplasm","Residues 1-430 show 52% similarity to L21902, C. kluyveri 4-hydroxybutyrate coenzyme A transferase.Residues 1-430 show 43% similarity to AJ250267, C. aminobutyricum 4-hydroxybutyrate coenzyme A transferase.","
InterPro
IPR003702
Family
Acetyl-CoA hydrolase/transferase
PTHR21432\"[1-431]TActCoA_hydro
PF02550\"[3-189]TAcetylCoA_hydro
noIPR
unintegrated
unintegrated
PTHR21432:SF11\"[1-431]TPTHR21432:SF11
SSF100950\"[7-183]T\"[193-431]TSSF100950


","BeTs to 4 clades of COG0427COG name: Acetyl-CoA hydrolaseFunctional Class: CThe phylogenetic pattern of COG0427 is A---y--ce------------Number of proteins in this genome belonging to this COG is 3","No significant hit to the Blocks database.","Residues 4-428 are 51% similar to a (TRANSFERASE PROTEIN A 4-HYDROXYBUTYRATE) protein domain (PD005956) which is seen in CAT2_CLOKL.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu May 17 12:34:45 MDT 2001","Thu Feb 15 12:18:37 MST 2001","Thu Feb 15 12:18:37 MST 2001","","Thu Feb 15 12:18:37 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 7-430 show 57% similarity to PG0623, 4-hydroxybutyrate coenzyme A transferase.","Thu Feb 15 12:18:37 MST 2001","Fri Mar 9 16:04:11 MST 2001","-58% similar to PDB:2OAS Crystal Structure of 4-hydroxybutyrate coenzyme A transferase (AtoA) in complex with CoA from Shewanella oneidensis, Northeast Structural Genomics Target SoR119. (E_value = 2.0E_86);-49% similar to PDB:2NVV Crystal Structure of the Putative Acetyl-CoA hydrolase/transferase PG1013 from Porphyromonas gingivalis, Northeast Structural Genomics Target PgR16. (E_value = 8.6E_21);-49% similar to PDB:2G39 Crystal structure of coenzyme A transferase from Pseudomonas aeruginosa (E_value = 4.1E_15);","","","Residues 3 to 431 (E-value = 1.8e-99) place PG1708 in the AcetylCoA_hydro family which is described as Acetyl-CoA hydrolase/transferase (PF02550)","Thu Mar 22 14:36:15 MST 2001","34541558","","","","","","1","","","PG1956" "PG1709","2047925","2047713","213","TTGTTGAAGGAGGGGCTGCCTCTTTTCTCTATACCTTCCATAGGCTGTCTTTTTCGAATGACGAGAAAAACTCTGTATCGAACCATCGGTCGGCTATTATCTATGGGTAGCTCCAAAGCATCAGGTGTCGGGCGGAATGTGGATGGCGAATTTGGCCTTTCATTTCTGAACGTTCTTGATCTTCACCCTTTTGAGTCTTCCAAAAAGATGTTG","10.80","5.17","7815","LLKEGLPLFSIPSIGCLFRMTRKTLYRTIGRLLSMGSSKASGVGRNVDGEFGLSFLNVLDLHPFESSKKML","2048041 2047712","TIGR ID: PG1957","hypothetical protein","Cytoplasm","No hit found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 12:26:55 MDT 2001","","Thu Jun 14 12:26:55 MDT 2001","Thu Jun 14 12:26:55 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:26:55 MDT 2001","Thu Jun 14 12:26:55 MDT 2001","","","Thu Feb 15 12:20:05 MST 2001","","Thu Feb 15 12:20:05 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Jun 14 12:26:55 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jun 25 15:37:16 MDT 2001","","","","","","","1","","","PG1957" "PG1710","2048498","2048313","186","ATGGCAAAGAAAGTAAAAGGCAATCGGGTGCAGGTTATCCTTGAATGCACCGAGCATAAGGAGAGTGGTATGCCGGGTATTTCTCGTTACATCACCACCAAGAATAGAAAAAATACGACTCAGCGTCTGGAACTCAAGAAGTACAACCCCATCCTGAGACGTATGACCCTTCATAAGGAAATCAAA","0.00","0.00","7321","MAKKVKGNRVQVILECTEHKESGMPGISRYITTKNRKNTTQRLELKKYNPILRRMTLHKEIK","","TIGR ID PG1959","50S ribosomal protein L33","Cytoplasm","Numerous significant hits using gapped BLAST to ribosomal protein L33, including several to chloroplast and cyanelle ribosomal protein L33 in eukaryotes. Residues 4-62 are 50% similar to gi|1016146|gb|AAA81233.1| (U30821) cyanelle ribosomal protein L33 in Cyanophora paradoxa and residues 6-62 are 54% similar to gi|13518354|ref|NP_084713.1| chloroplast ribosomal protein L33 in Oenothera elata. Prokaryotic protein similarities include residues 1-62 are 50% similar to gi|1001264|dbj|BAA10508.1| (D64003) 50S ribosomal protein L33 in Synechocystis sp. and residues 9-62 are 50% similar to gi|14247106|dbj|BAB57497.1| (AP003362) 50S ribosomal protein L33 in Staphylococcus aureus.","
InterPro
IPR001705
Family
Ribosomal protein L33
PD002595\"[9-62]TRibosomal_L33
PF00471\"[9-62]TRibosomal_L33
TIGR01023\"[1-62]TrpmG_bact


","BeTs to 11 clades of COG0267COG name: Ribosomal protein L33Functional Class: JThe phylogenetic pattern of COG0593 is ----yqvceBrhujgpolinx Number of proteins in this genome belonging to this COG is 1","","","Thu Jul 5 16:41:55 MDT 2001","Thu Jul 5 16:41:55 MDT 2001","Thu Jul 5 16:41:55 MDT 2001","Thu Jul 5 16:41:55 MDT 2001","Thu Jul 5 16:42:07 MDT 2001","Thu Jul 5 16:41:55 MDT 2001","Thu Jul 5 16:41:55 MDT 2001","Thu Jul 5 16:42:07 MDT 2001","Thu Jul 5 16:42:07 MDT 2001","Thu Jul 5 16:41:55 MDT 2001","Thu Jul 5 16:41:55 MDT 2001","Thu Jul 5 16:41:55 MDT 2001","Thu Jul 5 17:00:11 MDT 2001","Thu Jul 5 16:45:50 MDT 2001","Thu Jul 5 16:41:55 MDT 2001","Thu Jul 5 16:41:55 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Thu Jul 5 16:45:50 MDT 2001","Thu Jul 5 16:41:55 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 9 to 62 (E-value = 4.1e-21) place PG1710 in the Ribosomal_L33 family which is described as Ribosomal protein L33 (PF00471)","Thu Jul 5 16:41:55 MDT 2001","34541559","","","","","","1","Thu Jul 5 16:41:55 MDT 2001","","PG1959" "PG1710.1","2048756","2048520","237","ATGTCAAAGATTTGTCAGATTACCGGCAAAAAGGCAATGGTTGGCAACAACGTTTCTCACTCCAAGAGAAGGACAAAACGAGTATTCGATGTCAACTTGTTCAGAAAGAAGTTCTATTGGGTAGAACAGGATTGCTGGGTTGTTTTGAGGATATCGGCTGCCGGGCTGCGCCTCATCAACAAAATCGGTCTCGACGCTGCCATCAAGCGCGCGGCCGAGAAGGGCTTCTTAAACGCA","0.00","0.00","8993","MSKICQITGKKAMVGNNVSHSKRRTKRVFDVNLFRKKFYWVEQDCWVVLRISAAGLRLINKIGLDAAIKRAAEKGFLNA","","TIGR ID: PG1960","50S ribosomal protein L28","Cytoplasm","Numerous hits using gapped BLAST to 50S ribosomal protein L28, including residues 1-75 are 41-49% similar to gi|9971882|gb|AAG10444.1|AF279106_6 (AF279106 in an uncultured proteobacterium, gi|7225542|gb|AAF40766.1| (AE002389) in Neisseria meningitidis and gi|9106178|gb|AAF84016.1|AE003954_13 (AE003954) in Xylella fastidiosa.","
InterPro
IPR001383
Family
Ribosomal protein L28
PF00830\"[3-63]TRibosomal_L28
TIGR00009\"[1-58]TL28


","BeTs to 12 clades of COG0227 COG name: Ribosomal protein L28Functional Class: JThe phylogenetic pattern of COG0593 is ----yqvcebRhujgpolinx Number of proteins in this genome belonging to this COG is 1","","","Thu Jul 5 17:19:43 MDT 2001","Thu Jul 5 17:19:43 MDT 2001","Thu Jul 5 17:19:43 MDT 2001","Thu Jul 5 17:19:43 MDT 2001","Thu Jul 5 17:20:16 MDT 2001","Thu Jul 5 17:19:43 MDT 2001","Thu Jul 5 17:19:43 MDT 2001","Thu Jul 5 17:20:16 MDT 2001","Thu Jul 5 17:20:16 MDT 2001","Thu Jul 5 17:19:43 MDT 2001","Thu Jul 5 17:19:43 MDT 2001","Thu Jul 5 18:16:39 MDT 2001","Thu Jul 5 17:29:47 MDT 2001","Thu Jul 5 17:23:33 MDT 2001","Thu Jul 5 17:19:43 MDT 2001","Thu Jul 5 17:19:43 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Thu Jul 5 17:23:33 MDT 2001","Thu Jul 5 17:19:43 MDT 2001","-64% similar to PDB:2I2T Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA. This file contains the 50s subunit of one 70s ribosome. The entire crystal structure contains two 70s ribosomes and is described in remark 400. (E_value = 1.1E_11);-64% similar to PDB:2I2V Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA. This file contains the 50s subunit of one 70s ribosome. The entire crystal structure contains two 70s ribosomes and is described in remark 400. (E_value = 1.1E_11);","","","Residues 3 to 63 (E-value = 2.1e-21) place PG1710.1 in the Ribosomal_L28 family which is described as Ribosomal L28 family (PF00830)","Thu Jul 5 17:19:43 MDT 2001","34541560","","","","","","1","Thu Jul 5 17:19:43 MDT 2001","","PG1960" "PG1711","2051246","2048982","2265","ATGAGTCTTATCTTTACCGCCATTGTCGTATTTCTTTTCATCCTTGCTATATTCGACTTGATTGTGGGTGTCAGCAACGATGCGGTCAACTTCCTCAATTCTGCCATCGGAGCCAAGGCTGCTCCATTCAAGATCATCGTCGGTGTGGCAGCGTTGGGGGTTTTTTGTGGCGCAGCCATGAACAACGGCATGATGGAGATCGCCCGACACGGGATTTTCAGGCCGGAACATTACACTTTCAGCGAATTGATGGTCGTATTTCTGTCGGTGGTGATCACCGATGTCGTCCTGATGGATATGTTCAATTCGCTCGGCATGCCTACCTCTACGACCGTCTCGCTCATTTTCGAGCTGTTAGGCGGTTCTTTTTTTATGGCCATGACCAAGGTGGGCGGTACGGTCGGCTTTCAGGATCTTCTCAATACGGAGAAAGCTCTTTCCGTCATATTGGGTATCTTCCTTTCGGTGGGAATTGCTTTCTTCTTCGGGATGGTCGTTCAGTATCTGAGCCGTTTGCTCTTTACCTTTAATTACAGGCGGAATCTCCGATGGCTGGCCGGCCTTTTCGGCGGAGTTGCGGTTACATCCATCATTTATTTCATGCTCATCAAAGGGCTGAAGGGCGTGTCCTTTATGACCGAAGAATCCACGGCTTGGATAGCTGCCAATACGGGCAGGCTGGTATTGTACTGTCTGGTCGTTTCCATTATCCTGATGCAGGTGCTGTATTGGCTACGGGTCAATGTCTTCAAGGTGATCGTCCTCTTGGGTACCTTCGCTTTGGCGATGGCTTTTGCCGGCAACGACTTGGTGAACTTTATCGGTGTGCCGCTGGCCGGTTATTCCTCTTATTTGGACTTCAATGCCAACGGAAACGGGCAGTACGATACTTATCTGATGGGAGCCTTGAACGAACCGGCTTCCACTCCCGTATATTTCCTCGTGGCTGCCGGTATCGTAATGGTATATGCGCTGATTACATCGAAGAAGGCTCACAACGTGATCAAGACTTCGGTGGATCTGGCGCGTCAGGAGGAAGGTGAGGAGATGTTCGGCTCCTCGGGCTTGGCCCGGAGTATCGTGCGTTTCAGCACCACGACGGCCAATGCCGTGTCCCGTATAATTCCTCGTCCCGTAGGCCGGTGGATAGACAGTCGCTTCAATCAGGACGAACTGATCATGGCCAAGGGCGCGGCTTTCGATTTGGTGCGCGCTTCGGTCAATCTTGTTCTTGCCGGACTGCTCATCGCCTTCGGTACTTCGCTCAGGCTTCCCCTCTCCACCACCTATGTGGCTTTTATGGTGGCTATGGGTACTTCTTTGGCGGACAGGGCATGGAGCCGGGAGAGTGCGGTATTCCGCATCACGGGAGTATTCAGTGTGATAGGCGGTTGGTTTATCACTGCCGGTGCAGCCTTTATTCTCTGCTTCCTCGTTACGATGGTGAATCATTTCGGAGGCTATCCGGCGATGGCAGGAATGATCATCTTGGCGATCTTCCTGCTTGTCCGTAGTCATATTCGTTTCGATAAGAAGAAAAAGAGCGAAACGAAGGACACTGTCTTTATCGACATGATGGCTTCGCACGACAAAGAAGAGATTTGGCAACTGCTGGCCAAACATATTCGTCAGAAGCAGTTGGCTTTGCTCGACTTCGCCGAGAACAACTATATGCAGATGACCGATGGCTTCATCAACGAGGATTTGAAGAGGCTTCGCCGCTCGATCAACGACCAGAATGCGGAGCGGCAGATGCTCAAGGTGAACCGCAGGAAAGAAACCCTCGGCATCCGTCGGATCGAAGAAGCCAAGTCCGTGGTCAAGAATACATGGTTCCATCTCGGTTGTAATAGTTGCGAGCAAATCGTATTTTGTCTCAAGCGTATTGCCGAGCCGTGTAAGGAGCATGTGGACAACAACTTCAATCCGCTGCCCAAGGTCTGTGTATCCGAATTTCTTGCTGCACGCGAAAAACTCATTCTCTATATCAAAGAGGCCAAGCTGATCGTGTCCAACGAAACGGATGAGATCTTGGATCCGATGACTTACCGCGGCAAGGACATCAAGAAAGAGCTAAAGCAGCTTCGCAAGACACAGCTTAGCCGCATTCAGCAGGGGGCGAGCAGTCTGAAGATTTCTCTCGTCTATCTGAATCTCTTGCAGGAGTCGCAGCAGTTGGTGAATATATTGGACGATCTGATCCACGCCACGGAGAAGCTGTTCGACCCCGTAGCCCGGATCGGCACGGACGAAGAATTTTTCAAC","9.20","11.07","84082","MSLIFTAIVVFLFILAIFDLIVGVSNDAVNFLNSAIGAKAAPFKIIVGVAALGVFCGAAMNNGMMEIARHGIFRPEHYTFSELMVVFLSVVITDVVLMDMFNSLGMPTSTTVSLIFELLGGSFFMAMTKVGGTVGFQDLLNTEKALSVILGIFLSVGIAFFFGMVVQYLSRLLFTFNYRRNLRWLAGLFGGVAVTSIIYFMLIKGLKGVSFMTEESTAWIAANTGRLVLYCLVVSIILMQVLYWLRVNVFKVIVLLGTFALAMAFAGNDLVNFIGVPLAGYSSYLDFNANGNGQYDTYLMGALNEPASTPVYFLVAAGIVMVYALITSKKAHNVIKTSVDLARQEEGEEMFGSSGLARSIVRFSTTTANAVSRIIPRPVGRWIDSRFNQDELIMAKGAAFDLVRASVNLVLAGLLIAFGTSLRLPLSTTYVAFMVAMGTSLADRAWSRESAVFRITGVFSVIGGWFITAGAAFILCFLVTMVNHFGGYPAMAGMIILAIFLLVRSHIRFDKKKKSETKDTVFIDMMASHDKEEIWQLLAKHIRQKQLALLDFAENNYMQMTDGFINEDLKRLRRSINDQNAERQMLKVNRRKETLGIRRIEEAKSVVKNTWFHLGCNSCEQIVFCLKRIAEPCKEHVDNNFNPLPKVCVSEFLAAREKLILYIKEAKLIVSNETDEILDPMTYRGKDIKKELKQLRKTQLSRIQQGASSLKISLVYLNLLQESQQLVNILDDLIHATEKLFDPVARIGTDEEFFN","2051245 2048981","TIGR ID: PG1961","conserved hypothetical protein","Inner membrane, Cytoplasm","Several matches found in gapped BLAST to hypothetical proteins. E.g., this sequence is similar to BT2020.","
InterPro
IPR001204
Family
Phosphate transporter
PTHR11101\"[13-561]TPhos_transporter
noIPR
unintegrated
unintegrated
PTHR11101:SF16\"[13-561]TPTHR11101:SF16
SSF103473\"[409-519]TSSF103473


","BeTs to 8 clades of COG0306COG name: Phosphate permeaseFunctional Class: PThe phylogenetic pattern of COG0306 is AmtKy-V-EBRhuj----in-Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Dec 9 17:27:59 2003","Tue Dec 9 17:29:49 2003","Thu Feb 15 12:26:32 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Dec 9 17:27:59 2003","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541561","","","","","","1","","","PG1961" "PG1712","2052069","2051446","624","ATGGCCAAGTTTGTGATGAGAGAAATGCCCGATATGCAAGGCACGGGCAAGCGGACGATGTATCCGAAAATGATCAGCCGAGGCACGATGGGGCTGGACGAGATAGCCGATCTGATTTCCTCCCAATCGACATTCTCCCCGGGTGAAGTCAAAGGGTTGGTTACGGCCTTGGCTCGGACGATAGCCCACGGCGTGGCTTCGGGATATACGGTGAAGATAGAGGAGATCGGCTCTTTCTCCGCTTCGCTCACCTTGCACAAAGGCGTAGAACCCGAGGAGGCCGAAGGCGGCACACGCCGTAATGCCGCCAGCGTGACGATAGGAGGTGTCAATTTCCGCCCCGACAAGGCATTGATTCTCGAGGCTCGTACTCGCGTTCATCTGGTGCGAACTACGGTACGCCGTCCCCGTCGGCCCAATTTGACTCGCGAAGAGCGGCTGGCCTTGGCCTTGCGCCATCTCGATGGCCATAGTCTGCTCAAGGTGGCCGATTATTGCAGACTTACGGGGCTGGGACGTACCGCTGCCGCGGAAGAATTGCGCGCTTTCGATCGCGAGGGTCTGATCGACTCCACGGGGAGCGGCACGCATAAGGTATATATTATAAGGAACAAAGCCGGGATC","10.80","10.40","22685","MAKFVMREMPDMQGTGKRTMYPKMISRGTMGLDEIADLISSQSTFSPGEVKGLVTALARTIAHGVASGYTVKIEEIGSFSASLTLHKGVEPEEAEGGTRRNAASVTIGGVNFRPDKALILEARTRVHLVRTTVRRPRRPNLTREERLALALRHLDGHSLLKVADYCRLTGLGRTAAAEELRAFDREGLIDSTGSGTHKVYIIRNKAGI","2052068 2051445 [Shadowed by 2217]","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR005902
Family
Putative DNA-binding protein, HU-related
TIGR01201\"[1-196]THU_rel: DNA-binding protein, putative


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Feb 15 12:30:10 MST 2001","","Thu Feb 15 12:29:20 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 39-202 showed 29% similarity to PG0830, a hypothetical protein.","Thu Feb 15 12:29:20 MST 2001","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","17","" "PG1714","2052481","2053053","573","ATGCTCAACGATATTCAGAGAAGTGAAGCGAAGAAAGCCGCCGAAGTCATGCGCAAAGGCGGAATCATCCTTTACCCGACAGATACCATTTGGGGAATAGGCTGCGATGCCACGAACGAAGAAGCCGTCCAGCGGATTTACCGGCTGAAAGAAAGAGCGGACAGCAAGAGCATGCTTGTCCTCATCGATTCGGAAGCGAAGCTCCAAGGCCTCATGGACGAAGTGCCGGAGTTGGCCTGGGATCTGATCGAGCTGACGACCAAACCGCTGACCATCATCTATCCTCAGGCCAAAGGCGTGGCGCCGGCACTCATCGCTTCGGACGGATCGCTGGGCATTCGCCTGACGCGTGAAACCTTCTCTGCCGAGCTATGCAGACTGATGCGTGTCCCCATAGTCTCCACGTCGGCCAATATCAGCGGCCAACCCTCGGCACGGACTTTCGGCGAGATCGCTCCGGCCATCTTAGACGGTGTGGATTATATAGTGGAGTGCCGGCGCGAAGAGCCGGCCGGTCAGGCCTCTTCGATCATTCGACTCGGCACAAGGGGAGAAGTGGAGGTGATCCGCCAA","4.90","-4.13","20899","MLNDIQRSEAKKAAEVMRKGGIILYPTDTIWGIGCDATNEEAVQRIYRLKERADSKSMLVLIDSEAKLQGLMDEVPELAWDLIELTTKPLTIIYPQAKGVAPALIASDGSLGIRLTRETFSAELCRLMRVPIVSTSANISGQPSARTFGEIAPAILDGVDYIVECRREEPAGQASSIIRLGTRGEVEVIRQ","2052480 2053052 [Shorter 2220 202 99]","TIGR ID: PG1963","conserved hypothetical protein (possible SuA5 family protein)","Cytoplasm","This sequence is similar to CT137.Numerous moderately significant hits in gapped BLAST to conserved hypothetical protein; e.g. residues 7-190 are 36% similar to AE001051 of Archaeoglobus fulgidus, residues 5-163 are 35% similar to AE004441 of Pseudomonas aeruginosa, residues 11-180 are 33% similar to AE001752 of Thermotoga maritima.","
InterPro
IPR004388
Domain
Sua5/YciO/YrdC/YwlC
TIGR00057\"[1-190]TSua5_YciO_YrdC
InterPro
IPR006070
Domain
SUA5/yciO/yrdC, N-terminal
PF01300\"[15-184]TSua5_yciO_yrdC
PS51163\"[7-191]TYRDC
InterPro
IPR012200
Family
RNA-binding protein, YrdC
PIRSF004931\"[1-191]TRNA-binding_YrdC
noIPR
unintegrated
unintegrated
G3DSA:3.90.870.10\"[1-187]TG3DSA:3.90.870.10
PTHR17490\"[20-191]TPTHR17490
SSF55821\"[10-191]TSSF55821


","BeTs to 14 clades of COG0009COG name: Putative translation factor (SUA5)Functional Class: JThe phylogenetic pattern of COG0009 is amtkyqvCEbrH----olinxNumber of proteins in this genome belonging to this COG is 2","***** IPB000666 (SUA5/yciO/yrdC family) with a combined E-value of 8.9e-16. IPB000666A 22-53","Residues 13-190 are 36% similar to a (PROTEIN HYPF HYDROGENASE ZINC-FINGER MATURATION) protein domain (PD002209) which is seen in O29477_ARCFU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Mar 22 12:43:44 MST 2000","Thu Jun 7 16:08:33 MDT 2001","Mon Mar 26 13:12:42 2001","Mon Mar 26 13:12:42 2001","Mon Mar 26 13:12:42 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 7-136 show 23% similarity to PG1475, a possible translation factor.","Mon Mar 26 13:12:42 2001","Mon Mar 26 13:12:42 2001","-56% similar to PDB:1JCU Solution Structure of MTH1692 Protein from Methanobacterium thermoautotrophicum (E_value = 6.4E_18);-53% similar to PDB:1HRU THE STRUCTURE OF THE YRDC GENE PRODUCT FROM E.COLI (E_value = 8.3E_18);","","","Residues 15 to 184 (E-value = 1.3e-31) place PG1714 in the Sua5_yciO_yrdC family which is described as yrdC domain (PF01300)","Mon Mar 26 13:12:42 2001","34541562","","","","","","1","","17","PG1963" "PG1715","2053053","2054456","1404","ATGACACGTATGCAGCTACACCGCCTGCGCTATCTGCTGGCAGATGTCTTCGGTATTGTGGCTTCCTATTTGAGCTACAATACGCTGCGTTACCTCACGGAAGAGCAAGAGCGCATATACTCCACTCTGTCCGAATATCTCTTCAACGCCAAGAGCCTGTGGGTGGGGATCCTCTATCTGCTTTTCTGGCTCTCTCTCTTCGCCCTCTCGGGATACTACAACAAACCCATAGCCAAAAGCCGAATATCCGAACTGCTGACGACCGTGGCGTCGGTGCTGGTCGGATCCGTCGTCGTCTTTCTGCTGCTCGTGGTGGACGACATCGTACACGACACGGCGCTCTACCTGCGGCTCTTCTTTATGATGGTGGCGACTGTGTTGCCTTGGGTATATTTCCCCCGTCTATGGGTGACGACCTTCGGCATCAAAGAGCGAAAAAAGACAAAAGGTTATCATCGGGTGCTGCTCATCGGGAGCGGCACGATAGCCGAAGAGACGGCTTCGTGGCTGAAGTCCGTAAACGACATGGCCACCACGCGGCTCCACTTCGTCCCTCCGACGACGAGAGAGGGATTCGAGCAGTCGCTCAAGTCCTTTGCCACGCTTGTCGCCGAAGCGGTGCAAGAGAGCAAGCCCCATCAGATCATCCTCGCCGTGGATTGCCCCGATGCCAGCTTCATCAGTCTGCTCCTTTACCAGCTCTATCCCTTCCATATGCCGGTATGCGTGCCGATGCGCAGCATGCTTTTCGCCGGAGCCAAAGTAAATGTACAGGGGATGAAAGGAGAGCCTATGGTGGACATGACGGCCACCAACATGAGCGAATGCGCCAAGAGCATCAAGTGGTTCGCCGACCGGCTGTTCTCCCTTTTGATGTTGATTCTGCTGATTCCGGTCTATGCCGTGATCGCCGTTCTGGTCAAGCGTTCGTCGAGAGGCCCCGTCTTCTTCGGACAGGAGCGTATCGGACTTCACGGCCGGCCGTTTACGATCTATAAGTTTCGCACCATGTACCTCGATGCCGAGAAGGACGGCCCGAGTCTCAGCTTCGATGGCGATTCGCGGGTCACGCCCATCGGGCGCATCTTGCGCAAATACCGGATGGACGAATTGCCTCAGTTCTGGAATGTGCTTCGGGGCGATATGAGCTTCGTGGGGCCGCGCCCCGAACGGGCTTTCTACATCCGGCAGCTCGTGGAGCGTGCTCCCTACTACTACCTGCTGCACAATGTCCGTCCGGGCATCACCTCCTGGGGCATGGTACGATACGGCTATGCTTCCACTCCGGATGAAATGCTGGAACGCCTGCAATACGATTTTCTGTACTACGAGAATATGAGCCTCAGGCTGGATATAGAAGTACTGTTATATACTTGCCAAACGATTTTTAAAGGATTGGGGAAA","10.00","12.75","53976","MTRMQLHRLRYLLADVFGIVASYLSYNTLRYLTEEQERIYSTLSEYLFNAKSLWVGILYLLFWLSLFALSGYYNKPIAKSRISELLTTVASVLVGSVVVFLLLVVDDIVHDTALYLRLFFMMVATVLPWVYFPRLWVTTFGIKERKKTKGYHRVLLIGSGTIAEETASWLKSVNDMATTRLHFVPPTTREGFEQSLKSFATLVAEAVQESKPHQIILAVDCPDASFISLLLYQLYPFHMPVCVPMRSMLFAGAKVNVQGMKGEPMVDMTATNMSECAKSIKWFADRLFSLLMLILLIPVYAVIAVLVKRSSRGPVFFGQERIGLHGRPFTIYKFRTMYLDAEKDGPSLSFDGDSRVTPIGRILRKYRMDELPQFWNVLRGDMSFVGPRPERAFYIRQLVERAPYYYLLHNVRPGITSWGMVRYGYASTPDEMLERLQYDFLYYENMSLRLDIEVLLYTCQTIFKGLGK","2052851 2054455 [Bad Olap 2219 202 0]","TIGR ID: PG1964","probable glycosyltransferase","Inner membrane, Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 280-467 are 46% similar to gb|AAD52175.1|AF144879_14 unknown of Leptospira interrogans, residues 280-467 are 44% similar to gb|AAD12958.1| unknown of Leptospira borgpetersenii, residues 256-463 are 44% similar to gb|AAG01983.1|AF238861_3 putative glycosyltransferase of Lactobacillus rhamnosus.","
InterPro
IPR003362
Family
Bacterial sugar transferase
PF02397\"[281-468]TBac_transf


","BeTs to 4 clades of COG2148COG name: Sugar transferases involved in lipopolysaccharide synthesisFunctional Class: MThe phylogenetic pattern of COG2148 is ------vCeB-h---------Number of proteins in this genome belonging to this COG is 2","***** BP03658 (TRANSFERASE TRANSMEMBRANE EXOPOLYSACCHARIDE PR) with a combined E-value of 1.8e-39. BP03658A 281-306 BP03658B 313-337 BP03658C 351-398 BP03658D 422-468","Residues 305-421 are 48% similar to a (TRANSFERASE PROTEIN TRANSMEMBRANE) protein domain (PD001742) which is seen in Q9ZGL1_LEPBO.","","Thu Jun 14 12:27:06 MDT 2001","","Thu Jun 14 12:27:06 MDT 2001","Thu Jun 14 12:27:06 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:27:06 MDT 2001","Thu Jun 14 12:27:06 MDT 2001","","Mon Jun 25 15:36:05 MDT 2001","Mon Feb 12 13:06:01 MST 2001","Mon Jun 25 15:36:05 MDT 2001","Mon Feb 12 13:06:01 MST 2001","Mon Jun 25 15:36:05 MDT 2001","Mon Jun 25 15:36:05 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1715 is similar to PG1017, a probable glycosyltransferase. Residues 277-465 are 42% similar to PG1017. ","Mon Jun 25 15:36:05 MDT 2001","Thu May 17 12:39:00 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 281 to 468 (E-value = 5.5e-24) place PG1715 in the Bac_transf family which is described as Bacterial sugar transferase (PF02397)","Mon Jun 25 15:36:05 MDT 2001","34541563","","","","","","1","","17","PG1964" "PG1716","2055078","2056247","1170","GTGCCGCCGCCGTATCCTATATTATCACGGGGCAGGGAGCCATGTTGCTTTACGCTCAACGATCCTTTTTCGATGGATCGCATCCCCTATGCTCTGCTACTGGGTGTATTCTGCGGACTGGTATCTTTCTACTTCTCCAAGGTCATGTTCGTCTTCGAGAGCAAACTCAAGAACTTTCCACACTATCGCCAACGCTACCTCATATCGGCCTTTATCCTCTGCGGTCTGATCTTCCTTTTCCCTCCGCTATACGGTGAGGGCTACGATACGATCAACGCCCTGCTCGGCGGCCAGTACAGCTCTTTGATGGATGGCAGCCTGTTCGAGCCGTATTCCAATTCCTATTGGGTGCTGTTCGTTTTCCTCGGATTTATCATCATCACGAAGGTGTTCGCTTCCGTAGCCACCAATTCGGGCGGAGGCTGCGGCGGACTTTTCGCGCCCAGTCTGTTCATGGGGGCACTGAGCGGATTCATCTTTGCCTATGCGCTGAACTTCTTTCCCTTCATCGAGGTCTATCTGCCACAGAAAAACTTTGCTCTCCTCGGCATGGCCGGAGTGATGGCCGCGGTCATGCACGCGCCGCTGACAGGTATTTTCCTGATCGCCGAGCTGACCGGCGGATACAATCTTTTCCTTCCGCTCATGCTCGTGAGTACGAGTTCGTACGCCACTATCCGCCTTTTCATGCCGCACAGCATCTATTCGCTCCGTTTGGCACAGAAAGGAAAGCTGCTGACGCATCAGAAAGACAAGGCCGTGCTGACGCTTATGACGTTGGATGCGGTGATAGAAAAGGATTTCGAACCGGTGAGACCCGATATGACTCTGGGAGATGTCGTACACGTGTTCGGTATCAGCCATCGCAATGTCTTCCCCGTCCTGGACGAGAACAACCTGCTGATGGGGCTGGTATTGCTGGACAATATCCGCAATATCATGTTCCGGCCGGAGCTGTATGAGAGATTCAAGGTCAGCCGCTTCATGGTTTCTCCTCCGGCCAAAATAGTCAATACGATGTCCATGGAGACCATCATGCGAATCTTCGACGACACCAAGGCTTGGAACCTGCCCGTCATAGACGAGCAGGGATGTTATCTCGGATTCGTGTCCAAATCCAAGATCTTCAACTCTTACAGGGAGGTATTGGTGGAGACGTTCTCCGGCGAT","7.40","1.16","43852","VPPPYPILSRGREPCCFTLNDPFSMDRIPYALLLGVFCGLVSFYFSKVMFVFESKLKNFPHYRQRYLISAFILCGLIFLFPPLYGEGYDTINALLGGQYSSLMDGSLFEPYSNSYWVLFVFLGFIIITKVFASVATNSGGGCGGLFAPSLFMGALSGFIFAYALNFFPFIEVYLPQKNFALLGMAGVMAAVMHAPLTGIFLIAELTGGYNLFLPLMLVSTSSYATIRLFMPHSIYSLRLAQKGKLLTHQKDKAVLTLMTLDAVIEKDFEPVRPDMTLGDVVHVFGISHRNVFPVLDENNLLMGLVLLDNIRNIMFRPELYERFKVSRFMVSPPAKIVNTMSMETIMRIFDDTKAWNLPVIDEQGCYLGFVSKSKIFNSYREVLVETFSGD","2055077 2056246","TIGR ID: PG1965","possible chloride channel protein","Inner membrane, Cytoplasm","Residues 23-375 show 23% similarity to D90915, Synechocystis sp. chloride channel protein.Residues 40-381 show 25% similarity to AE000690, A. aeolicus hypothetical protein.This sequence is similar to BT3944.","
InterPro
IPR000644
Domain
Cystathionine-beta-synthase
PF00571\"[262-380]TCBS
InterPro
IPR001807
Family
Chloride channel, voltage gated
PTHR11689\"[17-383]TCHLORIDE CHANNEL
InterPro
IPR014743
Domain
Chloride channel, core
PF00654\"[5-230]TVoltage_CLC
noIPR
unintegrated
unintegrated
G3DSA:1.10.3080.10\"[22-255]Tno description
PTHR11689:SF14\"[17-383]TVOLTAGE-GATED CLC-TYPE CHLORIDE CHANNEL ERIC
signalp\"[1-85]?signal-peptide
tmhmm\"[28-46]?\"[67-85]?\"[115-135]?\"[145-165]?\"[179-201]?\"[211-231]?transmembrane_regions


","BeTs to 8 clades of COG0038COG name: Permease, putative chloride channelFunctional Class: PThe phylogenetic pattern of COG0038 is am-kyQ-CE-r----------Number of proteins in this genome belonging to this COG is 1","***** PR00762 (Chloride channel signature) with a combined E-value of 4.1e-06. PR00762D 141-161 PR00762E 177-193 PR00762F 195-214","Residues 40-223 are 28% similar to a (PROTEIN CHANNEL CHLORIDE VOLTAGE-GATED TRANSMEMBRANE) protein domain (PD001079) which is seen in O66749_AQUAE.","","","","","","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","","","","","Fri Jun 15 11:28:35 MDT 2001","Sat Jan 3 10:28:29 2004","Thu Feb 15 12:41:20 MST 2001","Mon Jun 25 15:31:32 MDT 2001","Mon Jun 25 15:31:32 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu May 17 12:44:42 MDT 2001","-42% similar to PDB:1KPL Crystal Structure of the ClC Chloride Channel from S. typhimurium (E_value = 1.1E_11);-42% similar to PDB:1KPK Crystal Structure of the ClC Chloride Channel from E. coli (E_value = 3.2E_11);-42% similar to PDB:1OTS Structure of the Escherichia coli ClC Chloride channel and Fab Complex (E_value = 3.2E_11);-42% similar to PDB:1OTT Structure of the Escherichia coli ClC Chloride channel E148A mutant and Fab Complex (E_value = 3.2E_11);-42% similar to PDB:1OTU Structure of the Escherichia coli ClC Chloride channel E148Q mutant and Fab Complex (E_value = 3.2E_11);","","","Residues 5 to 230 (E-value = 4e-05) place PG1716 in the Voltage_CLC family which is described as Voltage gated chloride channel (PF00654)","Mon Jun 25 15:31:32 MDT 2001","","","","","","","1","","17","PG1965" "PG1717","2057017","2056214","804","GTGGCTTTCTATCTGGGCAAGCTGCTGCTGAACGTCCTGATCAAGTGGCTCGATCGGATCATGGTTCGTCGTTCGTTCGAGCCGGCAGCGCGTACTTTCCTTCGCTCCTTTGCCAATATCGGGGGCTTTGTGCTGCTGATCGTCATCATTATCTCCACATTGGGTTTCCAACCGGTTTCGCTCGCGGCCTTGCTGGCTTCGGTGGGTGTGGCTGTCGGGATGGGTCTGAGCGGACAGCTTCAGAATCTGGCCGGCGGTCTGATCGTGCTGCTGACCAAACCGTTCAAAGTGGGGGACTACATCGTCTCCAACAATGTGGAAGGGGTCGTGGATGGCGTGACGCTTTTCCACACCACGGTAATGACGTTCGAGAACAAGTACATTTTCATCCCCAATGGCTTACTCAGCAGCAATGTGATCATCAACTACAGCCGCATGGCGGTGCGTCGGAACGAATGGATCATCGGGATCGAGTACAACGAGGACTTCGATCGGGTGAAAACGCTGCTGCTGCGTCTGATCGATGAGGAACCGCGTATTATCAAAGACCCCCTCCCCACCGTGGTCTTGAAGGAATTGGCCGACAGCTCTGTGAGGGTGATGGCACGTGCGTGGTGCGCGACGGACGACCTGTGGAATGTTTACTGGGATATAAACGAACGAATCTATAGCGAATTCAATCGTCAGGGTATAGCATTCCCGTTCCCGCAGCTTACGATACACGGATCCGCCGCCGGGCAGGAGCGAAGAGGGAAAAGTACGGAAGCTCAATCGCCGGAGAACGTCTCCACCAATACCTCCCTG","8.40","1.44","29895","VAFYLGKLLLNVLIKWLDRIMVRRSFEPAARTFLRSFANIGGFVLLIVIIISTLGFQPVSLAALLASVGVAVGMGLSGQLQNLAGGLIVLLTKPFKVGDYIVSNNVEGVVDGVTLFHTTVMTFENKYIFIPNGLLSSNVIINYSRMAVRRNEWIIGIEYNEDFDRVKTLLLRLIDEEPRIIKDPLPTVVLKELADSSVRVMARAWCATDDLWNVYWDINERIYSEFNRQGIAFPFPQLTIHGSAAGQERRGKSTEAQSPENVSTNTSL","2057208 2056213","TIGR ID: PG1966","conserved hypothetical protein (possible transport)","Inner membrane, Cytoplasm","Residues 5-241 show 39% similarity to AE000375, E. coli putative transport protein.Residues 5-240 show 36% similarity to AE004855, P. aeruginosa conserved hypothetical protein. Residues 4-241 show 32% similarity to A82318, Vibrio cholerae conserved hypothetical protein. ","
InterPro
IPR006685
Family
MscS Mechanosensitive ion channel
PF00924\"[35-234]TMS_channel
noIPR
unintegrated
unintegrated
signalp\"[1-55]?signal-peptide
tmhmm\"[36-56]?\"[61-81]?transmembrane_regions


","BeTs to 13 clades of COG0668COG name: Uncharacterized ACR, integral membrane protein, YjeP/UPF0003 familyFunctional Class: SThe phylogenetic pattern of COG0668 is aMtk-QvCEBRhUJ--ol--xNumber of proteins in this genome belonging to this COG is 1","***** IPB001880 (Uncharacterized protein family UPF0003) with a combined E-value of 5.3e-22. IPB001880A 66-101 IPB001880B 110-143","Residues 106-227 are 49% similar to a (PROTEIN TRANSMEMBRANE INTERGENIC REGION) protein domain (PD002444) which is seen in YGGB_ECOLI.Residues 81-237 are 24% similar to a (HYPOTHETICAL 53.8 KD PROTEIN) protein domain (PD084022) which is seen in P74608_SYNY3.Residues 80-178 are 29% similar to a (HYPOTHETICAL PROTEIN MJ0170 TRANSMEMBRANE) protein domain (PD124606) which is seen in Y170_METJA.","","Thu Jun 14 12:28:23 MDT 2001","","Thu Jun 14 12:28:23 MDT 2001","Thu Jun 14 12:28:23 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:28:23 MDT 2001","Thu Jun 14 12:28:23 MDT 2001","","","Fri Apr 6 16:56:20 MDT 2001","Mon Jun 25 15:28:44 MDT 2001","Thu Feb 15 12:52:05 MST 2001","Mon Jun 25 15:28:44 MDT 2001","Mon Jun 25 15:28:44 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Apr 6 16:56:20 MDT 2001","-54% similar to PDB:2OAU Mechanosensitive Channel of Small Conductance (MscS) (E_value = 7.6E_40);-69% similar to PDB:1EJ6 Reovirus core (E_value = 7.6E_40);-69% similar to PDB:2CSE Features of Reovirus Outer-Capsid Protein mu1 Revealed by Electron and Image Reconstruction of the virion at 7.0-A Resolution (E_value = 7.6E_40);-53% similar to PDB:1J8M Signal Recognition Particle conserved GTPase domain from A. ambivalens (E_value = 7.6E_40);-53% similar to PDB:1J8Y Signal Recognition Particle conserved GTPase domain from A. ambivalens T112A mutant (E_value = 7.6E_40);","","","Residues 36 to 234 (E-value = 5.1e-61) place PG1717 in the MS_channel family which is described as Mechanosensitive ion channel (PF00924)","Mon Jun 25 15:28:44 MDT 2001","34541564","","","","","","1","","17","PG1966" "PG1718","2057311","2058195","885","ATGACGGATAGATTCCTGCACATCCTTCGGCTTTCGGCCCTTTGCCTGCTCTTTTCGGCCCTTCTGCCACCGCTCTTCGGACAGCCAACCACCGCCCGACAGGACAGCCTGCCGGCAGACTACACACGGCTCATCGACCGCTCCTTCGAAGCCCTCGGACAGGGCAACCTCGAGCTGGCCGAGCAAGCACTCCGTCAGGCCATCAAAGCCTATCCCGACTTGCCCTCCGGCTATGCCCTGATGAACAACCTCGGTGCCATCCAGCAGAGACAGGGCAAGCCGGAAGAAGCGCTGCTCACCTACAGCGCAGCCCTGCAAAAGCTCCCTGACGACAAGCTCCTGCGCACGAACAGAGCCATGCTCCTGACCGAAATGGGACGAACGGACGAAGCCATATTCGACTACAACGAACTACTCAGGGCAGAGCCGGACAACGAGATCTTCCACTACGGCAGAGCCATGCTCTATCTGGCCAAAGGAATGTACGGCGATGCCGAGTCGGATCTGGAAGAAATCCTCCGCGTCAATGACTCCTCGCTCAAAGCCCGTCTCGGCATCGCCCTGGTGGCAACGATGAAAGGCGAATACGACAAAGCCGAACGGCTCTACAACTACGTGATAGACAAACTCCCGAAAAACGCCGCAGCCTACGAAGGGCGCGCCCGCCTCTTCCTGAACAAGGGAATGAAAGGCTACGCCCTGCGCGACATCAACAAAGCCTTCGAATACGCCACACCGCCTGCCGCCTCCCTCTTCGTGCTGCGAGGCGAGATCAACGCCGCCATAGGCGACAAGAAAGCGGCGGCCGAGGATTACGCCGTGGCCGAGAGTCGCGGCTATAGCAAGGAGAGCCTCGACGTCCTACGCGCAGCCCTCCGCAAACAG","6.60","-0.55","32896","MTDRFLHILRLSALCLLFSALLPPLFGQPTTARQDSLPADYTRLIDRSFEALGQGNLELAEQALRQAIKAYPDLPSGYALMNNLGAIQQRQGKPEEALLTYSAALQKLPDDKLLRTNRAMLLTEMGRTDEAIFDYNELLRAEPDNEIFHYGRAMLYLAKGMYGDAESDLEEILRVNDSSLKARLGIALVATMKGEYDKAERLYNYVIDKLPKNAAAYEGRARLFLNKGMKGYALRDINKAFEYATPPAASLFVLRGEINAAIGDKKAAAEDYAVAESRGYSKESLDVLRAALRKQ","2057310 2058194","TIGR ID: PG1967","conserved hypothetical protein (possible O-linked-GlcNAc transferase homolog)","Periplasm, Cytoplasm","Residues 36-253 show 26% similarity to AE000710, A. aeolicus conserved hypothetical protein aq_854. Residues 55-268 show 25% similarity to AC016829, A. thaliana putative O-linked GlcNAc transferase ","
InterPro
IPR001440
Repeat
Tetratricopeptide TPR_1
PF00515\"[54-74]T\"[78-111]T\"[146-179]T\"[180-213]TTPR_1
InterPro
IPR011990
Domain
Tetratricopeptide-like helical
G3DSA:1.25.40.10\"[38-275]TTPR-like_helical
InterPro
IPR013026
Domain
Tetratricopeptide region
SM00028\"[41-74]T\"[78-111]T\"[112-145]T\"[146-179]T\"[180-213]T\"[214-247]TTPR
PS50005\"[41-74]T\"[78-111]T\"[112-145]T\"[146-179]T\"[180-213]TTPR
PS50293\"[41-247]TTPR_REGION
InterPro
IPR013105
Repeat
Tetratricopeptide TPR_2
PF07719\"[112-145]TTPR_2
noIPR
unintegrated
unintegrated
PTHR23083\"[65-273]TPTHR23083
PTHR23083:SF20\"[65-273]TPTHR23083:SF20
SSF48452\"[23-275]TSSF48452


","BeTs to 12 clades of COG0457COG name: TPR-repeat-containing proteinsFunctional Class: RThe phylogenetic pattern of COG0457 is AMTKYQVCEB-HUJ--OLINXNumber of proteins in this genome belonging to this COG is 21","No significant hit to the Blocks database.","Residues 50-253 are 26% similar to a (PROTEIN REPEAT TPR DOMAIN NUCLEAR PUTATIVE RECEPTOR) protein domain (PD000069) which is seen in O67021_AQUAE.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu May 17 12:51:15 MDT 2001","Thu Feb 15 13:00:27 MST 2001","Thu Feb 15 13:00:27 MST 2001","","Thu Feb 15 13:00:27 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 92-275 show 27% similarity to PG0878, O-linked GlcNAc transferase.","Tue Jun 5 12:04:04 MDT 2001","Thu May 17 12:51:15 MDT 2001","-44% similar to PDB:1W3B THE SUPERHELICAL TPR DOMAIN OF O-LINKED GLCNAC TRANSFERASE REVEALS STRUCTURAL SIMILARITIES TO IMPORTIN ALPHA. (E_value = 9.4E_10);","","","No significant hits to the Pfam 11.0 database","Thu May 17 12:51:15 MDT 2001","34541565","","","","","","1","","17","PG1967" "PG1719","2058263","2058541","279","TTGTCTGCTGATGACACAGGTGAAAAGCATTACATTTGTAATCATCAAAGGATGAAAAGCAACTTAATTGCAAAAAATCTTTTTAGCGGGCTTATTATCATGGATAAATCACAACTAAGCAAACTCAGAAAAAGGTTTTCCCTGTATCTGCTTGTGGGAATAGCCTTATACCTTTTCAAGGTAATCAATTTCGATTCTTATTGGGGAATATCTTTTTTCGTTTTATGGTCGATAGGCCTTTTAGCGGCCGTGATCAATGCCATTAAATCCCCCAAAAGC","10.60","7.41","10568","LSADDTGEKHYICNHQRMKSNLIAKNLFSGLIIMDKSQLSKLRKRFSLYLLVGIALYLFKVINFDSYWGISFFVLWSIGLLAAVINAIKSPKS","2058262 2058540","NO TIGR ID corresponds to this gene.","hypothetical protein","Inner membrane, Cytoplasm","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
tmhmm\"[46-64]?\"[70-88]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Feb 15 13:02:35 MST 2001","","Thu Feb 15 13:02:35 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","17","" "PG1720","2059608","2058709","900","ATGGCATTCGCCCAAGTTCCCAAAGGAAATGACAAGTCTAAAGACGAACACATCCTTACGTGGGCGTTGCCGGAAGAGTTGGTGATCGATAATAACAGTATTGTAGCTACTTATAATTCTTTATTGACTCCATTTAATGGAATGACCATGGCCTGCGCTTCTTTCTTCGATGTGCAGGATTTGTTGCCTTATGTGGGCTATACGATCAATAGAATAGACTTCCACCCTACGGCAGATGAGAAGAACTATGAGCAGGTGGCAGCCAGCAAGTTCTACATCTGTATATGGGGCAATAAGGAACAGACAGAAGTCCTGTACGAGCAGGCTCTGCCCACGATCCACAAGGAGGATTTGAGCTTTGGCTATGGAGTGGACGGCGAGGAAGACTATTACGATGAGCCGATGTACCTTGCCGAACTGGAAACGCCCTTTGTGATTCCTGCCGGGAAAGCTCTCTATATCGGCTGCCGCGTGGAGACGCAAGAGGGGCATGCCGTAGGTTTCGGACTGGATGACGGCCCTGCGATGAAAGGCAAGGGCGATCTGGTCGGGAGCTATCTTCCCGGTGCTGCTCCGATGCCTTTTGTCCCGCTTTCTGATATTCCGGCTCGTTCGATGGATGCCAATTTTTATATCTATTCTCGTATTTCACTGGGTTCGGGCACGCAGGATGTTCTCCAGCATAGGATGAAAGTGTATCCCAACCCTGCCACGACGGAGCTGCATGTGGAAGCCCTGTCCGCATGGGTGGGCGAGCAGGCTGCGGTATATGATATGCGTGGTCGTCGGGTATCGGCTCGGACGGTGGATAGCGAGAAGCTGTGCATCGACATTGCCTCACTGCCCGTGGGCGTCTATATGCTGCGCATCGGCAGCTACTCGGCCAAGTTCGAGAAGAGA","4.50","-15.73","33304","MAFAQVPKGNDKSKDEHILTWALPEELVIDNNSIVATYNSLLTPFNGMTMACASFFDVQDLLPYVGYTINRIDFHPTADEKNYEQVAASKFYICIWGNKEQTEVLYEQALPTIHKEDLSFGYGVDGEEDYYDEPMYLAELETPFVIPAGKALYIGCRVETQEGHAVGFGLDDGPAMKGKGDLVGSYLPGAAPMPFVPLSDIPARSMDANFYIYSRISLGSGTQDVLQHRMKVYPNPATTELHVEALSAWVGEQAAVYDMRGRRVSARTVDSEKLCIDIASLPVGVYMLRIGSYSAKFEKR","2059733 2058708","TIGR ID: PG1969","hypothetical protein","Cytoplasm","Residues 230-300 have 36% similarity to AF153770, P. gingivalis immunoreactive 47 kDa antigen PG97.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 12:29:07 MDT 2001","","Thu Jun 14 12:29:07 MDT 2001","Thu Jun 14 12:29:07 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:29:07 MDT 2001","Thu Jun 14 12:29:07 MDT 2001","","","Thu Jun 14 12:34:18 MDT 2001","Mon Jun 25 15:20:31 MDT 2001","Thu Feb 15 13:09:50 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 46-296 have 26% similarity to PG1570, a hypothetical protein.Residues 230-300 have 36% similarity to immunoreactive antigen PG1208.","Mon Jun 25 15:20:31 MDT 2001","Tue Jun 5 12:09:10 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jun 25 15:20:31 MDT 2001","34541567","","","","","","1","","17","PG1969" "PG1721","2060145","2061263","1119","GTGTCACTTGACACTGCTACCAATAACAGATTAATAATCAATCAAATACAACAAAAAAAAGAAACACAAATGACTGTAGAAAATTTGCGTCTGCAGCGGCTCCAAAATTTGGAGCACTACCGTTTTGCCAAGAATGTGCTGACGCTCTGTCGCACGGCAAATATCGCTAAACTGAATCCCAAACTGCCCGAGCTGGAAAAGGCTATCGAAATGGAGGATTTGGCTCTGAATCCGCCCGTCGCGAACGAGCTGACGCCTCAGGTCATAGCCCTCGACGAGGAACGCGACAGAGCCTATCAGGCGCTGATGTCGCGCGTGCGTTCGTATGCTTTCGACGAGGACAGCCAGCTGCGCAACGCGGCAGCCAGAATCGAAGACGTGGCCGCTCGCTACGGCAACGTGATCCGAATGAACTATGACAAGGAGACGGCCGCGATAGAGAATTTCCTCACCGATCTCAAGGGCGAGAACATTCGCCCCCTCGTAACGAAACTCGGCGTGACGGCACTCGTTGACAGACTGGAAAAGAACAATAAGGCCTTCGCCGACTTCTTCCTCCGCCGTCTGAGCACCGACCAACGAGGCAAATATGACGTGAAGGCACTCCGTGCCGAGACCGACCGCACATTGGTAGCCGTGGTGCGCCGCATGGACTCCATCGACGACATGGAGCCGAGCCCGGAGATCCGTGCGCTCATCGAGCTCTACAACCGACTCGTGGCCAATCGCCGCGCCCTCTTGGCTCGTCGCGCCAGCTACGGAGAAGCAGCCGTGGAGAAGCGTCGTGCCGAGATCGCCGAGATGCTCCGCCCCCTGCTCGCCCGGATCGTGGAGGAGAAGAAGACGGCCGTCTTTGCCGGTCGCACCCTCGGCACGGGCAAGAACCGCCACTATCTCATCACATTCGTAGCCGAGAACGGCGACGAGGAGGATCGCTGGTACCGCATCAACGGGGAGCAACTCGTCTATGTGCCCGAAGACGAACTCCCCAAGCCGAAGAAAAAGAAGAAACCCGCAAGCAGCACGGACACTCCATCCGAGCCGCCCGTCCTGCCGGATCCATCGCAAGGAGGCAGCAGTAGCGGCGGTGGCGAGCAAGGCTCTACCGGCGGCGGACTC","9.40","3.48","42021","VSLDTATNNRLIINQIQQKKETQMTVENLRLQRLQNLEHYRFAKNVLTLCRTANIAKLNPKLPELEKAIEMEDLALNPPVANELTPQVIALDEERDRAYQALMSRVRSYAFDEDSQLRNAAARIEDVAARYGNVIRMNYDKETAAIENFLTDLKGENIRPLVTKLGVTALVDRLEKNNKAFADFFLRRLSTDQRGKYDVKALRAETDRTLVAVVRRMDSIDDMEPSPEIRALIELYNRLVANRRALLARRASYGEAAVEKRRAEIAEMLRPLLARIVEEKKTAVFAGRTLGTGKNRHYLITFVAENGDEEDRWYRINGEQLVYVPEDELPKPKKKKKPASSTDTPSEPPVLPDPSQGGSSSGGGEQGSTGGGL","2060144 2061262 [Shorter 2233 1086 99]","The hagC gene is PG1724 and the hagA gene is PG1602.TIGR ID: PG1972","hemagglutinin hagB","Cytoplasm","This sequence corresponds to the previously sequenced Z35494 in GenBANK, a predicted hagB hemagglutinin gene.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 24-329 are 94% similar to a (HEMAGGLUTININ PROTEIN HAGB HAGC) protein domain (PD040602) which is seen in Q51828_PORGI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Tue Dec 12 13:03:06 MST 2000","Mon Mar 26 13:21:56 2001","Tue Jun 5 12:14:22 MDT 2001","Thu Dec 7 15:07:20 MST 2000","","Mon Mar 26 13:21:56 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1721 is essentially identical to PG1724, hemagglutinin hagC. Residues 26-372 show 24% similarity to PG0405, a conserved hypothetical protein (possible hemagglutinin protein).","Tue Jun 5 12:14:22 MDT 2001","Mon Mar 26 13:21:56 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Mar 26 13:21:56 2001","34541569","","Lepine,G. and Progulske-Fox,A.Duplication and differential expression of hemagglutinin genes inPorphyromonas gingivalis.Oral Microbiol. Immunol. 11 (2), 65-78 (1996)Progulske-Fox,A., Tumwasorn,S., Lepine,G., Whitlock,J., Savett,D., Ferretti,J.J. and Banas,J.A.The cloning, expression and sequence analysis of a secondPorphyromonas gingivalis gene that codes for a protein involved in hemagglutination.Oral Microbiol. Immunol. 10 (5), 311-318 (1995)","","Thu Dec 7 15:36:00 MST 2000","","1","","17","PG1972" "PG1722.1","2062078","2061413","666","ATGGAAACAATCAGAAAAATAACAAAGTGGTATTTGTTTGTTTTTGCGCTTTTAGCCATAACAATACCTTCGCTTGCGCAAGAAACAAGCAAATCTGAAGGGCTTATCCTAAGTAGCTCTTTTAGGATGGGAGTTCCAATGTTAGTGTCCAACTTGTCTTTATTGGATGAGCGTGCTCCATTAGCAAATAATCCCGGAGTAGCTGCGTCTGTAGAATTAAGCTACAAGAAGTTTGCAGATCGCACAAGTTTAGGTCTGTTAGTAGATCTAGGTCTCTATAATAACAGAATTGCAAGTTTTATCTCTGGCAACAACATTGGGATAGAGAATAATGTGTTTAACACATTTGCTGGCATAGTGATTCGCCATTATCATATTGATAATGATCGAATTGAATTGGCTGCTCCTATTGCCATTGGGTATATGCATACTTGGAATTTCGAAGATCGGCAAGACCTCGCAGGTGGTGTAATATCTAGAACCAAGAGCATGGGTGCTTTCGCGATGACAGCAGGAATGGAACTCGGTTTCAAAGTGAAAGAGGGTAAATGCATTGGAGCCAAAGTCGATTTATCAGCAGCTGTCGGTAAAAGCATGGTTGACGCAAGTAAGAAAATGCGTTGTTGGCTAAGTCCTAGCATAGGACTTTTCTTTAGACATAGTTTG","","","24299","METIRKITKWYLFVFALLAITIPSLAQETSKSEGLILSSSFRMGVPMLVSNLSLLDERAPLANNPGVAASVELSYKKFADRTSLGLLVDLGLYNNRIASFISGNNIGIENNVFNTFAGIVIRHYHIDNDRIELAAPIAIGYMHTWNFEDRQDLAGGVISRTKSMGAFAMTAGMELGFKVKEGKCIGAKVDLSAAVGKSMVDASKKMRCWLSPSIGLFFRHSL","","NO TIGR ID corresponds to this gene.","hypothetical protein","Inner membrane, Outer membrane, Cytoplasm","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-26]?signal-peptide
tmhmm\"[10-30]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Thu Feb 15 13:14:45 MST 2001","","Thu Feb 15 13:14:45 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","17","" "PG1723","2063148","2062060","1089","ATGCAGAATGCGCAAAGTGAAAAAAAATTGAAGATTTTTTTTGATGGAAATAAAATTTTTCTACTTTTGCCCCGCATTTCCAAATTCCGGATAAGGAGGTGTAGAAATATAATCCCAAAATATAGTAAGATGAAAAAATCTTTTGTCGTAGGTGCAAGCTTGTGCATAGCTGCGATCTTTTCTTTGGTTTCATGTTCCAAACAAGAAATCGAAGAAGTACGAGTAATGGAAAATGAGACAATCAAAACGGACTTGCCTCAAGCACGTTCAATCGAAGACAGCGTTGCCTTAGCTGAACTTGTTTTAGATTTAGAAACTTATAATAGCTCTTTGGATAGTGATGGGCGGAGTACATACTCTGCAGGTCAACAAACTTTTTCTGTTGAAGGGCAATTGATGAACAATAGAAGTTTCTGGAGTTTCTTCAAGAAAATCGCTAAGGCTGTTGCAGTTGTATCTGCTGATGCAATTGGAGTTTGTGTTGGTTCTACCATCCATCCTGCAATGGGAGTAGCATTTTGTGCAACTGCATCAGCTGGGACATCTGTATTATTGGATGCTGACATAAACGTCAGCTTTCTCAAAGAATCGTTTGGTCCTGATATTACACGCAGTAATTATGGTGTCTGGCACAACAATACTATTGCTGCCTATCTGAATGAACATGGTTCTTTAACAAATTTGGACCCACTTCAATTTTACAATTACAGTCTGACTTACTGTAGTAACAATATCGGTTCATCGACCTCTCGTCCTCTTCCTTATGAGAAGGTTGAGACTCTATGCTCTGCATTGGCTCAATTATTCACATCATTGGAAAACGACAATTCCGAGAAAACGGAAGAAGAGATTTGCAATATGATTGTTTCTGCTGTTCCCGAAATCAGAGCGCAAGAAGTGAAAATATTGCTAAACTTTCTCCTCAAGATGTATTCCCCTGATTTTAAGGTAGAAAAACGACGTGAATACATTGCTGGTCATACAGAAGTAGTCTTCCAATCCAGACTGAGTGAAGCAGGGAAAAAGCGTATTTATGACATGTTATCAGTCGCTTGTAATAGTTCATTATTATGGAAACAATCAGAAAAA","7.50","1.56","40538","MQNAQSEKKLKIFFDGNKIFLLLPRISKFRIRRCRNIIPKYSKMKKSFVVGASLCIAAIFSLVSCSKQEIEEVRVMENETIKTDLPQARSIEDSVALAELVLDLETYNSSLDSDGRSTYSAGQQTFSVEGQLMNNRSFWSFFKKIAKAVAVVSADAIGVCVGSTIHPAMGVAFCATASAGTSVLLDADINVSFLKESFGPDITRSNYGVWHNNTIAAYLNEHGSLTNLDPLQFYNYSLTYCSNNIGSSTSRPLPYEKVETLCSALAQLFTSLENDNSEKTEEEICNMIVSAVPEIRAQEVKILLNFLLKMYSPDFKVEKRREYIAGHTEVVFQSRLSEAGKKRIYDMLSVACNSSLLWKQSEK","2063147 2062059","TIGR ID: PG1974","hypothetical protein","Outer membrane, Periplasm","This sequence corresponds to gi:34397887 in Genbank.","
noIPR
unintegrated
unintegrated
tmhmm\"[48-66]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Feb 15 13:15:47 MST 2001","Wed Mar 9 10:03:09 2005","Thu Feb 15 13:15:47 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 9 10:03:09 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541570","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Wed Mar 9 10:03:09 2005","","1","","17","PG1974" "PG1724","2063361","2064410","1050","ATGACTGCAGAAATTTTCTCGTTTTCCCGGCTCCAAAATTTGGAGCACTACCGTTTTGCCAAGAATGTGCTGACGCTCTGTCGCACGGCAAATATCGCTAAACTGAATCCCAAACTGCCCGAGCTGGAAAAGGCTATCGAAATGGAGGATTTGGCTCTGAATCCGCCCGTCGCGAACGAGCTGACGCCTCAGGTCATAGCCCTCGACGAGGAACGCGACAGAGCCTATCAGGCGCTGATGTCGCGCGTGCGTTCGTATGCTTTCGACGAGGACAGCCAGCTGCGCAACGCGGCAGCCAGAATCGAAGACGTGGCCGCTCGCTACGGCAACGTGATCCGAATGAACTATGACAAGGAGACGGCCGCGATAGAGAATTTCCTCACCGATCTCAAGGGCGAGAACATTCGCCCCCTCGTAACGAAACTCGGCGTGACGGCACTCGTTGACAGACTGGAAAAGAACAATAAGGCCTTCGCCGACTTCTTCCTCCGCCGTCTGAGCACCGACCAACGAGGCAAATATGACGTGAAGGCACTCCGTGCCGAGACCGACCGCACATTGGTAGCCGTGGTGCGCCGCATGGACTCCATCGACGACATGGAGCCGAGCCCGGAGATCCGTGCGCTCATCGAGCTCTACAACCGACTCGTGGCCAATCGCCGCGCCCTCTTGGCTCGTCGCGCCAGCTACGGAGAAGCAGCCGTGGAGAAGCGTCGTGCCGAGATCGCCGAGATGCTCCGCCCCCTGCTCGCCCGGATCGTGGAGGAGAAGAAGACGGCCGTCTTTGCCGGTCGCACCCTCGGCACGGGCAAGAACCGCCACTATCTCATCACATTCGTAGCCGAGAACGGCGACGAGGAGGATCGCTGGTACCGCATCGACGGGGAACAACTCGTCTATGTGCCCGAAGACGAACTCCCCAAGCCGAAGAAAAAGAAGAAACCCGCAAGCAGCACGGACACCCCATCCGAGCCGCCCGTCCTGCCGGATCCATCGCAAGGAGGCAGCAGTAGCGGCGGTGGCGAGCAAGGCTCTACCGGCGGCGGACTC","7.50","0.48","39313","MTAEIFSFSRLQNLEHYRFAKNVLTLCRTANIAKLNPKLPELEKAIEMEDLALNPPVANELTPQVIALDEERDRAYQALMSRVRSYAFDEDSQLRNAAARIEDVAARYGNVIRMNYDKETAAIENFLTDLKGENIRPLVTKLGVTALVDRLEKNNKAFADFFLRRLSTDQRGKYDVKALRAETDRTLVAVVRRMDSIDDMEPSPEIRALIELYNRLVANRRALLARRASYGEAAVEKRRAEIAEMLRPLLARIVEEKKTAVFAGRTLGTGKNRHYLITFVAENGDEEDRWYRIDGEQLVYVPEDELPKPKKKKKPASSTDTPSEPPVLPDPSQGGSSSGGGEQGSTGGGL","2063360 2064409 [Shadowed by 2236]","TIGR ID: PG1975","hemagglutinin hagC","Cytoplasm","This sequence corresponds to the previously sequenced PGHAGCG (Z27394) in GenBANK, a predicted hagC gene.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 1-306 are 94% similar to a (HEMAGGLUTININ PROTEIN HAGB HAGC) protein domain (PD040602) which is seen in Q51830_PORGI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Mon Mar 26 13:27:32 2001","Mon Mar 26 13:26:07 2001","Tue Dec 12 13:01:58 MST 2000","Thu Dec 7 15:03:58 MST 2000","","Mon Mar 26 13:26:07 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1724 is essentially identical to PG1721, hemagglutinin hagB. Residues 4-349 are 24% similar to PG0405, a possible hemagglutinin protein.","Tue Jun 5 12:18:48 MDT 2001","Mon Mar 26 13:26:07 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Mar 26 13:27:32 2001","34541571","","Lepine,G. and Progulske-Fox,A.Duplication and differential expression of hemagglutinin genes inPorphyromonas gingivalis.Oral Microbiol. Immunol. 11 (2), 65-78 (1996)","","Thu Dec 7 15:03:58 MST 2000","","1","","17","PG1975" "PG1726","2066786","2064783","2004","ATGAAGCCTCTACTGACGGTCGTTTGTGCTATTATTCTCCTCTCCTTGCCTCTCGGTGGGCAGACGGTGGTGCCCGAATGGGATGAATACATAGCAGAGCAGATAGAATCAGGTGCACTCGGGGAGGACGAGGGAGCCGAATTTCTGGAACGGTGGATGGTGCAGAAGCAGCATCCGCTGGACATCAATACCCTTACCCGGGAGGACTTGGAGCAATTCCCCTTTCTCAATGAGTTTCAGATCCGCCGTTTCCTGCTCTACCGACATGCTCATCCCGAGGGGTTCGACAGCATTTGGGTGCTGAGTGAGATTGCCGGCTGGGACAGACGTACCTGTCTGCTCTTGTGGCCGATGCTGACGGTGCAGAAGCGGAGCGAGTCGGCTGCCGCCTCTTTTCGCGAGATCCTGTCTTATGCCCGTCACGATGTATCGGTGCATACCGATGCCATCCTCCAGCAGCAGGAGGGCTACCGTCCGGATAGCCGGCATCCGTATCGGGGCGATCCGTGGGGTGGCGGTTTGCGCTGGAGCTACGCTATGGGCAATCGTTTTTCCTTAGGCCTTACTGCGTCCAAAGACCGGGGAGAACCGGCCTTCGATAAGCGGCGAAAGGGCTTCGACAGCTATTCCGCCCACTTCTTCATGGAAGGGAAGGGGGCTGTGCGAGCCGTGGCACTCGGAGACTATCGAATAGGGATGGGATACGGCCTGCTCGTCAATCAGGCCTCTTTCATGGGAATGGCCTACGCCTATCCTCGTGGCGGAACCACGCTGCGACGTGCGTTTACCTATGCCGAGGACAACTTCATGCGCGGGGCCGCTACCGCTCTTGCACAAGGACGATGGGCACTGACGGCATTTTATTCGCGCCAGGGGATCGACGCCACCGTCACCGAAGACGGTGCCATCAAAGCCATTTACCACACCGGGCTGCATCGTACGGATGCCGAGATCGCGCGGCGAAACGCTGCCACGATGACCACCGCAGGCACTTCCGTCTGCTATACGGACGATCGACTCCGTCTGACTTTCAATCTCCTGCATCTGCACTGGGGCGGATTGCGCCTGTTGCGAGCGGTCGGCACACAGGGTATTGCCTCTCTGACCGATCTGGAGCGTTTCTCCCTTGTCTCAGCCGACTACTCCTATCTCTTCGGTCAGGGCGGAACCGAGCTGTTCGGCGAATTTGCCGGAGCCGCCAACGGTGCCGTGGGGACGATCAATGGGTTGCGCTATACGCACCCCGTCGGTGGCAGCTATATGCTCGTCGGTCGGTATATCCCTGCCGACTATTGGTCGTATTACCGGGGAGCTTTTGCCCGTTACAGCCGCCCGGGCAATGAGTGGGGCGTGATGGGGAGAGCCGCTTGGGAGCTGCCTTCGGACCGGACGGTCAGAGCTTTTGCGGACTACTACGGCAGTTTCGTTCCACGCTTCGGTCGAAAAGAGAAAACGGAAGCCTTGTACTGGATGTTTGAAGGAGAGAAGCGTCTGTCCGCTCTTTCATGGAGCTGCCGGATCCGAGGCACCGCCGACAAACGCTATCGGCGCAGCCTTGCCGTCAGGCTGAGAGGGCGATACATGTTCGACGAGCGGTGGCGGCTGATGGCTTCGTTGCAGTGGAGTCGGAGCAATAGCTTCGATAGAGAGCTGCAGACATGGCAGGCTCCGACGGGAGGCAAGAGCTTTGCTTTGCGTGCCGATTATAGCGGAGGGAAATTGCTCCGCGTATGCAGTATGGACGCCGTGGCATTCGATACGGATTCCTTTGCCGACCGGCTCTATGAAGCGGTGCACAATCCGCGTCACCACTATTCGTCAGCTTTTTTCTATGGCAGAGGAGTCCGTCTGGGCGTCTTCGTGCGTATTGCCCCCCTGCCCCAAGTGGAGGTCGAAAGCCGCATCGACCACCTTCTTCGGCGCGATACCGACACGATCGGATCCGCCGGCGAGCTGATCCGCGGACAGGCGCGTACACACCTGTTCATGACCGTACGCTACCGA","10.10","16.91","75786","MKPLLTVVCAIILLSLPLGGQTVVPEWDEYIAEQIESGALGEDEGAEFLERWMVQKQHPLDINTLTREDLEQFPFLNEFQIRRFLLYRHAHPEGFDSIWVLSEIAGWDRRTCLLLWPMLTVQKRSESAAASFREILSYARHDVSVHTDAILQQQEGYRPDSRHPYRGDPWGGGLRWSYAMGNRFSLGLTASKDRGEPAFDKRRKGFDSYSAHFFMEGKGAVRAVALGDYRIGMGYGLLVNQASFMGMAYAYPRGGTTLRRAFTYAEDNFMRGAATALAQGRWALTAFYSRQGIDATVTEDGAIKAIYHTGLHRTDAEIARRNAATMTTAGTSVCYTDDRLRLTFNLLHLHWGGLRLLRAVGTQGIASLTDLERFSLVSADYSYLFGQGGTELFGEFAGAANGAVGTINGLRYTHPVGGSYMLVGRYIPADYWSYYRGAFARYSRPGNEWGVMGRAAWELPSDRTVRAFADYYGSFVPRFGRKEKTEALYWMFEGEKRLSALSWSCRIRGTADKRYRRSLAVRLRGRYMFDERWRLMASLQWSRSNSFDRELQTWQAPTGGKSFALRADYSGGKLLRVCSMDAVAFDTDSFADRLYEAVHNPRHHYSSAFFYGRGVRLGVFVRIAPLPQVEVESRIDHLLRRDTDTIGSAGELIRGQARTHLFMTVRYR","2066785 2064782","TIGR ID: PG1977","hypothetical protein","Inner membrane, Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
noIPR
unintegrated
unintegrated
PTHR21180\"[28-131]TPTHR21180


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Feb 15 13:18:43 MST 2001","","Thu Feb 15 13:18:43 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541572","","","","","","1","","17","PG1977" "PG1727","2067430","2066819","612","ATGAAAAATCACACAAATGATCTTATGAAACGAACCCTTGTTTTCTTATTTCTTGCTGCCGTTTTGGCTCTTCGGGCCGAGGCACAGTCTGCACCCGAGCAATCCGAGACGAAGGATTTCATCTTCTCGCCCCAAAAGGAGATGGTGTACGTTGCCATCGGCTATCCGGCAGGAATCGGATTGCCCTCTCTGGATAATTATAACGTAGAAGGGGCTTCGGCTTCTTTTGCCGTCGGCTACGAACGGGGCGTAAAACAACTCGCAGAAGGGCTTCTGCTATCCATCTATGCGGAATTGGATTGGGCGGCATTCAGATCTGTATCTGACAAAAGATCCCTGCCTTTTTCTGATGATTCTGCGCAGAATCGGTTTCGATTTTTAGCCGGAGCAGGCGTGCACAAGCGGCTCAACCCGAATATCGAACTCTATGCAAGAGGTGCAGTAGGGGCGAGCTTTTTCCCGGAAAACAACGGTTCATCATCGAGAGAACTAAAGGGCGGATTTAACGTTAGCCTTAGGGTCGGACTGAGTTGCTCATTGAGAGACAATTTCGCCGTCTTTATCGATACCGGGACATCCGACATCGTGCGCGGCGGCCTTGCATTGATGTGG","7.50","0.43","22211","MKNHTNDLMKRTLVFLFLAAVLALRAEAQSAPEQSETKDFIFSPQKEMVYVAIGYPAGIGLPSLDNYNVEGASASFAVGYERGVKQLAEGLLLSIYAELDWAAFRSVSDKRSLPFSDDSAQNRFRFLAGAGVHKRLNPNIELYARGAVGASFFPENNGSSSRELKGGFNVSLRVGLSCSLRDNFAVFIDTGTSDIVRGGLALMW","2067429 2066818","TIGR ID: PG1978","hypothetical protein","Outer membrane, Extracellular","No significant hit found in gapped BLAST with E value less than e-04.","
noIPR
unintegrated
unintegrated
SSF56925\"[72-204]TSSF56925


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Feb 15 13:20:02 MST 2001","","Thu Feb 15 13:20:02 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541573","","","","","","1","","","PG1978" "PG1728","2067697","2067434","264","TTGGTTTATTCCGGTCGCAAAAATATGTGCAGCTTTTTTCATGGCAAAGAAAAAATCATCGAATGTTTTTATGGCTTCATAGATACAGACTATATCAATTCAGGCTTTCTTTTTCTCAGAAAGGATTCGCCCCAAAAAAGTTATCGATCGGAGCAGTATAAGCATGAAACCTCCGGCGAAAAAAGGAAAGAGGGGGAAAATCGCTCGATTGGCCGAGGGATTTGGCGGAAAAAGTGCCTGTTTCTCCGTATTTTTGTCCCGTTT","10.40","8.32","10527","LVYSGRKNMCSFFHGKEKIIECFYGFIDTDYINSGFLFLRKDSPQKSYRSEQYKHETSGEKRKEGENRSIGRGIWRKKCLFLRIFVPF","2067696 2067433","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No hit found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Feb 15 13:21:18 MST 2001","","Thu Feb 15 13:21:18 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG1728.1","2068075","2067707","369","TTGGAGAAGACTATCCACGCTCTGAAAAACGTGGCGCGGGAACTTTTTCGTTTTGGTTCGGGAAGTGAAAAATTCTCGCGCCACAGCGAAAAAATTCTCGCGCCGCTTTTCCCGAAAACACGCTCCGCAATCCGAGCATTTCCGGTCTGTGAACTTCGGAGAGGCGGATTTGTCCGAAAAGGAAAGTTCGGTCGTTTTCGGGGGAGGGGACAGGCTCGTATAAAAATATTATGGGCGACAATTGTAGAGAATTGCCGCCCTATATATCCAAAAATATACGGTCTGAGGAAATTATATCGTTATTTGAGTGCACTCACCTGCCTACCAATAGTTGTCATCCGTTGGGGGGCGTTTTATGAAAGAGTGATT","","","14311","LEKTIHALKNVARELFRFGSGSEKFSRHSEKILAPLFPKTRSAIRAFPVCELRRGGFVRKGKFGRFRGRGQARIKILWATIVENCRPIYPKIYGLRKLYRYLSALTCLPIVVIRWGAFYERVI","","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
noIPR
unintegrated
unintegrated
tmhmm\"[98-118]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Fri Mar 9 14:28:45 MST 2001","","Thu Feb 15 13:24:12 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","PG1728.1 is weakly similar to PG1702. Residues 11-49 show 74% similarity to PG1702, a hypothetical protein.","Tue Jun 5 13:02:52 MDT 2001","Fri Mar 9 14:28:45 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Jun 5 13:02:52 MDT 2001","","","","","","","1","","","" "PG1729","2069598","2069311","288","ATGAATGACAAAAAACTGCTGGTTGCGTACGACATATCCTCCAACAGGCGAAGACGTAAGGTTGCACGGATATTGGAGCAGTGTGGTATACGCATCAATAAGTCGGTATTCATCTGCAGCCTGCGAGAGCTGACAATGGACAAGTTGGTAGAGGCTGTTACCTCACAGACAGCTAAGAGAGACAAGGTGTTTTTTCTTCCTCTCTGTCAGCATTGTTACACCGCTGCTTGGATGAGCGGACATCCGACCCTCCCTAAGAGCCGGAGAAAAAGGAAAAGTATTGTGGTT","11.20","14.27","11134","MNDKKLLVAYDISSNRRRRKVARILEQCGIRINKSVFICSLRELTMDKLVEAVTSQTAKRDKVFFLPLCQHCYTAAWMSGHPTLPKSRRKRKSIVV","2069597 2069310","TIGR ID: PG1981","hypothetical protein","Cytoplasm, Periplasm","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR003799
Family
Protein of unknown function DUF196
TIGR01573\"[4-95]Tcas2


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Feb 15 13:25:22 MST 2001","","Thu Feb 15 13:25:22 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541576","","","","","","1","","","PG1981" "PG1730","2072713","2069621","3093","ATGCCACTCTCCACAGATTCGTTGCCGATCTTTTTATCGGACTTCACCGCCTACCATTTTAGCGTTCGTTTCAGAGCCGAACGTGCTATCGCTTTCGAACGCAAATGGTATTTCATGCCTCGGTTTGCATTGGGCAATGCCCTCAAAAATAGTGAGCAATACGCCTACCTCTATGGGCAGATATTCAAGCCACAAGAGGAAGACACGGACGAAAGCAAGGGACCGGGCAACACCTCGCGCCTGATCATTCGAGCCGACAAACCCTCTCGGAAGTCTCTGGAGGCAGGCGAAGCCATGGATCTGTATATTACCGTCGTAACGAGAGATCCTCTGCTGGTCGGAGACTTCCTCTCTTTCCTTCCGGAATGGCAAGCGTACAACTTCTTTCGGGAAAATGATCTCACATACGACTCCTACCGCTTGTACAATCCCACGACACAGAAATACGAGTCCGGGCTAAGGGTAGAGGATGCGGCACTTACGGTAGACTTCTTTTCTCGGCAAGCAATCCGTTGGGGTGAAATCCTCTCTGTACGCTTTCTGTCTCCGGCCAGTATCAAGGTAGATCAAATACTGTCCGCCGAAATACCCTACTCGCGTCTCATGAATAGACTCTCACGGCGTCTGTATGAGCTATATACGCAATACCTGAGCAGGGGAGAGACATCTGTGGAGCGATATATTTTCCCCGACCATGATGGGCTGATTTACTCCCAGATAAGTATGCCACGCAAGGCGACTATCAAGGAAAACAGACAGTACGACATGTCCGGCATATTGGGTCAGCTCTTCTATCGTGTTCCCTACGATCCCGTAGCAGCCCTTATGCTCTCAATGGCGCATTGGGTGCATATAGGCAATCATACAATCGTGGGGAATGGTCAGATAGAGAGCACTCCGGGCAACGATACCTTGTATCGCAAGTGGCTCTCTTCGCTGGCTGCGGATCGTGACCTTCCCATGGCAGAAGCGGAGCGACAAGATTTGTTGGAAGCCCTACGTATTTGCAGCTATATACCGCAGCCCTATCACTCTGTGAACATACCCAAGGGGGATGGCTCTTACCGACAGCTACATATCCCTTCGGCAGTGGATCTCCACTTGCAGAGAAGCCTTGCCGGCATACTCTATCCGATCACCGAGTCTTTATCCATTGCACAGAGCTATGCCTATCGCAAGGGGAAGGGAGCTGTGGCTGCCGTTCGTAGAGTGCAGCATCTGCTGGATTCTCTGGATGAGAACCATACAGTGGTGCGCTGCGATATTGACAACTTCTTCGATTCTATCCCTGTCCCCTCTCTATTGCAGAAAGTCCAAAGAACAACCGAAGATCCCTTCCTTACCCGTATGTTGAGCCTCTGGATGAAGTCCGGAGTCGTGGACCGGAAGCAGCAATATGCTCGTGCATCCTCCGGCATCCCACAGGGAAGCCCTCTGGCCCCTCTGCTTTCCAACCTCTACTTGGAAGACACGGATCGCTACATCGCCGGGCATATAACAACCGAATTTATCCGCTATGCCGACGACCTGCTACTCTTCTTGCCGGAGAAAGTAGATCCGCTAAATGCTCTCCAAGACCTGAGCGAACATTTGAAATACCGCAAAGGGCTGAAGCTGAATAGGGACTTTGTGGTATCGAGCATAAAAAGCTCTTTCAGTTTCCTCGGTATTACGTTCTGTGCAGATGGTTCAAGGAGCATGAGCCGGGACAAGAAAGAGGGACTCAAACGCAAGATCACACTCGCGCTCCATCGCGACACCGAAAACTTCTCAGCTCTCTCGGAGACAATCCATGGCATGGAGCAGTACTACCGCAAACTGCTCGAAAAGGTGGACATAGAGGCTATTGACGAAGTTGCCGCCACTGTCTATGCCACTCACATCGCATCATTACCGACCTCCGAGGCTCGGAAAAGCGCCAAGGACAATCTTCTACGGCTGGGCTTTCTCTCTTCGGAAACGGCCAAACAGACTCTTCGAGAGGCTATGCGGCAGACAGTGGTCTCAAGTGCAGACAATTTCCCGATAAAGAAAGAGAGCGAAATCCTGCGTGAGCAGCAAAAAAGACAATTGCAAGAGAGGGGAGAGATATTCGATTTGGTAGTTACCGAGCCAGGAGCTTTCATCGGTATCAGTCGCAACCATGTGCTCGTAAGGAAGTACGGGAAGACAATCTGCAAACAACCTGCTGCACAGATAGAGCAGATCAGCATCATCAGTGACGGTGTCTCTCTCAGCAGTAATGTCACCAAATACTGTAGGAAGAAGAATATCAGAGTCATATTCTACAATGCAACGGGCCAGGCCTATGCCTCTCTCAACGGCATGAATACCATCTTGCCTTCCGTGATGGAGGCCCAGATGCGCCTGAGCGAAGAAAAAAAGCGAGAGTTCATCCTTACTCTTATCAAGAACAAGGTTCGCAATCAGGGCAAACTCCTGCGCTACTACCATAAGTATTATCGCCATGACAAAGAGCTGAAAGAGCCTCTCTCCAACGCTATCGCCGAGCTAAAGCAGCTGGAAGGTATACCCATAGCGGAGGGCAGCTCCCTTGCGGACTTCCGACAGCATGCCATGCTTCATGAAGCCCGCTGCGCACAAGTCTATTGGAGGGCATTTGCCCTGCTGGTGCATCGCTCCGGGCATGAATTTGAAGGGAGAGAGCATAAGGGAGCCGAGGGATTGGTCAATCAGATGCTAAACTATGGCTACGCTATCCTCCGGAGCTATGTGATGAAGACAATAGTCCTTTGGCAGCTCAACCCGAATATCGGTATCCTGCACAGCACGCAAGACAATAAACCGGCCCTGTGTTTCGATCTCATGGAGCAATACCGGGCCTTTGTCGTCGATAGGAGCATCCTGGCCCTACTGGCCAAGGGGGAAGATGTGGGGCAGAATAGCAAAGGGCTGTTGGATATGCCTACACGCAGTCGCATTATATCGAAGATAAACGAACGCTGGTTTGCTACCGAATACTATCGATCCGGGGAAAAGCTTTTCTCCGATATTATGAAGTTGCAAACCAAAGATGTGAGTGCTTTTTGCTGTGGCAAGGTGAAGCGCATCAAATTCTATACCCCTAAATGG","9.80","23.45","118116","MPLSTDSLPIFLSDFTAYHFSVRFRAERAIAFERKWYFMPRFALGNALKNSEQYAYLYGQIFKPQEEDTDESKGPGNTSRLIIRADKPSRKSLEAGEAMDLYITVVTRDPLLVGDFLSFLPEWQAYNFFRENDLTYDSYRLYNPTTQKYESGLRVEDAALTVDFFSRQAIRWGEILSVRFLSPASIKVDQILSAEIPYSRLMNRLSRRLYELYTQYLSRGETSVERYIFPDHDGLIYSQISMPRKATIKENRQYDMSGILGQLFYRVPYDPVAALMLSMAHWVHIGNHTIVGNGQIESTPGNDTLYRKWLSSLAADRDLPMAEAERQDLLEALRICSYIPQPYHSVNIPKGDGSYRQLHIPSAVDLHLQRSLAGILYPITESLSIAQSYAYRKGKGAVAAVRRVQHLLDSLDENHTVVRCDIDNFFDSIPVPSLLQKVQRTTEDPFLTRMLSLWMKSGVVDRKQQYARASSGIPQGSPLAPLLSNLYLEDTDRYIAGHITTEFIRYADDLLLFLPEKVDPLNALQDLSEHLKYRKGLKLNRDFVVSSIKSSFSFLGITFCADGSRSMSRDKKEGLKRKITLALHRDTENFSALSETIHGMEQYYRKLLEKVDIEAIDEVAATVYATHIASLPTSEARKSAKDNLLRLGFLSSETAKQTLREAMRQTVVSSADNFPIKKESEILREQQKRQLQERGEIFDLVVTEPGAFIGISRNHVLVRKYGKTICKQPAAQIEQISIISDGVSLSSNVTKYCRKKNIRVIFYNATGQAYASLNGMNTILPSVMEAQMRLSEEKKREFILTLIKNKVRNQGKLLRYYHKYYRHDKELKEPLSNAIAELKQLEGIPIAEGSSLADFRQHAMLHEARCAQVYWRAFALLVHRSGHEFEGREHKGAEGLVNQMLNYGYAILRSYVMKTIVLWQLNPNIGILHSTQDNKPALCFDLMEQYRAFVVDRSILALLAKGEDVGQNSKGLLDMPTRSRIISKINERWFATEYYRSGEKLFSDIMKLQTKDVSAFCCGKVKRIKFYTPKW","2072712 2069620","TIGR ID: PG1982","transposase 11","Outer membrane, Cytoplasm","Residues 326-577 show 26% similarity to AP001507, B. halodurans transposase 11. Residues 331-618 show 28% similarity to AF030367, S. pneumoniae maturase-related protein.","
InterPro
IPR000123
Domain
RNA-directed DNA polymerase (Reverse transcriptase), msDNA
PR00866\"[343-356]T\"[413-431]T\"[472-485]TRNADNAPOLMS
InterPro
IPR000477
Domain
RNA-directed DNA polymerase (Reverse transcriptase)
PF00078\"[339-559]TRVT_1
PS50878\"[329-559]TRT_POL
InterPro
IPR002729
Family
Protein of unknown function DUF48
PD008695\"[921-1024]TDUF48
PF01867\"[698-1021]TDUF48
TIGR00287\"[699-1025]Tcas1
noIPR
unintegrated
unintegrated
SSF56672\"[295-559]TSSF56672


","BeTs to 7 clades of COG1518COG name: Uncharacterized ACRFunctional Class: SThe phylogenetic pattern of COG1518 is AmtK-qv---r----------Number of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","Residues 716-1020 are 27% similar to a (PROTEIN CONSERVED LONG 322AA) protein domain (PD008695) which is seen in O28401_ARCFU.Residues 348-518 are 26% similar to a (PUTATIVE REVERSE TRANSCRIPTASE) protein domain (PD138818) which is seen in O21164_FUSOX.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Feb 15 13:39:29 MST 2001","Tue Jun 5 13:05:34 MDT 2001","Thu Feb 15 13:39:29 MST 2001","","Thu Feb 15 13:39:29 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1730 is weakly similar to PG1758, a conserved hypothetical protein. Residues 746-961 show 23% similarity to PG1758.","Tue Jun 5 13:05:34 MDT 2001","Tue Jun 5 13:05:34 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 339 to 559 (E-value = 2.3e-33) place PG1730 in the RVT family which is described as Reverse transcriptase (RNA-dependent DNA polymerase) (PF00078)Residues 698 to 1021 (E-value = 6.3e-10) place PG1730 in the DUF48 family which is described as Protein of unknown function DUF48 (PF01867)","Tue Jun 5 13:05:34 MDT 2001","34541577","","","","","","1","","","PG1982" "PG1731","2073535","2072777","759","ATGAATTTCGGATACTGGTACTATCGAGAGTATTTCAATACGATAAAACTCAATAGTGAGGGCATTGTAACCAACTTCTCCACGTTCAATAAAGGGAAGAACGATAAACTAATAAAGGGAGCTACTCTCCCTCCCTGCGACAAGGAAAATGATATTAAGGATGTAACTGGCTTCGAGCTAAAGACCTGCTATCCGGGGTTGCTCTGTGGTGTGGGCTATCACCACGAGATAAACAAACCTGCGGATGAAAAGGGTAAGAAGGTTGAGGGGGATAAGGAAGATGATGCACCAGAGGTTTACAACCTTGGGATGTACTTCGACTATACATCGGGTTTGCCTGTTATCCCCGGCTCTTCTATCAAAGGGATGCTACGCTCTGCCATCGAAGAGTGGGACTTCCTTGCAGATTATGAGCTCAACAATGGAGTTACACGTGAAGAAATTATTGAGAAAGTATTTGTAGGAAAAGAATATTCCATTTATGACAGAGACATTTTCCTCGATGCCATTCCTATAAGAGTAGATAACACTCTCTTTGGAGAGGACTATATCACGCACCATCCTAATCCTCTGCAAAACCCTAATCCTGTACGTTTTTTGAGGGTTGAACCAGGTGTAACCTATCAGTTTCGCTTTATCCTGAAAGATCATGGAGAGAAACTAACGGTAGACTTTAGGACAAAGCTCTTCAAAGCTATTATCTGCACTTTTGGTCTCGGGGCCAAGACCAATGTCGGCTACGGGCAATTTGTAGAACCT","5.20","-6.97","28918","MNFGYWYYREYFNTIKLNSEGIVTNFSTFNKGKNDKLIKGATLPPCDKENDIKDVTGFELKTCYPGLLCGVGYHHEINKPADEKGKKVEGDKEDDAPEVYNLGMYFDYTSGLPVIPGSSIKGMLRSAIEEWDFLADYELNNGVTREEIIEKVFVGKEYSIYDRDIFLDAIPIRVDNTLFGEDYITHHPNPLQNPNPVRFLRVEPGVTYQFRFILKDHGEKLTVDFRTKLFKAIICTFGLGAKTNVGYGQFVEP","2073534 2072776","TIGR ID: PG1983","conserved hypothetical protein","Cytoplasm","Residues 97-253 show 30% similarity AE001817, T. maritima conserved hypothetical protein.","
InterPro
IPR005537
Family
Protein of unknown function DUF324
PF03787\"[58-251]TRAMPs
InterPro
IPR010172
Family
CRISPR-associated protein, TM1791
TIGR01898\"[58-251]Tcas_TM1791_cmr6


","BeTs to 3 clades of COG1604COG name: Uncharacterized ACRFunctional Class: SThe phylogenetic pattern of COG1604 is a----qv--------------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Feb 15 13:43:09 MST 2001","Thu Feb 15 13:43:09 MST 2001","Thu Feb 15 13:43:09 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","Residues 58 to 253 (E-value = 1.4e-07) place PG1731 in the DUF324 family which is described as Protein of unknown function (DUF324) (PF03787)","","34541578","","","","","","1","","","PG1983" "PG1732","2073975","2073535","441","ATGAATAAGAAGACCATACAAGATTTGATCCCCAAGGCTATGCAAGCCATCGAGGGAGTAGGTATTGTGGGCAAGGATAAGAAGTTCGAGAAAGTCCACGAGGGATATATCAATGCTCTTGGTCCTACTATCATTCAGTCGGGACTTCTCCCTACGCTCATATTCTACAACAAGGATAAGCGAGAGCTATGGCTTAAGGCACTATACTATATGGAAATCATAAGCAACGATATAGACCCCACGGCCATTATCCAACTTATCATAAAAGAGGGGGATAGTGAAAGTAGGCAAGAGAAAACTCTAAAAGAGTTAGAGCCCAAAGCCAAGGAGTGGGAGCGCAAAATACTTGAGTATGCGGTGGCTCTCAAGCTGGCGCTTAGGACTTTTGTTGCCAAAGAGTCTGAAACAGGCAATACAGAACAACAAAAAGGAGGTGCACAA","8.90","1.24","16660","MNKKTIQDLIPKAMQAIEGVGIVGKDKKFEKVHEGYINALGPTIIQSGLLPTLIFYNKDKRELWLKALYYMEIISNDIDPTAIIQLIIKEGDSESRQEKTLKELEPKAKEWERKILEYAVALKLALRTFVAKESETGNTEQQKGGAQ","2073974 2073534","TIGR ID: PG1984","hypothetical protein","Cytoplasm","No hit found in gapped BLAST.","
InterPro
IPR010160
Family
CRISPR-associated protein, TM1791.1
TIGR01881\"[2-134]Tcas_Cmr5


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Feb 15 13:45:06 MST 2001","","Thu Feb 15 13:45:06 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541579","","","","","","1","","","PG1984" "PG1733","2074673","2073975","699","ATGAAAACAGCAGCTTATATGATCCATTGCCTTACCAATATGCATGTGGGTAAGGGAGATGCCACCTACGAAGTGGTGGACAAATGTGTACAGCGAGATGTAACCACAGGGATGCCCTGCATCTACTCCTCCAGCCTCAAAGGAGCTTTGAGACAGTTCTTTTCGAAACAAGGCTTTGCCGAGCTTAACTATGTTTTTGGGAAAGATCAGAGCAGGGATAAGAAAAATAATGGCAATGAGAAGAATGAAGAAGAGCATAGCGTTGGCAACTTCACCTTCTTCCAAGCCAACCTATTAGCCTATCCTGTTCAGACAACTCAAGAGGGTGCCACTTACATCCTCAAAACAAATAAAACCCTGCAAGATCCTATAAAGGAGTTAGCAAACCTTTTTTCTGCTCCATCGAATATTGAAGAGATGTTACCTAAGGAGACTGAAAAGGATTTATCCAATGAGACCCTCGAGCAACTCCCGGTCATAGCCCGCAATCAATTGGACAATGGGAAGAGTGAGAATCTATGGTACGAAGAGGTCGTACCTGCCGAGAGCCGTTTTGTCTTCTTCGTATCCTACGATGATGAAGAGATCTTTACGAAGTTCGACAAAATAATCCAAGAGAAAGTCATCCAAATAGGTGCCAATGGCTCTATCGGTTATGGTTTTTGCAAGATTGCTAATGTTACAAATCCCTTCAAAAAA","5.10","-5.45","26375","MKTAAYMIHCLTNMHVGKGDATYEVVDKCVQRDVTTGMPCIYSSSLKGALRQFFSKQGFAELNYVFGKDQSRDKKNNGNEKNEEEHSVGNFTFFQANLLAYPVQTTQEGATYILKTNKTLQDPIKELANLFSAPSNIEEMLPKETEKDLSNETLEQLPVIARNQLDNGKSENLWYEEVVPAESRFVFFVSYDDEEIFTKFDKIIQEKVIQIGANGSIGYGFCKIANVTNPFKK","2074672 2073974 [Delay by 162 2246 146 0]","TIGR ID: PG1985","hypothetical protein","Cytoplasm","No significant hits found using gapped BLAST search of GenBank.","
InterPro
IPR005537
Family
Protein of unknown function DUF324
PF03787\"[6-223]TRAMPs
InterPro
IPR013410
Family
CRISPR-associated RAMP Cmr4
TIGR02580\"[4-223]Tcas_RAMP_Cmr4


","BeTs to 4 clades of COG1336COG name: Uncharacterized ACRFunctional Class: SThe phylogenetic pattern of COG1336 is a-t--Qv--------------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Feb 15 13:50:25 MST 2001","Thu Feb 15 13:50:25 MST 2001","Thu Feb 15 13:50:25 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","Residues 6 to 225 (E-value = 1.4e-23) place PG1733 in the DUF324 family which is described as Protein of unknown function (DUF324) (PF03787)","","34541580","","","","","","1","","","PG1985" "PG1734","2075877","2074690","1188","ATGTCTACCTATCTTATTAAGCTTACGCCTTTGGATAAGTTTTTCTTTGGGCAGAAGAAAACCTTTGGCGATGACAATGCCAACTACTTCGTGTACTCCTCCCTCTTCCCACAGCAAACTACCTTGTTGGGGCTTTTGCGCTATCAACTGTTGCAAATAGCAGGAGAGGAAATCTTCAAGGATAATAAAATCCAAGATGAACATAAAGCTGGTGAATTGATTGGCAAACAGAGTTTCTCTCCATTTGTCAAGGATAAGTTGCAGTTTGGTATTATCCAATCGCTCTCTCCTGTCTTTATCATAGACAAGAAGAAGAACGATGAGGGTAAGGAAGAGTACTTCCTACCTGTGGGTAGACGGTTTCAAAAGGAGAATGAAAAAGCTCCGTACAATCTCTTACACCTCTCCTGTCAAGCTGGATGCCCTCCTATCTTCGGCGAATACAAACCCAAGAAAGGGCTGGCGTCTTGCTGGCTATCTTCCAAAAGCCATACGCTCCTTAACGAAGAGGACTTCTTCACAAAAGATGAGCGCATCGGGATACGCAAAGATTATGAAGGAGCAACGAACGATGATGCTTTCTTCTGTCAGAGATACTATCGCTTCAAAAATTTCAAAGAGGTAGAGGGCGAAAAGACCAAGGTGTGCAAGCAACCACCCGTACGAGAGCACGACTTCTGCTTTGCGGTGCTTTTGGAGACCCACAGGGATATAAAACACGAAGAGTTGAATAAGAGAATCGTCTACCTCGGTGGAGAACGACAACCTTTTCTTATGGATCTTATGGAGGTAAGTGAAGAGACCTTCAAACTCAACATTGAGAGTTCTACTCTTACGAGCGATGAGAAGCACTACACCGTGGTACTTCTATCCGATGCTATGATTGAACCTAAGCTCCTTGAGGGGGTAAAATTTGCAAGCACGGAGGTGAAAGACTTTGCCTGTTTGCTCACTCATGTAGGAACACGCAGGTTCTACAACAAGAAGAAGAAAAGAGAGGAACAGAACATCGAAGAAGTTGAAACGGCTCTAAGTCACCAACATGAACTATACGCCAGAGGTTCCGTGTTTTACTTCGATACTAAAGAGCAAGCAAATCAATTCTGTGAGGACCTCGAGAAGGTCCCCAACTTCCATACCATCGGCTACAATCATGCTATCATCATCGAACCAACAAAAACAAAAAAA","6.90","-0.45","46147","MSTYLIKLTPLDKFFFGQKKTFGDDNANYFVYSSLFPQQTTLLGLLRYQLLQIAGEEIFKDNKIQDEHKAGELIGKQSFSPFVKDKLQFGIIQSLSPVFIIDKKKNDEGKEEYFLPVGRRFQKENEKAPYNLLHLSCQAGCPPIFGEYKPKKGLASCWLSSKSHTLLNEEDFFTKDERIGIRKDYEGATNDDAFFCQRYYRFKNFKEVEGEKTKVCKQPPVREHDFCFAVLLETHRDIKHEELNKRIVYLGGERQPFLMDLMEVSEETFKLNIESSTLTSDEKHYTVVLLSDAMIEPKLLEGVKFASTEVKDFACLLTHVGTRRFYNKKKKREEQNIEEVETALSHQHELYARGSVFYFDTKEQANQFCEDLEKVPNFHTIGYNHAIIIEPTKTKK","2075876 2074689","TIGR ID: PG1986","possible CRISPR-associated protein, TM1793 family","Cytoplasm","This sequence corresponds to gi:34397898 in Genbank.","
InterPro
IPR010165
Family
CRISPR-associated protein, TM1793
TIGR01888\"[6-391]Tcas_cmr3


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Mar 9 10:27:02 2005","Wed Mar 9 10:27:02 2005","Thu Feb 15 13:51:44 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 9 10:27:02 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541581","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","Jansen R, Embden JD, Gaastra W, Schouls LM.Identification of genes that are associated with DNA repeats in prokaryotes.Mol Microbiol. 2002 Mar;43(6):1565-75.PMID: 11952905","Wed Mar 9 10:50:22 2005","Wed Mar 9 10:50:22 2005","1","","","PG1986" "PG1735","2077525","2075882","1644","ATGAGTAATGAGATATACACAGCAATAACCATTGGGCCGATATGTAAAACCTTAGACAAGGCTCGAAGCGTGAAGTCCTTTTGGACGGCGAGCTACCTCTTCTCTTGGATAATGCGGGAATTGCTCGAAAGACTACCCAAAGAAGAGCGACCGGAAGGAAGCTTTGAGGTTCTCTCTCCACATCGAGATGGCAAAGATGTTCCAGAAGAAACTTCTAAAAAGGTGGGCTTATTCCCTGATAGACTTTTTGCCAAAGGAGAGCTTGAAGAGGAGAAACTCCAAGAGATAAAAGGGAAAATCTTCATCGAACTTGCTGAGAAATTCAAAAATGCTTTTCAGGATGAAAAAGATGGTATTACCCGAAAGATAGATACGGAAAGTGACCCAAAGCGGAAGAGAGAGCTTGAAGAAATACAAAGTCGGTATAGCAATGCTGCTTTGAAGGGTGAGGATATTCGCAAGTACTTAGAGAATTACCTCTCTATCTCCTGCATAACGGTAGAGCTTAGCTCCGATTGTAACATCTTGGAGCAACTCAATAGCTACTTAGACACACAGGAGTTGTTCAACAAAGCCTCCATACAGACCGACGAGGATTATATGGAGCTCTTTATCGAGGCTCCCAATAATCCTTTCTTAAAGGCCTATTCCCAAGATAGAGCTTTCCCAAGCACTTCGGAGATAGCTGTATCGGGATGGGAACAAGATCCTCCCAAAGATGAAAACGGAGAGGTAGAGTACACCCAATTGACCTCAAAGCCTGGTTTTCGTAATTGTTACAAGTATTTGGCAGTCATAAAGGCGGACGGAGATGGCTTTGGGACATACATCAAAGAACTCAAAGTAGACGAGGAAAAGGAAATAAAAGAAAACGGAGAAAAGGAAAACGAGCTAAGCAGATTTACGAAATCATTCTTCGAGTTCTCTGTTGAGGTAGCCAATGAGTTAATACAGAAAACAAAGGCTATACCTGTCTATATCGGAGGGGATGATCTCTTTCTCTTTGCTCCTGTATTGGAGGGCAATGTCGAAAAGGATGTATTCAACCTTATTAAGGAGATAGATGACCTATTTATCCAAAAGGAAATAGGCGAAGGTCTTTCGATGTCTTACGGCGTAAGTATCTTTTACTACAAGAGTCCCATGTCTGAGGCAATAGACATAGCCGATAGTATGTTGAGGAAAGCAAAGGAAGAGAAAGAGGAAAAGGAAAAGAAGAAAGATACCGTAGCTATATCCATACAGAAACACAGTGGGCAGAAGATAGAGTTCCTACTGCCGTGTAAGCATAGTACCGATAAGTGTAAACAAGAAACAGGCCTATACAAAAAGGCAACCGAGCTTATACGAGCTTTTAAGGAAGATGACAGTATGCTCAACAGTCTTATCTATTGGATAGAAGATATGTATGAGACAATTTTCACCGACGAGGTTACCCTATACCAAGAGCGTATCAATGCGGTCTTTGACAACTTTTTCGACGAAGAGATTCACAAGGAGAACGAAGTGTTTTTCGACCTCCTGAAGAAGTTTATCCACTCCATGCATCACTCCGAAGATACCCCCCGCAAGTTGAAAGACAAAAAGAAACTACTGCACGGCATCTTGCGCTACTGCCAATTTGTAACGGCTAAAAAAGAGAAA","4.90","-23.30","63662","MSNEIYTAITIGPICKTLDKARSVKSFWTASYLFSWIMRELLERLPKEERPEGSFEVLSPHRDGKDVPEETSKKVGLFPDRLFAKGELEEEKLQEIKGKIFIELAEKFKNAFQDEKDGITRKIDTESDPKRKRELEEIQSRYSNAALKGEDIRKYLENYLSISCITVELSSDCNILEQLNSYLDTQELFNKASIQTDEDYMELFIEAPNNPFLKAYSQDRAFPSTSEIAVSGWEQDPPKDENGEVEYTQLTSKPGFRNCYKYLAVIKADGDGFGTYIKELKVDEEKEIKENGEKENELSRFTKSFFEFSVEVANELIQKTKAIPVYIGGDDLFLFAPVLEGNVEKDVFNLIKEIDDLFIQKEIGEGLSMSYGVSIFYYKSPMSEAIDIADSMLRKAKEEKEEKEKKKDTVAISIQKHSGQKIEFLLPCKHSTDKCKQETGLYKKATELIRAFKEDDSMLNSLIYWIEDMYETIFTDEVTLYQERINAVFDNFFDEEIHKENEVFFDLLKKFIHSMHHSEDTPRKLKDKKKLLHGILRYCQFVTAKKEK","2077524 2075881","TIGR ID: PG1987","possible CRISPR-associated protein, TM1793 family","Cytoplasm","This sequence corresponds to gi:34397899 in Genbank.","
InterPro
IPR000160
Domain
GGDEF
PF00990\"[367-403]TGGDEF
PS50887\"[261-415]TGGDEF
InterPro
IPR013407
Family
CRISPR-associated protein Crm2
TIGR02577\"[5-398]Tcas_TM1794_Crm2


","BeTs to 3 clades of COG1353COG name: Uncharacterized ACR, HD hydrolase domain with permuted motifsFunctional Class: SThe phylogenetic pattern of COG1353 is amtk-qV---r----------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Mar 9 10:35:07 2005","Wed Mar 9 10:35:07 2005","Thu Feb 15 13:53:06 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 9 10:35:07 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541582","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","Jansen R, Embden JD, Gaastra W, Schouls LM.Identification of genes that are associated with DNA repeats in prokaryotes.Mol Microbiol. 2002 Mar;43(6):1565-75.PMID: 11952905","Wed Mar 9 10:35:42 2005","Wed Mar 9 10:35:42 2005","1","","","PG1987" "PG1736","2078960","2077521","1440","TTGGAATTTGAATTGGAACAGCATACGCCCATCATCCACTTCCAGGCCAGGGATGCAGGGGCAACGCTGCGCGCCTCCGAGGTCAAACCGAAGCTCGACAAGTTTATCTTGACACAGATAGGCAAGAGGTTTGTAAAGAAAACTGCTTCGACAACAGAAAAAAACTTTATCGAAAGGGGGATAGAATACTTTCAAAATAAAGATGAAGAGGCTCGCAGAGTGTATGAGGAAGAGAAAAAGAAAGGGAATAAGGGTGCAAAATTGGAGCTTTGTCTCATCCCCGGACAAGAAGGAGCCTTGAACTACAAACTCTCTTTTAAGCTAAGCCCTGATGCGAAAGTGCAGTATTTCTTGCCAATGAGTAGTAACCCGAAAGAAATAGATAAATTAAAAAGCCTCGCACAAGAGAAGTTAGGAGTGCAAGAGGTTGAGATGCTACCCTTGACTTCTTACTTTGCTAATGAGGACAAGGCTAAATCAGAACCTAATATAAAGCATGGTGACACTCCAGACCAAATAAAAAATAAAAAAAGAATATTTGAAGAAAACTGGCAGAAGGTACAATTAGCAACATTTGTCAATACTCCAGTTGAAGGGGTAATACGCTTTCAGAATGCTGGACTAAGAGAAGAGGTGAACAATCTCATCACCAACTTTTTTATGCTCCATAACTTTGGTGCGAGACAATCCAAGGGGTTTGGCTCTTTTATCATATCCCTGAGAGATGGAAAAGAAGAGGAGGATTATTTTGATACAGGCTGTGCTTGTTATGGATATTCTTTTTATATACCTGCGAAAACACTAGAAGAAGCACTTAGAAAGATCAACTATTTCTATAGGAGCCTAAGAAGCGGTTTTAATGAATACAGGGGTAAGAATGAGATTTTTTACGCTAAATCTGGAATGCATTTCTATGCCACAAAGCATAATTTTGAATGGGATAAGAAAAGTATTAAAGGAATGCTTTTCGATCGAGATAAAGATTTAGAGGGAAAAATGAAAAAAGAGGAACTTTTTGCTTTTAGAGATTTATTGGGTTTATCTTCAAACGAACGCTGGCAGAGCTACAAGACAACCATTACCAAGGAATGTAGAAATAAAAAAGGGGAGAAATTCGATCGAATTAAATCTCCCATACAATTCAAGCCGATATGTTACAGCAAATATGATTACATCGTATTTTTTGATCTCTTTCCCGAAAAAAGTGGAATACCTCAATTAAAAGGAGGCAAGGTTGTAGTAAAATCATCAAGGCATAAAGGGGCTGTCTTAGAGTTAAAGATTCAAGAAGATATTGATCTATACAATGTTTTTAATGAAATATTCTCAGAGTTAAATTTTGAATCTCAAGTAGGTGAATATGATTCATTAACGGATGCAAAGGAGATTTTCGAGACCATGAAAGACATTTACGAGCAATTAAATAAGAATTGTCATGAG","8.80","7.70","55956","LEFELEQHTPIIHFQARDAGATLRASEVKPKLDKFILTQIGKRFVKKTASTTEKNFIERGIEYFQNKDEEARRVYEEEKKKGNKGAKLELCLIPGQEGALNYKLSFKLSPDAKVQYFLPMSSNPKEIDKLKSLAQEKLGVQEVEMLPLTSYFANEDKAKSEPNIKHGDTPDQIKNKKRIFEENWQKVQLATFVNTPVEGVIRFQNAGLREEVNNLITNFFMLHNFGARQSKGFGSFIISLRDGKEEEDYFDTGCACYGYSFYIPAKTLEEALRKINYFYRSLRSGFNEYRGKNEIFYAKSGMHFYATKHNFEWDKKSIKGMLFDRDKDLEGKMKKEELFAFRDLLGLSSNERWQSYKTTITKECRNKKGEKFDRIKSPIQFKPICYSKYDYIVFFDLFPEKSGIPQLKGGKVVVKSSRHKGAVLELKIQEDIDLYNVFNEIFSELNFESQVGEYDSLTDAKEIFETMKDIYEQLNKNCHE","2078968 2077520","TIGR ID: PG1988","hypothetical protein","Cytoplasm","This sequence corresponds to gi:34397900 in Genbank.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 12:29:19 MDT 2001","","Thu Jun 14 12:29:19 MDT 2001","Thu Jun 14 12:29:19 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:29:19 MDT 2001","Thu Jun 14 12:29:19 MDT 2001","","","Fri Mar 9 14:22:24 MST 2001","Wed Mar 9 11:09:18 2005","Thu Feb 15 13:54:32 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Mar 9 14:22:24 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jun 25 15:17:00 MDT 2001","34541583","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Wed Mar 9 11:09:18 2005","","1","","","PG1988" "PG1737","2079194","2078979","216","GTGGTAGTAGCCACTGCCACAATTATTGTCGTAGCCATTATATGGAGCTACAAATTAAAAATCAAAAAGGAGGAATTACGAGACAAAACATTGTTCGAATTAGAACGAGAAAGAACAAAGGATTTGAATAAATGGCAGAGCTTCTCCGAATCGTTGCTTGAGACCAATAAGGGACTCATGGAAGTCTATTGTAAGGACAATACAAAACAAAAAGCA","9.80","2.94","8446","VVVATATIIVVAIIWSYKLKIKKEELRDKTLFELERERTKDLNKWQSFSESLLETNKGLMEVYCKDNTKQKA","2079226 2078978","TIGR ID: PG1989","hypothetical protein","Cytoplasm, Periplasm","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-16]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 12:29:49 MDT 2001","","Thu Jun 14 12:29:49 MDT 2001","Thu Jun 14 12:29:49 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:29:49 MDT 2001","Thu Jun 14 12:29:49 MDT 2001","","","Thu Feb 15 13:55:37 MST 2001","","Thu Feb 15 13:55:37 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Jun 14 12:29:49 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jun 25 15:15:09 MDT 2001","34541584","","","","","","1","","","PG1989" "PG1738","2080812","2079232","1581","ATGGAAGCTGAAACTTACAGTAGGCATATCTTTATTTTTCCTTTTCAGTGGGATTACATCGAAAAGAGAGGGTATGCTTCATATAACGAGAGGACAGATATAAAGAAGTTTGATAAACTGTTTTCGGCAGTCAGTCCTCTCAAAAGGCAATACTTCGAGATAGGAGCTTCGGAAGAACGCTACAATGAATACACCTATTTTCATCCTTTTGCCCGAAGAGCCCTCTTCGGAACGAAAGAAAACCCTTCGGTCTACCACTATGAATTGAGCGACACCCAAGGCTCTTACAACATCTCTGTGAAAATTGATGGAGTCTCTACGACCTACTCTCTACAACTTGAGAAGATAGCCGTATCTGTATTCGATACGGGTGTGGGAACGGTAGCCTACTTTCTCCGCAACGATAAGCACACCTCTTTCGAAGACATACTCCGCATCAATGACTCGGGCAGACGCATCTACCCTCAATATATGGCGAAAGGAGACAGATTAGCCGCCAAAAATTCTTTTCTTGCCGACCGTATCTATGGGAGTTTAGGAGTGCTGGATTTTGACGACGACTTCCGTCAATTCGAAGAGGATATTAGTCATACGAATATCTTTCTCCCCCCCGACCATATCCGTCAGGTGTTCGGTTACAACAAGATGGATCGAACGGAAGACGATGGGTGCCAAAAGTTCGTGTTTCATCAAGAGAGCGAACGGAAAGACATCATCCGCATCTCCCCCGTTATGGATGATAGGATGTTCTTTATAACCTACTACCATAGCCCCTATTATGCCAAAAAGTTGAGAAGCAAACCGAAAAACTTTAGGAGAAAGAGAGAATACAACATCTACGAAGAGGGACGCTTTGGAGACCTTTGGTTTCGATATATTTTCGGAGATAGGGGAGATAAGACTGTGGCTAATACGTCTGTACAAAGGGAGGATGTCAGGAGAACAACCTATGCAAGATGGTCGGGAGAAGGTACTCTCTTTGGTCTAACCAAAGACTCTCTCGTAGGTATTTCAGGTTGGGAACTTATGGGAGACCATATTACAACTATGTACTACCAAATGGCAACATTGAGCCTTGTGCAACGCTCCACCATACTACGCTTCAGCAACGAAATAGCCTCTATCACACAACTGATATTGGACAAGAAGACAAAGAGAAAAACCGAAAAGCAGGTCAAAGAGCTGTACGGCAACTATATCCGCTTTCTTAATGAGACCTACTTTCGAGAGGTTACCCCTCAAATACAGGGCATAGAAATGTACGATATGCTTCAAAGCAATATGAACATCGAGAAAGATGCTAAAGCCCTCGACGAAGAGATGGGCGAACTCTTTAACTACACAACCCTTGAGGAACAAGGTGTACTCAACAAAACTGCCAACCTCTACCTGCCTATCACGTTACTTGTTGGCTTTTTAGGCATCAACACTTTTGTTGAAAAAGGATGCATCACTCGCTTCTTCAATATCGGGGACCCTTGTCCCTCGACATGGGGGCTATTGGGTGGCGATATTATTACGCTTATAGTATTTGCCATCTGCCTCTACTTCCCAATAAGACATTATTTCAAATACAGAAAA","7.60","2.27","61983","MEAETYSRHIFIFPFQWDYIEKRGYASYNERTDIKKFDKLFSAVSPLKRQYFEIGASEERYNEYTYFHPFARRALFGTKENPSVYHYELSDTQGSYNISVKIDGVSTTYSLQLEKIAVSVFDTGVGTVAYFLRNDKHTSFEDILRINDSGRRIYPQYMAKGDRLAAKNSFLADRIYGSLGVLDFDDDFRQFEEDISHTNIFLPPDHIRQVFGYNKMDRTEDDGCQKFVFHQESERKDIIRISPVMDDRMFFITYYHSPYYAKKLRSKPKNFRRKREYNIYEEGRFGDLWFRYIFGDRGDKTVANTSVQREDVRRTTYARWSGEGTLFGLTKDSLVGISGWELMGDHITTMYYQMATLSLVQRSTILRFSNEIASITQLILDKKTKRKTEKQVKELYGNYIRFLNETYFREVTPQIQGIEMYDMLQSNMNIEKDAKALDEEMGELFNYTTLEEQGVLNKTANLYLPITLLVGFLGINTFVEKGCITRFFNIGDPCPSTWGLLGGDIITLIVFAICLYFPIRHYFKYRK","2080811 2079231","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm, Outer membrane","No hit found in gapped BLAST.","
InterPro
IPR003657
Domain
DNA-binding WRKY
SM00774\"[220-258]Tno description
InterPro
IPR013212
Domain
Mad3/BUB1 homology region 1
SM00777\"[381-475]Tno description
noIPR
unintegrated
unintegrated
tmhmm\"[459-479]?\"[500-520]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Feb 15 13:57:11 MST 2001","","Thu Feb 15 13:57:11 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG1739","2081553","2083427","1875","ATGCAATTCAATTATGATGTCATCGTGGTGGGTGCGGGCCATGCCGGCTGCGAAGCGGCTGCGGCTGCGGCCAAGCTCGGTTCGCAGGTATTGCTCATCACGCCGGACATGAACAAAATAGCCCAAATGAGCTGCAATCCGGCTGTCGGAGGAATAGCTAAGGGCCAGATAGTCAGGGAGATAGACGCCTTAGGGGGACGAATGGGTATCGTCACGGATGCTACGGCCATCCAGTTTCGTATGCTCAATCGGAGCAAAGGCCCTGCCATGTGGAGTCCGCGCGCTCAGAGCGACCGCATGCGCTTCATGGAAGCGTGGCGCGATATAGTGGAGCACGAGCCTAATCTGTACATGTGGCAGGACAGTGTACGCTGCCTCTCTATTCGTCAGGGTGCCGTCGCGGGAGTCGTGACGGCTCTCGGGGTAGAGTTTCAGGCTCGTACCGTGGTGCTGACTACAGGCACTTTCCTCGGAGGTGTCATGCACTTCGGGGAGCGTATGATCGAAGGAGGACGAATAGCCGAACCGGCTTTCCACGGCATCACGGAGCAGCTTCGTGATCTGGGCTTCAGAACCGACAGAATGAAGACGGGGACTCCGGCACGAATCGACGGCCGGAGCATCGATTTCAGTCTGACCACAGAGCAGTCGGGAGAAGAGGATCACCACCGTTTCTCCTATATGGATACGCCCCGAAGGGTGCTACGCCAAAGGAGTTGCTACGCACTCTACACCAATCCCGAGTGTCATGAGATACTAAGCAAAGGGTTGGATCGCTCCCCCCTGTACAACGGACAGATCCAAAGCATCGGCCCTCGATACTGCCCCAGCATAGAGACCAAGATCGTCACCTTCGCCGACAAGGAGATGCACCAACTGTTTCTCGAACCGGAAGGAGAGACCAGTAACGAGTTTTACCTCAATGGCTTCTCCTCGTCTTTGCCCTTGGAGATTCAGCTCGAAGCCCTGAAAGCCATTCCGGCTCTTCGCCATGTGCACATCTATCGTCCGGGGTATGCCATCGAATACGACTTCTTCGATCCCACACAATTAAGACATACGCTTGAAACCAAGCCGGTGAAAGGGCTGTTCTTCGCCGGTCAGATCAATGGCACGACCGGCTATGAGGAGGCCGCCGGACAGGGACTGATAGCCGGCATCAATGCTCACCTGCATTGCCATGGCGCAGGCGAGTTCACACTCGGACGGGATGAGGCTTACATAGGGGTACTGATCGATGACTTGGTGAGCAAAGGCGTGGACGAGCCCTACCGCATGTTTACATCCCGAGCCGAATATCGCATCTTGCTACGTCAGGACGATGCCGACATGAGGCTCACACCGAAGGCGGAAGCGATCGGGCTGGCAGACAGCAGACGCAGCGAATTGCTCCGAGAAAAGCAAGTATTTCGCGATAAGCTGATCGACTTTACGCACAAGTTTTCCCTCAAACCGGATCTGATCAACCCGCATCTGGAGTCGGCCGGCCACCTTCCTCTCAAGCAAGGAATCAAACTGTACGACCTGCTGCTCCGTCCTCAAATAGGAATGAATGAAGTCTGTTCGATGGTGCCCTCTCTCCAAAGAATCGTGGAAGAGATCCCGGCATCCAGACGAGAGGAAATCGTGGAAGCTGCAGAGATCCTGATCAAATACGACGGCTATATCAAAAGAGAAAGAGCCTTGGCCGACAAGATCAACAGACTCGAAAGTATCCGACTTCCGCAGCATGTAGATTATATGCAGATGCAGTCCCTCTCCACCGAAGCACGCCAAAAACTGACGAGCATCCGGCCGGAAACCATCGCGCAAGCATCTCGAATACCGGGAGTCTCTCCCCACGACGTAAGCATCCTTCTCGTACTCTGCGGAAGA","6.80","-1.79","69960","MQFNYDVIVVGAGHAGCEAAAAAAKLGSQVLLITPDMNKIAQMSCNPAVGGIAKGQIVREIDALGGRMGIVTDATAIQFRMLNRSKGPAMWSPRAQSDRMRFMEAWRDIVEHEPNLYMWQDSVRCLSIRQGAVAGVVTALGVEFQARTVVLTTGTFLGGVMHFGERMIEGGRIAEPAFHGITEQLRDLGFRTDRMKTGTPARIDGRSIDFSLTTEQSGEEDHHRFSYMDTPRRVLRQRSCYALYTNPECHEILSKGLDRSPLYNGQIQSIGPRYCPSIETKIVTFADKEMHQLFLEPEGETSNEFYLNGFSSSLPLEIQLEALKAIPALRHVHIYRPGYAIEYDFFDPTQLRHTLETKPVKGLFFAGQINGTTGYEEAAGQGLIAGINAHLHCHGAGEFTLGRDEAYIGVLIDDLVSKGVDEPYRMFTSRAEYRILLRQDDADMRLTPKAEAIGLADSRRSELLREKQVFRDKLIDFTHKFSLKPDLINPHLESAGHLPLKQGIKLYDLLLRPQIGMNEVCSMVPSLQRIVEEIPASRREEIVEAAEILIKYDGYIKRERALADKINRLESIRLPQHVDYMQMQSLSTEARQKLTSIRPETIAQASRIPGVSPHDVSILLVLCGR","2081552 2083426","The GIDA (glucose inhibited division protein A)function is unknown at this time. It appears tobe associated with oxidoreductase capacity andNAD/FAD-utilization.TIGR ID: PG1992","glucose inhibited division protein A(oxidoreductase)","Cytoplasm","Numerous significant hits to glucose inhibited division proteins in gapped BLAST; e.g. residues 5-621 are 44% similar to gb|AAG08950.1|AE004968_4 glucose-inhibited division protein A of Pseudomonas aeruginosa, residues 5-621 are 44% similar to gb|AAC22240.1| glucose inhibited division protein of Haemophilusinfluenzae Rd, residues 5-621 are 43% similar to gb|AAF95914.1| glucose inhibited division protein A of Vibrio cholerae.This sequence is similar to BT3268.","
InterPro
IPR002218
Family
Glucose-inhibited division protein A
PD003738\"[326-390]TGIDA
PTHR11806\"[10-621]TGIDA
PF01134\"[6-397]TGIDA
PS01280\"[271-285]NGIDA_1
PS01281\"[366-389]TGIDA_2
InterPro
IPR004416
Family
Glucose-inhibited division protein A subfamily
TIGR00136\"[5-621]TgidA
InterPro
IPR015424
Domain
Pyridoxal phosphate-dependent transferase, major region
SSF53383\"[208-375]TPyrdxlP-dep_Trfase_major
noIPR
unintegrated
unintegrated
G3DSA:3.50.50.60\"[1-154]TG3DSA:3.50.50.60
SSF51905\"[1-422]TSSF51905


","BeTs to 12 clades of COG0445COG name: NAD/FAD-utilizing enzyme apparently involved in cell divisionFunctional Class: DThe phylogenetic pattern of COG0445 is ----yqvceb-hujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB002218 (Glucose inhibited division protein A family) with a combined E-value of 2.1e-226. IPB002218A 22-65 IPB002218B 73-102 IPB002218C 136-190 IPB002218D 194-203 IPB002218E 237-269 IPB002218F 271-299 IPB002218G 339-390 IPB002218H 403-454 IPB002218I 574-623***** IPB000464 (Fumarate reductase / succinate dehydrogenase FAD-binding site) with a combined E-value of 1.9e-07. IPB000464A 6-27","Residues 5-621 are 44% similar to a (PROTEIN DIVISION A GLUCOSE) protein domain (PD003738) which is seen in GIDA_HAEIN.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Mon Dec 22 10:20:37 2003","Fri Mar 9 14:30:34 MST 2001","Mon Dec 22 10:20:37 2003","Fri Mar 9 14:30:34 MST 2001","Fri Mar 9 14:30:34 MST 2001","Fri Mar 9 14:30:34 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Mar 9 14:30:34 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 6 to 404 (E-value = 3.4e-201) place PG1739 in the GIDA family which is described as Glucose inhibited division protein A (PF01134)","Wed Mar 28 14:30:56 MST 2001","34541585","","","","","","1","","","PG1992" "PG1740","2083464","2085260","1797","ATGACCCCCGACGAACTGAACATCATCCTCCCCACCCTGCCGGAAAAACCGGGTTGCTACCAGTACTTCGATGAAGATGGGAAGGTAATCTATGTAGGCAAGGCCAAAAACCTTCGGCGCAGGGTCAGTTCGTATTTTTACAAGGAGCACGCAGACAGGAAAACCCGCATACTGGTCAGACAGATCAGGAGCATCAAATACATAGTTGTGGACAGCGAAGGGGATGCCCTGCTGCTCGAAAACTCACTGATCAAAGAGTATCAACCTCGGTATAATGTCCTCCTCAAAGATGGGAAGACATACCCCAGCATAGTGATCAAACGGGAACCTTTCCCACGTATATTCGCCACACGGGACATCAAAAAGGACGGATCCGAATACTTCGGCCCCTATCCGGGCGCACTCATTGCCAAAGGGATGCTCCGCCTTGTGAAAGAGATCTATCCGATCCGTACCTGCAAACTGGATCTGAGAGAGGAGAAAATCCGACAAGGACGGTACCGCGTCTGCCTGCAGTATCACATCAAGAAATGCAAAGGCCCCTGCATCGGCAATCAAACTTCGAACGAGTACGAAAGCAATGTATCGGAAATACGCGATCTGCTCCGAGGCAACTTGCACAGGCTTGTACGCATGTATCGCGACAGGATGCAGGTATACAGCGAAGGACTGCGCTTCGAAGAGGCACAGATATGCAAGGAGAGAATAGAGCTTCTTGAGCGATACGAAGCCAAGCACACGGTCGTACCGCGTAATATAGACAACGTAGATGTTTTCTCTTACGACGAAGACGAGCACACGGCCTATATCAACTACATGCACATAGAGCACGGAGGGATCAATCGTGTGTACACCTTGGAGTACAGAAAGCAGATAGAGGAATCGAAAGAAGAACTTCTTGCAGCGGCGATAACAGAGCTGAGACAAAGATTCGAAAGCAACGCTCACGAAATCGTTTTGCCGTTCGACACCGGTTGGCAAACGGGAGAGAGCATCACGACTACGATCCCCCGACGTGGAGACAAACGGAAACTGCTGGAATTATCCGAGAAGAACGTAGCTCAATACAAGCTCGACAAACTCAAACGTGCCGAGAAGCTCAATCCCGAGCAACGCGCCCTACATATCGTCCACGGGATCCAAAAGGATTTGCACTTGGATCGTCCGCCGAAACATATCGAATGCTTCGACAACTCGAATATACAGGGTACGAGTCCGGTGGCAGCCTGCGTTGTTTTCAAAATGGGGAAACCGAGCAAAAAGGATTACCGAAAGTTTCACGTGAAAACAGTCGAAGGGCCGAACGACTTCGCCTCCATGAGAGAAATCATCAGTCGGCATTACACCCGTCTGACGGAAGAGAACTTACCCCTACCCGACCTGATCGTCGTAGATGGAGGGAAAGGACAGCTTAGCGCAGCGTACGAAACATTAGATAAACTGGGGCTCATCGGCAAGATACCCATCATAGGATTGGCCGAACGTCTGGAGGAAATCTTTTTCCCGAAGGACCCCGTTCCGCTGATTTTGGACAAGAAAAGCGAAACGCTCAAGGTCATACAACACCTACGCGACGAAGCACACCGCTTCGGGATCGGGTTCCACCGCGATGTACGAAGTAAGAAACAAATTCAGAGCGAACTGGACAATATCAAAGGCATCGGTAAGAAAACAAAAGAAGATCTGCTCCGCCATTTCAAAAGCGTAAAGCGAATACGCTCCGCAGAAGAGGAAGAGCTTAGTGCTCTTATCGGCCGGAACAAAGCGAAACTATTATACGAAGGACTCAGAAAGAAA","10.00","24.03","69734","MTPDELNIILPTLPEKPGCYQYFDEDGKVIYVGKAKNLRRRVSSYFYKEHADRKTRILVRQIRSIKYIVVDSEGDALLLENSLIKEYQPRYNVLLKDGKTYPSIVIKREPFPRIFATRDIKKDGSEYFGPYPGALIAKGMLRLVKEIYPIRTCKLDLREEKIRQGRYRVCLQYHIKKCKGPCIGNQTSNEYESNVSEIRDLLRGNLHRLVRMYRDRMQVYSEGLRFEEAQICKERIELLERYEAKHTVVPRNIDNVDVFSYDEDEHTAYINYMHIEHGGINRVYTLEYRKQIEESKEELLAAAITELRQRFESNAHEIVLPFDTGWQTGESITTTIPRRGDKRKLLELSEKNVAQYKLDKLKRAEKLNPEQRALHIVHGIQKDLHLDRPPKHIECFDNSNIQGTSPVAACVVFKMGKPSKKDYRKFHVKTVEGPNDFASMREIISRHYTRLTEENLPLPDLIVVDGGKGQLSAAYETLDKLGLIGKIPIIGLAERLEEIFFPKDPVPLILDKKSETLKVIQHLRDEAHRFGIGFHRDVRSKKQIQSELDNIKGIGKKTKEDLLRHFKSVKRIRSAEEEELSALIGRNKAKLLYEGLRKK","2083460 2085259","This repair enzyme catalyzes the excision of UV-damaged nucleotide segments. It consists of three subunits. It is believed to be cytoplasmically located. Other subunits are PG1934 (A), PG0923 (A) and PG0346 (B).TIGR ID: PG1993.","excinuclease ABC subunit C","Cytoplasm","Numerous significant hits in gapped BLAST to excinuclease ABC subunit C; e.g. residues 10-580 are 39% similar to Z99118 of Bacillus subtilis, residues 10-598 are 38% similar to AJ223480 of Staphylococcus aureus.This sequence is similar to BT3266.","
InterPro
IPR000305
Domain
Excinuclease ABC, C subunit, N-terminal
PF01541\"[16-98]TGIY-YIG
SM00465\"[16-97]TGIYc
PS50164\"[17-93]TUVRC_1
InterPro
IPR001162
Domain
Excinuclease ABC, C subunit, C-terminal
PD005870\"[380-545]TUvrC_C
PF08459\"[380-532]TUvrC_HhH_N
PS50165\"[267-478]TUVRC_2
InterPro
IPR003583
Domain
Helix-hairpin-helix DNA-binding, class 1
SM00278\"[546-565]THhH1
InterPro
IPR004791
Family
Excinuclease ABC, C subunit
TIGR00194\"[6-579]TuvrC
InterPro
IPR009055
Domain
UvrB, C-terminal UvrC-binding
SSF46600\"[192-247]TUvrB_C
InterPro
IPR010994
Domain
RuvA domain 2-like
SSF47781\"[511-597]TRuvA_2_like
noIPR
unintegrated
unintegrated
G3DSA:1.10.150.20\"[545-598]TG3DSA:1.10.150.20
G3DSA:3.40.1440.10\"[15-102]TG3DSA:3.40.1440.10
SSF82771\"[15-99]TSSF82771


","BeTs to 13 clades of COG0322COG name: Nuclease subunit of the excinuclease complexFunctional Class: LThe phylogenetic pattern of COG0322 is --t--qvCEBRhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** PF01541 (Endo/excinuclease amino terminal domain) with a combined E-value of 4.5e-12. PF01541A 20-36 PF01541B 91-100 PF01541C 462-470","Residues 245-532 are 33% similar to a (SUBUNIT C ABC EXCINUCLEASE) protein domain (PD005870) which is seen in UVRC_BACSU.Residues 10-101 are 55% similar to a (SUBUNIT C ABC EXCINUCLEASE) protein domain (PD013358) which is seen in UVRC_ECOLI.Residues 102-192 are 41% similar to a (SUBUNIT C ABC EXCINUCLEASE) protein domain (PD005749) which is seen in UVRC_TREPA.","","Thu Jun 14 12:29:59 MDT 2001","","Thu Jun 14 12:29:59 MDT 2001","Thu Jun 14 12:29:59 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:29:59 MDT 2001","Thu Jun 14 12:29:59 MDT 2001","","Tue Mar 26 15:51:01 2002","Wed Mar 29 15:26:34 MST 2000","Mon Dec 22 10:18:43 2003","Tue Mar 26 15:51:01 2002","Mon Jun 25 15:13:46 MDT 2001","Mon Jun 25 15:13:46 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Thu Apr 6 16:20:15 MDT 2000","Thu Jun 7 16:13:05 MDT 2001","-58% similar to PDB:2NRT Crystal structure of the C-terminal half of UvrC (E_value = 2.0E_29);-58% similar to PDB:2NRV Crystal structure of the C-terminal half of UvrC (E_value = 2.0E_29);-58% similar to PDB:2NRW Crystal structure of the C terminal half of UvrC (E_value = 2.0E_29);-58% similar to PDB:2NRX Crystal structure of the C-terminal half of UvrC, in the presence of sulfate molecules (E_value = 2.0E_29);-58% similar to PDB:2NRZ Crystal structure of the C-terminal half of UvrC bound to its catalytic divalent cation (E_value = 2.0E_29);","","","Residues 16 to 98 (E-value = 5.1e-31) place PG1740 in the GIY-YIG family which is described as GIY-YIG catalytic domain (PF01541)","Mon Jun 25 15:13:46 MDT 2001","34541586","","","Sharma,S., Stark,T.F., Beattie,W.G. and Moses,R.E. 1986. Multiple control elements for the uvrC gene unit of Escherichia coli. Nucleic Acids Res. 14 (5), 2301-2318. PubMed: 3515318.Sancar,G.B., Sancar,A. and Rupp,W.D. 1984. Sequences of the E. coli uvrC gene and protein. Nucleic Acids Res. 12 (11), 4593-4608. PubMed: 6330676.","","Thu Apr 6 16:20:15 MDT 2000","1","","","PG1993" "PG1741","2085270","2085719","450","ATGAGAGTAGTAATACAAAGAGTAACGGAGGCATCCGTCAGCATCAGAGGAGCATTACACAGCCGTATAGGTCAGGGAGTGCTGATTCTCGTAGGCATAGAAGACCGAGACGGAGAGAGCGACATCGAACTATTAACTTCCAAGATCTCCAACCTGCGTATCTTCGATGACAGCGAAGGGGTGATGAACCTTTCCGTCAAAGACATCAATGGAGAAGCCTTGGTCGTAAGCCAATTTACACTCATGGGATCGACCCGGAAAGGGAACAGACCCAGCTACATAAAAGCTTCCCGTCCTGAGATAGCCATCCCTCTCTACGAGAGTTTCTGCAACAGCTTGTCCGCAAAACTGGGAAAAGCTGTCAGACAAGGCGTATTCGGAGCAGACATGCAGGTCGCATTGGTGAACGATGGGCCGGTAACCATATTGATTGACACCCACAACAAGGAG","6.50","-0.57","16254","MRVVIQRVTEASVSIRGALHSRIGQGVLILVGIEDRDGESDIELLTSKISNLRIFDDSEGVMNLSVKDINGEALVVSQFTLMGSTRKGNRPSYIKASRPEIAIPLYESFCNSLSAKLGKAVRQGVFGADMQVALVNDGPVTILIDTHNKE","2085269 2085718","TIGR ID: PG1994","conserved hypothetical protein","Cytoplasm","Residues 1-146 show 54% similarity to AE006249, L. lactis conserved hypothetical protein.Residues 1-146 show 50% similarity to X72832, S. equisimilisconserved hypothetical protein.Residues 1-144 show 46% similarity to AE001941, D. radioduransconserved hypothetical protein.","
InterPro
IPR003732
Family
D-tyrosyl-tRNA(Tyr) deacylase
PD005653\"[17-141]TDTyrtRNA_deacyls
G3DSA:3.50.80.10\"[1-146]TDTyrtRNA_deacyls
PTHR10472\"[1-147]TDTyrtRNA_deacyls
PF02580\"[2-146]TTyr_Deacylase
TIGR00256\"[1-147]TDTyrtRNA_deacyls
SSF69500\"[1-146]TDTyrtRNA_deacyls
noIPR
unintegrated
unintegrated
PTHR10472:SF4\"[1-147]TPTHR10472:SF4


","BeTs to 6 clades of COG1490COG name: Uncharacterized ACRFunctional Class: SThe phylogenetic pattern of COG1490 is ----yqv-ebrh---------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 29-146 are 54% similar to a (PROTEIN ORF1 CHROMOSOME ORF2) protein domain (PD005653) which is seen in O32042_BACSU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Feb 15 14:05:44 MST 2001","Thu Feb 15 14:05:44 MST 2001","Thu Feb 15 14:05:44 MST 2001","","Thu Feb 15 14:05:44 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","-62% similar to PDB:1J7G Structure of YihZ from Haemophilus influenzae (HI0670), a D-Tyr-tRNA(Tyr) deacylase (E_value = 3.5E_30);-63% similar to PDB:2DBO Crystal structure of D-Tyr-tRNA(Tyr) deacylase from Aquifex aeolicus (E_value = 6.0E_30);-61% similar to PDB:1JKE D-Tyr tRNATyr deacylase from Escherichia coli (E_value = 4.3E_28);-59% similar to PDB:2OKV c-Myc DNA Unwinding Element Binding Protein (E_value = 9.2E_23);-51% similar to PDB:2I5Q Crystal structure of Apo L-rhamnonate dehydratase from Escherichia Coli (E_value = 9.2E_23);","","","Residues 28 to 146 (E-value = 9.4e-60) place PG1741 in the Tyr_Deacylase family which is described as D-Tyr-tRNA(Tyr) deacylase (PF02580)","","34541587","","","","","","1","","","PG1994" "PG1742","2085727","2086074","348","ATGTCCGACATCACACTAAGAGAGGCACAAAAGAGTGTCGACCAATGGATTAAGACACTGGGTATCAGATACTTCAATGAGCTAACCAACATGGCCATCCTGACCGAAGAGGTAGGAGAAGTAGCACGTATCATCGCACGACGGTACGGAGAACAAAGTGAAAAGGAAAGCGACAAGAGCAAAGATTTGGCCGACGAAATGGCTGATGTTCTGTGGGTTCTGCTCTGCCTGGCCAACCAAACCGGTGTGGATCTGACCACCGCATTCCATAAGAATATCGAGAAGAAAACCGTTAGAGACAAAGAAAGACATCAACAAAATACGAAACTACACAACAATGGCAGCAAA","6.80","-0.33","13332","MSDITLREAQKSVDQWIKTLGIRYFNELTNMAILTEEVGEVARIIARRYGEQSEKESDKSKDLADEMADVLWVLLCLANQTGVDLTTAFHKNIEKKTVRDKERHQQNTKLHNNGSK","2085699 2086073","TIGR ID: PG1995","conserved hypothetical protein","Cytoplasm","Residues 1-103 have 42% similarity to L38424, B. subtilis unknown protein.Residues 1-103 have 40% similarity to AP001512, B. halodurans BH1679 unknown conserved protein.Residues 2-110 have 37% similarity to AE001954, D. radiodurans conserved hypothetical protein .","
InterPro
IPR004518
Domain
NTP pyrophosphohydrolase MazG, putative catalytic core
PF03819\"[25-104]TMazG
InterPro
IPR012359
Family
NTP pyrophosphohydrolase MazG-related, YpjD
PIRSF029904\"[4-112]TUCP029904_pph
noIPR
unintegrated
unintegrated
SSF101386\"[1-108]TSSF101386


","BeTs to 5 clades of COG1694COG name: Uncharacterized ACR, MazG familyFunctional Class: SThe phylogenetic pattern of COG1694 is A--K-qVceBrh-----lin-Number of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","Residues 36-88 are 45% similar to a (PROTEIN LONG 74AA CONSERVED) protein domain (PD029233) which is seen in YPJD_BACSU.","","Thu Jun 14 12:30:41 MDT 2001","","Thu Jun 14 12:30:41 MDT 2001","Thu Jun 14 12:30:41 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:30:41 MDT 2001","Thu Jun 14 12:30:41 MDT 2001","","","Tue Mar 6 18:31:31 MST 2001","Mon Jun 25 14:35:21 MDT 2001","Fri Jun 1 10:43:57 MDT 2001","","Mon Jun 25 14:35:21 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Mar 6 18:31:31 MST 2001","-64% similar to PDB:2GTA Crystal Structure of the putative pyrophosphatase YPJD from Bacillus subtilis. Northeast Structural Genomics Consortium Target SR428. (E_value = 2.1E_18);","","","Residues 25 to 104 (E-value = 2.1e-23) place PG1742 in the MazG family which is described as MazG nucleotide pyrophosphohydrolase domain (PF03819)","Mon Jun 25 14:35:21 MDT 2001","34541588","","","","","","1","","","PG1995" "PG1743","2086064","2086930","867","ATGGCAGCAAATAAATACGAAATGGCCTTCGCTCAGTTCGATCCGGCCGAGTCAGAAGAGAGAATTTTACTGAAAACCGATCAAATAATACGGGATCACTATTCACGATTCGACACTCCGGAAACGAAGAAATTCCTGCATGGCGTCATCGATCTGACCAGCCTGAACGCCACGGATTCGGAGGAGTCCATCACAAAGTTTACCGAGAGCGTCAATGACTTCGAGGACACAGATCCCACGATTCCATCCGTAGCGGCGATCTGCGTATACCCCAACTTCGTCTCCACCGTGAGAGAAACGCTCACAGCCGAAAACGTGAAAGTGGCCAGCGTCAGTGGCTGTTTCCCCGCTTCACAGAGCTTTATCGAAGTTAAGTTGGCCGAAACGGCACTGGCCGTAAGCGATGGAGCAGATGAAATAGACATAGTACTCAATATGGGTAAGTTCCTAAGTGGGGACTATGAAGCAGCGGCCACGGAAATCGAAGAGCAAATAGCAGCAGCAAAGGGAGCTACCGTCAAAGTGATACTGGAGACAGGCGCATTGAAAACACCGGAGAATATCCGTCGCGCTACGATTCTCTCCCTTTTCTGCGGTGCACATTTTGTAAAGACATCCACAGGCAAAGGCTACCCCGGAGCGAGCCTTGAAGCAGCCTATACGATGTGCAAGGTGCTGAAACAGTACTACGGACTTTTTGGCGAAGTACGTGGTATCAAACTGTCCGGAGGCATTCGCACAACTGAAGATGCTGTGAAATACTACTGTCTGATCGAAACGCTTTTGGGCAAAGAATGGCTTACGCCGGCATATTTCCGCATAGGAGCCAGCAGCTTGGTGGACGCCCTCCGGCAGGATATTATGGTC","4.60","-12.49","31541","MAANKYEMAFAQFDPAESEERILLKTDQIIRDHYSRFDTPETKKFLHGVIDLTSLNATDSEESITKFTESVNDFEDTDPTIPSVAAICVYPNFVSTVRETLTAENVKVASVSGCFPASQSFIEVKLAETALAVSDGADEIDIVLNMGKFLSGDYEAAATEIEEQIAAAKGATVKVILETGALKTPENIRRATILSLFCGAHFVKTSTGKGYPGASLEAAYTMCKVLKQYYGLFGEVRGIKLSGGIRTTEDAVKYYCLIETLLGKEWLTPAYFRIGASSLVDALRQDIMV","2086063 2086929","TIGR ID: PG1996","deoxyribose-phosphate aldolase","Cytoplasm","Residues 50-281 have 39% similarity to U37429, C. elegansputative deoxyribose-phosphate aldolase.Residues 49-283 have 39% similarity to AL512667, S. coelicolor putative deoxyribose-phosphate aldolase.Residues 49-275 have 34% similarity to U14003, E. coli deoxyribose-phosphate aldolase. ","
InterPro
IPR002915
Family
Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase
PF01791\"[45-285]TDeoC
InterPro
IPR011343
Family
Deoxyribose-phosphate aldolase
PIRSF001357\"[44-283]TDeoC
PTHR10889\"[1-288]TDeoC
TIGR00126\"[45-272]TdeoC
InterPro
IPR013785
Domain
Aldolase-type TIM barrel
G3DSA:3.20.20.70\"[46-287]TAldolase_TIM
noIPR
unintegrated
unintegrated
SSF51569\"[27-278]TSSF51569


","BeTs to 9 clades of COG0274COG name: Deoxyribose-phosphate aldolaseFunctional Class: FThe phylogenetic pattern of COG0274 is --t--qvcebrh--gp-l---Number of proteins in this genome belonging to this COG is 1","***** PF01791 (Deoxyribose-phosphate aldolase) with a combined E-value of 2.9e-27. PF01791A 110-145 PF01791B 173-179 PF01791C 191-208 PF01791D 237-249","Residues 50-252 are 37% similar to a (DEOXYRIBOSE-PHOSPHATE ALDOLASE PHOSPHODEOXYRIBOALDOLASE) protein domain (PD005801) which is seen in DEOC_CAEEL.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Mar 7 08:34:36 MST 2001","Wed Mar 7 08:34:36 MST 2001","Wed Mar 7 08:34:36 MST 2001","Wed Mar 7 08:34:36 MST 2001","Wed Mar 7 08:34:36 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 7 08:34:36 MST 2001","-55% similar to PDB:1JCL OBSERVATION OF COVALENT INTERMEDIATES IN AN ENZYME MECHANISM AT ATOMIC RESOLUTION (E_value = 3.8E_32);-55% similar to PDB:1KTN Structural Genomics, Protein EC1535 (E_value = 3.8E_32);-55% similar to PDB:1P1X COMPARISON OF CLASS I ALDOLASE BINDING SITE ARCHITECTURE BASED ON THE CRYSTAL STRUCTURE OF 2-DEOXYRIBOSE-5-PHOSPHATE ALDOLASE DETERMINED AT 0.99 ANGSTROM RESOLUTION (E_value = 3.8E_32);-55% similar to PDB:1JCJ OBSERVATION OF COVALENT INTERMEDIATES IN AN ENZYME MECHANISM AT ATOMIC RESOLUTION (E_value = 2.5E_31);-54% similar to PDB:1O0Y Crystal structure of Deoxyribose-phosphate aldolase (TM1559) from Thermotoga maritima at 1.9 A resolution (E_value = 1.3E_24);","","","Residues 44 to 272 (E-value = 4.4e-50) place PG1743 in the DeoC family which is described as Deoxyribose-phosphate aldolase (PF01791)","Thu May 17 15:27:45 MDT 2001","34541589","","","","","","1","","","PG1996" "PG1744","2088122","2087247","876","ATGACGAAAGCGATAAAGATCTTGAACGGTTCCACCGGTAAACACGTCCGTCCGCTCCTGACCGGATTGGTCGCAGCCGTCTGTGCCGGCAAAACGAATTCGACGACTCTTGAGGCGGCTGTCCTGCTGGAAATGATCCATACGGCAACGCTGATCCACGATGACGTCATCGATATGGCTTCTACGCGTCGGGGAGTACCGACCCTCAATGCTTTTTTCGACAATCGTGTGGCCGTTTTGATGGGGGACTTCGTGCTCTCTTCCGCCTTGATGCGTGCCATCGCTCTGAATGATATTCGCATCATCACGATTATATCCCGGCTGGGACGTGAGCTGTCGGAGGGTGAGATCAGGCAGTTCGAGACAGCCGACAAAGTGATAATAGACGAAGACATTTATATGGGGGTGATCCGACAGAAAACAGCCATGCTCTTTAGTGCTTGTGCAGAGGTCGGTGCTATTACCGTTCAGGCTCCAGTAGAGATTGTGGAAAGGGTGAAGAGGGTAGGGGAGTTGCTCGGCTATGCTTTCCAGATCAGAGACGACATATTCGATTACTATCGGAATGACGTAGGCAAACCTACGGGCAATGATATACGGGAAGGGAAGATTACACTGCCTCTGCTGTTCGCTCTCAAGAACGAGCAGTCTGCGCTGCGAGATCATTGTCTCACCATTCTGGACCAAAAAGCTTTCTCGGAAGAAGATTTACAGCTTCTTACCTCCTTTGCCATAGAGCATGGGGGTATAGTTTATGCCGAAAGAAAAATGGCTGAATTTATAGACAAAGCAAAGGCTGAGTTGGCTGTTTTCCCTGACTCAGATGCTCTGCAGTCGTTGCTTGCTTTGGCTGATTTTATCGTACAAAGAGCGAAA","5.30","-5.92","32170","MTKAIKILNGSTGKHVRPLLTGLVAAVCAGKTNSTTLEAAVLLEMIHTATLIHDDVIDMASTRRGVPTLNAFFDNRVAVLMGDFVLSSALMRAIALNDIRIITIISRLGRELSEGEIRQFETADKVIIDEDIYMGVIRQKTAMLFSACAEVGAITVQAPVEIVERVKRVGELLGYAFQIRDDIFDYYRNDVGKPTGNDIREGKITLPLLFALKNEQSALRDHCLTILDQKAFSEEDLQLLTSFAIEHGGIVYAERKMAEFIDKAKAELAVFPDSDALQSLLALADFIVQRAK","2088217 2087246","TIGR ID: PG1998","octaprenyl-diphosphate synthase ispB","Cytoplasm","Residues 7-292 have 37% similarity to AE004131, V. cholerae octaprenyl-diphosphate synthase.Residues 13-290 have 35% similarity to AE004870, P. aeruginosa octaprenyl-diphosphate synthase.Residues 8-290 have 34% similarity to AF153713, Pseudomonas sp. octylprenyl diphosphate synthase-like protein.","
InterPro
IPR000092
Family
Polyprenyl synthetase
PTHR12001\"[13-290]TPolyprenyl_synt
PF00348\"[1-253]Tpolyprenyl_synt
PS00444\"[173-185]TPOLYPRENYL_SYNTHET_2
PS00723\"[51-65]TPOLYPRENYL_SYNTHET_1
InterPro
IPR008949
Domain
Terpenoid synthase
SSF48576\"[1-292]TTerpenoid_synth
noIPR
unintegrated
unintegrated
G3DSA:1.10.600.10\"[1-292]TG3DSA:1.10.600.10
PTHR12001:SF12\"[13-290]TPTHR12001:SF12


