HOMD :: Ecology

Ecology (Abundance) Pages

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Most abundant taxa for each oral sub-habitat.

The following abundance pages show available data with bar charts for the ranks in each taxon name (from domain to species) in the HOMD database. Listed on this page are taxonomic names from domain through genus for the taxa in HOMD. Each name in the table below is a link to a page showing abundance data from the three sources:
Eren (2014) , Segata (2012), and Dewhirst (not published)

Domain	Phylum	Class	Order	Family	Genus
Archaea	Euryarchaeota	Methanobacteria	Methanobacteriales	Methanobacteriaceae	Methanobrevibacter
Bacteria	Absconditabacteria_(SR1) Actinobacteria Bacteroidetes Chlamydiae Chlorobi Chloroflexi Cyanobacteria Firmicutes Fusobacteria Gracilibacteria_(GN02) Ignavibacteriae Lentisphaerae Proteobacteria Saccharibacteria_(TM7) Spirochaetes Synergistetes Tenericutes WPS-2	Absconditabacteria_(SR1)_[C-1] Actinomycetia Alphaproteobacteria Anaerolineae Bacilli Bacteroidetes_[C-1] Bacteroidia Betaproteobacteria Caldilineae Chitinophagia Chlamydiia Chlorobia Clostridia Coriobacteriia Deltaproteobacteria Epsilonproteobacteria Erysipelotrichia Flavobacteriia Fusobacteriia Gammaproteobacteria Gracilibacteria_(GN02)_[C-1] Gracilibacteria_(GN02)_[C-2] Ignavibacteria Lentisphaeria Mollicutes Negativicutes Oscillatoriophycideae Saccharibacteria_(TM7)_[C-1] Sphingobacteriia Spirochaetia Synergistia Tissierellia WPS-2_[C-1]	Absconditabacteria_(SR1)_[O-1] Actinomycetales Alphaproteobacteria_[O-1] Anaerolineales Bacillales Bacteroidales Bacteroidetes_[O-1] Bdellovibrionales Bifidobacteriales Burkholderiales Caldilineales Campylobacterales Cardiobacteriales Caulobacterales Chitinophagales Chlamydiales Chlorobiales Coriobacteriales Corynebacteriales Desulfobacterales Desulfovibrionales Eggerthellales Enterobacterales Erysipelotrichales Eubacteriales Flavobacteriales Fusobacteriales Gracilibacteria_(GN02)_[O-1] Gracilibacteria_(GN02)_[O-2] Hyphomicrobiales Ignavibacteriales Lactobacillales Micrococcales Mollicutes_[O-1] Mollicutes_[O-2] Mycoplasmatales Neisseriales Oscillatoriales Pasteurellales Propionibacteriales Pseudomonadales Rhodobacterales Rhodocyclales Rhodospirillales Saccharibacteria_(TM7)_[O-1] Selenomonadales Sphingobacteriales Sphingomonadales Spirochaetales Synergistales Tissierellales Veillonellales Victivallales WPS-2_[O-1] Xanthomonadales	Absconditabacteria_(SR1)_[F-1] Acetobacteraceae Actinomycetaceae Aerococcaceae Alcaligenaceae Alphaproteobacteria_[F-1] Anaerolineaceae Atopobiaceae Bacillaceae Bacteroidaceae Bacteroidales_[F-2] Bacteroidetes_[F-1] Bartonellaceae Bdellovibrionaceae Bifidobacteriaceae Boseaceae Bradyrhizobiaceae Brevibacteriaceae Brucellaceae Burkholderiaceae Caldilineaceae Campylobacteraceae Cardiobacteriaceae Carnobacteriaceae Caulobacteraceae Chitinophagaceae Chlamydiaceae Chlorobiaceae Clostridiales_[F-1] Clostridiales_[F-3] Comamonadaceae Coprobacillaceae Coriobacteriaceae Corynebacteriaceae Dermabacteraceae Desulfobulbaceae Desulfomicrobiaceae Desulfovibrionaceae Dietziaceae Eggerthellaceae Enterobacteriaceae Enterococcaceae Erysipelotrichaceae Erythrobacteraceae Eubacteriaceae Flavobacteriaceae Fusobacteriaceae Gemellaceae Gracilibacteria_(GN02)_[F-1] Gracilibacteria_(GN02)_[F-2] Helicobacteraceae Ignavibacteriaceae Intrasporangiaceae Kytococcaceae Lachnospiraceae Lactobacillaceae Lawsonellaceae Leptotrichiaceae Listeriaceae Melioribacteraceae Microbacteriaceae Micrococcaceae Microcoleaceae Mollicutes_[F-1] Mollicutes_[F-2] Moraxellaceae Morganellaceae Mycobacteriaceae Mycoplasmataceae Neisseriaceae Odoribacteraceae Oscillospiraceae Paenibacillaceae Pasteurellaceae Peptococcaceae Peptoniphilaceae Peptostreptococcaceae Phyllobacteriaceae Porphyromonadaceae Prevotellaceae Promicromonosporaceae Propionibacteriaceae Pseudomonadaceae Rhizobiaceae Rhodobacteraceae Rhodocyclaceae Rhodospirillales_[F-1] Ruminococcaceae Saccharibacteria_(TM7)_[F-1] Saccharibacteria_(TM7)_[F-2] Sanguibacteraceae