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16S rRNA RefSeq: V15.22    Genomic RefSeq: V9.15
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Available HOMD Databases

For RefSeq Blast:

eHOMD 16s rRNA RefSeq Version 15.22 (starts at pos 9)
  1. 1. eHOMD 16s rRNA RefSeq Version 15.22 (starts at pos 28)
  2. 2. eHOMD 16s rRNA RefSeq Version 14.51 (starts at pos 9)
  3. 3. eHOMD 16s rRNA RefSeq Version 14.51 (starts at pos 28)
  4. 4. eHOMD 16s rRNA RefSeq Version 14.51 (starts at 28 trimmed at 1407 of aligned seq)
  5. 5. eHOMD 16s rRNA RefSeq Version 13.2 (starts at pos 9)
  6. 6. eHOMD 16s rRNA RefSeq Version 13.2 (starts at pos 28)
  7. 7. Greengenes 16S rRNA Sequences (gg16S_unaligned)
  8. 8. NCBI Reference RNA Sequences (refseq_rna, 1969-12-31)
  9. 9. RDP 16S rRNA Sequences
  10. 10. eHOMD 16s rRNA RefSeq Extended V1.1


For Genomes Blast:

1. Genomic DNA from all HOMD Genomes
    => Blast against the whole sequences of genomes annotated automatically by HOMD

2. DNA Sequences of Proteins from all HOMD Genomes
    => Blast against the orfs amino acids of genomes annotated automatically by HOMD

3. "organism": Genomic DNA
    => Blast against the whole sequence of "organism"

4. "organism": DNA of Annotated Proteins
    => Blast against only orfs amino acids of "organism"