Page Help::Taxon Description
The Taxon Description page lists a general Description, Disease Associations and Prevalence
in the top of the page.
The remainder of the page is a table that lists standard information about the taxon:
The remainder of the page is a table that lists standard information about the taxon:
- Classification:
The taxonomic names (lineage) of the HMT (human microbial taxon) ranked Domain through Species (or Subspecies). Each of these names link to the 'Life' Page for that name and rank.
- Status:
One of Named, Unnamed, Phylotype, Lost, Dropped (no TaxDescription page) or NonOralRef (NonOral Reference Taxon)
- Type/Reference Strain:
- Former Names or Synonyms
- Genotypic Description:
- Phenotypic Characteristics:
A brief description
- Cultivability:
Description of its ability to be cultivated
- Pangenome:
(not implemented yet)- Will link to HOMD version of https://anvi-server.org/ Allowing exploration of selected pangenomes from HOMD genomes.
- Microbial Ecology:
- Proteomics:
- Tools:
A list of tools (with links) available for this taxon.
- NCBI Taxonomy ID:
- PubMed Searches:
Direct links to the NCBI Data of this pages taxon
- Number of Genome Sequences:
The number of genomes in HOMD that contain this taxon. Also a link to the genome table showing this genomes.
- Phylogenetic Trees:
Links to three trees (with this taxon highlighted): The Genome Tree, Ribosomal Protein Tree and the 16S rRNA Gene Tree