","BeTs to 16 clades of COG0142COG name: Geranylgeranyl pyrophosphate synthaseFunctional Class: HThe phylogenetic pattern of COG0142 is AmtkYQVCEBRHUJ--olinxNumber of proteins in this genome belonging to this COG is 2","***** IPB000092 (Polyprenyl synthetase) with a combined E-value of 3.9e-27. IPB000092A 12-22 IPB000092B 40-86 IPB000092D 173-195","Residues 40-179 are 37% similar to a (SYNTHASE PYROPHOSPHATE TRANSFERASE SYNTHETASE) protein domain (PD000572) which is seen in O82832_GLUSU.","","Thu Jun 14 12:30:53 MDT 2001","","Thu Jun 14 12:30:53 MDT 2001","Thu Jun 14 12:30:53 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:30:53 MDT 2001","Thu Jun 14 12:30:53 MDT 2001","","","Thu May 17 16:31:00 MDT 2001","Mon Jun 25 14:29:25 MDT 2001","Wed Mar 7 08:46:57 MST 2001","Mon Jun 25 14:29:25 MDT 2001","Mon Jun 25 14:29:25 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 13-216 have 32% similarity to PG0705, bifunctional short isoprenyl diphosphate synthase.","Mon Jun 25 14:29:25 MDT 2001","Wed Mar 7 08:46:57 MST 2001","-48% similar to PDB:1WY0 Crystal structure of geranylgeranyl pyrophosphate synthetase from Pyrococcus horikoshii Ot3 (E_value = 1.3E_32);-48% similar to PDB:1V4H Crystal Structure of Octaprenyl Pyrophosphate Synthase from Hyperthermophilic Thermotoga maritima F52A mutant (E_value = 2.7E_17);-47% similar to PDB:1V4E Crystal Structure of Octaprenyl Pyrophosphate Synthase from Hyperthermophilic Thermotoga maritima (E_value = 1.3E_16);-47% similar to PDB:1V4I Crystal Structure of Octaprenyl Pyrophosphate Synthase from Hyperthermophilic Thermotoga maritima F132A mutant (E_value = 1.7E_16);-49% similar to PDB:1WKZ Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima K41A mutant (E_value = 1.7E_16);","","","Residues 1 to 253 (E-value = 1.9e-45) place PG1744 in the polyprenyl_synt family which is described as Polyprenyl synthetase (PF00348)","Mon Jun 25 14:29:25 MDT 2001","34541591","","","","","","1","","","PG1998" "PG1745","2088914","2088279","636","ATGAATCTCCTCTCTCCTTCCGATCCGATCGTCCTCTCTACGGCTTACCTGCCACCGATCCAATACTTCACGAAGCTGTTGCATCCCGAGGGTGTTCTTTTGGAGACGGCAGAAAACTTTGTGAAGCAAAGCTATCGCAATCGTTGCCACATAGCCGGACCCGAAGGTATGCAACCGCTGACCATACCGGTCGAAAAATCTCCTTCTCCCAAGGCACCGATTAGAGATATTCGCATCAGTGAGCATGGCAACTGGCGTCATTTGCACCTGAATGCTCTTATCAGCTCTTACGGTTCGGCACCGTTTTTTGACCATTATATGACTGAAATAGAGCCGTTTTACAGGCATAAATATACCTTCCTTTGGGACTTTAATTTGGATCTCCTTTCCGTATGCCTTGAATGGCTGGACATTTCGCCGTTAATTATGTTTACTTTTGAGTACGTGGAGGACTGTCCCAATGACTTTCGCTACTCGATCCGTCCCAAGCAAGCTCCCGAAGATGAAAGTTTCCGCCCACGTGTTTACTACCGAACTTTTGCCCATAAGTATGGATTCCTGCCCAACCTAAGTATTGTCGATCTCATTTTTCATGAAGGACCATCCGCAATACAGACCTTGAAGGAGTGTATTCGC","6.40","-3.02","24783","MNLLSPSDPIVLSTAYLPPIQYFTKLLHPEGVLLETAENFVKQSYRNRCHIAGPEGMQPLTIPVEKSPSPKAPIRDIRISEHGNWRHLHLNALISSYGSAPFFDHYMTEIEPFYRHKYTFLWDFNLDLLSVCLEWLDISPLIMFTFEYVEDCPNDFRYSIRPKQAPEDESFRPRVYYRTFAHKYGFLPNLSIVDLIFHEGPSAIQTLKECIR","2089120 2088278","TIGR ID: PG1999","conserved hypothetical protein","Cytoplasm","No significant hits found using gapped BLAST search of GenBank.","
InterPro
IPR014985
Family
WbqC-like protein family
PF08889\"[13-208]TWbqC
noIPR
unintegrated
unintegrated
PD116240\"[12-207]TPD116240


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 16-200 are 26% similar to a (PROTEIN RV1507C) protein domain (PD116240) which is seen in O87979_BORBR.","","Thu Jun 14 12:31:28 MDT 2001","","Thu Jun 14 12:31:28 MDT 2001","Thu Jun 14 12:31:28 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:31:28 MDT 2001","Thu Jun 14 12:31:28 MDT 2001","","","Fri Sep 10 15:13:24 2004","Wed Mar 7 08:55:51 MST 2001","Wed Mar 7 08:55:51 MST 2001","","Mon Jun 25 14:26:07 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 7 08:55:51 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jun 25 14:26:07 MDT 2001","34541592","","","","","","1","","","PG1999" "PG1746","2089561","2088938","624","ATGCAGATTAAATCGCGGTATAGAAACAGAATTTTTTTCATTGGCTTGCCGGCAGTCGTTCTGTTGTCGGCCGTCCTCATTCGTCTCTTCCTTGTTACTACCTATCGTGTTCGAAGCGATGCCATGCTCCCGACCTACCGGTCCGGAAAGCTGCTATGGATCAATCGGATTGCATCGCCGGACAGGGGAGATATTCTGGTCATAAAGTACAGACAAGATGGCGAAGCGGACTCGCGATTCTATCTGGCACGGCTGATAGGATTGCCCGGTGACACCTTGTTTCTATCAAAGGGTGGGGTAGTCGCAAACAGGCAAAAACTGAAGTTGCCCACCTCTTTGCTTCCTCGTGAGCCATATAAAATTATCGTTCCGAGGAATGACAGGACTTATCGCCTGACTCCTCTGTCTTTACTTGCCTACCGCAGAGCAATCGAAGAAGAGTGCAGTTCGAACATCAGCTTTCGCCGAGGAAAACTCTACCGCGACGGTGCCGAAACGGCTTTCTTCCATTTCCGCCGCAATTACTACTGGATTCTGGCGGACAATCCTGCGAGCGGACCCGATTCCCGCCATCTCGGTATTGTGCCGGAAGAGAGTATAGTGGGAGTGGTCATGAACGCAAAT","11.10","15.43","23849","MQIKSRYRNRIFFIGLPAVVLLSAVLIRLFLVTTYRVRSDAMLPTYRSGKLLWINRIASPDRGDILVIKYRQDGEADSRFYLARLIGLPGDTLFLSKGGVVANRQKLKLPTSLLPREPYKIIVPRNDRTYRLTPLSLLAYRRAIEEECSSNISFRRGKLYRDGAETAFFHFRRNYYWILADNPASGPDSRHLGIVPEESIVGVVMNAN","2089560 2088937 [Shorter 2262 184 99]","TIGR ID: PG2000","signal peptidase I (leader peptidase)","Inner membrane, Cytoplasm","Residues 20-202 have 27% similarity to AF188620, B. pertussis leader peptidase Lep.Residues 20-202 have 25% similarity to AE004316, V. cholerae signal peptidase I. Residues 20-202 have 26% similarity to X56466, P. fluorescens leader peptidase 1.","
InterPro
IPR000223
Family
Peptidase S26A, signal peptidase I
PR00727\"[30-46]T\"[81-93]T\"[171-190]TLEADERPTASE
TIGR02227\"[13-206]Tsigpep_I_bact
InterPro
IPR006198
Domain
Peptidase S24, S26A and S26B
PF00717\"[36-105]TPeptidase_S24
InterPro
IPR011056
Domain
Peptidase S24 and S26, C-terminal region
G3DSA:2.10.109.10\"[25-205]TPept_S24_S26_C
SSF51306\"[28-205]TPept_S24_S26_C
InterPro
IPR014037
Family
Peptidase S26A
PTHR12383\"[20-118]T\"[169-205]TPeptidase_S26A
noIPR
unintegrated
unintegrated
PTHR12383:SF1\"[20-118]T\"[169-205]TPTHR12383:SF1


","BeTs to 9 clades of COG0681COG name: Signal peptidase IFunctional Class: NThe phylogenetic pattern of COG0681 is AmTKYqvCeBrhuj--OLinxNumber of proteins in this genome belonging to this COG is 2","***** IPB000508 (Signal peptidase) with a combined E-value of 2.3e-06. IPB000508A 24-54 IPB000508B 171-190","Residues 19-202 are 28% similar to a (PEPTIDASE SIGNAL I PROTEASE HYDROLASE TRANSMEMBRANE) protein domain (PD001438) which is seen in LEPT_BACSU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Fri Mar 9 16:10:44 MST 2001","Wed Mar 7 09:03:46 MST 2001","Wed Mar 7 09:03:46 MST 2001","Wed Mar 7 09:03:46 MST 2001","Wed Mar 7 09:03:46 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 121-202 have 36% similarity to PG1747, a possible signal peptidase I.","Tue Jun 5 13:07:45 MDT 2001","Wed Mar 7 09:03:46 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 1 to 202 (E-value = 2.6e-05) place PG1746 in the Peptidase_S26 family which is described as Signal peptidase I (PF00461)","Thu May 17 16:36:27 MDT 2001","34541593","","","","","","1","","","PG2000" "PG1747","2090948","2089554","1395","ATGACCTTCCATTGGAAAGATTTGACGCCATGGCGTCGTATAAAAGGCGTTGCCATTACTATTCTTTACCTCCTTTTTTGTATATGGGCCGGCCCGTTTTGGCTGATTTTTCTGCCTTTGATCGTAGATTATTATTTCTTCCATATTATCAAATGGGGCTGGTATAAGAATATCCGAAACAAGACGCTTCGGATCATTTGCAGCTGGGTGGCAGACATTATCTACTGTGTCGTAGCCGTTACCTTTATCTTCGCTTTCCTGTTTCAGAACTTCGCCATTCCGACTTCTTCGCTGGAGAAGACCTTGCTTATAGGCGACTACCTCTTCGTGAGCAAGCTTTCGTACGGACCGCGTTCGCCTATGACTCCGCTCGGTGTGCCGCTGACGCACAATACGATGCCATTGACGGGTGGCAAATCGTTCTCGGACAAACCTCTCTTGCCGTACAAGCGACTGAAGGGTTTCGGACACGTCAAGGAGGGGGATTTGGTGGTCTTTAACTTCCCTGCAGGCGATACGGTGGCCGTCAAGCAGCCCAATCCGGATTATTATATGTGGAAGAAACTCGTAGGACGGGAGGAGCTTTGGAGTAATCCGGATTTCTACGGGGAGATCGTTTACCGCCCCGTGGACAGACGCGACCACTATGTGAAACGCTGTGTGGGTATGCCCGGACAAGAATTGAGCATCAGGAATAATCAGATCTATATAGATGGCAAGGAGCAGCGCAATCCGCGCAATATGCAGCTGAACTATTTGGTGAGGATGAGCAGAGAGATGAGTGTAGACTTGATAGACGAACTGGGTATCAGCTACGATGATGTGCGTGCTGCTTCAAGCGAGGAATTGAAAGCTTCGGTCGGTTCGAATCTTATCGATTCGGCGTCGAATCAACCTCAAATCATTTATCATTTGCCACTGACGCAGGGTATGCTGGACAAGCTGCAAGCAGAGCCTTCTTTCGTCAAGGCTGTAGAGGAGCCTACCCCTATCGGCCCCCTGTATCCGCTGGAGTATGAAACGGGATGGACGCGCGACAATTACGGTCCTATCGTGATCCCGGCCAAGGGCATGACGGTTCGTTTGACGCCATTGAATCTGGCCTTGTACAGTCGTTGTATTCGCAATTTCGAAGGAAATAAGCTCGTGCAAAAAGCTGACGGCACGGTTCTCATCAACGGCCGTCCGGCCGATTCCTACACCTTCAAGATGGACTATTATTTCATGATGGGGGATAATCGGCACAACTCTGCAGATAGCCGCTATTGGGGTTTCGTGCCGGAGGATCATATCGTCGGTAAGCCTGTATTCATCTGGTTGTCCCTGAATAAGGACAAGAGTCTCTTCGGAGGTAAGATCCGCTTCGGTAGAATGATGCGAACGGTCAATGCAGAT","9.80","11.70","53554","MTFHWKDLTPWRRIKGVAITILYLLFCIWAGPFWLIFLPLIVDYYFFHIIKWGWYKNIRNKTLRIICSWVADIIYCVVAVTFIFAFLFQNFAIPTSSLEKTLLIGDYLFVSKLSYGPRSPMTPLGVPLTHNTMPLTGGKSFSDKPLLPYKRLKGFGHVKEGDLVVFNFPAGDTVAVKQPNPDYYMWKKLVGREELWSNPDFYGEIVYRPVDRRDHYVKRCVGMPGQELSIRNNQIYIDGKEQRNPRNMQLNYLVRMSREMSVDLIDELGISYDDVRAASSEELKASVGSNLIDSASNQPQIIYHLPLTQGMLDKLQAEPSFVKAVEEPTPIGPLYPLEYETGWTRDNYGPIVIPAKGMTVRLTPLNLALYSRCIRNFEGNKLVQKADGTVLINGRPADSYTFKMDYYFMMGDNRHNSADSRYWGFVPEDHIVGKPVFIWLSLNKDKSLFGGKIRFGRMMRTVNAD","2090947 2089553","TIGR ID: PG2001","possible signal peptidase I","Inner membrane, Cytoplasm","Residues 75-170 and the carboxyl terminal 50 residues match numerous signal peptidase I's while residues 250-350 show no similarity using gapped BLAST. Highest similariies include residues 74-169 and 394-458 showing 50% and 31% similarity to spP23697, from Salmonella typhimurium, residues 80-191 and 406-462 with 34% and 54% similarity to gbAAK02146 from Pasteurella multocida and residues 19-122 and 407-458 with 28% and 57% similarity to spP57347 in Buchnera sp.This sequence is similar to BT3319.","
InterPro
IPR000223
Family
Peptidase S26A, signal peptidase I
PR00727\"[86-102]T\"[402-421]TLEADERPTASE
TIGR02227\"[69-443]Tsigpep_I_bact
PS00761\"[407-420]TSPASE_I_3
InterPro
IPR006198
Domain
Peptidase S24, S26A and S26B
PF00717\"[92-240]TPeptidase_S24
InterPro
IPR011056
Domain
Peptidase S24 and S26, C-terminal region
G3DSA:2.10.109.10\"[81-462]TPept_S24_S26_C
SSF51306\"[84-462]TPept_S24_S26_C
InterPro
IPR014037
Family
Peptidase S26A
PTHR12383\"[77-117]T\"[156-173]T\"[214-253]T\"[400-444]TPeptidase_S26A
noIPR
unintegrated
unintegrated
PTHR12383:SF1\"[77-117]T\"[156-173]T\"[214-253]T\"[400-444]TPTHR12383:SF1
SSF81343\"[28-109]TSSF81343


","BeTs to 11 clades of COG0681COG name: Signal peptidase IFunctional Class: NThe phylogenetic pattern of COG0681 is AmTKYqvCeBrhuj--OLinxNumber of proteins in this genome belonging to this COG is 2","***** IPB000508 (Signal peptidase) with a combined E-value of 8.6e-14. IPB000508A 80-110 IPB000508B 402-421","Residues 407-446 are 25% similar to a (PEPTIDASE SIGNAL I PROTEASE HYDROLASE TRANSMEMBRANE) protein domain (PD001438) which is seen in O69160_BRAJA.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Fri Mar 9 17:17:40 MST 2001","Fri Jul 25 15:09:04 2008","Fri Mar 9 16:06:33 MST 2001","Fri Mar 9 16:06:33 MST 2001","Fri Mar 9 16:06:33 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 351-433 of PG1747 show 36% similarity to residues 121-202 of PG1746, a signal peptidase I. ","Fri Mar 9 16:44:20 MST 2001","Fri Jul 25 15:09:04 2008","-73% similar to PDB:1B12 CRYSTAL STRUCTURE OF TYPE 1 SIGNAL PEPTIDASE FROM ESCHERICHIA COLI IN COMPLEX WITH A BETA-LACTAM INHIBITOR (E_value = 1.4E_11);-73% similar to PDB:1KN9 CRYSTAL STRUCTURE OF A BACTERIAL SIGNAL PEPTIDASE APO-ENZYME, IMPLICATIONS FOR SIGNAL PEPTIDE BINDING AND THE SER-LYS DYAD MECHANISM. (E_value = 1.4E_11);-73% similar to PDB:1T7D Crystal structure of Escherichia coli type I signal peptidase in complex with a lipopeptide inhibitor (E_value = 1.4E_11);-43% similar to PDB:1ABR CRYSTAL STRUCTURE OF ABRIN-A (E_value = 1.4E_11);-46% similar to PDB:1MHS Model of Neurospora crassa proton ATPase (E_value = 1.4E_11);","","","Residues 58 to 433 (E-value = 3.1e-05) place PG1747 in the Peptidase_S26 family which is described as Signal peptidase I (PF00461)","Mon Mar 26 14:50:13 2001","34541594","","","","","","1","","","PG2001" "PG1748","2091680","2090967","714","ATGAAAATAGTACTGATAGGGTATGGCAAGATGGGACATGTGATCGAACGGATTGCATGCAGCCGAGGGCATGAAGTGGTGCTGACGATCGATGCCGGAGAGGAAGATCGTTTCGATTCGATAGCGTTTCGTTCGGCCGATGTAGCCATCGAATTTACCCGTCCGGATGCGGCCTATGCGAATTGCTCGCGCTGTATGGATAAGTCCGTGCCGGTGGTGTGCGGGACTACGGGGTGGACAGAGCGTCTGCCCGAGCTGGAAGAACGCTGCCGACGGGAGGGAAAGACCCTCTTCTGGGCTTCGAACTTCAGCATCGGGGTCAATCTTTTTTTCTCGCTCAGTCGTATGTTTGCCCGATTGATGAGCCGGCACGATCAGTATCGTCCTCACCTGACGGAAATCCATCATGTACATAAGTTGGACGCTCCGAGCGGAACGGCTATTACACTGGCCGAGGGATTGATAGCCGAATCTCCCTCGCTGGACGCTTGGAGACTGACGGAGACACCGGAGGAGAACGAACTCCCGATCACCTCCATCCGAGAAGGCGAAGTCCCGGGTACGCACAGCATATCCTATACATCCGAGGTGGATCGGCTGACGATATGCCACGAAGCTTTTGGTCGAGAGGGATTCGCTCTTGGTGCCGTGTTGGCTGCCGAATATGCTGCCACGCACAAAGGCTTTCTGACGATGAACGATTTAATCAGCTTA","5.60","-7.86","26458","MKIVLIGYGKMGHVIERIACSRGHEVVLTIDAGEEDRFDSIAFRSADVAIEFTRPDAAYANCSRCMDKSVPVVCGTTGWTERLPELEERCRREGKTLFWASNFSIGVNLFFSLSRMFARLMSRHDQYRPHLTEIHHVHKLDAPSGTAITLAEGLIAESPSLDAWRLTETPEENELPITSIREGEVPGTHSISYTSEVDRLTICHEAFGREGFALGAVLAAEYAATHKGFLTMNDLISL","2091727 2090966","This enzyme is involved in the biosynthetic pathway for lysine synthesis.TIGR ID: PG2002","dihydropicolinate reductase","Cytoplasm","Numerous hits with gapped BLAST to dihydrodipicolinate reductase proteins; e.g. residues 1-2362 are 33% similar to dihydrodipicolinate reductase (AE001041) of Archaeoglobus fulgidus, residues 16-238 are 30% similar to dihydrodipicolinate reductase (AE002377) of Neisseria meningitidis, residues 47-221 are 31% similar to dihydrodipicolinate reductase (AE001309) of Chlamydia trachomatis.","
InterPro
IPR000846
Family
Dihydrodipicolinate reductase
PD004105\"[1-212]TDapB
PF01113\"[1-103]TDapB_N
PF05173\"[106-237]TDapB_C
InterPro
IPR011770
Family
Dihydrodipicolinate reductase, bacterial and plant
PIRSF000161\"[1-238]TDHPR
TIGR00036\"[1-238]TdapB
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.720\"[1-136]TG3DSA:3.40.50.720
PTHR20836\"[1-238]TPTHR20836
SSF51735\"[1-238]TSSF51735
SSF55347\"[105-209]TSSF55347


","BeTs to 12 clades of COG0289COG name: Dihydrodipicolinate reductaseFunctional Class: EThe phylogenetic pattern of COG0289 is amt--qvcebrhuj----inxNumber of proteins in this genome belonging to this COG is 1","***** IPB000846 (Dihydrodipicolinate reductase) with a combined E-value of 7.4e-25. IPB000846B 72-85 IPB000846C 98-118 IPB000846D 128-148 IPB000846E 175-209","Residues 1-152 are 32% similar to a (DIHYDRODIPICOLINATE REDUCTASE) protein domain (PD004105) which is seen in O29353_ARCFU.","","Thu Jun 14 12:31:40 MDT 2001","","Thu Jun 14 12:31:40 MDT 2001","Thu Jun 14 12:31:40 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:31:40 MDT 2001","Thu Jun 14 12:31:40 MDT 2001","","Mon Jun 25 14:24:11 MDT 2001","Wed Mar 22 10:38:56 MST 2000","Mon Jun 25 14:24:11 MDT 2001","Thu Jun 14 12:31:40 MDT 2001","Mon Jun 25 14:24:11 MDT 2001","Mon Jun 25 14:24:11 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Fri Apr 7 13:33:22 MDT 2000","Tue Jul 22 12:53:33 2008","-44% similar to PDB:1VM6 Crystal structure of Dihydrodipicolinate reductase (TM1520) from Thermotoga maritima at 2.27 A resolution (E_value = 4.0E_18);-45% similar to PDB:1ARZ ESCHERICHIA COLI DIHYDRODIPICOLINATE REDUCTASE IN COMPLEX WITH NADH AND 2,6 PYRIDINE DICARBOXYLATE (E_value = 3.5E_14);-45% similar to PDB:1C3V DIHYDRODIPICOLINATE REDUCTASE FROM MYCOBACTERIUM TUBERCULOSIS COMPLEXED WITH NADPH AND PDC (E_value = 3.5E_14);-45% similar to PDB:1DIH THREE-DIMENSIONAL STRUCTURE OF E. COLI DIHYDRODIPICOLINATE REDUCTASE (E_value = 3.5E_14);-45% similar to PDB:1DRU ESCHERICHIA COLI DHPR/NADH COMPLEX (E_value = 3.5E_14);","","","Residues 1 to 103 (E-value = 1.5e-14) place PG1748 in the DapB_N family which is described as Dihydrodipicolinate reductase, N-terminus (PF01113)Residues 106 to 237 (E-value = 3e-29) place PG1748 in the DapB_C family which is described as Dihydrodipicolinate reductase, C-terminus (PF05173)","Tue Jul 22 12:53:33 2008","34541595","","","Reddy SG, Sacchettini JC, Blanchard JS. Expression, purification, and characterization of Escherichia coli dihydrodipicolinatereductase. Biochemistry 1995 Mar 21;34(11):3492-501. PubMed: . ","","Fri Apr 7 13:32:06 MDT 2000","1","","","PG2002" "PG1749","2093084","2091744","1341","ATGACTATGATGCAGTGGGAGCGATTGCTCTCCGACAAAAGGGTGGGCATGGAGCACTACCACCAACCGAAACAATCGGCTCAGCCATGGGAGAGAACGGACTTCGAACGAGATTATGACCGCATGGTCTTTTCTTCACCTTTTCGCCGACTGCAAAACAAGGCACAGGTATTCCCCCTTGCAGGCAATATATTCGTACACAATCGTCTTACGCACAGTCTCGAAGTGAGCTGTGTGGGACGCTCGCTCGGCAATAATATCACACGCGGACTGAAAGCGCGGTATGGCGAATTGCCATGGGAGTCGGGGGCCATCAGTGCCATCGTGTCGGCTGCCTGTCTGGCTCACGACATGGGCAATCCTCCTTTCGGTCACAGCGGCGAGCGTGCCATTTCGGCTTATTTCCGCGAAGGAAAGGGTAGGGTATGGGAGGACGCAGTCCGCAAGGAAGGAGGTCGCTGGGAAGACTTCCTGCACTTCGAAGGCAATGCAAACGCTTTCCGTCTGCTGACGCATCAGTTCGAAGGCCGTCGGAAAGGAGGCTTTGCCCTTACGTACAGTACGGTGGCTTCGATCGTGAAGTATCCATACAGCAGCGAGATGGCAGGCAAGGCCGGCAAATTCGGATTCTTCGCCACGGAAGAGGATACTTTCCTTATGATCGCCGAAGAGCTTGGCATGCTATGCCGAAACGAACATCCGGTGAAATACGTTCGCTATCCGCTGGTCTATCTGGTGGAGGCAGCCGACGACATCTGCTACCAAATCATGGATATAGAGGATGCTTATAAGCTCCGTATCCTTACTTATGCCGAGACGGAAAACCTCTTTCTGGCTTTTTGTCCCGAGGAGGAACTCGGGCATATACGGGGAGTACTCGATCATATCACGGATGCCAATGAGCAGATCGCTTACCTCCGTTCGCGTGTGATCAGTCTGTTGGTCGAATCATGCACCCGGGTCTTTCTGGATCATGAGGACGAGATATTGTCCGGTACCTTCTCCGGCACTCTCATCGGAGCCATGGAACCACGGCTGAAAGAGGCTTACGGGGCATGTGCCCGAATGGCCTATTCGAAGATCTACGTGGCACGCGACGTGGTGGATGTGGAGCTTGCCGGACATCAGATATTCGGTGCGCTGATAGATAAGATGATGCAGGCCCTCACCAATCCGGATCATGCCTATAGCCGGACGCTGCTCAGTCGGGTAAGTACGCAGTACAACATACGGGAGGAGAGCCTCTACGGTAAGATACAGTGCACGCTGGACTATATATCCGGCATGACCGATATATACGCGCTGGATCTGTACCGCAAGATCACGGGAATGAACTTGCGC","6.40","-4.97","50955","MTMMQWERLLSDKRVGMEHYHQPKQSAQPWERTDFERDYDRMVFSSPFRRLQNKAQVFPLAGNIFVHNRLTHSLEVSCVGRSLGNNITRGLKARYGELPWESGAISAIVSAACLAHDMGNPPFGHSGERAISAYFREGKGRVWEDAVRKEGGRWEDFLHFEGNANAFRLLTHQFEGRRKGGFALTYSTVASIVKYPYSSEMAGKAGKFGFFATEEDTFLMIAEELGMLCRNEHPVKYVRYPLVYLVEAADDICYQIMDIEDAYKLRILTYAETENLFLAFCPEEELGHIRGVLDHITDANEQIAYLRSRVISLLVESCTRVFLDHEDEILSGTFSGTLIGAMEPRLKEAYGACARMAYSKIYVARDVVDVELAGHQIFGALIDKMMQALTNPDHAYSRTLLSRVSTQYNIREESLYGKIQCTLDYISGMTDIYALDLYRKITGMNLR","2093083 2091743","TIGR ID: PG2003","dGTP triphosphohydrolase","Cytoplasm","Residues 4-446 have 37% similarity to D64002, Synechocystis sp. dGTP triphosphohydrolase. Residues 35-441 have 28% similarity to M31772, E. coli dGTP triphosphohydrolase.Residues 36-444 have 29% similarity to AE004542, P. aeruginosa deoxyguanosinetriphosphate triphosphohydrolase.This sequence is similar to BT3460. ","
InterPro
IPR003607
Domain
Metal-dependent phosphohydrolase, HD region
SM00471\"[65-264]THDc
InterPro
IPR006261
Family
Deoxyguanosinetriphosphate triphosphohydrolase
TIGR01353\"[31-443]TdGTP_triPase
InterPro
IPR006674
Domain
Metal-dependent phosphohydrolase, HD region, subdomain
PF01966\"[69-228]THD


","BeTs to 4 clades of COG0232COG name: dGTP triphosphohydrolaseFunctional Class: FThe phylogenetic pattern of COG0232 is -------ce-rh--------xNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 13-441 are 37% similar to a (TRIPHOSPHOHYDROLASE) protein domain (PD018288) which is seen in Q55731_SYNY3.Residues 155-441 are 24% similar to a (TRIPHOSPHOHYDROLASE DEOXYGUANOSINETRIPHOSPHATE DGTPASE) protein domain (PD152687) which is seen in DGTP_ECOLI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu May 17 16:47:11 MDT 2001","Mon Dec 22 11:17:58 2003","Wed Mar 7 09:33:41 MST 2001","","Wed Mar 7 09:33:41 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 7 09:33:41 MST 2001","-40% similar to PDB:2DQB Crystal structure of dNTP triphosphohydrolase from Thermus thermophilus HB8, which is homologous to dGTP triphosphohydrolase (E_value = 3.4E_20);","","","No significant hits to the Pfam 11.0 database","Thu May 17 16:47:11 MDT 2001","34541596","","","","","","1","","","PG2003" "PG1750","2094220","2093231","990","ATGAATACGGACAACCCAAAATCACATATTTCCCGAATAGCGTATCCTGCCATAATAGTGTTCTTGATCCTTACGCTTTTAGGCAGTTTGGTAGAGAGATTTCATCCTTTCACTTCCTGGCTTACACCTCCTGTGGCCCTGTTGATGGGCTTGGCCTATGCTCTTATCTTCGGTTCCACGCACCGGCGGGCGAACAAATTGGGCTCGAAAGTACTATTGCAATACTCCGTAGTAGGACTCGGTTTCGGTATGAATCTGGGCGAGTCGTTGGCATCCGGTCGCGATGGTATGATGTTTACGATAATTTCCGTGTTCGGCACTCTTCTGTTAGGGTGGTTCATCGGGCGGAAAATCCTGCAGATGAATCGCAATACTTCCGCTCTCATCAGTGCCGGAACGGCTATCTGCGGCGGTAGTGCCATTGCGGCAGTGGGTCCCATATTGAAAGCCGAAGAGCATGAAATGTCTGTGGCGTTGGGTACCGTCTTCCTGCTCAATGCCGTTGCGCTCTTCATCTTTCCGTCGATAGGCCACTGGCTTGCTCTGGATCAGCAGCAGTTCGGCACTTGGGCAGCCATCGCCATCCACGATACGAGTTCGGTGGTAGGTGCCGGATCGGCTTATGGAGAAGAAGCACTCAGGGTGGCTACAACCATCAAACTGACAAGGGCCTTGTGGATCGTACCCCTTACTCTGGTATTCTCTTTTGTCTATAAAACGAAGGGAGCCAAACGCTTTCCCGTACCCCTGTTCATCCTCTTTTTTATCGGGGCTATCATCCTGAATACCTATCTGCTGGAGGCATATTTCCCTGAGGTCGGGCGTTTTGTTGCTTCCTTGGCCCGAAAAGGCCTTACCCTGTCCCTCTTTTTTATCGGAGCATCGCTGACCAAGGAAGTGATTGCGAGCGTGGGTGTTCGTGCTCTGCTGCAGGGATTGTTCCTGTGGATACTGATCAGTGTCGGCTCTCTTGCTTTCATTTTGCTGATC","10.70","11.39","35583","MNTDNPKSHISRIAYPAIIVFLILTLLGSLVERFHPFTSWLTPPVALLMGLAYALIFGSTHRRANKLGSKVLLQYSVVGLGFGMNLGESLASGRDGMMFTIISVFGTLLLGWFIGRKILQMNRNTSALISAGTAICGGSAIAAVGPILKAEEHEMSVALGTVFLLNAVALFIFPSIGHWLALDQQQFGTWAAIAIHDTSSVVGAGSAYGEEALRVATTIKLTRALWIVPLTLVFSFVYKTKGAKRFPVPLFILFFIGAIILNTYLLEAYFPEVGRFVASLARKGLTLSLFFIGASLTKEVIASVGVRALLQGLFLWILISVGSLAFILLI","2094219 2093230","TIGR ID: PG2004","conserved membrane protein","Inner membrane, Cytoplasm","Residues 7-300 have 25% similarity to AL139076, C. jejuni putative integral membrane protein. Residues 72-328 have 25% similarity to AE00030, E. coli hypothetical protein.Residues 19-237 have 25% similarity to AE006182, P. multocida unknown protein.This sequence is similar to BT4609.","
InterPro
IPR004630
Family
Conserved hypothetical protein 698
PF03601\"[69-266]TCons_hypoth698


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 72-324 are 26% similar to a (PROTEIN CONSERVED LYSP-NFO INTERGENIC) protein domain (PD024619) which is seen in YEIH_ECOLI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Mar 7 09:41:57 MST 2001","Mon Jan 5 15:13:38 2004","Wed Mar 7 09:41:57 MST 2001","","Wed Mar 7 09:41:57 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 7 09:41:57 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 16 to 312 (E-value = 9.4e-53) place PG1750 in the Cons_hypoth698 family which is described as Conserved hypothetical protein 698 (PF03601)","Thu May 17 16:50:44 MDT 2001","34541597","","","","","","1","","","PG2004" "PG1751","2094730","2095086","357","ATGAAAGAAAGATTGAACCAAACCGTACGCTATTTTCTGCCTATACTCTTCGCAGTATATGCCGGCCTGGTCATATCTTTCACTCACGTCCATATCATCAATGGCGTGATCATCGTCCACTCCCACGTACAGTGGGGCGACAACGAAAGCGATCCGCAGGACAATCCGCATTCGGATTCGGAATTGATTCTGTACAATCAGCTTTCGGCCATATTCACGACTTATTTGGATACGCCGGCCATAGACTTGAAAGAACCTGTGAGGGTTGTCGGCGTCGTTCCTTTCTTTTGCGATAATCTTACTGCTCTCATTTCGGAGCTAACTCCTTCCAATCATCTCAGGGCTCCTCCCGTAGCC","5.50","-4.62","13320","MKERLNQTVRYFLPILFAVYAGLVISFTHVHIINGVIIVHSHVQWGDNESDPQDNPHSDSELILYNQLSAIFTTYLDTPAIDLKEPVRVVGVVPFFCDNLTALISELTPSNHLRAPPVA","2094729 2095085","TIGR ID: PG2006","hypothetical protein","Cytoplasm","This sequence corresponds to gi:34397915 in Genbank.","
noIPR
unintegrated
unintegrated
signalp\"[1-26]?signal-peptide
tmhmm\"[12-32]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","Wed Mar 9 12:48:08 2005","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 9 12:48:08 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541598","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Wed Mar 9 12:48:08 2005","","1","","","PG2006" "PG1752","2095386","2097884","2499","ATGAAACAACTAAACATTATCAGCTTCATCATTGCTTTCCTATTCTTAGGAACGAGCGCATCGGCTCAGCAATCGGGCGGATCCGTTACAGGTACCGTAGTGGACAAAAGCTCAAAAGAACCTATCGCATACGTACAAGTATTCGTCAAAGGAACCACTCTCGGAACTTCCACGGATGCAAACGGAAACTACTCGATCAAGGGAATCCCTTCGGGTAATCAAACTATCGTAGCCCGACTCATGGGTTACTCCACTTGCGAAGAAAAAGTACATATAGAAAAGGGTGGTTCCCGCCACGTAGACCTCTATCTGACCGAAGAGATTCTCTCTCTCGATGGGGTAGTGGTATCTGCCAATAGAAACGAGACTTTCCGCCGTCAAGCACCCTCGTTGGTAACGGTACTGTCGCCGGAACTTTTCCTCAAAACCAACTCTACCAACCTGAGTCAGGGACTTAAGTTCCAGCCCGGTCTGCGCGTGGAGGACAACTGTCAGAACTGCGGTTTCAACCAAGTTCGTATCAATGGACTCGAAGGAGCCTATTCGCAAATTCTTATCGACAGCCATCCCATCTTCAGTTCGCTTGCCGGTGTCTATGGCTTGGAGCAGATGCCTGCCAATATGATCGAACGTGTAGAAGTAATTCGCGGTGGAGGTTCGGCTCTGTTCGGCTCTAATGCTGTGGGAGGCGTTATCAACGTAATTACGAAAGAACCGCTTCGCAATTCGGCCGAGATCAGCCATTCTACGATGACCTTCGACCACGCGAAAGGGTGGGGGAGCTTCCAAAATACGACCCAGTTCAACGGTTCTATGCTGACGGAAGACCGCAAAGCCGGTGTCATGGTATTCGGCCAACACAACTACCGTCCCGGACAGGATATAGACGGCGACAACTTTACCGAACTACCCAATCTGCGCAACCGCTCGCTCGGTTTCCGCTCATACTATAAGACCGGTCTCTACAGCAAAGCAACCCTCGAATATCACAGCATGCAGGAGTACCGTCGTGGTGGCGACAGACTGGACAATCCTCCTTTCGAAGCCCAGATAGCGGAATATCTCCAGCACTATATCAATGGCGGAAGTTTCAAATTCGATCAGGGCTTCAGCGGTGGCAAGGATTTCTTCAGTCTGTATGCTTCAGCACAAGACGTTCAGCGTCGTAGCTACTACGGGGGTGGCGACTATACCGAAAATCTGCTGAACGGAGCAGTTCAGAGTGGAAGCACCGAATCGGACGAATACAACGATGCTTTCACGGCTCTTACTTCCTACGGGACTACCAAGGGATTCGATTTGCAAGGAGGAGGTATGTACCGTCATACCTTCGGAGAAAACTGGGACTTTACCGGCGGACTCGAATATATCTACGGCCAACTCGATGACAGAAGCGGCTACAGACCGAGCAAAATAGATCAGAATACCTCTACTTTTAGTCAGTACGACCAGCTCGAATATAAGACGGAGAAGTTAAGTGCCCTTATCGGAGCACGTATCGACTATGTTCTCCTCAATCAGGATGGCAAACGCTATATCGATCCGCTCTTCATTTTCAGTCCTAGAGCCAACGTACGATACAATCCCAATAAGAATCTCAGCTTCCGACTCTCATACAGCGAAGGATTCCGCGCTCCTCAGTATTTCGATGAAGATCTGCACGTAGAGTTGGCCGGTGGTACTCCTATCAGCCGTGTCCTTTCCCCCAATCTGAAAGAAGAACGTTCACGAAGCATCAGTGCTTCTTTCGATTATTACCACAGAGCCGACGAATGGCAATTCAATATCATGGGAGAAGCCTTCTCCACCTTTATCAGCAATCAGTTCAAACCATCCGATAAGGTCGAAACCACGAGCGATGGCAAAGAATGGATCATTCGTACCATCTACAACGACAAGGATGGAGTATCGAAGGTATATGGTGTGAATCTGGAGGGAAGAATCGCCTACAACAAATCGTTCGACCTCCAGCTCGGCGGTACATGGCAGAGAAGCCGCTACGGAAGCATCTATACCGCTGTGGAAGCGGACAAAACAACGGGACAAGCCGAGATCTCTGTGAAAGACTATGTACGCACTCCGAATCTGTACGGCTATTTCGTTGCTACGGTACGTCCTACCGAGCACTTCGCCATCAATCTCTCCGGTACATTCACGGGCAAAATGGATGTAGTACACGAAGCCTATGAAGGCGATATTCCCGCAGAACACATAGCTCCGGACGGATCGTTCGACTTTGAAATGAATGGTCAGCAATTCAAAGGTTTGGCCGAAGGTCATGCCAAGCTCGTCAAGACTCCGGCCTTCGCCGATATAGACCTCAAGCTGAGCCACGACTTCCACCTTGCTTCCACTATGACCTTGGAATTGAATGCCGGAATACAGAACATATTCAACAGCTATCAGAAAGACACGGACAAGGGACCGGGTAGAGCTTCTACTTACGTATACGGTCCTATGCAGCCCAGAAGGATTTTCGTCGGTACAAAGATCAATTTC","6.00","-9.97","92738","MKQLNIISFIIAFLFLGTSASAQQSGGSVTGTVVDKSSKEPIAYVQVFVKGTTLGTSTDANGNYSIKGIPSGNQTIVARLMGYSTCEEKVHIEKGGSRHVDLYLTEEILSLDGVVVSANRNETFRRQAPSLVTVLSPELFLKTNSTNLSQGLKFQPGLRVEDNCQNCGFNQVRINGLEGAYSQILIDSHPIFSSLAGVYGLEQMPANMIERVEVIRGGGSALFGSNAVGGVINVITKEPLRNSAEISHSTMTFDHAKGWGSFQNTTQFNGSMLTEDRKAGVMVFGQHNYRPGQDIDGDNFTELPNLRNRSLGFRSYYKTGLYSKATLEYHSMQEYRRGGDRLDNPPFEAQIAEYLQHYINGGSFKFDQGFSGGKDFFSLYASAQDVQRRSYYGGGDYTENLLNGAVQSGSTESDEYNDAFTALTSYGTTKGFDLQGGGMYRHTFGENWDFTGGLEYIYGQLDDRSGYRPSKIDQNTSTFSQYDQLEYKTEKLSALIGARIDYVLLNQDGKRYIDPLFIFSPRANVRYNPNKNLSFRLSYSEGFRAPQYFDEDLHVELAGGTPISRVLSPNLKEERSRSISASFDYYHRADEWQFNIMGEAFSTFISNQFKPSDKVETTSDGKEWIIRTIYNDKDGVSKVYGVNLEGRIAYNKSFDLQLGGTWQRSRYGSIYTAVEADKTTGQAEISVKDYVRTPNLYGYFVATVRPTEHFAINLSGTFTGKMDVVHEAYEGDIPAEHIAPDGSFDFEMNGQQFKGLAEGHAKLVKTPAFADIDLKLSHDFHLASTMTLELNAGIQNIFNSYQKDTDKGPGRASTYVYGPMQPRRIFVGTKINF","2095385 2097883","Veith et al. 2002 identified this protein by two-dimensional gel electrophoresis and peptide mass fingerprinting of outer membranes prepared from strain W50. They present the following results: Based on signal peptide sequence comparisons to PG0626, PG0627, PG1592, PG1840, PG0836, PG0023, PG1893, the mature N-terminus of this protein is predicted to be pyroglutamate.TIGR ID: PG2008","tonB-linked outer membrane receptor P90","Outer membrane, Extracellular","This sequence corresponds to the previously sequenced AF237556 in GenBANK.","
InterPro
IPR000531
Domain
TonB-dependent receptor
PF00593\"[520-833]TTonB_dep_Rec
InterPro
IPR008969
Domain
Carboxypeptidase regulatory region
SSF49464\"[28-107]TCarboxypepD_reg
InterPro
IPR012910
Domain
TonB-dependent receptor, plug
PF07715\"[124-231]TPlug
noIPR
unintegrated
unintegrated
G3DSA:2.170.130.10\"[104-236]TG3DSA:2.170.130.10
G3DSA:2.40.170.20\"[242-833]TG3DSA:2.40.170.20
SSF56935\"[112-833]TSSF56935


","BeTs to 4 clades of COG1629COG name: Outer membrane receptor proteins, mostly Fe transportFunctional Class: PThe phylogenetic pattern of COG1629 is -----q-CE--HUJ-------Number of proteins in this genome belonging to this COG is 8","No significant hit to the Blocks database.","Residues 172-238 are 43% similar to a (RECEPTOR PROTEIN OUTER MEMBRANE PRECURSOR SIGNAL TONB) protein domain (PD000492) which is seen in CIRA_ECOLI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Thu Feb 7 16:06:00 2002","Mon Feb 11 12:18:14 2002","Thu Dec 7 12:39:01 MST 2000","Thu Feb 7 16:06:00 2002","","Mon Mar 26 13:31:31 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1752 is 40% similar to PG0637, a tonB-linked outer membrane receptor. Residues 1-546 are 26% similar to PG0601, tonB-linked outer membrane receptor. Residues 1-302 are 26% similar to PG0899, a conserved hypothetical protein. Residues 109-250 and 453-723 are similar to PG1358 tonB dependent receptor HmuR. Five weaker similarities include:PG0582, tonB-linked receptor T1r, PG1496, a hypothetical protein,PG1242, tonB-linked outer membrane receptorPG0910, a possible tonB-linked outer membrane protein PG1308, a hypothetical protein.","Thu May 17 11:40:24 MDT 2001","Mon Mar 26 13:31:31 2001","-51% similar to PDB:1NQE OUTER MEMBRANE COBALAMIN TRANSPORTER (BTUB) FROM E. COLI (E_value = 1.1E_14);-51% similar to PDB:1NQF OUTER MEMBRANE COBALAMIN TRANSPORTER (BTUB) FROM E. COLI, METHIONINE SUBSTIUTION CONSTRUCT FOR SE-MET SAD PHASING (E_value = 1.1E_14);-51% similar to PDB:1NQG OUTER MEMBRANE COBALAMIN TRANSPORTER (BTUB) FROM E. COLI, WITH BOUND CALCIUM (E_value = 1.1E_14);-51% similar to PDB:1NQH OUTER MEMBRANE COBALAMIN TRANSPORTER (BTUB) FROM E. COLI, WITH BOUND CALCIUM AND CYANOCOBALAMIN (VITAMIN B12) SUBSTRATE (E_value = 1.1E_14);-51% similar to PDB:1UJW Structure of the complex between BtuB and Colicin E3 Receptor binding domain (E_value = 1.1E_14);","","","Residues 126 to 833 (E-value = 4.2e-19) place PG1752 in the TonB_dep_Rec family which is described as TonB dependent receptor (PF00593)","Thu May 17 11:40:24 MDT 2001","34541599","","Veith,P., Talbo,G., Slakeski,N., Dashper,S., Moore,C.,Paolini,R., Reynolds,E., Major outer membrane proteins and proteolytic processing of RgpA, and Kgp of Porphyromonas gingivalis W50, Biochem J. 2002 (in press).Ross,B., Barr,I., Patterson,M., Agius,C., Rothel,L., Margetts,M.,Hocking,D. and Webb,E.P. gingivalis polypeptides and nucleic acids.Patent: Australia (AU 98/01023)-PCT 10-DEC-1998;","","Thu Feb 7 16:06:00 2002","","1","","","PG2008" "PG1753","2098457","2099191","735","ATGATTATAGTCAGCAGAGCAATAGTTCTCCACAATACGGCTTATAACGATAGTTATAGTATAGCCCATCTTTTCAGTAGAGAGAGTGGCAGAGTGTCCTATCTGATACCACGTTCATCCAAGCGAGGGAAAAGTGGCGGTAGCTTGCGTTTGCTTATTTCTCCTCTGAACGAACTGGAGATTACGGCCGAACACAAGCAGCACCGCGATTTGCACTTTATCAAAGAAGCCAAACTATGCAGTTTGCATGGCCGTATTCAGTCCGATCCGGTAAGGAATAGTATAGCACTCTTTCTGGCAGAATTTCTTTATCTGATCTTACGACTGCCGGAAGCCGATACGAATCTGTATGATTTTGTGGCTTTTTCCATAGATAAGTTGGAAGAAATGGACGGGCCGATGGCTAATTTTCATCTGGCTTTTCTTTTTCGTTTGCTTGTTCCATTGGGGTTGATACCCGATTTACAGTTCGGAGGAAGTGTTATTCCGCGTTGGTTCGATCCTGCTGATGGTCGCTTCGTACCGAATGCTCCTGCTCATGGAAGGGGAATTCCACCCCATCAATCGACATATTTACAGCTCTTTAGTCGTATTACATTCGATAATATGAAAGCTTTTCGGCTTTCGAGAGCTGAGCGAAGACAGGTTTTGGATTATCTGGTGGACTACTATCGCTTTCACCTTCCGCCTTTCCCTCTGTTGAAGACGCCCGACATTCTTTCGACTTTGTTCGAT","9.70","5.36","28066","MIIVSRAIVLHNTAYNDSYSIAHLFSRESGRVSYLIPRSSKRGKSGGSLRLLISPLNELEITAEHKQHRDLHFIKEAKLCSLHGRIQSDPVRNSIALFLAEFLYLILRLPEADTNLYDFVAFSIDKLEEMDGPMANFHLAFLFRLLVPLGLIPDLQFGGSVIPRWFDPADGRFVPNAPAHGRGIPPHQSTYLQLFSRITFDNMKAFRLSRAERRQVLDYLVDYYRFHLPPFPLLKTPDILSTLFD","2098456 2099190","TIGR ID: PG2009","hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR003717
Family
Recombination protein O, RecO
PF02565\"[1-240]TRecO
TIGR00613\"[3-243]Treco


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541600","","","","","","1","","","PG2009" "PG1754","2099363","2101012","1650","ATGCTGGACAATGCAGATACGACCGAACTCGTGGATGCATTCTACCGAGATTTGGAGTTTGGTACAGGCGGACTTCGCGGCATCATGGGAGCCGGAACCAATCGTATGAACCGCTATACGGTAGGCGCAGCTACTCAAGGACTCTCCAACTATCTCTTGCGCGAGTTTGCCGGTTCTTCAAATATCAGTGTCGTTATCGGCTACGACTGTCGGAACAATAGTCGTTTTTTTGCCGATACGGCAGCGGCTGTATTCTCGGCCAACGGCATCGGGGTTTATCTGTTTGAGGAACTTCGTCCCACACCGGAAATATCTTACGCCATTCGTCATCTGGGATGTAAGAGCGGTGTAATGATTACAGCTTCGCACAATCCTAAGGAATACAACGGCTATAAGGCTTATTGGGAAGACGGGGCACAGATTATAGCTCCACACGATCGTAATATCATTGCCGAGGTCAATAGAATTCGCTCCGTTGATGAGATCAAATTCGAAGCCAAGCCCGAGCTGATTCGGATGATAGGTGAGAATATCGATTCGGCTTTCATTGCTGAAGTCAAGGCACTGAGTCTTTCTCCCGAAAGCATTGCCCGTCATCGGGATATGAAGATCGTATACACGCCTATCCACGGTACCGGAAGTACGGTGGTACCCCGTGCCTTACGTGAATATGGTTTTGCCAATATCATTCACGTACCCGAACAGGATGTTGTAAGCGGAGACTTCCCTACGGTACATTCTCCCAATCCCGAAGAGCCTGCAGCTCTCGCCATGGCTATAGCCAAAGCGGAAGAAACAGGTGCCGATTTGGTTTTGGCCAGCGACCCCGATGCAGATAGAATAGGAGTTGCTGTGCGCAATAATGAGGGTAGGATGGTGCTCATCAATGGCAACGAGATTTGTTCGCTGCTTATCTATTATTCCATCATGCGTCGCAAGGAATTGGGCGATTTGCATCCTGATGATTATATCGTCAAGACGATTGTGACTACGGAATTGATCCGCGATATAGCGAAGAAAGAGCATGTGAGCATGTTCGATTGCTACACCGGTTTCAAATGGATAGCAGCCGTAATAAGAGAGAATGAAGGTCGTCGCCGCTATATAGGAGGTGGAGAGGAGAGTTATGGATTTTTGTGGGAAGACTTTATTCGAGACAAGAGTTCGGTATCTGCTTGTGCACTCTTCTGTGAAATGGCAGCTTGGGCTTTGGATCGAGGCATGAGTGTCTATCGACTCATCCGCAGCATCTATTTGGAATACGGTCTTTACTACGAAAAGGGACTTAGTGTGGTGCGTAAAGGCAAATCCGGAGCAGAAGAGATAGAAGCCATGATGAGAAATTATCGTGAGTATGCACCTGTAGAACTCGGAGGCTCGCCTGTGCAGGAAATATTGGACTATGCTTCTCTCGAAGGAAAAGATTTCACAAGAGGAGAGAAGTTTTCACTCGATATGCCTACAACGAGCAATGTTCTTCAGTACAAGACCGAGGATGGCACCAAGGTTTCCATCCGTCCGTCGGGTACTGAACCGAAAATCAAGTTTTACATCGGAGTTCATTTCTCGGTCGCTAATGAGCAGGAATTAGACCGGGCCTATATAGTAGCAGAAGAAAAGATTGCTACCATCCTCCACGACCTCGGTGTC","5.10","-15.57","61274","MLDNADTTELVDAFYRDLEFGTGGLRGIMGAGTNRMNRYTVGAATQGLSNYLLREFAGSSNISVVIGYDCRNNSRFFADTAAAVFSANGIGVYLFEELRPTPEISYAIRHLGCKSGVMITASHNPKEYNGYKAYWEDGAQIIAPHDRNIIAEVNRIRSVDEIKFEAKPELIRMIGENIDSAFIAEVKALSLSPESIARHRDMKIVYTPIHGTGSTVVPRALREYGFANIIHVPEQDVVSGDFPTVHSPNPEEPAALAMAIAKAEETGADLVLASDPDADRIGVAVRNNEGRMVLINGNEICSLLIYYSIMRRKELGDLHPDDYIVKTIVTTELIRDIAKKEHVSMFDCYTGFKWIAAVIRENEGRRRYIGGGEESYGFLWEDFIRDKSSVSACALFCEMAAWALDRGMSVYRLIRSIYLEYGLYYEKGLSVVRKGKSGAEEIEAMMRNYREYAPVELGGSPVQEILDYASLEGKDFTRGEKFSLDMPTTSNVLQYKTEDGTKVSIRPSGTEPKIKFYIGVHFSVANEQELDRAYIVAEEKIATILHDLGV","2099236 2101011","TIGR ID: PG2010","phosphomannomutase/ phosphoglucomutase","Cytoplasm","Numerous significant hits to phosphomannomutase in gapped BLAST; e.g. residues 6-529 are 42% similar to dbj|BAB04825.1| phosphomannomutase of Bacillus halodurans, residues 6-544 are 41% similar to pir||C69835 phosphomannomutase homolog of Bacillus subtilis, residues 9-545 are 40% similar to gb|AAC65616.1| phosphomannomutase of Treponema pallidum.This sequence is similar to BT1548.","
InterPro
IPR005841
Family
Phosphoglucomutase/phosphomannomutase
PR00509\"[115-129]T\"[201-220]T\"[268-283]TPGMPMM
PS00710\"[116-125]TPGM_PMM
InterPro
IPR005844
Domain
Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I
PF02878\"[17-160]TPGM_PMM_I
InterPro
IPR005845
Domain
Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II
PF02879\"[180-292]TPGM_PMM_II
noIPR
unintegrated
unintegrated
G3DSA:3.40.120.10\"[7-155]T\"[203-284]T\"[294-426]TG3DSA:3.40.120.10
PTHR22573\"[81-518]TPTHR22573
PTHR22573:SF2\"[81-518]TPTHR22573:SF2
SSF55957\"[426-518]TSSF55957


","BeTs to 17 clades of COG1109COG name: PhosphomannomutaseFunctional Class: GThe phylogenetic pattern of COG1109 is aMTKYQVCEBRHUJgpOLINxNumber of proteins in this genome belonging to this COG is 2","***** IPB001485 (Phosphoglucomutase and phosphomannomutase family) with a combined E-value of 1.2e-30. IPB001485A 20-31 IPB001485B 62-71 IPB001485C 116-130 IPB001485D 269-280 IPB001485E 499-520","Residues 6-141 are 53% similar to a (ISOMERASE PHOSPHOMANNOMUTASE PHOSPHORYLATION) protein domain (PD000667) which is seen in YHXB_BACSU.Residues 377-529 are 37% similar to a (PHOSPHOMANNOMUTASE PMM ISOMERASE) protein domain (PD006924) which is seen in YHXB_BACSU.Residues 170-359 are 39% similar to a (ISOMERASE PHOSPHORYLATION PHOSPHOMANNOMUTASE) protein domain (PD000778) which is seen in P72553_STRPN.","","Thu Jun 14 12:31:57 MDT 2001","","Thu Jun 14 12:31:57 MDT 2001","Thu Jun 14 12:31:57 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:31:57 MDT 2001","Thu Jun 14 12:31:57 MDT 2001","","","Tue May 22 17:29:26 MDT 2001","Thu Dec 4 15:46:59 2003","Thu Mar 22 14:52:42 MST 2001","Mon Jun 25 14:21:35 MDT 2001","Mon Jun 25 14:21:35 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 24-396 are 23% similar to PG0973, a predicted phosphomannomutase or phosphoglucomutase.","Mon Jun 25 14:21:35 MDT 2001","Thu Mar 22 14:52:42 MST 2001","-45% similar to PDB:1WQA Crystal Structure of Pyrococcus horikoshii phosphomannomutase/phosphoglucomutase complexed with Mg2+ (E_value = 2.6E_17);-39% similar to PDB:1TUO Crystal structure of putative phosphomannomutase from Thermus Thermophilus HB8 (E_value = 1.7E_16);-44% similar to PDB:1K35 Crystal Structure of Phosphomannomutase/Phosphoglucomutase from P.aeruginosa (E_value = 1.7E_11);-44% similar to PDB:1P5D Enzyme-ligand complex of P. aeruginosa PMM/PGM (E_value = 1.7E_11);-44% similar to PDB:1P5G Enzyme-ligand complex of P. aeruginosa PMM/PGM (E_value = 1.7E_11);","","","Residues 17 to 160 (E-value = 3.9e-61) place PG1754 in the PGM_PMM_I family which is described as Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I (PF02878)Residues 180 to 292 (E-value = 1.4e-05) place PG1754 in the PGM_PMM_II family which is described as Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II (PF02879)","Thu Dec 4 15:46:59 2003","34541601","","","","","","1","","","PG2010" "PG1755","2102052","2101276","777","ATGGAAGAGGTATCTCCCGACCACAGCACCATCAGTCGATTTCGTTCGGCACTGACAGAGTTGGGGCTCATGGACAAACTATTGGCGCAGTTTAACAAACAACTTTCCCGCCATCACATTTCGGTCAGGGAAGGGGTGCTTGTCGATGCAAGCCTTGTGGAGACGCCGCATAAACCCAACGGAAGCATTACGATTGAAGTCGCAGACGACAGAGAAGACAATCGGAGCGAGGAGGAAAAAGAGGCAGAGGAGGATTATCAAAAACAGGTTGTCCGTCAGCGTAAAGGGACGGATGAAGAAGCCCGTTGGGTTTACAAACAAAAGCGTTATCACTACGGATACAAAAAGCATTGTCTGACCAATGTTCAAGGCATTGTTCAAAAGGTGATAACGACTGCAGCGAACCGCAGTGACACGAAGGAGTTTATTGCGCTATTGCAGGGTGCAAACATACCTCAAGGCTCAGCCGTCTTCGCGGACAAAGGATATGCTTGCGGGGAAAATCGTTCCTACCTGCAAACCCATCACCTTCAAGACGGCATCATGCACAAGGCACAACGCAACAGGGCATTGACCGAGGAAGAGAAGCAACGAAACAAAGCAATCAGTCGGATACGGAGCACCATCGAACGCACCTTTGGCAGTATTCGCCGGTGGTTTCATGGCGGACGATGTCGATACCGGGGACTTGCCAAGACCCATACTCAAAACATTCTTGAAAGCATCGCCTTTAATTTATACAGAACCCCGGGGATAATTATGTCCTCATTTGTAGGA","10.10","10.52","29731","MEEVSPDHSTISRFRSALTELGLMDKLLAQFNKQLSRHHISVREGVLVDASLVETPHKPNGSITIEVADDREDNRSEEEKEAEEDYQKQVVRQRKGTDEEARWVYKQKRYHYGYKKHCLTNVQGIVQKVITTAANRSDTKEFIALLQGANIPQGSAVFADKGYACGENRSYLQTHHLQDGIMHKAQRNRALTEEEKQRNKAISRIRSTIERTFGSIRRWFHGGRCRYRGLAKTHTQNILESIAFNLYRTPGIIMSSFVG","2102051 2101275","Member of the IS5 family of elements. Reproduces the middle and C-terminal domains of full-length ISPg1 elements (e.g. PG1662).TIGR ID: PG2011","ISPg1 transposase fragment (IS1106-related transposase)","Cytoplasm","PG1755 is equivalent to the previously sequenced AJ130872 and AB015879 in GenBANK. Residues 6-248 are 34% similar to the IS1106 sequence of N.meningitidis (AE002488).","
InterPro
IPR002559
Domain
Transposase, IS4-like
PF01609\"[45-246]TTransposase_11


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 201-259 are identical to a (TRANSPOSASE ORF7 INSERTION SEQUENCE IS1126-LIKE GENE) protein domain (PD187845) which is seen in Q9ZA61_PORGI.Residues 55-200 are 86% similar to a (TRANSPOSASE PLASMID PROTEIN ELEMENT) protein domain (PD004652) which is seen in Q9ZA61_PORGI.Residues 8-54 are identical to a (TRANSPOSASE ORF7 INSERTION SEQUENCE) protein domain (PD187846) which is seen in Q9ZA61_PORGI.","","","","","","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","","","","Mon Jun 25 14:16:24 MDT 2001","Fri Feb 16 11:43:43 MST 2001","Thu Dec 21 14:47:48 MST 2000","Thu Dec 21 14:45:55 MST 2000","","Mon Jun 25 14:16:24 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1755 is virtually identical to PG1087, PG0763, PG1184, PG0686, PG0756, PG1798, PG1230, PG1919, PG0044, PG0689, PG1215, PG1665, PG0839, PG1895, all ISPg1 fragments that reproduce the middle and C-terminal residues of PG1267, PG0169, PG1050, PG1062, PG0740, PG0918, PG1662, PG1422, PG0420, PG0499, PG1099.Also, partial similarities to PG0732, PG0842, PG0883, PG1231, PG0730, PG1159, PG1608.","Fri Feb 16 11:43:43 MST 2001","Thu Jun 14 12:32:23 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 45 to 246 (E-value = 1.8e-40) place PG1755 in the Transposase_11 family which is described as Transposase DDE domain (PF01609)","Mon Jun 25 14:16:24 MDT 2001","","","Hanley,S.A., Aduse-Opoku,J. and Curtis,M.A.A 55-kilodalton immunodominant antigen of Porphyromonas gingivalisW50 has arisen via horizontal gene transferInfect. Immun. 67 (3), 1157-1171 (1999)Maley,J. and Roberts,I.S.Characterisation of IS1126 from Porphyromonas gingivalis W83: a new member of the IS4 family of insertion sequence elementsMicrobiol. Lett. 123 (1-2), 219-224 (1994)Shibata,Y., Hayakawa,M., Takiguchi,H., Shiroza,T. and Abiko,Y.Determination and characterization of the hemagglutinin-associatedshort motifs found in Porphyromonas gingivalis multiple geneproducts. J. Biol. Chem. 274 (8), 5012-5020 (1999)","Knight,A.I., Ni,H., Cartwright,K.A. and McFadden,J.J.Identification and characterization of a novel insertion sequence, IS1106, downstream of the porA gene in B15 Neisseria meningitidis.Mol. Microbiol. 6 (11), 1565-1573 (1992)","Wed Feb 14 11:17:02 MST 2001","Wed Feb 14 11:17:02 MST 2001","1","","18","PG2011" "PG1757","2104582","2104322","261","ATGTATATTATTTTAGTGTACGATATCGGTGAAAAGCGTGTTGGCAAAATGTTAAAACTGTGCAGAAAATATCTGAATTGGATTCAGAACTCTGTGTTCGAGGGGGAAATATCGGAAGTCAAGCTCTTAGAGCTGAAGAGCAGAGCAGCCGGAATTATGGAAAAAGAAGAAGATAGTCTGATCATATTTTCTTCCAGACAAGAACGTTGGTTGGAAAAAGAAATAATTGGCAAAGAGCGTTCTGCAACGGATATATTTCTA","6.70","-0.05","10253","MYIILVYDIGEKRVGKMLKLCRKYLNWIQNSVFEGEISEVKLLELKSRAAGIMEKEEDSLIIFSSRQERWLEKEIIGKERSATDIFL","2104587 2104321 [Shorter 2279 175 99]","TIGR ID: PG2013","conserved hypothetical protein","Cytoplasm","A few significant hits to conserved hypothetical proteins in gapped BLAST; e.g. residues 1-87 have 39% similarity to AE000879, M. thermautotrophicus conserved protein, residues 1-80 have 43% similarity to AE001817, T. maritima conserved hypothetical protein, residues 1-84 have 40% similarity to U67491, M. jannaschii conserved hypothetical protein.","
InterPro
IPR003799
Family
Protein of unknown function DUF196
PF02647\"[1-86]TDUF196
TIGR01573\"[1-86]Tcas2


","BeTs to 5 clades of COG1343COG name: Uncharacterized ACRFunctional Class: SThe phylogenetic pattern of COG1343 is Amt---v---r----------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 1-87 are 39% similar to a (PROTEIN CONSERVED MJ0386) protein domain (PD020032) which is seen in O27155_METTH.","","Thu Jun 14 12:32:34 MDT 2001","","Thu Jun 14 12:32:34 MDT 2001","Thu Jun 14 12:32:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:32:34 MDT 2001","Thu Jun 14 12:32:34 MDT 2001","","","Wed Mar 7 11:01:17 MST 2001","Mon Jun 25 14:06:27 MDT 2001","Wed Mar 7 11:01:17 MST 2001","","Mon Jun 25 14:06:27 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 7 11:01:17 MST 2001","-65% similar to PDB:2I0X Hypothetical protein PF1117 from Pyrococcus furiosus (E_value = 5.8E_13);","","","Residues 1 to 86 (E-value = 9.3e-21) place PG1757 in the DUF196 family which is described as Uncharacterized ACR, COG1343 (PF02647)","Mon Jun 25 14:06:27 MDT 2001","34541602","","","","","","1","","18","PG2013" "PG1758","2105598","2104585","1014","ATGAAAAAGACATATTATCTATTTAACCCCGGCGAATTGTCCCGAAAAGACAATACCATCCGCTTTGTCCCGATCCAAGAGGGAGAAAACGGACAGGAACAAGCAGGACAAGCCCGCTACATTCCCGTTGAAGGAATTAGCGATTTCTATGTGTTTGGCTCTTTGAGGGCCAATAGCAGCTTATACAATTTCCTTGGGAGCAATGACATCGCAGTCCATTTTTTCGATTATTACGAAAATTACACCGGTTCTTTTATGCCTCGCGACTTCTTGCTATCAGGAAAAATGCTCCTGGCACAGGCTTCGGCATATAAGAATAAGAAGAAACGATTGTTTCTGGCCAGAAAGTTTATTGAAGGTGCAGCCTCTAATATGCAGAAAAACTTAGCCTACTACAACAATCGGGGAAAAGATATGCAGCCGATGATGGAGCTAATCGACAAGTATTCATTGCGCCTGAAGGAAACGACAACGATAGAGGCTCTTATGGGTATCGAAGGTAATATCCGGCAAGCATACTATGATGCTTTTAACCTTATTATCGATCCTTTCGAAATGGGGGTGCGGAGCAAACAGCCTCCTCAAAATGAGGTAAATGCACTCATCTCTTTTGGGAATATGATGTGCTACACCTTATGCCTGAAGGCAATTCATCAAAGCCAACTGAATCCCACGATCAGCTTCCTACATACGCCCGGGGAGAGGCGATACTCTCTATGCTTGGATATATCGGAAGTGTTTAAGCCCATATTGGTAGATCGCACAATCTTCAAAGTCATGAACAAGAGAATAATACAGGCCAAACACTTCGACAAGCAACTCAATAAATGTATCCTAAATCCATCGGGAAAGAAGCTTTTCGTACAAGCCTTCGAAGAAAGACTTTCTGAAACGATTCGACATCGCAAGCTCAATCGTTCCGTCAGTTTCAGGCACCTGGTCAAGCTCGAATGCTACAAAATAGCCAAAGACATTCTTGGGATCGAAGAGTATCAACCCTTTAAGATGTATTGG","10.20","15.22","39388","MKKTYYLFNPGELSRKDNTIRFVPIQEGENGQEQAGQARYIPVEGISDFYVFGSLRANSSLYNFLGSNDIAVHFFDYYENYTGSFMPRDFLLSGKMLLAQASAYKNKKKRLFLARKFIEGAASNMQKNLAYYNNRGKDMQPMMELIDKYSLRLKETTTIEALMGIEGNIRQAYYDAFNLIIDPFEMGVRSKQPPQNEVNALISFGNMMCYTLCLKAIHQSQLNPTISFLHTPGERRYSLCLDISEVFKPILVDRTIFKVMNKRIIQAKHFDKQLNKCILNPSGKKLFVQAFEERLSETIRHRKLNRSVSFRHLVKLECYKIAKDILGIEEYQPFKMYW","2105597 2104584","TIGR ID: PG2014","conserved hypothetical protein","Cytoplasm","Residues 2-338 have 43% similarity to AE001107, A. fulgidus conserved hypothetical protein. Residues 2-338 have 40% similarity to AE000879, M. thermautotrophicus conserved protein.Residues 2-333 have 36% similarity to AP000005, P. horikoshii 322aa long hypothetical protein. ","
InterPro
IPR002729
Family
Protein of unknown function DUF48
PD008695\"[213-327]TDUF48
PF01867\"[3-329]TDUF48
TIGR00287\"[4-333]Tcas1


","BeTs to 7 clades of COG1518COG name: Uncharacterized ACRFunctional Class: SThe phylogenetic pattern of COG1518 is AmtK-qv---r----------Number of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","Residues 5-333 are 43% similar to a (PROTEIN CONSERVED LONG 322AA) protein domain (PD008695) which is seen in O30236_ARCFU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Mar 7 11:12:06 MST 2001","Wed Mar 7 11:12:06 MST 2001","Wed Mar 7 11:12:06 MST 2001","","Wed Mar 7 11:12:06 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 58-262 have 23% similarity to PG1730, a transposase 11.","Tue Jun 5 13:10:34 MDT 2001","Wed Mar 7 11:12:06 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 3 to 329 (E-value = 5.5e-118) place PG1758 in the DUF48 family which is described as Protein of unknown function DUF48 (PF01867)","Tue Jun 5 13:10:34 MDT 2001","34541603","","","","","","1","","18","PG2014" "PG1759","2106107","2105598","510","ATGAATACAATATCAGGCACGCACTTCAACTATCATCAGGTTTGTCGGAGAAAGCTATGGCTTTTCTCTGCAGGTATTACGATGGAGCATACATCTGATTTAGTATACGAGGGGAAATTGATCCATGAGACAACGTACCAGCAACGACCGGAGCGATACCAAGAATTGGAGTTGGACGGCATCAAGATAGACTTTTATGACGCAAAAAACAGAGTGGTTCACGAGGTCAAAAAGTCTAACAAAATATCGCCTGCCCACAGACTCCAACTACTCTATTACTTATATGTATTGGAGCGTAATGGGGTATTGGGAGCAACGGGGATATTGGAGTATCCGACTCTACGAAAAAAGGAAGAAGTGATTCTTTCTGACATAGATCGCGAACGGATCAGAGAGATCGAGCAGGAGATCCTACAGATTATCAGTCACGAGGATTGTCCTCCTGTTATCGACTCCGGGATCTGTAAAAACTGTAGCTATTACGAATTCTGCTTCTCGGGAGAAGAGCAA","5.90","-4.55","20017","MNTISGTHFNYHQVCRRKLWLFSAGITMEHTSDLVYEGKLIHETTYQQRPERYQELELDGIKIDFYDAKNRVVHEVKKSNKISPAHRLQLLYYLYVLERNGVLGATGILEYPTLRKKEEVILSDIDRERIREIEQEILQIISHEDCPPVIDSGICKNCSYYEFCFSGEEQ","2106106 2105597","TIGR ID: PG2015","conserved hypothetical protein","Cytoplasm","Residues 5-165 have 38% similarity to AE000686, A. aeolicus hypothetical protein.Residues 4-165 have 36% similarity to U67490, M. jannaschii conserved hypothetical protein.Residues 4-166 have 35% similarity to AE000879,M. thermautotrophicus conserved protein. ","
InterPro
IPR002785
Family
Protein of unknown function DUF83
PD012943\"[85-165]TDUF83
PF01930\"[85-166]TDUF83
InterPro
IPR013343
Family
CRISPR-associated protein Cas4
TIGR00372\"[4-166]Tcas4


","BeTs to 6 clades of COG1468COG name: Predicted metal-binding, possibly nucleic acid-binding protein similar to domains found in Superfamily I helicasesFunctional Class: RThe phylogenetic pattern of COG1468 is AmtK-qv--------------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 82-165 are 35% similar to a (PROTEIN CONSERVED LONG 83AA) protein domain (PD012943) which is seen in O66693_AQUAE.Residues 4-81 are 41% similar to a (PROTEIN CONSERVED MJ0377 162AA) protein domain (PD186903) which is seen in Y377_METJA.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Mar 7 12:24:22 MST 2001","Wed Mar 7 12:24:22 MST 2001","Wed Mar 7 12:24:22 MST 2001","","Wed Mar 7 12:24:22 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 7 12:24:22 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 85 to 166 (E-value = 1.5e-27) place PG1759 in the DUF83 family which is described as Domain of unknown function DUF83 (PF01930)","Wed Mar 7 12:24:22 MST 2001","34541604","","","","","","1","","18","PG2015" "PG1760","2108463","2106130","2334","TTGCAGAACAACAAGATGATCAATAAAGAATCGCCGATTTTAGCAAAGCCCTCCGGGATTACGTTGGACGTTCATGCCGAAAACGTAATTCAAGAGGGCGCATTGCTACTAAAAGGTCTTGGTTGCACAAAAGAAAAATACTTCCAAACCACTGCCAAACAGATTGTGCAGCGAGTGGAGTTAGCTTGTAAATACCATGACATAGGAAAAAGAAATAAGATATGGCAAGATGCTTGTAAAAAAGACTATAAGGCATATCTTATTTGGAAGAAAATTCATCCAAATAAATCTTTTGAAGATTACACTATAGAATGTAGAGAAGAGGCCGGTAAATTTTTACGACAAACACATGTGCGACATGAATTTTATTCAATAAAAGGGCTTCTCAATAACAACCCTCCACCCAATAACAACCCTCCATACTGGCTGAAGATTGCGATCGCTGCACATCATCGTAAGCTAAGCATGAAGCATGAAGAACGATGGCTAAGCAGTGATGAAGATATTTGCTCTGTGTGGAAGGATATCAGAAGATTGTCAAATTATTTCTTTGATGATCGGAATAGCGTTCTGTCCGATATTGCAATCAAGCAATATGAATTTGCAGGACCACGAAGCTTACTTCAATTAGCGGATCACAGAGCGAGTGCAAAGGAAGAGTCAAAATGCATCCCGGATCCGATTGCTTTTTCTTATACCTTTCCTGAAAAGTGGGAAAAAAGACCTGTTCAAAAGCTGGTAGAAAAGCATTGGAGAGACGAACTTCTTTTAGTACGAGCACCCACTGGTGCTGGAAAAACGGATGCAGCACTCTTGTGGGCTTCTCATCAAATCAAACACAGAAAAGCAGACCGCTTGATTATTGCTATGCCCACTCGTTTTACAACAAATGCACTAGCTCTAAGCGTATCTTCGACCCTTTCTTCTACAGGCCTGTATCATTCCAGTGCATGGACACAGAATTTCAGTAGCAAAATAGACAACGGGGAAATAGCTTTAGAGCAGGCAAGATACTATCATAACCAAGCTCGCTTACTACAGACCCCTATAACGGTATGCACCATAGATCATCTCCTCTCTTCATTGACTCTTTGTGACGAGGAACATCAGACCATTACTTTTGCACTGGCAAATGCATGTCTCGTTATTGATGAGGCAGATTTCTATGATCAATTTACACAAGCTAATATATTAGTATTACTAGAGGTTCTAAAATATTGGAAAGTGCCGATATTGCTGATGAGTGCCTCATTGCCAGACAATATAGTACAAGAATATCGAAAGATTGGTTATGATATTAAACACATACTTGAAGACACGTCAGACATAGAGAGAGCACGTTTTTCTTTAATAGAGAAACGTGATGTTTCAGAAATAAGTCAGATGCAAGACTTATTACAATTATGCCTTGATAGAGGTAGTGCGATTATTTTCGCAAATACTGTCGATAGAGCACAAGCATACTATCAATGGTTTTTGGAGAACGGTCATGAAGAAGAAGTAATACTTTATCATAGTAGGTATACTGAAACAGATAAAATTGAAAAGGAAGCACAATTGCTTCTTAGATTAGGGAGAAGCGCTTGGGATAATGATCGAGCAAATGGGGTTGCCATATTGACACAGATTGGAGAAATGAGTGTGAATATCAGTGCAGATATAATGATTTCTGATCTTTGTCCTATTGATCGATTGACCCAAAGATGCGGTCGTTTGTGTCGGTTTTCGAGAAAGATTGGAGACTTATATATAATCAGGCCTATGCGCGAGGGAAATTTATTTCCAGCCCCTTATTATCAAAATGTCGGCCCATCACAAAAATTAGAGCCAAATGATGCATTAATCCAAACAGATGAACTATTGGAAAAAGGGATGTATTCTGCAGCTAATTTAGTTCAATTGCTAAACAAAGTATATGCTAATCAGACAGTATTCTCCACAGAAGCGAGCCGTAATGCGGATCGCTTGAGAGAGATGTTCAAAGCGAATTGGTTGATAAATCCAATAGAGTACCTTGATGAAGAAATAGGTTCTACAAATTTTTGGCGAGCTCGAAACATAATGCCACGATGTAGAATATACATAAAAAGGCCATTACAATCTTTTCGGAATTACTCGGATTTTAGAAGATGGGAAACAGATGTAGCGATAGATATCCCTATTTATGTCATTAAAAAAGCTATGCGTATGAGCGATACCGTTTGCTCTCAAGTAAAAGTGTGTATTGGCAAAAATGATTATACATTGATTGTAATAAATGCCAAATGCTACAATAATGTTAGAGGACTGTTTTTCTCTGAATCAGTCCTCGAAGAACCTAACTTTGAGTTCTTG","7.70","5.85","90026","LQNNKMINKESPILAKPSGITLDVHAENVIQEGALLLKGLGCTKEKYFQTTAKQIVQRVELACKYHDIGKRNKIWQDACKKDYKAYLIWKKIHPNKSFEDYTIECREEAGKFLRQTHVRHEFYSIKGLLNNNPPPNNNPPYWLKIAIAAHHRKLSMKHEERWLSSDEDICSVWKDIRRLSNYFFDDRNSVLSDIAIKQYEFAGPRSLLQLADHRASAKEESKCIPDPIAFSYTFPEKWEKRPVQKLVEKHWRDELLLVRAPTGAGKTDAALLWASHQIKHRKADRLIIAMPTRFTTNALALSVSSTLSSTGLYHSSAWTQNFSSKIDNGEIALEQARYYHNQARLLQTPITVCTIDHLLSSLTLCDEEHQTITFALANACLVIDEADFYDQFTQANILVLLEVLKYWKVPILLMSASLPDNIVQEYRKIGYDIKHILEDTSDIERARFSLIEKRDVSEISQMQDLLQLCLDRGSAIIFANTVDRAQAYYQWFLENGHEEEVILYHSRYTETDKIEKEAQLLLRLGRSAWDNDRANGVAILTQIGEMSVNISADIMISDLCPIDRLTQRCGRLCRFSRKIGDLYIIRPMREGNLFPAPYYQNVGPSQKLEPNDALIQTDELLEKGMYSAANLVQLLNKVYANQTVFSTEASRNADRLREMFKANWLINPIEYLDEEIGSTNFWRARNIMPRCRIYIKRPLQSFRNYSDFRRWETDVAIDIPIYVIKKAMRMSDTVCSQVKVCIGKNDYTLIVINAKCYNNVRGLFFSESVLEEPNFEFL","2108552 2106129 [Bad Olap 2284 113 0]","TIGR ID: PG2016","conserved hypothetical protein","Cytoplasm","Residues 252-574 have 29% similarity to U67490, M. jannaschii conserved hypothetical protein.Residues 15-595 have 23% similarity to AE000686, putative protein A. aeolicus.Residues 235-662 have 25% similarity to AE001102 ,A. fulgidus putative ATP-dependent RNA helicase protein.","
InterPro
IPR003607
Domain
Metal-dependent phosphohydrolase, HD region
SM00471\"[18-279]THDc
InterPro
IPR006474
Domain
CRISPR-associated helicase Cas3, core
TIGR01587\"[255-611]Tcas3_core: CRISPR-associated helicase Cas3
InterPro
IPR006483
Domain
CRISPR-associated HD
TIGR01596\"[19-223]Tcas3_HD: CRISPR-associated HD domain protei
InterPro
IPR011545
Domain
DEAD/DEAH box helicase, N-terminal
PF00270\"[241-426]TDEAD
InterPro
IPR013212
Domain
Mad3/BUB1 homology region 1
SM00777\"[424-526]Tno description
InterPro
IPR014001
Domain
DEAD-like helicases, N-terminal
SM00487\"[236-446]TDEXDc
InterPro
IPR014021
Domain
Helicase superfamily 1 and 2 ATP-binding
PS51192\"[247-436]THELICASE_ATP_BIND_1
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[212-440]Tno description


","BeTs to 7 clades of COG1203COG name: Predicted helicasesFunctional Class: RThe phylogenetic pattern of COG1203 is AMtK-qv-e------------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 476-602 are 33% similar to a (PROTEIN HELICASE CONSERVED MJ0376) protein domain (PD103428) which is seen in O30165_ARCFU.Residues 464-583 are 33% similar to a (HELICASE PROTEIN POLYPROTEIN ATP-BINDING RNA RNA-BINDING) protein domain (PD000033) which is seen in O57915_PYRHO.Residues 252-433 are 27% similar to a (PROTEIN LONG CONSERVED 727AA) protein domain (PD011501) which is seen in Y376_METJA.","","Thu Jun 14 12:33:26 MDT 2001","","Thu Jun 14 12:33:26 MDT 2001","Thu Jun 14 12:33:26 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:33:26 MDT 2001","Thu Jun 14 12:33:26 MDT 2001","","","Wed Mar 7 12:45:00 MST 2001","Mon Jun 25 14:03:23 MDT 2001","Wed Mar 7 12:45:00 MST 2001","","Mon Jun 25 14:03:23 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 7 12:45:00 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 228 to 451 (E-value = 8.6e-06) place PG1760 in the DEAD family which is described as DEAD/DEAH box helicase (PF00270)","Mon Jun 25 14:03:23 MDT 2001","34541605","","","","","","1","","18","PG2016" "PG1761","2109454","2108441","1014","ATGGAAACAAAAAAAATTGCAGGAGTTTTGGTAACAATGGTTGCTCCTTTTGAAAATCACATGGCAAATGGCGGTGAAAAACTTTTCGGAAATGCGAGCTCAATTAAGCGCAGACCGGATGGGCGTGTGTACGTATCCGGACAAATGCAAAGACACGTATTGTTCTCTGCCATTGATAGATTGAATCATTTGGATAAGGCAAAGGGGACAACATTTGTATCTAATGGAGATGGCATTACAAACCTGATTGAGATTGACTTGCGTGCAGATCTGGGAGGGTTCATGCATACAAATAAAGGAGATTATTCTGATAGAAGAATTGCACCACTGTCCGTAACACCGGCCACGGCTCTTGATACAAGTTCTGTAGGAAGAGACCTCTTGGTGAGAATTCGCTTCGACAAAAGCTCTGATGCTAAAAATCAAGCATTAGCGACAAGAGAATACAGCGAACAGGATAAGATGAATATGAACTTCTTCCTTGACATAACATCTGTTGGTGTCAGCAAATCTTTTGTTTATAAAGATGGATTAAATTTAGGAACAAAGTACTTTAAACATATCACTGACGACGAGAAAAAGAGGAGGGTAAAGCTATTCTTAGAAGCAACTCGAATAATGAATGACTACGCAAACCAAGCTCGTAATGCAGTTTGTGGTGAGCCAGAAAAAGTATTGATCGTTTTTGATGATAGACTGAGCAGGAAAGCCTGTCGTTACTATACCGTAGGTGAAAAGGAGCAGGCAAACATTATAAAAGAACTTGATCAGTACCAAGTAAAATATTTTGTAGGGGATGATGCTTCAGATTATAGCGTAGCCGATGCTTATCGTGATGCGATGAATTACCTTGATAAGGCAACACTTGTCGATTTTGCAGAGGGCGAAGAGATAATGACTTTTGCAGAAGCCTTCGAGTGCAAGGAAAAAGAACCTCAAGAGAAAAAATCTAAAAAAGGGAAAGACAAGGCCACTTCTGCTCAGAATCTCTTTGCAGAACAACAAGATGATCAA","6.70","-0.91","38115","METKKIAGVLVTMVAPFENHMANGGEKLFGNASSIKRRPDGRVYVSGQMQRHVLFSAIDRLNHLDKAKGTTFVSNGDGITNLIEIDLRADLGGFMHTNKGDYSDRRIAPLSVTPATALDTSSVGRDLLVRIRFDKSSDAKNQALATREYSEQDKMNMNFFLDITSVGVSKSFVYKDGLNLGTKYFKHITDDEKKRRVKLFLEATRIMNDYANQARNAVCGEPEKVLIVFDDRLSRKACRYYTVGEKEQANIIKELDQYQVKYFVGDDASDYSVADAYRDAMNYLDKATLVDFAEGEEIMTFAEAFECKEKEPQEKKSKKGKDKATSAQNLFAEQQDDQ","2109453 2108440 [Shorter 2283 113 99]","TIGR ID: PG2017","hypothetical protein","Cytoplasm","This sequence corresponds to gi:34397923 in Genbank.","
InterPro
IPR010154
Family
CRISPR-associated negative autoregulator
TIGR01875\"[9-238]Tcas_MJ0381


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","Wed Mar 9 12:52:37 2005","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 9 12:52:37 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541606","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Wed Mar 9 12:52:37 2005","","1","","18","PG2017" "PG1762","2110964","2109468","1497","ATGAATACAAATCATTATTATATCCGATATGGATGTGCAATAACTCTGTATGATAATCATGTATCAGAGAGGGAAAGGCTAACTCCAAAAGAATTGAGATTCAGCATTGAAAAAGCGGTTTCCTCTTTTAGGATCCAAGCCCAGGAGCCTTTTTCCCCAGGATCAAAGGCCCGTTTCTCTTTTGTCAAAAGAAAAGATGGAAACACAAAGAACGGAATATTTCTCTCCCCACATATTGTCACGAAAGACATGCACGCCCAAAAAGTTTGGACAAAAGCATCTAAATTTCTTGAAATAGACTATTTAGGCAAAGACAATGAACGAGAAGGCTTACTCAAAAAAGACAATGTGAGCATGTCTAATATCCCGATATCCGGAGAATACCTGACTTTTGGCGAAAAAGATACTGGGCGAGGCTCTGCAAAAATATCTGTTGAAGAACAAACATATGGACTTATTACTACACTAACGCCCTTAAAGCCTGCATTGCAAGTCGGGAAAGATAATTTTTGCATCATTCCTGATATCCCACTCAATCAAATGGTCGATTTCATAGCTCTCTTTGACAAAATGCAAATCACTCATTTATCAGGAGAGGCAATGTTAGGAAACATAGATAATAAAGGAATTCCTCATCGTCCAAAAATCTTTCGAGGGAATTTCCCTAATTCACCCAAAAGTGACAGAATGGGAGCAATTGCGTTGTTAGGGGCTATAGGAGAATTTGCCAAGCATGCAGAATTTTCAACTCTTGCTCAAAAGGTGCTAGATTCATTGAAAGGATCAACCTTGTATCTGATTACATACGGCAATGCAATTCCATTTACGTTTCATCATTATATAATAGATCTAGCAAAAGAGGGGAAACTACACTCTATAGTGGATAGCTTATTTTATAGTCGGCTCTATAAAAAAGAAAAAAGAGTTTATGGGGATACCGATTATGACCGATTTGACTTTTTCACCAATCGTTTTTTACAATCATTCAATAAGGCAGCTTTCGATGACTTTTTTAGCTCCAGAGTAGAATATCCAAATCAAATCAAAATATTATTTCAAATGTTTTTTACCAAAATGGAGAAATTAAAAACTGACGTTATTGCATCTGCCCAGATATTGGGTAGTTGGCTCAACCAAGTTGCATATTTTGCAGCAAAAGAAGAAGCCGATTCAAGAATCTCTCCAGGAAATATCTTTGAAGAAAAAGCTAAATTTTTAGTGATGATGGAGAGCAGTATTTATGCAGCAAAGCGAGGAGATGCTCTCATTGCTCAAATCCTCATTTTAGCAGGAAGATTATCAAAGAATGAAGCTCCAAAAGAGGCATTGCTTTTCATGGAGAAGACCATTACCGGAGAAATAGATTTGTCTGTTGCAAAGAATCTTCTAATTGCATACATGCGTATTCGCAGAGAAGAGAAACAACGAGATTTGAACAGCGTTAAAAACGATGACGCAATACCATCTGATATAAACATTGATGACTTAACAAACACA","9.60","8.35","56671","MNTNHYYIRYGCAITLYDNHVSERERLTPKELRFSIEKAVSSFRIQAQEPFSPGSKARFSFVKRKDGNTKNGIFLSPHIVTKDMHAQKVWTKASKFLEIDYLGKDNEREGLLKKDNVSMSNIPISGEYLTFGEKDTGRGSAKISVEEQTYGLITTLTPLKPALQVGKDNFCIIPDIPLNQMVDFIALFDKMQITHLSGEAMLGNIDNKGIPHRPKIFRGNFPNSPKSDRMGAIALLGAIGEFAKHAEFSTLAQKVLDSLKGSTLYLITYGNAIPFTFHHYIIDLAKEGKLHSIVDSLFYSRLYKKEKRVYGDTDYDRFDFFTNRFLQSFNKAAFDDFFSSRVEYPNQIKILFQMFFTKMEKLKTDVIASAQILGSWLNQVAYFAAKEEADSRISPGNIFEEKAKFLVMMESSIYAAKRGDALIAQILILAGRLSKNEAPKEALLFMEKTITGEIDLSVAKNLLIAYMRIRREEKQRDLNSVKNDDAIPSDINIDDLTNT","2110963 2109467","TIGR ID: PG2018","hypothetical protein","Cytoplasm","No hit found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541607","","","","","","1","","18","PG2018" "PG1763","2111755","2110964","792","ATGGAACGCGGGCATCGGCAACTCAACCGGCATCGGCTTCGGTGCCATAAAATGAAATATAATATGAAAAATATAGATCTATCCATACTGGGAAAAGACCCGGATTTATCTGCGTCGATAAAGCTCCACATTGAACCACACGCTCCAATCTCTATGGTAAGCGAACTTCCGGGATCATACTACAAGGCTCTTTTGTACCCTGACAAGCATATTCTTTGTGGTTTGTTCGAGAATGTTTTGGGGTGGCATTTTAGTCGTAAAGACCGAGAAATAATAACAAAAGAGATAAAGAATATAAGAAAAAAAACAAAAAAAGGATACATCCCTCCCACTATCCGCTCGATCTTCATACCATTATTATCCGATTTCTTCGAGTTAGATAGTGTTCGCATTGTTTCCACCGATAGCCCGTTTTTTTATAACGATTTATGGAAGCGTGCTTTTAGGAGGAAAGATGCAGGGAAAATCCATTTCGGAGGCACTCAAAATATTGACTATACGCTAGTTATGGATAAATTTAGATTTATGTGTGAAAATGAGAGAACCTTGGAAACAGAAGAAAAGACAGATCAAAAAGAAGAAAAATTTTTACGAGAAAATATTGATAGAATATCTTTCTTCTACACCACTCCTACAAATAGGGAATATTTATTTTTTGAAGGAAATTATGAATGTGTAATTAAAATGGATCCTCAACTGGTTGATTTGCTATCAAAAACACTCCCCCAACAAAACATGGGGTATTTGGGCAACAGCGAAGGTTGGGTTACACTTTACCTTGAAGAAAAGTCA","9.10","6.75","31310","MERGHRQLNRHRLRCHKMKYNMKNIDLSILGKDPDLSASIKLHIEPHAPISMVSELPGSYYKALLYPDKHILCGLFENVLGWHFSRKDREIITKEIKNIRKKTKKGYIPPTIRSIFIPLLSDFFELDSVRIVSTDSPFFYNDLWKRAFRRKDAGKIHFGGTQNIDYTLVMDKFRFMCENERTLETEEKTDQKEEKFLRENIDRISFFYTTPTNREYLFFEGNYECVIKMDPQLVDLLSKTLPQQNMGYLGNSEGWVTLYLEEKS","2111802 2110963 [Bad Olap 2287 100 3]","TIGR ID: PG2019","hypothetical protein","Cytoplasm","This sequence corresponds to gi:34397925 in Genbank.","
InterPro
IPR000572
Domain
Oxidoreductase, molybdopterin binding
PS00559\"[147-184]?MOLYBDOPTERIN_EUK


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 12:33:45 MDT 2001","","Thu Jun 14 12:33:45 MDT 2001","Thu Jun 14 12:33:45 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:33:45 MDT 2001","Thu Jun 14 12:33:45 MDT 2001","","","","Wed Mar 9 12:54:50 2005","Thu Jun 14 12:33:45 MDT 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Jun 14 12:33:45 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jun 25 13:59:45 MDT 2001","34541608","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Wed Mar 9 12:54:50 2005","","1","","18","PG2019" "PG1764","2112366","2111704","663","ATGCGAATAGAACTATCCATCAAGGCAGACGATTCATTAGTCTCTTTTTCTCACCAACATTTGCTCGTCGGCACTCTTCAAAAATGGCTCGGAGAAAACGATATGCACGGCAAAAGTATCTCCTATTCATTTTCTCGTCTCAATGGGGGCAAACTCGTATCAGAACTCAACAGTATTCTCTTTGCCGATTGGGCCAATATGTTTGTCAGTGCTCATGATCCGGAGCTTATCAGACGTATGCTGGCAGGGATTCGTCAAGATCCCGAAATGTTCAAAAGCCTCTGCGTCCGGGAAGTGACCGTTATCGAAGATCCCGACATGACCGATCGCGAAATTTTCTTTCCTGCCAGCCCTATCCTGCTGAAGCGTTGGCGCGAGGACAATGGGTTCGACCATATAGTCTATACGGACGAAGCAGCCAATGCCCTACTGACAGAAAATCTTCGCAAAAAACTTCAGGCGGTAGGAATCGATGACCCTACTGCCACCGCATCCTTTGTCCCCGATCAGGGGAAAGCCAAGGTGATGCTTATCGATTACCGGGGAGTGAAAAACAAAGCCAGTTGGTGCCCTATCCGCATAATAGGGAATGCCGAGACCAAGCTGTTCGCATGGAACGCGGGCATCGGCAACTCAACCGGCATCGGCTTCGGTGCCATAAAA","6.70","-0.89","24684","MRIELSIKADDSLVSFSHQHLLVGTLQKWLGENDMHGKSISYSFSRLNGGKLVSELNSILFADWANMFVSAHDPELIRRMLAGIRQDPEMFKSLCVREVTVIEDPDMTDREIFFPASPILLKRWREDNGFDHIVYTDEAANALLTENLRKKLQAVGIDDPTATASFVPDQGKAKVMLIDYRGVKNKASWCPIRIIGNAETKLFAWNAGIGNSTGIGFGAIK","2112365 2111703 [Shorter 2286 100 96]","TIGR ID: PG2020","possible CRISPR-associated protein, TM1814 family","Cytoplasm","This sequence corresponds to gi:34397926 in Genbank.Its nearest neighbor in the NR database is gi:53713841 from Bacteroides fragilis YCH46.","
InterPro
IPR002743
Family
Protein of unknown function DUF57
PF01881\"[81-221]TDUF57
InterPro
IPR010156
Family
CRISPR-associated protein, Cas6
TIGR01877\"[34-221]Tcas_cas6


","BeTs to 5 clades of COG1583COG name: Uncharacterized ACRFunctional Class: SThe phylogenetic pattern of COG1583 is aMtK-Qv--------------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Mar 9 13:04:23 2005","Wed Mar 9 13:04:23 2005","Wed Mar 7 12:51:46 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 7 12:51:46 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 81 to 221 (E-value = 9.9e-05) place PG1764 in the DUF57 family which is described as Protein of unknown function DUF57 (PF01881)","Wed Mar 7 12:51:46 MST 2001","34541609","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","Jansen R, Embden JD, Gaastra W, Schouls LM.Identification of genes that are associated with DNA repeats in prokaryotes.Mol Microbiol. 2002 Mar;43(6):1565-75.PMID: 11952905","Wed Mar 9 13:05:25 2005","Wed Mar 9 13:05:25 2005","1","","","PG2020" "PG1764.1","2112438","2112746","309","ATGCTTATTTGCGAGGAAATCGGATATATAGCATCCATCGTTCCGAGGAATTTTGCGAAAACCGCACTGAAAATAGAAAAGGGGCGAGGGCGGGGTATAAAATACGAACCGAAAATGCTCCGATTGTGGTGCGTGTTTTCTGAAAAACCGGAACAAGAAGTTTTTCGTTGTGGCGCGAGAATTTTTTATTTCTCGAACCAAAACGAAAAAGTTTACGCGCCACGTTTTTCGGGGGCGCAGACACAGAGAAGTCGGTTCGTGAATGAACCGGGTATAACGAGGTGTGCCTTATCGCTTTATGTGAACCTT","","","11913","MLICEEIGYIASIVPRNFAKTALKIEKGRGRGIKYEPKMLRLWCVFSEKPEQEVFRCGARIFYFSNQNEKVYAPRFSGAQTQRSRFVNEPGITRCALSLYVNL","","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Wed Mar 7 12:56:45 MST 2001","","Wed Mar 7 12:56:45 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No significant paralogs found using local BLAST search.","Wed Mar 7 12:56:45 MST 2001","Wed Mar 7 12:56:45 MST 2001","-53% similar to PDB:1T5O Crystal structure of the translation initiation factor eIF-2B, subunit delta, from A. fulgidus (E_value = );-51% similar to PDB:1IGW Crystal Structure of the Isocitrate Lyase from the A219C mutant of Escherichia coli (E_value = );","","","No significant hits to the Pfam 11.0 database","Wed Mar 7 12:56:45 MST 2001","","","","","","","1","","","" "PG1765","2114945","2113017","1929","ATGAAGACGTTGTTCGAACGAGGAGAGCTTTTGTTTCGGAAAAGAAGCGGTTTCTGCTACGTAATAGGAGTATTTGTTCTATTTCTGCTCTATTTCCTCTTTCAGAAAGTCATATTCCTGCTCGTGTACTCTGGCCGGCTTGCCGGGATAGGCACTTCCAGCGGAGATATTGCGGCCATTTTCCTGTATGGACTCAGGCACGATGCAGCCGTAGCAGCTTACCTGACAGTACTTCCTCTATTGTTCGCCGGCATCAATGCCATTGCCGGCTGGGGAGAAAAGAAAATCGGGCGAATACTGAGACAAATTCTTAAGCATTATTACACACTCATAAGCTTCTTTGTCGGGCTGATCTACACGGCGGATCTGATGCTTTTCGGGTACTGGGGTTTCCGCCTCGATGCCACACCACTTTTTTATCTACGCCAGCCACAGGAAGCCATGGCCAGTGTTACAGCACCGCAACTCTTGATCGGTCTCTTGATCACGGTTGTATTCGTTTGCATACCGGCTTTCGTTCTACATCGATTTCACCGTAGGTACTTTCCGACAAAAGTAGTTGCACATCCGCATATCGCCGGCATATGGAAACCGGTTGTGGGTGGAGCTTTCCTATTCCTCCTGATCAGAGGAGGAGTGGGAGTGGCTACGCTCAATGTCGGATCCGTCTTTCACAGTCCCAAGCAGCTACACAATCAGGCTGCCGTCAATCCTGTTTTCAGTTTTCTATATACCTGCATGCATAGCGAAGAAGACTATTCGAACTATCAATTTTTGTCAGAAGAAGACTGTATCAAAGCTTTCGAGCAACTTCGTTTATACGGTTGTTCGGATGGAAGCGAAGTAAGAGAATCGGCTTCTGATAGCACAGAGAGGATATTGAGTACAGATAGGCCGAACATTGTACTGATCCTGCTGGAGAGCTTCTCGGCTAATGCCGTGGGATGCCTCGGTGGTACCCCGGGGCATACACCCTGCATTGATTCGCTGGCACAGAATGGGATTCTCTTTAGCCAAGCCTTCGCAAGCAGCTTTCGAACAGACAGAGGCACAGTAGCCACGCTCAGTGGCTACCCTTCGCAGCCGAATTCATCCATCATCAAATACCCCAATAAGGTGCGCAACCTGCCGGGCATAGCTGCTTCATTGCGCACCGTCGGCTATAGCACCCACCACCTGTACGGAGGAGATGCTGACTTTACAAATGTCCGTAGCTACCTATACGGCACTGGATATGACGAGGTAACGGACGTTAGCAGCTTTCCGTTCAAAACGAGGTTGAGCAAATGGGGTACGCCGGATCATATCAGTTTCCCACGCCTATTGGACGATTGTCGGCGATTGGAGAAAGAAAAGAAACCTTACTTCTACAGCTTCCTCACACTTTCCAGCCATGAACCATTCGATGTCCCTTCTCAGCATCATCCTGATCCGTATCTCAATAGCGTCTTCTATACGGACAGCTGCTTTGGCGACTATATACGTGGTATGCAGCAGTCTCCTCAATGGAAGAATACACTCATCATAGCCGTTTCCGATCATGGTTATCCCTATCCTGCCGACCAAGCTATGCCCGATCAGCCCGGCCGCTATGGGATTGTGATGCTGTGGGCAGGAGGAGCCATCTTACGACCGATACGCTTCGAAGAGGTAGTGTCGCAGTCCGATTTGCCTGCCACGCTGCTGGCCCAATTAGGGCTTACTCATGATGAATTCGTATTCTCCAAAGATGTTTTTCGGAGAAACAGCCCCCATTTCGCTTATTTCTCCTTCCCCGGTTTAGTAGGCTTGGCGACTTCTGAAGGAACTACCATCTACGATTTTGCCGGCGACAAGATTGTCTATGGACACGAAGCCCCACTTGCCGACCAACGCGCTATAGCGGCCAAAGTAATGCTGCAATCGGTGATGAAGGATATGCTATCGCGT","7.90","6.41","71734","MKTLFERGELLFRKRSGFCYVIGVFVLFLLYFLFQKVIFLLVYSGRLAGIGTSSGDIAAIFLYGLRHDAAVAAYLTVLPLLFAGINAIAGWGEKKIGRILRQILKHYYTLISFFVGLIYTADLMLFGYWGFRLDATPLFYLRQPQEAMASVTAPQLLIGLLITVVFVCIPAFVLHRFHRRYFPTKVVAHPHIAGIWKPVVGGAFLFLLIRGGVGVATLNVGSVFHSPKQLHNQAAVNPVFSFLYTCMHSEEDYSNYQFLSEEDCIKAFEQLRLYGCSDGSEVRESASDSTERILSTDRPNIVLILLESFSANAVGCLGGTPGHTPCIDSLAQNGILFSQAFASSFRTDRGTVATLSGYPSQPNSSIIKYPNKVRNLPGIAASLRTVGYSTHHLYGGDADFTNVRSYLYGTGYDEVTDVSSFPFKTRLSKWGTPDHISFPRLLDDCRRLEKEKKPYFYSFLTLSSHEPFDVPSQHHPDPYLNSVFYTDSCFGDYIRGMQQSPQWKNTLIIAVSDHGYPYPADQAMPDQPGRYGIVMLWAGGAILRPIRFEEVVSQSDLPATLLAQLGLTHDEFVFSKDVFRRNSPHFAYFSFPGLVGLATSEGTTIYDFAGDKIVYGHEAPLADQRAIAAKVMLQSVMKDMLSR","2114944 2113016","TIGR ID: PG2021","conserved hypothetical protein","Inner membrane, Cytoplasm","Residues 60-591 have 25% similarity to AE006205, P. multocida hypothetical protein.Residues 60-568 have 26% similarity to AE004408, V. cholerae conserved hypothetical protein.Residues 60-591 have 25% similarity to U32804, H. influenzae hypothetical protein.This sequence is similar to BT1853.","
InterPro
IPR000917
Domain
Sulfatase
PF00884\"[297-582]TSulfatase
InterPro
IPR001952
Family
Alkaline phosphatase
G3DSA:3.40.720.10\"[297-571]TAlk_phosphtse
InterPro
IPR012160
Family
Membrane sulphatase, HI1246-related
PIRSF005091\"[11-638]TMmb_sulf_HI1246
noIPR
unintegrated
unintegrated
PTHR10342\"[286-563]TPTHR10342
SSF53649\"[297-642]TSSF53649


","BeTs to 4 clades of COG1368COG name: Phosphoglycerol transferase MdoB and related proteins, alkaline phosphatase superfamilyFunctional Class: MThe phylogenetic pattern of COG1368 is ------v-eB-Huj-------Number of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","Residues 300-514 are 32% similar to a (TRANSMEMBRANE PHOSPHOGLYCEROL TRANSFERASE) protein domain (PD126137) which is seen in YC46_HAEIN.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Mar 7 13:14:53 MST 2001","Mon Dec 8 16:39:48 2003","Wed Mar 7 13:03:39 MST 2001","","Wed Mar 7 13:03:39 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 29-635 have 24% similarity to PG1369, a conserved hypothetical protein. ","Tue Jun 5 13:12:16 MDT 2001","Wed Mar 7 13:03:39 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 297 to 619 (E-value = 3.5e-28) place PG1765 in the Sulfatase family which is described as Sulfatase (PF00884)","Tue Jun 5 13:12:16 MDT 2001","34541610","","","","","","1","","","PG2021" "PG1766","2117492","2114952","2541","ATGAAAGAAAACGAAAAGCCGACAGCTGCTGCCGGAACCGTAACCACCACCGATAAGACAAAGCCTGATTGGCGCAAAATCCTACCTTATGCTGCGGTCGTACTCCTTTTCATAGCCCTCGCTTTGGCCTATTTCTATCCCGCCTCATTCGACGGGCGTGTACTGTTCCAGGGCGACGTAGCGGGAGCCAGCGGTACGGCGCAGGACGTACGCGATTGGGAGGCACAGACAGGAGAACACTCCTATTGGACCAACAGTCTCTTCGGGGGGATGCCTATGTACCAGATTTCGCCAAGCTATCCCTCTACCCATACGCTCCAAACCATACAGGATGTTCTGACCCTGCGCAAGCCTTTCTATCTATTAGGCACCTATGCCTGGATGCTTTTTGCCATGATGGGAGGGTTCTTTCTTTTCCTTAGATCGCTTCGAATCAGGATTTTGCCGGCAGTCATAGGCTCCATCGCATGGGCCTTTTCTTCCTACTTCCTGATTCTGATTATGGCCGGACATATATGGAAGCTGACAGCTATGTGTTTTATTCCTCCTACTCTTGCCGGTATGATCTGGATCTACAATGGGAGGTGGTTGGCAGGCGGTAGCGTGATGGCTTTTTTCACGGCTTTGCAAGTCTTGGCTAATCATGTACAGATGAGCTATTACTTCCTGTTCGTCATGTTTTTCATGGTGTTGGCTTTCTTGGCAGAAGCCATTCGAACAAAACGAATCCGACACTTCTTCCTTTCCTCGGCAGTAGTCGTCATAGCAGGTCTGGTGGGTATAGCTGTGAATAGTACCAACCTCTTCCACACCTACCAATACGGCAAAGAGACCATGCGTGGAGGTAGCGAACTGACGCTCAAGCAGAGCGGAGCACCCACGGATCAAGTGACGCATGAGAATAAAAGCGGACTGGACAAGGCCTATATCACACAATGGAGTTATGGTATAGGTGAGACTTGGTCGCTCCTTATCCCCGATATTAAAGGAGGATCCTCCGGTTACTTGGGTTATGACGAAAAGGTGATGGAAACCGTGAATCCATCCTATGCTCAGGCGATAGCTCGTATGAATCGCTACTGGGGAGACCAACCATTCACGGCAGGGCCTGTATATGTAGGAGCTTTCGTTCTCTTTCTCTTTGTCTTGGGTTGTTTTATCGTCAAAGGGCCTGTCAAGTGGGCTTTGCTGGCAGCCACCATCCTGTCTATTCTACTCTCTTGGGGGCATAATATGATGTGGCTGACGAGCTTCTTCATCGACCATTTTCCTCTGTACGATAAGTTTCGCACGGTATCGTCCATCCTTGTGATCGCCGAATTTACGATTCCGGCTTTGGCCGTTATGGCTTTGGTGGAAATAATCAAAGAGGGAAAACCCCTCCTTAAGCGCGAACGTACTGCTTGGGTTGCAGCTACACTTCTGACCCTTGGGGCATCGCTTCTTTTTGCCCTTGTGCCCTCCCTGCTCGGTTTGCTGAGCGGGCAGGAGGAAGCTATGTTCCAAGAAGCAGCAGGTCACCCTGAAGCAGCAGCTATCAAGACTACCCTCGTGAATGTTCGCTCGGGCATATTAGCTTCTGATGCATGGCGTAGCTTCGGCATATTGGTTGTATGCGGCATCCTGTTGTGGCTCTTCTTTCAAAAGAGACTCAAAGCAACTGCTCTACTGGTATCTTTGGCCGTGATCACGCTGGTCGATCTATGGACGGTGGACAAACGCTATCTGAACGATGAGCATTTCATAGATCCCGAACTCGTCAGCCAACGTGCTGCACCTCTGACAGAAGCAGACAAGCAAATCCTTGCAGACAAGTCGCTCGGGTACCGCGTTCTGAATCTCACCGTGGACACTTATAATGATGCCACCACGAGCCGCTGGCACCGGAGCATCGGTGGATACCACGCTGCCAAACTCCAGCGTTATCAGGATTTGATCGAACACCAACTGAGCAAAGGCAATCGCGAAGTAGTCAATATGCTCAACACCAAGTATATCATAGTCCCCGGAGAAAACAACCGGCCCTCTCCCATGTCGAATCCGGACGCTTACGGTCCGGCATGGCCGGCCGGCAGTATCCGCTGGGTAGGAAATGCCAATGAGGAAATGATGGCTTTGGACAGCAATCGACTGACGCGTGACATCGCTGTCGTGGACGAACGATTCTCTTCCGAATCGCTCAAAAGGCTACCGGCTCTGACTGATAGCACTGCCTCTATAAGTCTGAAAGAATATGCTCCGAACAGACAGGTGTACGAAGCTGTGAGCACACAACCCATGCTGGGCATATTTTCCGAGATATACTATCCTCATGGCTGGACAGCGACTATCGATAACCAAGCTGTACCGATCATTCGTGCCAACTATATACTCCGTGCACTGGAGGTTCCTGCCGGGCGTCATAAAATAGAATTTCGTTTTGATCCGAAGAGCCTGCACATCACAGAAGCTATAGCCAAGACAGCTCTGGCACTACTCCTGCTGGGGATTGTGTGGGCGATAGCACGCCCCTTCTTCTTGCGCGGAAAGCGTCCGACAGCC","9.80","13.99","94453","MKENEKPTAAAGTVTTTDKTKPDWRKILPYAAVVLLFIALALAYFYPASFDGRVLFQGDVAGASGTAQDVRDWEAQTGEHSYWTNSLFGGMPMYQISPSYPSTHTLQTIQDVLTLRKPFYLLGTYAWMLFAMMGGFFLFLRSLRIRILPAVIGSIAWAFSSYFLILIMAGHIWKLTAMCFIPPTLAGMIWIYNGRWLAGGSVMAFFTALQVLANHVQMSYYFLFVMFFMVLAFLAEAIRTKRIRHFFLSSAVVVIAGLVGIAVNSTNLFHTYQYGKETMRGGSELTLKQSGAPTDQVTHENKSGLDKAYITQWSYGIGETWSLLIPDIKGGSSGYLGYDEKVMETVNPSYAQAIARMNRYWGDQPFTAGPVYVGAFVLFLFVLGCFIVKGPVKWALLAATILSILLSWGHNMMWLTSFFIDHFPLYDKFRTVSSILVIAEFTIPALAVMALVEIIKEGKPLLKRERTAWVAATLLTLGASLLFALVPSLLGLLSGQEEAMFQEAAGHPEAAAIKTTLVNVRSGILASDAWRSFGILVVCGILLWLFFQKRLKATALLVSLAVITLVDLWTVDKRYLNDEHFIDPELVSQRAAPLTEADKQILADKSLGYRVLNLTVDTYNDATTSRWHRSIGGYHAAKLQRYQDLIEHQLSKGNREVVNMLNTKYIIVPGENNRPSPMSNPDAYGPAWPAGSIRWVGNANEEMMALDSNRLTRDIAVVDERFSSESLKRLPALTDSTASISLKEYAPNRQVYEAVSTQPMLGIFSEIYYPHGWTATIDNQAVPIIRANYILRALEVPAGRHKIEFRFDPKSLHITEAIAKTALALLLLGIVWAIARPFFLRGKRPTA","2117491 2114951","TIGR ID: PG2022","conserved hypothetical protein","Inner membrane, Cytoplasm","This sequence corresponds to gi:34397929 in Genbank.Its nearest neighbor in the NR database is gi:29348205 from Bacteroides thetaiotaomicron VPI-5482.","
noIPR
unintegrated
unintegrated
signalp\"[1-43]?signal-peptide
tmhmm\"[27-47]?\"[120-140]?\"[145-165]?\"[171-191]?\"[196-214]?\"[218-238]?\"[247-269]?\"[368-388]?\"[398-418]?\"[432-452]?\"[467-487]?\"[528-548]?\"[553-571]?\"[822-840]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Fri Dec 19 10:09:14 2003","Wed Mar 9 14:13:38 2005","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Dec 19 10:09:14 2003","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541611","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Wed Mar 9 14:13:38 2005","","1","","","PG2022" "PG1767","2118629","2117661","969","ATGAAGAAAGAAGAACTACGATTGATTTTTATGGGAACGGCCGATTTTGCTGTTCCGGCACTCCGAGCTTTGGTCGAAAACGGATACCAAGTAAAAGCTGTGGTCACTATGCCGGACAAGCCTATGGGTCGAGGACATAAGGTAAGTCCCAGTATGGTCAAACTATACGCACAGGAATTGGGTCTGCCTATTCTCCAGCCGGACAATCTGAACGAGGAATCTTTTCTCGATGAACTACGGACTTATCAGCCGCACTTGCAAATCGTAGTGGCTTTCCGTATGCTTCCTCGCTCCGTATGGCAAATGCCCCCCATGGGAACAATCAATCTGCATGGCTCTCTGCTGCCCATGTATCGAGGAGCAGCCCCTATCAACCACGCGATACGCCATGGCGATACGGAAACGGGAGTTACCACCTTCCGCCTCCGGCATGAGATAGATACGGGTGAAGTACTGCTGCAAGAGAAGTTGCCTATAGGACATGAAGAGACTTTCGGCGAATTGTACGAACGTATGGCTACTCTCGGTGCATCCGTATTGGTGCACACAGTGGACTTGTTTCTCGAAGGAGAACCCGTCTCCATACCTCAGGAGCAACTTCCGGGCTATGTTGATGCTCGACCGGCTCCGAAGATTTTCAAAGACGACTGCCGTATCGATTGGGACAAACCGGCTGAAGAGGTACACAATTTCATCCGCAGCATATCGCCTGCTCCTACAGCTTGGACCAAGCTTCATCGTCCAAGGATGGAGTCCATCGTGCTGAAAATATACCGTACCCAAGTGATAGAACGAGAACCGCGACACAGAGGCCGATTCGGCTCCATCATATGGGACAAGAAAAACCTCGACGTGATGACACGCAAAGGGGTCATACGTATACTCTCGCTCCAAATGCCCGGCAAGAAACAAATGGATGCCGCCTCTTTCCTCAATGGTTTCGCTTTGTCCTCAGATATGTATATAGAA","7.90","2.62","36729","MKKEELRLIFMGTADFAVPALRALVENGYQVKAVVTMPDKPMGRGHKVSPSMVKLYAQELGLPILQPDNLNEESFLDELRTYQPHLQIVVAFRMLPRSVWQMPPMGTINLHGSLLPMYRGAAPINHAIRHGDTETGVTTFRLRHEIDTGEVLLQEKLPIGHEETFGELYERMATLGASVLVHTVDLFLEGEPVSIPQEQLPGYVDARPAPKIFKDDCRIDWDKPAEEVHNFIRSISPAPTAWTKLHRPRMESIVLKIYRTQVIEREPRHRGRFGSIIWDKKNLDVMTRKGVIRILSLQMPGKKQMDAASFLNGFALSSDMYIE","2118628 2117660","This enzyme catalyzes the addition of theformyl moiety to met-tRNA:10-formyltetrahydrofolate + L-met-tRNA ->N-formylmethionyly-tRNA + tetrahydrofolate. InE.coli, the enzyme is a monomer (a 3Dstructure is available). From Prosite PDOC00319: Escherichia coli methionyl-tRNAformyltransferase (EC 2.1.2.9) (gene fmt) isthe enzyme responsible for modifying the freeamino group of the aminoacyl moiety ofmethionyl-tRMA(fMet). The central part of fmtseems to be evolutionary related to GART'sactive site region.TIGR ID: PG2023","methionyl-tRNA formyltransferase","Cytoplasm","This sequence is similar to CT530 and BT3945.Residues 24-124 are 97% similar to a previously sequenced P.gingivalis protein GenBank, AAA51298.Numerous significant hits to methionyl-tRNA formyltransferase in gapped BLAST; e.g. residues 6-313 are 36% similar to dbj|BAB06227.1| methionyl-tRNA formyltransferase of Bacillus halodurans, residues 4-312 are 38% similar to gb|AAG58409.1|AE005556_2 0-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase of Escherichia coli O157:H7, residues 7-314 are 39% similar to gb|AAC07851.1| methionyl-tRNA formyltransferase of Aquifex aeolicus.","
InterPro
IPR002376
Domain
Formyl transferase, N-terminal
G3DSA:3.40.50.170\"[3-199]TFormyl_transf_N
PF00551\"[6-184]TFormyl_trans_N
SSF53328\"[6-227]Tformyl_transf
InterPro
IPR005793
Domain
Formyl transferase, C-terminal
PF02911\"[213-315]TFormyl_trans_C
InterPro
IPR005794
Family
Methionyl-tRNA formyltransferase
TIGR00460\"[6-319]Tfmt
InterPro
IPR011034
Domain
Formyl transferase, C-terminal-like
SSF50486\"[212-312]TFMT_C_like
InterPro
IPR015518
Family
Methionine tRNA Formyltransferase-like
PTHR11138\"[70-316]TMet_tRNA_Form_TA-like
noIPR
unintegrated
unintegrated
G3DSA:3.10.25.10\"[214-314]TG3DSA:3.10.25.10


","BeTs to 13 clades of COG0223COG name: Methionyl-tRNA formyltransferaseFunctional Class: JThe phylogenetic pattern of COG0223 is ----yQvcEbRhujgpolinxNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 30-124 are 96% similar to a (TRANSFERASE PROTEIN FORMYLTRANSFERASE BIOSYNTHESIS) protein domain (PD001209) which is seen in PRTH_PORGI.Residues 209-314 are 31% similar to a (TRANSFERASE FORMYLTRANSFERASE PROTEIN METHIONYL-TRNA) protein domain (PD004966) which is seen in FMT_CHLPN.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Sat Jan 3 10:30:25 2004","Wed Mar 22 14:38:45 MST 2000","Sat Jan 3 10:30:25 2004","Thu Mar 22 15:12:23 MST 2001","","Thu Mar 22 15:12:23 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 22 15:12:23 MST 2001","-58% similar to PDB:1FMT METHIONYL-TRNAFMET FORMYLTRANSFERASE FROM ESCHERICHIA COLI (E_value = 1.2E_53);-58% similar to PDB:2FMT METHIONYL-TRNAFMET FORMYLTRANSFERASE COMPLEXED WITH FORMYL-METHIONYL-TRNAFMET (E_value = 1.2E_53);-50% similar to PDB:1YRW Crystal Structure of E.coli ArnA Transformylase Domain (E_value = 7.8E_29);-50% similar to PDB:1Z7E Crystal structure of full length ArnA (E_value = 7.8E_29);-50% similar to PDB:2BLN N-TERMINAL FORMYLTRANSFERASE DOMAIN OF ARNA IN COMPLEX WITH N-5-FORMYLTETRAHYDROFOLATE AND UMP (E_value = 7.8E_29);","","","Residues 6 to 184 (E-value = 6e-39) place PG1767 in the Formyl_trans_N family which is described as Formyl transferase (PF00551)Residues 213 to 315 (E-value = 9.3e-20) place PG1767 in the Formyl_trans_C family which is described as Formyl transferase, C-terminal domain (PF02911)","Sat Jan 3 10:30:25 2004","34541612","","","","","","1","","","PG2023" "PG1768","2124296","2119179","5118","ATGAAAAACTTGAACAAGTTTGTTTCGATTGCTCTTTGCTCTTCCTTATTAGGAGGAATGGCATTTGCGCAGCAGACAGAGTTGGGACGCAATCCGAATGTGAGATTGCTCGAATCCACTCAGCAATCGGTGACAAAGGTTCAGTTCCGTATGGACAACCTCAAGTTCACCGAAGTTCAAACCCCTAAGGGAATGGCACAAGTGCCGACCTATACAGAAGGGGTTAATCTTTCTGAAAAAGGGATGCCTACGCTTCCCATTCTATCACGCTCTTTGGCGGTTTCAGACACTCGTGAGATGAAGGTAGAGGTTGTTTCCTCAAAGTTCATCGAAAAGAAAAATGTCCTGATTGCACCCTCCAAGGGCATGATTATGCGTAACGAAGATCCGAAAAAGATCCCTTACGTTTATGGAAAGAGCTACTCGCAAAACAAATTCTTCCCGGGAGAGATCGCCACGCTTGATGATCCTTTTATCCTTCGTGATGTGCGTGGACAGGTTGTAAACTTTGCGCCTTTGCAGTATAACCCTGTGACAAAGACGTTGCGCATCTATACGGAAATCACTGTGGCAGTGAGCGAAACTTCGGAGCAAGGCAAAAATATTCTGAACAAGAAAGGTACATTTGCCGGCTTTGAAGACACATACAAGCGCATGTTCATGAACTACGAGCCAGGGCGTTACACACCGGTAGAGGAAAAACAAAATGGTCGTATGATCGTCATCGTAGCCAAAAAGTATGAGGGAGATATTAAAGATTTCGTTGATTGGAAAAACCAACGCGGTCTCCGTACCGAGGTGAAAGTGGCAGAAGATATTGCTTCTCCCGTTACAGCTAATGCTATTCAGCAATTCGTTAAGCAAGAATACGAGAAAGAAGGTAATGATTTGACCTATGTTCTTTTGATTGGCGATCACAAAGATATTCCTGCCAAAATTACTCCGGGGATCAAATCCGACCAGGTATATGGACAAATAGTAGGTAATGACCACTACAACGAAGTCTTCATCGGTCGTTTCTCATGTGAGAGCAAAGAGGATCTGAAGACACAAATCGATCGGACTATTCACTATGAGCGCAATATAACCACGGAAGACAAATGGCTCGGTCAGGCTCTTTGTATTGCTTCGGCTGAAGGAGGCCCATCCGCAGACAATGGTGAAAGTGATATCCAGCATGAGAATGTAATCGCCAATCTGCTTACCCAGTATGGTTATACCAAGATTATCAAATGTTATGATCCGGGAGTAACTCCTAAAAACATTATTGATGCTTTCAACGGAGGAATCTCGTTGGCCAACTATACGGGCCACGGTAGCGAAACAGCTTGGGGTACGTCTCACTTCGGCACCACTCATGTGAAGCAGCTTACCAACAGCAACCAGCTACCGTTTATTTTCGACGTAGCTTGTGTGAATGGCGATTTCCTATTCAGCATGCCTTGTTTCGCAGAAGCATTGATGCGTGCACAAAAAGATGGTAAGCCGACAGGTACTGTTGCTATCATAGCGTCTACGATCAACCAGTCTTGGGCTTCTCCTATGCGCGGGCAGGATGAGATGAACGAAATTCTGTGCGAAAAACACCCGAACAACATCAAGCGTACTTTCGGTGGTGTCACCATGAACGGTATGTTTGCTATGGTGGAAAAGTATAAAAAGGATGGTGAGAAGATGCTCGACACATGGACTGTATTCGGCGACCCCTCGCTGCTCGTTCGTACACTTGTCCCGACCAAAATGCAGGTTACGGCTCCGGCTCAGATTAATTTGACGGATGCTTCAGTCAACGTATCTTGCGATTATAATGGTGCTATTGCTACCATTTCAGCCAATGGAAAGATGTTCGGTTCTGCAGTTGTCGAAAATGGAACAGCTACAATCAATCTGACAGGTCTGACAAATGAAAGCACGCTTACCCTTACAGTAGTTGGTTACAACAAAGAGACGGTTATTAAGACCATCAACACTAATGGTGAGCCTAACCCCTACCAGCCTGTTTCCAACTTGACTGCTACAACGCAGGGTCAGAAAGTAACGCTCAAGTGGGATGCACCGAGCACGAAAACCAATGCAACCACTAATACCGCTCGCAGCGTGGATGGCATACGAGAACTGGTTCTTCTGTCAGTCAGCGATGCCCCCGAACTTCTTCGCAGCGGTCAGGCCGAGATTGTTCTTGAAGCTCACGATGTTTGGAATGATGGATCCGGTTATCAGATTCTTTTGGATGCAGACCATGATCAATATGGACAGGTTATACCCAGTGATACCCATACTCTTTGGCCGAACTGTAGTGTCCCGGCCAATCTGTTCGCTCCGTTCGAATATACGGTTCCGGAAAATGCAGATCCTTCTTGTTCCCCTACCAATATGATAATGGATGGTACTGCATCCGTTAATATACCGGCCGGAACTTATGACTTTGCAATTGCTGCTCCTCAAGCAAATGCAAAGATTTGGATTGCCGGACAAGGACCGACGAAAGAAGATGATTATGTATTTGAAGCCGGTAAAAAATACCATTTCCTTATGAAGAAGATGGGTAGCGGTGATGGAACTGAATTGACTATAAGCGAAGGTGGTGGAAGCGATTACACCTATACTGTCTATCGTGACGGCACGAAGATCAAGGAAGGTCTGACGGCTACGACATTCGAAGAAGACGGTGTAGCTGCAGGCAATCATGAGTATTGCGTGGAAGTTAAGTACACAGCCGGCGTATCTCCGAAGGTATGTAAAGACGTTACGGTAGAAGGATCCAATGAATTTGCTCCTGTACAGAACCTGACCGGTAGTGCAGTCGGCCAGAAAGTAACGCTTAAGTGGGATGCACCTAATGGTACCCCGAATCCAAATCCAAATCCGAATCCAAATCCGAATCCCGGAACAACTACACTTTCCGAATCATTCGAAAATGGTATTCCTGCCTCATGGAAGACGATCGATGCAGACGGTGACGGGCATGGCTGGAAGCCTGGAAATGCTCCCGGAATCGCTGGCTACAATAGCAATGGTTGTGTATATTCAGAGTCATTCGGTCTTGGTGGTATAGGAGTTCTTACCCCTGACAACTATCTGATAACACCGGCATTGGATTTGCCTAACGGAGGTAAGTTGACTTTCTGGGTATGCGCACAGGATGCTAATTATGCATCCGAGCACTATGCGGTGTATGCATCTTCGACCGGTAACGATGCATCCAACTTCACGAATGCTTTGTTGGAAGAGACGATTACGGCAAAAGGTGTTCGCTCGCCGGAAGCTATTCGTGGTCGTATACAGGGTACTTGGCGCCAGAAGACGGTAGACCTTCCCGCAGGTACGAAATATGTTGCTTTCCGTCACTTCCAAAGCACGGATATGTTCTACATCGACCTTGATGAGGTTGAGATCAAGGCCAATGGCAAGCGCGCAGACTTCACGGAAACGTTCGAGTCTTCTACTCATGGAGAGGCACCAGCGGAATGGACTACTATCGATGCCGATGGCGATGGTCAGGGTTGGCTCTGTCTGTCTTCCGGACAATTGGACTGGCTGACAGCTCATGGCGGCACCAACGTAGTAAGCTCTTTCTCATGGAATGGAATGGCTTTGAATCCTGATAACTATCTCATCTCAAAGGATGTTACAGGCGCAACGAAGGTAAAGTACTACTATGCAGTCAACGACGGTTTTCCCGGGGATCACTATGCGGTGATGATCTCCAAGACGGGCACGAACGCCGGAGACTTCACGGTTGTTTTCGAAGAAACGCCTAACGGAATAAATAAGGGCGGAGCAAGATTCGGTCTTTCCACGGAAGCCGATGGCGCCAAACCTCAAAGTGTATGGATCGAGCGTACGGTAGATTTGCCTGCGGGCACGAAGTATGTTGCTTTCCGTCACTACAATTGCTCGGATTTGAACTACATTCTTTTGGATGATATTCAGTTCACCATGGGTGGCAGCCCCACCCCGACCGATTATACCTACACGGTGTATCGTGATGGTACGAAGATCAAGGAAGGTTTGACCGAAACGACCTTCGAAGAAGACGGCGTAGCTACGGGCAATCATGAGTATTGCGTGGAAGTGAAGTACACAGCCGGCGTATCTCCGAAGAAATGTGTAAACGTAACTGTTAATTCGACACAGTTCAATCCTGTAAAGAACCTGAAGGCACAACCGGATGGCGGCGACGTGGTTCTCAAGTGGGAAGCCCCGAGCGCAAAGAAGACAGAAGGTTCTCGTGAAGTAAAACGGATCGGAGACGGTCTTTTCGTTACGATCGAACCTGCAAACGATGTACGTGCCAACGAAGCCAAGGTTGTGCTCGCAGCAGACAACGTATGGGGAGACAATACGGGTTACCAGTTCTTGTTGGATGCCGATCACAATACATTCGGAAGTGTCATTCCGGCAACCGGTCCTCTCTTTACCGGAACAGCTTCTTCCGATCTTTACAGTGCGAACTTCGAGTATTTGATCCCGGCCAATGCCGATCCTGTTGTTACTACACAGAATATTATCGTTACAGGACAGGGTGAAGTTGTAATCCCCGGTGGTGTTTACGACTATTGCATTACGAACCCGGAACCTGCATCCGGAAAGATGTGGATCGCAGGAGATGGAGGCAACCAGCCTGCACGTTATGACGATTTCACATTCGAAGCAGGCAAGAAGTACACCTTCACGATGCGTCGCGCCGGAATGGGAGATGGAACTGATATGGAAGTCGAAGACGATTCACCTGCAAGCTATACCTATACAGTCTATCGTGACGGCACGAAGATCAAGGAAGGTCTGACCGAAACGACCTACCGCGATGCAGGAATGAGTGCACAATCTCATGAGTATTGCGTGGAAGTTAAGTACACAGCCGGCGTATCTCCGAAGGTTTGTGTGGATTATATTCCTGACGGAGTGGCAGACGTAACGGCTCAGAAGCCTTACACGCTGACAGTTGTAGGAAAGACGATCACGGTAACTTGCCAAGGCGAAGCTATGATCTACGACATGAACGGTCGTCGTCTGGCAGCCGGTCGCAACACGGTTGTTTACACGGCTCAGGGCGGCTACTATGCAGTTATGGTTGTCGTTGACGGCAAGTCTTACGTAGAGAAACTCGCTATCAAG","4.80","-49.31","185683","MKNLNKFVSIALCSSLLGGMAFAQQTELGRNPNVRLLESTQQSVTKVQFRMDNLKFTEVQTPKGMAQVPTYTEGVNLSEKGMPTLPILSRSLAVSDTREMKVEVVSSKFIEKKNVLIAPSKGMIMRNEDPKKIPYVYGKSYSQNKFFPGEIATLDDPFILRDVRGQVVNFAPLQYNPVTKTLRIYTEITVAVSETSEQGKNILNKKGTFAGFEDTYKRMFMNYEPGRYTPVEEKQNGRMIVIVAKKYEGDIKDFVDWKNQRGLRTEVKVAEDIASPVTANAIQQFVKQEYEKEGNDLTYVLLIGDHKDIPAKITPGIKSDQVYGQIVGNDHYNEVFIGRFSCESKEDLKTQIDRTIHYERNITTEDKWLGQALCIASAEGGPSADNGESDIQHENVIANLLTQYGYTKIIKCYDPGVTPKNIIDAFNGGISLANYTGHGSETAWGTSHFGTTHVKQLTNSNQLPFIFDVACVNGDFLFSMPCFAEALMRAQKDGKPTGTVAIIASTINQSWASPMRGQDEMNEILCEKHPNNIKRTFGGVTMNGMFAMVEKYKKDGEKMLDTWTVFGDPSLLVRTLVPTKMQVTAPAQINLTDASVNVSCDYNGAIATISANGKMFGSAVVENGTATINLTGLTNESTLTLTVVGYNKETVIKTINTNGEPNPYQPVSNLTATTQGQKVTLKWDAPSTKTNATTNTARSVDGIRELVLLSVSDAPELLRSGQAEIVLEAHDVWNDGSGYQILLDADHDQYGQVIPSDTHTLWPNCSVPANLFAPFEYTVPENADPSCSPTNMIMDGTASVNIPAGTYDFAIAAPQANAKIWIAGQGPTKEDDYVFEAGKKYHFLMKKMGSGDGTELTISEGGGSDYTYTVYRDGTKIKEGLTATTFEEDGVAAGNHEYCVEVKYTAGVSPKVCKDVTVEGSNEFAPVQNLTGSAVGQKVTLKWDAPNGTPNPNPNPNPNPNPGTTTLSESFENGIPASWKTIDADGDGHGWKPGNAPGIAGYNSNGCVYSESFGLGGIGVLTPDNYLITPALDLPNGGKLTFWVCAQDANYASEHYAVYASSTGNDASNFTNALLEETITAKGVRSPEAIRGRIQGTWRQKTVDLPAGTKYVAFRHFQSTDMFYIDLDEVEIKANGKRADFTETFESSTHGEAPAEWTTIDADGDGQGWLCLSSGQLDWLTAHGGTNVVSSFSWNGMALNPDNYLISKDVTGATKVKYYYAVNDGFPGDHYAVMISKTGTNAGDFTVVFEETPNGINKGGARFGLSTEADGAKPQSVWIERTVDLPAGTKYVAFRHYNCSDLNYILLDDIQFTMGGSPTPTDYTYTVYRDGTKIKEGLTETTFEEDGVATGNHEYCVEVKYTAGVSPKKCVNVTVNSTQFNPVKNLKAQPDGGDVVLKWEAPSAKKTEGSREVKRIGDGLFVTIEPANDVRANEAKVVLAADNVWGDNTGYQFLLDADHNTFGSVIPATGPLFTGTASSDLYSANFEYLIPANADPVVTTQNIIVTGQGEVVIPGGVYDYCITNPEPASGKMWIAGDGGNQPARYDDFTFEAGKKYTFTMRRAGMGDGTDMEVEDDSPASYTYTVYRDGTKIKEGLTETTYRDAGMSAQSHEYCVEVKYTAGVSPKVCVDYIPDGVADVTAQKPYTLTVVGKTITVTCQGEAMIYDMNGRRLAAGRNTVVYTAQGGYYAVMVVVDGKSYVEKLAIK","2124295 2119178","Gingipain R1 is an Arg-X thiol protease thought to be responsible for protein degradation associated with peridontal disease. This polyprotein also shows hemagglutinin/adhesin activity. For the R2 sequence, see PG0461.At 1706 amino acids, PG1768 is closer to Rgp-1 from strain HG66 than to PrtP from strain W12.Amino acid residues 228-719 constitute the alpha region or RIA (surface molecule) from the PrpR1 study; a slight variant is RIB, a lipid-modified form. Residues 719-1262 constitute the RI chain upon post-translational processing at arginines. Surface RI consists of the alpha chain (53 kDa) and a beta chain taken from the C-terminal half of the polyprotein. RIA and RIB appear as monomers. The study of PrtR suggests that RIA is a 45 kDa proteinase, and that the beta and gamma (C-terminal) regions comprise 44 kDa, 15 kDa, 17 kDa and 27 kDa adhesins (Lamont and Jenkinson, MMBR 62:no.4).Gene nomenclature and strains (from Lamont and Jenkinson):rgp-1 (HG66), rgpA(ATCC 33277), prpRI (W50), prtR (W50), prtH (W83), agp (381), cpgR (ATCC 33277).Veith et al. 2002 identified this protein by two-dimensional gel electrophoresis and peptide mass fingerprinting of outer membranes prepared from strain W50. They present the following results: The C-terminal domain of RgpA together with PG1838, PG1570 and PG0461 migrate as vertical streaks on 2D-PAGE at a MW 13-42 kDa higher than that calculated from their gene sequences. The electrophoretic behaviour of these proteins together with their immunoreactivity with a monoclonal antibody that recognises LPS is consistent with a modification that could anchor the proteins to the outer membrane. The proposed LPS-attachment site is in the conserved C-terminal 50 amino acid residues of each of these proteins. Based on signal peptide sequence comparisons to PG0626, PG0627, PG1592, PG1840, PG0836, PG0023, PG1893, the mature N-terminus of this protein is predicted to be pyroglutamate.RgpA, Kgp and HagA were identified as fully processed domains. The N- and C-termini of many of these domains were identified by mass spectrometry and or N-terminal sequence analysis. It was found that gaps existed between many of the domains. The proposed domain structure of RgpA is as follows: RgpA signal peptide (1-23), RgpA pro-domain (24-227), RgpA45 (228-688), RgpA44 (720-1081), RgpA15 (1139-1257), RgpA17 (1274-1404), RgpA27 (1432-1706).TIGR ID: PG2024","arginine-specific cysteine proteinase; gingipain R1","Extracellular, Periplasm","PG1768 corresponds to the previously sequenced U15282 from strain HG66, X82680 from strain W50 and L26341 from W50. See also A55426, D26470, X85186. No other significant hits in gapped BLAST except to paralogs.See also D26470 from strain 381: residues 1-941 are virtually identical to residues 1-941 of D26470. Residues 1082-1702 are 95% similar to residues 32-653 of L27483 from strain W83. Residues 219-645 are 95% similar to residues 1-422 of X85186 from strain ATCC 33277. See Z29570.The published hagE sequence (AF026946 corresponds to the N-terminal residues of PG1768: residues 1-1687 are 99% similar to residues 20-1706 of PG1768.","
InterPro
IPR000977
Family
ATP-dependent DNA ligase
PS00697\"[1131-1139]?DNA_LIGASE_A1
InterPro
IPR001769
Family
Peptidase C25, gingipain
PF01364\"[228-576]TPeptidase_C25
InterPro
IPR005536
Domain
Peptidase C25, C-terminal ig-like region
PF03785\"[578-657]TPeptidase_C25_C
InterPro
IPR011628
Domain
Cleaved adhesin
PF07675\"[964-1132]T\"[1141-1312]TCleaved_Adhesin
InterPro
IPR012600
Domain
Propetide, peptidase C25
PF08126\"[24-227]TPropeptide_C25
InterPro
IPR013783
Domain
Immunoglobulin-like fold
G3DSA:2.60.40.10\"[577-661]TIg-like_fold
InterPro
IPR014756
Domain
Immunoglobulin E-set
SSF81296\"[578-658]TIg_E-set
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.10390\"[228-344]TG3DSA:3.40.50.10390
G3DSA:3.40.50.1460\"[345-575]TG3DSA:3.40.50.1460
SSF52129\"[228-577]TSSF52129


","No hit to the COGs database.","***** PF01364 (Peptidase family C25) with a combined E-value of 5.6e-282. PF01364A 46-95 PF01364B 243-250 PF01364C 258-311 PF01364D 371-408 PF01364E 489-539 PF01364F 1610-1663 PF01364G 1664-1702 PF01364B 1403-1410 PF01364C 699-752","Residues 1082-1114 are 87% similar to a (PROTEASE PRTH EC 3.4.22.-) protein domain (PD125301) which is seen in PRTH_PORGI.Residues 1369-1635 are identical to a (PROTEASE PRECURSOR SIGNAL THIOL HEMAGGLUTININ REPEAT) protein domain (PD002028) which is seen in Q51838_PORGI.Residues 1636-1706 are identical to a (PROTEASE PRECURSOR THIOL SIGNAL) protein domain (PD004371) which is seen in P72194_PORGI.Residues 1-218 are identical to a (PROTEASE CYSTEINE PRECURSOR THIOL) protein domain (PD005390) which is seen in CPG1_PORGI.Residues 1375-1408 are 85% similar to a (PROTEASE PRECURSOR SIGNAL HEMAGGLUTININ THIOL REPEAT) protein domain (PD001858) which is seen in P72194_PORGI.Residues 437-645 are identical to a (PROTEASE PROTEINASE CYSTEINE PRECURSOR) protein domain (PD007636) which is seen in CPG1_PORGI.Residues 1577-1626 are 76% similar to a (PROTEASE THIOL REPEAT PRECURSOR) protein domain (PD013956) which is seen in Q51839_PORGI.Residues 219-436 are identical to a (PROTEASE THIOL CYSTEINE PRECURSOR) protein domain (PD005006) which is seen in Q51838_PORGI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Thu Feb 7 11:15:23 2002","Thu May 17 16:55:51 MDT 2001","Thu Mar 29 16:22:04 MST 2001","Tue Dec 5 11:51:27 MST 2000","Thu Mar 29 16:22:04 MST 2001","Thu Mar 29 16:22:04 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1768 is paralogously related to PG0461, a predicted Arg-X protease. Residues 2-659 are 84% similar to residues 3-662 of PG0461. Further similarities (53-54%) are seen to PG1164, PG1602 and PG1605. For fragmentary similarities, see PG1606, PG1922, PG0022, PG0376. ","Tue Jun 5 13:13:05 MDT 2001","Thu Mar 29 16:22:04 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 228 to 576 (E-value = 1.4e-280) place PG1768 in the Peptidase_C25 family which is described as Peptidase family C25 (PF01364)Residues 578 to 657 (E-value = 4.1e-54) place PG1768 in the Peptidase_C25_C family which is described as Peptidase family C25, C terminal ig-like domain (PF03785)","Sun Jun 24 14:14:01 MDT 2001","34541613","Thu Feb 7 17:10:34 2002","See Proteases/Hemagglutinin Analysis
Veith,P., Talbo,G., Slakeski,N., Dashper,S., Moore,C.,Paolini,R., Reynolds,E., Major outer membrane proteins and proteolytic processing of RgpA, and Kgp of Porphyromonas gingivalis W50, Biochem J (2002) 363, 105-115,PMID: 11903053.Pavloff,N., Potempa,J., Pike,R.N., Prochazka,V., Kiefer,M.C.,Travis,J. and Barr,P.J.Molecular cloning and structural characterization of theArg-gingipain proteinase of Porphyromonas gingivalis. Biosynthesis as a proteinase-adhesin polyprotein.J. Biol. Chem. 270, 1007-1010 (1995)PMID: 7836351.Slakeski,N., Bhogal,P.S., O'Brien-Simpson,N.M. and Reynolds,E.C.Characterization of a second cell-associated Arg-specific cysteine proteinase of Porphyromonas gingivalis and identification of an adhesin-binding motif involved in association of the prtR and prtK proteinases and adhesins into large complexes. Microbiology 144 (Pt 6), 1583-1592 (1998).PMID: 9639929.Gharbia,S.E. and Shah,H.N.Molecular analysis of surface-associated enzymes of Porphyromonasgingivalis Clin Infect Dis 1995 Jun;20 Suppl 2:S160-6,PMID: 7548541.Aduse-Opoku,J., Muir,J., Slaney,J.M., Rangarajan,M. and Curtis,M.A.Characterization, genetic analysis, and expression of a proteaseantigen (PrpRI) of Porphyromonas gingivalis W50Infect. Immun. 63 (12), 4744-4754 (1995),PMID: 7591131.Rangarajan,M., Aduse-Opoku,J., Slaney,J.M., Young,K.A. andCurtis,M.A.The prpR1 and the prR2 arginine-specific protease genes ofPorphyromonas gingivalis W50 produce five biochemically distinctenzymesMol Microbiol. 1997 Mar;23(5):955-65. PubMed: Kirszbaum,L., Sotiropoulos,C., Jackson,C., Cleal,S., Slakeski,N.and Reynolds,E.C.Complete nucleotide sequence of a gene prtR of Porphyromonasgingivalis W50 encoding a 132 kDa protein that contains anarginine-specific thiol endopeptidase domain and a haemagglutinindomain.Biochem. Biophys. Res. Commun. 207 (1), 424-431 (1995)PMID: 7857299.Pike,R., McGraw,W., Potempa,J. and Travis,J.Lysine- and arginine-specific proteinases from Porphyromonasgingivalis. Isolation, characterization, and evidence for theexistence of complexes with hemagglutininsJ. Biol. Chem. 269 (1), 406-411 (1994)PMID: 8276827.Okamoto,K., Misumi,Y., Kadowaki,T., Yoneda,M., Yamamoto,K. andIkehara,Y.Structural characterization of argingipain, a novelarginine-specific cysteine proteinase as a major periodontalpathogenic factor from Porphyromonas gingivalis.Arch. Biochem. Biophys. 316 (2), 917-925 (1995)PMID: 7864651.Fletcher,H.M., Schenkein,H.A. and Macrina,F.L.Cloning and characterization of a new protease gene (prtH) fromPorphyromonas gingivalis.Infect. Immun. 62, 4279-4286 (1994)PMID: 7927685.","Lamont,R.J. and Jenkinson, H.F.Life below the gum line: pathogenic mechanisms of Porphyromonas gingivalis.Microbiol. Mol. Biol. Reviews 62: 1244-1263 (1998)Progulske-Fox,A. and Lantz,M.S.Analysis of the prtP gene encoding porphypain, a cysteineproteinase of Porphyromonas gingivalisJ. Bacteriol. 178 (10), 2734-2741 (1996)","Thu Apr 17 09:40:43 2003","Thu Dec 7 12:21:40 MST 2000","1","","","PG2024" "PG1769","2125075","2125605","531","ATGAAAATATATCTGATGCGCCACACCTCGGTGCTGTTCAATGGCAATGAGCACTGCTACGGATTCACCGATGTGGACGTTCGAGACACCTTCGAAGAGGAGGCTGCGGCGGCTTGTGCCCGTCTCAAAGGCCTCGATCCCGAGGCGGTCTTTACCAGCCCTCTGCAGCGTGCGGCCAAGTTGGCGGCCTTTTGCGGCTATCCCGATGCCATCCGAGACGACCGGCTGAAGGAGATGAACTTCGGCGACTGGGAAGGCAAACCCTGGGAAGAAATTCTGGACACGACAGACATAGAAGCATTTTTCCGCCGCTACATAGACGAACCCGTATCCGGCGGCGAATCGCAACGAGAGCAGTTCGAACGCGTGCGGGACTTCATCCTGGAAAAGAAAGCTGCCGGTTATCGCTCCATCCTGATCTTCTGCCATGGCGGGGTGATCAATTGTGCCCGTACGCTGGTCGGACAATGCACGCTGGAGAGTGCCTTTGCCTCACTCCCTCCCTTCGGCTCTCTGACCGAATTGATCTTA","4.70","-8.55","19972","MKIYLMRHTSVLFNGNEHCYGFTDVDVRDTFEEEAAAACARLKGLDPEAVFTSPLQRAAKLAAFCGYPDAIRDDRLKEMNFGDWEGKPWEEILDTTDIEAFFRRYIDEPVSGGESQREQFERVRDFILEKKAAGYRSILIFCHGGVINCARTLVGQCTLESAFASLPPFGSLTELIL","2124969 2125604","TIGR ID: PG2026","phosphoglycerate mutase","Cytoplasm","Numerous weak hits to phosphoglycerate mutase in gapped BLAST; e.g. residues 1-149 are 27% similar to gb|AAC07750.1| phosphoglycerate mutase of Aquifex aeolicus, residues 1-155 are 28% similar to gb|AAF09860.1|AE001889_6 phosphoglycerate mutase, putative of Deinococcus radiodurans, residues 3-152 are 27% similar to pir||G69831 phosphoglycerate mutase (glycolysis) homolog of Bacillus subtilis.","
InterPro
IPR013078
Domain
Phosphoglycerate mutase
PF00300\"[2-150]TPGAM
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.1240\"[2-177]TG3DSA:3.40.50.1240
PIRSF001490\"[1-177]TDPGAM
PTHR23029\"[1-176]TPTHR23029
SSF53254\"[2-177]TSSF53254


","BeTs to 6 clades of COG0406COG name: Phosphoglycerate mutase/fructose-2,6-bisphosphataseFunctional Class: GThe phylogenetic pattern of COG0406 is ----YQvCEbR----------Number of proteins in this genome belonging to this COG is 3","***** IPB001345 (Phosphoglycerate mutase family) with a combined E-value of 2.5e-13. IPB001345A 3-35 IPB001345B 50-62 IPB001345C 67-99 IPB001345D 115-160","No significant hit to the ProDom database.","","Thu Jun 14 12:34:04 MDT 2001","","Thu Jun 14 12:34:04 MDT 2001","Thu Jun 14 12:34:04 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:34:04 MDT 2001","Thu Jun 14 12:34:04 MDT 2001","","","Wed Mar 7 13:28:00 MST 2001","Mon Jun 25 13:57:51 MDT 2001","Wed Mar 7 13:28:00 MST 2001","Mon Jun 25 13:57:51 MDT 2001","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1-177 have 44% similarity to PG0634, probable hosphoglycerate mutase.","Mon Jun 25 13:57:51 MDT 2001","Wed Mar 7 13:28:00 MST 2001","-50% similar to PDB:1V37 Crystal structure of phosphoglycerate mutase from Thermus thermophilus HB8 (E_value = 5.0E_11);-50% similar to PDB:1V7Q Crystal structure of phosphoglycerate mutase from Thermus thermophilus HB8 (E_value = 5.0E_11);-50% similar to PDB:2HIA Crystal structure of TTHB049 from Thermus thermophilus HB8 (E_value = 5.0E_11);","","","Residues 1 to 167 (E-value = 1.6e-08) place PG1769 in the PGAM family which is described as Phosphoglycerate mutase family (PF00300)","Mon Jun 25 13:57:51 MDT 2001","34541614","","","","","","1","","","PG2026" "PG1770","2125637","2126158","522","ATGATACCCACGGGAGGCGTTGGTATTAAACAAATCGAACCGAATATTGTCATACGAGAAGCTATGAAGGAACCATCTCACGAAAAAACTCGATCCGACAAGAGGCAAGGGTTGAGGCCCCGTTTCTATCTCTATTGGTTGGGGATCCTGATTTTCGCAGCTGCTTTCACCGGCATGCTACTGGAGGATTTCAACTCGGAAGGCAGACCTGCCGGTTTGGAGCTTTTCTTCCATATCAGTGGAGCCGTGGCATTTTGTTTCGCTCTGGCAGAGCAGAGTGCCGTCTTTATCGGCCACAAACATGGGCGTATCGATCGGGCCACGGCTATGCGTTATGCAGGCTTCATGGACAGAAACGGCTCGTGGAGTGCCTTGCTGATATGTCTGACTTTCGTTGCCTTCGGGCTGATGAAAATCGGACACGAAGGGACTAAGGTCTGGGATTCTGTACTCGGATGGCTCTTTGTGGTGGGCTTCGGCTATGCCGTTATCCGTTTTATCCTCAATCGTTTTCGCCGGAAA","10.70","9.10","19621","MIPTGGVGIKQIEPNIVIREAMKEPSHEKTRSDKRQGLRPRFYLYWLGILIFAAAFTGMLLEDFNSEGRPAGLELFFHISGAVAFCFALAEQSAVFIGHKHGRIDRATAMRYAGFMDRNGSWSALLICLTFVAFGLMKIGHEGTKVWDSVLGWLFVVGFGYAVIRFILNRFRRK","2125636 2126157 [Shorter 2294 67 99]","TIGR ID: PG2027","hypothetical protein","Inner membrane, Cytoplasm","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
tmhmm\"[42-62]?\"[76-98]?\"[119-141]?\"[147-167]?transmembrane_regions


","BeTs to 3 clades of COG0477COG name: PermeasesFunctional Class: G,E,RThe phylogenetic pattern of COG0477 is AMTKYQVCEBRHUJGPo-INXNumber of proteins in this genome belonging to this COG is 5","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Mar 7 13:37:00 MST 2001","","Wed Mar 7 13:37:00 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 7 13:37:00 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Mar 7 13:37:00 MST 2001","34541615","","","","","","1","","","PG2027" "PG1771","2126170","2126676","507","ATGCCCAAGACCAATGTGGCGCGCCTTCTGGATGCGGCGCATATAACGTACGAACTGATCCCCTACGAGCCGGACGAGAGAGACCTCTCGGCCGTCCATGTGGCAGAGCAGCTGGGCGAGGATGTCAGGCAGGTGTTCAAGACGCTGGTATTGCGAGGCAATAAGACCGGACTGCTCGTCTGCATCGTACCGGGCAATGAGGAGGTAGACCTCAAGCTGGCGGCACGAGCATCGGACAACAAAAGCGTGGAAATGATCAGACAGAGCGAGCTTCTTCCGCTCACGGGGTATATCCGTGGCGGCTGTTCGCCCATCGGGATGAAAAAGGCTTATCCATCCTATATCCATCATACTTGCATGGTATTCCCTTATATATATGTCAGCGCGGGTGTGCGAGGCTTACAGCTTCGGATAGCACCGGCCGATCTCTTGGCATACACGGGAGCCGAGCCGGCTTGCCTCTGTGGTGCTACGACAGAAGAAAAATCAATCATAAATCAAACCCTA","6.50","-1.28","18486","MPKTNVARLLDAAHITYELIPYEPDERDLSAVHVAEQLGEDVRQVFKTLVLRGNKTGLLVCIVPGNEEVDLKLAARASDNKSVEMIRQSELLPLTGYIRGGCSPIGMKKAYPSYIHHTCMVFPYIYVSAGVRGLQLRIAPADLLAYTGAEPACLCGATTEEKSIINQTL","2126091 2126675 [Bad Olap 2293 67 0]","TIGR ID: PG2028","probable transcription regulator","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 1-143 have 45% similarity to Z99110, B subtilis transcription regulation homolog, residues 3-150 have 46% similarity to L23802, E. faecalis regulatory protein, residues 9-145 have 38% similarity to AE004778, P. aeruginosa conserved hypothetical protein.","
InterPro
IPR004369
Family
Conserved hypothetical protein 11
TIGR00011\"[4-155]TYbaK_EbsC
InterPro
IPR007214
Domain
YbaK/prolyl-tRNA synthetase associated region
PF04073\"[12-154]TYbaK
noIPR
unintegrated
unintegrated
G3DSA:3.90.960.10\"[3-157]TG3DSA:3.90.960.10
SSF55826\"[4-157]TSSF55826


