HOME
Taxonomy
Taxon Table
Life Pages
Ecology / Abundance
Dynamic Tree
Rank Level and Counts
Preferred Body Sites
Download Taxonomy Data
Dropped Taxa
Taxonomy Version History
Genomes
Genome Table
CRISPR-Cas (V3.1 data)
JBrowse Genome Viewer Tool
Genomic Trees
»
Conserved Protein Tree
Ribosomal Protein Tree
16S rRNA Gene Tree
Genome Explorer and Annotations
BLAST Against All Genomes
BLAST Against A Single Genome
Pangenomes
(
Beta
)
Download Genomic Data
HOMD Reference Genome Version History
Proteomes
View Genomic Tree based on Conserved Proteins
All Protein Sequences Annotated from Genomes
Proteins Detected in Human Saliva
Genomes with Proteins Detected in Human Saliva
16S rRNA Microbiome
RefSeq BLAST Server
View 16S rRNA RefSeq Phylogenetic Tree
Download RefSeq Data
Version History
Animal Microbiomes
Mouse (MOMD)
Downloads
Download Batch HOMD Data
HOMD FTP Site
Resources/Tools
HOMD Site (V3.1)
Posters
Publications
Oralgen
»
Oralgen Genome Info
Site Search
About Us
HOMD Help Content
How to Cite HOMD
Project Description
Strains and DNA Availability
People
Publications
Contact Us
Announcements
Site Search
Taxonomy:
V4.0
| 16S rRNA RefSeq:
V16.02
| Genomic RefSeq:
V11.01
Genome Table
There are 8488 genomes representing 630 taxa (Including 'Reference' and 'Dropped' Taxa).
Download this Genome Data
:
[Browser]
[Text]
[Excel]
OR
Batch Genomic Data
Genus by Alphabet:
[
All
]
A
|
B
|
C
|
D
|
E
|
F
|
G
|
H
|
I
|
J
|
K
|
L
|
M
N
|
O
|
P
|
Q
|
R
|
S
|
T
|
U
|
V
|
W
|
X
|
Y
|
Z
Genomes by Phylum:
Select a Phylum
Actinomycetota
Bacillota
Bacteroidota
Chlamydiota
Chlorobiota
Chloroflexota
Cyanobacteriota
Eremiobacterota
Fusobacteriota
Methanobacteriota
Mycoplasmatota
Patescibacteria
Pseudomonadota
Spirochaetota
Synergistota
Verrucomicrobiota
Reset Filters
Open Advanced Filter
Text Search:
Paging:
On
(500 rows / page)
Off (show all 24 rows)
Assembly Level:
Complete Genome
Scaffold
Contig
Chromosome
Toggle CheckBoxes On/Off
Sort Column
:
Genome-ID
Taxon-ID
Species
Strain
MAG
Level
Contigs
Length
GC
Reverse
Submit
Number of Records Found: 24 | Showing: 24 rows
row #
Genome-ID
Taxon-ID
Species Name
Strain
MAG
Assembly Level
Contigs
Combined
Length
GC(%)
More Information and Tools
Annotations
1
GCA_900407385.1
HMT-535
Haemophilus aegyptius
PTHi-10983
Contig
44
1,826,166
37.94
Taxon Info
Description
Viewer
BLAST
PROKKA
NCBI
2
GCA_900450755.1
HMT-535
Haemophilus aegyptius
NCTC8135
Contig
3
1,922,958
38.1
Taxon Info
Description
Viewer
BLAST
PROKKA
NCBI
3
GCA_900475885.1
HMT-535
Haemophilus aegyptius
NCTC8502
Complete Genome
1
1,993,258
38.28
Taxon Info
Description
Viewer
BLAST
PROKKA
NCBI
4
GCA_900637765.1
HMT-535
Haemophilus aegyptius
NCTC8134
Complete Genome
1
1,993,241
38.28
Taxon Info
Description
Viewer
BLAST
PROKKA
NCBI
5
GCA_000195005.1
HMT-535
Haemophilus aegyptius
ATCC 11116
Scaffold
65
1,963,583
39.61
Taxon Info
Description
Viewer
BLAST
PROKKA
NCBI
6
GCA_000197875.1
HMT-535
Haemophilus aegyptius
F3031
Complete Genome
1
1,985,832
38.22
Taxon Info
Description
Viewer
BLAST
PROKKA
NCBI
7
GCA_000200475.1
HMT-535
Haemophilus aegyptius
F3047
Complete Genome
1
2,007,018
38.22
Taxon Info
Description
Viewer
BLAST
PROKKA
NCBI
8
GCA_001679305.1
HMT-535
Haemophilus aegyptius
CCUG 628
Scaffold
27
1,856,412
37.92
Taxon Info
