Genome Explorer: Variovorax paradoxus CSUSB (SEQF3742.1)
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NCBI Annotation for SEQF3742.1
| Genome selected: Variovorax paradoxus CSUSB | |||
| Contigs: | 1 | Bases: | 5574400 bps |
| CDS: | 58 | rRNA: | 6 |
| tmRNA: | 1 | tRNA: | 52 |
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| # | Molecule | PID | NA (Length)(Seq) |
AA (Length)(Seq) |
Range | Gene | Gene Product |
|---|---|---|---|---|---|---|---|
| 5001 | CP046622.1 | QGW85068.1 JB | 315 [NA] | 104 [AA] | 4201739-4202053 | GOQ09_19555 | QacE family quaternary ammonium compound efflux SMR transporter |
| 5002 | CP046622.1 | QGW85069.1 JB | 570 [NA] | 189 [AA] | 4216949-4217518 | GOQ09_19625 | TetR family transcriptional regulator |
| 5003 | CP046622.1 | QGW85070.1 JB | 999 [NA] | 332 [AA] | 4223590-4224588 | GOQ09_19655 | helix-turn-helix domain-containing protein |
| 5004 | CP046622.1 | QGW85071.1 JB | 1041 [NA] | 346 [AA] | 4238780-4239820 | GOQ09_19710 | sorbosone dehydrogenase family protein |
| 5005 | CP046622.1 | QGW85072.1 JB | 1419 [NA] | 472 [AA] | 4269323-4270741 | GOQ09_19845 | aldehyde dehydrogenase family protein |
| 5006 | CP046622.1 | QGW85073.1 JB | 1419 [NA] | 472 [AA] | 4297827-4299245 | GOQ09_19980 | DUF3526 domain-containing protein |
| 5007 | CP046622.1 | QGW85074.1 JB | 342 [NA] | 113 [AA] | 4305453-4305794 | GOQ09_20015 | hypothetical protein |
| 5008 | CP046622.1 | QGW85075.1 JB | 1131 [NA] | 376 [AA] | 4305965-4307095 | GOQ09_20020 | MFS transporter |
| 5009 | CP046622.1 | QGW85076.1 JB | 1032 [NA] | 343 [AA] | 4307188-4308219 | GOQ09_20025 | alpha/beta fold hydrolase |
| 5010 | CP046622.1 | QGW85077.1 JB | 600 [NA] | 199 [AA] | 4327377-4327976 | GOQ09_20110 | TRAP transporter small permease subunit |
| 5011 | CP046622.1 | QGW85078.1 JB | 522 [NA] | 173 [AA] | 4341449-4341970 | GOQ09_20190 | nucleoside deaminase |
| 5012 | CP046622.1 | QGW85079.1 JB | 420 [NA] | 139 [AA] | 4344204-4344623 | GOQ09_20210 | sel1 repeat family protein |
| 5013 | CP046622.1 | QGW85080.1 JB | 1221 [NA] | 406 [AA] | 4344744-4345964 | GOQ09_20215 | M20/M25/M40 family metallo-hydrolase |
| 5014 | CP046622.1 | QGW85081.1 JB | 525 [NA] | 174 [AA] | 4348538-4349062 | GOQ09_20230 | hydrolase Nlp/P60 |
| 5015 | CP046622.1 | QGW85082.1 JB | 477 [NA] | 158 [AA] | 4359627-4360103 | GOQ09_20295 | SgcJ/EcaC family oxidoreductase |
| 5016 | CP046622.1 | QGW85083.1 JB | 756 [NA] | 251 [AA] | 4369639-4370394 | GOQ09_20355 | LuxR family transcriptional regulator |
| 5017 | CP046622.1 | QGW85084.1 JB | 939 [NA] | 312 [AA] | 4371147-4372085 | GOQ09_20365 | tripartite tricarboxylate transporter substrate binding protein |
| 5018 | CP046622.1 | QGW85085.1 JB | 900 [NA] | 299 [AA] | 4375219-4376118 | GOQ09_20385 | LysR family transcriptional regulator |
| 5019 | CP046622.1 | QGW85086.1 JB | 1548 [NA] | 515 [AA] | 4389400-4390947 | GOQ09_20455 | urea ABC transporter permease subunit UrtB |