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 4-150 are 46% similar to a (PROTEIN TRANSCRIPTION REGULATION EBSC) protein domain (PD009524) which is seen in EBSC_ENTFA.","","Thu Jun 14 12:34:23 MDT 2001","","Thu Jun 14 12:34:23 MDT 2001","Thu Jun 14 12:34:23 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:34:23 MDT 2001","Thu Jun 14 12:34:23 MDT 2001","","","Thu May 17 17:07:42 MDT 2001","Mon Jun 25 13:53:42 MDT 2001","Wed Mar 7 14:36:37 MST 2001","","Mon Jun 25 13:53:42 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 7 14:36:37 MST 2001","-53% similar to PDB:2DXA Crystal structure of trans editing enzyme ProX from E.coli (E_value = 9.5E_17);-52% similar to PDB:1DBU Crystal structure of cysteinyl-tRNA(Pro) deacylase protein from H. influenzae (HI1434) (E_value = 3.6E_16);-52% similar to PDB:1DBX Crystal structure of cysteinyl-tRNA(Pro) deacylase from H. influenzae (HI1434) (E_value = 3.6E_16);-49% similar to PDB:2CX5 Crystal structure of a putative trans-editing enzyme for prolyl tRNA synthetase (E_value = 4.6E_11);","","","Residues 12 to 154 (E-value = 8.5e-49) place PG1771 in the YbaK family which is described as YbaK / prolyl-tRNA synthetases associated domain (PF04073)","Mon Jun 25 13:53:42 MDT 2001","34541616","","","","","","1","","","PG2028" "PG1772","2126686","2129262","2577","ATGAACAAAAGAATCTTTACTGCGTGCATGGCTGTCGCCTGCATCCTGCCCGTTTTCAAGGCTGAAGCACAGAGCGATTACTTCTTTCGCTCGAAAAAAAAGAAGCCCGCAACGGAAGCTCCGGCTCAGAAATCCAAATTCGATCAGACCGTAGCCGGTGCCAAAAAGAGCGAAGGCCCTTTCACCGTTTATTTCACCAAGAAGAATGAGATCCTGTTCGCCATGCCCGACTCCGCATTCCGTCGGGAGTATCTCCTCAGCAGCCGTGTGGCCGCTACGAGCAATACGCGCGAAGCCGTGGCCGGACAGATGAGCACGTCTCCTTTCCTGATCAAGTTCTCACGTGACAGTATCAATGTCTATCTCCATACGCCTCAGGTAGGAGCTATGGTCAGAGAAGACGATCCTATCGTACCTTCATTCAAGAAGAACTTCTTCGACCCCGTTCTCAAGGCATTCCCCATCGTGGATACAAAAGACGGCAAGGTGCTGATCGACGTAACCAAATTTTTCCGCGAAGACGAGAAGAGCATCACGCCTCTGACGATCCTGCCACCCACGATGCAAAATGCCAATGTAATCAAGGGCATGCTCGACCCGACGGCCAGTATCGTGACGGAAGTCAAGAGCTTCCCCCGAAACGTGGAGATCAAGAGTATGCTCACCTACAAGACTCAGCCCTATTCCGAGCCCTACACCCTGATCATGCAACGCTCCATCCTGCTCCTCCCCGAGAAACCGATGCGTATGCGTTTGCAGGACAATCGTGTCGGGATATTCAATTCCTCTCGCCAATACTTCAGCACCGATAAAGACAAAGTGGAGTCTTTCAAGTTGATCCATCGCTGGGACCTCCAGCCCAAGGATAGTGCGGCCTATATGCGTGGCGAACCGGTAGAGCCCGTGAAGCCTATCGTTTTCTATGTGGACTCCGTCTTCCCCGACAAATGGCGTGCTACTATCAAGCAGGCTATCGAAGACTGGCGTATGGCTTTCGAAGCAGCCGGCTTCAAGAATGCCATCATCGCCAAGGACTATCCTACGAAGGAGGAAAATCCCGATTTCGATCCGGACGACATTCGCTTCAGCTGTTTCAAATATGCCACAACGACCACGGCCAACGCCATGGGGCCGAGTTTCGTAGACCCGCGAAGCGGCGAGATCATTTGTGCAGATGTGATCTGGTATCACAATGTATTGTCTCTCGTTCACAACTGGCGTTTCGTACAGACGGGAGCCGTGGATCCGCGTGTTCGCAAGGCTGTATTCGACGATGAAGTGATGCGCGAATCGCTCCGCTATGTGGCAGCTCACGAGATCGGTCACACCATCGGCCTGATGCACAACATGGGTGCCAGCTACTCGTTCACCATCGAGAACCTGCGCGATCCGCAGTTCACCCAAAAATACGGTACCACACCGAGTATCATGGACTATGCCCGCAACAACTTTGTGGCGCAGCCCGGCGACTTGGAGCGTGGTGTACGCCTGACGCCTCCCATCATCGGTGTGTATGACATTCATGCCATCAACTGGGCTTATCGTCTCGTGCCCGGAGCCAAAACGGCTGAAGAGGAAAAGCCGACACTGAACGCTTGGATCGCCGAGAAGAAAGACGATCCCATGTTTACCTTCGGAGCACAGCAGTTCCCCTATACCATCGACCCCACGGATCAGACCGAGGATCTCAGTAACGATCACTTCCGTGCCGGCGACATGTCCATCAGCAACCTGAAGATTATCGCCAAGAACATGGACAAATGGCTCCTCGAAAAGGAAGCTCGCTACGATGATCTGCGCGACATGCACGGACAGCTCATGTCCCAATACTACCGCCATGTGAGCCACATCATGCCCTATATCGGAGGAGTGGAACACTTCGAAATCCGCCAGGGCGAAGAGAATACGCTTTCCCGTCGCTTCATCACAAAAGACAAGCAACGCAAGGCCATGAATTGGCTCCTCAATCAGGCTCGCACATACCGCCAGTGGCTGGCCGAACCGGCTTTCCTCAACAAGGTAGAGCAGAACTCTGGGATGACCGACCTCTTGGGCAAGGCCATGGTGGCGGCTCTCTTCAACCCCGGTAGCATAGGACGCATATACGAAGCAGAGCAGTCCGGACAACCGGGTGTGTACAAGCTCACGGATTACGCCAACGAGCTGATCGATGCCATCTTCAACGTGAAGGGCAATCTGACCGATGCCGATCGTTCTATTCAGAACCTGGCCATCGACCTCATGTCGGCCCATAGTGGTCTCTCCACGGAAAGCAAGAATACGGCACGCCGTCTGTCCGAAGAGCTGGATGCCCTGTCGCACAAGCTCAGCGAGGACAACCTCCCATGTGCTCTCGGTTGTGGCGGTCACCACGCGGCAGAGGACGGAGCCGATTCCTTCTTCCGTCTTACGGCCTTCTCCAAGCAGGCCCCGAATGAAGTGATTGCACCCCTCCTACTGCAACAACTCAAGCGCGTGCAGACCATCTATCGCAATCGCAAGGCCACGGGCAACGCTGCCGACCGCTCGTTCTACGACTATCAACTGCTCCGTCTGGAACGCCTGATGAAGACCAAC","8.40","7.89","97762","MNKRIFTACMAVACILPVFKAEAQSDYFFRSKKKKPATEAPAQKSKFDQTVAGAKKSEGPFTVYFTKKNEILFAMPDSAFRREYLLSSRVAATSNTREAVAGQMSTSPFLIKFSRDSINVYLHTPQVGAMVREDDPIVPSFKKNFFDPVLKAFPIVDTKDGKVLIDVTKFFREDEKSITPLTILPPTMQNANVIKGMLDPTASIVTEVKSFPRNVEIKSMLTYKTQPYSEPYTLIMQRSILLLPEKPMRMRLQDNRVGIFNSSRQYFSTDKDKVESFKLIHRWDLQPKDSAAYMRGEPVEPVKPIVFYVDSVFPDKWRATIKQAIEDWRMAFEAAGFKNAIIAKDYPTKEENPDFDPDDIRFSCFKYATTTTANAMGPSFVDPRSGEIICADVIWYHNVLSLVHNWRFVQTGAVDPRVRKAVFDDEVMRESLRYVAAHEIGHTIGLMHNMGASYSFTIENLRDPQFTQKYGTTPSIMDYARNNFVAQPGDLERGVRLTPPIIGVYDIHAINWAYRLVPGAKTAEEEKPTLNAWIAEKKDDPMFTFGAQQFPYTIDPTDQTEDLSNDHFRAGDMSISNLKIIAKNMDKWLLEKEARYDDLRDMHGQLMSQYYRHVSHIMPYIGGVEHFEIRQGEENTLSRRFITKDKQRKAMNWLLNQARTYRQWLAEPAFLNKVEQNSGMTDLLGKAMVAALFNPGSIGRIYEAEQSGQPGVYKLTDYANELIDAIFNVKGNLTDADRSIQNLAIDLMSAHSGLSTESKNTARRLSEELDALSHKLSEDNLPCALGCGGHHAAEDGADSFFRLTAFSKQAPNEVIAPLLLQQLKRVQTIYRNRKATGNAADRSFYDYQLLRLERLMKTN","2126685 2129261","TIGR ID: PG2029","conserved hypothetical protein","Periplasm, Cytoplasm","This sequence corresponds to gi:34397935 in Genbank.Its nearest neighbor in the NR database is gi:29348691 from Bacteroides thetaiotaomicron VPI-5482.","
InterPro
IPR001818
Domain
Peptidase M10A and M12B, matrixin and adamalysin
PF00413\"[431-448]TPeptidase_M10
InterPro
IPR006025
Binding_site
Peptidase M, neutral zinc metallopeptidases, zinc-binding site
PS00142\"[435-444]?ZINC_PROTEASE
InterPro
IPR006026
Domain
Peptidase, metallopeptidases
SM00235\"[296-479]TZnMc
noIPR
unintegrated
unintegrated
SSF55486\"[222-514]TSSF55486


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon Dec 22 10:22:48 2003","Wed Mar 9 14:17:22 2005","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Dec 22 10:22:48 2003","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541617","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Wed Mar 9 14:17:22 2005","","1","","","PG2029" "PG1772.1","2129637","2129389","249","TTGGTTCCAAAATTTTCCTGTTATGCGTTCCTAAAAACGTGGCTCGAGAAAATTTTCGTTTTGGTTCGGGAAGAAAATAATTCTCGCGCCAAAGCGAAAAAAAAGTCGCGCGTGTTTTCCGGAAAACGTGGCCCGGAATTTTCGATGATTCCGGTTCGTAAAAGAGGAAGTGTCAAAATTCAGTTTAGAGTAAAGGATACTATCATTTGTATAGGAAAACCGCTACCAAATGGACAAAATCATCCTACT","","","9529","LVPKFSCYAFLKTWLEKIFVLVREENNSRAKAKKKSRVFSGKRGPEFSMIPVRKRGSVKIQFRVKDTIICIGKPLPNGQNHPT","","NO TIGR ID corresponds to this gene.","hypothetical protein","Periplasm, Cytoplasm","No hit found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Wed Mar 7 14:49:35 MST 2001","","Wed Mar 7 14:49:35 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No significant paralog found using loacl BLAST search.","Wed Mar 7 14:49:35 MST 2001","Wed Mar 7 14:49:35 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Mar 7 14:49:35 MST 2001","","","","","","","1","","","" "PG1773","2129890","2130468","579","TTGAGCCAACTGTACGCGCAAGAGCCGCGATTGGGTATACCGGACTCCATGTTGCGCTACGGTACCGTAGTCACCATGGAGCAGGGTGATACGGTGTACGACATCGCTTTGCCGCAGGTGTGGGTGAAACATAAGAAGTACAAGTCGCGCCAGCTGACACCGCAGGAGAGACAAGAGCTTTGGAGGCTGATTCGGGATGTAAAACGCACCTTGCCCTATGCCAAAATGATCGCAGCTACTCTGATCGAAACGTACGAATATATGGAAACGATGCCCGATGAGAAAAGCAGACAAAAGCATCTCAAGCGCATGGAAAAGGAGATGAAGCAGCAATACATGCCGGAGATGAAACGACTGACCCTCCGGCAGGGGAAGCTCCTGATCAAGCTGATCGACCGACAGTGTGCACAGTCGAGCTATCAGCTACTCAAAGCTTTTCTCGGCGGATGGAAAGCGGGATGGTGGAATCTCTTCGCCCGCTTCTATGGTGCGAGCCTGAAGACTCGGTACGAACCTGACAAGAATCCGGAAGACGCCCTGACGGAACGAATAGTTTTGTTAGTGGAAGAGAAAAGAATT","10.50","11.44","23033","LSQLYAQEPRLGIPDSMLRYGTVVTMEQGDTVYDIALPQVWVKHKKYKSRQLTPQERQELWRLIRDVKRTLPYAKMIAATLIETYEYMETMPDEKSRQKHLKRMEKEMKQQYMPEMKRLTLRQGKLLIKLIDRQCAQSSYQLLKAFLGGWKAGWWNLFARFYGASLKTRYEPDKNPEDALTERIVLLVEEKRI","2129835 2130467","TIGR ID: PG2030","hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 12:34:42 MDT 2001","","Thu Jun 14 12:34:42 MDT 2001","Thu Jun 14 12:34:42 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:34:42 MDT 2001","Thu Jun 14 12:34:42 MDT 2001","","","","Mon Jun 25 13:50:52 MDT 2001","Thu Jun 14 12:34:42 MDT 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Jun 14 12:34:42 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jun 25 13:50:52 MDT 2001","34541618","","","","","","1","","","PG2030" "PG1774","2130482","2130931","450","TTGCCACTTCGGCAAAAAAGGCTATATTGGCCTTTGTTTTTCAGAGACGACTTGATTATGGAAAAGAATAAGTTACAGCTGGAGTATGTTTTCGACCGTGTATCGACACGTAGCCTGTGGCGTTATCTGAGTACACCGGATGGTTTGTCGGAATGGTTTGCCTACGATGTGAGGCTGGAAGACAACGGGGACTTCTATTTCCAATGGGATAAGAATAGCGGCGAAAAGGCTTCTGTCCTTGAACAGCGAGAGGGCGAAAGAATCCGTTTCCAATGGCATAGGGAACAGGACCAGAATGCCTGTTTCGAATTTGTCATCCATCACTCGGAATTGACCGGAGGGAAATCTTTGGAGGTTATCGACTACATTGCTCCGGAGGAAGTGGCCGATATGGAGCACTTCTGGAACAATCTGATCAGCAGGCTTCGCCTTTCTCTCGGCGCACCCGAA","4.90","-7.08","18092","LPLRQKRLYWPLFFRDDLIMEKNKLQLEYVFDRVSTRSLWRYLSTPDGLSEWFAYDVRLEDNGDFYFQWDKNSGEKASVLEQREGERIRFQWHREQDQNACFEFVIHHSELTGGKSLEVIDYIAPEEVADMEHFWNNLISRLRLSLGAPE","2130481 2130930","TIGR ID: PG2031","hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR013538
Family
Activator of Hsp90 ATPase homologue 1-like
PF08327\"[33-92]TAHSA1
noIPR
unintegrated
unintegrated
signalp\"[1-8]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541619","","","","","","1","","","PG2031" "PG1775","2133474","2130964","2511","ATGCGCTATGCCGAAGTCCTCATTCCCTTGGCTCTTGAGGGTAGTTTTCACTACCGATTGGCCGAGGGGTTAGCCGAGAAGGCTATCGTGGGGATGCGTTGCGTAGTACCTTTCGGAGCCAAGCGATACTATACGGGGATTATCATCGGACTGTCCGACAAACGTCCCAATCTGCAAATTTCATTCAAGGAGGTTCTCTTCCTGCCTGACGATAAGCCGTCAGTTACTGCCTCACAGCTGAGTCTGTGGCAGTGGCTGTCGGCTTATTACATATGTACGCAGGGAGAAGTACTCCGTGCTGCTCTGCCTGCAGCATTACTACCCGAGAGCCATACCGTCATCCATTATAATACGGACTTCGAAGCCGACAGCCGGCTTAGTCGTGATGAAGAGGAGCTCCTCGATATTTTGGAGTCGGCAAAAGGACGAACCTACACGCTTGACGCCCTGCAAAAGGCTGTCGGCAAACGAGCGATTCGCGCTTTTACCTCCTTGGTCGAACGAGGGGCCATACGGCTGGAGGAAGAAGTAAAAAGCCGTTATAAGCCCAAGTCAGAAGTATTCGTTCGTCTGGCAGAGCCTTTCCGGACGGAAAAGACTTTTGCCTCGCTTCTGGATAGTTTGCATCGTGCTCCCAAGCAATCCGCCCTTTTGCTTCATTGGGCAGAGCTGATAACAGAGCACTCCCTCCCATATTCCTCTCCGATGCCGCAAAGGCTACTGGCGGAGTCCGATCCTCATGCTACAGTCACCCTTTCCGCTTTGAAAAAGAAAGGGATTTTTCTATCCGAATCTGTTACACACTCGGTCATGTATTCGGCCGGCGGAGGTGAGTACCGCTTGTGGGAGCAGCCCCAAGAGGAAGAAAAAGCCATTCAATCGGAAGAGAGTTCTACAGACTCCGCAGTATCGGCTTCTCTACCTCAAAAACCTCTTTCTCTCCTCTATACGCATGACTTTCGACGCAAAGAAAAACAACTCTTAGAATGGACGGAAGAAGTTGTCCGTTCAGGAGGCCAAGTCCTGTACCTCTCTCCGGAAGCGAACAAACGAGGAGGAAGCGATACTCTGTCCACACGTATGGCCGAGAGGCTGGGCAGTTGTTTGCTATCCTATCATGCCTTTGAAAGCGATGCCAAAAGGGTGGAAGTGTGGAACAGATTGGCCACAACGGAATATCCTTGCGTGGTGCTGGGTGTTCGATCGGCACTTTTCCTGCCATTCCGTCGCTTGCGATTGATTATCGTGGACGAGGAACAGGAATACCTCTACAAACAGCAGGATCCTGCCCCCCGATTCCATACGCGACAGGTGGCAGCTCGACTCGGCCGGATCCACGACTGCCCTGTTGTGTTGGCTTCGGCCACTCCTTCTGCCGAGGTGCTCCACCAAGTGCGCCACAAAGCCTGTGAACTGATCACCTGGCCGGACGATCGGGTTCGCCCCCGATTCGATTTGGAAGTCATAGACATGGGCAAGATGCGCCGTCAAAGACAGGTCGGTGCAgGTGAACTGCTTTCTTTCCCCCTCGTCTCAGCTATTGAAGAGACGATTCGGCAAAAAAAAATGGCCGTCGTCCTCCAAAATCGAAGGGGCTTCGCTCCGTATATCATTTGTAGCTCTTGTGGGGAAAAGCTCCGTTGCATCCACTGCGATGTGAGTCTCACCTATCACAAGCATTCCTGTATGCTCGTCTGCCACTACTGCGGCTACAGCAGACCCCTTCCGCGCATCTGTCCCTCCTGCAAGCGGGCATCGGGCGTAGGAGAGCCGAGCAGCCTGCAACCTGTGGGGTATGGAGCCGAAAGAATAGAGGAAGAGCTTAAAAGACGTTTCCCCACCGTCTCTATCCTCAGAATGGACAGCGATATGGCCATGAGCCGAACGAAGATGGACGAAGCTCTGGCGCGTCTGGAAGCGAAAGAGGTGGATATACTTGTTGGCACGCAACTGATCAAGGGGCAAGTCTATAACGAACATGTAGGTCTTGTAGCCGTCACCCAGCTGGACAGCATATTGGGTTTCCCGGATTTCCGCGCCTACGAACGAGCTTATCAGCTACTCTATCAGCTCATGCTTAGGAGCGGAGCCTCCCGTCTATACATACAAACGAACAATCCGGCCAACTCCTTTCCGGATTTATTGCGAGAAGGTGATTATAAGGCTTTTATCGGAAAACAATTGGAGGAAAGGCAAATGCTTTTCTTCCCACCTTTTAGCCGGCTGATACGAATCGAGTTCAGAGCAGGCGAAGAGAGCCTCGTGGAGCGAATCGCTTCCGACTATGCCGCCTCTTTGGCCGCCCATCTGCCGGAGCAGAGTCTCTCCCCCGTTTTGGTGCCGCCCATCTCTCGTCTTAGGAACGCATTCATTCGCGAATTGCTTCTTCGTCTTCCTCTCTCATCCTCCGTATCCGCGACGCGCAATATACTCGATACGATTCGCACAACACTTCAGACCCGCACTCAAGAATACAAGCGAGTGCGCATCCTATTCGATGTAGATCCGCTT","8.30","12.20","94948","MRYAEVLIPLALEGSFHYRLAEGLAEKAIVGMRCVVPFGAKRYYTGIIIGLSDKRPNLQISFKEVLFLPDDKPSVTASQLSLWQWLSAYYICTQGEVLRAALPAALLPESHTVIHYNTDFEADSRLSRDEEELLDILESAKGRTYTLDALQKAVGKRAIRAFTSLVERGAIRLEEEVKSRYKPKSEVFVRLAEPFRTEKTFASLLDSLHRAPKQSALLLHWAELITEHSLPYSSPMPQRLLAESDPHATVTLSALKKKGIFLSESVTHSVMYSAGGGEYRLWEQPQEEEKAIQSEESSTDSAVSASLPQKPLSLLYTHDFRRKEKQLLEWTEEVVRSGGQVLYLSPEANKRGGSDTLSTRMAERLGSCLLSYHAFESDAKRVEVWNRLATTEYPCVVLGVRSALFLPFRRLRLIIVDEEQEYLYKQQDPAPRFHTRQVAARLGRIHDCPVVLASATPSAEVLHQVRHKACELITWPDDRVRPRFDLEVIDMGKMRRQRQVGAGELLSFPLVSAIEETIRQKKMAVVLQNRRGFAPYIICSSCGEKLRCIHCDVSLTYHKHSCMLVCHYCGYSRPLPRICPSCKRASGVGEPSSLQPVGYGAERIEEELKRRFPTVSILRMDSDMAMSRTKMDEALARLEAKEVDILVGTQLIKGQVYNEHVGLVAVTQLDSILGFPDFRAYERAYQLLYQLMLRSGASRLYIQTNNPANSFPDLLREGDYKAFIGKQLEERQMLFFPPFSRLIRIEFRAGEESLVERIASDYAASLAAHLPEQSLSPVLVPPISRLRNAFIRELLLRLPLSSSVSATRNILDTIRTTLQTRTQEYKRVRILFDVDPL","2133473 2130963","In B.subtilis, the PriA protein is said to recognize aspecific hairpin on phiX ssRNA. The primosome structureensues, with PriA then functioning as a helicase. The complex of proteins called the primosome is involved in making primers for the initiation of synthesis of DNA strands (lagging strand) during DNA replication. It seems the role of the primosome in DNA replication of the E. coli chromosome is not understood as well as it is for bacteriophage phiX174 and plasmid pBR322 replication (in vitro).TIGR ID: PG2032","primosomal protein N' (replication factor Y)","Cytoplasm, Inner membrane","Numerous significant hits to primosomal protein N' (replication factor Y) in gapped BLAST; e.g. residues 1-836 are 26% similar to emb|CAB13444.1| primosomal replication factor Y (primosomal protein N') of Bacillus subtilis, residues 16-790 are 27% similar to dbj|BAB06228.1| primosomal replication factor Y of Bacillus halodurans, residues 1-836 are 26% similar to gb|AAK05995.1|AE006419_5 primosomal protein N' of Lactococcus lactis subsp. lactis.This sequence is similar to BT2752.","
InterPro
IPR005259
Family
Primosomal protein n
TIGR00595\"[314-837]TpriA
noIPR
unintegrated
unintegrated
SSF52540\"[266-480]T\"[559-696]TSSF52540


","BeTs to 11 clades of COG1198COG name: Primosomal protein N' (replication factor Y) - superfamily II helicaseFunctional Class: LThe phylogenetic pattern of COG1198 is -----qvcebrhuj--olinxNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 373-460 are 44% similar to a (PRIMOSOMAL N' PROTEIN REPLICATION) protein domain (PD007505) which is seen in O69436_LACCA.Residues 489-582 are 38% similar to a (PRIMOSOMAL PROTEIN N' REPLICATION) protein domain (PD008719) which is seen in PRIA_BACSU.Residues 604-696 are 39% similar to a (PRIMOSOMAL PROTEIN N' REPLICATION) protein domain (PD186317) which is seen in O05099_CLOAB.Residues 604-695 are 37% similar to a (HELICASE PROTEIN POLYPROTEIN ATP-BINDING RNA RNA-BINDING) protein domain (PD000033) which is seen in PRIA_BORBU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Fri Dec 19 10:01:16 2003","Fri Dec 19 10:01:16 2003","Fri Dec 19 10:01:16 2003","Fri Dec 19 10:01:16 2003","","Fri Dec 19 10:01:16 2003","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 28 14:51:38 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Apr 18 15:07:59 MDT 2001","34541620","","","Nurse,P., DiGate,R.J., Zavitz,K.H. and Marians,K.J. 1990. Molecular cloning and DNA sequence analysis of Escherichia coli priA, the gene encoding the primosomal protein replication factor Y. Proc. Natl. Acad. Sci. U.S.A. 87(12): 4615-4619. PubMed: 2162049.Lee,E.H., Masai,H., Allen,G.C. Jr. and Kornberg,A. 1990. The priA gene encoding the primosomal replicative n' protein of Escherichia coli. Proc. Natl. Acad. Sci. U.S.A. 87 (12): 4620-4624. PubMed: 2162050.","","Fri Dec 19 10:01:16 2003","1","","","PG2032" "PG1776","2134896","2133511","1386","ATGTCGCGTCCACGGGCTGAAATGCCCGAACTCGACCCCCTCTATCGTAGCTCCAAGATCAATGAAGAGGTGAATCGCGGTTTGTCCCGTGAGGCCGCTATGGCCGAAGCCTCTCGTTGTCTCGATTGTCCGCAACCGAGCTGTATGGAAGGATGTCCTGTGAGTATCAATATCCCGACCTTTATCAAGCAGATAGAAGTAGGCGATATACTGGCTGCAGCATCTACTTTGCGAGAGACAAGCTCTTTGCCGGCGGTGTGCGGACGTGTCTGTCCGCAAGAGAAGCAATGCGAAAGCCGGTGCATCTATACGAAAATGAACAAACCGGCTGTTGCCATCGGTTTCTTGGAACGCTTTGCCGCAGACTACGAACGCGAACAGGGCGCACTCAAAGTTCCCGAAATGGCTCCTCGCAACGGTATCAAAGTGGCTGTGATCGGAAGCGGTCCGGCCGGACTTTCTTTCTCCGGAGACATGGCCAAGTTGGGCTATGACGTGACCGTATTCGAAGCCCTGCACGAAATCGGAGGAGTGCTCAAGTACGGAATTCCGGAATTTCGTCTTCCGAATAGTATAGTCGATTCGGAGATCAATCTTCTCGAAGAGATGGGCGTACGCTTTGAGACGAATACGATTGTCGGCCGAACGATCGCATACGATGACCTGCATGAAGCAGGATTTCGCGGTGTATTCGTAGGAAGTGGTGCCGGTCTGCCCAATTTCATGAATATCCCGGGTGAAAACCTTGTAGGAGTCATGTCTTCGAATGAATACCTGACGCGCGTCAATCTGATGCATGCGAGCCAAGCCGACAGCGACACACCCGTTTTCAAGGGCAAGAATGTAGCTGTCATCGGGGGCGGCAATACGGCCATGGACTCCGTTCGTACGGCCAAACGCCTCGGAGCAGAACGTGCCATGATCGTCTATCGACGCAGCGAAGAGGAAATGCCGGCAAGATTGGAAGAGGTGAAGCACGCCAAGGAGGAAGGAATAGAGTTCCTGACACTGCACAATCCTATCGAATATATCGGCAATGAACGAGGCCGAGTGACTGCGATGCGCCTGCAAAAGATGGAGCTTGGCGAGCCGGATGCAGGTGGTCGTCGTCGTCCTGTTGCGATCACGGGGGCTATCGAGGAGATCCCGGTGGACGAAGTGATTGTAAGTATCGGTGTATCGCCCAATCCGCTCGTTCCCCGAACTATTTCCGGTCTTGAAGTGACAAGCAAAGGAACCATCGTCGTCAATGAGAGCAATCAGACAGCTCTCCCCGATGTTTTTGCCGGTGGTGACATCGTTCGTGGCGGAGCCACTGTGATATTGGCGATGGGCGATGGACGGAAAGCAGCAGCTGCCATGCACGAATATCTGAAAGCGGAATCA","5.10","-10.88","49801","MSRPRAEMPELDPLYRSSKINEEVNRGLSREAAMAEASRCLDCPQPSCMEGCPVSINIPTFIKQIEVGDILAAASTLRETSSLPAVCGRVCPQEKQCESRCIYTKMNKPAVAIGFLERFAADYEREQGALKVPEMAPRNGIKVAVIGSGPAGLSFSGDMAKLGYDVTVFEALHEIGGVLKYGIPEFRLPNSIVDSEINLLEEMGVRFETNTIVGRTIAYDDLHEAGFRGVFVGSGAGLPNFMNIPGENLVGVMSSNEYLTRVNLMHASQADSDTPVFKGKNVAVIGGGNTAMDSVRTAKRLGAERAMIVYRRSEEEMPARLEEVKHAKEEGIEFLTLHNPIEYIGNERGRVTAMRLQKMELGEPDAGGRRRPVAITGAIEEIPVDEVIVSIGVSPNPLVPRTISGLEVTSKGTIVVNESNQTALPDVFAGGDIVRGGATVILAMGDGRKAAAAMHEYLKAES","2134979 2133510","The glutamate synthase large subunit has not been identified.TIGR ID: PG2033","glutamate synthase beta subunit (glutamate synthase small subunit)","Cytoplasm, Periplasm","Residues 1-461 have 52% similarity to AE001806, T. maritima glutamate synthase, beta subunit.Residues 3-458 have 50% similarity to AJ248288, P. abyssi glutamate synthase small chain.Reisdues 3-462 have 50% similarity to AP000007, P. horikoshii probable glutamate synthase small chain.This sequence is similar to BT4310.","
InterPro
IPR000103
Domain
Pyridine nucleotide-disulphide oxidoreductase, class-II
PR00469\"[142-164]T\"[277-301]T\"[439-458]TPNDRDTASEII
InterPro
IPR000759
Family
Adrenodoxin reductase
PR00419\"[142-164]T\"[165-178]T\"[207-217]T\"[282-296]T\"[316-329]TADXRDTASE
InterPro
IPR001327
Domain
Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region
PD000139\"[239-314]TFAD_pyr_redox
PF00070\"[142-175]T\"[281-356]TPyr_redox
InterPro
IPR002173
Family
Carbohydrate kinase, PfkB
PS00584\"[426-439]?PFKB_KINASES_2
InterPro
IPR006004
Domain
Glutamate synthase (NADPH), homotetrameric
TIGR01316\"[13-458]TgltA
InterPro
IPR009051
Domain
Alpha-helical ferredoxin
SSF46548\"[3-151]THelical_ferredxn
InterPro
IPR012285
Domain
Fumarate reductase, C-terminal
G3DSA:1.10.1060.10\"[7-144]TFum_reductase_C
InterPro
IPR013027
Domain
FAD-dependent pyridine nucleotide-disulphide oxidoreductase
PR00368\"[142-164]T\"[281-306]T\"[385-399]T\"[427-434]TFADPNR
PF07992\"[142-438]TPyr_redox_2
noIPR
unintegrated
unintegrated
G3DSA:3.50.50.60\"[237-392]TG3DSA:3.50.50.60
PTHR11938\"[3-462]TPTHR11938
PTHR11938:SF9\"[3-462]TPTHR11938:SF9


","BeTs to 10 clades of COG0493COG name: NADPH-dependent glutamate synthase beta chain and related oxidoreductasesFunctional Class: E,RThe phylogenetic pattern of COG0493 is ---KYqVcEbR------l--xNumber of proteins in this genome belonging to this COG is 1","***** IPB000103 (Pyridine nucleotide-disulphide oxidoreductase class-II) with a combined E-value of 1.3e-12. IPB000103A 142-166 IPB000103C 253-295 IPB000103E 422-458","Residues 58-137 are 49% similar to a (SYNTHASE GLUTAMATE OXIDOREDUCTASE SMALL) protein domain (PD149671) which is seen in O83717_TREPA.Residues 143-454 are 54% similar to a (OXIDOREDUCTASE FLAVOPROTEIN FAD REDUCTASE REDOX-ACTIVE) protein domain (PD000139) which is seen in O59547_PYRHO.Residues 89-330 are 22% similar to a (HYPOTHETICAL PROTEIN RP006) protein domain (PD217123) which is seen in Y006_RICPR.Residues 129-239 are 36% similar to a (DIHYDROPYRIMIDINE DEHYDROGENASE OXIDOREDUCTASE) protein domain (PD186972) which is seen in DPYD_BOVIN.","","Thu Jun 14 12:35:08 MDT 2001","","Thu Jun 14 12:35:08 MDT 2001","Thu Jun 14 12:35:08 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:35:08 MDT 2001","Thu Jun 14 12:35:08 MDT 2001","","Thu Mar 28 11:27:08 2002","Thu Mar 28 11:08:00 2002","Mon Jan 5 12:25:04 2004","Thu Mar 28 11:08:00 2002","Mon Jun 25 13:48:50 MDT 2001","Mon Jun 25 13:48:50 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 145-456 have 24% similarity to PG0557, alkyl hydroperoxide reductase subunit F.","Mon Jun 25 13:48:50 MDT 2001","Wed Mar 7 14:58:57 MST 2001","-50% similar to PDB:1GT8 DIHYDROPYRIMIDINE DEHYDROGENASE (DPD) FROM PIG, TERNARY COMPLEX WITH NADPH AND URACIL-4-ACETIC ACID (E_value = 6.3E_49);-50% similar to PDB:1GTE DIHYDROPYRIMIDINE DEHYDROGENASE (DPD) FROM PIG, BINARY COMPLEX WITH 5-IODOURACIL (E_value = 6.3E_49);-50% similar to PDB:1GTH DIHYDROPYRIMIDINE DEHYDROGENASE (DPD) FROM PIG, TERNARY COMPLEX WITH NADPH AND 5-IODOURACIL (E_value = 6.3E_49);-50% similar to PDB:1H7W DIHYDROPYRIMIDINE DEHYDROGENASE (DPD) FROM PIG (E_value = 6.3E_49);-50% similar to PDB:1H7X DIHYDROPYRIMIDINE DEHYDROGENASE (DPD) FROM PIG, TERNARY COMPLEX OF A MUTANT ENZYME (C671A), NADPH AND 5-FLUOROURACIL (E_value = 6.3E_49);","","","Residues 142 to 442 (E-value = 2.8e-32) place PG1776 in the Pyr_redox family which is described as Pyridine nucleotide-disulphide oxidoreductase (PF00070)","Mon Jun 25 13:48:50 MDT 2001","34541621","","","","","","1","","","PG2033" "PG1777","2135794","2135006","789","ATGAATAAAATCGTATCCAAAGAATACTTCTCGGCTAATGTGATCAAGCTGGAAGTAGAGGCTCCTCGTATAGCCAAATCGCGAAGAGCAGGACATTTTGTAATCATCCGCGTTGGAGAAAAAGGCGAACGCATCCCCCTGACTATTGCACAGGCTGACATAAAGCGCGGTACCATTACCTTAGTGGTTCAGGCCGTGGGCAAATCTTCCAAGAAATTGGCCGAACTCGAAGTCGGCGACTATATCACGGATGTGGTAGGTCCGCTGGGACAGAGTACGCATATCGAAAAGGTCGGCACAGTGGTTTGTGCCGGAGGCGGTGTGGGTGTGGCTCCTTTGCTCCCGATCGTGGAGGCTTTCCACAAAGCAGGCAACCGTGTAATTGTCGTATTGGCTGCCAGAACTAAAGATCTGGTTATCCTTGAAGAACAAATGCGAGCCAATAGCGATGAAGTGATCATCATGACAGACGATGGGTCTTATGGGACGAAAGGCCTCGTAACGGATGGAGTGGAAAGCGTTATCAAACGGGAAACGGTAGACCTCTGCGTTACGATCGGGCCGGCTGTGATGATGAAGTTCGTTTCTCTCCTGACCAAACGTTACGAGATACCGACCATAGCTTCTCTCAATACAATTATGGTGGATGGCACCGGTATGTGTGGGGCTTGTCGTATAAGCGTGGGAGGACAGACGAAATTCGTCTGTGTCGATGGCCCCGAATTCGATGCACACCAAGTGGATTTCGATGAGATGATCATGCGTTTGGGCGCATACCGAGAGATGGAA","6.50","-1.26","28338","MNKIVSKEYFSANVIKLEVEAPRIAKSRRAGHFVIIRVGEKGERIPLTIAQADIKRGTITLVVQAVGKSSKKLAELEVGDYITDVVGPLGQSTHIEKVGTVVCAGGGVGVAPLLPIVEAFHKAGNRVIVVLAARTKDLVILEEQMRANSDEVIIMTDDGSYGTKGLVTDGVESVIKRETVDLCVTIGPAVMMKFVSLLTKRYEIPTIASLNTIMVDGTGMCGACRISVGGQTKFVCVDGPEFDAHQVDFDEMIMRLGAYREME","2135805 2135005","With gapped BLAST this protein is 46% similar/28% identical to PG0946, a dihydroorotate dehydrogenase electron transfer subunit. Other subunits have not been identified.TIGR ID: PG2034","hydrogenase gamma subunit","Cytoplasm, Periplasm","Residues 1-263 have 56% similarity to AJ248286, P. abyssi hydrogenase, subunit gamma related protein.Residues 1-263 have 54% similarity to AE001245, T. pallidum hydrogenase, gamma chain (hydG).Residues 1-263 have 45% similarity to AE001806, T. maritima probable dihydroorate dehydrogenase electron transfer subunit.","
InterPro
IPR001433
Domain
Oxidoreductase FAD/NAD(P)-binding
PF00175\"[102-197]TNAD_binding_1
InterPro
IPR008333
Domain
Oxidoreductase FAD-binding region
PF00970\"[1-94]TFAD_binding_6
InterPro
IPR012165
Family
Cytochrome-c3 hydrogenase, gamma subunit
PIRSF006816\"[1-253]TCyc3_hyd_g
noIPR
unintegrated
unintegrated
G3DSA:2.40.30.10\"[4-91]TG3DSA:2.40.30.10
G3DSA:3.40.50.80\"[92-209]TG3DSA:3.40.50.80
PTHR11938\"[3-163]TPTHR11938
PTHR11938:SF7\"[3-163]TPTHR11938:SF7
SSF52343\"[91-249]TSSF52343
SSF63380\"[1-93]TSSF63380


","BeTs to 8 clades of COG0543COG name: 2-Octaprenylphenol hydroxylase and related flavodoxin oxidoreductasesFunctional Class: H,CThe phylogenetic pattern of COG0543 is amtKYQV-EbRh-----lin-Number of proteins in this genome belonging to this COG is 3","No significant hit to the Blocks database.","Residues 199-263 are 61% similar to a (PROTEIN LONG 285AA HYDROGENASE GAMMA CHAIN HYDG 298AA) protein domain (PD024133) which is seen in O83718_TREPA.Residues 1-116 are 46% similar to a (PROTEIN LONG 285AA 298AA) protein domain (PD186942) which is seen in O83718_TREPA.Residues 118-194 are 53% similar to a (PROTEIN SUBUNIT HYDROGENASE GAMMA) protein domain (PD149798) which is seen in O83718_TREPA.","","Thu Jun 14 12:35:27 MDT 2001","","Thu Jun 14 12:35:27 MDT 2001","Thu Jun 14 12:35:27 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:35:27 MDT 2001","Thu Jun 14 12:35:27 MDT 2001","","Thu Mar 28 15:51:18 2002","Thu May 17 17:20:30 MDT 2001","Mon Jun 25 13:45:01 MDT 2001","Thu Mar 28 15:50:25 2002","","Mon Jun 25 13:45:01 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 2-251 have 28% similarity to PG0946, probable dihydroorotate dehydrogenase electron transfer subunit. ","Mon Jun 25 13:45:01 MDT 2001","Tue Jul 22 16:47:08 2008","-45% similar to PDB:1EP1 CRYSTAL STRUCTURE OF LACTOCOCCUS LACTIS DIHYDROOROTATE DEHYDROGENASE B (E_value = 2.5E_11);-45% similar to PDB:1EP2 CRYSTAL STRUCTURE OF LACTOCOCCUS LACTIS DIHYDROOROTATE DEHYDROGENASE B COMPLEXED WITH OROTATE (E_value = 2.5E_11);-45% similar to PDB:1EP3 CRYSTAL STRUCTURE OF LACTOCOCCUS LACTIS DIHYDROOROTATE DEHYDROGENASE B. DATA COLLECTED UNDER CRYOGENIC CONDITIONS. (E_value = 2.5E_11);","","","Residues 1 to 94 (E-value = 6.1e-05) place PG1777 in the FAD_binding_6 family which is described as Oxidoreductase FAD-binding domain (PF00970)Residues 98 to 198 (E-value = 7.3e-05) place PG1777 in the NAD_binding_1 family which is described as Oxidoreductase NAD-binding domain (PF00175)","Tue Jul 22 16:47:08 2008","34541622","","","","","","1","","","PG2034" "PG1778","2135995","2136669","675","ATGCGCATTGATATAATCACCGTGCTGCCCGAAATGATCGAAAATACACTCAACTGCTCGATCATCGGGAGGGCACAAGAAAGAGGACTGCTGGAACTGAAACTGCACCAGCTTCGCGACTATTCCACCGATAAATGGAAACGTGTGGACGACTATCCATTCGGTGGAGAGCCCGGCATGGTGATGCAAATAGAACCGATCGACCGGATTATCACCGAACTGAAAACCCAGAGAGAATACGATGAGGTGATATTCACCTCTCCCGACGGTGAGCGTTTCGACCAACCGATGGCCAATGAACTGAGTCTCCTATCCAATTTGATTGTTCTTTGTGGACATTATAAGGGGATAGACTATCGTATCAGGGAACATTTGATCACTCGTGAGATTTCGATCGGCGACTACGTACTCACCGGTGGAGAGTTGGCCGCCGCCGTGATGACCGATGCGATCGCCCGCCTCATCCCCGGAGTTCTCAACGATGCCGGCAGCGCACTGTCCGACACCTTTCAGGACAATCTGCTGGCCCCTCCGGTCTATACCCGACCGGCCGAGTATAAAGGTTGGCGAGTGCCGGATATTCTGCTCAGCGGACATGAAGCCAATATCGCCAAATGGCGCCTTGAACAAGCTGTCGAGCGTACTAAGCGGTTGCGCCCCGATTTGATAAAAGAC","4.90","-8.12","25590","MRIDIITVLPEMIENTLNCSIIGRAQERGLLELKLHQLRDYSTDKWKRVDDYPFGGEPGMVMQIEPIDRIITELKTQREYDEVIFTSPDGERFDQPMANELSLLSNLIVLCGHYKGIDYRIREHLITREISIGDYVLTGGELAAAVMTDAIARLIPGVLNDAGSALSDTFQDNLLAPPVYTRPAEYKGWRVPDILLSGHEANIAKWRLEQAVERTKRLRPDLIKD","2135994 2136668","TIGR ID: PG2035","tRNA (guanine-N-1)-methyltransferase","Cytoplasm","Numerous significant hits to tRNA methyltransferase proteins in gapped BLAST; e.g. residues 1-224 are 49% similar to dbjBAB06198.1 tRNA methyltransferase of Bacillus halodurans, residues 1-223 are 49% similar to gbAAK05662.1AE006387_5 tRNA methyltransferase of Lactococcus lactis subsp. lactis, residues 1-222 are 46% similar to gbAAD36636.1AE001802_5 tRNA guanine-N1 methyltransferase of Thermotoga maritima.This sequence is similar to BT0893.","
InterPro
IPR002649
Family
tRNA (guanine-N1-)-methyltransferase
PD004978\"[30-224]TtRNA_m1G_mtfrase
PF01746\"[22-220]TtRNA_m1G_MT
TIGR00088\"[1-225]TtrmD
noIPR
unintegrated
unintegrated
G3DSA:1.10.1270.20\"[169-225]TG3DSA:1.10.1270.20
G3DSA:3.40.1280.10\"[1-159]TG3DSA:3.40.1280.10
PIRSF000386\"[1-225]TtRNA_mtase
SSF75217\"[1-225]TSSF75217


","BeTs to 12 clades of COG0336COG name: tRNA-(guanine-N1)-methyltransferaseFunctional Class: JThe phylogenetic pattern of COG0336 is -----qvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** PF01746 (tRNA (Guanine-1)-methyltransferase) with a combined E-value of 1.2e-82. PF01746A 39-69 PF01746B 84-118 PF01746C 129-170 PF01746D 174-222","Residues 24-224 are 46% similar to a (TRNA METHYLTRANSFERASE TRANSFERASE) protein domain (PD004978) which is seen in TRMD_BACSU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Mar 21 16:38:20 MST 2000","Wed Jul 23 13:23:14 2008","Wed Mar 28 15:00:06 MST 2001","Wed Mar 28 15:00:06 MST 2001","Wed Mar 28 15:00:06 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Jul 23 13:23:14 2008","-63% similar to PDB:1UAJ Crystal structure of tRNA(m1G37)methyltransferase: Insight into tRNA recognition (E_value = 3.7E_50);-63% similar to PDB:1UAK Crystal structure of tRNA(m1G37)methyltransferase: Insight into tRNA recognition (E_value = 3.7E_50);-63% similar to PDB:1UAL Crystal structure of tRNA(m1G37)methyltransferase: Insight into tRNA recognition (E_value = 3.7E_50);-63% similar to PDB:1UAM Crystal structure of tRNA(m1G37)methyltransferase: Insight into tRNA recognition (E_value = 3.7E_50);-63% similar to PDB:1P9P The Crystal Structure of a M1G37 tRNA Methyltransferase, TrmD (E_value = 3.5E_48);","","","Residues 22 to 225 (E-value = 3.8e-93) place PG1778 in the tRNA_m1G_MT family which is described as tRNA (Guanine-1)-methyltransferase (PF01746)","Wed Mar 28 15:00:06 MST 2001","34541623","","","","","","1","","","PG2035" "PG1779","2136704","2137612","909","ATGAAGATGATAGAATGGCTCACAAGCAAACTGCCCGATCGGGCACATGTTCGCTCCATCATATTCGGCATGAATACCCCCACGGGACGCCTCTTCGATATTCTCCTGCTATGCCTCATCCTTCTGAGCGTCATTGTCGTCTCAGCAGAAAGTACCGTAGGCCTGTCCCATAGCACGAGGAATTTTTTGCATTGGTGCGAGTGGGTTATCACCATTGTATTCACCATCGAATACATCCTGCGGATCTACTGCCTTCATAAACCGTGGCGGTACATCCTTTCCTTTTACGGCATCATAGACCTCATCTCCATACTTCCCTCCTATATAGCCCTTGTCTATAGCGGAGCACAGGTGCTGATGGTCTTCCGCATCCTTCGACTGCTGAGGATCTTCCGTATCCTGAGCCTGAACAACCTCGTCTCGGCAGGCGATATGCTCGTGCGATCGATACGCGCCAGCATGGCCAAGATTATGGTCTTCATGCTTTTTCTTCTCCTGCTCGTCACCGTTCTCGGCTCGGTCATGTACCTGATCGAAGGACGGGGCAATCCCAATTTTTCCAGTATCCCCAAGTCCATCTATTGGGCTATCGTCACGCTGACCACTGTAGGCTATGGCGATATTACCCCCGTCACGGCCGTCGGGCAGTTGGTATCCACGATAGTCATGCTGCTGGGTTACTCCATCATTGCCGTACCGACGGGAATCATTTCGGCCGAGATGACCAAATCCAATCGCACCGACTCCATGGkGGCTTTCGATACACCCATCCGCTGTCCGCGCTGCAACAAACGCATCCGCAGACACAAGGCCCGCTACTGCGACCAATGTGGCTACTCGCTTTTTACACACGGTCATACGGTAGTCCCCAACACCTATAAGCCGGAAGGGGATACCGGCAGTAACGAA","10.20","13.34","77615","MKMIEWLTSKLPDRAHVRSIIFGMNTPTGRLFDILLLCLILLSVIVVSAESTVGLSHSTRNFLHWCEWVITIVFTIEYILRIYCLHKPWRYILSFYGIIDLISILPSYIALVYSGAQVLMVFRILRLLRIFRILSLNNLVSAGDMLVRSIRASMAKIMVFMLFLLLLVTVLGSVMYLIEGRGNPNFSSIPKSIYWAIVTLTTVGYGDITPVTAVGQLVSTIVMLLGYSIIAVPTGIISAEMTKSNRTDSMXAFDTPIRCPRCNKRIRRHKARYCDQCGYSLFTHGHTVVPNTYKPEGDTGSNE","2136703 2137611","TIGR ID: PG2036","ion transporter","Inner membrane, Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 14-282 are 38% similar to gb|AAG04885.1| probable potassium channel of Pseudomonas aeruginosa, residues 12-281 are 36% similar to gb|AAF10409.1|AE001937_5 ion transporter, putative of Deinococcus radiodurans, residues 14-278 are 35% similar to gb|AAF84235.1|AE003973_3 ion transporter of Xylella fastidiosa.","
InterPro
IPR001878
Domain
Zinc finger, CCHC-type
SM00343\"[258-276]TZnF_C2HC
InterPro
IPR003091
Family
Voltage-dependent potassium channel
PR00169\"[23-51]T\"[65-88]T\"[91-111]T\"[127-153]T\"[156-179]T\"[186-208]T\"[215-241]TKCHANNEL
InterPro
IPR005821
Domain
Ion transport
PF00520\"[65-237]TIon_trans
noIPR
unintegrated
unintegrated
G3DSA:1.10.287.70\"[150-251]Tno description
PTHR11537\"[14-282]TVOLTAGE-GATED POTASSIUM CHANNEL
PTHR11537:SF14\"[14-282]TPOTASSIUM CHANNEL
signalp\"[1-49]?signal-peptide
tmhmm\"[32-52]?\"[62-82]?\"[92-112]?\"[118-136]?\"[157-177]?\"[217-237]?transmembrane_regions


","No hit to the COGs database.","***** PR00169 (Potassium channel signature) with a combined E-value of 4.4e-32. PR00169B 23-51 PR00169C 65-88 PR00169D 91-111 PR00169E 127-153 PR00169F 156-179 PR00169G 186-208 PR00169H 215-241***** PR01333 (Two pore domain K+ channel signature) with a combined E-value of 4.7e-07. PR01333A 198-226 PR01333B 201-210","Residues 174-237 are 46% similar to a (CHANNEL IONIC POTASSIUM PROTEIN TRANSMEMBRANE ION) protein domain (PD000141) which is seen in O62350_CAEEL.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","Tue Feb 6 13:46:02 MST 2001","Tue Feb 6 13:46:02 MST 2001","","","Fri Feb 9 14:50:14 MST 2001","Fri Feb 9 14:50:14 MST 2001","Tue Feb 6 13:46:02 MST 2001","Thu May 17 17:25:31 MDT 2001","Thu May 17 17:25:31 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 32-248 are 28% similar to PG1405, a probable voltage gated potassium channel.","Tue Jun 5 13:16:08 MDT 2001","Thu May 17 17:25:31 MDT 2001","-45% similar to PDB:2A79 Mammalian Shaker Kv1.2 potassium channel- beta subunit complex (E_value = 1.9E_13);","","","Residues 62 to 237 (E-value = 9.5e-37) place PG1779 in the Ion_trans family which is described as Ion transport protein (PF00520)","Thu May 17 17:25:31 MDT 2001","34541624","","","","","","1","","","PG2036" "PG1780","2138300","2137905","396","ATGACCTATACATCGCTTCAGCTCGATCGCGACCACCGGGCACGAGGGTTTCGCTCGGCCGGTTATCACTTCTACATCCGTCGCAATGGAGATACGGAGGCATTGCGTCCGACGACAGAGCCGGGAGCGCACGCCAAAGGGTACAATCACTGTAGTATAGGTGTCTGCTACGAGGGAGGTCTGGATGCGGCGGCTAAGCCGGCCGATACGCGAACTCCGCAGCAGAAAACCGCCCTGAGGCGTTTGCTGATGGAACTGAGAAACCTGTACCCACAGGCGAGTATAGTCGGCCATCGCGACTTGAGCTACGATCGCAATTACGACGGGAGCATTACTCCCGACGAATGGATGAAGGCTTGTCCTTGTTTCGATGCACATGCAGAATACAGTCGGCTA","8.20","3.24","14981","MTYTSLQLDRDHRARGFRSAGYHFYIRRNGDTEALRPTTEPGAHAKGYNHCSIGVCYEGGLDAAAKPADTRTPQQKTALRRLLMELRNLYPQASIVGHRDLSYDRNYDGSITPDEWMKACPCFDAHAEYSRL","2138350 2137904","TIGR ID: PG2038TIGR ID: PG2039","N-acetylmuramoyl-L-alanine amidase","Cytoplasm, Extracellular","Residues 29-124 have 48% similarity to U32826, H. influenzae N-acetylmuramoyl-L-alanine amidase.Residues 12-124 have 40% similarity to X17255, Barteriophage T3 N-acetylmuramoyl-L-alanine amidase.Residues 12-124 have 40% similarity to S75616, Barteriophage T7 N-acetylmuramoyl-L-alanine amidase.","
InterPro
IPR002048
Domain
Calcium-binding EF-hand
PS50222\"[103-126]TEF_HAND_2
InterPro
IPR002502
Domain
N-acetylmuramoyl-L-alanine amidase, family 2
PF01510\"[1-126]TAmidase_2
InterPro
IPR015510
Domain
peptidoglycan recognition proteins
PTHR11022\"[1-132]TPGRPs
noIPR
unintegrated
unintegrated
G3DSA:3.40.80.10\"[7-131]TG3DSA:3.40.80.10
PTHR11022:SF4\"[1-132]TPTHR11022:SF4
SSF55846\"[9-127]TSSF55846


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 29-124 are 48% similar to a (N-ACETYLMURAMOYL-L-ALANINE AMIDASE LYSOZYME HYDROLASE) protein domain (PD020664) which is seen in O05071_HAEIN.","","Thu Jun 14 12:35:50 MDT 2001","","Thu Jun 14 12:35:50 MDT 2001","Thu Jun 14 12:35:50 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:35:50 MDT 2001","Thu Jun 14 12:35:50 MDT 2001","","Mon Jun 25 13:40:37 MDT 2001","Wed Mar 7 15:19:36 MST 2001","Mon Jun 25 13:40:37 MDT 2001","Wed Mar 7 15:19:36 MST 2001","","Mon Jun 25 13:40:37 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 7 15:19:36 MST 2001","-52% similar to PDB:1ARO T7 RNA POLYMERASE COMPLEXED WITH T7 LYSOZYME (E_value = 9.6E_17);-52% similar to PDB:1LBA THE STRUCTURE OF BACTERIOPHAGE T7 LYSOZYME, A ZINC AMIDASE AND AN INHIBITOR OF T7 RNA POLYMERASE (E_value = 9.6E_17);","","","No significant hits to the Pfam 11.0 database","Mon Jun 25 13:40:37 MDT 2001","34541626","","","","","","1","","","PG2039" "PG1781","2138967","2138494","474","ATGGCAGTTTCATTCAAAGTAAAAGAACGAAAAGTGATGATCAACGGACAGCCGGCGAAGATTCGATACGCCCAAACCCTGAAAACAGGAGATATGGATTTGTCCGAGATCTGCGATCTGACAAGCAAAATCTCCGCTGTGAGTGAGGGAGATGTCCGCTCTATCATCAATACGGTAACGGGCCTTGTCATCACCGGACTCAAGCAAGGACGGGCTATCTCGTTGGGAGAATTGGGTCGCTTCCGGATCAGTCTCAGCTCCAAAGCCGCCAAAGAAGGAGAGGAATTTACCGTGGAAAATATCCGCCGAGCACGGGTGCTCTTTCTGCCCGGTGGGGATATTCGCCGCGCCTGTCGGCAAATTCGTCTGAAAGGGATCAATATGCTTCGTCCCGGAGAACAGCAAGGTGGTACTCCCTCTGTTCCTGATTCTCCCGAGGGCGGCGGTGAGCAAGGCAGCGGAGGCGGCGGTCTC","10.50","6.90","16827","MAVSFKVKERKVMINGQPAKIRYAQTLKTGDMDLSEICDLTSKISAVSEGDVRSIINTVTGLVITGLKQGRAISLGELGRFRISLSSKAAKEGEEFTVENIRRARVLFLPGGDIRRACRQIRLKGINMLRPGEQQGGTPSVPDSPEGGGEQGSGGGGL","2138966 2138493","TIGR ID: PG2040","DNA-binding protein, histone-like family","Cytoplasm, Extracellular","This sequence corresponds to gi:34397945 in Genbank.Its nearest neighbor in the NR database is gi:53714063 from Bacteroides fragilis YCH46.","
InterPro
IPR005902
Family
Putative DNA-binding protein, HU-related
TIGR01201\"[1-158]THU_rel
InterPro
IPR010992
Family
IHF-like DNA-binding
SSF47729\"[31-124]TIHF_like_DNA_bnd


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Mar 9 14:25:21 2005","Wed Mar 9 14:25:21 2005","Wed Mar 7 15:24:52 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","PG1781 is weakly similar to several hypothetical proteins. Residues 1-156 have 27% similarity to PG0306.Residues 3-158 have 28% similarity to PG0200.Residues 3-152 have 24% similarity to PG1221. Also to PG1712 and PG1068. PG1781 is also weakly similar to several conserved hypothetical proteins, PG0502, PG1124, and PG0511.","Tue Jun 5 13:24:18 MDT 2001","Wed Mar 7 15:24:52 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Jun 5 13:24:18 MDT 2001","34541627","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Wed Mar 9 14:25:21 2005","","1","","","PG2040" "PG1782","2140059","2139331","729","ATGAAAAGGATTTTTACTGTAGCCCTTGTGCTACTTGCTTCGGTCACTATGGCCATCGGACAAAGCCGCCCGGCACTTCGCGTAGATGCCAACTTCGTAGGCAGCAATCAGAGCATGAAAAGAGACGGATATGTGTGGGACACCAAAATGAATGTCGGCCTGCGGGTCGGTGCCGCTGCCGAATTCATGATCGGATCAAGAGGATTCTACTTGGCTCCGGGTCTGAACTATACGATGAAGGGCTCCAAAACCGAATGGGATATACCCGAAATGGTTCCTGGTACCTATATTACGATGGTTTCCACTCGCTTGCACTATCTGCAACTGCCGATCAATGCCGGCATGCGGTTCGACCTGATGAATGACATGGCGGTTTCGATCGAAGCGGGTCCTTTCCTTGCATACGGTATATATGGTACATATCGGCAGAAGTTGGAAGGATGGAAGCCGAACAACTACAGCACAGAGTTTTTTGGCCCAACGCTTGGTGGCCCAACAAATATCCGCTGGGACATCGGGGCAAACATAATAGCCGCATTCCACTATAAGCGTTATTATATACAGATAGGCTATGAACATGGATTTGTGGATATTGTGTCAGGTGGAGGTTCTGATATTCCCCGACTGAACGACAATAGGCAATCCTCTTCGACGACCGCTCTAAGAGAAAAGGGAAATAACGAATACGCTTATAATCGTGACTTCTTCGTGGGCATAGGTTACCGCTTT","10.20","5.72","27236","MKRIFTVALVLLASVTMAIGQSRPALRVDANFVGSNQSMKRDGYVWDTKMNVGLRVGAAAEFMIGSRGFYLAPGLNYTMKGSKTEWDIPEMVPGTYITMVSTRLHYLQLPINAGMRFDLMNDMAVSIEAGPFLAYGIYGTYRQKLEGWKPNNYSTEFFGPTLGGPTNIRWDIGANIIAAFHYKRYYIQIGYEHGFVDIVSGGGSDIPRLNDNRQSSSTTALREKGNNEYAYNRDFFVGIGYRF","2140058 2139330","TIGR ID: PG2041","hypothetical protein","Outer membrane, Extracellular","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR000758
Family
Virulence-related outer membrane protein
PS00695\"[235-243]?ENT_VIR_OMP_2


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Mar 7 15:27:08 MST 2001","","Wed Mar 7 15:27:08 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1-243 have 45% similarity to PG1592, and residues 1-242 have 26% similarity to PG1840, both hypothetical proteins.","Tue Jun 5 13:18:44 MDT 2001","Wed Mar 7 15:27:08 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Jun 5 13:18:44 MDT 2001","34541628","","","","","","1","","","PG2041" "PG1783","2141202","2140195","1008","ATGCTTGATATGGAGTTGGAATCTTTTCTCTCTATGGAAAAGCAAGGGGATATTAGCGATGCTTTTTTGAGTGCAGTAAAAGCTGAAATGCAACAAATGGTTTTGTATGCAGCAGGTTTGGCAGTTCGTAATATAGAAGAAACAAATAGGCTAAGGCAGAAAGCAAAAGAATTATATTTCTATTATCTCGAACGCTATAGTCCGTTGGCGGAAATGTATAAAGGAAGCGAAATGAGTTTGCACAATGCAGGAACTGCGACTTTGAGAGGGCACAAAAATCTGGCCGGAGGAAAAAGGATTGACATCGGACTATGGGATGGTAGCAAAGAATTTTTCCATGAGTATTGCTATTTGCCCGATGACGTCCAAATAAGACTTTTTATAAGCAAAATTCAACTTCTTCACTTTGTCGTAGGGGCTATAACGACTCCACAATATGTTGAAAAGGTTGCGTTATTGGGAAAAGTTGTTGGCAGTTCCCGGTACTTGGAGCTGCTCCGTTCTTTTATCGACTTAAACGACCCAAGTGGGAAAAATTATTCTCGTGGATTATTTTTCTATGACCATAAATTTGACAAACTGGAAGAGGTGGGAAAAGAGGTGGGAGAAAACTTGCCGGAAGTCATCAAGAGGTTTTTCCCCGACAAATGGGTCTTAGTGGATGTTTGGGCCACGTGGTGCTCACCATGTAAAAAAGAATTTGGGTATAACAAACAACTACATGCCTTCTTGGAAGAAAAAGGAATTGCCATGCTCTATTGCTCCGTTGATGAACCGGAAAACTCTGACAACTGGAGAAACAATCTTTCCGCATTTGGTTTGACCGGATACCACTATTACATTACATCAAAGGCTGAAAAAGAATTGCTGAAAATACCTGATTTCCGAATGTTAATTCCTCGTTATCTTCTATTTGACAATAAGGGGAAACTTGTTCACGCCAATCTGCCCCGCCCTTCTTCAGAGAAAGCACTTTACGAAGAGATAGAGAAGTTGATGCAAGGAAAT","6.50","-2.23","38848","MLDMELESFLSMEKQGDISDAFLSAVKAEMQQMVLYAAGLAVRNIEETNRLRQKAKELYFYYLERYSPLAEMYKGSEMSLHNAGTATLRGHKNLAGGKRIDIGLWDGSKEFFHEYCYLPDDVQIRLFISKIQLLHFVVGAITTPQYVEKVALLGKVVGSSRYLELLRSFIDLNDPSGKNYSRGLFFYDHKFDKLEEVGKEVGENLPEVIKRFFPDKWVLVDVWATWCSPCKKEFGYNKQLHAFLEEKGIAMLYCSVDEPENSDNWRNNLSAFGLTGYHYYITSKAEKELLKIPDFRMLIPRYLLFDNKGKLVHANLPRPSSEKALYEEIEKLMQGN","2141708 2140194","TIGR ID: PG2042","hypothetical protein","Cytoplasm, Inner membrane","No significant hit found in gapped BLAST.","
InterPro
IPR000866
Domain
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
PF00578\"[214-267]TAhpC-TSA
InterPro
IPR006662
Domain
Thioredoxin-related
PR00421\"[218-226]T\"[226-235]TTHIOREDOXIN
InterPro
IPR012335
Domain
Thioredoxin fold
G3DSA:3.40.30.10\"[213-313]TThioredoxin_fold
InterPro
IPR012336
Domain
Thioredoxin-like fold
SSF52833\"[201-334]TIPR012336


","BeTs to 11 clades of COG0526COG name: Thiol-disulfide isomerase and thioredoxinsFunctional Class: O,CThe phylogenetic pattern of COG0526 is AMTkYQVCEBRHUJgpoLINXNumber of proteins in this genome belonging to this COG is 7","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 12:58:42 MDT 2001","","Thu Jun 14 12:58:42 MDT 2001","Thu Jun 14 12:58:42 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:58:42 MDT 2001","Thu Jun 14 12:58:42 MDT 2001","","","Wed Mar 7 15:29:33 MST 2001","Mon Jun 25 13:32:40 MDT 2001","Wed Mar 7 15:29:33 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 7 15:29:33 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jun 25 13:32:40 MDT 2001","34541629","","","","","","1","","","PG2042" "PG1783.1","2081558","2081280","279","TTGCATTGGAATGTTTCCTTAGTACCGGCGGCAGACACCGGTGTCGGCCGTGATTACTTAACAAAGTTAGCAACTTTCGGTTTTGGCATCTATGGAGCTTGGCAGGGGATGAGCGGTATTTGTCTCGGAATCAAGCTCCCCAAAGTTCATTTCGCGTGGAGACGCATCATTTCGTGCGCTATCGTATTAAGAGAGAAGGACGGGTTTACGCGCCATAATTTTCTATTTCCACGCTCTGAAAAACGTGGCGCGGGAACTTTTTCGTTTTGGTTCGGGAAG","","","10462","LHWNVSLVPAADTGVGRDYLTKLATFGFGIYGAWQGMSGICLGIKLPKVHFAWRRIISCAIVLREKDGFTRHNFLFPRSEKRGAGTFSFWFGK","","","hypothetical protein","Cytoplasm","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
tmhmm\"[24-44]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Thu Feb 15 13:58:35 MST 2001","","Thu Feb 15 13:58:35 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG1784","2142361","2143452","1092","ATGATCATTCAGGATATTATAGAGGCTATCGAGGCGGTCTGCCCGAGGGCTTATCAAGAGAGCTATGACAATAGTGGCGTGCAGGTGGGCGACACCAAGCGGGAGGCAACGGGTGCCCTCCTCTGTGTGGATGTTACCGAAGCGGTATTGGAGGAGGCCATTCGGCTGGGATGCAATCTCGTCATTGCCCACCATCCGATTCTTTTCAAACCGCTCAAGCGATTGACCGGCAGCTCCTACGTGGAGCGATGCGTGGAGCTGGCCGTACGGCACGGTCTGGTGCTATATGCGGCTCATACCAATGCGGACAACGCTCCGCAGGGACTGAATGCGCTGCTGGCCGAACGCTTCGGCTTGCTGAATACGCGACCGCTGGAGCCGCTGCAAGGCAAGCTCTTAGAACTGGTCACCTTCGTCCCCACGGAGTATGCCGATGCCGTGAGGCAGGCTTTGTGGCAGGCCGGTGCAGGCCGTTTGGGGCATTACGATTGCTGTTCGTTCAGCCATGCCGGCACAGGGACTTTCAGAGCTGCCGAGGGTGCCAATCCCTTTGTGGGAGCGATAAGCGAATTGCACCATGAGGCGGAGGAGCGGATCAGCCTCGTACTGCCGGCATACAGGCAGGGTACTGTGCTGCAGGCTTTGCACGCGGCTCATCCGTACGAGCTGCCGGCTGTCAGCCTGATCCCGCTGGCCAACGATCATCCCTCGGCCGGAGGCGGAATAGTGGGGGATCTGCCTTCGCCCATAAGCGAGCGGGAGATGCTGCTGCACATCAAGGAGGTATTCGGTCTGAAGGTCCTGTCCCATTCGGCTTGGAGGGAACGGCCGTTGAGGCGGATGGCTATATGCGGCGGTAGCGGTGCTTTCATGTGGCGGCGTGCAGCACAGGAGGGTGCAGACCTCTTCCTGACAGGGGAGGCGAAGTACAACGACTTCTTCGATGCAGGGGAGCATCTGCTGCTGGTTACGATCGGTCATTACGAGAGCGAAGAGGTGGCTAATGAGCTATTTATGCGCATAATATCGCAGAAATTCCCTACCTTTGCCACCCACAAATCATCGGTTGCAACCAATCCGGTAAACTATTTG","6.10","-8.46","39755","MIIQDIIEAIEAVCPRAYQESYDNSGVQVGDTKREATGALLCVDVTEAVLEEAIRLGCNLVIAHHPILFKPLKRLTGSSYVERCVELAVRHGLVLYAAHTNADNAPQGLNALLAERFGLLNTRPLEPLQGKLLELVTFVPTEYADAVRQALWQAGAGRLGHYDCCSFSHAGTGTFRAAEGANPFVGAISELHHEAEERISLVLPAYRQGTVLQALHAAHPYELPAVSLIPLANDHPSAGGGIVGDLPSPISEREMLLHIKEVFGLKVLSHSAWRERPLRRMAICGGSGAFMWRRAAQEGADLFLTGEAKYNDFFDAGEHLLLVTIGHYESEEVANELFMRIISQKFPTFATHKSSVATNPVNYL","2142273 2143451","TIGR ID: PG2043","conserved hypothetical protein","Cytoplasm","Residues 4-364 have 34% similarity to AP001511, B. halodurans BH1380 unknown conserved protein.Residues 4-364 have 32% similarity to Z99116, B. subtilis hypothetical proteins.Residues 10-325 have 31% similarity to U17284, L. monocytogenes hypothetical protein.This sequence is similar to BT0882.","
InterPro
IPR002678
Family
NGG1p interacting factor 3, NIF3
PTHR13799\"[1-246]T\"[286-342]Tinteracting_NIF3
PF01784\"[10-355]TNIF3
TIGR00486\"[1-350]Tinteracting_NIF3
noIPR
unintegrated
unintegrated
SSF102705\"[1-360]TSSF102705
SSF54913\"[152-237]TSSF54913


","BeTs to 11 clades of COG0327COG name: Uncharacterized ACR, YbgI/Acr familyFunctional Class: SThe phylogenetic pattern of COG0327 is amtky---ebrhuj--olin-Number of proteins in this genome belonging to this COG is 1","***** PF01784 (Domain of unknown function) with a combined E-value of 1.6e-11. PF01784A 88-111 PF01784B 157-194","Residues 11-119 are 38% similar to a (PROTEIN CONSERVED NGG1-INTERACTING FACTOR ACR FAMILY) protein domain (PD003720) which is seen in YQFO_BACSU.Residues 3-130 are 34% similar to a (PROTEIN RV2230C) protein domain (PD037766) which is seen in O69481_MYCLE.Residues 25-135 are 31% similar to a (CONSERVED HYPOTHETICAL PROTEIN) protein domain (PD179982) which is seen in O83942_TREPA.Residues 136-222 are 48% similar to a (PROTEIN YQFO CCCA-SODA INTERGENIC) protein domain (PD013659) which is seen in O69481_MYCLE.","","Thu Jun 14 12:58:52 MDT 2001","","Thu Jun 14 12:58:52 MDT 2001","Thu Jun 14 12:58:52 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:58:52 MDT 2001","Thu Jun 14 12:58:52 MDT 2001","","","Wed Mar 7 15:35:42 MST 2001","Wed Dec 3 09:49:02 2003","Wed Mar 7 15:35:42 MST 2001","Mon Jun 25 13:29:52 MDT 2001","Mon Jun 25 13:29:52 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 7 15:35:42 MST 2001","-55% similar to PDB:2GX8 The Crystal Stucture of Bacillus cereus protein related to NIF3 (E_value = 1.2E_57);-50% similar to PDB:2NYD Crystal structure of Staphylococcus aureus hypothetical protein SA1388 (E_value = 2.8E_46);-52% similar to PDB:2FYW Crystal structure of a conserved hypothetical protein from Streptococcus pneumoniae TIGR4 (E_value = 5.8E_15);","","","Residues 10 to 355 (E-value = 6.8e-64) place PG1784 in the NIF3 family which is described as NIF3 (NGG1p interacting factor 3) (PF01784)","Mon Jun 25 13:29:52 MDT 2001","34541630","","","","","","1","","","PG2043" "PG1785","2143473","2144225","753","ATGGCTAAAGAAAAGATCATCGTTGAGAACGAACAGAGCGTAGAGGAAAAATTGGCAGCACTGAGCAAGCTGCAAAATACCCTCTCTGAAATAGATAAGATCAAGACTCTCCGTGGCGAATTGCCGCTGGAAGTACAGGATCTGGAAGACGAAATCGCCGGAATGCAGACTCGTTTGGAGAACTTCACAGCCGGATCCAAGCAGCTCAATCAGGCTGTAACCACCGAAAAGGAAAAGATCAGTACAGCCAAGACGCTGCTGGAGAAATATAAAAAACAGCTCGACGAGGTGCGCAACAATCGTGAGTTCGACAATCTCTCCAAAGAGATCGAATTTCAGGAGCTGGAGATCCAACTGTCTGAAAAGAAGATCAAGGAATACAACGTCGAAATCCAACAGCGCAAGACCGATATAGCTACTCTGAAAGAGGTGCTGGAAGAGCATAGCGAGGTGTTGGCCGAAAAACGCGGCGAACTGGATACCATCATTGCCGAGACTAAGCAAGAGGAAGAGAAACTGCGCGAAAAGGCGAAGAAGCTCGAAGCCAAGATCGAACCGCGCCTGCTGACGGCTTTCAAGCGCATCAGAAAGGCTGCGCACAACGGCTTGGCCGTGGTGCCCGTAGAGCGTGATGCTTGCGGCGGTTGCTTCAACAAGATTCCTCCTCAGAAGCAGCTGGACGTCAAGCTTCGGAAAAAAATCATCGTCTGCGAATACTGCGGACGAATCATGGTCGATCCCGAAATGGGAGCA","5.80","-2.67","28802","MAKEKIIVENEQSVEEKLAALSKLQNTLSEIDKIKTLRGELPLEVQDLEDEIAGMQTRLENFTAGSKQLNQAVTTEKEKISTAKTLLEKYKKQLDEVRNNREFDNLSKEIEFQELEIQLSEKKIKEYNVEIQQRKTDIATLKEVLEEHSEVLAEKRGELDTIIAETKQEEEKLREKAKKLEAKIEPRLLTAFKRIRKAAHNGLAVVPVERDACGGCFNKIPPQKQLDVKLRKKIIVCEYCGRIMVDPEMGA","2143463 2144224","TIGR ID: PG2044","conserved hypothetical protein","Cytoplasm, Extracellular","Weak hits to hypothetical proteins with gapped BLAST; e.g. residues 18-244 are 21% similar to hypothetical protein HP0958(AE000604) of Helicobacter pylori, residues 12-244 are 25% similar to hypothetical protein ct398 (AE002183) of Chlamydophila pneumoniae, residues 12-249 are 22% similar to hypothetical protein CT398 (AE001313) of Chlamydia trachomatis.","
InterPro
IPR003743
Family
Protein of unknown function DUF164
PF02591\"[188-244]TDUF164
InterPro
IPR010978
Domain
tRNA-binding arm
SSF46589\"[33-97]TtRNA_binding_arm


","BeTs to 5 clades of COG1579COG name: Uncharacterized ACRFunctional Class: SThe phylogenetic pattern of COG1579 is -----q------uj--olin-Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 9-158 are 22% similar to a (PROTEIN COILED COIL REPEAT FILAMENT HEPTAD PATTERN CHAIN) protein domain (PD000002) which is seen in O40947_KSHV.","","Thu Jun 14 12:59:19 MDT 2001","","Thu Jun 14 12:59:19 MDT 2001","Thu Jun 14 12:59:19 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:59:19 MDT 2001","Thu Jun 14 12:59:19 MDT 2001","","","Wed Mar 22 11:22:22 MST 2000","Mon Jun 25 13:26:19 MDT 2001","Thu Jun 14 12:59:19 MDT 2001","Wed Apr 19 09:24:32 MDT 2000","Mon Jun 25 13:26:19 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Wed Apr 19 09:24:32 MDT 2000","Thu Jun 14 12:59:19 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 14 to 248 (E-value = 4e-16) place PG1785 in the DUF164 family which is described as Uncharacterized ACR, COG1579 (PF02591)","Mon Jun 25 13:26:19 MDT 2001","34541631","","","","","","1","","","PG2044" "PG1786","2144492","2145853","1362","ATGAAGATTTCCCTGACAAACCGTGTCCGAACGACGATCAGAGAGCGGAAGCTCTTCCGAGAAGGAGACCGCCTCGTACTGGTCGCTCTCAGCGGAGGTGCCGACTCGGTGGCTCTGCTCTGCGTATTGCGCGAATTGGGGTATGAGACGGTGGCGGCACACTGCAATTTTCACCTCCGAGGGGTAGAGAGCGATGAGGATGCAGCTTTCGTGGAGCGCCTATGCCGAGATCTGGATGTTCCGCTCCATCGGATCGACTTCGACACGGTTCGTTATGCTCGCGAGCGGTCGATTTCGATCGAGATGGCTGCTCGAGAACTGCGTTACGAATGGTTCGGACAGTTGCGGAAAGAACTGGCTATCGAATACGTGGCGGTGGCGCACCATGCCGACGATAATGCCGAAACCATGGTGCTGAATCTCTGTCGAGGAACGGGAATCAGCGGCCTGTGCGGGATGCCCTATAAGCGGAACGATGGTATCGTGCGCCCCCTGCTGGATGCCACACGGGATGAGATAGAGGCTTATCTGCTCGACCAAAAAATCACCTATCGTACGGACTCTTCCAATGAGGATACGCGCTTCCGGCGCAATCTGGTCAGACACCGGATCATGCCGCTATTAAAGGAGTTGAATCCGTCGCTTCAGGAGGCGTTGCTACGCACTCGGGAGAATCTGGAGGGCGTTGCAGCTTTTTACTCGAAGGCAACGGAGGATTTTCACAATACATTGAGAGCAACCTCTTCGATAAGCATTCGGGAGGTCAAAGAAACACCTGCTCCGTTTACGCTGCTGTACGATCTGCTGCATCCGTACGGGTTCAACAGGGATCAGATACGGGAGGTGGCCACGTCTTTGGACAATCCTCCCGGAGCTTCTTTTTTCTCTTCTTCGCATCGTCTCTTACGTGAGAGGGATCGGCTTACAGTACTTCCCTTATCGCCAAAGATGGAGGTGCCGGAACTGTTCGGCCTTAAAATCGGAGATTCTTTCCTCGATCTGCCGGATGGAAAGCAACTGAGTTGGCAGCGCGGTACTCCTGCCGATTTGGACTTGGAGGGTCTGCGGCTTCCGAATACCAAGCTATTGTTGCCTTTGGCATTTGTAGAATCTTTACAGGAGGAGCTTGGGGTTCGCCGTCCGCAACGAGGGGATCATATTCATCCTTACGGGATGAAAGGCTGCAAGACGGTGAGCCGTTTCTTTATCGATCGTCACGTGCCACGAAGCCGGAGGGAAGAGGCTTGGCTCCTTTGCCAAGGAACAGAAGTGGTATGGATCATGGGCTATGCGGCTGATCGGCGATTCGCCATCGATGAGCTGTCGGATACGGAAGAATATCTGCTCTTCTCTTTCGGGCTA","6.50","-3.39","52055","MKISLTNRVRTTIRERKLFREGDRLVLVALSGGADSVALLCVLRELGYETVAAHCNFHLRGVESDEDAAFVERLCRDLDVPLHRIDFDTVRYARERSISIEMAARELRYEWFGQLRKELAIEYVAVAHHADDNAETMVLNLCRGTGISGLCGMPYKRNDGIVRPLLDATRDEIEAYLLDQKITYRTDSSNEDTRFRRNLVRHRIMPLLKELNPSLQEALLRTRENLEGVAAFYSKATEDFHNTLRATSSISIREVKETPAPFTLLYDLLHPYGFNRDQIREVATSLDNPPGASFFSSSHRLLRERDRLTVLPLSPKMEVPELFGLKIGDSFLDLPDGKQLSWQRGTPADLDLEGLRLPNTKLLLPLAFVESLQEELGVRRPQRGDHIHPYGMKGCKTVSRFFIDRHVPRSRREEAWLLCQGTEVVWIMGYAADRRFAIDELSDTEEYLLFSFGL","2144491 2145852","TIGR ID: PG2046","conserved hypothetical protein (potential cell cycle protein)","Cytoplasm","Numerous significant hits using gapped BLAST to cell cycle proteins and hypothetical proteins from, e.g., Heliobacillus mobilis (gi: 3820563), Bacillus subtilis (gi: 2632334 and 586892), Aquifex aeolicus (gi: 6016543), E. coli (gi: 1708989), among others.This protein is similar to CT840, a putative conserved hypothetical protein (possible PP-loop ATPase) from Chlamydia trachomatis.","
InterPro
IPR011063
Domain
PP-loop
PF01171\"[25-203]TATP_bind_3
InterPro
IPR012094
Family
Cell cycle control PP-loop ATPase MesJ/YaeO
PIRSF006290\"[6-454]TMesJ_YaeO
PTHR11807:SF2\"[33-438]TATPase_MesJ_YaeO
InterPro
IPR012795
Domain
tRNA(Ile)-lysidine synthetase, N-terminal
TIGR02432\"[25-206]Tlysidine_TilS_N
InterPro
IPR012796
Domain
tRNA(Ile)-lysidine synthetase, C-terminal
TIGR02433\"[376-422]Tlysidine_TilS_C
InterPro
IPR014729
Domain
Rossmann-like alpha/beta/alpha sandwich fold
G3DSA:3.40.50.620\"[11-186]TRossmann-like_a/b/a_fold
noIPR
unintegrated
unintegrated
G3DSA:2.60.280.10\"[353-440]TG3DSA:2.60.280.10
PTHR11807\"[33-438]TPTHR11807
SSF52402\"[10-236]TSSF52402
SSF82829\"[372-439]TSSF82829


","BeTs to 16 clades of COG0037COG name: Predicted ATPases of the PP-loop superamilyFunctional Class: RThe phylogenetic pattern of COG0037 is AMTKyQVcEbrHUJgpolINxNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 107-208 are 44% similar to a (PROTEIN CONSERVED PUTATIVE CELL CYCLE MESJ PP-LOOP) protein domain (PD003493) which is seen in Q9ZGE2_HELMO.Residues 26-106 are 34% similar to a (PROTEIN YACA SPOIIE-HPT INTERGENIC REGION TP0373) protein domain (PD034780) which is seen in YACA_BACSU.Residues 26-82 are 54% similar to a (PROTEIN SYNTHETASE LIGASE BIOSYNTHESIS PROBABLE) protein domain (PD000352) which is seen in Q9ZGE2_HELMO.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon Apr 10 12:55:33 MDT 2000","Fri Apr 7 14:03:46 MDT 2000","Thu Feb 22 19:28:11 MST 2001","","Thu Feb 22 19:28:11 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Fri Apr 7 14:03:46 MDT 2000","Thu Mar 30 16:41:06 MST 2000","-52% similar to PDB:1WY5 Crystal structure of isoluecyl-tRNA lysidine synthetase (E_value = 4.1E_29);-50% similar to PDB:1NI5 Structure of the MesJ PP-ATPase from Escherichia Coli (E_value = 3.9E_19);","","","Residues 25 to 225 (E-value = 1.6e-70) place PG1786 in the ATP_bind_3 family which is described as PP-loop family (PF01171)","Thu Feb 22 19:28:11 MST 2001","34541632","","","","","","1","","","PG2046" "PG1786.1","2124546","2124821","276","ATGGAAAAGTCGTTTCATCCTTTTGATATGAGTCCGGTCTGCGAAGATTGCCTCCTTTGCCTTGTGTGCCATGAACTTCCTGTAGGTGCCGATAGGTCTCTTAAGAAAGTCTCACCTACTAAGCCAATCAGCTCCTCGATGAGCGTACCATATCTTTTAACCTCTGATATAAGGATGAACCGTTGGACTACGGATATTCTCTCTCTGATTTCAGGTAAAACCTGTCTCTTCGATGAATTACGAACCGAAAATGCTCGGATTGTGGTCTGTAAATCC","","","10319","MEKSFHPFDMSPVCEDCLLCLVCHELPVGADRSLKKVSPTKPISSSMSVPYLLTSDIRMNRWTTDILSLISGKTCLFDELRTENARIVVCKS","","","hypothetical protein","Periplasm, Cytoplasm","No hit found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","-49% similar to PDB:1EG3 STRUCTURE OF A DYSTROPHIN WW DOMAIN FRAGMENT IN COMPLEX WITH A BETA-DYSTROGLYCAN PEPTIDE (E_value = );-49% similar to PDB:1EG4 STRUCTURE OF A DYSTROPHIN WW DOMAIN FRAGMENT IN COMPLEX WITH A BETA-DYSTROGLYCAN PEPTIDE (E_value = );","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG1786.2","2124949","2124563","387","TTGCGTTTTGGTTCGGGAAATTACCTGATCAGCATTCGTAAAAACGTGGCGCGAGAATTTTTTCGTTTTGGCGCGAGAATTAAAATTTTTTGGAACCACAGCGAAAAAAATCTCGCGCCGTTTTCTCAGGATTTACAGACCACAATCCGAGCATTTTCGGTTCGTAATTCATCGAAGAGACAGGTTTTACCTGAAATCAGAGAGAGAATATCCGTAGTCCAACGGTTCATCCTTATATCAGAGGTTAAAAGATATGGTACGCTCATCGAGGAGCTGATTGGCTTAGTAGGTGAGACTTTCTTAAGAGACCTATCGGCACCTACAGGAAGTTCATGGCACACAAGGCAAAGGAGGCAATCTTCGCAGACCGGACTCATATCAAAAGGA","","","14881","LRFGSGNYLISIRKNVAREFFRFGARIKIFWNHSEKNLAPFSQDLQTTIRAFSVRNSSKRQVLPEIRERISVVQRFILISEVKRYGTLIEELIGLVGETFLRDLSAPTGSSWHTRQRRQSSQTGLISKG","","","hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Thu Mar 8 09:27:42 MST 2001","","Thu Mar 8 09:27:42 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No significant paralogs found using local BLAST search.","Thu Mar 8 09:27:42 MST 2001","Thu Mar 8 09:27:42 MST 2001","-51% similar to PDB:1SLQ Crystal structure of the trimeric state of the rhesus rotavirus VP4 membrane interaction domain, VP5CT (E_value = );-49% similar to PDB:1CQX Crystal structure of the flavohemoglobin from Alcaligenes eutrophus at 1.75 A resolution (E_value = );-42% similar to PDB:1I3Q RNA POLYMERASE II CRYSTAL FORM I AT 3.1 A RESOLUTION (E_value = );-42% similar to PDB:1I50 RNA POLYMERASE II CRYSTAL FORM II AT 2.8 A RESOLUTION (E_value = );-42% similar to PDB:1I6H RNA POLYMERASE II ELONGATION COMPLEX (E_value = );","","","No significant hits to the Pfam 11.0 database","Thu May 17 17:09:49 MDT 2001","","","","","","","1","","","" "PG1787","2148136","2145854","2283","ATGAACACAAAAGAATATGTGCTGGACTTTATCAACCGCACGAACTGTAACCTTTTCCTTACCGGCAATGCGGGCACAGGCAAAACGACCCTGCTGCGCCATATAGTCCAACACACATTCAAAAACTGCATAGTAGCCGCTCCCACCGGAATAGCAGCGTTGAATGCCGGTGGGGTGACGCTGCATTCGCTTTTACAGCTTCCGCCGGGAACATTCATTCCGTACGGGCTATCTCTCGAAAGTGCAACGGGCGTAAACTTCCTTACGCCAACTTCTTTTTGGAAACAGACACGTATGCATGCTTCGAAGCGCAAATTGCTTCGAAACATGGAGTTGCTCATCATCGACGAAGTCAGCATGCTCCGTGCCGACACGCTGGATCTGATCGATTTTGTTCTTCGTCGCGTGCGGAGCAATCCCCGATCTTTCGGTGGAGTACAAGTCCTGTTTATCGGTGATCTTATGCAGCTTCCGCCGGTAGTCAAACCGCATGAATGGGAGCTAATGTCAGCAATCTATCAAGGCGTTTTCTTTTTTCATTCCATGGTGATTCGTCAGCATCCGCCGGTATTCCTCGAACTGGAAACCATATACCGGCAGACAGATGTACGCTTTACGTCCTTGCTGAACAACCTGCGCCACAATCGTCTGCCGGCAGACGACTTGACCTACCTGAAGGATCATGTGAATCCGACTTTCGACAGCACCTGTCACGAAGGCTATATTACGCTGACAACGCATAACCACAAAGCCGATCAGATCAATCGACGCGCTTTGGAAGCCTTACCTGCACTGCCCCATTCCTACCAAGCGATCATCAAGGGCGATTTTCCGGAACATCTGTATCCTTTGGAGCCGACGATGACGTTGAAAGAAGGTGCCAGAGTGATGTTCGTTCGCAATGATACTCGCCAACCTAGACGCTACTACAACGGGAAAATAGCCGTAGTCCACTCCCTTTCTCCTTCCTCGGTGGTCGTTCGGACTGACGGCGGAGAGCTTATAGAGGTAGAGCCACACGAGTGGACCAACGTCCGCTACTCCGTGAACCCCGAGACCAATGCCCCCGAACAGGAAGTAATCGGCAGCTTCCGCCTTTTTCCGCTTCGAGCCGCTTGGGCTATCACCGTGCACAAGAGCCAAGGACTGACTTTCGAACACGCCGCCATAGATCTGGAAGGTGTCTTCGTTCCCGGTCAGGCCTACGTAGCCCTGTCACGTATGACGGGCCCTGAAGGAATGATACTGCTCTCCCCTCCCGATCTGCGTGGGTTGGAAACTCCCCAAGAACTGGTCGAATATGCACAGACGAAGCCCGACGAAAAAGAACTCCGGACTTCTTTGCAGGAAAACAGTCTTATCTATTGGAAGCAGCAATCCGACGAGGCTTTCGACTGGCAGAGCTTGTTGAATATATGGCACAAACACAGTCTCAGCTATCGGGAGGAGAGCGAGCTGAGCAGCAAAAGCCATTACAGCGATAGAGCAGCCGAACAATCGGCCAAGATAGATGCGATCACGGAAGTAGCCGGACGTTTTCGCCGGCAACTTGCCGGCCTTTGGGGGCAGTCTCCGCTTGGATTCGGTGCCGTCAAAGAGCGAATCGACAAAGCCGTGGACTATTTCCTGCCACAACTTTCTGCCATAGCAGGCGAACTTTCCTCCACGATCCAAGAAGTCGGAATGCTGAAAAAAGCCAAACAGTTTGCGAAAGAACTGCTCGAGCTACAGGACAATCTTCATACCGCCGTGTACCGCCTGCTTCGCTTACGAGCCGTTTTCGGTGCTCTCTCTGTCGGCCAAAGCCTCAGCAGACAGGAACTTCGGACGGAAGAGCTGATGGCCGAATGGGTACGCAGCATTTCACCCAAGGACGAAGCCCTGCCAACAGCCGCCGGCAATCGAAAGAGTAAAGAGAAAAAAGCCAAGGAAAAGAAAAAGACTACCCACGAGACAACGCTCGAATTGCTACTGGCAGGTATGAGCATAGAAGAGGTCGCTACCGAGCGGAAACTCAGTCCGAGTACCATCGAAGGGCACCTTGCCCTTTTGATAGAGAAAGGACGATTGGCTCCCGATGCCTATATAGATGCAGGTATCGTTTCCGAATTACACCCCTATTTCACCAATCCCGCTCGCATATTCGAACTCAAATCCTTGTATGAACGTCTCAATGGACAGTATTCCTATACCCTACTCCGCCTTTACCGTGCTTATTTTATCCTGATGGATGCGAAGGAGAAAGGCTCCCGGGCAAGAGAAAAAGCCATCGAGCAAGCTCTA","8.10","6.96","86134","MNTKEYVLDFINRTNCNLFLTGNAGTGKTTLLRHIVQHTFKNCIVAAPTGIAALNAGGVTLHSLLQLPPGTFIPYGLSLESATGVNFLTPTSFWKQTRMHASKRKLLRNMELLIIDEVSMLRADTLDLIDFVLRRVRSNPRSFGGVQVLFIGDLMQLPPVVKPHEWELMSAIYQGVFFFHSMVIRQHPPVFLELETIYRQTDVRFTSLLNNLRHNRLPADDLTYLKDHVNPTFDSTCHEGYITLTTHNHKADQINRRALEALPALPHSYQAIIKGDFPEHLYPLEPTMTLKEGARVMFVRNDTRQPRRYYNGKIAVVHSLSPSSVVVRTDGGELIEVEPHEWTNVRYSVNPETNAPEQEVIGSFRLFPLRAAWAITVHKSQGLTFEHAAIDLEGVFVPGQAYVALSRMTGPEGMILLSPPDLRGLETPQELVEYAQTKPDEKELRTSLQENSLIYWKQQSDEAFDWQSLLNIWHKHSLSYREESELSSKSHYSDRAAEQSAKIDAITEVAGRFRRQLAGLWGQSPLGFGAVKERIDKAVDYFLPQLSAIAGELSSTIQEVGMLKKAKQFAKELLELQDNLHTAVYRLLRLRAVFGALSVGQSLSRQELRTEELMAEWVRSISPKDEALPTAAGNRKSKEKKAKEKKKTTHETTLELLLAGMSIEEVATERKLSPSTIEGHLALLIEKGRLAPDAYIDAGIVSELHPYFTNPARIFELKSLYERLNGQYSYTLLRLYRAYFILMDAKEKGSRAREKAIEQAL","2148135 2145853","TIGR ID: PG2047","helicase-related protein","Cytoplasm","Several hits in gapped BLAST to eukaryotic helicases, e.g. residues 7-407 are 45% similar to residues 253-622 of the PIF1 protein of Caenorhabditis elegans (AB015041).This sequence is similar to BT0721.","
noIPR
unintegrated
unintegrated
PTHR23274\"[17-464]TPTHR23274
SSF46785\"[647-688]TSSF46785
SSF52540\"[11-407]TSSF52540


","BeTs to 6 clades of COG0507COG name: ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I memberFunctional Class: LThe phylogenetic pattern of COG0507 is -m--Y---ebrh----o-IN-Number of proteins in this genome belonging to this COG is 3","No significant hit to the Blocks database.","Residues 17-160 are 37% similar to a (HELICASE PROTEIN ATP-BINDING DNA DNA-BINDING) protein domain (PD000627) which is seen in PIF1_YEAST.Residues 330-418 are 41% similar to a (PROTEIN HELICASE PIF1 ATP-BINDING) protein domain (PD008646) which is seen in O74239_SCHPO.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Jan 10 13:34:08 MST 2001","Wed Dec 3 09:03:19 2003","Thu May 17 17:36:11 MDT 2001","","Thu May 17 17:36:11 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1787 is similar to PG0053, a predicted helicase; residues 6-448 are 57% similar to PG0053.","Tue Jun 5 13:26:44 MDT 2001","Thu May 17 17:36:11 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu May 17 17:36:11 MDT 2001","34541633","","","","","","1","","","PG2047" "PG1788","2148607","2148230","378","TTGTCGCGCAAACCGATAATAGAAATAGATATGCGAGCATATTACGAACTGAAGCGTCGTCGAGACGCATGCGATAAGGAAGCAGAACGATACCAGAAGGACATCTTTCGCTGTTTGGATCATGTACGCAACAATTATGGCGACATGATTTTCGAAGAAGTTGAGACCCATCTGATCTATCCTGGCAGCCTTGGCAATAAGATACTTCGCTTCCTCATCGGCAAGAAGCAGATCTCTTCATCCAAGCTAATGACTCCGACAGGCCGGCCGACTCTCCATCTGATCGAGCAGCTTACCGACTTCGGCCGTCCTTTGCTGATCAGTGCCTTGCTTGGCTTTGTTAAGCGTAGCATCGTTCGCCGTTTCCGCAGGCGTCGA","11.00","12.62","14978","LSRKPIIEIDMRAYYELKRRRDACDKEAERYQKDIFRCLDHVRNNYGDMIFEEVETHLIYPGSLGNKILRFLIGKKQISSSKLMTPTGRPTLHLIEQLTDFGRPLLISALLGFVKRSIVRRFRRRR","2148606 2148229","TIGR ID: PG2048","hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541634","","","","","","1","","","PG2048" "PG1789","2148997","2148623","375","ATGCTCAAACGACTAATAGAAGATATATATAGCTATTTGACACTTCGGACCGAAAGCATAGCATATACGATAGCCGAAGAAGGAGCTCGATTGATCGCCAAATTGGCTCTGCTGGCTATGTCTGTTCTTATGTCATTCCTGATACTGATATTCTTGAGCATAGCTTTAGGATTCGGCTTTGGGCGGTGGCTCGGGATAGGAGCTACGGGAGGCTTTTTCGTTGTAGTAGGGATTTATCTGTTGTTCTTTCTGATCGGATACCTTTGTCGGCATCTGATCAGAAGATATATCCTCGGACGGCTGGCCGGAGAGGTACTGGAAATTGTAGCCCGCCATCAAAGAAAAAAAGAAGAGGATGAAGGGCCGACAAATAAG","10.20","4.42","14111","MLKRLIEDIYSYLTLRTESIAYTIAEEGARLIAKLALLAMSVLMSFLILIFLSIALGFGFGRWLGIGATGGFFVVVGIYLLFFLIGYLCRHLIRRYILGRLAGEVLEIVARHQRKKEEDEGPTNK","2148996 2148622","TIGR ID: PG2049","hypothetical protein","Inner membrane, Cytoplasm","This sequence corresponds to gi:34397953 in Genbank.","
noIPR
unintegrated
unintegrated
signalp\"[1-61]?signal-peptide
tmhmm\"[38-60]?\"[66-86]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","Wed Mar 9 14:43:24 2005","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 9 14:43:24 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541635","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Wed Mar 9 14:43:24 2005","","1","","","PG2049" "PG1790","2149527","2149255","273","ATGAGCTCACAAGGAAAGTTTTCTCTCGGTCTGTTAGTGGGCCTTGCTATTGGGGCTGCCGCTGCTTATTTCGCTGATCGTGAAAAGCGTACTCGCTTCGTTGAAGACATCAACAGTACAGCCGACAAAGTAAAGGATAGCGTGGTGGAAGGCTATTATGAAGCCAAGAATCGCTACCAGAAGTACCGTAGGAAAATGAAGGGAATCACCGAAGATATGGTGGAAGAGATCGGTGACAAGTACGACGAAGTACTCGACGATCTCAGAAGCGAA","5.00","-2.01","10364","MSSQGKFSLGLLVGLAIGAAAAYFADREKRTRFVEDINSTADKVKDSVVEGYYEAKNRYQKYRRKMKGITEDMVEEIGDKYDEVLDDLRSE","2149526 2149254","TIGR ID: PG2050","hypothetical protein","Cytoplasm, Periplasm","This sequence corresponds to gi:34397954 in Genbank.","
noIPR
unintegrated
unintegrated
signalp\"[1-21]?signal-peptide
tmhmm\"[7-25]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","","Wed Mar 9 14:47:29 2005","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 9 14:47:29 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541636","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Wed Mar 9 14:47:29 2005","","1","","","PG2050" "PG1791","2149779","2150645","867","ATGGGGGTTGCCCTGATTACCCCTTTCGACGAAAAGGGCGGGGTAGACCACGAATCGCTTCGACTTTTAGCGGATTATCAGGTAGCGGGAGGTGCCAACTACATCGTAGTACTTGGCACAACGGGTGAATCGCCCACCATCGAGGATGCCGAGCGCTCTGCGATATTGCAAACAGTCAGAGAGGCGGTGGCAGGACGGTGTCCGATCATCGTTGGAGCCGGAGGCAACTACACCGAACGCCTCGTCAATCGGATTCAAGCCATGGACAAGACCGGTGTAGATGCCATCTTATCCGTTGCTCCTTACTACAACAAACCCACGCAAGAAGGCATTTATAGACATTATAGGACTTTGGCCGAATCTACTGATACGTCCATCATCCTCTACAATGTCCCCGGGCGAACGGGTGTGAATATTAAGTCCGAAACCACTCTCAGATTGGCTACAGACTGTCCGAATATCATCGGCATCAAAGAAGCTTCGGGCAATGTGGATCAAGTGCGTGCAATAGTGCTGGAAAAACCCGATCCTTTCATTGTCCTATCAGGCGACGATCATCTCTCCCTTTCCTTTATAAAGGAAGGAGCCGAGGGAGTTATTTCCGTGATCGGAAATGCCTATCCGGAGCTTTTCAGTCGTTTGATACATCTGTGTTTGGAAAACCGATTTGAAGAAGCCGAAACCATCCAACAACGACTGGAAGGAATGTACTACCTGATGTTTGTCGATGGTAATCCGGCCGGAATCAAGGAATTGCTCTATCAAAAGGGTCTCATCCGTCACAATATACTAAGGCTGCCGCTTGTATCTGCATCGGACTCTACCTCTACTTTGATTGCCAGAGTTCGCAATCAGATCGAACAGCGG","5.20","-6.92","31676","MGVALITPFDEKGGVDHESLRLLADYQVAGGANYIVVLGTTGESPTIEDAERSAILQTVREAVAGRCPIIVGAGGNYTERLVNRIQAMDKTGVDAILSVAPYYNKPTQEGIYRHYRTLAESTDTSIILYNVPGRTGVNIKSETTLRLATDCPNIIGIKEASGNVDQVRAIVLEKPDPFIVLSGDDHLSLSFIKEGAEGVISVIGNAYPELFSRLIHLCLENRFEEAETIQQRLEGMYYLMFVDGNPAGIKELLYQKGLIRHNILRLPLVSASDSTSTLIARVRNQIEQR","2149754 2150644","TIGR ID: PG2052","dihydrodipicolinate synthase","Cytoplasm","Significant hits with gapped BLAST to dihydrodipicolinate synthases; e.g. residues 1-282 are 42% similar to dihydrodipicolinate synthase (AE001799) of Thermotoga maritima, residues 3-2742 are 43% similar to dihydrodipicolinate synthase(AE002444) of Neisseria meningitidis, residues 3-274 are 43% similar to dihydrodipicolinate synthase (D90877) of E. coli, residues 4-268 are 29% similar to dihydrodipicolinate synthase (AE001309) of Chlamydia trachomatis.","
InterPro
IPR002220
Family
Dihydrodipicolinate synthetase
PD001859\"[3-68]TDHDPS
PR00146\"[31-52]T\"[67-85]T\"[99-115]T\"[124-141]TDHPICSNTHASE
PIRSF001365\"[2-288]TDHDPS
PTHR12128\"[3-289]TDHDPS
PF00701\"[3-274]TDHDPS
PS00666\"[129-160]TDHDPS_2
InterPro
IPR005263
Family
Dihydrodipicolinate synthase subfamily
TIGR00674\"[3-286]TdapA
InterPro
IPR013785
Domain
Aldolase-type TIM barrel
G3DSA:3.20.20.70\"[3-285]TAldolase_TIM
noIPR
unintegrated
unintegrated
SSF51569\"[1-286]TSSF51569


","BeTs to 13 clades of COG0329COG name: Dihydrodipicolinate synthetase/N-acetylneuraminate lyaseFunctional Class: E,MThe phylogenetic pattern of COG0329 is amtk-qvcEBrHuj----inxNumber of proteins in this genome belonging to this COG is 1","***** IPB002220 (Dihydrodipicolinate synthetase) with a combined E-value of 1.9e-58. IPB002220A 4-16 IPB002220B 31-52 IPB002220C 66-118 IPB002220D 125-136 IPB002220E 182-208 IPB002220F 229-257","Residues 1-273 are 40% similar to a (LYASE SYNTHASE DIHYDRODIPICOLINATE DHDPS) protein domain (PD001859) which is seen in DAPA_BACSU.","","Thu Jun 14 12:59:31 MDT 2001","","Thu Jun 14 12:59:31 MDT 2001","Thu Jun 14 12:59:31 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:59:31 MDT 2001","Thu Jun 14 12:59:31 MDT 2001","","","Wed Mar 22 10:27:36 MST 2000","Mon Jun 25 13:19:26 MDT 2001","Thu Jun 14 12:59:31 MDT 2001","Mon Jun 25 13:19:26 MDT 2001","Mon Jun 25 13:19:26 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Fri Apr 7 10:42:35 MDT 2000","Mon Jul 28 19:35:50 2008","-63% similar to PDB:1O5K Crystal structure of Dihydrodipicolinate synthase (TM1521) from Thermotoga maritima at 1.80 A resolution (E_value = 2.3E_61);-60% similar to PDB:1DHP DIHYDRODIPICOLINATE SYNTHASE (E_value = 1.2E_57);-60% similar to PDB:1YXC Structure of E. coli dihydrodipicolinate synthase to 1.9 A (E_value = 1.2E_57);-60% similar to PDB:1YXD Structure of E. coli dihydrodipicolinate synthase bound with allosteric inhibitor (S)-lysine to 2.0 A (E_value = 1.2E_57);-60% similar to PDB:2ATS Dihydrodipicolinate synthase co-crystallised with (S)-lysine (E_value = 1.2E_57);","","","Residues 3 to 287 (E-value = 8.6e-87) place PG1791 in the DHDPS family which is described as Dihydrodipicolinate synthetase family (PF00701)","Mon Jun 25 13:19:26 MDT 2001","34541637","","","Richaud F, Richaud C, Ratet P, Patte JC. Chromosomal location and nucleotide sequence of the Escherichia coli dapA gene. J Bacteriol 1986 Apr;166(1):297-300. ","","Fri Apr 7 12:36:11 MDT 2000","1","","","PG2052" "PG1792","2150677","2151327","651","ATGCCCATCATTCCCTCTAAAGTCCTGTTTGTAACCGGAATAGACACGAATATCGGGAAAACCTATGCCACGGCTTTTCTTTTCGACAAGCTCTCCGAGTCAGGGCAAAAGGTCATCACCCAAAAGCTCGTACAGACGGGATGTGTAGGTGCTTCGGAGGATATAGAAGCACACCGTCGTCTGACCGGATACCCTACAATGGAAGAAGATGGTTTGGGACTTACTTGCCCCTATATTTTCAGTTATCCGGCTTCTCCTCACTTTGCAGCCGAGATAGATGGTAAAAGGGTGGACTGCAAGATAATAGACCAAGCTACTGAAACTCTCCTCTCTCGTGGCTACGATCGCATCCTTCTGGAAGGAGCCGGCGGACTGATGGTGCCCATCACCAAGGACTATCTTACAGCTGATTTTATAGCTGACAGAGATTATCCTATTGCACTCGTGACGAGTGGCCGACTGGGGAGTATCAACCACACGCTACTCAATTTGGAATTGTGCCGACACAGAGGTATTCCGGTCGAATCCATTGTCTACAATCTTTATCCTGCCGAAGACGACCGTATTATTGCTAACACCCTTGATTATCTCCGTTTCTATCTGCATAAATATCATCCCGATACGCAACTTATGGTGATGCCGGAACGGAAT","5.40","-5.74","24246","MPIIPSKVLFVTGIDTNIGKTYATAFLFDKLSESGQKVITQKLVQTGCVGASEDIEAHRRLTGYPTMEEDGLGLTCPYIFSYPASPHFAAEIDGKRVDCKIIDQATETLLSRGYDRILLEGAGGLMVPITKDYLTADFIADRDYPIALVTSGRLGSINHTLLNLELCRHRGIPVESIVYNLYPAEDDRIIANTLDYLRFYLHKYHPDTQLMVMPERN","2150613 2151326","TIGR ID: PG2053","dethiobiotin synthase 2","Cytoplasm","Residues 6-213 have 49% similarity to AE006227, P. multocida BioD2.Residues 7-186 have 53% similarity to U32830, H. influenzae dethiobiotin synthase (bioD-2). Residues 8-209 have 48% similarity to AL162754,N. meningitidis putative dethiobiotin synthetase.","
InterPro
IPR004472
Family
Dethiobiotin synthase
PIRSF006755\"[6-216]TDTB_synth
TIGR00347\"[10-180]TbioD
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[6-202]TG3DSA:3.40.50.300
PTHR21343\"[8-216]TPTHR21343
SSF52540\"[1-216]TSSF52540


","BeTs to 9 clades of COG0132COG name: Dethiobiotin synthetaseFunctional Class: HThe phylogenetic pattern of COG0132 is -m--yq-cEbrHuj-----n-Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 7-180 are 54% similar to a (DETHIOBIOTIN SYNTHETASE SYNTHASE DTB) protein domain (PD003986) which is seen in BID2_HAEIN.","","Thu Jun 14 12:59:53 MDT 2001","","Thu Jun 14 12:59:53 MDT 2001","Thu Jun 14 12:59:53 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 12:59:53 MDT 2001","Thu Jun 14 12:59:53 MDT 2001","","","Thu Mar 8 09:33:59 MST 2001","Mon Jun 25 13:15:06 MDT 2001","Thu Mar 8 09:33:59 MST 2001","","Mon Jun 25 13:15:06 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 8 09:33:59 MST 2001","-46% similar to PDB:1A82 DETHIOBIOTIN SYNTHETASE FROM ESCHERICHIA COLI, COMPLEX WITH SUBSTRATES ATP AND DIAMINOPELARGONIC ACID (E_value = 3.5E_18);-46% similar to PDB:1BS1 DETHIOBIOTIN SYNTHETASE COMPLEXED WITH DETHIOBIOTIN, ADP , INORGANIC PHOSPHATE AND MAGNESIUM (E_value = 3.5E_18);-46% similar to PDB:1BYI STRUCTURE OF APO-DETHIOBIOTIN SYNTHASE AT 0.97 ANGSTROMS RESOLUTION (E_value = 3.5E_18);-46% similar to PDB:1DAD DETHIOBIOTIN SYNTHETASE COMPLEXED WITH ADP (E_value = 3.5E_18);-46% similar to PDB:1DAE DETHIOBIOTIN SYNTHETASE COMPLEXED WITH 3-(1-AMINOETHYL) NONANEDIOIC ACID (E_value = 3.5E_18);","","","No significant hits to the Pfam 11.0 database","Mon Jun 25 13:15:06 MDT 2001","34541638","Thu Mar 8 09:33:59 MST 2001","","","","","1","","","PG2053" "PG1793","2152107","2151439","669","ATGAAGAAATCAAGTGTAGTAGCCTCAGTTTTGGCCGTGGCTCTCGTGTTCGCCGGTTGCGGACTGAACAATATGGCAAAAGGCGGCCTTATCGGCGCCGGAGTAGGAGGTGCCATTGGTGCCGGAGTAGGTAACGTAGCCGGAAATACGGCTGTCGGTGCCATCGTCGGTACTGCAGTCGGTGGAGCAGCCGGTGCTCTCATCGGAAAGAAGATGGACAAGCAGAAAAAAGAACTGGAGGCCGCAGTACCCGATGCTACGATTCAGACAGTAAATGACGGAGAGGCTATTCTGGTTACTTTCGATAGCGGTATCCTCTTTGCGACGAACTCCAGCACTCTGAGTCCCAACTCACGCACTGCGCTGACGAAGTTTGCTGCAAACATGAACAAAAACCCCGACACGGATATTCGTATCGTAGGCCATACGGACAATACCGGCTCCGACAAGATCAACGATCCTCTGTCTGAGAGACGTGCAGCCAGCGTATATTCTTTCCTGAATTCTCAGGGTGTGAGTATGTCGCGCATGGCAGCCGAAGGGCGTGGGAGCCATGAACCGGTTGCAGACAATAGCACAGTTGCCGGACGTTCGGCCAACCGCCGTGTGGAGGTTTATATCTTGCCGAATGCCAAGATGATCGAACAAGCACAGCAAGGTACGCTGAAG","10.00","4.43","22616","MKKSSVVASVLAVALVFAGCGLNNMAKGGLIGAGVGGAIGAGVGNVAGNTAVGAIVGTAVGGAAGALIGKKMDKQKKELEAAVPDATIQTVNDGEAILVTFDSGILFATNSSTLSPNSRTALTKFAANMNKNPDTDIRIVGHTDNTGSDKINDPLSERRAASVYSFLNSQGVSMSRMAAEGRGSHEPVADNSTVAGRSANRRVEVYILPNAKMIEQAQQGTLK","2152106 2151438","Ross, et al.(2001) select PG1793 as one of fifteen vaccine candidate antigens, based on in vitro and in vivo laboratory studies of 120 candidates screened by bioinformatics techniques from the whole W50 genome. TIGR ID: PG2054","outer membrane protein (immunogenic 23 kDa lipoprotein PG3)","Outer membrane, Extracellular","PG1793 was previously sequenced and submitted as AAD39495, immunogenic 23 kDa lipoprotein PG3 by Ross,B.C., Barr,I., Patterson,M., Agius,C., Rothel,L., Margetts,M., Hocking,D. and Webb,E..","
InterPro
IPR006664
Domain
Bacterial outer membrane protein
PR01021\"[107-129]T\"[137-152]T\"[152-168]TOMPADOMAIN
InterPro
IPR006665
Domain
OmpA/MotB
PD000930\"[98-163]TOmpA/MotB
PF00691\"[106-201]TOmpA
PS51123\"[94-211]TOMPA_2
InterPro
IPR006690
Domain
OmpA-like
PS01068\"[139-183]TOMPA_1
noIPR
unintegrated
unintegrated
G3DSA:3.30.1330.60\"[89-211]TG3DSA:3.30.1330.60
PS51257\"[1-20]TPROKAR_LIPOPROTEIN
SSF103088\"[92-211]TSSF103088


","BeTs to 9 clades of COG1360COG name: Flagellar motor protein MotBFunctional Class: NThe phylogenetic pattern of COG1360 is -----Qv-EBrHUJ--OLinxNumber of proteins in this genome belonging to this COG is 5","***** IPB001145 (Bacterial outer membrane protein) with a combined E-value of 8.9e-28. IPB001145A 44-54 IPB001145B 104-130 IPB001145C 137-172 IPB001145D 198-207","Residues 105-207 are 47% similar to a (PROTEIN MEMBRANE OUTER PRECURSOR SIGNAL TRANSMEMBRANE) protein domain (PD000930) which is seen in O85448_BBBBB.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Wed Nov 7 14:34:31 2001","Thu May 17 18:04:34 MDT 2001","Thu Mar 8 09:41:09 MST 2001","Wed Nov 7 14:33:59 2001","Thu Mar 8 09:41:09 MST 2001","Thu Mar 8 09:41:09 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 105-197 have 33% similarity to PG0941 peptidoglycan-associated lipoprotein.","Thu Mar 8 09:44:05 MST 2001","Thu Mar 8 09:41:09 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 106 to 201 (E-value = 7.9e-31) place PG1793 in the OmpA family which is described as OmpA family (PF00691)","Thu May 17 18:04:34 MDT 2001","34541639","Thu Mar 8 09:41:09 MST 2001","Ross BC, Czajkowski L, Hocking D, Margetts M, Webb E, Rothel L, Patterson M, Agius C, Camuglia S, Reynolds E, Littlejohn T, Gaeta B, Ng A, Kuczek ES, Mattick JS, Gearing D, Barr IG, Identification of vaccine candidate antigens from a genomic analysis of Porphyromonas gingivalis, Vaccine 2001 Jul 20;19(30): 4135-42, PMID: 11457538.Ross,B.C., Barr,I., Patterson,M., Agius,C., Rothel,L., Margetts,M.,Hocking,D. and Webb,E.,Porphyromonas gingivalis polypeptides and nucleic acids,Patent: Australia (AU 98/01023)-PCT 10-DEC-1998.","","Wed Nov 7 14:33:59 2001","","1","","","PG2054" "PG1794","2153153","2152176","978","ATGATCGATTTGTCCACTGAGTTCGCCGGCTTGCGCCTGAAAAATCCTATTGTTGCAGCAAGTTCGGGACTGACCCGCAACCTCAAAACCATCAAAGATCTCGAAGCAGCGGGTGTTGCTGCCATCGTACTGAAATCACTGTTCGAAGAGCAGATCGAGGCAGAAATGTCCCAAATGATGTCCCCGATGGATTATCCTGAGGCGGCAGACTATATCAATGCCTATGTACAGAGCAACGAGATCTCCAAACACCTCGACTTCCTCCGCGAAGTGAAGCGCGAGGTGGCTATCCCCGTAATAGCCAGCATCAACTGCTTCCGCTCCGATTCGTGGGTGGACTTTGCCAAGCAGTTCGAAGAAGCCGGAGCCGACGCTCTCGAAATCAACGTGATGCGACTCAATACCGATCTCTTCTTCGATGCCAACAAAGCCGAACAGATGTATGTGGATATTATCAGCTCTCTGATCAAAGCCATCAGAATCCCTGTAGTGGTGAAGCTTTCCAAATCTTTTGCCAATATCCCATCTCTCGTCGATAAGCTGCGTGCGGCAGGAGCCAAGGGTGTGGTGCTTTTCAATCGCTCATACCAGCCCGACATCGACATCGACAAAGTACAGATGGTGGCCGGAGACGTATTTACCTCTGCAGGAGAAATATCAGATACGATTCGCCATGCCGGTATCGTGAGTGCATTGGTGCCGGGCATATCCATCGCTTCTTCCACAGGTATTCATGATGGTGAGGCCGCACTCAAGTGCTTGCTGGCCGGTGCACATGTGACTCAGATATGTACGGTTCTTTACAAAAAGGGACCTCAATTCGTGGCCGAAATGATCGCCACCATTGAGAGCTGGATGCAAGTAAAGGGCTATTATTCGGTTAGTGAATTCCGAGGCAAGCTCAATGCAGCGAGCGTGAAGTCGGCAACGATGTACGAGCGTATGCAGTTTATGAAGTACTTTGCCAATAAAGATAAT","5.50","-4.16","35807","MIDLSTEFAGLRLKNPIVAASSGLTRNLKTIKDLEAAGVAAIVLKSLFEEQIEAEMSQMMSPMDYPEAADYINAYVQSNEISKHLDFLREVKREVAIPVIASINCFRSDSWVDFAKQFEEAGADALEINVMRLNTDLFFDANKAEQMYVDIISSLIKAIRIPVVVKLSKSFANIPSLVDKLRAAGAKGVVLFNRSYQPDIDIDKVQMVAGDVFTSAGEISDTIRHAGIVSALVPGISIASSTGIHDGEAALKCLLAGAHVTQICTVLYKKGPQFVAEMIATIESWMQVKGYYSVSEFRGKLNAASVKSATMYERMQFMKYFANKDN","2153152 2152175","TIGR ID: PG2055","dihydroorotate dehydrogenase","Cytoplasm","Residues 1-299 have 28% similarity to AL445064, T. acidophilum dihydroorotate dehydrogenase B related protein.Residues 3-299 have 27% similarity to AP000058, A. pernix hypothetical dihydroorotate dehydrogenase.Residues 1-300 have 23% similarity to U09178, H. sapiens dihydropyrimidine dehydrogenase. ","
InterPro
IPR001295
Domain
Dihydroorotate dehydrogenase, core
PF01180\"[3-286]TDHO_dh
InterPro
IPR012135
Family
Dihydroorotate dehydrogenase, classes 1 and 2
PIRSF000164\"[4-303]TDHO_oxidase
InterPro
IPR013785
Domain
Aldolase-type TIM barrel
G3DSA:3.20.20.70\"[4-291]TAldolase_TIM
noIPR
unintegrated
unintegrated
PTHR11938\"[1-133]TPTHR11938
PTHR11938:SF4\"[1-133]TPTHR11938:SF4
SSF51395\"[3-304]TSSF51395


","BeTs to 9 clades of COG0167COG name: Dihydroorotate dehydrogenaseFunctional Class: FThe phylogenetic pattern of COG0167 is amtkyqvCEbrhuj-------Number of proteins in this genome belonging to this COG is 2","***** IPB001295 (Dihydroorotate dehydrogenase) with a combined E-value of 3.7e-07. IPB001295A 10-22 IPB001295E 162-172 IPB001295H 236-266","Residues 2-319 are 32% similar to a (HYPOTHETICAL 38.4 KD PROTEIN) protein domain (PD123501) which is seen in Q55989_SYNY3.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Mar 8 10:00:34 MST 2001","Thu Mar 8 10:00:34 MST 2001","Thu Mar 8 10:00:34 MST 2001","Thu Mar 8 10:00:34 MST 2001","Thu Mar 8 10:00:34 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 10-301 have 22% similarity to PG0947, probable dihydroorotate dehydrogenase.","Thu Mar 8 10:00:34 MST 2001","Tue Jul 22 13:05:40 2008","-47% similar to PDB:1H7X DIHYDROPYRIMIDINE DEHYDROGENASE (DPD) FROM PIG, TERNARY COMPLEX OF A MUTANT ENZYME (C671A), NADPH AND 5-FLUOROURACIL (E_value = 1.0E_15);-47% similar to PDB:1GT8 DIHYDROPYRIMIDINE DEHYDROGENASE (DPD) FROM PIG, TERNARY COMPLEX WITH NADPH AND URACIL-4-ACETIC ACID (E_value = 1.7E_15);-47% similar to PDB:1GTE DIHYDROPYRIMIDINE DEHYDROGENASE (DPD) FROM PIG, BINARY COMPLEX WITH 5-IODOURACIL (E_value = 1.7E_15);-47% similar to PDB:1GTH DIHYDROPYRIMIDINE DEHYDROGENASE (DPD) FROM PIG, TERNARY COMPLEX WITH NADPH AND 5-IODOURACIL (E_value = 1.7E_15);-47% similar to PDB:1H7W DIHYDROPYRIMIDINE DEHYDROGENASE (DPD) FROM PIG (E_value = 1.7E_15);","","","Residues 3 to 286 (E-value = 1.2e-08) place PG1794 in the DHO_dh family which is described as Dihydroorotate dehydrogenase (PF01180)","Thu May 17 18:08:02 MDT 2001","34541640","","","","","","1","","","PG2055" "PG1795","2154263","2153961","303","TTGGATCGGGGTTCGCCTTTTGTGAAAGGATATGGGAAATATCTGTCAAATGCCGAAGAAGTCTGTAAGCTCATACGATACCATTGGGCCATAGAGAACAATCTGTACCATTGTCATGATGTCATTCTCGGAGAAGATCGATCGCTCAGACGAAAGGACAATGCAGCCAAAAATGTCAATATAATCCATAAGATAGCTCTCTTCTTTCTCGAACGATTGAAGAGCAGACCCAAAAGCTCATTCAATGCGCTGCAAAAGATAAACGCCCTCAGAAAACCTTCCCAAATACTATCATCCGATCTC","10.60","8.85","11678","LDRGSPFVKGYGKYLSNAEEVCKLIRYHWAIENNLYHCHDVILGEDRSLRRKDNAAKNVNIIHKIALFFLERLKSRPKSSFNALQKINALRKPSQILSSDL","2154262 2153960","Pfam does not pick up similarity to the transposase model.Member of IS5 family of elements. Corresponds to the C-terminal domain of full-length ISPg2 elements such as PG1522.TIGR ID: PG2056","ISPg2 fragment (PGIS2-related fragment)","Cytoplasm","PG1795 is weakly similar to gb|AAC45368.1, a previously sequenced ISPg2 sequence: residues 2-98 are 43% similar to the C-terminal residues of gb|AAC45368.1.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Fri Feb 16 16:06:30 MST 2001","Fri Feb 16 16:06:39 MST 2001","Fri Feb 16 16:06:30 MST 2001","Thu Feb 8 12:52:15 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","PG1795 is weakly similar to PG1905, PG1522, PG1185, PG0775, PG0249, PG0943, all predicted ISPg2 transposases. Specifically it corresponds to the C-terminal domain of full-length ISPg2 elements such as PG1522.","Fri Feb 16 16:06:30 MST 2001","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","PG2056" "PG1796","2156040","2155105","936","CTGCTTGGCTTTAGCCGTCAGGCCTTTTATAAACGTCATCTCAACGATTTAGCTAGGCACGAGGAGGATGTCCTATGCAGTAGTATCATCCAATATTGTTGGCACTTAAGACAAGCAGAGCACCTACCTCAAGCCGGCTTCCGAGAGCTCATGGTGCTTTGTCAGCAATACTTCGGCCCCAAGTTCACGCTTGGGCGCGATCGCTTTTGCGCCCTACTCAGACGCCATGGTATGATGCTGCGCAAACGGTCTGTGCGCCCTCGGACAACCAACTCTCGGCATAGGCTCTACAAGTATGAAGACCTGCTCAATACAGAGCCTAAGTTTGTGCCTCAAAGACCTGGGGAACTCCTTGTAGCAGACATCACCTACGTGGCTTACCAAGATGGGTTTGCCTATCTCTCCCTACTGACCGATGCCTATAGTCGCTGTATCGTAGGGTATTGCTTACATCCTACCCTAGAGGTTGAAGGCTGTTTGAATGCTCTGCATCAAGCCTTTGCTTTCTACGATCAGCATCAAATTGATACGAGCAATATGATTCATCATAGCGACCGAGGCATTCAGTATGCCGGTAAGAGCTACACCGATCTGTTGCATGGGCGAGGCTGTCGCATCAGCATGACTCAGACGGGAGATCCTCTGCATAATGCATTGGCTGAGCGGATGAACAATACGCTCAAGAACTCGTGGCACATCTCCTCTTCGAAGCAGTCTTTTGATCAAGCACTCCTTTCTGTAGACCGAGCCGTGCGCATGTACAACGAGGCGCGTCCACATCAAGCTCTAAGGGCGAAAACGCCTATGCAAGTCATTGCGCCGGAGTCTAAAAATCCGTTACTAACGAGGAGGGAGCATGGGCCAGAGATTGCCCCCGAGCTATACCGAAGGATGAATGTCAGACAAAGAGCTAACTTTGCTCGTGTCAACCGAAAT","10.30","17.47","36304","LLGFSRQAFYKRHLNDLARHEEDVLCSSIIQYCWHLRQAEHLPQAGFRELMVLCQQYFGPKFTLGRDRFCALLRRHGMMLRKRSVRPRTTNSRHRLYKYEDLLNTEPKFVPQRPGELLVADITYVAYQDGFAYLSLLTDAYSRCIVGYCLHPTLEVEGCLNALHQAFAFYDQHQIDTSNMIHHSDRGIQYAGKSYTDLLHGRGCRISMTQTGDPLHNALAERMNNTLKNSWHISSSKQSFDQALLSVDRAVRMYNEARPHQALRAKTPMQVIAPESKNPLLTRREHGPEIAPELYRRMNVRQRANFARVNRN","2155889 2155104","One of eleven ISPg5 elements in the genome (see Paralogs). Califano et al. report considerable strain diversity of these (Infect. Immun. 68 (9), 5247-5253 (2000)).Member of the IS3 family of insertion elements. See PG1797 for associated ORF.TIGR ID: PG2057","ISPg5 transposase","Cytoplasm","PG1796 is equivalent to the previously reported gb|AAF69128.1| in GenBANK.Numerous significant hits in gapped BLAST to transposase proteins; e.g. residues 91-213 are 56% similar to transposase homolog (U67062) of Bacteriodes thetaiotaomicrom, residues 64-287 are 32% similar to InsB (AF153317) of Shigella dysenteriae, residues 64-268 are 33% similar to Hp1 (AF081284) of E.coli.","
InterPro
IPR001584
Domain
Integrase, catalytic core
PF00665\"[110-273]Trve
PS50994\"[110-276]TINTEGRASE
noIPR
unintegrated
unintegrated
G3DSA:3.30.420.10\"[113-231]Tno description


","No hit to the COGs database.","***** PF01836 (Transposase) with a combined E-value of 6.4e-22. PF01836B 103-154 PF01836C 181-190 PF01836D 215-222 PF01836E 253-272","No significant hit to the ProDom database.","","Thu Jun 14 13:00:18 MDT 2001","","Thu Jun 14 13:00:18 MDT 2001","Thu Jun 14 13:00:18 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:00:18 MDT 2001","Thu Jun 14 13:00:18 MDT 2001","","Mon Jun 25 10:43:53 MDT 2001","Fri Feb 9 16:37:02 MST 2001","Mon Jun 25 10:43:53 MDT 2001","Thu Nov 16 10:51:06 MST 2000","Mon Jun 25 10:43:53 MDT 2001","","yes","Fri Feb 20 15:41:32 MST 1998","PG1796 is essentially identical to PG0533, PG1247, PG0841, PG0034, and PG1436, and is paralogous to PG0418, PG1861, PG0007, PG1491, and PG0391, all ISPg5 transposases.","Tue Jun 5 13:32:46 MDT 2001","Tue Jun 5 13:32:46 MDT 2001","-55% similar to PDB:1DZB CRYSTAL STRUCTURE OF PHAGE LIBRARY-DERIVED SINGLE-CHAIN FV FRAGMENT 1F9 IN COMPLEX WITH TURKEY EGG-WHITE LYSOZYME (E_value = );","","","Residues 110 to 273 (E-value = 3.2e-30) place PG1796 in the rve family which is described as Integrase core domain (PF00665)","Mon Jun 25 10:43:53 MDT 2001","34541641","","Califano,J.V., Kitten,T., Lewis,J.P., Macrina,F.L., Fleischmann,R.D., Fraser,C.M.,Duncan,M.J. and Dewhirst,F.E. Characterization of Porphyromonas gingivalis insertionsequence-like element ISPg5.Infect. Immun. 68 (9), 5247-5253 (2000)","","Thu Nov 16 10:51:06 MST 2000","","1","","","PG2057" "PG1797","2156483","2156097","387","TTGGGCGGGATGCAACCAGTATCCATTATGGGCAAACATTTAAACAACTTTGAACGCCTTAGCATCCTTGAGGATTACCTCTCGGGGTCAGATAGCAAAGTAGCCATTGAGCAGAAATATGGTCTAAGTCATGGTCTCATTCGCTCTTGGCTTAGTAAATTTGGACTCGAAGATAAAGTTCATCCGGTCCCAATGAAAGTGTCCCAATCCCCCCAGAGTGAGCTACCCCTGAACGAAAAAGAAGAGTTAGAGCAGCTACGTAAAGAAAATCGTGTCCTCAAGAGTCGTCTCAAGCGAGAAGAACTAGGGCATCAAGCCTACAAGCTACTTGTAGAGTTGGCAGAAGAAACCTACGGCATTCAGATACGAAAAAACTCCGAAGCCAAG","9.00","1.96","14755","LGGMQPVSIMGKHLNNFERLSILEDYLSGSDSKVAIEQKYGLSHGLIRSWLSKFGLEDKVHPVPMKVSQSPQSELPLNEKEELEQLRKENRVLKSRLKREELGHQAYKLLVELAEETYGIQIRKNSEAK","2156482 2156096","See PG1796 for associated transposase.Member of the IS3 family of insertion elements.TIGR ID: PG2058","ISPg5-related orf-1","Cytoplasm","PG1797 is equivalent to the previously reported gb|AAF69127.1 in GenBANK.Otherwise, no hits in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Fri Feb 9 17:29:51 MST 2001","Fri Feb 9 17:29:51 MST 2001","Fri Feb 9 17:29:51 MST 2001","Tue Dec 19 15:33:13 MST 2000","","","yes","Fri Feb 20 15:41:32 MST 1998","PG1797 is paralogously related to PG1862, PG0008, PG1490, PG1437, PG0033, PG0532, PG0392, PG1246, PG0840 and PG0419, all ORFs associated with ISPg5-related transposases. ","Tue Dec 19 15:33:13 MST 2000","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541642","","Califano,J.V., Kitten,T., Lewis,J.P., Macrina,F.L.,Fleischmann,R.D., Fraser,C.M., Duncan,M.J. and Dewhirst,F.E.Characterization of Porphyromonas gingivalis insertionsequence-like element ISPg5.Infect. Immun. 68 (9), 5247-5253 (2000)20407340","","Fri Feb 9 17:29:51 MST 2001","","1","","","PG2058" "PG1798","2156732","2157508","777","ATGGAAGAGGTATCTCCCGACCACAGCACCATCAGTCGATTTCGTTCGGCACTGACAGAGTTGGGGCTCATGGACAAACTATTGGCGCAGTTTAACAAACAACTTTCCCGCCATCACATTTCGGTCAGGGAAGGGGTGCTTGTCGATGCAAGCCTTGTGGAGACGCCGCATAAACCCAACGGAAGCATTACGATTGAAGTCGCAGACGACAGAGAAGACAATCGGAGCGAGGAGGAAAAAGAGGCAGAGGAGGATTATCAAAAACAGGTTGTCCGTCAGCGTAAAGGGACGGATGAAGAAGCCCGTTGGGTTTACAAACAAAAGCGTTATCACTACGGATACAAAAAGCATTGTCTGACCAATGTTCAAGGCATTGTTCAAAAGGTGATAACGACTGCAGCGAACCGCAGTGACACGAAGGAGTTTATTGCGCTATTGCAGGGTGCAAACATACCTCAAGGCTCAGCCGTCTTGGCGGACAAAGGATATGCTTGCGGGGAAAATCGTTCCTACCTGCAAACCCATCACCTTCAAGACGGCATCATGCACAAGGCACAACGCAACAGGGCATTGACCGAGGAAGAGAAGCAACGAAACAAAGCAATCAGTCGGATACGGAGCACCATCGAACGCACCTTTGGCAGTATTCGCCGGTGGTTTCATGGCGGACGATGTCGATACCGGGGACTTGCCAAGACCCATACTCAAAACATTCTTGAAAGCATCGCCTTTAATTTATACAGGACCCCGGGGATAATTATGTCCTCATCTCTAGGA","10.10","10.52","29651","MEEVSPDHSTISRFRSALTELGLMDKLLAQFNKQLSRHHISVREGVLVDASLVETPHKPNGSITIEVADDREDNRSEEEKEAEEDYQKQVVRQRKGTDEEARWVYKQKRYHYGYKKHCLTNVQGIVQKVITTAANRSDTKEFIALLQGANIPQGSAVLADKGYACGENRSYLQTHHLQDGIMHKAQRNRALTEEEKQRNKAISRIRSTIERTFGSIRRWFHGGRCRYRGLAKTHTQNILESIAFNLYRTPGIIMSSSLG","2156731 2157507","Member of the IS5 family of elements. Reproduces the middle and C-terminal domains of full-length ISPg1 elements (e.g. PG1662).TIGR ID: PG2059","ISPg1 transposase fragment (IS1106-related transposase)","Cytoplasm","PG1798 is equivalent to the previously sequenced AJ130872 and AB015879 in GenBANK. Residues 6-248 are 34% similar to the IS1106 sequence of N.meningitidis (AE002488).","
InterPro
IPR002559
Domain
Transposase, IS4-like
PF01609\"[45-246]TTransposase_11


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 201-259 are 96% similar to a (TRANSPOSASE ORF7 INSERTION SEQUENCE IS1126-LIKE GENE) protein domain (PD187845) which is seen in Q9ZA61_PORGI.Residues 55-200 are 87% similar to a (TRANSPOSASE PLASMID PROTEIN ELEMENT) protein domain (PD004652) which is seen in Q9ZA61_PORGI.Residues 8-54 are identical to a (TRANSPOSASE ORF7 INSERTION SEQUENCE) protein domain (PD187846) which is seen in Q9ZA61_PORGI.","","","","","","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","","","","Mon Jun 25 10:39:53 MDT 2001","Fri Feb 16 11:48:54 MST 2001","Thu Dec 21 14:08:53 MST 2000","Thu Dec 21 11:35:22 MST 2000","","Mon Jun 25 10:39:53 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1798 is virtually identical to PG1087, PG0763, PG1755, PG0686, PG0756, PG1184, PG1230, PG1919, PG0044, PG0689, PG1215, PG1665, PG0839, PG1895, all ISPg1 fragments that reproduce the middle and C-terminal residues of PG1267, PG0169, PG1050, PG1062, PG0740, PG0918, PG1662, PG1422, PG0420, PG0499, PG1099.Also, partial similarities to PG0732, PG0842, PG0883, PG1231, PG0730, PG1159, PG1608.","Fri Feb 16 11:48:54 MST 2001","Thu Jun 14 13:00:28 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 45 to 246 (E-value = 2.2e-40) place PG1798 in the Transposase_11 family which is described as Transposase DDE domain (PF01609)","Mon Jun 25 10:39:53 MDT 2001","","","Hanley,S.A., Aduse-Opoku,J. and Curtis,M.A.A 55-kilodalton immunodominant antigen of Porphyromonas gingivalisW50 has arisen via horizontal gene transferInfect. Immun. 67 (3), 1157-1171 (1999)Maley,J. and Roberts,I.S.Characterisation of IS1126 from Porphyromonas gingivalis W83: a new member of the IS4 family of insertion sequence elementsMicrobiol. Lett. 123 (1-2), 219-224 (1994)Shibata,Y., Hayakawa,M., Takiguchi,H., Shiroza,T. and Abiko,Y.Determination and characterization of the hemagglutinin-associatedshort motifs found in Porphyromonas gingivalis multiple geneproducts. J. Biol. Chem. 274 (8), 5012-5020 (1999)","Knight,A.I., Ni,H., Cartwright,K.A. and McFadden,J.J.Identification and characterization of a novel insertion sequence, IS1106, downstream of the porA gene in B15 Neisseria meningitidis.Mol. Microbiol. 6 (11), 1565-1573 (1992)","Wed Feb 14 11:26:00 MST 2001","Wed Feb 14 11:26:00 MST 2001","1","","","PG2059" "PG1799","2157716","2158516","801","TTGCGTGGTATGAAACAGTATTTGGATCTGCTTCGCCGCATCCTCGACGAGGGAGTACGAAAAGAAGACCGCACGGGTACGGGTACGATCAGCGTATTCGGCCATCAGATGTGCTTTGACCTTGAAGAGGGATTTCCCTTGCTTACGACCAAGCGATTGCACTTGAAGTCCATTATATACGAACTGCTTTGGTTCCTCAGAGGTGACACGAACGTGCATTACCTGCAGGAACATGGCGTACGCATTTGGAACGAATGGGCTGATGAGAACGGCGATTTGGGACCTATATATGGCTACCAGTGGCGCAGTTGGCCGGACTATCGGGGAGGGCATATAGACCAAATGCAGGAGGTGCTGCGCCAGCTGCGCGAAGAACCGGACAGCCGGCGCATTATCGTATGCTCGTGGAATGTAGGCCAGCTTGCCGATATGCATCTGCCTCCATGCCACTGTTTCATGCAGTTCTATGTCGCTGACGGCCGGCTGAGCCTGCAACTCTATCAGCGCAGTGCCGATTCTTTTCTGGGCATACCGTTCAACATAGCTTCGTATGCACTCCTGCTACAAATGATCGCTCATGTCACAGGGCTGAAACCCGGGCGATTCGTACATACACTGGGCGACGCCCATATCTATCTTAACCACCTCGAACAGGTACAGCTACAACTGAGTCGTGAGCCGAGAGCGTTGCCCCGAATGGTACTGAATCCGGAGGTGTCCGATCTCTTCGACTTCCGATACGAAGACTTCCGACTCGAAGGGTATGATCCGCATCCGCACATTGCGGGCGTTGTAGCAGTC","6.40","-4.05","31148","LRGMKQYLDLLRRILDEGVRKEDRTGTGTISVFGHQMCFDLEEGFPLLTTKRLHLKSIIYELLWFLRGDTNVHYLQEHGVRIWNEWADENGDLGPIYGYQWRSWPDYRGGHIDQMQEVLRQLREEPDSRRIIVCSWNVGQLADMHLPPCHCFMQFYVADGRLSLQLYQRSADSFLGIPFNIASYALLLQMIAHVTGLKPGRFVHTLGDAHIYLNHLEQVQLQLSREPRALPRMVLNPEVSDLFDFRYEDFRLEGYDPHPHIAGVVAV","2157715 2158515","TIGR ID: PG2060","thymidylate synthase","Cytoplasm","Numerous significant hits to thymidylate synthase in gapped BLAST; e.g. residues 2-267 have 79% similarity to AE002092, D. radiodurans thymidylate synthase, residues 4-267 have 68% similarity to AE002521, N. meningitidis thymidylate synthase,residues 4-267 have 68% similarity to AE004472, P. aeruginosa thymidylate synthase.This sequence is similar to BT2047.","
InterPro
IPR000398
Domain
Thymidylate synthase, C-terminal
PD001180\"[176-267]TQ7MTB5_PORGI_Q7MTB5;
PR00108\"[45-66]T\"[118-137]T\"[144-159]T\"[162-188]T\"[200-217]TTHYMDSNTHASE
G3DSA:3.30.572.10\"[4-267]Tno description
PF00303\"[2-267]TThymidylat_synt
PS00091\"[129-157]TTHYMIDYLATE_SYNTHASE
noIPR
unintegrated
unintegrated
PTHR11549\"[61-267]TDIHYDROFOLATE REDUCTASE
PTHR11549:SF2\"[61-267]TBIFUNCTIONAL DIHYDROFOLATE REDUCTASE-THYMIDYLATE SYNTHASE


","BeTs to 8 clades of COG0207COG name: Thymidylate synthaseFunctional Class: FThe phylogenetic pattern of COG0207 is amt-y---eBrh--gp-----Number of proteins in this genome belonging to this COG is 1","***** IPB000398 (Thymidylate synthase) with a combined E-value of 2.3e-145. IPB000398A 6-39 IPB000398B 45-71 IPB000398C 92-104 IPB000398D 109-153 IPB000398E 154-196 IPB000398F 197-231 IPB000398G 242-267","Residues 59-214 are 23% similar to a (TRANSFERASE METHYLTRANSFERASE THYMIDYLATE SYNTHASE TS) protein domain (PD150895) which is seen in DUHM_BPSP1.Residues 5-267 are 68% similar to a (SYNTHASE THYMIDYLATE TRANSFERASE METHYLTRANSFERASE) protein domain (PD001180) which is seen in O33380_NEIGO.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Mar 8 10:13:14 MST 2001","Wed Dec 10 14:27:45 2003","Thu Mar 8 10:13:14 MST 2001","Thu Mar 8 10:13:14 MST 2001","Thu Mar 8 10:13:14 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 8 10:13:14 MST 2001","-81% similar to PDB:1AN5 E. COLI THYMIDYLATE SYNTHASE IN COMPLEX WITH CB3717 (E_value = 6.7E_105);-81% similar to PDB:1AOB E. COLI THYMIDYLATE SYNTHASE COMPLEXED WITH DDURD (E_value = 6.7E_105);-81% similar to PDB:1AXW E. COLI THYMIDYLATE SYNTHASE IN COMPLEX WITH METHOTREXATE (MTX) AND 2'-DEOXYURIDINE 5'-MONOPHOSPHATE (DUMP) (E_value = 6.7E_105);-81% similar to PDB:1BDU E. COLI THYMIDYLATE SYNTHASE COMPLEXED WITH DURD (E_value = 6.7E_105);-81% similar to PDB:1BID E. COLI THYMIDYLATE SYNTHASE COMPLEXED WITH DUMP (E_value = 6.7E_105);","","","Residues 4 to 267 (E-value = 3.4e-169) place PG1799 in the Thymidylat_synt family which is described as Thymidylate synthase (PF00303)","Fri May 18 11:45:46 MDT 2001","34541643","","","","","","1","","","PG2060" "PG1800","2158565","2159050","486","ATGATTTCAATCGTTGTTGCCATAGCCGAGAATGGGGCTATCGGATACAAAAATGACCTCCTCTGGCATCTGCCGGCCGATCTCAAACGATTCAAGGAAATGACCACAGGGCATAGCATTATCATGGGTAGCCGCACATTCCGCTCCCTGCCCAAAGGTGCTTTGCCGAACAGACGCAATATCGTCCTAAGCAGGATGCAGCAGGATTTTCCGGGAGCCGAATGGGCAGCTTCGCCCGAAGTGGCATTGGAGCTGGTGGGCGAAGAGGCAGAGGCCTTTGTCATCGGCGGAGCACAAGTATATGAGCAGATGCTGCCCTACACGGACAAAATCTATCTGACACGCGTGCATGCCGACTTTCCCGAAGCCGACACTTTTTTTCCTGAATTGGACATGAGCGAATGGGTGGAGCTGAGCCGTACGGAATATCCGGCCGACGAGAAAAACCGATATGCCACCACTCTGCTGGAGCTTATCCGCGATTAT","4.60","-8.27","18413","MISIVVAIAENGAIGYKNDLLWHLPADLKRFKEMTTGHSIIMGSRTFRSLPKGALPNRRNIVLSRMQQDFPGAEWAASPEVALELVGEEAEAFVIGGAQVYEQMLPYTDKIYLTRVHADFPEADTFFPELDMSEWVELSRTEYPADEKNRYATTLLELIRDY","2158564 2159049","TIGR ID: PG2061","dihydrofolate reductase","Cytoplasm","Numerous significant hits in gapped BLAST, e.g.; residues 1-151 are 45% similar to gb|AAA22853.1| dihydrofolate reductase of Bacillus subtilis, 42% similar to emb|CAA58991.1| dihydrofolate reductase of Haemophilus influenzae, 38% similar to gb|AAF93613.1| dihydrofolate reductase of Vibrio cholerae.","
InterPro
IPR001796
Domain
Dihydrofolate reductase region
PR00070\"[13-23]T\"[27-35]T\"[40-51]T\"[91-105]TDHFR
PF00186\"[1-160]TDHFR_1
InterPro
IPR012259
Family
Dihydrofolate reductase
PIRSF000194\"[1-160]TDHFR
PTHR11549:SF1\"[13-149]TDHFR
noIPR
unintegrated
unintegrated
G3DSA:3.40.430.10\"[1-161]TG3DSA:3.40.430.10
PTHR11549\"[13-149]TPTHR11549
SSF53597\"[1-157]TSSF53597


","BeTs to 6 clades of COG0262COG name: Dihydrofolate reductaseFunctional Class: HThe phylogenetic pattern of COG0262 is ----y-v-eBrh--GP--in-Number of proteins in this genome belonging to this COG is 1","***** IPB001796 (Dihydrofolate reductase) with a combined E-value of 8.3e-31. IPB001796A 5-16 IPB001796B 21-35 IPB001796C 38-50 IPB001796D 53-65 IPB001796E 92-101 IPB001796F 111-127","Residues 5-151 are 44% similar to a (DIHYDROFOLATE REDUCTASE OXIDOREDUCTASE NADP ONE-CARBON) protein domain (PD000692) which is seen in DYR_BACSU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Mar 22 10:10:27 MST 2000","Wed Jan 17 17:57:31 MST 2001","Thu Mar 22 15:43:09 MST 2001","Thu Mar 22 15:43:09 MST 2001","Thu Mar 22 15:43:09 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 22 15:43:09 MST 2001","-55% similar to PDB:1ZDR DHFR from Bacillus Stearothermophilus (E_value = 2.0E_24);-53% similar to PDB:1DDR MOLECULE: DIHYDROFOLATE REDUCTASE (E.C.1.5.1.3) COMPLEXED WITH METHOTREXATE AND UREA (E_value = 7.0E_22);-53% similar to PDB:1DDS MOLECULE: DIHYDROFOLATE REDUCTASE (E.C.1.5.1.3) COMPLEXED WITH METHOTREXATE (E_value = 7.0E_22);-53% similar to PDB:1DHJ LONG-RANGE STRUCTURAL EFFECTS IN A SECOND-SITE REVERTANT OF A MUTANT DIHYDROFOLATE REDUCTASE (E_value = 9.1E_22);-53% similar to PDB:1DRE DIHYDROFOLATE REDUCTASE COMPLEXED WITH METHOTREXATE AND NICOTINAMIDE ADENINE DINUCLEOTIDE PHOSPHATE (OXIDIZED FORM) (E_value = 9.1E_22);","","","Residues 1 to 160 (E-value = 2.6e-54) place PG1800 in the DiHfolate_red family which is described as Dihydrofolate reductase (PF00186)","Thu Mar 22 15:43:09 MST 2001","34541644","","","Iwakura,M., Kawata,M., Tsuda,K. and Tanaka,T. 1988. Nucleotide sequence of the thymidylate synthase B and dihydrofolate reductase genes contained in one Bacillus subtilis operon. Gene 64 (1): 9-20. PubMed: 2840350.","","Thu Mar 22 15:43:09 MST 2001","1","","","PG2061" "PG1801","2159114","2160475","1362","ATGCAAAAGCCTTCTATACCCAAAGGAATGCGCGATTTCAGTCCGGTCGAAATGAGCCGGCGCAACTACATATTCGACACCATACGCGAGGTGTACGAACTCTTCGGATTCAACCAAATAGAAACTCCGACGATGGAGATGCTCTCCACGCTGATGGGCAAGTACGGAGAGGAGGGAGACCGCCTGCTCTTCAAGGTGCTCAACTCCGGCGACGTGCTGGCAGACTTCTGTGCGGAGGAACTGGCAGAGAAAAATTCTCTGCGGTTTGCAGCCAAAGCTTGTGAGAAAGGGCTTCGATACGACCTGACAGTTCCCTTTGCTCGCTACGTGGTGATGCATCGCAACGAGATCAATTTCCCTTTCAAACGGTATCAGATTCAACCCGTATGGCGTGCCGATAGACCGCAGAAGGGTCGCTATCGCGAGTTTTACCAGTGCGATGGAGACGTCATCGGCTCGGATTCGCTCATGAATGAGGTAGAACTCATCCAGATCATCAGCGAAGTCTTTCGCAGATTGGGTATCAGGACTCGTATCCTGCTGAACAACCGCAAGATCCTCTCCGGTATCGCCGAAGTGGTAGATGAAGCCGACAGGCTGACGGACATTACGGTGGCGATAGACAAACTCGACAAGATCGGCCTCGACAAGGTGAACGACGAGCTGCGCACCAAAGGCTTCGGCGAAGAGGCTATCGAACGCTTGCGTCCTTTTATCGAGATGAAAGGGGACAATCGGGAGAAGCTCGACCGGCTCAAATCGGCTCTTGCCTCCTCCGAAACGGGGCTGAAAGGGATAGAAGAGCTGACCTATATCTTGGACAAAGTGGAGCGCGTGCAGCTCCATTCCGAACTGATGGTCGATATTTCTCTGGCTCGTGGCCTTTCCTATTATACAGGAGCCATTCTCGAAGTGAAAGCACTCGACGCCGAGATGGGCAGCATTACCGGCGGTGGTCGCTACGACAACCTCACCGGCATATTCGGTCTGGAGGGAATGTCCGGTGTGGGCATTTCTTTCGGTGCAGACCGTATCTATGATGTGATGATGCAGCTCGACCTCTTCCCTGCCGAGAAGCTGACCGGTACGCAGCTGCTCTTTGTCAATTTCAGCGAAGAGGATGCCGACAGCCTGCTCCCGCTGATCCAAAAGCTCAGGGAGCAAGGCCTTCGCACAGAGCTGTATCCCGAACCTGCCAAGATCAAGAAACAGATGAGCTATGCCAATGCAGCCAACATTCCATACGTGGCACTCGTCGGAGAAAACGAACGAGCGGCCGGGCAAGTGAATCTGAAAAACATGCTGACGGGAGAGCAGCAAATGTTGCCGGCGGATGCAGCAACCATTGTAGCGGCTATCGTC","4.90","-11.60","51185","MQKPSIPKGMRDFSPVEMSRRNYIFDTIREVYELFGFNQIETPTMEMLSTLMGKYGEEGDRLLFKVLNSGDVLADFCAEELAEKNSLRFAAKACEKGLRYDLTVPFARYVVMHRNEINFPFKRYQIQPVWRADRPQKGRYREFYQCDGDVIGSDSLMNEVELIQIISEVFRRLGIRTRILLNNRKILSGIAEVVDEADRLTDITVAIDKLDKIGLDKVNDELRTKGFGEEAIERLRPFIEMKGDNREKLDRLKSALASSETGLKGIEELTYILDKVERVQLHSELMVDISLARGLSYYTGAILEVKALDAEMGSITGGGRYDNLTGIFGLEGMSGVGISFGADRIYDVMMQLDLFPAEKLTGTQLLFVNFSEEDADSLLPLIQKLREQGLRTELYPEPAKIKKQMSYANAANIPYVALVGENERAAGQVNLKNMLTGEQQMLPADAATIVAAIV","histidyl-tRNA synthetase","In HAEIN, the his-tRNA synthetase appears to be ahomodimer. Histidyl-tRNA synthetase is a cytoplasmicallylocated homodimer with similarity to class-IIaminoacyl-tRNA synthetases. Reaction: ATP +l-histidine + tRNA(his) = AMP + pyrophosphate +l-histidyl-tRNA(his). TIGR ID: PG2062","histidyl-tRNA synthetase","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 4-440 are 35% similar to >gb|AAF26984.1|AC018363_29 putative histidyl tRNA synthetase of Arabidopsis thaliana, residues 4-440 are 36% similar to gb|AAG48835.1|AC084218_5 similar to histidtl-tRNA synthetase of Oryza sativa, residues 1-440 are 36% similar to gb|AAF85021.1|AE004034_11 histidyl-tRNA synthetase of Xylella fastidiosa.This sequence is similar to CT543 and to BT1840.","
InterPro
IPR000629
Domain
ATP-dependent helicase, DEAD-box
PS00039\"[193-201]FDEAD_ATP_HELICASE
InterPro
IPR002314
Domain
tRNA synthetase, class II (G, H, P and S)
PF00587\"[20-198]TtRNA-synt_2b
InterPro
IPR004154
Domain
Anticodon-binding
G3DSA:3.40.50.800\"[360-447]TAnticodon_bd
PF03129\"[364-453]THGTP_anticodon
SSF52954\"[360-447]TAnticodon_bd
InterPro
IPR004516
Family
Histidyl-tRNA synthetase, class IIa
PIRSF001549\"[2-454]THis-tRNA_synth
InterPro
IPR006195
Domain
Aminoacyl-transfer RNA synthetase, class II
PS50862\"[1-380]TAA_TRNA_LIGASE_II
InterPro
IPR015805
Family
Histidyl-tRNA synthetase
PTHR11476\"[6-70]T\"[93-454]THis-tRNA_synth
InterPro
IPR015807
Family
Histidyl-tRNA synthetase 1
TIGR00442\"[1-451]ThisS
noIPR
unintegrated
unintegrated
G3DSA:3.30.930.10\"[2-356]TG3DSA:3.30.930.10
SSF55681\"[3-358]TSSF55681


