
FastTree -gamma -log org_core_seq_gap_65_fasttree_jttcat.log org_core_seq_65.faa-gbg > org_core_seq_gap_65_fasttree_jttcat.tre
nw_reroot org_core_seq_gap_65_fasttree_jttcat.tre > org_core_seq_gap_65_fasttree_jttcat.reroot.tre
nw_order -c n org_core_seq_gap_65_fasttree_jttcat.reroot.tre > org_core_seq_gap_65_fasttree_jttcat.reroot.order.tre
nw_display -s -v 20 -l 'font-weight:bold'  -b 'visibility:hidden' -i 'font-size:small;fill:blue' -w 800 -W 20 org_core_seq_gap_65_fasttree_jttcat.reroot.order.tre > org_core_seq_gap_65_fasttree_jttcat.reroot.order.svg

FastTree -gamma -log org_core_seq_gap_65_fasttree_wagcat.log -wag org_core_seq_65.faa-gbg > org_core_seq_gap_65_fasttree_wagcat.tre
nw_reroot org_core_seq_gap_65_fasttree_wagcat.tre > org_core_seq_gap_65_fasttree_wagcat.reroot.tre
nw_order -c n org_core_seq_gap_65_fasttree_wagcat.reroot.tre > org_core_seq_gap_65_fasttree_wagcat.reroot.order.tre
nw_display -s -v 20 -l 'font-weight:bold'  -b 'visibility:hidden' -i 'font-size:small;fill:blue' -w 800 -W 20 org_core_seq_gap_65_fasttree_wagcat.reroot.order.tre > org_core_seq_gap_65_fasttree_wagcat.reroot.order.svg

FastTree -gamma -log org_core_seq_gap_65_fasttree_lgcat.log -lg org_core_seq_65.faa-gbg > org_core_seq_gap_65_fasttree_lgcat.tre
nw_reroot org_core_seq_gap_65_fasttree_lgcat.tre > org_core_seq_gap_65_fasttree_lgcat.reroot.tre
nw_order -c n org_core_seq_gap_65_fasttree_lgcat.reroot.tre > org_core_seq_gap_65_fasttree_lgcat.reroot.order.tre
nw_display -s -v 20 -l 'font-weight:bold'  -b 'visibility:hidden' -i 'font-size:small;fill:blue' -w 800 -W 20 org_core_seq_gap_65_fasttree_lgcat.reroot.order.tre > org_core_seq_gap_65_fasttree_lgcat.reroot.order.svg