| 5020 | CP046622.1 | QGW85087.1 JB | 621 [NA] | 206 [AA] | 4392588-4393208 | GOQ09_20465 | transcriptional regulator |
| 5021 | CP046622.1 | QGW85088.1 JB | 333 [NA] | 110 [AA] | 4423236-4423568 | GOQ09_20640 | cytochrome o ubiquinol oxidase subunit IV |
| 5022 | CP046622.1 | QGW85089.1 JB | 822 [NA] | 273 [AA] | 4423607-4424428 | GOQ09_20645 | SURF1 family protein |
| 5023 | CP046622.1 | QGW85090.1 JB | 2115 [NA] | 704 [AA] | 4439075-4441189 | GOQ09_20720 | 4Fe-4S dicluster domain-containing protein |
| 5024 | CP046622.1 | QGW85091.1 JB | 744 [NA] | 247 [AA] | 4443228-4443971 | GOQ09_20740 | molybdate ABC transporter substrate-binding protein |
| 5025 | CP046622.1 | QGW85092.1 JB | 1584 [NA] | 527 [AA] | 4464345-4465928 | GOQ09_20840 | L-aspartate oxidase |
| 5026 | CP046622.1 | QGW85093.1 JB | 1443 [NA] | 480 [AA] | 4474232-4475674 | GOQ09_20900 | PDZ domain-containing protein |
| 5027 | CP046622.1 | QGW85094.1 JB | 1320 [NA] | 439 [AA] | 4480059-4481378 | GOQ09_20925 | histidine kinase |
| 5028 | CP046622.1 | QGW85095.1 JB | 432 [NA] | 143 [AA] | 4497509-4497940 | GOQ09_21035 | HIT domain-containing protein |
| 5029 | CP046622.1 | QGW85096.1 JB | 1740 [NA] | 579 [AA] | 4512831-4514570 | GOQ09_21090 | ShlB/FhaC/HecB family hemolysin secretion/activation protein |
| 5030 | CP046622.1 | QGW85097.1 JB | 357 [NA] | 118 [AA] | 4544835-4545191 | GOQ09_21195 | flagellar transcriptional regulator FlhD |
| 5031 | CP046622.1 | QGW85098.1 JB | 279 [NA] | 92 [AA] | 4547022-4547300 | GOQ09_21210 | flagellar protein FliT |
| 5032 | CP046622.1 | QGW85099.1 JB | 648 [NA] | 215 [AA] | 4554775-4555422 | GOQ09_21250 | flagellar assembly protein FliH |
| 5033 | CP046622.1 | QGW85100.1 JB | 1716 [NA] | 571 [AA] | 4570407-4572122 | GOQ09_21325 | HAMP domain-containing protein |
| 5034 | CP046622.1 | QGW85101.1 JB | 444 [NA] | 147 [AA] | 4578043-4578486 | GOQ09_21350 | chemotaxis protein CheW |
| 5035 | CP046622.1 | QGW85102.1 JB | 714 [NA] | 237 [AA] | 4585949-4586662 | GOQ09_21400 | flagellar basal body P-ring formation protein FlgA |
| 5036 | CP046622.1 | QGW85103.1 JB | 849 [NA] | 282 [AA] | 4591333-4592181 | GOQ09_21435 | peptide chain release factor N(5)-glutamine methyltransferase |
| 5037 | CP046622.1 | QGW85104.1 JB | 669 [NA] | 222 [AA] | 4597005-4597673 | GOQ09_21465 | RNA pyrophosphohydrolase |
| 5038 | CP046622.1 | QGW85105.1 JB | 525 [NA] | 174 [AA] | 4597690-4598214 | GOQ09_21470 | hypothetical protein |
| 5039 | CP046622.1 | QGW85106.1 JB | 993 [NA] | 330 [AA] | 4601421-4602413 | GOQ09_21495 | octaprenyl diphosphate synthase |
| 5040 | CP046622.1 | QGW85107.1 JB | 1494 [NA] | 497 [AA] | 4607306-4608799 | GOQ09_21525 | MBOAT family protein |
| 5041 | CP046622.1 | QGW85108.1 JB | 603 [NA] | 200 [AA] | 4622112-4622714 | GOQ09_21590 | hypothetical protein |
| 5042 | CP046622.1 | QGW85109.1 JB | 588 [NA] | 195 [AA] | 4637173-4637760 | GOQ09_21665 | L,D-transpeptidase |