","BeTs to 17 clades of COG0124COG name: Histidyl-tRNA synthetaseFunctional Class: JThe phylogenetic pattern of COG0124 is amtkYQVCeBrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 339-439 are 30% similar to a (SYNTHETASE AMINOACYL-TRNA LIGASE PROTEIN BIOSYNTHESIS) protein domain (PD000606) which is seen in SYH_MOUSE.Residues 233-328 are 32% similar to a (SYNTHETASE AMINOACYL-TRNA HISTIDYL-TRNA) protein domain (PD001912) which is seen in O43011_SCHPO.Residues 339-439 are 36% similar to a (HISTIDYL-TRNA SYNTHETASE HISTIDINE--TRNA LIGASE HISRS) protein domain (PD191114) which is seen in Q9ZK27_BBBBB.Residues 6-175 are 40% similar to a (SYNTHETASE AMINOACYL-TRNA LIGASE PROTEIN BIOSYNTHESIS) protein domain (PD000380) which is seen in SYH_ORYSA.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","Wed Mar 22 15:06:26 MST 2000","Mon Dec 8 16:28:33 2003","Wed Mar 22 15:06:26 MST 2000","Mon Dec 8 16:28:33 2003","Fri Jan 19 15:28:33 2001","","Mon Dec 8 16:28:33 2003","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Dec 8 16:28:33 2003","-45% similar to PDB:1WU7 Crystal structure of histidyl-tRNA synthetase from Thermoplasma acidophilum (E_value = 4.1E_45);-42% similar to PDB:1ADJ HISTIDYL-TRNA SYNTHETASE IN COMPLEX WITH HISTIDINE (E_value = 9.5E_26);-42% similar to PDB:1ADY HISTIDYL-TRNA SYNTHETASE IN COMPLEX WITH HISTIDYL-ADENYLATE (E_value = 9.5E_26);-42% similar to PDB:1H4V HISTIDYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS (LIGAND FREE) (E_value = 9.5E_26);-41% similar to PDB:1QE0 CRYSTAL STRUCTURE OF APO S. AUREUS HISTIDYL-TRNA SYNTHETASE (E_value = 1.2E_23);","","","Residues 9 to 177 (E-value = 2.2e-25) place PG1801 in the tRNA-synt_2b family which is described as tRNA synthetase class II core domain (G, H, P, S and T) (PF00587)Residues 364 to 453 (E-value = 1.8e-12) place PG1801 in the HGTP_anticodon family which is described as Anticodon binding domain (PF03129)","Mon Dec 8 16:28:33 2003","34541645","","","","","","1","","","PG2062" "PG1803","2160693","2161094","402","ATGCTCCCAAAAACGTGGCGCGAGAATTTTTTCGTTTTGGTTCGGGAAGTAAAAAATTTACGCGCCACAGCGAAAAAGATCTCACGCCACTTTTTCAGAAAATACGAACCGCAACCCGGCGTTTTTTGGTTCGTGTTTCATCTTTCACGATCTCACCCGTTTCCTTTTCTTAAGCCCCTGCTATCCGGAGATCAAGCTCGGGGAGCAGCGACACCAACTCCTTGCATGCGCACGCATCTCTTTCATCGTATCGATCCTATCAAGAGCGAAATGGGAGGGCTTAGTACGGGATATATTACTTTTGTATGGAGAGGAGTACATCCGAGGATCGGTCCGATCGCTGCCGAATCCCTGACGGATGGGAAAGAAGAAGATGAAGCTCTTTCTTGTGGTTACATTATA","10.60","8.34","15370","MLPKTWRENFFVLVREVKNLRATAKKISRHFFRKYEPQPGVFWFVFHLSRSHPFPFLKPLLSGDQARGAATPTPCMRTHLFHRIDPIKSEMGGLSTGYITFVWRGVHPRIGPIAAESLTDGKEEDEALSCGYII","2160692 2161093","TIGR ID: PG2064","hypothetical protein","Cytoplasm","This sequence corresponds to gi:34397965 in Genbank.","
InterPro
IPR012456
Family
Protein of unknown function DUF1661
PF07877\"[13-43]TDUF1661


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Fri Jan 19 15:22:12 2001","Wed Mar 9 14:51:13 2005","Fri Jan 19 15:22:12 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","The amino terminal ~50 residues have similarity to domains in four short hypothetical proteins, PG1849.1, PG1659.1, PG1597.1, and PG0494.1.","Mon Mar 26 15:52:28 MST 2001","Mon Mar 26 15:40:57 MST 2001","-54% similar to PDB:1L3G NMR Structure of the DNA-binding Domain of Cell Cycle Protein, Mbp1(2-124) from Saccharomyces cerevisiae (E_value = );-53% similar to PDB:1VS9 Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements. This file, 1VS9, contains the 50S ribosome subunit. 30S ribosome subunit is in the file 2I1C (E_value = );-53% similar to PDB:2HGJ Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons. This entry 2HGJ contains 50S ribosomal subunit. The 30S ribosomal subunit can be found in PDB entry 2HGI. (E_value = );-53% similar to PDB:2HGQ Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex. This entry 2HGQ contains 50S ribosomal subunit. The 30S ribosomal subunit can be found in PDB entry 2HGP. (E_value = );-53% similar to PDB:2HGU 70S T.Th. ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A. This entry 2HGU contains 50S ribosomal subunit. The 30S ribosomal subunit can be found in PDB entry 2HGR. (E_value = );","","","No significant hits to the Pfam 11.0 database","Mon Mar 26 15:52:28 MST 2001","34541647","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Wed Mar 9 14:51:13 2005","","1","","","PG2064" "PG1804","2161143","2162165","1023","GTGCTTTTGGGTATGTCGCTCGAAGAGCTGACCACAGTGGCTCTCCGGATGGGTATGCCGCGGTTTGCAGGCAAGCAACTAGCCGAATGGATCTATGTGCGGCGTGCTACCGATTTTGCCGAGATGACGAACATATCGCAGGCCAATCGGCAGAAGTTGGCAGAGATCTACGATCTCGGACGCTACCCGTGGTCGGATGTACAATGTTCGGTGGACGGAACCAAGAAGTATCTCTTCCCCGTAGGAGAAGGGCGTTTCGTGGAATCTGTACTTATCCCTGAGGGCGACAGGGCTACGCTCTGTATCTCGTCTCAGGTCGGTTGCAAAATGGACTGCCTCTTCTGCATGACCGGCAAACAGGGATGGAACGGCAATCTCTCTGCAGCCGAGATCCTGAACCAGATTTTCTCCGTGGATGAAGCAGCCGAGCTGACCAATCTCGTCTATATGGGCATGGGCGAACCGCTCGACAATACGGACGAAGTGCTTCGCAGTATCGAAGCCCTGACAGAGCCGTGGGGCATGGGCTGGAGTCCGAAGCGCATAACAGTATCTACGATCGGTGCCAAAGGATTGGAGCGTTTCCTCGCAGAGAGCCGGTGCCATCTGGCAGTCAGCCTGCATAGCCCCTTCCCGGAAGAAAGGAGGAAACTGATGCCGGGTGAAAAGGCTTTCCCCATTATGCAGACGCTCGACCGGATCAGGGCTTACGATTTCAGCGGACAACGACGAGTGTCGTTCGAATACATCGTCTTCGATGGTCTGAACGACGATATGCGCCATGCCGACGAACTGGCCGCTATCCTCCGCGGCATCCCCTGCAGGATCAATCTGATCCGCTTCCACAAAATCCCTGCCGTATCGCTCCGTTCTTCGGATACCGCTCGCATGGAGGCTTTCCGCAAACGTATGGAATCGCATGGCTTTACCTGTACCATCCGTGCATCGCGAGGGGAAGATATATTCGCGGCATGCGGCATGCTCTCTACGAGCAAAGCGGAGTCTTCCGAAGAGAAAAGCTCG","6.40","-2.19","38228","VLLGMSLEELTTVALRMGMPRFAGKQLAEWIYVRRATDFAEMTNISQANRQKLAEIYDLGRYPWSDVQCSVDGTKKYLFPVGEGRFVESVLIPEGDRATLCISSQVGCKMDCLFCMTGKQGWNGNLSAAEILNQIFSVDEAAELTNLVYMGMGEPLDNTDEVLRSIEALTEPWGMGWSPKRITVSTIGAKGLERFLAESRCHLAVSLHSPFPEERRKLMPGEKAFPIMQTLDRIRAYDFSGQRRVSFEYIVFDGLNDDMRHADELAAILRGIPCRINLIRFHKIPAVSLRSSDTARMEAFRKRMESHGFTCTIRASRGEDIFAACGMLSTSKAESSEEKSS","2161097 2162164","TIGR ID: PG2065","conserved hypothetical protein","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 2-329 are 39% similar to gb|AAF41683.1| conserved hypothetical protein of Neisseria meningitidis MC58, residues 11-328 are 39% similar to gb|AAF93922.1| conserved hypothetical protein of Vibrio cholerae, residues 2-328 are 37% similar to gb|AAG07193.1|AE004798_16 conserved hypothetical protein of Pseudomonas aeruginosa.This sequence is similar to BT4372.","
InterPro
IPR004383
Family
Conserved hypothetical protein 48
TIGR00048\"[1-341]TTIGR00048: radical SAM enzyme, Cfr family
InterPro
IPR007197
Domain
Radical SAM
PF04055\"[102-266]TRadical_SAM
InterPro
IPR007733
Family
Agouti
SM00792\"[5-116]Tno description


","BeTs to 8 clades of COG0820COG name: Predicted Fe-S-cluster redox enzymeFunctional Class: RThe phylogenetic pattern of COG0820 is -----QVcebRhuj---l---Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 102-270 are 29% similar to a (PROTEIN BIOSYNTHESIS OXIDASE COPROPORPHYRINOGEN III) protein domain (PD000690) which is seen in O67488_AQUAE.Residues 3-328 are 38% similar to a (PROTEIN INTERGENIC REGION F17A14.4) protein domain (PD007453) which is seen in Y098_SYNY3.","","Thu Jun 14 13:00:54 MDT 2001","","Thu Jun 14 13:00:54 MDT 2001","Thu Jun 14 13:00:54 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:00:54 MDT 2001","Thu Jun 14 13:00:54 MDT 2001","","","Mon Jan 5 14:24:06 2004","Mon Jan 5 14:24:06 2004","Fri Jan 19 13:30:08 2001","","Mon Jun 25 10:36:39 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Jun 14 13:00:54 MDT 2001","-60% similar to PDB:1ORU Crystal Structure of APC1665, YUAD protein from Bacillus subtilis (E_value = );-59% similar to PDB:2HUP Crystal structure of human RAB43 in complex with GDP (E_value = );","","","Residues 102 to 266 (E-value = 4.8e-19) place PG1804 in the Radical_SAM family which is described as Radical SAM superfamily (PF04055)","Mon Jun 25 10:36:39 MDT 2001","34541648","","","","","","1","","","PG2065" "PG1805","2162259","2163311","1053","ATGAAACGCAATACCCGTTTATTATTCGTTGTGCCGGCTTTTTTCGCAATTTTTGCGATGGCTTGTGCATGCCAGGGAGGGACGGCCGGCAAGTCGTTCACCAACTCTACAGGATCTCCGGGCGAAATGATGCTGGTCATGGACGACCAATATCTGGGATCGCCTGTCGGCGAAGCCATCTACGAGGCAATGACCGAGGTGGCTCCGGCTCTGAACCAAAACGAGCCGATCATGGCTGTTTCGCGCGTATCGGAAAAGGATTTTACGGGCTTCCTCCGCTATATCCGCAATGTGCTGCAGATCGACATCAACCCCGATATATTCACCAAGACTTCTCTCAAATACGGCTATGACCAGTGGGCTAACGGTCAGCTCGTCGTGCTGATCAACAGTCCTGCGACAGATTCACTGACGGCCTACGTCGAATCCAACAAATCGGCCATACAGAACCTCTTTATCCGCCACGAGCTTTTCCTCTTCGGCCAGCTTTGGCAGAAAGACTGCAGTGCGGATGCCGACCAGCGCGTACAGCGTATGTTCGGATACCATATCAATGTGCCGGCCGATATACTCAGCCACAAGGAGGGCAAAGACTTCCTGTGGATGTCCAACAATCAGATGCGCCGGCGCAAGGATTTTTTGGTATATACTTTCCCCTATCGCGGAGCATCGGATCTGGGACTCGATCGTATGGTGGAGGTGCGTGACTCCGTGCTCAAAGCCAATATAGAAGGTTCGGACGCAGGGTCTTATCCCGTCACGGAGCGTATGCTACTGAAGCATCGCTACGTCTACCCGGGCGACCAAAAGCGAGGCGAAGTGCATGGCATCTGGCGTATGGAGGGAGGACAAATGATGTCCGGGCCTTTCGTGGCACAGGCTTTCGTCGATGGAGATCGGGTAGTAGTGGTGGAGGGTTTCGTATATCATCCCAATGAGAAGAAACGCGATCTGATGCGGCAGATGGAAGCGGCACTATACAGCATGCGTCCGAAGGCCGAGAAAGAGTTCGATCCGTCCATTATCAGGAAAGCTCGCTGGACTACACTCAAA","8.40","3.32","39918","MKRNTRLLFVVPAFFAIFAMACACQGGTAGKSFTNSTGSPGEMMLVMDDQYLGSPVGEAIYEAMTEVAPALNQNEPIMAVSRVSEKDFTGFLRYIRNVLQIDINPDIFTKTSLKYGYDQWANGQLVVLINSPATDSLTAYVESNKSAIQNLFIRHELFLFGQLWQKDCSADADQRVQRMFGYHINVPADILSHKEGKDFLWMSNNQMRRRKDFLVYTFPYRGASDLGLDRMVEVRDSVLKANIEGSDAGSYPVTERMLLKHRYVYPGDQKRGEVHGIWRMEGGQMMSGPFVAQAFVDGDRVVVVEGFVYHPNEKKRDLMRQMEAALYSMRPKAEKEFDPSIIRKARWTTLK","2162258 2163310","TIGR ID: PG2066","lipoprotein","Periplasm, Cytoplasm","This sequence corresponds to gi:34397967 in Genbank.Its nearest neighbor in the NR database is gi:53712371 from Bacteroides fragilis YCH46.","
noIPR
unintegrated
unintegrated
PS51257\"[1-22]TPROKAR_LIPOPROTEIN


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Mar 9 14:57:57 2005","Wed Mar 9 14:57:57 2005","Fri Jan 19 13:25:36 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 9 14:57:57 2005","-42% similar to PDB:1J2G Crystal structure of Urate oxidase from Bacillus SP. TB-90 co-crystallized with 8-Azaxanthine (E_value = );-45% similar to PDB:2I00 Crystal structure of acetyltransferase (GNAT family) from Enterococcus faecalis (E_value = );","","","No significant hits to the Pfam 11.0 database","","34541649","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Wed Mar 9 14:57:57 2005","","1","","","PG2066" "PG1806","2163358","2164452","1095","ATGGAGAATAAAAAGCTGAAAGTGGCCATTTCCCATGGCGACATCAATGGTATTGGGTATGAAATTCTGCTTAAGACCTTTGCCGAAGCCTCGATACTGGATCTCTTCACGCCTGTCATATACGGATCCGCCAAGGTGGCAGCCTATTACAGGAAGACCTTGGAGTTGGATTTGGAAAGTTGGAACCAAGTATCCTCGGCAACCGAAGCGGTAGAGGGCAGAGTGAATCTGGTAAACTGCATACCCGAAGACGCCAAAGTGGAGATGGGCGTTTGCTCTCCTCAGGCCGGAGCCTATGCGATAAAAGCTCTGGACATGGCCATCCAAGCCGTGAAGCAAGGCGATGCGGATGTGCTGGTGACCATGCCGATCAACAAAGCAGCCATGCCGCAGGACATCTTTCCATACAAAGGCCATACGGAATACCTGCAGGCCCAAGCCGGCATAGAGGGCGAAGATGCGCTGATGATCCTGGCGCAGGATAAGCTCCGCACAGCTTTGGTAACGATGCACGAGCCGATAGCACGCGTGCCATCGCTTATCACTCGGGAGCAAATCCTGGACAAGCTGAAGGCTTTCGATCGCAGCCTCCGCATGGATTTCGGTATAGTACGTCCGCGGATAGCCGTCATGGCTCTGAATCCGCATGCCGGCGACAGCGGACTGATCGGCACCGAGGAAAGCGACACGATCCGGCCGGCGGTGCAAGAGGCAGAAGAACAGGGATTGTTAGTGTTCGGCCCTTATGCCGCTGACGGTTTTTGGGGGTCGGATATGGCTCTGCATTTCGATGGCATTCTGTCCATGTATCATGATCAGGGGCTGATCCCTTTCAAGACTCTCTGCATGGACAGAGGGGTCAATGTGACGGCAGGGCTTTCCATCGTACGCACTTCGCCGGATCATGGTACAGGCTTCGACATCGTCGGCAAGGGCGAGGCTTCGCCCGATTCTTTCCGCGCAGCCATCTATCAGGCGATCGACATTTATCGTTCGCGGGCATCGTGGCGATCGGCTACGCGCAATCCTCTCCGAAAGAGTTATTTCGAGCGGGGCAATGACAATGAGAAATTGCCGCAAACAGAAGATGAGCAT","5.00","-11.19","40067","MENKKLKVAISHGDINGIGYEILLKTFAEASILDLFTPVIYGSAKVAAYYRKTLELDLESWNQVSSATEAVEGRVNLVNCIPEDAKVEMGVCSPQAGAYAIKALDMAIQAVKQGDADVLVTMPINKAAMPQDIFPYKGHTEYLQAQAGIEGEDALMILAQDKLRTALVTMHEPIARVPSLITREQILDKLKAFDRSLRMDFGIVRPRIAVMALNPHAGDSGLIGTEESDTIRPAVQEAEEQGLLVFGPYAADGFWGSDMALHFDGILSMYHDQGLIPFKTLCMDRGVNVTAGLSIVRTSPDHGTGFDIVGKGEASPDSFRAAIYQAIDIYRSRASWRSATRNPLRKSYFERGNDNEKLPQTEDEH","2163357 2164451","TIGR ID: PG2067","pyridoxal phosphate biosynthetic protein","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 7-318 are 37% similar to gbAAC06973.1 pyridoxal phosphate biosynthetic protein PdxA of Aquifex aeolicus, residues 7-338 are 34% similar to dbjBAA10762.1 pyridoxal phosphate biosynthetic protein PdxA of Synechocystis sp., residues 3-323 are 34% similar to dbjBAB04523.1 pyridoxal phosphate biosynthetic protein of Bacillus halodurans.This sequence is similar to BT4374.","
InterPro
IPR005255
Family
Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA
PF04166\"[28-327]TPdxA
TIGR00557\"[5-330]TpdxA
noIPR
unintegrated
unintegrated
SSF53659\"[2-334]TSSF53659


","BeTs to 4 clades of COG1995COG name: Pyridoxin biosynthesis protein of unknown functionFunctional Class: HThe phylogenetic pattern of COG1995 is -----q-ce---uj-------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 7-318 are 37% similar to a (PROTEIN PYRIDOXAL PHOSPHATE BIOSYNTHETIC) protein domain (PD017805) which is seen in O67019_AQUAE.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Fri Jan 19 15:32:44 2001","Mon Jul 21 20:02:48 2008","Fri Jan 19 15:32:44 2001","","Fri May 18 11:51:50 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Jul 21 20:02:48 2008","-51% similar to PDB:1PS6 Crystal structure of E.coli PdxA (E_value = 1.7E_43);-51% similar to PDB:1PS7 Crystal structure of E.coli PdxA (E_value = 1.7E_43);-51% similar to PDB:1PTM Crystal structure of E.coli PdxA (E_value = 1.7E_43);-52% similar to PDB:2HI1 The structure of a putative 4-hydroxythreonine-4-phosphate dehydrogenase from Salmonella typhimurium. (E_value = 5.5E_42);-55% similar to PDB:1R8K PDXA PROTEIN; NAD-DEPENDENT DEHYDROGENASE/CARBOXYLASE; SUBUNIT OF PYRIDOXINE PHOSPHATE BIOSYNTHETIC PROTEIN PDXJ-PDXA [SALMONELLA TYPHIMURIUM] (E_value = 3.6E_41);","","","Residues 28 to 327 (E-value = 6.9e-93) place PG1806 in the PdxA family which is described as Pyridoxal phosphate biosynthetic protein PdxA (PF04166)","Fri May 18 11:51:50 MDT 2001","34541650","","","","","","1","","","PG2067" "PG1807","2164477","2164932","456","ATGTTTAAGGATAAGACTATCGTTTACACATCCGGGACATTCGATATGTTCCACTACAACCATTTGCGCATGATCAACTATGCGCGCAGTTTGGCAGACATCCTTATCGTTGGCGTCAGCACGGACGAACTGGTCGCTTCATACAAGGCGCCGCCCATTATTCCTTTTATCGAGCGCTTGCAAATCCTTGAAGCCCTGAAGACACCGGACATCGTGATTCCGCAGCATACATTGGATCACACGGAGATCGTCAAGAAGCTGAATATAGACGCTTTCGTAGTGGGGGACGACTGGAATGGCAAATACGACTATCTGAAGGATCTCGGCGTTCAGGTCTTTTATTTCCCTTACGGGACGGGCGTTTCCTCTACCAAAATCAAGGAGACTATACACGATAGCTATGCCAAGACGCTGAATGAAGAGCGTCAGCACAAGCCCAAGTCTGTCCAAAACATG","6.80","-0.57","17453","MFKDKTIVYTSGTFDMFHYNHLRMINYARSLADILIVGVSTDELVASYKAPPIIPFIERLQILEALKTPDIVIPQHTLDHTEIVKKLNIDAFVVGDDWNGKYDYLKDLGVQVFYFPYGTGVSSTKIKETIHDSYAKTLNEERQHKPKSVQNM","2164476 2164931","TIGR ID: PG2068","glycerol-3-phosphate cytidyltransferase","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 1-130 are 44% similar to gb|AAC07343.1| glycerol-3-phosphate cytidyltransferase of Aquifex aeolicus, residues 8-130 are 41% similar to gb|AAB27724.1| CTP:glycerol-3-phosphate cytidylyltransferase, GCTase of Bacillus subtilis, residues 8-136 are 37% similar to gb|AAB51063.1| TagD of Staphylococcus aureus.","
InterPro
IPR004820
Domain
Cytidylyltransferase
PF01467\"[9-129]TCTP_transf_2
InterPro
IPR004821
Domain
Cytidyltransferase-related
TIGR00125\"[7-72]Tcyt_tran_rel
InterPro
IPR014729
Domain
Rossmann-like alpha/beta/alpha sandwich fold
G3DSA:3.40.50.620\"[5-133]TRossmann-like_a/b/a_fold
noIPR
unintegrated
unintegrated
PTHR10739\"[8-130]TPTHR10739
SSF52374\"[5-130]TSSF52374


","BeTs to 9 clades of COG0615COG name: Predicted cytidylyltransferasesFunctional Class: RThe phylogenetic pattern of COG0615 is amTkYQ--eb-huj-------Number of proteins in this genome belonging to this COG is 1","***** BP01938 (TRANSFERASE CYTIDYLYLTRANSFE) with a combined E-value of 7.3e-08. BP01938A 5-44 BP01938B 100-135","Residues 7-130 are 44% similar to a (TRANSFERASE CYTIDYLYLTRANSFERASE NUCLEOTIDYLTRANSFERASE) protein domain (PD001938) which is seen in O67380_AQUAE.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Fri Jan 19 15:40:28 2001","Fri Jan 19 15:40:28 2001","Fri Jan 19 15:40:28 2001","Fri May 18 12:18:27 MDT 2001","Fri May 18 12:18:27 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri May 18 12:18:27 MDT 2001","-60% similar to PDB:1COZ CTP:GLYCEROL-3-PHOSPHATE CYTIDYLYLTRANSFERASE FROM BACILLUS SUBTILIS (E_value = 3.1E_21);-60% similar to PDB:1N1D Glycerol-3-phosphate cytidylyltransferase complexed with CDP-glycerol (E_value = 3.1E_21);-59% similar to PDB:2B7L Crystal Structure of CTP:Glycerol-3-Phosphate Cytidylyltransferase from Staphylococcus aureus (E_value = 1.2E_20);-47% similar to PDB:1K4K Crystal structure of E. coli Nicotinic acid mononucleotide adenylyltransferase (E_value = 1.2E_20);-47% similar to PDB:1K4M Crystal structure of E.coli nicotinic acid mononucleotide adenylyltransferase complexed to deamido-NAD (E_value = 1.2E_20);","","","Residues 9 to 129 (E-value = 1.1e-17) place PG1807 in the CTP_transf_2 family which is described as Cytidylyltransferase (PF01467)","Fri May 18 12:18:27 MDT 2001","34541651","","","","","","1","","","PG2068" "PG1808","2164941","2165669","729","ATGGCGGTCGGATACGCGTTGATTACGGGAGGAACCAAGGGGATCGGTCTCGCAGTAGCCCGTCTCTTGGCAAGCAGAGGATACTCCCTCGTTCTTACCTACGGACATGATCAGGAGACGGCGCGAGCAGTGGCGGCCGAATTGGCAGAGAGCGCTCCATCCGTAGAGCTGCTGCAAGCGGATGCTACCGATGCGAAAGGTATCGACCTGATAGCGGAAGCCCTTGAGCAGAGGGATATTACTCTGCAAGCTCTTATCATGAATGCCGGCATCACATGCCGCACGCCTTTCGAGGAGATGACTATCGACGAATGGCAGCGCGTATTCTTTGCCAATGTCCATTTCCCCACCTTCCTGATCCAACGCCTTCTGCCGCGTATCGAGCGCAACAACGGATGTATCATCTTTACCGGATCGCTCATGGGAATAGAACCGCACGGCATGGCTCTGCCTTATGGAGTGAGCAAATCCGCTGTACACGCTCTGACCCGCAATCTGGTGAAGCATCTGGAGCCTTATGGCATCCGAGTGAATGCCGTGGCACCGGGATTTGTAGATACGGAATGGCAGAAGAACAAACCGGCCGAAATACGCCGAAATATCGAGAATAAGGTTGCTTTGCATCGCTTTGCGACACCGGATGAAGTAGCCGAAGCTTTTTTATTTTTGCTCGCCAACGCTTATTGCAATGGTGAGGTCTTGACTCTTGATGGAGGCTACAGCTTCCGC","6.00","-3.69","26601","MAVGYALITGGTKGIGLAVARLLASRGYSLVLTYGHDQETARAVAAELAESAPSVELLQADATDAKGIDLIAEALEQRDITLQALIMNAGITCRTPFEEMTIDEWQRVFFANVHFPTFLIQRLLPRIERNNGCIIFTGSLMGIEPHGMALPYGVSKSAVHALTRNLVKHLEPYGIRVNAVAPGFVDTEWQKNKPAEIRRNIENKVALHRFATPDEVAEAFLFLLANAYCNGEVLTLDGGYSFR","2164940 2165668","TIGR ID: PG2069","3-oxoacyl-(acyl-carrier-protein) reductase","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 4-241 are 32% similar to gb|AAG34189.1|AF321122_8 Sim-nJ2 of Streptomyces antibioticus, residues 7-2239 are 33% similar to gb|AAG03071.1|AF293355_7 putative reductase of Streptomyces collinus, residues 6-240 are 30% similar to emb|CAB13560.1| similar to 3-oxoacyl- acyl-carrier protein reductase of Bacillus subtilis.","
InterPro
IPR002198
Family
Short-chain dehydrogenase/reductase SDR
PR00080\"[80-91]T\"[132-140]T\"[152-171]TSDRFAMILY
PTHR19410\"[5-238]TADH_short_C2
PF00106\"[4-171]Tadh_short
InterPro
IPR002347
Family
Glucose/ribitol dehydrogenase
PR00081\"[5-22]T\"[80-91]T\"[126-142]T\"[152-171]T\"[173-190]T\"[206-226]TGDHRDH
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.720\"[6-240]TG3DSA:3.40.50.720
PTHR19410:SF95\"[5-238]TPTHR19410:SF95
SSF51735\"[2-240]TSSF51735


","BeTs to 12 clades of COG1028COG name: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)Functional Class: RThe phylogenetic pattern of COG1028 is a--KYQVCEBRHUJ----inXNumber of proteins in this genome belonging to this COG is 3","***** PR01397 (2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature) with a combined E-value of 5.6e-11. PR01397A 10-27 PR01397C 103-123 PR01397D 167-190***** IPB002198 (Short-chain dehydrogenase/reductase (SDR) superfamily) with a combined E-value of 9.9e-08. IPB002198 132-167","Residues 6-240 are 25% similar to a (HALOHYDRIN EPOXIDASE A) protein domain (PD102851) which is seen in Q46346_BBBBB.Residues 7-187 are 30% similar to a (PROTEIN OXIDOREDUCTASE DEHYDROGENASE REDUCTASE NAD NADP) protein domain (PD000038) which is seen in O32457_BBBBB.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Fri Jan 19 16:55:32 2001","Fri Jan 19 16:55:32 2001","Fri Jan 19 16:55:32 2001","Mon Mar 26 15:57:11 MST 2001","Mon Mar 26 15:57:11 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 6-239 are 28% similar to PG1095 3-oxyacyl (acyl-carrier protein) reductase and residues 6-236 are 32% similar to PG0608 short-chain dehydrogenase.","Mon Mar 26 15:57:11 MST 2001","Mon Mar 26 15:57:11 MST 2001","-50% similar to PDB:1UZM MABA FROM MYCOBACTERIUM TUBERCULOSIS (E_value = 5.1E_24);-50% similar to PDB:1UZN MABA FROM MYCOBACTERIUM TUBERCULOSIS (E_value = 5.1E_24);-49% similar to PDB:1UZL MABA FROM MYCOBACTERIUM TUBERCULOSIS (E_value = 1.5E_23);-49% similar to PDB:2NTN Crystal structure of MabA-C60V/G139A/S144L (E_value = 2.5E_23);-47% similar to PDB:2C07 OXOACYL-ACP REDUCTASE OF PLASMODIUM FALCIPARUM (E_value = 4.3E_23);","","","Residues 6 to 240 (E-value = 1.9e-51) place PG1808 in the adh_short family which is described as short chain dehydrogenase (PF00106)","Mon Mar 26 15:57:11 MST 2001","34541652","","","","","","1","","","PG2069" "PG1809","2165684","2166607","924","ATGAACGAAAACGACAAGGAGTACCAAGCCTCTCTCAAATCACTGGAGACGGAAAATATAATTGACCGGAAATTCTACCGTCCGATAGGTTTTTACTTTGCCAAGCTTCTCAGTCGTACAAGGGTAACGCCCAATATGGTTACGATCCTGTCCATCTTTGTCGGATTAGGCGGCGGGCTGTGCTTCGTGCATACTCCTTATGATCTCCGTTGGGCTGTGGCCGGTATTCTATGTATGGTAGTGGCTAATATCATGGACTGCATCGACGGACAGCTGGCTCGTCTGACCGGGATCAAGAGTGAGATCGGGCGTATTCTCGACGGCATTGCCGGAGACATTTGGTTCGCCTGCATCTATATCTGCTTCATCATTCGCTTGACAGCAGAGTATCCCGATGCCTTAGGTTCGATGACCACCGGTATCCTGATTGCCGTCGGTCTGCTCTCGGGAATCAGCCATTTGGTTCAGGCAGCCGTTACGGACTACTACAAAACGCTCCATCTCTTTTTCATCAGTCCGGAGAAGGGAAAAGAGTTCGAACGATCCACATCCATACGCCGCCGTGTAAAGGCGATGCCACACGGAGTGAATCGTCTTTTCAGCTCGTTGTACTACTATTATACGTTGATACAGGAACGTGCGACACCCCGGCTGCAAAGGCTTCTCGACCAATTGGAGGCCGATTATCCGCAAAATACCATCCCCGAAACGCTTCGGCAGCATCTGCGTAAGGATAGCCGCCGAATCATGAATATCGTGGACTTCCTTACGTTCAACGGCCGTACCATTCCTCTTTTTCTTATCGTCTTGAGCGGTCATATTTGGCTCTATTTCGTGTTCGAAATACTGATTCTGAATACAGTGCTCGTCCTCGGTATCAGACGACACGAGGCCATGTGCAGACATCACCTGAAAGAGAGGCGG","9.80","10.88","35442","MNENDKEYQASLKSLETENIIDRKFYRPIGFYFAKLLSRTRVTPNMVTILSIFVGLGGGLCFVHTPYDLRWAVAGILCMVVANIMDCIDGQLARLTGIKSEIGRILDGIAGDIWFACIYICFIIRLTAEYPDALGSMTTGILIAVGLLSGISHLVQAAVTDYYKTLHLFFISPEKGKEFERSTSIRRRVKAMPHGVNRLFSSLYYYYTLIQERATPRLQRLLDQLEADYPQNTIPETLRQHLRKDSRRIMNIVDFLTFNGRTIPLFLIVLSGHIWLYFVFEILILNTVLVLGIRRHEAMCRHHLKERR","2165683 2166606 [Shorter 2350 103 96]","TIGR ID: PG2070","conserved hypothetical protein","Inner membrane, Cytoplasm","Two weak hits in gapped BLAST to hypothetical protein, e.g.; residues 6-174 are 28% similar to gb|AAB88959.1| A. fulgidus predicted coding region AF2299 of Archaeoglobus fulgidus, and residues 23-114 are 30% similar to gb|AAC07251.1| putative protein of Aquifex aeolicus.","
noIPR
unintegrated
unintegrated
tmhmm\"[47-67]?\"[73-93]?\"[108-128]?\"[134-152]?\"[249-267]?\"[273-293]?transmembrane_regions


","BeTs to 6 clades of COG0558COG name: Phosphatidylglycerophosphate synthaseFunctional Class: IThe phylogenetic pattern of COG0558 is A-tKYQvcEbRhujgpOLINxNumber of proteins in this genome belonging to this COG is 1","***** IPB000462 (CDP-alcohol phosphatidyltransferase) with a combined E-value of 9.9e-06. IPB000462 86-111","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Fri Jan 19 16:59:07 2001","Fri Jan 19 16:59:07 2001","Fri Jan 19 16:59:07 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","-60% similar to PDB:1W7B ANNEXIN A2: DOES IT INDUCE MEMBRANE AGGREGATION BY A NEW MULTIMERIC STATE OF THE PROTEIN. (E_value = );-60% similar to PDB:1XJL Structure of human annexin A2 in the presence of calcium ions (E_value = );-60% similar to PDB:2HYU Human Annexin A2 with heparin tetrasaccharide bound (E_value = );-60% similar to PDB:2HYV Human Annexin A2 with heparin hexasaccharide bound (E_value = );-60% similar to PDB:2HYW Human Annexin A2 with Calcium bound (E_value = );","","","No significant hits to the Pfam 11.0 database","","34541653","","","","","","1","","","PG2070" "PG1810","2166580","2167512","933","GTGCAGACATCACCTGAAAGAGAGGCGGTAATCATACGCTCAGGCAACTCGAAGATCCTTAATACCCGATCGCTCATGTCAGACTCACGTCCGGAAGTTCTTACCGAAGAAGATGTACTTCGTCTTTTTCCCGTACTGGGAGGGGAGCGACGACTGACGCGCCGGTTGCTGAAAGCCCTCAAGATAACGGACATCAACGCCGTCCATGCCCGTCATATCAATCTGCGTGGAGCAGAGTTTGCCCATGCTGCACTGACTGACCCCGCCATCAATGTCTGCTACCGGCTGCACGGGGCAGAGCATTTGGAAGAGATGCGCAAGGGCGGTGCCTTTACAACGGTATCCAATCACCCGTTCGGCTCTCTGGATGGCATTATGTTGATCGATATTATCGGATCGGTACGTCCCGATTATAGCGTATTGGTCAATGGTTTTCTGTCCATGATCAGCTGCCTGCGCGACAGCTTCATACCGGTGGCTCCACTCAAAGGAATGGCCGGAGGACTTGACAGCAAGCACAATGTATCCGGAGTGAAGGAGGTACTGAACCGTCTTCAAAACGGTCAGCCGGTCGGCTTCTTCCCGGCCGGAGGAATATCCGTCTATAAAGGCAATCGCAATCGGGTGATGGACAGCGAATGGCAAGCCAGTTGTGCCAAGATGATACTCGTCAGTCAGGTGCCCGTTTATCCGATTTTCTTCAGTGGCCGCAATTCCTGGTATTTTCACTTCCTCGGATGGCTGAGCTGGGCTATTCGGACTCCGCGCATCCCTGCCGAGCTATTCAATAAGCGAGGGCATATTTTCGATGTCTATATCGGCGATCCGATCCCGCCAGAGACTATCGCTCGCTTCGAGAAGAATCCGCGCGAGCTGGCTCTCTTCCTCTATGACCGGACTTATCGTCTTGCCCCCGGACACAAGAAAAACAAA","10.50","13.27","34863","VQTSPEREAVIIRSGNSKILNTRSLMSDSRPEVLTEEDVLRLFPVLGGERRLTRRLLKALKITDINAVHARHINLRGAEFAHAALTDPAINVCYRLHGAEHLEEMRKGGAFTTVSNHPFGSLDGIMLIDIIGSVRPDYSVLVNGFLSMISCLRDSFIPVAPLKGMAGGLDSKHNVSGVKEVLNRLQNGQPVGFFPAGGISVYKGNRNRVMDSEWQASCAKMILVSQVPVYPIFFSGRNSWYFHFLGWLSWAIRTPRIPAELFNKRGHIFDVYIGDPIPPETIARFEKNPRELALFLYDRTYRLAPGHKKNK","2166504 2167511 [Bad Olap 2349 103 0]","TIGR ID: PG2071","conserved hypothetical protein","Cytoplasm","Few significant hits in gapped BLAST; e.g. residues 77-305 are 32% similar to gb|AAF96547.1| conserved hypothetical protein/hemolysin, putative of Vibrio cholerae, residues 109-311 are 27% similar to gb|AAF93662.1| hemolysin, putative of Vibrio cholerae, residues 102-282 are 26% similar to gb|AAA26103.1| ORF of Rhodobacter sphaeroides.","
InterPro
IPR002123
Domain
Phospholipid/glycerol acyltransferase
PF01553\"[172-235]TAcyltransferase
SM00563\"[111-237]TPlsC


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 102-243 are 26% similar to a (ACYLTRANSFERASE TRANSFERASE PROTEIN PHOSPHOLIPID) protein domain (PD000989) which is seen in Q53145_RHOSH.","","Thu Jun 14 13:01:26 MDT 2001","","Thu Jun 14 13:01:26 MDT 2001","Thu Jun 14 13:01:26 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:01:26 MDT 2001","Thu Jun 14 13:01:26 MDT 2001","","","Fri Jan 19 17:02:06 2001","Mon Jun 25 10:33:48 MDT 2001","Fri Jan 19 17:02:06 2001","","Mon Jun 25 10:33:48 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 52-309 are 30% similar to PG1633, a conserved hypothetical protein.","Mon Jun 25 10:33:48 MDT 2001","Mon Mar 26 16:32:03 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jun 25 10:33:48 MDT 2001","34541654","","","","","","1","","","PG2071" "PG1811","2167512","2170817","3306","ATGAAACGCTCCAAGCAACTCCGCATTTATACAGCTTCGGCGGGTTCCGGCAAGACTCATACACTTACCGGCGAATATCTTCGTTTAGCCCTGCGTACGCGCGGGGCTTTCCGTTATATACAGGCTGTCACGTTCACGAACAAAGCCACTGCCGAAATGAAGGAGCGTATTCTCGAGGAGCTGTACAGTCTGGCTGTGGGCGGATCGTCCCCTTTCGCCGAGGAGCTGATGCAGGAGTTGGCTCTGACTACCGAGCAGCTACAAGTCAGAGCACAGGAAGTCCTGACCGAAATACTAAACGACTATTCTTCTTTGCGAGTCAAGACCATTGACTCCTTCTTTCAGGAAGTAATGCGTGCCTTCTCTCATGAATTGGGACTGCCGGGTGGTTTTCGGATCGAGATGGAGCAGAAGGCCGTGCTCGAACAGGCTGTCGTCCGTCTGCTGCACAGCTTGGGAGAAAAAGATACCTCCGACGTCGAGAATTGGATCAGGCGTTTGGCTGAAGACCTGATCGAAGAGGGGCGTGGACATAACATCCGCAGGGAGATAGTCAGCTTGGGTGATGAGCTTTTCAAAGAACAGCTACTCCTGCTATCCGAGGAAGGCAAACTACCGACCAAAGCTGCCATTCATCGCTATCAAACCGAAATGAACAAGCTGATGGAAGGCTTCGAACAGCGACGTCTGTCTATTGCACGTCGGGCGGAAGAAATCGTCGCCACAGCCGGAATCAGCTTCTACGATTTCAAAGGGGGTACCAAAGGAGGTATCTTAGAGTTTGCCAAGGTGCTCAAAGGAGGAGAAGTCAAGCCTCCCACAAAGACCTTTATGGCGATGGCAGAAGGCGATCCGGAGACCACACTCTACGCCAAAACCACTCCTGCCACCACCCAGGCAGCCATCCTCTCGGCTTACCAATCCGGTCTCAAAGAGTGTCTGACCGAAATGGCAACACTCTATCTCGGCAGGGAATGGCAAGAGTATTCCACGGCCAAGCAGTCGCTTCCCTTTCTGAACCGGCTTGGTATCATCTCCGACCTTTGGCGACAAATCGAAGGAATCAGACAAGAAGAGAACAAAATGCTCATTTCCGATGCTCCGTCTCTATTGCACAGGATCATCGACGGGAGCGAGACCCCTTTCGTCTATGACAAAATCGGGGTACGCATCGAACACGAAATGATCGATGAATTTCAAGATACCAGCCGCTTACAGTACGAAAACTTCAAGCCCCTGCTGTCCGAGAGTCTGGCTCACGGCAAGTACAACCTCCTCGTCGGCGATGCCAAACAGAGTATATACCGCTTCCGCAATGCCGACCGGCGTCTGCTCACAGAGGTCGTCAGTCGGGATTTTGCCGAAACATCGGAGAGGGTCAATCTACCATATAATTGGCGAAGCACTCCCGAAATAATCGAGTTCAACAACTCCCTCTACAAGCATCTGCCACAAATCCTCTGTGAGGCTATGACTCGCGAAGCCGAGACGATGGCAATGCCCGATCCTAAGTTGCCGGAGGAGATCAACCGTACATTCATGCAGACCTATGCCGATGTGGAGCAGCTTGTGCCACCGGCTAAAGTAGACCGGCATGGAAGCGTCTGCATTTATCTTCCGTCGCCGGCATCATCAGAAGAAGCGGAAGCCAATCTTTCGTGGGAGGAGCAGATCTTGCAGGATCTTCCCCGTTTTATCATCGGTCTGCAAAAAAGAGGGTATGCTCCTTCGGATATTGCTATTCTCGTGCGCAAAACTTATCAGGCTCGCGAGATAGCTCGTGCCATGCTCTCTTATCAACCCGAACCGGATGAAGAGGACTATCCCCTTATCCCGATGTCGGACGAATCTTTGTCGCTGAGTGGAGCAGCATCAATTCGTTTTCTATCGAACCTACTCAAGTTTATATCCCGCCCCCAATCCGATGCTTTGCGACAGATCGCCTACCTGTCGTACGAAGAACTCCGCAAGGAAAAAGGCTTAGCTCCTACAGAGGAGGGCAACTTCAGTGCCGCAGAGCTTGCAGAATTTGCCAACCTTCGTCGTCGCTCCTTATACGAATTGGCAGAAGGATTGGTCTCTTTTTTCCATTCATACCTACCTGAAAGAGAGATGCCCTATCTAATTGCTTGGCTGGATTTAATCAATGATTTCGGTCACGAACGATCTGCCGATCTGCACTCTTTCCTGCAATGGTGGGACGAAACGGGGCATGCCAAAAGCCGTATTTCCTCCGCTCCCAACAGTCAGGCCGTCACGCTAATGACCATTCACAAGGCGAAAGGTCTAGGCTTCCGCGTTGTTCTTATTCCTTTCTTGGACTGGAATCTGGACGACGAAGCAGCACATCGACACATCCTCTGGTGCAAGATCGATCCTGCCCGCAGTCCTTTCAATATCCTGCCCGTAGTGCCGATCAGATATAAGAAGGAGATGGCACAAACAATGTTTGCCACAGATTATTTCCGAGAAAGAGCCGATATTCTCCTTGACAACCTCAATCTTCTTTATGTGGCTACGACACGAGCGAAGGACGAGATGCATCTGTGGTTACATCCTTCCCAAAAGCCCGAATCGCTCTCTACCGTGGGAGATCTTATACATTTAGCTCTTGCTTCCTTGGACGAGAATAAGACAGAGTCCGATATGTACTGCTGGGGAAGTCCGGTCATATCCGCGAGACAAAAAACGACAGATCACCCCTCTTCTGGCTTACCTTTTACCCTGCCCAAAGGAAGTCTCTCGGCCGTAGCCGACCGCTTGGCTATCCGGCCTGAAGGCAGTGAATTTTATCGCAGGCACAAACCGCTTTACCACGGACATGTAATGCACAGAATCCTTGCCGACATCGTTCTCGCCAAGGACATCGAGCCTGCTCTTGAGCGTTATGTGTCGGGAGGAATCGTCACGAGAGATGAGGCGATCGAATTGGTCGATCGCCTATCTGTTGTCACTTCGGACAGTCGATTGTCTCGTTGGTTCGATGGTAGCGGACGAGTTCTTAATGAACAGGATATTCTCCTCCCGGAAGGGGAACAGCGTCGTCCCGATCGGATCATTCTCTACGACGATCACACAGACATCGTAGACTATAAATTCGGAGCAGTTCGCAAAGTTCATCATGCACAGATGGAGAATTATATCCGGCTGCTCGTCTCGATGGGCTATCCATCCGTCCGCGGCTACCTATGGTACCTACCGAACAATGAGATAGTTGGsGTACGATCTGTTAGAGGAATAACGCGCAGCAAGGGGGAGGAAAGGAAGGAAGGAAAAGGAGAAAGAGGAATAGAGAGAAAAGCAAAA","6.10","-14.32","274009","MKRSKQLRIYTASAGSGKTHTLTGEYLRLALRTRGAFRYIQAVTFTNKATAEMKERILEELYSLAVGGSSPFAEELMQELALTTEQLQVRAQEVLTEILNDYSSLRVKTIDSFFQEVMRAFSHELGLPGGFRIEMEQKAVLEQAVVRLLHSLGEKDTSDVENWIRRLAEDLIEEGRGHNIRREIVSLGDELFKEQLLLLSEEGKLPTKAAIHRYQTEMNKLMEGFEQRRLSIARRAEEIVATAGISFYDFKGGTKGGILEFAKVLKGGEVKPPTKTFMAMAEGDPETTLYAKTTPATTQAAILSAYQSGLKECLTEMATLYLGREWQEYSTAKQSLPFLNRLGIISDLWRQIEGIRQEENKMLISDAPSLLHRIIDGSETPFVYDKIGVRIEHEMIDEFQDTSRLQYENFKPLLSESLAHGKYNLLVGDAKQSIYRFRNADRRLLTEVVSRDFAETSERVNLPYNWRSTPEIIEFNNSLYKHLPQILCEAMTREAETMAMPDPKLPEEINRTFMQTYADVEQLVPPAKVDRHGSVCIYLPSPASSEEAEANLSWEEQILQDLPRFIIGLQKRGYAPSDIAILVRKTYQAREIARAMLSYQPEPDEEDYPLIPMSDESLSLSGAASIRFLSNLLKFISRPQSDALRQIAYLSYEELRKEKGLAPTEEGNFSAAELAEFANLRRRSLYELAEGLVSFFHSYLPEREMPYLIAWLDLINDFGHERSADLHSFLQWWDETGHAKSRISSAPNSQAVTLMTIHKAKGLGFRVVLIPFLDWNLDDEAAHRHILWCKIDPARSPFNILPVVPIRYKKEMAQTMFATDYFRERADILLDNLNLLYVATTRAKDEMHLWLHPSQKPESLSTVGDLIHLALASLDENKTESDMYCWGSPVISARQKTTDHPSSGLPFTLPKGSLSAVADRLAIRPEGSEFYRRHKPLYHGHVMHRILADIVLAKDIEPALERYVSGGIVTRDEAIELVDRLSVVTSDSRLSRWFDGSGRVLNEQDILLPEGEQRRPDRIILYDDHTDIVDYKFGAVRKVHHAQMENYIRLLVSMGYPSVRGYLWYLPNNEIVGVRSVRGITRSKGEERKEGKGERGIERKAK","2167511 2170816","TIGR ID: PG2072","possible ATP-dependent nuclease","Cytoplasm","Gapped BLAST shows numerous weak hits to the amino terminal 150 residues and to ~100 residues in the middle of ATP-dependent helicases. Best hits include residues 1-164 and 371-485 with 32-37% similarity to gb|AAD07027 and gb|AAD08593 from two strains of H.pylori and residues 12-142 and 329-481 showing 34% and 26% similarity to a putative helicase, emb|CAB73903, in C.jejuni.This sequence is similar to BT1054.","
InterPro
IPR000212
Family
UvrD/REP helicase
PTHR11070\"[6-62]T\"[100-161]T\"[317-666]T\"[683-786]T\"[826-849]TUvrD_helicase
PF00580\"[1-714]TUvrD-helicase
InterPro
IPR000834
Family
Peptidase M14, carboxypeptidase A
PS00133\"[697-707]?CARBOXYPEPT_ZN_2
InterPro
IPR014016
Domain
Helicase superfamily 1, UvrD-related
PS51198\"[1-469]TUVRD_HELICASE_ATP_BIND
InterPro
IPR014017
Domain
UvrD-like DNA helicase, C terminal
PS51217\"[503-762]TUVRD_HELICASE_CTER
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[5-451]T\"[463-854]TG3DSA:3.40.50.300
SSF52540\"[6-854]TSSF52540


","No hit to the COGs database.","***** PF00580 (UvrD/REP helicase) with a combined E-value of 2e-48. PF00580A 9-29 PF00580B 40-57 PF00580C 393-407 PF00580D 427-440 PF00580E 752-773 PF00580F 831-843","Residues 345-483 are 34% similar to a (HELICASE DNA ATP-BINDING DNA-BINDING ATP-DEPENDENT) protein domain (PD001658) which is seen in O54378_BBBBB.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","Tue Feb 6 13:46:56 MST 2001","Tue Feb 6 13:46:56 MST 2001","","","Fri May 18 12:55:22 MDT 2001","Thu Dec 4 10:32:50 2003","Wed Dec 20 16:16:45 MST 2000","Fri Mar 9 16:30:25 MST 2001","Fri Mar 9 16:30:25 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 390-777 are 23% similar to PG0925, an ATP-dependent DNA helicase.","Fri Mar 9 17:41:41 MST 2001","Fri Mar 9 16:30:25 MST 2001","-42% similar to PDB:1W36 RECBCD:DNA COMPLEX (E_value = 9.3E_12);","","","Residues 2 to 714 (E-value = 2.5e-16) place PG1811 in the UvrD-helicase family which is described as UvrD/REP helicase (PF00580)","Fri May 18 12:55:22 MDT 2001","34541655","","","","","","1","","","PG2072" "PG1814","2176588","2177133","546","TTGTACTACACTTTTGTTCTTCGTATGAACAATGTCAATGATCGCGCTCCGACTGCCCCCTCCCCAATCTCCGGATCGAAGCCCTTCATGTGGCGGACAGTGGGTGCAAAAGTAAAACCTTTTTCCGAATCGGCAAAATCAATCGAATCTTTTTTCAGGGCTGACGCTCAAGAAAAAGCTCGTCGCCTGATCCTCCCCCTAAAAAAAGAATCCCGACGCGCTCGGCGGAACAATTCCTCTATCAATCGGGCAGCAATCGCTTTTGCGGTCACAAAAGTACGCCTTTTTTCTTTACAGACAAATCTTTCAAAATCTTTTCTCAACCGGTTCGACAAAAAAAAACAGCCCCCGAAGAAAAGGACTCCCTCCCAAGAAAGACAAAAAAAGAAGCATATATATAATATAGTTCGCGCGCGTAAGAGAGACCCAAAAGGAGCGCAAAAGAAACAGAATGAGAAGAGAAAAAAAATTCTGCGCAAAAAGACTTTTCAGTCCCAAAAAGGCGGCCGGCTAAGAAAGGAAGAGGATACAAAGGGGAGAGAAGGG","12.10","38.23","21215","LYYTFVLRMNNVNDRAPTAPSPISGSKPFMWRTVGAKVKPFSESAKSIESFFRADAQEKARRLILPLKKESRRARRNNSSINRAAIAFAVTKVRLFSLQTNLSKSFLNRFDKKKQPPKKRTPSQERQKKKHIYNIVRARKRDPKGAQKKQNEKRKKILRKKTFQSQKGGRLRKEEDTKGREG","2176587 2177132","TIGR ID: PG2076","hypothetical protein","Periplasm","No significant hits in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Fri Jan 19 17:09:01 2001","Fri Jan 19 17:09:01 2001","Fri Jan 19 17:09:01 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","PG1814 is virtually identical to PG0088, PG1459 and PG1119, all hypotheticals.","Thu Feb 8 10:45:52 MST 2001","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541659","","","","","","1","","","PG2076" "PG1815","2177484","2177101","384","ATGATGAACACATTTTTAAGAAAGAGTCTGATGATCGCTGTATGGGGGCTCACCGGCCTCATGATGACAGCACAGTCGCAAACACTCCTCACCGGCAAAAACATCGCGACAGGTTCGAAATGGAACGGTACGGACAAGAGCTTCGTCGAGACACCTCCTCCGGCAGGCCCCGTTCGCAGTATAGCAGAGTTCGAACGTTCTGCCGGAGTTCTTATCTCTTATCTTCGGTGCATCCCGATGGAGTTGCTCATAGAGCTGTCCAAGGACGACACCGTCTACACCATTGTAGCGAATGAGAACGAAAAGGCTATCGCCATATCCGAATATACAGCAGCCGGCGTAAACATGTCACCCTTCTCTCCCCTTTGTATCCTCTTCCTTTCT","5.20","-1.11","13922","MMNTFLRKSLMIAVWGLTGLMMTAQSQTLLTGKNIATGSKWNGTDKSFVETPPPAGPVRSIAEFERSAGVLISYLRCIPMELLIELSKDDTVYTIVANENEKAIAISEYTAAGVNMSPFSPLCILFLS","2177483 2177100","TIGR ID: PG2077","possible peptidylarginine deiminase","Inner membrane, Cytoplasm","PG1815 is 45% similar to a previously sequence P.gingivalis sequence in Genbank, AAD38981, which is defined as a immunoreactive 62 kDa antigen. PG1815 is also 45% similar to a previously sequenced P.gingivalis protein in Genbank, AAF06719, which is defined as a peptidylarginine deiminase.No significant hits in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-26]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Fri May 18 13:04:57 MDT 2001","Fri Jan 19 17:18:50 2001","Fri Jan 19 17:17:49 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 2-117 are 45% similar to PG1249, a peptidylarginine deiminase protein.","Tue Mar 6 08:51:47 MST 2001","Tue Mar 6 08:51:47 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Fri May 18 13:02:46 MDT 2001","34541660","","McGraw,W.T., Potempa,J., Farley,D. and Travis,J. Purification, characterization, and sequence analysis of a potential virulence factor from Porphyromonas gingivalis,peptidylarginine deiminase. Infect. Immun. 67 (7): 3248-3256 (1999), PubMed: 10377098.","","Fri May 18 13:02:46 MDT 2001","","1","","","PG2077" "PG1816","2178693","2177524","1170","ATGAGTAACAGGAAGATAAACCCGTTTGTCGTGACGGGAAAAATCGAACCGGAATATTTCTGCGACCGAGAATCCGAGTCGGCGCGCCTCATCAAGTCCATTGCAAACGGCAATAACTCGGTGGTTATCTCGCCACGTCGAATGGGGAAAACGGGACTGATCCAATTCTGCTATGACAAGGAAGAAATCGGCAGGAACTACTATACTTTTTTTATCGACATCCTCCACACATCGAGCCTGCGCGAATTTACTTACCTGCTCGGCCGCGAGATATACGAGACTCTGCTGCCACAGAGCAAAAAGATGATCAACCTCTTCGTCCGCACCCTCAAGTCGATCAGTGGAAGGTTCGGGTTCGATCCCGTAAGCGGAATGCCGACCTTCGGTATCGAGCTGGGCGACATCGAACATCCCGAATACACGTTGGAGGAGATTTTCCGGTATTTGGCCGATGCGGACAGGCCCTGTATCGTTGCCATCGATGAGTTCCAACAGATTGCGAAGTATCCGGAGAAGAATATCGAGGCTCTTCTGCGCACTCATATCCAAAAGCTCCGCAACTGCAATTTCATTTTCGCCGGCAGCGAACGGCACATGATGCAGGAGATGTTTGCCTCGGCTGCACGCCCGTTTTACCACAGTGCCGATATGCTGGAGCTTAAGGCCATCGAGGCGGATGTTTATATCCCCTTTATCGTAGGGCATTTCGAGAAACGCGATCGCAGCATCTCGCCCGATGATGCAGCACGGGTTTACCGGCTCTTCAAAGGGCATACTTTCTATATACAGAAGACCTTTAACGAGGCTTTTGCAGACACGCCCGAGGGCGAAGTATGTACGCCGGAGATCATCGAGTCGGCCATCGATAATATGATAGCATCGAACGATACCATATTCCGCGAGATACTCTCCAATATCCCCGAGAAGCAAAAGACCCTCCTCTATGCCATCGCCAAGGAGGGAGAGGCTGAGCGTATCACGTCTACCGGATTCATCAAACGTCACAACCTGATCTCCGCCAGCTCCGTACAGTCGGCTGCAAACAAACTGCTCGACAAGGACATTATCACCGAGATCAACAAGGTCTATTGTGTCACGGACAAACTTTTTGCCATGTGGATCAATACCCTCTACGGCACCAAGGACTTTTGGCGAATGACCTCCCGACCA","6.50","-2.32","44897","MSNRKINPFVVTGKIEPEYFCDRESESARLIKSIANGNNSVVISPRRMGKTGLIQFCYDKEEIGRNYYTFFIDILHTSSLREFTYLLGREIYETLLPQSKKMINLFVRTLKSISGRFGFDPVSGMPTFGIELGDIEHPEYTLEEIFRYLADADRPCIVAIDEFQQIAKYPEKNIEALLRTHIQKLRNCNFIFAGSERHMMQEMFASAARPFYHSADMLELKAIEADVYIPFIVGHFEKRDRSISPDDAARVYRLFKGHTFYIQKTFNEAFADTPEGEVCTPEIIESAIDNMIASNDTIFREILSNIPEKQKTLLYAIAKEGEAERITSTGFIKRHNLISASSVQSAANKLLDKDIITEINKVYCVTDKLFAMWINTLYGTKDFWRMTSRP","2178692 2177523","TIGR ID: PG2078","conserved hypothetical protein","Cytoplasm","Few weak hits in gapped BLAST; e.g. residues 16-232 are 27% similar to emb|CAA69473.1| orf c06028 of Sulfolobus solfataricus, residues 14-196 are 26% similar to emb|CAB50423.1| hypothetical protein of Pyrococcus abyssi, residues 14-202 are 25% similar to emb|CAB49524.1| hypothetical protein of Pyrococcus abyssi.This sequence is similar to BT0660.","
InterPro
IPR011579
Domain
Prokaryotic ATPase
PF01637\"[19-264]TArch_ATPase
noIPR
unintegrated
unintegrated
SSF52540\"[7-290]TSSF52540


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Fri Jan 19 17:27:28 2001","Tue Dec 2 17:38:41 2003","Fri Jan 19 17:27:28 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Dec 2 17:38:41 2003","No significant hits to the PDB database (E-value < E-10).","","","Residues 19 to 370 (E-value = 2.1e-05) place PG1816 in the Arch_ATPase family which is described as Archaeal ATPase (PF01637)","","34541661","","","","","","1","","","PG2078" "PG1817","2179459","2178986","474","ATGTCCGAAACAAAAGAAAGACTCTGCATATACGCCGACTTCCCATACGAATTTGCCGTTTGTGCACCGCGTACCGACTGCCCCAAGCGAGAGCAGTGCCTTCGTGCCTCAGCCTACGACGGAGTATTGGCACGAGGCCTTCAGAAAATAACGGTGATCAATCCCCTTATCCCCACTTCGGAACAAGGGTGCAAAGCCTTTGCCGACAATACCCCCGTGCTATTCGCCCATGGTATCACGCACCTCTATGACGAACTGCCGCACCACGCCGTGCAGTCGCTCAAGCATCGTCTCCTCACCTATTTCGGCAAGACCACTTACTATCGTATCTACCGCAAGGAACGCTACATCACCATCCAAGAGCAGGACTATATCCGTGACAGCTTTGTCCGGGCCGGATTTTCATCCGATCTGATCCGCTACGATGCGATGGTGTACATGTACGAACTGCAGAGCGCCATGGTCAAGAGCGAC","7.80","1.96","18354","MSETKERLCIYADFPYEFAVCAPRTDCPKREQCLRASAYDGVLARGLQKITVINPLIPTSEQGCKAFADNTPVLFAHGITHLYDELPHHAVQSLKHRLLTYFGKTTYYRIYRKERYITIQEQDYIRDSFVRAGFSSDLIRYDAMVYMYELQSAMVKSD","2179458 2178985 [Delay by 498 2360 484 0]","TIGR ID: PG2079","hypothetical protein","Cytoplasm","No significant hits in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Fri Jan 19 17:28:25 2001","Fri Jan 19 17:28:25 2001","Fri Jan 19 17:28:25 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541662","","","","","","1","","","PG2079" "PG1818","2180772","2179474","1299","ATGACCATTGACGAAATGCTGCGTTTGGATCGCAACCACCTTTGGCATCCCTATACATCGACTATAGATCCATTGCCCGTATTTCCCGTGAAGCGGGCCGAGGGAGTACGCATCTATCTGGAAGACGGCCGCGAACTGATCGACGGTATGAGTTCGTGGTGGGCAGCCATACACGGCTATAACCATCCGCGACTGAATGCCGCCGTAGAACGGCAGCTTCGGGAGATGAGCCATATCATGTTCGGCGGTTTCACCCATCGCCCGGCCGTAGAATTGGCCGAACTGCTTCTGAGCATCCTGCCGTCCGAGTTGAATAAAATCTTCTATGCCGACAGCGGTTCGGTGGCAGTGGAGGTAGCCATGAAAATGGCTTTGCAGTATCAGCAAGCCTGCGGACAGAGCAGACGTACCCGATTCGCTACGATCCGTTCGGGCTACCACGGCGATACCTGGCACGCCATGAGCGTATGCGATCCCGTTACCGGTATGCACGGCATTTTCTCGGGAGCATTGCCCGTACAGTATTTCCTGCCACAACCGAAGAGTCGCTTCGGTGGCGAATGGCTGCCGGCGGACATAGAGCCGCTCCGAGACCTCCTCTCGGCAAAGGGGGCGGAGCTGGCAGCCCTCATCCTCGAACCCATCGTGCAGGGAGCCGGCGGTATGTATTTCTACTATCCCCGGTATCTCGTCGAAGCTCGCAGACTCTGCTCCGAAGCCGGCGTACTGCTGATATTCGATGAGATAGCTACCGGATTCGGCCGCACGGGCGAACTGTTTGCGCTCCGGCACGCTGCCACGGTGCCGGATATTCTGTGTCTTGGCAAGTCATTGACCGGCGGCTATATGACCCTCTCGGCTACGATCACAACCGAAGCGATAGCCCGGACGATATGTTCGGGCGAAGCCGGCTGCTTCATGCACGGCCCCACGTTCATGGGCAATCCGTTGGCGTGTGCCGTAGCGGCCGAAAGCATCCGCCTTCTGCTCGAAAGCCCTTGGCAGGAACGAGTCAGAGCCATCGAGGCACAGCTGCGCGAAGAGTTGTCCCCTGCCATTTCGTTCGATGGTGTGGCCGAAGTACGTGTCCTCGGAGCCATCGGTGTAGTGGAGATGAAGCGGCCCGTGGATATGGCCACGCTGCAGCAGCGATTCATCCGAGAGGGAATCTGGGTACGCCCCTTCGGTCGTCTCTGCTATCTGGAGCCACCCTTCATCATATCGCCGGAAGATCTTCGTATCCTTACGCACGGACTTCTCCGTGTACTCGGTCAGGATCGATCCATTTCATTTACCCGA","6.60","-2.46","48169","MTIDEMLRLDRNHLWHPYTSTIDPLPVFPVKRAEGVRIYLEDGRELIDGMSSWWAAIHGYNHPRLNAAVERQLREMSHIMFGGFTHRPAVELAELLLSILPSELNKIFYADSGSVAVEVAMKMALQYQQACGQSRRTRFATIRSGYHGDTWHAMSVCDPVTGMHGIFSGALPVQYFLPQPKSRFGGEWLPADIEPLRDLLSAKGAELAALILEPIVQGAGGMYFYYPRYLVEARRLCSEAGVLLIFDEIATGFGRTGELFALRHAATVPDILCLGKSLTGGYMTLSATITTEAIARTICSGEAGCFMHGPTFMGNPLACAVAAESIRLLLESPWQERVRAIEAQLREELSPAISFDGVAEVRVLGAIGVVEMKRPVDMATLQQRFIREGIWVRPFGRLCYLEPPFIISPEDLRILTHGLLRVLGQDRSISFTR","2180771 2179473","TIGR ID: PG2080","adenosylmethionine-8-amino-7-oxononanoate aminotransferase","Cytoplasm, Inner membrane","Numerous significant hits in gapped BLAST; e.g. residues 3-426 are 65% similar to gb|AAC23203.1| adenosylmethionine-8-amino-7-oxononanoate aminotransferase (bioA) of Haemophilus influenzae Rd, residues 3-423 are 60% similar to gb|AAF41145.1| adenosylmethionine-8-amino-7-oxononanoate aminotransferase of Neisseria meningitidis MC58, residues 3-423 are 60% similar to emb|CAB84213.1| putative adenosylmethionine-8-amino-7-oxononanoate aminotransferase of Neisseria meningitidis Z2491.This sequence is similar to BT1442.","
InterPro
IPR005814
Family
Aminotransferase class-III
PTHR11986\"[16-429]TAminotrans_3
PF00202\"[29-374]TAminotran_3
PS00600\"[244-281]TAA_TRANSFER_CLASS_3
InterPro
IPR005815
Family
Adenosylmethionine--8-amino-7-oxononanoate aminotransferase
PTHR11986:SF8\"[16-429]TBioA
TIGR00508\"[1-426]TbioA
InterPro
IPR015421
Domain
Pyridoxal phosphate-dependent transferase, major region, subdomain 1
G3DSA:3.40.640.10\"[62-332]TPyrdxlP-dep_Trfase_major_sub1
InterPro
IPR015424
Domain
Pyridoxal phosphate-dependent transferase, major region
SSF53383\"[2-425]TPyrdxlP-dep_Trfase_major


","BeTs to 8 clades of COG0161COG name: Adenosylmethionine-8-amino-7-oxononanoate aminotranferaseFunctional Class: HThe phylogenetic pattern of COG0161 is -m--yq--eBRhuj-----n-Number of proteins in this genome belonging to this COG is 1","***** IPB000954 (Aminotransferase class-III pyridoxal-phosphate) with a combined E-value of 3.8e-64. IPB000954A 35-69 IPB000954B 107-125 IPB000954C 218-257 IPB000954D 269-281 IPB000954E 308-327","Residues 308-351 are 72% similar to a (AMINOTRANSFERASE TRANSFERASE PYRIDOXAL PHOSPHATE) protein domain (PD000519) which is seen in BIOA_HAEIN.Residues 244-286 are 83% similar to a (AMINOTRANSFERASE TRANSFERASE PYRIDOXAL PHOSPHATE) protein domain (PD000465) which is seen in BIOA_SERMA.Residues 92-331 are 37% similar to a (PYRIDOXAL PHOSPHATE AMINOTRANSFERASE TRANSFERASE PROTEIN) protein domain (PD000087) which is seen in OAT_ECOLI.Residues 122-180 are 74% similar to a (AMINOTRANSFERASE TRANSFERASE) protein domain (PD005247) which is seen in BIOA_HAEIN.Residues 360-420 are 59% similar to a (ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE) protein domain (PD006634) which is seen in BIOA_ERWHE.Residues 20-150 are 30% similar to a (AMINOTRANSFERASE TRANSFERASE DNTP-HEXOSE DEDUCED) protein domain (PD032384) which is seen in O66156_BBBBB.Residues 7-59 are 66% similar to a (ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE) protein domain (PD082147) which is seen in BIOA_ECOLI.Residues 193-243 are 70% similar to a (AMINOTRANSFERASE TRANSFERASE PYRIDOXAL PHOSPHATE) protein domain (PD082186) which is seen in BIOA_HAEIN.Residues 61-120 are 78% similar to a (AMINOTRANSFERASE TRANSFERASE PYRIDOXAL PHOSPHATE) protein domain (PD186083) which is seen in BIOA_HAEIN.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon Jan 29 14:44:02 2001","Thu Dec 4 15:28:50 2003","Fri Jan 26 10:31:53 2001","Tue Mar 27 09:40:22 MST 2001","Tue Mar 27 09:40:22 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 24-412 are 27% similar to PG1122, glutamate-1-semialdehyde 2,1-aminomutase.","Tue Mar 27 09:40:22 MST 2001","Tue Mar 27 09:40:22 MST 2001","-72% similar to PDB:1MLY Crystal Structure of 7,8-Diaminopelargonic Acid Synthase in complex with the cis isomer of amiclenomycin (E_value = 2.9E_141);-72% similar to PDB:1MLZ Crystal Structure of 7,8-Diaminopelargonic Acid Synthase in complex with the trans-isomer of amiclenomycin. (E_value = 2.9E_141);-72% similar to PDB:1QJ3 CRYSTAL STRUCTURE OF 7,8-DIAMINOPELARGONIC ACID SYNTHASE IN COMPLEX WITH 7-KETO-8-AMINOPELARGONIC ACID (E_value = 2.9E_141);-72% similar to PDB:1QJ5 CRYSTAL STRUCTURE OF 7,8-DIAMINOPELARGONIC ACID SYNTHASE (E_value = 2.9E_141);-72% similar to PDB:1S06 Crystal Structure of the R253K Mutant of 7,8-Diaminopelargonic Acid Synthase (E_value = 6.4E_141);","","","Residues 16 to 427 (E-value = 4.4e-155) place PG1818 in the Aminotran_3 family which is described as Aminotransferase class-III (PF00202)","Tue Mar 27 09:40:22 MST 2001","34541663","","","","","","1","","","PG2080" "PG1819","2181754","2180765","990","ATGATTCAGACGATCGAAAACAGACTGATAAACGGTGGCGAACTAACCCTTGAGGAAGCCCTTCTGCTGGCCTCCTCTGCCGATAAGGAAGCACTCTACGAGGCTGCACATCGGATCACCCGGTATTTCATGGGCGATAAGTTCGACACCTGCTCCATCATCAACGCCAAGAGCGGCAACTGTCCCGAAGACTGTAAATGGTGTGCTCAAAGCCGCCATTATGCCGCTTCGATAGAGAAATACGGACTTCTTTCGGCCGCGGTTTGTGCCGAGCAGGCCGCTTACAACAGGCGGCAAGGCATCGGACGCTTTTCTCTTGTGGCCAGCGGGCGCACTGCGTCTATGAACGAGATACGACAGATGGCCGAAAGTTATCGTGCCATCAAGCAACGAACGGACATCAAATGCTGCGCCTCTTTAGGGCTGCTCTCGGAGGAGAAACTGCAGATATTATTCGACAACGGGGTGACCACCTACCACTGCAATATGGAGACGGCTCCGAGTTTCTTCCCCTCCCTGTGCAGTACGCACACGCAGGACGAAAAGCTCGCCACCATTCGAGCTGCACGCCGTGTGGGAATGCGTGTATGCAGTGGCGGAATCATCGGCATGGGGGAGACGATGGAGCAGCGGATCGAATTTGCTTTCTACCTGCACAGCATCAATGTCTACTCCATCCCGATCAATATCCTGCAGCCGATCCCCGGCACTCCGCTGGAGAGGACTCTGCCTCTAAGCGAAGAGGAATACCTCACGACTGTGGCACTGTTCCGGCTCATCAATCCTCGAGCTTTTCTTCGCTTTTCGGGAGGACGGGCACAACTAAGCCCTGCCGTTCAGCGCAAAGCTATATATATAGGTATCAATGCAGCCATCACGGGCGATCTCCTCACCACGACGGGAAGCAAAGCCGCTGAGGATATGCAGCTCGTGAGGGAATGCGGATTTCAAGTGACTAACGATACAGACTGGGAGGTAAGCTATGACCAT","6.50","-2.06","36614","MIQTIENRLINGGELTLEEALLLASSADKEALYEAAHRITRYFMGDKFDTCSIINAKSGNCPEDCKWCAQSRHYAASIEKYGLLSAAVCAEQAAYNRRQGIGRFSLVASGRTASMNEIRQMAESYRAIKQRTDIKCCASLGLLSEEKLQILFDNGVTTYHCNMETAPSFFPSLCSTHTQDEKLATIRAARRVGMRVCSGGIIGMGETMEQRIEFAFYLHSINVYSIPINILQPIPGTPLERTLPLSEEEYLTTVALFRLINPRAFLRFSGGRAQLSPAVQRKAIYIGINAAITGDLLTTTGSKAAEDMQLVRECGFQVTNDTDWEVSYDH","2181819 2180764","TIGR ID: PG2081","biotin synthetase (biotin synthase)","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 5-317 are 38% similar to dbj|BAA17578.1| biotin synthetase of Synechocystis sp., residues 8-313 are 38% similar to gb|AAC07061.1| biotin synthetase of Aquifex aeolicus, residues 5-327 are 36% similar to gb|AAC00265.1| biotin synthase of Bacillus subtilis.","
InterPro
IPR002684
Family
Biotin synthase
PIRSF001619\"[1-326]TBiotin_synth
InterPro
IPR006638
Domain
Elongator protein 3/MiaB/NifB
SM00729\"[51-256]TElp3
InterPro
IPR007197
Domain
Radical SAM
PF04055\"[55-218]TRadical_SAM
InterPro
IPR010722
Domain
Biotin and thiamin synthesis associated
PF06968\"[227-318]TBATS
InterPro
IPR013785
Domain
Aldolase-type TIM barrel
G3DSA:3.20.20.70\"[12-321]TAldolase_TIM
noIPR
unintegrated
unintegrated
PTHR22976\"[1-323]TPTHR22976
PTHR22976:SF1\"[1-323]TPTHR22976:SF1
SSF102114\"[12-317]TSSF102114


","BeTs to 10 clades of COG0502COG name: Biotin synthase and related enzymesFunctional Class: HThe phylogenetic pattern of COG0502 is -MT-yqvcebrhuj-----n-Number of proteins in this genome belonging to this COG is 1","***** PF01792 (Biotin synthase) with a combined E-value of 3e-63. PF01792A 57-71 PF01792B 89-113 PF01792C 154-176 PF01792D 182-221 PF01792E 223-239 PF01792F 251-272 PF01792G 296-316 PF01792B 121-145","Residues 34-317 are 38% similar to a (PROTEIN SYNTHETASE SYNTHASE IRON-SULFUR BIOTIN) protein domain (PD003026) which is seen in BIOB_SYNY3.","","Thu Jun 14 13:01:42 MDT 2001","","Thu Jun 14 13:01:42 MDT 2001","Thu Jun 14 13:01:42 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:01:42 MDT 2001","Thu Jun 14 13:01:42 MDT 2001","","","Fri May 18 13:16:27 MDT 2001","Mon Jun 25 10:30:41 MDT 2001","Mon Jan 29 15:23:40 2001","Mon Jun 25 10:30:41 MDT 2001","Mon Jun 25 10:30:41 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri May 18 13:16:27 MDT 2001","-54% similar to PDB:1R30 The Crystal Structure of Biotin Synthase, an S-Adenosylmethionine-Dependent Radical Enzyme (E_value = 4.6E_40);-38% similar to PDB:1VK6 Crystal structure of NADH pyrophosphatase (1790429) from Escherichia coli k12 at 2.20 A resolution (E_value = 4.6E_40);-38% similar to PDB:2GB5 Crystal structure of NADH pyrophosphatase (EC 3.6.1.22) (1790429) from Escherichia coli K12 at 2.30 A resolution (E_value = 4.6E_40);-54% similar to PDB:2HAU Apo-Human Serum Transferrin (Non-Glycosylated) (E_value = 4.6E_40);-54% similar to PDB:2HAV Apo-Human Serum Transferrin (Glycosylated) (E_value = 4.6E_40);","","","Residues 55 to 218 (E-value = 6.9e-17) place PG1819 in the Radical_SAM family which is described as Radical SAM superfamily (PF04055)Residues 227 to 318 (E-value = 1.4e-25) place PG1819 in the BATS family which is described as Biotin and Thiamin Synthesis associated domain (PF06968)","Mon Jun 25 10:30:41 MDT 2001","34541664","","","","","","1","","","PG2081" "PG1820","2183477","2181939","1539","ATGCTAAAGAATCACCCTAAAGGGTTAATCTCAGCTTCTCTCACGAATATGGGAGAACGCTTCGGATTTTACATCATGATGGGAATCCTGCTACTCTTCCTGCAGGCCAAATTCGGGCTTTCGGGCAAAGAAGCTTCTGTGATTTACTCAATCTTCTATGCTTCGGTATATGTATTGGCTCTCGTGGGAGGTATTATTGCCGACTCTATGAAGAACTACAAGGGTACAATCCTTGTAGGACTTATCGTGATGGCTGCCGGCTATGTTATGCTTGGTATCCCGACTCCGACACAAGCAACAGGCATGACTCCATGGCTTATCTTCACTTGTGCGGCATTGGCATTCATTTCTTTCGGTAACGGTTTGTTCAAAGGCAACCTTCAAGCCTTGGTCGGAAGGATGTACGACAACGATACCTATCGTGACAAGCGTGATTCCGGTTTTTCTCTCTTCTATATGTTTATCAATGTCGGTGCCGTATTTGCTCCACTGGTAGCTGTAGCTATCCGTAACTGGTGGGTACAACACAATGGTTTCGTTTACAATGCTGACTTGCCTGAACGTTGCCACCAGATTCTAAATGGGACTCTTCCCGAGAATGCCAAGGCTCAGGTAATGGAAATGATTCAAGCTGCCAATAATGGTACTGCAGTTGCAACCGAAGGATTACAAGAATTTGCCTTGAAATATATCCAAGTATTCAGCACAGGATTCCACTATGCATTCCTTGCAGCCGTATTCTTTATGGCAATTTCTTTCCTGATTTATATCATCAATAAGCATCAATATCCCGCTGATCAAAAAGCTAATGCCGTAACTGAGGCTCATAAAGATCAAAAGCAAGAAATCAAGATGGCAGCCGATGAGATCCGCCAACGCATTATTGCTCTTTGCGCAGTTTTCGGTGTCGTTATTTTCTTCTGGATGTCTTTCCACCAAAACGGAGTATCGCTGACTCAGTTTGCTAAGGATTATATTGACCTAAGTAGTGTAAAACTCGATCTTGGTTTCACTTCAATAGTGGGAGCTGAAATGTTCCAGTCAATCAACCCGTTCTTCGTAGTAACTCTTACGCCACTTCTGCTCTTCATCTTCGGTTTTCTGAAGAAACGTAATATGGAGCCTTCCACCCCTAAGAAAATTGTGATCGGTATGTTTATCGCTGCACTTGCTTTCGTCGTGATGGCTATCGGTTCAATGGGACTGCCTACTTTCGAAGAGCGTAATGCAGGGGTAGAGTTTACGAAAGTTTCTCCTTGGTTGATGGTATTGACCTACATGATTCTGACGATTGCCGAACTCTTTATCAGCCCGATGGGTATCAGCTTCGTTTCTAAGGTGGCACCTCCCCATCTCCAAGGTATTATGCAGGGCTTGTGGCTGTGTGCTACGGCTGTAGGAAACTCACTCCTGTTCGTGGGTATGATTCTGTACGAATCGCTTTCTATCTCTGCTACATGGATTGTATTTACCTGTGCATGTGCATTGTCCATGCTCGTTATGCTCTCCATGGTTAAGTGGCTGGAGCGGGTAGCGAAG","8.90","7.64","56738","MLKNHPKGLISASLTNMGERFGFYIMMGILLLFLQAKFGLSGKEASVIYSIFYASVYVLALVGGIIADSMKNYKGTILVGLIVMAAGYVMLGIPTPTQATGMTPWLIFTCAALAFISFGNGLFKGNLQALVGRMYDNDTYRDKRDSGFSLFYMFINVGAVFAPLVAVAIRNWWVQHNGFVYNADLPERCHQILNGTLPENAKAQVMEMIQAANNGTAVATEGLQEFALKYIQVFSTGFHYAFLAAVFFMAISFLIYIINKHQYPADQKANAVTEAHKDQKQEIKMAADEIRQRIIALCAVFGVVIFFWMSFHQNGVSLTQFAKDYIDLSSVKLDLGFTSIVGAEMFQSINPFFVVTLTPLLLFIFGFLKKRNMEPSTPKKIVIGMFIAALAFVVMAIGSMGLPTFEERNAGVEFTKVSPWLMVLTYMILTIAELFISPMGISFVSKVAPPHLQGIMQGLWLCATAVGNSLLFVGMILYESLSISATWIVFTCACALSMLVMLSMVKWLERVAK","2183557 2181938","TIGR ID: PG2082","conserved hypothetical protein (possible transporter membrane protein)","Inner membrane, Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 5-470 are 27% similar to gb|AAF84697.1|AE004009_4 di-tripeptide ABC transporter membrane protein of Xylella fastidiosa, residues 5-510 are 27% similar to emb|CAB89436.1| putative peptide transporter of Streptomyces coelicolor A3(2), residues 5-470 are 27% similar to emb|CAB12175.1| similar to di-tripeptide ABC transporter (membrane protein) of Bacillus subtilis.This sequence is similar to BT0580.","
InterPro
IPR000109
Family
TGF-beta receptor, type I/II extracellular region
PTHR11654\"[1-513]TPTR2
InterPro
IPR005279
Family
Amino acid/peptide transporter
PTHR11654:SF6\"[1-513]TPepH_symport
TIGR00924\"[2-512]TyjdL_sub1_fam
InterPro
IPR007114
Family
Major facilitator superfamily
PS50850\"[8-509]TMFS
InterPro
IPR011701
Family
Major facilitator superfamily MFS_1
PF07690\"[12-173]TMFS_1
noIPR
unintegrated
unintegrated
SSF103473\"[1-513]TSSF103473


","BeTs to 6 clades of COG0477COG name: PermeasesFunctional Class: G,E,RThe phylogenetic pattern of COG0477 is AMTKYQVCEBRHUJGPo-INXNumber of proteins in this genome belonging to this COG is 5","***** IPB000109 (PTR2 family proton/oligopeptide symporters) with a combined E-value of 4.9e-35. IPB000109A 16-34 IPB000109B 38-90 IPB000109C 148-160 IPB000109D 423-470","Residues 6-179 are 32% similar to a (TRANSPORTER TRANSPORT TRANSMEMBRANE PEPTIDE PROTEIN) protein domain (PD002125) which is seen in YJDL_ECOLI.Residues 284-470 are 26% similar to a (TRANSPORTER TRANSPORT TRANSMEMBRANE OLIGOPEPTIDE PEPTIDE) protein domain (PD001550) which is seen in YCLF_BACSU.","","Thu Jun 14 13:02:07 MDT 2001","","Thu Jun 14 13:02:07 MDT 2001","Thu Jun 14 13:02:07 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:02:07 MDT 2001","Thu Jun 14 13:02:07 MDT 2001","","","Mon Jan 29 15:43:37 2001","Tue Dec 2 16:55:22 2003","Mon Jan 29 15:43:37 2001","Mon Jun 25 10:27:45 MDT 2001","Mon Jun 25 10:27:45 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Jun 14 13:02:07 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 74 to 468 (E-value = 3.9e-10) place PG1820 in the PTR2 family which is described as POT family (PF00854)","Mon Jun 25 10:27:45 MDT 2001","34541665","","","","","","1","","","PG2082" "PG1821","2184600","2183506","1095","TTGAGAATGTCCGCACAGACTTTTTTCTTCAAGCTACTGTTGCCTGCTTTGCTCCTTTGCACAGGAGTCGTTTCGGCACAAACCAACGTTGCTTCCTATGAGCCTGTCCGCTACAATGGAGAAGGGATCGTCTATGCCCTCCCACAGACACGCATCGTTGTACGGGCACAATTAGAACGTACTATCCACAAGCCCGGACCGCTCCATCTCTATGCCCAAAGGTACTTCGGACAGGAGGCCGGCGGAGAACCGAGCATCCGTTACCGTTTGGGTAGAGTGATAGCCCAATCTGTGGGAATACCCGATTTCGATCAAAAATATATAGTAGAGTTCCGTGCCGGTACGGTGGCAGACTTCGTAACCCTCAACAAAAGAGGTATCATAGTCGGTATCAATGCCGACAGGCAAGACCTGCCGTCACCATGTCCGGACACTCTCTTCCGTTTGCCGACAATACAGCCCGGCATAGAAAAACGTCCTGCTTTGCCTCAGGAATATACCGTGGCAGGCACGAAAGGAAAGCAAGCGGAAATCGCCGCAGCCCAAGTATTCCGCATACGTGAGAGCCTGATGGATTTGCTGACCGGTCAGGCTGAGAACATGCCCAAGGATGGAGCGGCTATGCAGCTGATGACACAAGAGCTGAAAGCACAGGAAACTGCTCTGCTGGAATTATTCTATGGAAAGGAAGAGATTGCATGGGAAGAACGCTCATGGACCATTGAACCTAAAAACGATATAAAAGGACAAATTCTTTTTCGATTCTCTCCACTCAGAGGGGTAGTCGATTCGGACGATCTTTCGGGAGAACCGGTTAGTTTCAGCCTTCGCACCACGGACAAGGCTCCGGAAATGGACGAAAAAGAGGCGGCCAAGTATGAAAAGAGCCTCAAGGGTATCGTATACAATCTGCCCGGAGCCGCTCGCATTACATTGGAACACAACCGCAATGTACTCTTCGATGAAGAGCTTCCTGTCACACAATTTGGCCGTAGACAGGCCTTAGCTCCCAAAATGTTCCGCGACAGGGGTCCGGCTATCCGTGTCGTATTCGATGAAAATACGGGAGCCATCCGTCAAATCAACGAAAACAAA","8.10","1.66","40927","LRMSAQTFFFKLLLPALLLCTGVVSAQTNVASYEPVRYNGEGIVYALPQTRIVVRAQLERTIHKPGPLHLYAQRYFGQEAGGEPSIRYRLGRVIAQSVGIPDFDQKYIVEFRAGTVADFVTLNKRGIIVGINADRQDLPSPCPDTLFRLPTIQPGIEKRPALPQEYTVAGTKGKQAEIAAAQVFRIRESLMDLLTGQAENMPKDGAAMQLMTQELKAQETALLELFYGKEEIAWEERSWTIEPKNDIKGQILFRFSPLRGVVDSDDLSGEPVSFSLRTTDKAPEMDEKEAAKYEKSLKGIVYNLPGAARITLEHNRNVLFDEELPVTQFGRRQALAPKMFRDRGPAIRVVFDENTGAIRQINENK","2184599 2183505","TIGR ID: PG2083","conserved hypothetical protein","Cytoplasm, Periplasm, Inner membrane","This sequence corresponds to gi:34397984 in Genbank.Its nearest neighbor in the NR database is gi:53712379 from Bacteroides fragilis YCH46.","
noIPR
unintegrated
unintegrated
signalp\"[1-26]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Mar 9 15:04:38 2005","Wed Mar 9 15:04:38 2005","Mon Jan 29 15:46:40 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 9 15:04:38 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541666","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Wed Mar 9 15:04:38 2005","","1","","","PG2083" "PG1821.1","2185041","2185463","423","GTGAACCTGGCGCGTGTCTCTTTATTTATGGCCCTCGATAAGGGCCTTTTGGGCTATCCGATTTATATACAAATGGCAATCAATCTATATATTAATCAAAAGCGATTTATATATAAATTAGAAACGATCTATATACAAATCGAAAACGGTTTATATATAAATCGCAAATCAACCTCCTACAAAGCGAATTGCAAGCCCCAAAAGGTCGCTTTCTTGTCTCTTTCACCTCAAAATCCGCTTCCTTTCGGATACTTATTTGGAATGATTCTAAACTCAGCTTCGTTGTTGAAAACTTTTTTGGCACGTATATTTCATAGAGCAACGAAGACTTTCAGACATCCGAAAGAATGGACTTCTGATACCTTTATGGAAATTTCCGAGAGACTGATGGTTCTCTGTCGGCCGAGCAAGTCTTGCCAGACT","","","16366","VNLARVSLFMALDKGLLGYPIYIQMAINLYINQKRFIYKLETIYIQIENGLYINRKSTSYKANCKPQKVAFLSLSPQNPLPFGYLFGMILNSASLLKTFLARIFHRATKTFRHPKEWTSDTFMEISERLMVLCRPSKSCQT","","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No significant hits in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-18]?signal-peptide
tmhmm\"[81-101]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Mon Jan 29 15:52:33 2001","Mon Jan 29 15:52:33 2001","Mon Jan 29 15:52:33 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","PG1821.1 is weakly similar to PG1357.1, a hypothetical protein, and to PG0340.1, a conserved hypothetical protein. Residues 24-104 are 49% similar to PG1357.1.","Tue Jun 5 13:37:55 MDT 2001","Tue Jun 5 13:37:55 MDT 2001","-51% similar to PDB:1HVQ CRYSTAL STRUCTURES OF HEVAMINE, A PLANT DEFENCE PROTEIN WITH CHITINASE AND LYSOZYME ACTIVITY, AND ITS COMPLEX WITH AN INHIBITOR (E_value = );-51% similar to PDB:1LLO HEVAMINE A (A PLANT ENDOCHITINASE/LYSOZYME) COMPLEXED WITH ALLOSAMIDIN (E_value = );-51% similar to PDB:2HVM HEVAMINE A AT 1.8 ANGSTROM RESOLUTION (E_value = );-51% similar to PDB:1KR0 Hevamine Mutant D125A/Y183F in Complex with Tetra-NAG (E_value = );","","","No significant hits to the Pfam 11.0 database","Tue Jun 5 13:37:55 MDT 2001","","","","","","","1","","","" "PG1822","2185675","2186655","981","ATGGAAACTGTAGTCAGTGGTATCAGGCCGACCGGCAATCTGCATTTGGGCAATTATTTTGGTGCTATTCGGAGTTTTCTGGATATGCAGCATCGATATAATTGCTTTTTCTTTATTGCTGATTGGCATTCGCTGACCACACATCCGCATCCGGATAATATAGTCCGCAATGTGCGTACGATACTGGCTGAATATTTGGCTTGCGGGATCGATCCGGAGAAGGCTACAATCTATGTACAGAGTGATGTAAGAGAGGTGCTCGAGCTTTATCTCTATCTGAATATGAATGCGTATTTGGGCGAGCTGGAGCGAACGACATCTTTCAAGGAAAAAGCCCGTAAGCAGCCGAACAATGTCAATGCCGGCCTGCTCACATATCCGACATTGATGGCAGCAGACATTCTGATCCATCGTGCCGTGAAAGTTCCTGTCGGAAAAGATCAGGAGCAAAACATGGAGATGGCACGCAAGTTTGCCCGCCGTTTCAATACGATCTATGAGGTGGACTTCTTCCCCGAACCCGAATCGTTCTCTCCGGGTGCAACAGCTTTGAAGGTGCCGGGCTTGGATGGATCCGGCAAGATGGGCAAGAGCGAAGGCAATGCCATCTATTTGGCCGATGATGCCAAAACGATTAGCAAGAAGGTAATGAAAGCCGTGACCGATGCCGGTCCCGAAGTGCCTAACAGCGTGAAGCCGGAGCCGGTGGAAAATCTTTTCTCCATGCTCCGTATCGTATCCTCGGATGAGGTCTATCGCCATTTCGATGACCTCTATAATAACTGTTCTATTCGCTATGGCGACCTCAAGAAGCAGTTGGCGGCAGACATTGTCGCCTTTACCACTCCTATAAGGGAACGAATATTAGAGATTCAGGCGGATGAAGCATTTTTGGACAGAGTGGTTCGAGAAGGAGCCGAACGCGCTCGTGAAAGTGCTGCACGAACCCTTGCCGAAGTACGCCACATCATCGGTTTTCGA","6.70","-1.19","36956","METVVSGIRPTGNLHLGNYFGAIRSFLDMQHRYNCFFFIADWHSLTTHPHPDNIVRNVRTILAEYLACGIDPEKATIYVQSDVREVLELYLYLNMNAYLGELERTTSFKEKARKQPNNVNAGLLTYPTLMAADILIHRAVKVPVGKDQEQNMEMARKFARRFNTIYEVDFFPEPESFSPGATALKVPGLDGSGKMGKSEGNAIYLADDAKTISKKVMKAVTDAGPEVPNSVKPEPVENLFSMLRIVSSDEVYRHFDDLYNNCSIRYGDLKKQLAADIVAFTTPIRERILEIQADEAFLDRVVREGAERARESAARTLAEVRHIIGFR","tryptophanyl t-RNA synthetase","Tryptophanyl-tRNA synthetase is likely to be acytoplasmically located homodimer with similarityto class-I aminoacyl-tRNA synthetases. Reaction: ATP + l-tryptophan + tRNA(trp) = AMP +pyrophosphate + l-tryptophanyl-tRNA(trp). TIGR ID: PG2085","tryptophanyl-tRNA synthetase","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 4-326 are 41% similar to gb|AAG42458.1|AF308467_4 tryptophanyl-tRNA synthetase of Klebsiella aerogenes, residues 4-326 are 41% similar to gb|AAG58484.1|AE005560_10 tryptophan tRNA synthetase of Escherichia coli O157:H7, residues 1-325 are 40% similar to gb|AAA22873.1| tryptophanyl tRNA synthetase of Bacillus stearothermophilus.","
InterPro
IPR001412
Family
Aminoacyl-tRNA synthetase, class I
PS00178\"[10-19]TAA_TRNA_LIGASE_I
InterPro
IPR002305
Domain
Aminoacyl-tRNA synthetase, class Ib
PF00579\"[1-282]TtRNA-synt_1b
InterPro
IPR002306
Family
Tryptophanyl-tRNA synthetase, class Ib
PR01039\"[14-30]T\"[64-83]T\"[140-161]T\"[194-204]TTRNASYNTHTRP
PTHR10055\"[7-326]TTrp_tRNA-synt_1b
TIGR00233\"[1-326]TtrpS
InterPro
IPR014729
Domain
Rossmann-like alpha/beta/alpha sandwich fold
G3DSA:3.40.50.620\"[1-216]TRossmann-like_a/b/a_fold
noIPR
unintegrated
unintegrated
SSF52374\"[1-326]TSSF52374


","BeTs to 17 clades of COG0180COG name: Tryptophanyl-tRNA synthetaseFunctional Class: JThe phylogenetic pattern of COG0180 is amtkYqvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 16-302 are 40% similar to a (SYNTHETASE AMINOACYL-TRNA LIGASE PROTEIN BIOSYNTHESIS) protein domain (PD001451) which is seen in SYW_ECOLI.","","Thu Jun 14 13:02:16 MDT 2001","","Thu Jun 14 13:02:16 MDT 2001","Thu Jun 14 13:02:16 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:02:16 MDT 2001","Thu Jun 14 13:02:16 MDT 2001","Wed Mar 22 15:34:20 MST 2000","Mon Jun 25 09:35:27 MDT 2001","Thu Apr 19 17:02:18 MDT 2001","Mon Jun 25 09:35:27 MDT 2001","Mon Jan 29 16:53:21 2001","","Mon Jun 25 09:35:27 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Apr 19 17:02:18 MDT 2001","-59% similar to PDB:1I6K 1.7 HIGH RESOLUTION EXPERIMENTAL PHASES FOR TRYPTOPHANYL-TRNA SYNTHETASE COMPLEXED WITH TRYPTOPHANYL-5'AMP (E_value = 1.9E_54);-59% similar to PDB:1I6L 1.7 HIGH RESOLUTION EXPERIMENTAL PHASES FOR TRYPTOPHANYL-TRNA SYNTHETASE COMPLEXED WITH TRYPTOPHANYL-5'AMP (E_value = 1.9E_54);-59% similar to PDB:1I6M 1.7 HIGH RESOLUTION EXPERIMENTAL PHASES FOR TRYPTOPHANYL-TRNA SYNTHETASE COMPLEXED WITH TRYPTOPHANYL-5'AMP (E_value = 1.9E_54);-59% similar to PDB:1M83 Crystal Structure of Tryptophanyl-tRNA Synthetase Complexed with ATP in a Closed, Pre-transition State Conformation (E_value = 1.9E_54);-59% similar to PDB:1MAU Crystal structure of Tryptophanyl-tRNA Synthetase Complexed with ATP and Tryptophanamide in a Pre-Transition state Conformation (E_value = 1.9E_54);","","","Residues 1 to 282 (E-value = 9e-82) place PG1822 in the tRNA-synt_1b family which is described as tRNA synthetases class I (W and Y) (PF00579)","Mon Jun 25 09:35:27 MDT 2001","34541667","","","","","","1","","","PG2085" "PG1823","2186714","2187130","417","ATGGATATTCAGATTCAAGGGCAGCTTATTCAGATACTGCCACTCAATTCGGGAGTCGGCAAGGCTTCCGGAAAGGAATGGAAAAAACAAGAGTACATACTGGAAACGCTCGATCAATACCCTCGCAAAATACACTTCAGCGTGTGGGGAGATCGTATTGATCCTTCCTATCAAGTAGGCGATCAGGTTACGGTCTGGGTCGATATTGAAAGCCGTGAGTTCAACGGCCGTTGGTACACCGATGTGAAGGCTTGGCGCATGGAGCGCGGATATATCGGGCAGCAAGGTCAGCAGCAGTTGCCACAGGAAATGCCTGCCGCCGGTGCTCCGACTTTTCCAACGCAACAACCGAGCATGCCGTCTCAGCCGGCAACGGGTTGGGCTTCCAACGCCGATGCGGGGGATGATCTGCCTTTC","4.60","-4.77","15725","MDIQIQGQLIQILPLNSGVGKASGKEWKKQEYILETLDQYPRKIHFSVWGDRIDPSYQVGDQVTVWVDIESREFNGRWYTDVKAWRMERGYIGQQGQQQLPQEMPAAGAPTFPTQQPSMPSQPATGWASNADAGDDLPF","2186713 2187129 [Shadowed by 2367]","TIGR ID: PG2086","conserved hypothetical protein","Periplasm","This sequence corresponds to gi:34397986 in Genbank.Its nearest neighbor in the NR database is gi:29346775 from Bacteroides thetaiotaomicron VPI-5482","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Mar 9 15:26:06 2005","Wed Mar 9 15:26:06 2005","Mon Jan 29 16:56:42 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 9 15:26:06 2005","-41% similar to PDB:1OHT PEPTIDOGLYCAN RECOGNITION PROTEIN-LB (E_value = );","","","No significant hits to the Pfam 11.0 database","","34541668","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Wed Mar 9 15:26:06 2005","","1","","","PG2086" "PG1825","2187133","2187603","471","ATGAAGATCGTACTGCTCGTTGTAGGCAAGACCGACAGCAAACTAATGGTTCAGGCAACGGAGGAATACATTCGTCGGTTGAGCCATTATGTTTCTTTCGAAGTGGAGGTAATACCCGATGTCCGTCTGGGTAGCAAGCTTTCTTCCGAACAGCAAAAGGATGCCGAAGGTCGGGAGATACTCGCTCGTCTTCGGCCGTCGGACAGCACCGTATTGCTCGATGAGCGAGGCAGAGAGTATTCCAGCATGGAGTTTTCAGCCTTTTTGCAGAAGAAAATGCTGATCGGCACCCGTCGAATGGTCTTTGTCATAGGAGGCCCATATGGATTTAGCCCTGCAGTGCAGGAGGCTGTAACCGATAGAATATCGCTCAGCCGAATGACTTTCTCTCATCAGATGATCCGCCTCTTCTTCACCGAACAGGTGTATCGTGCCATGACTATTCTCAACCATGAGCCCTATCATCATGAA","9.10","2.20","18146","MKIVLLVVGKTDSKLMVQATEEYIRRLSHYVSFEVEVIPDVRLGSKLSSEQQKDAEGREILARLRPSDSTVLLDERGREYSSMEFSAFLQKKMLIGTRRMVFVIGGPYGFSPAVQEAVTDRISLSRMTFSHQMIRLFFTEQVYRAMTILNHEPYHHE","2187132 2187602 [Shorter 2367 58 99]","TIGR ID: PG2087","conserved hypothetical protein","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 1-155 are 38% similar to gb|AAF85653.1| orfX of Staphylococcus aureus, residues 1-155 are 36% similar to emb|CAB16060.1| similar to hypothetical proteins of Bacillus subtilis, residues 1-155 are 37% similar to dbj|BAB07726.1| unknown conserved protein of Bacillus halodurans.","
InterPro
IPR003742
Family
Protein of unknown function DUF163
PF02590\"[1-155]TDUF163
noIPR
unintegrated
unintegrated
G3DSA:3.40.1280.10\"[1-156]TG3DSA:3.40.1280.10
PIRSF004505\"[1-156]TMT_bac
SSF75217\"[1-155]TSSF75217


","BeTs to 4 clades of COG1576COG name: Uncharacterized ACRFunctional Class: SThe phylogenetic pattern of COG1576 is ------v-eb-huj-------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 21-155 are 36% similar to a (PROTEIN CONSERVED SECRETED PUTATIVE) protein domain (PD010975) which is seen in Q45601_BACSU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon Jan 29 18:36:17 2001","Mon Jan 29 18:36:17 2001","Mon Jan 29 18:36:17 2001","","Fri Jun 1 10:57:12 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Jun 1 10:57:12 MDT 2001","-54% similar to PDB:1TO0 X-ray structure of Northeast Structural Genomics target protein sr145 from Bacillus subtilis (E_value = 4.8E_25);-55% similar to PDB:1VH0 Crystal structure of a hypothetical protein (E_value = 1.1E_24);-52% similar to PDB:1NS5 X-RAY STRUCTURE OF YBEA FROM E.COLI. NORTHEAST STRUCTURAL GENOMICS RESEARCH CONSORTIUM (NESG) TARGET ER45 (E_value = 8.2E_17);-54% similar to PDB:1O6D Crystal structure of a hypothetical protein (E_value = 2.4E_16);","","","Residues 1 to 155 (E-value = 3.8e-57) place PG1825 in the DUF163 family which is described as Uncharacterized ACR, COG1576 (PF02590)","Fri Jun 1 10:57:12 MDT 2001","34541669","","","","","","1","","","PG2087" "PG1826","2187668","2188723","1056","ATGAAGTATCTTTCTCTTATTCTTATCAGTATGGCTTCTTTTAGTTTTTCTCTTAGTGCCGGTAGTTGCTCTTCTTCGGCAAAGCATAATGACAGTATTCCCGAGACGAAGACAATATACTTTGCCGGTGGGTGCTTCTGGGGTACCGAGCATTTCTTCAAACAAGTGCGTGGTGTCGTGGCTACCGAAGTCGGGTATGCCAACGGCAATGTCGAGGATCCTTCGTATGAAGAGGTCTGTTCCCAAACCACAGGATTTGCCGAGACGGTAAGAGTCGAATATGATCCGAGTGAGCTATCGCTCTCTCTGCTGCTCGATCTTTTCTTCAAGACCATAGATCCTACAATCCTCAATAGACAGGGGAACGATGTCGGCTCTCAGTATAGAACGGGTATCTATTACACGGATCAAGAAGATCTCTCTCTCATTTCGTCCGCACTAAGTGCATTGGCTACGAAATACGATCGACCCATTGTTGTCGAGAATGAGCCGCTCAAGAACTTCTATCCTGCGGAAAACTATCATCAAGACTATTTGGATCATAACCCTCGCGGTTATTGTCATATCGATCCTTCTTTATTCGAATTGGCGAGGAAAGCCAATCCGGCCAGATTCTACAAGAAGGCCGATGATGCAGAGCTTCGTGCCCGGCTTACCCCCGAGCAGTATGCCGTCACACGCAACAATGCCACCGAACCGGCTTTTGACAACGAGTATTGGAATGAATTTCGAGAAGGTATTTATGTCGATGTTACTACAGGTGAACCGCTATTTCTTTCTACTGATAAGTTCGACTCCGGCTGTGGATGGCCGAGTTTCAGCAAGCCGATAGGGAAAGAGCTGATTTCCGAGCGTATCGATCGTTCTTTCGGAATGACTCGTACAGAAGTGCGTAGTACGACCGGCGATGCCCATTTGGGACACTTGTTCAATGACGGGCCACTGGAGAAAGGCGGACTCCGTTATTGCATCAATAGTGCCTCCCTTCGGTTTATTCCCAAAGAGGATATGAAGAAAGAAGGCTATGGCAGTCTTCTTCCTCTTTTGAACAAACGA","5.00","-10.57","39621","MKYLSLILISMASFSFSLSAGSCSSSAKHNDSIPETKTIYFAGGCFWGTEHFFKQVRGVVATEVGYANGNVEDPSYEEVCSQTTGFAETVRVEYDPSELSLSLLLDLFFKTIDPTILNRQGNDVGSQYRTGIYYTDQEDLSLISSALSALATKYDRPIVVENEPLKNFYPAENYHQDYLDHNPRGYCHIDPSLFELARKANPARFYKKADDAELRARLTPEQYAVTRNNATEPAFDNEYWNEFREGIYVDVTTGEPLFLSTDKFDSGCGWPSFSKPIGKELISERIDRSFGMTRTEVRSTTGDAHLGHLFNDGPLEKGGLRYCINSASLRFIPKEDMKKEGYGSLLPLLNKR","2187583 2188722","TIGR ID: PG2088","peptide methionine sulfoxide reductase","Outer membrane, Periplasm, Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 28-345 are 57% similar to emb|CAB83597.1| peptide methionine sulfoxide reductase of Neisseria meningitidis Z2491, residues 22-351 are 54% similar to gb|AAC23103.1| peptide methionine sulfoxide reductase of Haemophilus influenzae Rd, residues 14-351 are 50% similar to gb|AAD05793.1| putative peptide methionine sulfoxide reductase of Helicobacter pylori J99.This sequence is similar to BT2499.","
InterPro
IPR002569
Domain
Methionine sulfoxide reductase A
PD003489\"[53-187]TPMSR
G3DSA:3.30.1060.10\"[35-188]TMsrA
PF01625\"[37-192]TPMSR
TIGR00401\"[37-187]TmsrA
SSF55068\"[1-187]TMsrA
InterPro
IPR002579
Domain
Methionine sulfoxide reductase B
PD004057\"[211-345]TDUF25
PF01641\"[211-334]TSelR
TIGR00357\"[208-342]TMsrB
InterPro
IPR011057
Domain
Mss4-like
SSF51316\"[206-349]TMss4_like
noIPR
unintegrated
unintegrated
G3DSA:2.170.150.20\"[199-350]TG3DSA:2.170.150.20
PTHR10173\"[39-121]T\"[215-334]TPTHR10173
PS51257\"[1-23]TPROKAR_LIPOPROTEIN


","BeTs to 6 clades of COG0229COG name: Conserved domain frequently associated with peptide methionine sulfoxide reductaseFunctional Class: OThe phylogenetic pattern of COG0229 is --t-y--cebrhujgp-l---Number of proteins in this genome belonging to this COG is 1","***** PF01625 (Peptide methionine sulfoxide reductase) with a combined E-value of 2.5e-76. PF01625A 41-50 PF01625B 58-90 PF01625C 94-133 PF01625D 158-187***** PF01641 (Domain of unknown function) with a combined E-value of 8.9e-66. PF01641A 215-245 PF01641B 255-277 PF01641C 287-314 PF01641D 319-331","Residues 318-349 are 71% similar to a (PEPTIDE METHIONINE SULFOXIDE REDUCTASE) protein domain (PD186368) which is seen in O85224_HELPY.Residues 208-314 are 63% similar to a (PROTEIN REDUCTASE PEPTIDE METHIONINE SULFOXIDE METO) protein domain (PD004057) which is seen in YE55_HAEIN.Residues 40-189 are 50% similar to a (REDUCTASE METHIONINE SULFOXIDE PEPTIDE) protein domain (PD003489) which is seen in PMSR_MYCPN.","","Thu Jun 14 13:02:56 MDT 2001","","Thu Jun 14 13:02:56 MDT 2001","Thu Jun 14 13:02:56 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:02:56 MDT 2001","Thu Jun 14 13:02:56 MDT 2001","","","Tue May 22 18:24:32 MDT 2001","Wed Dec 17 11:03:08 2003","Wed Jan 31 10:24:07 MST 2001","Mon Jun 25 09:30:57 MDT 2001","Mon Jun 25 09:30:57 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue May 22 18:24:32 MDT 2001","-76% similar to PDB:1L1D Crystal structure of the C-terminal methionine sulfoxide reductase domain (MsrB) of N. gonorrhoeae pilB (E_value = 3.8E_48);-78% similar to PDB:1XM0 Solution NMR Structure of Methionine Sulfoxide Reductase B Using Minimal Constraint Strategy; Northeast Structural Genomics Target SR10 (E_value = 1.8E_45);-55% similar to PDB:2J89 FUNCTIONAL AND STRUCTURAL ASPECTS OF POPLAR CYTOSOLIC AND PLASTIDIAL TYPE A METHIONINE SULFOXIDE REDUCTASES (E_value = 5.5E_31);-50% similar to PDB:1FF3 STRUCTURE OF THE PEPTIDE METHIONINE SULFOXIDE REDUCTASE FROM ESCHERICHIA COLI (E_value = 9.0E_26);-50% similar to PDB:2GT3 Solution structure and dynamics of the reduced form of Methionine Sulfoxide Reductase A from Escherichia coli, a 23 kDa protein (E_value = 9.0E_26);","","","Residues 37 to 192 (E-value = 2.9e-89) place PG1826 in the PMSR family which is described as Peptide methionine sulfoxide reductase (PF01625)Residues 211 to 334 (E-value = 4.2e-87) place PG1826 in the SelR family which is described as SelR domain (PF01641)","Wed Dec 17 11:03:08 2003","34541670","","","","","","1","","","PG2088" "PG1827","2188783","2189964","1182","ATGGCATATCTCGGAACCAAAGCCAAGTGGCTGTTACTACTCTCCTCCATCGTGCTTCTTGCAATAGTCGGAGTCTGGATTTTTCAATATTCCGGTTATGGGGAGCGATTCGAAATTGTCGACGAATTGGGTGGCAATATCTTTCCGTCCGCCATACTGTCGGTGGCCACGACCGATGCTGAAGTAATCAAACCGGTCGAAGGCCTGTACGTGGGCAATCCGAAGTCCGTTATCAGTATTCGCCTGAAAACGCGAAGGGCCAATAGCCGTGTGCGTGTGGAAGTAGCCGAAACGCCTTTTTTCTCCCAGTCCGTTTCCGAATTCGTCTTGGATAAGTCAGGCTCTACCTATACCATATACCCGGACATTATATGGAAGTACGAAGCTCTTCGCAACAACAACCAAGCCGGACCGGTCAGTGTGGCTATAAAAGTGGAGATAAATGGTGCGAACTGGGGACAACAGGTGCGGACATTCTCTGTCAGAAGTCTCAACGAGTGTCTGTTGGGTTATATGAGTGGAGGGCGGGTATTCTGCGAAACGGGGATCTTCTTTGCCGCCTACGTCAATGAAGAGAATCCTAAAATCGACAAGCTGCTTCGTGAAGCACTCAACACGCGTATCGTCAATCGCTTCTCAGGTTACCAAAGTGCCCAGAATCCTGTGGACAGACAAGTGTATGCTCTTTGGAATATATTGCAGAAAAGACAGTTCCGCTACAGCTCGGTAGCCAATTCCAGCTTGTCCAGCAATGTCGTTCTCTCCCAGCGTGTGCGCACCTTCGATGATGCTTTGGAGTCCTCTCAGATCAACTGCGTAGATGGTAGCGTGCTCTTTGCATCCCTGCTGCGGGCTATCAATATCGAACCTATCCTCGTTCGGATGCCCGGCCATATGTTCGTCGGTTATTACACGGATATATCCAAAAAAGAAAAAACATTCCTGGAGACAACGATGATCGGTGATGTCGATTTGGACGACTTTTTCCCTGATGAGCAGTTGGATTCGACGATGATAGGCAAATCCCAAAATCAGATGTCCAAGCTGACTTTCGAGAAGTCGAAAGAATATGCCAACAAGAAATATCAGGAAAACGAAGCTGACATTCACTCCGGCAAGTCGGGCTATATGTTCTTGGAAATATCCAAAGACGTGCGAAGGCGAATCCAATCCATCGGCAAG","8.70","3.36","44447","MAYLGTKAKWLLLLSSIVLLAIVGVWIFQYSGYGERFEIVDELGGNIFPSAILSVATTDAEVIKPVEGLYVGNPKSVISIRLKTRRANSRVRVEVAETPFFSQSVSEFVLDKSGSTYTIYPDIIWKYEALRNNNQAGPVSVAIKVEINGANWGQQVRTFSVRSLNECLLGYMSGGRVFCETGIFFAAYVNEENPKIDKLLREALNTRIVNRFSGYQSAQNPVDRQVYALWNILQKRQFRYSSVANSSLSSNVVLSQRVRTFDDALESSQINCVDGSVLFASLLRAINIEPILVRMPGHMFVGYYTDISKKEKTFLETTMIGDVDLDDFFPDEQLDSTMIGKSQNQMSKLTFEKSKEYANKKYQENEADIHSGKSGYMFLEISKDVRRRIQSIGK","2188782 2189963","TIGR ID: PG2089","conserved hypothetical protein","Outer membrane, Cytoplasm","This sequence corresponds to gi:34397989 in Genbank.Its nearest neighbor in the NR database is gi:53712870 from Bacteroides fragilis YCH46.","
noIPR
unintegrated
unintegrated
signalp\"[1-34]?signal-peptide
tmhmm\"[10-30]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Dec 4 15:36:50 2003","Wed Mar 9 15:29:53 2005","Wed Jan 31 10:29:32 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Dec 4 15:36:50 2003","-43% similar to PDB:1G0U A GATED CHANNEL INTO THE PROTEASOME CORE PARTICLE (E_value = );-43% similar to PDB:1G65 CRYSTAL STRUCTURE OF EPOXOMICIN:20S PROTEASOME REVEALS A MOLECULAR BASIS FOR SELECTIVITY OF ALPHA,BETA-EPOXYKETONE PROTEASOME INHIBITORS (E_value = );-43% similar to PDB:1JD2 Crystal Structure of the yeast 20S Proteasome:TMC-95A complex: A non-covalent Proteasome Inhibitor (E_value = );-43% similar to PDB:2F16 Crystal structure of the yeast 20S proteasome in complex with bortezomib (E_value = );-43% similar to PDB:2FAK Crystal structure of Salinosporamide A in complex with the yeast 20S proteasome (E_value = );","","","No significant hits to the Pfam 11.0 database","","34541671","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Wed Mar 9 15:29:53 2005","","1","","","PG2089" "PG1827.1","2190206","2189910","297","TTGCACAGCGGATTACAAAGGTGGTGGAATCCTCAAATCTTGTCTTTCGGAGTTTACGCTATCCGCAGTGCGGCTTTTCATATAAGCATAAGGAATGAGGGTGTGTCGAAAATCGCTTCAGCAGCGTTTTCGGCACACTTTTTTATGTCAGAAAGGTGTACTGAGAGCCTGCATAGCCGTAAGCCACATAGCAATCCGGCGTATTCTTATTTCAAAAGGACGATGCGGCAAAAGCGATGCTACTTGCCGATGGATTGGATTCGCCTTCGCACGTCTTTGGATATTTCCAAGAACATA","","","11589","LHSGLQRWWNPQILSFGVYAIRSAAFHISIRNEGVSKIASAAFSAHFFMSERCTESLHSRKPHSNPAYSYFKRTMRQKRCYLPMDWIRLRTSLDISKNI","","NO TIGR ID corresponds to this gene.","hypothetical protein","Periplasm, Cytoplasm","No significant hits in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-25]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Wed Jan 31 10:30:44 MST 2001","Wed Jan 31 10:30:44 MST 2001","Wed Jan 31 10:30:44 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG1828","2190373","2191278","906","ATGGTTACACTTTCGGATCCTAATCGGCGTTCTCGACGTATCAAACGTATTACGATAGTCGGTTGCTTAGGTAATCTGCTTTTGACGATCGGGAAGTTTTTCTCCGGTTTTGTCGGGCATAGCGGAGCCATGATTGCCGATGCGGTACACTCGTTGTCTGATCTGCTGACCGATTTCGTGGTTTTCATTTTTATCTCCATTTCGGGAAAACCATCCGATAAGAACCACGATTACGGACATGGTAAGTTCGAGACCCTCGCCACTGCGATCATTGCTGTTACGCTGATCATCATCGGAGCTATGCTCTGCTCCGATGGTCTGACCAAGGTATATCGCTATCTCCGCTTTGGGGACGAATTGGCTCGTCCCGGATTGATAGCCTTGCTTATGGCCTTTGTCTCCATTGTGGCCAAAGAGTGGCTGTTCCGCATAACGCGATGTGTCGGAAAAGAGGAAAATAGTCGTTCAGTCATAGCCAATGCCTGGCACCACCGTAGTGACGCTTATACCTCTGTGGCTACTTTCATCGGGATTGGCTGTGCTTTTCTTTTGGGGCGCGGTTGGATGATCCTCGAACCGCTATCGGCTGCTGTAGTAAGTGTCTTTATCATCAAGGTAGGTTTTCAAATGGCCGTTCCGGCTTTCCGCGATCTGCTCGAACAGAGCTTGCCGGATGATATTGAAGAAGAGATAGAAAAAATCATTTGTTCGGAATCGATGGTAAAAGGTGTTCGTCGGATCCGCACTCGCAATATCGGTAATTACTATGCTGTCGAAGCCGATATTTTGATGGATGGAGGCCTCTCTGTGGCACTATCTCATGCTGCTACGCAGAGGGTTGAGAAGCTGCTGCGTGGACGATACGGCCAACCCACACATATAGTCATCCACGTCGAGCCGTTTTCA","8.60","5.93","33316","MVTLSDPNRRSRRIKRITIVGCLGNLLLTIGKFFSGFVGHSGAMIADAVHSLSDLLTDFVVFIFISISGKPSDKNHDYGHGKFETLATAIIAVTLIIIGAMLCSDGLTKVYRYLRFGDELARPGLIALLMAFVSIVAKEWLFRITRCVGKEENSRSVIANAWHHRSDAYTSVATFIGIGCAFLLGRGWMILEPLSAAVVSVFIIKVGFQMAVPAFRDLLEQSLPDDIEEEIEKIICSESMVKGVRRIRTRNIGNYYAVEADILMDGGLSVALSHAATQRVEKLLRGRYGQPTHIVIHVEPFS","2190342 2191277","TIGR ID: PG2090","cation efflux system protein","Inner membrane, Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 8-301 are 30% similar to emb|CAB12354.1| similar to cation efflux system of Bacillus subtilis, residues 10-301 are 34% similar to dbj|BAB04431.1| cation efflux system of Bacillus halodurans, residues 7-298 are 30% similar to gb|AAC63637.1| unknown protein of Arabidopsis thaliana.","
InterPro
IPR002524
Family
Cation efflux protein
PTHR11562\"[1-302]TCation_efflux
PF01545\"[18-302]TCation_efflux
TIGR01297\"[14-302]TCDF


","BeTs to 12 clades of COG0053COG name: Predicted Co/Zn/Cd cation transportersFunctional Class: PThe phylogenetic pattern of COG0053 is AmT-YqvceBr-----o---xNumber of proteins in this genome belonging to this COG is 1","***** PF01545 (Cation efflux family) with a combined E-value of 1.8e-11. PF01545A 41-68 PF01545B 192-220","Residues 149-298 are 28% similar to a (PROTEIN TRANSMEMBRANE ZINC TRANSPORTER CATION TRANSPORT) protein domain (PD001369) which is seen in O82250_ARATH.Residues 138-226 are 37% similar to a (CHROMOSOME XVI READING FRAME) protein domain (PD037634) which is seen in YM43_YEAST.Residues 23-84 are 46% similar to a (PROTEIN TRANSMEMBRANE ZINC TRANSPORTER) protein domain (PD001602) which is seen in P96691_BACSU.","","Thu Jun 14 13:03:19 MDT 2001","","Thu Jun 14 13:03:19 MDT 2001","Thu Jun 14 13:03:19 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:03:19 MDT 2001","Thu Jun 14 13:03:19 MDT 2001","","","Wed Jan 31 10:36:39 MST 2001","Mon Jun 25 09:27:14 MDT 2001","Wed Jan 31 10:36:39 MST 2001","Mon Jun 25 09:27:14 MDT 2001","Mon Jun 25 09:27:14 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Apr 12 12:11:52 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 18 to 302 (E-value = 1.6e-76) place PG1828 in the Cation_efflux family which is described as Cation efflux family (PF01545)","Mon Jun 25 09:27:14 MDT 2001","34541672","","","","","","1","","","PG2090" "PG1829","2191320","2191670","351","ATGACGACTGAAATCAAATTGGAAGAAATGCGTTTTTATGCCCGACACGGTGTGCTTGAGCAAGAGCGACAAGTGGGGAACCGGTTTGTGGTCAATCTCTCCTTGTCCGTGGATGTCACACAAGCGGTTATTTCAGATGCCATCGAAGACACCATCCACTACGGACACGTTTACGAAGCCGTCAAAGAAGAGATCTTACAGCCCTCAAATCTTATCGAGCATGTCGCCGGACGAATTTTGCAAAGAATCCGACACGACTTTCCGCAGGTGAACGAAGTCACGGTAAGCCTGAGTAAGCTCAATCCCCCTATTGGTGCGGACATACGATCGGCTACGATCGTCCTGCGAGGG","6.00","-2.80","13215","MTTEIKLEEMRFYARHGVLEQERQVGNRFVVNLSLSVDVTQAVISDAIEDTIHYGHVYEAVKEEILQPSNLIEHVAGRILQRIRHDFPQVNEVTVSLSKLNPPIGADIRSATIVLRG","2191277 2191669","TIGR ID: PG2091","dihydroneopterin aldolase protein","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 1-104 are 42% similar to sp|P56740|FOLB_STAAU dihydroneopterin aldolase of Staphylococcus aureus, residues 4-115 are 36% similar to emb|CAA04239.1| dihydroneopterin aldolase of Streptococcus pyogenes, residues 1-83 are 47% similar to prf||2204217C dihydroneopterin aldolase of Staphylococcus haemolyticus.","
InterPro
IPR006156
Family
Dihydroneopterin aldolase family
TIGR00525\"[3-117]TfolB
InterPro
IPR006157
Domain
Dihydroneopterin aldolase
PF02152\"[5-117]TFolB
TIGR00526\"[2-117]TfolB_dom
noIPR
unintegrated
unintegrated
G3DSA:3.30.1130.10\"[1-115]TG3DSA:3.30.1130.10
PTHR20941\"[1-117]TPTHR20941
PTHR20941:SF3\"[1-117]TPTHR20941:SF3
SSF55620\"[1-116]TSSF55620


","BeTs to 4 clades of COG1539COG name: Dihydroneopterin aldolaseFunctional Class: HThe phylogenetic pattern of COG1539 is ----y--cEbrhuj----in-Number of proteins in this genome belonging to this COG is 1","***** BP04848 (DIHYDRONEOPTERIN ALDOLASE DHNA LYASE FO) with a combined E-value of 6.4e-10. BP04848 2-47","Residues 4-115 are 36% similar to a (DIHYDRONEOPTERIN ALDOLASE DHNA LYASE FOLATE BIOSYNTHESIS) protein domain (PD004848) which is seen in O33725_STRPY.","","Thu Jun 14 13:03:41 MDT 2001","","Thu Jun 14 13:03:41 MDT 2001","Thu Jun 14 13:03:41 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:03:41 MDT 2001","Thu Jun 14 13:03:41 MDT 2001","","","Wed Jan 31 10:40:40 MST 2001","Mon Jun 25 09:23:11 MDT 2001","Wed Jan 31 10:40:40 MST 2001","Mon Jun 25 09:23:11 MDT 2001","Mon Jun 25 09:23:11 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Apr 20 12:42:04 MDT 2001","-63% similar to PDB:1DHN 1.65 ANGSTROM RESOLUTION STRUCTURE OF 7,8-DIHYDRONEOPTERIN ALDOLASE FROM STAPHYLOCOCCUS AUREUS (E_value = 7.8E_18);-63% similar to PDB:1RRI DHNA complex with 3-(5-amino-7-hydroxy-[1,2,3] triazolo [4,5-d]pyrimidin-2-yl)-benzoic acid (E_value = 7.8E_18);-63% similar to PDB:1RRW DHNA complexed with 9-methylguanine (E_value = 7.8E_18);-63% similar to PDB:1RRY DHNA complexed with 2-amino-4-hydroxy-5-carboxyethylpyrimidine (E_value = 7.8E_18);-63% similar to PDB:1RS2 DHNA complex with 8-Amino-1,3-dimethyl-3,7-dihydropurine-2,6-dione (E_value = 7.8E_18);","","","Residues 5 to 117 (E-value = 1.3e-24) place PG1829 in the FolB family which is described as Dihydroneopterin aldolase (PF02152)","Mon Jun 25 09:23:11 MDT 2001","34541673","","","","","","1","","","PG2091" "PG1830","2193003","2191747","1257","ATGAAGCAGTTTTCTTTTCGTCTGTCTCATTTTTTTCTATTTCTTTCCTTCTTATGGTCGGTGCCGTCTGTCGGCCAGACCCGAGCTTTTGATTCGCGAGTGCAGTCGCTTCTTGTTACTCCTACAGGCACAGAACAGTTGAGGCTATATCCCTACTACCATATAAATAGTGGGGAAGGACTCCGGATTAGTTTTGATCTTATGGGCGATGAGAGTATGACGCTGGGATACAGACTGCAGCACTGTGGTCACGATTGGCAGGCGAGTCCGGTTTCTCCGGCTGAAGCTGTTTCCGGCTTTCTGGAGAACGAATTCGATCCGCCTGCCGTTAGCAGAGCTACTTTGGTCAACTATGTTCATTACGAACTGTCTTTGCCCAATGCGAATTGCACCCCCAAGCTCTCGGGGAATTATCTCATGACCGTATTCGACGTTTATGATCCGGACGAAACGCTTCTTACGATCGCCTTTCGTGTGGTAGTTCCGTTGGCTTCCCTCAAGGGTTTGCAAACGTCCGTTACTTATGAAGATATACACGGTCGTCATCAGCAAGTCAATGTTGAGGTAGATCTGAAGGGCTTACGGATCCTGTCCCCCTCGGAGGAGCTTACCCTTGTCGTGGGACAAAACGGGCGCGAGTCCGAGATGCGTTCGCTCTCCGGACCTTCGAGTATTGCAGGTAATACCATTGTATATGATCAGCATGCCGGAGCTTTATTTCCGGCAACCAATGTTTACAGGAAGGCAGAGATGCTCAGCGATAGTTACAATGGTATGGGGGTGTACCGATCTTACTCGCGCAACGGGCACTATGTGATGGAGTTGTATCCCGACAAAAACAGAGCCGGATTACCCTATCAGTTCGAACAAAACAATTTCGGTAGACGTATCATTCGTACTACCGATGGTGCTAATAGTGCTACCGAAGGAGACTATTATGAGGTTATCTTCTCTTTCGAGAGTGAAAAGTTGCCGGGGCCGGTCCTTTTGTCCGGAGAGGCTTTCGATTTTCTCCCGATGAGCGAACGCGAGCTTTTCTATGATGCTTCGGAGCAGATGTACACTCGTACCCTCATGATGAAACAGGGATACTTCAATTACCTCTACATTCTTCAAACGGAGGATGACAATCTGCTCACTCAGACAGCCCTGACCGAGGGCAATCATTACGAGACTGAGAACAGATATACCGTCTTTCTCTATGCCAAGACACCGGCTGATATTTATGAAAGCCTCATAGCCGTTTTGGAAGTAAAA","4.80","-16.65","47524","MKQFSFRLSHFFLFLSFLWSVPSVGQTRAFDSRVQSLLVTPTGTEQLRLYPYYHINSGEGLRISFDLMGDESMTLGYRLQHCGHDWQASPVSPAEAVSGFLENEFDPPAVSRATLVNYVHYELSLPNANCTPKLSGNYLMTVFDVYDPDETLLTIAFRVVVPLASLKGLQTSVTYEDIHGRHQQVNVEVDLKGLRILSPSEELTLVVGQNGRESEMRSLSGPSSIAGNTIVYDQHAGALFPATNVYRKAEMLSDSYNGMGVYRSYSRNGHYVMELYPDKNRAGLPYQFEQNNFGRRIIRTTDGANSATEGDYYEVIFSFESEKLPGPVLLSGEAFDFLPMSERELFYDASEQMYTRTLMMKQGYFNYLYILQTEDDNLLTQTALTEGNHYETENRYTVFLYAKTPADIYESLIAVLEVK","2193002 2191746","TIGR ID: PG2092","conserved hypothetical protein","Outer membrane, Cytoplasm","This sequence corresponds to gi:34397992 in Genbank.Its nearest neighbor in the NR database is gi:48855481 from Cytophaga hutchinsonii.","
noIPR
unintegrated
unintegrated
signalp\"[1-29]?signal-peptide
tmhmm\"[10-30]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Mar 9 15:36:24 2005","Wed Mar 9 15:36:24 2005","Wed Jan 31 10:42:30 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 9 15:36:24 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541674","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Wed Mar 9 15:36:24 2005","","1","","","PG2092" "PG1831","2197961","2193417","4545","TTGCCACTTGAAAGTAAAGTTGTCTGCGTGAGTCAAAGGAAAAAACTGTCAGCCGGTCTCATCCGGTTTATCCGTCGTTATCGCAAGGCTATGCGTCGCTCCAAATGGATCGTCGTGGCCGTGCTGACTGTTGCTTTTTGCCTGTTGATCCTTCCCAATCTGATTTTGCAAATTCCGTCAGTGAAGCGTTCCGTCGCCGGACGTGTGCAGACCGAGCTATCCAAAGCACTCGGAACGCATGTCCGCATCGGGCACATCAGCATTGGTTGGTGGCGACAAATGGAGATCGACGATATTGTCATCTTCGATCGTGCCCGTCGTCCTGCGGTGTCAGCCGAACGTTTGACCGGGGGGCTGGATCTGCTCCCTCTTTTGAAAGGCCGTCTGAGCTTCTCCTCTGCTCGTCTGTTCAAAGGCGAACTCGATGTATATCGTTCGCGTCCCGATACGGCTCTGAACATTCAGTTCCTTCTGGATGCTCTGAAAAGTAAGAATCCGGAAGAGCCGAGCCGGCTACGACTCAATATCAATACCATCTTGCTCAGGAACTGCCGGCTCTCTGCTTCGGGATTGTACAAGACCCAATCCGACACATTGGGATTGCTCGACTTGAATGCCAAAGTACGTCTTTTCCAAGCGGACAGTACGGGACTGAAAGCTCAGCTGCGCCATCTTTCTTTTCTCGAAAAAAATACCGGTCTCGATCTCAAAGAACTGCATGCCGATGTCAGTCTTCGTGGCGACACTTTGGGAGTGGCTCGTCTTCATATCTCTTTGCCGAATAGTCACATCGGTATGGTCTCCGGATACTGTGTTCTCTCGCCCGAAAACTCTGCCTTGCCTGCCATAAGGGTGACGGACTTGGGCGGACGGATCCGTCCCTCCGACCTGAAAGGTTTGCTCCCGGCACTCGATACGATGGATGATATATTGAATCTCTCTGTGCCCGAGCTGACAGTCGCTTCCGGCGAAGCGGTTCTGCCTGAAATCAGTATGAACTATGGCGATGAACTGACCTTGCAGGCAGGCATAGGGTTGGCAGAAATAGGAAAAAAGGAACGGATGCATGTCAGACTCCGGTTGGATGAGCTTAAGCTCGGAGTCCGGACCTACATGCTGGCAGAACGTCTTTTTCCCGATAAGCTCCCCACTCAAATGCGCCACTTGGGTGCTATCGATATTATGGCAGCCGCTAACGGCCGGCTGGACGATCTGCGCCTGAAAACTCGTGTGGAGACGGATGCCGGAGCTTTGACCATACAGGGCAGCATCGGCCTCGATTCTCTCTGGCGACTTGCCGATGTAGATGCTCATGCGACTACCGAAAGACTGGAACTCAAGCTCATGGCAGACCGGCACGATTGGCCTGAACATGTGGCGTTCGACCTGAAGATGAAGGCCCGACTGGCTGCCGGCAATCTCCTCTCGGGAAGTGTGGAGGGACGCGTGTCGCACCTGACTTTCCGAGGCTATACCTATGAGGACCTGACGATCGACTTACAGGCCGACAAGGGGCAGTGGTCAGGCATCCTGAATATGAACGACCCCAATGGCCATATCCGGCTATCCTCTGCCGGAGAGGGGCTGCCTTTCTCTTCGAGTTCTTCCCGGTTCGAATGGAATCTGACAGCGCACAAACTTCGTCCCGATCGACTTTTGCCCGGCTTCGGACTGCCATCGGCCGATGCTCTTCTGATTTCTTCCGGAGAATTGGTCGGGAGTCGTATTGACGATCTGACAGGAACGATACGAATAGATACCCTGGATTGGCAAACCTCCGACAAAGAACTGCATCTGCACAATGTGAAACTGGCTATGGCAAGGGTGGAGCGACATAGCTCCATTACCCTCAGTTCGCCTTTCCTTGAGGGAGCACTGCATGGCGAGTTCACATTGTCCAAGCTGCCTTCGATGCTCGAAGGAGTGGTTGGCGCACATCTTCCTGCACTTGCGGGCCATAGGTCGCAGGCAAGAGTGCCGACTGAGGATGTCCGTCTGCGTTTGGCGTTGGACGGCTCTTTGCCCAAGGAAGTGTGCAGCTTCTTCCGGTTGCCTTTGGCCGAAGCGGATTCTATCAGGATCAGGGCAGCCTATTCCGAATTGCTTCGAAGCCTCGATCTGCACATTCGTACCGACAGGCTCATGACTATGAACAAAGAGCTACGGGATACGGAGGTGACCTTGAACTCATCCACCGGCAAGGCCGAACTCATCTGTCGGTCCGACTTGTATGTGAATGGCGATGCCACGACACGAGACCTCAACCTGAAAGCATCAGTGGCAAACGACAGCATCCGTGCCCGACTGGATATGGGACAGGACAAGCGAGGAGCGAAAAACGGATTTATATCGCTGCTCACAAACTTCCATCGGGACGAGGACTCATCGCTGAATACTCATATTCGTCTCGATCGCTCTACGGCACGCATCGGGCGGTATGAGTGGCAGATAGCCTCGGCCGAGGCTATGTTGGCTCCTGAAAGGGTGGTGATCAGCGACCTCTCTATCAAGAGTGAAGGCAAGGCTATTGAAGCGGAGGGAGTACTCAGCAGTTCGCCCTCCGACTCGCTTCGTGTGCGTGTGGATCATATCAGTCTGAAGTACATATTGGATTTGGCCGGAGTGGACTTCGACATGCTCGATGTGGAAATGACGGGAGAGGCTGTCTTGAGCGACATCGCAGACCGGCAGTTCATGCAGGCACGCATTACAGGCGAGAGCTTCACTGTCAACGGTATAGACGTGGGCCCCATATCGGCTTTCGGCTCCTGGGAGAAATCTACGCAGAGGATCCTTTTGGATGCATCGGTACACAATCCCGATGGTACGAGTACGTCGGCTTGGGGGTATATCCGCCCATTCAATCCCCACGCCGGTCTGGATCTGCGATTCGATGCCAAGCATGCCGATGTGGCCTTCATCGGACCTTTCTTGTCGGAGTTCTGTCATAAGCTGGAGGGACATGCTTCGGGAAACATGCGGCTCTTCGGCGATTTTAGCGATCTGACCATAGAAGGGGAGGTTATGGCCGAGCATGTGACTTTCGGAGTCAAGGCTTTGAATACGGAGTATAAATGCGATGGGCAGAAAGCCGTATTCACTCCTACTCGGATGCGCTTCGAGAATATGCTGGTGAGCGATCCGGACGGGCATACGGCCCGACTCAATGCACATATCTCGCATCGCGCTTTCGATGACATCAAAGTGGATCTGAAAGTCAGTGAAGCTCGTAATATACTTGCTTATAACGTGCCGGAGCGGGACAACCCCAATATACATGGCCGGGTTTATGTGTCGGGTGCTGCATATTTGCGCGATGTGCCCGGAGGGATGAGATGCGACGTCAATCTGATTTCCGAAAAAGGAACCCATATCGTGCTGAACTTTACGCAGCCTACGACAGCGGAAGAGTATCGTTTCTTGCGATTCGTAGATCCGAAAAGCAGCCGTGAGCGAGCGAGACAAGAAACTTCGCCGGATCGTCCTTCTCTACTTCTACCTGCTACGGGAGGAGATCCGGAGACGGATTTCCACTTGGTCATGAATGTAGGCGTGACACCGGATGCAGAGGTGGATTTGATACTGGATCCGCAGACCGGCGATGGCTTACGCGGATCAGCCGGTGGAGATTTGCGTATCGATTACCATACATTGGGGGATCTGAATGTATTCGGAGGGCTGGAACTGTTGTCGGGCACTTATAATTTCAACCTCCGGCAGATTGTCCAAAAACGTTTCAGCATCAAAGAAGGCAGTAGTGTGAATTTTGCCGGCAATCCGATGCACGCAACTCTGAATGTAACGGCCGAATACAATCTGACAGCCAATCTGAACGACTTGGACGAATCTCTCGTGAGCGACGTCAGACGGACTACCATTCCGGTGAATTGCCTGCTTCAGATCAATGGTGCCATGTTGCAGCCTGCTGTCAGCTTCGACATCAAGCTACCCAACTCCGACAGCGAATTGGAGCGTCGGGTTCGCAGTCTCATCCACAGCGAAGATTCGATGACGAAGCAGATCGTTTATCTTCTTGTCTTAGGAAAGTTTTATACGCCGGAGAATGTCTATAATTCGGGAAGCGGTACAGACAACTGGACGGCAGTGGCCACCACCACTCTGTCGCAGCAGCTCACCAATATGCTCGGAAGCCTTAGTGACAAAGTGCAGATAGGAACGAGCATCAAGACGACCAACACCTCTTTTCAGGACACCGATATAGAACTGCTCCTGAGTAGTCGTTTGCTGAATAACCGTCTCCTTATCAACGGGAATGTGGGCTATCGGGACAATCCTAATCTACAGAATACCTATGTGGGCGAATTTGATGCCGAATATAAAATCAATCCGTCCGGCTCCATTCGTATTAAAGCCTACAACCACTATAACAACCTCTATCAATATCTGCGCCAGTCCCTGACGACGCAAGGCCTTGGCCTTATCTTCAAGTATGATTTCGATGGCCGGCGGCTTCGTACTAAGAGAGCCGGGGAAGCCCGTAGCGGCATCGATTCTCTTACACGACCCGACTCCGTAAGAGCGCAA","7.00","0.00","167799","LPLESKVVCVSQRKKLSAGLIRFIRRYRKAMRRSKWIVVAVLTVAFCLLILPNLILQIPSVKRSVAGRVQTELSKALGTHVRIGHISIGWWRQMEIDDIVIFDRARRPAVSAERLTGGLDLLPLLKGRLSFSSARLFKGELDVYRSRPDTALNIQFLLDALKSKNPEEPSRLRLNINTILLRNCRLSASGLYKTQSDTLGLLDLNAKVRLFQADSTGLKAQLRHLSFLEKNTGLDLKELHADVSLRGDTLGVARLHISLPNSHIGMVSGYCVLSPENSALPAIRVTDLGGRIRPSDLKGLLPALDTMDDILNLSVPELTVASGEAVLPEISMNYGDELTLQAGIGLAEIGKKERMHVRLRLDELKLGVRTYMLAERLFPDKLPTQMRHLGAIDIMAAANGRLDDLRLKTRVETDAGALTIQGSIGLDSLWRLADVDAHATTERLELKLMADRHDWPEHVAFDLKMKARLAAGNLLSGSVEGRVSHLTFRGYTYEDLTIDLQADKGQWSGILNMNDPNGHIRLSSAGEGLPFSSSSSRFEWNLTAHKLRPDRLLPGFGLPSADALLISSGELVGSRIDDLTGTIRIDTLDWQTSDKELHLHNVKLAMARVERHSSITLSSPFLEGALHGEFTLSKLPSMLEGVVGAHLPALAGHRSQARVPTEDVRLRLALDGSLPKEVCSFFRLPLAEADSIRIRAAYSELLRSLDLHIRTDRLMTMNKELRDTEVTLNSSTGKAELICRSDLYVNGDATTRDLNLKASVANDSIRARLDMGQDKRGAKNGFISLLTNFHRDEDSSLNTHIRLDRSTARIGRYEWQIASAEAMLAPERVVISDLSIKSEGKAIEAEGVLSSSPSDSLRVRVDHISLKYILDLAGVDFDMLDVEMTGEAVLSDIADRQFMQARITGESFTVNGIDVGPISAFGSWEKSTQRILLDASVHNPDGTSTSAWGYIRPFNPHAGLDLRFDAKHADVAFIGPFLSEFCHKLEGHASGNMRLFGDFSDLTIEGEVMAEHVTFGVKALNTEYKCDGQKAVFTPTRMRFENMLVSDPDGHTARLNAHISHRAFDDIKVDLKVSEARNILAYNVPERDNPNIHGRVYVSGAAYLRDVPGGMRCDVNLISEKGTHIVLNFTQPTTAEEYRFLRFVDPKSSRERARQETSPDRPSLLLPATGGDPETDFHLVMNVGVTPDAEVDLILDPQTGDGLRGSAGGDLRIDYHTLGDLNVFGGLELLSGTYNFNLRQIVQKRFSIKEGSSVNFAGNPMHATLNVTAEYNLTANLNDLDESLVSDVRRTTIPVNCLLQINGAMLQPAVSFDIKLPNSDSELERRVRSLIHSEDSMTKQIVYLLVLGKFYTPENVYNSGSGTDNWTAVATTTLSQQLTNMLGSLSDKVQIGTSIKTTNTSFQDTDIELLLSSRLLNNRLLINGNVGYRDNPNLQNTYVGEFDAEYKINPSGSIRIKAYNHYNNLYQYLRQSLTTQGLGLIFKYDFDGRRLRTKRAGEARSGIDSLTRPDSVRAQ","2197960 2193416","TIGR ID: PG2094","conserved hypothetical protein","Cytoplasm, Outer membrane, Inner membrane","No significant hits in gapped BLAST other than to BT0921.","
InterPro
IPR003439
Domain
ABC transporter related
PS00211\"[320-334]?ABC_TRANSPORTER_1
noIPR
unintegrated
unintegrated
signalp\"[1-49]?signal-peptide
tmhmm\"[36-56]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Dec 4 10:26:39 2003","Thu Dec 4 10:26:39 2003","Wed Jan 31 10:48:02 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 817-1481 are 21% similar to PG1833, a hypothetical protein.","Tue Jun 5 13:42:24 MDT 2001","Tue Jun 5 13:42:24 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Jun 5 13:42:24 MDT 2001","34541675","","","","","","1","","","PG2094" "PG1832","2200710","2198386","2325","ATGAAAGTATTACGGCAAGTATTCCTCCCCATCCTTTTTGTCCTACTGACAGGTGCCTGCTCCACCACAAAGAATCTGCCGGAAGGCGAACAGCTGTATATCGGAATGGGCAAGACACAGATACTCCGGCAGGACAAGAGCCACGCCGGCCAACAGGCTCTGACCGAAGTGGAGAGTACACTGAAAGTTACACCCAATGGAGCTATTTTCGGCAGTGCAAGTGCCTCCTTACCCAAGATACCATTCGGGCTATGGCTATACAACAGCTTCGTGGGGGATTCCACTGTCATTTCGAAATGGATATTCGACAAGTTTGCAGCCAAGCCGGTTTTCATCAGTCAGGTCAAATCCGATAGCCGGGCTAAGGTGGCGACGAACATCCTCCGCGAACACGGGTACTTCGATGCTAAAGTAAAAAGCAGTGTGACCACTCTGAAAAAGGACTCGCTCAAAGCCAAAATCTCCTATACGGTGGATATGGCCTCTCCTTATCATTACGACAGCATCATTCCCTTACCGATCAGCACTTTCCCCGACAGCATTCTGGCTTACAGGCAGACTCCGTCTTTGATCAGGAAAGGAGACCAGTTCAATTTGGCAAAGCTGCACGAAGAGCGTCAGACCATCAGTGCCCTGCTGAGAGACAATGGTTACTACTACTTCCGCCCACAGGATATTATCTACGAAGCCGATACCCTCCTCGTAAGAGGTGCCGTATGCCTGCGAGCCAAGCTCTCGGAAGATACTCCACCCCAAGCCATGCGCCCGTGGAGGATAGGGAAACGGACAGCAGTCCTGCTCGGAATGAACGGAGAAAGCCCGACAGACTCGCTCGAAGTGGAGGATATGAAAGTCCTTTACTATCGTAAAATGCCGGTTCGCCCCAAGATTTTGGCCAAACGCTTTCGTTTCTTCTCCGGCAATCTGTATCGGCAGAAAGACGATGAGACGACACGCAAATCCTTGGCTCGTTTGGGAGCCTTCTCCGTTATCGATCTCAATTTTTTGCAACGCGATTCCATTTCCGGCCTTTTGGATGTGCGACTGCTAACCACCCTCGACAAACCTTGGGATGCATCATTAGAGACCTTGTTCACGAGCAAAAGCAATGACTTCATCGGTCCCGGACTGAATTTTGCTCTTGCTCGGCGCAATGTATTCGGCGGAGGAGAAAATCTTTCTTGGAATATCGGTGGATCGTATGAGTGGGAGACCGGCAATCGTCCCGAAAATAGCAGCAATCGGCTGATCGATATAAATTCGTACAACATGAATACGGCCGTGAACCTCTCGTTTCCCTCGATTGTATTTCCCGGTCTGCTGGATAAATACTATTACTACCCCACGACTACGACTTTTCAGGCTTCTGCCACCGCGCTGAACAGGGCACACTACTTTAGCATGTACTCTTTCGGCTTTTCGACCACCTACGAATTTCAGCCCTCCAAGGAACACCGGCATGCTATTTTCCCGCTCAAGCTCAACTACAACCTCCTGGGGCATCAGACAGAAACTTTCCAGGCCATTACGGCGAACAATCCGCCCCTGCTGCTCAGCCTTCAGAGTCAGTTCCTTGCTCAAATGGGGTATATCTATACGTTCAACAAATCCGTTTCAGAGAAAAGTCCTCATCATCTTTGGATGCAATTCGGACTATCCGAGGCAGGCAATCTCCTGAATCTGATCTATCTGGCAGCCGGCAAGAAGTACAGCGACACCAAGAATTTCGTCGGCGTCCCCTTCTCTCAGTTCATCAAAGCCACGGGAGAACTGCGCTATTCCTATACCATAGACCGCAATCAGTCACTGGCAACCCGTTTCGGGACAGGCGTGATATATAGCTATGGCAATATGCGAGTGGCACCCTATAGCGAGCAGTTCTATGTAGGCGGTGCCAATAGTATCAGAGCTTTCACCGTCCGTAGCATCGGCCCCGGACGGTTCAATCCGGATTCCGACAATCAGTATTCCTATTTGGATCAGGTGGGCGAATTCAAACTCGAAGCCAACGTGGAATATAGAGGCAAGCTTTTCGGGGATCTCCACGCAGCCGTTTTCCTCGATGCGGGCAACGTTTGGCTCTTGAGGGAGGATTCTTCCCGTCCGGGCGGTGCTCTGTCCGAAGTGGGATCGGTGAGCAATTTCCTGAATAGCATCGCTCTCGGCACCGGTGTCGGCCTTCGCTACGATCTGGCATTTCTCGTGGTTCGTGTCGATGTCGGCTTCGGTCTCCACCTTCCTTACAATACGGGTAAGAAAGGTTACTACAATATCCCACGCTTTAAGGATGCCATCGGTTTCCATTTGGCTGTCGGCTATCCCTTC","10.20","21.07","86977","MKVLRQVFLPILFVLLTGACSTTKNLPEGEQLYIGMGKTQILRQDKSHAGQQALTEVESTLKVTPNGAIFGSASASLPKIPFGLWLYNSFVGDSTVISKWIFDKFAAKPVFISQVKSDSRAKVATNILREHGYFDAKVKSSVTTLKKDSLKAKISYTVDMASPYHYDSIIPLPISTFPDSILAYRQTPSLIRKGDQFNLAKLHEERQTISALLRDNGYYYFRPQDIIYEADTLLVRGAVCLRAKLSEDTPPQAMRPWRIGKRTAVLLGMNGESPTDSLEVEDMKVLYYRKMPVRPKILAKRFRFFSGNLYRQKDDETTRKSLARLGAFSVIDLNFLQRDSISGLLDVRLLTTLDKPWDASLETLFTSKSNDFIGPGLNFALARRNVFGGGENLSWNIGGSYEWETGNRPENSSNRLIDINSYNMNTAVNLSFPSIVFPGLLDKYYYYPTTTTFQASATALNRAHYFSMYSFGFSTTYEFQPSKEHRHAIFPLKLNYNLLGHQTETFQAITANNPPLLLSLQSQFLAQMGYIYTFNKSVSEKSPHHLWMQFGLSEAGNLLNLIYLAAGKKYSDTKNFVGVPFSQFIKATGELRYSYTIDRNQSLATRFGTGVIYSYGNMRVAPYSEQFYVGGANSIRAFTVRSIGPGRFNPDSDNQYSYLDQVGEFKLEANVEYRGKLFGDLHAAVFLDAGNVWLLREDSSRPGGALSEVGSVSNFLNSIALGTGVGLRYDLAFLVVRVDVGFGLHLPYNTGKKGYYNIPRFKDAIGFHLAVGYPF","2200709 2198385","BLAST hit to last 200 amino acids in sequence, may be an incorrectly predicted orf.TIGR ID: PG2095","conserved hypothetical protein","Outer membrane, Cytoplasm","Two weak hits in gapped BLAST to last 200 amino acids , e.g.; residues 585-747 are 29% similar to gb|AAF84041.1|AE003957_2 conserved hypothetical protein of Xylella fastidiosa, residues 549-740 are 27% similar to gb|AAD21534.1| unknown of Zymomonas mobilis.This sequence is similar to BT3807.","
InterPro
IPR000184
Family
Bacterial surface antigen (D15)
PF01103\"[385-775]TBac_surface_Ag
noIPR
unintegrated
unintegrated
PS51257\"[1-20]TPROKAR_LIPOPROTEIN