Selenomonadaceae Sphingobacteriaceae Sphingomonadaceae Staphylococcaceae Streptococcaceae Synergistaceae Syntrophomonadaceae_[VIII] Tannerellaceae Treponemataceae Veillonellaceae Victivallaceae WPS-2_[F-1] Weeksellaceae Xanthomonadaceae Yersiniaceae	Abiotrophia Absconditabacteria_(SR1)_[G-1] Achromobacter Acidipropionibacterium Acidovorax Acinetobacter Actinomyces Aeriscardovia Aerococcus Afipia Aggregatibacter Agrobacterium Alkalihalobacillus Alloiococcus Alloprevotella Alloscardovia Anaerococcus Anaeroglobus Anaerolinea Anaerolineae_[G-1] Anoxybacillus Aquamicrobium Arachnia Arcanobacterium Arsenicicoccus Arthrospira Atopobium Bacillus Bacteroidales_[G-2] Bacteroides Bacteroidetes_[G-3] Bacteroidetes_[G-4] Bacteroidetes_[G-5] Bacteroidetes_[G-7] Bartonella Bdellovibrio Bifidobacterium Bordetella Bosea Bradyrhizobium Brevibacterium Brevundimonas Brochothrix Brucella Bulleidia Burkholderia Butyrivibrio Caldilinea Campylobacter Candidatus_Saccharimonas Capnocytophaga Cardiobacterium Catonella Caulobacter Cellulosimicrobium Centipeda Chlamydia Chlorobium Chryseobacterium Cloacibacterium Clostridiales_[F-1][G-1] Clostridiales_[F-1][G-2] Clostridiales_[F-3][G-1] Colibacter Comamonas Corynebacterium Cronobacter Cryptobacterium Cupriavidus Cutibacterium Delftia Dermabacter Desulfobulbus Desulfomicrobium Desulfovibrio Dialister Dietzia Dolosigranulum Eggerthella Eggerthia Eikenella Enhydrobacter Enterobacter Enterococcus Erysipelothrix Erysipelotrichaceae_[G-1] Erythrobacter Escherichia Eubacterium Fannyhessea Fastidiosipila Filifactor Finegoldia Flavitalea Fretibacterium Fusobacterium Gardnerella Gemella Gracilibacteria_(GN02)_[G-1] Gracilibacteria_(GN02)_[G-2] Gracilibacteria_(GN02)_[G-3] Gracilibacteria_(GN02)_[G-4] Granulicatella Haematobacter Haemophilus Helicobacter Ignavibacterium Janibacter Jeotgalicoccus Johnsonella Jonquetella Kingella Klebsiella Kluyvera Kocuria Kytococcus Lachnoanaerobaculum Lachnospiraceae_[G-10] Lachnospiraceae_[G-2] Lachnospiraceae_[G-3] Lachnospiraceae_[G-7] Lachnospiraceae_[G-8] Lachnospiraceae_[G-9] Lacticaseibacillus Lactiplantibacillus Lactobacillus Lactococcus Lancefieldella Lautropia Lawsonella Lentilactobacillus Leptothrix Leptotrichia Levilactobacillus Ligilactobacillus Limosilactobacillus Listeria Lysinibacillus Megasphaera Melioribacter Mesorhizobium Micavibrio Microbacterium Micrococcus Mitsuokella Mobiluncus Mogibacterium Mollicutes_[G-1] Mollicutes_[G-2] Moraxella Mycobacterium Mycolicibacterium Mycoplasma Mycoplasmopsis Neisseria Neisseriaceae_[G-1] Novosphingobium Odoribacter Olegusella Olsenella Oribacterium Oryzomicrobium Ottowia Paenibacillus Paracoccus Parascardovia Parvimonas Pedobacter Peptidiphaga Peptococcus Peptoniphilaceae_[G-1] Peptoniphilaceae_[G-2] Peptoniphilaceae_[G-3] Peptoniphilus Peptostreptococcaceae_[G-1] Peptostreptococcaceae_[G-2] Peptostreptococcaceae_[G-3] Peptostreptococcaceae_[G-4] Peptostreptococcaceae_[G-5] Peptostreptococcaceae_[G-6] Peptostreptococcaceae_[G-7] Peptostreptococcaceae_[G-8] Peptostreptococcaceae_[G-9] Peptostreptococcus Phocaeicola Porphyromonas Prevotella Propionibacteriaceae_[G-1] Propionibacteriaceae_[G-2] Proteus Pseudoleptotrichia Pseudomonas Pseudoramibacter Pyramidobacter Ralstonia Rhodobacter Rhodopseudomonas Riemerella Roseomonas Rothia Ruminococcaceae_[G-1] Ruminococcaceae_[G-2] Ruminococcaceae_[G-3] Saccharibacteria_(TM7)_[G-1] Saccharibacteria_(TM7)_[G-2] Saccharibacteria_(TM7)_[G-3] Saccharibacteria_(TM7)_[G-4] Saccharibacteria_(TM7)_[G-5] Saccharibacteria_(TM7)_[G-6] Saccharibacteria_(TM7)_[G-7] Saccharibacteria_(TM7)_[G-8] Sanguibacter Scardovia Schaalia Schlegelella Segetibacter Selenomonas Serratia Shuttleworthia Simonsiella Slackia Sneathia Solobacterium Sphingomonas Staphylococcus Stenotrophomonas Stomatobaculum Streptococcus Syntrophomonadaceae_[VIII][G-1] Tannerella Treponema Variovorax Veillonella Veillonellaceae_[G-1] Victivallales_[G-1] WPS-2_[G-1] Weeksellaceae_[G-1] Yersinia

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