Description
Viewer
BLAST
PROKKA
NCBI
9
GCA_001679335.1
HMT-535
Haemophilus aegyptius
CCUG 26840
Scaffold
37
1,926,181
38.1
Taxon Info
Description
Viewer
BLAST
PROKKA
NCBI
10
GCA_003351505.1
HMT-535
Haemophilus aegyptius
M14951
Chromosome
1
2,008,126
38.23
Taxon Info
Description
Viewer
BLAST
PROKKA
NCBI
11
GCA_003490865.1
HMT-535
Haemophilus aegyptius
M22154
Contig
32
1,810,476
37.88
Taxon Info
Description
Viewer
BLAST
PROKKA
NCBI
12
GCA_003493485.1
HMT-535
Haemophilus aegyptius
M23174
Contig
14
1,876,170
37.92
Taxon Info
Description
Viewer
BLAST
PROKKA
NCBI
13
GCA_005888175.1
HMT-535
Haemophilus aegyptius
F3030
Contig
67
1,962,639
38.02
Taxon Info
Description
Viewer
BLAST
PROKKA
NCBI
14
GCA_005888185.1
HMT-535
Haemophilus aegyptius
F3283
Contig
130
1,962,133
38.03
Taxon Info
Description
Viewer
BLAST
PROKKA
NCBI
15
GCA_005888195.1
HMT-535
Haemophilus aegyptius
KC1018
Contig
96
1,909,282
38.07
Taxon Info
Description
Viewer
BLAST
PROKKA
NCBI
16
GCA_005888205.1
HMT-535
Haemophilus aegyptius
F3039
Contig
138
1,961,979
38.03
Taxon Info
Description
Viewer
BLAST
PROKKA
NCBI
17
GCA_005888215.1
HMT-535
Haemophilus aegyptius
F3042
Contig
137
1,969,657
38.04
Taxon Info
Description
Viewer
BLAST
PROKKA
NCBI
18
GCA_005888265.1
HMT-535
Haemophilus aegyptius
F1946
Contig
74
1,957,726
38.04
Taxon Info
Description
Viewer
BLAST
PROKKA
NCBI
19
GCA_008586745.1
HMT-535
Haemophilus aegyptius
HE7/F1946
Complete Genome
1
1,985,844
38.22
Taxon Info
Description
Viewer
BLAST
PROKKA
NCBI
20
GCA_008586765.1
HMT-535
Haemophilus aegyptius
HE40/F3043
Complete Genome
1
2,000,194
38.23
Taxon Info
Description
Viewer
BLAST
PROKKA
NCBI
21
GCA_008586785.1
HMT-535
Haemophilus aegyptius
HE37/F3052
Complete Genome
1
1,877,864
38.12
Taxon Info
Description
Viewer
BLAST
PROKKA
NCBI
22
GCA_008586805.1
HMT-535
Haemophilus aegyptius
HE24/F3037
Complete Genome
1
1,987,687
38.22
Taxon Info
Description
Viewer
BLAST
PROKKA
NCBI
23
GCA_008586825.1
HMT-535
Haemophilus aegyptius
HE15/F3028
Complete Genome
1
1,984,979
38.22
Taxon Info
Description
Viewer
BLAST
PROKKA
NCBI
24
GCA_019930905.1
HMT-535
Haemophilus aegyptius
FDAARGOS_1478
Complete Genome
1
1,993,271
38.28
Taxon Info
Description
Viewer
BLAST
PROKKA
NCBI
Advanced Genome Table Filter
×
Genomes by Phylum:
Select a Phylum
Actinomycetota
Bacillota
Bacteroidota
Chlamydiota
Chlorobiota
Chloroflexota
Cyanobacteriota
Eremiobacterota
Fusobacteriota
Methanobacteriota
Mycoplasmatota
Patescibacteria
Pseudomonadota
Spirochaetota
Synergistota
Verrucomicrobiota
Clear
Assembly Level:
Complete Genome
Scaffold
Contig
Chromosome
Toggle CheckBoxes On/Off
Search This Table:
All Fields
Genome-ID
Taxon-ID
Organism
Strain
Clear
Genomes from Taxa of Primary Body Sites:
(See
Preferred Body Sites
Page)
Oral
Nasal
Skin
Gut
Vaginal
Pathogen
Environmental
Reference
Unassigned
Toggle CheckBoxes On/Off
Genomes from Taxa Abundance:
High
Medium
Low
Scarce
Toggle CheckBoxes On/Off
Genomes from Taxa Status:
Named / Cultivated
Named / Uncultivated
Unnamed / Cultivated
Unnamed / Uncultivated
Dropped
Toggle CheckBoxes On/Off
Sort Column:
Genome-ID
Taxon-ID
Species
Strain
Level
Contigs
Length
GC
Reverse
Table Paging:
On
(500 rows / page)
Off
(show all filtered rows in one table)
MAGs:
Show Only MAGs
No MAGs
Default
Apply
Close