","BeTs to 7 clades of COG0729COG name: Predicted outer membrane proteinFunctional Class: MThe phylogenetic pattern of COG0729 is -----QvcE--Huj--olinxNumber of proteins in this genome belonging to this COG is 3","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Fri Dec 26 13:43:04 2003","Fri Dec 26 13:43:04 2003","Fri Dec 26 13:43:04 2003","Wed Jan 31 10:52:57 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 12-775 are 26% similar to PG0877, conserved hypothetical protein (possible outer membrane protein).","Tue Jun 5 13:44:19 MDT 2001","Thu Apr 5 17:46:24 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 375 to 775 (E-value = 2.2e-35) place PG1832 in the Bac_surface_Ag family which is described as Surface antigen (PF01103)","Thu Apr 5 17:46:24 MDT 2001","34541676","","","","","","1","","","PG2095" "PG1833","2205508","2200721","4788","ATGGGTCGTATCAAGCAACGTTGGAAGCGTATTCTCTTCTGGGTGCTCATCTCACCCTTGTTGCTCGTACTGCTCGTGGCAGGACTGCTTTATCTCCCTCCCATACAGCAATGGGCTGTAGGGATAGCTACACAGAAGGCTTCCGAAGCTACCGGTATGCAGATAGGCATCGGACGCATCCGTCTGGGCTTTCCGCTGCATCTCTCCTTGCAGGACATCACAGCCGTAAAGGTGCAGGGCGACACACTGGCAGATATAGGCTCCCTACGGGTCAGCGTCTCGGTACTACCGCTCCTCCGGCGGCAAGTGGAAGTGCCGGAGCTTAAGCTGCAAGATGCCTCCATCCACTATACTGACAGCTTGGGGCTGATGGATCTGAGGCTGAAAGCCAAGTCGATCCGAGCAGCTCACATAGCTATTGATCCCGAAGCCAAACGAGTAGTGCTGGGGCGGTGGCAACTATTCGATACCGACATCGCATACTTCAGTGCAGATACGACGGCAGCCGATACGACTCAGAAAGAGCCATTCGACTGGCAATTCGAGTTGGACAGGCTGGATCTGAAGAATATATCCGCTGAAGTCCGGATGCCACTTGACAGTGTACTCCTCAAGACATTCGTCGGAAAGGCGGCAATAGCGAAGACCAAAATGGATATTGCAGACATGCTCTATCAGGTCGGCATGGCGCAGTTGGACCGGACTGTTTTGTCTTACGATACGGACGAGGGGGAAGCTTCGCCCACCTCTTTCGACTATCGCCACATTGCTTTGAACGATGTTTCCCTCCAAGCCAAAGATATTTGTTTCCACGACGGTGATATGGAGCTTCAGTTGGTCAACGGATCCCTACGGGAGCGCGATCGGTTCGAACTACAGCGGTTGTCCGGGAGGTATAGGATGGATCGTTTCGGTTTCCTTCTGACAGACCTTTCCCTTGCCACCGGGCACAGCCATATCAACGGAGAAGTCCGACTACCATGGAGTATCTTCGAAAAAGATCCGACAGCCATGATCAATCTCTCTATGGATGCTTCGATCGGATTGGAGGATGTAAACTATTTGGCCGGCGATAATTTCCAACTACCCTCACGCAGGTTAGTGCGTTATCCCCGGACTCCGGTGGATATAGTGATACAATGCACAGGCACACTCGATGAATTGGAAGTAGAGCATATGTCCTTGTTCTGGGACGGAATGGCCGATATGGATGGACATGGAGTGTTTACGAAGTTGCTTGACGATCGCAATCGCGCCGGCAACTTTGTGCTGAACATGGGTTTTCATCAGGATGCATCAGGCCTTTTGGCGTTTTACGACAAGGCTCTTTACGAACGCTTCGCTATTCCGGCGGGCATGACTGTCGCTGCCGAGCTGAAGATCAGACGAGGAGTGTACAGCGGTCAAGTAAAGCTGACAGAGCGTTCCGGCAGCGTCCGTATCGATGGCGACTATCTGATGGGTACGGATAAGTATCGGCTCGATATGCAGGTGGACGGTCTGAATTTCAGTGCCTTCATGCCGAAGGATAGTATCGGTTCCATGCAGGCAGTGCTTCATGCCGAAGGGCGTGGATTCGATCTTTTCAATAAACGTACTGTCTCCACCATACACACATCGGTCAAACACATCCGTTGGAAAGAACGAGATTTGGACAGTATCACTTTCGATGCGGCATTGAACGAAGGAGTGCTCTTCGCTTCATTCAATAGCACCAACTCCTTCCTGAACGGGAGTATGCAATTGGATGCCCTCCTTGGCAAAAACAAACTGGACGGCTCTGTGATGGTGCGGATGGATTCGGCGGATTTCAATGCATTGGGCTTTGCAGACACCACTTTTGCGGCAGCTTTTGTCCTTGAGGGTCATGTGAAAAGCGATTTGGCTCAGACACATCGGTTCGAAGCCTCGGTACGCGATTGTTACATGCAGCTCGAACGCTATAAAGTAATACCGGAGCGAATAGATATATTAGCCGATACCGATCCCGATAGCATCCGTCTGGATCTCGTGTCGGGCGACTTGAAAATGGCTCTCAGAGTGGGAGAAGGCATAGATGCCGTTACGGTCGTGTCCCAATCTCTCGGGAAGAAGATAGAGATATTCCGCAACGACTCTATTCAGCGTCTGCGACTCTCTTCGATTTTTCAAGAGCTGCCTCATGCGACCTTTACCTTGCAAGCCGATCGCTACAATCCGCTCCACGACTTGATGGAAGTAAACGGTATGAAATACAACTCCATCCGTGGCAAGCTGACAGTTTCGCCCGAAAACGGGGTGGAGGGGTATATGGATTTGCAGGGTTTGCAGCGCGATACGCTCCGCGTCGATCGTTTACATCTGGACATTGCTACGCTCTCACAATACGGGATGTTCGCGCCGGATTCAGCCAATTCGGCAGAGGTGGCGGATTCGATTTTGAACAAGTATGATCGCATGATCCGACTCACACTGACCATGGATAAGAATCGTTTCCGTCGTCAACCGGCCATGTATGGCAAAGTGGTGGCGGATGCTACCCTCCAGGGGTTGAATCTGCGCCTGAATTTGGCCGATGGAGCAAAACAGGATGCCTACCGCATTGGCATTCACGGATTCTGGGACGAAAGCGGCTACGGGCTCAACTTCATCGAATCGGAGCCCGTCGTGTTGGCCTATAATCGTTTTATTGCCAGCAAGGACAATCGTATCTTCTATCGAAACGAGGACAAACGTCTGTCTGCCTCACTTGAACTAAGCAGCGAGGATGGGCAATACTTGTCCGTGCAGACCAATGATACCATTCCTGATTTGGAAGAGATAGGCCTGAATATCCGCAACCTGCGGCTGCAACAATACGTCCGGATGTCTCCTCTTCCTAATATAGCCGGCAGATTTTTCGCTTATGCACGACTATCCCGTACGGGGGGAGAGAACGGTATCACTACGATTACCGGAGATCTCTCTGTCAATGAGTTCGAATTTGAAGGCAAGTCTATCGGCAACATTGCATCCTCTCTGTTCTATGAACCCCGTAACGATCATTCGCACTACGTGACAGCAGAGATAAGCTACAATGGAAATGCTGCCCTCAATCTCGATGGCATCTATCATGGAGGCATCCGTGAGAACAATCTCGATATGGCTGCCATCCTTAACGGATTCCCGCTCGCCATCGCCAATCCATTTATCGGAGCGGAAAGAGCTTCCCTCTCCGGTTTCATCGAGGGAAAACTTGCTATCGCCGGTAAAACGGATAGCCCTCTGATCGATGGTCAACTGAATATGCGGGATGCATCGGTCTATTCGCCGATGATCGGCAATACATTCTATTTTTCGGACAAGCCACTGGTCTTCGATCGTCACAAATTGGTTTTCGACAATTATCAGATACGCGCCCAAGAAAAGGCGCAAGACGGTCTTAATCTTAATGGAGAAGTAATCCTGACAGGAGCCAGAGCCATGACAGCCAATCTGAAGATGCTGGCAGATGAGATGACCGTGTTGGACAGCAAAAGAAATCAGGGCGACTTGCTGTACGGCAAACTGATTGCCTCCACCGATCTTTCCCTTCGCGGTCCTCTGCAAGCACTTGCGATTTCGGGCTCTCTGGATATTCACGGTGGCACTTCATGCACGTATGTGTATACTGGTGCAGATCTGGAAACGGAAAGTCGGATGGGCGATGTGGTGAATTTCATGGACTTTTCCGATACGATCATGATCCGATCGCAGGCTGAGATGGAAAAGGAAAGAGCATCCTTCGGTGGCATGAATATGCTTGTTCGGATTCATATTGATCCGGTTGTACAGTTGGGTGTCGATCTCTCGGCCGGACATCAAGACTATCTGGAGTTGCAAGGAGGAGGAGACATGACTTTCACTATGCCGGCTTACGGGGAAATGAGTTTGACCGGACGGTACAGTATGAGTGGTGGCGGCACCATGCGCTATACGCTCCCCGTCGTGGGTAAGCAGGTCTTCACTATCGACCCATCGAGCTACGTACAGTGGAGCGGCAATGCACAAGAGCCTTACGTCAACTTCAAAGCAGTGCAGCGAGTACGTGCCGATGTGATGGAGAGCGGTAGCAAGACGTCGAGAAAGGTGAATTTCGATGTTGGTATCATCGTCAAAGAAACGCTCAAGAATATGGATTTGGTGTTTGATGTCGAAGCACCGGAGGACTTCTCTATCCAAACCCAACTGCGAAGTATGGGGCCGGAAGAGCGTTCCAAGCAGGCCATCGGACTCTTGGCAACAGGCTCTTATTTGGCTTCGCAATCGAGTGGGTTCAACTTTGACAATGCACTCAGCAGCTATGCTCAGGGAATGATCAACAGTGCTTTGGGCAAGGTATTCGATGGCTCCGGACTGAACATCGGTATGGAAAGTCACGATGGCACCGATGGCGGCGGTACATATACGGACTTCACGTACAGCTTCAGCAAACAGTTCTATGACAACAGGATCCGTGTCGTGATCGGAGGATCTGTCGCTTCCGGCTCCAATGTGCCGACCAATAAGGAAAGGACTTTGGTGGACAACGTATCCGTGGAGTACCGTCTGGACAAATCAGGAGCACAGCACCTCAAACTCTTCCACAAGAAGAACAATGAAAATCTGCTCGAAGGAGAGATAACGGAGACCGGTATCGGCTATGTGATCAGTCGAAAGTTGGCGCGCTTGTCCGATCTGTTCCGTTTCGGCAAGAAGAAAGAGACGAAAACCATAGTGTCGAAAGCAGAAGCTCTCAAACCCGAAGAGGAGCCGGTATCCGTGCAGACGGATATCATTCCGACAAAGCGA","5.50","-27.02","177442","MGRIKQRWKRILFWVLISPLLLVLLVAGLLYLPPIQQWAVGIATQKASEATGMQIGIGRIRLGFPLHLSLQDITAVKVQGDTLADIGSLRVSVSVLPLLRRQVEVPELKLQDASIHYTDSLGLMDLRLKAKSIRAAHIAIDPEAKRVVLGRWQLFDTDIAYFSADTTAADTTQKEPFDWQFELDRLDLKNISAEVRMPLDSVLLKTFVGKAAIAKTKMDIADMLYQVGMAQLDRTVLSYDTDEGEASPTSFDYRHIALNDVSLQAKDICFHDGDMELQLVNGSLRERDRFELQRLSGRYRMDRFGFLLTDLSLATGHSHINGEVRLPWSIFEKDPTAMINLSMDASIGLEDVNYLAGDNFQLPSRRLVRYPRTPVDIVIQCTGTLDELEVEHMSLFWDGMADMDGHGVFTKLLDDRNRAGNFVLNMGFHQDASGLLAFYDKALYERFAIPAGMTVAAELKIRRGVYSGQVKLTERSGSVRIDGDYLMGTDKYRLDMQVDGLNFSAFMPKDSIGSMQAVLHAEGRGFDLFNKRTVSTIHTSVKHIRWKERDLDSITFDAALNEGVLFASFNSTNSFLNGSMQLDALLGKNKLDGSVMVRMDSADFNALGFADTTFAAAFVLEGHVKSDLAQTHRFEASVRDCYMQLERYKVIPERIDILADTDPDSIRLDLVSGDLKMALRVGEGIDAVTVVSQSLGKKIEIFRNDSIQRLRLSSIFQELPHATFTLQADRYNPLHDLMEVNGMKYNSIRGKLTVSPENGVEGYMDLQGLQRDTLRVDRLHLDIATLSQYGMFAPDSANSAEVADSILNKYDRMIRLTLTMDKNRFRRQPAMYGKVVADATLQGLNLRLNLADGAKQDAYRIGIHGFWDESGYGLNFIESEPVVLAYNRFIASKDNRIFYRNEDKRLSASLELSSEDGQYLSVQTNDTIPDLEEIGLNIRNLRLQQYVRMSPLPNIAGRFFAYARLSRTGGENGITTITGDLSVNEFEFEGKSIGNIASSLFYEPRNDHSHYVTAEISYNGNAALNLDGIYHGGIRENNLDMAAILNGFPLAIANPFIGAERASLSGFIEGKLAIAGKTDSPLIDGQLNMRDASVYSPMIGNTFYFSDKPLVFDRHKLVFDNYQIRAQEKAQDGLNLNGEVILTGARAMTANLKMLADEMTVLDSKRNQGDLLYGKLIASTDLSLRGPLQALAISGSLDIHGGTSCTYVYTGADLETESRMGDVVNFMDFSDTIMIRSQAEMEKERASFGGMNMLVRIHIDPVVQLGVDLSAGHQDYLELQGGGDMTFTMPAYGEMSLTGRYSMSGGGTMRYTLPVVGKQVFTIDPSSYVQWSGNAQEPYVNFKAVQRVRADVMESGSKTSRKVNFDVGIIVKETLKNMDLVFDVEAPEDFSIQTQLRSMGPEERSKQAIGLLATGSYLASQSSGFNFDNALSSYAQGMINSALGKVFDGSGLNIGMESHDGTDGGGTYTDFTYSFSKQFYDNRIRVVIGGSVASGSNVPTNKERTLVDNVSVEYRLDKSGAQHLKLFHKKNNENLLEGEITETGIGYVISRKLARLSDLFRFGKKKETKTIVSKAEALKPEEEPVSVQTDIIPTKR","2205507 2200720","TIGR ID: PG2096","conserved hypothetical protein","Outer membrane, Inner membrane, Cytoplasm","No significant hits in gapped BLAST with exception to a strong match to BT3806.","
InterPro
IPR007844
Family
AsmA
PF05170\"[8-120]TAsmA


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Fri Dec 26 13:41:15 2003","Fri Dec 26 13:41:15 2003","Wed Jan 31 10:55:21 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 877-1548 are 21% similar to PG1831, a hypothetical protein.","Tue Jun 5 14:12:00 MDT 2001","Tue Jun 5 14:12:00 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Jun 5 14:12:00 MDT 2001","34541677","","","","","","1","","","PG2096" "PG1834","2206555","2205617","939","ATGAACAACGAAAACAACTTTTCTGTCTTCTCCGGGACAAATTCCCGTTATCTTGCGGAAAAGATCTGCAACAGTCTGGGTTGCCCTCTGGGGCGAATGAATATCGAGCACTTCGCCGATGGTGAATTTGCCGTATCCTATGAGGAGAGCATTCGCGGCCGGGATGTCTTCCTCGTACAGTCCACATTCCCATCTTCGGACAACCTGATGGAGCTGCTCCTGATGATCGATGCAGCCAAACGAGCTTCCGCACACTACATTACAGCTGTCATCCCCTACTTCGGATGGGCCAGACAGGACAGAAAGGACAAGCCCCGTGTATCTATCGGCGCCAAGCTGATCGCCGACCTGCTAAGCAAGGCAGGTATTACCCGTCTGATCACGATGGACCTACATGCGGATCAGATTCAAGGTTTCTTCGATGTGCCGGTGGATCATCTCTACGGCTCTACGGTTTTCATGGAATACATCCGCAAGAATATGCCCTTAGAGAACCTCGTAGTAGCTACGCCTGATGTCGGAGGTACGAAGCGTGCCAATAGCTATGCCAAACATCTCGGTGTGCCGATGGTAATCTGTCACAAAAGCAGGCTCAAAGCCAATGAGATAGCCGAGATGCGTATCATCGGGGATGTGCAGGACAAGGACGTACTGCTCGTAGACGATATTGTGGACACTGCCGGCACGATAACCAAGGCTGCTGACCTGATGAAGGAAAACGGAGCACGCAGCGTATGTGCCATCGCCAGCCATGCCGTGATGAGCGATCCTGCTTCGATGCGAGTAGACCAGTCCACTCTGAAGGAGATGATCTTCACGGATTCGATCCCCTATCCGCACAAGTGCGAGAAGGTGAAGATTCTCTCTGTGGCCGACTTGTTCGCAGAAGCGATCAAGCGTGTTTGCAGCCATGAGTCTATCACCACGCTCTATTATTTC","6.60","-2.11","34767","MNNENNFSVFSGTNSRYLAEKICNSLGCPLGRMNIEHFADGEFAVSYEESIRGRDVFLVQSTFPSSDNLMELLLMIDAAKRASAHYITAVIPYFGWARQDRKDKPRVSIGAKLIADLLSKAGITRLITMDLHADQIQGFFDVPVDHLYGSTVFMEYIRKNMPLENLVVATPDVGGTKRANSYAKHLGVPMVICHKSRLKANEIAEMRIIGDVQDKDVLLVDDIVDTAGTITKAADLMKENGARSVCAIASHAVMSDPASMRVDQSTLKEMIFTDSIPYPHKCEKVKILSVADLFAEAIKRVCSHESITTLYYF","2206554 2205616","TIGR ID: PG2097","ribose-phosphate pyrophosphokinase","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 7-311 are 50% similar to gb|AAD06246.1| phosphoribosyl pyrophosphate synthetase of Helicobacter pylori J99, residues 7-311 are 50% similar to gb|AAD07793.1| phosphoribosylpyrophosphate synthetase of Helicobacter pylori 26695, residues 7-311 are 49% similar to emb|CAB73175.1| ribose-phosphate pyrophosphokinase of Campylobacter jejuni.This sequence is similar to BT0748.","
InterPro
IPR000836
Domain
Phosphoribosyltransferase
PF00156\"[141-271]TPribosyltran
InterPro
IPR000842
Family
Phosphoribosyl pyrophosphate synthetase
PS00114\"[130-145]TPRPP_SYNTHETASE
InterPro
IPR002375
Family
Purine/pyrimidine phosphoribosyl transferase
PS00103\"[217-229]FPUR_PYR_PR_TRANSFER
InterPro
IPR005946
Family
Ribose-phosphate pyrophosphokinase
TIGR01251\"[7-312]TribP_PPkin
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.2020\"[5-172]TG3DSA:3.40.50.2020
PTHR10210\"[3-312]TPTHR10210
PTHR10210:SF14\"[3-312]TPTHR10210:SF14
SSF53271\"[71-305]TSSF53271


","BeTs to 15 clades of COG0462COG name: Phosphoribosylpyrophosphate synthetaseFunctional Class: F,EThe phylogenetic pattern of COG0462 is AmtkYqvcebrhujgpol---Number of proteins in this genome belonging to this COG is 1","***** IPB000842 (Phosphoribosyl pyrophosphate synthetase) with a combined E-value of 5.8e-92. IPB000842A 37-79 IPB000842B 106-151 IPB000842C 165-197 IPB000842D 201-253 IPB000842E 288-311","Residues 38-202 are 59% similar to a (SYNTHETASE PYROPHOSPHOKINASE RIBOSE-PHOSPHATE) protein domain (PD001439) which is seen in KPRS_HELPY.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Jan 31 11:05:52 MST 2001","Wed Dec 3 09:16:44 2003","Wed Jan 31 11:05:52 MST 2001","Fri May 18 13:26:09 MDT 2001","Fri May 18 13:26:09 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri May 18 13:26:09 MDT 2001","-63% similar to PDB:1DKR CRYSTAL STRUCTURES OF BACILLUS SUBTILIS PHOSPHORIBOSYLPYROPHOSPHATE SYNTHETASE: MOLECULAR BASIS OF ALLOSTERIC INHIBITION AND ACTIVATION. (E_value = 2.1E_68);-63% similar to PDB:1DKU CRYSTAL STRUCTURES OF BACILLUS SUBTILIS PHOSPHORIBOSYLPYROPHOSPHATE SYNTHETASE: MOLECULAR BASIS OF ALLOSTERIC INHIBITION AND ACTIVATION. (E_value = 2.1E_68);-63% similar to PDB:1IBS PHOSPHORIBOSYLDIPHOSPHATE SYNTHETASE IN COMPLEX WITH CADMIUM IONS (E_value = 2.1E_68);-62% similar to PDB:2H06 Crystal structure of human phosphoribosyl pyrophosphate synthetase 1 (E_value = 4.5E_66);-62% similar to PDB:2HCR crystal structure of human phosphoribosyl pyrophosphate synthetase 1 in complex with AMP(ATP), cadmium and sulfate ion (E_value = 4.5E_66);","","","Residues 141 to 271 (E-value = 1.3e-28) place PG1834 in the Pribosyltran family which is described as Phosphoribosyl transferase domain (PF00156)","Fri May 18 13:26:09 MDT 2001","34541678","","","","","","1","","","PG2097" "PG1835","2208025","2206745","1281","ATGCGCTTTGATGAATTGAATTTAGGAGATGAAGTATTGGATGGTCTCGATGCCATGAATTTCATCGAGACCACACCTGTGCAGGCTGCAACCATCCCACCCATTCTGGAGGGTCGCGATGTGATCGCTTGTGCCCAGACCGGCACCGGCAAGACGGCAGCCTATCTGCTCCCCATACTGGATCGCCTGAGTGCAGGCGAGTTTGCCTCCGATGTGGTGAATGCCGTGATCATGGCTCCCACTCGCGAACTGGCGCAGCAAATAGATCAGCAAGTGGAAGGGTTTTCTTACTTCATGCCGGTATCGGCCGTAGCCATATACGGGGGTACGGACGGGGTGGCATGGGAGCAGCAACGTCGGGGGATGGCTATGGGGGCGGACATCGTGATAGCCACACCGGGACGTCTGATCTCGCATCTGAATCTCGGTTCGGCCGACCTCTCCCACGTCTCCTACTTCGTATTGGACGAAGCCGACCGCATGCTGGACATGGGTTTCTTCGATGACATCATGCAGATATACAAGCAGCTGCCGAGTTCGTGCCAGACGGTTATGTTTTCGGCTACGATGCCCCCCAAGATCCGCAAGCTGGCAGCATCTATTCTAAGGGATCCGATAGAGGTGGAGATCGCCATCAGCCGTCCGCCCGAGAGCATCATGCAGAGCGCATACATTTGTCACGAAGCGCAGAAGCTGCCGATACTCCGCAAGCTCTTCGAGCAGTCGGCTCCGAAGCGTACCATTATTTTCGCCTCGGCCAAGCTCAAAGTGCGTGAGCTGACTTCCACTCTCCGCAAGATGGGTTTCAATGTGGCCGATATGCACTCCGATCTGGAGCAGTCCCAGCGCGAACAGGTGATGCGCGACTTCAAAAACGGCTATGTGGATGTACTTGTGGCCACTGACATCGTAGCGCGAGGGATCGACATCGACAACATACGCGTAGTCATCAACTACGACATTCCCCACGATCCCGAGGACTATGTACACCGTATCGGGCGTACTGCCCGAGGAACAAACGGGGAGGGTCTGGCTATCACTTTCGTCTCCGAGGAAGAGCAGAGCGACTTCCACAAGATCGAGACGTTTCTGGGCAAATCGGTCTATAAATTGCCTGTCGATCTGGAGTTTGGTGAAGTCCCGGCTTACGAACCGGCGAAACGTCGCCCTCGCCGTTTGGGGCGAAGCGGCGAAGCGCGTTCTGGTCGATCCGAAACGAACAAAAGACAGGGAAAAACCGCTTCGAACGGACGCAGGCGCGGAGGCACGAGACAGAGGCGA","6.40","-2.42","47501","MRFDELNLGDEVLDGLDAMNFIETTPVQAATIPPILEGRDVIACAQTGTGKTAAYLLPILDRLSAGEFASDVVNAVIMAPTRELAQQIDQQVEGFSYFMPVSAVAIYGGTDGVAWEQQRRGMAMGADIVIATPGRLISHLNLGSADLSHVSYFVLDEADRMLDMGFFDDIMQIYKQLPSSCQTVMFSATMPPKIRKLAASILRDPIEVEIAISRPPESIMQSAYICHEAQKLPILRKLFEQSAPKRTIIFASAKLKVRELTSTLRKMGFNVADMHSDLEQSQREQVMRDFKNGYVDVLVATDIVARGIDIDNIRVVINYDIPHDPEDYVHRIGRTARGTNGEGLAITFVSEEEQSDFHKIETFLGKSVYKLPVDLEFGEVPAYEPAKRRPRRLGRSGEARSGRSETNKRQGKTASNGRRRGGTRQRR","2208024 2206744","TIGR ID: PG2099","DEAD box-related helicase (ATP-dependent RNA helicase)","Cytoplasm","Numerous significant hits in gapped BLAST to ATP-dependent helicases; e.g. residues 1-368 are 43% similar to dbj|BAB06103.1| ATP-dependent RNA helicase of Bacillus halodurans, residues 1-361 are 41% similar to gb|AAD20136.1| autoaggregation-mediating protein of Lactobacillus reuteri, residues 3-416 are 38% similar to gb|AAF41783.1| ATP-dependent RNA helicase, putative of Neisseria meningitidis MC58.This sequence is similar to BT0831.","
InterPro
IPR000629
Domain
ATP-dependent helicase, DEAD-box
PS00039\"[154-162]TDEAD_ATP_HELICASE
InterPro
IPR001650
Domain
Helicase, C-terminal
PF00271\"[263-339]THelicase_C
SM00490\"[258-339]THELICc
PS51194\"[230-379]THELICASE_CTER
InterPro
IPR011545
Domain
DEAD/DEAH box helicase, N-terminal
PF00270\"[25-197]TDEAD
InterPro
IPR014001
Domain
DEAD-like helicases, N-terminal
SM00487\"[20-222]TDEXDc
InterPro
IPR014014
Domain
DEAD-box RNA helicase Q motif
PS51195\"[1-29]TQ_MOTIF
InterPro
IPR014021
Domain
Helicase superfamily 1 and 2 ATP-binding
PS51192\"[32-208]THELICASE_ATP_BIND_1
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[1-210]T\"[216-380]TG3DSA:3.40.50.300
PTHR10967\"[1-427]TPTHR10967
PTHR10967:SF51\"[1-427]TPTHR10967:SF51


","BeTs to 13 clades of COG0513COG name: Superfamily II DNA and RNA helicasesFunctional Class: L,K,JThe phylogenetic pattern of COG0513 is amTkYq-CEBRHujGPol--xNumber of proteins in this genome belonging to this COG is 2","***** IPB000629 (ATP-dependent helicase, DEAD-box subfamily) with a combined E-value of 9.2e-96. IPB000629A 20-58 IPB000629B 76-88 IPB000629C 150-173 IPB000629D 182-210 IPB000629E 297-347","Residues 3-101 are 46% similar to a (HELICASE ATP-BINDING RNA-BINDING PROTEIN RNA) protein domain (PD000085) which is seen in RRP3_YEAST.Residues 106-210 are 51% similar to a (HELICASE ATP-BINDING RNA-BINDING RNA PROTEIN) protein domain (PD000276) which is seen in DBP2_YEAST.Residues 228-355 are 42% similar to a (HELICASE PROTEIN POLYPROTEIN ATP-BINDING RNA RNA-BINDING) protein domain (PD000033) which is seen in P96614_BACSU.Residues 208-330 are 31% similar to a (PROTEIN ORF PUTATIVE KINASE) protein domain (PD000146) which is seen in O97290_PLAFA.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Fri May 18 13:35:49 MDT 2001","Wed Dec 3 09:29:46 2003","Wed Jan 31 11:11:38 MST 2001","Fri May 18 13:35:49 MDT 2001","Fri May 18 13:35:49 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 3-391 are 35% similar to PG0074, a helicase-related sequence; residues 28-393 are 22% similar to PG0381 and residues 6-353 are 24% similar to PG1597.","Fri Feb 2 09:44:28 MST 2001","Fri May 18 13:35:49 MDT 2001","-57% similar to PDB:1FUU YEAST INITIATION FACTOR 4A (E_value = 1.8E_63);-57% similar to PDB:2DB3 Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa (E_value = 2.6E_62);-58% similar to PDB:1HV8 CRYSTAL STRUCTURE OF A DEAD BOX PROTEIN FROM THE HYPERTHERMOPHILE METHANOCOCCUS JANNASCHII (E_value = 3.8E_61);-54% similar to PDB:2I4I Crystal Structure of human DEAD-box RNA helicase DDX3X (E_value = 1.2E_59);-56% similar to PDB:2HXY Crystal structure of human apo-eIF4AIII (E_value = 1.8E_58);","","","Residues 14 to 222 (E-value = 6.8e-80) place PG1835 in the DEAD family which is described as DEAD/DEAH box helicase (PF00270)Residues 263 to 339 (E-value = 2.2e-33) place PG1835 in the Helicase_C family which is described as Helicase conserved C-terminal domain (PF00271)","Wed Dec 3 09:29:46 2003","34541680","","","","","","1","","","PG2099" "PG1835.1","2208041","2208448","408","TTGGTTCCGGACAAAAGTACGTCAATTCCTACAGATACATCCCTTGGCTCATATATACCGATGCATCAGCCTCGCTTCGGTGATCCGATCTCCGGCCAACCTCGAGCCAAAAATCTGCCGATTGCGGTCTGTGTTTTCCGAGAAAACGGAACGAGATTTTTTTCGTCGTGGTGCGTAAATTTTTCACTTCCCACGCCAAAACGAAACAGTTTACGCACCACGTTTTTAGAGGTCACAAACACGAAAATTTTGGAGCGCAAACCGACCTTGAGCTATCCCCGACGCCGGAACATCCTGAATGTCGAGCCGGTGCGTTTTGCCACCATTCAAGCCGATAGAAAAAAAGAAAGATCCACAAGAGGGTTTGTCAGGACGACTCTCCCTCTCATGGATCCGGTCACAGTTTAT","","","15537","LVPDKSTSIPTDTSLGSYIPMHQPRFGDPISGQPRAKNLPIAVCVFRENGTRFFSSWCVNFSLPTPKRNSLRTTFLEVTNTKILERKPTLSYPRRRNILNVEPVRFATIQADRKKERSTRGFVRTTLPLMDPVTVY","","NO TIGR ID corresponds to this gene.","hypothetical protein","Periplasm, Cytoplasm","No significant hits in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Wed Jan 31 11:13:52 MST 2001","","","","Wed Jan 31 11:13:52 MST 2001","","","","Wed Jan 31 11:13:52 MST 2001","Wed Jan 31 11:13:52 MST 2001","Wed Jan 31 11:13:52 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","PG1835.1 is weakly similar to PG0608.1, a hypothetical protein. Residues 45-90 are 59% similar to PG0608.1.","Tue Jun 5 14:14:22 MDT 2001","Tue Jun 5 14:14:22 MDT 2001","-67% similar to PDB:1BVU GLUTAMATE DEHYDROGENASE FROM THERMOCOCCUS LITORALIS (E_value = );-68% similar to PDB:1GTM STRUCTURE OF GLUTAMATE DEHYDROGENASE (E_value = );-55% similar to PDB:1JXZ Structure of the H90Q mutant of 4-Chlorobenzoyl-Coenzyme A Dehalogenase complexed with 4-hydroxybenzoyl-Coenzyme A (product) (E_value = );-55% similar to PDB:1NZY 4-CHLOROBENZOYL COENZYME A DEHALOGENASE FROM PSEUDOMONAS SP. STRAIN CBS-3 (E_value = );","","","No significant hits to the Pfam 11.0 database","Tue Jun 5 14:14:22 MDT 2001","","","","","","","1","","","" "PG1836","2210284","2208623","1662","ATGCCAAGAATTATGAAATTAAAAATTGCACTCAGACTGCTGCTGGCGACTTTTGCCATAGTTTTATTTAGCCCTCTGGCCAAGGCCCAGATGGATATTGGTGGAGACGATGTATTGATCGAGACGATGTCCACCCTATCAGGATATTCAGAGGATTTTTATTACAAGATGGCTGTGGCAGACAATGGATGGATCTATGTGATGTTGGATTTCTCTCGTATTTATTTTGATGATGTCAGGCTGTATCGTTCCAAAGACGGTGGTGCTACTTACCAAAAGTTAGGGTCTTTGGGGTCTTTGGTGCCTTATGACTTCGATGTCTCGCATTGCGATTTTATTGTAACGGGAAAGGATGAAGATGATATCAATGTTTGGACAGTCATGACAGCATTCGAATATGTAGGTGGTACTATTGGCAATGGCGTTTTGCTGATGCATCGCCATGATGCAGATATCAATAATACAGAGTGTGTGTACAAGAAGGATTTCCCTAATAATAGACTGATGGGTGTAGCCATCGCCTCCAACTACCGTGCGCCCTCTCCTTACGGTTTGGGGGGCGATCCTTTTGCTCTCGCTGTCGCCGTTAGTGGCTCCGGAAGCGATCACAGCTTCTTGGACTATATTTTTTCGTTAGATGGTGGAGTACACTTTGAGCAAAAGCGTATTTACACAAGACCCCAAAAACTGACTATCAATAGAGTAGACCTTTCATTAGGCAGTACATCTCCTTCTCTTGGATTTAATACTTGGCCACTAATGGGAGTCGTATTCGAAATGAATAAGAACCTTGATGGCTTCGACATTGGTTTCATTTCCAACTTTGTGGACTATGATCCCCGCTATGCGTGGTCTGAACCGATAATAATAGAAGAAGACTGTGGATGGACTGATTTTAATCCTTTGGGAGCACTAAGTATAGAGATCCAAATGATGTTGGATGACAATTCGGATAATACCGTGGGTGGAGAACGCTCCCATAACTTCCTGATCACTTACCCGGGCCATTACGTATATCCGAAGCAATCTTTCAATTATTCTCCCGGACATACACCGACAAAGAAAGATCTGGTCTTTAAACACTGTATAGGTATTCCGGCTTTGGCATACGATAAGGAAGGCGATCGTTATCTGACTACTTTTCAAGATCACAATCTAATGAGATACAGATGGATCAAATACGATGACATTAACTCTTTTTATGGTTGGAGTTGGCCATATGTATATGCAAAAGAAGCTAAAGATAAAAAGAGGCGCCGTCCGCAAGTAGCACTCAATCCTACCAATGGAAAGGCTTGTTGGGTATGGCATACTCGCAAGAGCCCATATGATGAAACCAAACCACATCCTACTCCTGTAATTATTAAACATTTCCTATGGTCCGATACGGAGTGGGTACATGCTCTGGACGTGGGGGACGTATTGCAGAAGGAGGGTAGCATGAAGCTCTACCCCAATCCTGCCAAAGAATATGTTCTGATCAACCTACCCAAAGAAGGGGGGCACGAGGCAGTCGTATACGACATGCAGGGCCGAATCGTGGAGAAAGTTTCATTTTCAGGGAAAGAATATAAGCTGAATGTGCAGTATCTGTCCAAAGGTACGTACATGCTGAAAGTTGTAGCGGATACGGAGTATTTCGTGGAAAAAATCATTGTAGAG","5.90","-9.59","63126","MPRIMKLKIALRLLLATFAIVLFSPLAKAQMDIGGDDVLIETMSTLSGYSEDFYYKMAVADNGWIYVMLDFSRIYFDDVRLYRSKDGGATYQKLGSLGSLVPYDFDVSHCDFIVTGKDEDDINVWTVMTAFEYVGGTIGNGVLLMHRHDADINNTECVYKKDFPNNRLMGVAIASNYRAPSPYGLGGDPFALAVAVSGSGSDHSFLDYIFSLDGGVHFEQKRIYTRPQKLTINRVDLSLGSTSPSLGFNTWPLMGVVFEMNKNLDGFDIGFISNFVDYDPRYAWSEPIIIEEDCGWTDFNPLGALSIEIQMMLDDNSDNTVGGERSHNFLITYPGHYVYPKQSFNYSPGHTPTKKDLVFKHCIGIPALAYDKEGDRYLTTFQDHNLMRYRWIKYDDINSFYGWSWPYVYAKEAKDKKRRRPQVALNPTNGKACWVWHTRKSPYDETKPHPTPVIIKHFLWSDTEWVHALDVGDVLQKEGSMKLYPNPAKEYVLINLPKEGGHEAVVYDMQGRIVEKVSFSGKEYKLNVQYLSKGTYMLKVVADTEYFVEKIIVE","2210283 2208622","Reactive with sera from human periodontitis patients, sera from protected rats and sera from rabbits immunized with sarkosyl insoluble protein; C-terminal similar to P.gingivalis cysteine proteases.TIGR ID: PG2100","immunoreactive antigen","Periplasm, Cytoplasm","PG1836 is essentially identical (99%) to a previously sequence protein of P.gingivalis in Genbank AAD38978, and 45% similar to P.gingivalis in Genbank AAD51076.No significant hits in gapped BLAST.","
noIPR
unintegrated
unintegrated
SSF110296\"[48-220]TSSF110296


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Wed Jan 31 11:23:15 MST 2001","Wed Jan 31 11:23:15 MST 2001","Wed Jan 31 11:23:15 MST 2001","Wed Jan 31 11:23:15 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","PG1836 is similar to PG1838 and PG1572, both immunoreactive antigens.","Tue Jun 5 14:17:18 MDT 2001","Fri May 18 13:37:42 MDT 2001","-54% similar to PDB:2CN2 CRYSTAL STRUCTURES OF CLOSTRIDIUM THERMOCELLUM XYLOGLUCANASE (E_value = );-54% similar to PDB:2CN3 CRYSTAL STRUCTURES OF CLOSTRIDIUM THERMOCELLUM XYLOGLUCANASE (E_value = );","","","No significant hits to the Pfam 11.0 database","Fri May 18 13:41:40 MDT 2001","34541681","","","","","","1","","","PG2100" "PG1837","2211366","2210374","993","TTGTCTCTAAAAAGCAACGCTATGAAATACAGAAGCATTATCCTCTCCTTCTTTTTACTGATGCCGGTCTCAAATTGCTTTGCGGACATGCAGGGATATTGTATGCCCCAAAGTTGGGTCGGAAAAATAGGACAGAAAGCTAAGGAGAAAGTGGAAAAGCGAGTGGAGGAGAAAGTGGACAAAGCCATGGACAAGACCTTGGACAAGGCAGAAGAGGAAGCCACCCGAGGACAAAAGAGAGCGACCACTGCTCCTGCTCCAAAGACCGCTCGAAAGACGATCTCTCTGCAAGAACTGGAACAAGAGACCGATCGGAAAACGCACCACATCGGCAATACGGGCAAGTCCGTTGGCAGGGCTACGGGCAAGAACGGATGTGAGATCCTGTTCCCGGTGAAGCAGGGTACTCGCCGCGAAATGACTATCTATGAAGCCAACGGCAAAGTAAGCGGCACGATCCGGCAGCAGGTACAGAGCGTAACGAATACGGCCAAAGGAATGAAAATAACCACAGCCCAAGAGATGTATGACAAGAAAGGAAAACAGATCTTTTCGAGTGTGGCGAACATGTGGTGCGACGGCGACCGATTCTATGTCGATGCCCAATCGTTGCTCAACGAGCAAACGCTTAAGATGTTCAAAGACATCAAGTACAAAGTGACGGGCGTGGACATCGCCTATCCGTCCCGAATGTCGGCGGGTCAGTCCCTGCCCGATGCAGAAGTGACGATTACGGCCGAAGCGGCCGATTTCCCGTTGCCCCCGATTACTCTGCGAACCATCGGACGCAAGGTGCAGGGCATCGAGAGGATTACCACTCCGGCCGGGACTTTCGAATGCTACAAGATCAGCTATTCGATCGTCATGGAAAGTATGATTACGGTACAGATGAGTGCCGTGGAATGGATGTCCAAGGATGTCGGATGCGTCAAGAGTGAGAGCTACGACAAGAAGGGCAAGCTCGTAGGCAGTACGCTGCTCACGAAGCTGGAG","10.00","13.21","36828","LSLKSNAMKYRSIILSFFLLMPVSNCFADMQGYCMPQSWVGKIGQKAKEKVEKRVEEKVDKAMDKTLDKAEEEATRGQKRATTAPAPKTARKTISLQELEQETDRKTHHIGNTGKSVGRATGKNGCEILFPVKQGTRREMTIYEANGKVSGTIRQQVQSVTNTAKGMKITTAQEMYDKKGKQIFSSVANMWCDGDRFYVDAQSLLNEQTLKMFKDIKYKVTGVDIAYPSRMSAGQSLPDAEVTITAEAADFPLPPITLRTIGRKVQGIERITTPAGTFECYKISYSIVMESMITVQMSAVEWMSKDVGCVKSESYDKKGKLVGSTLLTKLE","2211365 2210373","TIGR ID: PG2101","conserved hypothetical protein","Periplasm","No significant hits in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-28]?signal-peptide
tmhmm\"[10-28]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Fri Sep 10 17:13:27 2004","Wed Jan 31 11:35:59 MST 2001","Wed Jan 31 11:35:59 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Sep 10 17:13:27 2004","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541682","","","","","","1","","","PG2101" "PG1838","2213139","2211520","1620","ATGAAGACAAAAGTTTTACGCAAATTCGTGGTGGCGGCTTTCGCCGTCGCAACCCTCTGTCCTCTCGCCCAAGCGCAGACGATGGGAGGAGATGATGTCAAGGTGGTCCAGTACAATCAGGAAAAACTGGTACAAACGAGGATGAGTGTGGCGGACAACGGATGGATCTATGTAATGACCCACAGTGGATACGACACCGGCAATAGCAATGTGAAGATCTTCCGCTCCAAAGACCAAGGTGCCACATACCAAAAGTTGAGGGATTGGGATCCATCGGATGATTATCAGTTTCAAGACTTCGATATCGTGGTAACGGGTAAGAATGAATCCGACATCAAGATTTGGTCGGTAGAGCTCATGAATAAGCCCGGAGGATATAAGAGTAGAGTTGCGGTCTTCAGTCGCGATGCCAACGCGCAGAATGCGAAACTCGTGTATAAGGAAGACTTCTCCAATGTGCAGTTGTACGATGTGGATATAGCCTCCAACTATCGTTCGCCTTCTTCTCTTAACAATGGTGGCAACCCTTTTGCTTTGGCTTTCGCTTACACCGGCTTCAACAATACGCACAAAATAAGTTTTGTGGACTATGTGTTCTCTCTGAATGGAGGGCAAAATTTCAATAAAAACTTACTCTTCAGTCAAGATGGAGAGAAGAAAATTGACAAGGTGGATCTCTCATTGGGTAGCACCTCTGAATCCATGGGTCACAATGCCTGGCCGCTAATGGGTGTGGTATTCGAAATGAATAAACAAGGGGGAAAAAGCGATATCGGTTTCTTGTCGAACTTTGTCGACAATGATCCCGAATTTCAGTGGTCAGGCCCTATAAAAGTGAGTGAAAGCGACATGTCGTTCAGCCCCAAAATCCAAATGTTGCTGGACGAGGATAACAATACGATCAATGGGGAGAGTTGCCACAACTTCATGATTACGTACAGCGATTATGATTCTGAATATTCGGATTGGGACATTCGGTATGTATATCCCAAGAAATCGTTCAAGTATGAAAAAGGAAAAACTCCGACTATGGATGATCTGGTGGAAGCTTTCCTTACAGCTTCGTACCAGAGTGAGACCAACTCGGGGCTGGGGTATGACAAGAACGCCAATCACTACCTGATTACATATGCCAAAAAAGAAGAGAACGGTACGAACACGCTGAAATACCGCTGGGCCAATTATGACAAGATTCATAACAAAGATTTGTGGAGCGACACATTTACGTATACATCATCTGCCAATGCTCTCTACACACCTCAAGTAGACATCAATCCGACCAAGGGTCTCGTGTGCTGGTCATGGGTGGAATATCTGCCGGGCAAACGGATCGTTTGGTCTGATACGCAGTGGACCCATGCCAACGGTGTAGAAGACATCGTAATGCAAGAAGGCAGCATGAAGCTCTACCCGAATCCGGCTCAAGAATATGCTGTGATTAGCCTGCCGACGGCAGCAAACTGCAAGGCTGTTGTTTACGATATGCAGGGCAGAGTAGTCGCTGAGGCTTCTTTCTCCGGCAACGAATACAGGCTGAACGTGCAGCACTTGGCTAAGGGTACGTACATACTCAAGGTCGTATCCGATACGGAGCGTTTCGTAGAGAAGCTCATCGTGGAA","5.20","-10.23","61119","MKTKVLRKFVVAAFAVATLCPLAQAQTMGGDDVKVVQYNQEKLVQTRMSVADNGWIYVMTHSGYDTGNSNVKIFRSKDQGATYQKLRDWDPSDDYQFQDFDIVVTGKNESDIKIWSVELMNKPGGYKSRVAVFSRDANAQNAKLVYKEDFSNVQLYDVDIASNYRSPSSLNNGGNPFALAFAYTGFNNTHKISFVDYVFSLNGGQNFNKNLLFSQDGEKKIDKVDLSLGSTSESMGHNAWPLMGVVFEMNKQGGKSDIGFLSNFVDNDPEFQWSGPIKVSESDMSFSPKIQMLLDEDNNTINGESCHNFMITYSDYDSEYSDWDIRYVYPKKSFKYEKGKTPTMDDLVEAFLTASYQSETNSGLGYDKNANHYLITYAKKEENGTNTLKYRWANYDKIHNKDLWSDTFTYTSSANALYTPQVDINPTKGLVCWSWVEYLPGKRIVWSDTQWTHANGVEDIVMQEGSMKLYPNPAQEYAVISLPTAANCKAVVYDMQGRVVAEASFSGNEYRLNVQHLAKGTYILKVVSDTERFVEKLIVE","2213165 2211519","Ross, et al.(2001) select PG1838 as one of fifteen vaccine candidate antigens, based on in vitro and in vivo laboratory studies of 120 candidates screened by bioinformatics techniques from the whole W50 genome. Reactive with sera from human periodontitis patients, sera from protected rats and sera from rabbits immunized with sarkosyl insoluble protein; C-terminal similar to P.gingivalis cysteine proteases.Veith et al. 2002 identified this protein by two-dimensional gel electrophoresis and peptide mass fingerprinting of outer membranes prepared from strain W50. They present the following results: This protein together with PG1570, PG0461, and the C-terminal domain of PG1768 migrate as vertical streaks on 2D-PAGE at a MW 13-42 kDa higher than that calculated from their gene sequences. The electrophoretic behaviour of these proteins together with their immunoreactivity with a monoclonal antibody that recognises LPS is consistent with a modification that could anchor the proteins to the outer membrane. The proposed LPS-attachment site is in the conserved C-terminal 50 amino acid residues of each of these proteins. Based on signal peptide sequence comparisons to PG0626, PG0627, PG1592, PG1840, PG0836, PG0023, PG1893, the mature N-terminus of this protein is predicted to be pyroglutamate.TIGR ID: PG2102","LPS-modified surface protein P59","Extracellular, Outer membrane","PG1836 is essentially identical (100%) to a previously sequence protein of P.gingivalis in Genbank AAD51076, and 45% similar to P.gingivalis in Genbank AAD38978.No significant hits in gapped BLAST.","
noIPR
unintegrated
unintegrated
SSF110296\"[33-115]TSSF110296


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 13:04:09 MDT 2001","","Thu Jun 14 13:04:09 MDT 2001","Thu Jun 14 13:04:09 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:04:09 MDT 2001","Thu Jun 14 13:04:09 MDT 2001","","Thu Feb 7 17:59:55 2002","Mon Feb 11 12:22:38 2002","Mon Jun 25 09:13:03 MDT 2001","Wed Jan 31 11:44:33 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","PG1838 is similar to PG1836, immunoreactive antigen and weakly similar to PG1251, thiol protease (PrtT related), PG1572, immunoreactive 46 kDa antigen PG99, and PG1356, protease/hemagglutinin PrtT. Residues 1-540 are 45% similar to PG1836.","Mon Jun 25 09:13:03 MDT 2001","Fri May 18 13:42:46 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jun 25 09:13:03 MDT 2001","34541683","","Veith,P., Talbo,G., Slakeski,N., Dashper,S., Moore,C.,Paolini,R., Reynolds,E., Major outer membrane proteins and proteolytic processing of RgpA, and Kgp of Porphyromonas gingivalis W50, Biochem J. 2002 (in press).Ross BC, Czajkowski L, Hocking D, Margetts M, Webb E, Rothel L, Patterson M, Agius C, Camuglia S, Reynolds E, Littlejohn T, Gaeta B, Ng A, Kuczek ES, Mattick JS, Gearing D, Barr IG, Identification of vaccine candidate antigens from a genomic analysis of Porphyromonas gingivalis, Vaccine 2001 Jul 20;19(30): 4135-42, PMID: 11457538.","","Thu Feb 7 16:23:17 2002","","1","","","PG2102" "PG1838.1","2213277","2213750","474","TTGTTTTTACTTTTTACTGATTGTATTATCGTTCACCCATGGCTAAGAGTGTCCAAAATCGAAATCGGCAATTCGCACAACGCGGAATGCATGTTCGGCCTTCTCTGCCACAAAGGAACGGAGTGGCGAGGAGATATACTTGGACAAATCGCGCATTTTCTTGGACAAATCACGCATTTAGCAATAAGGAAACAACAAAAAACATCTTCGTTTTGGACAAATCGCGCACAAAAAAAGCGTAAAACACTAATAAAGAAGATATTACGAGTACAAGTGCTAAAAAGCTCTTTTCGGATGTCTTTTAGAGCGTGGAGAAGTATCCTTTTGCAAGGAAAAAGAGATCGGCCAATTCGCTATCGGATAGAGATGCGGAATGCTCGGACCAAGGAGGGCGGAAGAAACAAGAAAAGAAAAACAAAAGAGATGTCTTGCGCATGTCAAAAAAACATCTACCTTTGCACCGTCTTAATTAGG","","","18655","LFLLFTDCIIVHPWLRVSKIEIGNSHNAECMFGLLCHKGTEWRGDILGQIAHFLGQITHLAIRKQQKTSSFWTNRAQKKRKTLIKKILRVQVLKSSFRMSFRAWRSILLQGKRDRPIRYRIEMRNARTKEGGRNKKRKTKEMSCACQKNIYLCTVLIR","","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No significant hits in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-19]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Wed Jan 24 17:12:20 2001","Wed Jan 24 17:12:20 2001","Wed Jan 24 17:12:20 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","-62% similar to PDB:1HBH STRUCTURE OF DEOXYHAEMOGLOBIN OF THE ANTARCTIC FISH PAGOTHENIA BERNACCHII AND STRUCTURAL BASIS OF THE ROOT EFFECT (E_value = );-62% similar to PDB:1PBX HAEMOGLOBIN OF THE ANTARCTIC FISH PAGOTHENIA BERNACCHII: AMINO ACID SEQUENCE, OXYGEN EQUILIBRIA AND CRYSTAL STRUCTURE OF ITS CARBONMONOXY DERIVATIVE (E_value = );-62% similar to PDB:1S5X The crystal structure of Trematomus bernacchii hemoglobin oxidized by air (E_value = );-62% similar to PDB:1S5Y The crystal structure of Trematomus bernacchii hemoglobin oxidized by ferricyanide (E_value = );-62% similar to PDB:2H8D Crystal structure of deoxy hemoglobin from Trematomus bernacchii at pH 8.4 (E_value = );","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG1839","2214142","2214639","498","ATGAAACTTACAGCCATGATGCTGGCCCTTTTGTCGGCACTGGCATTCTCGTCTTGCAAGAAAGACGAACCGACAACGCTGGAGAAGACCCAATGGGAAAGAATGCTGACCGGCACAGAAATCAATAAAATCATCGCATTGATGGATGGAGAGATCGACGCGGACTCTCAACTACCGGAATCGGCAAAACTAAAATTGGAACTTGACTTTTTCTCGCAGACGGATGCGAACCTGAACGTAGATATTATGATTACTCCGGGCATCACGATCAAAATGAAGATGAAGATGCCCTATATGTATAACGCCTCCACTAAGAGTGTTCTGCTCCGTCTGTCCAAGAGCCAAGTCCTTTCCGTTGAGCCGATGTTCCCGGCTTTTGAAGGCATCGATTTGTCTGAAGCGGAAGATGTTACAGGTGTGGTCGACTGGAAAAACAAGACTATGAAGCTCACGATGCAGGGAGAGAATCATCCTGTACACATCGAACTGACACAGAAA","4.90","-4.57","18619","MKLTAMMLALLSALAFSSCKKDEPTTLEKTQWERMLTGTEINKIIALMDGEIDADSQLPESAKLKLELDFFSQTDANLNVDIMITPGITIKMKMKMPYMYNASTKSVLLRLSKSQVLSVEPMFPAFEGIDLSEAEDVTGVVDWKNKTMKLTMQGENHPVHIELTQK","2213967 2214638","TIGR ID: PG2105","possible lipoprotein","Periplasm, Cytoplasm","This sequence corresponds to gi:34398004 in Genbank.","
noIPR
unintegrated
unintegrated
PS51257\"[1-19]TPROKAR_LIPOPROTEIN


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 13:04:18 MDT 2001","","Thu Jun 14 13:04:18 MDT 2001","Thu Jun 14 13:04:18 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:04:18 MDT 2001","Thu Jun 14 13:04:18 MDT 2001","","","Wed Mar 9 15:45:05 2005","Wed Mar 9 15:45:05 2005","Wed Jan 24 17:14:17 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Jun 14 13:04:18 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jun 25 09:07:52 MDT 2001","34541686","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Wed Mar 9 15:45:05 2005","","1","","19","PG2105" "PG1840","2214837","2215517","681","ATGAAAATGAAGAAAATGATCTTGATCGCCACTATGATTTTGGCGGCTGTCGGTGCCCTTTCGGCACAGGGGAGAATCGCCTTCAGGGCGGATGCTGCTGTCGGTTTCAGTACAGGCGACTATAAGGTGGAAAGTATCGGTGACCTTACCGGTAAGTCCATCGTGGGCTATCGTATCTCCGGAGGTCTGGATATACCCATAGGTTATGGTCTTTATGTTAATCCTAGTTTAGCATTCCATTCCAAAGGGATGAAAACGAATCTTGAGGGAGTTGCTTTAGGAGCTTTGGGCCTAAACTCTTCTCTAAAGGTGAAGACACACTACATTGAGATACCGGTTCATCTGGGTTATCGTCTGAGTCTGCTCAACTTGGTATCTGTTGCTGTACAGGCAGGGCCCTATTTCTCCTATGCTATCAAGGGTGACGGTACTGTTGTCAGAAAGGATGGTCAAGAGACGACCTTCGATATTTATAAAGATGGCTTGAAAGAGATGATCAACGCTAAACGTTTCGATGTCGGTCTCGGTGCTGCTGCCATGGTCGGTTACTCAAACTTCTATCTGCTCATCGGTGCAGACTTCGGTTTGATCAACACCGTAAAAGACATTAAACCCGAGACTAAAAACTTGGAGGCTACGCTGAAGAATACCTCTTTCCACGTAGGCTTAGGTATTCGCTTG","10.30","7.95","24244","MKMKKMILIATMILAAVGALSAQGRIAFRADAAVGFSTGDYKVESIGDLTGKSIVGYRISGGLDIPIGYGLYVNPSLAFHSKGMKTNLEGVALGALGLNSSLKVKTHYIEIPVHLGYRLSLLNLVSVAVQAGPYFSYAIKGDGTVVRKDGQETTFDIYKDGLKEMINAKRFDVGLGAAAMVGYSNFYLLIGADFGLINTVKDIKPETKNLEATLKNTSFHVGLGIRL","2214836 2215516","Veith et al. (2002) identified this protein by two-dimensional gel electrophoresis and peptide mass fingerprinting of outer membranes prepared from strain W50. They present the following results: This protein is strongly predicted by PSORT to be located in the outer membrane. The presence of few Cys residues support this conclusion. The peptide mass data indicate that the mature N-terminus of this protein is pyroglutamate.TIGR ID: PG2106","probable integral outer membrane protein P22","Outer membrane, Inner membrane, Cytoplasm","No significant hits in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-22]?signal-peptide
tmhmm\"[171-191]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Thu Feb 7 17:14:54 2002","Mon Feb 11 12:24:01 2002","Mon Jan 29 10:14:25 2001","Mon Jan 29 10:14:25 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","PG1840 is 36% similar to PG1592 and 26% similar to PG1782, both hypothetical proteins.","Tue Mar 27 11:15:50 MST 2001","Tue Mar 27 11:14:08 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Mar 27 11:14:08 MST 2001","34541687","","Veith,P., Talbo,G., Slakeski,N., Dashper,S., Moore,C.,Paolini,R., Reynolds,E., Major outer membrane proteins and proteolytic processing of RgpA, and Kgp of Porphyromonas gingivalis W50, Biochem J. 2002 (in press).","","Thu Feb 7 17:14:54 2002","","1","","19","PG2106" "PG1841","2216751","2215642","1110","ATGACTTTCTATGATCACTTGCACGCCTCCCCCTATACTTGGGAGCGAGTGGGTAACCTCTTGGCCGATGCTACGGCTGCCGATGTGGAGCGTTCGTTGGCATACCGACGCCGCACCATCCAAGACTTTATCACGCTTATTTCGCCTGCAGCCATCCCTTATCTGGAGCAGATGGCCCGGCAGGCGCATGCCCTGACGGTAGAGCGATTCGGCCACACGATGCAGCTCTATATCCCCCTCTACCTGTCGAATATCTGTAGCAATGCCTGTGTATACTGCGGATTCAGTCGGTCGAACAAAATCCATCGCCGCCGACTCACTGCCGAAGAGGTGGATCGGGAAGCGGAAGCGATCCTTCGGCTCGGATACAAACACCTCCTTCTCGTGTCGGGAGAGTCCGAGAAAGCCACTCCGGCAAGCTACTATGAGAAAATGACGCGGCGACTGCGTCCACTCTTCTCCCAACTCTCGCTCGAAGTTCAGCCCCTGACCACGGAAGAATATGCCCGTCTGCATGAAGCCGGTATCGGAGCCGTCTATGTGTATCAGGAGACATACAACGAGCAGGCATACCCCACCTATCACCCTGCCGGCCGGAAGGCGGACTATCGCTACCGCTTGGAGACTCCCGACAGAATCGGCCGAGCCAATATGCAAAAGATCGGAATAGGGGCACTGCTGGGACTGGAGAATTGGCGTGTGGACTCCGTTTTCACTGCTTTGCACCTGCGGTATCTGGAACAGACGTATTGGAAGAGCAAGTTTTCCATCTCGCTGCCTCGTCTGCGTCCTGCCACGGGCGGCTGGGAGCCTAAAGATCCTATTGACGATGTCGGTATGGTACAGCTTATTACTGCCTTCCGTCTGTTGGATAAGGATGTCGAGATCAGCCTGTCCACACGGGAGAGTCGTGAGTTTCGTGACCACGTGATGCCGCTCGGTATCACCTCGGTCAGTGCCGGCAGCAAGACCGAACCCGGAGGATATGCCGAAGAGAATGCCGATCTGGAGCAATTCGCCATCAACGATGCCCGCAGTCCGGCCGAAATGGCTGCCGATCTTCGCCGACTTGGCTACGAGCCGGTTTGGAAAGACTGGGATGCTTTCATG","6.70","-1.70","42392","MTFYDHLHASPYTWERVGNLLADATAADVERSLAYRRRTIQDFITLISPAAIPYLEQMARQAHALTVERFGHTMQLYIPLYLSNICSNACVYCGFSRSNKIHRRRLTAEEVDREAEAILRLGYKHLLLVSGESEKATPASYYEKMTRRLRPLFSQLSLEVQPLTTEEYARLHEAGIGAVYVYQETYNEQAYPTYHPAGRKADYRYRLETPDRIGRANMQKIGIGALLGLENWRVDSVFTALHLRYLEQTYWKSKFSISLPRLRPATGGWEPKDPIDDVGMVQLITAFRLLDKDVEISLSTRESREFRDHVMPLGITSVSAGSKTEPGGYAEENADLEQFAINDARSPAEMAADLRRLGYEPVWKDWDAFM","2216750 2215641 [Shorter 2390 1014 99]","TIGR ID: PG2107","thiamin biosynthesis protein","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 8-366 are 52% similar to gb|AAF93244.1| thiH protein of Vibrio cholerae, residues 14-370 are 51% similar to gb|AAC76964.1| thiamin biosynthesis, thiazole moiety of Escherichia coli K12, residues 14-370 are 51% similar to gb|AAD48429.1|AF154064_1 ThiH of Salmonella typhimurium.","
InterPro
IPR006638
Domain
Elongator protein 3/MiaB/NifB
SM00729\"[76-286]TElp3
InterPro
IPR007197
Domain
Radical SAM
PF04055\"[80-241]TRadical_SAM
InterPro
IPR010722
Domain
Biotin and thiamin synthesis associated
PF06968\"[256-361]TBATS
InterPro
IPR012726
Family
Thiazole biosynthesis ThiH
TIGR02351\"[2-369]TthiH
InterPro
IPR013785
Domain
Aldolase-type TIM barrel
G3DSA:3.20.20.70\"[38-322]TAldolase_TIM
noIPR
unintegrated
unintegrated
PTHR22976\"[14-361]TPTHR22976
PTHR22976:SF2\"[14-361]TPTHR22976:SF2
SSF102114\"[35-364]TSSF102114


","BeTs to 7 clades of COG1060COG name: Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymesFunctional Class: H,RThe phylogenetic pattern of COG1060 is AMTk-QVCe-r-UJ----IN-Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 300-370 are 56% similar to a (THIH PROTEIN THIAMINE BIOSYNTHESIS) protein domain (PD137292) which is seen in THIH_ECOLI.Residues 39-299 are 52% similar to a (PROTEIN SYNTHETASE SYNTHASE IRON-SULFUR BIOTIN) protein domain (PD003026) which is seen in THIH_ECOLI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon Jan 29 11:36:51 2001","Mon Jan 29 11:36:51 2001","Mon Jan 29 11:36:51 2001","","Fri May 18 13:46:19 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri May 18 13:46:19 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 80 to 241 (E-value = 2.1e-13) place PG1841 in the Radical_SAM family which is described as Radical SAM superfamily (PF04055)Residues 256 to 361 (E-value = 4.4e-35) place PG1841 in the BATS family which is described as Biotin and Thiamin Synthesis associated domain (PF06968)","Fri May 18 13:46:19 MDT 2001","34541688","","","","","","1","","19","PG2107" "PG1843","2217543","2216767","777","ATGGAAACGTTACAAATTGCCGGCAAAACATTTGAATCGCGCCTATTCGTCGGCACAGGTAAGTTTGCTTCCTCCGACCTGATGGAGGCTGCGGTCTTGGCATCGCAATCTCGTATGGTGACCGTTGCCCTGAAACGAGTGGAAATCGGTCGCGTCGAAGAAGACGACATGATCAGTCGCATCACCCGCCATCCGGAAATCACTCTCCTGCCCAATACTTCGGGTGTCCGCTCTGCCAAAGAAGCCATTCTGGCGGCCGAGCTTGCACGGGAAGCCCTCCAAACCAACTGGCTCAAGTTGGAAGTACATCCGGATCCCCGCTATTTGCTCCCCGACCCTATCGAGACGCTTCGTGCCACGGAGGAGTTGGTTCGTCGTGGCTTTATCGTGCTCCCTTACGTTCAGGCCGATCCTGTGCTGTGCAAGCATCTGGAAGAAGCCGGCGCAGCCACGGTGATGCCACTGGGTGCTCCCATCGGCAGCAATCGCGGACTGAAGACCCGTGAAATGATCCGTATCATCATCGAACAGAGTCGTGTGCCGGTCGTCATTGATGCAGGTATCGGTGCGCCCAGCCAAGCGGCAGAAGCCATGGAGATGGGGGCTGATGCCGTTCTGGTGAATACGGCCATAGCCGTGGCGGAAGATCCCGTAAGCATGGCGACGGCTTTCCGCCTTGCCGTGGAAGCCGGCCGAATGGCTTTCGAAGCCAAGCTCGGCAGCGTCCGCTCCGAAGCCGAAGCCAGCTCGCCGTTTACCTCTTTCCTCAATCTGAAA","5.20","-5.30","27949","METLQIAGKTFESRLFVGTGKFASSDLMEAAVLASQSRMVTVALKRVEIGRVEEDDMISRITRHPEITLLPNTSGVRSAKEAILAAELAREALQTNWLKLEVHPDPRYLLPDPIETLRATEELVRRGFIVLPYVQADPVLCKHLEEAGAATVMPLGAPIGSNRGLKTREMIRIIIEQSRVPVVIDAGIGAPSQAAEAMEMGADAVLVNTAIAVAEDPVSMATAFRLAVEAGRMAFEAKLGSVRSEAEASSPFTSFLNLK","2217542 2216766 [Shorter 2390 732 99]","TIGR ID: PG2108","thiamin biosynthesis protein","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 1-256 are 60% similar to pir||D49695 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate synthesis protein ThiG of Escherichia coli, residues 4-257 are 57% similar to gb|AAF93243.1| thiG protein of Vibrio cholerae, residues 1-256 are 60% similar to gb|AAC76965.1| thiamin biosynthesis, thiazole moiety of Escherichia coli K12.","
InterPro
IPR008867
Family
Thiazole biosynthesis
PF05690\"[3-257]TThiG
InterPro
IPR013785
Domain
Aldolase-type TIM barrel
G3DSA:3.20.20.70\"[1-255]TAldolase_TIM
noIPR
unintegrated
unintegrated
SSF110399\"[3-245]TSSF110399


","BeTs to 5 clades of COG2022COG name: Uncharacterized enzyme of thiazol biosynthesisFunctional Class: FThe phylogenetic pattern of COG2022 is -----q-cebr----------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 187-228 are 83% similar to a (PROTEIN THIG THIAMINE BIOSYNTHESIS) protein domain (PD006227) which is seen in THIG_ECOLI.Residues 4-186 are 58% similar to a (PROTEIN THIG THIAMINE BIOSYNTHESIS) protein domain (PD006798) which is seen in THIG_ECOLI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon Jan 29 12:01:20 2001","Mon Jan 29 12:01:20 2001","Mon Jan 29 12:01:20 2001","","Fri May 18 13:49:40 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri May 18 13:49:40 MDT 2001","-62% similar to PDB:2HTM Crystal structure of TTHA0676 from Thermus thermophilus HB8 (E_value = 2.7E_55);-65% similar to PDB:1XM3 Crystal structure of Northeast Structural Genomics Target SR156 (E_value = 8.0E_55);-65% similar to PDB:1TYG Structure of the thiazole synthase/ThiS complex (E_value = 2.3E_54);-60% similar to PDB:1WV2 Crystal structure of thiamine biosynthesis protein from Pseudomonas Aeruginosa (E_value = 6.1E_47);","","","Residues 3 to 257 (E-value = 1.3e-155) place PG1843 in the ThiG family which is described as Thiazole biosynthesis protein ThiG (PF05690)","Fri May 18 13:49:40 MDT 2001","34541689","","","","","","1","","19","PG2108" "PG1844","2219545","2217605","1941","ATGAAACCGTGGCTGATCACTCCCGAAAGGCTTACGAGCGAGCAAATCGGCCTGCTCGACCACTTTTTCGACCGGGGCTTGGAGCGGCTGCATCTTCGTTTGCCCAGTGCCGGCGAAGAGGACTATTCGCAGGTTATCGAAGCTGTGGCAGCTTGCTATCGCCGGAGAATCGTGGTGCACGACCATCCCCGGCTCGTCGGCCGCTACGGACTGTGCGGTTTGCATCTGCCCGAACGGGTCTGGAAAGGCATGACCGATCGGCCACAGCTCCCTGATGGTTGTACGGTGTCAGCTTCGTGCCACGCGATAGAGGATATAGAGTCCTTCCCCTTTCGACTCGACTACTGTTTCTTAAGCCCCGTGTTCGACAGTCTGTGCAAGGTGGGCTATGCAGGACGATTTTCCCCCGATTCTTTGGGCGATCGTCTGCAGCGACTCCATCTGCCCGTGGTGGCACTGGGCGGCATTACGCCCGATCGTCTGCCACAGCTTCGTAGAGCAGGCTTTGCCTCGGCAGCTGCACTCGGCTATGTGTGGTTGGTCGAAGGCCGGGAACTGATGCGTTGGCAGGAATTGTGTACGCCGGCTGTTATCTGTGTCGGAGGAGTGGATCCGTCGGCCGGAGCCGGCATTACGGCAGATGTGCGGACGGCCGAAAACATGGGCGTGCGGGCTTATACCGTGGCTACGGCTATTACCTTTCAGGGGAGTGGCAGCTATCGGGGGGAGCGATGGGTGGATTCGGCGGACATCATCCGGCAGATCGAATCTTTGTCGGCCGAGATGGAGCCTGCCGTCGCCAAGATCGGCCTGATCCGCGACTCGGACACCCTCTCTCTCGTAGTGGATTGTTTGAAAAAGGTTTTCCCCTCGATTCGGATCGTATGGGATCCCGTACTCAGAGCTTCGGCCGACAGCTCCGCGGGACAAGCGGATCGTTTCAATCTTGAAGATATAACGGCTTTGTCCCGGATAGACTTCATCACGCCGAATCTTCCCGAAGCTCGCCACCTTTTGGGCTGCGAACCGGACGATGAGACCCTGTTAGACTTCTATCGAAGGAGCGGTGTCGGCCTCGTCCTCAAGGGGGGGCATGCCGGAGAATCGGTCGTAACGGATCGGATCGTTTACGACGGTCGATGCGAAGCTCTCCGACTCTTACGCGGCGGTACGGGGAAGCATGGCACGGGTTGTGCCCACAGCACCGCTTTTGCAGCTGCTTTGGCCTTGGAGCAAGAACCTTTTACGGCTGCCGGGATGGCACAGTTATATGTCAGTCGACTACGTGAGCGTGCTTCGGGGTTGCTCGCTATGCACAAAGACCTGCCGGTCGATCCGGTCGTCAGGCTGATGAGCGAAATAGATTTGCAGTTCATCACGCACCGTCAGCCCGACCTGTCCGAACTCGAAGAAGCGGAGGCCGTCTGCCGTATAGGTGTGCGCTGGGTACAGCTTCGGATGAAGGAGGCTTCGGACGAAGAGATGCTTCACACGGCTTGTGCCGTCAAGGCTGTCTGCCGTCACCACGGAGCACTTTTTGTCGTCAATGACCGTGTCGAAATAGCCCGTCAGGTGGATGCTGACGGCGTACACTTGGGCAAAGAGGATATGGCGATAGTCGAAGCGCGTCGCATCCTCGGTTCGAATAAGATCATAGGACGCACATGCAATACGATGGAGGATGTGCGCCGAGCATATGCCGAAGGAGCCGACTACGTGGGTATAGGCCCGTATCGCTATACGGAGACGAAGCAGCGTTTAGCTCCCGTCCTCGGACTCGAAGGCTACAAAGCCATCGCCGCCTGTATGCAAGCCGAAGGCATCCGACTGCCGGCCTTTGCCATCGGTGGGATAGAGGATGCAGACATTCCCCTCATTCGCGACTGTGGCATAGGAGGTATTGCCGTGAGCGGCAGCCTTATCAGGAAAATAAAAAAGAAC","6.40","-6.69","70939","MKPWLITPERLTSEQIGLLDHFFDRGLERLHLRLPSAGEEDYSQVIEAVAACYRRRIVVHDHPRLVGRYGLCGLHLPERVWKGMTDRPQLPDGCTVSASCHAIEDIESFPFRLDYCFLSPVFDSLCKVGYAGRFSPDSLGDRLQRLHLPVVALGGITPDRLPQLRRAGFASAAALGYVWLVEGRELMRWQELCTPAVICVGGVDPSAGAGITADVRTAENMGVRAYTVATAITFQGSGSYRGERWVDSADIIRQIESLSAEMEPAVAKIGLIRDSDTLSLVVDCLKKVFPSIRIVWDPVLRASADSSAGQADRFNLEDITALSRIDFITPNLPEARHLLGCEPDDETLLDFYRRSGVGLVLKGGHAGESVVTDRIVYDGRCEALRLLRGGTGKHGTGCAHSTAFAAALALEQEPFTAAGMAQLYVSRLRERASGLLAMHKDLPVDPVVRLMSEIDLQFITHRQPDLSELEEAEAVCRIGVRWVQLRMKEASDEEMLHTACAVKAVCRHHGALFVVNDRVEIARQVDADGVHLGKEDMAIVEARRILGSNKIIGRTCNTMEDVRRAYAEGADYVGIGPYRYTETKQRLAPVLGLEGYKAIAACMQAEGIRLPAFAIGGIEDADIPLIRDCGIGGIAVSGSLIRKIKKN","2219544 2217604","This orf may contain two seperate genes 197-402 (thiD) and 449-640 (thiE) or be a multifunctional gene as seen in two plants, B. napus and A.thaliana. It also may belong belong to a thiamin biosynthesis operon.TIGR ID: PG2109","phosphomethylpyrimidine kinase/thiamine-phosphate pyrophosphorylase","Cytoplasm","Gapped BLAST shows residues 197-640 27% similar to a multifunctional protein, gb|AAC31298, in B.napus and residues 195-618 are 27% similar to gb|AAB72162, a thiamin biosynthetic enzyme in A.thaliana. Other matches are to either one of two domains, residues 200-400 or 475-600.","
InterPro
IPR003733
Domain
Thiamine monophosphate synthase
PD149806\"[96-179]T\"[493-645]TTMP_synthase
PF02581\"[87-168]T\"[456-640]TTMP-TENI
TIGR00693\"[455-644]TthiE
InterPro
IPR013749
Domain
Phosphomethylpyrimidine kinase type-1
PF08543\"[204-445]TPhos_pyr_kin
InterPro
IPR013785
Domain
Aldolase-type TIM barrel
G3DSA:3.20.20.70\"[1-179]T\"[440-642]TAldolase_TIM
noIPR
unintegrated
unintegrated
G3DSA:3.40.1190.20\"[194-435]TG3DSA:3.40.1190.20
PTHR20857\"[451-642]TPTHR20857
PTHR20857:SF15\"[451-642]TPTHR20857:SF15
SSF51391\"[1-179]T\"[438-641]TSSF51391
SSF53613\"[192-451]TSSF53613


","BeTs to 9 clades of COG0352COG name: Thiamine monophosphate synthaseFunctional Class: HThe phylogenetic pattern of COG0352 is a--kyQ-ceBrhuj-------Number of proteins in this genome belonging to this COG is 1","***** BP03501 (KINASE PROTEIN THIAMIN BIOSYNTHESIS HMP-P PHOS) with a combined E-value of 1.9e-21. BP03501A 198-236 BP03501B 243-282 BP03501C 327-340 BP03501D 390-429","Residues 502-636 are 34% similar to a (PYROPHOSPHORYLASE THIAMINE LYASE SYNTHASE TMP PROTEIN) protein domain (PD149806) which is seen in TENI_BACSU.Residues 198-302 are 29% similar to a (PROTEIN KINASE THIAMINE BIOSYNTHESIS) protein domain (PD003501) which is seen in O26711_METTH.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Fri Mar 9 18:13:47 MST 2001","Fri Mar 9 18:01:48 MST 2001","Fri Mar 9 18:13:47 MST 2001","Mon Jan 29 12:15:32 2001","Fri Mar 9 18:01:48 MST 2001","Fri Mar 9 18:01:48 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Mar 9 18:01:48 MST 2001","-55% similar to PDB:1XI3 Thiamine phosphate pyrophosphorylase from Pyrococcus furiosus Pfu-1255191-001 (E_value = 6.0E_24);-57% similar to PDB:1G4T THIAMIN PHOSPHATE SYNTHASE (E_value = 1.2E_19);-57% similar to PDB:2TPS THIAMIN PHOSPHATE SYNTHASE (E_value = 1.2E_19);-57% similar to PDB:1G4E THIAMIN PHOSPHATE SYNTHASE (E_value = 1.5E_19);-57% similar to PDB:1G4P THIAMIN PHOSPHATE SYNTHASE (E_value = 1.5E_19);","","","Residues 453 to 644 (E-value = 1.8e-40) place PG1844 in the TMP-TENI family which is described as Thiamine monophosphate synthase/TENI (PF02581)","Fri May 18 14:07:37 MDT 2001","34541690","","","Kim,Y.S., Nosaka,K., Downs,D.M., Kwak,J.M., Park,D., Chung,I.K. and Nam,H.G., A Brassica cDNA clone encoding a bifunctional hydroxymethylpyrimidine kinase/thiamin-phosphate pyrophosphorylase involved in thiamin biosynthesis, Plant Mol. Biol. 37 (6), 955-966 (1998), PubMed: 9700068.","","Fri Mar 9 18:13:47 MST 2001","1","","19","PG2109" "PG1845","2221305","2219545","1761","ATGAAAGAATTCAAAGTGACTACCGGTCCTCTGCCCGGCAGTGAGAAAATCTATGTCGAAGGAGAGCGTTTCCCCTTCTTGCGCGTACCGATGCGGCGCATCCGAATGTCCGACACCATATTGGAGAACGGCGAACGTGAGAAAAACGAAGATGTAGTCGTATACGATACCAGTGGCCCCTATACCGATACCTCCTATGAGGTGAATCTGCACCGAGGCGTACCGAAGATACGCGAGCAGTGGATAGAGGATCGGGGCGATACGGTGCGGCTCGAAGGGCTCAGCTCCGAATACGGACGGATAAGGCAGTCGGACGCTTCGCTCGAAAAGCTGCGTTACGAGCATGTGTGCACGCGTCCCCGTGCCGCCAAGGACGGCTGTGCCACGCAGCTCTACTACGCCCGTCAGGGGATCGTGACGCCGGAGATGGAGTTCGTGGCCATCCGCGAAAATCAGTTGATCGATCAGGTCAGGACGCGCTATCGCGCTGAGGAGGGTGAGCCGCTCGGAGCTGTTATTCCGCGCAAGATCACGCCCGAATTTGTACGCGACGAGATTGCCGCCGGACGGGCTATCCTTCCGGCCAATATCAATCATCCGGAAAGTGAGCCGATGATCATCGGGCGCAATTTCCTCGTCAAGATCAATGCGAACATAGGCAATTCGCCCATCAGCAGTACCATCGAGGAAGAGGTGGAAAAGGCCGTCTGGGCCATACGCTGGGGTGCCGATACGGTCATGGATCTCTCCACGGGGGATCATATCCATGAGACGCGCGAGTGGATCATCCGCAATTCGCCCGTGCCCATCGGCACTGTGCCCCTCTACCAGACGCTGGAGAAGGTGCAGGGCGATGTGACGAAGCTCAACTGGGAGATATTCCGCGATACGCTCATCGAGCAGGCCGAGCAGGGTGTGGACTACTTCACCATCCACGCCGGTCTGCGTTGGCACCACGTGCCTCTGACCTTGCGCCGCCTCACGGGGATCGTCTCCCGCGGTGGTTCCATCATCGCCAACTGGTGCACCACCCACAAGCGCGAAAGTTTCATCTACGAGCATTTCGAAGAGATCTGCCAAATCCTCGCACGCTACGACGTAGCCATATCTCTCGGCGATGGCTTGCGCCCGGGCTGCATCCACGACGCCAACGATGCTGCGCAGATAGCTGAGCTGAAGACGCTGGGCGAACTTACCGAGATCGCTTGGAAGTATAACGTGCAAACCATTATCGAAGGACCGGGACACGTGCCCATGCACAAGATCCGCGAGAATATGGAGATTCAACTCGAAGCCTGCCATGGCGCACCCTTCTACACTCTCGGCCCGTTGGTCAGCGACGTGGCGTCCGGCTACGACCATATCACATCGGCTATCGGCGCGGCACAGATCGGATGGTTCGGCACAGCCATGCTCTGCTATGTGACGCAAAAGGAGCATTTGGGTCTGCCCAACCGCGAAGATGTACGTGAAGGTGTAGTAACCTATAGACTGGCTGCTCATGCCGCCGACTTGGCCAAAGGACACCCCACGGCGTACTGGCGCGACTATATGATGAGCAAGGCGCGGTTCGAATTCCGCTGGAAGGATCAGTTCCATCTCTCGCTTGATCCAGAGAAAGCGATCCAATTCCACGATGCCACGCTGCCGGACGAAGGCCACAAAGAGGCGCATTTCTGCTCCATGTGCGGCGAACACTTCTGCTCCATGCGTGCCAATAAGAACTTCCGCAAGTTGCTAAACGAAGAGGCAGTCTCCAAA","6.20","-10.86","66772","MKEFKVTTGPLPGSEKIYVEGERFPFLRVPMRRIRMSDTILENGEREKNEDVVVYDTSGPYTDTSYEVNLHRGVPKIREQWIEDRGDTVRLEGLSSEYGRIRQSDASLEKLRYEHVCTRPRAAKDGCATQLYYARQGIVTPEMEFVAIRENQLIDQVRTRYRAEEGEPLGAVIPRKITPEFVRDEIAAGRAILPANINHPESEPMIIGRNFLVKINANIGNSPISSTIEEEVEKAVWAIRWGADTVMDLSTGDHIHETREWIIRNSPVPIGTVPLYQTLEKVQGDVTKLNWEIFRDTLIEQAEQGVDYFTIHAGLRWHHVPLTLRRLTGIVSRGGSIIANWCTTHKRESFIYEHFEEICQILARYDVAISLGDGLRPGCIHDANDAAQIAELKTLGELTEIAWKYNVQTIIEGPGHVPMHKIRENMEIQLEACHGAPFYTLGPLVSDVASGYDHITSAIGAAQIGWFGTAMLCYVTQKEHLGLPNREDVREGVVTYRLAAHAADLAKGHPTAYWRDYMMSKARFEFRWKDQFHLSLDPEKAIQFHDATLPDEGHKEAHFCSMCGEHFCSMRANKNFRKLLNEEAVSK","2221304 2219544 [Shorter 2396 1698 99]","TIGR ID: PG2110","thiamin biosynthesis protein","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 7-586 are 64% similar to gb|AAG08358.1|AE004910_5 thiamin biosynthesis protein ThiC of Pseudomonas aeruginosa, residues 10-585 are 65% similar to gb|AAF93239.1| thiamin biosynthesis protein ThiC of Vibrio cholerae, residues 12-577 are 64% similar to gb|AAB95616.1| (M88701) thiC of Escherichia coli.This sequence corresponds to BT0650.","
InterPro
IPR002817
Family
Thiamine biosynthesis protein ThiC
PD007048\"[129-576]TThiC
PF01964\"[129-577]TThiC
TIGR00190\"[128-578]TthiC


","BeTs to 9 clades of COG0422COG name: Thiamine biosynthesis protein ThiCFunctional Class: HThe phylogenetic pattern of COG0422 is amT--qvcebr----------Number of proteins in this genome belonging to this COG is 1","***** PF01964 (ThiC family) with a combined E-value of 2.5e-234. PF01964A 129-164 PF01964B 205-252 PF01964C 312-357 PF01964D 358-385 PF01964E 386-438 PF01964F 439-475 PF01964G 476-510 PF01964H 511-562","Residues 6-86 are 48% similar to a (PROTEIN THIC THIAMINE BIOSYNTHESIS PLASMID T27A16.27) protein domain (PD018221) which is seen in O34291_RHIET.Residues 87-174 are 44% similar to a (THIAMINE BIOSYNTHESIS PROTEIN THIC) protein domain (PD139783) which is seen in THIC_ECOLI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon Jan 29 13:46:36 2001","Tue Dec 2 17:35:05 2003","Mon Jan 29 13:46:36 2001","Fri May 18 13:55:28 MDT 2001","Fri May 18 13:55:28 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri May 18 13:55:28 MDT 2001","-53% similar to PDB:2HPI Eubacterial and Eukaryotic Replicative DNA Polymerases are not Homologous: X-ray Structure of DNA Polymerase III (E_value = );-53% similar to PDB:2HPM Eubacterial and Eukaryotic Replicative DNA Polymerases are not Homologous: X-ray Structure of DNA Polymerase III (E_value = );-38% similar to PDB:1TYO Isocitrate Dehydrogenase from the hyperthermophile Aeropyrum pernix in complex with etheno-NADP (E_value = );-38% similar to PDB:1V94 Crystal structure of isocitrate dehydrogenase from Aeropyrum pernix (E_value = );-38% similar to PDB:1XGV Isocitrate Dehydrogenase from the hyperthermophile Aeropyrum pernix (E_value = );","","","Residues 129 to 577 (E-value = 7.7e-303) place PG1845 in the ThiC family which is described as ThiC family (PF01964)","Fri May 18 13:55:28 MDT 2001","34541691","","","","","","1","","19","PG2110" "PG1847","2221575","2221378","198","ATGCAAGTTACTATCAACAACCAACCGATCACATGCCTCGAAGGTATGGGACTGGCTGCCCTCTTGGAAGCCGAGCGGATCCAAGTGGAGCGCACGGCCATAGCCGTAAACGGAGAAGTCGTACCCCGTGCCTCGTGGCCGGACTTCCGTCTGTCCGAAGGCGATGAGATCCTGATCATCCAAGCCACCTATGGGGGC","4.10","-5.06","7153","MQVTINNQPITCLEGMGLAALLEAERIQVERTAIAVNGEVVPRASWPDFRLSEGDEILIIQATYGG","2221628 2221377 [Shorter 2396 216 99]","TIGR ID: PG2111","thiamine biosynthesis protein","Cytoplasm","","
InterPro
IPR003749
Family
ThiamineS
PF02597\"[3-66]TThiS
InterPro
IPR010035
Family
ThiS, thiamine-biosynthesis
TIGR01683\"[3-66]TthiS
InterPro
IPR012675
Domain
Beta-grasp fold, ferredoxin-type
G3DSA:3.10.20.30\"[1-66]TFerredoxin_fold
noIPR
unintegrated
unintegrated
SSF54285\"[1-66]TSSF54285


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 13:04:44 MDT 2001","","Thu Jun 14 13:04:44 MDT 2001","Thu Jun 14 13:04:44 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:04:44 MDT 2001","Thu Jun 14 13:04:44 MDT 2001","","","Fri Jan 21 15:55:11 2005","Fri Jan 21 15:56:12 2005","Wed Jan 24 17:08:56 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Jan 21 15:55:11 2005","No significant hits to the PDB database (E-value < E-10).","","","Residues 2 to 66 (E-value = 2.6e-09) place PG1847 in the ThiS family which is described as ThiS family (PF02597)","Mon Jun 25 09:04:48 MDT 2001","34541692","","","","","","1","","19","PG2111" "PG1848","2221614","2222723","1110","GTGGTTGACCGTCCACAATGGGGTGCTTCTCCCGAAGCTGCTGGCACGCATAGTGTGTATTCGATTCTACATCCCTCCGCCGGTATTATCCGGATCAGGTCTATGGGTATTATCTCAGCCTGCCGTATCGCAATTCTTGCCGGCAAGCACCCCCGTAGCGGTCTGTCGAGGGCAAATGTAGGTATTCTTTCGTACAATCCAGAAAACACGCCCGAGAAAAAGAGAAAACTGCAAGAAAAAAATGTTTTCCTCCAAATCCGGCTCCGTCAATCATTTAATAATTTGATACCTTCGCTCCCATTTAGAATCGATAACACAAAAAAAATCACTGAAATGAAAAAAACTACTTTGACAGGATCGATATGTGCTTTACTCCTGTTTTTGGGTCTCTCGGCCAATGCCCAATCGAAGTTAAAGATCAAGAGCATTGAGGCAGCTACCACTTTCAGTTCGGCCACGGCCGGAAATGGTTTTGGTGGCAATATCTTCGGCATGGACATGAGCATACGGATGAGGGTACACCACAGCATTCTGCCCGAAGGGTTGGATTTTTCGGTAGGAATACATGAAAGAAGAGCACACTGGGAAGAGGCCGGAAGTCCGAAGCTCATGTATACGAATGTCCCAAGTATCATTGGTATTGTTGAAAAGGTAATAGTCTTCGAAGACGCAGAAGACTTTTTTGACAAAAAAGCTCTCGGCCGCTTCCTCATCAGTTTGGGGATATCCTATACCAAGCATCTGGGAGCGTATTGGGGATGGACCAATGACGCCCATATTCTTTTCTCACCGATACCCAAGAGCAAGGTCCACTATGACACCTACACAAGAGCTGGCAGTGACCTTGTACTTCAGTCCGAAGATGTTGCCACAGTGAGCAATGGCTTTTCACCGGGGATCGGACTCAAAAGTTCTATTTGGTGGAAAATGCCCATCAAGAGCAAATATGATTTTCGCCTCGGTTTCAGCCTGGGCTATGAGTATCTGAACCTGCTATATCCGTATCGTAATTTCAAGCTGGATGGAAATAAGCCGCTTTCAGCACTATCTCCTCGCATGAACCACATCGGCCATGTGGGCTTCAACTTTACCGTGGGTCTTTGGACTAAT","10.60","18.79","41121","VVDRPQWGASPEAAGTHSVYSILHPSAGIIRIRSMGIISACRIAILAGKHPRSGLSRANVGILSYNPENTPEKKRKLQEKNVFLQIRLRQSFNNLIPSLPFRIDNTKKITEMKKTTLTGSICALLLFLGLSANAQSKLKIKSIEAATTFSSATAGNGFGGNIFGMDMSIRMRVHHSILPEGLDFSVGIHERRAHWEEAGSPKLMYTNVPSIIGIVEKVIVFEDAEDFFDKKALGRFLISLGISYTKHLGAYWGWTNDAHILFSPIPKSKVHYDTYTRAGSDLVLQSEDVATVSNGFSPGIGLKSSIWWKMPIKSKYDFRLGFSLGYEYLNLLYPYRNFKLDGNKPLSALSPRMNHIGHVGFNFTVGLWTN","2221613 2222722","TIGR ID: PG2112","hypothetical protein","Outer membrane, Inner membrane, Cytoplasm","No significant hits in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon Jan 29 14:08:50 2001","Mon Jan 29 14:08:50 2001","Mon Jan 29 14:08:50 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","PG1848 is similar to PG0437, a conserved hypothetical protein. Residues 108-367 are 40% similar to PG0437.","Tue Jun 5 14:23:10 MDT 2001","Tue Jun 5 14:23:10 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Jun 5 14:23:10 MDT 2001","34541693","","","","","","1","","","PG2112" "PG1849","2222928","2223965","1038","GTGGTTGATATTAATGAATCCGAATTTGTGAAAATAAATGATTGCAGTATGAAAAACAATTTTTACAGAAGAAGCTTATTGGCAATGAGCGTTTTTTTCCTCGGCGCATGTGTCCTTTTTGGACAGAAAAACAGTGATAAGCAGGATGATCCGATCTTGCTTTATCCTCTTGGGACTACATGGTATTACCACACAAGTGAAAAAACGAGTATGGACTCGCCTTCGTATTTCGGGTATATCCGCCATCGTGTCGAGAAGAATATCCAAATAGGCGAATACCAAGCTCAAGAGATACAAGTGGTTCATAAAGATTGGACAGGTCTTGAGACCCCGATGGAGCCTTTTTACCTATATAGAAAAGGAGGTAAGGCCTATGTTGTAGAGTCTGACGGCTTGCGACTGCTCTATGATCTCACAGCAGAGGTTGGCGACGTTATACCCCTTCCCGTCAACCAAGGTACAGCCGTCGAGGGCTTTTCTCATGGGACGACAACGGTCATTGAAAAATCCACAATCAACGTCGGTGGGCGTGATTTGGTTCGACAAGTTTATCGCCTGAATTATTATTTTGCGGAAGGCCCGTGGCCGGAGCAAGGTAAGCTTGTCGAAGTAATCGAAGATTTGGGCATTTTAGAGCTCAATGCCCAATATGAAAAACCCCTTCCATATGGAATTATTGTGGACTATATCAATCCCAAACCATTGCTCCGATGCTTTTTCAGTGATGACTTCCGATACAAAGCTCCTTTCTGGGACGGACGTCCTTGCTATGCCTATGGCATTCCAAATAGTATGACCGCTTTGTCCGGTGAATCAACGCCTTTCAGTGTCAATCCGGAATACATACGCTTTGACAAAGAACATTCAGGCCTTACGTACCAAATTCTGAATGCAAATGGTCTTCAGATGCTGAGGGGTAACCTGAAAGGAGGAGAGACCGAGATCAATATCTCTACCTTACAGCGAGGCCTATACATCATACAGTGGCAAGAGTCTCATACAGGCCTGAGGCACAGTGCCGTCTTCTACAATACATTA","5.30","-7.48","39528","VVDINESEFVKINDCSMKNNFYRRSLLAMSVFFLGACVLFGQKNSDKQDDPILLYPLGTTWYYHTSEKTSMDSPSYFGYIRHRVEKNIQIGEYQAQEIQVVHKDWTGLETPMEPFYLYRKGGKAYVVESDGLRLLYDLTAEVGDVIPLPVNQGTAVEGFSHGTTTVIEKSTINVGGRDLVRQVYRLNYYFAEGPWPEQGKLVEVIEDLGILELNAQYEKPLPYGIIVDYINPKPLLRCFFSDDFRYKAPFWDGRPCYAYGIPNSMTALSGESTPFSVNPEYIRFDKEHSGLTYQILNANGLQMLRGNLKGGETEINISTLQRGLYIIQWQESHTGLRHSAVFYNTL","2222927 2223964","NO TIGR ID corresponds to this gene.","hypothetical protein","Outer membrane, Cytoplasm","No significant hits found in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-41]?signal-peptide
tmhmm\"[21-41]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon Jan 29 14:21:39 2001","Mon Jan 29 14:21:39 2001","Mon Jan 29 14:21:39 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG1849.1","2224297","2224635","339","ATGCGTGGAAATCGCGTCTCTCTCCCCACTATTGCTACTCTATGCAACTCCTCGACCGAAGTTGTAGCGTTACTCGGCACAATGCTTTTCAGTACACGTCACGCTCCAAAATTTTCCCGTTTGACACTCCTAAAAACATGGCGTGGGAACTTTTTGGTTTTGGCGCGGAAAGCAAAAAATTCTCACGCCACAACGAAAAAAATCTCGTTCCATTTTTTCAGAAAATTCGAACTAAAATCGGTGCATTTTTGGTTCGGATCGATGAGTCAGACGTGTACTGTGGTCAGAAAAATATCATCCATAAAAGATTCGGGAATTAGCAGAGAGACAGGCTATGGC","","","12741","MRGNRVSLPTIATLCNSSTEVVALLGTMLFSTRHAPKFSRLTLLKTWRGNFLVLARKAKNSHATTKKISFHFFRKFELKSVHFWFGSMSQTCTVVRKISSIKDSGISRETGYG","","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No significant hit found in gapped BLAST with E value less than e-04.","
InterPro
IPR012456
Family
Protein of unknown function DUF1661
PF07877\"[54-84]TDUF1661


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Thu Mar 8 10:35:31 MST 2001","","Thu Mar 8 10:33:20 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No significant paralogs found using local BLAST search.","Thu Mar 8 10:33:20 MST 2001","Thu Mar 8 10:33:20 MST 2001","-44% similar to PDB:1GFF THE ATOMIC STRUCTURE OF THE DEGRADED PROCAPSID PARTICLE OF THE BACTERIOPHAGE G4: INDUCED STRUCTURAL CHANGES IN THE PRESENCE OF CALCIUM IONS AND FUNCTIONAL IMPLICATIONS (E_value = );","","","No significant hits to the Pfam 11.0 database","Thu Mar 8 10:33:20 MST 2001","","","","","","","1","","","" "PG1849.2","2224338","2224613","276","ATGCAACTCCTCGACCGAAGTTGTAGCGTTACTCGGCACAATGCTTTTCAGTACACGTCACGCTCCAAAATTTTCCCGTTTGACACTCCTAAAAACATGGCGTGGGAACTTTTTGGTTTTGGCGCGGAAAGCAAAAAATTCTCACGCCACAACGAAAAAAATCTCGTTCCATTTTTTCAGAAAATTCGAACTAAAATCGGTGCATTTTTGGTTCGGATCGATGAGTCAGACGTGTACTGTGGTCAGAAAAATATCATCCATAAAAGATTCGGGAAT","10.70","8.61","10802","MQLLDRSCSVTRHNAFQYTSRSKIFPFDTPKNMAWELFGFGAESKKFSRHNEKNLVPFFQKIRTKIGAFLVRIDESDVYCGQKNIIHKRFGN","","TIGR ID: PG2115","hypothetical protein","Cytoplasm","No significant hit found.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Mon Feb 26 16:48:30 MST 2001","","","","Thu Mar 8 10:42:43 MST 2001","Mon Jun 25 09:03:11 MDT 2001","Thu Mar 8 10:40:06 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 22-86 have 58% similarity to PG1355, a trypsin-like proteinase prtT. Also weaker similarity to PG1728.1, PG1702, and PG1786.2, all hypothetical proteins.","Tue Jun 5 14:25:36 MDT 2001","Thu Mar 8 10:40:06 MST 2001","-43% similar to PDB:1AK5 INOSINE MONOPHOSPHATE DEHYDROGENASE (IMPDH) FROM TRITRICHOMONAS FOETUS (E_value = );-43% similar to PDB:1LRT CRYSTAL STRUCTURE OF TERNARY COMPLEX OF TRITRICHOMONAS FOETUS INOSINE-5'-MONOPHOSPHATE DEHYDROGENASE: STRUCTURAL CHARACTERIZATION OF NAD+ SITE IN MICROBIAL ENZYME (E_value = );-43% similar to PDB:1ME7 Inosine Monophosphate Dehydrogenase (IMPDH) From Tritrichomonas Foetus with RVP and MOA bound (E_value = );-43% similar to PDB:1ME8 Inosine Monophosphate Dehydrogenase (IMPDH) From Tritrichomonas Foetus with RVP bound (E_value = );-43% similar to PDB:1ME9 Inosine Monophosphate Dehydrogenase (IMPDH) From Tritrichomonas Foetus with IMP bound (E_value = );","","","No significant hits to the Pfam 11.0 database","Mon Jun 25 09:03:11 MDT 2001","","","","","","","1","","","PG2115" "PG1849.3","2224924","2224616","309","TTGAGGATTGATATGCCTCTCCGAGGTGTTTTTTGCCTTTTGGGCCAATTTGACGCCCGGTTTTTTCGGATTAAAAGCCATAGCCGGAAAGGCAAAGTCCATCTTCACCCACTCCGGTCCCATATGTCTGAAACGTCGATACCCCATGTTCGCCTTAAGTTGCCCAAAGATCGCCTCGGGTTCAATACATCGTCGCTTGCGGTGCACAAGACCTTACTCCGAGTTGAGCCGATCCTTAGCCTGCGCTTTGTAGTTGTTGAGACGATGATTCACTTCGATGATCCTATTAGCCATAGCCTGTCTCTCTGC","","","11862","LRIDMPLRGVFCLLGQFDARFFRIKSHSRKGKVHLHPLRSHMSETSIPHVRLKLPKDRLGFNTSSLAVHKTLLRVEPILSLRFVVVETMIHFDDPISHSLSLC","","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No hit found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","","","Fri May 18 16:26:07 MDT 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri May 18 16:26:07 MDT 2001","-67% similar to PDB:1JHF LEXA G85D MUTANT (E_value = );-67% similar to PDB:1JHH LEXA S119A MUTANT (E_value = );-67% similar to PDB:1LEA SOLUTION STRUCTURE OF THE LEXA REPRESSOR DNA BINDING DETERMINED BY 1H NMR SPECTROSCOPY (E_value = );-67% similar to PDB:1LEB SOLUTION STRUCTURE OF THE LEXA REPRESSOR DNA BINDING DETERMINED BY 1H NMR SPECTROSCOPY (E_value = );-53% similar to PDB:1X13 Crystal structure of E. coli transhydrogenase domain I (E_value = );","","","No significant hits to the Pfam 11.0 database","Fri May 18 16:26:07 MDT 2001","","","","","","","1","","","" "PG1850","2225906","2225331","576","ATGGCAACAAAAATCAGATTGCAACGACATGGTCGCAAAGGTTATGCCTTTTATAAGATCGTTGTCGCAGACAGCAGGGCGCCACGAGATGGCAAGTTTATTGAAAGGATCGGTTCATACAATCCGAACACGAATCCTGCTACAATAGATTTGAATTTCGAGCGCGCTTTGTATTGGATCGGTGTAGGCGCACAGCCTACCGACACGGCACGTAATATTTTGTCCCGTGAGGGTGTGCTCATGATGAAGCACCTCCTTGGTGGTGTTAAGAAGGGTGCTTTCGATCAAGCTGCAGCAGAAAACAAGTTCGAGGCTTGGTTGAAGGGCAAAAAAGATGCTCTTAACAACATGAAGGCAAAGGTGAAAGAAGCCGCTGTAGCGGACGATAAGGTTAAGCTCGAAGCAGAGAAGGCCGTAAACAAGGCTCGTGCAGAAGCTGTGGCAGAGAAAAAAGCCGCAGAGGCCAAAGCTAAGGCTGAAGCAGAGGCTGCTGCCGCTGCCGAAGAAGCTGCCGAAACGGAAGAAACTCCCGTGGAAGCTGCTGCCGAAGAAGCTCCTGCTGCTGAGAGCGCAGAA","8.90","1.50","20654","MATKIRLQRHGRKGYAFYKIVVADSRAPRDGKFIERIGSYNPNTNPATIDLNFERALYWIGVGAQPTDTARNILSREGVLMMKHLLGGVKKGAFDQAAAENKFEAWLKGKKDALNNMKAKVKEAAVADDKVKLEAEKAVNKARAEAVAEKKAAEAKAKAEAEAAAAAEEAAETEETPVEAAAEEAPAAESAE","2225905 2225330","TIGR ID: PG2117","30S ribosomal protein S16","Cytoplasm, Periplasm, Inner membrane","Numerous significant hits in gapped BLAST; e.g. residues 1-114 are 75% similar to >gb|AAF01482.1|AF137263_1 30S ribosomal protein S16-like protein of Bacteroides thetaiotaomicron, residues 1-84 are 55% similar to dbj|BAB06202.1| 30S ribosomal protein S16 of Bacillus halodurans, residues 1-84 are 53% similar to emb|CAB13472.1| ribosomal protein S16 (BS17) of Bacillus subtilis.","
InterPro
IPR000307
Family
Ribosomal protein S16
PD003791\"[11-79]TRibosomal_S16
G3DSA:3.30.1320.10\"[2-88]TRibosomal_S16
PTHR12919\"[2-137]TRibosomal_S16
PF00886\"[9-67]TRibosomal_S16
TIGR00002\"[3-80]TS16
SSF54565\"[2-83]TRibosomal_S16
noIPR
unintegrated
unintegrated
PTHR12919:SF4\"[2-137]TPTHR12919:SF4


","BeTs to 13 clades of COG0228COG name: Ribosomal protein S16Functional Class: JThe phylogenetic pattern of COG0228 is ----yqvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB000307 (Ribosomal protein S16) with a combined E-value of 1.9e-37. IPB000307A 9-42 IPB000307B 51-76","Residues 9-67 are 54% similar to a (PROTEIN RIBOSOMAL S16 30S CHLOROPLAST MITOCHONDRIAL S24) protein domain (PD003791) which is seen in RS16_BACSU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Apr 26 15:50:58 MDT 2001","Wed Jan 31 13:27:52 MST 2001","Wed Jan 31 13:27:52 MST 2001","Thu Feb 22 19:22:23 MST 2001","Thu Feb 22 19:22:23 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Apr 26 15:50:58 MDT 2001","-70% similar to PDB:1EMW SOLUTION STRUCTURE OF THE RIBOSOMAL PROTEIN S16 FROM THERMUS THERMOPHILUS (E_value = 1.1E_17);-70% similar to PDB:1FJG STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH THE ANTIBIOTICS STREPTOMYCIN, SPECTINOMYCIN, AND PAROMOMYCIN (E_value = 1.1E_17);-70% similar to PDB:1HNW STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH TETRACYCLINE (E_value = 1.1E_17);-70% similar to PDB:1HNX STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH PACTAMYCIN (E_value = 1.1E_17);-70% similar to PDB:1HNZ STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH HYGROMYCIN B (E_value = 1.1E_17);","","","Residues 9 to 67 (E-value = 1.8e-32) place PG1850 in the Ribosomal_S16 family which is described as Ribosomal protein S16 (PF00886)","Thu Apr 26 15:50:58 MDT 2001","34541696","","","Xu,J., Bjursell,M.K., Himrod,J., Deng,S., Carmichael,L.K.,Chiang,H.C., Hooper,L.V. and Gordon,J.I.A Genomic View of the Human-Bacteroides thetaiotaomicron SymbiosisScience 299 (5615), 2074-2076 (2003)PUBMED 12663928","","Tue Nov 18 16:16:02 2003","1","","","PG2117" "PG1851","2226245","2225967","279","GTGCTGACAAATCGGGAACCGCTACAGGATGCTTCCTGCCTGTGGTCAGATCGAACGGAAGATAAGGATCGTGCATTGGGTCGTTTCAGCCTCCGCTCGCTCACGAAAATTCCAACTGAAACTAAACATGTAGAAAGCATATTGATTCCATGTTTGGACGAGGGTTCAATTCCCTCCAGCTCCACCATCCGATCGGGTACAGACAGGCTGAGCGCTTATCTGTACCCGATCGTTTTTTGTGGTATGTGCCAAGAGAAAGCCACTTTGTTTGTTCCATTT","5.90","-0.96","10407","VLTNREPLQDASCLWSDRTEDKDRALGRFSLRSLTKIPTETKHVESILIPCLDEGSIPSSSTIRSGTDRLSAYLYPIVFCGMCQEKATLFVPF","2226244 2225966","NO TIGR ID corresponds to this gene.","hypothetical protein","Periplasm, Cytoplasm","No hits found in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Jan 31 13:39:20 MST 2001","Wed Jan 31 13:39:20 MST 2001","Wed Jan 31 13:39:20 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","-54% similar to PDB:1MT5 CRYSTAL STRUCTURE OF FATTY ACID AMIDE HYDROLASE (E_value = );","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG1851.1","2226058","2226381","324","ATGGTGGAGCTGGAGGGAATTGAACCCTCGTCCAAACATGGAATCAATATGCTTTCTACATGTTTAGTTTCAGTTGGAATTTTCGTGAGCGAGCGGAGGCTGAAACGACCCAATGCACGATCCTTATCTTCCGTTCGATCTGACCACAGGCAGGAAGCATCCTGTAGCGGTTCCCGATTTGTCAGCACCGCACCATCGAGCTACTTCGGGAAAAAGCTGCTCGGGCGATGTCTCGTCGCTGCCACTTTGGCGGCGATGAAGCGTCTAATCTACTATTCTTCGATTACGCAGCGAGAGCGTAGTTATTTTCGCCAATTAAACTTT","","","12106","MVELEGIEPSSKHGINMLSTCLVSVGIFVSERRLKRPNARSLSSVRSDHRQEASCSGSRFVSTAPSSYFGKKLLGRCLVAATLAAMKRLIYYSSITQRERSYFRQLNF","","NO TIGR ID corresponds to this gene.","hypothetical protein","Periplasm, Cytoplasm","No significant hits in gapped BLAST","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Wed Jan 31 13:40:37 MST 2001","","","","Wed Jan 31 13:40:37 MST 2001","","","","Wed Jan 31 13:40:37 MST 2001","Wed Jan 31 13:40:37 MST 2001","Wed Jan 31 13:40:37 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri May 18 16:28:22 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Fri May 18 16:28:22 MDT 2001","","","","","","","1","","","" "PG1852","2226690","2227658","969","ATGCACAACTTTGCCATCATCGGTGTGGCCGGCTATATTGCTCCGCGCCACCTTCGCGCCATCAAGGATACAGGCAACCGCTTGGTATCGGCTATGGATAAGTTCGACAGTGTGGGTATCATGGACAGTTACTTCCCGAAAGCTGCCTTCTTTACGGAGCAAGAACTGTTCGACCGTCACAACTCCAAGCTACGAGGAACCGATCAGGCTATCGACCACGTGTCCGTTTGTACACCGAACTATCTGCACGATGCTCATTGTCGCTATGGCCTGCGACTTGGAGCGGATGTGATATGCGAGAAGCCTTTGGTGCTCAATCCTTGGAATATAGACGCTTTGCAGGAGATCGAGCGAGAGACGGGGCATCGGATCTATAATATTCTTCAACTGCGACTCCATGAGTCGATCGTGGCCCTGAAGAGAAAGATCGAATCCGGATCGGCCGACAAGATCTATGATGTCACGCTTACATATATTACTTCGCGCGGCAATTGGTACTATACGAGCTGGAAGGGAGACGAGCGTAAGAGCGGTGGCATAGCTACGAACATCGGTGTTCATTTCTACGACATGCTGTCATGGATTTTCGGCAGTGTACGACACAATGTCGTACATGTGTGTGTGCATGACAGGGCTGCCGGCTATTTGGAATTGGAGCGCGCCCGTGTGCGTTACTTCCTTTCGATCAATGAGGAGCTTCTGCCCGAGAATGCCGTACAGGGAGAGAAGCGAACCTTTCGTACGATAGAAATCGACGGCGAATCATTCGAGTTCAGTGAAGGGTTTACGGAGCTGCACACCGAGAGTTATCGGCGGATTTTGGCCGGTGAAGGTTTCGGTTTGGACGAAGCTCGCAACAGCATTCAGATCGTTCATGACATTCGCAATGCTTCTCCCGTAGGACTGAAGGGCGAATACCACCCCCTTGCACGTTTGCCCCTGGCCTCTCATCCTTTCGGATGGAGACGC","7.10","0.68","36921","MHNFAIIGVAGYIAPRHLRAIKDTGNRLVSAMDKFDSVGIMDSYFPKAAFFTEQELFDRHNSKLRGTDQAIDHVSVCTPNYLHDAHCRYGLRLGADVICEKPLVLNPWNIDALQEIERETGHRIYNILQLRLHESIVALKRKIESGSADKIYDVTLTYITSRGNWYYTSWKGDERKSGGIATNIGVHFYDMLSWIFGSVRHNVVHVCVHDRAAGYLELERARVRYFLSINEELLPENAVQGEKRTFRTIEIDGESFEFSEGFTELHTESYRRILAGEGFGLDEARNSIQIVHDIRNASPVGLKGEYHPLARLPLASHPFGWRR","2226674 2227657","TIGR ID: PG2119","oxidoreductase, Gfo/Idh/MocA family","Cytoplasm","This sequence corresponds to gi:34398015 in Genbank.Its nearest neighbor in the NR database is gi:34558464 from Wolinella succinogenes DSM 1740.","
InterPro
IPR000683
Domain
Oxidoreductase, N-terminal
PF01408\"[2-128]TGFO_IDH_MocA
InterPro
IPR004104
Domain
Oxidoreductase, C-terminal
PF02894\"[140-250]TGFO_IDH_MocA_C
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.720\"[1-163]TG3DSA:3.40.50.720
PTHR22604\"[68-197]TPTHR22604
SSF51735\"[1-179]TSSF51735


","BeTs to 8 clades of COG0673COG name: Predicted dehydrogenases and related proteinsFunctional Class: RThe phylogenetic pattern of COG0673 is --tKYqVCEB--uj-------Number of proteins in this genome belonging to this COG is 2","***** PF01408 (Oxidoreductase family) with a combined E-value of 4e-11. PF01408 71-106","Residues 4-289 are 58% similar to a (PROTEIN OXIDOREDUCTASE INTERGENIC REGION NAD) protein domain (PD001155) which is seen in P72133_PSEAE.","","Thu Jun 14 13:05:32 MDT 2001","","Thu Jun 14 13:05:32 MDT 2001","Thu Jun 14 13:05:32 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:05:32 MDT 2001","Thu Jun 14 13:05:32 MDT 2001","","","Wed Mar 16 10:28:37 2005","Wed Mar 16 10:25:58 2005","Wed Jan 31 14:25:32 MST 2001","Mon Jun 25 09:01:00 MDT 2001","Mon Jun 25 09:01:00 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 16 10:25:58 2005","No significant hits to the PDB database (E-value < E-10).","","","Residues 2 to 128 (E-value = 4.2e-22) place PG1852 in the GFO_IDH_MocA family which is described as Oxidoreductase family, NAD-binding Rossmann fold (PF01408)Residues 140 to 250 (E-value = 2.6e-11) place PG1852 in the GFO_IDH_MocA_C family which is described as Oxidoreductase family, C-terminal alpha/beta domain (PF02894)","Wed Mar 16 10:25:58 2005","34541697","","","","","","1","","","PG2119" "PG1853","2228585","2227779","807","ATGATCAAATTCATGAGTATCGCCAGCGGCAGTAGTGGCAACTGCTACTATCTCTCCAATGGCAATCAGGCACTGCTTATCGATGCAGGCATTCCATTAAGAAGCATTTCCAAAGCCCTCAAAGATCATCAGCTCCCCATCGAAGGTAATGTCGTAGGTGTATTGGTCACACATGACCATGCCGACCACATTCGAACTATCGGCTGCCTGGGAGAAAAATTCCACCTGCCCGTATTTGCTACGGAAAGAGTACATAACGGTATCAACAGCAGTAGATACATGGATCACCTCCCACTCCTTTCACGGCGCAATATCCTTCAGGAAGAAACATTTCGTCTGGCCGGATTCGATATAACGGCCTTTCCCATCCCTCACGATGCCACAGAAAACGTAGGGTACCATATCACGGCTCCGGGCTTCAGCTTCACGCTGTGCACCGATGTCGGACACATCACCGACACCATTTCTCACTATGCTTCCAAAGCCGATTATCTCGTTATGGAAGCCAACTATGACTGTGAGATGCTGCTAAGCGGACCCTATCCGGAGTTTCTGAAAGAGCGAGTATCGGGGCCGAACGGACATCTGAGCAATCAAGAAACGGGCGACTTCCTTGCCAGAACGTTCCATCCGGGGATGAAACACGTATGGCTGTGCCACCTGAGCAAGGACAACAACCACCCCGACCTGTGCTGGAAATCCATCGAATATCGCCTGTTCAGTGAGGGGATTCGTGTCGGAAAAGATATGGAACTCACCGTACTCAAGCGTACATCCCCCTCATCTCTATATACTCTTTTAGAGGAC","6.50","-4.43","30103","MIKFMSIASGSSGNCYYLSNGNQALLIDAGIPLRSISKALKDHQLPIEGNVVGVLVTHDHADHIRTIGCLGEKFHLPVFATERVHNGINSSRYMDHLPLLSRRNILQEETFRLAGFDITAFPIPHDATENVGYHITAPGFSFTLCTDVGHITDTISHYASKADYLVMEANYDCEMLLSGPYPEFLKERVSGPNGHLSNQETGDFLARTFHPGMKHVWLCHLSKDNNHPDLCWKSIEYRLFSEGIRVGKDMELTVLKRTSPSSLYTLLED","2228584 2227778","TIGR ID: PG2120","conserved hypothetical protein (yycJ)","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 3-262 are 31% similar to emb|CAB65453.1| VicX protein of Streptococcus pyogenes, residues 1-266 are 30% similar to YycJ protein of Staphylococcus aureus, residues 2-264 are 30% similar to pir||A70090 hypothetical protein yycJ of Bacillus subtilis.","
InterPro
IPR001279
Domain
Beta-lactamase-like
PF00753\"[12-195]TLactamase_B
noIPR
unintegrated
unintegrated
G3DSA:3.60.15.10\"[15-253]TG3DSA:3.60.15.10
SSF56281\"[2-197]TSSF56281


","BeTs to 5 clades of COG1235COG name: Metal-dependent hydrolases of the beta-lactamase superfamily IFunctional Class: RThe phylogenetic pattern of COG1235 is amtK-q-CeB------o-INxNumber of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","Residues 17-222 are 31% similar to a (PROTEIN HYDROLASE CONSERVED INTERGENIC REGION PHNP LONG) protein domain (PD003027) which is seen in O84743_CHLTR.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Mar 28 15:11:01 MST 2001","Wed Mar 28 15:11:01 MST 2001","Wed Mar 28 15:11:01 MST 2001","","Wed Mar 28 15:11:01 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 28 15:11:01 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 12 to 195 (E-value = 1.7e-10) place PG1853 in the Lactamase_B family which is described as Metallo-beta-lactamase superfamily (PF00753)","Wed Mar 28 15:11:01 MST 2001","34541698","","","","","","1","","","PG2120" "PG1854","2229717","2228641","1077","ATGCAAACTAAATCTGCTTCAGGACGTTCTGCGATTCTCCTCATATATACGGGGGGGACAATTGGTATGATTGAGAATCCGGAGACGAAAGTATTAGAAGCTTTCGACTTCAAATATCTGGAAACCAATGTGCCGGAACTGAAAAATTTCGGTTTCAAAATCGACTCCATCCAGTTTGATCCTCCCATCGACTCGGCCGCTATCTCTCCGGATTTGTGGGTAAGGCTGGCCGACACCATTCGGGAGAATTACCGGGCCTACGACGGTTTTGTCATCCTACACGGCACTGATACGATGGCCTACACGGCCTCTGCTCTAAGCTTTATGCTGGATGATCTGCAGAAACCCGTAATCTTGACAGGGTCACAGCTGCCTATCGGTACCCTTCGTACGGATGGCAAAGAAAACCTCATCACCGCTATCGAAATTGCTGCAGCCAAACAAAACGGCTATGCCCGCGTACCGGAAGTTTGTATTTTCTTCGACAACTATCTGATGCGTGGCAATCGTACATCGAAAGTCAGTGCAGACCAGTTCGACGCCTTTGCTTCATACAACTTTTCACCCTTGGCCTATGCCGGTATCGACATTCGATACGAGGATGCTCTGATAGCAGACCGAGGGGCCGATGCCGCCCTCAGTGTCCAGACGGAAATGGACAGAAACGTTGTGATCCTGAAAATATTCCCCGGCATTACACGAGAAGTAGTGGAGAGCATTCTCGGCATCCCCTCACTGAAGGGTGTAGTCATGGAGACATACGGTAGTGGCAATGCCCCCATGGAGCCGTGGTTCCTGAATGCTCTGGAGAAGGCCGTTCAGCGTGGAATCGTCATCGTCAATGTTACCCAATGCGTATCGGGCTATGTGGATATGCATCGATACGAAACGGGGCATCAACTCGAAAACATCGGACTTATCAGCGGTTATGACAGTACGACGGAGTGTGCCATCATCAAGCTCATGTATCTGTTCGGGCGTGGCTATACACCGGAGCGTGTAAAAGCAGAGATGAAACGCTCTCTAAAAGGAGAAATAAGCGTGGGCGAAGGGTACGAAAACAACAAATGCCGATGC","4.80","-9.49","39699","MQTKSASGRSAILLIYTGGTIGMIENPETKVLEAFDFKYLETNVPELKNFGFKIDSIQFDPPIDSAAISPDLWVRLADTIRENYRAYDGFVILHGTDTMAYTASALSFMLDDLQKPVILTGSQLPIGTLRTDGKENLITAIEIAAAKQNGYARVPEVCIFFDNYLMRGNRTSKVSADQFDAFASYNFSPLAYAGIDIRYEDALIADRGADAALSVQTEMDRNVVILKIFPGITREVVESILGIPSLKGVVMETYGSGNAPMEPWFLNALEKAVQRGIVIVNVTQCVSGYVDMHRYETGHQLENIGLISGYDSTTECAIIKLMYLFGRGYTPERVKAEMKRSLKGEISVGEGYENNKCRC","2229767 2228640 [Bad Olap 2407 37 1]","TIGR ID: PG2121","L-asparaginase I","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 9-348 are 42% similar to gb|AAF95143.1| L-asparaginase I of Vibrio cholerae, residues 9-347 are 43% similar to gb|AAC74837.1| cytoplasmic L-asparaginase I of Escherichia coli K12, residues 12-348 are 40% similar to dbj|BAA31197.1| Lysophospholipase of Rattus norvegicus.This sequence is similar to BT0526.","
InterPro
IPR006033
Family
L-asparaginase, type I
TIGR00519\"[9-348]TasnASE_I
InterPro
IPR006034
Family
Asparaginase/glutaminase
PD003221\"[63-290]TAsp/Glutamnse
PR00139\"[12-23]T\"[88-106]T\"[272-290]TASNGLNASE
PIRSF001220\"[9-346]TL-ASNase_gatD
PTHR11707\"[60-346]TAsp/Glutamnse
PF00710\"[11-335]TAsparaginase
PS00144\"[14-22]?ASN_GLN_ASE_1
PS00917\"[89-99]TASN_GLN_ASE_2
SSF53774\"[8-341]TAsp/Glutamnse
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.1170\"[6-223]TG3DSA:3.40.50.1170
PIRSF500176\"[9-344]TL_ASNase
PTHR11707:SF3\"[60-346]TPTHR11707:SF3


","BeTs to 9 clades of COG0252COG name: L-asparaginaseFunctional Class: EThe phylogenetic pattern of COG0252 is amtKY---EBrhuj-------Number of proteins in this genome belonging to this COG is 1","***** IPB000267 (Asparaginase/glutaminase family) with a combined E-value of 4.4e-17. IPB000267 88-123","Residues 11-327 are 44% similar to a (L-ASPARAGINASE HYDROLASE L-ASPARAGINE AMIDOHYDROLASE) protein domain (PD003221) which is seen in ASG1_ECOLI.","","Thu Jun 14 13:05:41 MDT 2001","","Thu Jun 14 13:05:41 MDT 2001","Thu Jun 14 13:05:41 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:05:41 MDT 2001","Thu Jun 14 13:05:41 MDT 2001","","","Thu Mar 22 15:46:12 MST 2001","Tue Dec 2 16:42:04 2003","Fri Feb 2 11:30:38 MST 2001","Mon Jun 25 08:57:27 MDT 2001","Mon Jun 25 08:57:27 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 22 15:46:12 MST 2001","-63% similar to PDB:2OCD Crystal structure of L-asparaginase I from Vibrio cholerae O1 biovar eltor str. N16961 (E_value = 3.3E_71);-52% similar to PDB:1WLS Crystal structure of L-asparaginase I homologue protein from Pyrococcus horikoshii (E_value = 2.5E_39);-52% similar to PDB:1WNF Crystal Structure of PH0066 from Pyrococcus horikoshii (E_value = 2.5E_39);-52% similar to PDB:1ZQ1 Structure of GatDE tRNA-Dependent Amidotransferase from Pyrococcus abyssi (E_value = 2.1E_38);-49% similar to PDB:2D6F Crystal structure of Glu-tRNA(Gln) amidotransferase in the complex with tRNA(Gln) (E_value = 9.0E_29);","","","Residues 16 to 336 (E-value = 2.8e-50) place PG1854 in the Asparaginase family which is described as Asparaginase (PF00710)","Mon Jun 25 08:57:27 MDT 2001","34541699","","","","","","1","","","PG2121" "PG1855","2230040","2229732","309","ATGCCATTCTCGGAAAGTCTCTTCATGGTCTCGGGCCCACGGATAGAGAGCAAAGAAGTTTATCCTCTTGACTTTTTACTCCTGATCGTTTTCCTCTCTACGCTCTCAGACAATATCGTGCTAAGCTTATTTTGGATGGAGCATCATCAGGTTTATATGTGTGTTAACACTTCAAAAACGATTGCTCTGGCCGTAAAGCATGCTCTGAACGAGCTTTTATTATCTTTGCGCACCGGCCGTATCCAAAGCCATAGTCCGATGGCTGTACGATCTTGGAAGCCGGAAGGAAAAAACCGCCACCGTTTTGTT","10.10","4.14","11869","MPFSESLFMVSGPRIESKEVYPLDFLLLIVFLSTLSDNIVLSLFWMEHHQVYMCVNTSKTIALAVKHALNELLLSLRTGRIQSHSPMAVRSWKPEGKNRHRFV","2230039 2229731 [Shorter 2406 37 12]","Corresponds to the N-terminal domain of full-length ISPg2 sequences such as PG1522. An added domain is unique to this sequence (unlike PG0889 and PG1058).TIGR ID: PG2122","ISPg2 fragment","Cytoplasm","Residues 5-38 are 79% similar to previously sequenced putative transposase protein in P.gingivalis in Genbank, AAC45368.No significant hits in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-36]?signal-peptide
tmhmm\"[25-45]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 5-38 are 79% similar to a (PUTATIVE TRANSPOSASE) protein domain (PD103322) which is seen in P95492_PORGI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Fri Feb 16 16:17:26 MST 2001","Fri Feb 16 16:17:26 MST 2001","Fri Feb 16 16:17:26 MST 2001","Fri Feb 2 11:44:48 MST 2001","","Fri Feb 16 16:17:26 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1855 is similar to the N-terminal domain of full-length ISPg2 sequences such as PG1522. See also PG1905, PG1185, PG0775 and PG0249.","Fri Feb 16 16:17:26 MST 2001","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","PG2122" "PG1856","2230034","2230303","270","ATGGCATTCAGCTCAAGGAAAGAAATCTCATCAAGGAATAGCGAACGATCGACGGACGATACGGCTTGCTTACGAATGTCCGAGAATGGAGTAGCTTTGTGGTGCGAGAAAAATGTTTTTGTGCAAGAAAATCAGCCGTTTGTGGATTATCTTCCTTACTTTTGCAGCAAGGTCATTGGAACGCTGTCTATCGGGAAGAATCTCTGCGGATCCTTTTCGGGGGAAAAACAAAGTATTCCGGACAAAACAATAATGGTTAACATTAAAATA","7.70","0.80","10074","MAFSSRKEISSRNSERSTDDTACLRMSENGVALWCEKNVFVQENQPFVDYLPYFCSKVIGTLSIGKNLCGSFSGEKQSIPDKTIMVNIKI","2230033 2230302","TIGR ID: PG2123","hypothetical protein","Periplasm, Cytoplasm","No significant hits in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Fri Feb 2 12:07:09 MST 2001","Fri Feb 2 12:07:09 MST 2001","Fri Feb 2 12:07:09 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","-62% similar to PDB:1K1W Crystal structure of 4-alpha-glucanotransferase from thermococcus litoralis (E_value = );-62% similar to PDB:1K1X Crystal structure of 4-alpha-glucanotransferase from thermococcus litoralis (E_value = );-62% similar to PDB:1K1Y Crystal structure of thermococcus litoralis 4-alpha-glucanotransferase complexed with acarbose (E_value = );-68% similar to PDB:1RII Crystal structure of phosphoglycerate mutase from M. Tuberculosis (E_value = );","","","No significant hits to the Pfam 11.0 database","","34541700","","","","","","1","","","PG2123" "PG1857","2230317","2231324","1008","ATGACGAAAGTAGGTATTAACGGCTTTGGCCGTATCGGCCGCTTGGTATTCCGCGCAGCACAAACACAAAACAGAAGCGACATTGAAATTGTAGCCATCAACGACCTGATCGATGTGGAATATATGGCGTACATGCTCAAGTACGACAGTGTACACGGTCGTTTCAATGGGACAGTCGAAGTCAAAGATGGTCAGCTGATAGTAAACGGGAAAGCCATTCGAGTTACAGCTGAGAAGAACCCTGCCGATCTGAAATGGGATCAAGTCGGAGTGGAATACGTAGTGGAATCCACCGGTCTTTTCCTCACGAAAGAAAAATCCGAAGCACACCTTGCTGCCGGTGCCAAGTATGTAGTTATGTCGGCTCCCTCTAAAGACGACACGCCTATGTTCGTATGCGGAGTGAATACGGATAAGTACGTAAAAGGCACGAAGATCGTTTCCAACGCTTCTTGTACCACCAACTGTCTGGCACCCATTGCCAAGGTACTGAATGACAACTGGGGCATGGTAGGAGGTCTCATGACCACGGTACATGCCACCACAGCTACGCAGAAGACAGTGGACGGCCCCTCTGCAAAAGACTGGCGCGGCGGTAGAGCAGCAGGCGGCAATATCATCCCCTCTTCCACCGGTGCAGCCAAAGCAGTAGGCAAGGTGATCCCCGAACTGAACGGCAAACTGACGGGTATGTCATTCCGTGTGCCGACACTGGACGTATCGGTAGTAGACCTGACATGCCAGTTGGCGAAACCGGCTAAATACGAAGATATTTGTGCTGCCATGAAGAAAGCTTCGGAAGGCGAACTCAAAGGCATTTTGGGCTACACGGACGAAGAAGTGGTTTCCTCCGACTTCATCGGCGAAACCCGTACTTCCGTATTCGATGCCAAGGCCGGTATCGCACTTACGGATACTTTTGTGAAGATCGTTTCATGGTACGACAACGAAATCGGATACTCCAACAAAGTACTCGATCTCATCGCCTACATGGCTAAGGTAAACGCA","7.30","0.50","36003","MTKVGINGFGRIGRLVFRAAQTQNRSDIEIVAINDLIDVEYMAYMLKYDSVHGRFNGTVEVKDGQLIVNGKAIRVTAEKNPADLKWDQVGVEYVVESTGLFLTKEKSEAHLAAGAKYVVMSAPSKDDTPMFVCGVNTDKYVKGTKIVSNASCTTNCLAPIAKVLNDNWGMVGGLMTTVHATTATQKTVDGPSAKDWRGGRAAGGNIIPSSTGAAKAVGKVIPELNGKLTGMSFRVPTLDVSVVDLTCQLAKPAKYEDICAAMKKASEGELKGILGYTDEEVVSSDFIGETRTSVFDAKAGIALTDTFVKIVSWYDNEIGYSNKVLDLIAYMAKVNA","2230316 2231323","ee Gu et al. J.Bact.177:2594 (1995). See Prosite PDOC00069. From Prosite: Glyceraldehyde 3-phosphate dehydrogenase (EC1.2.1.12) (GAPDH) is a tetrameric NAD-bindingenzyme common to both the glycolytic andgluconeogenic pathways. A cysteine in the middleof the molecule is involved in forming a covalentphosphoglycerol thioester intermediate.TIGR ID: PG2124","glyceraldehyde 3-phosphate dehydrogenase","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 3-333 are 74% similar to gb|AAF95148.1| glyceraldehyde 3-phosphate dehydrogenase of Vibrio cholerae, residues 3-333 are 72% similar to gb|AAC74849.1| glyceraldehyde-3-phosphate dehydrogenase A of Escherichia coli K12, residues 1-330 are 70% similar to emb|CAA46323.1| glyceraldehyde 3-phosphate dehydrogenase of Leishmania mexicana.This sequence is orthologous to CT505 and BT4263.","
InterPro
IPR000173
Family
Glyceraldehyde 3-phosphate dehydrogenase
PR00078\"[110-123]T\"[146-164]T\"[173-189]T\"[230-247]T\"[270-285]TG3PDHDRGNASE
PTHR10836\"[2-334]TGAP_DH
PF00044\"[2-152]TGp_dh_N
PF02800\"[157-314]TGp_dh_C
PS00071\"[150-157]TGAPDH
InterPro
IPR006424
Family
Glyceraldehyde-3-phosphate dehydrogenase, type I
TIGR01534\"[3-326]TGAPDH-I
noIPR
unintegrated
unintegrated
G3DSA:3.30.360.10\"[150-316]TG3DSA:3.30.360.10
SSF51735\"[2-169]TSSF51735
SSF55347\"[152-315]TSSF55347


","BeTs to 14 clades of COG0057COG name: Glyceraldehyde-3-phosphate dehydrogenaseFunctional Class: GThe phylogenetic pattern of COG0057 is amtkYqvCEBrhUJgpolin-Number of proteins in this genome belonging to this COG is 2","***** IPB000173 (Glyceraldehyde 3-phosphate dehydrogenase) with a combined E-value of 5.1e-141. IPB000173A 3-18 IPB000173B 90-124 IPB000173C 152-202 IPB000173D 205-258 IPB000173E 307-327","Residues 42-116 are 74% similar to a (DEHYDROGENASE OXIDOREDUCTASE NAD GLYCERALDEHYDE) protein domain (PD000255) which is seen in G3P1_ECOLI.Residues 255-332 are 75% similar to a (DEHYDROGENASE OXIDOREDUCTASE NAD GLYCERALDEHYDE) protein domain (PD000248) which is seen in Q37264_PINSY.Residues 3-38 are 86% similar to a (DEHYDROGENASE OXIDOREDUCTASE NAD GLYCERALDEHYDE) protein domain (PD000269) which is seen in G3P1_ECOLI.Residues 118-156 are 76% similar to a (DEHYDROGENASE OXIDOREDUCTASE NAD GLYCERALDEHYDE) protein domain (PD000250) which is seen in G3P_BUCAP.Residues 157-251 are 70% similar to a (DEHYDROGENASE OXIDOREDUCTASE NAD GLYCERALDEHYDE) protein domain (PD000244) which is seen in G3PD_MAIZE.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Mon Jan 5 11:35:26 2004","Wed Mar 22 11:12:22 MST 2000","Mon Jan 5 11:35:26 2004","Mon Feb 5 16:46:50 MST 2001","Mon Jan 5 11:35:26 2004","Mon Jan 5 11:35:26 2004","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Jan 5 11:35:26 2004","-83% similar to PDB:1DC3 STRUCTURAL ANALYSIS OF GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE FROM ESCHERICHIA COLI: DIRECT EVIDENCE FOR SUBSTRATE BINDING AND COFACTOR-INDUCED CONFORMATIONAL CHANGES (E_value = 1.5E_134);-83% similar to PDB:1DC4 STRUCTURAL ANALYSIS OF GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE FROM ESCHERICHIA COLI: DIRECT EVIDENCE FOR SUBSTRATE BINDING AND COFACTOR-INDUCED CONFORMATIONAL CHANGES (E_value = 1.5E_134);-83% similar to PDB:1DC5 STRUCTURAL ANALYSIS OF GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE FROM ESCHERICHIA COLI: DIRECT EVIDENCE FOR SUBSTRATE BINDING AND COFACTOR-INDUCED CONFORMATIONAL CHANGES (E_value = 1.5E_134);-83% similar to PDB:1DC6 STRUCTURAL ANALYSIS OF GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE FROM ESCHERICHIA COLI: DIRECT EVIDENCE FOR SUBSTRATE BINDING AND COFACTOR-INDUCED CONFORMATIONAL CHANGES. (E_value = 1.5E_134);-83% similar to PDB:1GAD COMPARISON OF THE STRUCTURES OF WILD TYPE AND A N313T MUTANT OF ESCHERICHIA COLI GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASES: IMPLICATION FOR NAD BINDING AND COOPERATIVITY (E_value = 1.5E_134);","","","Residues 2 to 152 (E-value = 8.2e-99) place PG1857 in the Gp_dh_N family which is described as Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain (PF00044)Residues 153 to 314 (E-value = 1.6e-118) place PG1857 in the Gp_dh_C family which is described as Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain (PF02800)","Mon Jan 5 11:35:26 2004","34541701","","","","","","1","","","PG2124" "PG1858","2232347","2231472","876","ATGAGCTTGCAGGATACTTGGGGGGGTAAAATGAATACGCTTGGAGACCGGGTCTTGCTGTGCAATGACAAGCGATCCCTCCCGGCTGCAGCTGTGGCTACGCCGTTCCTGTTCGAATCCATGCTCTTTTCTGTTTGCACGCGTGGCTATGCACGACTATTGATCGATTCGAGGGAGATCGAGGTGAAGGAGGGCGAGCTATTGGTAGTCATGCCTCGCAAGACGATAGAAGTGATAGAATCCTCTTGCTTTCGTGCCTTTCATTTATGTCTGGACAAGGAGATTCTTGCTTTATCGGCGATCAGGATCAGCGGTTTTATCTCTATCATCAATAAGCTACACAGCAACGAACCGTTCCGTCCGGAACGCATGGAGAAAGATTTTCTGACGGCAACGTTGGATCTCATCCGCAACGCCCTGCAAAACGGGGGGCGTCATCAGGAAGAAATTGTCATCTATCTGATCAGCTCTCTCTTTCTCTTTCTTGACGATATGATTGCCGACGAGGTCGAGAAGGACTGCAAGCACACCAGGTCGGAGACTATTTGCCGCGACTTTCTGCTCCTCGTCTCCGAGCATCACAAAGAGCAGCATACGGTCAAGTTCTATGCAGACAGGCTGTGCCTCAGCTCCAAACATTTGGCACTGACGATAAAGACCGTCATGGGACAGTCTGCCTCCAAAGTCATCAACAGCTTCATCATCCAGCAGGCCAAGTCCTTGCTGCGCTATACGGATAAGACGGTCCAGGAGATCGGCTATGAGCTGAACTTCTCCACCCAGTCGTTTTTCGGCAAGTATTTCAAGCAGCACACCGGTATGAGTCCGGGCGAATATCGCAGTCAGGAAGCTCGAAATAGACAGTCCGAAGAGAGC","7.20","0.85","33432","MSLQDTWGGKMNTLGDRVLLCNDKRSLPAAAVATPFLFESMLFSVCTRGYARLLIDSREIEVKEGELLVVMPRKTIEVIESSCFRAFHLCLDKEILALSAIRISGFISIINKLHSNEPFRPERMEKDFLTATLDLIRNALQNGGRHQEEIVIYLISSLFLFLDDMIADEVEKDCKHTRSETICRDFLLLVSEHHKEQHTVKFYADRLCLSSKHLALTIKTVMGQSASKVINSFIIQQAKSLLRYTDKTVQEIGYELNFSTQSFFGKYFKQHTGMSPGEYRSQEARNRQSEES","2232346 2231471","TIGR ID: PG2125","transcription regulator","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 53-282 are 27% similar to gb|AAG17456.1|AF302797_2 regulatory protein of Pseudomonas sp. IMT40, residues 48-280 are 23% similar to gb|AAG03637.1|AE004463_2 probable transcriptional regulator of Pseudomonas aeruginosa, residues 178-280 are 34% similar to gb|AAF03756.1|AF036244_2 regulatory protein of Azotobacter chroococcum.","
InterPro
IPR000005
Domain
Helix-turn-helix, AraC type
PR00032\"[249-264]T\"[264-280]THTHARAC
PF00165\"[237-281]THTH_AraC
SM00342\"[197-280]THTH_ARAC
PS01124\"[184-282]THTH_ARAC_FAMILY_2
InterPro
IPR001452
Domain
Src homology-3
PR00452\"[58-73]T\"[271-283]TSH3DOMAIN
InterPro
IPR009057
Domain
Homeodomain-like
SSF46689\"[233-282]THomeodomain_like
InterPro
IPR012287
Domain
Homeodomain-related
G3DSA:1.10.10.60\"[233-281]THomeodomain-rel
noIPR
unintegrated
unintegrated
PTHR11019\"[190-282]TPTHR11019
PTHR11019:SF11\"[190-282]TPTHR11019:SF11


","BeTs to 4 clades of COG2207COG name: AraC-type DNA-binding domain-containing proteinsFunctional Class: KThe phylogenetic pattern of COG2207 is ------vCEBRH---------Number of proteins in this genome belonging to this COG is 4","***** IPB000005 (AraC type helix-turn-helix domain) with a combined E-value of 3e-10. IPB000005 249-280","Residues 198-282 are 29% similar to a (PROTEIN TRANSCRIPTION REGULATION DNA-BINDING) protein domain (PD000394) which is seen in O88020_STRCO.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon Feb 5 16:52:06 MST 2001","Mon Feb 5 16:52:06 MST 2001","Mon Feb 5 16:52:06 MST 2001","Fri May 18 16:36:41 MDT 2001","Fri May 18 16:36:41 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 43-280 are 24% similar to PG1266, a probable transcriptonal regulator Ps pobR, and residues 43-280 are 24% similar to PG0741, a conserved hypothetical protein with DNA-binding domain.","Tue Jun 5 14:27:50 MDT 2001","Fri May 18 16:36:41 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 237 to 281 (E-value = 2e-07) place PG1858 in the HTH_AraC family which is described as Bacterial regulatory helix-turn-helix proteins, araC family (PF00165)","Fri May 18 16:36:41 MDT 2001","34541702","","","","","","1","","","PG2125" "PG1859","2233205","2232534","672","ATGACGCTCATTGCCGAACGGTTAGTCCCCATTCTCCGCTCACTGCCGCAGGGTGTGCGTCTGGCGGCTGTTTCCAAGTTCCATCCCGTGGAAGAACTCATGGAGGCTTATGAGGCCGGTCAAAGAGTTTTCGCCGAGAGTCGGGTACAGGAACTGATGAGCAAAGTGGAAGCGATGCCTGATGATGTGGAGTGGCATTTCATCGGGCCGCTACAGACAAACAAGGTGAAGTACATCGTCCCTTTCATCTCGATGATCCAGAGCGTATCCTCTCTGAAGTTGTTCGACGAGATCAGCCGTCAGGCGTCGAAAGTAGGGCGTACCGTGCCGGTTTTATTGGAAGTGCATATCGCATCGGAGGATACCAAAAGCGGCTTTACGCCGGAGGAATTGCCACAAGTTCTGGAGGCTGTTTTGGCACGCGGCTCCGATACCGGAGTCAAGATTGCCGGTCTGATGGGGATGGCTACATTTACGGACGATAGGGAGCAGATTCGCAGAGAGTTTCGCCGGTTGGCATCGCTGTTCAGAGAGATGAAAGAGCGTTTCTTCTCCGATTCTGCTGATTTTTGTGAGCTTTCGATGGGGATGAGCGGCGATTTCGAGCTGGCCATCGAAGAAGGAAGCACCATCGTTCGTATCGGAACTACGATCTTCGGCGAACGACGCTAT","5.00","-6.30","25228","MTLIAERLVPILRSLPQGVRLAAVSKFHPVEELMEAYEAGQRVFAESRVQELMSKVEAMPDDVEWHFIGPLQTNKVKYIVPFISMIQSVSSLKLFDEISRQASKVGRTVPVLLEVHIASEDTKSGFTPEELPQVLEAVLARGSDTGVKIAGLMGMATFTDDREQIRREFRRLASLFREMKERFFSDSADFCELSMGMSGDFELAIEEGSTIVRIGTTIFGERRY","2233204 2232533","TIGR ID: PG2126","conserved hypothetical protein","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 20-224 are 44% similar to gb|AAC06592.1| hypothetical protein of Aquifex aeolicus, residues 16-219 are 42% similar to gb|AAD36796.1|AE001812_6 conserved hypothetical protein of Thermotoga maritima, residues 19-224 are 41% similar to hypothetical protein of Arabidopsis thaliana.","
InterPro
IPR001608
Domain
Alanine racemase, N-terminal
PF01168\"[4-224]TAla_racemase_N
InterPro
IPR011078
Family
Predicted pyridoxal 5'-phosphate-dependent enzyme, YBL036C type
PTHR10146\"[16-224]TPP_YBL036C
TIGR00044\"[1-222]TPP_YBL036C
PS01211\"[65-79]TUPF0001
noIPR
unintegrated
unintegrated
G3DSA:3.20.20.10\"[1-222]TG3DSA:3.20.20.10
PIRSF004848\"[1-224]TYBL036c_PLPDEIII
SSF51419\"[1-220]TSSF51419


","BeTs to 8 clades of COG0325COG name: Predicted enzyme with a TIM-barrel foldFunctional Class: RThe phylogenetic pattern of COG0325 is ----yqvcebrhuj-------Number of proteins in this genome belonging to this COG is 1","***** IPB001608 (Uncharacterized protein family UPF0001) with a combined E-value of 3.7e-58. IPB001608A 21-55 IPB001608B 58-71 IPB001608C 109-125 IPB001608D 146-155 IPB001608E 193-222","Residues 20-222 are 44% similar to a (PROTEIN INTERGENIC REGION PROLINE) protein domain (PD004988) which is seen in Y274_AQUAE.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon Feb 5 16:43:26 MST 2001","Mon Feb 5 16:43:26 MST 2001","Mon Feb 5 16:43:26 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","-57% similar to PDB:1B54 CRYSTAL STRUCTURE OF A YEAST HYPOTHETICAL PROTEIN-A STRUCTURE FROM BNL'S HUMAN PROTEOME PROJECT (E_value = 4.4E_27);-57% similar to PDB:1CT5 CRYSTAL STRUCTURE OF YEAST HYPOTHETICAL PROTEIN YBL036C-SELENOMET CRYSTAL (E_value = 4.4E_27);-53% similar to PDB:1W8G CRYSTAL STRUCTURE OF E. COLI K-12 YGGS (E_value = 1.7E_26);","","","Residues 1 to 224 (E-value = 7.4e-22) place PG1859 in the Ala_racemase_N family which is described as Alanine racemase, N-terminal domain (PF01168)","","34541703","","","","","","1","","","PG2126" "PG1860","2233645","2233205","441","ATGGCTGCATGGTTCGAATGCAAGGTCACGTATGAGAAGGTGGCCGATAATGGAATGCCTAAGAAGGTGGTGGAAAGCTACTTGGTAGATGCCGATTCTTTCACATTGGCAGAGGCCAAGATGATAGAGGAGATCACCCCTTTCGTCAGTATGGGAGAGTTCAACATCAGTAATATTCGCAAGGTAAACTATGCCGAACTCTTCCTGAACGAGGACGACAAATGCGATCGCTACTATCGTTGCAAGGTGCTATACGTGACGATAGATGAGAAGAACGGGGTGGAGAAAAAGACGCCGGCGTTCATGCTCGTCAAGTCGGACAGCTTGCCCAATGCGGTGGCCGAACTGGAAAAGCAGATGGGCAAGGGATTGGCCGACTATGAGATAGCATCAGTAGCGGAGACTGCACTGATGGATGTTTTCCAATACGTGCCGGCACAA","4.50","-8.14","16636","MAAWFECKVTYEKVADNGMPKKVVESYLVDADSFTLAEAKMIEEITPFVSMGEFNISNIRKVNYAELFLNEDDKCDRYYRCKVLYVTIDEKNGVEKKTPAFMLVKSDSLPNAVAELEKQMGKGLADYEIASVAETALMDVFQYVPAQ","2233644 2233204","TIGR ID: PG2127","hypothetical protein","Cytoplasm","No significant hits in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon Feb 5 16:28:20 MST 2001","Mon Feb 5 16:28:20 MST 2001","Mon Feb 5 16:28:20 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541704","","","","","","1","","","PG2127" "PG1861","2234898","2233963","936","CTGCTTGGCTTTAGCCGTCAGGCCTTTTATAAACGTCATCTCAACGATTTAGCTAGGCACGAGGAGGATGTCCTATGCAGTAGTATCATCCAATATTGTTGGCACTTAAGACAAGCAGAGCACCTACCTCAAGCCGGCTTCCGAGAGCTCATGGTGCTTTGTCAGCAATACTTCGGCCCCAAGTTCACGCTTGGGCGCGATCGCTTTTGCGCCCTACTCAGACGCCATGGTATGATGCTGCGCAAACGGTCTGTGCGCCCTCGGACAACCAACTCTCGGCATAGGCTCTACAAGTATGAAGACCTGCTCAATACAGAGCCTAAGTTTGTGCCTCAAAGACCTGGGGAACTCCTTGTAGCAGACATCACCTACGTGGCTTACCAAGATGGGTTTGCCTATCTCTCCCTACTGACCGATGCCTATAGTCGCTGTATCGTAGGGTATTGCTTACATCCGACCCTGGAAGTTGAAGGCTGTTTGAATGCTCTGCATCAAGCCTTTGCTTTCTACGATCAACATCAAATTGATACGACCAATATGATTCATCATAGCGACCGAGGCATTCAGTATGCCGGTAAGAGTTACACCGATCTGTTGCATGGGCGAGGCTGGCGCATCAGTATGACTCAGACGGGAGATCCTCTGCATAATGCATTGGCCGAGCGGATGAACAATACGCTCAAGAACTCATGGCACATCTCCTCTTCGAAACAATCTTTTGATCAAGCACTCCTTTCTGTAGACCGAGCCGTGCGCATGTACAACGAGGCGCGTCCACATCAAGCTCTAAGGGCGAAAACGCCTATGCAAGTCATTACACCGGAGTCTGAAAATCCGTTACTGGCAAGGATCGAACATTGGCCGGAGATTGCCCCCGAGCTATACCGAAGAATGAATGTCAGACAAAAAGCTAACTTTGCTCGTGTCAACCGAAAT","10.00","14.52","36460","LLGFSRQAFYKRHLNDLARHEEDVLCSSIIQYCWHLRQAEHLPQAGFRELMVLCQQYFGPKFTLGRDRFCALLRRHGMMLRKRSVRPRTTNSRHRLYKYEDLLNTEPKFVPQRPGELLVADITYVAYQDGFAYLSLLTDAYSRCIVGYCLHPTLEVEGCLNALHQAFAFYDQHQIDTTNMIHHSDRGIQYAGKSYTDLLHGRGWRISMTQTGDPLHNALAERMNNTLKNSWHISSSKQSFDQALLSVDRAVRMYNEARPHQALRAKTPMQVITPESENPLLARIEHWPEIAPELYRRMNVRQKANFARVNRN","2234747 2233962","One of eleven ISPg5 related elements in the genome (see Paralogs).Member of the IS3 family of insertion elements. See PG1862 for associated ORF.TIGR ID: PG2128","ISPg5 transposase","Cytoplasm","PG1861 is equivalent to the previously reported gb|AAF69128.1| in GenBANK.Numerous significant hits in gapped BLAST to transposase proteins; e.g. residues 91-213 are 55% similar to transposase homolog (U67062) of Bacteriodes thetaiotaomicrom, residues 64-268 are (33%) similar to InsB (AF153317) of Shigella dysenteriae, residues 64-268 are 33% similar to Hp1 (AF081284) of E.coli.","
InterPro
IPR001584
Domain
Integrase, catalytic core
PF00665\"[110-273]Trve
PS50994\"[110-276]TINTEGRASE
noIPR
unintegrated
unintegrated
G3DSA:3.30.420.10\"[113-231]Tno description


","No hit to the COGs database.","***** PF01836 (Transposase) with a combined E-value of 6.4e-22. PF01836B 103-154 PF01836C 181-190 PF01836D 215-222 PF01836E 253-272","No significant hit to the ProDom database.","","Thu Jun 14 13:06:12 MDT 2001","","Thu Jun 14 13:06:12 MDT 2001","Thu Jun 14 13:06:12 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:06:12 MDT 2001","Thu Jun 14 13:06:12 MDT 2001","","Mon Jun 25 08:54:16 MDT 2001","Fri Feb 9 15:58:39 MST 2001","Mon Jun 25 08:54:16 MDT 2001","Thu Nov 16 11:17:45 MST 2000","Mon Jun 25 08:54:16 MDT 2001","","yes","Fri Feb 20 15:41:32 MST 1998","PG1861 is paralogous to PG0007, PG1491, PG0391, PG0418, PG1436, PG1796, PG0034, PG0533, PG1247 and PG0841, all ISPg5 transposases.","Tue Jun 5 14:29:50 MDT 2001","Tue Jun 5 14:29:50 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 110 to 273 (E-value = 2.9e-29) place PG1861 in the rve family which is described as Integrase core domain (PF00665)","Mon Jun 25 08:54:16 MDT 2001","34541705","","Califano,J.V., Kitten,T., Lewis,J.P., Macrina,F.L., Fleischmann,R.D., Fraser,C.M.,Duncan,M.J. and Dewhirst,F.E. Characterization of Porphyromonas gingivalis insertionsequence-like element ISPg5.Infect. Immun. 68 (9), 5247-5253 (2000), PubMed: 10948151.","","Wed Dec 6 11:21:20 2000","","1","","","PG2128" "PG1862","2235341","2234955","387","TTGGGCGGGATGCAACCAGTATCCATTATGGGCAAACATTTAAACAACTTTGAACGCCTTAGCATCCTTGAGGATTACCTCTCGGGGTCAGATAGCAAAGTAGCCATTGAGCAGAAATATGGTCTAAGTCATGGTCTCATTCGCTCTTGGCTTAGTAAATTTGGACTCGAAGATAAAGTTCATCCGGTCCCAATGAAAGTGTCCCAATCCCCCCAGAGTGAGCTACCCCTGAACGAAAAAGAAGAGTTAGAGCAGCTACGTAAAGAAAATCGTGTCCTCAAGAGTCGTCTCAAGCGAGAAGAACTAGGGCATCAAGCCTACAAGCTACTTGTAGAGTTGGCAGAAGAAACCTACGGCATTCAGATACGAAAAAACTCCGAAGCCAAG","9.00","1.96","14755","LGGMQPVSIMGKHLNNFERLSILEDYLSGSDSKVAIEQKYGLSHGLIRSWLSKFGLEDKVHPVPMKVSQSPQSELPLNEKEELEQLRKENRVLKSRLKREELGHQAYKLLVELAEETYGIQIRKNSEAK","2235340 2234954","See PG1861 for associated transposase.Member of the IS3 family of insertion elements.TIGR ID: PG2129","ISPg5-related orf-1","Cytoplasm","PG1862 is equivalent to the previously reported gb|AAF69127.1 in GenBANK.Otherwise, no hits in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Fri Feb 9 17:15:58 MST 2001","Fri Feb 9 17:15:58 MST 2001","Fri Feb 9 17:15:58 MST 2001","Tue Dec 19 15:31:34 MST 2000","","","yes","Fri Feb 20 15:41:32 MST 1998","PG1862 is paralogously related to PG0008, PG1797, PG1490, PG1437, PG0033, PG0532, PG0392, PG1246, PG0840 and PG0419, all ORFs associated with ISPg5-related transposases. ","Tue Dec 19 15:31:34 MST 2000","Tue Jun 5 14:31:50 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Jun 5 14:31:50 MDT 2001","34541706","","Califano,J.V., Kitten,T., Lewis,J.P., Macrina,F.L.,Fleischmann,R.D., Fraser,C.M., Duncan,M.J. and Dewhirst,F.E.Characterization of Porphyromonas gingivalis insertionsequence-like element ISPg5.Infect. Immun. 68 (9), 5247-5253 (2000)20407340","","Fri Feb 9 17:15:58 MST 2001","","1","","","PG2129" "PG1862.1","2235725","2235348","378","GTGTTTTCCTTTTCATATGCTTTTTGTGTAATAAATTCTTACAGTATTTACATTACATGTGGCCATGTGAATGCAGAAGAAAGCAGCGGTCTTGGATTCGTCTCCTATTTCTGCTCTTTTTGTAAAGGCAAAATTATGCTACTGTACTCGCAGTTTTATACGGAGAATCACGTATTTTCTCTACGTATTAATGCGTATTTTTGGGGTTTTGCAGGTATTTTTATGGGCGCACTAAACTTGTTTTTTTGTGAATGTCGGATTGCTCGTTTTTTTAGTTTCGCCTTTTTGTCTCTACAAGGTGATATCGAGAGATGCTTCCGGTTCGAGAAAATAGAGAATCGACAAACGAAAAAAACATTGACGTGTACTGAAAAAAGT","","","14636","VFSFSYAFCVINSYSIYITCGHVNAEESSGLGFVSYFCSFCKGKIMLLYSQFYTENHVFSLRINAYFWGFAGIFMGALNLFFCECRIARFFSFAFLSLQGDIERCFRFEKIENRQTKKTLTCTEKS","","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
tmhmm\"[4-24]?\"[33-53]?\"[63-83]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG1863","2235710","2236288","579","ATGAAAAGGAAAACACGATTGCTGATTATCGGGATCATCCTCTTTGCAGGGCTGATCCCCACCCTTCGGGCACAGCAGATCGGACTGAAGACCAATCTGCTTTATTGGGGTACGACGACTCCCAATGCAGGATTGGAGTTTCGCATGGGAAAGAAGTGGACACTCGATGTTTCGGGAGGTTACAACCCTTTTACATTCAGCCACCATCGCAAACTCAAGCATTGGCTCGTGGCTCCGGAGCTTCGCTATTGGACGTGCGAAGCTTTCTCCGGCCACTTCTTCGGGCTTCACGGCATCGGAGGTGAGTACAATGTAAATGATATCGACATCCCCATCGGCCGGCTCAAAAAGCTCAACAACTACCGATACGAGGGATACGCCATCGGTGCAGGTCTGACCTATGGCTATCAGTGGCTGCTGGGCAAAAGATGGAACTTGGAGGCATCGATCAGCGGAGGATTCGTCCACTTCGATTATGACAAATTCGAATGTGCCAAGTGCGGCAAAAAGATCGCGGAAGGCAAGAACGACTACTTCGGTGTGACGAAAGCCACACTTTCGCTCATATACATCATTAAG","10.40","13.29","21979","MKRKTRLLIIGIILFAGLIPTLRAQQIGLKTNLLYWGTTTPNAGLEFRMGKKWTLDVSGGYNPFTFSHHRKLKHWLVAPELRYWTCEAFSGHFFGLHGIGGEYNVNDIDIPIGRLKKLNNYRYEGYAIGAGLTYGYQWLLGKRWNLEASISGGFVHFDYDKFECAKCGKKIAEGKNDYFGVTKATLSLIYIIK","2235709 2236287","TIGR ID: PG2130","hypothetical protein","Cytoplasm","No significant hits in gapped BLAST.","
noIPR
unintegrated
unintegrated
SSF103515\"[106-162]TSSF103515


