HOMD ::species::Capnocytophaga gingivalis

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16S rRNA RefSeq: V15.23 Genomic RefSeq: V10.1

Species: Capnocytophaga gingivalis

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Full Lineage: Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Capnocytophaga; Capnocytophaga gingivalis

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From: Segata et al.(2012)	No Notes

From: Eren et al.(2014) (V1-V3)

Notes:

reads equally close to C. gingivalis and C. granulosa were assigned half to each taxon

percent abundance

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	STO
Avg	1.431	1.521	0.053	0.220	0.043	0.199	0.193	0.291	0.127	0.001
10^thp	0.042	0.186	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	3.466	3.192	0.053	0.378	0.114	0.383	0.511	1.038	0.351	0.000
Stdev	1.532	1.681	0.324	0.556	0.096	0.353	0.434	0.547	0.290	0.005
Prev	94.805	96.104	32.468	80.519	59.740	81.818	63.636	71.429	61.039	2.597

From: Eren et al.(2014) (V3-V5)

No Notes

percent abundance

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	STO
Avg	1.565	1.975	0.034	0.135	0.067	0.236	0.192	0.323	0.142	0.000
10^thp	0.102	0.244	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	3.464	4.106	0.069	0.336	0.168	0.586	0.522	0.988	0.383	0.000
Stdev	2.045	1.980	0.183	0.309	0.108	0.266	0.450	0.561	0.311	0.001
Prev	96.622	96.622	22.297	66.892	60.135	85.811	62.162	72.297	58.108	0.699

From: Dewhirst 35x9 data (not published yet)

Notes:

Reads equally close to HMT 325 and 337 were assigned half to each taxon.

percent abundance

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	ANA
Avg	0.973	1.354	0.082	0.062	0.125	0.097	0.075	0.044	0.099	0.000
10^thp	0.003	0.077	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	2.566	4.263	0.368	0.224	0.331	0.259	0.264	0.152	0.500	0.000
Stdev	2.636	1.880	0.134	0.091	0.290	0.167	0.131	0.077	0.191	0.000
Prev	95.946	100.000	79.070	80.000	78.571	82.000	75.758	58.065	65.000	0.000