HOMD ::species::Treponema socranskii

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16S rRNA RefSeq: V15.23 Genomic RefSeq: V10.1

Species: Treponema socranskii

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Full Lineage: Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Treponemataceae; Treponema; Treponema socranskii

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From: Segata et al.(2012)	No Notes

From: Eren et al.(2014) (V1-V3)

No Notes

percent abundance

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	STO
Avg	0.409	0.168	0.000	0.011	0.006	0.025	0.037	0.071	0.003	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	1.413	0.403	0.000	0.020	0.000	0.071	0.065	0.243	0.010	0.000
Stdev	0.708	0.471	0.000	0.038	0.025	0.053	0.123	0.163	0.010	0.003
Prev	57.143	44.156	0.000	12.987	9.091	35.065	25.974	42.857	11.688	1.299

From: Eren et al.(2014) (V3-V5)

Notes:

Reads equally close to T. socranskii, T. sp. HMT 268, and T. sp. HMT 269 were assigned one-third to each taxon.

percent abundance

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	STO
Avg	0.297	0.129	0.000	0.009	0.003	0.027	0.010	0.027	0.003	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.848	0.392	0.000	0.016	0.006	0.073	0.023	0.069	0.010	0.000
Stdev	0.401	0.293	0.002	0.056	0.016	0.044	0.033	0.065	0.010	0.000
Prev	73.649	62.838	3.378	25.676	10.811	56.081	30.405	45.946	18.919	0.000

From: Dewhirst 35x9 data (not published yet)

No Notes

percent abundance

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	ANA
Avg	0.300	0.161	0.006	0.016	0.004	0.004	0.006	0.026	0.001	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.888	0.385	0.012	0.021	0.008	0.010	0.016	0.082	0.004	0.000
Stdev	0.615	0.456	0.020	0.043	0.010	0.005	0.021	0.056	0.004	0.000
Prev	72.973	67.647	23.256	51.429	28.571	50.000	39.394	48.387	15.000	0.000