HOMD Pangenome Selection
| Available Pangenomes (Link opens pangenome in Anvio`) | Size (MB) | Description | Download Files v7 | Download Files v8 |
|---|---|---|---|---|
| Gemella (2022-07-05) | 200 | Pangenome of the genus Gemella containing all 30 available genomes from GenBank with a RefSeq equivalent by 03/02/2021. | ||
| Mitis Group | 586 | All 134 Genomes from HMT-677 (Stroptococcus Mitis) | ||
| Prochlorococcus (31) | 139 | 31 Prochlorococcus genome dataset from Meren's site (Non-HOMD): https://merenlab.org/2016/11/08/pangenomics-v2 |
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| Veillonella atypica | 442 | This pangenome was build using Anvi’o v7 with Python v3.7.9 and consists of 18 Veillonella atypica (HMT-524) refseq assemblies and associated V. sp. refseq assemblies downloaded from NCBI on 12/15/2022. Genomes are annotated with the Pfams data base (https://www.ebi.ac.uk/interpro/). | ||
| Veillonella denticariosi | 428 | This pangenome was build using Anvi’o v7 with Python v3.7.9 and consists of 2 Veillonella denticariosi (HMT-887) refseq assemblies and associated V. sp. refseq assemblies downloaded from NCBI on 12/15/2022. Genomes are annotated with the Pfams data base (https://www.ebi.ac.uk/interpro/). | ||
| Veillonella dispar | 444 | This pangenome was build using Anvi’o v7 with Python v3.7.9 and consists of 18 Veillonella dispar *(HMT-160) refseq assemblies and associated V. sp. refseq assemblies downloaded from NCBI on 12/15/2022. Genomes are annotated with the Pfams data base (https://www.ebi.ac.uk/interpro/). | ||
| Veillonella (HMT-780) | 327 | 6 genomes for Veillonella sp. HMT-780 and associated V. sp. refseq assemblies | ||
| Veillonella infantium | 428 | This pangenome was build using Anvi’o v7 with Python v3.7.9 and consists of 2 Veillonella infantium refseq assemblies and associated V. sp. refseq assemblies downloaded from NCBI on 12/15/2022. Genomes are annotated with the Pfams data base (https://www.ebi.ac.uk/interpro/). | ||
| Veillonella parvula | 454 | This pangenome was build using Anvi’o v7 with Python v3.7.9 and consists of 29 Veillonella atypica (HMT-161) refseq assemblies and associated V. sp. refseq assemblies downloaded from NCBI on 12/15/2022. Genomes are annotated with the Pfams data base (https://www.ebi.ac.uk/interpro/). | ||
| Veillonella rogosae | 429 | This pangenome was build using Anvi’o v7 with Python v3.7.9 and consists of 3 Veillonella rogosae (HMT-158) refseq assemblies and associated V. sp. refseq assemblies downloaded from NCBI on 12/15/2022. Genomes are annotated with the Pfams data base (https://www.ebi.ac.uk/interpro/). | ||
| Veillonella tobetsuensis | 430 | This pangenome was build using Anvi’o v7 with Python v3.7.9 and consists of 4 Veillonella tobetsuensis refseq assemblies downloaded from NCBI on 12/15/2022. Genomes are annotated with the Pfams data base (https://www.ebi.ac.uk/interpro/). | ||
| Veillonella (genus) | 719 | This pangenome was build using Anvi’o v7 with Python v3.7.9 and consists of 101 Veillonella refseq assemblies downloaded from NCBI on 12/15/2022. Genomes are annotated with the Pfams data base (https://www.ebi.ac.uk/interpro/). |