| 5043 | CP046622.1 | QGW85110.1 JB | 513 [NA] | 170 [AA] | 4696383-4696895 | GOQ09_21875 | hypothetical protein |
| 5044 | CP046622.1 | QGW85111.1 JB | 465 [NA] | 154 [AA] | 4700631-4701095 | GOQ09_21905 | hypothetical protein |
| 5045 | CP046622.1 | QGW85112.1 JB | 1428 [NA] | 475 [AA] | 4721807-4723234 | GOQ09_22025 | insulinase family protein |
| 5046 | CP046622.1 | QGW85113.1 JB | 465 [NA] | 154 [AA] | 4728359-4728823 | GOQ09_22050 | DUF962 domain-containing protein |
| 5047 | CP046622.1 | QGW85114.1 JB | 834 [NA] | 277 [AA] | 4771552-4772385 | GOQ09_22285 | alpha/beta fold hydrolase |
| 5048 | CP046622.1 | QGW85115.1 JB | 1305 [NA] | 434 [AA] | 4790989-4792293 | GOQ09_22385 | type II and III secretion system protein family protein |
| 5049 | CP046622.1 | QGW85116.1 JB | 1416 [NA] | 471 [AA] | 4830395-4831810 | GOQ09_22550 | pyruvate kinase |
| 5050 | CP046622.1 | QGW85117.1 JB | 939 [NA] | 312 [AA] | 4849621-4850559 | GOQ09_22650 | pectate lyase |
| 5051 | CP046622.1 | QGW85118.1 JB | 918 [NA] | 305 [AA] | 4883103-4884020 | GOQ09_22790 | ribokinase |
| 5052 | CP046622.1 | QGW85119.1 JB | 387 [NA] | 128 [AA] | 4891069-4891455 | GOQ09_22830 | hypothetical protein |
| 5053 | CP046622.1 | QGW85120.1 JB | 1284 [NA] | 427 [AA] | 4898403-4899686 | GOQ09_22875 | c-type cytochrome |
| 5054 | CP046622.1 | QGW85121.1 JB | 675 [NA] | 224 [AA] | 4907571-4908245 | GOQ09_22920 | 1-acyl-sn-glycerol-3-phosphate acyltransferase |
| 5055 | CP046622.1 | QGW85122.1 JB | 948 [NA] | 315 [AA] | 4911066-4912013 | GOQ09_22945 | AAA family ATPase |
| 5056 | CP046622.1 | QGW85123.1 JB | 612 [NA] | 203 [AA] | 4915080-4915691 | GOQ09_22975 | OmpA family protein |
| 5057 | CP046622.1 | QGW85124.1 JB | 1116 [NA] | 371 [AA] | 4943937-4945052 | GOQ09_23095 | ABC transporter substrate-binding protein |
| 5058 | CP046622.1 | QGW85125.1 JB | 1425 [NA] | 474 [AA] | 4970360-4971784 | GOQ09_23220 | indoleacetamide hydrolase |
| 5059 | CP046622.1 | QGW85126.1 JB | 960 [NA] | 319 [AA] | 4984450-4985409 | GOQ09_23280 | DUF45 domain-containing protein |
| 5060 | CP046622.1 | QGW85127.1 JB | 1614 [NA] | 537 [AA] | 5054224-5055837 | GOQ09_23590 | AMP-binding protein |
| 5061 | CP046622.1 | QGW85128.1 JB | 2085 [NA] | 694 [AA] | 5066227-5068311 | GOQ09_23635 | prolyl oligopeptidase family serine peptidase |
| 5062 | CP046622.1 | QGW85129.1 JB | 696 [NA] | 231 [AA] | 5069248-5069943 | GOQ09_23645 | DUF2242 domain-containing protein |
| 5063 | CP046622.1 | QGW85130.1 JB | 594 [NA] | 197 [AA] | 5124104-5124697 | GOQ09_23840 | LemA family protein |
| 5064 | CP046622.1 | QGW85131.1 JB | 2637 [NA] | 878 [AA] | 5127518-5130154 | GOQ09_23865 | ligase-associated DNA damage response DEXH box helicase |
| 5065 | CP046622.1 | QGW85132.1 JB | 1002 [NA] | 333 [AA] | 5136694-5137695 | GOQ09_23900 | ABC transporter permease |
| 5066 | CP046622.1 | QGW85133.1 JB | 1170 [NA] | 389 [AA] | 5139214-5140383 | GOQ09_23910 | ROK family protein |