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Jan 24 07:25:40 MST 2001","Wed Jan 24 07:25:40 MST 2001","Wed Jan 24 07:25:40 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","PG1863 is 49% similar to PG1894, another hypothetical protein.","Tue Mar 27 11:18:54 MST 2001","Tue Mar 27 11:18:54 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Mar 27 11:18:54 MST 2001","34541707","","","","","","1","","","PG2130" "PG1864","2236317","2237786","1470","ATGAAACAGAGTCGCTATATCATCCTGTCGTTTCTCTTCGGAATGTCTACGCTTGCCGTGACAGGCCAGACCCATCTCGGGGGCATTAAGGTGAGCGAGAAGCACGTGGTCAAGAAAACGGGACATACCGCCAACGTAAAGATGGACCTTGATCTGACGGCCATACCGGATATGAACAGCAATCTGCTGATGGTGGTTACCCCCATTATTCGTTCCAATACATCGAACGATCAAGTCGCTCTCCGCCCGTTCCTCCTGATGGGGAACAGACGTTATCGCATCATCGACCGTCGTATCGCTCTCGATAAGCACCACATCTACAATCAGCCCGACACCAAGCCTTCTGCGATGGTAAAGCGTCGCAACGGCAAGGAACAGAGCATGGACTATTCTGCCGCTACTCCATATAGGCCATGGATGCGCCACTCATCAATGATTCTATTGGCTGAGAACTCGGGCTGTGCCGACTGCCCACTCGGATCAGAAGAAACCACACTTACGGACGACGCTTTGGTGCCACTGTATGAAGCGGACTATCAATACGAGATCATTGTACCCGAGGGAGAGCTGCTGAAAAAACGCGAAGAGACTCTCTCCGCTCACTTAGCCTATCAGGTAGGGAAATATGTGGTCTTGCCTCAGTTCGACGGCAATCCGGCCGAGTTGGCACGTATCGACAGCAAACTGAAAGAAATCGGAAACGATAGCGATATCATTTTCGAAAAGCTCTCCATGGTAGGCTATGCTTCGCCGGAAGGTGGCGTAGAATACAACGCGAAGCTCTCCAAGGATAGGGCGCATTCATTTGCAAGCTATCTCGTTAACAAGTACCCCATCCTAAAAAGTCGATTCGAATACGATTGGAAAGGGCAGGATTGGGCAGGTCTGCGTGCGGCTGTAACCAAGAGCGGGCTCTCGCAAAAGGATGCCATACTGGAGATCATCGACCAAAAGCCGGTCGGTGAGCGTACAGCCGCACTGCGAGCTATCGATGGCGGGTCTCTCTATGCCACATTGCTCTCGGACTATTACCCCCCGCTTCGCCGAAGCGAGCTTACATTCCATATCGTGGTCAAAGGATTTGAGTTGGACAAAGCACGTGAAATTATCAAGACACACCCCTCTCGTCTGAGTCTGGCAGAGGTTTACGCCGTAGCGCAGAGCTATCCGGAAGGGAGCCACGAACGCTACGAAACGTGGACGATAGCAGAGAAAACTTTCCCGAAAGCGATAGAGCCGACAGCCAATGCGGCTATAATAGACCTTCGTGCCGGCAGGTATCCGCAGGCTCTGGCTCGACTCGAAGCACGCAAGAGCGAACCCAAACTATGGATGCTGTTGGGCTTGGCATATGCCTACAGCGAAAAATGGGCTGAAGCCGAGAGCTATCTTACTCGCGCTGCGCAGCAAGGCCGGCCCGGAGCACAACACAATCTGAACGAACTGCGACGCTATATGCAAGACAATCTC","9.20","6.83","55257","MKQSRYIILSFLFGMSTLAVTGQTHLGGIKVSEKHVVKKTGHTANVKMDLDLTAIPDMNSNLLMVVTPIIRSNTSNDQVALRPFLLMGNRRYRIIDRRIALDKHHIYNQPDTKPSAMVKRRNGKEQSMDYSAATPYRPWMRHSSMILLAENSGCADCPLGSEETTLTDDALVPLYEADYQYEIIVPEGELLKKREETLSAHLAYQVGKYVVLPQFDGNPAELARIDSKLKEIGNDSDIIFEKLSMVGYASPEGGVEYNAKLSKDRAHSFASYLVNKYPILKSRFEYDWKGQDWAGLRAAVTKSGLSQKDAILEIIDQKPVGERTAALRAIDGGSLYATLLSDYYPPLRRSELTFHIVVKGFELDKAREIIKTHPSRLSLAEVYAVAQSYPEGSHERYETWTIAEKTFPKAIEPTANAAIIDLRAGRYPQALARLEARKSEPKLWMLLGLAYAYSEKWAEAESYLTRAAQQGRPGAQHNLNELRRYMQDNL","2236316 2237785","Nucleotide sequence upstream from the major fimbrillin gene (fimA) and related to PG1893, a proposed novel secondary fimbrillin.TIGR ID: PG2131","60 kDa antigen","Cytoplasm, Outer membrane, Periplasm","PG1864 is essentially identical (99%) to a previously sequencedP.gingivalis protein in GenBank, BAA33066, described as a 60 kDa protein.No significant hits in gapped BLAST, all significant hits are to previously sequenced P.gingivalis proteins.","
InterPro
IPR006664
Domain
Bacterial outer membrane protein
PR01021\"[243-258]T\"[258-274]TOMPADOMAIN
InterPro
IPR006665
Domain
OmpA/MotB
PD000930\"[204-266]TOmpA/MotB
noIPR
unintegrated
unintegrated
SSF103088\"[197-314]TSSF103088
SSF48452\"[363-473]TSSF48452


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Sun Jun 24 14:26:32 MDT 2001","Thu Jun 7 13:32:18 MDT 2001","Thu Jun 7 13:23:49 MDT 2001","Wed Jan 10 16:26:52 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 31-482 are 32% similar to PG1893, an immunoreactive 53 kD antigen PG123; residues 248-460 are 26% similar to PG0916, a hypothetical protein (possible immunoreactive antigen).","Tue Jun 5 14:34:23 MDT 2001","Tue May 29 10:58:15 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue May 29 10:58:15 MDT 2001","34541708","","See Fimbrillins
","","Sun Jun 24 14:26:32 MDT 2001","","1","","","PG2131" "PG1865","2237840","2239003","1164","ATGAAAAAAACAAAGTTTTTCTTGTTGGGACTTGCTGCTCTTGCTATGACAGCTTGTAACAAAGACAACGAGGCAGAACCCGTTGTAGAAACTAACGCTACTGTTAGTTTCATAATTAAGAGCGGTGAGAGCCGCGCTGTAGGCGATGACCTTACAGATGCTAAGATCACAAAGCTCACCGCCATGGTCTATGCAGGTCAAGTTCAAGAAGGTATTAAGACAGTGGAAGAGGACGGCGGAGTCCTTAAAGTAGAAGGAATTCCGTGTAAATCTGGAGCCAACCGTGTCCTCGTCGTTGTAGCCAATCACAATTATGAGCTTACCGGTAAAAGTTTGAATGAGGTTGAGGCCTTGACGACTTCTTTGACAGCTGAAAACCAAAATGCCAAAAACTTGATCATGACAGGTAAGTCAGCAGCTTTTACAATCAAACCGGGCTCCAACCACTATGGCTATCCTGGTGGGACTGCATCCGACAACCTTGTTTCTGCTGGAACTCCTCTTGCCGTTACTCGCGTGCATGCCGGTATCTCATTCGCAGGAGTAGAGGTAAATATGGCTACACAGTATCAAAACTACTATTCTTTTAAACCAGCTGACGCTAAAATCGCAGCCCTTGTCGCAAAGAAAGATTCTAAGATTTTCGGCAATTCTTTGGTCTCAAACACTAATGCATATTTGTATGGAGTCCAAACGCCTGCCGGTCTTTACACTCCGGATGCTGCAGGAGAAACATACGAATTGGAGGCGTCTTTGAATACGAATTATGCTGTAGGTGCCGGCTTCTATGTGCTGGAAAGTAAATATGATGCAAGCAACGAGCTTCGTCCGACGATCCTTTGTATCTATGGAAAGCTGCTCGATAAGGACGGCAACCCTCTCACGGAACCAGCCTTGACGGATGCTATAAATGCCGGATTCTGCGACGGAGATGGCACGACTTACTATCCGGTATTGGTGAACTATGATGGCAATGGCTACATCTATTCAGGTGCTATTACCCAAGGACAAAACAAAATCGTTCGCAACAACCACTACAAGATTTCGCTGAACATCACCGGCCCCGGTACGAATACTCCTGAAAATCCTCAACCGGTACAAGCCAACCTGAATGTTACTTGCCAAGTTACACCTTGGGTTGTTGTTAATCAGGCTGCTACTTGG","5.10","-6.26","41234","MKKTKFFLLGLAALAMTACNKDNEAEPVVETNATVSFIIKSGESRAVGDDLTDAKITKLTAMVYAGQVQEGIKTVEEDGGVLKVEGIPCKSGANRVLVVVANHNYELTGKSLNEVEALTTSLTAENQNAKNLIMTGKSAAFTIKPGSNHYGYPGGTASDNLVSAGTPLAVTRVHAGISFAGVEVNMATQYQNYYSFKPADAKIAALVAKKDSKIFGNSLVSNTNAYLYGVQTPAGLYTPDAAGETYELEASLNTNYAVGAGFYVLESKYDASNELRPTILCIYGKLLDKDGNPLTEPALTDAINAGFCDGDGTTYYPVLVNYDGNGYIYSGAITQGQNKIVRNNHYKISLNITGPGTNTPENPQPVQANLNVTCQVTPWVVVNQAATW","2237839 2239002","From Genbank: [gi:38605635]Fimbrillin is the structural subunit of the fimbriae,that are filamentous appendages on the cell surface. Fimbriae of P.gingivalis are recognized as a major virulence factor as they mediate cell adhesion and play an important role in invasion of periodontal tissues. Six genotypes have been recognized (Missailidis et al., 2004); the encosed sequence appears to best represent the type V precursor.TIGR ID: PG2132","major fimbrillin A","Extracellular, Outer membrane","This sequence corresponds to gi:34398027 in Genbank.","
InterPro
IPR008110
Family
Porphyromonas gingivalis fimbrillin protein
PD008717\"[41-388]TFIMA_PORGI_P59914;
PR01737\"[64-80]T\"[119-135]T\"[276-292]T\"[314-330]T\"[341-356]T\"[365-379]TFIMBRILLIN
PF06321\"[37-388]TP_gingi_FimA
noIPR
unintegrated
unintegrated
PS51257\"[1-19]TPROKAR_LIPOPROTEIN
signalp\"[1-19]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 1-36 are 91% similar to a (FIMBRIAL PROTEIN PRECURSOR FIMBRILIN) protein domain (PD133381) which is seen in FMA_PORGI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Tue Jul 12 13:45:42 2005","Thu Jun 7 13:54:42 MDT 2001","Thu Mar 17 13:21:43 2005","Wed Jan 10 15:53:16 2001","","Wed Feb 28 19:01:52 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Feb 28 19:01:52 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 37 to 388 (E-value = 5.9e-274) place PG1865 in the P_gingi_FimA family which is described as Porphyromonas gingivalis major fimbrial subunit protein (FimA) (PF06321)","Fri May 18 16:43:52 MDT 2001","34541709","","See Fimbrillins
Miura M, Hamachi T, Fujise O, Maeda K.The prevalence and pathogenic differences of Porphyromonas gingivalis fimA genotypes in patients with aggressive periodontitis.J Periodontal Res. 2005 Apr;40(2):147-52.PMID: 15733149Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293Nishikawa K, Yoshimura F, Duncan MJ.A regulation cascade controls expression of Porphyromonas gingivalis fimbriae via the FimR response regulator.Mol Microbiol. 2004 Oct;54(2):546-60.PMID: 15469523Missailidis CG, Umeda JE, Ota-Tsuzuki C, Anzai D, Mayer MP.Distribution of fimA genotypes of Porphyromonas gingivalis in subjects with various periodontal conditions.Oral Microbiol Immunol. 2004 Aug;19(4):224-9.PMID: 15209991Xie H, Kozlova N, Lamont RJ.Porphyromonas gingivalis genes involved in fimA regulation.Infect Immun. 2004 Feb;72(2):651-8.PMID: 14742505Lamont RJ, Jenkinson HF.Life below the gum line: pathogenic mechanisms of Porphyromonas gingivalis.Microbiol Mol Biol Rev. 1998 Dec;62(4):1244-63.PMID: 9841671","Wu H, Fives-Taylor PM.Molecular strategies for fimbrial expression and assembly.Crit Rev Oral Biol Med. 2001;12(2):101-15.PMID: 11345521Missailidis CG, Umeda JE, Ota-Tsuzuki C, Anzai D, Mayer MP.Distribution of fimA genotypes of Porphyromonas gingivalis in subjects with various periodontal conditions.Oral Microbiol Immunol. 2004 Aug;19(4):224-9.PMID: 15209991","Tue Jul 12 13:45:42 2005","Tue Jul 12 12:12:49 2005","1","","","PG2132" "PG1866","2239145","2240053","909","ATGAACGACGCTAAGAAATATATCGTATCGGTGCTGATCTTACTCGTGGCCGGAATGTTTGGCGGATGTATCAAAGAGGACTATTCCGATTGTCCCCGTCCGTTTCGCCTGACCGTCAGGGCTTGGGATGCCGATATGCAAGATATTACCGAAACCGGAGCCGTGCAGCGCGTCGTTATTTTCGTTTTCGACGAAACCGGCCGCCGCATCGACCGACTGATGATGGACGCCGCACAAGTGGCTGCACGCAAACCGATACCATTGGAATACGACGGCCCCACTACGGTGTCTTTCGTGGCATGGGCCAACCCCGACGATCACATGCTGGAAGAAACAGCCAATGTGCAAAACGTCAAAGACTTATTCTTCAGGCTTTCCTCTACCGACGGTATAGCCCAATCGCCCGGAGACCTTTTTTCCGGTGTACTGACCTGCCCAATAGAGTACGGCTCTATCGAACAGGGTACAGACCAAACTGTCGATATCTACCGCCGTACGGCACAGGTACATATCATCATACGCGGCTATCAAGAGTGGCTGGAAGCTAATGGCCCCAGACAACTGCCAGACTATGCCGACATCCTTTTGGGAGAAACTCCCGACACTTATACCGGCCTGGCCGAGCTCATCGGCAATGCCGTCCAATACCGTCCCGACGGACAGATACAAAACGGGGATTTCATTTCTCCCATCTTCAGAGTTTATCCCACACTTGATACTACTCCTCTGCATCTCAAACTCTATGCATACGGACAAGAATTGCTGAATATCAGCACAGGTTCGGATGGAGTACCATTCATACCCGTCATAGGCAAAATGCTCAATATCTACATAGACCTGCGTGGAGCAAACCTCAATGTACTCGTATCCGTCACCCCTTGGGACGTAGTGCAACAATATGCAGAATAC","4.30","-16.41","33826","MNDAKKYIVSVLILLVAGMFGGCIKEDYSDCPRPFRLTVRAWDADMQDITETGAVQRVVIFVFDETGRRIDRLMMDAAQVAARKPIPLEYDGPTTVSFVAWANPDDHMLEETANVQNVKDLFFRLSSTDGIAQSPGDLFSGVLTCPIEYGSIEQGTDQTVDIYRRTAQVHIIIRGYQEWLEANGPRQLPDYADILLGETPDTYTGLAELIGNAVQYRPDGQIQNGDFISPIFRVYPTLDTTPLHLKLYAYGQELLNISTGSDGVPFIPVIGKMLNIYIDLRGANLNVLVSVTPWDVVQQYAEY","2239144 2240052","99% identical to previously sequence P.gingivalis protein but only from 1-118. May be an incorrectly predicted ORF.TIGR ID: PG2133","hypothetical protein","Cytoplasm, Outer membrane","Residues 1-118 of PG1866 are 99% identical to previously sequenced P.gingivalis protein in genbank, BAA22415.No significant hits in gapped BLAST.","
InterPro
IPR014941
Family
Protein of unknown function DUF1812
PF08842\"[20-300]TDUF1812
noIPR
unintegrated
unintegrated
PS51257\"[1-23]TPROKAR_LIPOPROTEIN


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 1-118 are 99% similar to a (DNA FOR FIMBRILIN, ORF1-4,) protein domain (PD075960) which is seen in O32387_PORGI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Wed Jan 10 16:10:03 2001","Wed Jan 10 16:10:03 2001","Wed Jan 10 16:10:03 2001","Wed Jan 10 16:10:03 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541710","","Watanabe,K., Onoe,T., Ozeki,M., Shimizu,Y., Sakayori,T., Nakamura,H. and Yoshimura,F., Sequence and product analyses of the four genes downstream from the fimbrilin gene (fimA) of the oral anaerobe Porphyromonas gingivalis, Microbiol. Immunol. 40 (10), 725-734 (1996), PubMed: 8981345.","","Wed Jan 10 16:10:03 2001","","1","","","PG2133" "PG1867","2240070","2241440","1371","ATGAAAATGAAATATTTCCATCATCCTTCGGGACTACTTCCACGCCTTCTCCTGTTATTGCTTTTAACGATGGGGGCGGTAGCATGTACCAAGGAAGATAATCCCGATCAGCCCACCTCGGACGAAGTGGCAACAGTAAAGATGTCGCTTGACGATGTCGAAATGCGAGGCGGAGACCTCTACAGTGGAGAAAATCTGATCAAGAAAGTGCGCATATTCGTCTTTCGTGAAGGGCTAAACGGCCTTTGGGTTCTCGACAAGCAAAAACTATTTGCTTCGGGGCAGTCCGATTTCCAAAATCCTTTTACGATCAGTGCTCACGCCGGTCCTCGCCAGATATACGTGATCGCCAATGAACCCGATGCCCTTACGACAAAGCTGGATAAAATCCTTTTCAAGAAAGAACTTGAGGATATGCAAGCTCCTGATGTGAACGAGCCGATAGCCCAACCATTCACCATGACGGGAATGGCTGAGGCGACTCTTAATCCGCAAGGCACTGTGCTAGTACGCATCAGCCTCAATCGTATTGCCGCCAAGATCACACTGGACATCAAGCAAGTTACTCCGGGCAGCGATGTAATCAAGATTACTAAGGTGCAGATCCTTCGCAACGCCAAGAACTCGCGCCTGCTCGAAGGCACAAACAAACCTACAGGATATTGGAATTGGGAGAATGCCTGCGATCTTCCGTTGACGAACAACGGCAACGCCCAGAGCATCATTCCGGCATCCTCTCCTCTCTACGTATATGAGAACATAGGATCAGGATCAGACTCTTCCGGACGCGCTACGCAGCTTGTGGTGGAAGCTCTCTACAATGGTATTAAGACCCGCTACTATGCCTACGTGAACGATAAGACCACTATGATGGAGGAGGACGATCATCACTACTCCATTCACCGCAACCATCATTACAAACTGGACGGGACGATCACAAAAATGGGCGAATTCAGTAGCTTGCTTCTCACGACCACCGTCCTTCCGTGGACAGTAGAGGAGTACCAATATGATTTTTTGAAGCCGCAACTTGTTTCCATTGTTCCCACGAATGCTTATGCCACACCTCAGTATATAATGCCCCCTAACACTGACATAGAGTTCAGAGTTAAAATTAAAGGGGGGACAGGCAACCCTTTTGCGAGATGGATCGCCACGCTGGATAATGGTTTGGACTTTGGTTTTGAAGGAACCCATGAAGGCCCTGCTGATGGTCTGACGGAGCAAACAGTAAAGGTAAAAGCTCTCAAGCCCTTCTTCAATAAAGAGCGCCGCACGGCTCTTTCTTTTAGCATTGATGGAAAAAAAGTAATCCTCAATACCGGGGCAGGACAGCAAATTACCGAGATCATTATAATACAGAAAGCTATT","6.80","-0.90","50923","MKMKYFHHPSGLLPRLLLLLLLTMGAVACTKEDNPDQPTSDEVATVKMSLDDVEMRGGDLYSGENLIKKVRIFVFREGLNGLWVLDKQKLFASGQSDFQNPFTISAHAGPRQIYVIANEPDALTTKLDKILFKKELEDMQAPDVNEPIAQPFTMTGMAEATLNPQGTVLVRISLNRIAAKITLDIKQVTPGSDVIKITKVQILRNAKNSRLLEGTNKPTGYWNWENACDLPLTNNGNAQSIIPASSPLYVYENIGSGSDSSGRATQLVVEALYNGIKTRYYAYVNDKTTMMEEDDHHYSIHRNHHYKLDGTITKMGEFSSLLLTTTVLPWTVEEYQYDFLKPQLVSIVPTNAYATPQYIMPPNTDIEFRVKIKGGTGNPFARWIATLDNGLDFGFEGTHEGPADGLTEQTVKVKALKPFFNKERRTALSFSIDGKKVILNTGAGQQITEIIIIQKAI","2240042 2241439","TIGR ID: PG2134","hypothetical protein","Outer membrane, Cytoplasm","PG1867 is essentially identical (80%) to a previously sequencedP.gingivalis protein in GenBank, BAA22416.No significant hits in gapped BLAST. ","
noIPR
unintegrated
unintegrated
PS51257\"[1-29]TPROKAR_LIPOPROTEIN


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 13:06:21 MDT 2001","","Thu Jun 14 13:06:21 MDT 2001","Thu Jun 14 13:06:21 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:06:21 MDT 2001","Thu Jun 14 13:06:21 MDT 2001","","","Wed Jan 10 16:15:34 2001","Mon Jun 25 08:50:21 MDT 2001","Wed Jan 10 16:15:34 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 16-185 are 24% similar to PG0166, residues 13-118 are 31% similar to PG1869.","Mon Jun 25 08:50:21 MDT 2001","Thu Jun 14 13:06:21 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jun 25 08:50:21 MDT 2001","34541711","","Watanabe,K., Onoe,T., Ozeki,M., Shimizu,Y., Sakayori,T., Nakamura,H. and Yoshimura,F., Sequence and product analyses of the four genes downstream from the fimbrilin gene (fimA) of the oral anaerobe Porphyromonas gingivalis, Microbiol. Immunol. 40 (10), 725-734 (1996), PubMed: 8981345.","","Wed Jan 10 16:15:34 2001","","1","","","PG2134" "PG1868","2241464","2243473","2010","ATGAAATATCTTATCAGACTCTTCTTATCATTGATGTTACTCTCTCTCTGGACGGGCTGTACACACGAGGAGCTCTCTATTTGCGATGGCGAGAATACGCTTGTTTTACGCGTAGAGACCGGTAAAGCCCCAAATGCTCGTGCCACAGAACCCGGTCAGGGCATATACAATGAGAATAAAGTAGGCTCCATTTCTGTGCTCTTCTATTTAGAGGGACAACTTCGTTGGCAGGTGAAGTCTACAGACTATCAAATCCATGAAGGGGCCTATATCATTCCGGTCAAAGAGCAAATGCGACCACTATTCAATGGCAACAACAACTTCAGCATCTATGTAGTGGCCAATCTCGATTTCAATGCTCCGGCCACAGAAGCTGCGCTTTCTCAATTTGTGGTAGAGAAATCTATTGAAGTCTCTTCTACGACAGCCCCTGCCGATTTCGTAATGCTTGCTCATGGCAATAAGCAGATCAATATGGCTACGACAGAAGGGAAACTGTTGGGGGATTATAAACTCAAACGAGTGGCAGCAAAGATTCGCATGATAAAACCCACCATCAATGTGCAAGGATATGAAGTGGTCGGAAATATACAGGCAAAGTTTCGCAATTCGGTAACGAAGGGGTTCCTTACCACAGAAGCTCAAGAGATCCCAGCTGCTGCATCCTATAAGACATCGGAATATCTTGATATTGCAGAGTCGGCACCTGCCAATTCTATCCATTTCTATTCTTACTATAACAAATGGACACTCTCCACACCGGAGAAGCGACCGGAATTCTTCATCATGGTCAAATTCAAAAAGACAGGACAGCCGGACAACACAGCCAAACCGTACTACTACAGAGTGCCCCTCGAATCTCAGGACAATCAGGTCAAGAGCAATGTCCTCTATAATCTGAATGTGAAAATCGAAATCTTGGGTTCTTTACAAGAGCCGGAAGCTGTTTCTGTAAACGGCACACTCGCAATAGAAGAATGGATTCTCCATCAGGATGCATTCAATCTGCCTGCCACCAATTACTTGATAGTGGAACAGCACGAAATCTTCATGAATAACGTGAACACATACTCGGTGAAATATCAAACTTCGCAGAAACCAATCAGCATTAGCATACAGTCAGTTACCTTTAGCTACGTCTCTTCTGATGGCACTCAGCACAATGATCTTGTAGCAAGTAGTAGCGACCAGTATCCTACGATTACAAGCGATAATACAAGCATCATAATCACTTCCAAGATACCGGTTAATAACGTACCAAAGAAGATCGTTTTTGAGGTAACTAATGGGGTAGCCGGTTTGAAAGAGACTGTCACAGTACTCCAATATCCTGCACAATTTATTGTCAATACACTTGGCACAGCATCGGCATGGAGACCAGACGGATCTTTGGCTCCGGGGCTTAACAATAAAGCGATTTACCATGTCGTAGTACTGGTTCCACCCGAGAATTTATTTGAAGATGGGACACAGACAATCATCGGTTATCCCCCCACTGAAACAATTTCTTTTCATAAGAAAGAGAACAATACCTATCCGATAGTATGGTCTGACACAAATACGACAAAACAGGACCTTGAGACATCAAGAATGATTTCACCTTCCTTTGAGTTAGCCTCCCAACTTGGGGCTACTCTCCCGATGCCCTATCTCGAGTATTGGCCAGGGACATCATATCTCCTTGACTATTCGGGAAACTATAATAATAAGAGATACGCCTTGTTTAATTGCGCTTTTTACTGGGAGAAAAGAAAAGTTAATAACGAAGAAATTAAATTCGATGACTGGCGTTTGCCGACAGAAGCTGAGATCAAATTGATAGATAAGCTGCAACATAATGAGCAGAGTGCTGTCCAAGCTATCATGACAGGGAATTATTATTGGGATAGTTACTCTGCAAATGGGTCTTATAAAATGCAAGGAGGAGGGGGCCAAGGAAATTCCTCCAAAGCCTATGTTCGTTGCGTGCGGGATGTGAAAAAGCCGATTCGTGACAAGAAGTCAGGTAAG","6.90","-0.73","75293","MKYLIRLFLSLMLLSLWTGCTHEELSICDGENTLVLRVETGKAPNARATEPGQGIYNENKVGSISVLFYLEGQLRWQVKSTDYQIHEGAYIIPVKEQMRPLFNGNNNFSIYVVANLDFNAPATEAALSQFVVEKSIEVSSTTAPADFVMLAHGNKQINMATTEGKLLGDYKLKRVAAKIRMIKPTINVQGYEVVGNIQAKFRNSVTKGFLTTEAQEIPAAASYKTSEYLDIAESAPANSIHFYSYYNKWTLSTPEKRPEFFIMVKFKKTGQPDNTAKPYYYRVPLESQDNQVKSNVLYNLNVKIEILGSLQEPEAVSVNGTLAIEEWILHQDAFNLPATNYLIVEQHEIFMNNVNTYSVKYQTSQKPISISIQSVTFSYVSSDGTQHNDLVASSSDQYPTITSDNTSIIITSKIPVNNVPKKIVFEVTNGVAGLKETVTVLQYPAQFIVNTLGTASAWRPDGSLAPGLNNKAIYHVVVLVPPENLFEDGTQTIIGYPPTETISFHKKENNTYPIVWSDTNTTKQDLETSRMISPSFELASQLGATLPMPYLEYWPGTSYLLDYSGNYNNKRYALFNCAFYWEKRKVNNEEIKFDDWRLPTEAEIKLIDKLQHNEQSAVQAIMTGNYYWDSYSANGSYKMQGGGGQGNSSKAYVRCVRDVKKPIRDKKSGK","2241463 2243472","TIGR ID: PG2135","hypothetical protein","Outer membrane, Extracellular","PG1868 is essentially identical (42%) to a previously sequencedP.gingivalis protein in GenBank, BAA22417.No significant hits in gapped BLAST. ","
noIPR
unintegrated
unintegrated
PS51257\"[1-20]TPROKAR_LIPOPROTEIN


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 19-670 are 42% similar to a (DNA FOR FIMBRILIN, ORF1-4,) protein domain (PD146809) which is seen in O32389_PORGI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Jan 10 16:31:07 2001","Wed Jan 10 16:31:07 2001","Wed Jan 10 16:31:07 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541712","","Watanabe,K., Onoe,T., Ozeki,M., Shimizu,Y., Sakayori,T., Nakamura,H. and Yoshimura,F., Sequence and product analyses of the four genes downstream from the fimbrilin gene (fimA) of the oral anaerobe Porphyromonas gingivalis, Microbiol. Immunol. 40 (10), 725-734 (1996), PubMed: 8981345.","","Wed Jan 10 16:31:07 2001","","1","","","PG2135" "PG1869","2243503","2245164","1662","ATGAAAAAATTGCTATATATACTGTTGCTACCCCTGCTAATACTTTCGTGTGTCAAGGAACAGAATATGTCTGTTCCGGGGGACGAGGCAGTAGTGCGTTTTAGTTTGGATCAATCCGATTTCAGTTCTTTGCGCAGCAGAAGCTATGAAGATCTGATACAGACTTTAGAGCTATGGGTTTTCGATGAGCAAGGTCTTTTCGTGGAAAAAGCCAAAGAAGTGCAGTACAATCCCTTCGCTAATTCTTTTACGGCGAAGGTTTCGAAATCGATGTCGCCTCGTATCATTCATTTCATTGTGAATTATACGTTGGCCAACGAGGCAAACTGGGTCGGACACGATGAGAAAGAAATGGTACCGTCATTGTCAGTCGGCACACAACCTACTTACTTACATATGTGGGCTCGAAAGAGATACGAGAAAATTGAGGGCAATGACAATTTGCAAACGATAACAGTGCGTCGCAATATGGCCAAATTCAGCTTGGCCATGAATACCGCCAAGCTGACAGAGGTGGAGTACTCTCTTTATAACACCTTTGACAAAGGCACCTTGGCTCCATTCGACCCCTCCGAAACGAATCCAGACTTAGCATTCAAAAAAGATTTTGTGACCGAGCCGGCCGGAGCTGATTTTGATAATCAGAAAGGGTTCAAACCTGTCGGTCCTGAGAATTTCTTTTATGGTTTCGAGCGTAAAAATTCAGTTATTGCTGCGGGAGAACAAATCTCTTGCCTGATCATAAAAGGCAAATATCAAGGTAGTAATGCCTTTTCTTACTACAAGATAGACTTTGTCCATCAGGACGACAAGACCAAGCGTTACGACATCATACGCAATCACTTCTATAAGGTGACGATCAATGATGTATTTAAAGCCGGATTTCCCACAATCGAGGCGGCTCTTTCAGGTGCTGCTGCGAACAACATAGCTCTCTCCGAGGAGCTGCAAATGTACCCGTCTTTCTCTGACGGGAAAGGTAAGATCGAAGTGGATCATACTTACTTGGCCTTTACCGATGGGCAGACAACGGGCACAATCAAAGCGGCTTATTATCCGAATGTTGGCAACGTAACACAGCAGAACAATCTGATCACCGTCACATATAGCGGTGATGCAGTAACCGGTGCTACTAACAACAACGGTACGATTTCGTTGTCATTGGCTGCAACACCCGGTTCAGGCTCATGTACGTCAGACATCATTGTGGGAGCACAAGATAATCCTGACCTCAAACGTCTGGTGCGTGTGGTAGTGAGGAAGCCCTACGTTTACAATCCATTTGCAGTCCGCACACAAAAGGGTGCAGGAGATGCATTCACAGAATACACAGCCACTTCGAACGCAGTCTCTTGTCAGGTACATAAGACGCAGGATAAAGCACTGAACATCGTCATGAATATCCCGGCCGATTTCAATCCGGCTTTGCTTCCTACTACTTTCCGAATCAAGACGAACAACTTTTATCCCTCCGGTGGTCAGGGGCTTATCTTTGGCAACGAGGCCGAAAAGCCTTTTTACGACTATATCCTGACGGCAATCCCGACCGATCGCAAGGTGGAACTGATGTTCAAATCGAATAAATCTGCTTCGGCTGAGACGATCACAGTTTCTTCTCGTTCAAAATACTTCCACACACAGACGATAACGGTGGCGAATCCG","7.20","0.77","61675","MKKLLYILLLPLLILSCVKEQNMSVPGDEAVVRFSLDQSDFSSLRSRSYEDLIQTLELWVFDEQGLFVEKAKEVQYNPFANSFTAKVSKSMSPRIIHFIVNYTLANEANWVGHDEKEMVPSLSVGTQPTYLHMWARKRYEKIEGNDNLQTITVRRNMAKFSLAMNTAKLTEVEYSLYNTFDKGTLAPFDPSETNPDLAFKKDFVTEPAGADFDNQKGFKPVGPENFFYGFERKNSVIAAGEQISCLIIKGKYQGSNAFSYYKIDFVHQDDKTKRYDIIRNHFYKVTINDVFKAGFPTIEAALSGAAANNIALSEELQMYPSFSDGKGKIEVDHTYLAFTDGQTTGTIKAAYYPNVGNVTQQNNLITVTYSGDAVTGATNNNGTISLSLAATPGSGSCTSDIIVGAQDNPDLKRLVRVVVRKPYVYNPFAVRTQKGAGDAFTEYTATSNAVSCQVHKTQDKALNIVMNIPADFNPALLPTTFRIKTNNFYPSGGQGLIFGNEAEKPFYDYILTAIPTDRKVELMFKSNKSASAETITVSSRSKYFHTQTITVANP","2243502 2245163","May be an incorrectly predicted ORF. 40% similar to previously sequence P.gingivalis protein but only to residues 16-155. (genbank:BAA22418).TIGR ID: PG2136","hypothetical protein","Outer membrane, Periplasm","This sequence corresponds to gi:34398031 in Genbank.","
noIPR
unintegrated
unintegrated
PS51257\"[1-17]TPROKAR_LIPOPROTEIN


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 16-155 are 40% similar to a (DNA FOR FIMBRILIN, ORF1-4,) protein domain (PD097671) which is seen in O32390_PORGI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Wed Mar 9 15:47:59 2005","Wed Jan 10 16:34:51 2001","Wed Mar 9 15:47:59 2005","Wed Jan 10 16:34:51 2001","","Wed Mar 9 15:47:59 2005","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 9 15:47:59 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541713","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Wed Mar 9 15:47:59 2005","","1","","","PG2136" "PG1870","2245233","2245472","240","TTGTTTTTTTGCGGGGGGGGGTATTTGAAAGATATTCATTCTGCAGGAGAGAGGGGTGTGCAGCCGGAGCAGGGGGTGAAAATCACGAGCGTGAAAAGGAGAAAAAGCGGAACCGCTTTTCTGCAAAATACGCGCGACTTTTTTTTCGTTGTGGCGCGAGATTTTTTTCATTCTCGCGCCAAAAGAAAAATTTTCTCGCGCCACGCTTTCAGGCTTGGGAAACCAAAAAGAAATCGGCTG","12.10","14.65","9255","LFFCGGGYLKDIHSAGERGVQPEQGVKITSVKRRKSGTAFLQNTRDFFFVVARDFFHSRAKRKIFSRHAFRLGKPKRNRL","","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm, Extracellular","No hits in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","Wed Aug 15 17:01:54 2001","Wed Aug 15 17:01:54 2001","Wed Aug 15 17:01:54 2001","Wed Aug 15 17:01:54 2001","Wed Aug 15 17:05:23 2001","Wed Aug 15 17:01:54 2001","Wed Aug 15 17:01:54 2001","Wed Aug 15 17:05:23 2001","Wed Aug 15 17:05:23 2001","Wed Aug 15 17:01:54 2001","Wed Aug 15 17:01:54 2001","Wed Aug 15 17:01:54 2001","Wed Aug 15 17:01:54 2001","Wed Aug 15 17:01:54 2001","Wed Aug 15 17:05:23 2001","Wed Aug 15 17:05:23 2001","yes","Fri Feb 20 15:41:32 MST 1998","No parlogs found in P.gingivalis.","Wed Aug 15 17:05:23 2001","Wed Aug 15 17:05:23 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Aug 15 17:05:23 2001","","","","","","","1","Wed Aug 15 17:01:54 2001","","" "PG1870.1","2245241","2245498","258","TTGCGGGGGGGGGTATTTGAAAGATATTCATTCTGCAGGAGAGAGGGGTGTGCAGCCGGAGCAGGGGGTGAAAATCACGAGCGTGAAAAGGAGAAAAAGCGGAACCGCTTTTCTGCAAAATACGCGCGACTTTTTTTTCGTTGTGGCGCGAGATTTTTTTCATTCTCGCGCCAAAAGAAAAATTTTCTCGCGCCACGCTTTCAGGCTTGGGAAACCAAAAAGAAATCGGCTGTAAATCAACACAAAGTCAAAACCTTA","","","10121","LRGGVFERYSFCRREGCAAGAGGENHEREKEKKRNRFSAKYARLFFRCGARFFSFSRQKKNFLAPRFQAWETKKKSAVNQHKVKTL","","TIGR ID: PG2137","hypothetical protein","Cytoplasm, Extracellular","No significant hits in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 5 10:25:06 MST 2001","","","","Mon Feb 5 10:25:06 MST 2001","","","","Mon Feb 5 10:25:06 MST 2001","Mon Feb 5 10:25:06 MST 2001","Mon Feb 5 10:25:06 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P.gingivalis.","Mon Feb 5 10:25:06 MST 2001","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","PG2137" "PG1871","2245791","2246267","477","TTGGATGATTCCTTTTTTGAGCAGTCCGGAAGTTACGATATTTTAGGAGGGACATTGGCTGCAAAGGTCGAAGTGGAACGCAATGGCGATGTCTTTAATTTTTGCATTGCGCTTGACGGAACAGTCAAGACTGCTTGCGACCGATGTCTCGATGAGGTGGAAATACTGGTAAAAGAGGAAAATAAATTGGTGGTTCGTTTCGGCGATTCTTATCAAGAATTGAGCGACGATCTGCTTGTTGTCCCTCTGTCGGAAGGCACATTGGACCTAAGTTCGCTCCTTTATGAGTATTCCGAATTGGCTATCCCGATGCAGCGTATGCATTCGGATGGAGAGTGCGACCCCGAGATGATGAATCGAATGTCCGATCTGCTGGCGATAGATGCCGATGAAGCAACAGAAGAATCCGGTATGACCGCTCACGATTCGAGGTGGGATTCTCTTGGAAAACTATTGGAACAAAAAGAACAATTTAAA","3.90","-22.69","17786","LDDSFFEQSGSYDILGGTLAAKVEVERNGDVFNFCIALDGTVKTACDRCLDEVEILVKEENKLVVRFGDSYQELSDDLLVVPLSEGTLDLSSLLYEYSELAIPMQRMHSDGECDPEMMNRMSDLLAIDADEATEESGMTAHDSRWDSLGKLLEQKEQFK","2245718 2246266","TIGR ID: PG2139","hypothetical protein","Cytoplasm","No significant hits in gapped BLAST.","
InterPro
IPR003772
Family
Protein of unknown function DUF177
PF02620\"[38-113]TDUF177


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 13:06:58 MDT 2001","","Thu Jun 14 13:06:58 MDT 2001","Thu Jun 14 13:06:58 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:06:58 MDT 2001","Thu Jun 14 13:06:58 MDT 2001","","","Mon Feb 5 10:33:44 MST 2001","Mon Feb 5 10:33:44 MST 2001","Mon Feb 5 10:33:44 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Jun 14 13:06:58 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jun 25 08:46:46 MDT 2001","34541714","","","","","","1","","","PG2139" "PG1871.1","2246277","2246459","183","ATGGCACATCCTAAAAGAAGACAGTCCAAAACGAGAACCGCCAAGCGGAGAACTCATGACAAAGCCGTTATGCCGACTTTGGCCAAGTGTCCTAATTGTGGAGCATGGCACATCTATCACACAGTATGTGGTGATTGTGGCTACTACCGCGGTAAGTTGGCAATCGAAAAAGAAGTGGCAGTG","0.00","0.00","6924","MAHPKRRQSKTRTAKRRTHDKAVMPTLAKCPNCGAWHIYHTVCGDCGYYRGKLAIEKEVAV","","TIGR ID: 2140","50S ribosomal protein L32","Cytoplasm, Periplasm","Numerous hits using gapped BLAST to 50S ribosomal protein L32, including residues 1-57 are 50% similar to gi|3123178|sp|P07840 in Bacillus stearothermophilus, residues 1-52 are 55% similar to gi|14246898|dbj|BAB57290.1| (AP003361) in Staphylococcus aureus and residues 1-57 are 50% similar to gi|10175204|dbj|BAB06302.1| (AP001516) in Bacillus halodurans.","
InterPro
IPR002677
Family
Ribosomal L32p protein
PF01783\"[2-57]TRibosomal_L32p
TIGR01031\"[2-56]TrpmF_bact


","BeTs to 11 clades of COG0333 COG name: Ribosomal protein L32Functional Class: JThe phylogenetic pattern of COG0593 is ----yqvceb-hujgpolinx Number of proteins in this genome belonging to this COG is 1","","","Thu Jul 5 17:38:45 MDT 2001","Thu Jul 5 17:38:45 MDT 2001","Thu Jul 5 17:38:45 MDT 2001","Thu Jul 5 17:38:45 MDT 2001","Thu Jul 5 17:39:11 MDT 2001","Thu Jul 5 17:38:45 MDT 2001","Thu Jul 5 17:38:45 MDT 2001","Thu Jul 5 17:39:11 MDT 2001","Thu Jul 5 17:39:11 MDT 2001","Thu Jul 5 17:38:45 MDT 2001","Thu Jul 5 17:38:45 MDT 2001","Thu Jul 5 17:49:47 MDT 2001","Thu Jul 5 17:48:39 MDT 2001","Thu Jul 5 17:42:29 MDT 2001","Thu Jul 5 17:38:45 MDT 2001","Thu Jul 5 17:38:45 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Thu Jul 5 17:42:29 MDT 2001","Thu Jul 5 17:38:45 MDT 2001","-58% similar to PDB:2HGJ Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons. This entry 2HGJ contains 50S ribosomal subunit. The 30S ribosomal subunit can be found in PDB entry 2HGI. (E_value = 7.8E_10);-58% similar to PDB:2HGQ Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex. This entry 2HGQ contains 50S ribosomal subunit. The 30S ribosomal subunit can be found in PDB entry 2HGP. (E_value = 7.8E_10);-58% similar to PDB:2HGU 70S T.Th. ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A. This entry 2HGU contains 50S ribosomal subunit. The 30S ribosomal subunit can be found in PDB entry 2HGR. (E_value = 7.8E_10);-58% similar to PDB:2J01 STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME COMPLEXED WITH MRNA, TRNA AND PAROMOMYCIN (PART 2 OF 4). THIS FILE CONTAINS THE 50S SUBUNIT FROM MOLECULE I. (E_value = 7.8E_10);-58% similar to PDB:2J03 STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME COMPLEXED WITH MRNA, TRNA AND PAROMOMYCIN (PART 4 OF 4). THIS FILE CONTAINS THE 50S SUBUNIT FROM MOLECULE II. (E_value = 7.8E_10);","","","Residues 2 to 57 (E-value = 4.5e-25) place PG1871.1 in the Ribosomal_L32p family which is described as Ribosomal L32p protein family (PF01783)","Thu Jul 5 17:38:45 MDT 2001","34541715","","","","","","1","Thu Jul 5 17:38:45 MDT 2001","","PG2140" "PG1872","2246642","2247646","1005","ATGAATAAAATAAACGCGGCTATAACAGCCGTTGGGGCCTATCTCCCTGAAGATGTTATTACCAATGACGATCTGGAAAAAATGGTTGATACCAATGACGAATGGATCATGACCCGTGTGGGGATCAAAGAGCGTCGGATCCTTCGAGACAAGAATAAAGGAGCTTCCTATTTGGCCATCCGTGCGGCACAAGACCTCTTCGAACGTCATGGTATCGATCCCAAGAGTATCGACGGCTTGATCCTTGCAACCAACTCGAGCGACTATCATTTCCCTTCCACGGCCAGCATCGTTGCTCATGAAATCGGTTGTGGCGACATCTTTTCTTTCGATATGCAGGCAGCCTGTCCCACGTTTATTTATGCCCTTGAAGTGGGAGCCAATTTTATCCGTTCGGGGCGTTATTCCAAGATCCTTGTGATCGCTACGGAGAAGATGACAGCTTTTACGGATTATACCGATCGAGCCACTTGTCCGCTATTCGGGGATGGCGCCGGTTGTGTTTTGCTCGAGGCTACCGAAGAAGAAGTAGGCGTTATGGATGCTGTGCTGCACTCCAATGGCATCGGCAAAGATCATTTGATCATGAAGGCCGGTGGATCGGCATGTCCTGCTACGCACGAAACGGTGGATAATCGTTGGCATTATGTGTATCAGGAAGGGCAGGTAGTCTTCAAACATGCTGTCGTAGATATGTGCAACAGCTGTGTGGAGATCATGGAGCGCAACAATCTTTCGCACGATGATATTACTTGGGTAGTACCTCATCAGGCCAACCTCCGAATCATCGATGCCGTTGCCCGACGTATGGGAGTCCCATATGAGAAAGTGATGGTCAATATCGAGCGTTATGGCAATACCAGTTCGGCTACAATCCCCATTTGTCTGTGGGAGTGGGAGCATAAATTGAAGAAAGGCGACGTTCTTGTCATGACGTCATTTGGTGCCGGCTTTACGTGGGGAGCTGTCTATGTCAAGTGGGCATACGATGGCAGCACGGTTCGT","5.40","-9.71","37186","MNKINAAITAVGAYLPEDVITNDDLEKMVDTNDEWIMTRVGIKERRILRDKNKGASYLAIRAAQDLFERHGIDPKSIDGLILATNSSDYHFPSTASIVAHEIGCGDIFSFDMQAACPTFIYALEVGANFIRSGRYSKILVIATEKMTAFTDYTDRATCPLFGDGAGCVLLEATEEEVGVMDAVLHSNGIGKDHLIMKAGGSACPATHETVDNRWHYVYQEGQVVFKHAVVDMCNSCVEIMERNNLSHDDITWVVPHQANLRIIDAVARRMGVPYEKVMVNIERYGNTSSATIPICLWEWEHKLKKGDVLVMTSFGAGFTWGAVYVKWAYDGSTVR","2246611 2247645","TIGR ID: PG2141","3-oxyacyl-[acyl-carrier protein] synthase (KAS III or FABH)","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 6-326 are 42% similar to gb|AAF38297.1| 3-oxoacyl-(acyl-carrier-protein) synthase III of Chlamydophila pneumoniae AR39, residues 8-327 are 41% similar to gb|AAC07144.1| 3-oxoacyl-[acyl-carrier-protein] synthase III of Aquifex aeolicus, and residues 4-327 are 39% similar to emb|CAB12990.1| similar to 3-oxoacyl- acyl-carrier protein synthase of Bacillus subtilis.This sequence is similar to BT3834.","
InterPro
IPR004655
Family
Beta-ketoacyl-acyl carrier protein synthase III (FabH)
TIGR00747\"[4-327]TfabH
InterPro
IPR013747
Domain
3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal
PF08541\"[240-327]TACP_syn_III_C
InterPro
IPR013751
Domain
3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
PF08545\"[110-188]TACP_syn_III
noIPR
unintegrated
unintegrated
G3DSA:3.40.47.10\"[6-176]T\"[195-330]TG3DSA:3.40.47.10
SSF53901\"[6-330]TSSF53901


","BeTs to 12 clades of COG0332COG name: 3-oxoacyl-[acyl-carrier-protein] synthase IIIFunctional Class: IThe phylogenetic pattern of COG0332 is Amtkyq-ceBRhuj--o-inxNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 14-326 are 39% similar to a (SYNTHASE BIOSYNTHESIS TRANSFERASE CHALCONE) protein domain (PD000453) which is seen in Q9ZCH1_RICPR.Residues 6-38 are 72% similar to a (SYNTHASE III PROTEIN) protein domain (PD003207) which is seen in Q9Z8P0_BBBBB.","","Thu Jun 14 13:07:06 MDT 2001","","Thu Jun 14 13:07:06 MDT 2001","Thu Jun 14 13:07:06 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:07:06 MDT 2001","Thu Jun 14 13:07:06 MDT 2001","","","Fri Mar 9 09:32:55 MST 2001","Fri Dec 26 14:02:19 2003","Mon Feb 5 11:16:46 MST 2001","","Mon Jun 25 08:42:09 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Mar 9 09:32:55 MST 2001","-60% similar to PDB:1UB7 The Crystal Analysis of Beta-Keroacyl-[Acyl Carrier Protein] Synthase III (FABH)From Thermus Thermophilus. (E_value = 9.3E_65);-57% similar to PDB:1ZOW Crystal Structure of S. aureus FabH, beta-ketoacyl carrier protein synthase III (E_value = 8.2E_61);-59% similar to PDB:1HN9 CRYSTAL STRUCTURE OF BETA-KETOACYL-ACP SYNTHASE III (E_value = 2.6E_59);-59% similar to PDB:1HND CRYSTAL STRUCTURE OF BETA-KETOACYL-ACP SYNTHASE III-COA COMPLEX (E_value = 2.6E_59);-59% similar to PDB:1HNH CRYSTAL STRUCTURE OF BETA-KETOACYL-ACP SYNTHASE III + DEGRADED FORM OF ACETYL-COA (E_value = 2.6E_59);","","","No significant hits to the Pfam 11.0 database","Mon Jun 25 08:42:09 MDT 2001","34541716","","","","","","1","","","PG2141" "PG1873","2247728","2248624","897","ATGCAAGTAGAGGAGTCCGGTCACCGTTCGGGATTTGTCAATATCGTTGGAAACCCCAACGTTGGGAAGAGTACACTGATAAATCTGCTTGTCGGTGAGCGGATTTCTATCATTACCTCCAAGGCGCAGACCACCAGACATAGAATCATGGGGATTGTGAATACGCCGGAGATGCAAATCGTTTATTCCGATACACCGGGAGTACTTCGTCCCAATTACAAACTCCAACAGGAAATGCGGGAGTTCTCCGAATCTGCTCTCGGGGATGCCGATGTGCTGGTTTATGTGACGGACGTGGTGGAGAAGGCTGATAAGAATGCTGATTTTCTCGCTCGCGTATCACGAATGGAATGCCCTGTACTTCTGGTCATCAACAAGATCGACCTGAGCAATCAGGAAGCATTGGAACAACTTGTGGAGGAGTGGCGCAATATATTGCCCAAAGCAGAAATTCACCCTCTTTCGGCCACGAACAACTTTAACGTCGGATTGCTGCAGAAGCGTATCGAAAGCCTCATTCCCCCATCTCCTCCTTACTTTGAAAAAGATGCACTCACGGACAAGCCGGCACGTTTTTTCGTTACGGAGATCATTCGTGAGAAGATACTGCTGTATTATCAAAAAGAAATTCCCTATGCGGCAGAAGTGGTCGTGGAGGAATTCAAGGAGGAGAAGACCATTATCCGTATCAAGTCGCTGATCATCGTGGAGCGTAATTCTCAAAAAGGAATAATCATCGGCCCTAAAGGGGCGGCCATCAAACGTGTAGGGTCAATGGCCCGGCGTGATTTGGAACGTTTCTTCGGAAAGAAAATTTTCTTGGAAATCTTTGTGAAGGTCGAAAAAGACTGGCGCAACAGGGATAATCTGCTTCGTGCCTTCGGCTATCAGTTGGAT","9.00","2.70","34187","MQVEESGHRSGFVNIVGNPNVGKSTLINLLVGERISIITSKAQTTRHRIMGIVNTPEMQIVYSDTPGVLRPNYKLQQEMREFSESALGDADVLVYVTDVVEKADKNADFLARVSRMECPVLLVINKIDLSNQEALEQLVEEWRNILPKAEIHPLSATNNFNVGLLQKRIESLIPPSPPYFEKDALTDKPARFFVTEIIREKILLYYQKEIPYAAEVVVEEFKEEKTIIRIKSLIIVERNSQKGIIIGPKGAAIKRVGSMARRDLERFFGKKIFLEIFVKVEKDWRNRDNLLRAFGYQLD","2247727 2248623","TIGR ID: PG2142","GTP-binding protein","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 9-299 are 36% similar to emb|CAB14471.1| GTP-binding protein of Bacillus subtilis, residues 4-299 are 38% similar to dbj|BAB05086.1| GTP-binding protein (Era/ThdF family) of Bacillus halodurans, residues 9-296 are 39% similar to sp|P37214|ERA_STRMU GTP-binding protein of Streptocuccus mutans.This sequence is similar to BT3835.","
InterPro
IPR002917
Domain
GTP-binding protein, HSR1-related
PF01926\"[11-128]TMMR_HSR1
InterPro
IPR004044
Domain
KH, type 2
PF07650\"[232-296]TKH_2
PS50823\"[202-282]TKH_TYPE_2
InterPro
IPR005225
Domain
Small GTP-binding protein domain
TIGR00231\"[8-171]Tsmall_GTP
InterPro
IPR005289
Domain
GTP-binding
TIGR00650\"[16-34]TMG442
InterPro
IPR005662
Family
GTP-binding protein Era
TIGR00436\"[11-279]Tera
InterPro
IPR006689
Family
ARF/SAR superfamily
PR00328\"[12-35]T\"[118-139]TSAR1GTPBP
InterPro
IPR009019
Domain
KH, prokaryotic type
G3DSA:3.30.300.20\"[189-296]TKH_prok
SSF54814\"[183-294]TKH_prok
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[3-184]TG3DSA:3.40.50.300
PTHR11649\"[5-289]TPTHR11649
PTHR11649:SF3\"[5-289]TPTHR11649:SF3
SSF52540\"[7-212]TSSF52540


","BeTs to 10 clades of COG1159COG name: Predicted GTPases, Era/HflX familyFunctional Class: RThe phylogenetic pattern of COG1159 is -m-k-QVCEBRhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB000765 (GTP1/OBG family) with a combined E-value of 1.2e-06. IPB000765B 5-56 IPB000765D 111-131","Residues 165-292 are 37% similar to a (GTP-BINDING PROTEIN ERA HOMOLOG PHOSPHORYLATION MEMBRANE) protein domain (PD004541) which is seen in ERA_COXBU.Residues 61-162 are 31% similar to a (PROTEIN GTP-BINDING ERA HOMOLOG OXIDATION HFLX PUTATIVE) protein domain (PD002733) which is seen in ERA_BACSU.Residues 15-129 are 30% similar to a (PROTEIN GTP-BINDING LIPOPROTEIN PRENYLATION RAS-RELATED) protein domain (PD000015) which is seen in P96128_TREPA.Residues 55-151 are 33% similar to a (PROTEIN GTP-BINDING FACTOR BIOSYNTHESIS ELONGATION TU) protein domain (PD000134) which is seen in ERA_STRMU.Residues 11-52 are 71% similar to a (PROTEIN GTP-BINDING INTERGENIC REGION) protein domain (PD000414) which is seen in ERA_ECOLI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon Feb 5 11:23:29 MST 2001","Fri Dec 26 14:04:01 2003","Mon Feb 5 11:23:29 MST 2001","Fri May 18 16:48:12 MDT 2001","Fri May 18 16:48:12 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 13-128 are 36% similar to residues 5-122 of PG1874, and residues 13-146 are 29% similar to residues 179-315 of PG1874, a probable GTP binding protein. PG1873 is also weakly similar to PG0786, a thiophene and furan oxidation protein (GTPase).","Tue Jun 5 14:38:23 MDT 2001","Fri May 18 16:48:12 MDT 2001","-53% similar to PDB:1EGA CRYSTAL STRUCTURE OF A WIDELY CONSERVED GTPASE ERA (E_value = 4.7E_41);-53% similar to PDB:1X1L Interaction of ERA,a GTPase protein, with the 3'minor domain of the 16S rRNA within the THERMUS THERMOPHILUS 30S subunit. (E_value = 4.7E_41);-55% similar to PDB:1WF3 Crystal structure of GTP-binding protein TT1341 from Thermus thermophilus HB8 (E_value = 1.4E_40);-53% similar to PDB:1X18 Contact sites of ERA GTPase on the THERMUS THERMOPHILUS 30S SUBUNIT (E_value = 1.5E_39);-52% similar to PDB:2HJG The crystal structure of the B. subtilis YphC GTPase in complex with GDP (E_value = 7.1E_13);","","","No significant hits to the Pfam 11.0 database","Fri May 18 16:48:12 MDT 2001","34541717","","","","","","1","","","PG2142" "PG1874","2248690","2250000","1311","ATGGGAGCATTAGTCGCCATCGTAGGCCGTCCGAATGTGGGCAAGAGCACATTGTTCAACCGCCTTACCCAAAGCCGGCAAGCCATCGTAGCCGAAGAGGCCGGTACTACGCGCGATAGGCAGTACGGCCGGGTGCATTGGAACGGTCGGGAGTTTTCCATCGTCGATACCGGAGGTTGGGTGGTCAATTCGGAAGATGTTTTCGAGGAAGAAATCAATAAGCAAGTGTATATTGCTGTCGAGGAAGCAGATGTAGTCCTCTTCGTCGCAGACAACCAGACCGGAGTGACTTCTCTTGACGAACAAGTCGCCGAGATACTGCGCCGAAGCAAAAAACCGGTTATAGTCGTAGCCAATAAGGTGGACAATACCGAAGATCATTATTCCGCTTCCGAATTCTATTCCTTTGGCTTGGGCGATCCTTACTGCATTGCAGCTGTCAGCGGTTCGGGAACAGGCGATTTGCTCGACAGGGTGATGGAGCTATTGCCGGCAGAGAACGGACAATCGGATTTGGACGAAACACTCCCTCGAATAGCCATCGTAGGCCGCCCCAATGCAGGGAAAAGCTCCTTGCTGAATGCCTTCATCGGAGAGGACAGGCATATCGTGACGGATATTGCAGGCACGACAAGGGACTCTATATACACTAAGTACAATAAGTTCGGACTCAATTTTTACCTTGTCGACACAGCCGGTATTCGCAAAAGGGGCAAAGTGAATGAAGACTTGGAATACTACTCCGTTATTCGATCCATTCGTGCCATCGAAAACTCCGACGTATGTGTGCTGATGCTGGATGCCACACGAGGTGTGGAGTCGCAGGATCTGAATATCTTTCAGATTATCCAGCGCAATAGCAAGGGACTGGTTGTATGTATCAACAAGTGGGACTTGGTGGAAGATAAAAGTCAAGCCGTCATCAAGACGTTTGAGAATGCCATCCGGCAGCGTTTTGCTCCATTTACGGATTTCCCTCTTCTCTTCATATCGGCTATGACCAAACAAAGGATTTTCAAAGTGTTGGAGACGGTCAATCAGGTCTATGCACACCGCTCGACTCGTATTCCCACACACAAGCTGAATGAAGTGATGCTACCCATTATCGAGGCTACGCCACCACCTGCTACCAAAGGTAAATACATCAAGATAAAATATGTGATGCAGCTTCCGACGGCAGTGCCTTCATTTGCCTTTTTTGCCAATCTGCCTCAGTGGGTGAAAGAGCCTTATAAGCGTTTTTTGGAGAATCAGATTCGTGCCCACTGGGATTTTTGCGGTACTCCCATCAACATTTTTATCCGCGAGAAG","6.80","-0.71","49228","MGALVAIVGRPNVGKSTLFNRLTQSRQAIVAEEAGTTRDRQYGRVHWNGREFSIVDTGGWVVNSEDVFEEEINKQVYIAVEEADVVLFVADNQTGVTSLDEQVAEILRRSKKPVIVVANKVDNTEDHYSASEFYSFGLGDPYCIAAVSGSGTGDLLDRVMELLPAENGQSDLDETLPRIAIVGRPNAGKSSLLNAFIGEDRHIVTDIAGTTRDSIYTKYNKFGLNFYLVDTAGIRKRGKVNEDLEYYSVIRSIRAIENSDVCVLMLDATRGVESQDLNIFQIIQRNSKGLVVCINKWDLVEDKSQAVIKTFENAIRQRFAPFTDFPLLFISAMTKQRIFKVLETVNQVYAHRSTRIPTHKLNEVMLPIIEATPPPATKGKYIKIKYVMQLPTAVPSFAFFANLPQWVKEPYKRFLENQIRAHWDFCGTPINIFIREK","2248689 2249999","TIGR ID: PG2143","probable GTP binding protein","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 5-437 are 44% similar to dbj|BAA88823.1| phosphoglycerate dehydrogenase of Streptococcus mutans, residues 4-437 are 43% similar to gb|AAC83966.1| GTP-binding protein Era of Bacillus subtilis, residues 4-437 are 42% similar to pir||S75645 probable GTP binding protein slr1974 of Synechocystis sp.strain PCC 6803.This sequence is similar to BT3836.","
InterPro
IPR001128
Family
Cytochrome P450
PS00086\"[136-145]FCYTOCHROME_P450
InterPro
IPR002917
Domain
GTP-binding protein, HSR1-related
PF01926\"[3-122]T\"[177-298]TMMR_HSR1
InterPro
IPR005225
Domain
Small GTP-binding protein domain
TIGR00231\"[1-161]T\"[174-347]Tsmall_GTP
InterPro
IPR005289
Domain
GTP-binding
TIGR00650\"[8-45]T\"[182-233]TMG442
InterPro
IPR006073
Domain
GTP1/OBG
PR00326\"[5-25]T\"[73-91]TGTP1OBG
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[4-170]T\"[176-357]TG3DSA:3.40.50.300
PTHR11649\"[4-437]TPTHR11649
PTHR11649:SF5\"[4-437]TPTHR11649:SF5
SSF52540\"[1-61]T\"[68-347]TSSF52540
SSF82653\"[355-437]TSSF82653


","BeTs to 12 clades of COG1160COG name: Predicted GTPasesFunctional Class: RThe phylogenetic pattern of COG1160 is ----yqvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** IPB000765 (GTP1/OBG family) with a combined E-value of 1.4e-07. IPB000765B 171-222 IPB000765D 281-301","Residues 226-337 are 45% similar to a (PROTEIN GTP-BINDING ERA HOMOLOG OXIDATION HFLX PUTATIVE) protein domain (PD002733) which is seen in YPHC_BACSU.Residues 369-435 are 43% similar to a (PROTEIN GTP-BINDING INTERGENIC REGION) protein domain (PD005185) which is seen in YPHC_BACSU.Residues 178-302 are 44% similar to a (PROTEIN GTP-BINDING LIPOPROTEIN PRENYLATION RAS-RELATED) protein domain (PD000015) which is seen in O51461_BORBU.Residues 178-216 are 69% similar to a (PROTEIN GTP-BINDING INTERGENIC REGION HOMOLOG ERA IRON) protein domain (PD000414) which is seen in YFGK_HAEIN.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon Feb 5 14:56:24 MST 2001","Fri Dec 26 14:05:55 2003","Mon Feb 5 13:59:11 MST 2001","Fri May 18 16:49:49 MDT 2001","Fri May 18 16:49:49 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 179-348 are 32% similar to residues 274-437 of PG0786 and residues 2-173 are 31% similar to residues 271-447 of PG0786, a thiophene and furan oxidation protein (GTPase). Also weakly similar to PG1873, GTP-binding protein, PG0930, probable ferrous iron transport protein B, and to PG1641, HFLX-related GTP-binding protein. Similar findings are noted for PG1873 and PG1641.","Tue Jun 5 14:41:19 MDT 2001","Fri May 18 16:49:49 MDT 2001","-64% similar to PDB:2HJG The crystal structure of the B. subtilis YphC GTPase in complex with GDP (E_value = 3.3E_100);-57% similar to PDB:1MKY Structural Analysis of the Domain Interactions in Der, a Switch Protein Containing Two GTPase Domains (E_value = 1.1E_71);-62% similar to PDB:2DYK Crystal structure of N-terminal GTP-binding domain of EngA from Thermus thermophilus HB8 (E_value = 1.2E_30);-58% similar to PDB:1XZP Structure of the GTP-binding protein TrmE from Thermotoga maritima (E_value = 2.1E_22);-58% similar to PDB:1XZQ Structure of the GTP-binding protein TrmE from Thermotoga maritima complexed with 5-formyl-THF (E_value = 2.1E_22);","","","Residues 72 to 326 (E-value = 4.4e-45) place PG1874 in the MMR_HSR1 family which is described as GTPase of unknown function (PF01926)Residues 174 to 360 (E-value = 1.8e-06) place PG1874 in the GTP_EFTU family which is described as Elongation factor Tu GTP binding domain (PF00009)","Fri Dec 26 14:05:35 2003","34541718","","","","","","1","","","PG2143" "PG1875","2250054","2253350","3297","ATGGAATGGAAACGTTTTAGATTTCTGAACAATGTCGTCGGTTGGGGCGTTTTTGCAGTTGCAGCTATCGTCTATCTGATGACAATCGAGCCTACAGCCAGCCTGTGGGACTGTGCCGAGTTCATAGTCTGCGTAAACAAGTTGGAGATCGGTCATCCGCCCGGAGCACCCTTCTTCATGCTCGTCTATAATATCATATCGCATTTCACGAGCGATCCGTCACAGGTGGCATGGCTTGCCAATGCTACCAGTGCACTGGCCAGTGCCTTTACCATCCTGTTTTTGTTTTGGACGATTACCCACCTTGTCCGCCGCGTACTTGTACCGACAGTACGCAATGTATCCGGATTGGAAGAGCCGTCAAGGAAAATATCCTTTCCACGAGTAATCACGATACTCGGCAGTGGAGTCGTTGGAGCCTTGGTCTATACGTTCAGCGATACGTTCTGGTTCAGTGCCGTCGAGGCCGAGGTATATGCATTGAGTTCTTTCTTCACGGCTGCCGTTTTCTGGCTGATGCTTAAGTGGGAGGAGCGTGCCGACAATGTACGCAGTGACCGCTGGCTCGTTTTGATCGCTTATCTTATGGGCCTCAGCATCGGAGTGCACCTGCTCAATCTCCTTTGCATCCCTGCCATGGCTTTGGTGTATTACTATCGCCGTGCTGTTAAACCCACAGGCAGGGGAGCTTTGTTGGCACTTTTGGCTTCCTTCGCCCTTATCGGGGTGATGATGTTCGGTGTGATACAGGGTATCCCTAAGGTTGCCGGCGTATTCGATGTCTTCGCTGTCAACACCCTTGGTTTGAGCTTCAATAACGGTTTGTATTTCTATTTCTTCCTGCTGGCTGCCATATTGATTTGGTCTGTGAGGGAGACTTATTCCGTACAGACCGACGGTGATAAGAAGGGTACAACCAAATCGATGCGCATGCGCTTTGCCGCGCTGCTGAGTGTTGTTCTGATGGGTATTCCTTTTATCGGCAATGGCATCCTTCTCGGCATAGTCCTTACACTGGCCGTAGCCTATTGGCTGTTTGCATCCAAGCGGTTGAATGTACGATTCTTGCATACGGCCTTGATGAGTATGCTGGTTATCCTCGTCGGCTTCTCCTCTTACGGTGTTATCCTCGTTCGTGCCGTTGCCAATCCGCCGATGAATGAGAATGCTCCGTCCAATGCCTTTTCGCTTCGTAGCTACCTTGCTCGCGAACAATACGGAAGTACCCCGTTGATCTACGGGCCTTCCTTTGCATCCCAACCTGTCGGTTTGAAGGATGGACAGGAAGTAACAGGGCCTTCGCCCAAGGTAAATCCTACAGATAAGGATCGTTACGAAACGCTCTATACACAACGCGAATACGATTATGGAGATGGTTCCATGATGCTTTTCCCACGTGTCTATTCCACTACCGATGGACATCCGCAAAGCTATAATATCTGGATGGGGCGATCCGAAACGGATACCAGTATGCCTACATTCGGAGAGAACCTGAAATTCTTCTTCAATTATCAGGTCAATTATATGTACTGGCGTTATTTCCTTTGGAATTTTTCCGGCCGTCAGAATGACCTGCAAGGCGACGGAGGACTATTGCGTGGCAATGCCGTGACGGGTATTCCCTTCATTGACAAGATTCTTATCGGTCCTACGGATGACATGCCGGACTTTATGACCAAGAATCGCGGACACAATGTGTACTACATGCTTCCGTTGCTTTTGGGGCTGATCGGTATTTCTTTCCAACTGATGCGCAAGGAGAAAGGTGCACAGAGCTTCTGGATCACTTTCTTCCTCTTCTTTATGACCGGTTTGGCCATCGTATTGTATCTCAATCAGACGCCCGGCCAACCGCGTGAGCGAGACTATGCCTATGCGGGATCCTTCTATGCTTTCTGTATCTGGATCGGTTTCGGTGTGGCAGGATTGGTCGATTTCTTGCGTCGAGCCAAACTCAGCCATACCACTGCGGCTATCGTAGCTACGGCTGCAGCAGTGCTTGTCCCTATCCAGATGGCCGGCCAGAACTGGGATGATCATGATCGCTCGGGACGCTATGTGGGACGCGATTTCGGTGTCAATTACTTGGAGAGCTGCGACCCCAATGCCGTTATTTTCACCTATGGCGATAACGATACCTTCCCCCTCTGGTATGCTCAGGAGGTAGAAGGCGTTCGTACCGATGTCCGTGTGAGCAATCTCAGTTACTTGGGAGCAGACTGGTATGTGCGCCAGATGAAGCAGCAAGCCTATCAGTCCGATCCGCTACCATTGAAGAATATGAATGAAGCCTTCATCAGCCGGAATGCCTTTGTTCGTGTCGATCCCAATTACTCTGCCAGAGATCCGGAGCTGAACCTCCATTCACTCCCGGGTAGCGGACTCACGGCCGATGGCAAGCCCATCATGATGCTGTCCGAAGCCATGAAAATAGCCGCTCGTCCGGTTCCTTATGGCAATGGTGTGATGCCGTCTGAGAACCTGTATCTGCCCGTAGATTCGCAAGCATTGGGGCAGGCGTTTGGCGATTCGGCTAAGGTGCATGTCCGTCAAACCATCGATCTGTCTTTGGCCGGTAAGGGCGTCCTCTCATTGGCCGACCTGAGCGTTCTCGATCTGATAGCCAATAACGAATGGAAGCGTCCTATCTATTGGGCTATTACGTCTCCGAGCAATTCTTTCTCCAACCTGCCGGACTACTTGCGTCAGACCGGTATGGCCAATCAGTTTGTGCCTTTTAAGGCGCGCCGCGTAGGCGATAACATCGATGTGGAAAAGACCTATACCAATGTGATGACCAAGTTCCGCTTCGGAGGGGCCAACAATCCCAAGGTGTACTTCGATGCAGATATTCGCAATTCCACCAATACCTATCGCGTAGCTGTGTTTTCTCCGTTGGCAAAGGCTCTGCTCGAAAGAGGCGATACCGTTCGTGCCCGTAAGGTGCTCACCAAATGCCTCCAAGAGATCAGTCCTGAAGCCGTGCCCTATGATTATCGCTCGCTGGTATTGGCACAAACCCTGTACGATGCAGATATGGTGGCCGACGCAGACCGGATAGTCAAGGCCGTGGCAGGCTCTTCGATGCGTACGCTTAACTGGTTCTTCCGCCTGTCGGAATCCAAATTCATGCAAATGCTTTCCGAAGGAGAGATCGACAGGGAGATGAATACGGTTGCTACGGCTCTTCGGCTGAGTACTGCTTATAATAGCAAAGTGTTGGATGAATATCTGCCCGTGTTCCAGAACTATTATAAGATGCTCTACACTGATGAGCAGGGTAATAGCAAACCGCAA","8.80","8.43","123344","MEWKRFRFLNNVVGWGVFAVAAIVYLMTIEPTASLWDCAEFIVCVNKLEIGHPPGAPFFMLVYNIISHFTSDPSQVAWLANATSALASAFTILFLFWTITHLVRRVLVPTVRNVSGLEEPSRKISFPRVITILGSGVVGALVYTFSDTFWFSAVEAEVYALSSFFTAAVFWLMLKWEERADNVRSDRWLVLIAYLMGLSIGVHLLNLLCIPAMALVYYYRRAVKPTGRGALLALLASFALIGVMMFGVIQGIPKVAGVFDVFAVNTLGLSFNNGLYFYFFLLAAILIWSVRETYSVQTDGDKKGTTKSMRMRFAALLSVVLMGIPFIGNGILLGIVLTLAVAYWLFASKRLNVRFLHTALMSMLVILVGFSSYGVILVRAVANPPMNENAPSNAFSLRSYLAREQYGSTPLIYGPSFASQPVGLKDGQEVTGPSPKVNPTDKDRYETLYTQREYDYGDGSMMLFPRVYSTTDGHPQSYNIWMGRSETDTSMPTFGENLKFFFNYQVNYMYWRYFLWNFSGRQNDLQGDGGLLRGNAVTGIPFIDKILIGPTDDMPDFMTKNRGHNVYYMLPLLLGLIGISFQLMRKEKGAQSFWITFFLFFMTGLAIVLYLNQTPGQPRERDYAYAGSFYAFCIWIGFGVAGLVDFLRRAKLSHTTAAIVATAAAVLVPIQMAGQNWDDHDRSGRYVGRDFGVNYLESCDPNAVIFTYGDNDTFPLWYAQEVEGVRTDVRVSNLSYLGADWYVRQMKQQAYQSDPLPLKNMNEAFISRNAFVRVDPNYSARDPELNLHSLPGSGLTADGKPIMMLSEAMKIAARPVPYGNGVMPSENLYLPVDSQALGQAFGDSAKVHVRQTIDLSLAGKGVLSLADLSVLDLIANNEWKRPIYWAITSPSNSFSNLPDYLRQTGMANQFVPFKARRVGDNIDVEKTYTNVMTKFRFGGANNPKVYFDADIRNSTNTYRVAVFSPLAKALLERGDTVRARKVLTKCLQEISPEAVPYDYRSLVLAQTLYDADMVADADRIVKAVAGSSMRTLNWFFRLSESKFMQMLSEGEIDREMNTVATALRLSTAYNSKVLDEYLPVFQNYYKMLYTDEQGNSKPQ","2250053 2253349","TIGR ID: PG2144","conserved hypothetical protein","Inner membrane, Cytoplasm","This sequence corresponds to gi:34398037 in Genbank.Its nearest neighbor in the NR database is gi:53711367 from Bacteroides fragilis YCH46.","
noIPR
unintegrated
unintegrated
signalp\"[1-34]?signal-peptide
tmhmm\"[9-29]?\"[77-97]?\"[132-152]?\"[158-173]?\"[188-210]?\"[229-249]?\"[251-271]?\"[277-292]?\"[313-347]?\"[357-377]?\"[500-520]?\"[564-584]?\"[593-613]?\"[627-647]?\"[657-677]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon Dec 22 10:11:06 2003","Wed Mar 9 15:52:14 2005","Mon Feb 5 14:59:10 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Mon Dec 22 10:11:06 2003","-39% similar to PDB:1PLG EVIDENCE FOR THE EXTENDED HELICAL NATURE OF POLYSACCHARIDE EPITOPES. THE 2.8 ANGSTROMS RESOLUTION STRUCTURE AND THERMODYNAMICS OF LIGAND BINDING OF AN ANTIGEN BINDING FRAGMENT SPECIFIC FOR ALPHA-(2->8)-POLYSIALIC ACID (E_value = );-43% similar to PDB:1NAK IGG1 FAB FRAGMENT (83.1) COMPLEX WITH 16-RESIDUE PEPTIDE (RESIDUES 304-321 OF HIV-1 GP120 (MN ISOLATE)) (E_value = );-39% similar to PDB:1UZ6 ANTI-LEWIS X FAB FRAGMENT UNCOMPLEXED (E_value = );-39% similar to PDB:1UZ8 ANTI-LEWIS X FAB FRAGMENT IN COMPLEX WITH LEWIS X (E_value = );-41% similar to PDB:2JEL JEL42 FAB/HPR COMPLEX (E_value = );","","","No significant hits to the Pfam 11.0 database","","34541719","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Wed Mar 9 15:52:14 2005","","1","","","PG2144" "PG1876","2253396","2253998","603","ATGTGGTACCGGGCTTTGTTCCCCGGTGCCACGTGGCGCATTCCTGCCAAAGAAGGAAAAAGCATCTATCTGACTTTCGATGACGGTCCCATACCGGAGATAACACCCTGGGTATTGGATACGCTCGATGAACTCGGGGTGAAGGCCACGTTCTTCTGTGTGGCGGATAATGTGCGTCGCTATCCCGATCTTTTTGCCGAGATACAGCGTCGTGGTCATCAGGTCGGCAATCACACTTTCCACCATCTGCAAGGGCTGAAAGTCCGTACACGTACCTATCTGAAAGATGTGGAAGAGGCTGACCGACTTATCAATTCTCGCTTCTTTCGACCGCCGCATGGCCATCTTCGCTTCATGCAGACCCTCCTGCTTAGCAATCACTACGACATTATTATGTGGGATGTGATCACGCGCGATTATAATGCTCGCCTTTCACCCGATACCGTCTTTGGTTCGGTGGTTCGCTATGCGCGCAACGGCTCCATTATTACCTTCCACGACTCCCTCAAAGCGGCTCCCAATATGCAGCAGGCCATGCCTCGCGCTGTGCGCTGGCTATTGGATGAAGGCTATACCTTCAAATGTCTGGGCGACCCGGCCGAC","8.70","3.82","23340","MWYRALFPGATWRIPAKEGKSIYLTFDDGPIPEITPWVLDTLDELGVKATFFCVADNVRRYPDLFAEIQRRGHQVGNHTFHHLQGLKVRTRTYLKDVEEADRLINSRFFRPPHGHLRFMQTLLLSNHYDIIMWDVITRDYNARLSPDTVFGSVVRYARNGSIITFHDSLKAAPNMQQAMPRAVRWLLDEGYTFKCLGDPAD","2253353 2253997 [Shorter 2436 182 99]","TIGR ID: PG2145","polysaccharide deacetylase (xylanase/chitin deacetylase)","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 17-193 are 35% similar to emb|CAB96552.1| peptidoglycan GlcNAc deacetylase of Streptococcus pneumoniae, residues 22-193 are 33% similar to dbj|BAB05636.1| chitooligosaccharide deacetylase of Bacillus halodurans, residues 22-193 are 31% similar to emb|CAB44415.1| putative of Streptomyces coelicolor A3(2).","
InterPro
IPR002509
Domain
Polysaccharide deacetylase
PF01522\"[15-114]TPolysacc_deac_1
noIPR
unintegrated
unintegrated
G3DSA:3.20.20.370\"[16-198]TG3DSA:3.20.20.370
SSF88713\"[1-201]TSSF88713


","BeTs to 7 clades of COG0726COG name: Predicted xylanase/chitin deacetylaseFunctional Class: GThe phylogenetic pattern of COG0726 is ----Y-vcEBr-uj-------Number of proteins in this genome belonging to this COG is 1","***** PF01522 (Polysaccharide deacetylase) with a combined E-value of 1.7e-23. PF01522A 22-31 PF01522B 41-83 PF01522C 106-114 PF01522D 131-140","Residues 22-82 are 52% similar to a (PROTEIN HYDROLASE DEACETYLASE PRECURSOR) protein domain (PD002133) which is seen in NODB_RHIME.","","Thu Jun 14 13:07:41 MDT 2001","","Thu Jun 14 13:07:41 MDT 2001","Thu Jun 14 13:07:41 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:07:41 MDT 2001","Thu Jun 14 13:07:41 MDT 2001","","","Fri Mar 9 18:21:49 MST 2001","Mon Jun 25 08:38:22 MDT 2001","Mon Feb 5 15:03:28 MST 2001","Mon Jun 25 08:38:22 MDT 2001","Mon Jun 25 08:38:22 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Mar 9 18:21:49 MST 2001","-54% similar to PDB:2C1G STRUCTURE OF STREPTOCOCCUS PNEUMONIAE PEPTIDOGLYCAN DEACETYLASE (SPPGDA) (E_value = 1.2E_22);-54% similar to PDB:2C1I STRUCTURE OF STREPTOCOCCUS PNEMONIAE PEPTIDOGLYCAN DEACETYLASE (SPPGDA) D 275 N MUTANT. (E_value = 4.6E_22);-46% similar to PDB:1NY1 CRYSTAL STRUCTURE OF B. SUBTILIS POLYSACCHARIDE DEACETYLASE NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET SR127. (E_value = 3.2E_15);-46% similar to PDB:1W17 STRUCTURE OF BACILLUS SUBTILIS PDAA, A FAMILY 4 CARBOHYDRATE ESTERASE. (E_value = 3.2E_15);-46% similar to PDB:1W1A STRUCTURE OF BACILLUS SUBTILIS PDAA IN COMPLEX WITH NAG, A FAMILY 4 CARBOHYDRATE ESTERASE. (E_value = 3.2E_15);","","","Residues 15 to 131 (E-value = 1.5e-25) place PG1876 in the Polysacc_deac_1 family which is described as Polysaccharide deacetylase (PF01522)","Mon Jun 25 08:38:22 MDT 2001","34541720","","","","","","1","","","PG2145" "PG1877","2253817","2254710","894","ATGCTCGCCTTTCACCCGATACCGTCTTTGGTTCGGTGGTTCGCTATGCGCGCAACGGCTCCATTATTACCTTCCACGACTCCCTCAAAGCGGCTCCCAATATGCAGCAGGCCATGCCTCGCGCTGTGCGCTGGCTATTGGATGAAGGCTATACCTTCAAATGTCTGGGCGACCCGGCCGACTAAGCCGTTTACCTGTTTTTTCTGTCCGATGATTGTCCTTACGGAAGACGGATCTCCCACTATCCTTTCGCCTCATTACGGCGAATACTACCACTCCATACACGGTGCGTGTCGTGAGAGCGAACATGTATTCGTTCATACGGGACTGTTGCACCGTTTGGAATCTTTCGATCCTTCCGGTACTTTGTATCTCTTTGAAGTCGGATTCGGAACGGCTCTCAATGCGCTACTGACTCTCCGCGAACAACGATGTCGGGGTCTCTCCATCCATTACTCTGCCATTGAGAAATTTCCTCTCGAAAGGGATGTATATGAGCATCTTCGCTTTTCTGTGGGAATGGCTGATGAAGACAAACTCCTGCAAAGTCTCCACCATGCACCGTGGGGAATGGATTGTGAAATATGTCCCGGCTTCACGTTGCACAAGATAGCATCCGATCTGACCGATTTTACATTCCGCAAGCCTATCGATCTCATCTATTTCGATGCTTTCTCTCCCGAAGCTCAGCCGGAGTTGTGGAGTGAAGAGATCTTCATCCGAATGGTGGCCGCATGTCGATCCGGAGCCGTATTGGCCACCTACTGCGCCAAAGGCGAGATCCGCCGTCGGCTCACACGTGCCGGATTCCATATGGAACGCCTGCCCGGACCTCCCGGTAAACGCGAAATCCTGCGTGGCACTTATTATCTTGAGGACAGAGGAGACAGTCTC","7.40","2.61","33832","MLAFHPIPSLVRWFAMRATAPLLPSTTPSKRLPICSRPCLALCAGYWMKAIPSNVWATRPTKPFTCFFCPMIVLTEDGSPTILSPHYGEYYHSIHGACRESEHVFVHTGLLHRLESFDPSGTLYLFEVGFGTALNALLTLREQRCRGLSIHYSAIEKFPLERDVYEHLRFSVGMADEDKLLQSLHHAPWGMDCEICPGFTLHKIASDLTDFTFRKPIDLIYFDAFSPEAQPELWSEEIFIRMVAACRSGAVLATYCAKGEIRRRLTRAGFHMERLPGPPGKREILRGTYYLEDRGDSL","2253816 2254709 [Bad Olap 2435 182 0]","TIGR ID: PG2146","conserved hypothetical protein","Cytoplasm","Residues 50-286 have 32% similarity to AE002009, D. radiodurans conserved hypothetical protein.Residues 76-289 have 30% similarity to AE004766, P. aeruginosa hypothetical protein.Residues 77-287 have 27% similarity to AE005464, E. coli putative peptidase.","
InterPro
IPR008471
Family
Protein of unknown function DUF752
PF05430\"[72-290]TDUF752
noIPR
unintegrated
unintegrated
signalp\"[1-20]?signal-peptide


","BeTs to 6 clades of COG0500COG name: SAM-dependent methyltransferasesFunctional Class: RThe phylogenetic pattern of COG0500 is AMTKYQVCEBRHUJgPOLINXNumber of proteins in this genome belonging to this COG is 7","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","","","","","Fri Mar 9 14:34:31 MST 2001","Mon Jun 25 08:35:00 MDT 2001","Thu Mar 8 11:03:17 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 8 11:03:17 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 72 to 290 (E-value = 2.1e-25) place PG1877 in the DUF752 family which is described as Protein of unknown function (DUF752) (PF05430)","Mon Jun 25 08:35:00 MDT 2001","34541721","","","","","","1","","","PG2146" "PG1878","2255493","2254915","579","ATGGAATTGCTCAAACAGAGGATCTTGCAAGATGGCAAGTGCTATCCCGGCGGTATATTGAAAGTCGATAGCTTCATCAATCACCAGATGGATTCGAAGCTGATGTACCATGTGGCCGAAGAATTTGCTCGTCTCTTTGCCGACAGCGGAGTCAATAAGATCGTCACGATCGAAGCCAGTGGCATAGCCCCCGCCATCATGGTGGGTTACATCATGAATCTGCCCGTTGTCTTCGTCAAGAAAAAACAGCCCAAGACGATGGATAATATGCTGACTACGACAGTGCATTCCTTTACCAAAAGCCGAGACTATACCGTTTGTATCAGCCACGACTTTCTGACGGATGACGATCGTATTTTGTTTATCGACGACTTCCTCGCTTATGGCAATGCTGCCCAAGGAATCATCGACTTGGCCGAACAGGCAAGTGCTAAGATCGTCGGTATGGGCTTTATCATAGAGAAAGCCTTTCAGAACGGGAGAGAGGCTCTACAGGAAAGAGGTATAAGAGTGGAGTCGCTCGCGATCATCCGAAGCCTTGACAACTGCTGCATAACTATTGCAGACGAAAACGAAGAC","5.00","-6.23","21543","MELLKQRILQDGKCYPGGILKVDSFINHQMDSKLMYHVAEEFARLFADSGVNKIVTIEASGIAPAIMVGYIMNLPVVFVKKKQPKTMDNMLTTTVHSFTKSRDYTVCISHDFLTDDDRILFIDDFLAYGNAAQGIIDLAEQASAKIVGMGFIIEKAFQNGREALQERGIRVESLAIIRSLDNCCITIADENED","2255492 2254914","TIGR ID: PG2147","xanthine phosphoribosyltransferase","Cytoplasm","Residues 1-190 have 43% similarity to Z99115, B. subtilis xanthine phosphoribosyltransferase.Residues 1-180 have 45% similarity to AE004942, P. aeruginosa xanthine phosphoribosyltransferase. Residues 1-190 have 41% similarity to AP001512, B. halodurans xanthine phosphoribosyltransferase.","
InterPro
IPR000836
Domain
Phosphoribosyltransferase
PF00156\"[24-163]TPribosyltran
InterPro
IPR010079
Family
Xanthine phosphoribosyltransferase
TIGR01744\"[1-190]TXPRTase
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.2020\"[2-174]TG3DSA:3.40.50.2020
SSF53271\"[1-172]TSSF53271


","BeTs to 5 clades of COG0503COG name: Adenine/guanine phosphoribosyltransferasesFunctional Class: FThe phylogenetic pattern of COG0503 is -mtkY-vcEBrHujgpol---Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 1-190 are 43% similar to a (XANTHINE PHOSPHORIBOSYLTRANSFERASE EC) protein domain (PD075858) which is seen in XPT_BACSU.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Mar 8 11:10:11 MST 2001","Thu Mar 8 11:10:11 MST 2001","Thu Mar 8 11:10:11 MST 2001","","Thu Mar 8 11:10:11 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 8 11:10:11 MST 2001","-63% similar to PDB:1Y0B Crystal Structure of Xanthine Phosphoribosyltransferase from Bacillus subtilis. (E_value = 1.3E_39);-63% similar to PDB:2FXV Bacillus subtilis Xanthine Phosphoribosyltransferase in Complex with Guanosine 5'-monophosphate (GMP) (E_value = 1.3E_39);","","","Residues 24 to 163 (E-value = 2.2e-07) place PG1878 in the Pribosyltran family which is described as Phosphoribosyl transferase domain (PF00156)","Fri May 18 17:02:03 MDT 2001","34541722","","","","","","1","","","PG2147" "PG1879","2256867","2255533","1335","ATGGCCATCGCACCGAATGAAGCTACCCCACAGGTAGATCTGATCTACAAAATCGAAGACAAGCCTTCTTTCAAAGATGCTGTCTTTGCTGCTTTCCAACACCTCCTTGCCATCTTTGTGGCTATCATTACGCCCCCACTTATCATTGCAGGAGCACTCGATCTGGATCTGGAGACTACTTCTTTCCTCGTCTCCATGGCTCTTTTCGCTTCGGGGGTATCCACCTTTATCCAATGTAGAAGAGTAGGGCCTTTGGGTGCCGGGCTGCTATGTGTGCAGGGCACAAGTTTTTCTTTTATCGGCCCGATTATCAGCGCGGGCCTGGCCGGCGGCCTGCCACTTATATTCGGTTGTACGATAGCGGCAGCTCCGGTAGAGATGATCGTCAGCCGTACCTTCCGTTATCTCAAGCAGATCATTACGCCTCTCGTTTCGGGAATCGTGGTCTTGCTGATCGGTCTGAGTCTGATCAAAGTGGGGATTATCTCATGCGGAGGAGGCAATGCGGCGATGAGCGACGGGACTTTCGGCAACTGGCAGAATCTCAGCATTGCTGCTCTCGTCTTGGTAAGCGTCCTCTTCTTCAATAAGAGCAAAAACAAATACATTCGTATGAGCTCCATCGTACTCGGTCTGCTCGTCGGTTATGTTTTGGCTTACATCCTCGGTCGAGTGGATCTCTCCGGTATGGAGACGACGAAGATCGCACTGCTGAATATCCCTGTTCCATTCAAATACGGCCTTAGCCTGAATCTGTCTTCCTTTATCGCCATAGGGTTGATCTATCTTATTACAGCCATCGAAGCAACGGGGGATATTACGGCCAATTCGATGATTTCGGGCGAACCGGTGGAGGGTGATAAATACATCAAGCGTGTATCGGGCGGAGTATTGGCCGATGGCTTCAATTCGCTCCTCGCCGGCGTGTTCAATTCGTTCCCCAATTCTATCTTCGCCCAAAACAACGGGTTGATCCAGCTCACGGGTGTGGCCAGTCGTCGAGTGGGCTACTATATTGCGGCTATGCTCATTGTGCTTGGCTTGTTCCCGGGTATCGGCCTCATCTTTTCTCTGATGCCCGATCCCGTATTAGGAGGAGCTACGCTGCTGATGTTCGGAACTGTAGCCGCAGCCGGTATACGCATCATTGCAGCTCAGGATATAGACCGGAGGGCTACGATGATTTTGGCCATCAGTCTGTCACTGGGCTTGGGTGTCGAGTTGATGCCGGACATCTTGCGCAACATATCTCTTGACCTGAGAGGTATCTTCTCTTCGGGAATTACGACCGGCGGTCTTGCTGCCATAATTTCTAATATGCTTATCCGTGGCAAA","8.80","4.05","46617","MAIAPNEATPQVDLIYKIEDKPSFKDAVFAAFQHLLAIFVAIITPPLIIAGALDLDLETTSFLVSMALFASGVSTFIQCRRVGPLGAGLLCVQGTSFSFIGPIISAGLAGGLPLIFGCTIAAAPVEMIVSRTFRYLKQIITPLVSGIVVLLIGLSLIKVGIISCGGGNAAMSDGTFGNWQNLSIAALVLVSVLFFNKSKNKYIRMSSIVLGLLVGYVLAYILGRVDLSGMETTKIALLNIPVPFKYGLSLNLSSFIAIGLIYLITAIEATGDITANSMISGEPVEGDKYIKRVSGGVLADGFNSLLAGVFNSFPNSIFAQNNGLIQLTGVASRRVGYYIAAMLIVLGLFPGIGLIFSLMPDPVLGGATLLMFGTVAAAGIRIIAAQDIDRRATMILAISLSLGLGVELMPDILRNISLDLRGIFSSGITTGGLAAIISNMLIRGK","2256977 2255532","TIGR ID: PG2148","xanthine/uracil permease family protein","Inner membrane, Cytoplasm","Residues 11-442 have 53% similarity to AE004337, V. cholerae xanthine/uracil permease family protein .Residues 13-442 have 47% similarity to AE002444, N. meningitidis xanthine/uracil permease family protein. Residues 8-441 have 34% similarity to AE001862, D. radiodurans putative xanthine permease.This sequence is similar to BT4473.","
InterPro
IPR006042
Family
Xanthine/uracil permease
TIGR00801\"[21-436]Tncs2
PS01116\"[359-379]?XANTH_URACIL_PERMASE
InterPro
IPR006043
Family
Xanthine/uracil/vitamin C permease
PTHR11119\"[1-443]TXant/urac/vitC
PF00860\"[25-412]TXan_ur_permease
noIPR
unintegrated
unintegrated
PTHR11119:SF3\"[1-443]TPTHR11119:SF3


","BeTs to 3 clades of COG2233COG name: Xanthine/uracil permeasesFunctional Class: FThe phylogenetic pattern of COG2233 is ------v-EB-h---------Number of proteins in this genome belonging to this COG is 2","***** IPB000444 (Xanthine/uracil permeases family) with a combined E-value of 8.7e-55. IPB000444A 139-156 IPB000444B 255-284 IPB000444C 295-345 IPB000444D 346-383","Residues 18-441 are 41% similar to a (PERMEASE TRANSMEMBRANE TRANSPORT PROTEIN YOLK SAC) protein domain (PD002574) which is seen in YICE_ECOLI.","","Thu Jun 14 13:08:18 MDT 2001","","Thu Jun 14 13:08:18 MDT 2001","Thu Jun 14 13:08:18 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:08:18 MDT 2001","Thu Jun 14 13:08:18 MDT 2001","","","Thu Mar 8 11:25:45 MST 2001","Mon Jan 5 14:58:59 2004","Thu Mar 8 11:25:45 MST 2001","Mon Jun 25 08:31:50 MDT 2001","Mon Jun 25 08:31:50 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 33-442 have 27% similarity to PG1007, uracil permease.","Mon Jun 25 08:31:50 MDT 2001","Thu Mar 8 11:25:45 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 25 to 412 (E-value = 1.5e-116) place PG1879 in the Xan_ur_permease family which is described as Permease family (PF00860)","Mon Jun 25 08:31:50 MDT 2001","34541723","","","","","","1","","","PG2148" "PG1880","2257751","2257032","720","ATGCACTGCTCCATACTTTCCCTGTCCATACCGGCTCATCCAAAGAGGAACATGATTCGTAGAATAGGTATCAGCCTTTTTGTTTTCCTATGTCTGATAAACTCGGCCACAGCCCAAACGTCCAAGCAGTCGCTACGTGTACAGGTCGGGGTAGCCGGAGGCGTTTCGGCCAATAAGGTGCTCTTCAATCCCGCTGTGGACCAAAAGCTCTTGTTGGCTCCTTCGAGCGGTCTCATTGTACGGGTAAATGAGGAGAGTACGGGCACCTTGAAAGTGGGCCTTCAAGCCGAAGCGAGCTACATTCGCTTAGGATGGGAGGAGAAATTTGACGAAAAGCCGGACAATGCCTATCGTCGCACATTCGATTGTGTGACGATACCTCTGCTCACACACATTAAAATCCGGCAAAGAGGTCTCTATGCTTTTCTCAATTTGGGGCCTCGGTTCGGATTCATCATTGCAGAGAAAACCGTCAAGCAAGGCTCGGACTTCACCGAACTGCAGCAGCGACGCTATGCCCAAGGTCTGCACGGACGCTTCGAATGGGGGTTGGCCGGAGGTCCCGGATTCGGATTCGATGCCGGCAGACTGGGAGCCTTCGAATTGGAGGGACGGCTATACTATGGCTTCCATGATCTCCTCAACAACCGGCAGCAAGACCCTCACGGCAGATCCTCGAACCTGACTCTCGGCGTCAAGCTCAACTATCTCTTCGGCCTT","10.50","11.30","26668","MHCSILSLSIPAHPKRNMIRRIGISLFVFLCLINSATAQTSKQSLRVQVGVAGGVSANKVLFNPAVDQKLLLAPSSGLIVRVNEESTGTLKVGLQAEASYIRLGWEEKFDEKPDNAYRRTFDCVTIPLLTHIKIRQRGLYAFLNLGPRFGFIIAEKTVKQGSDFTELQQRRYAQGLHGRFEWGLAGGPGFGFDAGRLGAFELEGRLYYGFHDLLNNRQQDPHGRSSNLTLGVKLNYLFGL","2257750 2257031","TIGR ID: PG2149","conserved hypothetical protein","Outer membrane, Inner membrane, Cytoplasm","This sequence corresponds to gi:34398042 in Genbank.Its nearest neighbor in the NR database is gi:29345986 from Bacteroides thetaiotaomicron VPI-5482.","
noIPR
unintegrated
unintegrated
signalp\"[1-38]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Mar 9 15:55:59 2005","Wed Mar 9 15:55:59 2005","Mon Feb 5 16:26:56 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 9 15:55:59 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Fri Feb 23 16:54:52 MST 2001","34541724","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Wed Mar 9 15:55:59 2005","","1","","","PG2149" "PG1881","2259265","2257763","1503","ATGACAGATCATGTATTCCGGATAAAAGGTCTTTATATCCTGCTGATTACGTGTGTGCTGATGTCCGTAGTATCGGCATCCGGTCAGACGCGTAGCAGGACAAAAGTACACGTAGTGCAAGCCAAAGAGACCGTTTATGGACTGGCGCGCCAATACGGTCTGTCGGAGGATGATATTTATACGCTCAACCCTTCGGCCAGACAAGGGATCAAGGAAGGGCAGACTCTGCTCATTCCGTCCAAACCGGTCCGGGCCAATAGCAAAATATCCGCCGCTCGTCATCCGAGCGAACACATTATCCGGCCACAGGAAACGCTCTACTCCATCAGCAGAAAATATGGATTGAGCGAAGAGGAACTGATGAAAGCCAATCCGGGTATATCTGCTACCAACTTCCCTGCAGGCCACAAACTACGCATCCCCGGCAGCGATTCCACGGCTATGGCTTCCTCCCCTACGACATCGCAGTCGGAGGCTATAGAGGTCGGACTGATGCTCCCTCTATCGGGCAATACCCAGCGATATGTGGAATTCTACGAGGGTATGCTGATGGGGCTGAATCGTCTGAAGAAGAGAGGAGTGTCGGTGACTTTGCGCGTTTACGATGTATCGAATACGTCTGATGCAGAGGATGTGATCCACAGTGGTGAGCTCAATGACTGTCACCTTATTATCGGAGGAGCCTCCAATGACCAGATAGCGGCTATATCACGCTATGCAGATCGACGAGGTATCAACTATGTGGTACCGTTCAGCTCCGGCAAAATAGCCGGAAAGGCTTCGGCCAACCTCTTCCAAATCAATCCTCCTCAAGAGTATCTCTATCCGCAGGTTGCGAAGCTCTTTATGCAACGATATGCCGATCGGACAGCTGTGTTCATCACCGGTGCCGGAGAGACCGAGCCTTGTGCCGCCTTCATCATGTCGGAGATGGACAAAGCAGGCAGACCCTATACGAAAATCTCTTCCGATAGGGAGCAAGGGGAATTGGTCAAGCTGCTCCGATCCGACACGCGTATCGTCATCATGCCCTGCATGACAGGCGAGAGCATCCTCCGCCGTATGCTTTCTCTGGCCGATGGCAATGGCAAGGCAGAGTTGGTTACTTTCTTCGGCTATCCCGAATGGCAGTCCTTCGACAGAGACCTGCAAGGACGGATGAGGAAATACGGCTCTTCGTTCTACTCTTCTTTCTTCTTTAATCCGGCACAGCCCGAAAGCGAACAATTCCTTTCTCAATACTACGCCTGGTACAACCACAAGGTGTCAGGAGGCTTCCCCAAGTATAGTGTCCTCGGCTATGACATTACCAACTACTTCATCGGGGGCTTGGCCTCATATGGCCGTTCTCTCAGGAACAACCTCTCCATGCTTCCCTCTACGGGGTTGCAGACGGACTTCCAATTCCGCGAGATAAGGGGCGATAGTGGTTTTGTCAATCTGAATCTCTTCCTCGTCACGCTACGCTCCGACGGAGGGGTGGATCGTGTGCCCGTATCTCGA","9.70","9.76","55675","MTDHVFRIKGLYILLITCVLMSVVSASGQTRSRTKVHVVQAKETVYGLARQYGLSEDDIYTLNPSARQGIKEGQTLLIPSKPVRANSKISAARHPSEHIIRPQETLYSISRKYGLSEEELMKANPGISATNFPAGHKLRIPGSDSTAMASSPTTSQSEAIEVGLMLPLSGNTQRYVEFYEGMLMGLNRLKKRGVSVTLRVYDVSNTSDAEDVIHSGELNDCHLIIGGASNDQIAAISRYADRRGINYVVPFSSGKIAGKASANLFQINPPQEYLYPQVAKLFMQRYADRTAVFITGAGETEPCAAFIMSEMDKAGRPYTKISSDREQGELVKLLRSDTRIVIMPCMTGESILRRMLSLADGNGKAELVTFFGYPEWQSFDRDLQGRMRKYGSSFYSSFFFNPAQPESEQFLSQYYAWYNHKVSGGFPKYSVLGYDITNYFIGGLASYGRSLRNNLSMLPSTGLQTDFQFREIRGDSGFVNLNLFLVTLRSDGGVDRVPVSR","2259264 2257762","Residues 48-141 are 35 similar (eValue: 5e-09) to TP0623 of Treponema pallidum in our database.TIGR ID: PG2150","conserved hypothetical protein, with LysM repeats","Outer membrane, Cytoplasm, Extracellular","Few weak hits in gapped BLAST e.g.; residues 36-141 are 32% similar to embCAB12390.1 hypothetical proteins of Bacillus subtilis, residues 48-141 are 35% and residues 20-170 are 23% similar to gbAAC65596.1 membrane-bound lytic murein transglycosylase D (dniR) of Treponema pallidum, residues 6-164 are 29% similar to gbAAF10897.1AE001979_3 endopeptidase-related protein of Deinococcus radiodurans.","
InterPro
IPR002482
Domain
Peptidoglycan-binding LysM
PF01476\"[37-79]T\"[98-141]TLysM
SM00257\"[36-79]T\"[97-141]TLysM
noIPR
unintegrated
unintegrated
PTHR21666\"[7-267]TPTHR21666
PTHR21666:SF8\"[7-267]TPTHR21666:SF8
SSF53822\"[153-497]TSSF53822
SSF54106\"[33-81]T\"[94-143]TSSF54106


","BeTs to 3 clades of COG1388COG name: Predicted lytic murein transglycosylaseFunctional Class: NThe phylogenetic pattern of COG1388 is -----q--eB-h----o-IN-Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Fri Sep 10 16:21:44 2004","Fri Sep 10 16:23:45 2004","Fri Sep 10 16:21:44 2004","Mon Feb 5 17:05:03 MST 2001","","Tue Feb 6 15:01:55 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Sep 10 16:21:44 2004","No significant hits to the PDB database (E-value < E-10).","","","Residues 37 to 79 (E-value = 3.4e-08) place PG1881 in the LysM family which is described as LysM domain (PF01476)Residues 98 to 141 (E-value = 1.7e-12) place PG1881 in the LysM family which is described as LysM domain (PF01476)","Fri Sep 10 16:21:44 2004","34541725","","","","","","1","","","PG2150" "PG1882","2259893","2260375","483","ATGATTAAGATTAAAGCAATCGAAAGAAAGGCCGGATTCGGCAAGACCAGCAAAACGCTTTGGTACCCTGCAATCCACTTGCATTCGGATGTGAAGTTCGAGGAGTTTATCGAACTCGTGTCGGATGAGACGACCGTCTCCTCGGCGGATATCAAGGCGGTCTTTGACCGCGCTGCCAAAGTGCTCATCCGTCTGCTTCAGGACGGCAAGAGCATTGATTGTGGCGACATGGGTACCTACCGCCCCAGCATTACGGCGAAGGCCGGTTCGGGCGTTGATAGTGCCGACAAGGTGACGGTGGAGCTTGTGGACAAGGCGAAGGTCATCTATACGCCTCGTATGAAGGTCAAAACTGCTCTCAAGGGCGTCCGTATGGAGCGTGCCGAGCGTGTCCTTGATGTGCCTTACGCCTCTTCGATCAAGCCGAATGAGAACAACAGCGGCGGATCTTCGTCCTCGGACAACAACGGACACGCCGGCCTG","9.90","4.67","17443","MIKIKAIERKAGFGKTSKTLWYPAIHLHSDVKFEEFIELVSDETTVSSADIKAVFDRAAKVLIRLLQDGKSIDCGDMGTYRPSITAKAGSGVDSADKVTVELVDKAKVIYTPRMKVKTALKGVRMERAERVLDVPYASSIKPNENNSGGSSSSDNNGHAGL","2259802 2260374","TIGR ID: PG2152","hypothetical protein","Periplasm, Cytoplasm","No significant hits in gapped BLAST.","
InterPro
IPR005902
Family
Putative DNA-binding protein, HU-related
TIGR01201\"[1-161]THU_rel
InterPro
IPR010992
Family
IHF-like DNA-binding
SSF47729\"[31-125]TIHF_like_DNA_bnd


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 13:08:26 MDT 2001","","Thu Jun 14 13:08:26 MDT 2001","Thu Jun 14 13:08:26 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:08:26 MDT 2001","Thu Jun 14 13:08:26 MDT 2001","","","Mon Feb 5 16:25:52 MST 2001","Mon Feb 5 16:25:52 MST 2001","Mon Feb 5 16:25:52 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","PG1882 is paralogous to PG0764 and PG1896, hypothetical proteins. Residues 1-161 are 100% similar to PG0764. Residues 77-147 are 87% similar to residues 13-83 of PG1896. PG1882 shows weaker similarities to four hypothetical proteins, PG0306, PG1221, PG1068, and PG0200.","Mon Jun 25 08:23:44 MDT 2001","Tue Mar 27 17:28:36 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Mon Jun 25 08:23:44 MDT 2001","34541726","","","","","","1","","","PG2152" "PG1883","2261955","2261068","888","ATGAAGAAGACAAGACAAACGATTCTTTTTTGGTTCTTTCTCCTCGTCGGTTCCTGTGTCTTTGCACAGGAAGTTGGCAAACGCGATGCCCTCCTGTGGGAAATTTCCGGAAATGGGCTGACCGAACCGAGCTATTTGCTCGGCACCTGTCATATAGTGCCTTATACTTATACGGATAGTATCCCCGGCTATAAGGATGCATACGTATCTGTTCGTCAGGTAGTCATCGAGCATGATGTTCGTCCCGAATCCCTGACAGCCTTGATGCCGCGCCTGCAAGCAAACATGATGCTACCGAGCGATACCACTTATGCCATGCTCTATTCTCCTGAAGAGCTGGAGGAATTGAACCAATTCCTCCAATCCGCCGGCATGGGTTCTGTCGACCAGATACCCCTCCGCCCCTCTATCGTTTCTTTCTTTGTCAGTATGGGGGCCGAGACTATGCGCCTTCAGGGGCAAGAACCGATGGATGTCGGCGTTGTCGTTCATGGACTCGCTGACGGAAAAGAGGCTGCGTTTTTCGAAACGCAGGATGAGGCTTGGGATGCTATGCAATATCTCCTCTTTTCCAAAGGCCTGAAAGAGCAAGCTAAAGACCTGCTTAAGACTGTTCGAGATATACAAAAGGAGCAGAATCCTTTAGCCAAACTTGTCAGGGACTATAAGGCTCAGCAGATAGAAGCCGTGTTCGAAGGTCAATACATGACACCTCAGGATATGGAGCGTTTGGTCTATAGACGTAATGCACGATGGATGGAAAAGATACCTGCGCTACTGTCTGCAAAGCCCACTCTCATAGCTGTAGGAGCCGGTCACCTCATCGGCGAAAAAGGACTGGTGCAGGAACTTCGCACTCGTGGCTACAAACTCCGCGCTCTTTCGCTC","5.80","-3.11","33452","MKKTRQTILFWFFLLVGSCVFAQEVGKRDALLWEISGNGLTEPSYLLGTCHIVPYTYTDSIPGYKDAYVSVRQVVIEHDVRPESLTALMPRLQANMMLPSDTTYAMLYSPEELEELNQFLQSAGMGSVDQIPLRPSIVSFFVSMGAETMRLQGQEPMDVGVVVHGLADGKEAAFFETQDEAWDAMQYLLFSKGLKEQAKDLLKTVRDIQKEQNPLAKLVRDYKAQQIEAVFEGQYMTPQDMERLVYRRNARWMEKIPALLSAKPTLIAVGAGHLIGEKGLVQELRTRGYKLRALSL","2261954 2261067","TIGR ID: PG2155","lipoprotein","Cytoplasm, Periplasm","This sequence corresponds to gi:34398046 in Genbank.Its nearest neighbor in the NR database is gi:29349724 from Bacteroides thetaiotaomicron VPI-5482.","
InterPro
IPR010891
Family
GumN
PF07446\"[33-289]TGumN
noIPR
unintegrated
unintegrated
PS51257\"[1-19]TPROKAR_LIPOPROTEIN


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Mar 9 15:59:10 2005","Wed Mar 9 15:59:10 2005","Wed Feb 7 12:30:44 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 9 15:59:10 2005","No significant hits to the PDB database (E-value < E-10).","","","Residues 33 to 289 (E-value = 1.1e-19) place PG1883 in the GumN family which is described as GumN protein (PF07446)","","34541728","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Wed Mar 9 15:59:10 2005","","1","","","PG2155" "PG1884","2262738","2261995","744","ATGTCCCTCCCCTTATTCTATGCGCCCGATATAGAGCAGTCCGACAGACTGCCTGACGACGAAGCCGGCCATATCTTGCGCGTCCTGCGTATGCAGGCAGGCGATCGTCTCCGTCTGACCGACGGGCGAGGTTCGTTCTTCGATGCCGTCATAGAAACTGCCGATCGCAAGAGCTGTTATGTAAGCGTATGCGGACAGGAGCCGTGGCAAAAACCTTGGCGAGACAGGATTACCATTGCTATTGCTCCCACCAAACAGAGTGAGCGGATGGAGTGGATGCTGGAGAAGTTGGTGGAAATAGGGGTGGACGAAGTGGTCTTTATCGAATCCGAACATTCCGAGCGTAGGCGTATCAAAGCGGAACGCTTGGAGCGCATCGCAATTAGTGCGATGAAGCAGTCGCTCAAAGCCTCCTTTCCCGTGATTCAAGTCAATATCCCCATACAAACTGTAATTGCCGACACTCCGAAGACAGCTGTTCGTCTTATCGCTTATGTGGACGAAGCTGTTCGAGCCGAAATAACCCAAGGCCGAGGCTATCCGTCGGATTTCTACCACGTAGGACAGGATGTACTGATTCTAATAGGGCCGGAAGGAGACTTCTCTCCGTCTGAAGTGGAGTCCGCCTTGCTTGCCGGATTTGCACCCGTTTCTCTTGGTGAGAGCCGCTTGCGAACGGAAACGGCAGGTCTCGTTGCTTGCCAGTGGATACATACGCTGCAAGCCTGCTGCCGCATTGGCGAA","5.00","-7.25","27783","MSLPLFYAPDIEQSDRLPDDEAGHILRVLRMQAGDRLRLTDGRGSFFDAVIETADRKSCYVSVCGQEPWQKPWRDRITIAIAPTKQSERMEWMLEKLVEIGVDEVVFIESEHSERRRIKAERLERIAISAMKQSLKASFPVIQVNIPIQTVIADTPKTAVRLIAYVDEAVRAEITQGRGYPSDFYHVGQDVLILIGPEGDFSPSEVESALLAGFAPVSLGESRLRTETAGLVACQWIHTLQACCRIGE","2262737 2261994","TIGR ID: PG2156","conserved hypothetical","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 6-233 are 28% similar to dbj|BAB05069.1| unknown conserved protein of Bacillus halodurans, residues 3-240 are 27% similar to emb|CAB83820.1| hypothetical protein NMA0528 of Neisseria meningitidis Z2491, residues 1-243 are 30% similar to gb|AAC21968.1| conserved hypothetical protein of Haemophilus influenzae Rd.","
InterPro
IPR006700
Family
Protein of unknown function DUF558, methyltransferase predicted
PF04452\"[15-239]TDUF558
TIGR00046\"[1-134]T\"[191-233]TDUF558_mtase_pred
noIPR
unintegrated
unintegrated
G3DSA:2.40.240.20\"[2-70]TG3DSA:2.40.240.20
G3DSA:3.40.1280.10\"[71-239]TG3DSA:3.40.1280.10
PIRSF015601\"[3-244]TMT_UPF0088
SSF75217\"[71-248]TSSF75217
SSF88697\"[3-69]TSSF88697


","BeTs to 10 clades of COG1385COG name: Uncharacterized BCRFunctional Class: SThe phylogenetic pattern of COG1385 is -----qvcebrhuj--OL--xNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 17-125 are 33% similar to a (PROTEIN REGION DNAJ-RPSU INTEREGENIC) protein domain (PD010785) which is seen in YGGJ_HAEIN.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Feb 7 12:32:53 MST 2001","Mon Feb 12 09:33:22 MST 2001","Wed Feb 7 12:32:53 MST 2001","","Mon Feb 12 09:33:22 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","-47% similar to PDB:1VHY Crystal structure of an hypothetical protein (E_value = 6.7E_19);-47% similar to PDB:1NXZ Crystal structure of H. influenzae hypothetical protein yggj_haein northeast structural genomics consortium target IR73. (E_value = 8.7E_19);-48% similar to PDB:1Z85 Crystal structure of hypothetical protein (TM1380) from Thermotoga maritima at 2.12 A resolution (E_value = 1.5E_15);-43% similar to PDB:1V6Z Crystal structure of TT1573 from Thermus thermophilus (E_value = 8.4E_14);-43% similar to PDB:2CX8 Crystal structure of methyltransferase with ligand(SAH) (E_value = 8.4E_14);","","","Residues 124 to 238 (E-value = 2e-12) place PG1884 in the DUF558 family which is described as Protein of unknown function (DUF558) (PF04452)","","34541729","","","","","","1","","","PG2156" "PG1885","2263086","2264084","999","ATGAAAAGACTGATAACAACAGGAGCAGCCTTTCTACTGGCTGCTACACTCTCTGCCTGCAACGGCAATAACACAAGTGAAACCCAAGGCGATCGGACTGAACAGGCCGAAACGGTACAAGCCGATCTCTTCTCGGCCGACTCGGCTTACACCTTCGTGCAGCGTCAGGTGAACTTTGGCCCTCGCATCCCCGGCACAGCTCCGCATCGTGCCTGTGGAGATTGGCTCGTGGCCACGCTTCGCAGCTTTGGTGCCGCGGTGCAAGAGCAGACAGCCGAAATCAAAGCGCATGATGGCACCATGCTGCCCATGCGCAATATCATAGCCTCATACCGCCCCGAAGCCACCGGGCGTATGCTACTGATGGCTCACTGGGATACGCGGCCGGTCTGCGATCAGGATGCCAACCCCGCTATGCACACAGAGACCTTCGACGGTGCGGACGATGGCGGCAGCGGAGTAGGCGTATTATTGGAGATAGCGCGCTATCTGGGACAACAGAAGGATTTGGGCATGGGCATCGATATTGTATTCTTCGACACAGAGGATTACGGTAGCTATGGCGATGACGAATCATGGTGTCTCGGCTCACAGTATTGGAGCCGCAATCCGCACGTAGCAGGTTACAAGGCAGAAGCCGGCATCCTGCTGGATATGGTTGGTGCCAAAGGAGCTACATTCTATTGGGAGTACTTCTCCAAGAGCTATGCCCCGGGGTTGATCTCTGCCGTATGGCAGACGGCAGCCGCATTAGGATATGGCAACTACTTCATCCAAGCCGACGGAGGCGCTCTGACAGATGATCATGTACCTGTGATCAAGAATTTAGGGATCCCTTGCATCGATATTATCAATTACTCGTCCAAGAACGAACATGGCTTCGGCGACCACTGGCATACCCAGAGGGACAATATGCAGATCATCGACAAAAATGTACTCGATGCCGTGGGCGAAACCGTCATTCGATATTTGGACGAACAGGTGAAAGCCGCTTCACAC","4.70","-15.82","36367","MKRLITTGAAFLLAATLSACNGNNTSETQGDRTEQAETVQADLFSADSAYTFVQRQVNFGPRIPGTAPHRACGDWLVATLRSFGAAVQEQTAEIKAHDGTMLPMRNIIASYRPEATGRMLLMAHWDTRPVCDQDANPAMHTETFDGADDGGSGVGVLLEIARYLGQQKDLGMGIDIVFFDTEDYGSYGDDESWCLGSQYWSRNPHVAGYKAEAGILLDMVGAKGATFYWEYFSKSYAPGLISAVWQTAAALGYGNYFIQADGGALTDDHVPVIKNLGIPCIDIINYSSKNEHGFGDHWHTQRDNMQIIDKNVLDAVGETVIRYLDEQVKAASH","2263085 2264083","TIGR ID: PG2157","conserved hypothetical protein","Outer membrane, Periplasm, Cytoplasm, Extracellular","Weak similarities in gapped BLAST to eukaryotic glutaminyl-peptide cyclotransferase precursor sequences (EC 2.3.2.5), e.g. residues 106-324 are 22% similar to QPCT_HUMAN.","
InterPro
IPR007484
Domain
Peptidase M28
PF04389\"[117-314]TPeptidase_M28
noIPR
unintegrated
unintegrated
G3DSA:3.40.630.10\"[44-310]TG3DSA:3.40.630.10
PTHR12283\"[61-326]TPTHR12283
PS51257\"[1-20]TPROKAR_LIPOPROTEIN
SSF53187\"[33-324]TSSF53187


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Fri Sep 10 17:24:56 2004","Thu Feb 8 13:08:32 MST 2001","Mon Feb 5 16:25:00 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis. Subthreshold similarities are observed to ISPg2-related sequences.","Thu Feb 8 13:08:32 MST 2001","Fri Sep 10 17:24:56 2004","No significant hits to the PDB database (E-value < E-10).","","","Residues 39 to 326 (E-value = 2.5e-05) place PG1885 in the Glutaminyl_cycl family which is described as Glutaminyl cyclase (PF03565)Residues 90 to 331 (E-value = 6.9e-06) place PG1885 in the Peptidase_M28 family which is described as Peptidase family M28 (PF04389)","Fri Sep 10 17:24:56 2004","34541730","","","","","","1","","","PG2157" "PG1886","2264111","2264533","423","ATGCCAAGTATAAACGAAATACAGGATCAGATCATCGAGGAATTCTCCGCTTTCGATGATTGGATGGATCGTTATCAACTGCTGATCGATATGGGCAGTGCCCTACCCGAACTGGATGCTGCAGATAAGGTGCCGGAGAACATTATCGAAGGTTGCCAGAGTCGCGTATGGATAGCAGCCTCCCTGCAAGATGGCAAGGTGCACTACCGCGCCGATAGCGATGCCCTCATCGTCAAAGGGATAGTGGCTCTGCTACTACGGATACTGAACGACCAGAAACCGAAAGACATCGTTTCGTCCGATCTCTACTTCATTCGCGAAGTAGGGTTGCAAGATCATCTCTCGCCGACACGCTCCAACGGCCTCGTCTCCATGCTCAAGCAGATGCGTTTCTATGCTCTTGCCTTTGAAGGTGGGGAGGCC","4.30","-9.57","15842","MPSINEIQDQIIEEFSAFDDWMDRYQLLIDMGSALPELDAADKVPENIIEGCQSRVWIAASLQDGKVHYRADSDALIVKGIVALLLRILNDQKPKDIVSSDLYFIREVGLQDHLSPTRSNGLVSMLKQMRFYALAFEGGEA","2264110 2264532 [Delay by 189 2452 163 0]","TIGR ID: PG2158","conserved hypothetical protein","Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 10-141 are 41% similar to dbj|BAA18628.1| hypothetical protein of Synechocystis sp., residues 8-135 are 39% similar to gb|AAF83804.1|AE003937_8 conserved hypothetical protein of Xylella fastidiosa .","
InterPro
IPR003808
Family
Fe-S metabolism associated SufE
PF02657\"[11-134]TSufE
noIPR
unintegrated
unintegrated
G3DSA:3.90.1010.10\"[8-133]TG3DSA:3.90.1010.10
SSF82649\"[4-136]TSSF82649


","BeTs to 4 clades of COG2166COG name: SufE protein probably involved in Fe-S center assemblyFunctional Class: RThe phylogenetic pattern of COG2166 is -------cE-rh------in-Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 11-135 are 42% similar to a (PROTEIN INTERGENIC REGION 3'REGION) protein domain (PD008198) which is seen in YE19_SYNY3.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon Feb 12 09:40:05 MST 2001","Mon Feb 12 09:40:05 MST 2001","Mon Feb 12 09:40:05 MST 2001","","Mon Feb 12 09:40:05 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","-63% similar to PDB:1MZG X-Ray Structure of SufE from E.coli Northeast Structural Genomics (NESG) Consortium Target ER30 (E_value = 5.8E_21);-58% similar to PDB:1NI7 NORTHEAST STRUCTURAL GENOMIC CONSORTIUM TARGET ER75 (E_value = 8.9E_14);","","","Residues 11 to 134 (E-value = 3.8e-42) place PG1886 in the SufE family which is described as Fe-S metabolism associated domain (PF02657)","","34541731","","","","","","1","","","PG2158" "PG1887","2264540","2265934","1395","ATGGATCATCTGACCGTCATCATAGGAGCCGGGCTCACCGGACTGACCACAGCCGCTTTCCTCAGAGCTGCCGGCAGGCCTGTTCTGGTTTTGGAGCGAGCTGCTCATATCGGCGGACAGATACGCACCTACAGAGAGGACGGGTTCGTGTTCGAGACAGGGCCGAATACCGGCACGATCTCCTCTCCGGAAGTGGCCGAGCTATTCGAACTGCTCGGATTGGAACCTGAGATAGCCACTCCTGCGGCCTCTAACCGTCTGATATGGAAAGGCAACAAACTGTATCCCCTTCCAAGGAACATCGCCGAGGCAGTCGCTACTCCTCTCTTTTCCCTGTGGGACAAATGGCGTATCCTCGGCGAACCCTTCCGCCGGAGAGGCGGACAACCCAATGAGACGGTCGGAGCCTTGGCTCGTCGCCGGCTGGGCAAAAGTTTTGTGGACTACGCAGTCGATCCTTTCCTCGGAGGTATTTATGCAGGAGATCCCGACCAACTGGTTACTCGCTTTGCCCTGCCCAAACTATACGATCTGGAGCAGCGATACGGCAGCTTCGTACTGGGTGCCGTTCGAAAAGCCCGACAGCCGCAAAGCGAACGCGACCGCAAAGCCTCGCGCAAGGTCTTTTCCGTACAAGGGGGACTCGGTCTTCTGGTCGAAGCTTTGGCCGACTACATCGGACGCGAACACATCCTGACGGAAACGCAAATCCGATACATCAATCACCCGGGAGCACACACCTTCGGCCTTACCTATACGGATGCTTCGGAAGAGGAGCACACCATTCCTTGCCGCCACTTGGTGAGTACGGTGGCAGCGCACCATATCCCCACACTGTTCGACCACTTCCCTGCGGATGAATCAGCCGTGTTCGAGCAGCTCTATTATGCACCCATGATAGAGGTTGCCGTAGGGTTCCGCCGAAATGTTGCCACACACCTGCCGGCTTTCGGGTGCCTGATCCCTTCGAGGGAAAATCGTCGCATCCTCGGCATCCTGTTCCCTTCGGACTGTTTCCGTGGCAGAGCACCTGAAGGGGGCGCACTCTATTCCATATTCATGGGTGGGGTGCGAAATGCTTCGCTCATAGACCTTTCCGACGAGGAGATCAGCACGATTGCAATGGAAGAGCTACGCGATATGCTGCGCATACCTCACACCTGTAAGCCGGATCTGCTGCACATCTCACGCCACCGCCATGCCATACCGCAATACTACGCCGATACGGAACTTCGGCAGGACATCATCCGGCGGATGGAAATGCGCTGGCCGGGCTTGCATTTGGGTGGCAATATGCATGGGGGAATAGGTATGGCACATCGTATCTCACAAGGTGTGGAAATGGCTCGAAGTATCATAGAAGAGACAGCCATCGCCGAACGCTCTGCCAGAGGC","7.50","3.18","51732","MDHLTVIIGAGLTGLTTAAFLRAAGRPVLVLERAAHIGGQIRTYREDGFVFETGPNTGTISSPEVAELFELLGLEPEIATPAASNRLIWKGNKLYPLPRNIAEAVATPLFSLWDKWRILGEPFRRRGGQPNETVGALARRRLGKSFVDYAVDPFLGGIYAGDPDQLVTRFALPKLYDLEQRYGSFVLGAVRKARQPQSERDRKASRKVFSVQGGLGLLVEALADYIGREHILTETQIRYINHPGAHTFGLTYTDASEEEHTIPCRHLVSTVAAHHIPTLFDHFPADESAVFEQLYYAPMIEVAVGFRRNVATHLPAFGCLIPSRENRRILGILFPSDCFRGRAPEGGALYSIFMGGVRNASLIDLSDEEISTIAMEELRDMLRIPHTCKPDLLHISRHRHAIPQYYADTELRQDIIRRMEMRWPGLHLGGNMHGGIGMAHRISQGVEMARSIIEETAIAERSARG","2264539 2265933","MD Function: catalyzes the 6-electron oxidation of protoporphyrinogen IX to form protoporphyrin IX. Catalytic activity: protoporphyrinogen-IX + O(2) = protoporphyrin IX + H(2)O. Cofactor: FMN flavoprotein (potential). Pathway: penultimate step in porphyrin biosynthesis.TIGR ID: PG2159","protoporphryninogen oxidase (PPO)","Periplasm, Cytoplasm, Inner membrane","Numerous significant hits in gapped BLAST to protoporphyrinogen oxidase sequences, e.g. residues 6-453 are 32% similar to gb|AAC07778.1| protoporphyrinogen oxidase of Aquifex aeolicus, residues 7-453 are 30% similar to gb|AAD13609.1| protoporphyrinogen oxidase of Myxococcus xanthus, residues 7-453 are 29% similar to gb|AAD02291.1| protoporphyrinogen oxidase PX-2 of Nicotiana tabacum.","
InterPro
IPR002937
Domain
Amine oxidase
PF01593\"[12-431]TAmino_oxidase
InterPro
IPR004572
Family
Protoporphyrinogen oxidase
TIGR00562\"[1-460]Tproto_IX_ox
noIPR
unintegrated
unintegrated
G3DSA:1.10.3110.10\"[97-195]TG3DSA:1.10.3110.10
G3DSA:3.40.50.720\"[5-45]TG3DSA:3.40.50.720
G3DSA:3.90.660.20\"[230-403]TG3DSA:3.90.660.20
PTHR10742\"[1-421]TPTHR10742
SSF51905\"[1-366]TSSF51905


","BeTs to 5 clades of COG1232COG name: Protoporphyrinogen oxidaseFunctional Class: HThe phylogenetic pattern of COG1232 is a--k-q---br-------in-Number of proteins in this genome belonging to this COG is 1","***** IPB000171 (Bacterial-type phytoene dehydrogenase) with a combined E-value of 1.8e-08. IPB000171A 6-36","Residues 49-364 are 30% similar to a (OXIDASE PROTOPORPHYRINOGEN OXIDOREDUCTASE) protein domain (PD004706) which is seen in O67814_AQUAE.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Thu Mar 22 16:00:27 MST 2001","Wed Mar 22 12:48:44 MST 2000","Thu Mar 22 16:00:27 MST 2001","Fri Dec 8 10:42:32 MST 2000","Thu Mar 22 16:00:27 MST 2001","Thu Mar 22 16:00:27 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 22 16:00:27 MST 2001","-46% similar to PDB:2IVD STRUCTURE OF PROTOPORPHYRINOGEN OXIDASE FROM MYXOCOCCUS XANTHUS WITH ACIFLUORFEN (E_value = 1.3E_49);-46% similar to PDB:2IVE STRUCTURE OF PROTOPORPHYRINOGEN OXIDASE FROM MYXOCOCCUS XANTHUS (E_value = 1.3E_49);-46% similar to PDB:1SEZ Crystal Structure of Protoporphyrinogen IX Oxidase (E_value = 2.4E_48);","","","Residues 12 to 453 (E-value = 2.1e-22) place PG1887 in the Amino_oxidase family which is described as Flavin containing amine oxidoreductase (PF01593)","Thu Mar 22 16:00:27 MST 2001","34541732","","","Dailey,H.A. and Dailey,T.A.Protoporphyrinogen oxidase of Myxococcus xanthus. Expression,purification, and characterization of the cloned enzymeJ. Biol. Chem. 271 (15), 8714-8718 (1996)","","Fri Dec 8 10:42:32 MST 2000","1","","","PG2159" "PG1887.1","2266418","2266149","270","ATGGTCTCACATGAGAGAATACTATGGTCTCCTATGAGAGGATACTATGGTCTTACACGAGAGGATACTATGGTCTCATATGAGAGGATACTATGCTCTCACATGAGAGGATACTATGGTCTTACACGAGAGGATACTATGGTCTCATATGAGAGGATATTATGGTCTCACATGAGAGGATACTATGATCTATTGATGGAAGATGCTATCTGCTCTGTGTCGGATGGCAGGTTCGGGGAGTGGGAGGTTCCGTGCGAGCTGTTAAACCGA","","","10798","MVSHERILWSPMRGYYGLTREDTMVSYERILCSHMRGYYGLTREDTMVSYERILWSHMRGYYDLLMEDAICSVSDGRFGEWEVPCELLNR","","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No significant hits in gapped BLAST.","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Wed Mar 7 12:08:23 MST 2001","Mon Feb 12 09:41:45 MST 2001","Mon Feb 12 09:41:45 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","PG1887.1 is paralogous to PG0564.1, a hypothetical protein. Residues 4-70 are 83% similar to PG0564.1. Similarities are also seen to PG0527.1, a hypothetical protein.","Wed Mar 7 12:08:23 MST 2001","Wed Mar 7 12:08:23 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Jun 5 14:55:58 MDT 2001","","","","","","","1","","","" "PG1888","2267709","2266813","897","ATGAGTATTCATATCTGTCAGCCTGTCTCTCCCAAAGAAAATCCGAATGGCATCCTGAACAACAGCCGACCGACCACTGCTCTGTCCGGATTGCCCGAACTCCACACGGTAGGACAAGGAGCTGATTTGGAAATCTGGACCAAAGACAGCCATGCTTTGCTCTTCCTGCTCAAAGGAGAGCCGGCCGTATTTGTCGGGCCGGAATCCGGTAATTCGCAATTGTCGGGAGATAATGTTGTCCTTTTGGCTGCCAATCTTCGTATAAGACTTAGAGCTGAAAAAGGCCCGGCTACGCTCATTTGCTTTTATTTCCATCCCACGCTCCATTTATGCCTCGGCATTTGTCCCTCTTCGGGCAATAAGAAAGAATGCCGGAGACGAACCGAAATCGTTCACATCTCCTCCTTGCAACGAGAGACAATGGTGAACTCCTGGCTCCACTCTGTGATGGGATATTTGTCAGAAATGCCCACTTCGTCCGAGATATTCGAGCTGAAACTGCGCGAACTCTTCTGCATCTTCCGCTCACGCTACGAAAAGCCGCTTTTAGACAACTTTCTCTCCTCATTCCACTGTCAGAACAAGGGCTTTCGTGCTTTCGTATTCCGACACCATTTGGAGTGCCGATCGGCAGAAGAGCTTGCAGCCAAAATGAATCTGTCGCTCAGTTCTTTCAAACGTCACTTCAATCAGGAATTCAGTTGTCCGCCACTCAAATGGATGCATGAAGAAAGGGCCAAGCATGTCTACACAGACTTGGCCGATCCGTCTCTGTCTCTCAAGGCAATAGCGGAAAAGAATCTCTTCTCCTCTGTCAGCTACCTCTGTGCTTTCTGTCGCAAGATGCTCGGCAATACACCCCTACAACTTCGCAAGGCAATGGGGCAACAGCCCAAA","8.80","11.61","33818","MSIHICQPVSPKENPNGILNNSRPTTALSGLPELHTVGQGADLEIWTKDSHALLFLLKGEPAVFVGPESGNSQLSGDNVVLLAANLRIRLRAEKGPATLICFYFHPTLHLCLGICPSSGNKKECRRRTEIVHISSLQRETMVNSWLHSVMGYLSEMPTSSEIFELKLRELFCIFRSRYEKPLLDNFLSSFHCQNKGFRAFVFRHHLECRSAEELAAKMNLSLSSFKRHFNQEFSCPPLKWMHEERAKHVYTDLADPSLSLKAIAEKNLFSSVSYLCAFCRKMLGNTPLQLRKAMGQQPK","2267708 2266812","Weak hit to last 150 amino acids.TIGR ID: PG2161","hypothetical protein","Cytoplasm","Weak hits in gapped BLAST to trans-regulatory protein domain; e.g.residues 165-292 are 26% similar to gb|AAA25816.1| S synthesis trans-regulatory protein of Pseudomonas aeruginosa.","
InterPro
IPR000005
Domain
Helix-turn-helix, AraC type
SM00342\"[207-291]THTH_ARAC
PS01124\"[195-293]THTH_ARAC_FAMILY_2
InterPro
IPR009057
Domain
Homeodomain-like
SSF46689\"[190-241]T\"[244-292]THomeodomain_like
noIPR
unintegrated
unintegrated
PTHR11019\"[212-293]TPTHR11019
PTHR11019:SF11\"[212-293]TPTHR11019:SF11


","BeTs to 3 clades of COG2207COG name: AraC-type DNA-binding domain-containing proteinsFunctional Class: KThe phylogenetic pattern of COG2207 is ------vCEBRH---------Number of proteins in this genome belonging to this COG is 4","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Mon Feb 12 09:47:01 MST 2001","Mon Feb 12 09:47:01 MST 2001","Mon Feb 12 09:47:01 MST 2001","Mon Feb 12 09:47:01 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541733","","","","","","1","","","PG2161" "PG1889","2268857","2267709","1149","ATGCGCTATTTCATCGTAGCCGGCGAAGCCTCGGGCGACCTGCATGCATCCAATCTGGTTCGTGCCTTGAAAGAGCATGACCCGGAAGCCGTGTTTGCATTCATGGGGGGGGATTTCTTGTCCGAGGCTACCGGAGAGCGACCGATCTTTCATTACAGGGAAGTAGCCTTCATGGGCTTCATTCCGGTACTCACGCACCTCGGTGTCATCCGCCGCGCGGGCGAACATGTGCAGGAGCAGATGCGAGCATTTAACCCCGACGTTGTCATCGCAGTGGACTACCCGGGCTTCAATATGCGCTACGTACTTCCGTTTGTACGCGAAGAGCTTGGCAAGCCGATAGTCTATTATATCTCTCCTAAGGTCTGGGCATGGAAATCCTGGCGAATCAAGACGTTGAAGAAATACGTCGATCTCATGCTCTGCATCTTGCCTTTCGAGAAAGATTTTTTTGCCGGACACGATTTTCCTGTCATCTATGTAGGCAATCCGTGCTATGATGCCGTCAAGCAACACATGCGGCCTACGATCGAAGAGCAAGAGCGGTCAGCCAAAGATTCTCGTCAAGTAGCCCTTCTCTGTGGAAGTCGCTTGCTCGAAGTGAAGGAGAATTTGCCTGTGATGCTGCGTGTGATGAAGCAATTCCCGGACTACCGCCCTGTCATAGCCGGTGCACCCGGACTGACGATACAGGACTATACTCCATTTTTGCCCGACGACAGCATTCCCGTTGTATTCGGACGCACGTATGAAATACTCCGAGAGAGCAAAGCAGCCCTCGTAACTTCAGGAACGGCTACGCTCGAAACCGCACTGATCGGTACGCCACAGGTCGTATGCTACTATATTCGAGGAGGTCGACTGACCAATCTGATTTTCAAGTATTGCTTTGGTACGCCTTTTATTTCGCTGACCAACCTCATTGCCGGCAGGGCTGTAGTGCCCGAACTTTTCGGAGCCTTGTTCACGGAGAAAAGGTTGGCCGCAAGTTTGTCTCCGCTCCTTGATGCTTCGTCCGCAGAGCGACAAGCACAGTTGTCCGGATACGACTCCATCCGCAAAAGCATCGGTACGGACAATACCTCGGACAAGGCAGCTCGTCACATAATAGCTCGCTTTGCCAAAGATAACGCCCGACCATCCTCCTTA","8.60","5.71","42957","MRYFIVAGEASGDLHASNLVRALKEHDPEAVFAFMGGDFLSEATGERPIFHYREVAFMGFIPVLTHLGVIRRAGEHVQEQMRAFNPDVVIAVDYPGFNMRYVLPFVREELGKPIVYYISPKVWAWKSWRIKTLKKYVDLMLCILPFEKDFFAGHDFPVIYVGNPCYDAVKQHMRPTIEEQERSAKDSRQVALLCGSRLLEVKENLPVMLRVMKQFPDYRPVIAGAPGLTIQDYTPFLPDDSIPVVFGRTYEILRESKAALVTSGTATLETALIGTPQVVCYYIRGGRLTNLIFKYCFGTPFISLTNLIAGRAVVPELFGALFTEKRLAASLSPLLDASSAERQAQLSGYDSIRKSIGTDNTSDKAARHIIARFAKDNARPSSL","2268862 2267708","TIGR ID: PG2162","lipid A disaccharide synthase","Cytoplasm, Inner membrane","Numerous significant hits in gapped BLAST to lipid A-disaccharide synthase; e.g. residues 1-365 are 34% similar to gb|AAG07031.1|AE004784_4 lipid A-disaccharide synthase of Pseudomonas aeruginosa.","
InterPro
IPR003835
Family
Glycosyl transferase, family 19
PF02684\"[3-370]TLpxB
TIGR00215\"[1-372]TlpxB
noIPR
unintegrated
unintegrated
SSF53756\"[1-279]TSSF53756


","BeTs to 6 clades of COG0763COG name: Lipid A disaccharide synthetaseFunctional Class: MThe phylogenetic pattern of COG0763 is -----q-ce--huj----inxNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 5-317 are 31% similar to a (SYNTHASE LIPID A LIPID-A-DISACCHARIDE) protein domain (PD014237) which is seen in LPXB_ECOLI.","","Thu Jun 14 13:09:03 MDT 2001","","Thu Jun 14 13:09:03 MDT 2001","Thu Jun 14 13:09:03 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:09:03 MDT 2001","Thu Jun 14 13:09:03 MDT 2001","","","Wed Mar 22 12:43:58 MST 2000","Mon Jun 25 08:16:48 MDT 2001","Mon Feb 12 09:50:23 MST 2001","","Mon Jun 25 08:16:48 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue May 22 15:41:29 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 3 to 370 (E-value = 5.6e-69) place PG1889 in the LpxB family which is described as Lipid-A-disaccharide synthetase (PF02684)","Mon Jun 25 08:16:48 MDT 2001","34541734","","","","","","1","","","PG2162" "PG1890","2269664","2268897","768","ATGAAAGCCGATCCGATTGAAATTTTAGTTTCGAATGACGATGGTTTTCGAGCACAGGGTATCCGCGAGCTGGCAGAAGCCCTGCGCCCATTAGGGAATGTCACGATCGTAGCTCCCGACGGGCCACGATCCGGGGCTTCGGCTGCCATTACCTCTACTCTCCCCATCAAGCTCAAGCTTCGGCACAGAGAGGAAGGCTATACGGTATACAGCTGTACGGGGACGCCGGTAGATTGTGTGAAGTTGGCGATGAACACAGTCTTCAAGGAGCGCAAGCCCGATTTGCTGGTCACGGGTGTGAATCACGGCAACAATGCCGGCATCTGCGTAATCTATTCCGGCACGGTGGGTGCTGCGATGGAAGGATGTGTGTGTGATGTGCCGGCTCTGGCCGTTTCGCTGGACGACCATAGCGAGATTTGCGATATGAGTCATGCCACGGCCTATGCCGTGCATGTCAGTCGTATGATCCTGAAGAATGGCTTGCCTCAGGACACGATGCTAAGCATGAATGTTCCGAAGGGAAAACCTTTGGGGCTAAAGCCTTGCGCCGTTACGGACGGTCGTTTTGTCGACGAATACATGGCTTCCGAAGATGCACGGGGCAATGCTGTGTATTGGATGACAGGACGTCAGATCAATAAAGGCACCATAGAGGGTGATTTGGAACTGATGCATGCGGGCTACGTTACACTATCTCCCATCAAACTGAATATGACTTCGAGACGTTATCTACCTGTCTTGGAGGAACTTCTCAAGAGGAGCGTC","6.80","-0.89","27634","MKADPIEILVSNDDGFRAQGIRELAEALRPLGNVTIVAPDGPRSGASAAITSTLPIKLKLRHREEGYTVYSCTGTPVDCVKLAMNTVFKERKPDLLVTGVNHGNNAGICVIYSGTVGAAMEGCVCDVPALAVSLDDHSEICDMSHATAYAVHVSRMILKNGLPQDTMLSMNVPKGKPLGLKPCAVTDGRFVDEYMASEDARGNAVYWMTGRQINKGTIEGDLELMHAGYVTLSPIKLNMTSRRYLPVLEELLKRSV","2269663 2268896","TIGR ID: PG2163","survival protein surE (acid phosphatase) (stationary phase survival protein)","Cytoplasm","This sequence is orthologous to CT218.Numerous significant hits in gapped BLAST to survival protein surE; e.g. residues 6-256 are 36% similar to AE004139 of Vibrio cholerae, residues 6-252 are 38% similar to AF117715 of Legionella pneumophila, residues 6-253 are 37% similar to AE006198 of Pasteurella multocida.","
InterPro
IPR002828
Family
Survival protein SurE
PD005378\"[14-240]TSurE
PF01975\"[6-200]TSurE
TIGR00087\"[6-173]TsurE
noIPR
unintegrated
unintegrated
G3DSA:3.40.1210.10\"[6-251]TG3DSA:3.40.1210.10
SSF64167\"[6-254]TSSF64167


","BeTs to 11 clades of COG0496COG name: Survival protein SurE, predicted acid phosphataseFunctional Class: RThe phylogenetic pattern of COG0496 is amt-yqvCe--huj---lin-Number of proteins in this genome belonging to this COG is 1","***** PF01975 (Survival protein SurE) with a combined E-value of 4.2e-26. PF01975A 6-23 PF01975B 72-80 PF01975C 94-107 PF01975D 113-132 PF01975E 167-173","Residues 9-173 are 40% similar to a (PROTEIN SURVIVAL SURE HOMOLOG) protein domain (PD005378) which is seen in O67004_AQUAE.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Jun 7 16:18:19 MDT 2001","Thu Jun 7 16:18:19 MDT 2001","Fri Apr 20 14:56:47 MDT 2001","Fri Apr 20 14:56:47 MDT 2001","Fri Apr 20 14:56:47 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Apr 20 14:56:47 MDT 2001","-55% similar to PDB:1ILV Crystal Structure Analysis of the TM107 (E_value = 1.2E_34);-55% similar to PDB:1J9J CRYSTAL STRUCTURE ANALYSIS OF SURE PROTEIN FROM T.MARITIMA (E_value = 1.2E_34);-55% similar to PDB:1J9K CRYSTAL STRUCTURE OF SURE PROTEIN FROM T.MARITIMA IN COMPLEX WITH TUNGSTATE (E_value = 1.2E_34);-55% similar to PDB:1J9L CRYSTAL STRUCTURE OF SURE PROTEIN FROM T.MARITIMA IN COMPLEX WITH VANADATE (E_value = 1.2E_34);-53% similar to PDB:1L5X The 2.0-Angstrom resolution crystal structure of a survival protein E (SurE) homolog from Pyrobaculum aerophilum (E_value = 1.7E_25);","","","Residues 6 to 194 (E-value = 4.4e-52) place PG1890 in the SurE family which is described as Survival protein SurE (PF01975)","Fri Apr 20 16:58:24 MDT 2001","34541735","","","Li,C., Ichikawa,J.K., Ravetto,J.J., Kuo,H.C., Fu,J.C. and Clarke,S., A new gene involved in stationary-phase survival located at 59 minutes on the Escherichia coli chromosome. Bacteriol. 176 (19), 6015-6022 (1994), PubMed: 7928962.","","Thu Jun 7 16:19:39 MDT 2001","1","","","PG2163" "PG1891","2270218","2269664","555","ATGAAAACGAAAAAGAATATCATCATGGCCCTTGGGCTGATGCTGGTAAACATCTTCCTTGTTTTCTCCTCGTGCGAGAAAAGACCGAATGAGGAAAAACAGCGTCGTCACGACAACGAAGTGGCCTTCAACGCCTATGCGGACAGCACCAACTTCAAGAAAGTATCTGTTGATGGATCGACCGCATACGTTTACATGCGCTGGATAACAAACGGTACGGGTACAGAGCATCCGATCGCCACCTCCCGTGTGGAGGTCCACTACCAAACGTATCGTTTAGTAAGAAATATCATGGTAGATGGAAACTATAACTCCGAAAAGCCGGCACGTATCACACTTTACAGGAATGAGAAGGATAAGTCGATCACCGGCTTCCGTATTGCTTTGCAGAATATGGTTATCGGAGACGAGTGTGAGTTCATCGTCCCCTGGTATTTAGCCTATGGAAGCAAAGGCGTCCCTGCATCGAGCGCAAATCTCGTACCCATCCCCTCCTATTCCGCACTACGTTTTATCGTAAAACTAAGTGGCATTATTCCTGAAGAAGACAAGAAA","10.00","6.62","21037","MKTKKNIIMALGLMLVNIFLVFSSCEKRPNEEKQRRHDNEVAFNAYADSTNFKKVSVDGSTAYVYMRWITNGTGTEHPIATSRVEVHYQTYRLVRNIMVDGNYNSEKPARITLYRNEKDKSITGFRIALQNMVIGDECEFIVPWYLAYGSKGVPASSANLVPIPSYSALRFIVKLSGIIPEEDKK","2270217 2269663","TIGR ID: PG2164","conserved hypothetical protein","Periplasm, Cytoplasm","One weak hit in gapped BLAST; e.g. residues 72-178 are 34% similar to gb|AAF96562.1| peptidyl-prolyl cis-trans isomerase-related protein of Vibrio cholerae. ","
InterPro
IPR001179
Domain
Peptidyl-prolyl cis-trans isomerase, FKBP-type
PTHR10516\"[67-182]TPPIase_FKBP
PF00254\"[72-176]TFKBP_C
PS50059\"[81-179]TFKBP_PPIASE
noIPR
unintegrated
unintegrated
G3DSA:3.10.50.40\"[26-183]TG3DSA:3.10.50.40
PTHR10516:SF17\"[67-182]TPTHR10516:SF17
PS51257\"[1-25]TPROKAR_LIPOPROTEIN
SSF54534\"[1-178]TSSF54534


","BeTs to 4 clades of COG0545COG name: FKBP-type peptidyl-prolyl cis-trans isomerases 1Functional Class: OThe phylogenetic pattern of COG0545 is ----Y--cE--h-----lin-Number of proteins in this genome belonging to this COG is 4","***** IPB001179 (FKBP-type peptidyl-prolyl cis-trans isomerase (PPIase)) with a combined E-value of 9.1e-07. IPB001179A 116-149 IPB001179B 163-175","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Mar 7 12:14:15 MST 2001","Wed Mar 7 12:14:15 MST 2001","Wed Mar 7 12:14:15 MST 2001","Wed Mar 7 12:14:15 MST 2001","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 7 12:14:15 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 72 to 176 (E-value = 1.2e-10) place PG1891 in the FKBP_C family which is described as FKBP-type peptidyl-prolyl cis-trans isomerase (PF00254)","Wed Mar 7 12:14:15 MST 2001","34541736","","","","","","1","","","PG2164" "PG1892","2271762","2270218","1545","ATGGCACAACAGGAAGATCTCTTCAAAAAAATAGTCTCACACTGCAAAGAATACGGCTTCGTCTTTCCTTCGTCCGAGATATACGACGGTCTGGCAGCTGTGTACGACTATGCACAATACGGTTCTGAACTGAAGAACAATATCAAACGCTACTGGTGGGAAAGTATGACCCTGCTGCATGATAATGTGGTGGGCATCGACTCTGCCATCTTCATGCATCCTTCGATCTGGAAAGCTTCGGGACACGTGGATGCGTTCAATGATCCGCTCATAGACAACAAGGATTCCAAAAAGCGTTATCGTGCGGATGTACTCGTGGAGGATCATCTGGCCAAAATAGATGAAAAAATAGCAAAAGAAGTCGCCAAAGCAGCCAAACGCTTCGGCGAGGCATTCGACGAGGCTCAATTCCGAGCCACCAACGCCCGTGTGATCGAATATCAACAGAAGCGAGATCAGATACACGAACGCTTTGCTACTGCACTGAATGACAACAATCTGGAGGAAATCCGTCAGATTATCCTCGACTGCGAGATCGTCTGTCCGATCAGCGGTACGCGTAACTGGACAGAGGTGCGCCAGTTCAACCTGATGTTTGCCACGGAGATGGGCTCTACGGCCGACGGTGCCATGAAGGTATATCTTCGTCCCGAAACGGCTCAAGGCATATTTGTCAATTTCCTGAATGTGCAGAAGACGGGACGAATGAAGATCCCTTTCGGAATTTGCCAGATCGGCAAGGCTTTCCGGAACGAGATCGTAGCCCGTCAGTTCATCTTCCGGATGCGCGAATTCGAACAAATGGAGATGCAGTTCTTCGTACGACCGGGTGAAGAGCTGCAATGGTTCGAGAAGTGGAAAAACCTCCGTATGCAGTGGCACCGCGCCCTCGGCTTCGGAGACGACAAATACCGTTTCCATGATCATGACAAGCTGGCACACTATGCCAATGCTGCCACCGATATTGAGTTCGAGATGCCGTTCGGCTTCAAAGAAGTGGAAGGCATCCATAGTCGGACTGACTTCGATCTCTCTCGCCACGAAGAGTTTAGCGGCAAGAAACTGCAGTATTTCGATCCCGAACAGAACAAGAGCTACGTGCCGTATGTAGTGGAAACCTCCATCGGACTGGATCGGATGTTCCTGACGATTCTCTTCGGATCGTATTGCGAAGAAGAGACTTCCAACGGCGAGATGCGCGTAGTGCTGAAGCTGCCCGCAGCATTGGCTCCCGTGAAGCTGGCCGTACTCCCTCTGGTTCGGAAGGATGGTCTTGATGCGAAGGCTCGGGAGATTGTTCACGACCTCCGTTTCGACTTCGCCTGCCAATACGATGAAAAGGATTCTATCGGCAAACGCTACCGCCGTCAGGATGCAATCGGTACCCCTTTCTGTATCACGGTAGATCACCAATCGCTCGAAGACAATACCGTGACCATCCGCTATCGTGACACGATGGAGCAGGAGCGTGTGGAGATCAGCCGTTTGAATGCTATTATCTCGGAATATGTAAGCCTCAAGAGCTTGCTCAAAAAGATAGACCTA","6.20","-6.90","60065","MAQQEDLFKKIVSHCKEYGFVFPSSEIYDGLAAVYDYAQYGSELKNNIKRYWWESMTLLHDNVVGIDSAIFMHPSIWKASGHVDAFNDPLIDNKDSKKRYRADVLVEDHLAKIDEKIAKEVAKAAKRFGEAFDEAQFRATNARVIEYQQKRDQIHERFATALNDNNLEEIRQIILDCEIVCPISGTRNWTEVRQFNLMFATEMGSTADGAMKVYLRPETAQGIFVNFLNVQKTGRMKIPFGICQIGKAFRNEIVARQFIFRMREFEQMEMQFFVRPGEELQWFEKWKNLRMQWHRALGFGDDKYRFHDHDKLAHYANAATDIEFEMPFGFKEVEGIHSRTDFDLSRHEEFSGKKLQYFDPEQNKSYVPYVVETSIGLDRMFLTILFGSYCEEETSNGEMRVVLKLPAALAPVKLAVLPLVRKDGLDAKAREIVHDLRFDFACQYDEKDSIGKRYRRQDAIGTPFCITVDHQSLEDNTVTIRYRDTMEQERVEISRLNAIISEYVSLKSLLKKIDL","2271866 2270217","TIGR ID: PG2165","glycyl-tRNA synthetase (glycine--tRNA ligase)","Cytoplasm","Numerous significant hits to glycyl-tRNA synthetase (glycine--tRNA ligase) in gapped BLAST; e.g. residues 6-501 are 42% similar to emb|CAB69725.1| glycyl-tRNA synthetase of Streptomyces coelicolor A3(2), residues 4-502 are 43% similar to gb|AAF30905.1|AE002147_6 glycyl-tRNA synthetase of Ureaplasma urealyticum, residues 181-504 and 9-103 are 52% and 58% similar (respectively) to fragments (residues 107-452 and 2-96) of gb|AAC26570.1| glycyl-tRNA synthetase of Treponema pallidum.This sequence is similar to BT3611.","
InterPro
IPR002314
Domain
tRNA synthetase, class II (G, H, P and S)
PF00587\"[44-329]TtRNA-synt_2b
InterPro
IPR002315
Family
Glycyl-tRNA synthetase, alpha2 dimer
PR01043\"[27-41]T\"[193-205]T\"[214-231]T\"[246-263]T\"[263-273]T\"[368-380]T\"[450-469]TTRNASYNTHGLY
PTHR10745\"[217-505]TtRNA-synt_gly
TIGR00389\"[6-504]TglyS_dimeric
InterPro
IPR004154
Domain
Anticodon-binding
G3DSA:3.40.50.800\"[388-504]TAnticodon_bd
PF03129\"[413-503]THGTP_anticodon
SSF52954\"[400-505]TAnticodon_bd
InterPro
IPR006195
Domain
Aminoacyl-transfer RNA synthetase, class II
PS50862\"[151-418]TAA_TRNA_LIGASE_II
noIPR
unintegrated
unintegrated
G3DSA:3.30.930.10\"[4-387]TG3DSA:3.30.930.10
SSF55681\"[4-416]TSSF55681


