HOMD ::species::Treponema socranskii

HOME
Taxonomy
Genomes
Proteomes
- View Genomic Tree based on Conserved Proteins
- All Protein Sequences Annotated from Genomes
16S rRNA Microbiome
Animal Microbiomes
- Mouse (MOMD)
Downloads
- Download Batch HOMD Data
- HOMD FTP Site
Resources
HOMD-v2
[Page-Help]

16S rRNA RefSeq: V15.23 Genomic RefSeq: V10.1

Species: Treponema socranskii

Download Options

Full Lineage: Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Treponemataceae; Treponema; Treponema socranskii

^th

^th

^th

^th

From: Segata et al.(2012)	No Notes

From: Eren et al.(2014) (V1-V3)

No Notes

percent abundance

	SubP	SupP	KG	BM	HP	SV	TH	PT	TD	ST
Avg	0.409	0.168	0.000	0.011	0.006	0.025	0.037	0.071	0.003	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	1.413	0.403	0.000	0.020	0.000	0.071	0.065	0.243	0.010	0.000
Stdev	0.708	0.471	0.000	0.038	0.025	0.053	0.123	0.163	0.010	0.003
Prev	57.143	44.156	0.000	12.987	9.091	35.065	25.974	42.857	11.688	1.299

From: Eren et al.(2014) (V3-V5)

Notes:

Reads equally close to T. socranskii, T. sp. HMT 268, and T. sp. HMT 269 were assigned one-third to each taxon.

percent abundance

	SubP	SupP	KG	BM	HP	SV	TH	PT	TD	ST
Avg	0.297	0.129	0.000	0.009	0.003	0.027	0.010	0.027	0.003	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.848	0.392	0.000	0.016	0.006	0.073	0.023	0.069	0.010	0.000
Stdev	0.401	0.293	0.002	0.056	0.016	0.044	0.033	0.065	0.010	0.000
Prev	73.649	62.838	3.378	25.676	10.811	56.081	30.405	45.946	18.919	0.000

From: Dewhirst 35x9 data (not published yet)

No Notes

percent abundance

	SubP	SupP	KG	BM	HP	SV	TH	PT	TD	NS
Avg	0.300	0.161	0.006	0.016	0.004	0.004	0.006	0.026	0.001	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.888	0.385	0.012	0.021	0.008	0.010	0.016	0.082	0.004	0.000
Stdev	0.615	0.456	0.020	0.043	0.010	0.005	0.021	0.056	0.004	0.000
Prev	85.714	67.647	27.778	52.941	28.571	44.444	39.394	48.387	17.647	0.000