HOMD ::species::Campylobacter showae

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16S rRNA RefSeq: V15.23 Genomic RefSeq: V10.1

Species: Campylobacter showae

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Full Lineage: Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter; Campylobacter showae

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From: Segata et al.(2012)	No Notes

From: Eren et al.(2014) (V1-V3)

No Notes

percent abundance

	SubP	SupP	KG	BM	HP	SV	TH	PT	TD	ST
Avg	0.807	0.723	0.265	0.046	0.050	0.380	0.145	0.243	0.055	0.001
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	1.712	1.832	0.477	0.107	0.149	0.980	0.510	0.723	0.133	0.000
Stdev	1.202	0.992	0.821	0.091	0.082	0.567	0.340	0.564	0.162	0.005
Prev	88.312	84.416	46.753	54.545	49.351	84.416	50.649	63.636	36.364	1.299

From: Eren et al.(2014) (V3-V5)

Notes:

Reads equally close to C. rectus and C. showae were assigned half to each taxon.

percent abundance

	SubP	SupP	KG	BM	HP	SV	TH	PT	TD	ST
Avg	0.174	0.164	0.078	0.013	0.014	0.108	0.034	0.063	0.014	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.496	0.433	0.146	0.051	0.042	0.342	0.083	0.170	0.023	0.000
Stdev	0.270	0.274	0.262	0.026	0.031	0.176	0.085	0.155	0.059	0.000
Prev	70.946	75.000	35.135	34.459	31.757	66.892	39.865	60.135	27.703	0.000

From: Dewhirst 35x9 data (not published yet)

No Notes

percent abundance

	SubP	SupP	KG	BM	HP	SV	TH	PT	TD	NS
Avg	0.276	0.281	0.026	0.057	0.028	0.021	0.110	0.092	0.027	0.000
10^thp	0.000	0.001	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.821	0.674	0.098	0.114	0.040	0.054	0.207	0.094	0.048	0.000
Stdev	0.572	0.473	0.045	0.130	0.075	0.038	0.338	0.311	0.087	0.000
Prev	91.429	88.235	69.444	79.412	75.000	66.667	78.788	70.968	55.882	0.000