HOMD ::phylum::Spirochaetes

HOME
Taxonomy
Genomes
Proteomes
- View Genomic Tree based on Conserved Proteins
- All Protein Sequences Annotated from Genomes
16S rRNA Microbiome
Animal Microbiomes
- Mouse (MOMD)
Downloads
- Download Batch HOMD Data
- HOMD FTP Site
Resources
HOMD-v2
[Page-Help]

16S rRNA RefSeq: V15.23 Genomic RefSeq: V10.1

Phylum: Spirochaetes

Download Options

Full Lineage: Bacteria; Spirochaetes
Lower rank member(s): [Class:Spirochaetia]
Genera:

^th

^th

^th

^th

From: Segata et al.(2012)	No Notes

From: Eren et al.(2014) (V1-V3)

No Notes

percent abundance

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	STO
Avg	1.906	0.557	0.001	0.055	0.039	0.243	0.181	0.708	0.051	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	6.051	1.797	0.000	0.127	0.130	0.443	0.409	1.196	0.170	0.000
Stdev	3.639	1.415	0.005	0.142	0.080	0.754	0.504	2.095	0.108	0.003
Prev	72.727	49.351	6.494	37.662	38.961	64.935	50.649	80.519	40.260	2.597

From: Eren et al.(2014) (V3-V5)

No Notes

percent abundance

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	STO
Avg	3.632	1.061	0.016	0.145	0.057	0.497	0.230	0.689	0.050	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	10.365	2.388	0.016	0.431	0.141	1.181	0.450	1.766	0.183	0.000
Stdev	6.341	2.611	0.104	0.456	0.143	1.019	0.804	1.867	0.125	0.000
Prev	85.135	72.973	12.162	55.405	41.892	79.730	64.189	72.297	40.541	0.000

From: Dewhirst 35x9 data (not published yet)

No Notes

percent abundance

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	ANA
Avg	1.366	0.235	0.026	0.097	0.028	0.018	0.057	0.328	0.010	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	3.992	0.488	0.065	0.275	0.075	0.051	0.095	0.425	0.021	0.000
Stdev	3.435	0.499	0.053	0.269	0.070	0.021	0.126	0.874	0.025	0.000
Prev	79.730	76.471	55.814	62.857	60.714	70.000	87.879	77.419	47.500	0.000