","BeTs to 9 clades of COG0423COG name: Glycyl-tRNA synthetase, class IIFunctional Class: JThe phylogenetic pattern of COG0423 is amtkY-----r---gpol---Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 397-504 are 46% similar to a (SYNTHETASE AMINOACYL-TRNA LIGASE PROTEIN BIOSYNTHESIS) protein domain (PD000606) which is seen in SYG_TREPA.Residues 9-87 are 59% similar to a (SYNTHETASE GLYCYL-TRNA LIGASE AMINOACYL-TRNA) protein domain (PD005018) which is seen in SYG_TREPA.Residues 330-389 are 52% similar to a (GLYCYL-TRNA SYNTHETASE GLYCINE--TRNA) protein domain (PD169223) which is seen in SYG_TREPA.Residues 197-329 are 59% similar to a (SYNTHETASE AMINOACYL-TRNA LIGASE PROTEIN BIOSYNTHESIS) protein domain (PD000380) which is seen in SYG_BORBU.","","Thu Jun 14 13:09:14 MDT 2001","","Thu Jun 14 13:09:14 MDT 2001","Thu Jun 14 13:09:14 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:09:14 MDT 2001","Thu Jun 14 13:09:14 MDT 2001","","","Wed Mar 7 12:40:42 MST 2001","Mon Dec 22 11:30:16 2003","Wed Mar 7 12:40:42 MST 2001","","Thu Jun 21 09:13:52 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 369-5301 are 27% similar to PG0861, a predicted prolyl-tRNA synthetase.","Mon Jun 25 08:08:07 MDT 2001","Wed Mar 7 12:40:42 MST 2001","-49% similar to PDB:1ATI CRYSTAL STRUCTURE OF GLYCYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS (E_value = 4.7E_85);-52% similar to PDB:1B76 GLYCYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH ATP (E_value = 1.2E_61);-52% similar to PDB:1GGM GLYCYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH GLYCYL-ADENYLATE (E_value = 1.2E_61);-39% similar to PDB:2G4C Crystal Structure of human DNA polymerase gamma accessory subunit (E_value = 3.4E_11);","","","Residues 33 to 301 (E-value = 1.2e-50) place PG1892 in the tRNA-synt_2b family which is described as tRNA synthetase class II core domain (G, H, P, S and T) (PF00587)Residues 413 to 503 (E-value = 1.1e-21) place PG1892 in the HGTP_anticodon family which is described as Anticodon binding domain (PF03129)","Mon Dec 22 11:30:16 2003","34541737","","","Mazauric,M.H., Keith,G., Logan,D., Kreutzer,R., Giege,R. and Kern,D. 1998. Glycyl-tRNA synthetase from Thermus thermophilus--wide structural divergence with other prokaryotic glycyl-tRNA synthetases and functional inter-relation with prokaryotic and eukaryotic glycylation systems. Eur. J. Biochem. 251 (3): 744-757. PubMed: 9490048.","","Wed Mar 7 12:40:42 MST 2001","1","","","PG2165" "PG1893","2273636","2272200","1437","ATGAAAAGAATACAACTAACTCTTATCGCTCTCTTCGCCGCTGTTGCCGGTTTGGTCGCTCAAAATGCTTACGAGGGAGTAATTTCATATAAAATTTCGTTGGACAAAACCGGAAACAAGGTTGTACTGAATGGTGCGGCAGATATGAGTAATTTAAAGCTCAAGAGCACTCAGATGATCATTGTTACGCCTATTCTTCGTTCAGAAGATGGTACCAGCCGGGTGGAATTTCCTTCGGTAGTCATTACAGGCCGCAATAGAACAAAAGCTCTCAAGCGTGAAATCGCATTTAGTTCGGCTTTGCCCCAAGCAAAACATGCAGCTCAATACATTCGCCGTCATAATGGGAAGAGCGAGCAGTTTGCTTTTACAGGAGAACATGCTTATGCATCATGGATGATGGATGCCAAGTTTGTGGTTCGTGAGGAGGTACGAGGTTGTGCTAAATGCCCTGTAGGTCTCTCGAGTAATATTGTTCCTTTTGATCCACTCTTCAATCCGGCAGAGGCTCCTTATTTGTTGGCACACATTACTCCGGCAGAAGAAGTGGAAAAACAGCGAGAGTCCAGCTTCGATGCTTATATCAACTTCAAAGTCAATAAGGCAGATGTCCTTCCTGAGTATCGCAACAATAAGGCGGAGTTAGAGAAAATCAAAGAATTTGTAAGCACCGTTAAGGCTAATCCAAACTATTCGGTCAATAAAATGATCATCGAAGGGTTTGCTTCTCCCGAGGCTTCAATAGCCCACAATAAGGCTTTGTCGGAGCGCCGTGCTAAAAGACTCGCGGAAGAATTGGTGCGTAAGTATGGCAAAACATTGCCGAATATAACCACTGAATTCGGCGGTGAAGATTGGAAGGGGCTGAAACTGGCTATCGAAAAGAGTGATATAGCCGATCGTGACCGCGTATTGGAGATAATCAACTCCGATAAATATGCCGATGATGATGCACGTGAACAGGCTCTGAAGCAACTTTCGTCTTATCGTTATATCTTGGATCAGATCTATCCGAATTTGCGTCGCAATACGATAACCATGGGGTATATCGTTCGTGATTATACCCTCGAAGAAGCTCGTGAAATCATTAAGACTGCTCCGAAAGAACTTAGTGAGGCCGAAATGTACCGTGTGGCAATGTCTTATCCTGAGGGGCACCAAGAGCGTTTGTTTGCTCTGAATACGACCCTTAAGTATTTCCCTGAAAGTGTAACGGGCCGAATCAATTTGGCTGTAGCCGCTTTTAATGGTGGAGACGTTCAACAGGCAATTGCTCTGTTGAGTCCGATTCAGACAGAAAAGGGTGTAAGCAATATCCTTGGAGCTGCTTATGCTCGTACGGGAGATTTTGCTCGTGCCGAAACCTTCTTCCGTAAGGCCGTTGCAGAAGGAGATGCAAATGCGCAGCGCAACCTCGATATGCTGCTTGGCAAAAAG","9.70","8.40","53513","MKRIQLTLIALFAAVAGLVAQNAYEGVISYKISLDKTGNKVVLNGAADMSNLKLKSTQMIIVTPILRSEDGTSRVEFPSVVITGRNRTKALKREIAFSSALPQAKHAAQYIRRHNGKSEQFAFTGEHAYASWMMDAKFVVREEVRGCAKCPVGLSSNIVPFDPLFNPAEAPYLLAHITPAEEVEKQRESSFDAYINFKVNKADVLPEYRNNKAELEKIKEFVSTVKANPNYSVNKMIIEGFASPEASIAHNKALSERRAKRLAEELVRKYGKTLPNITTEFGGEDWKGLKLAIEKSDIADRDRVLEIINSDKYADDDAREQALKQLSSYRYILDQIYPNLRRNTITMGYIVRDYTLEEAREIIKTAPKELSEAEMYRVAMSYPEGHQERLFALNTTLKYFPESVTGRINLAVAAFNGGDVQQAIALLSPIQTEKGVSNILGAAYARTGDFARAETFFRKAVAEGDANAQRNLDMLLGKK","2273665 2272199","Ross, et al.(2001) select PG1893 as one of fifteen vaccine candidate antigens, based on in vitro and in vivo laboratory studies of 120 candidates screened by bioinformatics techniques from the whole W50 genome. Corresponds to the \"secondary fimbrial protein\" reported by Arai et. al. (2000). See also PG1864, PG0916, PG0627. Reported in Genbank AAD33939 gene product is immunoreactive 53 kD antigen PG123, which is reactive with sera from human periodontitis patients and with sera from protected rats.Veith et al. (2002) identified this protein by two-dimensional gel electrophoresis and peptide mass fingerprinting of outer membranes prepared from strain W50. The peptide mass data indicate that the mature N-terminus of this protein is pyroglutamate.TIGR ID: PG2167","possible outer membrane-associated protein P51","Cytoplasm, Periplasm","PG1893 is identical to a previously sequenced P.gingivalis protein in Genbank, AAD33939. Residues 28-475 of PG1893 are 32% similar to a previously sequenced P.gingivalis protein in Genbank, BAA33066.","
InterPro
IPR006665
Domain
OmpA/MotB
PD000930\"[195-260]TOmpA/MotB
PS51123\"[184-311]TOMPA_2
noIPR
unintegrated
unintegrated
G3DSA:3.30.1330.60\"[179-285]TG3DSA:3.30.1330.60
SSF103088\"[190-307]TSSF103088
SSF81901\"[403-472]TSSF81901


","BeTs to 4 clades of COG1360COG name: Flagellar motor protein MotBFunctional Class: NThe phylogenetic pattern of COG1360 is -----Qv-EBrHUJ--OLinxNumber of proteins in this genome belonging to this COG is 5","***** IPB001145 (Bacterial outer membrane protein) with a combined E-value of 2.6e-06. IPB001145B 194-220 IPB001145C 236-271","Residues 28-475 are 32% similar to a (FIMBRILIN) protein domain (PD142733) which is seen in O07074_PORGI.","","Thu Jun 14 13:09:38 MDT 2001","","Thu Jun 14 13:09:38 MDT 2001","Thu Jun 14 13:09:38 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:09:38 MDT 2001","Thu Jun 14 13:09:38 MDT 2001","","Mon Feb 11 12:27:28 2002","Mon Feb 11 12:27:28 2002","Thu Jun 21 09:09:57 MDT 2001","Wed Nov 7 14:32:17 2001","Thu Jun 21 09:06:40 MDT 2001","Thu Jun 21 09:06:40 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 28-475 are 32% similar to PG1864, a 60 kDa protein. Weaker similarities are seen to PG0916, a hypothetical protein (possible immunoreactive antigen).","Thu Jun 21 09:09:57 MDT 2001","Wed Mar 7 13:09:34 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Jun 21 09:06:40 MDT 2001","34541739","Wed Mar 7 13:09:34 MST 2001","See Fimbrillins
Veith,P., Talbo,G., Slakeski,N., Dashper,S., Moore,C.,Paolini,R., Reynolds,E., Major outer membrane proteins and proteolytic processing of RgpA, and Kgp of Porphyromonas gingivalis W50, Biochem J. 2002 (in press).Ross BC, Czajkowski L, Hocking D, Margetts M, Webb E, Rothel L, PattersonM, Agius C, Camuglia S, Reynolds E, Littlejohn T, Gaeta B, Ng A, Kuczek ES, Mattick JS, Gearing D, Barr IG, Identification of vaccine candidate antigens from a genomic analysis of Porphyromonas gingivalis, Vaccine 2001 Jul 20;19(30): 4135-42, PMID: 11457538.Ross,B., Barr,I., Patterson,M., Agius,C., Rothel,L., Margetts,M., Hocking,D. and Webb,E. Porphyromonas gingivalis polypeptides and nucleic acids. Patent: Australia (AU 98/01023)-PCT 10-DEC-1998; CSL Ltd; 45 Poplar Road; R&D; Parkville, Victoria; Australia.Arai M, Hamada N, Umemoto T.Purification and characterization of a novel secondary fimbrial protein from Porphyromonas gingivalis strain 381.FEMS Microbiol Lett. 2000 Dec 1;193(1):75-81.PMID: 11094282","","Mon Feb 11 12:27:28 2002","","1","","","PG2167" "PG1894","2274250","2273684","567","TTGTTGTTTTTGAGTGGGTTGCTTGGTGTATCCGCTCAGCGCGTGGCTCTTAAGAATAATTTGCTTTATGATGCAACGCTAACTCCTAACTTGGCCTTGGAAATAGGTGTAGGTCCTAAAATGACTGTGGATCTCTTAGGGGGAGTAAACCCTTTCAAGATCAGCGATGATCATTATTGGAAGCATTGGCTTGCCCAGCCGGAATTGCGCTATTGGTTCTGTGAGAAATTCAATGGAGTGTGTATCGGACTTCATGGCCATGTCGGTCAAATGAATATCGCAGGGATATCGGTCCCTCCTGTTGGTTCCATTCATCCTAAGAGCGACTTCGACGATGCCAGGTATCATCGTTATCAAGGATGGTTCTATGGCGGCGGTATCAGTATAGGCCGTCAGTGGATCTTGGGCAATCATTGGAATCTGGAAGCGAGTATCGGTGGTGGTTATATTCACTTCGATTATGACAAGTATCAGTGTGTAGAGTGTGGGAAGAAAGTTGGTGTTGACAAGAAGGCCGATTACTTTGGCCTGACGCGAGCCACTCTTTCGTTAATCTATCTGTTTAAG","8.20","3.72","21166","LLFLSGLLGVSAQRVALKNNLLYDATLTPNLALEIGVGPKMTVDLLGGVNPFKISDDHYWKHWLAQPELRYWFCEKFNGVCIGLHGHVGQMNIAGISVPPVGSIHPKSDFDDARYHRYQGWFYGGGISIGRQWILGNHWNLEASIGGGYIHFDYDKYQCVECGKKVGVDKKADYFGLTRATLSLIYLFK","2274249 2273683","TIGR ID: PG2168","hypothetical protein","Cytoplasm","No significant hits in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-17]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Mar 8 11:30:51 MST 2001","Mon Feb 5 16:22:30 MST 2001","Mon Feb 5 16:22:30 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 1-189 have 45% similarity to PG1863, hypothetical protein.","Thu Mar 8 11:30:51 MST 2001","Thu Mar 8 11:30:51 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Mar 8 11:30:51 MST 2001","34541740","","","","","","1","","","PG2168" "PG1894.1","2274572","2274303","270","GTGCAAAGGTCTCATTATACACAACAAACCGAACCTCAGACCAGGAAAGAAACTCGGATTCAGAACGCCGTTCGAATGCTTTTTCCCAAATTCACCTTAGTGTTGCGTTTATTTGTGGAATCTGCAGAATGCGTCAGCCCTGGAATGGGATGTCTAAATCAGTTTTTTTGTGCATCTTTGCCACAAAAAGTAGCTAAGTCTCTTTGGGTTGTATTATTATGTCTTGAAAATAGGTTTTTTGTGGAAAAAAGTGCATGCTTAACATGCAGA","","","10384","VQRSHYTQQTEPQTRKETRIQNAVRMLFPKFTLVLRLFVESAECVSPGMGCLNQFFCASLPQKVAKSLWVVLLCLENRFFVEKSACLTCR","","NO TIGR ID corresponds to this gene.","hypothetical protein","Periplasm, Cytoplasm","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-44]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","","","","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","","","","","","","1","","","" "PG1895","2275212","2275988","777","ATGGAAGAGGTATCTCCCGACCACAGCACCATCAGTCGATTTCGTTCGGCACTGACAGAGTTGGGGCTCATGGACAAACTATTGGCGCAGTTTAACAAACAACTTTCCCGCCATCACATTTCGGTCAGGGAAGGGGTGCTTGTCGATGCAAGCCTTGTGGAGACGCCACACAAACCCAACGGAACCATTACGATTGAAGTTGCAGACGACAGAGAAGACAATCGGAGCGAGGAGGAAAAAGAGGCAGAGGAGGATTATCAAAAACAGGTTGTCCGCCGGCGTAAAGGGACGGATGAAGAAGCCCGTTGGGTGTACAAACAAAAGCGTTATCACTACGGATACAAAAAGCATTGTCCGGCCAATGTTCAAGGCATTGTTCAAAAGGTGATAACGACTGCAGCGAACCGCAGTGACACGAAGGAGTTTATTGCGCTATTGCAGGGTGCAAACATACCTCAAGGTACAGCCGTCTTGGCGGACAAAGGATATGCTTGCGGGGAAAATCGTTCCTACCTGCAAACCCATCACCTTCAAGACGGCATCATGCACAAGGCACAACGCAACAGGGCATTGACCGAGGAAGAGAAGCAAGGAAACAAAGCAATCGGTCCGATACGGAGCACCATCGAACGCACCTTTGGCAGTATTCGGCGGTGGTTTCATGGCGGACGATGTCGATACCGGGGACTTGCCAAGACCCATACTCAAAACATTCTTGAAAGCATCGCCTTTAATTTATACAGAACCCCGGGGATAATTATGTCCTCATCTCTAGGA","10.00","9.52","29473","MEEVSPDHSTISRFRSALTELGLMDKLLAQFNKQLSRHHISVREGVLVDASLVETPHKPNGTITIEVADDREDNRSEEEKEAEEDYQKQVVRRRKGTDEEARWVYKQKRYHYGYKKHCPANVQGIVQKVITTAANRSDTKEFIALLQGANIPQGTAVLADKGYACGENRSYLQTHHLQDGIMHKAQRNRALTEEEKQGNKAIGPIRSTIERTFGSIRRWFHGGRCRYRGLAKTHTQNILESIAFNLYRTPGIIMSSSLG","2275211 2275987","TIGR ID: PG2169","ISPg1 transposase fragment (IS1106-related transposase)","Cytoplasm","PG1895 is aaproximately equivalent to the previously sequenced AB015879 in GenBANK. See also AJ130872. Residues 6-248 are 33% similar to an IS1106 transposase of N.meningitidis (AE002488).","
InterPro
IPR002559
Domain
Transposase, IS4-like
PF01609\"[45-246]TTransposase_11


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 201-259 are 98% similar to a (TRANSPOSASE ORF7 INSERTION SEQUENCE IS1126-LIKE GENE) protein domain (PD187845) which is seen in Q9ZAD0_PORGI.Residues 55-200 are 83% similar to a (TRANSPOSASE PLASMID PROTEIN ELEMENT) protein domain (PD004652) which is seen in Q9ZA61_PORGI.Residues 8-54 are identical to a (TRANSPOSASE ORF7 INSERTION SEQUENCE) protein domain (PD187846) which is seen in Q9ZA61_PORGI.","","","","","","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","","","","Thu Jun 21 09:05:54 MDT 2001","Fri Feb 16 12:11:10 MST 2001","Wed Jan 3 14:15:34 MST 2001","Wed Jan 3 12:20:31 2001","","Thu Jun 21 09:05:21 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1895 is virtually identical to PG1087, PG0763, PG1755, PG0686, PG0756, PG1798, PG1230, PG1919, PG0044, PG0689, PG1215, PG1665, PG0839, PG1184, all ISPg1 fragments that reproduce the middle and C-terminal residues of PG1267, PG0169, PG1050, PG1062, PG0740, PG0918, PG1662, PG1422, PG0420, PG0499, PG1099.Also, partial similarities to PG0732, PG0842, PG0883, PG1231, PG0730, PG1159, PG1608.","Fri Feb 16 12:11:10 MST 2001","Thu Jun 14 13:09:49 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 45 to 246 (E-value = 1.2e-34) place PG1895 in the Transposase_11 family which is described as Transposase DDE domain (PF01609)","Thu Jun 21 09:05:21 MDT 2001","","","Hanley,S.A., Aduse-Opoku,J. and Curtis,M.A.A 55-kilodalton immunodominant antigen of Porphyromonas gingivalisW50 has arisen via horizontal gene transferInfect. Immun. 67 (3), 1157-1171 (1999)Maley,J. and Roberts,I.S.Characterisation of IS1126 from Porphyromonas gingivalis W83: a new member of the IS4 family of insertion sequence elementsMicrobiol. Lett. 123 (1-2), 219-224 (1994)Shibata,Y., Hayakawa,M., Takiguchi,H., Shiroza,T. and Abiko,Y.Determination and characterization of the hemagglutinin-associatedshort motifs found in Porphyromonas gingivalis multiple geneproducts. J. Biol. Chem. 274 (8), 5012-5020 (1999)","Knight,A.I., Ni,H., Cartwright,K.A. and McFadden,J.J.Identification and characterization of a novel insertion sequence, IS1106, downstream of the porA gene in B15 Neisseria meningitidis.Mol. Microbiol. 6 (11), 1565-1573 (1992)","Wed Feb 14 11:48:17 MST 2001","Wed Feb 14 11:48:17 MST 2001","1","","28","PG2169" "PG1895.1","2276016","2276486","471","GTGCAAGCAGCTCCTCAAGGGGGGATTTACAACTACTTTCACTCCTTACTGCCACCCCTTTCACTCGCTCCTTTTATGCGAAGAACTCCTCTTCCCTCCACCTTATTATTTTTCAAAGGTCTCATAATGGAGATCTGTTTGGTCGTTATATCGATGAACGAAGAATCTTTAGGGATGTATTGTCGAATAAGGACGTTCAGATATTTATCGTTGTCACTATTAAATGCTTTGTTTACAGCCCGGTGTGTTCGTTGTTGTCCGAGGATGAAGATCCACCGCTGTTGTTCTATTCGGCTTGACCGAAGAGGCGTAAGGCACATCAAGGACACGCTCGGCACGCTCCATACGGACGCCCTTCAGAGCAGTTTTGACCTTCATACGAGGCATATAGATGACCTTCGCCTTGTCCACGAGCTCCACCGTCACCTTGTCTGCACTATCAACGCCCGAACCGGCCTTCGCCGTATTGCT","","","18098","VQAAPQGGIYNYFHSLLPPLSLAPFMRRTPLPSTLLFFKGLIMEICLVVISMNEESLGMYCRIRTFRYLSLSLLNALFTARCVRCCPRMKIHRCCSIRLDRRGVRHIKDTLGTLHTDALQSSFDLHTRHIDDLRLVHELHRHLVCTINARTGLRRIA","","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No hit found in gapped BLAST.","
noIPR
unintegrated
unintegrated
signalp\"[1-85]?signal-peptide
tmhmm\"[35-53]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Wed Mar 7 11:57:28 MST 2001","","Wed Mar 7 11:57:28 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","PG1895.1 is similar to PG0169.1, a hypothetical protein (ISPg1-related). Residues 1-62 are 70% similar to PG0169.1. Similarites are also seen to PG1086, PG0838, PG1229, PG0885, PG0685, and PG1100, most of which are hypothetical proteins.","Tue Jun 5 14:58:36 MDT 2001","Wed Mar 7 11:57:28 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Jun 5 14:58:36 MDT 2001","","","","","","","1","","28","" "PG1897","2278067","2276781","1287","ATGAATACAACAAAGCAGAACGGAAACTATCTCCTGCCTATTATCATGATGATCGCCCTTTTCGGGATGATCTCTTTTGTTACAGGTTTGGCCAGCCCCATGGGGGTGATTGTCAAAAATCAGTTCCAGACCTCCAACTTTATGGCCACGCTCGGTTACTTTGCCAATTTCATTGCTTATGCATTTATGGGCTACCCTGCGGGGATGCTACTCCAGCGAATCGGTTATAAGCAGACAGCTTTATCCGCCATCGCTGTCGGATTTGTAGGCATAGGAATACAGCTCTTGTCCGGAGAGATGGGTAGCTTCTCTATTTATTTGGTCGGCGCATTTGTTGCCGGTTTCTCCATGTGTATGCTCAATACGGTAGTCAATCCGATGCTCAATACCTTGGGTGGCGGAGGCAACCGCGGTAACCAGCTTATCCAGGTGGGTGGCTCTTTCAATTCGCTGATGGCGACTCTGGTACCCGTGCTCGTGGGTTACTTTATCGGGAGCAACGTTCAGCAGGCCAATATCAAGCAGGCTTATCCCGCTATCATCCTGGCCATGTGTATTTTTGCACTCGCTTTTGTAGTGCTTTATTTCGTCAATATCCCCGAGCCGGCCGCCACGAAAAACAGCAGCACGGAGAAGCTGCCGCATAGTCCTTTTGCTTTTCGCCATTTTGTGTTGGGCACAATAGCCATATTCCTTTATGTGGGGATAGAAGTGAGCATTCAGGATTTTATCAATAAGTATATGACTTCCTCTTTCGATAAAGGTGGCTTGGGCTTTGATGCTACGATCGCCGGCTCTGTGGTTGGGACATATTGGTTCCTGATGCTTATCGGACGTATGATCGGAGCCGCCGTAGGAGCAAAAGTATCCAGTAAGGCTATGCTCACCTTCGTGTCCTCATTAGGAATAATTTTGGTCCTGGCTGCCATCTTCACCCCGATCGGACTACAAGCCTCTATGCCAGTCTTTCGCTCCGATATATCGTTCGGCCTTAACACCATACCGATGAGTATCGTTTTCCTCGTGCTTTGCGGTCTTTGTACTTCCGTCATGTGGGGAGGTATTTTCAACCTCGCAGTGGAAGGTCTCGGGAAATATACCGAATCAGCTTCCGGTTTCTTCATGGTCATGGTTTGCGGTGGAGGGATTTTGCCACTGATCCAAGGTTATTTTGCAGACTGGCTCGGTTATATCAATAGCTATTGGGTAATAGTCGTAGCATTAGTATTCCTACTTTATTATGCTTTGGCAGGCTATCGCAATGTGAATAAGGATATTCCCGTGACT","9.20","6.23","45969","MNTTKQNGNYLLPIIMMIALFGMISFVTGLASPMGVIVKNQFQTSNFMATLGYFANFIAYAFMGYPAGMLLQRIGYKQTALSAIAVGFVGIGIQLLSGEMGSFSIYLVGAFVAGFSMCMLNTVVNPMLNTLGGGGNRGNQLIQVGGSFNSLMATLVPVLVGYFIGSNVQQANIKQAYPAIILAMCIFALAFVVLYFVNIPEPAATKNSSTEKLPHSPFAFRHFVLGTIAIFLYVGIEVSIQDFINKYMTSSFDKGGLGFDATIAGSVVGTYWFLMLIGRMIGAAVGAKVSSKAMLTFVSSLGIILVLAAIFTPIGLQASMPVFRSDISFGLNTIPMSIVFLVLCGLCTSVMWGGIFNLAVEGLGKYTESASGFFMVMVCGGGILPLIQGYFADWLGYINSYWVIVVALVFLLYYALAGYRNVNKDIPVT","2278066 2276780","TIGR ID: PG2170","probable glucose/galactose transporter","Inner membrane, Extracellular","Several significant hits to glucose/galactose transporter in gapped BLAST; e.g. residues 4-396 are 28% similar to gb|AAB58958.1| glucose/galactose transporter of Brucella melitensis biovar Abortus, residues 1-403 are 25% similar to gb|AAF40964.1| glucose/galactose transporter of Neisseria meningitidis MC58, residues 1-403 are 25% similar to emb|CAB83999.1| putative transmembrane hexose transporter of Neisseria meningitidis Z2491, residues 6-395 are 25% similar to gb|AAD06674.1| glucose/galactose transporter of Helicobacter pylori (strain J99).This sequence is similar to BT0371.","
InterPro
IPR011701
Family
Major facilitator superfamily MFS_1
PF07690\"[17-393]TMFS_1
noIPR
unintegrated
unintegrated
PTHR10074\"[11-313]T\"[333-426]TPTHR10074
SSF103473\"[1-424]TSSF103473


","BeTs to 4 clades of COG0738COG name: Fucose permeaseFunctional Class: GThe phylogenetic pattern of COG0738 is ----y---eb-huj-------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 147-396 are 30% similar to a (SUGAR TRANSPORT TRANSMEMBRANE INNER) protein domain (PD017219) which is seen in GLUP_BRUAB.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Mar 7 10:23:11 MST 2001","Tue Dec 2 16:18:31 2003","Wed Mar 7 10:23:11 MST 2001","","Wed Mar 7 10:23:11 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 7 10:23:11 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Fri May 18 17:15:41 MDT 2001","34541741","","","Essenberg,R.C., Candler,C. and Nida,S.K. 1997. Brucella abortus strain 2308 putative glucose and galactose transporter gene: cloning and characterization. Microbiology 143 (Pt 5): 1549-1555. PubMed: 9168605.","","Wed Mar 7 10:23:11 MST 2001","1","","28","PG2170" "PG1898","2279065","2278109","957","ATGGCAAAGATATTGGTGGCATTTAACACCGTGAGCGAGGGGTTCGACCGGCTTACCGCTCGTCACGAAGTGGTTTTCCCGCCCAAAGGGCGCGATTTTACTCAAGAAGAAATAGCAGAGCGTATCGTGGATTGCGATGTTCTCTGTTCCGTATTCGACATTCCGATCGGTAGGGATTTGATTGACAAAGGCCGATCGCTTAAGTTGATCGCTAACTATGCTGTCGGGTACAATAATATCGATGTGACTTATGCAGCATCGAAAGGTATTGTTGTGACGAATACTCCGCGAGCTGTAATAGAACCGACGGCAGATTTGGCTCTGGCTCTGCTTCTAAGCTGTACGCGCCGTATTGCGGAATGGGACAGGCTTTTCCGTCGCGATGGCGAGATGGTGGAACGGGGACGGCTATGTCGTCTTGGAGTCAATCTCTATGGCAAGACGTTGGGCATCATAGGCTTCGGGAATATCGGGGCTGCAGTGGCACGTCGATGCAAAGCTTTTGGCATGAATGTTCTCTACAACAAACGCACTCGACTTAGCGAAGCAGAGGAAAAGGCTCAAGGGATCACCTTTGCGGACAAAGACGACTTGATTCGCCGGGCTGATGTTCTGTCGCTCCACACGCCTTTGACTCCCGAAACGAAACATTTGATCGGAACAGCAGAGCTTTCCATGATGAAACCGACAGCCATCCTGATCAATACGGCTCGTGGTGCCGTAGTGGACGAGCGAGCTTTGGTTGAGGCTCTGCGTGAAAAGCGTATTGCCGCTGCCGGCCTCGATGTCTTCGAGAATAACGATATTCCTTCTCCCGAACTCTTTGCTATGGACAATGTCAGCTTAACGCCTCATGTCGGTACTCAAACTTATGATTCTCGTGTCGAGATGGTACATGAGCTTTGCGATAATGTCCTTGGCTTCCTGCATGGCGATCGTCCGATCAGCCGCGTAAAC","6.80","-0.82","35266","MAKILVAFNTVSEGFDRLTARHEVVFPPKGRDFTQEEIAERIVDCDVLCSVFDIPIGRDLIDKGRSLKLIANYAVGYNNIDVTYAASKGIVVTNTPRAVIEPTADLALALLLSCTRRIAEWDRLFRRDGEMVERGRLCRLGVNLYGKTLGIIGFGNIGAAVARRCKAFGMNVLYNKRTRLSEAEEKAQGITFADKDDLIRRADVLSLHTPLTPETKHLIGTAELSMMKPTAILINTARGAVVDERALVEALREKRIAAAGLDVFENNDIPSPELFAMDNVSLTPHVGTQTYDSRVEMVHELCDNVLGFLHGDRPISRVN","2279064 2278108","TIGR ID: PG2171","dehydrogenase protein (probable glycerate dehydrogenase)","Cytoplasm","Numerous significant hits to dehydrogenase proteins in gapped BLAST; e.g. residues 3-319 are 41% similar to dbj|BAA80834.1| 347aa long hypothetical D-3-phosphoglycerate dehydrogenase of Aeropyrum pernix, residues 1-319 are 40% similar to gb|AAG07283.1|AE004807_2 probable 2-hydroxyacid dehydrogenase of Pseudomonas aeruginosa, residues 14-319 are 43% similar to pir||B75057 glycerate dehydrogenase of Pyrococcus abyssi (strain Orsay).","
InterPro
IPR006139
Domain
D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region
PF00389\"[5-319]T2-Hacid_dh
InterPro
IPR006140
Domain
D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
PF02826\"[108-287]T2-Hacid_dh_C
PS00670\"[198-220]TD_2_HYDROXYACID_DH_2
PS00671\"[227-243]TD_2_HYDROXYACID_DH_3
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.720\"[100-287]TG3DSA:3.40.50.720
PTHR10996\"[1-319]TPTHR10996
SSF51735\"[99-288]TSSF51735
SSF52283\"[3-130]TSSF52283


","BeTs to 6 clades of COG1052COG name: Lactate dehydrogenase and related dehydrogenasesFunctional Class: C,H,RThe phylogenetic pattern of COG1052 is a--KYq-CEBrHuj---l---Number of proteins in this genome belonging to this COG is 2","***** IPB002162 (D-isomer specific 2-hydroxyacid dehydrogenase) with a combined E-value of 4.5e-46. IPB002162B 146-158 IPB002162C 213-264 IPB002162D 274-293","Residues 76-285 are 51% similar to a (NAD DEHYDROGENASE OXIDOREDUCTASE PROTEIN HYDROLASE) protein domain (PD000699) which is seen in O58320_PYRHO.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Mar 22 16:08:05 MST 2001","Wed Feb 14 12:32:53 MST 2001","Wed Feb 14 12:32:53 MST 2001","Thu Mar 22 16:08:05 MST 2001","Wed Feb 14 12:32:53 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 36-311 are 34% similar to PG1060, a predicted dehydrogenase protein. Similarities are also seen to PG1127 and PG1081.","Wed Feb 14 12:32:53 MST 2001","Thu Mar 22 16:08:05 MST 2001","-59% similar to PDB:2DBQ Crystal Structure of Glyoxylate Reductase (PH0597) from Pyrococcus horikoshii OT3, Complexed with NADP (I41) (E_value = 1.3E_63);-59% similar to PDB:2DBR Crystal Structure of Glyoxylate Reductase (PH0597) from Pyrococcus horikoshii OT3, Complexed with NADP (P1) (E_value = 1.3E_63);-59% similar to PDB:2DBZ Crystal Structure of Glyoxylate Reductase (PH0597) from Pyrococcus horikoshii OT3, Complexed with NADP (P61) (E_value = 1.3E_63);-57% similar to PDB:2CUK Crystal structure of TT0316 protein from Thermus thermophilus HB8 (E_value = 6.5E_52);-56% similar to PDB:1WWK Crystal structure of phosphoglycerate dehydrogenase from Pyrococcus horikoshii OT3 (E_value = 9.6E_48);","","","Residues 2 to 97 (E-value = 4.9e-20) place PG1898 in the 2-Hacid_dh family which is described as D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain (PF00389)Residues 103 to 285 (E-value = 4.9e-67) place PG1898 in the 2-Hacid_dh_C family which is described as D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain (PF02826)","Thu Mar 22 16:08:05 MST 2001","34541742","","","","","","1","","28","PG2171" "PG1899","2280030","2279287","744","ATGAATAAAAAAACAAAAAGAAATATGAGGAAAATCTTTATCAGCATCGCATTGTTGGCAGGTTTCATTGCTGCTCTCAATGCACAAGTTGTGATCAAGGTGGGAGATGCCATCTTGGAAAACAATGCCACTGTGGACATTACTGCTTTCACAACAGAAGATGGTACGGAAGAGATGAAATTTGAAGGAATGGTTATCAACCAATCCGCTACACCTATCAATGTAATCGGCAAGATTACCAAGCAAGAAATGATCGGTGATGGACACTTTGCTTTGTGCTTTGGTCAGTGTATGGGGCCGAATGTATCTGTATCCCCCATTGTGGAGGCTCTTGATGGTGAAGGAGAGTACGTCTCTTTGCATTATAAATTTCCCGTGTCCAATGAAGGGCATACGGGAGCTTTCACTTTTAGCTGCTTCCCCGAGAGTGGTGCTCCCGGCACAGAATTGGCTACAGTGAACATTAACTTCAAGTACAAAGGCGGTGGAACCGGTTTGACTAATATCGGGCTAGGGCGTATAGCTCTTATCCAGAGCGGTAATACTTGCACCCTTCAGTACAACAGCAATGGCAAGCGTCTTGCCCTTGAAGTGTACAATCTCTTAGGCGTAAAGGTATTTACCTCTCAGCTGCCCGCAGGATCCGGCTCTTATACGCTGCCGGTGCGTCTGCAGCGTGGTGTGCATATCTTCCGCATCACAGAAGGAGGTAAGCCTGCGTTTGTTCAGAAGTATCTGATTAAG","8.80","4.77","26632","MNKKTKRNMRKIFISIALLAGFIAALNAQVVIKVGDAILENNATVDITAFTTEDGTEEMKFEGMVINQSATPINVIGKITKQEMIGDGHFALCFGQCMGPNVSVSPIVEALDGEGEYVSLHYKFPVSNEGHTGAFTFSCFPESGAPGTELATVNINFKYKGGGTGLTNIGLGRIALIQSGNTCTLQYNSNGKRLALEVYNLLGVKVFTSQLPAGSGSYTLPVRLQRGVHIFRITEGGKPAFVQKYLIK","2280029 2279286 [Shorter 2472 393 99]","TIGR ID: PG2172","hypothetical protein","Outer membrane, Cytoplasm, Extracellular","This sequence corresponds to gi:34398061 in Genbank.","
noIPR
unintegrated
unintegrated
signalp\"[1-28]?signal-peptide
tmhmm\"[12-32]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon Feb 5 16:19:59 MST 2001","Wed Mar 9 16:01:34 2005","Mon Feb 5 16:19:59 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 9 16:01:34 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541743","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Wed Mar 9 16:01:34 2005","","1","","28","PG2172" "PG1901","2280906","2280037","870","ATGAAAAAGCTATTTCTCTCGCTCACGAGTCTTGTAATGGTCTTCGCTGTTGCAAGTTGCGATATAATCGACAAGGATCAAACCCTCTTGCCGGCTCCGACCAATGTGACACCCGATAATCCGGATGACAATCCTTCGGAGATCGACATTACGCAGACGCACACAGAAAAATATGTTTTGGCTGAAGAATTTACCGGCCAAAAATGTCTCAACTGTCCGAAAGGTCATCGCAAACTGGCGGCTCTCAAGGAGCAATACGGTAAGAGATTGACTGTTGTCGGTATACATGCCGGCCCTGGATCTCTCGTGCCACCTCTTTTCCGTACAGAAGCCGGAGACGCATATTATAGCAAGTTCGCCAATAATACCCCTCTCCCTGCGCTGATGGTTTCGCGCAAAAAGTTCGGCTCTTCCTACGTTTATGATAAGAGCTACAAAACGTGGGACGTGCCTATTGCCGAGCAGATGGAGCAAAAGGCGAAGATCAATATCTTTGCCGTGGCCGAATACACCGATACCCAAAAGATCAAGGTGACTGTAAAGGGTAAAATACTGGAGGGGAATACACTCCCGAAGTCCATGGTTCAGGTGTATCTGTTGGAGGATAAGCTGATCGCTCCGCAGGTGGATGGCAATACGACAGTCGAGAATTACGAGCACAATCACGTGTTGCGTGGAGCCGTTAATGGTATTTGGGGCGAAGAATTTGTGAATCTCAAAGATTATTTGTATACTTACGCCGTTGAACCGCTCTCGGGTATGTCCTTCGTAGCCGAGAATTATTCGATTGTGGCTTTTGTATACGATGTGCAGACGTTCGAAGTGTATGACGTTGTGCATGTAAAGATCAATCCGCAATCCGATGGCAAA","6.00","-3.69","32403","MKKLFLSLTSLVMVFAVASCDIIDKDQTLLPAPTNVTPDNPDDNPSEIDITQTHTEKYVLAEEFTGQKCLNCPKGHRKLAALKEQYGKRLTVVGIHAGPGSLVPPLFRTEAGDAYYSKFANNTPLPALMVSRKKFGSSYVYDKSYKTWDVPIAEQMEQKAKINIFAVAEYTDTQKIKVTVKGKILEGNTLPKSMVQVYLLEDKLIAPQVDGNTTVENYEHNHVLRGAVNGIWGEEFVNLKDYLYTYAVEPLSGMSFVAENYSIVAFVYDVQTFEVYDVVHVKINPQSDGK","2280905 2280036 [Shorter 2472 858 99]","TIGR ID: PG2173","outer membrane protein","Periplasm","PG1901 has been previously sequenced in P.gingivalis, strain W50,and as AAD51843 in GenBank submitted by Margetts,M., Moore,C., Slakeski,N., Ross,B. and Reynolds,E.C.","
InterPro
IPR012336
Domain
Thioredoxin-like fold
SSF52833\"[1-97]TIPR012336
noIPR
unintegrated
unintegrated
PS51257\"[1-20]TPROKAR_LIPOPROTEIN


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Feb 13 10:54:50 MST 2001","Tue Feb 13 10:54:50 MST 2001","Tue Feb 13 10:54:50 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri May 18 17:40:57 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Fri May 18 17:40:57 MDT 2001","34541744","Tue Feb 13 10:54:50 MST 2001","Margetts,M., Moore,C., Slakeski,N., Ross,B. and Reynolds,E.C., Characterization of a Porphyromonas gingivalis W50 gene encoding a 28kDa outer membrane protein, Omp28, Unpublished.","","Tue Feb 13 10:54:50 MST 2001","","1","","28","PG2173" "PG1902","2282671","2280929","1743","ATGATCCGCAAGTTGATCTTACTGCTTGCTCTGATGCCGGTAGCCTCTGTGGCTTTTGCGGTACCAACGGACAGCACGGAATCGAAAGACAATCGTATCCTTACAAGCATGCAATCCTCCTCTTTGAATAGGGATGATGCTCCGGATAAATGGCAACCTATGCATGCCAATTTCAGTATTCAGAGCGATATGCTGCTTTCTACTGCCCAAAAGTCCAAGAACACCTGGTTCGGCAACTCCTATATCATGGGTATAATCAAGAACAATTATCTGGAGTTTGGTGCCCGTTTCGAGGATCTCTATAAGCCCCTGCCCGGACATGAACCCGAGATGAGGCGTGGCGTTCCTCACATGTATGTGAAGGGAAGCTATCATTGGGCGGAGCTGACTATGGGAGACTTCTACGATCAGTTCGGTAGCGGTATGGTATTCCGCACCTATGAAGAGCGCAACCTCGGTATAGACAACGCGGTTCGCGGCGGACGTATAGTACTCACTCCTTTTGATGGAGTGCGTGTCAAGGGTATTGCAGGACAGCAGCGTAACTACTTCGACCGCACGGGCAAGGTATTCAATTCCGGCCGAGGCTACCTACTGGGTTCTGATCTGGAGCTGAATGTAGAGCGTTGGAGCAGTGCCATGCGCGACAATGACTATCATTTGGCTATCGGGGGATCGTTCGTTTCCAAACACGAAGCAGACGAAGATATATTTGTGGGTGTAGGCGAAGATCGCAAGCGACTCAACCTGCCGCTCAATGTCCCGATTATGGGCCTGCGCACCAACTTTCAAAAAGGAGGTCTCGCCCTCTACGCAGAGTATGGATACAAATACAACGATCCCTCGGCAGACAATGACTATATCTACCACGACGGACAGGCTGCACTCCTCTCTGCCTCATACTCCAAAAAAGGGATGAGTATCCTGTTGCAGGCCAAACGTTGTGAGAACTTTGCTTTCCGCAGCAAGCGAAGTGCCCAGCTCACACCGCTTATGATCAACTATATGCCGGCTTTTACCCAAGCTCACACTTATACGCTGGCGGCCATCTACCCCTATGCTACTCAGCCTCAGGGAGAATGGGCTTTCCAAGGTGAACTGCGTTACAACTTTGCTCGCCGGACAGCTCTCGGTGGACGCTACGGTACCGGCTTGCGTATCAACGTTTCGCATGTGCGTGGTCTGGACAAAAAGATGCTCAAAGAGAATCCCGACGAACTGATCGGAACGGATGGCTACACCGTTTCTTTCTTCGGCATGGGCGACCTCTATTATTCGGATATAGATGTGGAGATTACTAAAAAGGTAAGCCCAGGATTCAACTTTACGCTCACCTACTTGAATCAGATCTACAATAACAAGGTACTGCACGGTGCAGCCGGAGAGAAGCCTGAGAAGATCTATGCCAATATCTTCGTCTATGATGGTAAGTATAAGCTGAGTAATAAGGTAGCCCTCCGTACCGAACTGCAATATTTGCACACGAAGCAGGATCAGGGTGACTGGATCTACGGCATGGCCGAGCTCTCTATCCTGCCTTCTCTGATGCTTTCCCTCTCGGAGCAGTATAATATCGGAGAGACCAAGAAACATTATGTCATGGGGTCTGTCACCTATACTCACGGAGCACATCGAGTAGCTTTCTCTGCAGGCAAAACCCGTGCAGGGATGAACTGCTCGGGAGGTGTATGTCGTGTGGTCCCTGAGACTCAGGGATTCTACCTTTCTTATAGCACCAATCTG","9.50","10.26","65469","MIRKLILLLALMPVASVAFAVPTDSTESKDNRILTSMQSSSLNRDDAPDKWQPMHANFSIQSDMLLSTAQKSKNTWFGNSYIMGIIKNNYLEFGARFEDLYKPLPGHEPEMRRGVPHMYVKGSYHWAELTMGDFYDQFGSGMVFRTYEERNLGIDNAVRGGRIVLTPFDGVRVKGIAGQQRNYFDRTGKVFNSGRGYLLGSDLELNVERWSSAMRDNDYHLAIGGSFVSKHEADEDIFVGVGEDRKRLNLPLNVPIMGLRTNFQKGGLALYAEYGYKYNDPSADNDYIYHDGQAALLSASYSKKGMSILLQAKRCENFAFRSKRSAQLTPLMINYMPAFTQAHTYTLAAIYPYATQPQGEWAFQGELRYNFARRTALGGRYGTGLRINVSHVRGLDKKMLKENPDELIGTDGYTVSFFGMGDLYYSDIDVEITKKVSPGFNFTLTYLNQIYNNKVLHGAAGEKPEKIYANIFVYDGKYKLSNKVALRTELQYLHTKQDQGDWIYGMAELSILPSLMLSLSEQYNIGETKKHYVMGSVTYTHGAHRVAFSAGKTRAGMNCSGGVCRVVPETQGFYLSYSTNL","2282670 2280928","TIGR ID: PG2174","hypothetical protein","Outer membrane, Extracellular","This sequence corresponds to gi:34398063 in Genbank.","
noIPR
unintegrated
unintegrated
signalp\"[1-20]?signal-peptide
tmhmm\"[5-23]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Feb 13 11:09:09 MST 2001","Thu Mar 10 08:14:21 2005","Tue Feb 13 10:59:23 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 10 08:14:21 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541745","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Thu Mar 10 08:16:05 2005","","1","","28","PG2174" "PG1903","2283209","2282730","480","ATGAAATGCTTCTTTATTGCCCTGATTGGGCTGTTGTTCAGTCTGAATACATATGCTCAGCTTCCGGCCGTTAGTTTGAAAAATATCGAAGGAAAAACGGTACAGACCAACAAGTTGGAGAATGCCGGAAAGCCGATGATCATCAGCTTTTTTGCTACGAACTGCAAGCCCTGTTTGCGCGAGCTGAAAGCCATTCAGGAGGTATATGCAGATTGGCAGGACGAGACGGGCGTAAGGCTTATAGCTGTATCTATCGATGAGGGGCAAAATGCACAGAAGGTGAAACCTCTGGCTGACGGCAACGGCTGGGAATACGAAGTGCTGCTCGACAGCAACGGTGATTTCAAACGTGCCATGAACGTTTCCCTCATTCCGGCTGTATTTATTGTCGACGGCAACGGCAAGATAGTATACAACCATACTGGTTATACAGAAGGCGGAGAAGCCGAGCTAATCAAAAAAGTTCGAGAGCTGGTGAAG","6.00","-0.91","17698","MKCFFIALIGLLFSLNTYAQLPAVSLKNIEGKTVQTNKLENAGKPMIISFFATNCKPCLRELKAIQEVYADWQDETGVRLIAVSIDEGQNAQKVKPLADGNGWEYEVLLDSNGDFKRAMNVSLIPAVFIVDGNGKIVYNHTGYTEGGEAELIKKVRELVK","2283208 2282729 [Shorter 2476 420 99]","TIGR ID: PG2175","probable thioredoxin","Cytoplasm, Periplasm, Inner membrane","Residues 26-160 have 28% similarity to B. halodurans cytochrome c biogenesis (thioredoxin), AP001512.Residues 5-136 have 30% similarity to B. subtilis thioredoxin related protein ykvV, Z99111. ","
InterPro
IPR000866
Domain
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
PF00578\"[20-139]TAhpC-TSA
InterPro
IPR011594
Domain
Thioredoxin-like
PD003679\"[65-158]TThioredoxin_like
InterPro
IPR012335
Domain
Thioredoxin fold
G3DSA:3.40.30.10\"[1-160]TThioredoxin_fold
InterPro
IPR012336
Domain
Thioredoxin-like fold
SSF52833\"[1-160]TIPR012336
noIPR
unintegrated
unintegrated
PTHR10681\"[15-158]TPTHR10681


","BeTs to 6 clades of COG0526COG name: Thiol-disulfide isomerase and thioredoxinsFunctional Class: O,CThe phylogenetic pattern of COG0526 is AMTkYQVCEBRHUJgpoLINXNumber of proteins in this genome belonging to this COG is 7","No significant hit to the Blocks database.","Residues 22-142 are 24% similar to a (PROTEIN REDOX-ACTIVE CENTER) protein domain (PD003679) which is seen in Q9ZC57_YERPE.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Fri May 18 17:52:13 MDT 2001","Tue Feb 13 11:24:47 MST 2001","Tue Feb 13 11:24:47 MST 2001","","Tue Feb 13 11:24:47 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1903 shows weak similarities to PG1431, a cytochrome c biogenesis protein CycX homolog. Residues 25-137 are 25% similar to PG1431.","Tue Jun 5 15:00:43 MDT 2001","Fri May 18 17:50:28 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Fri May 18 17:52:13 MDT 2001","34541746","","","","","","1","","28","PG2175" "PG1905","2284438","2283311","1128","ATGTATCATTCTCTATTTGAAAGCCTCTGCATGGTTCCGGACCCACGGATAGAGCGTAAAAAAATTTATCCTCTTGATTTTTTACTGCTGATCGTTTTCCTCTCTACACTCTCAGGCAATACCTCTTGGTATGAGATTGAAGATTATGCCGAGGAATACGAAGAAGAATTGAAAAGTCTATACGAAATGCTTACCGGCCATCAGCTTATGCATACCATGCCTTCTCATGATACTCTCAACAGGAGCATCAGTCTGTTGGATGTAGAAGCTTTTGAGGGGGCTTATAAGCGATGGATTGAAGGCTTTATCTCGGCCACTTCGGGTAAACATATTTGCATTGATGGCAAGACGATGCGGGGAGTGAAGAAACTCTCTTTCGATACACAATCCCATGTCGTCTCTGCCTTTTCACCACAAGATATGTGCAGTCTTGCCCAACTCTACATCGACCGAAAAACAAACGAAATACCGGCTATACATCAACTTCTTGATTTGCTTGACTTGAACGGGGCTGTTGTCTCCATTGATGCCATAGGTACACAAACTGCCATTGCCGAACAAATTATCGATAAGGGCGGAAACTATGTATTGTGTGTTAAAGCGAATCAAAGTTTGAGTCTGCAAGAGATTGAAGCCTATTTCTGCCCTCTTTTTCAGAAACATATCCTCCTTGACGAACAGACGGAACTATCTCACGGACGCATAGAAACACGTCGCTATGAAAGTATTCTCAATCCCTTGGAGATAGAAGCCAACGAGGTATTAACTCGCTGGAAAGGCTTGAGGTCGATACACAAAGTTGTACGCAAACGAAGGGATAAAAAGAGTGACAAAACGAGTGAAGAAGTGGCCTACTACATTTCGTCATTAACAGATGTTTCTTCATTGAAACAAGCTATTCGTGGGCATTGGGCGATAGAGAATAAGTTACACCACTGTTTGGATGTCTATTTCGGACACGATGCCTCGCACAAGAGAACGAGGAATGTGGCGCAGATTATGGATATCATTCAAAAGATTAATTTACTCATTATAGAGAGACTAAAAACGAATATGAAGTCCTCAATCCCTCGCATCCAAAAGAAACTGGCTCGAATGAAGCCACAACAACTAATCACAATACAATTT","7.40","2.35","43313","MYHSLFESLCMVPDPRIERKKIYPLDFLLLIVFLSTLSGNTSWYEIEDYAEEYEEELKSLYEMLTGHQLMHTMPSHDTLNRSISLLDVEAFEGAYKRWIEGFISATSGKHICIDGKTMRGVKKLSFDTQSHVVSAFSPQDMCSLAQLYIDRKTNEIPAIHQLLDLLDLNGAVVSIDAIGTQTAIAEQIIDKGGNYVLCVKANQSLSLQEIEAYFCPLFQKHILLDEQTELSHGRIETRRYESILNPLEIEANEVLTRWKGLRSIHKVVRKRRDKKSDKTSEEVAYYISSLTDVSSLKQAIRGHWAIENKLHHCLDVYFGHDASHKRTRNVAQIMDIIQKINLLIIERLKTNMKSSIPRIQKKLARMKPQQLITIQF","2284437 2283310","Note BLAST similarities to E.coli and V.cholerae proteins.Member of IS5 family of elements.TIGR ID: PG2176","ISPg2 (PGIS2) transposase","Cytoplasm","PG1905 is equivalent to the previously sequenced gb|AAC45368.1 in GenbBANK. Residues 4-364 are 32% similar to an uncharacterized sequence from E.coli 0157:H7 (AE005200). Residues 11-358 are 31% similar to the RfbQRSO22-3 sequence of V.cholerae (AF004383).","
InterPro
IPR002559
Domain
Transposase, IS4-like
PF01609\"[110-344]TTransposase_11


","No hit to the COGs database.","***** PF01811 (Transposase) with a combined E-value of 2e-24. PF01811A 0-35 PF01811B 36-52 PF01811E 134-181 PF01811F 183-207","Residues 132-264 are identical to a (PROTEIN TRANSPOSASE REGION PUTATIVE) protein domain (PD004339) which is seen in P95492_PORGI.Residues 332-376 are identical to a (PUTATIVE TRANSPOSASE) protein domain (PD054580) which is seen in P95492_PORGI.Residues 279-331 are identical to a (PROTEIN TRANSPOSASE PUTATIVE REGION) protein domain (PD004012) which is seen in P95492_PORGI.Residues 1-131 are 83% similar to a (PUTATIVE TRANSPOSASE) protein domain (PD103322) which is seen in P95492_PORGI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Thu Feb 8 13:10:47 MST 2001","Thu Feb 8 11:17:27 MST 2001","Thu Feb 8 11:46:34 MST 2001","Thu Feb 8 11:17:27 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","PG1905 is identical to PG1522, PG1185, PG0775 and PG0249, all predicted ISPg2 elements. PG1905 is similar to PG0943 and weakly similar to PG1058, PG0889, PG1795 and PG1855.","Thu Feb 8 11:40:49 MST 2001","","No significant hits to the PDB database (E-value < E-10).","","","Residues 110 to 344 (E-value = 5.8e-39) place PG1905 in the Transposase_11 family which is described as Transposase DDE domain (PF01609)","","34541747","","Wang,C.Y., Bond,V.C. and Genco,C.A.Identification of a second endogenous Porphyromonas gingivalisinsertion element. J. Bacteriol. 179 (11), 3808-3812 (1997)","","Thu Feb 8 13:10:47 MST 2001","","1","","28","PG2176" "PG1906","2286597","2285362","1236","ATGAGTACAGTAATTATTGCCAGTGCAGTCGTATTCCTGCTGCTCACGCTGATTTTGGTTGTCGCTCTGCTTTATGCCAAGAGCAAATTGGTGCCTTCCGGCAATGTGACGATCACCGTGAACGACGAACGCAAGATGGAAGTACCTCTTGGCGGTACCTTGTTGAATACGCTTCAAAATCAGGGAGTATTCCTTTCTTCGGCTTGCGGCGGTGGCGGAAGCTGCGGTCAGTGTCGTTGCCGTGTAGTGGAAGGAGGTGGCGAAATCCTTCCGACGGAGAAGGGATTTTTCTCTCGCAAAGAACAAAAGGATCATTGGCGACTTTCATGTCAGACAAAAGTAAAGGAGGATCTTAGCATCGTTATTCCCGAAGAGGTATTCGGTGTGAAAGAATGGGAGTGTGAAGTTCTCTCCAATAAGAATGTCTCCACTTTCATCAAAGAATTTGTGGTGAAGCTGCCCGAAGGCGAGACTATGAACTTCAAGAGCGGTAGCTATGCCCAGATCAAGATACCGAAATACAACATCCGCTATGCCGACTACGATATTCAGGATCGCTTCCGTGGCGACTGGGACAAGATGGATGCGTGGTCATTGACTTGTAAGAACGAAGAAGAGACCGTTCGTGCCTATTCAATGGCCAACTATCCGGCTGAAGGCAACATCATTACGCTCAACGTTCGTATCGCGACTCCTCCATTCGACAGAGCTGCCAATAAGTGGAAGGCCGGTATCAAGCCCGGTATTTCCTCCTCATATATTTTCTCGCTAAAACCCGGAGATAAGGTGATGATGAGTGGCCCGTATGGGGACTTCCATATTCAGGACACGGATGCCGAGATGCTTTACATTGGTGGTGGTGCCGGTATGGCTCCTCTACGTGCACAGATTCTGCATCTCTTCCGTACACTGAAGACCGGTCGTAAGGTCTCCTATTGGTATGGTGCCCGCTCCAAAAACGAGATTTTCTATGAAGAAGACTTCCGCGAGATAGAGAGAGAATTTCCGAACTTCAAGTTCCATATCGCTCTTTCCGATCCTCAACCGGAAGATAACTGGACAGGCTATGTGGGCTTTATCCACCAAGTGATCTATGACAACTATCTGAAGGATCACGATGCTCCGGAAGATATAGAATACTATATGTGCGGCCCGGGTCCTATGGCCAATGCAGTGAAAGGTATGCTGGAGAACCTTGGTGTACCGCGCAATATGCTCTTTTTCGATGATTTCGGA","5.60","-5.90","46402","MSTVIIASAVVFLLLTLILVVALLYAKSKLVPSGNVTITVNDERKMEVPLGGTLLNTLQNQGVFLSSACGGGGSCGQCRCRVVEGGGEILPTEKGFFSRKEQKDHWRLSCQTKVKEDLSIVIPEEVFGVKEWECEVLSNKNVSTFIKEFVVKLPEGETMNFKSGSYAQIKIPKYNIRYADYDIQDRFRGDWDKMDAWSLTCKNEEETVRAYSMANYPAEGNIITLNVRIATPPFDRAANKWKAGIKPGISSSYIFSLKPGDKVMMSGPYGDFHIQDTDAEMLYIGGGAGMAPLRAQILHLFRTLKTGRKVSYWYGARSKNEIFYEEDFREIEREFPNFKFHIALSDPQPEDNWTGYVGFIHQVIYDNYLKDHDAPEDIEYYMCGPGPMANAVKGMLENLGVPRNMLFFDDFG","2286596 2285361","This gene belongs to a conserved gene cluster, PG1906-PG1911, on the negative strand which is repeated on the positive strand at PG0275-PG0281. The similarity of PG0281 to PGPG1907, PG0280 to PG1908 and PG0278 to PG1910 suggests preservation of gene order. Rho independent terminators have been located on the appropriate strand immediately downstream of PG0281 and PG1906. The location of these terminators, similarity of gene function, and short (<42 bp) intergenic spaces suggest that these clusters may be operons.TIGR ID: PG2177","Na+-translocating NADH-quinone reductase (possible phenolhydroxylase component)","Cytoplasm, Periplasm, Inner membrane","Numerous significant hits in gapped BLAST; e.g. residues 26-412 are 53% similar to gb|AAG06382.1|AE004724_11 Na+-translocating NADH:quinone oxidoreductase, subunit Nqr6 of Pseudomonas aeruginosa, residues 25-412 are 52% similar to emb|CAB84030.1| putative Na(+)-translocating NADH-ubiquinone reductase subunit F of Neisseria meningitidis Z2491, residues 25-412 are 52% similar to gb|AAF95434.1| NADH:ubiquinone oxidoreductase, Na translocating, beta subunit of Vibrio cholerae.This sequence is similar to BT1155.","
InterPro
IPR001041
Domain
Ferredoxin
PF00111\"[38-116]TFer2
PS51085\"[34-126]T2FE2S_FER_2
SSF54292\"[32-130]TFerredoxin
InterPro
IPR001433
Domain
Oxidoreductase FAD/NAD(P)-binding
PF00175\"[282-394]TNAD_binding_1
InterPro
IPR001709
Domain
Flavoprotein pyridine nucleotide cytochrome reductase
PR00371\"[209-216]T\"[248-257]T\"[282-301]T\"[320-331]TFPNCR
InterPro
IPR008333
Domain
Oxidoreductase FAD-binding region
PF00970\"[251-274]TFAD_binding_6
InterPro
IPR010205
Family
NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit
TIGR01941\"[5-412]TnqrF
InterPro
IPR012254
Family
Methane/phenol monooxygenase/ferrodoxin-NAD+ reductase [2Fe-2S]-component
PIRSF000044\"[36-412]TCis_Diol_DH_RD
InterPro
IPR012675
Domain
Beta-grasp fold, ferredoxin-type
G3DSA:3.10.20.30\"[41-126]TFerredoxin_fold
noIPR
unintegrated
unintegrated
G3DSA:2.40.30.10\"[128-269]TG3DSA:2.40.30.10
G3DSA:3.40.50.80\"[270-411]TG3DSA:3.40.50.80
PTHR19370\"[279-407]TPTHR19370
PTHR19370:SF3\"[279-407]TPTHR19370:SF3
SSF52343\"[267-409]TSSF52343
SSF63380\"[106-274]TSSF63380


","BeTs to 11 clades of COG0543COG name: 2-Octaprenylphenol hydroxylase and related flavodoxin oxidoreductasesFunctional Class: H,CThe phylogenetic pattern of COG0543 is amtKYQV-EbRh-----lin-Number of proteins in this genome belonging to this COG is 3","No significant hit to the Blocks database.","Residues 216-299 are 63% similar to a (REDUCTASE OXIDOREDUCTASE FAD FLAVOPROTEIN NADP HEME NAD) protein domain (PD000183) which is seen in Q56584_VIBAL.Residues 319-419 are 64% similar to a (REDUCTASE OXIDOREDUCTASE FLAVOPROTEIN FAD NAD NITRATE) protein domain (PD011281) which is seen in O05012_HAEIN.Residues 301-419 are 37% similar to a (UBIQUINONE PHENOLHYDROLASE/NADH OXIDOREDUCTASE HYDROLASE) protein domain (PD160461) which is seen in Q9Z723_BBBBB.Residues 131-202 are 51% similar to a (UBIQUINONE OXIDOREDUCTASE SUBUNIT PHENOLHYDROLASE/NADH) protein domain (PD037063) which is seen in Q56584_VIBAL.Residues 43-127 are 35% similar to a (IRON-SULFUR FERREDOXIN ELECTRON TRANSPORT CHLOROPLAST) protein domain (PD000232) which is seen in O05012_HAEIN.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Thu Dec 4 10:50:28 2003","Fri Jan 19 15:41:12 2001","Thu Dec 4 10:50:28 2003","Fri Jan 19 15:41:12 2001","","Wed Mar 28 12:46:31 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 28 12:46:31 MST 2001","-46% similar to PDB:1KRH X-ray Stucture of Benzoate Dioxygenase Reductase (E_value = 3.7E_13);-40% similar to PDB:1CQX Crystal structure of the flavohemoglobin from Alcaligenes eutrophus at 1.75 A resolution (E_value = 3.1E_12);-45% similar to PDB:1TVC FAD and NADH binding domain of methane monooxygenase reductase from Methylococcus capsulatus (Bath) (E_value = 7.7E_11);-45% similar to PDB:2BMW FERREDOXIN: NADP+REDUCTASE MUTANT WITH THR 155 REPLACED BY GLY, ALA 160 REPLACED BY THR, LEU 263 REPLACED BY PRO, ARG 264 REPLACED BY PRO AND GLY 265 REPLACED BY PRO (T155G-A160T-L263P-R264P-G265P) (E_value = 1.3E_10);","","","Residues 38 to 116 (E-value = 3.7e-14) place PG1906 in the Fer2 family which is described as 2Fe-2S iron-sulfur cluster binding domain (PF00111)Residues 278 to 395 (E-value = 9.2e-20) place PG1906 in the NAD_binding_1 family which is described as Oxidoreductase NAD-binding domain (PF00175)","Thu Dec 4 10:50:28 2003","34541748","","","","","","1","","","PG2177" "PG1907","2287230","2286619","612","ATGGATTACATAAGTATGTTTGTCCGCTCGATATTCGTGGACAATATGGTTTTTGCCTACTACTTGGGAATGTGTTCTTTCTTGGCCGTTTCCAAGAATGTGAAGACCTCTATCGGACTCGGAGCTGCCGTGACTTTCATCTTGGTCTGCACCTTGCCCATCAACTATCTGTTACAGAACTATATTTTCAAGGCCGGTGCTCTTTCTTGGCTCGGATCCCAATATGCCGAAGTGGATCTGAGCTTCCTCTCACTGATCATCTTTATCGCGGTGATTGCATCCTTTACGCAGCTCGTGGAAATGGTGGTGGAGAGATTCAGCCCCTCCCTCTATGCTTCGCTGGGTATCTTCCTTCCCTTGATCGCGGTGAACTGCGCGATCCTCGGAGGATCGCTTTTCATGCAGCAGCGTGAGTTTATCAATGTCGGGATGGCTACCGTCTATGGATTCGGCTCCGGTATCGGCTGGATGCTGGCTATCGTAGGGATGGCTGCCATACGCGAGAAGCTGGCATATTCCAACGTCCCCAAACCGTTGAGAGGGTTGGGTATCACTTTTATTATCACCGGTCTCATGGGTATTGCTTTCCTGAGCTTCTCCGGCGTGAAACTC","8.80","2.84","22175","MDYISMFVRSIFVDNMVFAYYLGMCSFLAVSKNVKTSIGLGAAVTFILVCTLPINYLLQNYIFKAGALSWLGSQYAEVDLSFLSLIIFIAVIASFTQLVEMVVERFSPSLYASLGIFLPLIAVNCAILGGSLFMQQREFINVGMATVYGFGSGIGWMLAIVGMAAIREKLAYSNVPKPLRGLGITFIITGLMGIAFLSFSGVKL","2287229 2286618","This gene belongs to a conserved gene cluster, PG1906-PG1911, on the negative strand which is repeated on the positive strand at PG0275-PG0281. The similarity of PG0281 to PGPG1907, PG0280 to PG1908 and PG0278 to PG1910 suggests preservation of gene order. Rho independent terminators have been located on the appropriate strand immediately downstream of PG0281 and PG1906. The location of these terminators, similarity of gene function, and short (<42 bp) intergenic spaces suggest that these clusters may be operons.From gi:6166578:This protein has catalytic activity in the reaction NADH + ubiquinone = NAD(+) + ubiquinolTIGR ID: PG2178","Na+-translocating NADH-quinone reductase subunit Nqr5 (sodium-translocating NADH dehydrogenase)","Inner membrane, Cytoplasm","This sequence is orthologous to CT281.Numerous significant hits in gapped BLAST to sodium-translocating NADH dehydrogenase; e.g. residues 3-204 are 57% similar to AE004300 of Vibrio cholerae, residues 3-204 are 58% similar to AB008030 of Vibrio alginolyticus, residues 3-204 are 56% similar to AE004724 of Pseudomonas aeruginosa.","
InterPro
IPR003667
Family
RnfA-Nqr electron transport subunit
PF02508\"[2-204]TRnf-Nqr
InterPro
IPR010967
Family
NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit
TIGR01940\"[1-203]TnqrE
noIPR
unintegrated
unintegrated
PIRSF006102\"[1-204]TNQR_DE


","BeTs to 3 clades of COG2209COG name: Na+-translocating NADH-quinone oxidoreductase, subunit 5 (NqrE)Functional Class: CThe phylogenetic pattern of COG2209 is ------v-e--H------in-Number of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","Residues 3-202 are 58% similar to a (UBIQUINONE REDUCTASE TRANSMEMBRANE) protein domain (PD006282) which is seen in NQRE_VIBAL.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Thu Jun 7 16:27:06 MDT 2001","Thu Jun 7 16:29:52 MDT 2001","Thu Jun 7 16:27:06 MDT 2001","Tue Feb 13 12:03:09 MST 2001","","Tue Feb 13 12:03:09 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1907 is 38% similar to PG0281, Na+-translocating NADH-quinone oxidoreductase, 28% similar to PG0280, Na+-translocating NADH-quinone reductase and 27% similar to PG1908, Na+-translocating NADH-quinone reductase.","Wed Mar 28 09:36:51 MST 2001","Wed Mar 28 09:36:51 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 2 to 204 (E-value = 6.7e-83) place PG1907 in the Rnf-Nqr family which is described as Rnf-Nqr subunit, membrane protein (PF02508)","Wed Mar 28 09:36:51 MST 2001","34541749","","","","","","1","","","PG2178" "PG1908","2287899","2287273","627","ATGTCACTTTGGAATAAAAAGAATAAGGAAATTCTTCTCGGGCCGCTAAGCAGCAACAATCCCGTTATCGTGCAGATGCTTGGTATCTGCTCTGCTCTGGCCGTAACAGCCAAGCTGCAACCGGCTATTGTCATGGCCCTGTCGGTTACTGCGGTAGTAGCTTTTGCCAACGTTATTATCTCTCTCCTGCGCAATACGATCCCCGGACGCATCCGAATTATCGTTCAGCTCGTCGTGGTCGCAGCTCTGGTGACTATCGTGAGTCAGGTACTGAAAGCCTTCGCTTACGATGTGAACAAGCAGTTGTCCGTTTTCGTCGGCCTGATCATTACCAACTGTATTTTGATGGGACGTTTGGAGGCTTTTGCCTTGGCCAATCGTCCTTGGGAGTCATTCCTCGATGGTATCGGAAACGGTCTGGGATATGGATGGGTTTTGGTTATTATCGCTTTCTTCCGCGAATTGCTCGGCTCCGGTACATTGCTGGATATAAAAGTCATTCCCAAGAGCTTCTACGAATCGGGTTATGTCAATAACGGTCTGATGATCTTGCCGCCGATGGCTCTGATCACCGTGGCAGTTGTCATCTGGGTACATCGTGCCCGTAACAAGGATTTGCAAGAGAAC","10.50","7.13","22740","MSLWNKKNKEILLGPLSSNNPVIVQMLGICSALAVTAKLQPAIVMALSVTAVVAFANVIISLLRNTIPGRIRIIVQLVVVAALVTIVSQVLKAFAYDVNKQLSVFVGLIITNCILMGRLEAFALANRPWESFLDGIGNGLGYGWVLVIIAFFRELLGSGTLLDIKVIPKSFYESGYVNNGLMILPPMALITVAVVIWVHRARNKDLQEN","2287898 2287272","This gene belongs to a conserved gene cluster, PG1906-PG1911, on the negative strand which is repeated on the positive strand at PG0275-PG0281. The similarity of PG0281 to PGPG1907, PG0280 to PG1908 and PG0278 to PG1910 suggests preservation of gene order. Rho independent terminators have been located on the appropriate strand immediately downstream of PG0281 and PG1906. The location of these terminators, similarity of gene function, and short (<42 bp) intergenic spaces suggest that these clusters may be operons.TIGR ID: PG2179","Na+-translocating NADH-quinone reductase subunit Nqr4 (sodium-translocating NADH dehydrogenase)","Inner membrane, Cytoplasm","This sequence is orthologous to CT280.Numerous significant hits in gapped BLAST to sodium-translocating NADH dehydrogenase; e.g. residues 9-208 are 54% similar to AE004724 of Pseudomonas aeruginosa, residues 6-200 are 55% similar to AE004300 of Vibrio cholerae, residues 9-200 are 56% similar to Z37111 of Vibrio alginolyticus.","
InterPro
IPR003667
Family
RnfA-Nqr electron transport subunit
PF02508\"[5-197]TRnf-Nqr
InterPro
IPR011292
Family
NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit
TIGR01939\"[3-208]TnqrD
noIPR
unintegrated
unintegrated
PIRSF006102\"[4-205]TNQR_DE


","BeTs to 3 clades of COG1347COG name: Na+-translocating NADH-quinone reductase, subunit 5Functional Class: CThe phylogenetic pattern of COG1347 is ------v-e--H------in-Number of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","Residues 9-154 are 56% similar to a (UBIQUINONE REDUCTASE TRANSMEMBRANE) protein domain (PD006282) which is seen in Y168_HAEIN.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Wed Mar 28 12:50:40 MST 2001","Thu Jun 7 16:34:14 MDT 2001","Thu Jun 7 16:34:14 MDT 2001","Wed Mar 28 10:38:50 MST 2001","","Wed Mar 28 10:38:50 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1908 is 35% and 31% similar to PG0280 and PG0281 both Na+-translocating NADH-quinone reductases and 27% similar to PG1907, another Na+-translocating NADH-quinone reductase.","Wed Mar 28 10:38:50 MST 2001","Wed Mar 28 10:38:50 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 5 to 197 (E-value = 1.9e-75) place PG1908 in the Rnf-Nqr family which is described as Rnf-Nqr subunit, membrane protein (PF02508)","Wed Mar 28 10:38:50 MST 2001","34541750","","","","","","1","","","PG2179" "PG1909","2288639","2287908","732","ATGAATAGAGATAAAAACTCGTACACCATTCTCTATGCCTCGGTGATGGTTATTGTCGTGGCGGTTTTGCTGGCTTACGTCTCTCAGTCATTGGGCGACAGGCAGCGTGACAACGAGAAGATAGACAAGATGCAGCAGATCCTCCGCTCTGTGAATGCCGGAATAGAAGATAAGGGCAAAGTAATAGCTCGGTACACGGACGTGATCAAGCAAGAACTGCTCATCAATCAGGATGGTACGGTAGCCAAGACCTTCGAGGGCGAGCAGTTGGCACAAAATGAAGCATTCACGCTCAATACGCGCAATGCTTTCAAATCGGCCGCTAATGATCCAAGCATTTCGCTCCCTCTCTATATCGCAGAGATAGAGGGTCAGAAGAAATACATTGTCCCGATGAACGGTGCCGGTCTTTGGGGGCCGATCTGGGGATACATTGCACTGAACGAAGACTGCAATACGATATTCGGTGCAGATTTCAGTCACGAAGGCGAAACGCCGGGATTGGGAGCCGAAATCACTCGCTCGGAGTTTTCCGGTCAGTTTATCGGCAAAGAAATCTTCAAAGAGGGCGAATTCCGATCTGTTGCCGTAGTCAAGAAAGGCCAGAAAGCCGAAGGAAAGGACTATGTGGATGGCATTTCGGGCGGTACGCTGACGAGCGATGGAGTGAATGAGATGCTCATATCCTCTCTCCGTCCTTATGCTCTATACCTAATGAACAACGTAAAAAAA","5.10","-3.80","26863","MNRDKNSYTILYASVMVIVVAVLLAYVSQSLGDRQRDNEKIDKMQQILRSVNAGIEDKGKVIARYTDVIKQELLINQDGTVAKTFEGEQLAQNEAFTLNTRNAFKSAANDPSISLPLYIAEIEGQKKYIVPMNGAGLWGPIWGYIALNEDCNTIFGADFSHEGETPGLGAEITRSEFSGQFIGKEIFKEGEFRSVAVVKKGQKAEGKDYVDGISGGTLTSDGVNEMLISSLRPYALYLMNNVKK","2288638 2287907","This gene belongs to a conserved gene cluster, PG1906-PG1911, on the negative strand which is repeated on the positive strand at PG0275-PG0281. The similarity of PG0281 to PGPG1907, PG0280 to PG1908 and PG0278 to PG1910 suggests preservation of gene order. Rho independent terminators have been located on the appropriate strand immediately downstream of PG0281 and PG1906. The location of these terminators, similarity of gene function, and short (<42 bp) intergenic spaces suggest that these clusters may be operons.TIGR ID: PG2180","Na+-translocating NADH-quinone reductase gamma subunit (sodium-translocating NADH dehydrogenase subunit nqr3)","Inner membrane, Outer membrane, Cytoplasm","This sequence is orthologous to CT279.Several moderately significant hits in gapped BLAST to sodium-translocating NADH dehydrogenase Nqr3 subunit; e.g. residues 2-223 are 27% similar to AE004300 of Vibrio cholerae, residues 2-223 are 28% similar to AB008030 of Vibrio alginolyticus, residues 2-223 are 26% similar to AF165980 of Vibrio harveyi.","
InterPro
IPR007329
Domain
FMN-binding
PF04205\"[136-234]TFMN_bind
InterPro
IPR010204
Family
NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit
PIRSF009437\"[1-241]TNQR-1_subunit_C
TIGR01938\"[3-240]TnqrC


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 2-223 are 28% similar to a (UBIQUINONE OXIDOREDUCTASE GAMMA NADH SUBUNIT OF) protein domain (PD038728) which is seen in Q56582_VIBAL.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Wed Mar 28 12:53:23 MST 2001","Thu Jun 7 16:39:16 MDT 2001","Thu Jun 7 16:39:16 MDT 2001","Wed Mar 28 12:53:23 MST 2001","","Wed Mar 28 12:53:23 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 28 12:53:23 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 130 to 234 (E-value = 9.3e-24) place PG1909 in the FMN_bind family which is described as FMN-binding domain (PF04205)","Wed Mar 28 12:53:23 MST 2001","34541751","","","","","","1","","","PG2180" "PG1910","2289862","2288666","1197","TTGAAAGCGTTAAGGAATCAACTCAACAAACTGAAGCCTCATTTTGAAGAAGGCGGCAAGCTCCATGGCCTGCACTCTGTCTTCGACGGCTTCGAGACCTTTCTCTTTGTGCCGAACAGGACATCGCAGCATGGCGTACATGTGCACGATGCCATTGATAGCAAGCGCACGATGATCGTCGTGTGTATGGCTCTTTTGCCGGCCCTGCTCTTCGGTATGTATAATGTGGGGGTACAACATTATATGGCCATCGATGCTCCCGTAGTATTTTGGCCGGCTTTTCTCTTCGGACTTCTCGCCGTACTGCCCAAACTCATTGTCTCCTATGCCGTCGGTTTGGGGATAGAGTTTGCCGTAGCTCAGTACCGGAAGGAAGAAATTCAGGAAGGCTTCCTCGTATCGGGTCTGCTTATCCCGATGATCGTGCCGGTAGATACTCCGCTGTGGATGATCGCCGTGGCGACGGCTTTTGCCGTGGTTTTTGCCAAGGAGGTGTTCGGCGGTACGGGACGCAATATATTCAACGTGGCTCTCGTGACGCGTGCCTTCCTCTTTTTCGCCTATCCGGCGGCTATGAGTGGCGATCAGGTTTTTGTCCGCACGGCTGATACCTTCGGCCTCGGCGCAGGTACGGTAGCGGACGGCTTCTCCGGAGCTACACCTTTGGGGCAGATAGCCACGGCCGGTGCCAAGATGCCTGAAATACATAATGTGGCAGGCGACCCCTCTTCCCTGATGGATGCTTTCCTCGGCTTTATACCCGGCTCCATCGGTGAAACCTCTACTCTGGCTATCCTGATCGGAGCTGTCCTGCTGATTTGGACGGGGATCGCGAGCTGGAAGATCATGTTGAGCGGTTTGGTAGGAGCCTCAGCAATGGCTCTCGTATTCAATGCCATCGGCACGACGGCGGCGATGCAGATCACTCCGCTGATGCACATTGTCTATGGAGGCTTTGCTTTTGGCTTGGTATTTATGGCCACCGACCCTGTTACTTCTGCCCGTACAGAAAAGGGGAAATGGATCTTCGGTTTCTTCGTCGGTCTGATGGCTGTATTCATCCGAGTGCTCAATCCGGGTTACCCTGAAGGGATGATGCTTGCGATCCTGCTCATGAACGTATTTGCTCCGCTGATCGACTATTTCGTGGTGGATAGCAACATCAAAGCGCGCAAAGCACGTATGCTCAAGAAATCC","9.10","4.12","42884","LKALRNQLNKLKPHFEEGGKLHGLHSVFDGFETFLFVPNRTSQHGVHVHDAIDSKRTMIVVCMALLPALLFGMYNVGVQHYMAIDAPVVFWPAFLFGLLAVLPKLIVSYAVGLGIEFAVAQYRKEEIQEGFLVSGLLIPMIVPVDTPLWMIAVATAFAVVFAKEVFGGTGRNIFNVALVTRAFLFFAYPAAMSGDQVFVRTADTFGLGAGTVADGFSGATPLGQIATAGAKMPEIHNVAGDPSSLMDAFLGFIPGSIGETSTLAILIGAVLLIWTGIASWKIMLSGLVGASAMALVFNAIGTTAAMQITPLMHIVYGGFAFGLVFMATDPVTSARTEKGKWIFGFFVGLMAVFIRVLNPGYPEGMMLAILLMNVFAPLIDYFVVDSNIKARKARMLKKS","2289861 2288665","This gene belongs to a conserved gene cluster, PG1906-PG1911, on the negative strand which is repeated on the positive strand at PG0275-PG0281. The similarity of PG0281 to PGPG1907, PG0280 to PG1908 and PG0278 to PG1910 suggests preservation of gene order. Rho independent terminators have been located on the appropriate strand immediately downstream of PG0281 and PG1906. The location of these terminators, similarity of gene function, and short (<42 bp) intergenic spaces suggest that these clusters may be operons.TIGR ID: PG2181","NADH dehydrogenase (ubiquinone)","Inner membrane, Cytoplasm","Numerous significant hits in gapped BLAST; e.g. residues 4-394 are 43% similar to gb|AAG06386.1|AE004724_15 Na+-translocating NADH:ubiquinone oxidoreductase subunit Nrq2 of Pseudomonas aeruginosa, residues 4-394 are 43% similar to gb|AAF40996.1| Na(+)-translocating NADH-quinone reductase, subunit B of Neisseria meningitidis MC58, residues 4-394 are 42% similar to gb|AAC21837.1| NADH:ubiquinone oxidoreductase, subunit B of Haemophilus influenzae Rd.This sequence is similar to BT1159.","
InterPro
IPR004338
Family
NQR2 and RnfD
PF03116\"[39-391]TNQR2_RnfD_RnfE
InterPro
IPR006741
Family
Accessory gene regulator B
SM00793\"[230-385]Tno description
InterPro
IPR010966
Family
NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit
TIGR01937\"[4-391]TnqrB: NADH:ubiquinone oxidoreductase, Na(+)
noIPR
unintegrated
unintegrated
tmhmm\"[54-74]?\"[80-100]?\"[105-123]?\"[142-162]?\"[172-192]?\"[252-272]?\"[282-302]?\"[312-332]?\"[342-362]?\"[368-390]?transmembrane_regions


","BeTs to 3 clades of COG1805COG name: Uncharacterized membrane protein, RnfD familyFunctional Class: SThe phylogenetic pattern of COG1805 is ------vce--H------in-Number of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","Residues 102-354 are 43% similar to a (UBIQUINONE PROTEIN TRANSMEMBRANE NADH DEHYDROGENASE) protein domain (PD014218) which is seen in Q56587_VIBAL.Residues 357-391 are 68% similar to a (UBIQUINONE OXIDOREDUCTASE NADH DEHYDROGENASE NITROGEN) protein domain (PD041488) which is seen in O05011_HAEIN.Residues 20-79 are 46% similar to a (UBIQUINONE OXIDOREDUCTASE NADH DEHYDROGENASE NITROGEN) protein domain (PD041489) which is seen in O05011_HAEIN.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Thu Dec 4 10:52:07 2003","Wed Mar 22 11:59:03 MST 2000","Thu Dec 4 10:52:07 2003","Wed Mar 28 10:45:37 MST 2001","Wed Mar 22 11:59:03 MST 2000","Wed Mar 28 10:45:37 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 47-383 show 31% similarity to PG0278, Na+-translocating NADH-quinone reductase, Nqr2 subunit.","Wed Mar 28 14:08:49 MST 2001","Wed Mar 28 10:45:37 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 39 to 391 (E-value = 7.5e-116) place PG1910 in the NQR2_RnfD_RnfE family which is described as NQR2, RnfD, RnfE family (PF03116)","Mon Jun 11 09:43:04 MDT 2001","34541752","","","","","","1","","","PG2181" "PG1911","2291248","2289896","1353","ATGGCAAAAGTTATAAAAACAAAAAAAGGCCTTGCACTTAATCTGAAAGGAAAACCGCTGCCCGAGATGCTGGCCGAACCGGCCCAAAGTCCTACTTACGCGGTCGTGCCCGACGATTTTGAAGGTGTTATCCCCAAGGTGACGGCTCGTCCGGGGGATAAGGTGCGTGCCGGCTCAGCACTGATGCACCACAAGGCATATCCGGAGATGAAGTTTACAAGTCCGGTTAGCGGCGAAGTGATCGCGGTGAATCGCGGTGCCAAGCGCAAGGTGTTGAGCATCGAGGTGAAACCGGACGGACTGAACGAATACGAGTCATTCCCTGTCGGGGATCCGTCTGCCCTCTCTGCCGAACAGATCAAGGAGCTTTTACTGTCGAGCGGTATGTGGGGTTTTATTAAGCAACGTCCTTACGACATAGTGGCTACACCGGATATAGCTCCACGCGACATTTATATTACTGCCAACTTTACTGCACCATTGGCTCCGGACTTCGATTTCATCGTTCGAGGAGAAGAACGCGCCCTGCAGACTGCCATCGATGCCTTGGCCAAACTCACGACAGGAAAGGTGTATGTGGGCCTGAAGCCGGGTTCATCTCTGGGCTTGCACAATGCAGAAATCGTAGAAGTACACGGACCTCATCCGGCAGGTAACGTGGGCGTGCTGATCAATCATACGAAGCCAATCAATCGGGGCGAAACGGTGTGGACGCTCAAGGCTACCGACCTGATCGTGATCGGACGTTTCCTGCTTACGGGCAAAGCCGATTTTACCAGAATGATTGCCATGACCGGCTCAGACGCTGCAGCTCACGGATACGTCCGTATTATGCCGGGTTGCAATGTCTTTGCTTCCTTCCCCGGCCGACTGACAATAAAGGAATCTCACGAGCGTGTGATCGATGGCAATGTGCTGACCGGTAAGAAGCTCTGCGAGAAGGAGCCTTTCCTGTCAGCCCGGTGTGACCAGATCACGGTGATCCCCGAAGGCGACGATGTGGACGAACTCTTCGGGTGGGCTGCACCCCGTCTCGATCAGTACAGCATGAGCAGAGCTTATTTCTCTTGGTTGCAGGGGAAAAACAAAGAGTACGTACTCGATGCCCGGATCAAGGGTGGCGAACGTGCTATGATCATGAGCAACGAGTATGACCGCGTTTTCCCGATGGACATCTATCCGGAGTATTTGCTCAAGGCTATTATAGCATTCGACATCGACAAGATGGAGGACTTAGGCATATATGAAGTGGCTCCGGAGGACTTTGCCACTTGCGAATTTGTGGATACATCCAAGATCGAGCTGCAGCGTATCGTTCGCGAGGGCTTGGATATGCTCTATAAGGAAATGAAT","6.00","-5.22","49815","MAKVIKTKKGLALNLKGKPLPEMLAEPAQSPTYAVVPDDFEGVIPKVTARPGDKVRAGSALMHHKAYPEMKFTSPVSGEVIAVNRGAKRKVLSIEVKPDGLNEYESFPVGDPSALSAEQIKELLLSSGMWGFIKQRPYDIVATPDIAPRDIYITANFTAPLAPDFDFIVRGEERALQTAIDALAKLTTGKVYVGLKPGSSLGLHNAEIVEVHGPHPAGNVGVLINHTKPINRGETVWTLKATDLIVIGRFLLTGKADFTRMIAMTGSDAAAHGYVRIMPGCNVFASFPGRLTIKESHERVIDGNVLTGKKLCEKEPFLSARCDQITVIPEGDDVDELFGWAAPRLDQYSMSRAYFSWLQGKNKEYVLDARIKGGERAMIMSNEYDRVFPMDIYPEYLLKAIIAFDIDKMEDLGIYEVAPEDFATCEFVDTSKIELQRIVREGLDMLYKEMN","2291247 2289895","This gene belongs to a conserved gene cluster, PG1906-PG1911, on the negative strand which is repeated on the positive strand at PG0275-PG0281. The similarity of PG0281 to PGPG1907, PG0280 to PG1908 and PG0278 to PG1910 suggests preservation of gene order. Rho independent terminators have been located on the appropriate strand immediately downstream of PG0281 and PG1906. The location of these terminators, similarity of gene function, and short (<42 bp) intergenic spaces suggest that these clusters may be operons.TIGR ID: PG2182","Na+-translocating NADH-ubiquinone oxidoreductase alpha subunit","Cytoplasm, Inner membrane","PG1911 is identical to a previously sequenced P.gingivalis protein in GenBank, AAD33930. Numerous significant hits in gapped BLAST; e.g. residues 4-449 are 34% similar to gb|AAF40997.1| Na(+)-translocating NADH-quinone reductase, subunit A of Neisseria meningitidis MC58, residues 3-449 are 33% similar to gb|AAF95439.1| NADH:ubiquinone oxidoreductase, Na translocating, alpha subunit of Vibrio cholerae, residues 4-449 are 33% similar to dbj|BAA22910.1| Nqr1 subunit of Na-translocating NADH-quinone reductase complex alpha-subunit of Vibrio alginolyticus.This sequence is similar to BT1160.","
InterPro
IPR008703
Family
Na-translocating NADH-quinone reductase subunit A
PF05896\"[4-450]TNQRA
TIGR01936\"[5-450]TnqrA
InterPro
IPR011053
Domain
Single hybrid motif
SSF51230\"[19-91]THybrid_motif
noIPR
unintegrated
unintegrated
PD025201\"[4-449]TPD025201


","BeTs to 4 clades of COG0511COG name: Biotin carboxyl carrier protein of acetyl-CoA carboxylaseFunctional Class: IThe phylogenetic pattern of COG0511 is AmtKYQvceBRhuj---linxNumber of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","Residues 4-449 are 33% similar to a (OXIDOREDUCTASE ALPHA UBIQUINONE) protein domain (PD025201) which is seen in Q56586_VIBAL.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Thu Dec 4 10:53:55 2003","Tue May 22 13:44:23 MDT 2001","Thu Dec 4 10:53:55 2003","Fri Jan 19 15:41:49 2001","","Wed Mar 28 12:55:41 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Mar 28 12:55:41 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 4 to 450 (E-value = 4.6e-277) place PG1911 in the NQRA family which is described as Na(+)-translocating NADH-quinone reductase subunit A (NQRA) (PF05896)","Tue May 22 13:44:23 MDT 2001","34541753","Wed Mar 28 15:34:45 MST 2001","","","","","1","","","PG2182" "PG1911.1","2291814","2291560","255","GTGAAATTTTTGCGAGCCAAAAGAATAATTTTTAGGCTCGAGTTTCTCGAAATTCACGAACCATGTTTTGTCCATTTATGGTTCGTGTTTTTGTCGAAGAGGAAGGTGCCCGATTCCTTTTTTCGGCGGTTCGAGTTTGTTGGCATCGGGATGCGAGTATGCGTATGCCGAGTGGTGTGCCGATTGGTAAGGGGGCACAAGTGTCATTCGCACCGGCATAGCTTCGTCCACTCCTGCTATGCCGGAAATCAAGCC","","","10205","VKFLRAKRIIFRLEFLEIHEPCFVHLWFVFLSKRKVPDSFFRRFEFVGIGMRVCVCRVVCRLVRGHKCHSHRHSFVHSCYAGNQA","","NO TIGR ID corresponds to this gene.","hypothetical protein","Cytoplasm","No hits found using gapped BLAST search of GenBank.","
noIPR
unintegrated
unintegrated
signalp\"[1-18]?signal-peptide


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Tue Feb 13 12:03:04 MST 2001","Tue Feb 13 12:03:04 MST 2001","Tue Feb 13 12:03:04 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Apr 5 14:56:13 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Apr 5 14:56:13 MDT 2001","","","","","","","1","","","" "PG1912","2293342","2292029","1314","ATGACATACACCCTTGTTTTATATATGGCAGTGGCTTCTATCGGCCTGGCTCTCTTCTGGATATTCGAGAGGCTGATGATCCATGGCAATACCCACTGTCGTCTTCGTCGTGCCTACTATCTGGGAGGGTTCGTCTCGGTAGTCGTCTTGCCTTTCCTGGGCTATTTCCTTCCCTCTTGGCCGAGCTTATTTATCCAAAACAGGTCGGTCGGGATGGAGATACTCCGTTCCATCGAGATCGTATTGCCCGAGGCTTTGGTCAGAACGGCGGGGGCGGATGCTATTCCTGCTGTCTCGCCTCTCCTTCGGGGCCTGTTCTTGGCTTGGTTACTTGGCATAGGCGTACTGCTGATTCGTTTCGGTATTCGCCTCCGTTCCCTCCTGTGTCTTATTTGCGGTGCCGAACGGGCGGAGATAGAGGGTGTACCCGTTTACTTTGCTCCTCGTGTAAGGATGCCGTTCAGCTTCTGTAGGCGTATTTATCTTCCGACCGATCTGCGCTCATACCCTTCTGTGAGAAATGTTCTTATCCATGAACAAGAACATACCCGAGCAACGCACTTTGTCGATCTTTTGATCGCCGAAGTGGCATGCATGCTGTTTTGGTTCAATCCGTTTGCTTGGGCTTTGAAGCGCGATATGCAGCGCAATTTGGAGTTTTTGGCCGATCGGGCTGTGCTCCTCAGAGGCGTGAGCAGACGCGAATATCAATATGAATTGTTGGGATTTACGCTGGAGGTCGCGGCCGGACCTCTGTGTAGTTCTTACAATATAAACGACTTAAGAGAAAGAATCAGAATGATGAACAAAACGAAATCCAGTCGTGCGGCCGGAGCCAGGTATCTTGTCGCACTCCCGTTGGCTGCCCTTATGCTTCTGAGCGGTAAATGGCTGTGGGCGGGCAATGCCGTATCCGAAGTCCGGGAAGTAGTAGCAACCGTTGCGAGCGATCCCGCCCCCTTGTCTGATGCTCCTGACATCTCCCTGCAGCAGGACGAGGATCCTGTGTGTTCCGAGCTAGATACTCCACCATCTTTCCCCGGGGGAATGTCCGAACTGATGCACTTTCTGAGCAAGAATTTAAAGTATCCGGAACAATCTGCAAAGAACAGCATCCAAGGTCGAGTTGTGGTCTCGTTTATTGTCGAAAAAGACGGCAGACTGACTAACATACAAGTGGAAAAAAGCGTAGCACCCGAATTGGACGCAGAAGCCGTAAGAGTGATTTCAGCTATGCCGAAGTGGAGTCCCGGCAAACAAAAGGACAAGAAAGTCCGCGCGAGGGTAAACCAACCAGTCATATTCCGCCTGAAG","10.10","13.13","49303","MTYTLVLYMAVASIGLALFWIFERLMIHGNTHCRLRRAYYLGGFVSVVVLPFLGYFLPSWPSLFIQNRSVGMEILRSIEIVLPEALVRTAGADAIPAVSPLLRGLFLAWLLGIGVLLIRFGIRLRSLLCLICGAERAEIEGVPVYFAPRVRMPFSFCRRIYLPTDLRSYPSVRNVLIHEQEHTRATHFVDLLIAEVACMLFWFNPFAWALKRDMQRNLEFLADRAVLLRGVSRREYQYELLGFTLEVAAGPLCSSYNINDLRERIRMMNKTKSSRAAGARYLVALPLAALMLLSGKWLWAGNAVSEVREVVATVASDPAPLSDAPDISLQQDEDPVCSELDTPPSFPGGMSELMHFLSKNLKYPEQSAKNSIQGRVVVSFIVEKDGRLTNIQVEKSVAPELDAEAVRVISAMPKWSPGKQKDKKVRARVNQPVIFRLK","2293341 2292028","TIGR ID: PG2185","conserved hypothetical protein (possible tonB domain)","Inner membrane, Cytoplasm","Residues 147-233 show 31% similarity to B. licheniformis beta-lactamase regulatory protein 1 and 31% similarity to B. licheniformis penicillinase antirepressor penJ.Residues 363-415 show 41% similarity to P. aeruginosa TonB.Residues 362-424 show 38% similarity to E. coli TonB.Residues 360-420 show weak similarity to TonB proteins of X. fastidiosa, H. pylori, P. chrysanthemi and K. pneumoniae.","
InterPro
IPR003538
Family
Gram-negative bacterial tonB protein
PR01374\"[355-376]T\"[376-394]TTONBPROTEIN
PF03544\"[360-394]TTonB
InterPro
IPR006260
Domain
TonB, C-terminal
TIGR01352\"[361-438]TtonB_Cterm
InterPro
IPR008756
Domain
Peptidase M56, BlaR1
PF05569\"[153-241]TPeptidase_M56
noIPR
unintegrated
unintegrated
SSF74653\"[313-438]TSSF74653


","BeTs to 3 clades of COG0810COG name: Periplasmic protein TonB, links inner and outer membranesFunctional Class: MThe phylogenetic pattern of COG0810 is -----q--e--hUJ-------Number of proteins in this genome belonging to this COG is 2","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Fri May 18 17:59:02 MDT 2001","Tue Feb 13 12:15:32 MST 2001","Tue Feb 13 12:15:32 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 309-438 show 46% similarity to PG0707, a hypothetical protein with possible TonB domain.","Tue Feb 13 12:24:51 MST 2001","Fri May 18 17:59:02 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 153 to 241 (E-value = 3.2e-07) place PG1912 in the Peptidase_M56 family which is described as BlaR1 peptidase M56 (PF05569)Residues 360 to 394 (E-value = 2.3e-09) place PG1912 in the TonB family which is described as Gram-negative bacterial tonB protein (PF03544)","Fri May 18 17:59:02 MDT 2001","34541754","","","","","","1","","","PG2185" "PG1913","2293712","2293380","333","ATGAATATCATCTGGCAACTGGGGACATGCAACATTCGTCAGGTACTGGCCGAAGTGCCGGAGCCTAAACCTCCTTACACGACCCTTGCATCGGTATTCAAAAATCTGGAACGCAAACACTATATCAAACCTTTTCGCGAGGGAAAAACCTACCATTATCGTATCTGTATCTCCCGCGAAGAGTATGCTACACGAACCATGCACCGCATGGTGGACAACTACTTCACGGGCAGCTATAAGCATCTGGTACAGTTTTTTGCCGCCGGTAGCGATATTTCCGTGAAGGATCTGCGCGAAGTGATCGATATGATCGAAAAAGGAGAGGAAAGCGAG","8.10","1.86","13090","MNIIWQLGTCNIRQVLAEVPEPKPPYTTLASVFKNLERKHYIKPFREGKTYHYRICISREEYATRTMHRMVDNYFTGSYKHLVQFFAAGSDISVKDLREVIDMIEKGEESE","2293756 2293379","TIGR ID: PG2186","hypothetical protein","Cytoplasm","No significant hits found using gapped BLAST.","
InterPro
IPR005650
Family
Penicillinase repressor
PD008194\"[1-102]TProk_trans_reg
PF03965\"[1-106]TPencillinase_R
InterPro
IPR011991
Domain
Winged helix repressor DNA-binding
G3DSA:1.10.10.10\"[1-67]TWing_hlx_DNA_bd
noIPR
unintegrated
unintegrated
SSF46785\"[1-110]TSSF46785


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","Thu Jun 14 13:10:30 MDT 2001","","Thu Jun 14 13:10:30 MDT 2001","Thu Jun 14 13:10:30 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:10:30 MDT 2001","Thu Jun 14 13:10:30 MDT 2001","","","Tue Feb 13 12:28:38 MST 2001","Thu Apr 5 19:10:00 MDT 2001","Tue Feb 13 12:28:38 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Apr 5 19:10:00 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Jun 21 08:59:43 MDT 2001","34541755","","","","","","1","","","PG2186" "PG1914","2294736","2293852","885","ATGAGCAATAACGGATCACCCCCGCGTCTCAAAGCTTGGCTCGCTTTGCTACGGCCTCATACCCTGCCGGCATCTGTCAGTCCTGTCGTTGTAGCCATTGCTTATGCTATAGCTGACGGCAATTTTCGCTGGCCACAGGCCGCTTTGGCTTTGATCGTAGCGGTGTCTGCCCAAACGGTCAGCAATATAGCCAACGATTGGTTCGACTATAAGAAGGGTGCGGATACCGATCAGCGTGTAGGCTTTGAACGTGGGATCTCCAAAGGTTGGTTGTCGGAGCGACAGGTTCTCGCAGCTCTTTTCTCATTTCTTTTTCTGCTCGGCTTTAGCGGTTTTCTGCTTTGTGCCATTAGCAACTGGTGGTTGCTGGTCGTGGGAGTCGTTGTAGCCATTGGAGCTTTGTCGTATAGTGCCGGTCCTTATCCTTTGGCCTATCATGGATTGGGCGAAATCGCAGTCTTCATTTTTTTCGGTCTGATCCCTGTCCTCTTCACCTATTACGTTCAGGCCGAAAGTTTCCCCTCCGATCTTTGGCATTTGGGCGCGGCGATGGGATTTGCCGGAGTCAATATCCTCATCGTGAACAACTATCGGGACTATGAAGAAGACCGCAAGAGTGGCAAGCGTACGATCCTCGTAAAGAAAGGACGCGACCTCGGTCCGAAACTCTATCTCGCCTGCGGTCTGCTTTCCATGATGGTACTTTATCCTTTCTTTTCGGCCGGCGGTTTGCTGCTTCTGCTGCTTTATCTTGCTTTTTTCATGACCAATTACCGCCGTCTTCTTCGAGAGGAGGGTACGGCGCTGAACGCGCTTCTTGTCCGTACGGCAAAGGCCATTTCTCTTTTGGCTCTCGTTGCGATAGCCATGCTTTTCCTTGCTCGA","10.30","8.62","32369","MSNNGSPPRLKAWLALLRPHTLPASVSPVVVAIAYAIADGNFRWPQAALALIVAVSAQTVSNIANDWFDYKKGADTDQRVGFERGISKGWLSERQVLAALFSFLFLLGFSGFLLCAISNWWLLVVGVVVAIGALSYSAGPYPLAYHGLGEIAVFIFFGLIPVLFTYYVQAESFPSDLWHLGAAMGFAGVNILIVNNYRDYEEDRKSGKRTILVKKGRDLGPKLYLACGLLSMMVLYPFFSAGGLLLLLLYLAFFMTNYRRLLREEGTALNALLVRTAKAISLLALVAIAMLFLAR","2294735 2293851","TIGR ID: PG2187","1,4-dihydroxy-2-naphthoate octaprenyltransferase (DHNA-octaprenyltransferase)","Inner membrane, Cytoplasm","Significant hits (P < 10e-20) for 1,4-dihydroxy-2-naphthoate octaprenyltransferase of E. coli, P. multocida Halobecterium sp. and H.ducreyi.","
InterPro
IPR000537
Family
UbiA prenyltransferase
PF01040\"[24-290]TUbiA
InterPro
IPR004657
Family
1,4-dihydroxy-2-naphthoate octaprenyltransferase
TIGR00751\"[18-290]TmenA
noIPR
unintegrated
unintegrated
PTHR13929\"[9-290]TPTHR13929
SSF103481\"[97-201]TSSF103481


","BeTs to 5 clades of COG1575COG name: 1,4-dihydroxy-2-naphthoate octaprenyltransferaseFunctional Class: HThe phylogenetic pattern of COG1575 is ------vcebrh---------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 13-295 are 28% similar to a (MENAQUINONE BIOSYNTHESIS 4-DIHYDROXY-2-NAPHTHOATE) protein domain (PD011509) which is seen in MENA_ECOLI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Fri May 18 18:07:18 MDT 2001","Tue Feb 13 12:47:11 MST 2001","Tue Feb 13 12:47:11 MST 2001","","Tue Feb 13 12:47:11 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri May 18 18:02:18 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 24 to 292 (E-value = 2.5e-20) place PG1914 in the UbiA family which is described as UbiA prenyltransferase family (PF01040)","Fri May 18 18:02:18 MDT 2001","34541756","","","","","","1","","","PG2187" "PG1915","2295874","2294729","1146","ATGAAAACACCTTTCTATTTTTATGATCTGACACTCTTGGAGAGGACGCTTTCCGCGCTCGCCCGGAGTGCAGGAAGGCACGATGTTGCCATTCACTATGCGCTCAAGGCGAACAATCATCCTCGTATTTTGCAGACGGTTGCAGCTGCCGGCTTCGGGGCGGACTGTGTGAGTGGAGGGGAGATCGAAGCGGCTATCGAGGCAGGCTTTCCCGCTTCCGATATTTTTTTTGCCGGAGTAGGCAAAAGCGATGAAGAGATTTTGCTTTCTTTAGAGGCGCGGATAGGTGCTTTCGTAGTAGAGAGTGTGCCCGAATTGCTGAACATCGAACGATTGGCCGGATCGAAGAACGACATCGCTCCGATATTGCTTCGGCTCAATCCTGAGGTCGATGCGCATACGCACAGCCATATAACGACAGGATTGGCAGAAAACAAATTCGGTCTTTTGCCCGAAGATGCACTTGCACTGATGCCCCACCTTTTACAGTCCGGATCGCTGGTATGGAGAGGATTGCACTTCCATATTGGATCGCAGATACGGTCAGCCAAGGTTTTTGAGAAGCTATGCGAAAAGACCAATCGCATCCTTGCTTCTTTCCGTACGGCCGGCTATTCCCCTGACATTATAGATATGGGAGGCGGGCTTGGTATCAATTATGACGAGCCGGAGGCCGAACCGATACCTGATTTTGCCACTTATATCGAGCGGTATCGACGGATGATAGAGACCGGTGAGGCTCGGCTGCATATCGAACCCGGGCGTTCGGTGGTGGCACAATGCGGCAGTCTGATTACTCAAGTGCTGTACATCAAAGAAGGAAAGGCAAAAAAGTTTGCCATAGTGGATGCCGGTATGACCGACCTCGTCCGTCCGGCTTTGTATGAGGCGCATCACCAAATCCGGTTGGTGCAACCCGGAGAATGGACGATGCGTGCGACTTCTCCCTCAGCGGCTCTGACAGAGAAATACGATGTTGTCGGCCCTATCTGCGAATCCAGCGATGTATTCGAGCGTGAATTGCTCATGCCCGAACTCAAACGCGGCGATTATCTGGCTATTCGTTCGGCCGGAGCATATGGAGCCGTGATGGCTTCTTCCTATAATATGCGTCCGCTACCGGGAAGTCTTTTCTCAGATGAGCAA","5.70","-9.27","41785","MKTPFYFYDLTLLERTLSALARSAGRHDVAIHYALKANNHPRILQTVAAAGFGADCVSGGEIEAAIEAGFPASDIFFAGVGKSDEEILLSLEARIGAFVVESVPELLNIERLAGSKNDIAPILLRLNPEVDAHTHSHITTGLAENKFGLLPEDALALMPHLLQSGSLVWRGLHFHIGSQIRSAKVFEKLCEKTNRILASFRTAGYSPDIIDMGGGLGINYDEPEAEPIPDFATYIERYRRMIETGEARLHIEPGRSVVAQCGSLITQVLYIKEGKAKKFAIVDAGMTDLVRPALYEAHHQIRLVQPGEWTMRATSPSAALTEKYDVVGPICESSDVFERELLMPELKRGDYLAIRSAGAYGAVMASSYNMRPLPGSLFSDEQ","2296083 2294728 [Bad Olap 2492 178 0]","TIGR ID: PG2188","diaminopimelate decarboxylase","Cytoplasm","Strong similarity (P < 1e-50) to diaminopimelate decarboxylase proteins of Z. mobilis, H. pylori, N. meningitidis, H. influenzae, A. aeolicus, V. cholerae, P. multocida, P. aeruginosa, P. fluorescens and A. fulgidus.This sequence is similar to BT1374.","
InterPro
IPR000183
Domain
Orn/DAP/Arg decarboxylase 2
PR01179\"[33-51]T\"[53-65]T\"[166-179]T\"[249-268]T\"[358-371]TODADCRBXLASE
PF00278\"[263-379]TOrn_DAP_Arg_deC
PF02784\"[9-260]TOrn_Arg_deC_N
PS00878\"[33-51]?ODR_DC_2_1
PS00879\"[203-217]?ODR_DC_2_2
InterPro
IPR002986
Domain
Diaminopimelate decarboxylase
PR01181\"[51-68]T\"[140-149]T\"[277-295]T\"[368-382]TDAPDCRBXLASE
TIGR01048\"[2-382]TlysA
InterPro
IPR009006
Domain
Alanine racemase/group IV decarboxylase, C-terminal
SSF50621\"[231-381]TRacem_decarbox_C
noIPR
unintegrated
unintegrated
G3DSA:3.20.20.10\"[3-254]TG3DSA:3.20.20.10
PTHR11482\"[2-374]TPTHR11482
PTHR11482:SF5\"[2-374]TPTHR11482:SF5
SSF51419\"[2-261]TSSF51419


","BeTs to 11 clades of COG0019COG name: Diaminopimelate decarboxylaseFunctional Class: EThe phylogenetic pattern of COG0019 is amt-yQVCebrhUJ-------Number of proteins in this genome belonging to this COG is 2","***** IPB000183 (Orn/DAP/Arg decarboxylases family 2) with a combined E-value of 3e-59. IPB000183A 33-62 IPB000183B 72-106 IPB000183D 167-180 IPB000183E 202-221 IPB000183F 247-265 IPB000183G 322-335 IPB000183H 349-369","Residues 325-372 are 62% similar to a (DECARBOXYLASE LYASE BIOSYNTHESIS ORNITHINE PYRIDOXAL) protein domain (PD001257) which is seen in Q9ZME5_BBBBB.Residues 3-299 are 42% similar to a (DECARBOXYLASE LYASE BIOSYNTHESIS PYRIDOXAL PHOSPHATE) protein domain (PD001258) which is seen in Q9Z661_ZYMMO.Residues 124-382 are 25% similar to a (CARBOXYNORSPERMIDINE DECARBOXYLASE NSPC PROTEIN PUTATIVE) protein domain (PD024911) which is seen in O24865_HELPY.","","Thu Jun 14 13:10:39 MDT 2001","","Thu Jun 14 13:10:39 MDT 2001","Thu Jun 14 13:10:39 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:10:39 MDT 2001","Thu Jun 14 13:10:39 MDT 2001","","","Tue Feb 13 12:58:38 MST 2001","Thu Dec 4 15:17:36 2003","Tue Feb 13 12:58:38 MST 2001","Thu Jun 21 08:56:25 MDT 2001","Thu Jun 21 08:56:25 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri May 18 18:05:06 MDT 2001","-54% similar to PDB:1TUF Crystal structure of Diaminopimelate Decarboxylase from m. jannaschi (E_value = 5.7E_53);-54% similar to PDB:1TWI Crystal structure of Diaminopimelate Decarboxylase from m. jannaschii in co-complex with L-lysine (E_value = 5.7E_53);-50% similar to PDB:1KNW Crystal structure of diaminopimelate decarboxylase (E_value = 9.4E_40);-50% similar to PDB:1KO0 Crystal Structure of a D,L-lysine complex of diaminopimelate decarboxylase (E_value = 9.4E_40);-49% similar to PDB:1HKV MYCOBACTERIUM DIAMINOPIMELATE DICARBOXYLASE (LYSA) (E_value = 1.4E_38);","","","Residues 9 to 260 (E-value = 2.6e-59) place PG1915 in the Orn_Arg_deC_N family which is described as Pyridoxal-dependent decarboxylase, pyridoxal binding domain (PF02784)Residues 263 to 380 (E-value = 1.2e-42) place PG1915 in the Orn_DAP_Arg_deC family which is described as Pyridoxal-dependent decarboxylase, C-terminal sheet domain (PF00278)","Thu Dec 4 15:17:36 2003","34541757","","","","","","1","","","PG2188" "PG1916","2297244","2295907","1338","TTGAAAGTTCTCAAATTTGGCGGTACGTCTGTAGGAGATGCTGAGCGTATCCGCAGTGTTGCCCGACTGATTACTTCGGTAAAAGGAAGAAAAATTATAGTCCTTTCGGCTATGGCCGGAACGACCAATTCGCTTGTCGAAATAGCCTCACACCTTGTCAAACGCAATGTGGCACAGGCCAAAGAGGTGGTGCAGGTGTTGCGAGAGAAATATCATCGCGAAATAAATGCTCTATACAAACGTCCGGATACCTTGAGCGCAGCCAAGAAGGCCGTCGACTCCCTCCTCGACTCTCTGGGTCATATGTGCGACGTGGAGGGCTTCACACTCTTCGAGGAAAAGCGTGTGTTGATCCTCGGCGAGCTGATGAGCACGACCATGATGCAGATCTATTTGCAGGAGATGGGTGCAGTGGTAGCCATGCTGCCGGCTTTGGAGTATATGCGTACCGACAAGAATGCAGAGCCGGACAAAGACTATATCCGGAAGCATCTCTTGCCGATGATAGAGGCTCATCCGGATGAGGATATGCTATTCCTGACGGAGGGTTACATTTGTCGGAATGCCTTCGGAGAGATCGACAATCTCCAACGTGGCGGCAGCGACTACACGGCCTCTCTGATCGGAGCAGCACTGAATGCTGATGAAATTCAGATATGGACGGATATCGACGGCATGCACAACAATGATCCTCGTGTCGTAGACGTTACGGCACCCGTTCGCCGTCTCCATTTTGAAGAAGCTGCGGAACTGGCACACTTCGGAGCCAAAATCCTCCATCCGACCTGTATCAAGCCGGCCAAGGAGAAGAATATTCCGGTACGTTTACTCAATACGATGGATCCCGATGCACCCGGGACGCTGATTTCACTGGATACCGAAAAGGATTGTATCAAGGCCGTTGCTGCCAAGGATGGCATTACGGTTATCAAGGTAAAGAGCAGCAACAAACTCCTTTCATGGCACTTTATGCGCAAGCTCTTCGAGATATTCGAGTTCTACCAGGAGCCTGTGGATATGGTCGCTACGAGCGAAGTGGGTGTTTCCCTGACCATTGACAATGACAAGAATCTGCCCGATATTGTTCGTGCCTTGTCCGATATTGGAGATGTGACGGTCGATAAGGATATGGTCATCATCTGTATCGTAGGCGATATGGAGTGGGACAATGTGGGCTTCGAGGCTCGTATCATCAATGCGCTCAAAGGAGTGCCGGTTCGGATGATTTCATACGGCGGGAGCAACTACAACGTCTCGGTACTCGTCAAGGCGGAAGACAAGAAAAAAGCACTGATAGCATTGAGCAACAAGCTCTTCAATTCACGTGCGACAAAAGCC","6.40","-3.79","49477","LKVLKFGGTSVGDAERIRSVARLITSVKGRKIIVLSAMAGTTNSLVEIASHLVKRNVAQAKEVVQVLREKYHREINALYKRPDTLSAAKKAVDSLLDSLGHMCDVEGFTLFEEKRVLILGELMSTTMMQIYLQEMGAVVAMLPALEYMRTDKNAEPDKDYIRKHLLPMIEAHPDEDMLFLTEGYICRNAFGEIDNLQRGGSDYTASLIGAALNADEIQIWTDIDGMHNNDPRVVDVTAPVRRLHFEEAAELAHFGAKILHPTCIKPAKEKNIPVRLLNTMDPDAPGTLISLDTEKDCIKAVAAKDGITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVDMVATSEVGVSLTIDNDKNLPDIVRALSDIGDVTVDKDMVIICIVGDMEWDNVGFEARIINALKGVPVRMISYGGSNYNVSVLVKAEDKKKALIALSNKLFNSRATKA","2297243 2295906 [Shorter 2491 178 99]","TIGR ID: PG2189","aspartokinase-I","Cytoplasm","Numerous hits to aspartate kinases with gapped BLAST; e.g. residues 3-437 are 32% similar to probable aspartokinase (U67506)of Methanococcus jannaschii, residues 3-439 are 30% similar to aspartate kinase (AE000475) of E. coli, residues 3-406 are 29% similar to aspartate kinase (AE001309) of Chlamydia trachomatis.This sequence is similar to BT1375.","
InterPro
IPR001048
Domain
Aspartate/glutamate/uridylate kinase
G3DSA:3.40.1160.10\"[201-289]Tno description
PF00696\"[1-278]TAA_kinase
InterPro
IPR001341
Domain
Aspartate kinase region
TIGR00657\"[3-440]Tasp_kinases: aspartate kinase
PS00324\"[3-11]TASPARTOKINASE
InterPro
IPR012150
Family
Aspartate kinase
PIRSF000726\"[1-444]TAspartate kinase
noIPR
unintegrated
unintegrated
PTHR21499\"[105-444]TASPARTATE KINASE
PTHR21499:SF1\"[105-444]TASPARTATE KINASE


","BeTs to 14 clades of COG0527COG name: AspartokinasesFunctional Class: EThe phylogenetic pattern of COG0527 is amtKyqVcEBrHuj----inxNumber of proteins in this genome belonging to this COG is 1","***** IPB001341 (Aspartokinase, N-terminus) with a combined E-value of 3.9e-40. IPB001341A 3-14 IPB001341B 33-43 IPB001341C 114-151 IPB001341D 206-260 IPB001341E 377-422","Residues 295-441 are 32% similar to a (KINASE BIOSYNTHESIS ASPARTOKINASE) protein domain (PD001427) which is seen in O23152_ARATH.Residues 161-284 are 44% similar to a (KINASE TRANSFERASE BIOSYNTHESIS) protein domain (PD000447) which is seen in AK_METJA.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Mar 22 10:29:03 MST 2000","Thu Dec 4 15:19:27 2003","Thu Mar 22 16:12:47 MST 2001","Thu Mar 22 16:12:47 MST 2001","Thu Mar 22 16:12:47 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Fri Apr 7 11:05:39 MDT 2000","Thu Jul 24 14:08:18 2008","-53% similar to PDB:2CDQ CRYSTAL STRUCTURE OF ARABIDOPSIS THALIANA ASPARTATE KINASE COMPLEXED WITH LYSINE AND S-ADENOSYLMETHIONINE (E_value = 3.4E_60);-54% similar to PDB:2HMF Structure of a Threonine Sensitive Aspartokinase from Methanococcus jannaschii Complexed with Mg-ADP and Aspartate (E_value = 4.1E_58);-51% similar to PDB:2J0W CRYSTAL STRUCTURE OF E. COLI ASPARTOKINASE III IN COMPLEX WITH ASPARTATE AND ADP (R-STATE) (E_value = 2.0E_52);-51% similar to PDB:2J0X CRYSTAL STRUCTURE OF E. COLI ASPARTOKINASE III IN COMPLEX WITH LYSINE AND ASPARTATE (T-STATE) (E_value = 2.0E_52);","","","Residues 1 to 278 (E-value = 2.3e-29) place PG1916 in the AA_kinase family which is described as Amino acid kinase family (PF00696)","Thu Mar 22 16:12:47 MST 2001","34541758","","","1)Kikuchi Y, Kojima H, Tanaka T. Mutational analysis of the feedback sites of lysine -sensitive aspartokinase of Escherichia coli. FEMS Microbiol Lett 1999 Apr 1;173(1):211-5. PubMed: 10220897. 2) Scapin G, Blanchard JS. Enzymology of bacterial lysine biosynthesis. Adv Enzymol Relat Areas Mol Biol 1998;72:279-324.PubMed: 9559056.","","Fri Apr 7 12:51:28 MDT 2000","1","","","PG2189" "PG1917","2298002","2297265","738","ATGGATATTGTAAGTATGGCCGATAAAGCTCTTGTAGTGGAGATGAGAGATGTGACGCTCTGTCAGGAGGAAAACGTCATTTTTCAAAATTTGAATCTGACCCTTTCCGCCGGAGACTTCGTCTATCTGATAGGCTCAGTGGGATCGGGGAAGAGCACTTTGCTGAAGGCTTTGTATGCTGAGGTGCCTATCTCTGCCGGTTATGCCCGCGTGATAGATTATGATCTGGCAAAGTTGAAACGGAAGCAGTTGCCCTATCTGCGCAGGAATTTGGGCATTGTGTTTCAGGATTTCCAGTTGCTGAACGGACGTACTGTTGCGGAGAATTTGGATTTCGTTTTGCGAGCTACGGACTGGAAAAACCGAGCCGATCGCGAGCAGCGTATCGAGGAGGTTTTGACCCGTGTGGGAATGTCTCGGAAGGCTTATAAGAGACCGCACGAACTGTCCGGAGGGGAGCAACAACGTGTGGGTATAGCCAGAGCTTTGCTGGCGAAGCCTGCGTTGATCCTGGCCGACGAACCCACAGGCAACCTCGATTCGGTGACCGGATTGCAGATCGCTTCTCTGCTCTACGAAATCAGTAAGCAGGGCACTGCAGTACTTATGAGCACGCACAACAGCAGCCTGCTGTCGCATCTGCCGGCACGGACATTGGCCGTTCGTAAGAATGGCGATGCCTCCTCTTTGGTCGAGCTGAGTGCAGATGCTGTTTCAAGAAAAAATACGGAAATAGAT","9.10","2.68","27100","MDIVSMADKALVVEMRDVTLCQEENVIFQNLNLTLSAGDFVYLIGSVGSGKSTLLKALYAEVPISAGYARVIDYDLAKLKRKQLPYLRRNLGIVFQDFQLLNGRTVAENLDFVLRATDWKNRADREQRIEEVLTRVGMSRKAYKRPHELSGGEQQRVGIARALLAKPALILADEPTGNLDSVTGLQIASLLYEISKQGTAVLMSTHNSSLLSHLPARTLAVRKNGDASSLVELSADAVSRKNTEID","2298001 2297264","See ABC Transporters Analysis.TIGR ID: PG2190","cell-division ATP-binding protein ftsE","Inner membrane, Cytoplasm","Shows strong similarity (P > 1e-30) to L. lactis, S. coelicolor, B. halodurans, M. tuberculosis, M. leprae, H. influenzae and E. coli cell-division ATP-binding proteins","
InterPro
IPR003439
Domain
ABC transporter related
PD000006\"[148-191]TABC_transporter
PF00005\"[38-225]TABC_tran
PS00211\"[149-163]TABC_TRANSPORTER_1
PS50893\"[13-243]TABC_TRANSPORTER_2
InterPro
IPR003593
Domain
AAA+ ATPase, core
SM00382\"[37-226]TAAA
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[7-223]TG3DSA:3.40.50.300
PTHR19222\"[13-223]TPTHR19222
PTHR19222:SF36\"[13-223]TPTHR19222:SF36
SSF52540\"[15-223]TSSF52540


","BeTs to 3 clades of COG1135COG name: Uncharacterized ABC-type transport system ATPase component/cell division protein FtsEFunctional Class: D,RThe phylogenetic pattern of COG1135 is -------cEBrHuj---l-n-Number of proteins in this genome belonging to this COG is 1","***** IPB001617 (ABC transporters family) with a combined E-value of 2.8e-15. IPB001617A 43-58 IPB001617B 150-161","Residues 148-190 are 69% similar to a (ATP-BINDING TRANSPORT PROTEIN TRANSPORTER ABC) protein domain (PD000006) which is seen in O66733_AQUAE.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Tue Jul 29 15:39:36 2008","Tue Feb 13 13:11:49 MST 2001","Tue Feb 13 13:11:49 MST 2001","Tue Feb 13 13:11:49 MST 2001","Fri May 18 18:08:44 MDT 2001","Tue Feb 13 13:11:49 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 24-207 show 39% homology to ABC transport component, PG0618.","Tue Feb 13 13:11:49 MST 2001","Tue Jul 29 15:39:36 2008","-59% similar to PDB:1F3O Crystal structure of MJ0796 ATP-binding cassette (E_value = 1.8E_24);-59% similar to PDB:1L2T Dimeric Structure of MJ0796, a Bacterial ABC Transporter Cassette (E_value = 4.0E_24);-56% similar to PDB:1Q12 Crystal Structure of the ATP-bound E. coli MalK (E_value = 2.0E_23);-56% similar to PDB:1Q1B Crystal structure of E. coli MalK in the nucleotide-free form (E_value = 2.0E_23);-56% similar to PDB:1Q1E The ATPase component of E. coli maltose transporter (MalK) in the nucleotide-free form (E_value = 2.0E_23);","","","Residues 38 to 224 (E-value = 4e-49) place PG1917 in the ABC_tran family which is described as ABC transporter (PF00005)","Fri May 18 18:08:44 MDT 2001","34541759","","","","","","1","","","PG2190" "PG1918","2298384","2299394","1011","ATGTCGAAAAAATCGATCCTTCTGCTTTGCTGTTCGCTGTGCTTCATTTCTGCTACGAAGGCTGTGACCCCCGTCAGAAATGTGCGCAATAGCCAAGTGAACAGCAAAGCAAAGACCGAACGTACAAAGCCCTCGGACTCTGTACGGTACATTAGCAACATGATTGCAGATCGGCTGGAGTTCCGCAACAAGATTTCTTCCGAAAAAGAGGTAAGAAAAGCCGAATATGAAAATCGGCTGGCGATGGAAGCACTCAATTACCCTGCCATAGATTTATATGGTGAAGATTCTTGGAGCGAGTATGTAAACCCTTTCGTGGGTGCAGGAACCGATGTCGAAATTCCGAACTCCTATGACATTGATTGCTCTTCGTTCGTGATGCCCGTCGAAGATAAGCAGGTCACCTCTCAATTTGGCTACCGTCGGCGTTTCGGACGGATGCACTATGGTATTGATCTTTCAGTGAATCGTGGCGATACGATACGAGCAGCCTTTGACGGGAAAGTTCGTGTACGCAGCTATGAAGCGCGTGGCTATGGCTACTACATAGTCTTGCGCCATCCGAACGGACTGGAGACTGTGTACGGACACATGAGTCGCCAATTGGTAGACGAGAATCAGATCGTTCGAGCAGGACAACCGATCGGATTAGGAGGCAGCACGGGTCGAAGCACCGGTCCTCATCTTCACTTCGAGACCCGCTTCATGGGTATTCCCATCAATCCGAGTACCATTATAGACTTCGATAACGGAGTGCCGCTCCGAGACATTTACACATTCAAACGAGGGAGCAATTCTCGCTATGCAAAAGCCTCTAAGACTTCTTCTCGCTATGCAAAAAAAGGGAAGAAAGGCAGACAAGCTTCTTCTCCTATGACCTATAGAATCAAAAAAGGCGATACTTTGGAAACAATAGCCAAAAGGCACGGCACTTCTGTTCAGAAACTCTGTGCTACCAATGGCATTGGCAAGAGTAAAATTTTGACTCCGGGCAAAGCCTTGAGGATCAAA","10.70","25.21","37770","MSKKSILLLCCSLCFISATKAVTPVRNVRNSQVNSKAKTERTKPSDSVRYISNMIADRLEFRNKISSEKEVRKAEYENRLAMEALNYPAIDLYGEDSWSEYVNPFVGAGTDVEIPNSYDIDCSSFVMPVEDKQVTSQFGYRRRFGRMHYGIDLSVNRGDTIRAAFDGKVRVRSYEARGYGYYIVLRHPNGLETVYGHMSRQLVDENQIVRAGQPIGLGGSTGRSTGPHLHFETRFMGIPINPSTIIDFDNGVPLRDIYTFKRGSNSRYAKASKTSSRYAKKGKKGRQASSPMTYRIKKGDTLETIAKRHGTSVQKLCATNGIGKSKILTPGKALRIK","2298383 2299393","TIGR ID: PG2192","conserved hypothetical protein (possible membrane protein related to metalloendopeptidases","Extracellular, Outer membrane","Shows strong similarity to comserved hypothetical proteins in B. halodurans and N. meningitidis.","
InterPro
IPR002482
Domain
Peptidoglycan-binding LysM
PF01476\"[294-337]TLysM
SM00257\"[293-337]TLysM
InterPro
IPR002886
Family
Peptidase M23B
PTHR21666:SF7\"[3-248]TPeptidase_M23B
PF01551\"[146-242]TPeptidase_M23
InterPro
IPR011055
Domain
Duplicated hybrid motif
SSF51261\"[43-246]TDup_hybrid_motif
noIPR
unintegrated
unintegrated
G3DSA:3.10.350.10\"[290-337]TG3DSA:3.10.350.10
PTHR21666\"[3-248]TPTHR21666
SSF54106\"[290-336]TSSF54106


","BeTs to 10 clades of COG0739COG name: Membrane proteins related to metalloendopeptidasesFunctional Class: MThe phylogenetic pattern of COG0739 is -----QVCEBRHUJ--OL--XNumber of proteins in this genome belonging to this COG is 2","***** PF01551 (Peptidase family M23/M37) with a combined E-value of 1.3e-25. PF01551A 148-173 PF01551B 184-222","Residues 146-244 are 46% similar to a (PROTEIN PRECURSOR SIGNAL LIPOPROTEIN CONSERVED HYDROLASE) protein domain (PD001525) which is seen in YEBA_HAEIN.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Apr 5 15:01:05 MDT 2001","Thu Apr 5 15:01:05 MDT 2001","Tue Feb 13 13:16:31 MST 2001","Thu Apr 5 15:01:05 MDT 2001","Tue Feb 13 13:16:31 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Apr 5 15:01:05 MDT 2001","-56% similar to PDB:2GU1 Crystal structure of a zinc containing peptidase from vibrio cholerae (E_value = 1.7E_13);","","","Residues 162 to 245 (E-value = 4.9e-35) place PG1918 in the Peptidase_M37 family which is described as Peptidase family M23/M37 (PF01551)Residues 294 to 337 (E-value = 1.2e-12) place PG1918 in the LysM family which is described as LysM domain (PF01476)","Thu Apr 5 15:01:05 MDT 2001","34541760","","","","","","1","","","PG2192" "PG1919","2300493","2299717","777","ATGGAAGAGGTATCTCCCGACCACAGCACCATCAGTCGATTTCGTTCGGCACTGACAGAGTTGGGGCTCATGGACAAACTATTGGCGCAGTTTAACAAACAACTTTCCCGCCATCACATTTCGGTCAGGGAAGGGGTGCTTGTCGATGCAAGCCTTGTGGAGACGCCGCATAAACCCAACGGAAGCATTACGATTGAAGTCGCAGACGACAGAGAAGACAATCGGAGCGAGGAGGAAAAAGAGGCAGAGGAGGATTATCAAAAACAGGTTGTCCGTCAGCGTAAAGGGACGGATGAAGAAGCCCGTTGGGTTTACAAACAAAAGCGTTATCACTACGGATACAAAAAGCATTGTCTGACCAATGTTCAAGGCATTGTTCAAAAGGTGATAACGACAGCAGCGAATCGCAGTGACACGAAGGAGTTTATTCCGCTATTGCAGGGTGCAAACATACCTCAAGGCACAGCCGTCTTCGCGGACAAAGGATATGCTTGCGGGGAAAATCGTTCCTACCTGCAAACCCATCACCTTCAAGACGGCATCATGCACAAGGCACAACGCAACAGGGCATTGACCGAGGAAGAGAAGCAACGAAACAAAGCAATCAGTCGGATACGGAGCACCATCGAACGCACCTTTGGCAGTATTCGCCGGTGGTTTCATGGCGGACGATGTCGATACCGGGGACTTGCCAAGACCCATACTCAAAACATTCTTGAAAGCATCGCCTTTAATTTATACAGGACCCCGGGGATAATTATGTCCTCATCTCTAGGA","10.10","10.52","29725","MEEVSPDHSTISRFRSALTELGLMDKLLAQFNKQLSRHHISVREGVLVDASLVETPHKPNGSITIEVADDREDNRSEEEKEAEEDYQKQVVRQRKGTDEEARWVYKQKRYHYGYKKHCLTNVQGIVQKVITTAANRSDTKEFIPLLQGANIPQGTAVFADKGYACGENRSYLQTHHLQDGIMHKAQRNRALTEEEKQRNKAISRIRSTIERTFGSIRRWFHGGRCRYRGLAKTHTQNILESIAFNLYRTPGIIMSSSLG","2300492 2299716","Member of the IS5 family of elements. Reproduces the middle and C-terminal domains of full-length ISPg1 elements (e.g. PG1662).TIGR ID: PG2193","ISPg1 transposase fragment (IS1106-related transposase)","Cytoplasm","PG1919 is equivalent to the previously sequenced AJ130872 and AB015879 in GenBANK. Residues 6-248 are 36% similar to the IS1106 sequence of N.meningitidis (AE002488).","
InterPro
IPR002559
Domain
Transposase, IS4-like
PF01609\"[45-246]TTransposase_11


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 201-259 are 96% similar to a (TRANSPOSASE ORF7 INSERTION SEQUENCE IS1126-LIKE GENE) protein domain (PD187845) which is seen in Q9ZA61_PORGI.Residues 55-200 are 86% similar to a (TRANSPOSASE PLASMID PROTEIN ELEMENT) protein domain (PD004652) which is seen in Q9ZAD0_PORGI.Residues 8-54 are identical to a (TRANSPOSASE ORF7 INSERTION SEQUENCE) protein domain (PD187846) which is seen in Q9ZA61_PORGI.","","","","","","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","","","","Thu Jun 21 08:52:17 MDT 2001","Fri Feb 16 12:02:54 MST 2001","Thu Dec 21 14:52:29 MST 2000","Thu Dec 21 14:10:07 MST 2000","","Thu Jun 21 08:52:17 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1919 is virtually identical to PG1087, PG0763, PG1755, PG0686, PG0756, PG1798, PG1230, PG1184, PG0044, PG0689, PG1215, PG1665, PG0839, PG1895, all ISPg1 fragments that reproduce the middle and C-terminal residues of PG1267, PG0169, PG1050, PG1062, PG0740, PG0918, PG1662, PG1422, PG0420, PG0499, PG1099.Also, partial similarities to PG0732, PG0842, PG0883, PG1231, PG0730, PG1159, PG1608.","Fri Feb 16 12:02:54 MST 2001","Thu Jun 14 13:11:18 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 45 to 246 (E-value = 3.5e-39) place PG1919 in the Transposase_11 family which is described as Transposase DDE domain (PF01609)","Thu Jun 21 08:52:17 MDT 2001","","","Hanley,S.A., Aduse-Opoku,J. and Curtis,M.A.A 55-kilodalton immunodominant antigen of Porphyromonas gingivalisW50 has arisen via horizontal gene transferInfect. Immun. 67 (3), 1157-1171 (1999)Maley,J. and Roberts,I.S.Characterisation of IS1126 from Porphyromonas gingivalis W83: a new member of the IS4 family of insertion sequence elementsMicrobiol. Lett. 123 (1-2), 219-224 (1994)Shibata,Y., Hayakawa,M., Takiguchi,H., Shiroza,T. and Abiko,Y.Determination and characterization of the hemagglutinin-associatedshort motifs found in Porphyromonas gingivalis multiple geneproducts. J. Biol. Chem. 274 (8), 5012-5020 (1999)","Knight,A.I., Ni,H., Cartwright,K.A. and McFadden,J.J.Identification and characterization of a novel insertion sequence, IS1106, downstream of the porA gene in B15 Neisseria meningitidis.Mol. Microbiol. 6 (11), 1565-1573 (1992)","Wed Feb 14 11:32:02 MST 2001","Wed Feb 14 11:32:02 MST 2001","1","","29","PG2193" "PG1920","2302212","2301058","1155","ATGAGTACAAATATAAGCCTATTCGCCCAAGTTATCCGCCTGTTGCCTCGTCCGTTGATTAAGAAGCTCTCTACAGAGTTTCAAGTAAACAAACATAGCAAACACTTCACAGGGTGGCAACACTTAGTGAGCATGATTTTCAGCCAATTCTCAAGCTGTATCTCCTTACGCGAGATTAGTAATGGCTTACGCTCAGCCACAGGTAACCTCAACCACTTAGGCATATGCACAGCACCCTCTAAGTCCAATTTATCTTATCAGAACGAGCACCGTACCTCAGACTTCTTTCGAGCGTGCTATTATGCCTTGCTAGATTATTTCGGACAGCAGGGTATGGGGCAAGGGCGTAAGTTTCGTTTTAAGCAACCCGTCAAGCTTCTAGACTCTACGACCATTACCCTTTGCCTTGCCCTATACGATTGGGCTAAATACACACATACGAAAGGAGCTGTTAAGCTTCATACACTCTTAGACTTCAAGACTCTATTGCCTGAATATGTGCATATTAGTGATGGTAAAGGACATGATGGCAAGATGGCCAATTCTATTCCTATCCCAGCAGGAAGTATCGTCGTGGCTGACCGTGGCTATGCTGATACCGCCTTGCTCAATAGTTGGGACAGCACCCAAGTGAGTTTTGTAGTACGCCACCCAAGGTCCTTAAAATATGAGGTTATTCAAGAGTTGGAACTCCCAGAACATGGGCATCAGCAAATACTAGTAGATCAGAGAGTACGGCTCACAGGCGTTCAGACGCAAGGCAAGTACACTAAGCCATTGAGGCATATTGCCCTCTACAACGAGCAACATGGCGATGTCGTTGAGTTATTGACCAACATAGACACCCTTGCAGCAAGTAGTATAGCCTTGCTGTATCGTTCAAGATGGCTTATCGAGATTTTCTTTCGGAATTTGAAGCAACGCCTCAGCATGAAGGCCTTTCTTGGAACAACGCGCAATGCCGTAGAGGTGCAAATATGGACCGCTCTTATTACAATGCTTTTGATGGTCTATCTCAAGAGTATCGCCAAATATCGGTGGTGCTTGTCTAATCTTGTCTCTTCGCTAAGAATCAACACATTTACCAAGATGGATCTGATGCAATGGCTTAATGAGCCGTTTACGCCTCCGCCAGAGCCCGAAAATCAGCTCTTT","10.30","17.13","44056","MSTNISLFAQVIRLLPRPLIKKLSTEFQVNKHSKHFTGWQHLVSMIFSQFSSCISLREISNGLRSATGNLNHLGICTAPSKSNLSYQNEHRTSDFFRACYYALLDYFGQQGMGQGRKFRFKQPVKLLDSTTITLCLALYDWAKYTHTKGAVKLHTLLDFKTLLPEYVHISDGKGHDGKMANSIPIPAGSIVVADRGYADTALLNSWDSTQVSFVVRHPRSLKYEVIQELELPEHGHQQILVDQRVRLTGVQTQGKYTKPLRHIALYNEQHGDVVELLTNIDTLAASSIALLYRSRWLIEIFFRNLKQRLSMKAFLGTTRNAVEVQIWTALITMLLMVYLKSIAKYRWCLSNLVSSLRINTFTKMDLMQWLNEPFTPPPEPENQLF","2302211 2301057","Member of the IS5 family of IS elements.TIGR ID: PG2194","ISPg4 transposase","Inner membrane, Cytoplasm","PG1920 is equivalent to the previously sequenced AF148127 in GenBANK. See also AB009361, AB003149. Residues 20-337 are 27% similar to a transposase from B.subtilis (AB031551).","
InterPro
IPR002559
Domain
Transposase, IS4-like
PF01609\"[124-335]TTransposase_11
InterPro
IPR012337
Domain
Polynucleotidyl transferase, Ribonuclease H fold
SSF53098\"[185-350]TRNaseH_fold


","No hit to the COGs database.","***** PF01609 (Transposase (IS4 family)) with a combined E-value of 1.4e-08. PF01609B 288-309","Residues 271-336 are 45% similar to a (TRANSPOSASE PUTATIVE PLASMID ELEMENT) protein domain (PD003301) which is seen in Y4ZB_RHISN.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Fri Feb 9 08:49:37 MST 2001","Fri Feb 9 08:49:37 MST 2001","Fri Feb 9 08:49:37 MST 2001","Mon Dec 4 11:50:06 MST 2000","Tue Jun 5 15:06:44 MDT 2001","Tue Jun 5 15:06:44 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1920 is identical to PG0043, and is essentially identical to PG1461, PG0016, PG1114, PG1447, PG0868, PG0445, PG0205, and PG0162, all ISPg4 transposases.","Tue Jun 5 15:06:44 MDT 2001","Tue Jun 5 15:06:44 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 124 to 335 (E-value = 6.9e-43) place PG1920 in the Transposase_11 family which is described as Transposase DDE domain (PF01609)","Tue Jun 5 15:06:44 MDT 2001","34541761","","Sawada,K., Kokeguchi,S., Hongyo,H., Sawada,S., Miyamoto,M.,Maeda,H., Nishimura,F., Takashiba,S. and Murayama,Y.Identification by subtractive hybridization of a novel insertionsequence specific for virulent strains of porphyromonas gingivalis. Infect. Immun. 67 (11), 5621-5625 (1999)","Nagai,T., Phan Tran,L.S., Inatsu,Y. and Itoh,Y.A new IS4 family insertion sequence, IS4Bsu1, responsible forgenetic instability of poly-gamma-glutamic acid production inbacillus subtilis. J. Bacteriol. 182 (9), 2387-2392 (2000)","Fri Feb 9 08:49:37 MST 2001","Fri Feb 9 08:49:37 MST 2001","1","","29","PG2194" "PG1921","2302748","2303542","795","ATGAAAATAATGAATGTGATTTTGGCTTCTGTCTTAGTAGTCCTATTAGCCGGATGCAGCACCGTGCCGATTTCGGGGCGCAGTCAGATCATGCTGGTACAGGATTCGGAGATTCTGTCCTCCAGTGCCTTGCAGTATAAGCAGTTTCTCAGCAAGGTGAAAATCTCCAAAAATGCGACATCCACGGCACAGGTGCGACGAGTGGGACAAAAGGTAGCAGCCGCCACGATGCTCTATCTGAAGCAAAACGGATTGGGAGACATGGCCTCACAGATGAAATGGGAATTCAATGTTGTAGAAGACAAGGCTGTGAATGCTTTCTGTATGCCGGGCGGAAAGATTGTGGTCTATACCGGATTGCTCAAGTTGGTAGGCTCGGATGCCGAGCTGGCCACAGTGATTAGCCATGAGGTCAGCCATGCTGTGGCGAGACATTCCAACGAACGTATCAGTCAGGAATATCTACGCCAAATGGGTGGTAATATACTGGGCGCAGCAGTCTCCAACAAGTCAGCAGCACTGCAAACGGTCATCGGGCAGGCCTATGGCATTGGATCACAAGTGCTTATTACGCTACCCTACAATCGGAAACAGGAGTATGAAGCCGACAAAATAGGACTTGTCTTCATGGCGATGGCCGGTTATAACCCGAATGCGGCAATTACTTTTTGGCAAAAGATGGCTGCCCAAGGTAACGGGCGGGTAGAGTTTCTGAGTACGCATCCGAGCGATGCCAATCGGATAGCTGCCATTCGCCAATATATGCCGGAAGCAATGAAACATTATAAAAGCAAG","10.40","12.10","28807","MKIMNVILASVLVVLLAGCSTVPISGRSQIMLVQDSEILSSSALQYKQFLSKVKISKNATSTAQVRRVGQKVAAATMLYLKQNGLGDMASQMKWEFNVVEDKAVNAFCMPGGKIVVYTGLLKLVGSDAELATVISHEVSHAVARHSNERISQEYLRQMGGNILGAAVSNKSAALQTVIGQAYGIGSQVLITLPYNRKQEYEADKIGLVFMAMAGYNPNAAITFWQKMAAQGNGRVEFLSTHPSDANRIAAIRQYMPEAMKHYKSK","2302702 2303541","TIGR ID: PG2197","conserved hypothetical protein","Inner membrane, Extracellular","Shows strong (P < 1 e-30) similarity to conserved hypothetical proteins in V. cholerae, N. crassa and P. aeruginosa.","
InterPro
IPR001915
Family
Peptidase M48, Ste24p
PF01435\"[93-256]TPeptidase_M48
InterPro
IPR006025
Binding_site
Peptidase M, neutral zinc metallopeptidases, zinc-binding site
PS00142\"[133-142]?ZINC_PROTEASE
noIPR
unintegrated
unintegrated
PTHR22726\"[21-259]TPTHR22726
PS51257\"[1-19]TPROKAR_LIPOPROTEIN


","BeTs to 10 clades of COG0501COG name: Predicted Zn-dependent proteases (possible chaperone function)Functional Class: OThe phylogenetic pattern of COG0501 is AmTKYQ-CEBRhUJ-------Number of proteins in this genome belonging to this COG is 1","***** PF01435 (Peptidase family M48) with a combined E-value of 7.3e-14. PF01435A 101-110 PF01435B 115-140 PF01435C 194-209 PF01435D 240-251","Residues 91-253 are 36% similar to a (PROTEIN PROTEASE TRANSMEMBRANE HYDROLASE) protein domain (PD002296) which is seen in O30615_MYXXA.","","Thu Jun 14 13:11:27 MDT 2001","","Thu Jun 14 13:11:27 MDT 2001","Thu Jun 14 13:11:27 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:11:27 MDT 2001","Thu Jun 14 13:11:27 MDT 2001","","","Fri Mar 9 14:31:24 MST 2001","Tue Feb 13 13:23:48 MST 2001","Tue Feb 13 13:23:48 MST 2001","Thu Jun 21 08:51:00 MDT 2001","Thu Jun 21 08:51:00 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri Mar 9 14:31:24 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 78 to 256 (E-value = 5.4e-52) place PG1921 in the Peptidase_M48 family which is described as Peptidase family M48 (PF01435)","Thu Jun 21 08:51:00 MDT 2001","34541762","","","","","","1","","29","PG2197" "PG1922","2303756","2304634","879","ATGAAACAGAACTACTTCAAAAGAGTCTGCTCACTGCTTTGGCTGGTTTTACCCATGCTTATTATGCCATTGGAAGTAGCAGCTCAAGAGATTATTCCGAACGAAGAGGTGTTGGAATCATTGACTTTCGTTGCACCGGTTGAGGAGACAGACGCAATAGAGGCAGAGGTAGAAGCTCTGCAGGAGATAGTCGCTACTGAGGAGATTGCGGAGCAGGCTGTTCGTTCTTATACCTACACGGTCTATCGTGATGGCGTGAAGATTGCTTCAGGATTGACTGAGCCCACTTTTCTCGATGAAGATGTTCCTGCCGGCGAACATACCTACTGCGTAGAAGTACAGTATCAGGGAGGCGTATCCGACAAAGTATGCGTGGACGTAGAGGTGAAGGACTTCAAACCGGTTACCAATCTCACCGGAACTGCTTCCAATGACGAAGTTTCTTTGGACTGGGACGGTGTGGAAGAGAAAGCTGAAGAGCCGGCAAGTGATAAAGCAGTCAGCTACAACGTCTACAAGAATGGAACCTTGATCGGTAATACAGCTGAAACTCATTATGTGGAGACCGGTGTAGCCAATGGTACATACATCTACGAAGTGGAAGTAAAGTATCCTGACGGTGTATCTCCGAAGGTGGCTGTAACCGTGACCGTGACCAACAGCTCATTGAGCAATGTAGATGGACAGGCTCCTTACACATTGCGAGTAGAAGGCAAGAAGATTATTGCGGAAGCCCATGGTATGATCACGCTCTACGACATCAACGGACGTACCGTGGCCGTAGCCCCGAATCGATTGGAATACATGGCGCAAACCGGTTTCTATGCAGTGCGCTTCGATGTGGGGAATAAACACCATGTATCGAAAATACAAGTAAGA","4.30","-21.91","32259","MKQNYFKRVCSLLWLVLPMLIMPLEVAAQEIIPNEEVLESLTFVAPVEETDAIEAEVEALQEIVATEEIAEQAVRSYTYTVYRDGVKIASGLTEPTFLDEDVPAGEHTYCVEVQYQGGVSDKVCVDVEVKDFKPVTNLTGTASNDEVSLDWDGVEEKAEEPASDKAVSYNVYKNGTLIGNTAETHYVETGVANGTYIYEVEVKYPDGVSPKVAVTVTVTNSSLSNVDGQAPYTLRVEGKKIIAEAHGMITLYDINGRTVAVAPNRLEYMAQTGFYAVRFDVGNKHHVSKIQVR","2303755 2304633","TIGR ID: PG2198","hemagglutinin/gingipain-related protein","Cytoplasm, Periplasm, Extracellular","PG1922 has been previously sequenced in P.gingivalis, strain W50, and as AAD38410 in GenBank submitted by Ross,B., Barr,I., Patterson,M., Agius,C., Rothel,L., Margetts,M., Hocking,D. and Webb,E.","
noIPR
unintegrated
unintegrated
signalp\"[1-28]?signal-peptide
tmhmm\"[10-28]?transmembrane_regions


","No hit to the COGs database.","***** PF01364 (Peptidase family C25) with a combined E-value of 2.6e-14. PF01364F 197-250 PF01364G 251-289","Residues 68-130 are 58% similar to a (PROTEASE PRECURSOR SIGNAL THIOL HEMAGGLUTININ REPEAT) protein domain (PD002028) which is seen in Q51817_PORGI.Residues 215-293 are 43% similar to a (PROTEASE PRECURSOR THIOL SIGNAL) protein domain (PD004371) which is seen in HAGA_PORGI.Residues 98-253 are 30% similar to a (PROTEIN PRECURSOR SIGNAL SURFACE C ALPHA-ANTIGEN ANTIGEN) protein domain (PD011934) which is seen in Q9Z4N7_ENTFA.Residues 77-122 are 65% similar to a (PROTEASE THIOL REPEAT PRECURSOR) protein domain (PD013956) which is seen in Q51839_PORGI.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Fri May 18 18:14:03 MDT 2001","Tue Feb 13 13:37:00 MST 2001","Tue Feb 13 13:37:00 MST 2001","Thu Mar 29 17:08:48 MST 2001","Tue Feb 13 13:37:00 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","There are four domains in PG1922 which show strong similarity to domains in other related hemagglutinins and gingipains. These domains are: 68-152, 77-160, 152-222, and 168-234. They show strong similarity to one or many domains in:PG1605 porphypain polyprotein; lys-X proteinase/hemagglutinin, PG1768 arginine-specific cysteine proteinase: gingipain, PG1602 hemagglutinin/adhesin precursor; hagA,PG1606 hemagglutinin-related protein, PG1164 tonB linked outer membrane receptor,PG0461 arginine-specific cysteine proteinase: gingipain R2.","Thu Mar 29 17:08:48 MST 2001","Thu Mar 29 17:08:48 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Mar 29 17:08:48 MST 2001","5052029","Tue Feb 13 13:37:00 MST 2001","See Proteases/Hemagglutinin Analysis
Ross,B., Barr,I., Patterson,M., Agius,C., Rothel,L., Margetts,M.,Hocking,D. and Webb,E., P. gingivalis polypeptides and nucleic acids, Patent: Australia AU 98/01023-PCT 10-DEC-1998","","Sun Jun 24 14:16:05 MDT 2001","","1","","29","PG2198" "PG1923","2306816","2304882","1935","ATGATCTCCGTCAATAACCTGACTGTCGATTTCGGCACCCGTCTGCTCTTCGATCAGGTATCATTCGTCATCAACAGGCGCGACCGTATCGCTCTTGTAGGGAAGAACGGTGCCGGCAAGAGTACGCTGCTCAAGCTGATTGCCGGCATGGAAGAACCGACATCCGGACACATAGCACGCCCCAAGGGGATCCGCATAGGCTATCTGCCGCAGGTGATGCGTTTGCAGGACGGACACACGGTTTACGAAGAGGTCGAGCAGGCTTTCAACGATATTCGCCAAATAGAGGAAGAGATACGGCGTCTGTCCGATGAAATGGCCGGACGTACGGACTACGAATCGGATGACTATATCCGACTGATAGAGCATTATACGAATATGAGCGAGACCCTCTCTCTCATGCAGCAGGGCAACTATCATGCTGCGATCGAACAGACATTGATCGGTCTGGGCTTCGGCCGAGAGGACTTCCACCGCCCCACAGCCGATTTCAGCGGAGGATGGCGTATGCGGATAGAGCTGGCCAAACTTCTGCTCCAACGCCCCGAAGTTTTGCTGCTCGACGAGCCGACCAATCACCTCGACATCGAATCCATCGGCTGGCTGGAGCAGTTCATCGCCACCAATGCAGGAGCCGTTATCCTGGTGTCGCACGACAGGGCATTCATCGACAATACCACGACACGCACTATCGAAATAGAACTGGGACATATATACGACTACAAGACCAACTACAGCCACTATGTGGAGCTGCGCGAAGAGCGGCTGCGACAGCAGATGCGTGCCTACGAGAATCAGCAGAAGATGATCCGCGATACGGAGGACTTCATCGAACGATTCAGATACAAGGCCACGAAGTCCGTACAGGTACAGAGCCGGATCAAACAGTTGGAGAAAGTAGAGCGCGTGGAGATAGACGAGCGGGATCGTTCGGCATTTCACTTCCGCTTTATCCCGGCACAGCCTTCCGGCAGTTATCCGCTAATAGTGGATGATTTGGCCAAGGCTTATGGCGATCACCAGGTGTTTTCCGGAGCTACATACACCATCGAAAGAGGCGAAAAGGTGGCTTTCGTAGGCAAAAACGGTGCCGGCAAAAGTACCATGGTCAAGTGTATCATGGGAGAGCTGACAGACTACACCGGCAAGCTCGAACTGGGGCACAACGTGCAGCTGGGCTACTTTGCCCAAAACGAAGCCCAAGAGCTAAGAGGGGATCTCACGGTATTCGACACGATAGACCGTGAGGCCGTGGGCGACATCCGTCTGCGCCTGAACGATTTGCTCGGGGCTTTTCTCTTCGGGGGCGAAGCATCGGAAAAGAAAGTAAGTGTCCTGAGTGGAGGAGAACGAGCACGATTGGCTATTATCAGGCTTTTGCTACAGCCGGCTAACTTCCTTATTCTCGATGAGCCGACCAATCACCTCGATATGCGCTCGAAGGATGTACTGAAAGAGGCGATCAAGAACTTCGATGGGACTGTCATCGTAGTATCTCACGACCGTGAGTTCCTCGATGGGCTTGTCAGCAAGGTGTATGAATTTGCAGATGGACAGGTGAACGAACACCTCGGAGGTATATACGACTATCTCCGGACCCGCCGTATGCAGACGCTGACAGAGCTGGAGCGAACCACTACGATCGAAACAAAAACCACACGGGAGGCTATACCTGAAACGGAAGCCAAAGCGGACTACCGTCGGCAAAAGGAGGTAGCCAAACAGCTGCGCACGTTGGAGCGAACCGTAGCAACCTGCGAGGAGCGGATCGGAAAATTGGAGTCGGAATTACAGGCAATAGAGATGCTACTGCAAGATCCGAAACATGCGACTGACGCGAATCTGTTCGAGCGATACGCCGGCATGAAACAAGAACTCGAAAAGGCCATGGAGGACTGGGAACAGGCTTCCGAAGCTTTATCCGAAGCCCAAGGA","5.20","-20.14","73758","MISVNNLTVDFGTRLLFDQVSFVINRRDRIALVGKNGAGKSTLLKLIAGMEEPTSGHIARPKGIRIGYLPQVMRLQDGHTVYEEVEQAFNDIRQIEEEIRRLSDEMAGRTDYESDDYIRLIEHYTNMSETLSLMQQGNYHAAIEQTLIGLGFGREDFHRPTADFSGGWRMRIELAKLLLQRPEVLLLDEPTNHLDIESIGWLEQFIATNAGAVILVSHDRAFIDNTTTRTIEIELGHIYDYKTNYSHYVELREERLRQQMRAYENQQKMIRDTEDFIERFRYKATKSVQVQSRIKQLEKVERVEIDERDRSAFHFRFIPAQPSGSYPLIVDDLAKAYGDHQVFSGATYTIERGEKVAFVGKNGAGKSTMVKCIMGELTDYTGKLELGHNVQLGYFAQNEAQELRGDLTVFDTIDREAVGDIRLRLNDLLGAFLFGGEASEKKVSVLSGGERARLAIIRLLLQPANFLILDEPTNHLDMRSKDVLKEAIKNFDGTVIVVSHDREFLDGLVSKVYEFADGQVNEHLGGIYDYLRTRRMQTLTELERTTTIETKTTREAIPETEAKADYRRQKEVAKQLRTLERTVATCEERIGKLESELQAIEMLLQDPKHATDANLFERYAGMKQELEKAMEDWEQASEALSEAQG","2306815 2304881","See ABC Transporters Analysis.TIGR ID: PG2199","ABC transporter (ATP-binding protein)","Cytoplasm, Inner membrane","Showed strong similarity (P < 1e-30) with ATP-binding ABC transporter proteins of many organisms including Synechocystis sp. and E. coli.This sequence is similar to BT3809.","
InterPro
IPR003439
Domain
ABC transporter related
PD000006\"[164-206]T\"[446-488]TABC_transporter
PF00005\"[29-236]T\"[353-518]TABC_tran
PS00211\"[164-178]?\"[446-460]?ABC_TRANSPORTER_1
PS50893\"[2-260]T\"[328-542]TABC_TRANSPORTER_2
InterPro
IPR003593
Domain
AAA+ ATPase, core
SM00382\"[26-237]T\"[352-526]TAAA
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[1-239]T\"[290-520]TG3DSA:3.40.50.300
PTHR19211\"[134-606]TPTHR19211
PTHR19211:SF11\"[134-606]TPTHR19211:SF11
SSF52540\"[4-247]T\"[328-544]TSSF52540