| 5067 | CP046622.1 | QGW85134.1 JB | 474 [NA] | 157 [AA] | 5147275-5147748 | GOQ09_23955 | ATP synthase subunit I |
| 5068 | CP046622.1 | QGW85135.1 JB | 756 [NA] | 251 [AA] | 5158213-5158968 | GOQ09_24015 | response regulator |
| 5069 | CP046622.1 | QGW85136.1 JB | 1269 [NA] | 422 [AA] | 5163131-5164399 | GOQ09_24050 | MFS transporter |
| 5070 | CP046622.1 | QGW85137.1 JB | 210 [NA] | 69 [AA] | 5168338-5168547 | GOQ09_24090 | 50S ribosomal protein L29 |
| 5071 | CP046622.1 | QGW85138.1 JB | 1602 [NA] | 533 [AA] | 5173883-5175484 | GOQ09_24140 | hypothetical protein |
| 5072 | CP046622.1 | QGW85139.1 JB | 1116 [NA] | 371 [AA] | 5183022-5184137 | GOQ09_24185 | VanZ family protein |
| 5073 | CP046622.1 | QGW85140.1 JB | 990 [NA] | 329 [AA] | 5184949-5185938 | GOQ09_24195 | porphobilinogen synthase |
| 5074 | CP046622.1 | QGW85141.1 JB | 960 [NA] | 319 [AA] | 5220043-5221002 | GOQ09_24355 | tripartite tricarboxylate transporter substrate binding protein |
| 5075 | CP046622.1 | QGW85142.1 JB | 366 [NA] | 121 [AA] | 5315106-5315471 | GOQ09_24820 | 50S ribosomal protein L18 |
| 5076 | CP046622.1 | QGW85143.1 JB | 1515 [NA] | 504 [AA] | 5323148-5324662 | GOQ09_24880 | tripartite tricarboxylate transporter permease |
| 5077 | CP046622.1 | QGW85144.1 JB | 1569 [NA] | 522 [AA] | 5347580-5349148 | GOQ09_25005 | prolyl oligopeptidase family serine peptidase |
| 5078 | CP046622.1 | QGW85145.1 JB | 1299 [NA] | 432 [AA] | 5353329-5354627 | GOQ09_25035 | type II toxin-antitoxin system HipA family toxin |
| 5079 | CP046622.1 | QGW85146.1 JB | 270 [NA] | 89 [AA] | 5359790-5360059 | GOQ09_25070 | hypothetical protein |
| 5080 | CP046622.1 | QGW85147.1 JB | 816 [NA] | 271 [AA] | 5392758-5393573 | GOQ09_25220 | ABC transporter permease subunit |
| 5081 | CP046622.1 | QGW85148.1 JB | 654 [NA] | 217 [AA] | 5397974-5398627 | GOQ09_25245 | TetR family transcriptional regulator |
| 5082 | CP046622.1 | QGW85149.1 JB | 1752 [NA] | 583 [AA] | 5418299-5420050 | GOQ09_25305 | ShlB/FhaC/HecB family hemolysin secretion/activation protein |
| 5083 | CP046622.1 | QGW85150.1 JB | 612 [NA] | 203 [AA] | 5443615-5444226 | GOQ09_25390 | glutathione peroxidase |
| 5084 | CP046622.1 | QGW85151.1 JB | 3705 [NA] | 1234 [AA] | 5458187-5461891 | GOQ09_25465 | fimbrial assembly protein |
| 5085 | CP046622.1 | QGW85152.1 JB | 864 [NA] | 287 [AA] | 5463751-5464614 | GOQ09_25485 | prepilin-type N-terminal cleavage/methylation domain-containing protein |
| 5086 | CP046622.1 | QGW85153.1 JB | 807 [NA] | 268 [AA] | 5470926-5471732 | GOQ09_25520 | Stp1/IreP family PP2C-type Ser/Thr phosphatase |
| 5087 | CP046622.1 | QGW85154.1 JB | 267 [NA] | 88 [AA] | 5491715-5491981 | GOQ09_25625 | hypothetical protein |
| 5088 | CP046622.1 | QGW85155.1 JB | 612 [NA] | 203 [AA] | 5522429-5523040 | GOQ09_25790 | hypothetical protein |
| 5089 | CP046622.1 | QGW85156.1 JB | 426 [NA] | 141 [AA] | 5543455-5543880 | GOQ09_25890 | barnase inhibitor |