HOMD ::species::Porphyromonas pasteri

HOME
Taxonomy
Genomes
Proteomes
- View Genomic Tree based on Conserved Proteins
- All Protein Sequences Annotated from Genomes
16S rRNA Microbiome
Animal Microbiomes
- Mouse (MOMD)
Downloads
- Download Batch HOMD Data
- HOMD FTP Site
Resources
HOMD-v2
[Page-Help]

16S rRNA RefSeq: V15.23 Genomic RefSeq: V10.1

Species: Porphyromonas pasteri

Download Options

Full Lineage: Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas; Porphyromonas pasteri

^th

^th

^th

^th

From: Segata et al.(2012)	No Notes

From: Eren et al.(2014) (V1-V3)

No Notes

percent abundance

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	STO
Avg	1.281	1.196	1.312	2.247	3.016	4.207	2.480	3.047	3.913	0.003
10^thp	0.000	0.000	0.000	0.071	0.091	0.047	0.014	0.034	0.008	0.000
90^thp	3.457	3.818	3.548	5.821	7.597	9.882	6.845	7.260	11.631	0.001
Stdev	2.769	2.211	2.309	2.910	3.256	4.540	3.108	3.412	5.960	0.012
Prev	76.623	74.026	81.818	97.403	93.506	90.909	89.610	89.610	89.610	10.390

From: Eren et al.(2014) (V3-V5)

Notes:

Reads equally close to P. pasteri and P. sp. HMT 278 were assigned half to each taxon.

percent abundance

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	STO
Avg	0.870	1.026	0.286	1.408	1.773	2.400	1.771	1.781	2.163	0.000
10^thp	0.000	0.000	0.000	0.069	0.063	0.168	0.013	0.025	0.011	0.000
90^thp	2.843	3.257	0.556	3.193	4.060	5.590	4.801	4.513	6.007	0.000
Stdev	1.341	1.344	0.764	1.825	1.757	2.261	2.174	2.061	2.775	0.002
Prev	84.459	82.432	71.622	95.270	94.595	97.297	90.541	92.568	93.919	3.497

From: Dewhirst 35x9 data (not published yet)

No Notes

percent abundance

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	ANA
Avg	0.845	1.211	1.137	1.243	2.969	5.952	1.597	1.917	1.898	0.010
10^thp	0.000	0.007	0.003	0.003	0.026	0.022	0.018	0.035	0.015	0.000
90^thp	1.681	4.088	3.392	3.014	7.352	18.388	4.287	5.084	6.110	0.021
Stdev	2.577	2.225	2.074	1.969	6.605	7.991	2.737	3.876	2.750	0.027
Prev	87.838	97.059	97.674	94.286	96.429	92.000	100.000	96.774	100.000	25.000