","BeTs to 10 clades of COG0488COG name: ATPase components of ABC transporters with duplicated ATPase domainsFunctional Class: RThe phylogenetic pattern of COG0488 is ----Y--CEBRHuj--olinxNumber of proteins in this genome belonging to this COG is 3","***** IPB001617 (ABC transporters family) with a combined E-value of 5.7e-11. IPB001617A 32-47 IPB001617B 447-458 IPB001617B 165-176","Residues 342-445 are 28% similar to a (ATP-BINDING PROTEIN ABC TRANSPORTER YKPA) protein domain (PD030338) which is seen in O83810_TREPA.Residues 266-343 are 38% similar to a (PROTEIN ATP-BINDING TRANSPORTER ABC) protein domain (PD004492) which is seen in P73758_SYNY3.Residues 437-529 are 33% similar to a (ATP-BINDING PROTEIN NUCLEOTIDE BINDING) protein domain (PD068705) which is seen in Q9ZC01_STRCO.Residues 18-58 are 56% similar to a (ATP-BINDING TRANSPORT PROTEIN TRANSPORTER ABC) protein domain (PD000005) which is seen in SAPF_HAEIN.Residues 164-206 are 69% similar to a (ATP-BINDING TRANSPORT PROTEIN TRANSPORTER ABC) protein domain (PD000006) which is seen in P73758_SYNY3.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Fri Dec 26 13:48:07 2003","Tue Feb 13 13:55:29 MST 2001","Fri Dec 26 13:48:07 2003","Tue Feb 13 13:55:29 MST 2001","Fri May 18 18:15:44 MDT 2001","Tue Feb 13 13:55:29 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1923 is similar to many ABC transporter proteins (in order of decreasing similarity), PG1084, PG1929, PG1533, PG1477, PG1211, PG0618, PG1451, PG1497, PG0921, PG0584, PG1048, PG0605, PG0254, PG0566, PG1049, PG1467, and PG0903. Also weakly similar to a cell-division ATP-binding protein ftsE, PG1917. Residues 1-638 are 31% similar to PG1084.","Tue Jun 5 15:19:32 MDT 2001","Fri May 18 18:15:44 MDT 2001","-41% similar to PDB:2IW3 ELONGATION FACTOR 3 IN COMPLEX WITH ADP (E_value = 4.9E_26);-41% similar to PDB:2IWH STRUCTURE OF YEAST ELONGATION FACTOR 3 IN COMPLEX WITH ADPNP (E_value = 4.9E_26);-41% similar to PDB:2IX3 STRUCTURE OF YEAST ELONGATION FACTOR 3 (E_value = 4.9E_26);-40% similar to PDB:1YQT RNase-L Inhibitor (E_value = 7.8E_16);-45% similar to PDB:1OXS Crystal structure of GlcV, the ABC-ATPase of the glucose ABC transporter from Sulfolobus solfataricus (E_value = 3.6E_13);","","","Residues 27 to 236 (E-value = 1.4e-46) place PG1923 in the ABC_tran family which is described as ABC transporter (PF00005)Residues 353 to 518 (E-value = 1.5e-37) place PG1923 in the ABC_tran family which is described as ABC transporter (PF00005)","Fri Dec 26 13:48:07 2003","34541763","","","","","","1","","29","PG2199" "PG1924","2308900","2306816","2085","ATGACATTCAAACGCTCCTTATTCTTCCTCCTGCTCCTGCTCTCCGTGGCCACAGCTCGGGCGCAGATAGACGTCGATCGGGTGATCACGATCGGGCGCAATGCTCTCTACTTCAACGACTACGTGGTGAGCATCGGGTACTTCAACCAAGTGGTAGGCCTGCGCCCGTGGATGGCGGAACCTTATTTCTATCGGGGAATAGCCAAAATCAGTCTGGAAGACTATACAGGGGCGGAAGCCGATGCTTCGGCCTGCCTGCAGCGCAATGCGCTCATCCCCAAAGCATATCTTCTTCGGGGCGTGGCACGGCAGAATCTGGGCAAAATCGATTCAGCCATTCAGGACTACCGTCGCGGATTGGAGCTGATGCCGAACGATGAGGGCATGCTGGTGAATCTGACCGGAGTGCTCACCGACAGCAAACGCTATGCCGAAGCACGGGAAGGGGTAGCCGAACTGCTCAAATTCTACCCCAAAAGCAAGCAAGCACATATAGCTCTCAGCGCGATAGAGCTGGGCGAGCAGGATACCGTCGCAGCCATTCGCGAACTGAACGAGGTACTTCGGATGGACTCTCTCTTTGCTCCTGCCTATTCGCAGATGGCCATGCTGCACCTCAAGAGCAAGCGCAACGCAGAGGCTATGGCAGCCCTGGACAAAGCAATAGAATTGGAGCCGAGCGAACTGTCCAACTATATCAACCGCGGTGTCATCCGCTACCAATCGAACGACTTGCGTGGAGCCATGGACGACTACAGCCACGTCGTTCGCCAAAAGCCGAACGACAAGTTGGCACGTTTCAACCGTGCCTTGCTCCGCTCTTACCTCGGTGACGTGAACAATGCCATCGAGGACTTCGATGTAGTCATCCGTCTGGAGCCGGAGAACTATCATGCACTCTACAACCGTGCCATCCTCCTCACGCAGATCAACGAGAACCGAAAAGCCATTACCGACTTCGACAAAGTGCTGGGACACTATCCTGACTTTGTCGTCGGCTACTATGCTCGCTCCCAAGCCAAAAAGGCATTGGGCGACACTCGCGGAGCCGAACGGGACTACTGGCGCGCTTTCGACATAGAAAAAGCGGCACAGAGCAAGACAAAAAAAACGAAAAAAAGCAGCTCTTCGACTTCGACCAAAGAGACACGTGAGGATAGCGACGAAACGATAGAGAAGTTCAACCTGCTCGTCGTATCCGAGAAATCCTCCGAGAAGCGCACACGCTACTCCAGTCGGATACGTGGGCGGATTCAGGACAACGATGTAGAGGTACAGCCCTCGCCGCTATTCGTCCTCAGCTACTACGAGCAGTCCTCTTCCGAAGAGGTGCCGCGCGTCTACTACTCGGAAGCCATTGCTCGCTTCAACGACAAAAAGGTTCTGCCCAAGCGACTCAAACCGATCAACCGTGAGGTAGCTCTGAGTCAAGAGCAGGTGGCATATCACGAACAGGACATAACGGAAATATCCGAGAGGACTGCCGGCAATGCAGATCTGTGCTTCCGTCGCGCTTTGGACTATATGCTGATACAGAATTTGGAGCAGGCCATCGTCGATTTCGATCAGGCTGTAGAGCTGAACAAGCAGTTTGCCCTCGCATACTTCGGAAGAGCCATTGCACGTGCCAAGCTGGTCGAGGCCCGTCAGGGAGCCTCCTTTATCCACCAAGAGGCCGAAACGGTGAATGCCATGACAAAAGCTCTGATCACGACACCGCGAACCAATGCAATGGGAGTGCCGGCGGCTGCCGAATCCCCCGAGCGTAAGCCTGCCATATCGGATGTGGACGGTGAGCTGGTGATGCGCGACCTGAACCGCACGATCGAGCTGGATCCGAATTTTGCCTATGCCTACTACAATCGTGCCGTGCTACTGGCCAGACGAGGCGATACGGATGCTGCCCTGTCGGACTACGACCGTGCCATCAAAGCCTATCCGGAGTTTGCCGATGCCTATTTCAATCGCGGCCTGCTGTTGCTTTCGCGCGGAAAGGCCAAAGAAGGCATCGCCGATCTGAGTCGGGCAGGCGAATACGGGCTCTACAAGGCGTACAACATCATCAAACGAATGAGCACGAAGTCA","9.10","5.67","78709","MTFKRSLFFLLLLLSVATARAQIDVDRVITIGRNALYFNDYVVSIGYFNQVVGLRPWMAEPYFYRGIAKISLEDYTGAEADASACLQRNALIPKAYLLRGVARQNLGKIDSAIQDYRRGLELMPNDEGMLVNLTGVLTDSKRYAEAREGVAELLKFYPKSKQAHIALSAIELGEQDTVAAIRELNEVLRMDSLFAPAYSQMAMLHLKSKRNAEAMAALDKAIELEPSELSNYINRGVIRYQSNDLRGAMDDYSHVVRQKPNDKLARFNRALLRSYLGDVNNAIEDFDVVIRLEPENYHALYNRAILLTQINENRKAITDFDKVLGHYPDFVVGYYARSQAKKALGDTRGAERDYWRAFDIEKAAQSKTKKTKKSSSSTSTKETREDSDETIEKFNLLVVSEKSSEKRTRYSSRIRGRIQDNDVEVQPSPLFVLSYYEQSSSEEVPRVYYSEAIARFNDKKVLPKRLKPINREVALSQEQVAYHEQDITEISERTAGNADLCFRRALDYMLIQNLEQAIVDFDQAVELNKQFALAYFGRAIARAKLVEARQGASFIHQEAETVNAMTKALITTPRTNAMGVPAAAESPERKPAISDVDGELVMRDLNRTIELDPNFAYAYYNRAVLLARRGDTDAALSDYDRAIKAYPEFADAYFNRGLLLLSRGKAKEGIADLSRAGEYGLYKAYNIIKRMSTKS","2309292 2306815 [Bad Olap 2502 355 0]","PG1924 contains a TPR-repeat domain.TIGR ID: PG2200","TPR-repeat-containing protein","Outer membrane, Cytoplasm","Residues 24-361 are 27% similar to hypothetical protein from Mesorhizobium loti (gi|13472041|).This sequence is similar to BT0421.","
InterPro
IPR001440
Repeat
Tetratricopeptide TPR_1
PF00515\"[93-126]T\"[195-228]T\"[229-262]T\"[263-296]T\"[297-330]T\"[498-531]T\"[616-649]T\"[650-676]TTPR_1
InterPro
IPR011990
Domain
Tetratricopeptide-like helical
G3DSA:1.25.40.10\"[25-133]T\"[136-362]T\"[484-676]TTPR-like_helical
InterPro
IPR013026
Domain
Tetratricopeptide region
SM00028\"[59-92]T\"[93-126]T\"[195-228]T\"[229-262]T\"[263-296]T\"[297-330]T\"[498-531]T\"[616-649]TTPR
PS50005\"[93-126]T\"[127-160]T\"[195-228]T\"[229-262]T\"[263-296]T\"[297-330]T\"[498-531]T\"[616-649]T\"[650-683]TTPR
PS50293\"[25-364]T\"[498-531]T\"[602-683]TTPR_REGION
noIPR
unintegrated
unintegrated
PTHR23083\"[17-354]TPTHR23083
PTHR23083:SF20\"[17-354]TPTHR23083:SF20
SSF48452\"[29-363]T\"[489-679]TSSF48452


","BeTs to 12 clades of COG0457COG name: TPR-repeat-containing proteinsFunctional Class: RThe phylogenetic pattern of COG0457 is AMTKYQVCEB-HUJ--OLINXNumber of proteins in this genome belonging to this COG is 21","No significant hit to the Blocks database.","Residues 502-678 are 28% similar to a (PROTEIN REPEAT TPR DOMAIN NUCLEAR PUTATIVE RECEPTOR) protein domain (PD000069) which is seen in P72802_SYNY3.","","Thu Jun 14 13:13:07 MDT 2001","","Thu Jun 14 13:13:07 MDT 2001","Thu Jun 14 13:13:07 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:13:07 MDT 2001","Thu Jun 14 13:13:07 MDT 2001","","Thu Jun 21 08:44:18 MDT 2001","Tue Dec 2 16:21:10 2003","Tue Dec 2 16:21:10 2003","Tue Feb 13 14:00:01 MST 2001","","Thu Jun 21 08:44:18 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 62-354 show 21% similarity to PG0878, O-linked GlcNAc transferase.","Thu Jun 21 08:48:34 MDT 2001","Thu Apr 5 15:07:07 MDT 2001","-40% similar to PDB:1W3B THE SUPERHELICAL TPR DOMAIN OF O-LINKED GLCNAC TRANSFERASE REVEALS STRUCTURAL SIMILARITIES TO IMPORTIN ALPHA. (E_value = 1.8E_10);","","","Residues 93 to 126 (E-value = 1.2e-07) place PG1924 in the TPR family which is described as TPR Domain (PF00515)Residues 195 to 228 (E-value = 1.8e-05) place PG1924 in the TPR family which is described as TPR Domain (PF00515)Residues 498 to 531 (E-value = 3.6e-06) place PG1924 in the TPR family which is described as TPR Domain (PF00515)Residues 616 to 649 (E-value = 7.2e-08) place PG1924 in the TPR family which is described as TPR Domain (PF00515)","Tue Dec 2 16:21:10 2003","34541764","","","","","","1","","29","PG2200" "PG1925","2309505","2308939","567","ATGCTCCTTCCTATCTACCTATACGGACATCCGGTGCTGAGAAAAGTAGCAGAAGATATAACTCCGGACTATCCCAAACTGAAAGAGCTGATAGCCAACATGACGGAGAGCATGTACCACTCCGACGGCATTGGCCTGGCAGCTCCTCAAATAGGCTTACCCATCAGGGTACTCGTGATCGATGCCGATCCGCTGAAAGAGGATTATCCCGAATGTGCCGGATTCAAGCGCGTGATGATCAACGCCCATATCGAAGAGCGAGGCGAAGATCTCTGCACCGAATACGAAGGTTGCCTCAGCCTTCCGGCCATACACGAGAAGGTGGAACGCCCCACCTCCATCCGTATTCGCTATGTGGACGAGGACTTTCAGCCGCACGAAGAGGTGCTCCAGGGCTTTGCGGCAAGAGTGGTACAGCACGAATACGACCATATCGACGGGAAGCTCTTCATCGACCACATCAGTCCGATACGCAAGCAGCTGATCAAAGGGAAGCTGCAGAATATCATCAAAGGCAAAGTACGGACTTCGTACCGCGTAGTGACAGCTCCGACCGGCAAAAAACGG","6.90","-0.21","21540","MLLPIYLYGHPVLRKVAEDITPDYPKLKELIANMTESMYHSDGIGLAAPQIGLPIRVLVIDADPLKEDYPECAGFKRVMINAHIEERGEDLCTEYEGCLSLPAIHEKVERPTSIRIRYVDEDFQPHEEVLQGFAARVVQHEYDHIDGKLFIDHISPIRKQLIKGKLQNIIKGKVRTSYRVVTAPTGKKR","2309612 2308938 [Shorter 2501 355 99]","TIGR ID: PG2201","polypeptide deformylase (formylmethionine deformylase)","Cytoplasm","Significant hits to polypeptide deformylase proteins with gappedBLAST; e.g. residues 5-171 are 40% similar to polypeptide deformylase (AE001808) of Thermotoga martima, residues 1-173 are 38% similar to polypeptide deformylase (AE000696) of Aquifex aeolicus, residues 1-181 are 36% similar to polypeptide deformylase (AE001308) of Chlamydia trachomatis.","
InterPro
IPR000181
Family
Formylmethionine deformylase
PD003844\"[14-147]TFmet_deformylase
PR01576\"[32-61]T\"[96-107]T\"[108-126]T\"[127-156]TPDEFORMYLASE
G3DSA:3.90.45.10\"[1-174]TFmet_deformylase
PIRSF004749\"[2-176]TPep_def
PTHR10458\"[6-179]TFmet_deformylase
PF01327\"[2-160]TPep_deformylase
TIGR00079\"[2-168]Tpept_deformyl
SSF56420\"[1-176]TFmet_deformylase


","BeTs to 12 clades of COG0242COG name: N-formylmethionyl-tRNA deformylaseFunctional Class: JThe phylogenetic pattern of COG0242 is -----qvceBrhujgpolinxNumber of proteins in this genome belonging to this COG is 1","***** PF01327 (Polypeptide deformylase) with a combined E-value of 4.6e-40. PF01327A 32-61 PF01327B 79-93 PF01327C 95-107 PF01327D 108-154","Residues 5-150 are 38% similar to a (DEFORMYLASE PROTEIN POLYPEPTIDE PDF) protein domain (PD003844) which is seen in DEF_SYNY3.","","Thu Jun 14 13:13:17 MDT 2001","","Thu Jun 14 13:13:17 MDT 2001","Thu Jun 14 13:13:17 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:13:17 MDT 2001","Thu Jun 14 13:13:17 MDT 2001","","","Tue Apr 17 14:50:08 MDT 2001","Thu Jun 21 08:41:13 MDT 2001","Tue Apr 17 14:50:08 MDT 2001","Thu Jun 21 08:37:56 MDT 2001","Thu Jun 21 08:37:56 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Apr 17 14:50:08 MDT 2001","-61% similar to PDB:1IX1 Crystal Structure of P.aeruginosa Peptide deformylase Complexed with Antibiotic Actinonin (E_value = 3.5E_29);-61% similar to PDB:1LRY Crystal Structure of P. aeruginosa Peptide Deformylase Complexed with Antibiotic Actinonin (E_value = 3.5E_29);-59% similar to PDB:1LME Crystal Structure of Peptide Deformylase from Thermotoga maritima (E_value = 1.0E_28);-61% similar to PDB:1N5N Crystal Structure of Peptide Deformylase from Pseudomonas aeruginosa (E_value = 1.0E_28);-61% similar to PDB:1S17 Identification of Novel Potent Bicyclic Peptide Deformylase Inhibitors (E_value = 1.0E_28);","","","Residues 2 to 160 (E-value = 3.7e-49) place PG1925 in the Pep_deformylase family which is described as Polypeptide deformylase (PF01327)","Thu Jun 21 08:37:56 MDT 2001","34541765","","","Mazel D, Coic E, Blanchard S, Saurin W, Marliere P. A survey of polypeptide deformylase function throughout the eubacterial lineage. J Mol Biol 1997 Mar 14;266(5):939-49. PubMed: 9086272.","","Fri Apr 7 10:15:22 MDT 2000","1","","29","PG2201" "PG1926","2310026","2309613","414","ATGGGACGAATACTGGCTATCGACTACGGACGCAAAAGGACGGGACTTGCCGTCACCGACCCACTGAAAATCATTCCGGGCGGACTGACCACTGTACCTACCCATACGCTGCTGGACTTCCTGCGGGACTACGTCAGCCGGGAGCCGGTGGAGCGTTTCGTGCTGGGACTGCCACGCCGGATGAACTACGAAGAGTCCGAATCGATGACCTATATCCGCCCCTTCGCCGTTAAACTTGCCCAAGCCTTCCCCTCTATACCTATAACGTACGTGGACGAACGCTTCACCTCGCGCATGGCACAGAGGACTATTCTGGAAGCCGGGATAGGCAAGATGAAACGGCGAGACAAGGCTCTGGTGGATGAGGTCAGTGCGGTCATCATCCTACAGTCGTATCTGGACAATCCCGACAGA","10.40","4.23","15714","MGRILAIDYGRKRTGLAVTDPLKIIPGGLTTVPTHTLLDFLRDYVSREPVERFVLGLPRRMNYEESESMTYIRPFAVKLAQAFPSIPITYVDERFTSRMAQRTILEAGIGKMKRRDKALVDEVSAVIILQSYLDNPDR","2310253 2309612","TIGR ID: PG2202","conserved hypothetical protein (possible endonuclease)","Cytoplasm","This sequence is similar to CT184.Numerous weakly significant hits in gapped BLAST to hypothetical proteins; e.g. residues 1-134 are 36% similar to U46071 of Rhodobacter capsulatus, residues 2-135 are 35% similar to AL357523 of Streptomyces coelicolor.","
InterPro
IPR005227
Family
Resolvase, holliday junction-type, YqgF-like
PF03652\"[2-135]TUPF0081
TIGR00250\"[5-134]THJR_YqgF
InterPro
IPR006641
Domain
Resolvase, RNase H-like fold
SM00732\"[2-100]TYqgFc
InterPro
IPR012337
Domain
Polynucleotidyl transferase, Ribonuclease H fold
SSF53098\"[1-138]TRNaseH_fold
noIPR
unintegrated
unintegrated
G3DSA:3.30.420.140\"[2-134]TG3DSA:3.30.420.140


","BeTs to 9 clades of COG0816COG name: Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)Functional Class: LThe phylogenetic pattern of COG0816 is -----qvcebrhujgp--inxNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 3-135 are 34% similar to a (PROTEIN INTERGENIC REGION MG291.1) protein domain (PD008222) which is seen in YE98_AQUAE.","","Thu Jun 14 13:14:21 MDT 2001","","Thu Jun 14 13:14:21 MDT 2001","Thu Jun 14 13:14:21 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:14:21 MDT 2001","Thu Jun 14 13:14:21 MDT 2001","","","Wed Apr 18 17:35:51 MDT 2001","Thu Jun 21 08:37:17 MDT 2001","Wed Mar 28 14:16:30 MST 2001","","Thu Jun 21 08:33:57 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found.","Thu Jun 21 08:37:17 MDT 2001","Wed Mar 28 14:16:30 MST 2001","-54% similar to PDB:1VHX Crystal structure of Putative Holliday junction resolvase (E_value = 1.2E_12);","","","Residues 2 to 135 (E-value = 1.8e-32) place PG1926 in the UPF0081 family which is described as Uncharacterised protein family (UPF0081) (PF03652)","Thu Jun 21 08:33:57 MDT 2001","34541766","","","","","","1","","29","PG2202" "PG1927","2310524","2316247","5724","ATGATGAACATACGAATTATTTTCAGTCTATTTCTTGCTTTGACTATCGGTCTTACTGCAATGAATGCACAGAATCCTTATGCGACCTTGGAGAAGGAGCTGGAACAATACCGTCAGGAACGCCGTCCGCGCAAGGTGGCCGAGACGCTGAAGAAGATCAGGGTGATGGCCGAATCTCGCCGTGATGTCCCCATGCTCCTGCACAGCATGTTCCTCTATGACGATCCGGAGAACGACATCAACGACTATCCTGAGGAGCCGTTGATGAACGACCTCGACAAACTCATGCAGGCCTCATGGCTCAGGCCTGTGGATCGGGCCATGATTCTCTTCATGCGACTGAGAATGTACGTCCGATACGGACAGTTCGGGCCTGCGTATATGATGGATGCAGTCCATGGCGATCCGAAAGACAATCGTCTGAGCCTATGGAGCGAAAAACAGTTCGAAGACGCTTTCCTGCGAGATTTCGATGTATTTCTCTCCTATCGCAAAGCCCTTCTGCAAGCCCGAACGGAGGACTTCCGTCCTTTGTTCGAATCTCAACCGAAAAAATGTGCTGCACCTCCCCGTTCACTCTATCAGAGCTGTATATCCGTCCTTGCCCTTGCTGTCGGTAGCAGTTCGGAAGCTGACGGAAAGATTTCGCATGCTCTCGAACAGGAACTGCGCCAAGCAGCATCTTATCTCTCTGACAGACGTGAGCGGCTCGAGATGGAGACCGACCGATTGGACTACGAGAAGCGGTGTCGAAAGCTCGATGATGCAGCTTCCTATCGTCGGATGGACGAGCTGATAGCAGCGTATTCGGATCTCCCCGATGTAATCGGTATGGTGGACAGACGAGTGAATGCCTATTGTGATGAAGAGGAGTATGTATCTGCTCTCGACCTGTGCAACAGCTATCTGTCCAAGTATCCGGAGGCTCCTCGTATCAACCTGCTGAAAAGCTCTCGGGCTTCGCGCATTTTGGCTTCTTTCGTCAAGTGCGACTATCCCCTCCGGCTGCATACACGCCTCCCGAAGAGCATGCGGATCGCATCGCGCAATGTCGGCTCCGTCCTCATCAGTCTGTACTGGCTGGATATGAATGGCTCGCAAGCTGCTGATATAAGGCAGGAGGATCTGCACTTGTATGCGAAAGGAACACCTTTTTGGACGGAAAGCATCCGGACACAGGGCCGGGCCGATATGAAAATGGATTCGATCCGCTGTACACTTCCGGATCTGCCCAAGGGGGTCTATCTGGTGAAAGCCTCGGCAGAGCAGTGTGTACTCGAAAAGACCAAGCCGGTGCCCCAATACAGTCTGCTCCATGTATCGGATCTCTTCTTCCTCGCTCAGCAGGCCATGCCGGGTGTGCAGGTACTCGATGCGCTGACGGGCAAGCCCGTGGAAGGCGCATCGGTGGATGCTTCCATGCGTTATTCTATAGACCGATCGGTTCATACCCTTTCTCCTACGGATCGGTATGGTCGGATCGATCTGCCGAAAAGCTACAATCGCTTCTTCCCCTATACCGACGGTGACCGCTCGTATCCCGTTGTTTCTGCCTATACCTACAAACAGGATCAGGTGGATCTTTCCAAGAAGAATGAGCGCAAGTATATCGTCTCCACGGATCGCGCCATCTATCGTCCCGGGCAGAAAGTCCATTTCTTCGGCCAGTGCGACCGGATAGGTTATGCCGTGGAGGACGCACGCGCCATCGGTGGATCGGAAGTTGAAGTCGTGCTGGAAGATGCTAACTCCAAGGAGATCGGTCGGCTGCTATGCCAGGCAGATGAGATGGGACGTTTCTCCGGTAGCTTCGACCTCCCGACAGGGATCTTGAATGGCCTGTTCGGACTACGAGTGGGAGGGGATACATATCCCTTTAGTGTGGAAGAGTACAAGCGGCCTACATTCGAAGTCGGCCTCCGGAGTCCCGACGCTGCATATGCTATGGGCGACACCCTCCGCATACGAGGCGAAGCCAAGACCTTTACCGGAATCGGTATGCGAGGAGCTACGGTGAACTATCGGCTGAGCCTGACCCCCTATACGCGTCGGTGGTGGGGTAGACCTGTGGCCGATAGGGTCGTACAGACCGGTGAGGCAGTGGTAGATGAATCGGGGTACTTCGTCATACCTGTTTCGCTGTCTCGGCCGGAAGGACGGGAAGACTATTCCTACTGCCTCTACACGCTATCGGCGGATGTGACCGCCCCCGGTGGCGAGACGCAGGCCGCCGTACTCCGAATACCCGTGGGAAAAGAACCCAAGAGGGTGGACGTCGAAGTGGGTAAATACATTCGTGCCAACGAAGACAACTGGCTTGCCACCTCTCTGCCGGATCTGACATTCTCCCTTACCAATACTTCCGGACAGACGGTGGAGGGATCCATCGCCTACTTCCTGTGCGATGCCGACAATGAACGTATCGGTCGGCTTTATACCGCAGCTTCAGGTGTGGTGACGCCTGCTCCGGCCGAATGGGGCAAGTTGCCTTCGGGACAGTACCGATTGCGTTTTGGCGAGAGTGGCGGAGAGGATTCCGACTTTGTTACGAAGGACGTTTATCTCTTCCGTCCGAAAGATCGTCAGTTGTCGAATCCCTCCCAAGGCCTTTGGACATATGTGGCGGAGGAGAAATACGACAGTCACCGCCCTGCCCGCATCCTGGTCGGTGCTACTCCCAAGGATGCGGATGCTCAGGAGTTGTATCTGTTCTACGACCTGACTCAGGCAGGCCGATTCATCGAAAGGAAGATGATCGCTTGCCGGCCGGGTGAGATCGTCGAGATAGTGCCGATGCTTCCGGCAGCTCCGTTGCCGGAGAGTATGAATGTTTCTCTCTATTATGTATATGGAGGGAGGCTGTATAGTCGAAGCATAGATCTGGAACGCAGACTGCCCAAGCGAGAGATAAAGATGTCGTGGAGTACTTTCCGCGACAAGCTCCGACCTGGTGAGAAAGAGACATGGAAGCTCCGTCTCGCCGATGCGGAGGGCAAACCGCTCTCTCATACCATGATGGCTGCTTGGATGTACGATGCTGCTCTTGATAAGATCGTGCACAGTTCTGTTTTCTCCTCCCGATTCTTCTCTTTTGCCGACTCTCCGGCTTCTTTGGTTAGGTTGTCTTTCCCGAATAGCGGGTATCGAGTGTCGGGGTTTGTGGAGGATTCTTACGTGCAAGTCGGGTTCAAACACCCTGTTTTCAAAACTCCCCAACTCTGCCTCTGGTCTGCTACCGGTTATAGATATGTGTCTTCGGATTATTATTATGATGGACCGATGATATTTGTGGGATATGGAGTTCCGGAAGCCAAATCGGTCGATGCTTTCCCGATGGAGGAGAAAGCTGCTCGGGCAGATGCGGTAAATGAAGCAGAACCCGAATCGAAGGAATCCGGGATTCAAGAATCCTCCGTGCGTACCAATTTCGCTGAGACTGCATTCTTTGAGCCGGCATTGCTGACCGATGAACGGGGCGAAGTTTCTTGGTCTTTCACTCTGCCCGAGACACTGACGCGCTGGCACCTGCTCCTCTTTGCACATACGAAGGATATGCGGTTGGGCATGAAAGACGAAAGCGTGGAGGTGCGGAAAGACTTTATGCTTACACCCAATTTGCCACGATTCCTGAGAATGGGTGACAAGGGTACGGCTTCGGCTTCGATTCGGAACGGGAGCGAGACGATGCAGCAGGGCTTCGTCCGTATGGAACTGTTCGACCCTGCTACCGACAAGCTATTGGGCGGCGAGAGGCTTCCGTTCTCGGTGGAAGCCGGTGGTACGGTTACGGTGTCGTTTCCGCTCGATCCTGTCTCCGGATATGATGCTCTGGGTGTACGTTTGTTAGCCGAAAGCCATGACTTCAGCGATGGAGAGCAACACTCGATCGTGCAACTGCCGGCTACGGAGCGAGTGGTGGAGACCATACCGTTGATTCTCTACGGCGGACAGTCCCAAACGGTGGATCTGGATAGTCTATTTCCCCATCGCAGCGGCAGACCGGCTATGGGTACAATGGCACTTCAGGTGGTGAGCAATCCGCTTTGGGTGGCCGTACAGGCCTTGCCCGTGATGACTGATGTACACGAGGAAGATGCCGTTTCGGTGGCTTCGGCTCTTTATGCCAATAGTATTGCTGCTGCCCTTGTTTCGGGTCGCTTGCTGCATACTCCTGCTTTGGGTGAGAGTTTGCGGCACTACTTGGCGCAGCCCTTGGATACACTCGCTTTACAAAAATCGCCCTTGTCCTCGGACGAATTGCCTTGGCGCGCGGAGATGCTGGCCGAACAGAACAATCGTCAGCGTTTGCAGGCTCTCGTGGCTTCGGATCGTCTGACATGGACGGAGCAGATGCTGACTGACAAACTGAAAAGGCTGCAAAAGTCTGACGGTTCGTGGGCTTGGCATCCTGAGATGTCTTCCAACGATTATCTGACGGACTATGTGATGACGATGCTGGTACGTCTCTCCGCTCTTACCGCTGCACCGGAGCATAAGGAGTTTCAGGCGGTGAAGCGTATGGGGTGGAATGCTCTCGATGATGCTGCCTCACGACTGATGGATAGAATGAAGGAATACGAAAAGAAAACCAAGAGTAAGTACAAAATACTGCCGGAACGAGCACTCAACTATCTCTATCTGCTTACGATCGACAGTCGCAACCCAAGCTCTCGTGGCCATGCTGCCCGCATGTATTTCCTCGATATTCTCGGCCGATCCCTTCCGCATATTTCCATTTTGGATATGCCGCGAGCTGCCATCGTACTCCACGGTGTAGGGCGTAAGGCACTGGCCGATGATTTCCTCCGTTCTATCCGTGAGCATATCATCCGCACACCGGATCAGGGTGCGCACTTTGCGCTGCCTTCAGGCGGATATTATTGGTGCGACCGTCGCTATGGTATGCAGACGGAAGCGATCGAGGCCTTCGCTCGTATCGGTACGTCTCAGGACAGCTCTCATATCGAAGGCTTGCAGATGTGGCTCCTCAATCAGAAAAGAACTCAGCTTTGGCCGAGTCTGCCGGCTTCTTCCGATGCGATATATGCTCTCTTGTTAGGTGCAGGAAAAGATCGAATGGTAGAAGCCACTGTGTCTGTCCGGGCTCCTGTACCTGCCTTGTCAGGTACATTTGCCGGTGCAGGCGAAAGTCGGATCGTTACGGTGGAAGATCTTCCGCAAGGCAAACTAAGTGCAGAGCTTGCTCGTTCCGGAAAAGGATTTGCTTGGGCTTCCTTCTTGGCGGAATACGATGCGCCGGCGGCGGATCTCGTAGCTACGGGTAATGGCTTGTCGGTAGAGAAGCATCTTTTCTCCGAGCAGGTGATAGATGGCAAGCTAACGCTCGTACCTCTCCGAGAGGGCGATCGGCTGGAAGTCGGTAAACGGCTCGTGACGCAACTGACCATTACGCTCGATCGCGATATGGACTTCATTGTCCTGACGGACAAGCGAACGGCTGCGGTGGAACCTATCGGCCAACTTTCGGGTTATGATTATGCAGCCGGAACGTTCTACTACAGAGAAATAAAGGATAGCAGTACGCGTTTCTATTTCGATCGTCTGGTAAGAGGATCCTACAAGCTCCAATACTCCACCGTTGTGGTTCGTTCGGGAGCTTATGCCTCAGGTATCGCTACCGTGAGCAGTGCCTATGCACCGGAGTTTACCGGTCATACCGATGGCGGCAGACAGCTGCAAACAGTTCCGGTCGCAAATACTCAA","6.40","-11.24","214286","MMNIRIIFSLFLALTIGLTAMNAQNPYATLEKELEQYRQERRPRKVAETLKKIRVMAESRRDVPMLLHSMFLYDDPENDINDYPEEPLMNDLDKLMQASWLRPVDRAMILFMRLRMYVRYGQFGPAYMMDAVHGDPKDNRLSLWSEKQFEDAFLRDFDVFLSYRKALLQARTEDFRPLFESQPKKCAAPPRSLYQSCISVLALAVGSSSEADGKISHALEQELRQAASYLSDRRERLEMETDRLDYEKRCRKLDDAASYRRMDELIAAYSDLPDVIGMVDRRVNAYCDEEEYVSALDLCNSYLSKYPEAPRINLLKSSRASRILASFVKCDYPLRLHTRLPKSMRIASRNVGSVLISLYWLDMNGSQAADIRQEDLHLYAKGTPFWTESIRTQGRADMKMDSIRCTLPDLPKGVYLVKASAEQCVLEKTKPVPQYSLLHVSDLFFLAQQAMPGVQVLDALTGKPVEGASVDASMRYSIDRSVHTLSPTDRYGRIDLPKSYNRFFPYTDGDRSYPVVSAYTYKQDQVDLSKKNERKYIVSTDRAIYRPGQKVHFFGQCDRIGYAVEDARAIGGSEVEVVLEDANSKEIGRLLCQADEMGRFSGSFDLPTGILNGLFGLRVGGDTYPFSVEEYKRPTFEVGLRSPDAAYAMGDTLRIRGEAKTFTGIGMRGATVNYRLSLTPYTRRWWGRPVADRVVQTGEAVVDESGYFVIPVSLSRPEGREDYSYCLYTLSADVTAPGGETQAAVLRIPVGKEPKRVDVEVGKYIRANEDNWLATSLPDLTFSLTNTSGQTVEGSIAYFLCDADNERIGRLYTAASGVVTPAPAEWGKLPSGQYRLRFGESGGEDSDFVTKDVYLFRPKDRQLSNPSQGLWTYVAEEKYDSHRPARILVGATPKDADAQELYLFYDLTQAGRFIERKMIACRPGEIVEIVPMLPAAPLPESMNVSLYYVYGGRLYSRSIDLERRLPKREIKMSWSTFRDKLRPGEKETWKLRLADAEGKPLSHTMMAAWMYDAALDKIVHSSVFSSRFFSFADSPASLVRLSFPNSGYRVSGFVEDSYVQVGFKHPVFKTPQLCLWSATGYRYVSSDYYYDGPMIFVGYGVPEAKSVDAFPMEEKAARADAVNEAEPESKESGIQESSVRTNFAETAFFEPALLTDERGEVSWSFTLPETLTRWHLLLFAHTKDMRLGMKDESVEVRKDFMLTPNLPRFLRMGDKGTASASIRNGSETMQQGFVRMELFDPATDKLLGGERLPFSVEAGGTVTVSFPLDPVSGYDALGVRLLAESHDFSDGEQHSIVQLPATERVVETIPLILYGGQSQTVDLDSLFPHRSGRPAMGTMALQVVSNPLWVAVQALPVMTDVHEEDAVSVASALYANSIAAALVSGRLLHTPALGESLRHYLAQPLDTLALQKSPLSSDELPWRAEMLAEQNNRQRLQALVASDRLTWTEQMLTDKLKRLQKSDGSWAWHPEMSSNDYLTDYVMTMLVRLSALTAAPEHKEFQAVKRMGWNALDDAASRLMDRMKEYEKKTKSKYKILPERALNYLYLLTIDSRNPSSRGHAARMYFLDILGRSLPHISILDMPRAAIVLHGVGRKALADDFLRSIREHIIRTPDQGAHFALPSGGYYWCDRRYGMQTEAIEAFARIGTSQDSSHIEGLQMWLLNQKRTQLWPSLPASSDAIYALLLGAGKDRMVEATVSVRAPVPALSGTFAGAGESRIVTVEDLPQGKLSAELARSGKGFAWASFLAEYDAPAADLVATGNGLSVEKHLFSEQVIDGKLTLVPLREGDRLEVGKRLVTQLTITLDRDMDFIVLTDKRTAAVEPIGQLSGYDYAAGTFYYREIKDSSTRFYFDRLVRGSYKLQYSTVVVRSGAYASGIATVSSAYAPEFTGHTDGGRQLQTVPVANTQ","2310523 2316246","TIGR ID: PG2204","conserved hypothetical protein","Cytoplasm, Outer membrane","This sequence corresponds to gi:34398085 in Genbank.Its nearest neighbor in the NR database is gi:29349455 from Bacteroides thetaiotaomicron VPI-5482.","
InterPro
IPR002890
Domain
Alpha-2-macroglobulin, N-terminal
PF01835\"[437-698]TA2M_N
InterPro
IPR008930
Domain
Terpenoid cylases/protein prenyltransferase alpha-alpha toroid
SSF48239\"[1413-1507]TTerp_cyc_toroid
noIPR
unintegrated
unintegrated
PTHR11412\"[1104-1237]TPTHR11412


","No hit to the COGs database.","***** IPB001599 (Alpha-2-macroglobulin family) with a combined E-value of 1.2e-11. IPB001599A 536-564 IPB001599B 626-638 IPB001599D 1140-1149 IPB001599E 1167-1187 IPB001599F 1196-1225 IPB001599H 1475-1505","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Mon Jan 5 09:55:08 2004","Thu Mar 10 08:20:19 2005","Tue Feb 13 14:23:13 MST 2001","Fri Mar 9 14:23:20 MST 2001","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 10 08:20:19 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Thu Apr 5 18:58:17 MDT 2001","34541767","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Thu Mar 10 08:20:19 2005","","1","","29","PG2204" "PG1928","2316264","2317205","942","ATGAACCAACAACCAATCAAAATCGCCGTATTCGGACTCGGTGGAGTAGGTGGCTACTACGGAGCCATGCTTGCTCTCCGCGCAGCTGCGACGGATGGCCTCCTCGAAGTTTCTTGGATAGCGCGCGGAGCACATTTGGAAGCCATCCGCGCGGCAGGAGGTCTACGAGTGGTCACTCCCTCACGAGATTTCCTTGCTCGTCCTACCTGTGTCACGGATAATCCTGCCGAAGTCGGCACAGTCGATTATATCCTCTTTTGTACCAAGGATTATGACATGGAGAGGGGAGTAGCAGAAATTCGTCCGATGATCGGGCAGAACACGAAGATCCTGCCCTTGCTCAACGGTGCAGACATAGCGGAACGCATGCGTACCTATCTGCCCGATACGGTCGTATGGAAAGGATGTGTCTATATTTCTGCTCGCAAGAGTGCCCCCGGCTTAATCACGCTGGAGGCTGATCGCGAACTTTTCTATTTCGGTTCGGGACTTCCCGAGCAGACGGATGATGAGGTGCGCCTTGCCGAACTGCTTACTGCTGCGGGTATTCGTGCATATAATCCGACCGATATCGATTGGTACATTATGAAGAAATTCATGATGATCTCCGTAACGGCTACCGCTACGGCCTACTTCGACAAACCCATCGGCTCGATTTTGACCGAACACGAACCCGAGCTGCTGTCTTTATTGGAAGAGGTGGCCGAGCTTTTCCGCGCCAAATACGGGCAAGTCCCCGATGATGTAGTCCAACAGCTACTGGACAAACAGCGGAAGATGCCTCCCGAAAGTACTTCTTCTATGCACAGCGATTTCTTGCAGGGCGGATCCACGGAAGTGGAGACGCTGACCGGCTATGTCGTGCGTGAGGCCGAGGCTCTTCGTGTGGATCTGCCGATGTATAAGCGGATGTACAGGGAGTTGGTAAGCCGGACCGCAAAC","4.90","-8.40","34788","MNQQPIKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIARGAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEVGTVDYILFCTKDYDMERGVAEIRPMIGQNTKILPLLNGADIAERMRTYLPDTVVWKGCVYISARKSAPGLITLEADRELFYFGSGLPEQTDDEVRLAELLTAAGIRAYNPTDIDWYIMKKFMMISVTATATAYFDKPIGSILTEHEPELLSLLEEVAELFRAKYGQVPDDVVQQLLDKQRKMPPESTSSMHSDFLQGGSTEVETLTGYVVREAEALRVDLPMYKRMYRELVSRTAN","2316170 2317204","TIGR ID: PG2205","possible oxidoreductase (ketopantoate reductase)","Cytoplasm","Several significant hits in gapped BLAST including: residues6-308 are 23% similar to gi|10174381|dbj|BAB05482 thiamine biosynthesis of B.halodurans, residues 6-299 are 30% similar to S. coelicolor putative oxidoreductase, gi|6002357|emb|CAB56722.1| (AL121600).","
InterPro
IPR003710
Family
Ketopantoate reductase ApbA/PanE
TIGR00745\"[7-314]TapbA_panE
InterPro
IPR008927
Domain
6-phosphogluconate dehydrogenase, C-terminal-like
SSF48179\"[190-314]T6DGDH_C_like
InterPro
IPR013328
Domain
Dehydrogenase, multihelical
G3DSA:1.10.1040.10\"[190-308]TOpine_DH
InterPro
IPR013332
Domain
Ketopantoate reductase ApbA/PanE, N-terminal
PF02558\"[8-165]TApbA
InterPro
IPR013752
Domain
Ketopantoate reductase ApbA/PanE, C-terminal
PF08546\"[190-312]TApbA_C
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.720\"[6-188]TG3DSA:3.40.50.720
PTHR21708\"[7-311]TPTHR21708
PTHR21708:SF21\"[7-311]TPTHR21708:SF21
SSF51735\"[6-201]TSSF51735


","BeTs to 6 clades of COG1893COG name: Ketopantoate reductase PanE/A330 showpbAFunctional Class: HThe phylogenetic pattern of COG1893 is a--kyq--eBr----------Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 82-300 are 23% similar to a (OXIDOREDUCTASE 2-DEHYDROPANTOATE) protein domain (PD007657) which is seen in O31717_BACSU.","","Thu Jun 14 13:13:57 MDT 2001","","Thu Jun 14 13:13:57 MDT 2001","Thu Jun 14 13:13:57 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:13:57 MDT 2001","Thu Jun 14 13:13:57 MDT 2001","","","Fri Jun 15 11:29:17 MDT 2001","Thu Jun 21 08:32:46 MDT 2001","Thu Apr 5 16:46:08 MDT 2001","","Thu Jun 21 08:29:53 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Apr 5 16:46:08 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 58 to 313 (E-value = 1e-14) place PG1928 in the ApbA family which is described as Ketopantoate reductase PanE/ApbA (PF02558)","Thu Jun 21 08:29:53 MDT 2001","34541768","","","","","","1","","29","PG2205" "PG1929","2318959","2317346","1614","ATGATTACAGTCAATGACCTGAGTGTCCAATTCGGCAAGCGAATACTTTTCCAAGACGTAAACCTCACTTTCACTCCCGGCAACTGCTATGGTATCATCGGTGCCAACGGTGCAGGCAAGTCCACCATGCTGCGCGTGATCAGCAAGCAACTCGATCCTACACGCGGGACGGTAACCTTAGGCCCGGGTGAGCGCCTTTCGGTGCTGAGCCAGGATCACTTTGCTTTCGATGAGAATACCGTGATGGATACCGTGCTGATGGGGCACTCCGTCCTCTGGGCGATCATGGAGGAGAAGAATGCGCTCTACGCCAAACCGGACTTCAGCGACGAAGACGGTACACGGGTAGCAGAGCTGGAGGACAAATTCGCCGAAATGGAAGGCTGGAATGCCGAGAGCGATGCAGCCATGTTGCTGAGCGGACTTGGCATCAAAGAGGATCTGCACTATATGCTGATGAAGGATCTGAGCGGAAAGCAAAAGGTGCGTGTGTTACTGGCGCGCGCCCTATACGGTAAGCCTGACAACCTCTTGCTCGACGAGCCAACGAACGACCTCGACCTCGAGACCGTTTCATGGTTGGAAAACTATCTGAGCAACTTCGAAAACACCGTGCTCGTCGTAAGCCACGACCGCCACTTCCTCGATTCGGTCTGTACCCATACGGTGGACATCGACTTCGGCAAGGTACAACAGTTCAGCGGCAACTACAGCTTCTGGTACGAATCCAGCCAGCTCGCTCTGCGCCAGCAACAGCAGCAGAACAAGAAGGCCGAAGAGAAGCGGAAGGAGTTGGAAGAGTTTATCCGCCGCTTCAGTGCGAACGTAGCTAAGAGTAAGCAAACGACGAGTCGCAAGAAGATGCTTGAGAAGCTCAATATCGAAGAGATTACTCCCTCTTCCCGTCGCTATCCGGGTATTCTCTTCACACCCGGTCGCGAACCCGGCAATAAGATTCTGGAAGTAAAGGGGCTGACCAAAAGTATCGAAGGGCAACTTCTTTTCCGTGATCTGAACTTCAATGTCGAAAAGGACGACAAGATTGTCTTTATCAGCCGAGATCCTCGTGCGATGACCGCCCTATTCAGTATTATCAACGGAGAGATGACACCCGATGAAGGTACATACGAATGGGGGCAAACCATTACCACGGCTTATCTGCCACTGGACAATTCGGGCTATTTCAATACGGATCTGAATCTCGTGGAGTGGTTGTCTCAGTTTGCCAAGGATACGAACGAAGTTTTTCTCAAAGGTTTCCTCGGCCGTATGCTGTTCAGCGGAGAGGAGATTCTCAAAAAGGCATCCGTCCTCTCCGGAGGGGAGAAGATGCGTTGTATGATCTCTAAGATGATGATGCTGGATGCCAATACACTCGTTTTGGACACGCCGACCAACCACCTCGACCTCGAGTCCATTCAGGCATTCAACAATACACTCAAGACTTATCGTGGCAATGTCCTCTTCGCCAGCCATGACCATGAGTTTATCCAAACAGTGGCCAACCGTATCATCGAACTGACACCGAATGGGATCATAGACAAGATCATGGACTACGATGACTACATCACCGACCCGATCGTAGCAGAGATGCGCCAAAAGCTTTACGGCCAA","4.90","-16.91","61058","MITVNDLSVQFGKRILFQDVNLTFTPGNCYGIIGANGAGKSTMLRVISKQLDPTRGTVTLGPGERLSVLSQDHFAFDENTVMDTVLMGHSVLWAIMEEKNALYAKPDFSDEDGTRVAELEDKFAEMEGWNAESDAAMLLSGLGIKEDLHYMLMKDLSGKQKVRVLLARALYGKPDNLLLDEPTNDLDLETVSWLENYLSNFENTVLVVSHDRHFLDSVCTHTVDIDFGKVQQFSGNYSFWYESSQLALRQQQQQNKKAEEKRKELEEFIRRFSANVAKSKQTTSRKKMLEKLNIEEITPSSRRYPGILFTPGREPGNKILEVKGLTKSIEGQLLFRDLNFNVEKDDKIVFISRDPRAMTALFSIINGEMTPDEGTYEWGQTITTAYLPLDNSGYFNTDLNLVEWLSQFAKDTNEVFLKGFLGRMLFSGEEILKKASVLSGGEKMRCMISKMMMLDANTLVLDTPTNHLDLESIQAFNNTLKTYRGNVLFASHDHEFIQTVANRIIELTPNGIIDKIMDYDDYITDPIVAEMRQKLYGQ","2318958 2317345","Transport ATPases in the bacterial plasma membrane belong to one of the largest protein families known, the ABC transporter superfamily. Members contain a conserved ATP-binding cassette. The use the energy relased through ATP hydrolysis to transport numerous substrates. See ABC Transporters Analysis.TIGR ID: PG2206","ABC transporter protein,NBD-NBD fusion protein","Cytoplasm, Inner membrane","Numerous hits with gapped BLAST to ABC transporters; e.g. residues 1-511 are 58% similar to ABC transporter (AF012285) of Bacillussubtilis, residues 1-537 are 51% similar to ABC transporter (AE001174) of Borrelia burgdorferi, residues 1-537 are 48% similar to ABC transporter (AE001254) of Treponema pallidum, residues 2-505 are 33% similar to ABC transporter (AE001308) of Chlamydia trachomatis.This sequence is similar to BT1242.","
InterPro
IPR003439
Domain
ABC transporter related
PD000006\"[156-198]T\"[438-480]TABC_transporter
PF00005\"[27-228]T\"[433-511]TABC_tran
PS50893\"[2-252]T\"[320-535]TABC_TRANSPORTER_2
InterPro
IPR003593
Domain
AAA+ ATPase, core
SM00382\"[26-226]TAAA
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[1-284]T\"[316-513]TG3DSA:3.40.50.300
PTHR19211\"[126-523]TPTHR19211
PTHR19211:SF11\"[126-523]TPTHR19211:SF11
SSF52540\"[4-238]T\"[322-521]TSSF52540


","BeTs to 10 clades of COG0488COG name: ATPase components of ABC transporters with duplicated ATPase domainsFunctional Class: RThe phylogenetic pattern of COG0488 is ----Y--CEBRHuj--olinxNumber of proteins in this genome belonging to this COG is 3","***** IPB001617 (ABC transporters family) with a combined E-value of 7.6e-09. IPB001617A 32-47 IPB001617B 439-450","Residues 331-437 are 53% similar to a (ATP-BINDING PROTEIN ABC TRANSPORTER YKPA) protein domain (PD030338) which is seen in O31716_BACSU.Residues 268-330 are 63% similar to a (PROTEIN ATP-BINDING TRANSPORTER ABC) protein domain (PD004492) which is seen in O31716_BACSU.Residues 71-156 are 60% similar to a (ATP-BINDING PROTEIN ABC TRANSPORTER) protein domain (PD015427) which is seen in O31716_BACSU.Residues 201-241 are 75% similar to a (PROTEIN ATP-BINDING TRANSPORTER ABC TRANSPORT REPEAT) protein domain (PD000796) which is seen in O51684_BORBU.Residues 413-511 are 28% similar to a (ATP-BINDING PROTEIN NUCLEOTIDE BINDING) protein domain (PD068705) which is seen in EXPZ_BACSU.Residues 18-69 are 50% similar to a (ATP-BINDING TRANSPORT PROTEIN TRANSPORTER ABC) protein domain (PD000005) which is seen in O51684_BORBU.Residues 438-480 are 62% similar to a (ATP-BINDING TRANSPORT PROTEIN TRANSPORTER ABC) protein domain (PD000006) which is seen in O83810_TREPA.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Thu Dec 4 12:08:00 2003","Fri Apr 7 09:48:29 MDT 2000","Thu Dec 4 12:08:00 2003","Tue Jun 5 15:29:50 MDT 2001","Tue Jun 5 15:29:50 MDT 2001","Tue Jun 5 15:29:50 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1929 is similar to many ABC transporter proteins (in order of decreasing similarity): PG1923, PG1084, PG1048, PG1533, PG0921, , PG1497, PG0254, PG1451, PG1477, PG0903, PG1049, PG0844, and PG0618. PG1929 is also weakly similar to PG1917 cell-division ATP-binding protein ftsE and PG0584 ferric enterobactin transport protein/iron(III) dicitrate transporter. Residues 1-523 are 31% similar to PG1923.","Tue Jun 5 15:29:50 MDT 2001","Tue Jun 5 15:29:50 MDT 2001","-39% similar to PDB:2IW3 ELONGATION FACTOR 3 IN COMPLEX WITH ADP (E_value = 5.1E_21);-39% similar to PDB:2IWH STRUCTURE OF YEAST ELONGATION FACTOR 3 IN COMPLEX WITH ADPNP (E_value = 5.1E_21);-39% similar to PDB:2IX3 STRUCTURE OF YEAST ELONGATION FACTOR 3 (E_value = 5.1E_21);-47% similar to PDB:1B0U ATP-BINDING SUBUNIT OF THE HISTIDINE PERMEASE FROM SALMONELLA TYPHIMURIUM (E_value = 1.2E_14);-45% similar to PDB:1VPL Crystal structure of ABC transporter ATP-binding protein (TM0544) from Thermotoga maritima at 2.10 A resolution (E_value = 4.7E_11);","","","Residues 27 to 228 (E-value = 1.8e-41) place PG1929 in the ABC_tran family which is described as ABC transporter (PF00005)Residues 356 to 510 (E-value = 1.2e-08) place PG1929 in the ABC_tran family which is described as ABC transporter (PF00005)","Thu Dec 4 12:08:00 2003","34541769","","","Saurin W, Hofnung M, Dassa E. Getting in or out: early segregation between importers and exporters in the evolution of ATP-binding cassette (ABC) transporters. J Mol Evol 1999 Jan;48(1):22-41.","","Fri Apr 7 09:48:29 MDT 2000","1","","29","PG2206" "PG1931","2320254","2319238","1017","ATGGCTAACAAGATAAAAGTTCTTCTGACAGGAGCCGGCAGCACGCTGGGAAGAGAGATTTTGGCTCAACTCCTTACGATGCGCAAAGTCTTCGAGATTTCCGTTTTGGATATCAAGCGTGGGCATACGATGGCTTTCTTCGAAAAGTATAAGAAGGAGATTCATATTTTCTACGGGGACTGTTCCGTACAGGATAATACCGTCGAGGCCTGTAAGGGACAGGATTTTGTGATTCATTGCCAGAGCCTTGAGAAAGCCAATGCGGATAAGCGTCTTCGACTGGCAGAGGACGTCAACACGATGGGTACGCGCTACATCATCGAGAATCTGGAACGCTTCTCCCCGGGCGCCTACCTGCTCTACATTTCCACGGTAGGGGTATATGGCGACAGACTGAAAGCTCCTATGATCAGTGCGGACAATATGACCTGCCCCTCCATGGGCGACTACGATGCTCTGACCAAGTTGCAAGCCGAAAAGCTGGTACAGGAATCCAGCCTCGAATGGACGATCTACCGCCCGGGTATTATCCTCGGACACGATTCGTCCTTGCTGAACAGCTCTGTATTCTGTATGCCATTGGCCACACGCTTCGAGACCGTCCATATCCGCGATCTTGCCTCTGCCTGCGTGAAGGCATACGATCACAAAGCTTCTCTTTGGGGGCGGACATACAATGTGGGAGGGGGCGAGGCTTGTCGCATCGTTTACTCCGACTATATCCGCCGCCTGTTCAAGTTGCTCGGTCTCGGCTACCCGGAGTTTCCGGACAGGGCGTTTGCCACACGCAATCGCTTTGGAGGATACTTTGCCGATGGGGATGCATTGGAAGCCATCCTGCACTTCCGTCGCCATACGATAGAAGACTACTTCAAGGAGTTGGCAGCCCAACAGCCCATTCTGAAAAAGTTGGCCAATAAGATATTCGTCGGTGTACAGCGCAAGAGTCTGGAGGGGAAAAGTGCTCCGCTTCGGGCGATTAAAGAGAACGACAGAGCCAAAAAGAAGTACTACTTC","9.60","11.61","38407","MANKIKVLLTGAGSTLGREILAQLLTMRKVFEISVLDIKRGHTMAFFEKYKKEIHIFYGDCSVQDNTVEACKGQDFVIHCQSLEKANADKRLRLAEDVNTMGTRYIIENLERFSPGAYLLYISTVGVYGDRLKAPMISADNMTCPSMGDYDALTKLQAEKLVQESSLEWTIYRPGIILGHDSSLLNSSVFCMPLATRFETVHIRDLASACVKAYDHKASLWGRTYNVGGGEACRIVYSDYIRRLFKLLGLGYPEFPDRAFATRNRFGGYFADGDALEAILHFRRHTIEDYFKELAAQQPILKKLANKIFVGVQRKSLEGKSAPLRAIKENDRAKKKYYF","2320253 2319237 [Shadowed by 2509]","TIGR ID: PG2207","hypothetical protein","Cytoplasm","Resides 8-126 show very weak similarity to 3beta-hydroxy-Delta5-steroid dehydrogenase of several proteins.","
InterPro
IPR001509
Family
NAD-dependent epimerase/dehydratase
PF01370\"[7-228]TEpimerase
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.720\"[7-231]TG3DSA:3.40.50.720
PTHR10366\"[9-293]TPTHR10366
SSF51735\"[6-298]TSSF51735


","BeTs to 3 clades of COG0451COG name: Nucleoside-diphosphate-sugar epimerasesFunctional Class: M,GThe phylogenetic pattern of COG0451 is AMTKYQVCEBRHUJ--o----Number of proteins in this genome belonging to this COG is 5","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Feb 14 09:33:31 MST 2001","Fri May 18 18:23:35 MDT 2001","Wed Feb 14 09:33:31 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri May 18 18:23:35 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 4 to 331 (E-value = 7.3e-05) place PG1931 in the 3Beta_HSD family which is described as 3-beta hydroxysteroid dehydrogenase/isomerase family (PF01073)","Fri May 18 18:23:35 MDT 2001","34541770","","","","","","1","","29","PG2207" "PG1932","2320679","2320428","252","ATGTTAGGATCGATTTTAGGTTCCATTATTATCGGTGCATTAGCCGGTTTTATTGCAAGTAAGTTACGGAAGGGCCGATCGTTAGGCTTATTGCTCAACATTATTATCGGTTTGATCGGAGGTGTTTTAGGCGGCTTCGTGTTGAGTATTTTAGGCTTCTCGGACGGTGGCTCTTTCTTGGCAAGGCTTGCCACCTCCACGCTGGGTGCCATACTGCTGCTGGCTATAGCAGACTTCTTCGGCGGTAAACGC","12.10","4.97","8399","MLGSILGSIIIGALAGFIASKLRKGRSLGLLLNIIIGLIGGVLGGFVLSILGFSDGGSFLARLATSTLGAILLLAIADFFGGKR","2320678 2320427","TIGR ID: PG2208","conserved hypothetical protein","Inner membrane, Extracellular","This sequence corresponds to gi:34541771 in Genbank.Its nearest neighbor in the NR database is gi:29346846 from Bacteroides thetaiotaomicron VPI-5482.","
InterPro
IPR007114
Family
Major facilitator superfamily
PS50850\"[1-84]TMFS


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Mar 10 08:28:46 2005","Thu Mar 10 08:28:46 2005","Wed Feb 14 09:39:06 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","PG1932 is similar to PG1933, a hypothetical protein (possible tandem repeat). Residues 1-84 are 71% similar to PG1933.","Tue Jun 5 15:32:11 MDT 2001","Tue Jun 5 15:32:11 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Jun 5 15:32:11 MDT 2001","34541771","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Thu Mar 10 08:28:46 2005","","1","","29","PG2208" "PG1933","2321021","2320770","252","ATGGTAGGATCGGTATTGGGTTCGATTGTAATCGGTGCTTTGGCCGGTTATATAGCCGGCAAATTGCGGCGAGGGAAGTCATTGGGCTTGTTGCTCAATATTCTCATCGGTTTGGTGGGTGGTGTCCTGGGCGGATACCTTCTGAATTTGATAGGCATATATAATGGTGGATCTTTCTTGGCGAGGCTTGCTACGTCTACGCTGGGGGCCATCGTTCTACTGCTGCTGGCTGACCTCCTAAGCAAAAAGCGT","11.50","6.97","8488","MVGSVLGSIVIGALAGYIAGKLRRGKSLGLLLNILIGLVGGVLGGYLLNLIGIYNGGSFLARLATSTLGAIVLLLLADLLSKKR","2321020 2320769","TIGR ID: PG2209","hypothetical protein","Inner membrane, Extracellular","No significant hit found using gapped BLAST search of GenBank.","
InterPro
IPR007114
Family
Major facilitator superfamily
PS50850\"[1-84]TMFS
InterPro
IPR007341
Family
Transglycosylase-associated protein
PF04226\"[34-82]TTransgly_assoc


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Apr 11 17:16:51 MDT 2001","Wed Feb 14 09:41:42 MST 2001","Wed Feb 14 09:41:42 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","PG1933 is similar to PG1932, a hypothetical protein. Residues 1-84 are 71% similar to PG1932.","Tue Jun 5 15:34:55 MDT 2001","Thu Apr 5 15:19:18 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 34 to 82 (E-value = 3.3e-07) place PG1933 in the Transgly_assoc family which is described as Transglycosylase associated protein (PF04226)","Wed Apr 11 17:21:24 MDT 2001","34541772","","","","","","1","","29","PG2209" "PG1934","2323903","2321048","2856","ATGAAGCAGCAGGAAAGCGAGCATCCCACAAGTGGCGAAGCCATCATCATCAAAGGGGCACGCGTCAATAATCTGAAGAATATATCGCTGACTATACCGCGGGGCAAGCTGGTCGTGGTGACCGGACTATCCGGTTCGGGCAAGAGTTCTTTGGCTTTCGATACGCTCTATGCGGAAGGCCAGAGACGTTACGTGGAGAGCCTGTCTGCCTATGCGCGTCAGTTTCTGGGAAGGATGCGCAAGCCGGAGTGCGACTTGATCGCCGGTGTGCCTCCTGCCATTGCCATCGAGCAACGCGTAGTAAGCCGCAATCCGAGGAGTACCGTAGCCACATCGACCGAGATATACGAGTACCTGCGCCTGCTCTTTGCTCGCGTAGGCAGGACCATCTCTCCGACAAGCGGAGAGGAGGTGAAGAAACATACGGTGGCCGATCTGGTCGCTTACGTTGCCGATCGGCCCATCGGCTCCAAACTGTATCTTCTGGTAGGGCTGCAAGCCCCTCAAGGACGTAGTCTGCGTGAGCACTTGCAGATCCAACAGCAGCAGGGCTATACGCGCATTTTCGTTGCCGGGGAGATGAAGCGGATCGAGGACATTTTATCCGCCGAAACTGATTTCTCCGATACGGCCTCCTGCTTCCTGCTTATCGATCGGCTGGTGATTGCAGAGGACAAGGCGGACTATGAGTCGCGTCTTGCGGATTCGGCCGAGACAGCTTTTTTCGAAGGAAACGGGGCGTGCCTGCTGCGCATCGAAAGCCCGGAAGGAACGGTGGAGGAACGGATGTTCAGCAATGTGTTCGAAGCCGATGGGCGTACCTTTCAGGAGCCGAGTCCGGAGATGTTCAGCTTCAACAATCCTATCGGGGCATGCCCTACTTGCGAAGGTTTCGGGAAGGTAATGGGGATCGATGAGGATCTGGTGGTACCGAACAAGTCTCTCTCTGTCTATGAAGAATGTGTAGCTTGCTGGATAGGGGCCAAGTCGCAGATGTGGAAGGACTATTTCATCCAAAAGAGTGTGCCACTGGGTTTTCCCGTACACAAGCCCTACAAAGAGCTATCCGATATCGAACGCGATATGCTGTGGCGTGGTGTACCCACGGGAGAACCGGATTACCCGAATATCGGTATCGACGACTATTTCTCTATGCTGCAGAGGGATATGCACAAGATTCAGAACCGTGTCCGGCTGGCGCATTTTCGCGGCAAAGCCACCTGCCCCGATTGTCGTGGGATGCGACTCAAGCCGGATGCTCTGTGCGTGAGAATAGGCGGACGGAATATATCGGAGCTGACGGCTCTGACTGTAGAGGAGACGTCGGCATTTTTCGAGGGGCTACAGCTATCGGAAGACGATCTACATATAAGCAGACGGCTGCTGGAGGAGATAGGCAAGCGGCTACGCTTCCTGCTCGAAGTGGGGTTGGGGTATCTGACACTTGACCGCCTGTCCAATACGCTCTCGGGTGGAGAGAGCCAGCGCATCAGTCTGGCTACGCAGCTCGGCAGCAGCTTGGTGGGTTCGCTCTACGTGCTGGACGAGCCGAGTATCGGTCTGCATCAGCGAGATACGCATCGGCTTATCGGTGTTCTGAAGCGACTGCGCGATCTGGGCAATACCGTTGTAGTCGTCGAGCATGACGAGGAGACAATCCGGTCAGCTGATTATATCATCGACATAGGGCCGAAGGCCGGCCGCCAAGGCGGCGAAGTGGTCTATGCCGGCGAGTATGACCGCATAGACAAGGATACTCCGGGCTATACGGCGGCTTATCTGACGGGACGAGAGAAGATCGAACTGCCACGCCTGCGTCGTCCATGGAACTCATATATCGAAGTTCGGGAAGCCTCGAAGCACAATCTGAAAGGGGTGAATGTCCGATTCCCACTGCACGTGCTCACGGTGGTGACCGGTGTGAGCGGATCGGGAAAGAGTACCTTGGTGCGCGATCTTTTCTACGAAGGAGTAAAAAGGATTCTCGAAGGAGGCAGCACACAAGGGTTAGCCTGCGAGGGCATTGTCGGGGACATCAAGTCTGTCCGAGACATTCAGTACGTGGATCAGAACAATTTCGGTCGCAGCACCCGCTCCAACCCGGTCACGTACATAGGTGCTTACGATGATATTCGCAAGCTCTACAGTGCATTGCCACTGTCCAAACAGATGGGATACCAGCCCTATTTCTTCAGTTTCAATAAGGAAGGAGGCCGCTGCGAGGTCTGCAAAGGAGAGGGCAGTATCGTGGTGGAGATGCAGTTCATGGCCGATATAGTATTGGAGTGTGAAGAGTGTCATGGCAAACGTTTCCGCAAGGAGATTCTCGATGTGGAGTACTGCGGCGCGAATATTTACGACTTGCTGGAGATGACGGTCAATCAGGCCGTTGAATTTTTCACCGATCATCCGAAAGCCAGCTACACGGACAAGATCGTGGAGAAGCTCGAATGTCTTCGAGAGGTCGGACTCGGGTATCTCAAACTGGGACAGAGCAGCAGTACACTCTCCGGTGGGGAAAACCAACGCGTCAAGCTGGCTGCATATCTGGGACAAGCCAAACCCGCACCCACGCTTTTCATCTTCGACGAACCGACTACGGGCTTACATATCCATGATATTCGTACCTTGCTGCACGCACTGAGTGCTCTTATCGACAAAGGGCATTCGGTAGTGGTGGTAGAGCATAATATGGAGATAATCAAGAGTGCCGACTGTATCATCGACTTAGGCCCTGAGGGTGGAGGTGCCGGTGGTTATTTGGTCGCAACAGGTACGCCCGAAGAGGTGATGCGATGCGATGCCTCCTATACGGGAAAGTGGTTGAAAGAGATATTGGGAAACGAACAAAGAGGT","5.90","-13.20","105798","MKQQESEHPTSGEAIIIKGARVNNLKNISLTIPRGKLVVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLGRMRKPECDLIAGVPPAIAIEQRVVSRNPRSTVATSTEIYEYLRLLFARVGRTISPTSGEEVKKHTVADLVAYVADRPIGSKLYLLVGLQAPQGRSLREHLQIQQQQGYTRIFVAGEMKRIEDILSAETDFSDTASCFLLIDRLVIAEDKADYESRLADSAETAFFEGNGACLLRIESPEGTVEERMFSNVFEADGRTFQEPSPEMFSFNNPIGACPTCEGFGKVMGIDEDLVVPNKSLSVYEECVACWIGAKSQMWKDYFIQKSVPLGFPVHKPYKELSDIERDMLWRGVPTGEPDYPNIGIDDYFSMLQRDMHKIQNRVRLAHFRGKATCPDCRGMRLKPDALCVRIGGRNISELTALTVEETSAFFEGLQLSEDDLHISRRLLEEIGKRLRFLLEVGLGYLTLDRLSNTLSGGESQRISLATQLGSSLVGSLYVLDEPSIGLHQRDTHRLIGVLKRLRDLGNTVVVVEHDEETIRSADYIIDIGPKAGRQGGEVVYAGEYDRIDKDTPGYTAAYLTGREKIELPRLRRPWNSYIEVREASKHNLKGVNVRFPLHVLTVVTGVSGSGKSTLVRDLFYEGVKRILEGGSTQGLACEGIVGDIKSVRDIQYVDQNNFGRSTRSNPVTYIGAYDDIRKLYSALPLSKQMGYQPYFFSFNKEGGRCEVCKGEGSIVVEMQFMADIVLECEECHGKRFRKEILDVEYCGANIYDLLEMTVNQAVEFFTDHPKASYTDKIVEKLECLREVGLGYLKLGQSSSTLSGGENQRVKLAAYLGQAKPAPTLFIFDEPTTGLHIHDIRTLLHALSALIDKGHSVVVVEHNMEIIKSADCIIDLGPEGGGAGGYLVATGTPEEVMRCDASYTGKWLKEILGNEQRG","2323902 2321047","This repair enzyme catalyzes the excision of UV-damaged nucleotide segments. It consists of three subunits. It is believed to be cytoplasmically located. Other subunits are PG0346 (B), PG0923 (A) and PG1740 (C). TIGR ID: PG2210","excinuclease ABC subunit A","Cytoplasm","This sequence is similar to CT333 and to BT1739.Numerous significant hits in gapped BLAST to excinuclease ABC subunit A; e.g. residues 15-951 are 46% similar to AP001519 of Bacillus halodurans, residues 15-950 are 46% similar to AE000828 of Methanobacterium thermoautotrophicum, residues 13-950 are 47% similar to AF017113 of Bacillus subtilis.","
InterPro
IPR003439
Domain
ABC transporter related
PD000006\"[835-881]TABC_transporter
PF00005\"[819-914]TABC_tran
PS00211\"[489-503]TABC_TRANSPORTER_1
PS50893\"[600-943]TABC_TRANSPORTER_2
InterPro
IPR004602
Family
Excinuclease ABC, A subunit
TIGR00630\"[14-931]Tuvra
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.300\"[482-602]T\"[610-941]TG3DSA:3.40.50.300
PTHR19222\"[463-656]TPTHR19222
SSF52540\"[17-571]T\"[603-940]TSSF52540


","BeTs to 13 clades of COG0178COG name: Excinuclease ATPase subunitFunctional Class: LThe phylogenetic pattern of COG0178 is --t--qvcebrhujgpolinxNumber of proteins in this genome belonging to this COG is 2","***** IPB001617 (ABC transporters family) with a combined E-value of 1.8e-06. IPB001617A 638-653 IPB001617B 837-848 IPB001617B 490-501","Residues 709-835 are 48% similar to a (ATP-BINDING ABC SUBUNIT A EXCINUCLEASE EXCISION NUCLEASE) protein domain (PD001646) which is seen in O26543_METTH.Residues 280-366 are 41% similar to a (ABC SUBUNIT A EXCINUCLEASE ATP-BINDING EXCISION NUCLEASE) protein domain (PD003717) which is seen in UVRA_MICLU.Residues 135-272 are 28% similar to a (ATP-BINDING ABC SUBUNIT A) protein domain (PD003919) which is seen in O26543_METTH.Residues 836-881 are 63% similar to a (ATP-BINDING TRANSPORT PROTEIN TRANSPORTER ABC) protein domain (PD000006) which is seen in UVRA_MICLU.Residues 535-574 are 77% similar to a (ABC SUBUNIT A ATP-BINDING EXCINUCLEASE EXCISION NUCLEASE) protein domain (PD001721) which is seen in UVRA_SYNY3.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","Tue Mar 26 15:53:17 2002","Wed Mar 22 15:38:25 MST 2000","Mon Dec 8 16:01:52 2003","Tue Mar 26 15:53:17 2002","Wed Mar 28 14:20:10 MST 2001","Wed Mar 28 14:20:10 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","PG1934 is similar to PG0923, residues 13-943 are 42% similar to PG0923, excinuclease ABC subunit A.","Tue Jun 5 15:37:29 MDT 2001","Wed Mar 28 14:20:10 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 35 to 563 (E-value = 8.5e-08) place PG1934 in the ABC_tran family which is described as ABC transporter (PF00005)Residues 633 to 911 (E-value = 6.7e-17) place PG1934 in the ABC_tran family which is described as ABC transporter (PF00005)","Mon Dec 8 16:01:52 2003","34541773","","","","","","1","","29","PG2210" "PG1934.1","2324860","2324579","282","TTGAGAGAAGTCCTATACAGATCCGACATTTATGTTTTCGGACGGTATCCGATGAGTAGTTTTATCGGATATCCGGGGCTCTCCTCTTCTTCTTTTTGTACCCACATCAACTTTTTCTACGCGAGTTCTTGCACATCTACGGCTCGTGTTTTTCGGAAGAAGTGGCGCGAGATTTTTTTCGTTCTGGCGCGTAAAAATTTTACTTCTCGCGCCAAAAGCAAAATTTTCCCGCGCCACGTTTTCCGAGACATGAATAAAGAAATTTTCCGAACGCAAACAATC","","","11226","LREVLYRSDIYVFGRYPMSSFIGYPGLSSSSFCTHINFFYASSCTSTARVFRKKWREIFFVLARKNFTSRAKSKIFPRHVFRDMNKEIFRTQTI","","TIGR ID: PG2212","hypothetical protein","Cytoplasm","This sequence corresponds to gi:34398092 in Genbank.","
InterPro
IPR012456
Family
Protein of unknown function DUF1661
PF07877\"[62-90]TDUF1661
noIPR
unintegrated
unintegrated
tmhmm\"[21-41]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Thu Feb 15 10:44:38 MST 2001","Thu Mar 10 08:54:55 2005","Wed Feb 14 13:28:15 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","Residues 33-82 have 56% similarity to hypothetical protein PG0713.1.","Wed Feb 14 13:28:15 MST 2001","Thu Mar 10 08:54:55 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541774","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Thu Mar 10 08:54:55 2005","","1","","","PG2212" "PG1934.2","2325123","2324944","180","ATGTCACAACAAGATGAAATTATCTGCCACTGCAACGAAATTACACGTGGAGAGATTGAAAAAGCAATTAGAGAAAAAGGATTGAAGACCGTGGATGAAGTAGGCGAAGCTACAGACGCAGGGACTGTATGTGGTTCATGCCAAGACGAAATCCAAGCTATTTTAGACGAAATCAACGGT","0.00","0.00","6491","MSQQDEIICHCNEITRGEIEKAIREKGLKTVDEVGEATDAGTVCGSCQDEIQAILDEING","","TIGR ID: PG2213","possible nitrite reductase-related protein","Cytoplasm, Periplasm","Numerous hits using gapped BLAST to a small segment of the large subunit of nitrite reductase, nirB. Residues 3-55 are 47% similar to residues 410-461 of gi|2982926|gb|AAC06543.1 (AE000678) nitrite reductase (NAD(P)H) large subunit in Aquifexaeolicus. Residues 5-60 are 46% similar to residues 413-468 of gi|14248174|dbj|BAB58562.1| (AP003365) nitrite reductase in Staphylococcus aureus, while residues 5-60 are 42% similar to residues 414-469 of gi|1805402|dbj|BAA08964.1 (D50453) subunit of nitrite reductase in Bacillus subtilis.","
InterPro
IPR007419
Domain
BFD-like [2Fe-2S]-binding region
PF04324\"[6-59]TFer2_BFD


","BeTs to 4 clades of COG1251COG name: NAD(P)H:nitrate reductaseFunctional Class: CThe phylogenetic pattern of COG0593 is -----q--eBr----------Number of proteins in this genome belonging to this COG is 1","","","Thu Jul 5 17:55:41 MDT 2001","Thu Jul 5 17:55:41 MDT 2001","Thu Jul 5 17:55:41 MDT 2001","Thu Jul 5 17:55:41 MDT 2001","Thu Jul 5 17:56:03 MDT 2001","Thu Jul 5 17:55:41 MDT 2001","Thu Jul 5 17:55:41 MDT 2001","Thu Jul 5 17:56:03 MDT 2001","Thu Jul 5 17:56:03 MDT 2001","Thu Jul 5 17:55:41 MDT 2001","Thu Jul 5 17:55:41 MDT 2001","Thu Jul 5 18:12:47 MDT 2001","Thu Jul 5 18:12:47 MDT 2001","Thu Jul 5 17:59:57 MDT 2001","Thu Jul 5 17:55:41 MDT 2001","Thu Jul 5 17:55:41 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Thu Jul 5 17:59:57 MDT 2001","Thu Jul 5 17:55:41 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 6 to 59 (E-value = 2.2e-19) place PG1934.2 in the Fer2_BFD family which is described as BFD-like [2Fe-2S] binding domain (PF04324)","Thu Jul 5 17:55:41 MDT 2001","34541775","","","","","","1","Thu Jul 5 17:55:41 MDT 2001","","PG2213" "PG1935","2326668","2325397","1272","GTGGAGCATTTCTTACAATACGTATGGCAGCACCGCCTCTATAGCTCGTTAAGCTATGGGGCGGATGCTTTCTTTTTGGAGCCTGAGGTCATTGATCCGGGGATGCTCAATCGGGATAGTGGCCCCGATTTCTTCAACGCCAAGGTGAAAGTGGGCGATCTCCTCTGGGCCGGCAACGTAGAGATTCATTGCAGGGCTTCGGATTGGGTCCGTCACGGGCATCATCTCGATCCGGCTTATGACAATGTAGTACTCCATGTGGTAGAGACGGATGACCTCCCGATACGGCACCGAATCAGCGGTGAACCTGTCCCCGTTTGCGTTATGCATGTAGACGAACGGCTTAGGGCAAACGCCGACTTTATGCTCCGGACGTCCCTTTTGCCGGGTTGTAAGGACAGGCTCCATGAACTTGATAGCCTCGAAGTCCACGACTGGCTGGACACGCTCGTCGTAGAACGATTGGAGCGTAAGGCTGCCGAAGTGGATCGGCTCTATCTGTCTACGTCCATGGATTGGAATGCAACGGCCTATATCCTGTTAGCTCGTCATTTCGGATTCGGGCTGAACAACGATGCCCTCGAGCGGCTTGCTCGCAGCCTGCCCTTTGCCGCCATCGCCAAGCATCGGAGCAATCTCCTGCAAGTGGAAGCCCTCCTGCTCGGGCAGGCCGGTTTGTTGGCCGACCTTGAGGATGAATATGCCGAGAAGTTGGCTTCGGAATACGCTTTTTTGAGACATAAGTTCGACCTGCAGCCTCTTGATCCCTCTCTCTTTCGTCTGCATCGCGCCCGTCCTGCCTCTTTCGTACATCGTCGATTGGGACAGTTGGCCGCCATTCTGCATCGCTGCGAGTTCCTGTTTTCTTCTTTTGTGGAGACTGTGTCCGCTAAAGAACTGGCACAGAAGCTCAGCGTGGAGGCATCGTCTTACTGGGCTTCGCATTATCGCTTTGGGAAGCCCACCCCTGTTCCTTCCCGTAGTACGCTTGCCGCTATTTCGTCGGATGCCCTGCTGATCAATGTAGCAGCCCCACTTCGCTATGCTTGGTTGAGGGGGCAGAGCATGGAGGACTACCGCGAGCGGACAATAGACTTCCTGCGTGGCATCAAACCCGAAAACAACAAGCCGGTTCGTGCTTTCTCCCAGATCTGCCGACCTGCGGATGCTGCCGAAAGCCAAGCCCTCATTCAGCTCTATCGCGAATACTGCGAGCGACGCAAATGCTTCTTTTGTCGCTGGGGCTATCGCTTGCTGAGCTGCTGCAAAGGG","7.10","0.89","48582","VEHFLQYVWQHRLYSSLSYGADAFFLEPEVIDPGMLNRDSGPDFFNAKVKVGDLLWAGNVEIHCRASDWVRHGHHLDPAYDNVVLHVVETDDLPIRHRISGEPVPVCVMHVDERLRANADFMLRTSLLPGCKDRLHELDSLEVHDWLDTLVVERLERKAAEVDRLYLSTSMDWNATAYILLARHFGFGLNNDALERLARSLPFAAIAKHRSNLLQVEALLLGQAGLLADLEDEYAEKLASEYAFLRHKFDLQPLDPSLFRLHRARPASFVHRRLGQLAAILHRCEFLFSSFVETVSAKELAQKLSVEASSYWASHYRFGKPTPVPSRSTLAAISSDALLINVAAPLRYAWLRGQSMEDYRERTIDFLRGIKPENNKPVRAFSQICRPADAAESQALIQLYREYCERRKCFFCRWGYRLLSCCKG","2326667 2325396","TIGR ID: PG2214","hypothetical protein","Cytoplasm","No hit found using gapped BLAST search of GenBank. ","No hits reported.","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Feb 14 13:31:50 MST 2001","Wed Feb 14 13:31:50 MST 2001","Wed Feb 14 13:31:50 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541776","","","","","","1","","30","PG2214" "PG1936","2327788","2326706","1083","ATGGCTGTGAAAGACAATTATTGCGTCATTATGGGAGGGGGAATAGGAAGCCGCTTTTGGCCCTTCAGCCGTGAATCCCATCCCAAACAGTTCCTCGACTTCTTCGGCACCGGACGCTCCCTCCTGCAGATGACATATGACCGTTTCGCACGGTTTATCCCCCGGGAAAACATTCTGGTCGTTACCAATGAACTTTACGTGGACAAGGTGCGCGAACAGCTTCCTGAGATCGAACCGGATCAAATCCTGCGCGAACCGACCCGTCGCAATACGGCACCCTGCATCGCATATGCCAGCTATCACATTTACGCGCGCAATCCCAAAGCCAACATAATCGTAGCTCCTTCGGATCATCTGATCCTGCGCGAAGACGAATTCGTGCGTGCTGCATCGGAAGCGTTGGAGTTCGTAGCCGATCACGAGCATCTCGTGACGCTCGGCATCCGTCCATCCCGTCCGGAGACGGGCTATGGATATATCCAAATGGCTGAAGAAAAGACCGGTGATTTTATCCGTGTGAAAACCTTTACGGAGAAGCCCAATGCCGAGATGGCAAGCATCTTCCTCGCCAGTGGAGAATTCCTGTGGAATAGTGGAATGTTCGTATGGAACGTGGAGAGCATCCTTGCCGCATTCCGCAAGCATCTGCCGGAAGTAACCTCTTCTCTCGAAAATGGCTTGGCACACTTCAATACACCTGAAGAGCGGCGTTTCATCGATCAGGCTTTCCCCTACTGTCCGAGCATTTCCATCGACTTTGGCGTGATGGAGAAGGCGGACAATGTCTTGGTCATGCCCGTGGACTTCGGCTGGGCAGACCTCGGCACATGGGGATCTCTCTATGAGCTGGCACAGAAAGACGATGCCGGAAACGCATCGCTCAAGACGCGGACGCTCTTCTACGAGGCCGAACGTAACATCGTTACCACGGACAATCCGCAGAAGCTCGTTGTCGTGCAGGGTATCAATGACTGCATCGTAGCCGAAAGCGGGAATGTCTTGCTCATCTGCAGAGCCGAGGAAGAACAGCGCATCAAGCACTTCGTGGCCGATGCCGCTCTGAAATACGATAAGGAATACAAC","5.00","-12.27","41070","MAVKDNYCVIMGGGIGSRFWPFSRESHPKQFLDFFGTGRSLLQMTYDRFARFIPRENILVVTNELYVDKVREQLPEIEPDQILREPTRRNTAPCIAYASYHIYARNPKANIIVAPSDHLILREDEFVRAASEALEFVADHEHLVTLGIRPSRPETGYGYIQMAEEKTGDFIRVKTFTEKPNAEMASIFLASGEFLWNSGMFVWNVESILAAFRKHLPEVTSSLENGLAHFNTPEERRFIDQAFPYCPSISIDFGVMEKADNVLVMPVDFGWADLGTWGSLYELAQKDDAGNASLKTRTLFYEAERNIVTTDNPQKLVVVQGINDCIVAESGNVLLICRAEEEQRIKHFVADAALKYDKEYN","2327787 2326705 [Shadowed by 2518]","TIGR ID: PG2215","mannose-1-phosphate guanylyltransferase","Cytoplasm","Residues 9-359 showed 41% similarity to AE001862 , D. radiodurans mannose-1-phosphate guanylyltransferase.Residues 9-349 showed 35% similarity to AE001764 , T. maritima mannose-1-phosphate guanylyltransferase.Residues 9-360 showed 34% similarity to AY012193 , D. radiodurans mannose-1-phosphate guanylyltransferase.This sequence is similar to BT2781.","
InterPro
IPR005835
Domain
Nucleotidyl transferase
PF00483\"[7-290]TNTP_transferase
InterPro
IPR013794
Domain
Mannose-6-phosphate isomerase, type II
PD002664\"[111-213]TMan6P_isomerII
noIPR
unintegrated
unintegrated
G3DSA:3.90.550.10\"[7-282]TG3DSA:3.90.550.10
PTHR12526\"[9-360]TPTHR12526
PTHR12526:SF1\"[9-360]TPTHR12526:SF1
SSF53448\"[6-283]TSSF53448


","BeTs to 7 clades of COG0836COG name: Mannose-1-phosphate guanylyltransferaseFunctional Class: MThe phylogenetic pattern of COG0836 is a--k-qvce---uj-------Number of proteins in this genome belonging to this COG is 1","***** PF01050 (Mannose-6-phosphate isomerase) with a combined E-value of 1.8e-50. PF01050A 19-73 PF01050B 80-110 PF01050C 134-163 PF01050D 173-219 PF01050E 232-266 PF01050A 18-72","Residues 9-154 are 39% similar to a (TRANSFERASE PYROPHOSPHORYLASE PROTEIN BIOSYNTHESIS) protein domain (PD000318) which is seen in O66852_AQUAE.Residues 155-291 are 42% similar to a (TRANSFERASE PYROPHOSPHORYLASE MANNOSE-1-PHOSPHATE GDP) protein domain (PD186110) which is seen in O31278_ACEXY.Residues 9-154 are 36% similar to a (MANNOSE-6-PHOSPHATE ISOMERASE EC 5.3.1.8) protein domain (PD114095) which is seen in O31278_ACEXY.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Wed Feb 14 13:41:33 MST 2001","Fri Dec 19 10:04:15 2003","Wed Feb 14 13:41:33 MST 2001","Fri May 18 18:30:40 MDT 2001","Wed Feb 14 13:41:33 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri May 18 18:30:40 MDT 2001","-52% similar to PDB:2CU2 Crystal structure of mannose-1-phosphate guanyltransferase from Thermus thermophilus HB8 (E_value = 6.0E_41);-48% similar to PDB:2GA9 Crystal Structure of the Heterodimeric Vaccinia Virus Polyadenylate Polymerase with Bound ATP-gamma-S (E_value = 6.0E_41);-48% similar to PDB:2GAF Crystal Structure of the Vaccinia Polyadenylate Polymerase Heterodimer (apo form) (E_value = 6.0E_41);-46% similar to PDB:2IM5 Crystal structure of Nicotinate phosphoribosyltransferase from Porphyromonas Gingivalis (E_value = 6.0E_41);","","","Residues 7 to 290 (E-value = 3.3e-54) place PG1936 in the NTP_transferase family which is described as Nucleotidyl transferase (PF00483)","Fri May 18 18:30:40 MDT 2001","34541777","","","","","","1","","30","PG2215" "PG1938","2327863","2329590","1728","TTGTGGTTCGTAAATAATTTCATAGGCCAATGGAGGATTTTTTCCCTCCTCACATCGTTTCGCCGACTTGGTGGTTTTTTCTCTACTTTAGCGGGCGGAAAAATTATTCGCAAGCATATTTTTCTTCTCCCCAAACTCTTTGCTTTTTTCGCAAATGCCAAGGATCGATCGAAAAATCTCATTCTAAAATCACCAATAATTATCACCAATACAAGTATGAAAAGAAGCAGACTTTTAGGCCGCATCGTAGTACTATCTCTATGCGTTGCCACAATTCCGGCTTCGGCTGTCAGCCAACCGCAGATGACGCCCTTGCAGTCGACACACACCTCCGATCGTTCGTTCGGCAGGGGAGCTCAGCAGATAGCTGACGAATGGAGTGCCGCCATGCCCCAAACCACATGGAGCAGCCATGCTGATGTCAGTTGGTACACGGCAGACGGCACGGAATTCACTCTCACCACTGCGGAGCAGTTTGCAGGCTTGGCCAAGCTCGTCAACAGCGGAAAGTCCATGAAGGGTGTGACCATCAAGCTGGGTAATGACGTGGACTTCTCGGCTAATCGCTTCGATGAGGTGATCGGCAAGGATAATGACAACCCCTTTTCCGGCACTTTCGATGGAGGCAACCATACAATAACGGGCGTGATGATCAGCGATCCCGTCTTGGGATTCATCGGATTCTTCGGACAAACCAACGAGGCCATTATTCGCAATACAATCATCCGCAATGCTACGGTCGTAGGTTCGGCCCCGGCAGGTGCTCTCGTTTGCAACATTTACAACAAGGGACTCGTAAGCAACTGCCATGCTTATGACTGTCGAATCGTTTCCGCTCCATACGAAACGAGCTTCGGAGGCAGTGGTGCAGGGTCTTTGGTTGGAGGCCTTTTGGATGAATCCAAGATAGAAAATTGCTCTGCCACTCGTGTGGAAGTCTATAGCCAGAGCCAAAGCGGTGCTTTCATATCCCAGGCATACAATCTGTGCGAAGTAAAGAATTGCTTCGTAACGGACAGCAAGATAATCGCAGACGTTGGGTTGATCGGTGGATTTGTCGGCATAAACTTTGCTTTCTTCCCCGGAACCGAGTCTACTTTCTCCAACTGCTATGCTCTCAATGTGGAAGTCGTATCGCTTGACAGTGGTGATCAAGCCGTTCTCGGAGGGTTTGTCGGTCAGGTATCAGCCAACTTCATTGCCAAGCACTGCTACGTGTCAGCCAAAGTAACGGGAGGAAAAAATCCCGGTGCTTTTGTCGGTATGACGGCAGATGAATCCATGAACTGCAAATACGACGGTTGCTTCTACAACAACGAACAAAACCCGGGTATGGTCGGCATAGGAAACGGCGTCGAAATACCTGCCATCGCAGGTATGCCGGAAGCGGCAATGAAGACTGCCGATATGGCTGCCAAGCTCAATGCAGATCAAAATCCTGCTCCCTGGCTTCAGGCAAACGACGCAAACAACGGTTGGCCGTACCTCAAAGACAACAAACCGGTAATAACCTCTCTGGCCGCTCCCATTTCCCATGAGATCCGTATTTGGGCTACTGCCGGTCGGATATTCATTGCGGGTGCTCCTGCGGGCACATCTGTTCAGGTGTACGATATGCAAGGACATCGGATTTACAATGCTGCCGTGCTTGCAGATCATGACATTGCAGTTGCATCCGGTGTATACGTTGTACGAGCCGGTGACAGCACAGCCAAAGTGATCGTTCCC","7.10","0.66","61329","LWFVNNFIGQWRIFSLLTSFRRLGGFFSTLAGGKIIRKHIFLLPKLFAFFANAKDRSKNLILKSPIIITNTSMKRSRLLGRIVVLSLCVATIPASAVSQPQMTPLQSTHTSDRSFGRGAQQIADEWSAAMPQTTWSSHADVSWYTADGTEFTLTTAEQFAGLAKLVNSGKSMKGVTIKLGNDVDFSANRFDEVIGKDNDNPFSGTFDGGNHTITGVMISDPVLGFIGFFGQTNEAIIRNTIIRNATVVGSAPAGALVCNIYNKGLVSNCHAYDCRIVSAPYETSFGGSGAGSLVGGLLDESKIENCSATRVEVYSQSQSGAFISQAYNLCEVKNCFVTDSKIIADVGLIGGFVGINFAFFPGTESTFSNCYALNVEVVSLDSGDQAVLGGFVGQVSANFIAKHCYVSAKVTGGKNPGAFVGMTADESMNCKYDGCFYNNEQNPGMVGIGNGVEIPAIAGMPEAAMKTADMAAKLNADQNPAPWLQANDANNGWPYLKDNKPVITSLAAPISHEIRIWATAGRIFIAGAPAGTSVQVYDMQGHRIYNAAVLADHDIAVASGVYVVRAGDSTAKVIVP","2327862 2329589","TIGR ID: PG2216","conserved hypothetical protein","Inner membrane, Cytoplasm, Extracellular","This sequence corresponds to gi:34398096 in Genbank.Its nearest neighbor in the NR database is gi:20092283 from Methanosarcina acetivorans C2A.","
InterPro
IPR011493
Domain
GLUG
PF07581\"[249-277]T\"[286-314]T\"[315-343]T\"[345-378]T\"[384-411]TGlug
noIPR
unintegrated
unintegrated
signalp\"[1-25]?signal-peptide
tmhmm\"[78-98]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Mar 10 09:00:33 2005","Thu Mar 10 09:00:33 2005","Thu Feb 15 08:27:47 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Mar 10 09:00:33 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541778","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Thu Mar 10 09:00:33 2005","","1","","30","PG2216" "PG1939","2329766","2331667","1902","ATGATGGAAGTCCGTCCAACGACACTAATCGATCATATAAATTCCCCGGCTGATCTTCGCGCACTAAAACCTGAACAGTTGCCACAGGTATGCCGCGAACTCCGCCGCTATATTTTGGAAGTGCTGTCTGTGACGCCCGGTCATCTCGGCTCCAGCTTGGGCGCAGTGGACTTTACGGTGGCGCTGCACTACGTATTCGATACGCCCTACGACCGTATCGTCTGGGACGTGGGACATCAGGCTTACAGCCATAAGATCCTGACCGGCCGGCGCGAAGACTTCCGCCATTTGCGCCAATGGGGGGGCATCAGCGGTTTCCCCTCGCCTAAAGAAAGCGAATACGACACATTCCCTGCCGGACATGCTTCCAACTCTATCTCCGCAGCACTTGGAATGGCTGTGGCTTCGGCTGCCAAGGATGAGAAACGGAAGGTCATAGCCGTCATTGGAGACGGTTCCATGACGGGAGGTATGGCTTTTGAAGGGCTGAACAATGCATCGTCTTTCCCGAACAATCTGCTGATCATCCTCAATGACAACAACATGTCCATCGACAGGAATGTCGGAGGACTGAACCGCTATATGGTGGACATCCTCACTAGCAAGACGTATAATACGATTCGTTACGACCTTTATAAGGGCTTGCGAAAAATCAATCTGATCAGCGAGACGAACAGAAAAAATCTCCTGCGCTTCAACAACAGCTTCAAGGCACTACTGGCACGCGAGAGCAATTTATTCGAAGGATTCAGCATCCGTTATTTCGGCCCCGTCGATGGCAATAATGTGCTCCGCTTGGTGGAAGTACTCAATCAGATCAAGGATATGGCCGGGCCTAAGATCCTGCACCTGCGAACGATCAAAGGTAAGGGCTACTCTCCGGCCGAGAAGCAGGCTACGATCTGGCATGCGCCGGGCGAATTCGACATCAAATCGGGAGAACGTAAGAAAGGAGAGAACAAGCCCGAGCCACCCAAGTTTCAGGATGTGTTCGGGCATACACTCGTGGAGCTGGCGGACAGAGACGAGCGTGTCGTCGGGGTCACCCCGGCTATGCCGACAGGTTGCTCCATGACCTTCCTGATGAAGAAATACCCGAATAGAGCCTATGACGTGGGTATTGCCGAAGGGCATGCAGTCACGTTTTCGGCCGGTTTGGCCAAGGAAGGGTTGATTCCGTTTTGCAATATATACTCTTCTTTCATCCAGAGGGGATATGATCAGGTGATTCATGATGTAGCCCTGTCCGGCTCACACGTGGTGATTTGCCTCGATCGTGCCGGTCTGGTAGGCGAGGACGGTGCCACACACCACGGGGTGTTCGACATGGCTTTCCTCAGATGCGTACCGGACATCGTCGTGGCTTCTCCGCTGAACGAACACGAGCTGCGCAATCTGATGCTGACCGCATACAAGGGATATGACGGCCCGATGGTGATCCGTTACCCGCGTGGCAAAGGGGTGCTGACCGACTGGCGCAACACTCCGCGACTGGTCGAAATAGCGCGAGGACGCTGTCTGACGGAGGGCGAAGCTATAGCCTTCCTCTCCATAGGCCCCATAGGCAATATGGTACAGAAAGTGGTGGAACGGCTGGCTGAGAAAGGTGTATCTGCAGCCCACTACGATATGGTATTCCTCAAACCGCTTGACGAGGAGATGCTCCATGGCATCGCAAAGAAGTTTGATACGATCATCTCCGTCGAAGATGGTTGCATCCAAGGCGGTTTCGGATCGGCCGTCATGGAGTTTATGGCAGACCATGACTACCACCCACGCATCCGACGGGTGGGAGTCCCCGATCGCTTTATCGGGCAGGGATCTGTGCCCGAACAGTATGCAGACTGTGGCATGGATGCAGACTCTTTGTTGCACTTGACCGAAGAACTTCTGCTGCATCCG","7.00","0.00","70281","MMEVRPTTLIDHINSPADLRALKPEQLPQVCRELRRYILEVLSVTPGHLGSSLGAVDFTVALHYVFDTPYDRIVWDVGHQAYSHKILTGRREDFRHLRQWGGISGFPSPKESEYDTFPAGHASNSISAALGMAVASAAKDEKRKVIAVIGDGSMTGGMAFEGLNNASSFPNNLLIILNDNNMSIDRNVGGLNRYMVDILTSKTYNTIRYDLYKGLRKINLISETNRKNLLRFNNSFKALLARESNLFEGFSIRYFGPVDGNNVLRLVEVLNQIKDMAGPKILHLRTIKGKGYSPAEKQATIWHAPGEFDIKSGERKKGENKPEPPKFQDVFGHTLVELADRDERVVGVTPAMPTGCSMTFLMKKYPNRAYDVGIAEGHAVTFSAGLAKEGLIPFCNIYSSFIQRGYDQVIHDVALSGSHVVICLDRAGLVGEDGATHHGVFDMAFLRCVPDIVVASPLNEHELRNLMLTAYKGYDGPMVIRYPRGKGVLTDWRNTPRLVEIARGRCLTEGEAIAFLSIGPIGNMVQKVVERLAEKGVSAAHYDMVFLKPLDEEMLHGIAKKFDTIISVEDGCIQGGFGSAVMEFMADHDYHPRIRRVGVPDRFIGQGSVPEQYADCGMDADSLLHLTEELLLHP","1-deoxyxylulose-5-phosphate synthase","1-deoxyxylulose-5-phosphate synthase (DXP synthase)is an enzyme so far found in bacteria (gene dxs) andplants (gene CLA1) which catalyzes the thiaminpyrophosphoate-dependent acyloin condensationreaction between carbon atoms 2 and 3 of pyruvateand glyceraldehyde 3-phosphate to yield1-deoxy-D-xylulose-5-phosphate (dxp), a precursor inthe biosynthetic pathway to isoprenoids, thiamin(vitamin B1), and pyridoxol (vitamin B6).This enzyme catalyzes the first step in the nonmevalonate pathway of terpenoid synthesis. TIGR ID: PG2217","1-deoxyxylulose-5-phosphate synthase (DXP synthase)","Cytoplasm","This sequence is similar to CT331 and BT4099.Numerous significant hits in gapped BLAST to 1-D-deoxyxylulose 5-phosphate synthase; e.g. residues 9-623 are 44% similar to U32822 of Haemophilus influenzae, residues 9-619 are 44% similar to AE006088 of Pasteurella multocida, residues 5-620 are 45% similar to AE004821 of Pseudomonas aeruginosa.","
InterPro
IPR005475
Domain
Transketolase, central region
PF02779\"[323-490]TTransket_pyr
PS00802\"[431-447]TTRANSKETOLASE_2
InterPro
IPR005476
Domain
Transketolase, C-terminal
PF02780\"[502-623]TTransketolase_C
InterPro
IPR005477
Family
Deoxyxylulose-5-phosphate synthase
PIRSF005462\"[7-633]TDxp_synth
TIGR00204\"[10-632]Tdxs
InterPro
IPR009014
Domain
Transketolase, C-terminal-like
G3DSA:3.40.50.920\"[501-633]TTransketo_C_like
SSF52922\"[496-631]TTransketo_C_like
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.970\"[20-322]T\"[328-499]TG3DSA:3.40.50.970
PTHR11624\"[353-631]TPTHR11624
PTHR11624:SF20\"[353-631]TPTHR11624:SF20


","BeTs to 10 clades of COG1154COG name: Deoxyxylulose-5-phosphate synthaseFunctional Class: H,IThe phylogenetic pattern of COG1154 is -m---qVcebRhuj---lin-Number of proteins in this genome belonging to this COG is 1","***** IPB000360 (Transketolase) with a combined E-value of 2.9e-48. IPB000360A 46-59 IPB000360B 69-83 IPB000360C 120-131 IPB000360D 142-181 IPB000360E 279-293 IPB000360F 424-459 IPB000360G 512-543***** DM00893 (YRUVATE DEHYDROGENASE (LIPOAMIDE) BETA CHAIN) with a combined E-value of 6.6e-11. DM00893A 352-398 DM00893C 441-482 DM00893E 528-581","Residues 365-621 are 47% similar to a (PYRUVATE DEHYDROGENASE THIAMINE PYROPHOSPHATE E1 SUBUNIT) protein domain (PD000580) which is seen in O67036_AQUAE.Residues 74-352 are 36% similar to a (SYNTHASE 1-DEOXYXYLULOSE-5-PHOSPHATE DXP FLAVOPROTEIN) protein domain (PD003097) which is seen in Q9ZM94_BBBBB.Residues 13-72 are 63% similar to a (SYNTHASE 1-DEOXYXYLULOSE-5-PHOSPHATE DXP) protein domain (PD005882) which is seen in DXS_HAEIN.","","Thu Jun 14 13:14:31 MDT 2001","","Thu Jun 14 13:14:31 MDT 2001","Thu Jun 14 13:14:31 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:14:31 MDT 2001","Thu Jun 14 13:14:31 MDT 2001","Wed Mar 22 16:08:31 MST 2000","Tue Apr 22 13:04:42 2003","Tue Apr 17 15:17:37 MDT 2001","Mon Jan 5 10:51:56 2004","Tue Apr 22 13:01:23 2003","Thu Jun 21 08:25:43 MDT 2001","Thu Jun 21 08:25:43 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Wed Jul 23 14:44:59 2008","-59% similar to PDB:2O1S 1-deoxy-D-xylulose 5-phosphate synthase (DXS) from Escherichia coli (E_value = 3.7E_135);-55% similar to PDB:2O1X 1-deoxy-D-xylulose 5-phosphate synthase (DXS) from Deinococcus radiodurans (E_value = 5.1E_121);-42% similar to PDB:1IK6 3D structure of the E1beta subunit of pyruvate dehydrogenase from the archeon Pyrobaculum aerophilum (E_value = 5.7E_11);","","","Residues 325 to 490 (E-value = 3.9e-49) place PG1939 in the Transket_pyr family which is described as Transketolase, pyridine binding domain (PF02779)Residues 502 to 623 (E-value = 6.5e-22) place PG1939 in the Transketolase_C family which is described as Transketolase, C-terminal domain (PF02780)","Mon Jan 5 10:51:56 2004","34541779","","","","","","1","","30","PG2217" "PG1940","2331723","2333060","1338","ATGAATATTGTTATAGCCGGTGCCGGCGAGGTGGGCACACACTTGGCGAAAATGCTTTCGCAAGAGGAACAGAACATCGTCCTGATCGACCCCAATCCCAAACGATTGGAACTGGCCGCCATGCGTTCCGAGCTGCTCCCTCAGGTGGGCAATCCGCTTTCTCCTTCAGACTTGCTGCAGGCCAATGTGAAGTATGCCGATCTTTTCATCAGCGTGATGCCGGAGGAGGCGGACAACATTTTGGCCTGTGCCCTTGCCTCACGTTTGGGAGCAGGAAAAACGCTGGCACGCATCAACAACAACGAATTCCTCAAACCCGACATGGCACAGTACTTCCGCGATATGGGAGTCCATACCATGATTTACCCCGAGCTGCTGGCTGCACGGGAGATAGTATCGACCATCAAAAACCCGTGGGCACGTCAATACGTGGAGTTGTTCGATGGGGCTTTGGTTCTGGTGGGTGTGAAGGTGCGTGAGGGTGCGCACATTGTAGGCAAATACCTTCATGAGCTGACCCGGACGGGAAATAAGATATTCCACATCGTCGCTATCAAGCGTGACCTTGAGACGATCATCCCGAAGGGGGGTACACAGGTACTGCATGGAGACATCGTATTCTTCGCCACGGCTCAAAACCACTTGGATGAAGTTCGCAAGCTCGCAGGCAAAGACAATCCGCCCGTCCACAAAGTGGTGATCATGGGAGGTAGTCGCATAGCTATCCGTTCCATAGAGATGATCCCGAGAAACATACAAGTGGCGATCATCGAGAAGGACAAGGAGAAAAGCATGCGGATCAGTGCCATCGCTCCGACCAACGTACAGGTGTACAACGGTGACGGACGCGACTCGGACATCCTCATAGAAGCCGGGTTGGATCAGACCGATGTATTCATCGCTCTGACGGAAAATTCGGAGACGAATGTCCTCGCCTGCTTGGGAGCCAAGCGTTTCGGTGTATTCAAGACCATCGCCAAGGAAGAGAATATAGACTACATTTCATTGGCTGACCGCCTTGATATAGGCACGCTCATCAACAAAAAACTTTTGGCCGCCGGCTCCATCTACCGCATATTCCTCGGCGAAGATACGAGTACGGTGAAGTGCCTGACGCTGGCCAATGCCGATGTGGCCGAACTCGTGGCTCATCGCGGAGCACCCGTCACCAAAAGACCGGTGAAAGATCTGAACATTCCGGAGGGGATTACCTTCGGCGGCATGGTGCGCAACGGTGTCCCGCAAATGATCCATGGCGATACGGTGATCGAACCCTACGACCATGTAGTGGTATTCTGTCTGAATACACCACTGAATATCCTGAAAGACTTCTTCGGC","6.60","-2.51","48900","MNIVIAGAGEVGTHLAKMLSQEEQNIVLIDPNPKRLELAAMRSELLPQVGNPLSPSDLLQANVKYADLFISVMPEEADNILACALASRLGAGKTLARINNNEFLKPDMAQYFRDMGVHTMIYPELLAAREIVSTIKNPWARQYVELFDGALVLVGVKVREGAHIVGKYLHELTRTGNKIFHIVAIKRDLETIIPKGGTQVLHGDIVFFATAQNHLDEVRKLAGKDNPPVHKVVIMGGSRIAIRSIEMIPRNIQVAIIEKDKEKSMRISAIAPTNVQVYNGDGRDSDILIEAGLDQTDVFIALTENSETNVLACLGAKRFGVFKTIAKEENIDYISLADRLDIGTLINKKLLAAGSIYRIFLGEDTSTVKCLTLANADVAELVAHRGAPVTKRPVKDLNIPEGITFGGMVRNGVPQMIHGDTVIEPYDHVVVFCLNTPLNILKDFFG","2331722 2333059 [Shorter 2523 232 99]","TIGR ID: PG2218","potassium uptake protein","Cytoplasm, Inner membrane","Residues 1-435 showed 31% similarity to AE004441, P. aeruginosa potassium uptake protein TrkA.Residues 1-435 showed 31% similarity to D28477, V. alginolyticus potassium uptake protein TrkA.Residues 1-432 showed 28% similarity to U32745, H. influenzae potassium uptake protein TrkA.This sequence is similar to BT4098.","
InterPro
IPR003148
Domain
TrkA-N
PF02254\"[3-123]T\"[232-348]TTrkA_N
PS51201\"[2-129]T\"[231-353]TRCK_N
InterPro
IPR006036
Family
TrkA potassium uptake protein
PR00335\"[2-16]T\"[19-33]T\"[279-289]T\"[290-300]T\"[303-317]TKUPTAKETRKA
InterPro
IPR006037
Domain
TrkA-C
PF02080\"[153-223]T\"[378-446]TTrkA_C
PS51202\"[141-224]T\"[366-446]TRCK_C
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.720\"[1-141]T\"[230-366]TG3DSA:3.40.50.720
SSF51735\"[1-224]T\"[230-446]TSSF51735


","BeTs to 12 clades of COG0569COG name: Potassium uptake system NAD-binding component TrkAFunctional Class: PThe phylogenetic pattern of COG0569 is AmtK-Q-CEBRh--gpoL---Number of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 260-392 are 27% similar to a (PROTEIN POTASSIUM SYSTEM CHANNEL UPTAKE TRANSPORT TRK) protein domain (PD001173) which is seen in O27333_METTH.Residues 1-240 are 22% similar to a (K+ TRANSPORT PROTEIN TRKA) protein domain (PD214017) which is seen in O83526_TREPA.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Fri May 18 18:44:55 MDT 2001","Mon Jan 5 10:50:45 2004","Thu Feb 15 08:37:31 MST 2001","","Thu Feb 15 08:37:31 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Tue Jul 13 18:19:30 2004","-54% similar to PDB:1LSS KTN Mja218 CRYSTAL STRUCTURE IN COMPLEX WITH NAD+ (E_value = 4.8E_14);","","","Residues 2 to 123 (E-value = 1e-13) place PG1940 in the TrkA_N family which is described as TrkA-N domain (PF02254)Residues 153 to 223 (E-value = 1.3e-08) place PG1940 in the TrkA_C family which is described as TrkA-C domain (PF02080)Residues 231 to 348 (E-value = 4.1e-06) place PG1940 in the TrkA_N family which is described as TrkA-N domain (PF02254)Residues 378 to 446 (E-value = 1.2e-05) place PG1940 in the TrkA_C family which is described as TrkA-C domain (PF02080)","Mon Jan 5 10:50:45 2004","34541780","","","","","","1","","30","PG2218" "PG1941","2333090","2334550","1461","ATGTTGCAGCACATCAATTTCAAATTCGTTCTCAAGGTGGTAGGCTCTCTATGCCTGTCCGAGATTCTCTTTCTGTTGATTTGTCTGGGTATATCCGTCTACTACAAGGGGAGCGATCTGTTGCCCTTTGTTTACACTATAGGAGTGATGGCCGCGGTAGGCTCCTGTTTCTACCTGCTGGGACGCCGTGCTCGTATGAACAACGCAAGTCGGCGCGAAGGGATGCTTACTGTCACGCTGACGTGGCTGATCCTATCGCTTGTCGGCATGCTTCCTTTTGTCTTCGGCGGATATACTCCCTCCGTGACGGATGCTTTCTTCGAGACCATGTCCGGCTTCACGACCACAGGAGCCACGATATTCCCCGAGGTGGAGTCTTTGCCCCGAGGCATTCTTTTCTGGCGTAGCATTATGCAGTGGCAGGGCGGTATCGGTATCGTGGTCTTTACGGTAGGGCTGCTCCCTATGCTCGGTGCAGGAAGTGCCGTTTCGCAAATATACAATGCGGAAACTACGGGCATCATCCACGATCGTTTTCTGCCGCGTATCCGTCAGGTGGCACGCCGGCTCTGCGGTGTCTATATTCTCGGAACTGCTGTGCTGATACTGCTTTTGTGGTTGGGCCCGATGGGGCTGTTCGATGCCATTTGCCACGCTTTCACTTGTATTTCCACGGGAGGCTACTCCACGCGCAACGGCAGTATCGCGGAGTTTCAGTCCTCATACATCGAATATGTCACCTCGTTTTTCATGTTCTACGGCAGTCTCAGCATCACGCTTCAGTACTTTCTGCTGGTAGGAAAACCGGGAAAACTGATTCGTGATGAGGAAATGCGCACCTTTGTCGTCCTGACCCTCTGTGCCGTTTTGATCACTACGCTATGGCTTTTGTATCGGGGGGAATATCCGAGCTTGGAGGAAAATTTCCGTCATGCTCTCTTTCAAACCTATTCGATCATCAGTACCACCGGCTATACCACGGCCGATTACTTCTCGTGGGGGCCTTTCTTCTGGAGTATAGCTATCGTGATGATGATTGTCTGCGGCTGTGCCGGATCGACGACGGGAGGAATCAAAATCAGTCGCCTCGTCGTCCTGATGAAAAACTTGCGTAACGAATTTAAGAAGCGTACCCACCCCAATTTGATGGTACCTGTACGAATCAATGGGATTATCATCACAGGACAATTGGTCAGTCAGGTACTCGCCTTTGCTTTTCTCTATTTCCTGCTGATTTTCTGCAGCATCATCCTCCTCACGCTTGACGGTATGGACTTCGTTGCCGCAGTCGGTTCGGCCGTATCGGCCATGGGCAACGTCGGTCCCGGATTCGGCGACTACTTCGGCAACTTCAGTCAGGCCGGCGATTTCTCCAAGTGGATCCTTTCTTTCCTGATGCTCACCGGGCGTCTGGAAGTTTTCACCGTTATTTCCATTCTCCATCCTGCTTTCTGGCGCAGA","8.90","9.97","54095","MLQHINFKFVLKVVGSLCLSEILFLLICLGISVYYKGSDLLPFVYTIGVMAAVGSCFYLLGRRARMNNASRREGMLTVTLTWLILSLVGMLPFVFGGYTPSVTDAFFETMSGFTTTGATIFPEVESLPRGILFWRSIMQWQGGIGIVVFTVGLLPMLGAGSAVSQIYNAETTGIIHDRFLPRIRQVARRLCGVYILGTAVLILLLWLGPMGLFDAICHAFTCISTGGYSTRNGSIAEFQSSYIEYVTSFFMFYGSLSITLQYFLLVGKPGKLIRDEEMRTFVVLTLCAVLITTLWLLYRGEYPSLEENFRHALFQTYSIISTTGYTTADYFSWGPFFWSIAIVMMIVCGCAGSTTGGIKISRLVVLMKNLRNEFKKRTHPNLMVPVRINGIIITGQLVSQVLAFAFLYFLLIFCSIILLTLDGMDFVAAVGSAVSAMGNVGPGFGDYFGNFSQAGDFSKWILSFLMLTGRLEVFTVISILHPAFWRR","2332828 2334549 [Bad Olap 2522 232 0]","TIGR ID: PG2219","potassium uptake system protein","Inner membrane, Cytoplasm","Residues 5-487 show 35% similarity to D86411, V. alginolyticus potassium uptake protein TrkH.Residues 5-486 show 34% similarity to VC0042, V. cholerae potassium uptake protein TrkH.Residues 5-486 show 36% similarity to AE001046, A. fulgiduspotassium uptake protein TrkH.This sequence is similar to BT4097.","
InterPro
IPR003445
Family
Cation transporter
PF02386\"[156-485]TTrkH
noIPR
unintegrated
unintegrated
SSF81324\"[399-484]TSSF81324


","BeTs to 10 clades of COG0168COG name: Potassium uptake system component TrkGFunctional Class: PThe phylogenetic pattern of COG0168 is amtkYqvcEB-h--gpol---Number of proteins in this genome belonging to this COG is 1","***** BP03400 (TRANSPORT PROTEIN POTASSIUM TR) with a combined E-value of 9e-06. BP03400B 113-139 BP03400C 175-203","Residues 31-140 are 40% similar to a (PROTEIN TRK SYSTEM POTASSIUM) protein domain (PD008712) which is seen in Q47476_ECOLI.Residues 142-368 are 33% similar to a (PROTEIN TRANSPORT TRANSMEMBRANE POTASSIUM TRK SYSTEM) protein domain (PD003400) which is seen in TRKH_ECOLI.","","Thu Jun 14 13:15:00 MDT 2001","","Thu Jun 14 13:15:00 MDT 2001","Thu Jun 14 13:15:00 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:15:00 MDT 2001","Thu Jun 14 13:15:00 MDT 2001","","","Thu Feb 15 08:47:17 MST 2001","Mon Jan 5 10:49:07 2004","Thu Feb 15 08:47:17 MST 2001","Thu Jun 21 08:20:50 MDT 2001","Thu Jun 21 08:20:50 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Tue Jun 5 15:42:45 MDT 2001","","No significant hits to the PDB database (E-value < E-10).","","","Residues 156 to 485 (E-value = 2.1e-55) place PG1941 in the TrkH family which is described as Cation transport protein (PF02386)","Thu Jun 21 08:20:50 MDT 2001","34541781","","","","","","1","","30","PG2219" "PG1941.1","2335078","2335428","351","TTGGTTTTGCGGTTTCATTCGAGCGAGTTTCTCCTAATCGGTATTGCTGGCTATTACTGTGTGCCGATGGTAGCCGGATGGATTATTGGAGCCGGAGGTGGTATCGGCTCGTATGGACGCAATGTGAATCAGACGGTACAGCGTGGCGCACAAGGTGCATACACGGGGAGCAAGGCGATGGTTGGAGAAGCACAAGTGCTGTTGCCGGTCATGTCGTTTGATGTCTCAAAGGGTCACTCATTAAAGGGGAGTAGATTTCCACTTGTGGAAATTCGGCGTGTACCAAATAGTCGCCTGACACACAATAAGAAGAATAAACAAAAGTGCCTGCTTGTTGTGCAAAGGTCCCAT","","","12694","LVLRFHSSEFLLIGIAGYYCVPMVAGWIIGAGGGIGSYGRNVNQTVQRGAQGAYTGSKAMVGEAQVLLPVMSFDVSKGHSLKGSRFPLVEIRRVPNSRLTHNKKNKQKCLLVVQRSH","","TIGR ID: PG2220","hypothetical protein","Periplasm, Extracellular","No hits found using gapped BLAST search of GenBank.","
InterPro
IPR012424
Family
Homologues of TraJ from Bacteroides conjugative transposon
PF07863\"[10-84]TCtnDOT_TraJ
noIPR
unintegrated
unintegrated
signalp\"[1-26]?signal-peptide
tmhmm\"[10-30]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","Mon Feb 26 22:03:52 MST 2001","","","","Mon Feb 26 16:48:30 MST 2001","","","","Thu Feb 15 10:06:31 MST 2001","Thu Feb 15 10:06:31 MST 2001","Thu Feb 15 10:06:31 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","PG1941.1 is similar to many hypothetical proteins (in order of decreasing similarity): Residues 1-117 have 94% similarity to PG0455.Residues 1-117 have 85% similarity to PG1105.2.Residues 1-117 have 73% similarity to PG1563.Residues 1-90 have 93% similarity to PG0941.1.Residues 20-117 have 70% similarity to PG0787.1.Residues 1-88 have 80% similarity to PG1198.PG1941.1 is also weakly similar to PG1293, TraJ-related protein.","Tue Jun 5 16:27:38 MDT 2001","Tue Jun 5 16:27:38 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Tue Jun 5 16:27:38 MDT 2001","34541782","","","","","","1","","","PG2220" "PG1942","2335569","2336900","1332","ATGACAGATGCTTTCATCTTTGAAAACAAAAAAGCGGCTTTCCTGACTCTTGGCTGCAAACTGAATTTCGCAGAGACTTCGACCATCGGAAAAGCTCTCGCCGAGCAGGGTGTGCGCCCTGTGCGAGAGGGCGAAAAGGCCGATATATGCGTGATCAATACATGCTCCGTAACGGAGCTGGCCGATAAGAAATGCCGCAATGCCATCCGCAAGTTACATAAAGAGCATCCCGGTGCGTTGATGATCGTCACCGGCTGCTATGCCCAGCTCAAACCGGAGGAAATAGCTCGAATAGACGGAGTAGACATCGTACTGGGAGCCGATGAGAAGCTCGACCTCGTAAGTATTCTCAGCCAAAGACCGATACAGGGCTTTGCCGAGCAGACTATTCTCACGACCCCCACAAAGGATATTCGCAAATTTCAACCCGGCTGTTCGGCGGACGACCGCACACGCCATTTCCTCAAAGTGCAGGACGGATGCGACTACCACTGCTCTTACTGCACGATACCCAAAGCTCGCGGACGCAGCCGAAACGGGTCGATAGAGTCTCTCGTCCGACAGGCTGAGGCCGTAGCCGCAGAGGGAGGAAAGGAGATCGTACTTACGGGAGTCAATATAGGTGACTTCGGGCGCAGTACGGGGGAGACATTCCTCGATCTCTTGCGTGCTCTGGACCAAGTGGAAGGTATCGAGCGATACCGAATCGGTTCTATCGAACCAAATCTCCTCTCCGACGAACTTATTGACTTCTGTGCCTCGGCACACCGTATTGCTCCACATTTCCATATGCCGCTTCAGAGCGGATCCGACGATGTGCTCAAGCTCATGCGCCGTCGGTACGATACGGCTCTCTTTCGGGAGCGAGTGGAGCATATCCGCAGGGCATTGCCCCACGCCTTCATCGGGATAGATGTCATTGTAGGAACGAGAGGTGAGAAACCGGAATTCTTCGAGGATTGCTACAGCTTCCTGCAGGACAAGATTTCTTTCAGCCGCCTGCACGTATTCTCCTATTCGGAGCGTCCCGGCACCCAGGCACTGCAAATACCTTATAAGGTAGATGCTCGCGAGAAGCAACGCCGTAGCCGCAGGCTGCTGGATCTGTCCGATCTTCGGCTTGCCGAGTTCTATCGCTCCCAAGAGGGTACGCACCGACGGGTGCTGTGGGAGGACGTTTGCCATGAAGGTCTGATGCAGGGTTTTACGGAGAACTACATCCGCGTAGCGGCTCCCTATGCCGCAGACTCGGTTGGTAAAGTGGAAGAGATCGTATTGGGCAAAACCGATCCAAGCGGAGAATATGTGCAGACAGCCGATACCATATTCCCA","6.80","-1.63","49892","MTDAFIFENKKAAFLTLGCKLNFAETSTIGKALAEQGVRPVREGEKADICVINTCSVTELADKKCRNAIRKLHKEHPGALMIVTGCYAQLKPEEIARIDGVDIVLGADEKLDLVSILSQRPIQGFAEQTILTTPTKDIRKFQPGCSADDRTRHFLKVQDGCDYHCSYCTIPKARGRSRNGSIESLVRQAEAVAAEGGKEIVLTGVNIGDFGRSTGETFLDLLRALDQVEGIERYRIGSIEPNLLSDELIDFCASAHRIAPHFHMPLQSGSDDVLKLMRRRYDTALFRERVEHIRRALPHAFIGIDVIVGTRGEKPEFFEDCYSFLQDKISFSRLHVFSYSERPGTQALQIPYKVDAREKQRRSRRLLDLSDLRLAEFYRSQEGTHRRVLWEDVCHEGLMQGFTENYIRVAAPYAADSVGKVEEIVLGKTDPSGEYVQTADTIFP","2335511 2336899","TIGR ID: PG2221","conserved hypothetical protein (possible Fe-S oxidoreductase)","Cytoplasm","Residues 13-440 showed 40% similarity to AP001511, B. haloduransunknown conserved protein.Residues 13-440 showed 37% similarity to D84432, B. subtilisunknown conserved protein YqeV .Residues 11-426 showed 36% similarity to AE000691, A. aeolicusunknown conserved protein.This sequence is similar to BT2153.","
InterPro
IPR005839
Family
Protein of unknown function UPF0004
PTHR11918\"[5-420]TUPF0004
TIGR00089\"[11-436]TUPF0004
PS01278\"[155-175]TUPF0004
InterPro
IPR006467
Family
MiaB-like tRNA modifying enzyme
TIGR01579\"[14-426]TMiaB-like-C
InterPro
IPR006638
Domain
Elongator protein 3/MiaB/NifB
SM00729\"[151-368]TElp3
InterPro
IPR007197
Domain
Radical SAM
PF04055\"[155-325]TRadical_SAM
InterPro
IPR013848
Domain
Protein of unknown function UPF0004, N-terminal
PF00919\"[11-106]TUPF0004
noIPR
unintegrated
unintegrated
SSF102114\"[99-437]TSSF102114


","BeTs to 14 clades of COG0621COG name: Fe-S oxidoreductases family 1Functional Class: CThe phylogenetic pattern of COG0621 is amtk-QVCEBrhUJ---L-NXNumber of proteins in this genome belonging to this COG is 3","***** IPB001861 (Uncharacterized protein family UPF0004) with a combined E-value of 1.8e-66. IPB001861A 16-32 IPB001861B 47-57 IPB001861C 72-95 IPB001861D 153-198 IPB001861E 199-210 IPB001861F 221-250 IPB001861G 262-281 IPB001861H 302-339","Residues 13-428 are 36% similar to a (PROTEIN BIOSYNTHESIS OXIDASE COPROPORPHYRINOGEN III) protein domain (PD000690) which is seen in YQEV_BACSU.","","Thu Jun 14 13:15:07 MDT 2001","","Thu Jun 14 13:15:07 MDT 2001","Thu Jun 14 13:15:07 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:15:07 MDT 2001","Thu Jun 14 13:15:07 MDT 2001","","","Wed Dec 10 16:51:11 2003","Wed Dec 10 16:51:11 2003","Thu Feb 15 09:06:21 MST 2001","Thu Jun 21 08:16:32 MDT 2001","Thu Jun 21 08:16:32 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 8-376 show 30% similarity to PG0904, conserved hypothetical protein.Residues 15-404 showed 26% similarity to PG0138.","Thu Jun 21 08:20:30 MDT 2001","Thu Apr 5 16:01:10 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 11 to 106 (E-value = 7.2e-27) place PG1942 in the UPF0004 family which is described as Uncharacterized protein family UPF0004 (PF00919)Residues 155 to 325 (E-value = 1.4e-21) place PG1942 in the Radical_SAM family which is described as Radical SAM superfamily (PF04055)","Wed Dec 10 16:51:11 2003","34541783","","","","","","1","","","PG2221" "PG1943","2336900","2337814","915","ATGAAAGCGACACTTTCCCTTTCCTATTATTTGCTGTTAGGCCTGACGTATATGCAGGCAGTGCTACCGCTATGGATGGTGCGGTTGCAGAGTCGTATCCTGGCAGGGCTGCTGCATACCGTCGTTCGCTATCGGAGAAAGGTGGTACGTGACAATCTGACTCGCTGTTTCCCCGAGAAATCTTTACAAGAAATACGCCGGATCGAACGTCGATTTTACTATAATTTCACGTATCAAATCTTGAGTTCCTTCAAGCTTCTGACTTATTCACAGGCGCAACTCCGCCGCCACATCTCATTCGAAAATCTCGATGTCCTGATCCGCTTACGAGCCGAAGGGCACCCTGCCATTCTCCTGATGATGGGGCATTTCGGCAACTGGGAGTACTTTTCCGGCAGTCAGGCCATCATCAAAGATTTGGGCCTACAGATCTATCAGATCTTTCGCCCGTTGAAAAGTACTTCTTCCGACCGGCTCATGCATCGCATACGGGAGCGATTCGGTTCGCGTGGTATAGCCAAGCACGACGTGCCACGTGAACTGCTCCGACTCGTTCGCAATCCTATTCCGACAGAGACTCCACTAGTCATCTTCATCGCCGACCAAAGTCCGGCCTATGCCGGCTCATACTGGACTACCTTCTTCGGCAGAGAAACGGCTTTCTTCAATGGGACGGAGAAGCTCGGCCGTAAGTTCTCTCTGCCGGTAGTCTACATGGATGTGGAGAAAACGGGGCACGATGTCTTCACCGGTACCATCAAGCTCTTGCACCATCCTCAGGATGACAGCCCCGAAGGAAGCATTACGGAAGAATATGTCCGCCTGATGGAGACCACCATCCGTCGCGATCCGTCGCAATGGCTTTGGAGCCACCGCCGCTGGAAACGTCCCCGATTGCATAATACCCGACAACTA","11.10","21.60","36093","MKATLSLSYYLLLGLTYMQAVLPLWMVRLQSRILAGLLHTVVRYRRKVVRDNLTRCFPEKSLQEIRRIERRFYYNFTYQILSSFKLLTYSQAQLRRHISFENLDVLIRLRAEGHPAILLMMGHFGNWEYFSGSQAIIKDLGLQIYQIFRPLKSTSSDRLMHRIRERFGSRGIAKHDVPRELLRLVRNPIPTETPLVIFIADQSPAYAGSYWTTFFGRETAFFNGTEKLGRKFSLPVVYMDVEKTGHDVFTGTIKLLHHPQDDSPEGSITEEYVRLMETTIRRDPSQWLWSHRRWKRPRLHNTRQL","2336899 2337813","TIGR ID: PG2222","lipid A biosynthesis acyltransferase","Inner membrane, Cytoplasm","Residues 22-294 show 27% similarity to AE004747, P. aeruginosa probable lauroyl acyltransferase.Residues 22-294 show 27% similarity to AE003967, X. fastidiosa lauroyl acyltransferase.","
InterPro
IPR004960
Family
Bacterial lipid A biosynthesis acyltransferase
PIRSF026649\"[1-305]TLipidA_AcT
PF03279\"[2-296]TLip_A_acyltrans


","BeTs to 4 clades of COG1560COG name: Lauroyl/myristoyl acyltransferase involved in lipid A biosynthesisFunctional Class: NThe phylogenetic pattern of COG1560 is --------E-rHuj----inxNumber of proteins in this genome belonging to this COG is 1","No significant hit to the Blocks database.","Residues 60-295 are 24% similar to a (ACYLTRANSFERASE TRANSFERASE LIPID A BIOSYNTHESIS PROTEIN) protein domain (PD011612) which is seen in O25057_HELPY.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Feb 15 09:31:01 MST 2001","Thu Feb 15 09:31:01 MST 2001","Thu Feb 15 09:31:01 MST 2001","","Thu Feb 15 09:31:01 MST 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Fri May 18 18:51:12 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 2 to 296 (E-value = 2.2e-11) place PG1943 in the Lip_A_acyltrans family which is described as Bacterial lipid A biosynthesis acyltransferase (PF03279)","Fri May 18 18:51:12 MDT 2001","34541784","","","","","","1","","","PG2222" "PG1944","2337856","2338821","966","ATGCTGGAGGAGTTCCTCCCCTCTCTTATAGCACATACACCGCGACAATCGGCTCGTCTTATCGTAGCCGATAATGGCTCCACGGACGACTCCGTGGAATTTCTGCGTCGCCAGTATCCACAGGTGGAACTGATCCTTTTCCCCGAGAACTACGGCTTTGCCGAAGGCTACAACCGCGCCATCGCACAGACCGAATGCGACTGCGTGGTACTGCTCAATAGCGATGTGGAAGTCTCCGAAGGATGGCTGGATGCTCCGCTCGCATTGCTCCAAGAGCGAAGCGATGTTGCCGCCGTCCAACCCAAAATCCGCGCTCTTCGTGACAAGCATGCGTTCGAGTACGCCGGTGCTGCCGGCGGCTATGTAGATCGTTGGGGTTATCCCTTCTGCCGTGGACGTATCTTTGATGCGGTAGAAACTGATACCGGCCAATACGATGATATAGCAGAGGTATTCTGGGCTTCCGGTGCAGCCCTTTTCATCCGCAGACAGGTGTACATGGCGGTAGGAGGACTGGATCCCCGTTTTTTTGCTCATCAGGAGGAAATAGACCTCTGTTGGCGACTCCATAGCCGTGGCTGGCGTATAGCCGTAGCACCAAGTTCTACTGTTTTCCATTTGGGGGGAGGTAGCCTCGATATGAAAAACCCGCGCAAAGTGTATCTCAACTTCCGAAACAATCTGCTGATGCTGTACAAGAATTTGCCGGAAACAGCCCTCAAGCCCACCATGCGCATCCGCGCTCTACTGGATTTCCTCTCCGCCATGGTTTTCTTGCTCACCGGCAAATTCCGCCATATGCAGGCTGTTGTTCGTGCACGTCGCGACTTCCGTCGTATGCGACCGGACTTCTCCGCTTCCCGTTCCGAGAATCTTCTCCTCGGCTCTATCCCTGCACCGATGAAGCCTTATTCCATCGTCTTCCAATTTTATATCCGCCGGCGTAAAATATTCTCTCGCCTTCCT","9.70","7.27","36883","MLEEFLPSLIAHTPRQSARLIVADNGSTDDSVEFLRRQYPQVELILFPENYGFAEGYNRAIAQTECDCVVLLNSDVEVSEGWLDAPLALLQERSDVAAVQPKIRALRDKHAFEYAGAAGGYVDRWGYPFCRGRIFDAVETDTGQYDDIAEVFWASGAALFIRRQVYMAVGGLDPRFFAHQEEIDLCWRLHSRGWRIAVAPSSTVFHLGGGSLDMKNPRKVYLNFRNNLLMLYKNLPETALKPTMRIRALLDFLSAMVFLLTGKFRHMQAVVRARRDFRRMRPDFSASRSENLLLGSIPAPMKPYSIVFQFYIRRRKIFSRLP","2337813 2338820","TIGR ID: PG2223","glycosyltranferase","Cytoplasm","Residues 2-279 showed 31% similarity to AE001082, A. fulgidus glycosyl transferase.Residues 2-269 showed 31% similarity to AF187550, M. smegmatis rhamnosyl tranferase.Residues 2-279 showed 31% similarity to AE001082, A. fulgidus rhamnosyl tranferase.This sequence is similar to BT2151.","
InterPro
IPR001173
Domain
Glycosyl transferase, family 2
PF00535\"[2-83]TGlycos_transf_2
noIPR
unintegrated
unintegrated
G3DSA:3.90.550.10\"[2-224]TG3DSA:3.90.550.10
SSF53448\"[1-234]TSSF53448


","BeTs to 3 clades of COG1216COG name: Predicted glycosyltransferasesFunctional Class: RThe phylogenetic pattern of COG1216 is A-Tk----e-R----------Number of proteins in this genome belonging to this COG is 3","***** BP02440 (PROTEIN TRANSFERASE PUTATIVE GLYCOSYL RHAMNOSYL BIOSYN) with a combined E-value of 6.6e-07. BP02440C 160-171 BP02440D 181-207","Residues 209-322 are 85% similar to a (ORF1, ORF2 AND ORF3) protein domain (PD081526) which is seen in P72199_PORGI.Residues 1-149 are 98% similar to a (ORF1, ORF2 AND ORF3) protein domain (PD090824) which is seen in P72199_PORGI.Residues 150-208 are identical to a (TRANSFERASE PROTEIN PUTATIVE GLYCOSYL) protein domain (PD002440) which is seen in P72199_PORGI.","","Thu Jun 14 13:15:58 MDT 2001","","Thu Jun 14 13:15:58 MDT 2001","Thu Jun 14 13:15:58 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:15:58 MDT 2001","Thu Jun 14 13:15:58 MDT 2001","","","Mon Apr 2 13:29:17 MDT 2001","Wed Dec 10 16:48:54 2003","Thu Feb 15 09:48:46 MST 2001","Wed Jun 20 15:42:14 MDT 2001","Wed Jun 20 15:42:14 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","Residues 2-221 showed 27% similarity to PG0238, a transferase protein.","Wed Jun 20 15:45:28 MDT 2001","Mon Apr 2 13:29:17 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Jun 20 15:42:14 MDT 2001","34541785","","","","","","1","","","PG2223" "PG1945","2339006","2339560","555","ATGATCGAGAAGATGCTCGAACAGACACGTAAACGACTGATCCGCGGAGCAGGCATCCCCAGCCTGATATGGGGATACGTCACTTTTGCCACGAGTCTGCTGATCCTTTTCGTTTACCCCCATATCGGTTATCGAGCCAATTATCTGTGGATGCTGATCCCGATAGTAGGAGGGGGCCTGACCATTATTTGTAATAGGAAGAGACAGAAAGAAGCACATGCACGTACACAGATAGACCGATTTATAGACACGACATGGATAACCATCGGACTGAATGTTACGGCATTGAGCATACTGGCTTATCGTTTCCCGTTGGCTATTCTTCCCCTTGTACTCATTCTCATAGGAATCGCAACGGCCATCACCGGATTCTCGCACAAGGTAACGTTGCTCAAATACAGCTCCATATTCGGCATACTTGTAGGCTATATGCTTCTGGTGGTGCCTATGAGTGGAAAACTGATGGTGCTGATCTTCGGCCTTACCTTCTTCCTGATGCACTGCGTGCCGGGACACTACCTCTGCTACCTCGAACGAAAAATTTTGCGCGATGCT","10.80","13.04","20929","MIEKMLEQTRKRLIRGAGIPSLIWGYVTFATSLLILFVYPHIGYRANYLWMLIPIVGGGLTIICNRKRQKEAHARTQIDRFIDTTWITIGLNVTALSILAYRFPLAILPLVLILIGIATAITGFSHKVTLLKYSSIFGILVGYMLLVVPMSGKLMVLIFGLTFFLMHCVPGHYLCYLERKILRDA","2338915 2339559 [Shorter 2531 609 99]","TIGR ID: PG2224","hypothetical protein","Inner membrane, Cytoplasm","PG1945 was previously sequenced and submitted to GenBank as AAC44338, orf2 by Duncan,M.J., Emory,S.A. and Almira,E.C.","
noIPR
unintegrated
unintegrated
signalp\"[1-45]?signal-peptide
tmhmm\"[21-39]?\"[45-65]?\"[80-100]?\"[106-124]?\"[129-149]?\"[155-177]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 1-185 are 90% similar to a (ORF1, ORF2 AND ORF3) protein domain (PD103518) which is seen in P72200_PORGI.","","Thu Jun 14 13:16:08 MDT 2001","","Thu Jun 14 13:16:08 MDT 2001","Thu Jun 14 13:16:08 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:16:08 MDT 2001","Thu Jun 14 13:16:08 MDT 2001","","","Thu Feb 15 10:03:50 MST 2001","Thu Apr 5 16:20:31 MDT 2001","Thu Feb 15 10:03:50 MST 2001","","Wed Jun 20 15:38:36 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Apr 5 16:15:51 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Jun 20 15:38:36 MDT 2001","34541786","Thu Feb 15 10:03:50 MST 2001","Duncan,M.J., Emory,S.A. and Almira,E.C.,Porphyromonas gingivalis genes isolated by screening for epithelial cell attachment, Infect. Immun. 64 (9), 3624-3631 (1996)","","Thu Feb 15 10:03:50 MST 2001","","1","","","PG2224" "PG1947","2339583","2339849","267","ATGTCCGAATTGAGGTTGGCCATCATGTCCGTCCTCATGAGCGTGGAGGAGGCCGACTTCCTCTACCTCAAGGAGGTGACGGGGGCTACTTCGGGCAACATCAGTGTACAACTGGACAAACTGAGCACAGCCGGCTACATCGAAATAGAAAAAGGCTACAACGGTAAACGCCCACGTACCACCTGTAGAGCCACCGATGCCGGCCGTGAGGCCTTCTCCGCACATTTCGAAGCACTCAAGTCCTACCTGCCGACAGACTCTACTCAC","5.80","-1.58","9774","MSELRLAIMSVLMSVEEADFLYLKEVTGATSGNISVQLDKLSTAGYIEIEKGYNGKRPRTTCRATDAGREAFSAHFEALKSYLPTDSTH","2339555 2339848 [Shorter 2531 65 45]","TIGR ID: PG2225","conserved hypothetical protein","Cytoplasm","Several hits found with gapped BLAST. Residues 4-83 share 43%-47% identity with three hypothetical proteins from Caulobacter crescentus. Also shows weak similarity (P > 1e-05) to MJ0432, M.jannaschii conserved hypothetical protein.","
InterPro
IPR011991
Domain
Winged helix repressor DNA-binding
G3DSA:1.10.10.10\"[2-88]TWing_hlx_DNA_bd
noIPR
unintegrated
unintegrated
PD463025\"[2-83]TPD463025
SSF46785\"[1-80]TSSF46785


","No hit to the COGs database.","No significant hit to the Blocks database.","Residues 2-72 are 36% similar to a (HYPOTHETICAL PROTEIN MJ0432) protein domain (PD064581) which is seen in Y432_METJA.","","Thu Jun 14 13:16:30 MDT 2001","","Thu Jun 14 13:16:30 MDT 2001","Thu Jun 14 13:16:30 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Fri Jun 15 14:58:34 MDT 2001","Thu Jun 14 13:16:30 MDT 2001","Thu Jun 14 13:16:30 MDT 2001","","","Thu Feb 15 10:20:51 MST 2001","Wed Jun 20 15:31:25 MDT 2001","Thu Feb 15 10:20:51 MST 2001","","Wed Jun 20 14:52:38 MDT 2001","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","","Thu Apr 5 16:22:29 MDT 2001","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","Wed Jun 20 14:52:38 MDT 2001","34541787","","","","","","1","","","PG2225" "PG1948","2339932","2342151","2220","ATGAAGCGTTTAATATCGAGAACCCTTATCTGGTTTCTCCTCATCCTTTGCATCCCTATATCTCTCGCTGCTCAGCGACAGATAGCCGGTACTGTCACCGACACCAAAGACCGGCCTATCGTTTTGGCTAATGTCTATCCGATCAATAGCTTCGACGGTATGGCTACCGACAGTCTCGGACGCTTTCGTTTTACGACGAGCAGCACTTTCCCGATGCGTCTCGTGGTTTCGCATATCAATTATCACTCCGATACGCTTACCATTCGGAAGGGAGATCCGATGGAGAACATCCGCATCCGCCTGCGCGAGACCGATGACTACAAGCTCTCCGAAGTCGTCGTCAGTGTCTCCGCTTTCGGGGTGGGAGGCAAGCAGAACAAGACGGTGCTCAATCCTATGGATGTCTACACGAATCCAAGTGGTAACGGAGATCTCTCGATGGCGCTGCGTCAGACACCCGGCCTGCAGGATGTGGGAGATCGTGAGGGCTTTTTCGTTCGCGGAGGAGCCTCTTGGGAAACGGCCGTGACGATAGAAGGCATTAGAGTGAAGCGTTTTTTCGGCAAGAACAGATTCGACGCTCCTGCTCGTTCACGTTTCGAGACAGGAATGTTCAGCGGCCTTTCGCTCTCCACCGGAGGCTATGGGGCCACGGAAGGCGGTGCGCTGAGCGGACTACTCCGGTTGCGATTGGCGGGTAAGTCTCCCTCGTCCGTCGGGATAGGAATATCCCCGCTTTTTGTAAACGGTGGGGGTGGGCATCTTTCCAGGTCGAATCGTTTCTATATAGAGCAAAATGCCTCAGTGAGCGATGCCGCCTATATCCGTCTGCTGCTCAAGCCGGAGTACAAACTGCCCGGTACCAACCGCTCCTATGCCTACAATGCACGGACGATATGGAACCCGACTTCGCAAGATGAAGTGAAGGGGCTTTTTCTCTTCGTACACGACCTTTCCTCTTCGGCTTTGCGCATACCCTCTCCTGCAACTGCATATATGCTCTATGCGGGACGAAACACCTATGGATTCGGGATGGCTGTTTGGAGGCATGACTTCGAAGGAGGCAAAACGACCTCCACCCTGTCCGCCGGCTATAGCGAAGACCACAACCGGCTGCACCGCCAGCTTGAAATCGAGCCGGACATAGAGAGCACTTTCCGCACCGTAGAGCGCGATGCCAATATCCGCCTTCGCTTCGATTCTCGGATTAAGGCTTGGAAGCTCTCCTACGGATCCGATTATACATATAGCGAAGCCAAGTCTTCTGTTCGGGAGGATAAATCATCAGCCTTACCCACACTGCGAGAACACCTTGTGGCAGCCTATGCCGAAGCCCTCTTCCCTCTGTCGAATCGGATCTCCGCTACAGCCGGATTGCGCGCCGAATATTCCGGACTTACCGAGTCGGCTATTATCCTACCCCGTTTGTCAGCCACTTACAAGCTCTCTCCTTCGAGCCGGATCACCTTGGATGCAGGAGGCTATGCCGCCCCCGGCGACTACTACCTCTCCCATGGCATTGTGCCGCAAAAGCGCGAACACTCGCAGCAGTACAACCTGACCTATGAATGGCGACCCTCGCGTACACAAGTGCTACGCCTCCAAGCCTATGACAAAGAATATTCCCGACTGACCACGTTGGCTCCCGATGGCACAGCCTCCAACCTCGGCAAGGGATATGCACGGGGGCTGGACTTCTTCTGGAAAGCATCCGGACTGATCAGATCTTTCGAGCATTGGTTCTCCTATTCCTATACCGATGCTCGCAGGCAGTATCTCTTTTCGCCCGATCAGGAACGACCGGATTTCGTAGCCAAGCACACTCTTTCCACCGTGCTGAAGTATTGGTGTGCTCCTATCAGCTCACTATTCAACGTGTCGATGTCCTGGCGTTCCGGCATGACCTACCACGATCCCAACATAGCCTCCCCGGCTTATTTGAACGCATCGCTACCGGCCAATTTCAGCATGAGTGCCTCGTACAATTACCCATTCAAGTACAAGAAAGCCGGCGGTGTACTTGTCTTCAGCGTGCACAATCTGTTCAATTCGGATCCCACCTACGGCTATCGCTTCGGGGACAAACCCATCGGAGGCGTATATCCATCGGTCAGAATCTCTACCCCTTACCGACAGTTTTATATGGTAGGTCTGTTCATCAACTTCGGAATAGACCGCCGACAAGAAATCATGAACACCGATATAAAAATCAAATCAAGA","10.50","27.31","82821","MKRLISRTLIWFLLILCIPISLAAQRQIAGTVTDTKDRPIVLANVYPINSFDGMATDSLGRFRFTTSSTFPMRLVVSHINYHSDTLTIRKGDPMENIRIRLRETDDYKLSEVVVSVSAFGVGGKQNKTVLNPMDVYTNPSGNGDLSMALRQTPGLQDVGDREGFFVRGGASWETAVTIEGIRVKRFFGKNRFDAPARSRFETGMFSGLSLSTGGYGATEGGALSGLLRLRLAGKSPSSVGIGISPLFVNGGGGHLSRSNRFYIEQNASVSDAAYIRLLLKPEYKLPGTNRSYAYNARTIWNPTSQDEVKGLFLFVHDLSSSALRIPSPATAYMLYAGRNTYGFGMAVWRHDFEGGKTTSTLSAGYSEDHNRLHRQLEIEPDIESTFRTVERDANIRLRFDSRIKAWKLSYGSDYTYSEAKSSVREDKSSALPTLREHLVAAYAEALFPLSNRISATAGLRAEYSGLTESAIILPRLSATYKLSPSSRITLDAGGYAAPGDYYLSHGIVPQKREHSQQYNLTYEWRPSRTQVLRLQAYDKEYSRLTTLAPDGTASNLGKGYARGLDFFWKASGLIRSFEHWFSYSYTDARRQYLFSPDQERPDFVAKHTLSTVLKYWCAPISSLFNVSMSWRSGMTYHDPNIASPAYLNASLPANFSMSASYNYPFKYKKAGGVLVFSVHNLFNSDPTYGYRFGDKPIGGVYPSVRISTPYRQFYMVGLFINFGIDRRQEIMNTDIKIKSR","2339931 2342150","TIGR ID: PG2226","hypothetical protein","Outer membrane, Extracellular","PG1948 was previously sequenced and submitted to GenBank as AAC44339 , orf 3 by Duncan,M.J., Emory,S.A. and Almira,E.C..","
InterPro
IPR000531
Domain
TonB-dependent receptor
PF00593\"[473-722]TTonB_dep_Rec
InterPro
IPR008969
Domain
Carboxypeptidase regulatory region
SSF49464\"[27-104]TCarboxypepD_reg
InterPro
IPR012910
Domain
TonB-dependent receptor, plug
PF07715\"[141-226]TPlug
noIPR
unintegrated
unintegrated
G3DSA:2.40.170.20\"[258-692]TG3DSA:2.40.170.20
SSF56935\"[109-722]TSSF56935


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Thu Feb 15 10:43:29 MST 2001","Wed Mar 28 14:23:36 MST 2001","Thu Feb 15 10:25:34 MST 2001","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Wed Mar 28 14:27:16 MST 2001","Wed Mar 28 14:23:36 MST 2001","No significant hits to the PDB database (E-value < E-10).","","","Residues 127 to 722 (E-value = 1.1e-06) place PG1948 in the TonB_dep_Rec family which is described as TonB dependent receptor (PF00593)","Wed Mar 28 14:23:36 MST 2001","34541788","Thu Feb 15 10:25:34 MST 2001","Duncan,M.J., Emory,S.A. and Almira,E.C., Porphyromonas gingivalis genes isolated by screening for epithelial cell attachment, Infect. Immun. 64 (9), 3624-3631 (1996)","","Thu Feb 15 10:25:34 MST 2001","","1","","","PG2226" "PG1949","2342151","2342804","654","ATGAAAACTTTCAAAAGAATCGCCCTGCTCCTCGTCGCAGGCTTTGCAGGGCTGTGTGCAACATCCGCACAAGGGACGGCTTATGCCGAAGTGATGAATCGAAAAGTAGCTGCTCTGGACAGTGTGCCACCGACGGAATATGCCACACTGGCTGCGGACTTTTCCCGGATAGCAGCCGTGGAAGGATCCGACTGGATGGCTGCTTATTATACCGCCTACTGCCGGATAATCCCGGCCTTCGGCAACCCCTCTGAGGCCGATCGGCTATGCGAAGAAGCCGAATCCATGCTGAGCAAAGCGGAATCCCTCGGCGGAGATCTGTCCGAAATAGCCTGTTTGCGTAGCATGGCCGCCTCGGCACGCCTTTTGGTCAATCCGCAAGAACGCTGGCAGACATATGGAGCAGAGAGCAGCCGACAGTTGGCTGTCGCCCTTGAAGCCAACCCTGCTAATCCGCGAGCCTACTTCCTGCAGGCCCAAAGCCTGCTGTACACCCCTGCGCAGTTCGGAGGGGGCAAGGACAAGGCCCTCCCTTTTGCCGAGAAGAGCGTGTCCTGCTATGCTGCGGCCACAGTGTCGCCTGCCTATGCTCCGCACTGGGGAGAGCAGCAAGCACGCCAACTCCTAATGCTTTGCAAGGCAGAAACCCAAGAG","5.20","-3.04","23424","MKTFKRIALLLVAGFAGLCATSAQGTAYAEVMNRKVAALDSVPPTEYATLAADFSRIAAVEGSDWMAAYYTAYCRIIPAFGNPSEADRLCEEAESMLSKAESLGGDLSEIACLRSMAASARLLVNPQERWQTYGAESSRQLAVALEANPANPRAYFLQAQSLLYTPAQFGGGKDKALPFAEKSVSCYAAATVSPAYAPHWGEQQARQLLMLCKAETQE","2342150 2342803 [Delay by 483 2534 484 0]","TIGR ID: PG2227","hypothetical protein","Periplasm","This sequence corresponds to gi:34398107 in Genbank.","
noIPR
unintegrated
unintegrated
signalp\"[1-23]?signal-peptide
tmhmm\"[9-29]?transmembrane_regions


","No hit to the COGs database.","No significant hit to the Blocks database.","No significant hit to the ProDom database.","","","","","","Wed Mar 8 14:10:30 MST 2000","Wed Mar 8 14:10:30 MST 2000","","","","","Tue Nov 28 15:10:04 MST 2000","Thu Mar 10 09:04:47 2005","Tue Nov 28 15:10:04 MST 2000","","","yes","Fri Feb 20 15:41:32 MST 1998","No paralogs found in P. gingivalis.","Tue Nov 28 15:10:04 MST 2000","Thu Mar 10 09:04:47 2005","No significant hits to the PDB database (E-value < E-10).","","","No significant hits to the Pfam 11.0 database","","34541789","","Zhang Y, Wang T, Chen W, Yilmaz O, Park Y, Jung IY, Hackett M, Lamont RJ.Differential protein expression by Porphyromonas gingivalis in response to secreted epithelial cell components.Proteomics. 2005 Jan;5(1):198-211.PMID: 15619293","","Thu Mar 10 09:04:47 2005","","1","","","PG2227"